Query 043144
Match_columns 580
No_of_seqs 829 out of 3279
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 23:30:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043144.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043144hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 2.7E-42 9.4E-47 360.0 44.2 477 83-572 83-586 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.8E-39 6.3E-44 338.6 37.9 461 95-569 64-549 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1.1E-29 3.7E-34 249.7 47.0 122 91-214 6-129 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 1.7E-29 5.8E-34 248.3 47.1 382 125-516 5-388 (388)
5 4g26_A Pentatricopeptide repea 100.0 1.5E-28 5.2E-33 245.1 25.1 184 364-547 29-221 (501)
6 4g26_A Pentatricopeptide repea 100.0 2.5E-28 8.6E-33 243.6 25.1 185 329-513 29-222 (501)
7 2gw1_A Mitochondrial precursor 100.0 3.7E-26 1.3E-30 233.4 39.0 436 86-530 8-478 (514)
8 2gw1_A Mitochondrial precursor 100.0 2.9E-26 9.9E-31 234.2 37.6 444 119-571 6-484 (514)
9 3fp2_A TPR repeat-containing p 99.9 1.8E-24 6E-29 222.3 39.1 433 85-530 26-491 (537)
10 2y4t_A DNAJ homolog subfamily 99.9 2.9E-24 9.9E-29 215.5 39.5 386 137-556 10-445 (450)
11 3fp2_A TPR repeat-containing p 99.9 1.4E-24 4.7E-29 223.1 37.3 441 119-574 25-500 (537)
12 2y4t_A DNAJ homolog subfamily 99.9 4.6E-24 1.6E-28 214.0 38.8 388 100-520 8-444 (450)
13 3ieg_A DNAJ homolog subfamily 99.9 1.9E-20 6.6E-25 181.3 40.4 315 221-566 3-336 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 2.2E-20 7.4E-25 181.0 39.5 331 185-547 2-351 (359)
15 2xm6_A Protein corresponding t 99.9 3.2E-19 1.1E-23 180.4 48.8 364 103-496 26-433 (490)
16 2xm6_A Protein corresponding t 99.9 8.9E-19 3E-23 177.1 49.8 365 137-531 25-433 (490)
17 2ooe_A Cleavage stimulation fa 99.9 3E-19 1E-23 182.5 44.0 431 107-567 2-494 (530)
18 2ooe_A Cleavage stimulation fa 99.9 5.9E-19 2E-23 180.3 45.8 415 83-530 12-492 (530)
19 3hym_B Cell division cycle pro 99.9 4.6E-20 1.6E-24 176.5 31.8 292 255-553 21-322 (330)
20 3hym_B Cell division cycle pro 99.9 1.4E-19 4.7E-24 173.2 32.7 287 223-516 24-320 (330)
21 1xi4_A Clathrin heavy chain; a 99.9 4.5E-17 1.5E-21 172.1 46.2 417 87-560 988-1440(1630)
22 1fch_A Peroxisomal targeting s 99.9 2.1E-19 7.1E-24 174.9 26.1 264 294-563 67-357 (368)
23 4g1t_A Interferon-induced prot 99.9 3.1E-18 1.1E-22 172.6 35.7 392 152-576 49-470 (472)
24 1fch_A Peroxisomal targeting s 99.8 1.6E-19 5.4E-24 175.7 24.7 302 94-420 35-354 (368)
25 1xi4_A Clathrin heavy chain; a 99.8 4.1E-16 1.4E-20 164.9 48.4 380 121-557 987-1376(1630)
26 4eqf_A PEX5-related protein; a 99.8 2.4E-19 8.3E-24 174.2 21.6 266 290-561 64-352 (365)
27 4g1t_A Interferon-induced prot 99.8 6.3E-18 2.1E-22 170.4 32.0 382 117-531 49-460 (472)
28 4eqf_A PEX5-related protein; a 99.8 1.1E-18 3.7E-23 169.6 24.4 263 85-351 66-352 (365)
29 3cv0_A Peroxisome targeting si 99.8 4.5E-18 1.5E-22 162.4 27.6 263 85-352 22-312 (327)
30 1b89_A Protein (clathrin heavy 99.8 1.1E-18 3.8E-23 165.7 21.9 282 96-418 15-304 (449)
31 1b89_A Protein (clathrin heavy 99.8 3.1E-18 1.1E-22 162.7 23.0 266 83-383 31-304 (449)
32 3cv0_A Peroxisome targeting si 99.8 7.5E-18 2.5E-22 160.8 25.3 149 409-561 151-311 (327)
33 3mkr_A Coatomer subunit epsilo 99.8 7.8E-17 2.7E-21 150.1 27.4 273 264-557 7-286 (291)
34 3mkr_A Coatomer subunit epsilo 99.8 1.4E-16 4.8E-21 148.4 28.7 255 229-497 7-266 (291)
35 3e4b_A ALGK; tetratricopeptide 99.8 1E-16 3.5E-21 159.4 26.6 372 126-528 10-419 (452)
36 3e4b_A ALGK; tetratricopeptide 99.8 2E-16 6.8E-21 157.3 26.8 379 88-493 7-419 (452)
37 3uq3_A Heat shock protein STI1 99.7 1.3E-15 4.5E-20 139.6 24.6 225 328-566 7-237 (258)
38 3uq3_A Heat shock protein STI1 99.7 2.7E-15 9.1E-20 137.6 24.8 224 293-530 7-236 (258)
39 2pl2_A Hypothetical conserved 99.7 1.6E-15 5.6E-20 134.9 22.0 198 360-563 4-212 (217)
40 2pl2_A Hypothetical conserved 99.7 1E-15 3.5E-20 136.1 19.9 193 85-282 6-211 (217)
41 4e6h_A MRNA 3'-END-processing 99.7 6.3E-13 2.1E-17 136.5 41.1 427 99-530 47-570 (679)
42 4e6h_A MRNA 3'-END-processing 99.7 9.1E-13 3.1E-17 135.3 41.8 431 136-570 49-575 (679)
43 3u4t_A TPR repeat-containing p 99.7 1.3E-14 4.3E-19 134.4 25.7 247 293-544 5-263 (272)
44 3u4t_A TPR repeat-containing p 99.7 2E-14 6.7E-19 133.1 26.5 231 157-390 6-250 (272)
45 1ouv_A Conserved hypothetical 99.7 1.7E-13 5.8E-18 126.8 32.3 224 325-566 5-252 (273)
46 3spa_A Mtrpol, DNA-directed RN 99.7 2.2E-16 7.6E-21 161.9 12.9 117 221-337 127-247 (1134)
47 2h6f_A Protein farnesyltransfe 99.7 1.2E-14 4.1E-19 139.9 24.0 229 292-527 98-344 (382)
48 2h6f_A Protein farnesyltransfe 99.7 1.9E-14 6.6E-19 138.5 25.3 245 85-336 98-363 (382)
49 1xnf_A Lipoprotein NLPI; TPR, 99.7 2.6E-15 9.1E-20 139.2 18.6 246 95-349 16-269 (275)
50 2ho1_A Type 4 fimbrial biogene 99.7 4.9E-14 1.7E-18 128.8 26.7 203 362-568 38-241 (252)
51 1ouv_A Conserved hypothetical 99.7 3.9E-13 1.3E-17 124.3 32.5 223 291-531 6-252 (273)
52 2vq2_A PILW, putative fimbrial 99.7 1.2E-13 4.2E-18 123.5 27.3 204 360-567 7-213 (225)
53 2q7f_A YRRB protein; TPR, prot 99.6 2.2E-14 7.4E-19 130.2 22.1 199 364-567 26-224 (243)
54 3spa_A Mtrpol, DNA-directed RN 99.6 3.7E-16 1.3E-20 160.3 10.9 117 396-512 127-247 (1134)
55 2q7f_A YRRB protein; TPR, prot 99.6 2.7E-14 9.1E-19 129.6 21.0 214 326-545 23-236 (243)
56 2ho1_A Type 4 fimbrial biogene 99.6 2.7E-13 9.2E-18 123.8 27.4 200 327-530 38-238 (252)
57 1xnf_A Lipoprotein NLPI; TPR, 99.6 6E-15 2.1E-19 136.8 16.6 221 130-355 16-244 (275)
58 2vq2_A PILW, putative fimbrial 99.6 1.6E-13 5.5E-18 122.7 24.5 196 120-318 9-209 (225)
59 4a1s_A PINS, partner of inscut 99.6 3.4E-14 1.2E-18 140.1 18.5 273 86-390 50-372 (411)
60 3sf4_A G-protein-signaling mod 99.6 5.9E-14 2E-18 138.1 20.2 300 221-552 9-363 (406)
61 3sf4_A G-protein-signaling mod 99.6 5.7E-14 1.9E-18 138.2 19.5 131 258-388 189-334 (406)
62 4a1s_A PINS, partner of inscut 99.6 5.7E-14 2E-18 138.5 18.8 280 258-566 50-373 (411)
63 2ond_A Cleavage stimulation fa 99.6 3E-12 1E-16 120.6 28.6 185 378-567 81-272 (308)
64 2ond_A Cleavage stimulation fa 99.6 2.5E-12 8.7E-17 121.0 27.7 217 101-320 33-270 (308)
65 3ro2_A PINS homolog, G-protein 99.6 1.2E-13 4.1E-18 131.9 18.8 273 86-390 7-332 (338)
66 3vtx_A MAMA; tetratricopeptide 99.6 1.1E-12 3.9E-17 113.1 22.6 168 395-566 4-171 (184)
67 3ulq_A Response regulator aspa 99.6 5.3E-13 1.8E-17 130.2 22.8 232 332-565 109-368 (383)
68 3ro2_A PINS homolog, G-protein 99.5 1.8E-13 6.2E-18 130.6 18.4 274 121-426 7-333 (338)
69 3ulq_A Response regulator aspa 99.5 1E-12 3.5E-17 128.1 23.6 225 93-319 21-292 (383)
70 4abn_A Tetratricopeptide repea 99.5 3.9E-13 1.3E-17 134.5 20.9 213 342-560 84-316 (474)
71 4abn_A Tetratricopeptide repea 99.5 2.6E-13 8.8E-18 135.8 18.5 214 134-353 83-319 (474)
72 3vtx_A MAMA; tetratricopeptide 99.5 3.5E-12 1.2E-16 110.1 22.4 167 360-530 4-170 (184)
73 3nf1_A KLC 1, kinesin light ch 99.5 2.4E-13 8.1E-18 128.4 13.6 246 291-565 27-307 (311)
74 3nf1_A KLC 1, kinesin light ch 99.4 6.1E-13 2.1E-17 125.5 13.5 246 255-529 26-306 (311)
75 3q15_A PSP28, response regulat 99.4 2.3E-11 7.7E-16 118.3 24.6 230 332-564 107-364 (378)
76 1hz4_A MALT regulatory protein 99.4 8.2E-11 2.8E-15 114.2 27.6 267 88-354 18-321 (373)
77 1hz4_A MALT regulatory protein 99.4 8.8E-11 3E-15 113.9 27.3 302 259-568 17-352 (373)
78 3as5_A MAMA; tetratricopeptide 99.4 2.1E-11 7.2E-16 105.0 19.8 167 397-567 9-175 (186)
79 4gyw_A UDP-N-acetylglucosamine 99.4 1.4E-11 4.8E-16 128.1 21.4 163 398-564 11-173 (723)
80 3q15_A PSP28, response regulat 99.4 3.1E-11 1.1E-15 117.4 22.7 126 364-493 225-363 (378)
81 4i17_A Hypothetical protein; T 99.4 6.3E-11 2.2E-15 106.1 21.0 201 359-571 5-215 (228)
82 3as5_A MAMA; tetratricopeptide 99.4 3.5E-11 1.2E-15 103.6 17.6 161 86-249 10-172 (186)
83 4i17_A Hypothetical protein; T 99.3 2.1E-10 7.1E-15 102.7 22.5 209 324-545 5-223 (228)
84 4gyw_A UDP-N-acetylglucosamine 99.3 6E-11 2.1E-15 123.4 20.5 166 360-529 8-173 (723)
85 3edt_B KLC 2, kinesin light ch 99.3 3.5E-11 1.2E-15 111.5 14.8 228 337-565 12-281 (283)
86 2uy1_A Cleavage stimulation fa 99.3 1.3E-08 4.4E-13 101.6 32.4 388 96-564 6-412 (493)
87 3edt_B KLC 2, kinesin light ch 99.2 1.3E-10 4.3E-15 107.7 15.4 229 301-530 11-281 (283)
88 2uy1_A Cleavage stimulation fa 99.2 1.7E-08 5.9E-13 100.7 30.3 210 85-320 16-242 (493)
89 1qqe_A Vesicular transport pro 99.2 4.4E-10 1.5E-14 104.7 17.5 157 128-284 46-227 (292)
90 1qqe_A Vesicular transport pro 99.2 5.3E-10 1.8E-14 104.2 17.5 197 86-284 39-268 (292)
91 2fo7_A Synthetic consensus TPR 99.2 1.3E-09 4.4E-14 88.0 17.3 131 433-566 3-133 (136)
92 3mv2_B Coatomer subunit epsilo 99.2 5.8E-09 2E-13 95.0 23.1 243 264-530 21-282 (310)
93 3urz_A Uncharacterized protein 99.2 6E-10 2E-14 97.9 14.9 110 87-198 7-134 (208)
94 3qky_A Outer membrane assembly 99.2 9.6E-10 3.3E-14 100.6 16.7 95 85-180 16-123 (261)
95 3mv2_B Coatomer subunit epsilo 99.2 1E-08 3.5E-13 93.5 22.9 12 129-140 23-34 (310)
96 3qky_A Outer membrane assembly 99.1 1.5E-09 5E-14 99.4 17.5 185 116-320 12-224 (261)
97 3dra_A Protein farnesyltransfe 99.1 2.7E-08 9.2E-13 91.7 25.5 217 343-564 50-286 (306)
98 2pzi_A Probable serine/threoni 99.1 6.9E-10 2.3E-14 116.1 16.6 183 95-282 402-602 (681)
99 2fo7_A Synthetic consensus TPR 99.1 1.6E-09 5.6E-14 87.4 15.1 128 86-215 3-132 (136)
100 3urz_A Uncharacterized protein 99.1 2.4E-09 8.2E-14 94.0 16.9 182 361-567 4-188 (208)
101 3rjv_A Putative SEL1 repeat pr 99.1 2.9E-09 1E-13 93.7 17.5 176 102-286 4-198 (212)
102 3dra_A Protein farnesyltransfe 99.1 8.4E-08 2.9E-12 88.4 27.2 231 308-543 50-300 (306)
103 2pzi_A Probable serine/threoni 99.1 1.3E-09 4.5E-14 114.0 16.8 172 130-306 402-583 (681)
104 4ga2_A E3 SUMO-protein ligase 99.1 4.7E-10 1.6E-14 92.7 10.7 146 402-551 3-149 (150)
105 2yhc_A BAMD, UPF0169 lipoprote 99.1 1.4E-08 4.8E-13 90.4 21.0 189 360-569 3-217 (225)
106 2r5s_A Uncharacterized protein 99.1 1.1E-09 3.7E-14 93.4 12.9 159 87-248 9-171 (176)
107 2r5s_A Uncharacterized protein 99.1 1.5E-09 5.1E-14 92.5 13.6 160 121-282 8-170 (176)
108 3rjv_A Putative SEL1 repeat pr 99.1 6.6E-09 2.3E-13 91.5 17.3 176 137-321 4-198 (212)
109 4ga2_A E3 SUMO-protein ligase 99.1 4.2E-10 1.4E-14 93.0 8.9 120 94-215 7-129 (150)
110 2yhc_A BAMD, UPF0169 lipoprote 99.1 9.1E-09 3.1E-13 91.6 18.3 183 85-286 5-214 (225)
111 2vsy_A XCC0866; transferase, g 99.1 5.7E-09 2E-13 107.3 19.2 165 374-543 2-169 (568)
112 3qou_A Protein YBBN; thioredox 99.1 5E-09 1.7E-13 97.1 17.0 165 116-282 114-281 (287)
113 3qou_A Protein YBBN; thioredox 99.0 7.3E-09 2.5E-13 96.0 16.2 162 397-563 118-282 (287)
114 2vsy_A XCC0866; transferase, g 99.0 2.4E-08 8.1E-13 102.6 19.9 156 339-498 2-160 (568)
115 2ifu_A Gamma-SNAP; membrane fu 99.0 1.2E-08 4E-13 95.7 16.0 161 97-283 4-182 (307)
116 2ifu_A Gamma-SNAP; membrane fu 98.9 1.6E-08 5.4E-13 94.9 14.8 225 303-558 3-254 (307)
117 1hh8_A P67PHOX, NCF-2, neutrop 98.9 8.8E-08 3E-12 84.3 18.8 128 398-530 8-150 (213)
118 3q7a_A Farnesyltransferase alp 98.9 5.5E-07 1.9E-11 83.8 23.8 217 343-564 71-330 (349)
119 3u3w_A Transcriptional activat 98.9 6.2E-07 2.1E-11 83.3 24.4 164 401-564 80-265 (293)
120 1hh8_A P67PHOX, NCF-2, neutrop 98.9 7.3E-08 2.5E-12 84.8 17.0 126 86-216 8-151 (213)
121 4gco_A Protein STI-1; structur 98.9 8.1E-08 2.8E-12 76.3 14.9 98 468-567 15-112 (126)
122 3gyz_A Chaperone protein IPGC; 98.9 3E-08 1E-12 81.3 12.2 97 468-566 38-134 (151)
123 3q7a_A Farnesyltransferase alp 98.9 2E-06 6.9E-11 80.0 25.8 231 309-544 72-345 (349)
124 1a17_A Serine/threonine protei 98.8 1.6E-07 5.6E-12 78.7 16.9 129 432-563 14-144 (166)
125 4gco_A Protein STI-1; structur 98.8 1.4E-07 4.8E-12 74.9 15.1 110 432-544 14-123 (126)
126 2qfc_A PLCR protein; TPR, HTH, 98.8 1.2E-06 4.2E-11 81.3 23.1 166 398-563 77-264 (293)
127 2vgx_A Chaperone SYCD; alterna 98.8 3.2E-08 1.1E-12 81.3 10.7 95 433-529 23-117 (148)
128 4f3v_A ESX-1 secretion system 98.8 4.6E-08 1.6E-12 87.9 12.2 188 96-285 18-237 (282)
129 2c2l_A CHIP, carboxy terminus 98.8 3.8E-08 1.3E-12 90.8 11.8 192 118-319 3-198 (281)
130 4f3v_A ESX-1 secretion system 98.8 1.5E-07 5.2E-12 84.6 15.0 49 131-180 18-73 (282)
131 3u3w_A Transcriptional activat 98.8 1.4E-06 4.8E-11 80.9 22.2 163 367-529 81-265 (293)
132 1na0_A Designed protein CTPR3; 98.8 4.6E-07 1.6E-11 71.5 16.2 116 431-549 9-124 (125)
133 1a17_A Serine/threonine protei 98.8 1.3E-07 4.6E-12 79.2 13.7 125 86-212 15-143 (166)
134 2e2e_A Formate-dependent nitri 98.8 1.1E-07 3.8E-12 80.9 13.2 120 408-530 22-144 (177)
135 2vyi_A SGTA protein; chaperone 98.8 3.2E-07 1.1E-11 73.1 15.1 119 431-552 12-130 (131)
136 3gyz_A Chaperone protein IPGC; 98.7 9.5E-08 3.2E-12 78.3 11.9 98 118-216 35-134 (151)
137 2lni_A Stress-induced-phosphop 98.7 2.7E-07 9.3E-12 73.9 14.6 118 430-550 15-132 (133)
138 3gw4_A Uncharacterized protein 98.7 1.3E-07 4.4E-12 82.5 13.5 96 468-563 68-174 (203)
139 2c2l_A CHIP, carboxy terminus 98.7 5.1E-08 1.8E-12 89.9 11.0 190 85-284 5-198 (281)
140 2qfc_A PLCR protein; TPR, HTH, 98.7 5.5E-07 1.9E-11 83.7 18.1 164 120-283 76-264 (293)
141 3dss_A Geranylgeranyl transfer 98.7 9.4E-06 3.2E-10 75.2 25.8 187 377-568 90-307 (331)
142 2e2e_A Formate-dependent nitri 98.7 9.3E-08 3.2E-12 81.3 11.4 121 94-216 20-145 (177)
143 2vgx_A Chaperone SYCD; alterna 98.7 5.9E-08 2E-12 79.7 9.4 107 107-215 10-118 (148)
144 1p5q_A FKBP52, FK506-binding p 98.7 4.4E-07 1.5E-11 86.0 16.7 123 396-520 147-283 (336)
145 2lni_A Stress-induced-phosphop 98.7 3.1E-07 1.1E-11 73.6 13.4 114 85-200 17-132 (133)
146 1na0_A Designed protein CTPR3; 98.7 3E-07 1E-11 72.6 13.0 93 86-180 11-103 (125)
147 2vyi_A SGTA protein; chaperone 98.7 3.1E-07 1.1E-11 73.2 12.9 114 86-201 14-129 (131)
148 3gw4_A Uncharacterized protein 98.7 1.3E-07 4.5E-12 82.3 11.3 60 224-283 110-174 (203)
149 3upv_A Heat shock protein STI1 98.7 4E-07 1.4E-11 72.3 12.9 95 433-529 6-100 (126)
150 3dss_A Geranylgeranyl transfer 98.6 3.6E-05 1.2E-09 71.3 27.2 250 268-545 41-318 (331)
151 2xcb_A PCRH, regulatory protei 98.6 4.1E-07 1.4E-11 74.0 12.7 96 433-530 20-115 (142)
152 1elw_A TPR1-domain of HOP; HOP 98.6 1.2E-06 4.1E-11 68.2 14.9 98 468-567 6-103 (118)
153 3sz7_A HSC70 cochaperone (SGT) 98.6 6.1E-07 2.1E-11 75.1 13.5 100 429-530 9-108 (164)
154 2kck_A TPR repeat; tetratricop 98.6 4.2E-07 1.4E-11 70.2 11.5 102 466-569 6-110 (112)
155 3upv_A Heat shock protein STI1 98.6 1.3E-06 4.6E-11 69.2 14.0 99 466-566 4-102 (126)
156 1p5q_A FKBP52, FK506-binding p 98.6 1.1E-06 3.8E-11 83.2 15.6 131 360-492 146-291 (336)
157 1elw_A TPR1-domain of HOP; HOP 98.6 2.4E-06 8.4E-11 66.4 15.1 112 431-545 4-115 (118)
158 1hxi_A PEX5, peroxisome target 98.6 6.7E-07 2.3E-11 70.3 11.7 96 469-566 20-115 (121)
159 2fbn_A 70 kDa peptidylprolyl i 98.6 1.6E-06 5.5E-11 75.2 15.1 132 434-567 41-188 (198)
160 3q49_B STIP1 homology and U bo 98.6 2E-06 6.8E-11 69.3 14.6 100 429-530 7-106 (137)
161 2xcb_A PCRH, regulatory protei 98.5 2.9E-07 9.8E-12 75.0 9.3 95 120-215 19-115 (142)
162 4gcn_A Protein STI-1; structur 98.5 6.2E-07 2.1E-11 71.2 10.7 92 122-214 11-111 (127)
163 4gcn_A Protein STI-1; structur 98.5 2E-06 7E-11 68.2 13.5 93 436-529 13-111 (127)
164 2kck_A TPR repeat; tetratricop 98.5 9.8E-07 3.3E-11 68.0 11.1 93 121-214 8-105 (112)
165 1hxi_A PEX5, peroxisome target 98.5 7.4E-07 2.5E-11 70.1 10.3 93 86-180 19-111 (121)
166 3sz7_A HSC70 cochaperone (SGT) 98.5 1.6E-06 5.4E-11 72.5 12.7 94 85-180 12-105 (164)
167 2fbn_A 70 kDa peptidylprolyl i 98.5 1E-06 3.4E-11 76.4 11.8 119 86-206 40-176 (198)
168 2dba_A Smooth muscle cell asso 98.5 6.1E-06 2.1E-10 67.3 15.9 112 430-545 27-142 (148)
169 3q49_B STIP1 homology and U bo 98.5 2.6E-06 8.9E-11 68.6 13.2 99 465-565 8-106 (137)
170 2dba_A Smooth muscle cell asso 98.5 5.4E-06 1.9E-10 67.6 15.0 106 464-571 26-134 (148)
171 1elr_A TPR2A-domain of HOP; HO 98.4 7.4E-07 2.5E-11 71.0 8.8 93 86-180 6-105 (131)
172 1elr_A TPR2A-domain of HOP; HO 98.4 2.6E-06 8.7E-11 67.8 11.9 112 432-546 5-122 (131)
173 4b4t_Q 26S proteasome regulato 98.4 1E-05 3.5E-10 79.8 18.4 61 87-147 7-83 (434)
174 4b4t_Q 26S proteasome regulato 98.4 1.9E-05 6.5E-10 77.8 19.7 23 333-355 11-33 (434)
175 2xev_A YBGF; tetratricopeptide 98.4 8.8E-06 3E-10 64.6 13.4 93 436-530 7-105 (129)
176 3ro3_A PINS homolog, G-protein 98.3 2.8E-06 9.4E-11 70.5 10.6 133 433-565 11-158 (164)
177 1wao_1 Serine/threonine protei 98.3 2.8E-06 9.7E-11 84.5 12.1 119 90-210 12-134 (477)
178 2xev_A YBGF; tetratricopeptide 98.3 1E-05 3.5E-10 64.2 13.2 92 87-180 5-102 (129)
179 3k9i_A BH0479 protein; putativ 98.3 6.7E-07 2.3E-11 69.9 5.8 84 96-180 2-87 (117)
180 3rkv_A Putative peptidylprolyl 98.3 5.7E-06 2E-10 68.9 11.9 99 431-530 11-126 (162)
181 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 6.3E-06 2.2E-10 81.7 14.0 150 375-528 248-413 (457)
182 1ihg_A Cyclophilin 40; ppiase 98.3 1.1E-05 3.6E-10 77.4 14.3 140 396-557 223-362 (370)
183 1wao_1 Serine/threonine protei 98.3 2.7E-06 9.2E-11 84.7 10.4 119 439-560 14-134 (477)
184 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 6E-06 2.1E-10 81.8 12.8 119 86-206 270-405 (457)
185 2hr2_A Hypothetical protein; a 98.3 1.5E-05 5.1E-10 64.5 12.3 96 469-565 14-131 (159)
186 3k9i_A BH0479 protein; putativ 98.3 2.2E-06 7.5E-11 66.9 7.4 86 444-530 3-90 (117)
187 3ro3_A PINS homolog, G-protein 98.2 2.9E-06 9.9E-11 70.4 8.4 95 86-180 11-115 (164)
188 1dce_A Protein (RAB geranylger 98.2 5.1E-05 1.7E-09 76.9 18.9 173 377-554 45-244 (567)
189 2if4_A ATFKBP42; FKBP-like, al 98.2 3.4E-06 1.1E-10 79.9 9.3 154 396-570 179-333 (338)
190 1klx_A Cysteine rich protein B 98.2 5.8E-05 2E-09 60.6 14.9 112 445-567 9-128 (138)
191 3rkv_A Putative peptidylprolyl 98.2 1.3E-05 4.4E-10 66.7 11.2 100 396-496 11-127 (162)
192 1ihg_A Cyclophilin 40; ppiase 98.2 9.4E-06 3.2E-10 77.7 10.9 93 87-180 226-333 (370)
193 2hr2_A Hypothetical protein; a 98.1 1.7E-05 5.9E-10 64.2 10.2 63 86-148 13-86 (159)
194 2if4_A ATFKBP42; FKBP-like, al 98.1 7E-06 2.4E-10 77.7 8.9 92 86-180 181-290 (338)
195 1dce_A Protein (RAB geranylger 98.1 0.00018 6.2E-09 72.9 19.1 161 411-575 44-231 (567)
196 2l6j_A TPR repeat-containing p 98.0 6E-06 2.1E-10 63.5 5.2 95 465-561 3-103 (111)
197 1klx_A Cysteine rich protein B 98.0 7.6E-05 2.6E-09 59.9 11.3 110 99-216 10-127 (138)
198 2l6j_A TPR repeat-containing p 98.0 1.1E-05 3.7E-10 62.0 5.9 93 86-180 6-104 (111)
199 2kat_A Uncharacterized protein 98.0 5.4E-05 1.8E-09 58.6 10.0 80 449-530 3-82 (115)
200 2kat_A Uncharacterized protein 97.9 2.7E-05 9.1E-10 60.3 8.0 78 101-180 2-79 (115)
201 1na3_A Designed protein CTPR2; 97.9 0.00016 5.5E-09 52.8 11.3 82 466-549 9-90 (91)
202 1zu2_A Mitochondrial import re 97.8 2.4E-05 8.2E-10 63.2 6.2 97 94-192 12-130 (158)
203 3n71_A Histone lysine methyltr 97.8 3.8E-05 1.3E-09 75.9 8.8 122 129-250 319-464 (490)
204 1na3_A Designed protein CTPR2; 97.8 0.00018 6.1E-09 52.6 10.1 80 86-167 11-90 (91)
205 3n71_A Histone lysine methyltr 97.8 0.00013 4.4E-09 72.1 11.2 97 468-564 353-463 (490)
206 1zu2_A Mitochondrial import re 97.7 0.0001 3.5E-09 59.5 7.8 87 442-530 13-120 (158)
207 3ma5_A Tetratricopeptide repea 97.7 9.2E-05 3.1E-09 55.5 7.1 62 118-180 6-67 (100)
208 3ma5_A Tetratricopeptide repea 97.6 0.00036 1.2E-08 52.2 9.3 65 465-530 6-70 (100)
209 3bee_A Putative YFRE protein; 97.3 0.0024 8.2E-08 46.7 10.4 68 500-568 5-75 (93)
210 2kc7_A BFR218_protein; tetratr 97.3 0.00079 2.7E-08 50.1 7.4 82 89-180 5-87 (99)
211 2kc7_A BFR218_protein; tetratr 97.2 0.00037 1.3E-08 51.9 5.3 57 473-530 7-64 (99)
212 3ly7_A Transcriptional activat 97.2 0.0051 1.8E-07 57.2 13.2 152 115-294 190-346 (372)
213 3ly7_A Transcriptional activat 97.1 0.0096 3.3E-07 55.4 13.9 65 500-566 276-340 (372)
214 3lvg_A Clathrin heavy chain 1; 97.0 0.00078 2.7E-08 63.9 6.2 231 65-311 64-324 (624)
215 3qww_A SET and MYND domain-con 97.0 0.0037 1.3E-07 60.6 10.8 86 443-528 310-409 (433)
216 1pc2_A Mitochondria fission pr 97.0 0.0055 1.9E-07 48.8 9.5 82 447-530 14-100 (152)
217 3mkq_A Coatomer beta'-subunit; 96.9 0.05 1.7E-06 58.1 19.9 156 91-282 606-762 (814)
218 3lvg_A Clathrin heavy chain 1; 96.9 3E-05 1E-09 73.3 -4.5 245 83-346 53-324 (624)
219 3bee_A Putative YFRE protein; 96.9 0.014 4.7E-07 42.6 10.5 63 117-180 4-69 (93)
220 3qwp_A SET and MYND domain-con 96.8 0.011 3.8E-07 57.4 12.6 93 438-530 294-400 (429)
221 3qww_A SET and MYND domain-con 96.8 0.002 6.7E-08 62.6 6.7 82 132-213 311-409 (433)
222 3mkq_A Coatomer beta'-subunit; 96.7 0.067 2.3E-06 57.1 19.4 153 164-352 609-762 (814)
223 3qwp_A SET and MYND domain-con 96.7 0.0075 2.6E-07 58.5 10.3 88 127-214 295-399 (429)
224 3u64_A Protein TP_0956; tetrat 96.6 0.17 5.9E-06 45.0 17.4 66 503-568 201-272 (301)
225 3mkq_B Coatomer subunit alpha; 96.6 0.17 5.7E-06 41.4 16.0 100 165-282 16-115 (177)
226 2v5f_A Prolyl 4-hydroxylase su 96.5 0.017 5.8E-07 43.2 8.9 71 85-156 6-82 (104)
227 3u64_A Protein TP_0956; tetrat 96.4 0.22 7.7E-06 44.3 16.6 85 202-288 179-272 (301)
228 1pc2_A Mitochondria fission pr 96.4 0.036 1.2E-06 44.1 10.4 82 483-566 15-101 (152)
229 2v5f_A Prolyl 4-hydroxylase su 96.3 0.036 1.2E-06 41.3 10.1 73 465-538 4-82 (104)
230 4h7y_A Dual specificity protei 96.3 0.027 9.3E-07 44.1 9.1 58 514-572 73-130 (161)
231 4h7y_A Dual specificity protei 96.2 0.059 2E-06 42.3 10.2 102 151-253 10-126 (161)
232 3mkq_B Coatomer subunit alpha; 96.1 0.45 1.5E-05 38.9 17.2 101 231-352 15-115 (177)
233 1wy6_A Hypothetical protein ST 95.8 0.46 1.6E-05 36.4 15.4 65 502-567 92-156 (172)
234 1nzn_A CGI-135 protein, fissio 95.8 0.072 2.5E-06 40.7 9.1 82 448-530 18-103 (126)
235 4ady_A RPN2, 26S proteasome re 95.6 2.9 0.0001 44.2 34.9 256 265-529 383-657 (963)
236 1nzn_A CGI-135 protein, fissio 94.7 0.37 1.3E-05 36.8 10.1 83 482-566 17-104 (126)
237 1wy6_A Hypothetical protein ST 94.5 1.2 4.2E-05 34.1 15.4 135 130-286 18-155 (172)
238 3ffl_A Anaphase-promoting comp 94.3 0.45 1.5E-05 38.2 10.0 118 86-213 22-149 (167)
239 4gns_B Protein CSD3, chitin bi 94.1 0.23 7.7E-06 51.3 10.3 54 473-527 344-397 (754)
240 3o48_A Mitochondria fission 1 94.1 0.68 2.3E-05 35.5 10.4 68 498-565 37-107 (134)
241 1y8m_A FIS1; mitochondria, unk 93.9 1.8 6E-05 33.8 12.3 68 463-530 36-106 (144)
242 4ady_A RPN2, 26S proteasome re 93.5 9 0.00031 40.6 33.5 256 230-494 383-657 (963)
243 4fhn_B Nucleoporin NUP120; pro 93.3 2.8 9.5E-05 46.4 17.8 168 124-312 817-992 (1139)
244 4b4t_P 26S proteasome regulato 93.0 6.9 0.00024 37.9 20.2 185 98-283 30-245 (445)
245 4gns_B Protein CSD3, chitin bi 92.8 2.3 8E-05 43.9 15.1 54 508-562 344-397 (754)
246 2ff4_A Probable regulatory pro 92.1 0.83 2.8E-05 43.5 10.3 74 468-542 173-251 (388)
247 3o48_A Mitochondria fission 1 91.2 2.4 8.4E-05 32.5 9.9 69 462-530 36-107 (134)
248 2ff4_A Probable regulatory pro 90.8 2 6.8E-05 40.9 11.4 72 431-503 171-247 (388)
249 1y8m_A FIS1; mitochondria, unk 90.8 4.8 0.00016 31.3 11.9 68 499-566 37-107 (144)
250 2wpv_A GET4, UPF0363 protein Y 90.4 10 0.00035 34.4 18.3 39 90-143 19-57 (312)
251 3ffl_A Anaphase-promoting comp 89.5 2.2 7.4E-05 34.3 8.7 113 437-562 26-148 (167)
252 4fhn_B Nucleoporin NUP120; pro 89.2 6.1 0.00021 43.7 15.2 151 189-346 815-991 (1139)
253 1zbp_A Hypothetical protein VP 88.4 4.3 0.00015 35.6 10.5 115 439-565 5-129 (273)
254 1v54_E Cytochrome C oxidase po 87.5 2.7 9.3E-05 30.3 7.1 63 481-544 25-87 (109)
255 4b4t_P 26S proteasome regulato 87.4 22 0.00074 34.4 21.8 95 435-529 141-246 (445)
256 3lpz_A GET4 (YOR164C homolog); 85.8 21 0.00071 32.6 21.7 81 254-353 134-214 (336)
257 3txn_A 26S proteasome regulato 83.6 30 0.001 32.6 22.1 130 293-423 21-166 (394)
258 1v54_E Cytochrome C oxidase po 81.3 13 0.00045 26.8 9.5 61 446-508 25-86 (109)
259 3txn_A 26S proteasome regulato 80.9 38 0.0013 31.9 26.2 93 226-318 104-208 (394)
260 4b4t_R RPN7, 26S proteasome re 80.7 11 0.00036 36.4 10.7 61 188-248 133-195 (429)
261 2y69_E Cytochrome C oxidase su 80.5 7 0.00024 29.9 7.1 63 481-544 68-130 (152)
262 3lpz_A GET4 (YOR164C homolog); 80.4 35 0.0012 31.2 20.7 83 218-319 133-215 (336)
263 1zbp_A Hypothetical protein VP 78.2 8 0.00027 33.9 7.9 56 474-530 5-60 (273)
264 4b4t_S RPN3, 26S proteasome re 77.9 20 0.00067 35.1 11.3 130 86-215 138-299 (523)
265 4b4t_R RPN7, 26S proteasome re 77.9 27 0.00091 33.5 12.5 60 121-180 133-194 (429)
266 2p58_C Putative type III secre 77.6 17 0.00059 26.1 8.3 48 512-565 51-98 (116)
267 2y69_E Cytochrome C oxidase su 77.1 23 0.00078 27.2 9.5 62 446-508 68-129 (152)
268 2uwj_G Type III export protein 76.1 17 0.00057 26.1 7.4 49 476-530 49-97 (115)
269 1qsa_A Protein (soluble lytic 73.3 82 0.0028 31.8 35.2 351 156-559 74-436 (618)
270 1qsa_A Protein (soluble lytic 73.3 82 0.0028 31.8 37.1 336 120-489 73-436 (618)
271 2p58_C Putative type III secre 71.7 25 0.00087 25.3 8.4 46 233-284 52-97 (116)
272 2wpv_A GET4, UPF0363 protein Y 71.4 59 0.002 29.4 21.6 80 325-423 133-215 (312)
273 3esl_A Checkpoint serine/threo 70.0 47 0.0016 27.6 10.1 53 377-429 95-148 (202)
274 3esl_A Checkpoint serine/threo 66.8 55 0.0019 27.2 10.7 54 306-359 94-148 (202)
275 2zu6_B Programmed cell death p 58.0 62 0.0021 29.2 9.6 72 470-542 170-243 (307)
276 3eiq_C Programmed cell death p 56.5 1.2E+02 0.0042 27.9 12.5 63 399-462 220-284 (358)
277 1wdy_A 2-5A-dependent ribonucl 55.8 1E+02 0.0034 26.8 11.1 18 162-179 10-27 (285)
278 2uwj_G Type III export protein 55.6 55 0.0019 23.6 8.9 51 265-321 48-98 (115)
279 4gq2_M Nucleoporin NUP120; bet 55.0 1.1E+02 0.0037 33.0 12.6 129 125-270 816-950 (950)
280 4a1g_A Mitotic checkpoint seri 52.8 83 0.0028 24.8 9.7 27 400-426 105-131 (152)
281 3kae_A CDC27, possible protein 52.3 62 0.0021 26.1 7.3 62 510-571 71-149 (242)
282 4b4t_S RPN3, 26S proteasome re 51.9 1.1E+02 0.0038 29.9 10.7 62 119-180 231-296 (523)
283 2zu6_B Programmed cell death p 47.2 81 0.0028 28.4 8.6 25 399-423 169-193 (307)
284 4a1g_A Mitotic checkpoint seri 46.0 1.1E+02 0.0037 24.1 9.7 48 310-357 84-132 (152)
285 2ion_A PDCD4, programmed cell 45.5 1E+02 0.0035 24.3 7.9 65 433-498 11-77 (152)
286 3ltm_A Alpha-REP4; protein eng 45.1 1.3E+02 0.0044 24.8 19.1 17 395-411 125-141 (211)
287 2wvi_A Mitotic checkpoint seri 44.4 1.2E+02 0.0041 24.2 9.7 50 380-429 79-129 (164)
288 2d2s_A Exocyst complex compone 43.6 1.2E+02 0.0041 26.0 8.8 91 87-180 21-117 (235)
289 2nsz_A Programmed cell death p 42.6 1.1E+02 0.0037 23.2 9.3 25 434-458 10-34 (129)
290 1wdy_A 2-5A-dependent ribonucl 42.2 1.7E+02 0.0057 25.3 14.9 48 303-350 191-240 (285)
291 3mv2_A Coatomer subunit alpha; 39.1 2.2E+02 0.0075 25.7 10.1 51 481-531 185-237 (325)
292 2d2s_A Exocyst complex compone 38.6 1.9E+02 0.0064 24.8 9.5 21 403-423 25-45 (235)
293 4gq2_M Nucleoporin NUP120; bet 38.4 2.3E+02 0.0078 30.5 11.9 48 258-305 899-950 (950)
294 2wvi_A Mitotic checkpoint seri 38.3 1.5E+02 0.0052 23.7 10.4 54 485-538 79-133 (164)
295 1bpo_A Protein (clathrin); cla 37.3 1.9E+02 0.0066 27.7 9.5 139 98-248 343-483 (494)
296 4aez_C MAD3, mitotic spindle c 36.7 1.7E+02 0.0057 24.8 8.2 52 308-359 131-183 (223)
297 3ltm_A Alpha-REP4; protein eng 36.6 1.8E+02 0.006 23.9 19.9 16 360-375 156-171 (211)
298 4aez_C MAD3, mitotic spindle c 35.5 1.4E+02 0.0048 25.3 7.6 47 380-426 133-180 (223)
299 3kea_A K1L; tropism, ANK repea 34.1 2.3E+02 0.0077 24.8 9.7 8 166-173 40-47 (285)
300 3bu8_A Telomeric repeat-bindin 33.8 1.4E+02 0.0049 25.0 7.0 95 85-180 18-140 (235)
301 3eiq_C Programmed cell death p 33.5 2.9E+02 0.0099 25.5 16.1 76 469-545 220-297 (358)
302 2ijq_A Hypothetical protein; s 33.2 1.8E+02 0.0063 23.1 8.2 53 512-564 43-103 (161)
303 2nsz_A Programmed cell death p 32.5 1.6E+02 0.0055 22.3 8.3 22 331-352 12-33 (129)
304 3pvs_A Replication-associated 30.9 3.6E+02 0.012 25.8 13.6 35 374-408 268-302 (447)
305 2ion_A PDCD4, programmed cell 29.3 2.1E+02 0.0071 22.5 8.3 22 331-352 14-35 (152)
306 3kea_A K1L; tropism, ANK repea 28.8 2.9E+02 0.01 24.1 9.7 11 128-138 68-78 (285)
307 3ubw_A 14-3-3E, 14-3-3 protein 28.1 3E+02 0.01 23.9 10.1 170 360-529 30-227 (261)
308 2xig_A Ferric uptake regulatio 27.8 2.1E+02 0.0071 22.3 7.2 67 343-410 9-75 (150)
309 2crb_A Nuclear receptor bindin 26.9 1.2E+02 0.0041 21.4 4.6 24 504-527 18-41 (97)
310 3hra_A Ankyrin repeat family p 26.5 2.5E+02 0.0086 22.5 9.3 82 93-180 11-95 (201)
311 3bu8_A Telomeric repeat-bindin 25.1 2.6E+02 0.0089 23.5 7.1 49 100-148 88-143 (235)
312 3hra_A Ankyrin repeat family p 24.8 2.7E+02 0.0092 22.3 9.7 14 166-179 14-27 (201)
313 3eu9_A Huntingtin-interacting 24.7 2.8E+02 0.0097 22.9 8.4 223 126-358 13-239 (240)
314 3pvs_A Replication-associated 24.2 4.7E+02 0.016 24.9 14.2 54 443-496 267-325 (447)
315 2b7e_A PRE-mRNA processing pro 23.4 83 0.0028 20.0 3.1 29 203-231 3-31 (59)
316 2fe3_A Peroxide operon regulat 23.2 2.2E+02 0.0076 21.9 6.6 43 368-410 28-70 (145)
317 3jxi_A Vanilloid receptor-rela 22.5 70 0.0024 27.6 3.9 19 233-251 14-32 (260)
318 2cos_A Serine/threonine protei 22.5 1E+02 0.0035 19.1 3.2 18 545-562 29-48 (54)
319 1ya0_A SMG-7 transcript varian 22.2 4.9E+02 0.017 25.3 10.0 78 434-513 155-232 (497)
320 1bpo_A Protein (clathrin); cla 22.1 5.3E+02 0.018 24.8 11.0 142 409-563 342-483 (494)
321 3t8k_A Uncharacterized protein 21.9 3.1E+02 0.011 22.0 7.9 23 302-324 46-68 (186)
322 3ltj_A Alpharep-4; protein eng 21.9 3.2E+02 0.011 22.0 19.8 186 105-307 14-199 (201)
323 2ijq_A Hypothetical protein; s 21.8 3E+02 0.01 21.8 8.6 55 476-530 42-104 (161)
324 1ya0_A SMG-7 transcript varian 21.7 4.8E+02 0.016 25.4 9.8 74 124-198 157-232 (497)
325 1mzb_A Ferric uptake regulatio 21.6 2.2E+02 0.0075 21.6 6.2 58 353-411 10-68 (136)
326 1ug3_A EIF4GI, eukaryotic prot 21.2 2.1E+02 0.0073 26.1 7.0 23 261-283 16-38 (339)
327 2cwy_A Hypothetical protein TT 21.1 1.8E+02 0.0063 20.5 5.0 50 513-564 13-67 (94)
328 3t8k_A Uncharacterized protein 20.9 3.3E+02 0.011 21.9 8.1 22 198-219 47-68 (186)
329 4ets_A Ferric uptake regulatio 20.2 1.8E+02 0.0062 23.1 5.5 68 101-169 14-84 (162)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.7e-42 Score=359.99 Aligned_cols=477 Identities=11% Similarity=0.041 Sum_probs=407.1
Q ss_pred CcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043144 83 EDFESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLIS 162 (580)
Q Consensus 83 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 162 (580)
+...|+.++..+.+.|++++|+.+|++++.. .|+..++..++.+|.+.|++++|..+|+.+... ++++.+++.++.
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 158 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAF 158 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHH
Confidence 3457899999999999999999999999853 467788899999999999999999999988654 678999999999
Q ss_pred HHHhcCChhHHHHHHHHc-CC-----------------CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhH
Q 043144 163 GYCRLGEIDNALQVLERM-SV-----------------APDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITY 224 (580)
Q Consensus 163 ~~~~~g~~~~A~~~~~~~-~~-----------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 224 (580)
+|.+.|++++|+++|+++ +. +++..+|+.++.+|.+.|++++|+++|+++.+.+ +.+...+
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~ 237 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAF 237 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHH
Confidence 999999999999999965 21 1247789999999999999999999999999865 2245555
Q ss_pred HHHHHHHHhcCCHhHHH--HH-HHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 043144 225 TILIEATCKESGVGQAM--KL-LDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSM 301 (580)
Q Consensus 225 ~~li~~~~~~g~~~~A~--~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 301 (580)
..++..+...+..+.+. .+ +..+...+..+...+|+.++..|.+.|++++|.++|+++.+. +++..+|..++.+|
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 315 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTL 315 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHH
Confidence 55555444333222221 11 444444443444556777788999999999999999999876 58999999999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 043144 302 CSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAI 381 (580)
Q Consensus 302 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 381 (580)
.+.|++++|..+|+++.+.+ +.+..++..++.++.+.|++++|..+++++.+.. +.+..++..++..|.+.|++++|.
T Consensus 316 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 393 (597)
T 2xpi_A 316 FVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEAR 393 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHH
Confidence 99999999999999999875 4477899999999999999999999999998764 347889999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 043144 382 EYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKG 461 (580)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 461 (580)
++|+++.+..+ .+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+..
T Consensus 394 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 471 (597)
T 2xpi_A 394 RYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF 471 (597)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999987643 367799999999999999999999999998876 4578899999999999999999999999999864
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 043144 462 LKPDTITYSSLVGGLSREGKVDEAIKLFHDLERL----GVRPN--VITYNSIMLGLCKARQTYRAIDILADMVTRSCKPT 535 (580)
Q Consensus 462 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 535 (580)
+.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.++++.+.+ +.+
T Consensus 472 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~ 549 (597)
T 2xpi_A 472 -QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TND 549 (597)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCC
T ss_pred -CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCC
Confidence 457899999999999999999999999999765 55677 7899999999999999999999999999875 668
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchh
Q 043144 536 EATYTILIEGIAYEGLAKEALDLLNQLCSRGVVKKSS 572 (580)
Q Consensus 536 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~ 572 (580)
..+|..++.+|...|++++|.++++++.+..+..+..
T Consensus 550 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 586 (597)
T 2xpi_A 550 ANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMA 586 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHH
Confidence 9999999999999999999999999999987554433
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.8e-39 Score=338.61 Aligned_cols=461 Identities=12% Similarity=-0.013 Sum_probs=380.7
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 043144 95 VRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNAL 174 (580)
Q Consensus 95 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 174 (580)
...|.+..+...+..+ ..++...|+.++..|.+.|++++|..+|+++... .|+..++..++.+|.+.|++++|+
T Consensus 64 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~ 137 (597)
T 2xpi_A 64 STDGSFLKERNAQNTD----SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAK 137 (597)
T ss_dssp ----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccCccCCCCCccccc----hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHH
Confidence 3445555565555543 3357889999999999999999999999999865 467889999999999999999999
Q ss_pred HHHHHc-CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC---------------CCCCChhhHHHHHHHHHhcCCHh
Q 043144 175 QVLERM-SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEK---------------ECYPDVITYTILIEATCKESGVG 238 (580)
Q Consensus 175 ~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------------~~~~~~~~~~~li~~~~~~g~~~ 238 (580)
.+|+++ ..+++..+++.++.+|.+.|++++|+++|+++... +.+++..+|+.++.+|.+.|+++
T Consensus 138 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 138 CLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp HHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHH
Confidence 999998 56788999999999999999999999999853222 12335789999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHH--H-HHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 043144 239 QAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIK--F-LNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLA 315 (580)
Q Consensus 239 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~-~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 315 (580)
+|.++|+++.+.++. +...+..++..+...+..+.+.. + +..+...+..+...+|+.++..|.+.|++++|.++|+
T Consensus 218 ~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 218 RAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296 (597)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 999999999987532 56667767665544433322221 1 3444444334455667777888999999999999999
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 043144 316 EMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPD 395 (580)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 395 (580)
++.+. +++..++..++.+|.+.|++++|..+|+++.+.++. +..++..++.++.+.|++++|..+++++.+.. ..+
T Consensus 297 ~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~ 372 (597)
T 2xpi_A 297 SINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEK 372 (597)
T ss_dssp TSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTS
T ss_pred HhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-ccc
Confidence 99876 578999999999999999999999999999987644 78899999999999999999999999998754 347
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043144 396 IVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGG 475 (580)
Q Consensus 396 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 475 (580)
..++..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|..++.+
T Consensus 373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 450 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQ 450 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHH
Confidence 7899999999999999999999999998755 4568899999999999999999999999999875 4578899999999
Q ss_pred HHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHhc
Q 043144 476 LSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTR----SCKPT--EATYTILIEGIAYE 549 (580)
Q Consensus 476 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~ 549 (580)
|.+.|++++|.++|+++.+..+. +..+|..++.+|.+.|++++|.++++++.+. +..|+ ..+|..++.+|.+.
T Consensus 451 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 529 (597)
T 2xpi_A 451 HMQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL 529 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHh
Confidence 99999999999999999876544 7899999999999999999999999999876 55677 78999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCC
Q 043144 550 GLAKEALDLLNQLCSRGVVK 569 (580)
Q Consensus 550 g~~~~A~~~~~~~~~~g~~~ 569 (580)
|++++|.++++++.+.++..
T Consensus 530 g~~~~A~~~~~~~~~~~p~~ 549 (597)
T 2xpi_A 530 KMYDAAIDALNQGLLLSTND 549 (597)
T ss_dssp TCHHHHHHHHHHHHHHSSCC
T ss_pred cCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999987543
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.1e-29 Score=249.69 Aligned_cols=122 Identities=12% Similarity=0.140 Sum_probs=57.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 043144 91 LRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEI 170 (580)
Q Consensus 91 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 170 (580)
...+.+.|++++|++.++++... .|.+...+..+...+...|++++|...++...+.. |.+..+|..++..|.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ-EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 34445555555555555555443 23333444444445555555555555555544433 34444555555555555555
Q ss_pred hHHHHHHHHc-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043144 171 DNALQVLERM-SVAP-DVVTYNTILRTLCDSGKLNLAMEVLHKQLE 214 (580)
Q Consensus 171 ~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 214 (580)
++|+..|+++ ...| +..+|..++.++.+.|++++|.+.|+++++
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 129 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ 129 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555544 1112 223344444444444444444444444443
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.7e-29 Score=248.29 Aligned_cols=382 Identities=15% Similarity=0.065 Sum_probs=336.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc--CCCCCcchHHHHHHHHHhcCCh
Q 043144 125 LIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM--SVAPDVVTYNTILRTLCDSGKL 202 (580)
Q Consensus 125 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~ 202 (580)
++..+.+.|++++|.+.++.+.+.. |.+...+..+...+...|++++|...++.. ..+.+..+|..++.++.+.|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 4566889999999999999998876 667788888999999999999999999887 4456788999999999999999
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHh
Q 043144 203 NLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDM 282 (580)
Q Consensus 203 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 282 (580)
++|++.|+++++.. +.+..+|..++..+.+.|++++|.+.|+++.+..+ .+...+..+...+...|++++|...|+++
T Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999999864 33566899999999999999999999999998742 25667888999999999999999999999
Q ss_pred hhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHh
Q 043144 283 PSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSL 362 (580)
Q Consensus 283 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 362 (580)
.+.. +.+..+|..+...+...|++++|...|+++++.+ +.+...+..+...+...|++++|...+++..+..+. +..
T Consensus 162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~ 238 (388)
T 1w3b_A 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAV 238 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHH
Confidence 8764 4567899999999999999999999999999875 446778999999999999999999999999887443 678
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043144 363 SYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLS 442 (580)
Q Consensus 363 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 442 (580)
++..+...+...|++++|+..|+++.+.++. +..++..+..++.+.|++++|...|+++.+.. +.+..++..+...+.
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHH
Confidence 8999999999999999999999999987433 56789999999999999999999999998875 567889999999999
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 043144 443 KVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQ 516 (580)
Q Consensus 443 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 516 (580)
..|++++|...++++.+.. +.+..++..++..+.+.|++++|...|+++.+..+. +...|..+...+...|+
T Consensus 317 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTCC
T ss_pred HcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHhHHHHHHHccC
Confidence 9999999999999998763 446789999999999999999999999999986544 68889899888877664
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=1.5e-28 Score=245.14 Aligned_cols=184 Identities=15% Similarity=0.204 Sum_probs=101.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------hHHHHHHHHHHHhCCCCCCHHHH
Q 043144 364 YNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGK---------VDVAVEILNQLSNKHCSPVLITY 434 (580)
Q Consensus 364 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---------~~~A~~~~~~~~~~~~~~~~~~~ 434 (580)
++.+|.+|++.|++++|+++|++|.+.|+.||..+|+.||.+|++.+. ++.|.++|++|...++.||..+|
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 444445555555555555555555555555555555555555444332 34555555555555555555555
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 043144 435 NTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKA 514 (580)
Q Consensus 435 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 514 (580)
+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043144 515 RQTYRAIDILADMVTRSCKPTEATYTILIEGIA 547 (580)
Q Consensus 515 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 547 (580)
|++++|.+++++|.+.+..|+..||..++..|.
T Consensus 189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp TCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 555555555555555555555555555555554
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=2.5e-28 Score=243.59 Aligned_cols=185 Identities=15% Similarity=0.245 Sum_probs=108.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCC---------HHHHHHHHHHHHHCCCCCCHHHH
Q 043144 329 FNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKK---------MDRAIEYLEIMVSRGCYPDIVTY 399 (580)
Q Consensus 329 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~A~~~~~~~~~~~~~~~~~~~ 399 (580)
++.++++|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.+. +++|.++|++|.+.|+.||..+|
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 444455555555555555555555555555555555555555543332 45566666666666666666666
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 043144 400 NTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSRE 479 (580)
Q Consensus 400 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 479 (580)
+.+|.+|++.|++++|.++|++|.+.++.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.|+.+|++.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 043144 480 GKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCK 513 (580)
Q Consensus 480 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 513 (580)
|++++|.++|++|.+.+..|+..||+.++..|..
T Consensus 189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 6666666666666655666666666666555543
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.7e-26 Score=233.44 Aligned_cols=436 Identities=12% Similarity=0.024 Sum_probs=291.8
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043144 86 ESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYC 165 (580)
Q Consensus 86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 165 (580)
.+......+.+.|++++|+..|++++... |+..++..++.++.+.|++++|...|+++.+.+ |.+..++..++.+|.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 56777889999999999999999998864 588889999999999999999999999998876 667888999999999
Q ss_pred hcCChhHHHHHHHHc--CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHH
Q 043144 166 RLGEIDNALQVLERM--SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKL 243 (580)
Q Consensus 166 ~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 243 (580)
..|++++|+..|+++ ..+++......++..+........+.+.+..+...+..|+...+..-...............+
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 999999999999988 223444444455554444333333333332221111111111111100001111111111111
Q ss_pred HHHHHHcCC---------CCCHhHHHHHHHHHHh---cCCHHHHHHHHHHhhh-----CCC--------CCCHHHHHHHH
Q 043144 244 LDEMRNKGC---------IPDVVTYNVLVNGICK---EGRLDEAIKFLNDMPS-----YGC--------QPNVITHNIIL 298 (580)
Q Consensus 244 ~~~~~~~~~---------~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~-----~~~--------~~~~~~~~~ll 298 (580)
...+..... +.+...+..+...+.. .|++++|+.+|+++.+ ... +.+...+..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 111111100 1124445455555554 7888888888888766 211 12345666777
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHH
Q 043144 299 RSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMD 378 (580)
Q Consensus 299 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 378 (580)
..+...|++++|...++.+.+.. |+...+..+...+...|++++|...++++.+.... +...+..+...+...|+++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHH
Confidence 77888888888888888887764 23667777888888888888888888887776433 5667777888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 043144 379 RAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMR 458 (580)
Q Consensus 379 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 458 (580)
+|...++++.+..+. +...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.
T Consensus 322 ~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 322 QAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp HHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 888888888776433 45677777888888888888888888877654 3345677777888888888888888888876
Q ss_pred HCCCC-CC----HHHHHHHHHHHHh---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043144 459 TKGLK-PD----TITYSSLVGGLSR---EGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTR 530 (580)
Q Consensus 459 ~~~~~-p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 530 (580)
..... ++ ...+..+...+.. .|++++|...++++.+..+. +..++..++.+|...|++++|...++++.+.
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR-SEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 54211 11 2367777888888 88888888888888765433 6677778888888888888888888888876
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.9e-26 Score=234.24 Aligned_cols=444 Identities=10% Similarity=0.008 Sum_probs=333.0
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc--CCCCCcchHHHHHHHH
Q 043144 119 IIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM--SVAPDVVTYNTILRTL 196 (580)
Q Consensus 119 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~ 196 (580)
...+...+..+.+.|++++|...|+++.... |++.+|..++.+|...|++++|+..|+++ ..|.+..+|..++.++
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 3467778888999999999999999999875 58999999999999999999999999988 2345567899999999
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHH---HHHhcCCHH
Q 043144 197 CDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVN---GICKEGRLD 273 (580)
Q Consensus 197 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~g~~~ 273 (580)
.+.|++++|...|+++...+. ++......++..+........+.+.+..+...+..|+...+..... .........
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 999999999999999998763 3444555555554444333333333332222211111111111100 001111111
Q ss_pred HHHHHHHHhhhC------CCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHH-----cCC--------CCChhhHHH
Q 043144 274 EAIKFLNDMPSY------GCQPNVITHNIILRSMCS---TGRWMDAERLLAEMVL-----KGC--------SPSVVTFNI 331 (580)
Q Consensus 274 ~A~~~~~~~~~~------~~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~ 331 (580)
.+...+...... ..+.+...+......+.. .|++++|...|+++.+ ... +.+...+..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 112222111110 002234555555555554 8999999999999988 311 223567888
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 043144 332 LINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGK 411 (580)
Q Consensus 332 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 411 (580)
+...+...|++++|...++++.+.... ...+..+...+...|++++|...++++.+.... +..++..+...+...|+
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCC
Confidence 899999999999999999999987544 888899999999999999999999999886433 56788999999999999
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 043144 412 VDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHD 491 (580)
Q Consensus 412 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 491 (580)
+++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...+++
T Consensus 320 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 320 YDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp TTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999998876 3456788899999999999999999999998763 34677889999999999999999999999
Q ss_pred HHhCCCC-CC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043144 492 LERLGVR-PN----VITYNSIMLGLCK---ARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLC 563 (580)
Q Consensus 492 ~~~~~~~-~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 563 (580)
+.+..+. ++ ...+..++.+|.. .|++++|...++++++.. +.+..++..++.+|...|++++|.+.++++.
T Consensus 398 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp HHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9764332 11 3488899999999 999999999999999874 6678899999999999999999999999999
Q ss_pred hCCCCCch
Q 043144 564 SRGVVKKS 571 (580)
Q Consensus 564 ~~g~~~~~ 571 (580)
+.++..+.
T Consensus 477 ~~~~~~~~ 484 (514)
T 2gw1_A 477 DLARTMEE 484 (514)
T ss_dssp HHCSSHHH
T ss_pred HhccccHH
Confidence 98754433
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.95 E-value=1.8e-24 Score=222.31 Aligned_cols=433 Identities=14% Similarity=0.087 Sum_probs=266.3
Q ss_pred ccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043144 85 FESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGY 164 (580)
Q Consensus 85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (580)
..+..+...+.+.|++++|+..|++++.. .|.+..++..++.+|.+.|++++|...|+++.+.+ |.+..++..++.++
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIEL-DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhh-CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 35677788888888888888888888876 45677888888888888888888888888888876 66778888888888
Q ss_pred HhcCChhHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCCHhHHHH
Q 043144 165 CRLGEIDNALQVLERMSVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKEC--YPDVITYTILIEATCKESGVGQAMK 242 (580)
Q Consensus 165 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~ 242 (580)
...|++++|+..|+.+...|+.. ...+..+...+....|...++.++.... .+........+..+....+.+.+..
T Consensus 104 ~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLSLNGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp HHHTCHHHHHHHHHHHC-------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHhcCCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 88888888888887554334322 2223445555556777777777765421 0111112233444555555555544
Q ss_pred HHHHHHHcCCCCCHh-HHHHHHHHHHhc--------CCHHHHHHHHHHhhhCCCCCCH-------HHHHHHHHHHHhcCC
Q 043144 243 LLDEMRNKGCIPDVV-TYNVLVNGICKE--------GRLDEAIKFLNDMPSYGCQPNV-------ITHNIILRSMCSTGR 306 (580)
Q Consensus 243 ~~~~~~~~~~~~~~~-~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~ 306 (580)
.+...... .+... ....+...+... |++++|..+|+++.+.. +.+. .++..+...+...|+
T Consensus 182 ~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~ 258 (537)
T 3fp2_A 182 SVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNN 258 (537)
T ss_dssp TSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhccc
Confidence 44333221 11111 233333333222 36677777777766543 2222 234555556666777
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 043144 307 WMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEI 386 (580)
Q Consensus 307 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 386 (580)
+++|...++.+.+.. |+...+..+...+...|++++|...++++.+.... +..++..+...+...|++++|+..+++
T Consensus 259 ~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~ 335 (537)
T 3fp2_A 259 LLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQK 335 (537)
T ss_dssp HHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 777777777776653 34566666777777777777777777776665332 566667777777777777777777777
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC----
Q 043144 387 MVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGL---- 462 (580)
Q Consensus 387 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~---- 462 (580)
+.+..+. +...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|...|+++.+...
T Consensus 336 a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 413 (537)
T 3fp2_A 336 AQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK 413 (537)
T ss_dssp HHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh
Confidence 7665322 34566667777777777777777777766654 33455666667777777777777777777654310
Q ss_pred -CCCHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043144 463 -KPDTITYSSLVGGLSRE----------GKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTR 530 (580)
Q Consensus 463 -~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 530 (580)
......+......+... |++++|...|+++.+..+. +...+..++.+|...|++++|.+.++++++.
T Consensus 414 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 414 IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR-SEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 01112233344555555 7777777777777655433 5666677777777777777777777777665
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=2.9e-24 Score=215.48 Aligned_cols=386 Identities=11% Similarity=0.056 Sum_probs=226.2
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc--CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043144 137 KATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM--SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLE 214 (580)
Q Consensus 137 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 214 (580)
.+...+..+.... |.++..+..++..|.+.|++++|+.+|+++ ..+.+..+|..++.++...|++++|+..|+++++
T Consensus 10 ~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 10 GVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3344444444443 455666666677777777777777777665 2234556666666666666777777766666666
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCH---hHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH
Q 043144 215 KECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDV---VTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNV 291 (580)
Q Consensus 215 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 291 (580)
.+ +.+...+..++..|.+.|++++|...|+.+.+... .+. ..+..++..+...
T Consensus 89 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~---------------------- 144 (450)
T 2y4t_A 89 LK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQ---------------------- 144 (450)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHH----------------------
T ss_pred cC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHH----------------------
Confidence 54 22455666666666666666666666666665421 123 4444443331100
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHH
Q 043144 292 ITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGF 371 (580)
Q Consensus 292 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 371 (580)
.+..+...+...|++++|...|+.+.+.. +.+...+..++.+|...|++++|...|+++.+... .+..++..+...|
T Consensus 145 -~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~ 221 (450)
T 2y4t_A 145 -RLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLY 221 (450)
T ss_dssp -HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 01112333555566666666666665543 33455566666666666666666666666655422 2455666666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH------------HHHHHhcCChHHHHHHHHHHHhCCCCCC-----HHHH
Q 043144 372 CKEKKMDRAIEYLEIMVSRGCYPDIVTYNTL------------LTALCKDGKVDVAVEILNQLSNKHCSPV-----LITY 434 (580)
Q Consensus 372 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~ 434 (580)
...|++++|+..|+++....+. +...+..+ ...+.+.|++++|...|+.+.+.. |+ ...|
T Consensus 222 ~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~ 298 (450)
T 2y4t_A 222 YQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSK 298 (450)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHH
Confidence 6666666666666666554221 22233322 677777888888888888877654 33 3467
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH----
Q 043144 435 NTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLG---- 510 (580)
Q Consensus 435 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~---- 510 (580)
..+..++.+.|++++|...++++.+.. +.+...|..++.+|...|++++|...++++.+..+. +...+..+..+
T Consensus 299 ~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~ 376 (450)
T 2y4t_A 299 ERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN-DQQIREGLEKAQRLL 376 (450)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHh
Confidence 777788888888888888888877653 336777888888888888888888888888775543 55666666533
Q ss_pred --------HHhcC-----CHHHHHHHHHHHHHcCCCCC-----------HHHHHHHHHHHHhcCCHHHHH
Q 043144 511 --------LCKAR-----QTYRAIDILADMVTRSCKPT-----------EATYTILIEGIAYEGLAKEAL 556 (580)
Q Consensus 511 --------~~~~g-----~~~~A~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~A~ 556 (580)
|...| +.+++.+.++++... +.|| ...+..+..+|...|+.+.+.
T Consensus 377 ~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~-~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~ 445 (450)
T 2y4t_A 377 KQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQ-WHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRK 445 (450)
T ss_dssp HHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHH-SCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred hcccchhHHHHhCCCccCCHHHHHHHHHHHHHH-hCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 33334 556777777763322 1222 236677777777777766543
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.95 E-value=1.4e-24 Score=223.14 Aligned_cols=441 Identities=14% Similarity=0.069 Sum_probs=341.5
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc--CCCCCcchHHHHHHHH
Q 043144 119 IIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM--SVAPDVVTYNTILRTL 196 (580)
Q Consensus 119 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~ 196 (580)
...+..++..+.+.|++++|...|+++.... |.++.++..++.+|.+.|++++|++.|+++ ..+.+..++..++.++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 4567888899999999999999999999887 678999999999999999999999999998 3345678899999999
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCC--CCCHhHHHHHHHHHHhcCCHHH
Q 043144 197 CDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGC--IPDVVTYNVLVNGICKEGRLDE 274 (580)
Q Consensus 197 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~ 274 (580)
...|++++|+..|+ .+... |+. ....+..+...+...+|...++.+..... .+........+..+....+.+.
T Consensus 104 ~~~g~~~~A~~~~~-~~~~~--~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSLN--GDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHcCCHHHHHHHHH-HHhcC--CCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 99999999999996 44332 222 12234455566677889999999865411 1111222344555667888888
Q ss_pred HHHHHHHhhhCCCCCCHH-HHHHHHHHHH--------hcCChHHHHHHHHHHHHcCCCCCh-------hhHHHHHHHHHh
Q 043144 275 AIKFLNDMPSYGCQPNVI-THNIILRSMC--------STGRWMDAERLLAEMVLKGCSPSV-------VTFNILINFLCR 338 (580)
Q Consensus 275 A~~~~~~~~~~~~~~~~~-~~~~ll~~~~--------~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~ 338 (580)
+...+...... .+... ....+...+. ..+++++|..+++.+.+.. +.+. .++..+...+..
T Consensus 179 ~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 179 EVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHh
Confidence 88777766543 23322 2233332222 2258999999999998764 2232 356777788899
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 043144 339 KGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEI 418 (580)
Q Consensus 339 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 418 (580)
.|++++|...++++.+. .|+...+..+...+...|++++|...++++.+..+. +..++..+...+...|++++|...
T Consensus 256 ~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp TTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Confidence 99999999999999987 445788899999999999999999999999886433 677899999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC-
Q 043144 419 LNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGV- 497 (580)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~- 497 (580)
++++.+.. +.+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...|+++.+..+
T Consensus 333 ~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 333 FQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 99998866 3456788999999999999999999999998864 44677899999999999999999999999864321
Q ss_pred ----CCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043144 498 ----RPNVITYNSIMLGLCKA----------RQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLC 563 (580)
Q Consensus 498 ----~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 563 (580)
......+..+..++... |++++|...++++++.. +.+..++..++.+|...|++++|.+.++++.
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 489 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSA 489 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 22344466677788888 99999999999999874 6778999999999999999999999999999
Q ss_pred hCCCCCchhHH
Q 043144 564 SRGVVKKSSAE 574 (580)
Q Consensus 564 ~~g~~~~~~~~ 574 (580)
+..+..+....
T Consensus 490 ~~~~~~~~~~~ 500 (537)
T 3fp2_A 490 ILARTMDEKLQ 500 (537)
T ss_dssp HHC--CHHHHH
T ss_pred HhCCCcHHHHH
Confidence 98766555433
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=4.6e-24 Score=213.99 Aligned_cols=388 Identities=14% Similarity=0.077 Sum_probs=226.2
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 043144 100 LEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLER 179 (580)
Q Consensus 100 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 179 (580)
...+...+..++.. .|.+...+..++..+.+.|++++|..+|+.+.+.. +.+..++..++.+|...|++++|+..|++
T Consensus 8 ~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 85 (450)
T 2y4t_A 8 SSGVDLGTENLYFQ-SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTK 85 (450)
T ss_dssp ----------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccccccccccccc-cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34555666666655 46677899999999999999999999999999875 67899999999999999999999999999
Q ss_pred c--CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-h---hhHHHHHHH------------HHhcCCHhHHH
Q 043144 180 M--SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPD-V---ITYTILIEA------------TCKESGVGQAM 241 (580)
Q Consensus 180 ~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~---~~~~~li~~------------~~~~g~~~~A~ 241 (580)
+ ..+.+..++..++.+|.+.|++++|.+.|+++.+.. |+ . ..+..++.. +...|++++|.
T Consensus 86 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~ 163 (450)
T 2y4t_A 86 VIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAI 163 (450)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 8 234567889999999999999999999999999865 43 3 556655444 45555555555
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 043144 242 KLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKG 321 (580)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 321 (580)
..|+.+.+.. +.+..++..++.+|.+.|++++|+.+|+++.+.. +.+..+|..++..+...|++++|...|+.+.+..
T Consensus 164 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 241 (450)
T 2y4t_A 164 AFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 241 (450)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 5555555442 1244455555555555555555555555554432 3344555555555555555555555555554432
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HH
Q 043144 322 CSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPD----IV 397 (580)
Q Consensus 322 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~ 397 (580)
+.+...+..+... . ....+..+...+...|++++|+..|+++.+..+. + ..
T Consensus 242 -p~~~~~~~~~~~~--------------~---------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~ 296 (450)
T 2y4t_A 242 -QDHKRCFAHYKQV--------------K---------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVR 296 (450)
T ss_dssp -TTCHHHHHHHHHH--------------H---------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHH
T ss_pred -CChHHHHHHHHHH--------------H---------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHH
Confidence 1122222222000 0 0000111255556666666666666666553211 1 23
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH---
Q 043144 398 TYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVG--- 474 (580)
Q Consensus 398 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~--- 474 (580)
.+..+..++.+.|++++|...++.+.+.. +.+...|..+..+|...|++++|...|+++.+.. +-+...+..+..
T Consensus 297 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 374 (450)
T 2y4t_A 297 SKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQR 374 (450)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHH
Confidence 45556666666666666666666655443 2345566666666666666666666666666532 123344444432
Q ss_pred ---------HHHhCC-----CHHHHHHHHHH-HHhCCCC--CCH-------HHHHHHHHHHHhcCCHHHH
Q 043144 475 ---------GLSREG-----KVDEAIKLFHD-LERLGVR--PNV-------ITYNSIMLGLCKARQTYRA 520 (580)
Q Consensus 475 ---------~~~~~g-----~~~~A~~~~~~-~~~~~~~--~~~-------~~~~~l~~~~~~~g~~~~A 520 (580)
.|...| +.+++.+.+++ ..+..+. |+. ..+..+..+|...++.+++
T Consensus 375 ~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 375 LLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp HHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred HhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 233333 55677777776 3343221 221 2555666666666665543
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.91 E-value=1.9e-20 Score=181.34 Aligned_cols=315 Identities=11% Similarity=0.046 Sum_probs=167.6
Q ss_pred hhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 043144 221 VITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRS 300 (580)
Q Consensus 221 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 300 (580)
+..+..+...+...|++++|...|+.+.+..+ .+...+..+...+...|++++|+..|+++.+.. +.+...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 45666777777788888888888888777642 356677777777788888888888887777653 3456677777777
Q ss_pred HHhcCChHHHHHHHHHHHHcCCC---CChhhHHHH------------HHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHH
Q 043144 301 MCSTGRWMDAERLLAEMVLKGCS---PSVVTFNIL------------INFLCRKGLLGRAIDILEKMPKHGCTPNSLSYN 365 (580)
Q Consensus 301 ~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 365 (580)
+...|++++|...++.+.+.. + .+...+..+ ...+...|++++|...++++.+..+. +...+.
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 158 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVW-DAELRE 158 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-chHHHH
Confidence 777788888888887777653 2 233333333 34444555555555555555443222 344444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC
Q 043144 366 PVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVG 445 (580)
Q Consensus 366 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 445 (580)
.+...+...|++++|...++++.+..+ .+..++..+...+...|++++|...++...+.. +.+...+..+...
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~----- 231 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQV----- 231 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH-----
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHH-----
Confidence 455555555555555555555544321 133444455555555555555555555544433 1112211111000
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHH
Q 043144 446 KTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNV----ITYNSIMLGLCKARQTYRAI 521 (580)
Q Consensus 446 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~ 521 (580)
. .......+...+...|++++|...++++.+..+. +. ..+..++.++...|++++|.
T Consensus 232 ------------~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 232 ------------K------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp ------------H------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ------------H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHH
Confidence 0 0000011233445555555555555555443322 21 12333445555555555555
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043144 522 DILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRG 566 (580)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 566 (580)
..++++++.. +.+..+|..++.++...|++++|.+.++++.+..
T Consensus 293 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 293 RICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 5555555442 3345555555555555555555555555555544
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.91 E-value=2.2e-20 Score=181.00 Aligned_cols=331 Identities=12% Similarity=0.063 Sum_probs=250.4
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 043144 185 DVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVN 264 (580)
Q Consensus 185 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 264 (580)
|+..+..++..+...|++++|+..|+++++.. +.+..++..+...+...|++++|...++.+.+... .+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-DFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcchHHHHHHH
Confidence 35678889999999999999999999999875 34678899999999999999999999999998742 36788999999
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCC---CCHHHHHHH------------HHHHHhcCChHHHHHHHHHHHHcCCCCChhhH
Q 043144 265 GICKEGRLDEAIKFLNDMPSYGCQ---PNVITHNII------------LRSMCSTGRWMDAERLLAEMVLKGCSPSVVTF 329 (580)
Q Consensus 265 ~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 329 (580)
.+...|++++|...|+++.+.. + .+...+..+ ...+...|++++|...++.+.+.. +.+...+
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 157 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELR 157 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHH
Confidence 9999999999999999998764 2 344555554 578889999999999999999874 4577889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 043144 330 NILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKD 409 (580)
Q Consensus 330 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 409 (580)
..+...+...|++++|...++++.+..+. +...+..+...+...|++++|...+++..+..+. +...+..+
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~------- 228 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHY------- 228 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHH-------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHH-------
Confidence 99999999999999999999999987543 7888999999999999999999999999876332 22222211
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhCCCHHHH
Q 043144 410 GKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDT----ITYSSLVGGLSREGKVDEA 485 (580)
Q Consensus 410 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~A 485 (580)
..+. .......+...+...|++++|...++++.+.. +.+. ..+..+...+...|++++|
T Consensus 229 ----------~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 229 ----------KQVK------KLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp ----------HHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ----------HHHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHH
Confidence 1111 01222334555666777777777777766543 1122 2244466677777777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043144 486 IKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIA 547 (580)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 547 (580)
...++++.+..+. +..++..++.+|...|++++|...++++++.. |.+...+..+..+..
T Consensus 292 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 292 IRICSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 7777777765432 56677777777777777777777777777652 444566666655543
No 15
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.90 E-value=3.2e-19 Score=180.40 Aligned_cols=364 Identities=13% Similarity=0.066 Sum_probs=232.5
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHH
Q 043144 103 GFKFLESMVYHGDIPDIIPCTSLIRGFCK----VGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCR----LGEIDNAL 174 (580)
Q Consensus 103 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 174 (580)
++..+......| +...+..+...|.. .+++++|..+|++..+.+ ++..+..|+..|.. .+++++|+
T Consensus 26 ~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 26 NLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp CHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 455566555543 66677777777777 788888888888887764 56677778888887 78888888
Q ss_pred HHHHHcCCCCCcchHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHhHHHHHHHH
Q 043144 175 QVLERMSVAPDVVTYNTILRTLCD----SGKLNLAMEVLHKQLEKECYPDVITYTILIEATCK----ESGVGQAMKLLDE 246 (580)
Q Consensus 175 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~ 246 (580)
+.|++.-...+...+..|...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|.+.|+.
T Consensus 100 ~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 176 (490)
T 2xm6_A 100 IWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSK 176 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 888877223456677777777777 677888888888777765 55666667777766 6677777777777
Q ss_pred HHHcCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHH
Q 043144 247 MRNKGCIPDVVTYNVLVNGICK----EGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCS----TGRWMDAERLLAEMV 318 (580)
Q Consensus 247 ~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~ 318 (580)
..+.+ +...+..+...|.. .++.++|..+|++..+.+ +...+..+...|.. .+++++|..+|+...
T Consensus 177 a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~ 250 (490)
T 2xm6_A 177 AAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSA 250 (490)
T ss_dssp HHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 77653 56667777777766 677777777777776643 45556666666654 566777777777766
Q ss_pred HcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHH
Q 043144 319 LKGCSPSVVTFNILINFLCR----KGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKE-----KKMDRAIEYLEIMVS 389 (580)
Q Consensus 319 ~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~ 389 (580)
+.+ +...+..+..+|.. .++.++|...|++..+.| ++..+..+...|... +++++|+.+|++..+
T Consensus 251 ~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~ 324 (490)
T 2xm6_A 251 EQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE 324 (490)
T ss_dssp TTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh
Confidence 553 34455556666655 666666666666665543 344555555555554 566666666666665
Q ss_pred CCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCC
Q 043144 390 RGCYPDIVTYNTLLTALCKDG---KVDVAVEILNQLSNKHCSPVLITYNTVIDGLSK----VGKTEQAMKLLEEMRTKGL 462 (580)
Q Consensus 390 ~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 462 (580)
.+ +...+..+...|...| ++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+
T Consensus 325 ~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~- 397 (490)
T 2xm6_A 325 QG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG- 397 (490)
T ss_dssp TT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred cC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC-
Confidence 42 3344555555555544 5556666666655542 34455555555555 555666666666655543
Q ss_pred CCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhCC
Q 043144 463 KPDTITYSSLVGGLSR----EGKVDEAIKLFHDLERLG 496 (580)
Q Consensus 463 ~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 496 (580)
+...+..|...|.. .+++++|...|+++.+.+
T Consensus 398 --~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 398 --LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 34445555555554 555666666666655444
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.90 E-value=8.9e-19 Score=177.14 Aligned_cols=365 Identities=11% Similarity=0.027 Sum_probs=292.2
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHcCCCCCcchHHHHHHHHHh----cCChhHHHHH
Q 043144 137 KATRVMEIVEDSGAVPDVITYNVLISGYCR----LGEIDNALQVLERMSVAPDVVTYNTILRTLCD----SGKLNLAMEV 208 (580)
Q Consensus 137 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~ 208 (580)
.+...+....+.| ++..+..++..|.. .+++++|+..|++.-...+...+..|...|.. .+++++|.+.
T Consensus 25 ~~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 101 (490)
T 2xm6_A 25 VNLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIW 101 (490)
T ss_dssp CCHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 3456666665544 77888888888888 78999999999987223567788888998988 8899999999
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHh----cCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHH
Q 043144 209 LHKQLEKECYPDVITYTILIEATCK----ESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICK----EGRLDEAIKFLN 280 (580)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 280 (580)
|++..+.+ +...+..+...|.. .+++++|...|+...+.| +...+..|...|.. .+++++|+++|+
T Consensus 102 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 175 (490)
T 2xm6_A 102 YKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYS 175 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 99988875 66777888888887 789999999999988865 67778888888887 788999999999
Q ss_pred HhhhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHh
Q 043144 281 DMPSYGCQPNVITHNIILRSMCS----TGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCR----KGLLGRAIDILEKM 352 (580)
Q Consensus 281 ~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~ 352 (580)
+..+.+ +...+..+...|.. .+++++|.++|+...+.+ +...+..+..+|.. .+++++|...|++.
T Consensus 176 ~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a 249 (490)
T 2xm6_A 176 KAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQS 249 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 888764 67778888888887 788999999999888865 56677778888876 78899999999888
Q ss_pred hhCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHH
Q 043144 353 PKHGCTPNSLSYNPVLHGFCK----EKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKD-----GKVDVAVEILNQLS 423 (580)
Q Consensus 353 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~ 423 (580)
.+.+ +...+..+...|.. .+++++|+.+|++..+.| +...+..+...|... +++++|...|++..
T Consensus 250 ~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~ 323 (490)
T 2xm6_A 250 AEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSA 323 (490)
T ss_dssp HTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHH
Confidence 7763 55667777777777 788999999999887653 556777778888877 88999999998888
Q ss_pred hCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhCC
Q 043144 424 NKHCSPVLITYNTVIDGLSKVG---KTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSR----EGKVDEAIKLFHDLERLG 496 (580)
Q Consensus 424 ~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 496 (580)
+.+ +...+..+...|...| ++++|.+.|++..+.+ +...+..+...|.. .+++++|...|++..+.+
T Consensus 324 ~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 324 EQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp HTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred hcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 764 3556777777777656 7888999998888764 67778888888887 788999999999988764
Q ss_pred CCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 043144 497 VRPNVITYNSIMLGLCK----ARQTYRAIDILADMVTRS 531 (580)
Q Consensus 497 ~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 531 (580)
+...+..|...|.. .+++++|...|++..+.+
T Consensus 398 ---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 398 ---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 56777888888887 788999999999988775
No 17
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.89 E-value=3e-19 Score=182.49 Aligned_cols=431 Identities=12% Similarity=0.027 Sum_probs=282.7
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc-CCCCC
Q 043144 107 LESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM-SVAPD 185 (580)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~ 185 (580)
|++.+.. .|.+...|..++. +.+.|++++|..+|+++.... |.+...|..++..+.+.|++++|..+|+++ ...|+
T Consensus 2 le~al~~-~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~ 78 (530)
T 2ooe_A 2 AEKKLEE-NPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLH 78 (530)
T ss_dssp HHHHHHH-CTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCC
T ss_pred hhhHhhh-CCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Confidence 5566555 4567788988888 478899999999999998865 677888999999999999999999999998 54567
Q ss_pred cchHHHHHHHH-HhcCChhHHHH----HHHHHHhC-CCC-CChhhHHHHHHHHHh---------cCCHhHHHHHHHHHHH
Q 043144 186 VVTYNTILRTL-CDSGKLNLAME----VLHKQLEK-ECY-PDVITYTILIEATCK---------ESGVGQAMKLLDEMRN 249 (580)
Q Consensus 186 ~~~~~~l~~~~-~~~g~~~~A~~----~~~~~~~~-~~~-~~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~ 249 (580)
...|...+... ...|+.+.|.+ +|++++.. |.. ++...|...+....+ .|++++|..+|++.++
T Consensus 79 ~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~ 158 (530)
T 2ooe_A 79 IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV 158 (530)
T ss_dssp HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence 77787777533 45677777765 66666543 333 345677777766554 6788888888888876
Q ss_pred cCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH------HHcC--
Q 043144 250 KGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEM------VLKG-- 321 (580)
Q Consensus 250 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~------~~~~-- 321 (580)
....+....|..........|. ..+..++. ...+++..|..++..+ .+..
T Consensus 159 ~P~~~~~~~~~~~~~~e~~~~~-~~~~~~l~---------------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~ 216 (530)
T 2ooe_A 159 NPMINIEQLWRDYNKYEEGINI-HLAKKMIE---------------------DRSRDYMNARRVAKEYETVMKGLDRNAP 216 (530)
T ss_dssp SCCTTHHHHHHHHHHHHHHHCH-HHHHHHHH---------------------TTHHHHHHHHHHHHHHHHHHHHCCSSSC
T ss_pred chhhhHHHHHHHHHHHHHhhch-hHHHHHHH---------------------HhhHHHHHHHHHHHHHHHHHHHhccccc
Confidence 3111112233332221111110 00111110 0123344555544442 1111
Q ss_pred -CCCC--------hhhHHHHHHHHHhc----CCH----HHHHHHHHHhhhCCCCCCHhhHHHHHHHHHh-------cCCH
Q 043144 322 -CSPS--------VVTFNILINFLCRK----GLL----GRAIDILEKMPKHGCTPNSLSYNPVLHGFCK-------EKKM 377 (580)
Q Consensus 322 -~~~~--------~~~~~~l~~~~~~~----g~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~ 377 (580)
++|+ ...|...+...... ++. +.+..+|++.+...+ .++..|..++..+.+ .|++
T Consensus 217 ~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~ 295 (530)
T 2ooe_A 217 SVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDM 295 (530)
T ss_dssp CCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred cCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccch
Confidence 1222 12344443332221 222 366677877777532 367777777777765 6777
Q ss_pred H-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhCCCHH
Q 043144 378 D-------RAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPV--LITYNTVIDGLSKVGKTE 448 (580)
Q Consensus 378 ~-------~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~ 448 (580)
+ +|..+|++.++.-.+.+...|..++..+.+.|++++|..+|+++.+.. |+ ...|...+..+.+.|+++
T Consensus 296 ~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~ 373 (530)
T 2ooe_A 296 NNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIK 373 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS--SSCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc--ccCchHHHHHHHHHHHHhcCHH
Confidence 6 788888888752122246688888888888888888888888888754 43 247888888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043144 449 QAMKLLEEMRTKGLKPDTITYSSLVGG-LSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADM 527 (580)
Q Consensus 449 ~A~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 527 (580)
+|..+|++..+.. +.+...|...+.. +...|++++|..+|+++.+..+. +...|..++..+.+.|+.++|..+|+++
T Consensus 374 ~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~-~~~~~~~~~~~~~~~g~~~~Ar~~~~~a 451 (530)
T 2ooe_A 374 SGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERV 451 (530)
T ss_dssp HHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhCCCHhhHHHHHHHH
Confidence 8888888888653 2223333322222 33588899999999988765433 6788888888888889999999999998
Q ss_pred HHcC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 043144 528 VTRS-CKP--TEATYTILIEGIAYEGLAKEALDLLNQLCSRGV 567 (580)
Q Consensus 528 ~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 567 (580)
+..+ ..| ....|...+......|+.+.+.++.+++.+.-+
T Consensus 452 l~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 452 LTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 8763 222 245788888888888999999988888877653
No 18
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.89 E-value=5.9e-19 Score=180.34 Aligned_cols=415 Identities=11% Similarity=0.001 Sum_probs=298.5
Q ss_pred CcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043144 83 EDFESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLIS 162 (580)
Q Consensus 83 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 162 (580)
+...|..++. +.+.|++++|..+|++++.. .|.+...|..++..+.+.|++++|..+|++++... |++..|..++.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 3357888888 57899999999999999987 67788899999999999999999999999999875 57888888876
Q ss_pred HH-HhcCChhHHHH----HHHHc----CCC-CCcchHHHHHHHHHh---------cCChhHHHHHHHHHHhCCCCCCh--
Q 043144 163 GY-CRLGEIDNALQ----VLERM----SVA-PDVVTYNTILRTLCD---------SGKLNLAMEVLHKQLEKECYPDV-- 221 (580)
Q Consensus 163 ~~-~~~g~~~~A~~----~~~~~----~~~-~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~-- 221 (580)
.. ...|++++|.+ +|++. +.. ++...|...+....+ .|+++.|..+|+++++. |..
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~~~ 164 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMINI 164 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCTTH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhhhH
Confidence 44 45688887766 66654 433 345678888887665 78999999999999983 322
Q ss_pred -hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHh------hhCC---CCCC-
Q 043144 222 -ITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDM------PSYG---CQPN- 290 (580)
Q Consensus 222 -~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------~~~~---~~~~- 290 (580)
..|..........|. .+...++. ...++++.|..++.+. .+.. ++|+
T Consensus 165 ~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~ 222 (530)
T 2ooe_A 165 EQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQN 222 (530)
T ss_dssp HHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC-
T ss_pred HHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCC
Confidence 233222221111110 01111111 1234455565555542 1111 2333
Q ss_pred -------HHHHHHHHHHHHhc----CCh----HHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-------cCCHH-----
Q 043144 291 -------VITHNIILRSMCST----GRW----MDAERLLAEMVLKGCSPSVVTFNILINFLCR-------KGLLG----- 343 (580)
Q Consensus 291 -------~~~~~~ll~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~----- 343 (580)
...|...+...... ++. ..+..+|++++... +.+...|..++..+.+ .|+++
T Consensus 223 ~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~ 301 (530)
T 2ooe_A 223 TPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLF 301 (530)
T ss_dssp -CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhh
Confidence 23455544333222 222 36778888888763 5577888888888875 68877
Q ss_pred --HHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHH
Q 043144 344 --RAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDI-VTYNTLLTALCKDGKVDVAVEILN 420 (580)
Q Consensus 344 --~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~ 420 (580)
+|..+|++..+.-.+.+...|..++..+.+.|++++|..+|+++++..+. +. ..|..++..+.+.|++++|..+|+
T Consensus 302 ~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~ 380 (530)
T 2ooe_A 302 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFK 380 (530)
T ss_dssp HHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 89999999987322346788999999999999999999999999986322 33 488889988999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC-C
Q 043144 421 QLSNKHCSPVLITYNTVIDG-LSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGV-R 498 (580)
Q Consensus 421 ~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~ 498 (580)
+..+.. +.+...|...+.. +...|++++|..+|++.++.. +.+...|..++..+.+.|+.++|..+|+++...++ .
T Consensus 381 ~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~ 458 (530)
T 2ooe_A 381 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 458 (530)
T ss_dssp HHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSC
T ss_pred HHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCC
Confidence 998764 2223333332222 336899999999999998763 34678899999999999999999999999987643 2
Q ss_pred C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043144 499 P--NVITYNSIMLGLCKARQTYRAIDILADMVTR 530 (580)
Q Consensus 499 ~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 530 (580)
| ....|...+......|+.+.+..+.+++.+.
T Consensus 459 ~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 459 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp GGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2 3558888888888899999999999998865
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.88 E-value=4.6e-20 Score=176.49 Aligned_cols=292 Identities=13% Similarity=-0.012 Sum_probs=189.5
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 043144 255 DVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILIN 334 (580)
Q Consensus 255 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 334 (580)
+...+..++..+...|++++|+.+|+++.+.. +.+...+..++.++...|++++|..+++++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 44455555556666666666666666655443 3333444455555666666666666666666543 334555666666
Q ss_pred HHHhcC-CHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 043144 335 FLCRKG-LLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVD 413 (580)
Q Consensus 335 ~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 413 (580)
.+...| ++++|...|+++.+.... +...|..+...+...|++++|+..++++.+.... +...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHH
Confidence 666666 666666666666655322 4556666666777777777777777766655322 3345555666777777777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhCCCHHHH
Q 043144 414 VAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKG--------LKPDTITYSSLVGGLSREGKVDEA 485 (580)
Q Consensus 414 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~--------~~p~~~~~~~l~~~~~~~g~~~~A 485 (580)
+|...++++.+.. +.+...+..+...+...|++++|...++++.+.. .+.+..++..+...+...|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 7777777776654 3446667777777777777777777777776531 123356777788888888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhcCCHH
Q 043144 486 IKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGI-AYEGLAK 553 (580)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 553 (580)
...++++.+..+. +...+..++.+|...|++++|.+.++++++.. +.+...+..+..++ ...|+.+
T Consensus 256 ~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 256 LDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 8888888765543 66777888888888888888888888887653 55677777777777 4555543
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.88 E-value=1.4e-19 Score=173.17 Aligned_cols=287 Identities=11% Similarity=0.012 Sum_probs=149.2
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 043144 223 TYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMC 302 (580)
Q Consensus 223 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 302 (580)
.+..++..+...|++++|.++|+++.+... .+...+..++..+...|++++|..+++++.+.. +.+...|..+...+.
T Consensus 24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 101 (330)
T 3hym_B 24 VVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYL 101 (330)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHH
Confidence 333444444444444444444444443321 123333334444444444444444444444322 223344444444444
Q ss_pred hcC-ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 043144 303 STG-RWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAI 381 (580)
Q Consensus 303 ~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 381 (580)
..| ++++|...|+.+.+.. +.+...+..+...+...|++++|...++++.+.... +...+..+...+...|++++|.
T Consensus 102 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~ 179 (330)
T 3hym_B 102 MVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKLAE 179 (330)
T ss_dssp HSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHHHH
Confidence 444 4444444444444432 223344444555555555555555555554443222 3334444555555555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 043144 382 EYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKH--------CSPVLITYNTVIDGLSKVGKTEQAMKL 453 (580)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~ 453 (580)
..++++.+..+. +...+..+...+...|++++|...++++.+.. .+.....+..+...+...|++++|...
T Consensus 180 ~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 258 (330)
T 3hym_B 180 RFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY 258 (330)
T ss_dssp HHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 555555544221 34455555555566666666666555554321 123345667777777777777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCC
Q 043144 454 LEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGL-CKARQ 516 (580)
Q Consensus 454 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~ 516 (580)
+++..+.. +.+...+..+...+...|++++|...++++.+..+. +...+..+..++ ...|+
T Consensus 259 ~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 259 HRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD-DTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC-CHHHHHHHHHHHHTTTTC
T ss_pred HHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC-chHHHHHHHHHHHHHhCc
Confidence 77776653 335566777777777777777777777777765433 566666666666 34444
No 21
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.85 E-value=4.5e-17 Score=172.11 Aligned_cols=417 Identities=13% Similarity=0.121 Sum_probs=305.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043144 87 SNNHLRRLVRNGELEEGFKFLESMVYHGD--IPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGY 164 (580)
Q Consensus 87 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (580)
....+..|...|.+.+|++++++++..+. ..+....+.++.+..+. +..+..+...+.... + ...++..+
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Ia 1059 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIA 1059 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHH
Confidence 34567888899999999999999985422 14556777777777777 556666666655422 1 33477888
Q ss_pred HhcCChhHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHH
Q 043144 165 CRLGEIDNALQVLERMSVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLL 244 (580)
Q Consensus 165 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 244 (580)
...|.+++|..+|++.+. .....+.+ +...+++++|.++.++. -+..+|..+..++...|++++|.+.|
T Consensus 1060 i~lglyEEAf~IYkKa~~--~~~A~~VL---ie~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsY 1128 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFDV--NTSAVQVL---IEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSY 1128 (1630)
T ss_pred HhCCCHHHHHHHHHHcCC--HHHHHHHH---HHHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 889999999999999741 22222223 22778899999988765 24678889999999999999999999
Q ss_pred HHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 043144 245 DEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSP 324 (580)
Q Consensus 245 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 324 (580)
.+. .|...|..++..+.+.|++++|.+.|....+.. ++....+.++.+|++.+++++...+ +. .+
T Consensus 1129 iKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f----I~---~~ 1193 (1630)
T 1xi4_A 1129 IKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF----IN---GP 1193 (1630)
T ss_pred Hhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH----Hh---CC
Confidence 664 378888889999999999999999998877653 3333334588889999888854433 22 34
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043144 325 SVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLT 404 (580)
Q Consensus 325 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 404 (580)
+...+..+...|...|++++|...|..+ ..|..+...+.+.|++++|++.+++. .+..+|..+..
T Consensus 1194 n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~ 1258 (1630)
T 1xi4_A 1194 NNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCF 1258 (1630)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHH
Confidence 5567778999999999999999999874 37899999999999999999999876 36688999999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--CCCH
Q 043144 405 ALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSR--EGKV 482 (580)
Q Consensus 405 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~--~g~~ 482 (580)
+|...|++..|......+ ..++..+..++..|...|.+++|+.+++..+... +-....|.-+...+++ -+++
T Consensus 1259 acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~pekl 1332 (1630)
T 1xi4_A 1259 ACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKM 1332 (1630)
T ss_pred HHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHH
Confidence 999999999998876543 2446667789999999999999999998887553 3344566556655554 4456
Q ss_pred HHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCCHHHHHHHH-------------HHHHHcCCCCCHHHHHHHHHH
Q 043144 483 DEAIKLFHDLERLGV----RPNVITYNSIMLGLCKARQTYRAIDIL-------------ADMVTRSCKPTEATYTILIEG 545 (580)
Q Consensus 483 ~~A~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~-------------~~~~~~~~~~~~~~~~~l~~~ 545 (580)
.++.++|..-..... --+...|..++..|.+.|+++.|.... ++.+. -..++..|...+..
T Consensus 1333 mEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n~elyykai~F 1410 (1630)
T 1xi4_A 1333 REHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANVELYYRAIQF 1410 (1630)
T ss_pred HHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--ccccHHHHHHHHHH
Confidence 666666664432110 125677999999999999999998432 22221 24567778777777
Q ss_pred HHhcC---------------CHHHHHHHHH
Q 043144 546 IAYEG---------------LAKEALDLLN 560 (580)
Q Consensus 546 ~~~~g---------------~~~~A~~~~~ 560 (580)
|...+ +.+.+.++++
T Consensus 1411 yl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1411 YLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred HHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 77666 6666666665
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.85 E-value=2.1e-19 Score=174.86 Aligned_cols=264 Identities=11% Similarity=0.014 Sum_probs=177.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHh
Q 043144 294 HNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCK 373 (580)
Q Consensus 294 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 373 (580)
+..+...+...|++++|...|+++++.. +.+...+..+..++...|++++|...|+++.+..+. +..++..+...+..
T Consensus 67 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~ 144 (368)
T 1fch_A 67 PFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTN 144 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHH
Confidence 4444444555555555555555554442 223444445555555555555555555555444222 44445555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHH---------------HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHH
Q 043144 374 EKKMDRAIEYLEIMVSRGCYPDIV---------------TYNTLLTALCKDGKVDVAVEILNQLSNKHCSP-VLITYNTV 437 (580)
Q Consensus 374 ~~~~~~A~~~~~~~~~~~~~~~~~---------------~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l 437 (580)
.|++++|+..++++....+..... .+..+...+ ..|++++|...++++.+..... +..++..+
T Consensus 145 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l 223 (368)
T 1fch_A 145 ESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGL 223 (368)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHH
Confidence 555555555555554432211000 111233333 7888999999999888765221 47888889
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 043144 438 IDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQT 517 (580)
Q Consensus 438 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 517 (580)
...|...|++++|...|+++.... +.+..++..+...+...|++++|...++++.+..+. +...+..++.+|...|++
T Consensus 224 ~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~ 301 (368)
T 1fch_A 224 GVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAH 301 (368)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCH
Confidence 999999999999999999988763 446788999999999999999999999999876543 678889999999999999
Q ss_pred HHHHHHHHHHHHcCCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043144 518 YRAIDILADMVTRSCKPT-----------EATYTILIEGIAYEGLAKEALDLLNQLC 563 (580)
Q Consensus 518 ~~A~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 563 (580)
++|...++++++.. +.+ ..+|..++.+|...|++++|..++++..
T Consensus 302 ~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 302 REAVEHFLEALNMQ-RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHHHHHHHHHHH-HTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred HHHHHHHHHHHHhC-CCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 99999999988652 222 6889999999999999999998877543
No 23
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.85 E-value=3.1e-18 Score=172.61 Aligned_cols=392 Identities=13% Similarity=-0.000 Sum_probs=223.5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHc-----------CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC----
Q 043144 152 PDVITYNVLISGYCRLGEIDNALQVLERM-----------SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKE---- 216 (580)
Q Consensus 152 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---- 216 (580)
.....|+.|+..+...|++++|++.|++. ..+....+|+.++.+|...|++++|...++++.+..
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34556788888888888888888887765 112234567778888888888888888777765421
Q ss_pred --CC-CChhhHHHHHHHHHh--cCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHH---HhcCCHHHHHHHHHHhhhCCCC
Q 043144 217 --CY-PDVITYTILIEATCK--ESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGI---CKEGRLDEAIKFLNDMPSYGCQ 288 (580)
Q Consensus 217 --~~-~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~ 288 (580)
.. ....++.....++.. .+++++|+..|++..+..+. ++..+..+..++ ...++.++|++.|++..+.+ +
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 00 123344444444443 34577777777777765322 444554444442 34466667777777766543 3
Q ss_pred CCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhH
Q 043144 289 PNVITHNIILRSMCS----TGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSY 364 (580)
Q Consensus 289 ~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 364 (580)
.+...+..+...+.. .+++++|.+.+++..... +.+..++..+...|...|++++|...+++..+..+. +..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHH
Confidence 344555554444433 345667777777766653 345566667777777777777777777777665332 44555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC
Q 043144 365 NPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKV 444 (580)
Q Consensus 365 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 444 (580)
..+...|...+.... ... ...........+..+.|...++...+.. +.+...+..+...|...
T Consensus 285 ~~lg~~y~~~~~~~~---------~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVM---------NLR-------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhh---------hHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHh
Confidence 555544432111100 000 0000001111234577888888887765 34466788899999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043144 445 GKTEQAMKLLEEMRTKGLKPDTI--TYSSLVG-GLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAI 521 (580)
Q Consensus 445 g~~~~A~~~~~~m~~~~~~p~~~--~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 521 (580)
|++++|...|++.++....+... .+..+.. .....|++++|+..|+++.+..+ +..... +....+.
T Consensus 348 ~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~--~~~~~~---------~~~~~l~ 416 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQ--KSREKE---------KMKDKLQ 416 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCC--CCHHHH---------HHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc--ccHHHH---------HHHHHHH
Confidence 99999999999998865433221 2223332 34578999999999999988654 322221 2234455
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHH
Q 043144 522 DILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGVVKKSSAEQV 576 (580)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 576 (580)
+++++.+... |.+..+|..++.+|...|++++|.+.++++++.|...++..+|+
T Consensus 417 ~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 417 KIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 6666666654 67788999999999999999999999999999988777766654
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.85 E-value=1.6e-19 Score=175.73 Aligned_cols=302 Identities=11% Similarity=-0.058 Sum_probs=161.8
Q ss_pred HHHcCChHHHHH-HHHHHHhCCCC-C--ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 043144 94 LVRNGELEEGFK-FLESMVYHGDI-P--DIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGE 169 (580)
Q Consensus 94 ~~~~g~~~~A~~-~~~~~~~~~~~-~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 169 (580)
+.-.|++++|+. .|++++..... | +...+..++..+.+.|++++|...|+++.+.. +.+..++..++.+|...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 444577888887 77766554211 1 34567778888888888888888888888776 5677788888888888888
Q ss_pred hhHHHHHHHHc--CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHH
Q 043144 170 IDNALQVLERM--SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEM 247 (580)
Q Consensus 170 ~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 247 (580)
+++|+..|+++ ..+.+..++..++..+...|++++|...+++++..... +...+..+... . ..
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~-------~~ 178 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------A-------GG 178 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC----------------------
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------h-------hh
Confidence 88888888877 22446677888888888888888888888888776422 22222111000 0 00
Q ss_pred HHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 043144 248 RNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQP--NVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPS 325 (580)
Q Consensus 248 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 325 (580)
. . ....+..+...+ ..|++++|+..|+++.+.. +. +..++..+...+...|++++|...++++.+.. +.+
T Consensus 179 ~----~-~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~ 250 (368)
T 1fch_A 179 A----G-LGPSKRILGSLL-SDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PND 250 (368)
T ss_dssp ------------CTTHHHH-HHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred h----c-ccHHHHHHHHHh-hcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCC
Confidence 0 0 000011111122 4455555555555544432 11 34445555555555555555555555554432 223
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----------C
Q 043144 326 VVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYP----------D 395 (580)
Q Consensus 326 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----------~ 395 (580)
...+..+...+...|++++|...|+++.+..+ .+...+..+...|.+.|++++|...|+++.+..+.. .
T Consensus 251 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 329 (368)
T 1fch_A 251 YLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMS 329 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchh
Confidence 44555555555555555555555555554422 234455555555555555555555555554421110 1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHH
Q 043144 396 IVTYNTLLTALCKDGKVDVAVEILN 420 (580)
Q Consensus 396 ~~~~~~li~~~~~~g~~~~A~~~~~ 420 (580)
..+|..+..++...|+.++|..++.
T Consensus 330 ~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 330 ENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred hHHHHHHHHHHHHhCChHhHHHhHH
Confidence 3456666666666666666655554
No 25
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.84 E-value=4.1e-16 Score=164.92 Aligned_cols=380 Identities=13% Similarity=0.123 Sum_probs=296.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHcCCCCCcchHHHHHHHHHh
Q 043144 121 PCTSLIRGFCKVGKTRKATRVMEIVEDSG--AVPDVITYNVLISGYCRLGEIDNALQVLERMSVAPDVVTYNTILRTLCD 198 (580)
Q Consensus 121 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~ 198 (580)
-....+.+|...|.+.+|+++++++.-.+ +..+....+.++.+..+. +..+..+...+.+ . .....++..+..
T Consensus 987 eVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd-~---~d~~eIA~Iai~ 1061 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLD-N---YDAPDIANIAIS 1061 (1630)
T ss_pred HhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhh-h---ccHHHHHHHHHh
Confidence 34566788899999999999999998432 113456667777776666 6677777777663 1 225568899999
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 043144 199 SGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKF 278 (580)
Q Consensus 199 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 278 (580)
.|.+++|..+|++... .....+.++ -..+++++|.++.++.. +..+|..+..++.+.|++++|++.
T Consensus 1062 lglyEEAf~IYkKa~~-----~~~A~~VLi---e~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIds 1127 (1630)
T 1xi4_A 1062 NELFEEAFAIFRKFDV-----NTSAVQVLI---EHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDS 1127 (1630)
T ss_pred CCCHHHHHHHHHHcCC-----HHHHHHHHH---HHHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHH
Confidence 9999999999998621 222223332 27789999999988652 588999999999999999999999
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC
Q 043144 279 LNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCT 358 (580)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 358 (580)
|.+. .|...|..++.++.+.|++++|.+++....+.. +++...+.++.+|++.+++++..... + .
T Consensus 1128 YiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~ 1192 (1630)
T 1xi4_A 1128 YIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---G 1192 (1630)
T ss_pred HHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---C
Confidence 9774 377788999999999999999999999888764 34444456999999999988644442 2 3
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 043144 359 PNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVI 438 (580)
Q Consensus 359 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 438 (580)
++...|..+...|...|++++|..+|... ..|..+..++.+.|+++.|.+.+++. .+..+|..+.
T Consensus 1193 ~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~ 1257 (1630)
T 1xi4_A 1193 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC 1257 (1630)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHH
Confidence 46677788999999999999999999985 37899999999999999999999887 3468899999
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--C
Q 043144 439 DGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKAR--Q 516 (580)
Q Consensus 439 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~ 516 (580)
.+|...|++..|..+...+ ..++..+..++..|.+.|.+++|+.+++.....+ +-+...|.-|..+|.+.+ +
T Consensus 1258 ~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~pek 1331 (1630)
T 1xi4_A 1258 FACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQK 1331 (1630)
T ss_pred HHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHH
Confidence 9999999999998887643 3466778899999999999999999999988765 336778877877777643 4
Q ss_pred HHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHhcCCHHHHHH
Q 043144 517 TYRAIDILADMVTRSCKP------TEATYTILIEGIAYEGLAKEALD 557 (580)
Q Consensus 517 ~~~A~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~ 557 (580)
..++.+.|..-. ++++ +...|..++-.|.+.|+++.|..
T Consensus 1332 lmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1332 MREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 555555554333 2333 46789999999999999999984
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.83 E-value=2.4e-19 Score=174.19 Aligned_cols=266 Identities=8% Similarity=-0.012 Sum_probs=204.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHH
Q 043144 290 NVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLH 369 (580)
Q Consensus 290 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 369 (580)
+...+..+...+...|++++|...|+.+++.. +.+..++..+..+|...|++++|+..|+++.+..+. +..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 34456777777778888888888888877764 446677778888888888888888888887776432 5677788888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH-----------HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCHHHHHHH
Q 043144 370 GFCKEKKMDRAIEYLEIMVSRGCYPDI-----------VTYNTLLTALCKDGKVDVAVEILNQLSNKHCS-PVLITYNTV 437 (580)
Q Consensus 370 ~~~~~~~~~~A~~~~~~~~~~~~~~~~-----------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l 437 (580)
.|...|++++|+..++++.+.. |+. ..+..+...+...|++++|...++++.+.... ++..++..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 8888888888888888877642 221 23344577888999999999999999877622 157889999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 043144 438 IDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQT 517 (580)
Q Consensus 438 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 517 (580)
...|...|++++|...|+++.+.. +.+..+|..+..+|...|++++|...|+++.+..+. +..++..++.+|...|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCH
Confidence 999999999999999999998764 446889999999999999999999999999876544 688899999999999999
Q ss_pred HHHHHHHHHHHHcCC---C--------CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043144 518 YRAIDILADMVTRSC---K--------PTEATYTILIEGIAYEGLAKEALDLLNQ 561 (580)
Q Consensus 518 ~~A~~~~~~~~~~~~---~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 561 (580)
++|...++++++..- . .+..+|..+..++...|+.+.+.++.++
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999886420 0 1357899999999999999998887665
No 27
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.83 E-value=6.3e-18 Score=170.39 Aligned_cols=382 Identities=11% Similarity=-0.043 Sum_probs=252.4
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc-------C
Q 043144 117 PDIIPCTSLIRGFCKVGKTRKATRVMEIVEDS--------GAVPDVITYNVLISGYCRLGEIDNALQVLERM-------S 181 (580)
Q Consensus 117 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~ 181 (580)
.....|+.+...+...|++++|++.|++..+. ..+....+|+.++.+|...|++++|...++++ .
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34567899999999999999999999987542 12345678999999999999999999998876 1
Q ss_pred C--CC-CcchHHHHHHHHHhc--CChhHHHHHHHHHHhCCCCCChhhHHHHHHH---HHhcCCHhHHHHHHHHHHHcCCC
Q 043144 182 V--AP-DVVTYNTILRTLCDS--GKLNLAMEVLHKQLEKECYPDVITYTILIEA---TCKESGVGQAMKLLDEMRNKGCI 253 (580)
Q Consensus 182 ~--~~-~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~~~~~~~~ 253 (580)
. .+ ...++..++.++... +++++|++.|+++++.. |.+...+..+... +...++.++|++.+++..+..+
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p- 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP- 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-
Confidence 1 11 234566666666654 57999999999999875 2245555555554 3456888999999999988743
Q ss_pred CCHhHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhH
Q 043144 254 PDVVTYNVLVNGICK----EGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTF 329 (580)
Q Consensus 254 ~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 329 (580)
.+..++..+...+.. .|++++|..++++..... +.+...+..+...+...|++++|...++++.+.. +.+..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHH
Confidence 256666666655544 567889999999987764 5677889999999999999999999999999874 4456677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 043144 330 NILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKD 409 (580)
Q Consensus 330 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 409 (580)
..+..+|...+....+. .. ..........+.++.|...+++..+..+. +..++..+...+...
T Consensus 285 ~~lg~~y~~~~~~~~~~------~~----------~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNL------RE----------NGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhH------HH----------HHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHh
Confidence 77776664321111100 00 00011111123457788888887765322 344677888889999
Q ss_pred CChHHHHHHHHHHHhCCCCCCH--HHHHHHHH-HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 043144 410 GKVDVAVEILNQLSNKHCSPVL--ITYNTVID-GLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAI 486 (580)
Q Consensus 410 g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 486 (580)
|++++|...|++..+....+.. ..+..+.. .+...|++++|+..|++.++. .|+...... ....+.
T Consensus 348 ~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~~~l~ 416 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------MKDKLQ 416 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------HHHHHH
T ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------HHHHHH
Confidence 9999999999988876533322 12222322 234778999999999998875 444332221 234455
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043144 487 KLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRS 531 (580)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 531 (580)
++++...+.++. +..+|..++.+|...|++++|++.|+++++.+
T Consensus 417 ~~~~~~l~~~p~-~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 417 KIAKMRLSKNGA-DSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHHCC--CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 666666655543 67789999999999999999999999998764
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.83 E-value=1.1e-18 Score=169.63 Aligned_cols=263 Identities=13% Similarity=0.010 Sum_probs=184.9
Q ss_pred ccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043144 85 FESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGY 164 (580)
Q Consensus 85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (580)
..+..+...+.+.|++++|+.+|++++.. .|.+..++..++.++...|++++|...|+++.+.. +.+..++..++.+|
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQ-DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSY 143 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 45788888888999999999999988876 45677888888888999999999999998888876 56788888888888
Q ss_pred HhcCChhHHHHHHHHc-CCCCC-cc----------hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-ChhhHHHHHHHH
Q 043144 165 CRLGEIDNALQVLERM-SVAPD-VV----------TYNTILRTLCDSGKLNLAMEVLHKQLEKECYP-DVITYTILIEAT 231 (580)
Q Consensus 165 ~~~g~~~~A~~~~~~~-~~~~~-~~----------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~ 231 (580)
...|++++|+..|+++ ...|+ .. .+..++..+...|++++|+..|+++++..... +..++..+...+
T Consensus 144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 8899999999888887 22222 22 23344777777888888888888877764221 466777777777
Q ss_pred HhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 043144 232 CKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAE 311 (580)
Q Consensus 232 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 311 (580)
...|++++|...|+++.+.. +.+..+|..+..+|...|++++|+..|+++.+.. +.+..++..+..++...|++++|.
T Consensus 224 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHH
Confidence 77888888888887777663 2356677777777777788888887777776653 345667777777777777777777
Q ss_pred HHHHHHHHcCCC-----------CChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 043144 312 RLLAEMVLKGCS-----------PSVVTFNILINFLCRKGLLGRAIDILEK 351 (580)
Q Consensus 312 ~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 351 (580)
..|+++++.... .+...|..+..++...|+.+.+..+..+
T Consensus 302 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 777777654210 0234566666666666666666665544
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.82 E-value=4.5e-18 Score=162.37 Aligned_cols=263 Identities=13% Similarity=-0.019 Sum_probs=173.6
Q ss_pred ccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043144 85 FESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGY 164 (580)
Q Consensus 85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (580)
..+..+...+...|++++|+.+|++++.. .+.+...+..++..+...|++++|...|+++.+.. +.+..++..++..|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQA-APEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 46778889999999999999999999886 45677888999999999999999999999998876 66788899999999
Q ss_pred HhcCChhHHHHHHHHc--CCCCCcchHHHH--------------HH-HHHhcCChhHHHHHHHHHHhCCCCCChhhHHHH
Q 043144 165 CRLGEIDNALQVLERM--SVAPDVVTYNTI--------------LR-TLCDSGKLNLAMEVLHKQLEKECYPDVITYTIL 227 (580)
Q Consensus 165 ~~~g~~~~A~~~~~~~--~~~~~~~~~~~l--------------~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 227 (580)
...|++++|++.++++ ..+.+...+..+ .. .+...|++++|...++++++.. +.+...+..+
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 178 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASL 178 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 9999999999999987 223334444443 22 2555566666666666666543 2245556666
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCh
Q 043144 228 IEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRW 307 (580)
Q Consensus 228 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 307 (580)
+..+...|++++|...++++.+.. +.+..++..++..+...|++++|...|+++.+.. +.+...+..+...+...|++
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccH
Confidence 666666666666666666665543 2245556666666666666666666666655432 33455555556666666666
Q ss_pred HHHHHHHHHHHHcCCCC-----------ChhhHHHHHHHHHhcCCHHHHHHHHHHh
Q 043144 308 MDAERLLAEMVLKGCSP-----------SVVTFNILINFLCRKGLLGRAIDILEKM 352 (580)
Q Consensus 308 ~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 352 (580)
++|.+.++++.+..... +...+..+..++...|+.++|..++++.
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 66666666555442110 2345555555555556665555555443
No 30
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.82 E-value=1.1e-18 Score=165.66 Aligned_cols=282 Identities=15% Similarity=0.148 Sum_probs=108.9
Q ss_pred HcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 043144 96 RNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQ 175 (580)
Q Consensus 96 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 175 (580)
+.|+.++|.++++++ ++..+|..++.++.+.|++++|++.|.+ .+|..+|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 557788888888876 2334788888888888888888888854 2466677778888888888888888
Q ss_pred HHHHc-CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC
Q 043144 176 VLERM-SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIP 254 (580)
Q Consensus 176 ~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 254 (580)
.++.. ...+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|.+++|...|..+
T Consensus 83 yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------- 148 (449)
T 1b89_A 83 YLQMARKKARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------- 148 (449)
T ss_dssp --------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-------
T ss_pred HHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-------
Confidence 66655 334556677778888888888888777663 256667888888888888888888888755
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 043144 255 DVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILIN 334 (580)
Q Consensus 255 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 334 (580)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. .++.....++.
T Consensus 149 --~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~lv~ 215 (449)
T 1b89_A 149 --SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELIN 215 (449)
T ss_dssp --TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHHHH
T ss_pred --hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHHHH
Confidence 36777888888888888888888776 267778888888888888888855444322 23333445777
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC------CHHHHHHHHHHHH
Q 043144 335 FLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSR-GCYP------DIVTYNTLLTALC 407 (580)
Q Consensus 335 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~------~~~~~~~li~~~~ 407 (580)
.|.+.|.+++|..+++..+... +-....|+-+...|++- ++++..+.++....+ .+.| +...|..+...|.
T Consensus 216 ~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~ 293 (449)
T 1b89_A 216 YYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYD 293 (449)
T ss_dssp HHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888888887776653 22455566666666553 233333333322211 1111 2235666666677
Q ss_pred hcCChHHHHHH
Q 043144 408 KDGKVDVAVEI 418 (580)
Q Consensus 408 ~~g~~~~A~~~ 418 (580)
+.++++.|...
T Consensus 294 ~~~e~d~A~~t 304 (449)
T 1b89_A 294 KYEEYDNAIIT 304 (449)
T ss_dssp HTTCHHHHHHH
T ss_pred hhchHHHHHHH
Confidence 77777766653
No 31
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.81 E-value=3.1e-18 Score=162.66 Aligned_cols=266 Identities=8% Similarity=0.054 Sum_probs=119.6
Q ss_pred CcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043144 83 EDFESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLIS 162 (580)
Q Consensus 83 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 162 (580)
.+..|..++.++.+.|++++|++.|.+. +|...|..++..+...|++++|+..++..++. .+++.+.+.++.
T Consensus 31 ~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~ 102 (449)
T 1b89_A 31 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIF 102 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHH
Confidence 3457888888888888888888888653 46667788888888888888888877776664 445677778888
Q ss_pred HHHhcCChhHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHH
Q 043144 163 GYCRLGEIDNALQVLERMSVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMK 242 (580)
Q Consensus 163 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 242 (580)
+|.+.|+++++.++++ .|+..+|..++..|...|.+++|...|..+ ..|..++.++.+.|++++|.+
T Consensus 103 ~Y~Klg~l~e~e~f~~----~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVe 169 (449)
T 1b89_A 103 ALAKTNRLAELEEFIN----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVD 169 (449)
T ss_dssp ------CHHHHTTTTT----CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHhCCHHHHHHHHc----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHH
Confidence 8888888888777775 366668888888888888888888888765 357888888888888888888
Q ss_pred HHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 043144 243 LLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGC 322 (580)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 322 (580)
.+..+ .++.+|..++.+|...|+++.|......+. ..+.....++..|.+.|++++|..+++..+...
T Consensus 170 a~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le- 237 (449)
T 1b89_A 170 GARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE- 237 (449)
T ss_dssp HHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-
T ss_pred HHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-
Confidence 88877 167888888888888888888866555433 233334467778888888888888888887654
Q ss_pred CCChhhHHHHHHHHHhc--CCHHHHHHHHHHhhhCCCCC------CHhhHHHHHHHHHhcCCHHHHHHH
Q 043144 323 SPSVVTFNILINFLCRK--GLLGRAIDILEKMPKHGCTP------NSLSYNPVLHGFCKEKKMDRAIEY 383 (580)
Q Consensus 323 ~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~ 383 (580)
+.....|+.|.-+|++- +++.+.++.|..- .+++| +...|..+.-.|...++++.|...
T Consensus 238 ~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 238 RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 44566777777777654 2333444444322 22232 456677788888888888877763
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.81 E-value=7.5e-18 Score=160.81 Aligned_cols=149 Identities=9% Similarity=-0.014 Sum_probs=72.2
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 043144 409 DGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKL 488 (580)
Q Consensus 409 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 488 (580)
.|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...
T Consensus 151 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 228 (327)
T 3cv0_A 151 PNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDA 228 (327)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 334444444444433322 1233444444444444444444444444444332 22344455555555555555555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC------------CHHHHHHHHHHHHhcCCHHHHH
Q 043144 489 FHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKP------------TEATYTILIEGIAYEGLAKEAL 556 (580)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~ 556 (580)
++++.+..+. +...+..++.+|...|++++|.+.++++.+.. +. +..+|..++.++...|++++|.
T Consensus 229 ~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 306 (327)
T 3cv0_A 229 YNRALDINPG-YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ-VGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVE 306 (327)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccccccccchhhcCHHHHHHHHHHHHhcCCHHHHH
Confidence 5555443322 44455555555555555555555555555432 11 2445555555666666666665
Q ss_pred HHHHH
Q 043144 557 DLLNQ 561 (580)
Q Consensus 557 ~~~~~ 561 (580)
.++++
T Consensus 307 ~~~~~ 311 (327)
T 3cv0_A 307 LTYAQ 311 (327)
T ss_dssp HHTTC
T ss_pred HHHHH
Confidence 55543
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.79 E-value=7.8e-17 Score=150.11 Aligned_cols=273 Identities=11% Similarity=0.075 Sum_probs=180.3
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 043144 264 NGICKEGRLDEAIKFLNDMPSYGCQPNV--ITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGL 341 (580)
Q Consensus 264 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 341 (580)
+-....|++..|+..+++.... .|+. .....+.++|...|+++.|...++. ..+|+..++..+...+...++
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCc
Confidence 3455678888888877776543 2332 3445567778888888887765543 124566677777777777888
Q ss_pred HHHHHHHHHHhhhCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 043144 342 LGRAIDILEKMPKHGCTP-NSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILN 420 (580)
Q Consensus 342 ~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 420 (580)
.++|++.++++...+..| +...+..+...+...|++++|+..+++ ..+...+..++..+.+.|++++|...|+
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 888888888777665333 455566666777788888888887776 2456677777777888888888888888
Q ss_pred HHHhCCCCCCHHHH---HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 043144 421 QLSNKHCSPVLITY---NTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGV 497 (580)
Q Consensus 421 ~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 497 (580)
.+.+.. |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...|+++.+..+
T Consensus 155 ~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p 231 (291)
T 3mkr_A 155 KMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS 231 (291)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 877654 332211 122333445577888888888877763 45677777777788888888888888888776554
Q ss_pred CCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 043144 498 RPNVITYNSIMLGLCKARQTYR-AIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALD 557 (580)
Q Consensus 498 ~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 557 (580)
. +..++..++.++...|+.++ +.++++++.+.. |.++.+ .+...+.+.++++..
T Consensus 232 ~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~-P~~~~~----~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 232 G-HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH-RSHPFI----KEYRAKENDFDRLVL 286 (291)
T ss_dssp T-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHH----HHHHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-CCChHH----HHHHHHHHHHHHHHH
Confidence 4 67777777777777777765 456777777652 333332 223444455555443
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.78 E-value=1.4e-16 Score=148.36 Aligned_cols=255 Identities=15% Similarity=0.097 Sum_probs=166.5
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChH
Q 043144 229 EATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWM 308 (580)
Q Consensus 229 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 308 (580)
+-....|++..|+..++................+.++|...|++++|+..++.. -+|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHH
Confidence 344556777777777766544321111234455667777777777777665442 2556666777777777777777
Q ss_pred HHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043144 309 DAERLLAEMVLKGC-SPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIM 387 (580)
Q Consensus 309 ~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 387 (580)
+|.+.++++...+. +.+...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|...++++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 77777777776553 33455566666777777777777777766 236667777777777777777777777777
Q ss_pred HHCCCCCCHHH---HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC
Q 043144 388 VSRGCYPDIVT---YNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKP 464 (580)
Q Consensus 388 ~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 464 (580)
.+.. |+... ...++..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...|++.++.. +-
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~ 232 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SG 232 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 7653 33221 1223333444577777777777777653 4566777777777777777777777777777653 33
Q ss_pred CHHHHHHHHHHHHhCCCHHH-HHHHHHHHHhCCC
Q 043144 465 DTITYSSLVGGLSREGKVDE-AIKLFHDLERLGV 497 (580)
Q Consensus 465 ~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~ 497 (580)
+..++..++..+...|+.++ +.++++++.+..+
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 56677777777777777754 4677777766543
No 35
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.77 E-value=1e-16 Score=159.44 Aligned_cols=372 Identities=10% Similarity=-0.001 Sum_probs=175.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh---hHHHHHHHHcCCCCCcchHHHHHHHHHhcC--
Q 043144 126 IRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEI---DNALQVLERMSVAPDVVTYNTILRTLCDSG-- 200 (580)
Q Consensus 126 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g-- 200 (580)
...+.+.|++++|.++|++..+.| ++..+..|+..|...|++ ++|+..|++.-.. ++..+..++..+...+
T Consensus 10 a~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 10 ANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-SPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC-----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-CHHHHHHHHHHHHhCCCC
Confidence 334444455555555555444433 222233344444444444 4555555554211 4444444444333333
Q ss_pred ---ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHh---HHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHH
Q 043144 201 ---KLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVG---QAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDE 274 (580)
Q Consensus 201 ---~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 274 (580)
++++|+..|++..+.+ +...+..|...|...+..+ ++.+.+......| +...+..|...|...+.+++
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGG
T ss_pred CCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCccc
Confidence 4455555555555543 2224444555544433322 2333333333332 34455555555555553333
Q ss_pred HHH----HHHHhhhCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc----CCHH
Q 043144 275 AIK----FLNDMPSYGCQPNVITHNIILRSMCSTG---RWMDAERLLAEMVLKGCSPSVVTFNILINFLCRK----GLLG 343 (580)
Q Consensus 275 A~~----~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~ 343 (580)
+.. ++..... .++..+..+...|...| +.++|.++|+...+.| +++...+..|..+|... ++++
T Consensus 160 ~~~~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~ 234 (452)
T 3e4b_A 160 HLDDVERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEK 234 (452)
T ss_dssp GHHHHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHH
T ss_pred CHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHH
Confidence 332 2332222 12225555555666666 6666666666666665 33444334555555443 5666
Q ss_pred HHHHHHHHhhhCCCCCCHhhHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----ChHHH
Q 043144 344 RAIDILEKMPKHGCTPNSLSYNPVLHG-F--CKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDG-----KVDVA 415 (580)
Q Consensus 344 ~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A 415 (580)
+|...|++.. . -++..+..+... + ...+++++|+.+|++..+.| +...+..|...|. .| ++++|
T Consensus 235 ~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A 306 (452)
T 3e4b_A 235 TAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAA 306 (452)
T ss_dssp HHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred HHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence 7777776665 2 144455555554 3 34667777777777766654 4555556665555 34 67777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----CCCHHHHHH
Q 043144 416 VEILNQLSNKHCSPVLITYNTVIDGLSK----VGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSR----EGKVDEAIK 487 (580)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~ 487 (580)
...|++.. +.+...+..+...|.. ..++++|...|++..+.| +......|...|.. ..+.++|..
T Consensus 307 ~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~ 379 (452)
T 3e4b_A 307 EAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYV 379 (452)
T ss_dssp HHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHH
T ss_pred HHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence 77776666 2344555555555554 336777777777776655 23334445555543 346777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043144 488 LFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMV 528 (580)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 528 (580)
.|+...+.|.. +.......+......++..+|..+.++..
T Consensus 380 ~~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 380 FSQLAKAQDTP-EANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp HHHHHHTTCCH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 77777765532 22222222222222334555555555544
No 36
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.76 E-value=2e-16 Score=157.35 Aligned_cols=379 Identities=10% Similarity=-0.005 Sum_probs=259.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh---HHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043144 88 NNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKT---RKATRVMEIVEDSGAVPDVITYNVLISGY 164 (580)
Q Consensus 88 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (580)
..+...+.+.|++++|+++|+++...| +...+..+...|...|+. ++|..+|++..+. ++..+..|+..+
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~ 79 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLL 79 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHH
Confidence 456788899999999999999998875 444566677777888888 9999999998854 666777788866
Q ss_pred HhcC-----ChhHHHHHHHHcCCCCCcchHHHHHHHHHhcCChh---HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 043144 165 CRLG-----EIDNALQVLERMSVAPDVVTYNTILRTLCDSGKLN---LAMEVLHKQLEKECYPDVITYTILIEATCKESG 236 (580)
Q Consensus 165 ~~~g-----~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 236 (580)
...+ ++++|+..|++.-.+.+...+..|+..|...+..+ ++.+.+......+ +...+..+...|...+.
T Consensus 80 ~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~ 156 (452)
T 3e4b_A 80 AAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGT 156 (452)
T ss_dssp HTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTC
T ss_pred HhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 5655 78899999999822334558888999998876544 4555555555544 56678888888988887
Q ss_pred HhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcC---CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhc----CChHH
Q 043144 237 VGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEG---RLDEAIKFLNDMPSYGCQPNVITHNIILRSMCST----GRWMD 309 (580)
Q Consensus 237 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----~~~~~ 309 (580)
++++......+.+.-...++..+..|...|...| +.++|+..|++..+.| +++...+..+...|... +++++
T Consensus 157 ~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~ 235 (452)
T 3e4b_A 157 YDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKT 235 (452)
T ss_dssp GGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHH
T ss_pred cccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHH
Confidence 6666555444333222335558889999999999 9999999999999887 56666666777777655 79999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHH-H--HhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcC-----CHHHHH
Q 043144 310 AERLLAEMVLKGCSPSVVTFNILINF-L--CRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEK-----KMDRAI 381 (580)
Q Consensus 310 a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~A~ 381 (580)
|..+|+... . .+...+..|..+ + ...+++++|...|++..+.| ++..+..+...|. .| ++++|+
T Consensus 236 A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~ 307 (452)
T 3e4b_A 236 AQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAE 307 (452)
T ss_dssp HHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHH
T ss_pred HHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHH
Confidence 999999988 4 366677778777 4 46899999999999998875 6777888887777 55 999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCCHHHHHHH
Q 043144 382 EYLEIMVSRGCYPDIVTYNTLLTALCK----DGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSK----VGKTEQAMKL 453 (580)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~ 453 (580)
.+|++.. . -+......|...|.. ..++++|...|+...+.+. ......+...|.. ..++++|...
T Consensus 308 ~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~ 380 (452)
T 3e4b_A 308 AHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVF 380 (452)
T ss_dssp HHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHH
T ss_pred HHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence 9999887 3 366777788877776 3489999999999988763 3445566666653 4689999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 043144 454 LEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLE 493 (580)
Q Consensus 454 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 493 (580)
|+...+.| .++.......+......++.++|..+.++..
T Consensus 381 ~~~A~~~g-~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 381 SQLAKAQD-TPEANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp HHHHHTTC-CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCC-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 99998877 2333322222222233345666777766654
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.3e-15 Score=139.65 Aligned_cols=225 Identities=15% Similarity=0.079 Sum_probs=130.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CC----HHHHHH
Q 043144 328 TFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCY--PD----IVTYNT 401 (580)
Q Consensus 328 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~----~~~~~~ 401 (580)
.+..+...+...|++++|...|+++.+.. .+...+..+...+...|++++|+..++++.+.... ++ ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34445555555555555555555555544 34455555555555555555555555555442111 11 345555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 043144 402 LLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGK 481 (580)
Q Consensus 402 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 481 (580)
+...+...|++++|...|+++.... |+. ..+...|++++|...++++.... +.+...+..+...+...|+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcC
Confidence 5556666666666666666655533 322 23444555666666666666542 2234456666666666777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043144 482 VDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQ 561 (580)
Q Consensus 482 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 561 (580)
+++|...++++.+..+. +...|..++.+|...|++++|...++++++.. +.+...|..++.++...|++++|.+.+++
T Consensus 155 ~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 77777777766654433 56666666667777777777777777766653 44566666677777777777777777776
Q ss_pred HHhCC
Q 043144 562 LCSRG 566 (580)
Q Consensus 562 ~~~~g 566 (580)
+.+..
T Consensus 233 a~~~~ 237 (258)
T 3uq3_A 233 ARTKD 237 (258)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 66554
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.71 E-value=2.7e-15 Score=137.63 Aligned_cols=224 Identities=14% Similarity=0.080 Sum_probs=135.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC--CC----HhhHHH
Q 043144 293 THNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCT--PN----SLSYNP 366 (580)
Q Consensus 293 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~----~~~~~~ 366 (580)
.+..+...+...|++++|...|+++.+.. .+...+..+..++...|++++|...++++.+.... ++ ...+..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34444444555555555555555554443 34445555555555555555555555554443111 01 345555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 043144 367 VLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGK 446 (580)
Q Consensus 367 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 446 (580)
+...+...|++++|+..|+++.+. .|+. ..+...|++++|...++.+.... +.+...+..+...+...|+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcC
Confidence 556666666666666666666553 2332 23445566667777776666543 2234556667777777777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043144 447 TEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILAD 526 (580)
Q Consensus 447 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 526 (580)
+++|...++++.+.. +.+..++..+...+...|++++|...++++.+..+. +...|..++.+|...|++++|...+++
T Consensus 155 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 777777777777653 335667777777777888888888888877765433 567777777788888888888888877
Q ss_pred HHHc
Q 043144 527 MVTR 530 (580)
Q Consensus 527 ~~~~ 530 (580)
+.+.
T Consensus 233 a~~~ 236 (258)
T 3uq3_A 233 ARTK 236 (258)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7654
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.71 E-value=1.6e-15 Score=134.86 Aligned_cols=198 Identities=14% Similarity=0.016 Sum_probs=122.6
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043144 360 NSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVID 439 (580)
Q Consensus 360 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 439 (580)
+...+..+...+.+.|++++|+..|++.++..+. +...+..+..++.+.|++++|...+++..+.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 4444555555555555555555555555544222 34455555555555555555555555555443 233445555555
Q ss_pred HHHhC-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 043144 440 GLSKV-----------GKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIM 508 (580)
Q Consensus 440 ~~~~~-----------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 508 (580)
++... |++++|...|++.++.. +-+...+..+..++...|++++|+..|+++.+.. .+...+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 55555 88888888888887753 3356777788888888888888888888887766 4777888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043144 509 LGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLC 563 (580)
Q Consensus 509 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 563 (580)
.+|...|++++|+..++++++.. |.+...+..++.++...|++++|.+.+++..
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 88888888888888888888763 6667788888888888888888888877653
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.70 E-value=1e-15 Score=136.13 Aligned_cols=193 Identities=16% Similarity=0.065 Sum_probs=122.8
Q ss_pred ccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043144 85 FESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGY 164 (580)
Q Consensus 85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (580)
..+..+...+.+.|++++|+..|++++.. .|.+...+..+..++.+.|++++|...|++..+.. |.+...+..++.++
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~ 83 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKE-NPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAY 83 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTT-SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 35666777777778888888888877766 45566777777777778888888888887777765 55667777777777
Q ss_pred Hhc-----------CChhHHHHHHHHc-C-CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 043144 165 CRL-----------GEIDNALQVLERM-S-VAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEAT 231 (580)
Q Consensus 165 ~~~-----------g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 231 (580)
... |++++|+..|++. . .|.+...|..++.++...|++++|+..|+++++.. .+...+..+...+
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~ 161 (217)
T 2pl2_A 84 VALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELY 161 (217)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred HHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHH
Confidence 777 7777777777665 2 23345566666667777777777777777766655 4566666666666
Q ss_pred HhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHh
Q 043144 232 CKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDM 282 (580)
Q Consensus 232 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 282 (580)
...|++++|+..|+.+.+..+ .+...+..+...+...|++++|+..|++.
T Consensus 162 ~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 162 LSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC--------------
T ss_pred HHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 667777777777766666532 24556666666666666666666666554
No 41
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.69 E-value=6.3e-13 Score=136.49 Aligned_cols=427 Identities=10% Similarity=0.033 Sum_probs=238.3
Q ss_pred ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---hhHHHH
Q 043144 99 ELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGE---IDNALQ 175 (580)
Q Consensus 99 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~ 175 (580)
...+-+..|++.+.. .|-|...|..++..+.+.++++.+..+|+++...- |.....|...+..-.+.|+ ++.+..
T Consensus 47 ~~~d~i~~lE~~l~~-np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 47 DESDVIGKLNDMIEE-QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CCSCHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CCHHHHHHHHHHHHH-CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 345566667777766 45688899999999888899999999999988764 7778888888888888888 999999
Q ss_pred HHHHc--CC--CCCcchHHHHHHHHHhcCCh--------hHHHHHHHHHHhC-CC-CC-ChhhHHHHHHHHH--------
Q 043144 176 VLERM--SV--APDVVTYNTILRTLCDSGKL--------NLAMEVLHKQLEK-EC-YP-DVITYTILIEATC-------- 232 (580)
Q Consensus 176 ~~~~~--~~--~~~~~~~~~l~~~~~~~g~~--------~~A~~~~~~~~~~-~~-~~-~~~~~~~li~~~~-------- 232 (580)
+|++. .. +|++..|...+....+.++. +...++|+.++.. |. .+ ....|...+....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 99987 32 37888888877766665543 3344677776643 44 33 3457777776543
Q ss_pred -hcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh-------------cCCHHHHHHHHHHhhh--CCC----C----
Q 043144 233 -KESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICK-------------EGRLDEAIKFLNDMPS--YGC----Q---- 288 (580)
Q Consensus 233 -~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~g~~~~A~~~~~~~~~--~~~----~---- 288 (580)
..++++.+.++|+.++......-..+|......-.. ..+++.|...+.++.. .++ +
T Consensus 205 eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~ 284 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLN 284 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSST
T ss_pred HHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccc
Confidence 234577888888888753111112333322211111 1122334444433211 010 0
Q ss_pred -------C-----C---HHHHHHHHHHHHhcC-------ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 043144 289 -------P-----N---VITHNIILRSMCSTG-------RWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAI 346 (580)
Q Consensus 289 -------~-----~---~~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 346 (580)
| + ...|...+.---..+ ..+.+..+|++.+.. ++.....|...+..+...|+.++|.
T Consensus 285 ~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~ 363 (679)
T 4e6h_A 285 QATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVI 363 (679)
T ss_dssp TCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHH
T ss_pred cchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHH
Confidence 0 0 123333333222221 012234456665554 2345556666666666666666664
Q ss_pred -HHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---------CCC------------HHHHHHHHH
Q 043144 347 -DILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGC---------YPD------------IVTYNTLLT 404 (580)
Q Consensus 347 -~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---------~~~------------~~~~~~li~ 404 (580)
++|++.... .+.+...|...+....+.|++++|..+|++++.... .|+ ..+|...+.
T Consensus 364 r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~ 442 (679)
T 4e6h_A 364 TKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMN 442 (679)
T ss_dssp HHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHH
Confidence 666666653 223444555566666666666666666666654210 021 124555555
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH
Q 043144 405 ALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVG-KTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVD 483 (580)
Q Consensus 405 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 483 (580)
...+.|+.+.|..+|..+.+.........|...+....+.+ +.+.|..+|+..++. .+-+...|...+......|+.+
T Consensus 443 ~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~ 521 (679)
T 4e6h_A 443 TMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEES 521 (679)
T ss_dssp HHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHH
Confidence 55556666666666666655411112233332222222333 356666666666554 2334445555555555666666
Q ss_pred HHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043144 484 EAIKLFHDLERLGVRP--NVITYNSIMLGLCKARQTYRAIDILADMVTR 530 (580)
Q Consensus 484 ~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 530 (580)
.|..+|+++....+.+ ....|...+..-...|+.+.+.++.+++.+.
T Consensus 522 ~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 522 QVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6666666665543211 2345555555555666666666666666654
No 42
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.69 E-value=9.1e-13 Score=135.28 Aligned_cols=431 Identities=10% Similarity=0.042 Sum_probs=301.7
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc--CCCCCcchHHHHHHHHHhcCC---hhHHHHHHH
Q 043144 136 RKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM--SVAPDVVTYNTILRTLCDSGK---LNLAMEVLH 210 (580)
Q Consensus 136 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~ 210 (580)
.+-+..|+..+..+ |.|..+|..++..+.+.++++.+..+|+++ ..|.....|...+..-.+.+. ++.+.++|+
T Consensus 49 ~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe 127 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLA 127 (679)
T ss_dssp SCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 34455556665555 789999999999999999999999999998 556677889999999999999 999999999
Q ss_pred HHHhCCC-CCChhhHHHHHHHHHhcCCH--------hHHHHHHHHHHH-cCC-CC-CHhHHHHHHHHHH---------hc
Q 043144 211 KQLEKEC-YPDVITYTILIEATCKESGV--------GQAMKLLDEMRN-KGC-IP-DVVTYNVLVNGIC---------KE 269 (580)
Q Consensus 211 ~~~~~~~-~~~~~~~~~li~~~~~~g~~--------~~A~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~---------~~ 269 (580)
+.+.... +|++..|...+....+.++. +...++|+.++. .|. .+ +...|...+.... .+
T Consensus 128 Ral~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq 207 (679)
T 4e6h_A 128 RCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQ 207 (679)
T ss_dssp HHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHH
Confidence 9998642 47888898888776665554 345578887665 354 44 4568888877543 23
Q ss_pred CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh-------------cCChHHHHHHHHHHHHc--CC----CCC-----
Q 043144 270 GRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCS-------------TGRWMDAERLLAEMVLK--GC----SPS----- 325 (580)
Q Consensus 270 g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------------~~~~~~a~~~~~~~~~~--~~----~~~----- 325 (580)
++++.+..+|++........-..+|.....--.. ..+++.|...+.++... ++ +..
T Consensus 208 ~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~ 287 (679)
T 4e6h_A 208 QRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQAT 287 (679)
T ss_dssp HHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCC
T ss_pred hHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccch
Confidence 4578899999998863222222334322111111 11233445555443221 11 110
Q ss_pred --------------hhhHHHHHHHHHhcC-------CHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHH-HH
Q 043144 326 --------------VVTFNILINFLCRKG-------LLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAI-EY 383 (580)
Q Consensus 326 --------------~~~~~~l~~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~ 383 (580)
...|...+..--..+ ..+.+..+|++.+... +-.+..|...+..+...|+.++|. .+
T Consensus 288 ~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~i 366 (679)
T 4e6h_A 288 ESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKY 366 (679)
T ss_dssp TTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHH
T ss_pred hccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 123444444333222 1234567788887763 337888998888888999999997 99
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC---------CCC------------CHHHHHHHHHHHH
Q 043144 384 LEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKH---------CSP------------VLITYNTVIDGLS 442 (580)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---------~~~------------~~~~~~~l~~~~~ 442 (580)
|++.... +..+...+...+...-+.|+++.|..+|+.+.... ..| ...+|...+....
T Consensus 367 l~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~er 445 (679)
T 4e6h_A 367 LKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMK 445 (679)
T ss_dssp HHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHH
Confidence 9999875 33466678888888999999999999999987631 013 1346778888888
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043144 443 KVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSRE-GKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAI 521 (580)
Q Consensus 443 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 521 (580)
+.|..+.|..+|.++++....+....|...+..-.+. ++.+.|..+|+...+.-+ .+...|...+......|+.+.|+
T Consensus 446 R~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p-~~~~~w~~y~~fe~~~~~~~~AR 524 (679)
T 4e6h_A 446 RIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFA-TDGEYINKYLDFLIYVNEESQVK 524 (679)
T ss_dssp HHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHhCCCHHHHH
Confidence 8999999999999998761122334454444333444 459999999999987533 36777788888888899999999
Q ss_pred HHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc
Q 043144 522 DILADMVTRSCKP--TEATYTILIEGIAYEGLAKEALDLLNQLCSRGVVKK 570 (580)
Q Consensus 522 ~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~ 570 (580)
.+|++++....++ ....|...+..-...|+.+.+.++.+++.+.-+..+
T Consensus 525 ~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 525 SLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 9999999764222 356788888888999999999999999999876543
No 43
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.68 E-value=1.3e-14 Score=134.37 Aligned_cols=247 Identities=10% Similarity=0.005 Sum_probs=127.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC--HhhHHHHHHH
Q 043144 293 THNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPN--SLSYNPVLHG 370 (580)
Q Consensus 293 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~ 370 (580)
.+......+...|++++|...|+++++.. +.+...+..+..+|...|++++|...++++.+....++ ...|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 34445555666666666666666666553 23344566666666666666666666666665321111 1225556666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 043144 371 FCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQA 450 (580)
Q Consensus 371 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 450 (580)
+...|++++|+..|++..+..+. +..++..+...|...|++++|...+++..+.. +.+...|..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666554322 33455556666666666666666666555543 23344444444222233355666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHhCC-CCCC------HHHHHHHHHHHHhcCCHHHH
Q 043144 451 MKLLEEMRTKGLKPDTITYSSLVGGLSREGK---VDEAIKLFHDLERLG-VRPN------VITYNSIMLGLCKARQTYRA 520 (580)
Q Consensus 451 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~~~A 520 (580)
...|+++.+.. +.+...+..+...+...|+ +++|...++++.+.. ..|+ ...|..+...|...|++++|
T Consensus 162 ~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 162 DSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 66665555442 2234444455555555555 555555555554321 0111 13444555555555555555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHH
Q 043144 521 IDILADMVTRSCKPTEATYTILIE 544 (580)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~l~~ 544 (580)
.+.++++++.. |.++..+..+..
T Consensus 241 ~~~~~~al~~~-p~~~~a~~~l~~ 263 (272)
T 3u4t_A 241 DAAWKNILALD-PTNKKAIDGLKM 263 (272)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHC-
T ss_pred HHHHHHHHhcC-ccHHHHHHHhhh
Confidence 55555555442 334444444433
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.68 E-value=2e-14 Score=133.06 Aligned_cols=231 Identities=9% Similarity=0.030 Sum_probs=132.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHc--CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--hhhHHHHHHHHH
Q 043144 157 YNVLISGYCRLGEIDNALQVLERM--SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPD--VITYTILIEATC 232 (580)
Q Consensus 157 ~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~ 232 (580)
+...+..+...|++++|+..|+++ ..+.+...+..++.++...|++++|++.++++++....++ ...|..+...+.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 344455555556666666655555 2223344555566666666666666666666655221111 122556666666
Q ss_pred hcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 043144 233 KESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAER 312 (580)
Q Consensus 233 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 312 (580)
..|++++|...|+.+.+... .+..+|..+...|...|++++|+..|++..+.. +.+...+..+...+...+++++|..
T Consensus 86 ~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666665532 245666677777777777777777777766552 3445555555523334447777777
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCC---HHHHHHHHHHhhhCC-CCCC------HhhHHHHHHHHHhcCCHHHHHH
Q 043144 313 LLAEMVLKGCSPSVVTFNILINFLCRKGL---LGRAIDILEKMPKHG-CTPN------SLSYNPVLHGFCKEKKMDRAIE 382 (580)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~~~~~~A~~ 382 (580)
.|+.+.+.. +.+...+..+..++...|+ +++|...++++.+.. ..|+ ..++..+...|...|++++|..
T Consensus 164 ~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 164 SFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 777776653 3334555566666666666 556666666555431 0112 1345556666666677777777
Q ss_pred HHHHHHHC
Q 043144 383 YLEIMVSR 390 (580)
Q Consensus 383 ~~~~~~~~ 390 (580)
.|+++.+.
T Consensus 243 ~~~~al~~ 250 (272)
T 3u4t_A 243 AWKNILAL 250 (272)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 77766654
No 45
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.68 E-value=1.7e-13 Score=126.81 Aligned_cols=224 Identities=9% Similarity=-0.023 Sum_probs=143.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 043144 325 SVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCK----EKKMDRAIEYLEIMVSRGCYPDIVTYN 400 (580)
Q Consensus 325 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~ 400 (580)
+...+..+...+...|++++|...|++..+. .+...+..+...|.. .+++++|+..|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3445555555666666666666666665552 234455555666666 666666666666666543 455566
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043144 401 TLLTALCK----DGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSK----VGKTEQAMKLLEEMRTKGLKPDTITYSSL 472 (580)
Q Consensus 401 ~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 472 (580)
.+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 66666666 666666666666666543 45556666666666 677777777777766654 45556666
Q ss_pred HHHHHh----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043144 473 VGGLSR----EGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCK----ARQTYRAIDILADMVTRSCKPTEATYTILIE 544 (580)
Q Consensus 473 ~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 544 (580)
...+.. .+++++|...|++..+.+ +...+..+..+|.. .+++++|+..+++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 666666 677777777777776643 45566667777777 777777777777777653 2566667777
Q ss_pred HHHh----cCCHHHHHHHHHHHHhCC
Q 043144 545 GIAY----EGLAKEALDLLNQLCSRG 566 (580)
Q Consensus 545 ~~~~----~g~~~~A~~~~~~~~~~g 566 (580)
.|.. .|++++|.+++++..+.|
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 7776 777777777777777766
No 46
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.67 E-value=2.2e-16 Score=161.94 Aligned_cols=117 Identities=17% Similarity=0.173 Sum_probs=76.0
Q ss_pred hhhHHHHHHHHHhcCCHhHHHHHHHHHHH---cCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 043144 221 VITYTILIEATCKESGVGQAMKLLDEMRN---KGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNII 297 (580)
Q Consensus 221 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 297 (580)
..+|+++|++|++.|++++|.++|++|.+ .|+.||+++||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 44666666666666666666666655542 356666666666666666666666666666666666666666666666
Q ss_pred HHHHHhcCCh-HHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 043144 298 LRSMCSTGRW-MDAERLLAEMVLKGCSPSVVTFNILINFLC 337 (580)
Q Consensus 298 l~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 337 (580)
|.++++.|+. ++|.++|++|.+.|+.||..+|+.++..+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~e 247 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEED 247 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhh
Confidence 6666666653 566666666666666666666666665443
No 47
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.67 E-value=1.2e-14 Score=139.90 Aligned_cols=229 Identities=10% Similarity=0.046 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC-HHHHHHHHHHhhhCCCCCCHhhHHHHHHH
Q 043144 292 ITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGL-LGRAIDILEKMPKHGCTPNSLSYNPVLHG 370 (580)
Q Consensus 292 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 370 (580)
..|..+...+...|++++|+..++++++.. +.+...|..+..++...|+ +++|+..|+++++..+. +...|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 445555555666666666666666666553 3345556666666666664 66666666666665433 55566666666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-CCCHHH
Q 043144 371 FCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSK-VGKTEQ 449 (580)
Q Consensus 371 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~ 449 (580)
+...|++++|+..|+++++..+. +...|..+..++...|++++|+..++++.+.+ +.+...|+.+..++.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence 66666666666666666654332 44566666666666666666666666666554 2345555555555555 444344
Q ss_pred H-----HHHHHHHHHCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-------
Q 043144 450 A-----MKLLEEMRTKGLKPDTITYSSLVGGLSREG--KVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKAR------- 515 (580)
Q Consensus 450 A-----~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------- 515 (580)
| +..|++.+... +-+...|..+...+...| ++++|.+.+.++ +..+ .+...+..++.+|...|
T Consensus 254 A~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p-~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSH-SSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTC-CCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCC-CCHHHHHHHHHHHHHHhcccccch
Confidence 4 35555555432 223445555555555555 355555555555 3222 24455555555555542
Q ss_pred --CHHHHHHHHHHH
Q 043144 516 --QTYRAIDILADM 527 (580)
Q Consensus 516 --~~~~A~~~~~~~ 527 (580)
.+++|+++++++
T Consensus 331 ~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 331 EDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 135555555555
No 48
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.67 E-value=1.9e-14 Score=138.47 Aligned_cols=245 Identities=9% Similarity=0.000 Sum_probs=184.2
Q ss_pred ccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 043144 85 FESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGK-TRKATRVMEIVEDSGAVPDVITYNVLISG 163 (580)
Q Consensus 85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (580)
..|+.+...+...|++++|+..|++++.. .|.+..+|+.+..++...|+ +++|+..|++++... +.+...|..++.+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l-~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIEL-NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHh-CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 35677778888889999999999998886 45677888888888999996 999999999988876 6678888889999
Q ss_pred HHhcCChhHHHHHHHHc--CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-cCCHhHH
Q 043144 164 YCRLGEIDNALQVLERM--SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCK-ESGVGQA 240 (580)
Q Consensus 164 ~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A 240 (580)
+...|++++|+..|+++ -.+.+..+|..++.++.+.|++++|+..|+++++.+ +.+...|+.+..++.. .|..++|
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHH
Confidence 98999999999999887 334567788888888888899999999998888875 2367788888888888 5555777
Q ss_pred -----HHHHHHHHHcCCCCCHhHHHHHHHHHHhcC--CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcC--------
Q 043144 241 -----MKLLDEMRNKGCIPDVVTYNVLVNGICKEG--RLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTG-------- 305 (580)
Q Consensus 241 -----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-------- 305 (580)
+..|+..++.... +...|+.+..++...| ++++|++.+.++ +.. +.+...+..+..+|...|
T Consensus 255 ~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 255 VLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccchH
Confidence 4777777776422 5677888888777777 578888888777 332 455667777777777653
Q ss_pred -ChHHHHHHHHHH-HHcCCCCChhhHHHHHHHH
Q 043144 306 -RWMDAERLLAEM-VLKGCSPSVVTFNILINFL 336 (580)
Q Consensus 306 -~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~ 336 (580)
..++|.++++.+ .+.+ +.....|..+...+
T Consensus 332 ~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l 363 (382)
T 2h6f_A 332 DILNKALELCEILAKEKD-TIRKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence 247777787777 5442 22334555554444
No 49
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.67 E-value=2.6e-15 Score=139.17 Aligned_cols=246 Identities=14% Similarity=-0.007 Sum_probs=173.4
Q ss_pred HHcCChHHHHHHHHHHHhCCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 043144 95 VRNGELEEGFKFLESMVYHGD---IPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEID 171 (580)
Q Consensus 95 ~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 171 (580)
...|++++|+..|++++.... +.+..++..++..+...|++++|...|+++.+.. +.+..+|..++..|...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 345789999999999988632 2245778889999999999999999999998876 667889999999999999999
Q ss_pred HHHHHHHHc--CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 043144 172 NALQVLERM--SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRN 249 (580)
Q Consensus 172 ~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 249 (580)
+|+..|+++ ..+.+..++..++.++...|++++|...|+++.+.. |+.......+..+...|++++|...++....
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 999999988 234467788899999999999999999999988864 4444444455556677888888888877776
Q ss_pred cCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 043144 250 KGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQ---PNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSV 326 (580)
Q Consensus 250 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 326 (580)
.. +++...+. ++..+...++.++|+..+.+....... .+...+..+...+...|++++|...|+++.+.. |+.
T Consensus 173 ~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~ 248 (275)
T 1xnf_A 173 KS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN 248 (275)
T ss_dssp HS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT
T ss_pred cC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh
Confidence 53 23334443 666677777888888888877653210 013555666666666667777776666666542 211
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHH
Q 043144 327 VTFNILINFLCRKGLLGRAIDIL 349 (580)
Q Consensus 327 ~~~~~l~~~~~~~g~~~~a~~~~ 349 (580)
+.....++...|++++|++.+
T Consensus 249 --~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 --FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --CHHHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHHHhhHHHH
Confidence 222234445555565555544
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.66 E-value=4.9e-14 Score=128.76 Aligned_cols=203 Identities=15% Similarity=-0.020 Sum_probs=126.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043144 362 LSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGL 441 (580)
Q Consensus 362 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 441 (580)
..+..+...+...|++++|...|+++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...|
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 3455555556666666666666666555422 244555666666666666666666666665543 23455566666666
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 043144 442 SKVGKTEQAMKLLEEMRTKGLKP-DTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRA 520 (580)
Q Consensus 442 ~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 520 (580)
...|++++|.++++++...+..| +...+..+...+...|++++|...++++.+..+. +...+..++.+|...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHHH
Confidence 66667777777666666522223 3455666666677777777777777776654433 566666777777777777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 043144 521 IDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGVV 568 (580)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 568 (580)
...++++.+.. +.+...+..++..+...|++++|.++++++.+..+.
T Consensus 195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 195 RQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 77777766542 455666677777777777777777777777766543
No 51
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.66 E-value=3.9e-13 Score=124.34 Aligned_cols=223 Identities=9% Similarity=-0.036 Sum_probs=132.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCHhhHHH
Q 043144 291 VITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCR----KGLLGRAIDILEKMPKHGCTPNSLSYNP 366 (580)
Q Consensus 291 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 366 (580)
..++..+...+...|++++|...|++..+. .+...+..+...|.. .+++++|...|++..+.+ +...+..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 344444445555555555555555555542 233444555555555 555555555555555543 4455555
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 043144 367 VLHGFCK----EKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCK----DGKVDVAVEILNQLSNKHCSPVLITYNTVI 438 (580)
Q Consensus 367 l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 438 (580)
+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+.
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 153 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILG 153 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHH
Confidence 5555555 566666666666665542 44555556666666 666666666666666543 344555555
Q ss_pred HHHHh----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 043144 439 DGLSK----VGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSR----EGKVDEAIKLFHDLERLGVRPNVITYNSIMLG 510 (580)
Q Consensus 439 ~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 510 (580)
..|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+..+
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~ 227 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAM 227 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHH
Confidence 56655 667777777777766653 44556666666666 777777777777776653 25556666667
Q ss_pred HHh----cCCHHHHHHHHHHHHHcC
Q 043144 511 LCK----ARQTYRAIDILADMVTRS 531 (580)
Q Consensus 511 ~~~----~g~~~~A~~~~~~~~~~~ 531 (580)
|.. .+++++|.+.+++..+.+
T Consensus 228 ~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 228 QYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHcCCCcccCHHHHHHHHHHHHHcC
Confidence 776 777777777777777654
No 52
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.65 E-value=1.2e-13 Score=123.48 Aligned_cols=204 Identities=11% Similarity=-0.051 Sum_probs=133.0
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043144 360 NSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVID 439 (580)
Q Consensus 360 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 439 (580)
+...+..+...+...|++++|+..++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 344555566666666666666666666665432 234566666666666666667766666666544 234556666667
Q ss_pred HHHhC-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 043144 440 GLSKV-GKTEQAMKLLEEMRTKGLKPD-TITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQT 517 (580)
Q Consensus 440 ~~~~~-g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 517 (580)
.+... |++++|...++++.+.+..|+ ...+..+...+...|++++|...++++.+..+. +...+..++.++...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCH
Confidence 77777 777777777777766222222 456666777777777777777777777665433 566677777777777777
Q ss_pred HHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 043144 518 YRAIDILADMVTRSCK-PTEATYTILIEGIAYEGLAKEALDLLNQLCSRGV 567 (580)
Q Consensus 518 ~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 567 (580)
++|...++++.+.. + .+...+..+...+...|+.+.|..+++.+.+..+
T Consensus 164 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p 213 (225)
T 2vq2_A 164 GDADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFP 213 (225)
T ss_dssp HHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Confidence 77777777777653 4 5666666667777777777777777777766543
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.65 E-value=2.2e-14 Score=130.25 Aligned_cols=199 Identities=12% Similarity=0.073 Sum_probs=92.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 043144 364 YNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSK 443 (580)
Q Consensus 364 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 443 (580)
+..+...+...|++++|...|+++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 103 (243)
T 2q7f_A 26 GGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVV 103 (243)
T ss_dssp ----------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHH
Confidence 33444444444455555555544444321 133344444444555555555555555444432 2234444555555555
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 043144 444 VGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDI 523 (580)
Q Consensus 444 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 523 (580)
.|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+..+. +...+..++.++...|++++|...
T Consensus 104 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~ 181 (243)
T 2q7f_A 104 KEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDEALSQ 181 (243)
T ss_dssp TTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred hccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHHHHHH
Confidence 555555555555554432 224445555555555555555555555555543322 444555555555555555555555
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 043144 524 LADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGV 567 (580)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 567 (580)
++++.+.. +.+..++..++.+|...|++++|.+.++++.+..+
T Consensus 182 ~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 224 (243)
T 2q7f_A 182 FAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224 (243)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence 55555442 34455555555555555555555555555555443
No 54
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.64 E-value=3.7e-16 Score=160.29 Aligned_cols=117 Identities=15% Similarity=0.227 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043144 396 IVTYNTLLTALCKDGKVDVAVEILNQLSN---KHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSL 472 (580)
Q Consensus 396 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 472 (580)
..+|+++|++|++.|++++|.++|.+|.+ .++.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 34677777777777777777777766543 345667777777777777777777777777777766777777777777
Q ss_pred HHHHHhCCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043144 473 VGGLSREGK-VDEAIKLFHDLERLGVRPNVITYNSIMLGLC 512 (580)
Q Consensus 473 ~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 512 (580)
|.++++.|+ .++|.++|++|.+.|+.||..+|++++..+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~e 247 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEED 247 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhh
Confidence 777666665 3566677777766666677776666665443
No 55
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.63 E-value=2.7e-14 Score=129.63 Aligned_cols=214 Identities=11% Similarity=0.073 Sum_probs=142.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043144 326 VVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTA 405 (580)
Q Consensus 326 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 405 (580)
...+..+...+...|++++|...|+++.+.... +...+..+...+...|++++|+..++++.+... .+...+..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHHH
Confidence 345566666677777777777777777665332 566677777777777777777777777776532 255677777777
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 043144 406 LCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEA 485 (580)
Q Consensus 406 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A 485 (580)
+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHH
Confidence 778888888888887777654 3456677777888888888888888888877653 34677778888888888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043144 486 IKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEG 545 (580)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 545 (580)
...++++.+..+. +..++..++.+|...|++++|...++++.+.. +.+...+..+...
T Consensus 179 ~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~l 236 (243)
T 2q7f_A 179 LSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDIQ-PDHMLALHAKKLL 236 (243)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC-TTCHHHHHHHTC-
T ss_pred HHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHccC-cchHHHHHHHHHH
Confidence 8888888765433 67778888888888888888888888888763 5556666555443
No 56
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.63 E-value=2.7e-13 Score=123.76 Aligned_cols=200 Identities=13% Similarity=-0.038 Sum_probs=131.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043144 327 VTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTAL 406 (580)
Q Consensus 327 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 406 (580)
..+..+...+...|++++|...|+++.+.... +...+..+...+...|++++|...++++.+.... +...+..+...+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHH
Confidence 44555555666666666666666666554322 4555666666666666666666666666654322 455666666677
Q ss_pred HhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 043144 407 CKDGKVDVAVEILNQLSNKHCSP-VLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEA 485 (580)
Q Consensus 407 ~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A 485 (580)
...|++++|...++++...+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 77777777777777766522123 34566667777777777777777777776653 33566777777777778888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043144 486 IKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTR 530 (580)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 530 (580)
...++++.+..+ .+...+..++..+...|++++|.+.++++.+.
T Consensus 195 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 888877776543 35666777777777788888888888777765
No 57
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.63 E-value=6e-15 Score=136.75 Aligned_cols=221 Identities=13% Similarity=-0.075 Sum_probs=131.6
Q ss_pred HhcCChHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHc--CCCCCcchHHHHHHHHHhcCChhH
Q 043144 130 CKVGKTRKATRVMEIVEDSGA---VPDVITYNVLISGYCRLGEIDNALQVLERM--SVAPDVVTYNTILRTLCDSGKLNL 204 (580)
Q Consensus 130 ~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~ 204 (580)
...|++++|...|+.+.+... +.+..++..++..|...|++++|+..|+++ ..+.+..+|..++..+...|++++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 345777888888888877532 224566777777788888888888888776 223456677777777777777777
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 043144 205 AMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPS 284 (580)
Q Consensus 205 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 284 (580)
|...|+++++.. +.+...+..+...+...|++++|...|+.+.+.. |+.......+..+...|++++|...+.+...
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 777777777653 2245666667777777777777777777766652 3333333333444555666666666655544
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 043144 285 YGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCS---PSVVTFNILINFLCRKGLLGRAIDILEKMPKH 355 (580)
Q Consensus 285 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 355 (580)
.. +++...+ .++..+...++.++|...+..+...... .+...+..+...|...|++++|...|+++.+.
T Consensus 173 ~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 173 KS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 32 2222222 2444455555556666666555433110 01344555555555555555555555555544
No 58
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.62 E-value=1.6e-13 Score=122.74 Aligned_cols=196 Identities=17% Similarity=0.082 Sum_probs=86.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc--CCCCCcchHHHHHHHHH
Q 043144 120 IPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM--SVAPDVVTYNTILRTLC 197 (580)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~ 197 (580)
..+..++..+...|++++|...|+.+.+.. +.+...+..++..|...|++++|++.++++ ..+.+..++..++..+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 344444444555555555555555444433 333444444445555555555555554444 11223334444444444
Q ss_pred hc-CChhHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHH
Q 043144 198 DS-GKLNLAMEVLHKQLEKECYP-DVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEA 275 (580)
Q Consensus 198 ~~-g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 275 (580)
.. |++++|...++++.+.+..| +...+..+...+...|++++|...++++.+... .+...+..++..+...|++++|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHH
T ss_pred HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCCHHHH
Confidence 44 55555555544444411111 123344444444444555555544444444321 1344444444444445555555
Q ss_pred HHHHHHhhhCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043144 276 IKFLNDMPSYGCQ-PNVITHNIILRSMCSTGRWMDAERLLAEMV 318 (580)
Q Consensus 276 ~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 318 (580)
...++++.+.. + .+...+..+...+...|+.+.+..+++.+.
T Consensus 167 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 167 DYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 54444444322 1 233334444444444444444444444443
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.59 E-value=3.4e-14 Score=140.14 Aligned_cols=273 Identities=15% Similarity=0.070 Sum_probs=152.1
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCChHHHHHHHHHHHhC----C-CCCCHHH
Q 043144 86 ESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDI----IPCTSLIRGFCKVGKTRKATRVMEIVEDS----G-AVPDVIT 156 (580)
Q Consensus 86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~ 156 (580)
.+..+...+...|++++|+..|++++... +.+. .++..+...|...|++++|...|++.... + .+....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 44566778888899999999999888763 3333 46778888888899999999888877653 1 1334556
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHc-------C-CCCCcchHHHHHHHHHhcCC-----------------hhHHHHHHHH
Q 043144 157 YNVLISGYCRLGEIDNALQVLERM-------S-VAPDVVTYNTILRTLCDSGK-----------------LNLAMEVLHK 211 (580)
Q Consensus 157 ~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~~ 211 (580)
+..++..|...|++++|+..|+++ + .+....++..++..|...|+ +++|++.+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 777888888888888888888775 1 11123456667777777777 6666666555
Q ss_pred HHhCC----C-CCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC-CCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 043144 212 QLEKE----C-YPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCI-PDVVTYNVLVNGICKEGRLDEAIKFLNDMPSY 285 (580)
Q Consensus 212 ~~~~~----~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 285 (580)
.++.. . +....++..+...+...|++++|...+++..+.... ++..
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------------------------- 260 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA---------------------------- 260 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH----------------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH----------------------------
Confidence 44320 0 001223444444455555555555555544332100 0000
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-----CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC----
Q 043144 286 GCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCS-----PSVVTFNILINFLCRKGLLGRAIDILEKMPKHG---- 356 (580)
Q Consensus 286 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---- 356 (580)
.....+..+...+...|++++|...++++.+.... ....++..+...|...|++++|...+++..+..
T Consensus 261 ---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 261 ---AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp ---HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 00113344444444455555555544444332100 012344455555555555555555555544320
Q ss_pred -CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043144 357 -CTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSR 390 (580)
Q Consensus 357 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 390 (580)
......++..+...|...|++++|...+++..+.
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 0011334555666666666666666666666553
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.59 E-value=5.9e-14 Score=138.07 Aligned_cols=300 Identities=13% Similarity=0.031 Sum_probs=175.6
Q ss_pred hhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHH
Q 043144 221 VITYTILIEATCKESGVGQAMKLLDEMRNKGCIPD----VVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNI 296 (580)
Q Consensus 221 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 296 (580)
...+......+...|++++|...|+++.+.+.. + ..++..+...+...|++++|...+++.....
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---------- 77 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA---------- 77 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH----------
Confidence 334445555556666666666666665554211 2 2345555555555666666665555543210
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-----CCCHhhHHHHHHH
Q 043144 297 ILRSMCSTGRWMDAERLLAEMVLKGCS-PSVVTFNILINFLCRKGLLGRAIDILEKMPKHGC-----TPNSLSYNPVLHG 370 (580)
Q Consensus 297 ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~ 370 (580)
...+.. ....++..+...|...|++++|...+++..+... .....++..+...
T Consensus 78 ---------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 136 (406)
T 3sf4_A 78 ---------------------RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNV 136 (406)
T ss_dssp ---------------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ---------------------HhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 000000 0122344444455555555555555544433200 0012245555566
Q ss_pred HHhcCC--------------------HHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 043144 371 FCKEKK--------------------MDRAIEYLEIMVSR----GCYPD-IVTYNTLLTALCKDGKVDVAVEILNQLSNK 425 (580)
Q Consensus 371 ~~~~~~--------------------~~~A~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 425 (580)
|...|+ +++|...+++..+. +..|. ..++..+...+...|++++|...+++..+.
T Consensus 137 ~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (406)
T 3sf4_A 137 YHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 216 (406)
T ss_dssp HHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHH
T ss_pred HHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 666666 66666666655431 11111 236677777788888888888888776543
Q ss_pred CC-CCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 043144 426 HC-SPV----LITYNTVIDGLSKVGKTEQAMKLLEEMRTK----GLKP-DTITYSSLVGGLSREGKVDEAIKLFHDLERL 495 (580)
Q Consensus 426 ~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 495 (580)
.. .++ ...+..+...|...|++++|...+++.... +..+ ...++..+...+...|++++|...++++.+.
T Consensus 217 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 217 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 20 011 236777888888889999998888887643 1111 1456778888889999999999999887642
Q ss_pred CCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHhcCCH
Q 043144 496 GVR-PN----VITYNSIMLGLCKARQTYRAIDILADMVTR----SC-KPTEATYTILIEGIAYEGLA 552 (580)
Q Consensus 496 ~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~ 552 (580)
... ++ ..++..+..+|...|++++|...+++.++. +. +....++..++..+...|+.
T Consensus 297 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 297 AQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 111 11 557788888999999999999999887643 11 11245677788888887766
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.58 E-value=5.7e-14 Score=138.20 Aligned_cols=131 Identities=12% Similarity=0.014 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----hh
Q 043144 258 TYNVLVNGICKEGRLDEAIKFLNDMPSYGC-QPN----VITHNIILRSMCSTGRWMDAERLLAEMVLKGCS-PS----VV 327 (580)
Q Consensus 258 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~ 327 (580)
++..+...|...|++++|...+++..+... .++ ..++..+...+...|++++|...+++..+.... .+ ..
T Consensus 189 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 268 (406)
T 3sf4_A 189 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 268 (406)
T ss_dssp HHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHH
Confidence 455566666666666666666666543100 011 124555555566666666666666555432100 01 23
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-CC----HhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043144 328 TFNILINFLCRKGLLGRAIDILEKMPKHGCT-PN----SLSYNPVLHGFCKEKKMDRAIEYLEIMV 388 (580)
Q Consensus 328 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 388 (580)
++..+...|...|++++|...+++..+.... .+ ..++..+...|...|++++|...+++..
T Consensus 269 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 269 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 334 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555556666666666666666555432100 01 2344455555556666666666655544
No 62
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.58 E-value=5.7e-14 Score=138.54 Aligned_cols=280 Identities=13% Similarity=0.023 Sum_probs=143.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHc----C-CCCChhh
Q 043144 258 TYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNV----ITHNIILRSMCSTGRWMDAERLLAEMVLK----G-CSPSVVT 328 (580)
Q Consensus 258 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~ 328 (580)
.+..+...+...|++++|+..|+++.+.+ +.+. ..+..+...+...|++++|...++++++. + .+.....
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 34445556666677777777776666542 2222 34555666666666666666666665542 1 0112234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCC-----CCCCHhhHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCC
Q 043144 329 FNILINFLCRKGLLGRAIDILEKMPKHG-----CTPNSLSYNPVLHGFCKEKK----------MDRAIEYLEIMVSRGCY 393 (580)
Q Consensus 329 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~ 393 (580)
+..+...|...|++++|...+++..+.. .+....++..+...|...|+ +++|...
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~---------- 198 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA---------- 198 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH----------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH----------
Confidence 4555555555566666655555544320 00012233444444444444 0000000
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-CC--
Q 043144 394 PDIVTYNTLLTALCKDGKVDVAVEILNQLSNK----H-CSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLK-PD-- 465 (580)
Q Consensus 394 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~-- 465 (580)
+++|...+++..+. + .+.....+..+...|...|++++|...+++..+.... ++
T Consensus 199 ------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 260 (411)
T 4a1s_A 199 ------------------LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA 260 (411)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred ------------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH
Confidence 44444444443221 0 0011234555556666666666666666665432100 01
Q ss_pred --HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-C
Q 043144 466 --TITYSSLVGGLSREGKVDEAIKLFHDLERLGVR-----PNVITYNSIMLGLCKARQTYRAIDILADMVTR----SC-K 533 (580)
Q Consensus 466 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~ 533 (580)
..++..+...+...|++++|...++++.+.... ....++..++.+|...|++++|...++++++. +. .
T Consensus 261 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 340 (411)
T 4a1s_A 261 AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRI 340 (411)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChH
Confidence 125556666666777777777777665432110 01345666666777777777777777766543 10 0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043144 534 PTEATYTILIEGIAYEGLAKEALDLLNQLCSRG 566 (580)
Q Consensus 534 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 566 (580)
....++..++.+|...|++++|.+++++..+..
T Consensus 341 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 341 GEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 113356666777777777777777777766543
No 63
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.57 E-value=3e-12 Score=120.56 Aligned_cols=185 Identities=11% Similarity=0.002 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HH-HHHHHHHHHHhCCCHHHHHHHH
Q 043144 378 DRAIEYLEIMVS-RGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPV-LI-TYNTVIDGLSKVGKTEQAMKLL 454 (580)
Q Consensus 378 ~~A~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~g~~~~A~~~~ 454 (580)
++|..+|++.++ ..+ .+...|..++..+.+.|++++|..+|+++.+.. |+ .. .|..++..+.+.|++++|..+|
T Consensus 81 ~~A~~~~~rAl~~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~~ 157 (308)
T 2ond_A 81 DEAANIYERAISTLLK-KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS--SSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc--ccCccHHHHHHHHHHHHhcCHHHHHHHH
Confidence 455555555444 111 123344445555555555555555555554432 21 21 4444555555555555555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHH-hCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-C
Q 043144 455 EEMRTKGLKPDTITYSSLVGGLS-REGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRS-C 532 (580)
Q Consensus 455 ~~m~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~ 532 (580)
++.++.. +++...|...+.... ..|++++|..+|+++.+..+. +...|..++..+...|++++|+.+|++++... +
T Consensus 158 ~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l 235 (308)
T 2ond_A 158 KKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCC
Confidence 5555432 122223322222211 245555555555555443322 44555555555555555555555555555431 2
Q ss_pred CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 043144 533 KP--TEATYTILIEGIAYEGLAKEALDLLNQLCSRGV 567 (580)
Q Consensus 533 ~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 567 (580)
+| ....|..++......|+.+.|..+++++.+..+
T Consensus 236 ~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence 32 244555555555555555555555555555443
No 64
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.56 E-value=2.5e-12 Score=121.05 Aligned_cols=217 Identities=8% Similarity=-0.033 Sum_probs=149.1
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHH-------hcCCh-------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 043144 101 EEGFKFLESMVYHGDIPDIIPCTSLIRGFC-------KVGKT-------RKATRVMEIVEDSGAVPDVITYNVLISGYCR 166 (580)
Q Consensus 101 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 166 (580)
++|+..|++++.. .|.+...|..++..+. +.|++ ++|..+|++.+..-.|.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~-~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 6778888888775 4566777887777765 35775 7888888888773225566678888888888
Q ss_pred cCChhHHHHHHHHc-CCCCC-cc-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH-hcCCHhHHHH
Q 043144 167 LGEIDNALQVLERM-SVAPD-VV-TYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATC-KESGVGQAMK 242 (580)
Q Consensus 167 ~g~~~~A~~~~~~~-~~~~~-~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~ 242 (580)
.|++++|..+|+++ ...|+ .. +|..++..+.+.|++++|..+|+++++.. +++...|...+.... ..|++++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 88888888888887 54554 33 67888888888888888888888887754 233444443333322 2577777777
Q ss_pred HHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043144 243 LLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYG-CQP--NVITHNIILRSMCSTGRWMDAERLLAEMVL 319 (580)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 319 (580)
+|+...+.. +.+...|..++..+.+.|++++|..+|++..... ++| ....|..++......|+.+.|..+++++.+
T Consensus 191 ~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 191 IFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777776653 2256677777777777777777777777777642 233 345666666666777777777777777766
Q ss_pred c
Q 043144 320 K 320 (580)
Q Consensus 320 ~ 320 (580)
.
T Consensus 270 ~ 270 (308)
T 2ond_A 270 A 270 (308)
T ss_dssp H
T ss_pred H
Confidence 5
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.56 E-value=1.2e-13 Score=131.92 Aligned_cols=273 Identities=16% Similarity=0.103 Sum_probs=149.9
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHhC----C-CCCCHHH
Q 043144 86 ESNNHLRRLVRNGELEEGFKFLESMVYHGDIPD----IIPCTSLIRGFCKVGKTRKATRVMEIVEDS----G-AVPDVIT 156 (580)
Q Consensus 86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~ 156 (580)
.+......+...|++++|+..|++++... +.+ ...+..+...+...|++++|...+++.... + .+....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 34455677888899999999998888763 333 356777888888888888888888876542 1 1223456
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHc----CCCCC----cchHHHHHHHHHhcCC--------------------hhHHHHH
Q 043144 157 YNVLISGYCRLGEIDNALQVLERM----SVAPD----VVTYNTILRTLCDSGK--------------------LNLAMEV 208 (580)
Q Consensus 157 ~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~----~~~~~~l~~~~~~~g~--------------------~~~A~~~ 208 (580)
+..++..|...|++++|...+++. ...++ ..++..++..+...|+ +++|...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 777778888888888888887775 11112 2256666667777776 6666655
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-CCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhC--
Q 043144 209 LHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGC-IPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSY-- 285 (580)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 285 (580)
+++.+... .. .+. .....++..+...+...|++++|...+++..+.
T Consensus 166 ~~~a~~~~----------------------------~~---~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 214 (338)
T 3ro2_A 166 YEENLSLV----------------------------TA---LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 214 (338)
T ss_dssp HHHHHHHH----------------------------HH---HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----------------------------Hh---cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 55543210 00 000 001223444444444444444444444443321
Q ss_pred --CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-C----ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 043144 286 --GC-QPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCS-P----SVVTFNILINFLCRKGLLGRAIDILEKMPKHGC 357 (580)
Q Consensus 286 --~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 357 (580)
+. .....++..+...+...|++++|...+++..+.... . ...++..+...+...|++++|...+++..+...
T Consensus 215 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 215 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 00 001123444444555555555555555544432100 0 023445555666666666666666655543210
Q ss_pred -----CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043144 358 -----TPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSR 390 (580)
Q Consensus 358 -----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 390 (580)
.....++..+...|...|++++|...+++..+.
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 001234555666666667777777666666553
No 66
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.55 E-value=1.1e-12 Score=113.13 Aligned_cols=168 Identities=13% Similarity=0.100 Sum_probs=110.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043144 395 DIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVG 474 (580)
Q Consensus 395 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 474 (580)
+..+|..+...|...|++++|+..|++..+.+ +.+...+..+..+|...|++++|...++...... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 34556666666666666666666666666554 3345566666666666677777776666666543 334555666666
Q ss_pred HHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 043144 475 GLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKE 554 (580)
Q Consensus 475 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 554 (580)
.+...++++.|...+.++....+. +...+..++.+|...|++++|++.+++.++.. |.+..+|..++.+|...|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 667777777777777776655433 56666677777777777777777777776653 5566677777777777777777
Q ss_pred HHHHHHHHHhCC
Q 043144 555 ALDLLNQLCSRG 566 (580)
Q Consensus 555 A~~~~~~~~~~g 566 (580)
|.+.++++++..
T Consensus 160 A~~~~~~al~~~ 171 (184)
T 3vtx_A 160 AVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhCC
Confidence 777777776653
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.55 E-value=5.3e-13 Score=130.21 Aligned_cols=232 Identities=8% Similarity=-0.064 Sum_probs=163.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhC----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CC-CHHHHH
Q 043144 332 LINFLCRKGLLGRAIDILEKMPKH----GCTP-NSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGC-----YP-DIVTYN 400 (580)
Q Consensus 332 l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~-~~~~~~ 400 (580)
....+...|++++|...+++..+. +-.+ ...++..+...|...|++++|+..+++..+... .+ ...++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455667778888888888877653 1111 235677777888888888888888887764211 11 124677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CC-CCCHHHHH
Q 043144 401 TLLTALCKDGKVDVAVEILNQLSNKHCS-PV----LITYNTVIDGLSKVGKTEQAMKLLEEMRTK----GL-KPDTITYS 470 (580)
Q Consensus 401 ~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~-~p~~~~~~ 470 (580)
.+..+|...|++++|...+++..+.... ++ ..++..+...|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 7888888889999998888887643200 11 246778888899999999999999888762 22 33456788
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhCCC---CC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043144 471 SLVGGLSREGKVDEAIKLFHDLERLGV---RP-NVITYNSIMLGLCKARQ---TYRAIDILADMVTRSCKPTEATYTILI 543 (580)
Q Consensus 471 ~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~ 543 (580)
.+...+...|++++|...+++..+... .| ....+..+...|...|+ +++|+.++++.. ..+.....+..++
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~--~~~~~~~~~~~la 346 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM--LYADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc--CHHHHHHHHHHHH
Confidence 888899999999999999998764311 11 22335677888888888 777777777652 1122345777889
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 043144 544 EGIAYEGLAKEALDLLNQLCSR 565 (580)
Q Consensus 544 ~~~~~~g~~~~A~~~~~~~~~~ 565 (580)
..|...|++++|.+++++..+.
T Consensus 347 ~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHH
Confidence 9999999999999999988753
No 68
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.54 E-value=1.8e-13 Score=130.61 Aligned_cols=274 Identities=16% Similarity=0.118 Sum_probs=179.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHc-------CCCC-Ccch
Q 043144 121 PCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPD----VITYNVLISGYCRLGEIDNALQVLERM-------SVAP-DVVT 188 (580)
Q Consensus 121 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~-~~~~ 188 (580)
.+......+...|++++|...|+++.+.. +.+ ...+..++..|...|++++|++.++++ +.++ ...+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 34455666777888888888888777764 333 355667777777777777777777664 1011 1234
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-CCCHhHHHHHHHHHH
Q 043144 189 YNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGC-IPDVVTYNVLVNGIC 267 (580)
Q Consensus 189 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~ 267 (580)
+..++..+...|++++|...+++.++... +.+. .....++..+...+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~-------------------------------~~~~~~~~~~~~~~l~~~~~ 134 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISR-------------------------------ELNDKVGEARALYNLGNVYH 134 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------------------HTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHH-------------------------------HhcCchHHHHHHHHHHHHHH
Confidence 44555555555555555555554433210 0000 001224555566666
Q ss_pred hcCC--------------------HHHHHHHHHHhhhC----C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--
Q 043144 268 KEGR--------------------LDEAIKFLNDMPSY----G-CQPNVITHNIILRSMCSTGRWMDAERLLAEMVLK-- 320 (580)
Q Consensus 268 ~~g~--------------------~~~A~~~~~~~~~~----~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-- 320 (580)
..|+ +++|...+++.... + .......+..+...+...|++++|...+++..+.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 214 (338)
T 3ro2_A 135 AKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 214 (338)
T ss_dssp HHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 6666 66666666654321 1 1122456778888999999999999999988753
Q ss_pred --CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-CC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-
Q 043144 321 --GC-SPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCT-PN----SLSYNPVLHGFCKEKKMDRAIEYLEIMVSRG- 391 (580)
Q Consensus 321 --~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 391 (580)
+. .....++..+...+...|++++|...+++..+.... .+ ..++..+...+...|++++|...+++..+..
T Consensus 215 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 215 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 11 112347888899999999999999999987653111 11 4567888899999999999999999886531
Q ss_pred ---CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 043144 392 ---CYP-DIVTYNTLLTALCKDGKVDVAVEILNQLSNKH 426 (580)
Q Consensus 392 ---~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 426 (580)
..+ ...++..+...|...|++++|...+++..+..
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 111 13477889999999999999999999988754
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.54 E-value=1e-12 Score=128.13 Aligned_cols=225 Identities=8% Similarity=-0.046 Sum_probs=122.2
Q ss_pred HHHHcCChHHHHHHHHHHHhC--CCCCCh--hhHHHHHHH--HHhcCChHHHH-----------HHHHHHHhCCCCCCHH
Q 043144 93 RLVRNGELEEGFKFLESMVYH--GDIPDI--IPCTSLIRG--FCKVGKTRKAT-----------RVMEIVEDSGAVPDVI 155 (580)
Q Consensus 93 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~--~~~~~l~~~--~~~~g~~~~A~-----------~~~~~~~~~~~~~~~~ 155 (580)
.+.+.+++++|..+.+++... ....|. ..|..++.. ..-.++++.+. +.++.+.... .+..
T Consensus 21 ~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~ 98 (383)
T 3ulq_A 21 MYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLT 98 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHH
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCch
Confidence 456788999999999888654 222333 333333322 12233344444 5666554421 1111
Q ss_pred H------HHHHHHHHHhcCChhHHHHHHHHc-CC---CCC----cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-C-
Q 043144 156 T------YNVLISGYCRLGEIDNALQVLERM-SV---APD----VVTYNTILRTLCDSGKLNLAMEVLHKQLEKECY-P- 219 (580)
Q Consensus 156 ~------~~~l~~~~~~~g~~~~A~~~~~~~-~~---~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~- 219 (580)
. +...+..+...|++++|+..|+++ .. .+| ..++..++..|...|++++|+..++++++.... +
T Consensus 99 ~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~ 178 (383)
T 3ulq_A 99 GLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA 178 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc
Confidence 1 222566667788888888888776 21 122 345777777777777777777777776643111 0
Q ss_pred ----ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC-CC----HhHHHHHHHHHHhcCCHHHHHHHHHHhhhC----C
Q 043144 220 ----DVITYTILIEATCKESGVGQAMKLLDEMRNKGCI-PD----VVTYNVLVNGICKEGRLDEAIKFLNDMPSY----G 286 (580)
Q Consensus 220 ----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~ 286 (580)
...++..+...|...|++++|...|++..+.... ++ ..++..+..+|...|++++|+..|++..+. +
T Consensus 179 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 258 (383)
T 3ulq_A 179 YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN 258 (383)
T ss_dssp THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Confidence 1234555666666666666666666665532100 01 124555666666666666666666655431 1
Q ss_pred C-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043144 287 C-QPNVITHNIILRSMCSTGRWMDAERLLAEMVL 319 (580)
Q Consensus 287 ~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 319 (580)
. +....++..+...+...|++++|...+++..+
T Consensus 259 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 292 (383)
T 3ulq_A 259 ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMA 292 (383)
T ss_dssp CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 22234455555555555555555555555543
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.54 E-value=3.9e-13 Score=134.52 Aligned_cols=213 Identities=8% Similarity=-0.021 Sum_probs=150.9
Q ss_pred HHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 043144 342 LGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKM-DRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILN 420 (580)
Q Consensus 342 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 420 (580)
++++...++...... +.+...+..+...+...|++ ++|+..|++.++..+. +...+..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455555665554432 23566677777777777777 7777777777765322 45677777777777777777777777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhC---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC--------CCHH
Q 043144 421 QLSNKHCSPVLITYNTVIDGLSKV---------GKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSRE--------GKVD 483 (580)
Q Consensus 421 ~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--------g~~~ 483 (580)
++.+.. |+...+..+...|... |++++|...|++..+.. +.+...|..+..+|... |+++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 777665 5566777777777777 77888888888877653 33566777777777777 7788
Q ss_pred HHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043144 484 EAIKLFHDLERLGVR--PNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLN 560 (580)
Q Consensus 484 ~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 560 (580)
+|...|+++.+..+. .+...|..+..+|...|++++|++.|+++++.. +.+...+..+..++...|++++|.+.++
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888888888765431 267778888888888888888888888887663 5566777788888888888887776543
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.53 E-value=2.6e-13 Score=135.78 Aligned_cols=214 Identities=11% Similarity=-0.022 Sum_probs=152.4
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHc--CCCCCcchHHHHHHHHHhcCChhHHHHHHH
Q 043144 134 KTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEI-DNALQVLERM--SVAPDVVTYNTILRTLCDSGKLNLAMEVLH 210 (580)
Q Consensus 134 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 210 (580)
.++++...++...... +.+...+..++..|...|++ ++|++.|+++ ..+.+..+|..++.+|.+.|++++|.+.|+
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3566666776665543 45667777777777777777 7777777776 223346677777777777777777777777
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhc---------CCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc--------CCHH
Q 043144 211 KQLEKECYPDVITYTILIEATCKE---------SGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKE--------GRLD 273 (580)
Q Consensus 211 ~~~~~~~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~ 273 (580)
++++.. |+...+..+...+... |++++|...|+++.+... .+...|..+..+|... |+++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 777754 5566777777777777 778888888887777642 2567777777777777 7788
Q ss_pred HHHHHHHHhhhCCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 043144 274 EAIKFLNDMPSYGCQ---PNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILE 350 (580)
Q Consensus 274 ~A~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 350 (580)
+|+..|++..+.. + .+...|..+..++...|++++|...|+++.+.. +.+...+..+..++...|++++|.+.+.
T Consensus 239 ~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 239 QALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888888777653 2 466777777778888888888888888877764 3355667777777777788887777665
Q ss_pred Hhh
Q 043144 351 KMP 353 (580)
Q Consensus 351 ~~~ 353 (580)
++.
T Consensus 317 ~~~ 319 (474)
T 4abn_A 317 KTK 319 (474)
T ss_dssp TCC
T ss_pred ccc
Confidence 553
No 72
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.51 E-value=3.5e-12 Score=110.06 Aligned_cols=167 Identities=14% Similarity=0.096 Sum_probs=120.9
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043144 360 NSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVID 439 (580)
Q Consensus 360 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 439 (580)
+..+|..+...|...|++++|+..|++.++..+. +..++..+..+|.+.|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 5566777777777777777777777777765433 45577777777777777777777777776654 334556666677
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 043144 440 GLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYR 519 (580)
Q Consensus 440 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 519 (580)
.+...++++.|...+.+..... +.+...+..+...+...|++++|++.|+++.+..+. +..+|..++.+|...|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHH
Confidence 7777778888888777777653 345667777777888888888888888887766544 67777788888888888888
Q ss_pred HHHHHHHHHHc
Q 043144 520 AIDILADMVTR 530 (580)
Q Consensus 520 A~~~~~~~~~~ 530 (580)
|++.++++++.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 88888887764
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.48 E-value=2.4e-13 Score=128.39 Aligned_cols=246 Identities=14% Similarity=0.030 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHc-------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC------CC
Q 043144 291 VITHNIILRSMCSTGRWMDAERLLAEMVLK-------GCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKH------GC 357 (580)
Q Consensus 291 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~ 357 (580)
..++..+...+...|++++|..+++++.+. ..+.....+..+...|...|++++|...++++.+. +.
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 445556666666666666666666666542 11223344555556666666666666666555432 10
Q ss_pred -CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 043144 358 -TPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNT 436 (580)
Q Consensus 358 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 436 (580)
+....++..+...+...|++++|...++++.+... .......+.....+..
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~----------------------------~~~~~~~~~~~~~~~~ 158 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE----------------------------KVLGKDHPDVAKQLNN 158 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH----------------------------HHHCTTCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH----------------------------HhcCCCChHHHHHHHH
Confidence 11223344444555555555555555554443200 0000000112233444
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC-------CCC---
Q 043144 437 VIDGLSKVGKTEQAMKLLEEMRTK------GLKP-DTITYSSLVGGLSREGKVDEAIKLFHDLERLG-------VRP--- 499 (580)
Q Consensus 437 l~~~~~~~g~~~~A~~~~~~m~~~------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~--- 499 (580)
+...+...|++++|..+++++.+. +..| ...++..+...+...|++++|...++++.+.. ..+
T Consensus 159 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 238 (311)
T 3nf1_A 159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK 238 (311)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchH
Confidence 555555555555555555555432 1011 12345555555666666666666665554310 000
Q ss_pred ----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043144 500 ----NVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSR 565 (580)
Q Consensus 500 ----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (580)
....+..+...+...+.+.+|...++...... +....++..++.+|...|++++|.++++++.+.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 239 PIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp CHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 11122223333344555556666666665431 334567778888888888888888888887653
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.45 E-value=6.1e-13 Score=125.52 Aligned_cols=246 Identities=13% Similarity=0.059 Sum_probs=154.1
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHhhhC-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc------C
Q 043144 255 DVVTYNVLVNGICKEGRLDEAIKFLNDMPSY-------GCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLK------G 321 (580)
Q Consensus 255 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~ 321 (580)
+..++..+...+...|++++|..+|+++.+. ..+.....+..+...+...|++++|...++++++. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567888999999999999999999998762 22344567888899999999999999999998864 2
Q ss_pred C-CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC------CC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 043144 322 C-SPSVVTFNILINFLCRKGLLGRAIDILEKMPKH------GC-TPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSR--- 390 (580)
Q Consensus 322 ~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--- 390 (580)
. +.....+..+...|...|++++|...++++.+. +. +.....+..+...+...|++++|+.+++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 223567888999999999999999999988764 11 113345666777777888888888888777653
Q ss_pred ---CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 043144 391 ---GCYPD-IVTYNTLLTALCKDGKVDVAVEILNQLSNKH-------CSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRT 459 (580)
Q Consensus 391 ---~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 459 (580)
+..|. ..++..+..+|...|++++|...++++.+.. ..+.......
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~----------------------- 242 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM----------------------- 242 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH-----------------------
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH-----------------------
Confidence 11222 2355666666666666666666666665421 0000000000
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043144 460 KGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVT 529 (580)
Q Consensus 460 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 529 (580)
....+..+...+...+.+.++...+....... ..+..++..++.+|...|++++|.+.++++++
T Consensus 243 -----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 243 -----HAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -----HHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -----HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 01112222223334455555555665555432 12455677777788888888888888877764
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.44 E-value=2.3e-11 Score=118.30 Aligned_cols=230 Identities=8% Similarity=-0.052 Sum_probs=153.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCC-CC----CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---C--CC-CHHHHH
Q 043144 332 LINFLCRKGLLGRAIDILEKMPKHGC-TP----NSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRG---C--YP-DIVTYN 400 (580)
Q Consensus 332 l~~~~~~~g~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~--~~-~~~~~~ 400 (580)
....+...|++++|...|++..+... .+ ...++..+...|...|+++.|+..+++..+.. . .+ ...++.
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34455677788888877777665311 01 23456667777778888888888877765421 0 11 133667
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCC----CC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 043144 401 TLLTALCKDGKVDVAVEILNQLSNKH----CS-PVLITYNTVIDGLSKVGKTEQAMKLLEEMRT-----KGLKPDTITYS 470 (580)
Q Consensus 401 ~li~~~~~~g~~~~A~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~ 470 (580)
.+..+|...|++++|...|++..+.. .+ ....++..+...|...|++++|...+++..+ .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 77788888888888888887765421 11 1134567778888888888888888888776 32 22356777
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhCCC---CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043144 471 SLVGGLSREGKVDEAIKLFHDLERLGV---RPN-VITYNSIMLGLCKARQ---TYRAIDILADMVTRSCKPTEATYTILI 543 (580)
Q Consensus 471 ~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~ 543 (580)
.+...+.+.|++++|...+++..+... .|. ...+..+...|...++ +.+|+..+++.. ..+.....+..++
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~--~~~~~~~~~~~la 343 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN--LHAYIEACARSAA 343 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC--ChhHHHHHHHHHH
Confidence 888888888999999998888865321 122 3345666666767777 777777776621 1122345667788
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 043144 544 EGIAYEGLAKEALDLLNQLCS 564 (580)
Q Consensus 544 ~~~~~~g~~~~A~~~~~~~~~ 564 (580)
..|...|++++|.+.++++.+
T Consensus 344 ~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 344 AVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 888999999999999888765
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.43 E-value=8.2e-11 Score=114.17 Aligned_cols=267 Identities=13% Similarity=0.053 Sum_probs=165.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCChh----hHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCC----HHHHH
Q 043144 88 NNHLRRLVRNGELEEGFKFLESMVYHGDIPDII----PCTSLIRGFCKVGKTRKATRVMEIVEDSGA-VPD----VITYN 158 (580)
Q Consensus 88 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~ 158 (580)
......+...|++++|...+++++......+.. +++.+...+...|++++|...+++...... ..+ ..++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 344556778899999999999988864333322 456677788889999999999988765321 112 23356
Q ss_pred HHHHHHHhcCChhHHHHHHHHc-------CCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC----ChhhH
Q 043144 159 VLISGYCRLGEIDNALQVLERM-------SVA--P-DVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYP----DVITY 224 (580)
Q Consensus 159 ~l~~~~~~~g~~~~A~~~~~~~-------~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~ 224 (580)
.++..+...|++++|...+++. +.+ | ...++..+...+...|++++|...+++.+...... ...++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 6778888899999998888876 111 1 13356667788888888888888888877643211 12356
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC-HhHHH-----HHHHHHHhcCCHHHHHHHHHHhhhCCCCC---CHHHHH
Q 043144 225 TILIEATCKESGVGQAMKLLDEMRNKGCIPD-VVTYN-----VLVNGICKEGRLDEAIKFLNDMPSYGCQP---NVITHN 295 (580)
Q Consensus 225 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~ 295 (580)
..+...+...|++++|...+++.......++ ...+. ..+..+...|++++|...+++.......+ ....+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 6667777778888888888877764311111 11121 22334667788888888777766532111 122345
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc----CCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 043144 296 IILRSMCSTGRWMDAERLLAEMVLK----GCSPSV-VTFNILINFLCRKGLLGRAIDILEKMPK 354 (580)
Q Consensus 296 ~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 354 (580)
.+...+...|++++|...++..... |..++. ..+..+..++...|+.++|...+++...
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5566666677777777766665432 111111 1344445555566666666666655543
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.42 E-value=8.8e-11 Score=113.93 Aligned_cols=302 Identities=14% Similarity=0.068 Sum_probs=205.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCh----hhH
Q 043144 259 YNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVI----THNIILRSMCSTGRWMDAERLLAEMVLKGC-SPSV----VTF 329 (580)
Q Consensus 259 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~ 329 (580)
.......+...|++++|...+++.....-..+.. .+..+...+...|++++|...+++...... ..+. .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 4445567778999999999999877653222222 455666778889999999999988876411 1122 235
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhC----CCC--C-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--C--CHHH
Q 043144 330 NILINFLCRKGLLGRAIDILEKMPKH----GCT--P-NSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCY--P--DIVT 398 (580)
Q Consensus 330 ~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~--~~~~ 398 (580)
..+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++....... + ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 66778888999999999999887653 211 2 2345566778888999999999999988764322 1 2346
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHH-----HHHHHHHhCCCHHHHHHHHHHHHHCCCCC---CHHHH
Q 043144 399 YNTLLTALCKDGKVDVAVEILNQLSNKHCSPV-LITYN-----TVIDGLSKVGKTEQAMKLLEEMRTKGLKP---DTITY 469 (580)
Q Consensus 399 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~-----~l~~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~ 469 (580)
+..+...+...|++++|...+++.......++ ...+. ..+..+...|++++|...+++.......+ ....+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 77788888999999999999988765321111 11222 23344678899999999998876543211 13356
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043144 470 SSLVGGLSREGKVDEAIKLFHDLERL----GVRPNV-ITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIE 544 (580)
Q Consensus 470 ~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 544 (580)
..+...+...|++++|...++++... +..++. ..+..+..++...|++++|...+++..... +. .....
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--~~----~g~~~ 330 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA--NR----TGFIS 330 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HH----HCCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh--cc----ccHHH
Confidence 67778888999999999999887532 211222 356677788888999999999999988652 11 12334
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCC
Q 043144 545 GIAYEGLAKEALDLLNQLCSRGVV 568 (580)
Q Consensus 545 ~~~~~g~~~~A~~~~~~~~~~g~~ 568 (580)
.+...| +....+++++......
T Consensus 331 ~~~~~g--~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 331 HFVIEG--EAMAQQLRQLIQLNTL 352 (373)
T ss_dssp HHHTTH--HHHHHHHHHHHHTTCS
T ss_pred HHHHcc--HHHHHHHHHHHhCCCC
Confidence 455555 6777888888877653
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.41 E-value=2.1e-11 Score=105.04 Aligned_cols=167 Identities=16% Similarity=0.062 Sum_probs=132.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043144 397 VTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGL 476 (580)
Q Consensus 397 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 476 (580)
..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 356667777778888888888888776654 3456777788888888888888888888887653 44677788888888
Q ss_pred HhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043144 477 SREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEAL 556 (580)
Q Consensus 477 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 556 (580)
...|++++|...++++.+..+. +...+..++.++...|++++|...++++.+.. +.+...+..++.++...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 8888899999888888765433 67788888888888999999999998888764 666788888888999999999999
Q ss_pred HHHHHHHhCCC
Q 043144 557 DLLNQLCSRGV 567 (580)
Q Consensus 557 ~~~~~~~~~g~ 567 (580)
++++++.+..+
T Consensus 165 ~~~~~~~~~~~ 175 (186)
T 3as5_A 165 PHFKKANELDE 175 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHcCC
Confidence 99988877653
No 79
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.41 E-value=1.4e-11 Score=128.09 Aligned_cols=163 Identities=13% Similarity=0.083 Sum_probs=90.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 043144 398 TYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLS 477 (580)
Q Consensus 398 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 477 (580)
+++.+..+|.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..|++.++.. +-+...|..+..++.
T Consensus 11 al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l~ 88 (723)
T 4gyw_A 11 SLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLK 88 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 55555555555555555555555555443 2234455555555555555555555555555442 223455555555666
Q ss_pred hCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 043144 478 REGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALD 557 (580)
Q Consensus 478 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 557 (580)
..|++++|++.|+++.+..+. +...|..++.+|...|++++|++.|+++++.. +.+...+..++.++...|++++|.+
T Consensus 89 ~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A~~ 166 (723)
T 4gyw_A 89 EMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDYDE 166 (723)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHHHH
Confidence 666666666666665554433 45555556666666666666666666655542 3445555566666666666666655
Q ss_pred HHHHHHh
Q 043144 558 LLNQLCS 564 (580)
Q Consensus 558 ~~~~~~~ 564 (580)
.++++.+
T Consensus 167 ~~~kal~ 173 (723)
T 4gyw_A 167 RMKKLVS 173 (723)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
No 80
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.41 E-value=3.1e-11 Score=117.35 Aligned_cols=126 Identities=10% Similarity=0.055 Sum_probs=53.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC----CCCHHHH
Q 043144 364 YNPVLHGFCKEKKMDRAIEYLEIMVS-----RGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHC----SPVLITY 434 (580)
Q Consensus 364 ~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~ 434 (580)
+..+...|...|++++|+..+++..+ ..+. ...++..+..++.+.|++++|...+++..+... +.....+
T Consensus 225 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 303 (378)
T 3q15_A 225 LLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELF 303 (378)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 33344444444444444444444433 2111 123444444445555555555555544433210 1112223
Q ss_pred HHHHHHHHhCCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 043144 435 NTVIDGLSKVGK---TEQAMKLLEEMRTKGLKPD-TITYSSLVGGLSREGKVDEAIKLFHDLE 493 (580)
Q Consensus 435 ~~l~~~~~~~g~---~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 493 (580)
..+...+...|+ +.+|+..+++. +..|+ ...+..+...|...|++++|...|+++.
T Consensus 304 ~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 304 LFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 333344444444 44444444431 11111 2234445555555666666655555553
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.37 E-value=6.3e-11 Score=106.08 Aligned_cols=201 Identities=12% Similarity=0.060 Sum_probs=157.2
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 043144 359 PNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVI 438 (580)
Q Consensus 359 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 438 (580)
.|+..+......+...|++++|+..|++.++....++...+..+..++...|++++|...+++..+.. +.+...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 36788888999999999999999999999987654677777779999999999999999999999876 34567888899
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC---HHHHHHHH
Q 043144 439 DGLSKVGKTEQAMKLLEEMRTKGLKPDT-------ITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPN---VITYNSIM 508 (580)
Q Consensus 439 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~ 508 (580)
.+|...|++++|...+++..+.. +.+. ..|..+...+...|++++|...|+++.+.. |+ ...|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT--SKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS--CHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC--CCcccHHHHHHHH
Confidence 99999999999999999998763 2344 457788888899999999999999998753 43 56777788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCch
Q 043144 509 LGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGVVKKS 571 (580)
Q Consensus 509 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~ 571 (580)
.+|...| ...++++...+ ..+...+.... ....|.+++|...+++..+..+....
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~ 215 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTE 215 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHH
Confidence 7776544 34455555443 34444444433 44567789999999999998765443
No 82
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.36 E-value=3.5e-11 Score=103.64 Aligned_cols=161 Identities=14% Similarity=0.104 Sum_probs=94.1
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043144 86 ESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYC 165 (580)
Q Consensus 86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 165 (580)
.+..+...+...|++++|+..+++++.. .+.+...+..++..+...|++++|...++++.+.. +.+...+..++..+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDA-DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCT-TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh-CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 4455566666667777777777666554 33455566666666666677777776666666554 445556666666666
Q ss_pred hcCChhHHHHHHHHc--CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHH
Q 043144 166 RLGEIDNALQVLERM--SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKL 243 (580)
Q Consensus 166 ~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 243 (580)
..|++++|.+.++++ ..+.+...+..++..+...|++++|...++++.+.. +.+...+..++..+...|++++|...
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666666666655 223344455555555666666666666665555543 22344455555555555555555555
Q ss_pred HHHHHH
Q 043144 244 LDEMRN 249 (580)
Q Consensus 244 ~~~~~~ 249 (580)
++.+.+
T Consensus 167 ~~~~~~ 172 (186)
T 3as5_A 167 FKKANE 172 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.35 E-value=2.1e-10 Score=102.68 Aligned_cols=209 Identities=14% Similarity=0.016 Sum_probs=164.1
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043144 324 PSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLL 403 (580)
Q Consensus 324 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li 403 (580)
.|+..+......+...|++++|...|++..+...+++...+..+..++...|++++|+..+++..+..+. +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 4667888899999999999999999999998865468888888999999999999999999999987433 456899999
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 043144 404 TALCKDGKVDVAVEILNQLSNKHCSPVL-------ITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPD---TITYSSLV 473 (580)
Q Consensus 404 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~l~ 473 (580)
.++...|++++|...+++..+.. +.+. ..|..+...+...|++++|...|++.++. .|+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 99999999999999999998866 2334 45788888899999999999999999875 454 56777777
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043144 474 GGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEG 545 (580)
Q Consensus 474 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 545 (580)
..+... +..+++++...+.. +...|.... ....+.+++|+..+++..+.. |.+..+...+...
T Consensus 161 ~~~~~~-----~~~~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~-p~~~~~~~~l~~i 223 (228)
T 4i17_A 161 VLFYNN-----GADVLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAVTLS-PNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHH-----HHHHHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHHHHH
Confidence 777544 44556666655433 455554443 345677999999999999873 5556665555443
No 84
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.33 E-value=6e-11 Score=123.40 Aligned_cols=166 Identities=13% Similarity=0.057 Sum_probs=120.5
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043144 360 NSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVID 439 (580)
Q Consensus 360 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 439 (580)
+...++.+...|.+.|++++|+..|++.++..+. +..++..+..+|.+.|++++|+..|+++.+.. +.+...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3456777777777777777777777777765322 45577777777777777777777777777655 334667777777
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 043144 440 GLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYR 519 (580)
Q Consensus 440 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 519 (580)
+|...|++++|++.|++.++.. +-+...|..+..++...|++++|+..|+++.+..+. +...+..++.+|...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHH
Confidence 7778888888888888777653 235667778888888888888888888888776544 67777788888888888888
Q ss_pred HHHHHHHHHH
Q 043144 520 AIDILADMVT 529 (580)
Q Consensus 520 A~~~~~~~~~ 529 (580)
|.+.++++++
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8877777653
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.29 E-value=3.5e-11 Score=111.51 Aligned_cols=228 Identities=14% Similarity=0.055 Sum_probs=157.6
Q ss_pred HhcCCHHHHHHHHHHhhhC-------CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCCC-HHHHHHH
Q 043144 337 CRKGLLGRAIDILEKMPKH-------GCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSR------GCYPD-IVTYNTL 402 (580)
Q Consensus 337 ~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~-~~~~~~l 402 (580)
...|++++|+..+++.++. ..+....++..+...|...|++++|+..++++.+. +..|. ..++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3457777777777666542 22234567888889999999999999999998764 22233 3478889
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC------C-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC------CCCC-CHHH
Q 043144 403 LTALCKDGKVDVAVEILNQLSNK------H-CSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTK------GLKP-DTIT 468 (580)
Q Consensus 403 i~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~------~~~p-~~~~ 468 (580)
...|...|++++|...++++... . .+.....+..+...|...|++++|...++++.+. +-.| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999988754 1 1233567888899999999999999999998764 1122 3457
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHH------HHHHHHHcCCCC
Q 043144 469 YSSLVGGLSREGKVDEAIKLFHDLERL-------GVRP-NVITYNSIMLGLCKARQTYRAID------ILADMVTRSCKP 534 (580)
Q Consensus 469 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~-~~~~~~~l~~~~~~~g~~~~A~~------~~~~~~~~~~~~ 534 (580)
+..+...+...|++++|..+++++.+. ...+ ....|..+...+...+....+.. .++.... ..+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 888899999999999999999998653 1111 22344444444444333333222 2221110 1122
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043144 535 TEATYTILIEGIAYEGLAKEALDLLNQLCSR 565 (580)
Q Consensus 535 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (580)
...++..++.+|...|++++|.++++++++.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3457888999999999999999999998764
No 86
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.27 E-value=1.3e-08 Score=101.59 Aligned_cols=388 Identities=10% Similarity=-0.009 Sum_probs=186.8
Q ss_pred HcC-ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hhHH
Q 043144 96 RNG-ELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGE-IDNA 173 (580)
Q Consensus 96 ~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A 173 (580)
+.| +.+.|..+|+.++..- |. |+++.+..+|++.+.. .|++..|...+....+.++ .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 446 3777888888876641 11 8888888888888874 4688888888877777653 3455
Q ss_pred HHHHHHc----CC-CCCcchHHHHHHHHH----hcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHH
Q 043144 174 LQVLERM----SV-APDVVTYNTILRTLC----DSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLL 244 (580)
Q Consensus 174 ~~~~~~~----~~-~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 244 (580)
..+|+.+ |. +.+...|...+..+. ..++.+.+..+|++++.. ++.. +..+ ...|
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~~--~~~l-------------w~~Y 130 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT--PMGS--LSEL-------------WKDF 130 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS--CCTT--HHHH-------------HHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC--hhhh--HHHH-------------HHHH
Confidence 5666654 32 334566666666543 235566777777777763 2111 1111 1111
Q ss_pred HHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcC--C-----hHHHHHHHHHH
Q 043144 245 DEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTG--R-----WMDAERLLAEM 317 (580)
Q Consensus 245 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~-----~~~a~~~~~~~ 317 (580)
..+... .+..+...++.-. .+.+..|..+++++...--..+...|...+.--...+ - .+.+..+|+++
T Consensus 131 ~~fE~~---~~~~~~~~~~~~~--~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~a 205 (493)
T 2uy1_A 131 ENFELE---LNKITGKKIVGDT--LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYI 205 (493)
T ss_dssp HHHHHH---HCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHH---hccccHHHHHHHH--hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHH
Confidence 111110 0111111111111 1122333333333321000012233433333222110 0 12344455555
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 043144 318 VLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIV 397 (580)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 397 (580)
+... +.+...|...+..+.+.|+.+.|..++++.... +.+...|.. |....+.++. ++.+.+.
T Consensus 206 l~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l~~~------- 268 (493)
T 2uy1_A 206 LDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDLKRK------- 268 (493)
T ss_dssp HHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHHHHH-------
T ss_pred HHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHHHHH-------
Confidence 5432 334455555555555556666666666655554 212221111 1111111111 1111110
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 043144 398 TYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLS 477 (580)
Q Consensus 398 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 477 (580)
+.. ...+.+ .. . ........|...+..+.+.+..+.|..+|++. .. ...+...|...+..-.
T Consensus 269 --------~~~-~~~~~~-----~~-~-~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~ 330 (493)
T 2uy1_A 269 --------YSM-GEAESA-----EK-V-FSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEY 330 (493)
T ss_dssp --------TC------------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHH
T ss_pred --------HHh-hccchh-----hh-h-cccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHH
Confidence 000 000000 00 0 00011244555666666667788888888877 32 1234444433222222
Q ss_pred hCC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043144 478 REG-KVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEAL 556 (580)
Q Consensus 478 ~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 556 (580)
..+ +.+.|..+|+...+..+. +...|...+......|+.+.|..+|+++. .....|...+..-...|+.+.+.
T Consensus 331 ~~~~d~~~ar~ife~al~~~~~-~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r 404 (493)
T 2uy1_A 331 YATGSRATPYNIFSSGLLKHPD-STLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFR 404 (493)
T ss_dssp HHHCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHCCChHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHH
Confidence 223 588888888887754322 34555666666677788888888888762 24677777777667778888888
Q ss_pred HHHHHHHh
Q 043144 557 DLLNQLCS 564 (580)
Q Consensus 557 ~~~~~~~~ 564 (580)
+++++..+
T Consensus 405 ~v~~~~~~ 412 (493)
T 2uy1_A 405 ELVDQKMD 412 (493)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87777764
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.24 E-value=1.3e-10 Score=107.70 Aligned_cols=229 Identities=14% Similarity=0.016 Sum_probs=160.1
Q ss_pred HHhcCChHHHHHHHHHHHHc-------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC------CC-CCCHhhHHH
Q 043144 301 MCSTGRWMDAERLLAEMVLK-------GCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKH------GC-TPNSLSYNP 366 (580)
Q Consensus 301 ~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~ 366 (580)
....|++++|..++++.++. ..+....++..+...|...|++++|...++++.+. +. +....++..
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 34568888888888877652 22334567888999999999999999999998764 11 223567888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhC------C-CCCCHH
Q 043144 367 VLHGFCKEKKMDRAIEYLEIMVSR------GCYPD-IVTYNTLLTALCKDGKVDVAVEILNQLSNK------H-CSPVLI 432 (580)
Q Consensus 367 l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~ 432 (580)
+...|...|++++|...+++..+. ...|+ ..++..+...+...|++++|...++++.+. . .+....
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 899999999999999999998764 11233 458889999999999999999999998764 1 122356
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHC-------CCCC-CHHHHHHHHHHHHhCCC------HHHHHHHHHHHHhCCCC
Q 043144 433 TYNTVIDGLSKVGKTEQAMKLLEEMRTK-------GLKP-DTITYSSLVGGLSREGK------VDEAIKLFHDLERLGVR 498 (580)
Q Consensus 433 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~-------~~~p-~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~~~~ 498 (580)
++..+...|...|++++|..+++++.+. ...+ ....+..+...+...+. +.++...++..... ..
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 249 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SP 249 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CH
Confidence 7888999999999999999999998753 1122 22234444434433333 22232222222111 11
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043144 499 PNVITYNSIMLGLCKARQTYRAIDILADMVTR 530 (580)
Q Consensus 499 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 530 (580)
....++..++.+|...|++++|..+++++++.
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 23557888999999999999999999998753
No 88
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.22 E-value=1.7e-08 Score=100.70 Aligned_cols=210 Identities=9% Similarity=-0.088 Sum_probs=127.6
Q ss_pred ccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC-hHHHHHHHHHHHhC-CC-CCCHHHHHHHH
Q 043144 85 FESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGK-TRKATRVMEIVEDS-GA-VPDVITYNVLI 161 (580)
Q Consensus 85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~-~~-~~~~~~~~~l~ 161 (580)
..|...+..+-. |+++.+..+|++++.. .|+..+|...+....+.++ .+....+|+..... |. +.+...|...+
T Consensus 16 ~vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi 92 (493)
T 2uy1_A 16 AIMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYI 92 (493)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHH
T ss_pred HHHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence 355555555554 8999999999999885 4688899999988777764 45677888887763 32 45778898888
Q ss_pred HHHHh----cCChhHHHHHHHHc-CCCCCc--chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 043144 162 SGYCR----LGEIDNALQVLERM-SVAPDV--VTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKE 234 (580)
Q Consensus 162 ~~~~~----~g~~~~A~~~~~~~-~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 234 (580)
..+.. .|+.+.+..+|+++ .+|+.. ..|......- +......+..++.+ . .
T Consensus 93 ~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE-~~~~~~~~~~~~~~-------------------~--~ 150 (493)
T 2uy1_A 93 EEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFE-LELNKITGKKIVGD-------------------T--L 150 (493)
T ss_dssp HHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHH-HHHCHHHHHHHHHH-------------------H--H
T ss_pred HHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHH-HHhccccHHHHHHH-------------------H--h
Confidence 87643 46788899999998 543321 1222222111 11111222222211 1 1
Q ss_pred CCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcC--C-----HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCh
Q 043144 235 SGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEG--R-----LDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRW 307 (580)
Q Consensus 235 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~-----~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 307 (580)
+.+..|..+++.+...-...+...|...+..-...+ - .+.+..+|+++.... +.+...|...+..+...|+.
T Consensus 151 ~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~ 229 (493)
T 2uy1_A 151 PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQK 229 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCH
Confidence 234445555554443100113446666555432221 1 234667888877643 45677788888888888899
Q ss_pred HHHHHHHHHHHHc
Q 043144 308 MDAERLLAEMVLK 320 (580)
Q Consensus 308 ~~a~~~~~~~~~~ 320 (580)
+.|..+++..+..
T Consensus 230 ~~ar~i~erAi~~ 242 (493)
T 2uy1_A 230 EKAKKVVERGIEM 242 (493)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC
Confidence 9999999988877
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.21 E-value=4.4e-10 Score=104.67 Aligned_cols=157 Identities=11% Similarity=-0.044 Sum_probs=77.8
Q ss_pred HHHhcCChHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHc-CCC---CC----cchHHHHHH
Q 043144 128 GFCKVGKTRKATRVMEIVEDS----GAVPD-VITYNVLISGYCRLGEIDNALQVLERM-SVA---PD----VVTYNTILR 194 (580)
Q Consensus 128 ~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~---~~----~~~~~~l~~ 194 (580)
.|...|++++|...|.+.... +.+++ ..+|+.++.+|...|++++|+..|++. ... .+ ..+++.++.
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666666666666655432 21111 345666666666666666666666654 100 11 234555555
Q ss_pred HHHhc-CChhHHHHHHHHHHhCCCCC-C----hhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHh------HHHHH
Q 043144 195 TLCDS-GKLNLAMEVLHKQLEKECYP-D----VITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVV------TYNVL 262 (580)
Q Consensus 195 ~~~~~-g~~~~A~~~~~~~~~~~~~~-~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~l 262 (580)
+|... |++++|+..|++.++..... + ..++..+...+.+.|++++|+..|++..+........ .|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 55554 66666666665555431100 0 2234445555555555555555555555432211110 33444
Q ss_pred HHHHHhcCCHHHHHHHHHHhhh
Q 043144 263 VNGICKEGRLDEAIKFLNDMPS 284 (580)
Q Consensus 263 ~~~~~~~g~~~~A~~~~~~~~~ 284 (580)
..++...|++++|+..|++..+
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 4455555555555555555443
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.20 E-value=5.3e-10 Score=104.16 Aligned_cols=197 Identities=11% Similarity=-0.024 Sum_probs=149.8
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHHhC----CCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC---CC--CHH
Q 043144 86 ESNNHLRRLVRNGELEEGFKFLESMVYH----GDIPD-IIPCTSLIRGFCKVGKTRKATRVMEIVEDSGA---VP--DVI 155 (580)
Q Consensus 86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~--~~~ 155 (580)
.+......|...|++++|+..|++++.. |.+++ ..+++.+..+|.+.|++++|+..|++..+... .+ ...
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 118 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5667778899999999999999998654 32222 46889999999999999999999998876421 11 145
Q ss_pred HHHHHHHHHHhc-CChhHHHHHHHHc-CCCC---C----cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh----
Q 043144 156 TYNVLISGYCRL-GEIDNALQVLERM-SVAP---D----VVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVI---- 222 (580)
Q Consensus 156 ~~~~l~~~~~~~-g~~~~A~~~~~~~-~~~~---~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---- 222 (580)
+++.++.+|... |++++|+..|++. ...| + ..++..++..+.+.|++++|+..|+++.+........
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 198 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 788899999996 9999999999987 2111 1 3468899999999999999999999999875433221
Q ss_pred --hHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCH------hHHHHHHHHHH--hcCCHHHHHHHHHHhhh
Q 043144 223 --TYTILIEATCKESGVGQAMKLLDEMRNKGCIPDV------VTYNVLVNGIC--KEGRLDEAIKFLNDMPS 284 (580)
Q Consensus 223 --~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~--~~g~~~~A~~~~~~~~~ 284 (580)
.+..+..++...|++++|...|++..+.. |+. ..+..++..+. ..+++++|+..|+++..
T Consensus 199 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 199 KDYFLKKGLCQLAATDAVAAARTLQEGQSED--PNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 56778888999999999999999987652 221 12344555554 45678899998888764
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.19 E-value=1.3e-09 Score=87.99 Aligned_cols=131 Identities=14% Similarity=0.172 Sum_probs=97.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043144 433 TYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLC 512 (580)
Q Consensus 433 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 512 (580)
.|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|..+++++.+..+. +...+..++..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHH
Confidence 45566677777778888888887776653 335666777777777888888888888887765433 5667777788888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043144 513 KARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRG 566 (580)
Q Consensus 513 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 566 (580)
..|++++|.+.++++.+.. +.+...+..++.++...|++++|.+.++++.+.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 8888888888888887663 5567777888888888888888888888877654
No 92
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.19 E-value=5.8e-09 Score=95.02 Aligned_cols=243 Identities=10% Similarity=0.038 Sum_probs=145.1
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 043144 264 NGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLG 343 (580)
Q Consensus 264 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 343 (580)
+-..-.|.+..++.-..++... .......-+.+++...|++... ....|....+..+...+ ..+
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~~---~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSKV---TDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSCC---CCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT---
T ss_pred HHHHHhhHHHHHHHHHHhcCcc---chHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc---
Confidence 4445578888888754444321 1223334455777777776642 11123333333333333 222
Q ss_pred HHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 043144 344 RAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYP-DIVTYNTLLTALCKDGKVDVAVEILNQL 422 (580)
Q Consensus 344 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 422 (580)
++..|++..+.+ .++..++..+..++...|++++|++++.+.+..+..+ +...+..++..+.+.|+.+.|.+.++.|
T Consensus 85 -a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 -NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp -CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 667777776654 3355555677777888888888888888776654322 4457777778888888888888888888
Q ss_pred HhCCCCC-----CHHHHHHHHHH--HHhCC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 043144 423 SNKHCSP-----VLITYNTVIDG--LSKVG--KTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLE 493 (580)
Q Consensus 423 ~~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 493 (580)
.+.. | +..+...++.+ ....| ++++|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.
T Consensus 163 ~~~~--~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 163 TNAI--EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHHS--CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HhcC--ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7654 4 23444445444 22233 778888888887654 3443333334447777888888888887654
Q ss_pred hCCC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043144 494 RLGV---------RPNVITYNSIMLGLCKARQTYRAIDILADMVTR 530 (580)
Q Consensus 494 ~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 530 (580)
+..+ ..|+.++..++......|+ +|.+++.++.+.
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 3210 1245566455555555665 677777777765
No 93
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.16 E-value=6e-10 Score=97.94 Aligned_cols=110 Identities=11% Similarity=0.047 Sum_probs=61.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHH----------------HHHHHHhcCChHHHHHHHHHHHhCCC
Q 043144 87 SNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTS----------------LIRGFCKVGKTRKATRVMEIVEDSGA 150 (580)
Q Consensus 87 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~A~~~~~~~~~~~~ 150 (580)
+......+...|++++|+..|++++.. .|.+...|.. +..+|.+.|++++|...|++..+..
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~- 84 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIAL-NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA- 84 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-
Confidence 344556777888888888888888775 2333444544 5555555555555555555555544
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHc-C-CCCCcchHHHHHHHHHh
Q 043144 151 VPDVITYNVLISGYCRLGEIDNALQVLERM-S-VAPDVVTYNTILRTLCD 198 (580)
Q Consensus 151 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~ 198 (580)
|.++..+..++.+|...|++++|+..|+++ . .|.+..+|..++.+|..
T Consensus 85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYL 134 (208)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 344555555555555555555555555554 1 12234445555554443
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.16 E-value=9.6e-10 Score=100.61 Aligned_cols=95 Identities=9% Similarity=0.050 Sum_probs=75.2
Q ss_pred ccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCCHHHHHH
Q 043144 85 FESNNHLRRLVRNGELEEGFKFLESMVYHGDIPD---IIPCTSLIRGFCKVGKTRKATRVMEIVEDSGA--VPDVITYNV 159 (580)
Q Consensus 85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~ 159 (580)
..+..+...+.+.|++++|+..|++++... |.+ ...+..++.+|.+.|++++|...|+++.+..+ +.....+..
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 356677788889999999999999998763 333 56788888889999999999999999888642 123456777
Q ss_pred HHHHHHh--------cCChhHHHHHHHHc
Q 043144 160 LISGYCR--------LGEIDNALQVLERM 180 (580)
Q Consensus 160 l~~~~~~--------~g~~~~A~~~~~~~ 180 (580)
++.++.. .|++++|+..|+++
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~ 123 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLF 123 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHH
Confidence 8888888 88899999998887
No 95
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.15 E-value=1e-08 Score=93.45 Aligned_cols=12 Identities=8% Similarity=-0.006 Sum_probs=5.2
Q ss_pred HHhcCChHHHHH
Q 043144 129 FCKVGKTRKATR 140 (580)
Q Consensus 129 ~~~~g~~~~A~~ 140 (580)
..-.|++..++.
T Consensus 23 ~fy~G~yq~~i~ 34 (310)
T 3mv2_B 23 NYYTGNFVQCLQ 34 (310)
T ss_dssp HHTTTCHHHHTH
T ss_pred HHHhhHHHHHHH
Confidence 334444444444
No 96
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.15 E-value=1.5e-09 Score=99.39 Aligned_cols=185 Identities=12% Similarity=-0.021 Sum_probs=117.5
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHc-CCCC---C-cc
Q 043144 116 IPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPD---VITYNVLISGYCRLGEIDNALQVLERM-SVAP---D-VV 187 (580)
Q Consensus 116 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~---~-~~ 187 (580)
+.+...+...+..+.+.|++++|...|+.+.+.. |.+ ...+..++.+|.+.|++++|+..|+++ ...| . ..
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 4456677788888899999999999999998875 334 677888899999999999999999987 2222 2 34
Q ss_pred hHHHHHHHHHh--------cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHH
Q 043144 188 TYNTILRTLCD--------SGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTY 259 (580)
Q Consensus 188 ~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 259 (580)
++..++.++.. .|++++|+..|+++++..+. +......+ ..+..+... -...+
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~--------------~~~~~~~~~----~~~~~ 151 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDAT--------------QKIRELRAK----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHH--------------HHHHHHHHH----HHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHH--------------HHHHHHHHH----HHHHH
Confidence 67788888888 89999999999988876421 22222111 001111000 01123
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCC--CCHHHHHHHHHHHHhc----------CChHHHHHHHHHHHHc
Q 043144 260 NVLVNGICKEGRLDEAIKFLNDMPSYGCQ--PNVITHNIILRSMCST----------GRWMDAERLLAEMVLK 320 (580)
Q Consensus 260 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~~ 320 (580)
..+...|.+.|++++|+..|+++.+.... .....+..+..++... |++++|...|+.+++.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 44555666666666666666666543210 1233455555555544 6666666666666654
No 97
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.14 E-value=2.7e-08 Score=91.71 Aligned_cols=217 Identities=10% Similarity=0.006 Sum_probs=116.3
Q ss_pred HHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----Hhc---CChH
Q 043144 343 GRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEK--KMDRAIEYLEIMVSRGCYPDIVTYNTLLTAL----CKD---GKVD 413 (580)
Q Consensus 343 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~----~~~---g~~~ 413 (580)
++|+.+++.++..++. +...|+.-...+...+ ++++++..++.++...++ +..+|+.-...+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHH
Confidence 3555555555554332 3344444444555555 555555555555554332 222333322222 333 4556
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC------HHHH
Q 043144 414 VAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTE--QAMKLLEEMRTKGLKPDTITYSSLVGGLSREGK------VDEA 485 (580)
Q Consensus 414 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~------~~~A 485 (580)
+++.+++.+.+.+ +.+..+|+.-...+.+.|.++ +++++++++++.+ .-|...|+.-...+...|. ++++
T Consensus 128 ~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 128 REFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHH
Confidence 6666666665544 344555555555555555555 6666666666554 2255555555555555554 6666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043144 486 IKLFHDLERLGVRPNVITYNSIMLGLCKARQTYR-AIDILADMVTRS--CKPTEATYTILIEGIAYEGLAKEALDLLNQL 562 (580)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (580)
++.+++++...+. |...|+.+...+.+.|+... +..+..++.+.+ -+.+...+..++.+|.+.|+.++|.++++.+
T Consensus 206 l~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 206 LNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 6666666655544 66666666666666665333 334444444321 1345566666666666667777777777776
Q ss_pred Hh
Q 043144 563 CS 564 (580)
Q Consensus 563 ~~ 564 (580)
.+
T Consensus 285 ~~ 286 (306)
T 3dra_A 285 KS 286 (306)
T ss_dssp HH
T ss_pred Hh
Confidence 65
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.14 E-value=6.9e-10 Score=116.11 Aligned_cols=183 Identities=11% Similarity=0.001 Sum_probs=139.2
Q ss_pred HHcCChHHHHHHHHHHH--------hCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 043144 95 VRNGELEEGFKFLESMV--------YHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCR 166 (580)
Q Consensus 95 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 166 (580)
...|++++|++.+++++ .. .+.+...+..+..++...|++++|...|+++.+.. +.+...|..++.+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67889999999999988 33 45566788888888999999999999999888876 6678888888999999
Q ss_pred cCChhHHHHHHHHc-C-CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHH
Q 043144 167 LGEIDNALQVLERM-S-VAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLL 244 (580)
Q Consensus 167 ~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 244 (580)
.|++++|++.|+++ . .+.+...|..++.++.+.|++++ ++.|+++++.+ +.+...|..+..++.+.|++++|...|
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999887 2 34467788888888889999988 88888888765 235677888888888888888888888
Q ss_pred HHHHHcCCCCCHhHHHHHHHHHHhcCC--------HHHHHHHHHHh
Q 043144 245 DEMRNKGCIPDVVTYNVLVNGICKEGR--------LDEAIKFLNDM 282 (580)
Q Consensus 245 ~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~~ 282 (580)
+++.+.+. .+...+..+..++...++ +++|.+.+..+
T Consensus 558 ~~al~l~P-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 558 DEVPPTSR-HFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HTSCTTST-THHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred HhhcccCc-ccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 88876532 135667677777655443 44555555444
No 99
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.13 E-value=1.6e-09 Score=87.40 Aligned_cols=128 Identities=15% Similarity=0.193 Sum_probs=80.4
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043144 86 ESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYC 165 (580)
Q Consensus 86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 165 (580)
.+..+...+...|++++|+.+|++++.. .+.+...+..++..+...|++++|..+++++.... +.+...+..++..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL-DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc-CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 3555666677777777777777777655 23455566666666777777777777777766654 445556666666666
Q ss_pred hcCChhHHHHHHHHc--CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043144 166 RLGEIDNALQVLERM--SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEK 215 (580)
Q Consensus 166 ~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 215 (580)
..|++++|...++++ ..+.+..++..++..+.+.|++++|...++++...
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 666776666666665 12234455556666666666666666666665543
No 100
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.12 E-value=2.4e-09 Score=94.05 Aligned_cols=182 Identities=9% Similarity=-0.017 Sum_probs=95.6
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043144 361 SLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIV-TYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVID 439 (580)
Q Consensus 361 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 439 (580)
...+......+...|++++|+..|++.++. .|+.. .+... ..... ..........+..
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~-----~~~~~--------------~~~~~~~~~~lg~ 62 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWT-----NVDKN--------------SEISSKLATELAL 62 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHH-----HSCTT--------------SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHh-----hhcch--------------hhhhHHHHHHHHH
Confidence 334445556677788888888888888765 33322 33330 00000 0001112233555
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--H
Q 043144 440 GLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQ--T 517 (580)
Q Consensus 440 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~ 517 (580)
+|...|++++|...|++.++.. +-+...+..+...+...|++++|...|+++.+..+. +...|..+..+|...|+ .
T Consensus 63 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~ 140 (208)
T 3urz_A 63 AYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEK 140 (208)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHH
Confidence 6666666666666666666543 234556666666666666666666666666655433 55566666666554433 2
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 043144 518 YRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGV 567 (580)
Q Consensus 518 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 567 (580)
+.+...++.... ..|....+..+..++...|++++|...|+++++..+
T Consensus 141 ~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P 188 (208)
T 3urz_A 141 KKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFP 188 (208)
T ss_dssp HHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 333444444321 122222344445555566666666666666666544
No 101
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.12 E-value=2.9e-09 Score=93.74 Aligned_cols=176 Identities=15% Similarity=0.019 Sum_probs=116.4
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----ChhHHHHHH
Q 043144 102 EGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLG----EIDNALQVL 177 (580)
Q Consensus 102 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~ 177 (580)
+|++.|+++.+.| +...+..+...|...+++++|..+|++..+.+ ++..+..|...|.. + ++++|+.+|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 5777777777764 66677777778888888888888888887765 56667777777776 5 777888887
Q ss_pred HHcCCCCCcchHHHHHHHHHh----cCChhHHHHHHHHHHhCCCC-CChhhHHHHHHHHHh----cCCHhHHHHHHHHHH
Q 043144 178 ERMSVAPDVVTYNTILRTLCD----SGKLNLAMEVLHKQLEKECY-PDVITYTILIEATCK----ESGVGQAMKLLDEMR 248 (580)
Q Consensus 178 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~ 248 (580)
++.-...+..++..|...|.. .+++++|+..|++..+.+.. .+...+..|...|.. .+++++|...|+...
T Consensus 77 ~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 77 EKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 777223456667777777766 66777777777777765511 015566666666666 566777777777666
Q ss_pred HcCCCCCHhHHHHHHHHHHhc-C-----CHHHHHHHHHHhhhCC
Q 043144 249 NKGCIPDVVTYNVLVNGICKE-G-----RLDEAIKFLNDMPSYG 286 (580)
Q Consensus 249 ~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~ 286 (580)
+. ..+...+..|...|... | +.++|..+|++..+.|
T Consensus 157 ~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 157 SL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred Hc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 55 12344555566655542 2 5666666666665544
No 102
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.11 E-value=8.4e-08 Score=88.40 Aligned_cols=231 Identities=9% Similarity=-0.003 Sum_probs=140.5
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHhhhCCCCCCHhhHHHHHHHH----Hhc---CCHH
Q 043144 308 MDAERLLAEMVLKGCSPSVVTFNILINFLCRKG--LLGRAIDILEKMPKHGCTPNSLSYNPVLHGF----CKE---KKMD 378 (580)
Q Consensus 308 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~~ 378 (580)
++|+.+++.++..+ +.+..+|+.-...+...| +++++++.++.++...+. +..+|+.-...+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHH
Confidence 45566666555543 233445555555555555 666666666666655333 444444443333 333 5566
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC------HHHH
Q 043144 379 RAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVD--VAVEILNQLSNKHCSPVLITYNTVIDGLSKVGK------TEQA 450 (580)
Q Consensus 379 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A 450 (580)
+++.+++++++..++ +..+|+.-.-++.+.|.++ +++++++.+.+.+ +.+...|+.-...+...|. ++++
T Consensus 128 ~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 128 REFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHH
Confidence 677777766665433 5556666666666666666 6777777766655 3455566665555555555 7788
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH-HHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043144 451 MKLLEEMRTKGLKPDTITYSSLVGGLSREGKV-DEAIKLFHDLERLG--VRPNVITYNSIMLGLCKARQTYRAIDILADM 527 (580)
Q Consensus 451 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 527 (580)
++.+++++... +-|...|+.+...+.+.|+. +++..+..++.+.+ -..+...+..++.+|.+.|+.++|.++++.+
T Consensus 206 l~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 206 LNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 88888887764 34677787777777777763 33445666554432 1236777888888888888888888888888
Q ss_pred HHcCCCCCHHHHHHHH
Q 043144 528 VTRSCKPTEATYTILI 543 (580)
Q Consensus 528 ~~~~~~~~~~~~~~l~ 543 (580)
.+.--|.....|...+
T Consensus 285 ~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 285 KSKYNPIRSNFWDYQI 300 (306)
T ss_dssp HHTTCGGGHHHHHHHH
T ss_pred HhccChHHHHHHHHHH
Confidence 7642244455555443
No 103
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.10 E-value=1.3e-09 Score=113.95 Aligned_cols=172 Identities=10% Similarity=0.019 Sum_probs=131.9
Q ss_pred HhcCChHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc--CCCCCcchHHHHHHHHHhc
Q 043144 130 CKVGKTRKATRVMEIVE--------DSGAVPDVITYNVLISGYCRLGEIDNALQVLERM--SVAPDVVTYNTILRTLCDS 199 (580)
Q Consensus 130 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~ 199 (580)
...|++++|++.+++.. +.. +.+...+..++.+|...|++++|+..|+++ ..+.+...|..++.++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 77888999999998887 443 556778888888888899999999988887 2345667888888888899
Q ss_pred CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 043144 200 GKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFL 279 (580)
Q Consensus 200 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 279 (580)
|++++|++.|+++++.. +.+...+..+..++.+.|++++ +..|+++.+.+.. +...|..+..++.+.|++++|+..|
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999888865 2356778888888888899988 8888888876432 6778888888888899999999998
Q ss_pred HHhhhCCCCCCHHHHHHHHHHHHhcCC
Q 043144 280 NDMPSYGCQPNVITHNIILRSMCSTGR 306 (580)
Q Consensus 280 ~~~~~~~~~~~~~~~~~ll~~~~~~~~ 306 (580)
++..+.+ +.+...+..+..++...++
T Consensus 558 ~~al~l~-P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTS-RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred HhhcccC-cccHHHHHHHHHHHHccCC
Confidence 8887653 3335566666666655444
No 104
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.10 E-value=4.7e-10 Score=92.68 Aligned_cols=146 Identities=14% Similarity=0.004 Sum_probs=99.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 043144 402 LLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGK 481 (580)
Q Consensus 402 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 481 (580)
|..++...|++++|+..+....... +.+...+..+...|.+.|++++|.+.|++.++.. +-+..+|..+..++...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCc
Confidence 3444555667777777777765543 1223445567777788888888888888877654 3366777888888888888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 043144 482 VDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDI-LADMVTRSCKPTEATYTILIEGIAYEGL 551 (580)
Q Consensus 482 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 551 (580)
+++|...|+++.+..+. +...|..++.+|...|++++|.+. ++++++.. |.++.+|......+...|+
T Consensus 81 ~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 88888888888776544 677777888888888887765554 57777653 5567777777777776664
No 105
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.10 E-value=1.4e-08 Score=90.40 Aligned_cols=189 Identities=10% Similarity=0.015 Sum_probs=123.9
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHH
Q 043144 360 NSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCY-PD-IVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVL--ITYN 435 (580)
Q Consensus 360 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~ 435 (580)
+...+..+...+...|++++|+..|+++++..+. |. ...+..+..++.+.|++++|+..|+++.+....... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 4455666778888899999999999998875432 21 347778888899999999999999998876522111 2344
Q ss_pred HHHHHHHh------------------CCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 043144 436 TVIDGLSK------------------VGKTEQAMKLLEEMRTKGLKPDT-ITYSSLVGGLSREGKVDEAIKLFHDLERLG 496 (580)
Q Consensus 436 ~l~~~~~~------------------~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 496 (580)
.+..++.. .|++++|...|+++++.. |+. ..+...... ..+....
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l----------~~~~~~~---- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL----------VFLKDRL---- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH----------HHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH----------HHHHHHH----
Confidence 44555443 344555555555555431 221 111110000 0000000
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 043144 497 VRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTE---ATYTILIEGIAYEGLAKEALDLLNQLCSRGVVK 569 (580)
Q Consensus 497 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~ 569 (580)
......++..|...|++++|+..++++++.. |.++ ..+..++.++.+.|++++|.+.++++...++..
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 0112356778899999999999999999862 3333 578899999999999999999999999887654
No 106
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.09 E-value=1.1e-09 Score=93.40 Aligned_cols=159 Identities=9% Similarity=-0.002 Sum_probs=83.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HH
Q 043144 87 SNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISG-YC 165 (580)
Q Consensus 87 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 165 (580)
+..+...+.+.|++++|+..|++++.. .|.+...+..+..++...|++++|...|+++.... | ++..+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~-~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~-p-~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDE-LQSRGDVKLAKADCLLETKQFELAQELLATIPLEY-Q-DNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHH-HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG-C-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc-C-ChHHHHHHHHHHHH
Confidence 445556666666666666666666554 33455566666666666666666666666665543 2 44333222211 11
Q ss_pred hcCChhHHHHHHHHc-C-CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHhHHHH
Q 043144 166 RLGEIDNALQVLERM-S-VAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYP-DVITYTILIEATCKESGVGQAMK 242 (580)
Q Consensus 166 ~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~ 242 (580)
..++..+|+..+++. . .|.+...+..++.++...|++++|...|+++++..+.+ +...+..+...+...|+.++|..
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 222223345555554 1 22334555555556666666666666666555544221 23345555555555555555555
Q ss_pred HHHHHH
Q 043144 243 LLDEMR 248 (580)
Q Consensus 243 ~~~~~~ 248 (580)
.|++.+
T Consensus 166 ~y~~al 171 (176)
T 2r5s_A 166 KYRRQL 171 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 107
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.08 E-value=1.5e-09 Score=92.55 Aligned_cols=160 Identities=11% Similarity=0.012 Sum_probs=91.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc-CCCCCcchHHHHHHH-HHh
Q 043144 121 PCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM-SVAPDVVTYNTILRT-LCD 198 (580)
Q Consensus 121 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~-~~~ 198 (580)
.+......+...|++++|...|++..+.. |.+...+..++.++...|++++|+..|+++ ...|+...+..+... +..
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHh
Confidence 45556667777888888888887776654 556777777788888888888888888776 323333222222211 112
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhcCCHHHHHH
Q 043144 199 SGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIP-DVVTYNVLVNGICKEGRLDEAIK 277 (580)
Q Consensus 199 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~ 277 (580)
.+....|+..+++.++.. +.+...+..+...+...|++++|...|+++.+..+.+ +...+..+..++...|+.++|..
T Consensus 87 ~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 87 QAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 222334555566555543 1234555555566666666666666666655543221 23355555556666666666665
Q ss_pred HHHHh
Q 043144 278 FLNDM 282 (580)
Q Consensus 278 ~~~~~ 282 (580)
.|++.
T Consensus 166 ~y~~a 170 (176)
T 2r5s_A 166 KYRRQ 170 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 108
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.07 E-value=6.6e-09 Score=91.47 Aligned_cols=176 Identities=13% Similarity=0.048 Sum_probs=107.4
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcCCCCCcchHHHHHHHHHhcC----ChhHHHHHHHHH
Q 043144 137 KATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERMSVAPDVVTYNTILRTLCDSG----KLNLAMEVLHKQ 212 (580)
Q Consensus 137 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~ 212 (580)
+|.++|++..+.| ++..+..|+..|...+++++|+..|++.-...+..++..|...|.. + ++++|+..|++.
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 4666677666654 5666777777777777777777777776222355666666666666 5 677777777777
Q ss_pred HhCCCCCChhhHHHHHHHHHh----cCCHhHHHHHHHHHHHcCCC-CCHhHHHHHHHHHHh----cCCHHHHHHHHHHhh
Q 043144 213 LEKECYPDVITYTILIEATCK----ESGVGQAMKLLDEMRNKGCI-PDVVTYNVLVNGICK----EGRLDEAIKFLNDMP 283 (580)
Q Consensus 213 ~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~ 283 (580)
.+.+ +...+..+...|.. .+++++|...|++..+.+.. .++..+..|...|.. .+++++|+.+|++..
T Consensus 80 ~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 80 VEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 6654 55566666666655 56667777777666655321 014556666666665 556666666666665
Q ss_pred hCCCCCCHHHHHHHHHHHHhc-C-----ChHHHHHHHHHHHHcC
Q 043144 284 SYGCQPNVITHNIILRSMCST-G-----RWMDAERLLAEMVLKG 321 (580)
Q Consensus 284 ~~~~~~~~~~~~~ll~~~~~~-~-----~~~~a~~~~~~~~~~~ 321 (580)
+. ..+...+..+...|... | ++++|..+|+...+.|
T Consensus 157 ~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 157 SL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred Hc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 54 12333455555555432 2 5666666666666554
No 109
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.07 E-value=4.2e-10 Score=93.01 Aligned_cols=120 Identities=10% Similarity=0.015 Sum_probs=64.9
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 043144 94 LVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNA 173 (580)
Q Consensus 94 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 173 (580)
+...|++++|+..++.+... .+.+...+..+...|.+.|++++|.+.|++.++.. |.++.+|..++.+|...|++++|
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~-~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPS-PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCS-HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcChHHHHHHHHHHhccc-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHH
Confidence 33445566666666665443 22233445555666666666666666666666554 44555666666666666666666
Q ss_pred HHHHHHc-CC-CCCcchHHHHHHHHHhcCChhHHHHH-HHHHHhC
Q 043144 174 LQVLERM-SV-APDVVTYNTILRTLCDSGKLNLAMEV-LHKQLEK 215 (580)
Q Consensus 174 ~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~ 215 (580)
+..|+++ .. |.+..+|..++..|.+.|++++|.+. ++++++.
T Consensus 85 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 85 VECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 6666555 22 22344555555555555555544433 3444443
No 110
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.06 E-value=9.1e-09 Score=91.61 Aligned_cols=183 Identities=10% Similarity=0.005 Sum_probs=122.9
Q ss_pred ccHHHHHHHHHHcCChHHHHHHHHHHHhCCCC-C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH---HHHHH
Q 043144 85 FESNNHLRRLVRNGELEEGFKFLESMVYHGDI-P-DIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDV---ITYNV 159 (580)
Q Consensus 85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~ 159 (580)
..+..+...+.+.|++++|+..|++++...+. + ....+..++.+|.+.|++++|+..|+++.+..+ .+. ..+..
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P-~~~~~~~a~~~ 83 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP-THPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-CCCcHHHHHHH
Confidence 35667788899999999999999999876322 1 135788889999999999999999999988752 232 24555
Q ss_pred HHHHHHh------------------cCChhHHHHHHHHc-CCCCCc-chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 043144 160 LISGYCR------------------LGEIDNALQVLERM-SVAPDV-VTYNTILRTLCDSGKLNLAMEVLHKQLEKECYP 219 (580)
Q Consensus 160 l~~~~~~------------------~g~~~~A~~~~~~~-~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 219 (580)
++.++.. .|++++|+..|+++ ...|+. .++........ +....
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~----------~~~~~------- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVF----------LKDRL------- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHH----------HHHHH-------
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHH----------HHHHH-------
Confidence 6666654 35566666666665 322332 22221111000 00000
Q ss_pred ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 043144 220 DVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPD--VVTYNVLVNGICKEGRLDEAIKFLNDMPSYG 286 (580)
Q Consensus 220 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 286 (580)
......+...|.+.|++++|...|+.+.+..+... ...+..+..+|.+.|+.++|.+.++.+...+
T Consensus 147 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 -AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred -HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 01123466788899999999999999988632211 2467888899999999999999999887763
No 111
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.06 E-value=5.7e-09 Score=107.25 Aligned_cols=165 Identities=12% Similarity=0.007 Sum_probs=118.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 043144 374 EKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKL 453 (580)
Q Consensus 374 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 453 (580)
.|++++|+..+++..+.... +...+..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 47888999999988776332 56788888889999999999999999988876 34577888888899999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHc
Q 043144 454 LEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKA---RQTYRAIDILADMVTR 530 (580)
Q Consensus 454 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 530 (580)
+++..+.. +.+...+..+..++...|++++|.+.++++.+..+. +...+..+..++... |++++|.+.++++++.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99988764 346778888889999999999999999998876544 677888888899888 9999999999998876
Q ss_pred CCCCCHHHHHHHH
Q 043144 531 SCKPTEATYTILI 543 (580)
Q Consensus 531 ~~~~~~~~~~~l~ 543 (580)
+ +.+...|..+.
T Consensus 158 ~-p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 G-VGAVEPFAFLS 169 (568)
T ss_dssp T-CCCSCHHHHTT
T ss_pred C-CcccChHHHhC
Confidence 4 44444454444
No 112
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.06 E-value=5e-09 Score=97.11 Aligned_cols=165 Identities=12% Similarity=-0.021 Sum_probs=105.1
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc-CCCCCcchH-HHHH
Q 043144 116 IPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM-SVAPDVVTY-NTIL 193 (580)
Q Consensus 116 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~-~~l~ 193 (580)
+.+...+..+...+...|++++|...|+++.... |.+...+..++..+.+.|++++|...++++ ...|+.... ....
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 3445566667777777777777777777777665 556677777777777777777777777776 333443322 2222
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhcCCH
Q 043144 194 RTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIP-DVVTYNVLVNGICKEGRL 272 (580)
Q Consensus 194 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~ 272 (580)
..+...++.++|...+++.+... +.+...+..+...+...|++++|...|.++.+..+.. +...+..++..+...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 33555666666777777766654 2355666666777777777777777777766653221 144566666666666766
Q ss_pred HHHHHHHHHh
Q 043144 273 DEAIKFLNDM 282 (580)
Q Consensus 273 ~~A~~~~~~~ 282 (580)
++|...|++.
T Consensus 272 ~~a~~~~r~a 281 (287)
T 3qou_A 272 DALASXYRRQ 281 (287)
T ss_dssp CHHHHHHHHH
T ss_pred CcHHHHHHHH
Confidence 6666666554
No 113
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.01 E-value=7.3e-09 Score=96.01 Aligned_cols=162 Identities=12% Similarity=0.038 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHH
Q 043144 397 VTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYS-SLVGG 475 (580)
Q Consensus 397 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~l~~~ 475 (580)
..+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++... .|+..... .....
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHH
Confidence 345555566666666666666666666554 234555666666666677777777766666543 23333222 22223
Q ss_pred HHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHH
Q 043144 476 LSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPT--EATYTILIEGIAYEGLAK 553 (580)
Q Consensus 476 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~ 553 (580)
+...++.++|...++++....+. +...+..+..+|...|++++|+..++++++.. +.+ ...+..++..+...|+.+
T Consensus 195 l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~-p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXD-LTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-cccccchHHHHHHHHHHHcCCCC
Confidence 45556666677777776665443 56666777777777777777777777777653 222 556777777777777777
Q ss_pred HHHHHHHHHH
Q 043144 554 EALDLLNQLC 563 (580)
Q Consensus 554 ~A~~~~~~~~ 563 (580)
+|...+++..
T Consensus 273 ~a~~~~r~al 282 (287)
T 3qou_A 273 ALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 7777766654
No 114
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.98 E-value=2.4e-08 Score=102.62 Aligned_cols=156 Identities=11% Similarity=-0.059 Sum_probs=113.3
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 043144 339 KGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEI 418 (580)
Q Consensus 339 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 418 (580)
.|++++|...+++..+.... +...+..+...+...|++++|...+++..+.... +...+..+..+|...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 47888999999888876433 6778888888999999999999999998876433 567888888999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC---CCHHHHHHHHHHHHhC
Q 043144 419 LNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSRE---GKVDEAIKLFHDLERL 495 (580)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 495 (580)
+++..+.. +.+...+..+..+|...|++++|.+.|++..+.. +.+...+..+...+... |++++|.+.++++.+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99988765 3457788888899999999999999999988764 34677888888888888 9999999999998876
Q ss_pred CCC
Q 043144 496 GVR 498 (580)
Q Consensus 496 ~~~ 498 (580)
++.
T Consensus 158 ~p~ 160 (568)
T 2vsy_A 158 GVG 160 (568)
T ss_dssp TCC
T ss_pred CCc
Confidence 544
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.97 E-value=1.2e-08 Score=95.74 Aligned_cols=161 Identities=9% Similarity=-0.004 Sum_probs=88.4
Q ss_pred cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 043144 97 NGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQV 176 (580)
Q Consensus 97 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 176 (580)
.|++++|.++++++.+... ... +...|+++.|...|... +..|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~~---------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TSF---------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CCS---------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-ccc---------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 4677888888887765411 110 11146777777777654 4456677777777777
Q ss_pred HHHc-------CCCCC-cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCC---C--ChhhHHHHHHHHHhcCCHhHHHHH
Q 043144 177 LERM-------SVAPD-VVTYNTILRTLCDSGKLNLAMEVLHKQLEKECY---P--DVITYTILIEATCKESGVGQAMKL 243 (580)
Q Consensus 177 ~~~~-------~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~--~~~~~~~li~~~~~~g~~~~A~~~ 243 (580)
|.++ +.++. ..+|+.++.+|.+.|++++|+..|++.+..... + ...++..+...|.. |++++|+..
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 7765 11001 235666667777777777777777666542100 0 12344455555555 666666666
Q ss_pred HHHHHHcCCCC-----CHhHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 043144 244 LDEMRNKGCIP-----DVVTYNVLVNGICKEGRLDEAIKFLNDMP 283 (580)
Q Consensus 244 ~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 283 (580)
|++..+..... ...+++.+...|...|++++|+..|++..
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEK 182 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 65554321000 02344555555555555555555555544
No 116
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.92 E-value=1.6e-08 Score=94.87 Aligned_cols=225 Identities=13% Similarity=0.040 Sum_probs=160.8
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 043144 303 STGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCR-KGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAI 381 (580)
Q Consensus 303 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 381 (580)
..|++++|.+++++..+.. + . .+.. .++++.|...|.++ ...|...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~-~---------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-K-T---------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-C-C---------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-c-c---------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 3567788888888777642 1 1 0222 57777777777654 45678889999999
Q ss_pred HHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCC---CCCC--HHHHHHHHHHHHhCCCHHHHH
Q 043144 382 EYLEIMVSR----GCYPD-IVTYNTLLTALCKDGKVDVAVEILNQLSNKH---CSPV--LITYNTVIDGLSKVGKTEQAM 451 (580)
Q Consensus 382 ~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~--~~~~~~l~~~~~~~g~~~~A~ 451 (580)
..|.+..+. +..+. ..++..+..+|...|++++|...|++..+.. -.+. ..++..+...|.. |++++|+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 999987653 11111 3478889999999999999999999876532 1121 3567888888888 9999999
Q ss_pred HHHHHHHHCCC---CC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 043144 452 KLLEEMRTKGL---KP--DTITYSSLVGGLSREGKVDEAIKLFHDLERL----GVRPN-VITYNSIMLGLCKARQTYRAI 521 (580)
Q Consensus 452 ~~~~~m~~~~~---~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~ 521 (580)
..|++.++... .+ ...++..+...+...|++++|+..|+++.+. +..+. ...+..++.++...|++++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999875411 11 1457888999999999999999999998753 21111 236677778888889999999
Q ss_pred HHHHHHHHcCCCCC------HHHHHHHHHHHHhcCCHHHHHHH
Q 043144 522 DILADMVTRSCKPT------EATYTILIEGIAYEGLAKEALDL 558 (580)
Q Consensus 522 ~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~ 558 (580)
..+++.+ . .|+ ......++.++ ..|+.+.+.++
T Consensus 216 ~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 216 KCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 9999998 4 232 12345556655 67888777663
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.92 E-value=8.8e-08 Score=84.31 Aligned_cols=128 Identities=13% Similarity=-0.033 Sum_probs=92.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 043144 398 TYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLS 477 (580)
Q Consensus 398 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 477 (580)
.+..+...+...|++++|...|++.. .|+...|..+...|...|++++|...|++..... +.+...+..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 45556667777888888888877663 3566777777778888888888888888777653 345667777777888
Q ss_pred hCCCHHHHHHHHHHHHhCCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043144 478 REGKVDEAIKLFHDLERLGVRPN---------------VITYNSIMLGLCKARQTYRAIDILADMVTR 530 (580)
Q Consensus 478 ~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 530 (580)
..|++++|...|+++.+..+... ...+..++.+|...|++++|.+.++++++.
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 88888888888888776543311 256677777777888888888888777754
No 118
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.90 E-value=5.5e-07 Score=83.83 Aligned_cols=217 Identities=10% Similarity=0.014 Sum_probs=114.6
Q ss_pred HHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-C-ChHHHHHHH
Q 043144 343 GRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEK-KMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKD-G-KVDVAVEIL 419 (580)
Q Consensus 343 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~~~~A~~~~ 419 (580)
++|++++++++..++. +..+|+.-...+...| .+++++.+++.++...++ +..+|+.-..++.+. + ++++++.++
T Consensus 71 e~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL~~~ 148 (349)
T 3q7a_A 71 ERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEIEYI 148 (349)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 4455555555554332 3444444444444444 355555555555554332 334444444444443 4 555555555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhCCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC-------HHH
Q 043144 420 NQLSNKHCSPVLITYNTVIDGLSKVGKTE--------QAMKLLEEMRTKGLKPDTITYSSLVGGLSREGK-------VDE 484 (580)
Q Consensus 420 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~-------~~~ 484 (580)
+.+.+.+ +.+...|+.-...+.+.|.++ ++++.++++++.. +-|...|+.....+.+.+. +++
T Consensus 149 ~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~e 226 (349)
T 3q7a_A 149 HGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQD 226 (349)
T ss_dssp HHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHH
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHH
Confidence 5555544 334444544444443333333 6666666666654 2355666666666655554 566
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHHcC-----CCCCHHHH
Q 043144 485 AIKLFHDLERLGVRPNVITYNSIMLGLCKARQT--------------------YRAIDILADMVTRS-----CKPTEATY 539 (580)
Q Consensus 485 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~~-----~~~~~~~~ 539 (580)
+++.+++++...+. |...|+.+-..+.+.|+. ....++..++.... -.++...+
T Consensus 227 ELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al 305 (349)
T 3q7a_A 227 ELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLAL 305 (349)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHH
Confidence 77777776665544 666666665555555543 22222222222211 13556677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Q 043144 540 TILIEGIAYEGLAKEALDLLNQLCS 564 (580)
Q Consensus 540 ~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (580)
..|+++|...|+.++|.++++.+.+
T Consensus 306 ~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 306 EYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 7778888877888888888888763
No 119
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.89 E-value=6.2e-07 Score=83.29 Aligned_cols=164 Identities=13% Similarity=0.069 Sum_probs=112.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-CC----HHHHH
Q 043144 401 TLLTALCKDGKVDVAVEILNQLSNKHC-SPVL----ITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLK-PD----TITYS 470 (580)
Q Consensus 401 ~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~ 470 (580)
..+..+...|++++|..++++..+... .|+. ..+..+...+...|++++|+..|++..+.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 345667778888888888888776431 1221 12334566666777888888888888764222 22 23578
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHh----C-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHH
Q 043144 471 SLVGGLSREGKVDEAIKLFHDLER----L-GVRP-NVITYNSIMLGLCKARQTYRAIDILADMVTR----SCKPT-EATY 539 (580)
Q Consensus 471 ~l~~~~~~~g~~~~A~~~~~~~~~----~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~ 539 (580)
.+...|...|++++|..+|+++.+ . +..+ ...++..++.+|...|++++|++.++++++. +..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 888888888888888888888763 1 1111 1346778888888899999998888887643 21222 5678
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHh
Q 043144 540 TILIEGIAYEGL-AKEALDLLNQLCS 564 (580)
Q Consensus 540 ~~l~~~~~~~g~-~~~A~~~~~~~~~ 564 (580)
..++.+|...|+ +++|.+.++++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 888888888884 5888888887754
No 120
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.89 E-value=7.3e-08 Score=84.84 Aligned_cols=126 Identities=10% Similarity=0.018 Sum_probs=105.7
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043144 86 ESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYC 165 (580)
Q Consensus 86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 165 (580)
.+..+...+...|++++|+..|++++ .|+...+..++..+.+.|++++|...|++..... +.+...+..++.+|.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 45667788889999999999998874 4577889999999999999999999999998876 667888999999999
Q ss_pred hcCChhHHHHHHHHc--CCCCCc----------------chHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043144 166 RLGEIDNALQVLERM--SVAPDV----------------VTYNTILRTLCDSGKLNLAMEVLHKQLEKE 216 (580)
Q Consensus 166 ~~g~~~~A~~~~~~~--~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 216 (580)
..|++++|++.|+++ ..+.+. ..+..++.++.+.|++++|.+.|+++++..
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999999999999987 223333 678888888999999999999999888765
No 121
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.87 E-value=8.1e-08 Score=76.31 Aligned_cols=98 Identities=12% Similarity=0.039 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043144 468 TYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIA 547 (580)
Q Consensus 468 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 547 (580)
.+......+.+.|++++|+..|+++.+..+. +...|..++.+|...|++++|+..+++.++.. +.+...|..++.++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 3444455555555555555555555544332 44555555555555555555555555555442 344555555555555
Q ss_pred hcCCHHHHHHHHHHHHhCCC
Q 043144 548 YEGLAKEALDLLNQLCSRGV 567 (580)
Q Consensus 548 ~~g~~~~A~~~~~~~~~~g~ 567 (580)
..|++++|.+.++++++..+
T Consensus 93 ~~~~~~~A~~~~~~al~l~P 112 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDP 112 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCT
T ss_pred HCCCHHHHHHHHHHHHHHCc
Confidence 55555555555555555443
No 122
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.85 E-value=3e-08 Score=81.33 Aligned_cols=97 Identities=14% Similarity=-0.008 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043144 468 TYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIA 547 (580)
Q Consensus 468 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 547 (580)
.+..+...+.+.|++++|...|+++....+. +...|..+..+|...|++++|+..|+++++.. |.++..|..++.+|.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 3444444555555555555555555544332 44455555555555555555555555555442 334445555555555
Q ss_pred hcCCHHHHHHHHHHHHhCC
Q 043144 548 YEGLAKEALDLLNQLCSRG 566 (580)
Q Consensus 548 ~~g~~~~A~~~~~~~~~~g 566 (580)
..|++++|.+.|+++++..
T Consensus 116 ~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 5555555555555555443
No 123
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.85 E-value=2e-06 Score=80.01 Aligned_cols=231 Identities=7% Similarity=-0.012 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhc-C-CHHHHHHHHH
Q 043144 309 DAERLLAEMVLKGCSPSVVTFNILINFLCRKG-LLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKE-K-KMDRAIEYLE 385 (580)
Q Consensus 309 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~A~~~~~ 385 (580)
+|+++++.++..+ +.+..+|+.-...+...| .+++++..++.++...++ +..+|+.-...+... + ++++++.+++
T Consensus 72 ~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~ 149 (349)
T 3q7a_A 72 RALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEIEYIH 149 (349)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 3444444444432 223333443333333334 244444444444443322 334444433333333 3 4444444444
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChH--------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC-------HHHH
Q 043144 386 IMVSRGCYPDIVTYNTLLTALCKDGKVD--------VAVEILNQLSNKHCSPVLITYNTVIDGLSKVGK-------TEQA 450 (580)
Q Consensus 386 ~~~~~~~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~A 450 (580)
++++...+ +..+|+.-.-++.+.|.++ ++++.++++.+.+ +.|...|+.....+.+.++ ++++
T Consensus 150 k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eE 227 (349)
T 3q7a_A 150 GSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDE 227 (349)
T ss_dssp HHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHH
T ss_pred HHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHH
Confidence 44443222 3334433333333333333 5555555555443 2344455555555444443 4566
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH--------------------HHHHHHHHHHHhCC-----CCCCHHHHH
Q 043144 451 MKLLEEMRTKGLKPDTITYSSLVGGLSREGKV--------------------DEAIKLFHDLERLG-----VRPNVITYN 505 (580)
Q Consensus 451 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~~-----~~~~~~~~~ 505 (580)
++.+++++... +-|...|+.+-..+.+.|+. ........++.... ..++...+.
T Consensus 228 Le~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~ 306 (349)
T 3q7a_A 228 LIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALE 306 (349)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHH
Confidence 66666666543 33555565555555544432 22222222222211 124677788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043144 506 SIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIE 544 (580)
Q Consensus 506 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 544 (580)
.|+..|...|+.++|.++++.+.+.--+....-|...++
T Consensus 307 ~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 307 YLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 888888888888888888888876533444455554443
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.84 E-value=1.6e-07 Score=78.66 Aligned_cols=129 Identities=12% Similarity=-0.011 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043144 432 ITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGL 511 (580)
Q Consensus 432 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 511 (580)
..+..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|...++++.+..+. +...|..++.++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 345666677777888888888888777653 335677777788888888888888888888765433 677778888888
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH--HHHHHhcCCHHHHHHHHHHHH
Q 043144 512 CKARQTYRAIDILADMVTRSCKPTEATYTIL--IEGIAYEGLAKEALDLLNQLC 563 (580)
Q Consensus 512 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~ 563 (580)
...|++++|...++++.+.. +.+...+..+ +..+...|++++|.+.+++..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 88888888888888887763 4455555433 334677788888888877664
No 125
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.83 E-value=1.4e-07 Score=74.87 Aligned_cols=110 Identities=16% Similarity=0.110 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043144 432 ITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGL 511 (580)
Q Consensus 432 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 511 (580)
..+......|.+.|++++|++.|++.++.. +.+...|..+..++...|++++|+..++++++.++. +...|..++.+|
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHH
Confidence 345556666777777777777777776653 335667777777777777777777777777765543 566777777777
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043144 512 CKARQTYRAIDILADMVTRSCKPTEATYTILIE 544 (580)
Q Consensus 512 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 544 (580)
...|++++|++.|++.++.. |.+...+..+..
T Consensus 92 ~~~~~~~~A~~~~~~al~l~-P~~~~a~~~l~~ 123 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVD-PSNEEAREGVRN 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC-cCCHHHHHHHHH
Confidence 77777777777777777653 445555555543
No 126
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.80 E-value=1.2e-06 Score=81.29 Aligned_cols=166 Identities=12% Similarity=0.033 Sum_probs=104.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC---CCC--HH
Q 043144 398 TYNTLLTALCKDGKVDVAVEILNQLSNKHCSPV-----LITYNTVIDGLSKVGKTEQAMKLLEEMRTKGL---KPD--TI 467 (580)
Q Consensus 398 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~---~p~--~~ 467 (580)
.+...+..+...|++++|.+.+....+...... ...+..+...+...|++++|+..+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344455566677777777777766655432111 11233345556677788888888877765321 111 34
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHH---hCCCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCC-CH
Q 043144 468 TYSSLVGGLSREGKVDEAIKLFHDLE---RLGVR-P--NVITYNSIMLGLCKARQTYRAIDILADMVTRS----CKP-TE 536 (580)
Q Consensus 468 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~-~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~-~~ 536 (580)
+++.+...|...|++++|...++++. +.... + ...++..++.+|...|++++|+..+++.++.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 67777778888888888888888775 21111 1 12467777888888888888888888776431 111 15
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 043144 537 ATYTILIEGIAYEGLAKEA-LDLLNQLC 563 (580)
Q Consensus 537 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 563 (580)
.++..++.+|...|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 6777788888888888888 66676654
No 127
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.80 E-value=3.2e-08 Score=81.28 Aligned_cols=95 Identities=13% Similarity=-0.021 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043144 433 TYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLC 512 (580)
Q Consensus 433 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 512 (580)
.+..+...+...|++++|...|++.+... +.+...|..+..++...|++++|...|+++....+. +...+..+..+|.
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHH
Confidence 34444445555555555555555554432 224444555555555555555555555555444332 3444445555555
Q ss_pred hcCCHHHHHHHHHHHHH
Q 043144 513 KARQTYRAIDILADMVT 529 (580)
Q Consensus 513 ~~g~~~~A~~~~~~~~~ 529 (580)
..|++++|+..|++.++
T Consensus 101 ~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQE 117 (148)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555544
No 128
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.79 E-value=4.6e-08 Score=87.93 Aligned_cols=188 Identities=8% Similarity=-0.058 Sum_probs=105.8
Q ss_pred HcCChHHHHHHHHHHHhCCCCCChhhHHHH-------HHHHHhcCChHHHHHHHHHHHhC------------CCC-----
Q 043144 96 RNGELEEGFKFLESMVYHGDIPDIIPCTSL-------IRGFCKVGKTRKATRVMEIVEDS------------GAV----- 151 (580)
Q Consensus 96 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~------------~~~----- 151 (580)
+.+++.+|.+.|.++... .|.....|..+ ...+.+.++..++...+..-... |..
T Consensus 18 ~~~d~~~A~~~F~~a~~~-dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNY-DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHh-ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 467777777777777765 34455667666 45555555555555555554431 100
Q ss_pred ---CCHHHHHHHHHHHHhcCChhHHHHHHHHc-CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--hhhHH
Q 043144 152 ---PDVITYNVLISGYCRLGEIDNALQVLERM-SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPD--VITYT 225 (580)
Q Consensus 152 ---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~ 225 (580)
.-...+..+...+...|++++|.++|+.+ ...|+......+...+.+.+++++|+..|+...... .|. ...+.
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~ 175 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGV 175 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHH
Confidence 00122334556666677777777777766 223332255556666667777777777766544321 111 22455
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 043144 226 ILIEATCKESGVGQAMKLLDEMRNKGCIPD--VVTYNVLVNGICKEGRLDEAIKFLNDMPSY 285 (580)
Q Consensus 226 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 285 (580)
.+..++...|++++|+..|++.......|. ...+..+..++.+.|+.++|..+|+++...
T Consensus 176 ~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 176 AHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 566666666666666666666653321132 234445555666666666666666666654
No 129
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.78 E-value=3.8e-08 Score=90.81 Aligned_cols=192 Identities=7% Similarity=-0.019 Sum_probs=96.3
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc-CCC-CCcchHHHHHHH
Q 043144 118 DIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM-SVA-PDVVTYNTILRT 195 (580)
Q Consensus 118 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~ 195 (580)
+...+..++..+.+.|++++|...|++..... +.+...|..++.+|.+.|++++|+..++++ ... .+...+..++.+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34455556666666666666666666666654 445666666666666667777776666665 222 334566666666
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHH
Q 043144 196 LCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEA 275 (580)
Q Consensus 196 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 275 (580)
+...|++++|...|+++++.+.. +...+...+....+ ..++.. +..........+......+... ..|+.++|
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A 154 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHSYLTRL--IAAERERE 154 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHHHHHHH--HHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHHHHHH--HHHHHHHH
Confidence 66777777777666666553210 10011111111111 111111 1112222223333333333222 25677777
Q ss_pred HHHHHHhhhCCCCCCH-HHHHHHHHHHHhc-CChHHHHHHHHHHHH
Q 043144 276 IKFLNDMPSYGCQPNV-ITHNIILRSMCST-GRWMDAERLLAEMVL 319 (580)
Q Consensus 276 ~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~-~~~~~a~~~~~~~~~ 319 (580)
++.+++..+. .|+. .....+...+... +.+++|.++|..+.+
T Consensus 155 ~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 155 LEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 7777766654 2333 2222232223333 456666666666544
No 130
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.77 E-value=1.5e-07 Score=84.57 Aligned_cols=49 Identities=4% Similarity=-0.135 Sum_probs=34.7
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHH-------HHHHHhcCChhHHHHHHHHc
Q 043144 131 KVGKTRKATRVMEIVEDSGAVPDVITYNVL-------ISGYCRLGEIDNALQVLERM 180 (580)
Q Consensus 131 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~ 180 (580)
..++...|.+.|.++.... |.....|+.+ ...+.+.++..+++..+.+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~ 73 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGS 73 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHT
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888888876 6677788777 45555555556666555554
No 131
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.77 E-value=1.4e-06 Score=80.91 Aligned_cols=163 Identities=12% Similarity=0.052 Sum_probs=117.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHHHH
Q 043144 367 VLHGFCKEKKMDRAIEYLEIMVSRGC-YPDIV----TYNTLLTALCKDGKVDVAVEILNQLSNKHCS-PV----LITYNT 436 (580)
Q Consensus 367 l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~ 436 (580)
.+..+...|++++|...+++..+... .|+.. .+..+...+...|++++|...++++...... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667778888888888888776422 12211 2334666677777888998888888764322 22 235888
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHC-----CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhC----CCCCC-HHHHH
Q 043144 437 VIDGLSKVGKTEQAMKLLEEMRTK-----GLKPD-TITYSSLVGGLSREGKVDEAIKLFHDLERL----GVRPN-VITYN 505 (580)
Q Consensus 437 l~~~~~~~g~~~~A~~~~~~m~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~ 505 (580)
+...|...|++++|...|+++.+. +..+. ..++..+...|.+.|++++|...++++.+. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888899999999999999888741 11122 336788889999999999999999987642 22222 66888
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHH
Q 043144 506 SIMLGLCKARQ-TYRAIDILADMVT 529 (580)
Q Consensus 506 ~l~~~~~~~g~-~~~A~~~~~~~~~ 529 (580)
.++.+|...|+ +++|.+.+++++.
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999994 6999999998864
No 132
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.76 E-value=4.6e-07 Score=71.51 Aligned_cols=116 Identities=13% Similarity=0.142 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 043144 431 LITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLG 510 (580)
Q Consensus 431 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 510 (580)
...+..+...+...|++++|.+.++++.... +.+..++..+...+...|++++|..+++++.+..+. +...+..++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHH
Confidence 3455556666666666666666666665542 234556666666666667777777766666654332 55566666666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 043144 511 LCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYE 549 (580)
Q Consensus 511 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 549 (580)
|...|++++|...++++.+.. +.+...+..+..++...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhc
Confidence 667777777777777666553 44555555555555443
No 133
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.76 E-value=1.3e-07 Score=79.21 Aligned_cols=125 Identities=12% Similarity=0.062 Sum_probs=79.6
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043144 86 ESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYC 165 (580)
Q Consensus 86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 165 (580)
.+..+...+...|++++|+..|++++.. .+.+..++..++.++...|++++|...+++..... +.+...+..++.++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL-NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 4566677777777777777777777765 34456667777777777777777777777776654 455666777777777
Q ss_pred hcCChhHHHHHHHHc-CC-CCCcchHHH--HHHHHHhcCChhHHHHHHHHH
Q 043144 166 RLGEIDNALQVLERM-SV-APDVVTYNT--ILRTLCDSGKLNLAMEVLHKQ 212 (580)
Q Consensus 166 ~~g~~~~A~~~~~~~-~~-~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~ 212 (580)
..|++++|...|+++ .. +.+...+.. ++..+...|++++|++.+...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 777777777777665 21 223333322 223355556666666655543
No 134
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.76 E-value=1.1e-07 Score=80.90 Aligned_cols=120 Identities=5% Similarity=0.013 Sum_probs=59.8
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhCCCH--HH
Q 043144 408 KDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGG-LSREGKV--DE 484 (580)
Q Consensus 408 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~g~~--~~ 484 (580)
..|++++|...++...+.. +.+...|..+...|...|++++|...|++..+.. +.+...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 3455555555555554433 2334555555555555555555555555555432 2234444455555 4455555 55
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043144 485 AIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTR 530 (580)
Q Consensus 485 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 530 (580)
|...++++.+..+. +...+..++.+|...|++++|...++++++.
T Consensus 100 A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 55555555544322 3445555555555555555555555555544
No 135
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.75 E-value=3.2e-07 Score=73.12 Aligned_cols=119 Identities=13% Similarity=0.049 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 043144 431 LITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLG 510 (580)
Q Consensus 431 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 510 (580)
...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...++++.+..+. +...+..++.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHH
Confidence 4456666777777777888887777776653 335667777777778888888888888887765433 56677777778
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 043144 511 LCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLA 552 (580)
Q Consensus 511 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 552 (580)
|...|++++|...+++..+.. +.+...+..++.++...|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 888888888888888877663 55677777777777777664
No 136
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.75 E-value=9.5e-08 Score=78.34 Aligned_cols=98 Identities=11% Similarity=-0.055 Sum_probs=77.5
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc--CCCCCcchHHHHHHH
Q 043144 118 DIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM--SVAPDVVTYNTILRT 195 (580)
Q Consensus 118 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~ 195 (580)
+...+..+...+.+.|++++|...|+++.... |.++..|..++.+|...|++++|+..|+++ -.|.+...|..++.+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence 45567777888888888888888888888776 667888888888888888888888888887 224456778888888
Q ss_pred HHhcCChhHHHHHHHHHHhCC
Q 043144 196 LCDSGKLNLAMEVLHKQLEKE 216 (580)
Q Consensus 196 ~~~~g~~~~A~~~~~~~~~~~ 216 (580)
|.+.|++++|+..|+++++..
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHHhC
Confidence 888888888888888887754
No 137
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.74 E-value=2.7e-07 Score=73.90 Aligned_cols=118 Identities=14% Similarity=0.080 Sum_probs=79.8
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043144 430 VLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIML 509 (580)
Q Consensus 430 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 509 (580)
+...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++++.+..+. +...+..++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHH
Confidence 34556666777777777777777777776653 335666777777777777777777777777665433 5667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 043144 510 GLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEG 550 (580)
Q Consensus 510 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 550 (580)
+|...|++++|...+++..+.. +.+...+..+..++...|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 7777777777777777777652 344556666666666554
No 138
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.74 E-value=1.3e-07 Score=82.46 Aligned_cols=96 Identities=11% Similarity=-0.062 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----H
Q 043144 468 TYSSLVGGLSREGKVDEAIKLFHDLERL----GVRP--NVITYNSIMLGLCKARQTYRAIDILADMVTRSC-KPT----E 536 (580)
Q Consensus 468 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~ 536 (580)
++..+...+...|++++|...+++..+. +..| ....+..+...+...|++++|...+++..+..- ..+ .
T Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 147 (203)
T 3gw4_A 68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA 147 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHH
Confidence 3444444555555555555555544321 1011 122344455555555555555555555442100 011 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043144 537 ATYTILIEGIAYEGLAKEALDLLNQLC 563 (580)
Q Consensus 537 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 563 (580)
.++..++.++...|++++|.+.+++..
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 223445555555555555555555544
No 139
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.73 E-value=5.1e-08 Score=89.90 Aligned_cols=190 Identities=10% Similarity=-0.001 Sum_probs=133.2
Q ss_pred ccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043144 85 FESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGY 164 (580)
Q Consensus 85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (580)
..+..+...+...|++++|+..|++++.. .+.+...+..+..+|.+.|++++|...+++..+.. +.+...+..++.+|
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITR-NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 35777889999999999999999999987 45578899999999999999999999999999876 67788999999999
Q ss_pred HhcCChhHHHHHHHHc-CCCCC-cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHH
Q 043144 165 CRLGEIDNALQVLERM-SVAPD-VVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMK 242 (580)
Q Consensus 165 ~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 242 (580)
...|++++|+..|+++ ...|+ ...+...+....+. .++.. +........+.+......+... ..|++++|.+
T Consensus 83 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A~~ 156 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYLTRL--IAAERERELE 156 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHHHHH--HHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHHH
Confidence 9999999999999987 21121 11111122211111 11111 2222233344455444444332 3688999999
Q ss_pred HHHHHHHcCCCCC-HhHHHHHHHHHHhc-CCHHHHHHHHHHhhh
Q 043144 243 LLDEMRNKGCIPD-VVTYNVLVNGICKE-GRLDEAIKFLNDMPS 284 (580)
Q Consensus 243 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 284 (580)
.++...+. .|+ ......+...+.+. +.+++|.++|.++.+
T Consensus 157 ~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 157 ECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp TTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99888765 333 34444455555554 678899999998765
No 140
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.73 E-value=5.5e-07 Score=83.69 Aligned_cols=164 Identities=9% Similarity=0.014 Sum_probs=91.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHc-CC---CCC----c
Q 043144 120 IPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPD-----VITYNVLISGYCRLGEIDNALQVLERM-SV---APD----V 186 (580)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~~~----~ 186 (580)
..+...+..+...|++++|.+.+....+...... ...+..++..+...|++++|+..+++. .. ..+ .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3444455556666666666666665555431111 012333555556666666666666654 11 111 2
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHh---CCCC-C--ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcC----CCC-C
Q 043144 187 VTYNTILRTLCDSGKLNLAMEVLHKQLE---KECY-P--DVITYTILIEATCKESGVGQAMKLLDEMRNKG----CIP-D 255 (580)
Q Consensus 187 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~-~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~-~ 255 (580)
.+++.++..|...|++++|+..|+++++ .... + ...++..+...|...|++++|...+++..+.. ... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 2566666677777777777777766652 1100 0 11466666777777777777777777665431 111 1
Q ss_pred HhHHHHHHHHHHhcCCHHHH-HHHHHHhh
Q 043144 256 VVTYNVLVNGICKEGRLDEA-IKFLNDMP 283 (580)
Q Consensus 256 ~~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 283 (580)
..+|..+..+|.+.|++++| ...|++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 45667777777777777777 66566544
No 141
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.72 E-value=9.4e-06 Score=75.22 Aligned_cols=187 Identities=7% Similarity=0.003 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC-HHHHHHH
Q 043144 377 MDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDG--KVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGK-TEQAMKL 453 (580)
Q Consensus 377 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~ 453 (580)
+++++.+++.++...++ +..+|+.-..++.+.| .+++++.+++.+.+.+ +.+...|+.-...+...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 34555555555554332 4445554444444544 2555555555555544 3345555555555555555 3556666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----
Q 043144 454 LEEMRTKGLKPDTITYSSLVGGLSRE--------------GKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKA----- 514 (580)
Q Consensus 454 ~~~m~~~~~~p~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 514 (580)
++++++.. +-|...|+.....+... +.++++++.+..+....+. |...|+.+-..+...
T Consensus 168 ~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccc
Confidence 66665543 22444555444443332 3456666666666655544 566665554444443
Q ss_pred ------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHH---HHHhcCCHHHHHHHHHHHHhCCCC
Q 043144 515 ------RQTYRAIDILADMVTRSCKPTEATYTILIE---GIAYEGLAKEALDLLNQLCSRGVV 568 (580)
Q Consensus 515 ------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~g~~~~A~~~~~~~~~~g~~ 568 (580)
+.++++++.++++.+.. |.+.-++..++. .....|..+++..++.++++.++.
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~-pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~ 307 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELE-PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 307 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGG
T ss_pred cchHHHHHHHHHHHHHHHHHhhC-cccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcc
Confidence 34667777777777652 222222222221 112356667777777777765543
No 142
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.71 E-value=9.3e-08 Score=81.34 Aligned_cols=121 Identities=7% Similarity=0.053 Sum_probs=98.4
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCh--
Q 043144 94 LVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISG-YCRLGEI-- 170 (580)
Q Consensus 94 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~-- 170 (580)
+...|++++|+..++.++.. .+.+...|..++..|...|++++|...|++..... +.+...+..++.+ |...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA-NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHH-CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence 34578899999999998876 45677889999999999999999999999998876 5678888888888 7788998
Q ss_pred hHHHHHHHHc--CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043144 171 DNALQVLERM--SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKE 216 (580)
Q Consensus 171 ~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 216 (580)
++|+..|+++ ..+.+...+..++.++...|++++|...|+++++..
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 9999999987 224456788889999999999999999999988865
No 143
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.70 E-value=5.9e-08 Score=79.66 Aligned_cols=107 Identities=15% Similarity=-0.020 Sum_probs=69.7
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc--CCCC
Q 043144 107 LESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM--SVAP 184 (580)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~ 184 (580)
|++++.. .|.+...+..+...+.+.|++++|...|+.+.... |.+...|..++.+|...|++++|+..|+++ -.+.
T Consensus 10 ~~~al~~-~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 87 (148)
T 2vgx_A 10 IAMLNEI-SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX 87 (148)
T ss_dssp HHHHTTC-CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHcC-CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 4444433 23344556666667777777777777777776655 556667777777777777777777777766 2234
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043144 185 DVVTYNTILRTLCDSGKLNLAMEVLHKQLEK 215 (580)
Q Consensus 185 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 215 (580)
+...+..++.+|...|++++|...|++.++.
T Consensus 88 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 88 EPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5566677777777777777777777776654
No 144
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.70 E-value=4.4e-07 Score=86.01 Aligned_cols=123 Identities=11% Similarity=-0.027 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 043144 396 IVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPV--------------LITYNTVIDGLSKVGKTEQAMKLLEEMRTKG 461 (580)
Q Consensus 396 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 461 (580)
...+..+...+.+.|++++|...|++..+...... ...|..+..+|.+.|++++|+..+++.++..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34666677777777777777777777666542111 2344444444444444444444444444432
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 043144 462 LKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRA 520 (580)
Q Consensus 462 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 520 (580)
+.+...|..+..++...|++++|...|+++.+..+. +...+..+..++...|++++|
T Consensus 227 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 227 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 223444444444444444444444444444443322 334444444444444444444
No 145
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.69 E-value=3.1e-07 Score=73.56 Aligned_cols=114 Identities=10% Similarity=0.066 Sum_probs=80.4
Q ss_pred ccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043144 85 FESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGY 164 (580)
Q Consensus 85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (580)
..+..+...+...|++++|+..|++++.. .+.+..++..+...+...|++++|...+++..+.. +.+...+..++.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKR-NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTT-CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHH
Confidence 46677777888888888888888888765 34466777777777888888888888888777765 45667777777777
Q ss_pred HhcCChhHHHHHHHHc-CC-CCCcchHHHHHHHHHhcC
Q 043144 165 CRLGEIDNALQVLERM-SV-APDVVTYNTILRTLCDSG 200 (580)
Q Consensus 165 ~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g 200 (580)
...|++++|++.|++. .. +.+...+..+..++.+.|
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 7778888887777776 22 233455555555555443
No 146
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.69 E-value=3e-07 Score=72.55 Aligned_cols=93 Identities=14% Similarity=0.206 Sum_probs=57.9
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043144 86 ESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYC 165 (580)
Q Consensus 86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 165 (580)
.+..+...+...|++++|++.|++++.. .+.+..++..++..+...|++++|..+|+++.... +.+..++..++..|.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALEL-DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH-CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 4555666666666777776666666654 23445566666666666666666666666666544 445556666666666
Q ss_pred hcCChhHHHHHHHHc
Q 043144 166 RLGEIDNALQVLERM 180 (580)
Q Consensus 166 ~~g~~~~A~~~~~~~ 180 (580)
..|++++|...|+++
T Consensus 89 ~~~~~~~A~~~~~~~ 103 (125)
T 1na0_A 89 KQGDYDEAIEYYQKA 103 (125)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHH
Confidence 666666666666655
No 147
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.68 E-value=3.1e-07 Score=73.23 Aligned_cols=114 Identities=8% Similarity=0.016 Sum_probs=72.2
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043144 86 ESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYC 165 (580)
Q Consensus 86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 165 (580)
.+..+...+...|++++|+..|++++.. .+.+...+..++..+...|++++|...++...... +.+...+..++.++.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIEL-NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHH
Confidence 4556666777777777777777777665 33455666666777777777777777777766654 445666666666666
Q ss_pred hcCChhHHHHHHHHc-C-CCCCcchHHHHHHHHHhcCC
Q 043144 166 RLGEIDNALQVLERM-S-VAPDVVTYNTILRTLCDSGK 201 (580)
Q Consensus 166 ~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~ 201 (580)
..|++++|...|++. . .+.+...+..+..++.+.|+
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 677777777766665 2 22344555555555555554
No 148
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.67 E-value=1.3e-07 Score=82.34 Aligned_cols=60 Identities=12% Similarity=-0.048 Sum_probs=28.7
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCC-CCC----HhHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 043144 224 YTILIEATCKESGVGQAMKLLDEMRNKGC-IPD----VVTYNVLVNGICKEGRLDEAIKFLNDMP 283 (580)
Q Consensus 224 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 283 (580)
+..+...+...|++++|...+++..+... ..+ ..++..+...+...|++++|...+++..
T Consensus 110 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 110 AYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 44444455555555555555554432100 001 1224455556666666666666655543
No 149
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.66 E-value=4e-07 Score=72.32 Aligned_cols=95 Identities=17% Similarity=0.059 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043144 433 TYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLC 512 (580)
Q Consensus 433 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 512 (580)
.|......+...|++++|...|++.++.. +.+...|..+..++...|++++|+..++++.+..+. +...|..++.++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 34444455555555555555555555432 223445555555555555555555555555544322 3445555555555
Q ss_pred hcCCHHHHHHHHHHHHH
Q 043144 513 KARQTYRAIDILADMVT 529 (580)
Q Consensus 513 ~~g~~~~A~~~~~~~~~ 529 (580)
..|++++|+..++++++
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 55555555555555543
No 150
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.65 E-value=3.6e-05 Score=71.34 Aligned_cols=250 Identities=10% Similarity=0.021 Sum_probs=122.1
Q ss_pred hcCCHH-HHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 043144 268 KEGRLD-EAIKFLNDMPSYGCQPNVITHNIILRSMCSTGR----------WMDAERLLAEMVLKGCSPSVVTFNILINFL 336 (580)
Q Consensus 268 ~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 336 (580)
+.|.++ +|+.+++.+...+ +-+...|+.--..+...+. +++++.+++.++... +-+..+|+.-..++
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 455544 6777777777654 3344555544444333222 345555555555442 33444555444444
Q ss_pred HhcC--CHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 043144 337 CRKG--LLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKK-MDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVD 413 (580)
Q Consensus 337 ~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 413 (580)
...+ .+++++..++++.+..+. |..+|+.-...+...|. ++++++.+.++++..+. |...|+....++.+.+...
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC
T ss_pred hccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhcc
Confidence 4444 245555555555554332 44445544444444454 35555555555544332 4444444444333321100
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC-----------CCH
Q 043144 414 VAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSRE-----------GKV 482 (580)
Q Consensus 414 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-----------g~~ 482 (580)
.+- ..+ . ...+.++++++.+.+.+... +-|...|+.+-..+.+. +.+
T Consensus 197 ~~~-------~~~-~-------------~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l 254 (331)
T 3dss_A 197 DSG-------PQG-R-------------LPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVL 254 (331)
T ss_dssp --------------C-------------CCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHH
T ss_pred ccc-------ccc-c-------------cchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHH
Confidence 000 000 0 00033566667776666543 33555666554444444 346
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043144 483 DEAIKLFHDLERLGVRPNVITYNSIMLG---LCKARQTYRAIDILADMVTRSCKPTEATYTILIEG 545 (580)
Q Consensus 483 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 545 (580)
+++++.++++.+..+. +.-.+..++.. ....|..+++...+.++.+.. |....-|.-+...
T Consensus 255 ~~el~~~~elle~~pd-~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D-p~r~~~y~d~~~~ 318 (331)
T 3dss_A 255 QSELESCKELQELEPE-NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD-PMRAAYLDDLRSK 318 (331)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC-GGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcc-cchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC-cchhhHHHHHHHH
Confidence 7788888888765443 33333332221 113566777888888887652 3334445544443
No 151
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.64 E-value=4.1e-07 Score=74.02 Aligned_cols=96 Identities=9% Similarity=-0.049 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043144 433 TYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLC 512 (580)
Q Consensus 433 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 512 (580)
.+..+...+...|++++|...|++.+... +.+...|..+..++...|++++|...|+++....+. +...+..+..+|.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHH
Confidence 34444555555666666666666555442 224455555555556666666666666665554433 4445555555556
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 043144 513 KARQTYRAIDILADMVTR 530 (580)
Q Consensus 513 ~~g~~~~A~~~~~~~~~~ 530 (580)
..|++++|+..++++++.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 666666666666555543
No 152
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.63 E-value=1.2e-06 Score=68.23 Aligned_cols=98 Identities=12% Similarity=0.100 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043144 468 TYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIA 547 (580)
Q Consensus 468 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 547 (580)
.+..+...+...|++++|...++++....+. +...+..++.++...|++++|...+++..+.. +.+...+..++.++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 3444455555555555555555555443322 44455555555555555555555555555442 334555555555555
Q ss_pred hcCCHHHHHHHHHHHHhCCC
Q 043144 548 YEGLAKEALDLLNQLCSRGV 567 (580)
Q Consensus 548 ~~g~~~~A~~~~~~~~~~g~ 567 (580)
..|++++|.+.+++..+.++
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~ 103 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEA 103 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCT
T ss_pred HHhhHHHHHHHHHHHHHcCC
Confidence 55555555555555555443
No 153
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.62 E-value=6.1e-07 Score=75.10 Aligned_cols=100 Identities=10% Similarity=0.036 Sum_probs=83.5
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 043144 429 PVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIM 508 (580)
Q Consensus 429 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 508 (580)
.+...+..+...+...|++++|+..|++.++.. +.+...|..+..++...|++++|+..|+++.+..+. +...|..+.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 345677788888889999999999999988764 346778888888999999999999999998876644 678888889
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 043144 509 LGLCKARQTYRAIDILADMVTR 530 (580)
Q Consensus 509 ~~~~~~g~~~~A~~~~~~~~~~ 530 (580)
.+|...|++++|+..|++.++.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999988875
No 154
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.61 E-value=4.2e-07 Score=70.16 Aligned_cols=102 Identities=14% Similarity=0.035 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHH
Q 043144 466 TITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKP--TEATYTILI 543 (580)
Q Consensus 466 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~ 543 (580)
...+..+...+...|++++|...++++.+..+. +...+..++.++...|++++|...++++++.. +. +...+..++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 445566677777788888888888877765433 56677778888888888888888888887663 44 577788888
Q ss_pred HHHHhc-CCHHHHHHHHHHHHhCCCCC
Q 043144 544 EGIAYE-GLAKEALDLLNQLCSRGVVK 569 (580)
Q Consensus 544 ~~~~~~-g~~~~A~~~~~~~~~~g~~~ 569 (580)
.++... |++++|.+.++++.+..+..
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 888888 88888888888887766543
No 155
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.58 E-value=1.3e-06 Score=69.21 Aligned_cols=99 Identities=11% Similarity=0.023 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043144 466 TITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEG 545 (580)
Q Consensus 466 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 545 (580)
...+..+...+...|++++|...|+++.+..+. +...|..++.+|...|++++|+..++++++.. +.+...|..++.+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 345566666777777777777777777665443 56677777777777777777777777777653 5556677777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCC
Q 043144 546 IAYEGLAKEALDLLNQLCSRG 566 (580)
Q Consensus 546 ~~~~g~~~~A~~~~~~~~~~g 566 (580)
+...|++++|.+.++++.+..
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhC
Confidence 777777777777777777655
No 156
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.58 E-value=1.1e-06 Score=83.21 Aligned_cols=131 Identities=16% Similarity=0.027 Sum_probs=78.9
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 043144 360 NSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPD--------------IVTYNTLLTALCKDGKVDVAVEILNQLSNK 425 (580)
Q Consensus 360 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 425 (580)
+...+..+...+.+.|++++|+..|++.++...... ...+..+..+|.+.|++++|+..++++.+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344556666666666666666666666665432211 356666666666666666666666666655
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHH-HHHHHHH
Q 043144 426 HCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEA-IKLFHDL 492 (580)
Q Consensus 426 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A-~~~~~~~ 492 (580)
. +.+...|..+..+|...|++++|...|++.++.. +.+...+..+..++...|+.++| ...++.|
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 3345566666666666666666666666666543 23455566666666666666665 3344444
No 157
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.57 E-value=2.4e-06 Score=66.40 Aligned_cols=112 Identities=12% Similarity=0.012 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 043144 431 LITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLG 510 (580)
Q Consensus 431 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 510 (580)
...+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...++++.+..+. +...+..++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 3455666667777777777777777776653 335666777777777778888888888777765433 56677777777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043144 511 LCKARQTYRAIDILADMVTRSCKPTEATYTILIEG 545 (580)
Q Consensus 511 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 545 (580)
+...|++++|.+.+++..+.. +.+...+..+..+
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 115 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHE-ANNPQLKEGLQNM 115 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHh
Confidence 888888888888888777653 4455555555443
No 158
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.57 E-value=6.7e-07 Score=70.32 Aligned_cols=96 Identities=16% Similarity=-0.014 Sum_probs=65.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 043144 469 YSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAY 548 (580)
Q Consensus 469 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 548 (580)
+..+...+.+.|++++|...|+++.+..+. +...|..+..++...|++++|+..++++++.. +.+...+..++.++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 344555666777777777777777665443 66677777777777777777777777777653 4556677777777777
Q ss_pred cCCHHHHHHHHHHHHhCC
Q 043144 549 EGLAKEALDLLNQLCSRG 566 (580)
Q Consensus 549 ~g~~~~A~~~~~~~~~~g 566 (580)
.|++++|...++++++..
T Consensus 98 ~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred cCCHHHHHHHHHHHHHhC
Confidence 777777777777776654
No 159
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.56 E-value=1.6e-06 Score=75.15 Aligned_cols=132 Identities=9% Similarity=-0.038 Sum_probs=85.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-C--------------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC
Q 043144 434 YNTVIDGLSKVGKTEQAMKLLEEMRTKGLK-P--------------DTITYSSLVGGLSREGKVDEAIKLFHDLERLGVR 498 (580)
Q Consensus 434 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 498 (580)
+..+...+...|++++|...|++.+..... | ....+..+..++...|++++|+..++++.+..+.
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 120 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN 120 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence 444444555555555555555555543211 0 1256777888888889999999998888876543
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHhCCC
Q 043144 499 PNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEAL-DLLNQLCSRGV 567 (580)
Q Consensus 499 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~g~ 567 (580)
+...+..++.+|...|++++|+..+++.++.. +.+...+..+..++...|+.+++. ..+..+...|.
T Consensus 121 -~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~~ 188 (198)
T 2fbn_A 121 -NVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKGP 188 (198)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC--------------
T ss_pred -cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 67788888888889999999999998888763 566778888888888888777776 56666665544
No 160
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.56 E-value=2e-06 Score=69.27 Aligned_cols=100 Identities=12% Similarity=-0.045 Sum_probs=63.5
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 043144 429 PVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIM 508 (580)
Q Consensus 429 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 508 (580)
.+...|..+...+...|++++|...|++.+... +.+...+..+..++...|++++|...++++.+..+. +...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHH
Confidence 345566666666666777777777776666543 234556666666666667777777766666655433 556666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 043144 509 LGLCKARQTYRAIDILADMVTR 530 (580)
Q Consensus 509 ~~~~~~g~~~~A~~~~~~~~~~ 530 (580)
.+|...|++++|+..++++++.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 6666667777776666666543
No 161
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.55 E-value=2.9e-07 Score=74.99 Aligned_cols=95 Identities=15% Similarity=-0.060 Sum_probs=54.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc--CCCCCcchHHHHHHHHH
Q 043144 120 IPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM--SVAPDVVTYNTILRTLC 197 (580)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~ 197 (580)
..+..+...+.+.|++++|...|+.+.... |.+...|..++.+|...|++++|+..|+++ -.+.+...+..++.++.
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 344455555566666666666666655544 445555566666666666666666666655 12334455555666666
Q ss_pred hcCChhHHHHHHHHHHhC
Q 043144 198 DSGKLNLAMEVLHKQLEK 215 (580)
Q Consensus 198 ~~g~~~~A~~~~~~~~~~ 215 (580)
..|++++|...|+++++.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 666666666666655543
No 162
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.54 E-value=6.2e-07 Score=71.24 Aligned_cols=92 Identities=16% Similarity=0.163 Sum_probs=44.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc-CCCCC--------cchHHHH
Q 043144 122 CTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM-SVAPD--------VVTYNTI 192 (580)
Q Consensus 122 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~--------~~~~~~l 192 (580)
+..++..+.+.|++++|+..|++.++.. |.+...|..++.+|...|++++|++.|++. .+.|+ ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3444445555555555555555554443 334445555555555555555555555444 11110 1134444
Q ss_pred HHHHHhcCChhHHHHHHHHHHh
Q 043144 193 LRTLCDSGKLNLAMEVLHKQLE 214 (580)
Q Consensus 193 ~~~~~~~g~~~~A~~~~~~~~~ 214 (580)
+.++...|++++|++.|++.+.
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 5555555555555555555544
No 163
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.53 E-value=2e-06 Score=68.22 Aligned_cols=93 Identities=11% Similarity=0.071 Sum_probs=37.7
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC--CC----HHHHHHHHH
Q 043144 436 TVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVR--PN----VITYNSIML 509 (580)
Q Consensus 436 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~----~~~~~~l~~ 509 (580)
.+...+.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|+..++++++..+. ++ ..+|..+..
T Consensus 13 ~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~ 91 (127)
T 4gcn_A 13 DLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGN 91 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence 33444444444444444444444332 123334444444444444444444444444322110 00 123334444
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 043144 510 GLCKARQTYRAIDILADMVT 529 (580)
Q Consensus 510 ~~~~~g~~~~A~~~~~~~~~ 529 (580)
++...|++++|++.|++.+.
T Consensus 92 ~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 92 AFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHh
Confidence 44444444444444444443
No 164
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.51 E-value=9.8e-07 Score=68.01 Aligned_cols=93 Identities=9% Similarity=-0.061 Sum_probs=40.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc--CCCC--CcchHHHHHHHH
Q 043144 121 PCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM--SVAP--DVVTYNTILRTL 196 (580)
Q Consensus 121 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~--~~~~~~~l~~~~ 196 (580)
.+..++..+...|++++|...|++..+.. +.+...+..++.++...|++++|+..|++. ..+. +...+..++.++
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 34444444444444444444444444433 233344444444444444444444444443 1112 233444444444
Q ss_pred Hhc-CChhHHHHHHHHHHh
Q 043144 197 CDS-GKLNLAMEVLHKQLE 214 (580)
Q Consensus 197 ~~~-g~~~~A~~~~~~~~~ 214 (580)
.+. |++++|.+.++....
T Consensus 87 ~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGG
T ss_pred HHHhCCHHHHHHHHHHHhh
Confidence 444 444444444444443
No 165
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.51 E-value=7.4e-07 Score=70.09 Aligned_cols=93 Identities=13% Similarity=0.003 Sum_probs=79.2
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043144 86 ESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYC 165 (580)
Q Consensus 86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 165 (580)
.+..+...+.+.|++++|+..|++++.. .|.+...|..+..++...|++++|+..|++..+.. |.+...+..++.+|.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~-~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK-EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 4667778888999999999999999886 45677888888899999999999999999988876 567778888888998
Q ss_pred hcCChhHHHHHHHHc
Q 043144 166 RLGEIDNALQVLERM 180 (580)
Q Consensus 166 ~~g~~~~A~~~~~~~ 180 (580)
..|++++|+..|+++
T Consensus 97 ~~g~~~~A~~~~~~a 111 (121)
T 1hxi_A 97 NEHNANAALASLRAW 111 (121)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHH
Confidence 999999999988887
No 166
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.49 E-value=1.6e-06 Score=72.54 Aligned_cols=94 Identities=10% Similarity=0.044 Sum_probs=81.4
Q ss_pred ccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043144 85 FESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGY 164 (580)
Q Consensus 85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (580)
..+..+...+.+.|++++|+..|++++.. .+.+...|..+..+|.+.|++++|+..|++.+... +.+...|..++.+|
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSI-APANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 36777888899999999999999999886 45577888889999999999999999999998876 66788888899999
Q ss_pred HhcCChhHHHHHHHHc
Q 043144 165 CRLGEIDNALQVLERM 180 (580)
Q Consensus 165 ~~~g~~~~A~~~~~~~ 180 (580)
...|++++|+..|++.
T Consensus 90 ~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHH
Confidence 9999999999999887
No 167
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.49 E-value=1e-06 Score=76.44 Aligned_cols=119 Identities=12% Similarity=-0.013 Sum_probs=83.2
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCh----------------hhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 043144 86 ESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDI----------------IPCTSLIRGFCKVGKTRKATRVMEIVEDSG 149 (580)
Q Consensus 86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 149 (580)
.+..+...+...|++++|+..|++++.... .+. .++..+..+|.+.|++++|...++......
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFI-HTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTT-TCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHh-cccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 567778889999999999999999987632 222 566677777777777777777777777665
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHc-CC-CCCcchHHHHHHHHHhcCChhHHH
Q 043144 150 AVPDVITYNVLISGYCRLGEIDNALQVLERM-SV-APDVVTYNTILRTLCDSGKLNLAM 206 (580)
Q Consensus 150 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~ 206 (580)
+.+...+..++.+|...|++++|+..|++. .. +.+..++..+..++...++.+++.
T Consensus 119 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 119 -KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred -cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 556667777777777777777777777776 22 334555666666666655555554
No 168
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.49 E-value=6.1e-06 Score=67.27 Aligned_cols=112 Identities=12% Similarity=-0.058 Sum_probs=73.3
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 043144 430 VLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPD----TITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYN 505 (580)
Q Consensus 430 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 505 (580)
+...+..+...+...|++++|...|++..+. .|+ ...+..+...+...|++++|...++++.+..+. +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHH
Confidence 4555666666777777777777777777654 344 456666677777777777777777777655433 566666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043144 506 SIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEG 545 (580)
Q Consensus 506 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 545 (580)
.+..+|...|++++|...+++.++.. +.+...+..+...
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLE-PKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHH
Confidence 77777777777777777777777652 4445555544443
No 169
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.48 E-value=2.6e-06 Score=68.59 Aligned_cols=99 Identities=14% Similarity=-0.029 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043144 465 DTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIE 544 (580)
Q Consensus 465 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 544 (580)
+...+..+...+...|++++|...|+++....+. +...|..++.+|...|++++|...++++++.. +.+...|..++.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 3445555555555555555555555555544332 45555555555555555555555555555542 344555555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 043144 545 GIAYEGLAKEALDLLNQLCSR 565 (580)
Q Consensus 545 ~~~~~g~~~~A~~~~~~~~~~ 565 (580)
++...|++++|...++++.+.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 555555555555555555543
No 170
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.46 E-value=5.4e-06 Score=67.60 Aligned_cols=106 Identities=10% Similarity=-0.019 Sum_probs=92.0
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 043144 464 PDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPN---VITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYT 540 (580)
Q Consensus 464 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 540 (580)
.+...+..+...+...|++++|...|+++.+..+. + ...|..+..+|...|++++|+..+++.++.. +.+...+.
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDAT-PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc-chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 35778888999999999999999999999976432 2 6788899999999999999999999999873 56788999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCch
Q 043144 541 ILIEGIAYEGLAKEALDLLNQLCSRGVVKKS 571 (580)
Q Consensus 541 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~ 571 (580)
.++.++...|++++|.+.++++.+..+....
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~ 134 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKV 134 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 9999999999999999999999987755443
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.43 E-value=7.4e-07 Score=70.99 Aligned_cols=93 Identities=11% Similarity=0.172 Sum_probs=53.6
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-------HHHHH
Q 043144 86 ESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPD-------VITYN 158 (580)
Q Consensus 86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~ 158 (580)
.+..+...+...|++++|+..|++++.. .+.+...+..++..+...|++++|...++.+.... +.+ ..++.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL-DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-RENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-cccchhHHHHHHHHH
Confidence 3455566666666666666666666654 23445556666666666666666666666655443 111 44555
Q ss_pred HHHHHHHhcCChhHHHHHHHHc
Q 043144 159 VLISGYCRLGEIDNALQVLERM 180 (580)
Q Consensus 159 ~l~~~~~~~g~~~~A~~~~~~~ 180 (580)
.++.+|...|++++|.+.|+++
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~ 105 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKS 105 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHH
Confidence 5555555555555555555554
No 172
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.43 E-value=2.6e-06 Score=67.77 Aligned_cols=112 Identities=11% Similarity=0.093 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC--CC----HHHHH
Q 043144 432 ITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVR--PN----VITYN 505 (580)
Q Consensus 432 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~----~~~~~ 505 (580)
..+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...++++.+..+. ++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345555556666666666666666665543 334555666666666666666666666666543221 11 45566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043144 506 SIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGI 546 (580)
Q Consensus 506 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 546 (580)
.++.+|...|++++|.+.++++.+. .|+...+..+..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 122 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHHH
Confidence 6666677777777777777766654 34555555544443
No 173
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.42 E-value=1e-05 Score=79.81 Aligned_cols=61 Identities=15% Similarity=0.157 Sum_probs=38.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCh----------------hhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 043144 87 SNNHLRRLVRNGELEEGFKFLESMVYHGDIPDI----------------IPCTSLIRGFCKVGKTRKATRVMEIVED 147 (580)
Q Consensus 87 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 147 (580)
-..-.+.+...|++++|++.|..++........ .++..++..|.+.|++++|.+.+..+.+
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344567788889999999999998876322111 1244555666666666666666655443
No 174
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.39 E-value=1.9e-05 Score=77.84 Aligned_cols=23 Identities=9% Similarity=0.039 Sum_probs=14.5
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhC
Q 043144 333 INFLCRKGLLGRAIDILEKMPKH 355 (580)
Q Consensus 333 ~~~~~~~g~~~~a~~~~~~~~~~ 355 (580)
.+.+.+.|++++|++.|..+.+.
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~ 33 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDK 33 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHHCCCHHHHHHHHHHHHhh
Confidence 44455666777777777666654
No 175
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.36 E-value=8.8e-06 Score=64.58 Aligned_cols=93 Identities=16% Similarity=0.008 Sum_probs=55.8
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHH
Q 043144 436 TVIDGLSKVGKTEQAMKLLEEMRTKGLKPDT---ITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPN---VITYNSIML 509 (580)
Q Consensus 436 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~ 509 (580)
.+...+...|++++|...|+++.+.. +.+. ..+..+..++...|++++|...|+++.+..+. + ...+..++.
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHH
Confidence 34555666667777777776666542 1122 35555666666666666666666666654332 2 445566666
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 043144 510 GLCKARQTYRAIDILADMVTR 530 (580)
Q Consensus 510 ~~~~~g~~~~A~~~~~~~~~~ 530 (580)
++...|++++|...++++++.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 666666666666666666654
No 176
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.34 E-value=2.8e-06 Score=70.54 Aligned_cols=133 Identities=14% Similarity=0.076 Sum_probs=82.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC----CCC-CHH
Q 043144 433 TYNTVIDGLSKVGKTEQAMKLLEEMRTKGLK-PD----TITYSSLVGGLSREGKVDEAIKLFHDLERLG----VRP-NVI 502 (580)
Q Consensus 433 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~-~~~ 502 (580)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...++++.+.. ..+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4455555566666666666666665432100 11 1355666667777777777777777764321 111 134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043144 503 TYNSIMLGLCKARQTYRAIDILADMVTR----SCK-PTEATYTILIEGIAYEGLAKEALDLLNQLCSR 565 (580)
Q Consensus 503 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (580)
.+..+..++...|++++|.+.+++.++. +.+ ....++..++.++...|++++|.+.+++..+.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5667777788888888888888777643 111 11345677788888888888888888877653
No 177
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.34 E-value=2.8e-06 Score=84.51 Aligned_cols=119 Identities=11% Similarity=0.041 Sum_probs=96.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 043144 90 HLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGE 169 (580)
Q Consensus 90 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 169 (580)
+...+.+.|++++|++.|+++++. .+.+..+|..+..+|.+.|++++|...+++..+.. +.+...+..++.+|...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIEL-NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 344566789999999999999887 45568899999999999999999999999999886 6678899999999999999
Q ss_pred hhHHHHHHHHc-C-CCCCcchHHHHHHH--HHhcCChhHHHHHHH
Q 043144 170 IDNALQVLERM-S-VAPDVVTYNTILRT--LCDSGKLNLAMEVLH 210 (580)
Q Consensus 170 ~~~A~~~~~~~-~-~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 210 (580)
+++|++.|+++ . .+.+...+..+..+ +.+.|++++|++.++
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999987 2 23445567667666 888899999999988
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.33 E-value=1e-05 Score=64.15 Aligned_cols=92 Identities=12% Similarity=0.001 Sum_probs=64.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---HHHHHHH
Q 043144 87 SNNHLRRLVRNGELEEGFKFLESMVYHGDIPDI---IPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPD---VITYNVL 160 (580)
Q Consensus 87 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l 160 (580)
+..+...+...|++++|+..|+.++... |.+. ..+..+..++.+.|++++|...|+.+.... |.+ ...+..+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~l 82 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHH
Confidence 4456667777888888888888777652 2233 466677777778888888888887777654 333 5566667
Q ss_pred HHHHHhcCChhHHHHHHHHc
Q 043144 161 ISGYCRLGEIDNALQVLERM 180 (580)
Q Consensus 161 ~~~~~~~g~~~~A~~~~~~~ 180 (580)
+.+|...|++++|+..|+++
T Consensus 83 a~~~~~~g~~~~A~~~~~~~ 102 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQV 102 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 77777777777777777776
No 179
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.32 E-value=6.7e-07 Score=69.90 Aligned_cols=84 Identities=15% Similarity=0.093 Sum_probs=64.3
Q ss_pred HcCChHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 043144 96 RNGELEEGFKFLESMVYHG--DIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNA 173 (580)
Q Consensus 96 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 173 (580)
..|++++|+..|++++..+ .+.+..++..+..+|...|++++|...|++..+.. |.+...+..++.++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 3578888888888888764 34455778888888888888888888888888776 55677888888888888888888
Q ss_pred HHHHHHc
Q 043144 174 LQVLERM 180 (580)
Q Consensus 174 ~~~~~~~ 180 (580)
+..|++.
T Consensus 81 ~~~~~~a 87 (117)
T 3k9i_A 81 VELLLKI 87 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888876
No 180
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.32 E-value=5.7e-06 Score=68.90 Aligned_cols=99 Identities=11% Similarity=0.012 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHC--------CC---------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 043144 431 LITYNTVIDGLSKVGKTEQAMKLLEEMRTK--------GL---------KPDTITYSSLVGGLSREGKVDEAIKLFHDLE 493 (580)
Q Consensus 431 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--------~~---------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 493 (580)
...+......+.+.|++++|+..|.+.+.. .. +.+...|..+..++.+.|++++|+..++++.
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 445666777777888888888888877653 00 1122456666667777777777777777776
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043144 494 RLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTR 530 (580)
Q Consensus 494 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 530 (580)
+..+. +...|..++.+|...|++++|+..+++.++.
T Consensus 91 ~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 65433 5666667777777777777777777777655
No 181
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.31 E-value=6.3e-06 Score=81.65 Aligned_cols=150 Identities=15% Similarity=0.043 Sum_probs=90.9
Q ss_pred CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--------------HHHHHHHHH
Q 043144 375 KKMDRAIEYLEIMVSRGCYP-DIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPV--------------LITYNTVID 439 (580)
Q Consensus 375 ~~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~ 439 (580)
+++++|+..|+...+. .| ....+..+...+.+.|++++|...|+++.+...... ...|..+..
T Consensus 248 ~~~~~A~~~~~~~~~~--~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKE--KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEECCCCGGGSCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHH--HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 3444555544433322 12 344778888889999999999999998877542111 355666666
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 043144 440 GLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYR 519 (580)
Q Consensus 440 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 519 (580)
+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|...|+++.+..+. +...+..+..++...+++++
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 6667777777777777666553 234556666666666777777777777766665433 44556666666666666655
Q ss_pred HHH-HHHHHH
Q 043144 520 AID-ILADMV 528 (580)
Q Consensus 520 A~~-~~~~~~ 528 (580)
+.+ .++.|.
T Consensus 404 a~~~~~~~~f 413 (457)
T 1kt0_A 404 RDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHHH
Confidence 543 344443
No 182
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.28 E-value=1.1e-05 Score=77.35 Aligned_cols=140 Identities=7% Similarity=-0.048 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043144 396 IVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGG 475 (580)
Q Consensus 396 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 475 (580)
...+..+...+.+.|++++|...|+++.+.. +.. ...... ++..... +.+...|..+..+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~-------~~~~~~~-~~~~~~~~nla~~ 282 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAED-------ADGAKLQ-PVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCH-------HHHGGGH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccCh-------HHHHHHH-HHHHHHHHHHHHH
Confidence 3456667777777777777777777766421 000 000001 1111110 1235677788888
Q ss_pred HHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 043144 476 LSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEA 555 (580)
Q Consensus 476 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 555 (580)
+.+.|++++|+..++++.+..+. +...|..+..+|...|++++|++.++++++.. +.+...+..+..++...++.+++
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999888876544 67788888888889999999999998888763 55677888888888887777776
Q ss_pred HH
Q 043144 556 LD 557 (580)
Q Consensus 556 ~~ 557 (580)
.+
T Consensus 361 ~k 362 (370)
T 1ihg_A 361 EK 362 (370)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 183
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.28 E-value=2.7e-06 Score=84.69 Aligned_cols=119 Identities=13% Similarity=0.004 Sum_probs=81.0
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 043144 439 DGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTY 518 (580)
Q Consensus 439 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 518 (580)
..+...|++++|.+.|++.++.. +.+...|..+..++.+.|++++|+..++++.+..+. +...|..++.+|...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHH
Confidence 34556777888888887777653 335677777777888888888888888888776543 6677777778888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 043144 519 RAIDILADMVTRSCKPTEATYTILIEG--IAYEGLAKEALDLLN 560 (580)
Q Consensus 519 ~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 560 (580)
+|.+.++++++.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 92 eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888888877653 3344555555555 677788888877777
No 184
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.27 E-value=6e-06 Score=81.79 Aligned_cols=119 Identities=10% Similarity=-0.014 Sum_probs=83.0
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC---------------hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 043144 86 ESNNHLRRLVRNGELEEGFKFLESMVYHGDIPD---------------IIPCTSLIRGFCKVGKTRKATRVMEIVEDSGA 150 (580)
Q Consensus 86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 150 (580)
.+..+...+.+.|++++|+..|++++... +.+ ..+|..+..+|.+.|++++|+..|++++...
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 347 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD- 347 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence 45677788888999999999999888752 222 4566777777777777777777777777765
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHc-CCC-CCcchHHHHHHHHHhcCChhHHH
Q 043144 151 VPDVITYNVLISGYCRLGEIDNALQVLERM-SVA-PDVVTYNTILRTLCDSGKLNLAM 206 (580)
Q Consensus 151 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~A~ 206 (580)
+.+...|..++.+|...|++++|+..|+++ ... .+..++..+..++.+.++.+++.
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777777777777777777777776 333 34556666777776666666554
No 185
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.26 E-value=1.5e-05 Score=64.51 Aligned_cols=96 Identities=11% Similarity=0.016 Sum_probs=61.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC------C-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------
Q 043144 469 YSSLVGGLSREGKVDEAIKLFHDLERLGVRP------N-----VITYNSIMLGLCKARQTYRAIDILADMVTR------- 530 (580)
Q Consensus 469 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------- 530 (580)
+......+...|++++|+..|+++++..+.. + ...|..+..++...|++++|+..+++.++.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 3444455556666666666666665443221 2 226777777777777777777777777764
Q ss_pred CCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043144 531 SCKPTEATY----TILIEGIAYEGLAKEALDLLNQLCSR 565 (580)
Q Consensus 531 ~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (580)
. +.+...| ...+.++...|++++|+..|++.++.
T Consensus 94 ~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 94 N-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp T-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3 3345567 77777778888888888888777653
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.25 E-value=2.2e-06 Score=66.90 Aligned_cols=86 Identities=15% Similarity=0.137 Sum_probs=53.2
Q ss_pred CCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043144 444 VGKTEQAMKLLEEMRTKGL--KPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAI 521 (580)
Q Consensus 444 ~g~~~~A~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 521 (580)
.|++++|+..|++.++.+. +.+...+..+...+...|++++|...|+++.+..+. +...+..++.++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 4566667777776665421 223445666666777777777777777777665544 5666666777777777777777
Q ss_pred HHHHHHHHc
Q 043144 522 DILADMVTR 530 (580)
Q Consensus 522 ~~~~~~~~~ 530 (580)
..+++.+..
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777776654
No 187
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.24 E-value=2.9e-06 Score=70.40 Aligned_cols=95 Identities=13% Similarity=0.049 Sum_probs=57.4
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHHhCCCC-CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHhCC----CC-CCHH
Q 043144 86 ESNNHLRRLVRNGELEEGFKFLESMVYHGDI-PD----IIPCTSLIRGFCKVGKTRKATRVMEIVEDSG----AV-PDVI 155 (580)
Q Consensus 86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~-~~~~ 155 (580)
.+..+...+...|++++|+..+++++..... ++ ..++..+...+...|++++|...+++..+.. .+ ....
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 5667777788888888888888877654110 11 1356666677777777777777776655421 00 0133
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHc
Q 043144 156 TYNVLISGYCRLGEIDNALQVLERM 180 (580)
Q Consensus 156 ~~~~l~~~~~~~g~~~~A~~~~~~~ 180 (580)
++..++..+...|++++|.+.+++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a 115 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKH 115 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4555556666666666666666554
No 188
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.24 E-value=5.1e-05 Score=76.89 Aligned_cols=173 Identities=8% Similarity=-0.013 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC-
Q 043144 377 MDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGK----------VDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVG- 445 (580)
Q Consensus 377 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 445 (580)
.++|++.+++++...+. +..+|+.-..++...|+ +++++++++.+.+.+ +.+..+|+.-..++.+.|
T Consensus 45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 46778888888876433 44466666666666666 888899998888766 456778888888888888
Q ss_pred -CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---------
Q 043144 446 -KTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREG-KVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKA--------- 514 (580)
Q Consensus 446 -~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------- 514 (580)
+++++++.++++.+.. +-+...|+.-...+.+.| .++++++.++++.+..+. |...|+....++...
T Consensus 123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccccc
Confidence 6799999999998875 347788888888888888 889999999999887766 788888877777663
Q ss_pred -----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 043144 515 -----RQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKE 554 (580)
Q Consensus 515 -----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 554 (580)
+.++++++.+++++... |.+...|..+...+.+.|+.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 55789999999998774 7778899988888887777544
No 189
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.22 E-value=3.4e-06 Score=79.93 Aligned_cols=154 Identities=12% Similarity=-0.041 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043144 396 IVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGG 475 (580)
Q Consensus 396 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 475 (580)
...+..+...+.+.|++++|...|++..... |+... +...|+.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 4466777777888888888888888877654 33221 223344444433221 1367788889
Q ss_pred HHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhcCCHHH
Q 043144 476 LSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGI-AYEGLAKE 554 (580)
Q Consensus 476 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~ 554 (580)
+.+.|++++|+..++++.+..+. +...|..+..+|...|++++|+..|+++++.. +.+...+..+.... ...+..+.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999876544 78889999999999999999999999987652 44556666666653 45677888
Q ss_pred HHHHHHHHHhCCCCCc
Q 043144 555 ALDLLNQLCSRGVVKK 570 (580)
Q Consensus 555 A~~~~~~~~~~g~~~~ 570 (580)
+.+++++|....+..+
T Consensus 318 a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 318 QKEMYKGIFKGKDEGG 333 (338)
T ss_dssp ----------------
T ss_pred HHHHHHHhhCCCCCCC
Confidence 8899999887665443
No 190
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.20 E-value=5.8e-05 Score=60.63 Aligned_cols=112 Identities=9% Similarity=-0.044 Sum_probs=81.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 043144 445 GKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCK----ARQTYRA 520 (580)
Q Consensus 445 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 520 (580)
+++++|++.|++..+.+ .|+.. |...|...+.+++|.+.|++..+.+ +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 35677788888777776 33333 6666667777777888888887754 56667777777777 6788888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCC
Q 043144 521 IDILADMVTRSCKPTEATYTILIEGIAY----EGLAKEALDLLNQLCSRGV 567 (580)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~ 567 (580)
.+++++..+.| ++..+..|...|.. .++.++|.+++++..+.|.
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 88888887764 56777777777777 7888888888888887763
No 191
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.18 E-value=1.3e-05 Score=66.70 Aligned_cols=100 Identities=12% Similarity=0.052 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhC--------C---------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 043144 396 IVTYNTLLTALCKDGKVDVAVEILNQLSNK--------H---------CSPVLITYNTVIDGLSKVGKTEQAMKLLEEMR 458 (580)
Q Consensus 396 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 458 (580)
...+......+.+.|++++|...|...... . .+.+...|..+..+|.+.|++++|+..+++.+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 346677777788888888888888877654 1 01123567777777888888888888888887
Q ss_pred HCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 043144 459 TKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLG 496 (580)
Q Consensus 459 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 496 (580)
... +.+...|..+..++...|++++|...|+++.+..
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 754 3456777778888888888888888888887654
No 192
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.15 E-value=9.4e-06 Score=77.73 Aligned_cols=93 Identities=13% Similarity=0.007 Sum_probs=49.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhC---------------CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 043144 87 SNNHLRRLVRNGELEEGFKFLESMVYH---------------GDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAV 151 (580)
Q Consensus 87 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 151 (580)
+..+...+.+.|++++|+..|++++.. ..+.+..+|..+..+|.+.|++++|+..++++++.. +
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 304 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-P 304 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-T
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-c
Confidence 566777888888888888888887752 011122344444444444444444444444444433 3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHc
Q 043144 152 PDVITYNVLISGYCRLGEIDNALQVLERM 180 (580)
Q Consensus 152 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 180 (580)
.+...+..++.+|...|++++|+..|+++
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~A 333 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKA 333 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 33444444444444444444444444443
No 193
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.13 E-value=1.7e-05 Score=64.16 Aligned_cols=63 Identities=13% Similarity=0.081 Sum_probs=43.6
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHHhCCCC-C-----Ch-----hhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 043144 86 ESNNHLRRLVRNGELEEGFKFLESMVYHGDI-P-----DI-----IPCTSLIRGFCKVGKTRKATRVMEIVEDS 148 (580)
Q Consensus 86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~-----~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 148 (580)
.+......+...|++++|+..|+++++..+. | +. ..|..+..++.+.|++++|+..+++.++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l 86 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY 86 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 5677788889999999999999999876322 1 12 25666666666666666666666665543
No 194
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.11 E-value=7e-06 Score=77.72 Aligned_cols=92 Identities=15% Similarity=0.086 Sum_probs=52.4
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChh------------------hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 043144 86 ESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDII------------------PCTSLIRGFCKVGKTRKATRVMEIVED 147 (580)
Q Consensus 86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------------------~~~~l~~~~~~~g~~~~A~~~~~~~~~ 147 (580)
.+..+...+.+.|++++|+..|++++... |+.. .|..+..+|.+.|++++|+..+++.+.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45666777888999999999999988752 2222 344444444455555555555554444
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc
Q 043144 148 SGAVPDVITYNVLISGYCRLGEIDNALQVLERM 180 (580)
Q Consensus 148 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 180 (580)
.. +.+...|..++.+|...|++++|+..|+++
T Consensus 259 ~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~a 290 (338)
T 2if4_A 259 EE-EKNPKALFRRGKAKAELGQMDSARDDFRKA 290 (338)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33 334444444445555555555555555444
No 195
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.08 E-value=0.00018 Score=72.88 Aligned_cols=161 Identities=12% Similarity=0.063 Sum_probs=135.2
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC
Q 043144 411 KVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGK----------TEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREG 480 (580)
Q Consensus 411 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 480 (580)
..++|++.++.+...+ +.+...|+.-..++...|+ ++++++.++.+.+.. +-+..+|..-...+.+.|
T Consensus 44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 4467899999999876 3456778877777777777 899999999999875 347888988888889999
Q ss_pred --CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--------
Q 043144 481 --KVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKAR-QTYRAIDILADMVTRSCKPTEATYTILIEGIAYE-------- 549 (580)
Q Consensus 481 --~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------- 549 (580)
++++++..++++.+..++ +..+|+.-..++...| .++++++.++++++.. +.+...|.....++...
T Consensus 122 ~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccc
Confidence 779999999999988766 8999999888889999 8999999999999874 77889999888887663
Q ss_pred ------CCHHHHHHHHHHHHhCCCCCchhHHH
Q 043144 550 ------GLAKEALDLLNQLCSRGVVKKSSAEQ 575 (580)
Q Consensus 550 ------g~~~~A~~~~~~~~~~g~~~~~~~~~ 575 (580)
+.++++.+++++++...+.-.+.+.+
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y 231 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFY 231 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHHH
Confidence 56899999999999988777766654
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.01 E-value=6e-06 Score=63.46 Aligned_cols=95 Identities=14% Similarity=0.104 Sum_probs=65.0
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC------HHH
Q 043144 465 DTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPT------EAT 538 (580)
Q Consensus 465 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~ 538 (580)
+...+..+...+...|++++|...|+++.+..+. +...|..+..+|...|++++|++.++++++.. +.+ ...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHH
Confidence 4456666777777778888888888877765443 56777777777888888888888888877542 333 556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 043144 539 YTILIEGIAYEGLAKEALDLLNQ 561 (580)
Q Consensus 539 ~~~l~~~~~~~g~~~~A~~~~~~ 561 (580)
+..+..++...|+++.|.+.+++
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHhHhhhHhHHHH
Confidence 66667777777766666554443
No 197
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.97 E-value=7.6e-05 Score=59.93 Aligned_cols=110 Identities=10% Similarity=-0.026 Sum_probs=67.9
Q ss_pred ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHH
Q 043144 99 ELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCR----LGEIDNAL 174 (580)
Q Consensus 99 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 174 (580)
++++|+++|+++.+.|. ++ .. +...|...+.+++|.++|++..+.| ++..+..|..+|.. .+++++|+
T Consensus 10 d~~~A~~~~~~aa~~g~-~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNE-MF--GC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTC-TT--HH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCC-Hh--hh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 56677777777776652 22 22 5556666666677777777776654 55666666666666 56666777
Q ss_pred HHHHHcCCCCCcchHHHHHHHHHh----cCChhHHHHHHHHHHhCC
Q 043144 175 QVLERMSVAPDVVTYNTILRTLCD----SGKLNLAMEVLHKQLEKE 216 (580)
Q Consensus 175 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 216 (580)
++|++.-...+...+..|...|.. .+++++|...|++..+.|
T Consensus 82 ~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 766666222445556666666665 566666666666665554
No 198
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.96 E-value=1.1e-05 Score=62.02 Aligned_cols=93 Identities=9% Similarity=0.100 Sum_probs=66.0
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC------HHHHHH
Q 043144 86 ESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPD------VITYNV 159 (580)
Q Consensus 86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~ 159 (580)
.+..+...+...|++++|+..|++++.. .|.+...+..+..++.+.|++++|...|++..... +.+ ...+..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITA-QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHHHHH
Confidence 5666777778888888888888888776 34566777777888888888888888888877664 333 455666
Q ss_pred HHHHHHhcCChhHHHHHHHHc
Q 043144 160 LISGYCRLGEIDNALQVLERM 180 (580)
Q Consensus 160 l~~~~~~~g~~~~A~~~~~~~ 180 (580)
+..++...|+++.|+..++++
T Consensus 84 ~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHhHhhhHhHHHHh
Confidence 666666677766666655544
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.96 E-value=5.4e-05 Score=58.56 Aligned_cols=80 Identities=11% Similarity=0.069 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043144 449 QAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMV 528 (580)
Q Consensus 449 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 528 (580)
+|+..|++..+.. +.+...+..+...+...|++++|...|+++.+..+. +...|..+..+|...|++++|...+++.+
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4667777777653 345677777788888888888888888888765543 56677778888888888888888888776
Q ss_pred Hc
Q 043144 529 TR 530 (580)
Q Consensus 529 ~~ 530 (580)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.95 E-value=2.7e-05 Score=60.34 Aligned_cols=78 Identities=14% Similarity=0.065 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc
Q 043144 101 EEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM 180 (580)
Q Consensus 101 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 180 (580)
++|+..|++++.. .|.+...+..+...|...|++++|...|++..... +.+...|..++.+|...|++++|+..|++.
T Consensus 2 ~~a~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLAQ-GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHTT-TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3577788888776 45567788888888888888888888888888765 556778888888888888888888888876
No 201
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.90 E-value=0.00016 Score=52.79 Aligned_cols=82 Identities=15% Similarity=0.143 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043144 466 TITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEG 545 (580)
Q Consensus 466 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 545 (580)
...+..+...+...|++++|...+++..+..+. +...+..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 345566666667777777777777776654433 55666677777777777777777777776653 4456666666666
Q ss_pred HHhc
Q 043144 546 IAYE 549 (580)
Q Consensus 546 ~~~~ 549 (580)
+...
T Consensus 87 ~~~~ 90 (91)
T 1na3_A 87 KQKQ 90 (91)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5544
No 202
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.85 E-value=2.4e-05 Score=63.16 Aligned_cols=97 Identities=14% Similarity=-0.003 Sum_probs=70.4
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh----------HHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 043144 94 LVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKT----------RKATRVMEIVEDSGAVPDVITYNVLISG 163 (580)
Q Consensus 94 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (580)
..+.+++++|++.++.++.. .|.+...|+.+..++...|++ ++|+..|++.++.. |.+..+|..++.+
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l-~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~a 89 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKS-NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHH
Confidence 34556788999999998887 466778888888888888765 48888888888876 5577788888888
Q ss_pred HHhcC-----------ChhHHHHHHHHc-CCCCCcchHHHH
Q 043144 164 YCRLG-----------EIDNALQVLERM-SVAPDVVTYNTI 192 (580)
Q Consensus 164 ~~~~g-----------~~~~A~~~~~~~-~~~~~~~~~~~l 192 (580)
|...| ++++|++.|+++ .+.|+...|..-
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~a 130 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKS 130 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 87764 677777777766 445555444333
No 203
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.84 E-value=3.8e-05 Score=75.87 Aligned_cols=122 Identities=10% Similarity=0.023 Sum_probs=69.9
Q ss_pred HHhcCChHHHHHHHHHHHhC-----C--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHc--------C-CCCC-cchHHH
Q 043144 129 FCKVGKTRKATRVMEIVEDS-----G--AVPDVITYNVLISGYCRLGEIDNALQVLERM--------S-VAPD-VVTYNT 191 (580)
Q Consensus 129 ~~~~g~~~~A~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~-~~~~-~~~~~~ 191 (580)
+..+|++++|..++++..+. | .+....+++.|+..|...|++++|..+++++ | ..|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44566666666666655432 1 0112345666666666666666666666654 1 1122 335667
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC-----CCC-C-ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 043144 192 ILRTLCDSGKLNLAMEVLHKQLEK-----ECY-P-DVITYTILIEATCKESGVGQAMKLLDEMRNK 250 (580)
Q Consensus 192 l~~~~~~~g~~~~A~~~~~~~~~~-----~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 250 (580)
|+..|...|++++|..+++++++. |.. | ...+...+...+...+.+.+|+.+|..+++.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777776666532 211 1 1223445556666777788888888777653
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.81 E-value=0.00018 Score=52.57 Aligned_cols=80 Identities=11% Similarity=0.074 Sum_probs=53.3
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043144 86 ESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYC 165 (580)
Q Consensus 86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 165 (580)
.+..+...+...|++++|+..|++++.. .+.+..++..+..++.+.|++++|...|++..... |.+...+..+..++.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALEL-DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 4556667777777777777777777665 34455666777777777777777777777776654 445666666666554
Q ss_pred hc
Q 043144 166 RL 167 (580)
Q Consensus 166 ~~ 167 (580)
..
T Consensus 89 ~~ 90 (91)
T 1na3_A 89 KQ 90 (91)
T ss_dssp HH
T ss_pred hc
Confidence 43
No 205
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.77 E-value=0.00013 Score=72.12 Aligned_cols=97 Identities=8% Similarity=-0.037 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHh-----CCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCC--
Q 043144 468 TYSSLVGGLSREGKVDEAIKLFHDLER-----LGVR-PN-VITYNSIMLGLCKARQTYRAIDILADMVTR---SCKPT-- 535 (580)
Q Consensus 468 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~-~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~-- 535 (580)
+++.|..+|...|++++|..+++++.+ .|.. |+ ..+++.|+..|...|++++|..+++++++- -+.|+
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp 432 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHP 432 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 455555555555555555555555431 2221 11 234555566666666666666666555421 11111
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043144 536 --EATYTILIEGIAYEGLAKEALDLLNQLCS 564 (580)
Q Consensus 536 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (580)
..+...+..++...|++++|..+++++.+
T Consensus 433 ~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 433 ITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22334444555556666666666666544
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.71 E-value=0.0001 Score=59.46 Aligned_cols=87 Identities=15% Similarity=0.030 Sum_probs=62.7
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH----------HHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043144 442 SKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKV----------DEAIKLFHDLERLGVRPNVITYNSIMLGL 511 (580)
Q Consensus 442 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 511 (580)
.+.+.+++|.+.++..++.. +.+...|..+..++...+++ ++|+..|+++++.++. +..+|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH
Confidence 45566788888888877764 34677777777777776654 4788888888776554 667777788887
Q ss_pred HhcC-----------CHHHHHHHHHHHHHc
Q 043144 512 CKAR-----------QTYRAIDILADMVTR 530 (580)
Q Consensus 512 ~~~g-----------~~~~A~~~~~~~~~~ 530 (580)
...| ++++|++.|+++++.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 7664 677788888777765
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.70 E-value=9.2e-05 Score=55.55 Aligned_cols=62 Identities=23% Similarity=0.200 Sum_probs=34.2
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc
Q 043144 118 DIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM 180 (580)
Q Consensus 118 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 180 (580)
+...+..+..+|.+.|++++|+..|+++.+.. |.+...|..++.+|...|++++|++.|++.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44455555555555555555555555555544 334445555555555555555555555544
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.62 E-value=0.00036 Score=52.21 Aligned_cols=65 Identities=23% Similarity=0.189 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043144 465 DTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTR 530 (580)
Q Consensus 465 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 530 (580)
+...+..+...+...|++++|+..|+++.+..+. +...|..+..+|...|++++|++.+++.++.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5667778888888888888888888888776544 5667788888888888888888888887643
No 209
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.34 E-value=0.0024 Score=46.69 Aligned_cols=68 Identities=13% Similarity=0.016 Sum_probs=31.4
Q ss_pred CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 043144 500 NVITYNSIMLGLCKARQ---TYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGVV 568 (580)
Q Consensus 500 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 568 (580)
+...+..+..++...++ .++|..++++.++.. +.+...+..++..+.+.|++++|+..|+++.+..+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 34444444444433222 345555555554442 334444444555555555555555555555544433
No 210
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.27 E-value=0.00079 Score=50.06 Aligned_cols=82 Identities=12% Similarity=0.152 Sum_probs=54.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCChh-hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 043144 89 NHLRRLVRNGELEEGFKFLESMVYHGDIPDII-PCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRL 167 (580)
Q Consensus 89 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 167 (580)
.....+...|++++|+..|++++.. .+.+.. .+..+..+|...|++++|...|++..+.. +.+...+..
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~-------- 74 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQT-EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN-PDSPALQAR-------- 74 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH-CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH--------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHH--------
Confidence 3456677788888888888888775 344556 77777888888888888888888877765 333333311
Q ss_pred CChhHHHHHHHHc
Q 043144 168 GEIDNALQVLERM 180 (580)
Q Consensus 168 g~~~~A~~~~~~~ 180 (580)
+.+.++...|++.
T Consensus 75 ~~~~~a~~~~~~~ 87 (99)
T 2kc7_A 75 KMVMDILNFYNKD 87 (99)
T ss_dssp HHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHHH
Confidence 3445555555554
No 211
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.25 E-value=0.00037 Score=51.91 Aligned_cols=57 Identities=11% Similarity=0.137 Sum_probs=35.8
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043144 473 VGGLSREGKVDEAIKLFHDLERLGVRPNVI-TYNSIMLGLCKARQTYRAIDILADMVTR 530 (580)
Q Consensus 473 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 530 (580)
...+...|++++|...++++.+..+. +.. .+..++.+|...|++++|++.++++++.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34555666666666666666654433 445 6666666666667777777777666655
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.19 E-value=0.0051 Score=57.17 Aligned_cols=152 Identities=12% Similarity=-0.003 Sum_probs=76.1
Q ss_pred CCCChhhHHHHHHHH--HhcCC---hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcCCCCCcchH
Q 043144 115 DIPDIIPCTSLIRGF--CKVGK---TRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERMSVAPDVVTY 189 (580)
Q Consensus 115 ~~~~~~~~~~l~~~~--~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 189 (580)
.+.+...|...+++. ...++ ..+|..+|++.++.. |.....|..+..+|.. ....+ +.+....
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~----------~~~~~-~~~~~~~ 257 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIV----------RHSQH-PLDEKQL 257 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH----------HHHHS-CCCHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH----------HhccC-CCchhhH
Confidence 455666777666553 33333 468888899888876 4455566655555541 00001 0000000
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc
Q 043144 190 NTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKE 269 (580)
Q Consensus 190 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 269 (580)
..+ ..+...... .. ..+.+..++..+...+...|++++|...+++++..+ |+...|..+...+.-.
T Consensus 258 ~~l----------~~a~~a~~a-~~-~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~ 323 (372)
T 3ly7_A 258 AAL----------NTEIDNIVT-LP-ELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMK 323 (372)
T ss_dssp HHH----------HHHHHHHHT-CG-GGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHT
T ss_pred HHH----------HHHHHHHHh-cc-cCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHC
Confidence 000 111110000 01 113345555555555555566666666666666653 4555555556666666
Q ss_pred CCHHHHHHHHHHhhhCCCCCCHHHH
Q 043144 270 GRLDEAIKFLNDMPSYGCQPNVITH 294 (580)
Q Consensus 270 g~~~~A~~~~~~~~~~~~~~~~~~~ 294 (580)
|++++|.+.|++.... .|...+|
T Consensus 324 G~~~eA~e~~~~AlrL--~P~~~t~ 346 (372)
T 3ly7_A 324 GMNREAADAYLTAFNL--RPGANTL 346 (372)
T ss_dssp TCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred CCHHHHHHHHHHHHhc--CCCcChH
Confidence 6666666666665554 3444443
No 213
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.10 E-value=0.0096 Score=55.38 Aligned_cols=65 Identities=14% Similarity=0.090 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043144 500 NVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRG 566 (580)
Q Consensus 500 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 566 (580)
+..+|..+...+...|++++|...+++++..+ |+...|..++..+.-.|++++|.+.++++...+
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 44445444444444455555555555555443 444444455555555555555555555555544
No 214
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.05 E-value=0.00078 Score=63.93 Aligned_cols=231 Identities=12% Similarity=0.039 Sum_probs=147.7
Q ss_pred cccCCCccccccccCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 043144 65 HLNNGHISSGMENSSLNFEDFESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEI 144 (580)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 144 (580)
++..+.+..++..--..-++..|..++....+.|.+++-+++++-+.+. ..++.+=+.|+-+|++.++..+-.+.+
T Consensus 64 qL~~~~v~eAIdsyIkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEefl-- 139 (624)
T 3lvg_A 64 QLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFI-- 139 (624)
T ss_dssp TTTSSSCTTTTTSSCCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTSTT--
T ss_pred HHccCchHHHHHHHHhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHHH--
Confidence 3344444443332222335678889999999999999999988776554 445666778899999999876544433
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc-----------------------CCCCCcchHHHHHHHHHhcCC
Q 043144 145 VEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM-----------------------SVAPDVVTYNTILRTLCDSGK 201 (580)
Q Consensus 145 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----------------------~~~~~~~~~~~l~~~~~~~g~ 201 (580)
. .|++.-...+++-|...|.++.|.-+|..+ ....+..+|..+-.+|...++
T Consensus 140 --~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~E 214 (624)
T 3lvg_A 140 --N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKE 214 (624)
T ss_dssp --S---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCT
T ss_pred --c---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchH
Confidence 1 355555566788888888888888777765 113456788888888888888
Q ss_pred hhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 043144 202 LNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLND 281 (580)
Q Consensus 202 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 281 (580)
+..|.-.--.++-. ..-...++..|-..|-+++-+.+++...... ......|+-|.-.|++- +.++..+.++.
T Consensus 215 frLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlkl 287 (624)
T 3lvg_A 215 FRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLEL 287 (624)
T ss_dssp TTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTT
T ss_pred HHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHH
Confidence 87775443333321 2223346667778888888888888876432 23566777777777765 34555554443
Q ss_pred hhh-CCCCC------CHHHHHHHHHHHHhcCChHHHH
Q 043144 282 MPS-YGCQP------NVITHNIILRSMCSTGRWMDAE 311 (580)
Q Consensus 282 ~~~-~~~~~------~~~~~~~ll~~~~~~~~~~~a~ 311 (580)
.-. .+++. ....|.-++..|..-.+++.|.
T Consensus 288 f~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 288 FWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp SSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 221 12211 2344666666677667776654
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.00 E-value=0.0037 Score=60.61 Aligned_cols=86 Identities=9% Similarity=-0.008 Sum_probs=40.4
Q ss_pred hCCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHh-----CCCC-CC-HHHHHHHH
Q 043144 443 KVGKTEQAMKLLEEMRTK---GLKPD----TITYSSLVGGLSREGKVDEAIKLFHDLER-----LGVR-PN-VITYNSIM 508 (580)
Q Consensus 443 ~~g~~~~A~~~~~~m~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~-~~-~~~~~~l~ 508 (580)
..|++++|..++++.++. -+.|+ ..+++.|..+|...|++++|+.+++++.. .|.. |+ ..+++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 345555555555554431 11111 23455555555555555555555555431 2211 11 22345555
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 043144 509 LGLCKARQTYRAIDILADMV 528 (580)
Q Consensus 509 ~~~~~~g~~~~A~~~~~~~~ 528 (580)
..|...|++++|..++++++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHH
Confidence 55555555555555555554
No 216
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.96 E-value=0.0055 Score=48.84 Aligned_cols=82 Identities=13% Similarity=0.127 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 043144 447 TEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREG---KVDEAIKLFHDLERLGVRP--NVITYNSIMLGLCKARQTYRAI 521 (580)
Q Consensus 447 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~ 521 (580)
...+.+-|.+....+ .++..+...+..++++.+ ++++++.+|++..+.. .| +...+..|..+|.+.|++++|+
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 344555555555544 355666666666666666 4556666666665543 12 2344445555666666666666
Q ss_pred HHHHHHHHc
Q 043144 522 DILADMVTR 530 (580)
Q Consensus 522 ~~~~~~~~~ 530 (580)
+.++.+++.
T Consensus 92 ~y~~~lL~i 100 (152)
T 1pc2_A 92 KYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 666666654
No 217
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.90 E-value=0.05 Score=58.11 Aligned_cols=156 Identities=15% Similarity=0.165 Sum_probs=102.7
Q ss_pred HHHHHHcCChHHHHH-HHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 043144 91 LRRLVRNGELEEGFK-FLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGE 169 (580)
Q Consensus 91 ~~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 169 (580)
.......+++++|.+ ++..+ ++......++..+.+.|..+.|.++.+ +.. .-.......|+
T Consensus 606 ~~~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~---------~~~---~~f~~~l~~~~ 667 (814)
T 3mkq_A 606 FQTLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISP---------DQD---QKFELALKVGQ 667 (814)
T ss_dssp HHHHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCC---------CHH---HHHHHHHHHTC
T ss_pred HhHHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCC---------Ccc---hheehhhhcCC
Confidence 345567889999877 55221 112223677788889999999887663 111 11344567899
Q ss_pred hhHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 043144 170 IDNALQVLERMSVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRN 249 (580)
Q Consensus 170 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 249 (580)
+++|+++.+.+ .+...|..++..+.+.|+++.|.+.|.++.+ |..+...+...|+.+...++-+....
T Consensus 668 ~~~A~~~~~~~---~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 668 LTLARDLLTDE---SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp HHHHHHHHTTC---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhh---CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999998766 4678999999999999999999999987643 34555556666666665555554444
Q ss_pred cCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHh
Q 043144 250 KGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDM 282 (580)
Q Consensus 250 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 282 (580)
.| -++.-..+|.+.|++++|+++|.++
T Consensus 736 ~~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 736 TG------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp TT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred cC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 32 1233334455566666666665544
No 218
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.90 E-value=3e-05 Score=73.27 Aligned_cols=245 Identities=9% Similarity=0.036 Sum_probs=147.9
Q ss_pred CcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043144 83 EDFESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLIS 162 (580)
Q Consensus 83 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 162 (580)
.+..|..+..+....|+..+|++-|-++ .|...|..++.++.+.|.+++-.+.+...++. ..++.+=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHH
Confidence 3468899999999999999998766332 36667888999999999999999999877765 345555668999
Q ss_pred HHHhcCChhHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC--------------------CCCChh
Q 043144 163 GYCRLGEIDNALQVLERMSVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKE--------------------CYPDVI 222 (580)
Q Consensus 163 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------------------~~~~~~ 222 (580)
+|++.++..+-.+++. .||..-...++.-|...|.++.|.-+|..+.... -..+..
T Consensus 125 ayAk~~rL~elEefl~----~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~k 200 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTR 200 (624)
T ss_dssp HHHTSCSSSTTTSTTS----CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSC
T ss_pred HHHhhCcHHHHHHHHc----CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 9999988765444332 4676667778888888888888777665432210 012455
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 043144 223 TYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMC 302 (580)
Q Consensus 223 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 302 (580)
+|..+-.+|...+.+.-|.-.--.+.-. ..-...++..|-..|.+++-+.+++.-.... ......++-|.-.|+
T Consensus 201 tWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYs 274 (624)
T 3lvg_A 201 TWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYS 274 (624)
T ss_dssp SHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHH
Confidence 6666666666666665554433333211 1122234445566666666666666554322 334455555555554
Q ss_pred hcCChHHHHHHHHHHHHc-CCC------CChhhHHHHHHHHHhcCCHHHHH
Q 043144 303 STGRWMDAERLLAEMVLK-GCS------PSVVTFNILINFLCRKGLLGRAI 346 (580)
Q Consensus 303 ~~~~~~~a~~~~~~~~~~-~~~------~~~~~~~~l~~~~~~~g~~~~a~ 346 (580)
+- +.++..+.++....+ +++ .....|..+.-.|.+-.+++.|.
T Consensus 275 KY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 275 KF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp SS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred hc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 43 333333333322111 111 12345666666666666666554
No 219
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.88 E-value=0.014 Score=42.58 Aligned_cols=63 Identities=6% Similarity=-0.021 Sum_probs=34.3
Q ss_pred CChhhHHHHHHHHHhcCC---hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc
Q 043144 117 PDIIPCTSLIRGFCKVGK---TRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM 180 (580)
Q Consensus 117 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 180 (580)
++...+..+..++...++ .++|..++++....+ |.++.....++..+.+.|++++|+..|+++
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~ 69 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLL 69 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344455555555543333 455666666555554 445555555555555566666666665555
No 220
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.83 E-value=0.011 Score=57.37 Aligned_cols=93 Identities=13% Similarity=-0.009 Sum_probs=48.8
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCC---CCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHh-----CCCC-CC-HHH
Q 043144 438 IDGLSKVGKTEQAMKLLEEMRTKG---LKPD----TITYSSLVGGLSREGKVDEAIKLFHDLER-----LGVR-PN-VIT 503 (580)
Q Consensus 438 ~~~~~~~g~~~~A~~~~~~m~~~~---~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~-~~-~~~ 503 (580)
+..+...|++++|..++++.++.. +.|+ ..+++.++.+|...|++++|+.+++++.. .|.. |+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 333445566666666666665431 1111 23455566666666666666666665532 2211 21 234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043144 504 YNSIMLGLCKARQTYRAIDILADMVTR 530 (580)
Q Consensus 504 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 530 (580)
++.|+..|...|++++|..+++++++-
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 555666666666666666666666543
No 221
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.77 E-value=0.002 Score=62.56 Aligned_cols=82 Identities=7% Similarity=0.039 Sum_probs=38.0
Q ss_pred cCChHHHHHHHHHHHhC---CCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHc--------C-CCCC-cchHHHHHH
Q 043144 132 VGKTRKATRVMEIVEDS---GAVP----DVITYNVLISGYCRLGEIDNALQVLERM--------S-VAPD-VVTYNTILR 194 (580)
Q Consensus 132 ~g~~~~A~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~-~~~~-~~~~~~l~~ 194 (580)
.|++++|..++++..+. -+.+ ...+++.|+.+|...|++++|+.+++++ | ..|+ ..+++.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 35555666555554431 0111 1234555555555555555555555544 1 1111 223445555
Q ss_pred HHHhcCChhHHHHHHHHHH
Q 043144 195 TLCDSGKLNLAMEVLHKQL 213 (580)
Q Consensus 195 ~~~~~g~~~~A~~~~~~~~ 213 (580)
.|...|++++|..++++++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 5555555555555544443
No 222
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.75 E-value=0.067 Score=57.11 Aligned_cols=153 Identities=19% Similarity=0.160 Sum_probs=93.4
Q ss_pred HHhcCChhHHHH-HHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHH
Q 043144 164 YCRLGEIDNALQ-VLERMSVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMK 242 (580)
Q Consensus 164 ~~~~g~~~~A~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 242 (580)
....+++++|.+ ++..+ ++......++..+.+.|..++|+++.+. . ..-.......|++++|.+
T Consensus 609 ~~~~~~~~~a~~~~l~~i---~~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~---~~~f~~~l~~~~~~~A~~ 673 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNV---EGKDSLTKIARFLEGQEYYEEALNISPD---------Q---DQKFELALKVGQLTLARD 673 (814)
T ss_dssp HHHTTCHHHHHHHTGGGC---CCHHHHHHHHHHHHHTTCHHHHHHHCCC---------H---HHHHHHHHHHTCHHHHHH
T ss_pred HHHhCCHHHHHHHHHhcC---CchHHHHHHHHHHHhCCChHHheecCCC---------c---chheehhhhcCCHHHHHH
Confidence 345778888877 55332 2122336777777888888888765421 1 111334556788888888
Q ss_pred HHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 043144 243 LLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGC 322 (580)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 322 (580)
+.+.+ .+...|..+...+.+.|+++.|.+.|.++.. |..+...+...++.+...++.+.....|
T Consensus 674 ~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~- 737 (814)
T 3mkq_A 674 LLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG- 737 (814)
T ss_dssp HHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT-
T ss_pred HHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC-
Confidence 76433 3678888888888889999988888887753 3344445555666666555554444432
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHh
Q 043144 323 SPSVVTFNILINFLCRKGLLGRAIDILEKM 352 (580)
Q Consensus 323 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 352 (580)
-++....+|.+.|++++|.+++.++
T Consensus 738 -----~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 738 -----KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp -----CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred -----chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 1233334455556666666655443
No 223
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.69 E-value=0.0075 Score=58.54 Aligned_cols=88 Identities=15% Similarity=0.103 Sum_probs=56.4
Q ss_pred HHHHhcCChHHHHHHHHHHHhCC---CC----CCHHHHHHHHHHHHhcCChhHHHHHHHHc---------CCCCC-cchH
Q 043144 127 RGFCKVGKTRKATRVMEIVEDSG---AV----PDVITYNVLISGYCRLGEIDNALQVLERM---------SVAPD-VVTY 189 (580)
Q Consensus 127 ~~~~~~g~~~~A~~~~~~~~~~~---~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~~~-~~~~ 189 (580)
..+.++|++++|..++++..+.. +. ....+++.|+..|...|++++|+.+++++ +..|+ ..++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 33556677777777777766431 11 12345667777777777777777777765 11222 3357
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHh
Q 043144 190 NTILRTLCDSGKLNLAMEVLHKQLE 214 (580)
Q Consensus 190 ~~l~~~~~~~g~~~~A~~~~~~~~~ 214 (580)
+.|+..|...|++++|..+++++++
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 7777778888888887777777654
No 224
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.63 E-value=0.17 Score=45.04 Aligned_cols=66 Identities=6% Similarity=-0.028 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCC
Q 043144 503 TYNSIMLGLCKA-----RQTYRAIDILADMVTRSCKPTEATYTILIEGIAYE-GLAKEALDLLNQLCSRGVV 568 (580)
Q Consensus 503 ~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~g~~ 568 (580)
.|..++..|... |+.++|.+.|+++++.+-.-+..++..+++.++.. |+.++|.+++++.++..+.
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 444444444442 45555555555554432111244444444444442 4455555555555444443
No 225
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.62 E-value=0.17 Score=41.45 Aligned_cols=100 Identities=14% Similarity=0.230 Sum_probs=52.2
Q ss_pred HhcCChhHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHH
Q 043144 165 CRLGEIDNALQVLERMSVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLL 244 (580)
Q Consensus 165 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 244 (580)
.+.|+++.|.++.+.+ .+...|..|+......|+++-|...|.+..+ +..+.-.|.-.|+.+.-.++-
T Consensus 16 L~lg~l~~A~e~a~~l---~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL---NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHTTCHHHHHHHHHHH---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHh---CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence 4455555555555544 2344556666666666666666555554422 233444455555555555444
Q ss_pred HHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHh
Q 043144 245 DEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDM 282 (580)
Q Consensus 245 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 282 (580)
+.....| -++.....+...|+++++.++|.+.
T Consensus 84 ~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 84 NIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 4443332 2333444455566666666666554
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.48 E-value=0.017 Score=43.22 Aligned_cols=71 Identities=8% Similarity=-0.033 Sum_probs=48.4
Q ss_pred ccHHHHHHHHHHcCChHHHHHHHHHHHhCC------CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 043144 85 FESNNHLRRLVRNGELEEGFKFLESMVYHG------DIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVIT 156 (580)
Q Consensus 85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 156 (580)
..|..+...+...|++..|...|+.++... ..+...++..+..++.+.|+++.|...++++.+.. |.+..+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~-P~~~~~ 82 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-PEHQRA 82 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHH
Confidence 356677888888888888888888876541 12334566777777777777777777777777654 334433
No 227
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.40 E-value=0.22 Score=44.34 Aligned_cols=85 Identities=11% Similarity=0.125 Sum_probs=53.9
Q ss_pred hhHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHh-----cCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc-CCH
Q 043144 202 LNLAMEVLHKQLEKECYPD---VITYTILIEATCK-----ESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKE-GRL 272 (580)
Q Consensus 202 ~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~ 272 (580)
...|...++++++.. |+ ...|..+...|.+ -|+.++|.+.|++.++.+..-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 345666666666643 43 4466667777776 377777777777777764332466666666766663 777
Q ss_pred HHHHHHHHHhhhCCCC
Q 043144 273 DEAIKFLNDMPSYGCQ 288 (580)
Q Consensus 273 ~~A~~~~~~~~~~~~~ 288 (580)
+++.+.+++..+....
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 7777777777665433
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.36 E-value=0.036 Score=44.11 Aligned_cols=82 Identities=15% Similarity=0.092 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHH
Q 043144 483 DEAIKLFHDLERLGVRPNVITYNSIMLGLCKAR---QTYRAIDILADMVTRSCKP--TEATYTILIEGIAYEGLAKEALD 557 (580)
Q Consensus 483 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~ 557 (580)
..+.+.|.+....+. ++..+...+.+++++++ +.++++.++++..+.. .| ....+..|+-+|.+.|++++|++
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 344444444444443 35555555555666555 4445666666655542 22 24455555555566666666666
Q ss_pred HHHHHHhCC
Q 043144 558 LLNQLCSRG 566 (580)
Q Consensus 558 ~~~~~~~~g 566 (580)
+++++++..
T Consensus 93 y~~~lL~ie 101 (152)
T 1pc2_A 93 YVRGLLQTE 101 (152)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhcC
Confidence 666665544
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.35 E-value=0.036 Score=41.34 Aligned_cols=73 Identities=7% Similarity=-0.042 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 043144 465 DTITYSSLVGGLSREGKVDEAIKLFHDLERLG------VRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEAT 538 (580)
Q Consensus 465 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 538 (580)
+..-...+...+...|+++.|...|+.+.+.. ..+...++..|..+|.+.|++++|+.+++++++.. |.+..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~-P~~~~~ 82 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-PEHQRA 82 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHH
Confidence 44555677888888999999999988876421 12346778888888999999999999998888752 334444
No 230
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.33 E-value=0.027 Score=44.12 Aligned_cols=58 Identities=17% Similarity=0.071 Sum_probs=38.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchh
Q 043144 514 ARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGVVKKSS 572 (580)
Q Consensus 514 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~ 572 (580)
.++.++|.++|+.+++.+-.. ...|...+.--.++|+.+.|++++.+.+..++++..-
T Consensus 73 i~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred hcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 367777777777776543222 6666666666677777777777777777776655433
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.17 E-value=0.059 Score=42.27 Aligned_cols=102 Identities=9% Similarity=0.066 Sum_probs=54.5
Q ss_pred CCCHHHHHHHHHHHHhcCCh------hHHHHHHHHc--CCCCCcc-hHHHHHHHH------HhcCChhHHHHHHHHHHhC
Q 043144 151 VPDVITYNVLISGYCRLGEI------DNALQVLERM--SVAPDVV-TYNTILRTL------CDSGKLNLAMEVLHKQLEK 215 (580)
Q Consensus 151 ~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~--~~~~~~~-~~~~l~~~~------~~~g~~~~A~~~~~~~~~~ 215 (580)
+.|..+|-..+....+.|++ ++.+++|+++ .+||+.. .|...|..+ ...++.++|.++|+.+++.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 44555666666666555666 5666666665 3344321 122211111 1235666666666666544
Q ss_pred CCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC
Q 043144 216 ECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCI 253 (580)
Q Consensus 216 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 253 (580)
. +--...|......-.++|++..|.+++...+..+..
T Consensus 90 h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 90 C-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp C-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred h-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 2 112445555555566677777777777776666544
No 232
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.11 E-value=0.45 Score=38.90 Aligned_cols=101 Identities=11% Similarity=0.078 Sum_probs=59.5
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 043144 231 TCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDA 310 (580)
Q Consensus 231 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 310 (580)
....|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+.-
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 34567777777766554 1566777777777777777777777776653 33344445556666555
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHh
Q 043144 311 ERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKM 352 (580)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 352 (580)
.++-+.....| -++.....+...|+++++.++|.+.
T Consensus 80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 55544444432 2333444455566777776666543
No 233
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.78 E-value=0.46 Score=36.42 Aligned_cols=65 Identities=14% Similarity=0.181 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 043144 502 ITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGV 567 (580)
Q Consensus 502 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 567 (580)
......+..+...|.-++-.+++.+++.. -+|++.....++.+|.+.|+..+|.+++.++-++|+
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 34444555556666666666666664332 355666666666666666666666666666666664
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.76 E-value=0.072 Score=40.73 Aligned_cols=82 Identities=15% Similarity=0.122 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHH---HHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 043144 448 EQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDE---AIKLFHDLERLG-VRPNVITYNSIMLGLCKARQTYRAIDI 523 (580)
Q Consensus 448 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~ 523 (580)
..+.+-|.+....| .|+..+--.+..++.+..+... ++.+++.+.+.+ +.-.....-.|+-++.+.|++++|++.
T Consensus 18 ~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 18 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 33444444443333 2444444445555555554333 555555554432 101222333444455555555555555
Q ss_pred HHHHHHc
Q 043144 524 LADMVTR 530 (580)
Q Consensus 524 ~~~~~~~ 530 (580)
++.+++.
T Consensus 97 ~~~lL~~ 103 (126)
T 1nzn_A 97 VRGLLQT 103 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555544
No 235
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.57 E-value=2.9 Score=44.16 Aligned_cols=256 Identities=13% Similarity=0.112 Sum_probs=132.8
Q ss_pred HHHhcCCHHHHHHHHHHhhhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-------CCChhhHHHHHHH
Q 043144 265 GICKEGRLDEAIKFLNDMPSYG--CQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGC-------SPSVVTFNILINF 335 (580)
Q Consensus 265 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~ 335 (580)
+....|+.++++.++......+ -.+....-..+.-+....|...++..++...+...- .+....-.++.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 4456777777877777665421 112223333444455666666677777766665321 0111122222222
Q ss_pred H--HhcCCHHHHHHHHHHhhhCCCCCCHh----hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 043144 336 L--CRKGLLGRAIDILEKMPKHGCTPNSL----SYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKD 409 (580)
Q Consensus 336 ~--~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 409 (580)
. .-.++ +++.+.+..+.... +.. ....+...+.-.|+.+....++..+.+.. .-+..-...+.-++...
T Consensus 463 la~~GS~~-eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 463 LAAMGSAN-IEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINY 537 (963)
T ss_dssp HHSTTCCC-HHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTT
T ss_pred HHhcCCCC-HHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhC
Confidence 2 33344 34455555544431 221 11223344556677777777777666531 11222223333344467
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHH---HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 043144 410 GKVDVAVEILNQLSNKHCSPVLITYN---TVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAI 486 (580)
Q Consensus 410 g~~~~A~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 486 (580)
|+.+.+..+.+.+.... .| ..-|. ++.-+|+..|+.....+++..+.... ..+..-...+.-++...|+.+.+.
T Consensus 538 g~~e~~~~li~~L~~~~-dp-~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 538 GRQELADDLITKMLASD-ES-LLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp TCGGGGHHHHHHHHHCS-CH-HHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred CChHHHHHHHHHHHhCC-CH-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHH
Confidence 88888888888777632 12 22232 23445667888777777888887642 223333333344555567766677
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 043144 487 KLFHDLERLGVRPNVITYNSIMLGLCKARQT-YRAIDILADMVT 529 (580)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~ 529 (580)
+++..+.+.+ .|.+..-..+..+....|.. .+++..+..+..
T Consensus 615 rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 615 RIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 7776665543 34444333444444444443 678888888863
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.69 E-value=0.37 Score=36.80 Aligned_cols=83 Identities=16% Similarity=0.083 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 043144 482 VDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYR---AIDILADMVTRSCKP--TEATYTILIEGIAYEGLAKEAL 556 (580)
Q Consensus 482 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~ 556 (580)
+..+.+-|.+....+. ++..+-..+++++.++.+... ++.++++..+.+ .| .......|+-++.+.|++++|+
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 3444444444443332 455555556666666665444 666666665542 12 2344555566666666666666
Q ss_pred HHHHHHHhCC
Q 043144 557 DLLNQLCSRG 566 (580)
Q Consensus 557 ~~~~~~~~~g 566 (580)
++++.+++..
T Consensus 95 ~~~~~lL~~e 104 (126)
T 1nzn_A 95 KYVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 6666666644
No 237
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.48 E-value=1.2 Score=34.14 Aligned_cols=135 Identities=12% Similarity=0.100 Sum_probs=65.3
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcCCCCCcch---HHHHHHHHHhcCChhHHH
Q 043144 130 CKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERMSVAPDVVT---YNTILRTLCDSGKLNLAM 206 (580)
Q Consensus 130 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~ 206 (580)
.-.|..++..++..+..... +..-+|-+|.-....-+-+-..++++.+|---|... ...++.+|++.+..
T Consensus 18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~~---- 90 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTL---- 90 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCC----
T ss_pred HHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhcch----
Confidence 44566666677666666532 344444445444444455555555555532222211 22333333333322
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 043144 207 EVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYG 286 (580)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 286 (580)
...+...++.....|+-++-.+++..+... .+|++...-.+..+|.+.|+..+|.+++.+.-+.|
T Consensus 91 --------------se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 91 --------------NEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp --------------CHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred --------------HHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 222333344445555555555555554321 23445555555556666666666666555555554
No 238
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.27 E-value=0.45 Score=38.22 Aligned_cols=118 Identities=7% Similarity=-0.017 Sum_probs=68.8
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHHhCC-CCCCh-------hhHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCCHH
Q 043144 86 ESNNHLRRLVRNGELEEGFKFLESMVYHG-DIPDI-------IPCTSLIRGFCKVGKTRKATRVMEIVEDSG--AVPDVI 155 (580)
Q Consensus 86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~ 155 (580)
.+..-+..+...|.++.|.-+.+.++... ..++. .+...+++++...|++..|...|++.++.. .+.+..
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45666889999999999999988865431 22331 356778899999999999999999865421 111111
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 043144 156 TYNVLISGYCRLGEIDNALQVLERMSVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQL 213 (580)
Q Consensus 156 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 213 (580)
+...+. ....... ......+...-..+..+|.+.+++++|+.+++.+.
T Consensus 102 ~~~~~~----~~ss~p~------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 102 VRPSTG----NSASTPQ------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp -------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred cccccc----ccCCCcc------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 111110 0000000 01112344455557777777777777777766543
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.15 E-value=0.23 Score=51.31 Aligned_cols=54 Identities=13% Similarity=0.130 Sum_probs=36.2
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043144 473 VGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADM 527 (580)
Q Consensus 473 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 527 (580)
...|...|+++.|+.+-+++....+. +..+|..|+.+|...|+++.|+-.+..+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 33455667777777777777665433 5677777777777777777777766655
No 240
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.13 E-value=0.68 Score=35.53 Aligned_cols=68 Identities=16% Similarity=0.140 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043144 498 RPNVITYNSIMLGLCKARQT---YRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSR 565 (580)
Q Consensus 498 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (580)
.|+..+--.+++++.++.+. .+++.+++++.+.+.......+..|+-++.+.|++++|+++.+.+.+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 34444444445555544432 344555555554331112344445555555555555555555555543
No 241
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.86 E-value=1.8 Score=33.76 Aligned_cols=68 Identities=10% Similarity=0.072 Sum_probs=38.3
Q ss_pred CCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043144 463 KPDTITYSSLVGGLSREGK---VDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTR 530 (580)
Q Consensus 463 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 530 (580)
.|+..+--.+..++.+..+ ..+++.+++.+.+.++.......-.|+.++.+.|++++|+++.+.+++.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4555555555556655554 3456666666655433223334444555666677777777776666654
No 242
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.51 E-value=9 Score=40.60 Aligned_cols=256 Identities=9% Similarity=0.085 Sum_probs=142.8
Q ss_pred HHHhcCCHhHHHHHHHHHHHcCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC--C-----CCHHHHHHHHHH
Q 043144 230 ATCKESGVGQAMKLLDEMRNKGCIPD--VVTYNVLVNGICKEGRLDEAIKFLNDMPSYGC--Q-----PNVITHNIILRS 300 (580)
Q Consensus 230 ~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~-----~~~~~~~~ll~~ 300 (580)
+....|+.++++.+++..+..+...+ ...-..+.-+.+..|..+++.+++.......- . +....-.++.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 35567888888888877654210112 22333444556667776778887777654210 0 111222233333
Q ss_pred HHhcCC-hHHHHHHHHHHHHcCCCCChhhHH--HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhH--HHHHHHHHhcC
Q 043144 301 MCSTGR-WMDAERLLAEMVLKGCSPSVVTFN--ILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSY--NPVLHGFCKEK 375 (580)
Q Consensus 301 ~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~ 375 (580)
++..|. -+++...+..++.... +...... +|...+.-.|+.+....++..+.+.. +.... ..+.-++...|
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYG 538 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTT
T ss_pred HHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCC
Confidence 433343 2456666666665421 1111122 33344556788888888887766531 22333 33334455778
Q ss_pred CHHHHHHHHHHHHHCCCCCCHH-HH---HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 043144 376 KMDRAIEYLEIMVSRGCYPDIV-TY---NTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAM 451 (580)
Q Consensus 376 ~~~~A~~~~~~~~~~~~~~~~~-~~---~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 451 (580)
+.+.+..+.+.+... .++. -| ..+.-+|+..|+......++..+.+.. ..++.....+.-++...|+.+.+.
T Consensus 539 ~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 539 RQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp CGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred ChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHH
Confidence 888888888887764 2333 22 344556788899777777888887642 222332333333444577777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH-HHHHHHHHHHHh
Q 043144 452 KLLEEMRTKGLKPDTITYSSLVGGLSREGKV-DEAIKLFHDLER 494 (580)
Q Consensus 452 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~ 494 (580)
++++.+.+.+ .|...--..+.-+....|+. .++...+..+..
T Consensus 615 rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 615 RIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 7777666543 44444334444444445443 678888888874
No 243
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.25 E-value=2.8 Score=46.44 Aligned_cols=168 Identities=13% Similarity=0.069 Sum_probs=95.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc--CCCCCcchHHHHHHHHHhcCC
Q 043144 124 SLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM--SVAPDVVTYNTILRTLCDSGK 201 (580)
Q Consensus 124 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~ 201 (580)
.++..+.+.|.++-+.++.... +.++...-.++.+|...|++++|.+.|++. ++..+......
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~---------- 881 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAV---------- 881 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSS----------
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhh----------
Confidence 3445556666666665544332 234444445667777777777777777776 22221111000
Q ss_pred hhHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCH----hHHHHHHHHHHhcCCHHHH
Q 043144 202 LNLAMEVLHKQLEKE--CYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDV----VTYNVLVNGICKEGRLDEA 275 (580)
Q Consensus 202 ~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A 275 (580)
... +..+.... ...-..-|.-++..+-+.+.++.+.+.-....+...+.+. ..|..+...+...|++++|
T Consensus 882 ~~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~A 957 (1139)
T 4fhn_B 882 LRE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAA 957 (1139)
T ss_dssp HHH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGG
T ss_pred hcc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHH
Confidence 000 00111110 0112234566777788888888888877776654222121 2577788888888999998
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 043144 276 IKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAER 312 (580)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 312 (580)
...+-.+..... -......++..+|..|..+.-..
T Consensus 958 y~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~~L~~ 992 (1139)
T 4fhn_B 958 HVALMVLSTTPL--KKSCLLDFVNQLTKQGKINQLLN 992 (1139)
T ss_dssp GHHHHHHHHSSS--CHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHhCCCHHH--HHHHHHHHHHHHHhCCChhhhhC
Confidence 888888776533 34566777777777777655443
No 244
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.03 E-value=6.9 Score=37.89 Aligned_cols=185 Identities=11% Similarity=0.109 Sum_probs=101.9
Q ss_pred CChHHHHHHHHHHHhC-----CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hcC
Q 043144 98 GELEEGFKFLESMVYH-----GDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYC----RLG 168 (580)
Q Consensus 98 g~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g 168 (580)
|++++|++.+-.+.+. ...........++..|...|+++...+.+..+.+.... -......+++.+. ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCC
Confidence 6788888877555432 12334566788899999999999988888776654312 2222333443332 223
Q ss_pred Chh--HHHHHHHHc-CCCCC--------cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-----hhhHHHHHHHHH
Q 043144 169 EID--NALQVLERM-SVAPD--------VVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPD-----VITYTILIEATC 232 (580)
Q Consensus 169 ~~~--~A~~~~~~~-~~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~li~~~~ 232 (580)
..+ .-..+.+.. .+... ......|...+...|++.+|..++..+...-...+ +..+...++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 222 222333333 11111 11234566777777888887777777653211111 234555566677
Q ss_pred hcCCHhHHHHHHHHHHH----cCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 043144 233 KESGVGQAMKLLDEMRN----KGCIPD--VVTYNVLVNGICKEGRLDEAIKFLNDMP 283 (580)
Q Consensus 233 ~~g~~~~A~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 283 (580)
..+++.+|..++..+.. ....|+ ...+...+..+...+++.+|...|.++.
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 77777777777766532 111111 1234555566666677777666666553
No 245
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.80 E-value=2.3 Score=43.93 Aligned_cols=54 Identities=11% Similarity=-0.058 Sum_probs=47.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043144 508 MLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQL 562 (580)
Q Consensus 508 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (580)
+..|...|+++-|+++.++++.. .|.+-.+|..|+.+|...|+++.|+-.++.+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 45566789999999999999987 3777899999999999999999999888876
No 246
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.07 E-value=0.83 Score=43.51 Aligned_cols=74 Identities=8% Similarity=0.025 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHHHHH
Q 043144 468 TYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVT-----RSCKPTEATYTIL 542 (580)
Q Consensus 468 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~l 542 (580)
....++.++...|+++++...+..+....+- +...|..++.+|.+.|+..+|++.|++..+ .|+.|.+.+-...
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 4455666677778888887777777654433 666777788888888888888887777643 3677776654433
No 247
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.22 E-value=2.4 Score=32.49 Aligned_cols=69 Identities=10% Similarity=0.060 Sum_probs=45.5
Q ss_pred CCCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043144 462 LKPDTITYSSLVGGLSREGK---VDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTR 530 (580)
Q Consensus 462 ~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 530 (580)
-.|+..+--.+..++.+..+ ..+++.+++++.+.++.-....+-.|+-++.+.|++++|++..+.+++.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 35566665566666666554 4467777777765443223455556667788888888888888888764
No 248
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.78 E-value=2 Score=40.87 Aligned_cols=72 Identities=11% Similarity=0.236 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-----hCCCCCCHHH
Q 043144 431 LITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLE-----RLGVRPNVIT 503 (580)
Q Consensus 431 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~ 503 (580)
......++..+...|++++|...+..+.... +-+...+..++.++.+.|+..+|++.|+... +.|+.|...+
T Consensus 171 ~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 171 VLAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 4455667777888999999999999888764 5578899999999999999999999998874 4688887655
No 249
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=90.78 E-value=4.8 Score=31.33 Aligned_cols=68 Identities=16% Similarity=0.137 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043144 499 PNVITYNSIMLGLCKARQT---YRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRG 566 (580)
Q Consensus 499 ~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 566 (580)
|+..+-..+++++.++.+. .+++.+++++.+.+-.........|+-++.+.|++++|+++.+.+++..
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 4444444455555554432 3455555555543211123344445555555555555555555555543
No 250
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.36 E-value=10 Score=34.40 Aligned_cols=39 Identities=10% Similarity=0.308 Sum_probs=24.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 043144 90 HLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVME 143 (580)
Q Consensus 90 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 143 (580)
-++..+..|++=||.+.++....+ |.+++++++|++++.
T Consensus 19 rl~~~I~~G~yYEAhQ~~Rtl~~R---------------y~~~~~~~eAidlL~ 57 (312)
T 2wpv_A 19 RFENKIKAGDYYEAHQTLRTIANR---------------YVRSKSYEHAIELIS 57 (312)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH---------------HHHTTCHHHHHHHHH
T ss_pred HHHHHhhccChHHHHHHHHHHHHH---------------HHHhcCHHHHHHHHH
Confidence 345566667777776666655333 667777777777654
No 251
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=89.54 E-value=2.2 Score=34.29 Aligned_cols=113 Identities=12% Similarity=0.055 Sum_probs=59.8
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHC-CCCCC-------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC--CCCCHHHHHH
Q 043144 437 VIDGLSKVGKTEQAMKLLEEMRTK-GLKPD-------TITYSSLVGGLSREGKVDEAIKLFHDLERLG--VRPNVITYNS 506 (580)
Q Consensus 437 l~~~~~~~g~~~~A~~~~~~m~~~-~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~ 506 (580)
-+..+...|.++.|.-+.+.+... +..|+ ..++..+.+++...|++.+|...|+++.+.. +.-+......
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~ 105 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPS 105 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 355566677777777666664432 11222 1245566667777777777777777764211 1101111111
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043144 507 IMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQL 562 (580)
Q Consensus 507 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (580)
+. ....... ......+.+.-..+..+|.+.|++++|+.+++.+
T Consensus 106 ~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 106 TG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred cc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 10 0000000 0112344566677889999999999999998875
No 252
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.18 E-value=6.1 Score=43.75 Aligned_cols=151 Identities=13% Similarity=0.089 Sum_probs=96.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHc------------------
Q 043144 189 YNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNK------------------ 250 (580)
Q Consensus 189 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------------------ 250 (580)
...++..+.+.+.++.+.++.... +.+......+..++...|++++|...|.+....
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~ 889 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIA 889 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccc
Confidence 344556666667776666544332 223344445566677777777777777654210
Q ss_pred --C--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 043144 251 --G--CIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNV----ITHNIILRSMCSTGRWMDAERLLAEMVLKGC 322 (580)
Q Consensus 251 --~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 322 (580)
. ...-..-|..++..+.+.+.++.+.++-....+...+.+. ..|..+...+...|++++|...+-.+....
T Consensus 890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~- 968 (1139)
T 4fhn_B 890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP- 968 (1139)
T ss_dssp HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS-
T ss_pred ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH-
Confidence 0 0111234677888999999999998887766543212221 257888999999999999999988877653
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHH
Q 043144 323 SPSVVTFNILINFLCRKGLLGRAI 346 (580)
Q Consensus 323 ~~~~~~~~~l~~~~~~~g~~~~a~ 346 (580)
.-......|+...+..|..+.-.
T Consensus 969 -~r~~cLr~LV~~lce~~~~~~L~ 991 (1139)
T 4fhn_B 969 -LKKSCLLDFVNQLTKQGKINQLL 991 (1139)
T ss_dssp -SCHHHHHHHHHHHHHHCCHHHHH
T ss_pred -HHHHHHHHHHHHHHhCCChhhhh
Confidence 33456777777777777665443
No 253
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=88.43 E-value=4.3 Score=35.63 Aligned_cols=115 Identities=16% Similarity=0.081 Sum_probs=78.0
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCC
Q 043144 439 DGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVR--PNVITYNSIMLGLCKARQ 516 (580)
Q Consensus 439 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~ 516 (580)
....+.|++++|+.....-++.. +-|...-..++..++-.|++++|.+-++...+..+. |-...|..+|.+-
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE----- 78 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAA----- 78 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH-----
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHH-----
Confidence 44668899999999999888875 557888888999999999999999999998876433 1122344444331
Q ss_pred HHHHHHHHHHHH-HcCC-----CCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhC
Q 043144 517 TYRAIDILADMV-TRSC-----KPTEATYTILIEGI--AYEGLAKEALDLLNQLCSR 565 (580)
Q Consensus 517 ~~~A~~~~~~~~-~~~~-----~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~ 565 (580)
.++.-+ .-+- .....-...++.+. ...|+.++|.++-.++.+.
T Consensus 79 ------~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 79 ------QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ------HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 122222 1111 12233445555555 4579999999999998765
No 254
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.51 E-value=2.7 Score=30.26 Aligned_cols=63 Identities=16% Similarity=0.186 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043144 481 KVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIE 544 (580)
Q Consensus 481 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 544 (580)
+.=+..+-+..+.....-|++.+..+.+.+|.+.+++..|..+++-...+. .+...+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 445667777777777778888888888888888888888888888777653 333445655543
No 255
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.38 E-value=22 Score=34.37 Aligned_cols=95 Identities=14% Similarity=0.111 Sum_probs=53.6
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHH----hCCCCCC--HHH
Q 043144 435 NTVIDGLSKVGKTEQAMKLLEEMRTK--GLKPD---TITYSSLVGGLSREGKVDEAIKLFHDLE----RLGVRPN--VIT 503 (580)
Q Consensus 435 ~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~--~~~ 503 (580)
..+...|...|++.+|..++.++... +..+. ...+...+..|...+++.+|..++.++. .....|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 34556666677777777777666432 21111 2344555566677777777777776653 1111222 234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043144 504 YNSIMLGLCKARQTYRAIDILADMVT 529 (580)
Q Consensus 504 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 529 (580)
+...+..+...++|.+|...|.++.+
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 45566666667777777766666553
No 256
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=85.80 E-value=21 Score=32.63 Aligned_cols=81 Identities=11% Similarity=-0.019 Sum_probs=44.8
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHH
Q 043144 254 PDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILI 333 (580)
Q Consensus 254 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 333 (580)
-|+.....+...|.+.+++.+|...|- . |-.+....+..++.-+...+...+ .|...-.+++
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~e--------------~dlfiaRaVL 195 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDESHT--------------APLYCARAVL 195 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSCGGG--------------HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcCCcc--------------HHHHHHHHHH
Confidence 367777888888999999988888773 2 212333555555444333332111 1212222222
Q ss_pred HHHHhcCCHHHHHHHHHHhh
Q 043144 334 NFLCRKGLLGRAIDILEKMP 353 (580)
Q Consensus 334 ~~~~~~g~~~~a~~~~~~~~ 353 (580)
.|.-.+++..|...++...
T Consensus 196 -~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 196 -PYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp -HHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHhCCHHHHHHHHHHHH
Confidence 3445677777777665544
No 257
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=83.59 E-value=30 Score=32.61 Aligned_cols=130 Identities=6% Similarity=-0.047 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCC---ChhhHHHHHHHHHhc-CCHHHHHHHHHHhhhCCCCCCHhhH---
Q 043144 293 THNIILRSMCSTGRWMDAERLLAEMVLK-GCSP---SVVTFNILINFLCRK-GLLGRAIDILEKMPKHGCTPNSLSY--- 364 (580)
Q Consensus 293 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~--- 364 (580)
....+...|.+.|+.++..+++...... +..+ .......+++.+... +..+.-.+++.+..+.... +..+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~flr~ 99 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 4445566666666666666666554321 0001 112233444444432 2233333333333321000 11122
Q ss_pred ---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043144 365 ---NPVLHGFCKEKKMDRAIEYLEIMVSRGCYPD-----IVTYNTLLTALCKDGKVDVAVEILNQLS 423 (580)
Q Consensus 365 ---~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~ 423 (580)
..++..|...|++.+|..++.++.+.--..| ..++..-+..|...+++.++...+....
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 1344555555555555555555544210101 1133344444555555555555555443
No 258
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=81.25 E-value=13 Score=26.84 Aligned_cols=61 Identities=11% Similarity=0.174 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh-CCCCCCHHHHHHHH
Q 043144 446 KTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLER-LGVRPNVITYNSIM 508 (580)
Q Consensus 446 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~ 508 (580)
+.-+..+-++.+....+.|++.+....+.+|.+.+++..|.++|+.+.. .+. ...+|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~--~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP--HKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC--chhhHHHHH
Confidence 4557777778877778889999999999999999999999999998863 332 234565554
No 259
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=80.89 E-value=38 Score=31.92 Aligned_cols=93 Identities=12% Similarity=-0.068 Sum_probs=48.9
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCCCCC-----HhHHHHHHHHHHhcCCHHHHHHHHHHhhhC--CCCCCHHHHHHH-
Q 043144 226 ILIEATCKESGVGQAMKLLDEMRNKGCIPD-----VVTYNVLVNGICKEGRLDEAIKFLNDMPSY--GCQPNVITHNII- 297 (580)
Q Consensus 226 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l- 297 (580)
-++..|...|++.+|.+++..+.+.=-..| ..++-.-+..|...+++.++...+...... .+.+++.....+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 456677777777777777766654210111 223444556666777777777777665431 111222221111
Q ss_pred ---HHHHH-hcCChHHHHHHHHHHH
Q 043144 298 ---LRSMC-STGRWMDAERLLAEMV 318 (580)
Q Consensus 298 ---l~~~~-~~~~~~~a~~~~~~~~ 318 (580)
...+. ..++|..|...|-+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHH
Confidence 11234 5677777766665543
No 260
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.65 E-value=11 Score=36.39 Aligned_cols=61 Identities=11% Similarity=0.036 Sum_probs=29.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--CChhhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 043144 188 TYNTILRTLCDSGKLNLAMEVLHKQLEKECY--PDVITYTILIEATCKESGVGQAMKLLDEMR 248 (580)
Q Consensus 188 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 248 (580)
+...++..|.+.|+++.|.+.|.++...-.. .-...+..+++.+...+++..+...+.++.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3444555555555555555555554432111 123344445555555555555555555543
No 261
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=80.55 E-value=7 Score=29.91 Aligned_cols=63 Identities=16% Similarity=0.186 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043144 481 KVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIE 544 (580)
Q Consensus 481 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 544 (580)
+.=+..+-+..+...++-|++.+..+.+.+|.+.+++..|..+++-...+. .+...+|..++.
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 444666777777777778888888888888888888888888888877653 444555665543
No 262
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=80.36 E-value=35 Score=31.18 Aligned_cols=83 Identities=10% Similarity=-0.068 Sum_probs=48.4
Q ss_pred CCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 043144 218 YPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNII 297 (580)
Q Consensus 218 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 297 (580)
..|......+...|.+.+++.+|..-|- . |..+++..+..++.-+...+...+ ++.....++
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~e--------------~dlfiaRaV 194 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDESHT--------------APLYCARAV 194 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSCGGG--------------HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcCCcc--------------HHHHHHHHH
Confidence 3467777888899999999999888773 2 223334566544444433332111 122222222
Q ss_pred HHHHHhcCChHHHHHHHHHHHH
Q 043144 298 LRSMCSTGRWMDAERLLAEMVL 319 (580)
Q Consensus 298 l~~~~~~~~~~~a~~~~~~~~~ 319 (580)
-.|...++...|..+++...+
T Consensus 195 -L~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 195 -LPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -HHHHHTTCHHHHHHHHHHHHH
T ss_pred -HHHHHhCCHHHHHHHHHHHHH
Confidence 235667788888887766554
No 263
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=78.22 E-value=8 Score=33.92 Aligned_cols=56 Identities=18% Similarity=0.219 Sum_probs=48.1
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043144 474 GGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTR 530 (580)
Q Consensus 474 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 530 (580)
....+.|++++++.....-++..+. |...-..|+..+|-.|+|++|.+.++...+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 4567889999999999998887765 8888888999999999999999999988865
No 264
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.92 E-value=20 Score=35.06 Aligned_cols=130 Identities=12% Similarity=0.084 Sum_probs=49.8
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHHh--CCCCCC--------hhhHHHHHHHHHhcCChHHH----------H-HHHHH
Q 043144 86 ESNNHLRRLVRNGELEEGFKFLESMVY--HGDIPD--------IIPCTSLIRGFCKVGKTRKA----------T-RVMEI 144 (580)
Q Consensus 86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~--------~~~~~~l~~~~~~~g~~~~A----------~-~~~~~ 144 (580)
.+..++-.+..++++++|..+-..+.. .-..-+ ...|......+-..|+.... + .++..
T Consensus 138 ~~lL~~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~ 217 (523)
T 4b4t_S 138 MHLLVQLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKF 217 (523)
T ss_dssp -----------------------------------------------------------------CHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHH
Confidence 334444566778888888887765541 111112 22233333333344544331 1 12222
Q ss_pred HHhC----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcCCCCCcc-------hHHHHHHHHHhcCChhHHHHHHHHHH
Q 043144 145 VEDS----GAVPDVITYNVLISGYCRLGEIDNALQVLERMSVAPDVV-------TYNTILRTLCDSGKLNLAMEVLHKQL 213 (580)
Q Consensus 145 ~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~ 213 (580)
.... +..-....+|.+++.|...+.++.|..+..+...|.... -+..+++.+.-.+++.+|.+.+..+.
T Consensus 218 ~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~ 297 (523)
T 4b4t_S 218 LKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAI 297 (523)
T ss_dssp HHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 2222 212234567888888999999999999998885543321 13345677778888888888888877
Q ss_pred hC
Q 043144 214 EK 215 (580)
Q Consensus 214 ~~ 215 (580)
..
T Consensus 298 rk 299 (523)
T 4b4t_S 298 RK 299 (523)
T ss_dssp SS
T ss_pred Hh
Confidence 65
No 265
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.90 E-value=27 Score=33.54 Aligned_cols=60 Identities=8% Similarity=0.011 Sum_probs=32.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc
Q 043144 121 PCTSLIRGFCKVGKTRKATRVMEIVEDS--GAVPDVITYNVLISGYCRLGEIDNALQVLERM 180 (580)
Q Consensus 121 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 180 (580)
++..++..|.+.|+++.|.+.|.++... +...-...+...++.+...+++..+...+.++
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4555666666666666666666665542 11222334455555555566666665555554
No 266
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=77.57 E-value=17 Score=26.10 Aligned_cols=48 Identities=17% Similarity=0.102 Sum_probs=20.0
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043144 512 CKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSR 565 (580)
Q Consensus 512 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (580)
...|+|++|..+.+.. ..||...|..| +-.+.|-.+.+...+.++..+
T Consensus 51 mNrG~Yq~Al~l~~~~----c~pdlepw~AL--ce~rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 51 MNRGDYASALQQGNKL----AYPDLEPWLAL--CEYRLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHTTCHHHHHHHHTTS----CCGGGHHHHHH--HHHHHTCHHHHHHHHHHHTTC
T ss_pred HcchhHHHHHHhcCCC----CCchHHHHHHH--HHHhcccHHHHHHHHHHHHhC
Confidence 3444444444444332 13444444443 223444444444444444333
No 267
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=77.07 E-value=23 Score=27.21 Aligned_cols=62 Identities=11% Similarity=0.178 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 043144 446 KTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIM 508 (580)
Q Consensus 446 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 508 (580)
+.-+..+-++.+...++.|++.+....+.+|.+.+++..|.++|+-++..- .+...+|..++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 455677777777777888999999999999999999999999999887421 22344565554
No 268
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=76.11 E-value=17 Score=26.13 Aligned_cols=49 Identities=16% Similarity=0.135 Sum_probs=21.2
Q ss_pred HHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043144 476 LSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTR 530 (580)
Q Consensus 476 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 530 (580)
+...|+|++|..+.+.. ..||...|.+| +-.+.|..+++...+.++..+
T Consensus 49 LmNrG~Yq~Al~l~~~~----c~pdlepw~AL--ce~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGN----PWPALEPWFAL--CEWHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHTTCHHHHHGGGTTC----CCGGGHHHHHH--HHHHTTCHHHHHHHHHHHHTC
T ss_pred HHcchhHHHHHHhcCCC----CCchHHHHHHH--HHHhcccHHHHHHHHHHHHhC
Confidence 34455555554443322 13444444433 223445444444444444433
No 269
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=73.27 E-value=82 Score=31.83 Aligned_cols=351 Identities=11% Similarity=0.018 Sum_probs=177.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 043144 156 TYNVLISGYCRLGEIDNALQVLERMSVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKES 235 (580)
Q Consensus 156 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 235 (580)
.-...+..+.+.+++...+.++.. .+.+...-.....+....|+..+|....+.+-..+.. ....+
T Consensus 74 Lr~~~l~~l~~~~~w~~~l~~~~~--~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c----------- 139 (618)
T 1qsa_A 74 LQSRFVNELARREDWRGLLAFSPE--KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNAC----------- 139 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHCCS--CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHH-----------
T ss_pred HHHHHHHHHHhCCCHHHHHHhccC--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHH-----------
Confidence 334455666677777777765544 2344555556677777788877777766666554421 22233
Q ss_pred CHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHH-HHHHHHHHHhcCChHHHHHHH
Q 043144 236 GVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVIT-HNIILRSMCSTGRWMDAERLL 314 (580)
Q Consensus 236 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~ 314 (580)
-.+|....+.|.-.+...|.-+ ......|+...|..+...+. ++... ...++.... +...+....
T Consensus 140 -----~~l~~~~~~~g~lt~~~~~~R~-~~al~~~~~~~a~~l~~~l~-----~~~~~~a~~~~al~~---~p~~~~~~~ 205 (618)
T 1qsa_A 140 -----DKLFSVWRASGKQDPLAYLERI-RLAMKAGNTGLVTVLAGQMP-----ADYQTIASAIISLAN---NPNTVLTFA 205 (618)
T ss_dssp -----HHHHHHHHHTTCSCHHHHHHHH-HHHHHTTCHHHHHHHHHTCC-----GGGHHHHHHHHHHHH---CGGGHHHHH
T ss_pred -----HHHHHHHHHCCCCCHHHHHHHH-HHHHHCCCHHHHHHHHHhCC-----HHHHHHHHHHHHHHh---ChHhHHHHH
Confidence 3444444444433222333333 45566778887777766542 23222 222332222 222333322
Q ss_pred HHHHHcCCCCChh---hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHH----HHHHHhcCCHHHHHHHHHHH
Q 043144 315 AEMVLKGCSPSVV---TFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPV----LHGFCKEKKMDRAIEYLEIM 387 (580)
Q Consensus 315 ~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~A~~~~~~~ 387 (580)
.. . .++.. .+...+.-+.+ .+.+.|...+....+... .+......+ ...+...+...++...+...
T Consensus 206 ~~---~--~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~ 278 (618)
T 1qsa_A 206 RT---T--GATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDA 278 (618)
T ss_dssp HH---S--CCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHH
T ss_pred hc---c--CCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhc
Confidence 21 1 22222 11112222333 478999999988765432 233333222 22333445355667777765
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH
Q 043144 388 VSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTI 467 (580)
Q Consensus 388 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 467 (580)
.... .+.....-.+....+.|+++.|...|+.+..... ......-=+..++...|+.++|..+|..+... .+
T Consensus 279 ~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~~-- 350 (618)
T 1qsa_A 279 IMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG-- 350 (618)
T ss_dssp HHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS--
T ss_pred cccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CC--
Confidence 5542 3443344444445577999999999998876331 12222233456777899999999999998742 12
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC-CHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043144 468 TYSSLVGGLSREGKVDEAIKLFHDLERLGVRP-NVI---TYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILI 543 (580)
Q Consensus 468 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 543 (580)
-|..+ +..+.|..-. .. .......+ ... .-..-+..+...|....|...+..+... .+......+.
T Consensus 351 fYg~l--Aa~~Lg~~~~-~~----~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la 420 (618)
T 1qsa_A 351 FYPMV--AAQRIGEEYE-LK----IDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLA 420 (618)
T ss_dssp HHHHH--HHHHTTCCCC-CC----CCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHH
T ss_pred hHHHH--HHHHcCCCCC-CC----CCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHH
Confidence 23322 2222222000 00 00000000 000 0112234456677778887777776643 2333334455
Q ss_pred HHHHhcCCHHHHHHHH
Q 043144 544 EGIAYEGLAKEALDLL 559 (580)
Q Consensus 544 ~~~~~~g~~~~A~~~~ 559 (580)
......|.++.+....
T Consensus 421 ~~a~~~~~~~~~v~~~ 436 (618)
T 1qsa_A 421 RYAFNNQWWDLSVQAT 436 (618)
T ss_dssp HHHHHTTCHHHHHHHH
T ss_pred HHHHHCCChHHHHHHH
Confidence 5555666666655443
No 270
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=73.27 E-value=82 Score=31.83 Aligned_cols=336 Identities=9% Similarity=0.019 Sum_probs=177.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc--CCCCCcchHHHHHHHHH
Q 043144 120 IPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM--SVAPDVVTYNTILRTLC 197 (580)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~ 197 (580)
..-..-+..+.+.+++...+..+.. .+.+...-.....+....|+.++|......+ .-.........++..+.
T Consensus 73 ~Lr~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~ 147 (618)
T 1qsa_A 73 TLQSRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWR 147 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Confidence 4445666777788888877765432 2556666666777888899988888877776 32445667788888888
Q ss_pred hcCChhHH--HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHH--------------
Q 043144 198 DSGKLNLA--MEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNV-------------- 261 (580)
Q Consensus 198 ~~g~~~~A--~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-------------- 261 (580)
+.|.+... ..=++.++..+ +...-..++... . .+.....+.+..+... +++......
T Consensus 148 ~~g~lt~~~~~~R~~~al~~~---~~~~a~~l~~~l-~-~~~~~~a~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~ 220 (618)
T 1qsa_A 148 ASGKQDPLAYLERIRLAMKAG---NTGLVTVLAGQM-P-ADYQTIASAIISLANN--PNTVLTFARTTGATDFTRQMAAV 220 (618)
T ss_dssp HTTCSCHHHHHHHHHHHHHTT---CHHHHHHHHHTC-C-GGGHHHHHHHHHHHHC--GGGHHHHHHHSCCCHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhC-C-HHHHHHHHHHHHHHhC--hHhHHHHHhccCCChhhHHHHHH
Confidence 77766543 33334444443 222222222211 0 1111111222222222 112221110
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH----HHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 043144 262 LVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILR----SMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLC 337 (580)
Q Consensus 262 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 337 (580)
-+.-+. ..+.+.|...+....+.. ..+......+-. .....+...++...+....... .+.....-.+....
T Consensus 221 ~~~rla-r~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Al 296 (618)
T 1qsa_A 221 AFASVA-RQDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMAL 296 (618)
T ss_dssp HHHHHH-HHCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHH
T ss_pred HHHHHH-hcCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHH
Confidence 111222 347788888888876433 223332222222 2233443556666666655432 33333444455556
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 043144 338 RKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVE 417 (580)
Q Consensus 338 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 417 (580)
+.|+++.|...|+.|...... ......-+..++...|+.++|..+|+.+... .+ |-.++ +..+.|..-..
T Consensus 297 r~~d~~~a~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~~---fYg~l-Aa~~Lg~~~~~-- 366 (618)
T 1qsa_A 297 GTGDRRGLNTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG---FYPMV-AAQRIGEEYEL-- 366 (618)
T ss_dssp HHTCHHHHHHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS---HHHHH-HHHHTTCCCCC--
T ss_pred HCCCHHHHHHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CC---hHHHH-HHHHcCCCCCC--
Confidence 779999999999888764221 2333444566777889999999999988742 22 22322 22233321000
Q ss_pred HHHHHHhCCCCC---CHHH---HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 043144 418 ILNQLSNKHCSP---VLIT---YNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLF 489 (580)
Q Consensus 418 ~~~~~~~~~~~~---~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 489 (580)
......+ .... -..-+..+...|....|...+..+... . +......+.......|..+.+....
T Consensus 367 -----~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~-~--~~~~~~~la~~a~~~~~~~~~v~~~ 436 (618)
T 1qsa_A 367 -----KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS-K--SKTEQAQLARYAFNNQWWDLSVQAT 436 (618)
T ss_dssp -----CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT-C--CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -----CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc-C--CHHHHHHHHHHHHHCCChHHHHHHH
Confidence 0000001 0000 112344567889999999988887754 2 3333334444555666666655443
No 271
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=71.67 E-value=25 Score=25.26 Aligned_cols=46 Identities=15% Similarity=0.209 Sum_probs=18.4
Q ss_pred hcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 043144 233 KESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPS 284 (580)
Q Consensus 233 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 284 (580)
..|+|++|..+.+... .||...|.+|.. .+.|-.+++...+.++..
T Consensus 52 NrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 52 NRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp HTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred cchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 3444444444433322 344444443332 233444444444434433
No 272
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=71.42 E-value=59 Score=29.39 Aligned_cols=80 Identities=9% Similarity=-0.024 Sum_probs=44.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 043144 325 SVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKE---KKMDRAIEYLEIMVSRGCYPDIVTYNT 401 (580)
Q Consensus 325 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~ 401 (580)
|+.....+...|.+.|++.+|...|-.-... +...+..++.-+... |...++ |......
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~----s~~~~a~~l~~w~~~~~~~~~~e~--------------dlf~~Ra 194 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFMLGTHD----SMIKYVDLLWDWLCQVDDIEDSTV--------------AEFFSRL 194 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTSCHH----HHHHHHHHHHHHHHHTTCCCHHHH--------------HHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHhCCCc----cHHHHHHHHHHHHHhcCCCCcchH--------------HHHHHHH
Confidence 6667777888888888888888776522111 344555555444333 332221 1222222
Q ss_pred HHHHHHhcCChHHHHHHHHHHH
Q 043144 402 LLTALCKDGKVDVAVEILNQLS 423 (580)
Q Consensus 402 li~~~~~~g~~~~A~~~~~~~~ 423 (580)
++ .|.-.|+...|..+|+...
T Consensus 195 VL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 195 VF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HH-HHHHTTBHHHHHHHHHHHH
T ss_pred HH-HHHHhcCHHHHHHHHHHHH
Confidence 22 3445677888877777654
No 273
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=70.00 E-value=47 Score=27.65 Aligned_cols=53 Identities=15% Similarity=0.234 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 043144 377 MDRAIEYLEIMVSRGCYPDI-VTYNTLLTALCKDGKVDVAVEILNQLSNKHCSP 429 (580)
Q Consensus 377 ~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 429 (580)
...+..+|..|...|+-... ..|......+...|++.+|.++|+.-.+.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 44455555555544433222 244444444455555555555555554444334
No 274
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=66.76 E-value=55 Score=27.23 Aligned_cols=54 Identities=19% Similarity=0.295 Sum_probs=31.9
Q ss_pred ChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC
Q 043144 306 RWMDAERLLAEMVLKGCSPS-VVTFNILINFLCRKGLLGRAIDILEKMPKHGCTP 359 (580)
Q Consensus 306 ~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 359 (580)
...++..+|..|...|+-.. ...|...+..+...|++.+|.++|+.-++.+..|
T Consensus 94 ~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 94 NFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp CHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 35566666666666554333 2345555666666677777777766666654444
No 275
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=58.04 E-value=62 Score=29.18 Aligned_cols=72 Identities=17% Similarity=0.200 Sum_probs=36.0
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCHHHHHHH
Q 043144 470 SSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQ--TYRAIDILADMVTRSCKPTEATYTIL 542 (580)
Q Consensus 470 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l 542 (580)
..++.-|...|+.++|.+.++++...... ...+...+..++-+.++ .+....++..+.+.++-+.......+
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf 243 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGY 243 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 45666666777777777777776421111 12233334434433322 34455666666655554444433333
No 276
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=56.53 E-value=1.2e+02 Score=27.93 Aligned_cols=63 Identities=19% Similarity=0.304 Sum_probs=29.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHCCC
Q 043144 399 YNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGK--TEQAMKLLEEMRTKGL 462 (580)
Q Consensus 399 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~m~~~~~ 462 (580)
...++.-|...|+.++|...++++...... ...+...+..++-+.++ .+....++..+...|+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gl 284 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 284 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCC
Confidence 355556666666666666666666432111 12223333333333322 2344555555554443
No 277
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=55.82 E-value=1e+02 Score=26.79 Aligned_cols=18 Identities=22% Similarity=0.182 Sum_probs=9.2
Q ss_pred HHHHhcCChhHHHHHHHH
Q 043144 162 SGYCRLGEIDNALQVLER 179 (580)
Q Consensus 162 ~~~~~~g~~~~A~~~~~~ 179 (580)
...++.|+.+....+++.
T Consensus 10 ~~A~~~g~~~~v~~Ll~~ 27 (285)
T 1wdy_A 10 IKAVQNEDVDLVQQLLEG 27 (285)
T ss_dssp HHHHHTTCHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHc
Confidence 334556666555555543
No 278
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=55.62 E-value=55 Score=23.55 Aligned_cols=51 Identities=22% Similarity=0.262 Sum_probs=25.5
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 043144 265 GICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKG 321 (580)
Q Consensus 265 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 321 (580)
.+...|++++|..+.+.+. .||...|.++. -.+.|-.+++...+..+..+|
T Consensus 48 SLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGNP----WPALEPWFALC--EWHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHTTCHHHHHGGGTTCC----CGGGHHHHHHH--HHHTTCHHHHHHHHHHHHTCS
T ss_pred HHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHHHHHHhCC
Confidence 3445566666655554443 45555554442 234455555555554444443
No 279
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=55.01 E-value=1.1e+02 Score=32.97 Aligned_cols=129 Identities=13% Similarity=0.078 Sum_probs=71.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc--CCCCCcchHHHHHHHHHhcCCh
Q 043144 125 LIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM--SVAPDVVTYNTILRTLCDSGKL 202 (580)
Q Consensus 125 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~ 202 (580)
++..|...|.++-|.++... .+.++..--.++.+|...|++++|.+.|+++ ++..+...... .
T Consensus 816 l~~~L~~~~~~~~a~eL~~~-----~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~----------~ 880 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAV----------L 880 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGG----------G
T ss_pred HHHHHHHhcHHHHHHHHHhh-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccc----------h
Confidence 55566677777665554322 2344444455777788888888888888887 33222111000 0
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCH----hHHHHHHHHHHhcC
Q 043144 203 NLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDV----VTYNVLVNGICKEG 270 (580)
Q Consensus 203 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g 270 (580)
.....++... +. ......-|.-++..+-+.+.++.+.++-+.+++.-...|. ..|+.+.++++..|
T Consensus 881 ~~~~~ll~~~-e~-~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 881 REFQEIAEKY-HH-QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHT-TT-CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhccCcc-cc-cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 0000111100 00 0011235777888888999999999888888764222232 35777777776654
No 280
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=52.79 E-value=83 Score=24.79 Aligned_cols=27 Identities=15% Similarity=0.140 Sum_probs=10.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCC
Q 043144 400 NTLLTALCKDGKVDVAVEILNQLSNKH 426 (580)
Q Consensus 400 ~~li~~~~~~g~~~~A~~~~~~~~~~~ 426 (580)
......+...|++.+|.++|+.-.+.+
T Consensus 105 e~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 105 IAWAGHLEAQGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 333333344444444444444443333
No 281
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=52.32 E-value=62 Score=26.06 Aligned_cols=62 Identities=13% Similarity=0.126 Sum_probs=0.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCC-----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCch
Q 043144 510 GLCKARQTYRAIDILADMVTRSCKPT-----------------EATYTILIEGIAYEGLAKEALDLLNQLCSRGVVKKS 571 (580)
Q Consensus 510 ~~~~~g~~~~A~~~~~~~~~~~~~~~-----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~ 571 (580)
+|-+.+++..|+..++.+++..+..| +-.+..++..|.+.|+.++|++.+..-....+.-++
T Consensus 71 Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~ 149 (242)
T 3kae_A 71 CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSP 149 (242)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccch
No 282
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=51.94 E-value=1.1e+02 Score=29.87 Aligned_cols=62 Identities=15% Similarity=0.118 Sum_probs=37.1
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCH--HHH-HHHHHHHHhcCChhHHHHHHHHc
Q 043144 119 IIPCTSLIRGFCKVGKTRKATRVMEIVEDSGA-VPDV--ITY-NVLISGYCRLGEIDNALQVLERM 180 (580)
Q Consensus 119 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~--~~~-~~l~~~~~~~g~~~~A~~~~~~~ 180 (580)
..++|.+++.|...+.+++|..+..+..--.. .++. ..| ..++..+.-.+++.+|.+.+..+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 45677777777777777777777776531100 1111 122 23556666677777777777765
No 283
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=47.20 E-value=81 Score=28.44 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=16.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 043144 399 YNTLLTALCKDGKVDVAVEILNQLS 423 (580)
Q Consensus 399 ~~~li~~~~~~g~~~~A~~~~~~~~ 423 (580)
...++.-|...|+.++|.+.++++.
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~ 193 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELE 193 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 3455666666777777777777665
No 284
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=46.02 E-value=1.1e+02 Score=24.14 Aligned_cols=48 Identities=13% Similarity=0.123 Sum_probs=22.6
Q ss_pred HHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 043144 310 AERLLAEMVLKGCSPS-VVTFNILINFLCRKGLLGRAIDILEKMPKHGC 357 (580)
Q Consensus 310 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 357 (580)
+..+|..|...|+-.. ...|...+..+...|++.+|.++|+.-++.+-
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 132 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQA 132 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 4455555554443222 22344444445555555555555555554433
No 285
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=45.51 E-value=1e+02 Score=24.30 Aligned_cols=65 Identities=15% Similarity=0.250 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC--HHHHHHHHHHHHhCCCC
Q 043144 433 TYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGK--VDEAIKLFHDLERLGVR 498 (580)
Q Consensus 433 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~ 498 (580)
....++.-|...|+.++|.+.++++..-.. ....+...+..++-+.++ .+.+..++..+...++-
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 345667777777888888888877641110 112233334444444322 34455666666554433
No 286
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=45.06 E-value=1.3e+02 Score=24.80 Aligned_cols=17 Identities=24% Similarity=0.067 Sum_probs=6.9
Q ss_pred CHHHHHHHHHHHHhcCC
Q 043144 395 DIVTYNTLLTALCKDGK 411 (580)
Q Consensus 395 ~~~~~~~li~~~~~~g~ 411 (580)
+..+-...+.++...|+
T Consensus 125 ~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 125 DWFVRIAAAFALGEIGD 141 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 33333344444444443
No 287
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=44.37 E-value=1.2e+02 Score=24.24 Aligned_cols=50 Identities=10% Similarity=0.131 Sum_probs=21.7
Q ss_pred HHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 043144 380 AIEYLEIMVSRGCYPDI-VTYNTLLTALCKDGKVDVAVEILNQLSNKHCSP 429 (580)
Q Consensus 380 A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 429 (580)
+..+|..|...|+-... ..|......+-..|++.+|.++|..-.+.+..|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 33444444444433222 234444444444455555555554444444333
No 288
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=43.65 E-value=1.2e+02 Score=26.00 Aligned_cols=91 Identities=9% Similarity=0.066 Sum_probs=44.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhC--CCCC----ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 043144 87 SNNHLRRLVRNGELEEGFKFLESMVYH--GDIP----DIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVL 160 (580)
Q Consensus 87 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 160 (580)
.-.-++.+....++++|..+.++.... +.++ +.......+..-.....-.-+..+.+.+.. ..+.......
T Consensus 21 ~~deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~ 97 (235)
T 2d2s_A 21 GVEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSG 97 (235)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHH
T ss_pred ccHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHH
Confidence 345678888888999998888876432 1111 111122222222332222333333333322 2334444445
Q ss_pred HHHHHhcCChhHHHHHHHHc
Q 043144 161 ISGYCRLGEIDNALQVLERM 180 (580)
Q Consensus 161 ~~~~~~~g~~~~A~~~~~~~ 180 (580)
+..+.+.|+.++|.++|-+.
T Consensus 98 v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 98 TENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCChhHHHHHHHHH
Confidence 55556666666666665543
No 289
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=42.57 E-value=1.1e+02 Score=23.24 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=15.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHH
Q 043144 434 YNTVIDGLSKVGKTEQAMKLLEEMR 458 (580)
Q Consensus 434 ~~~l~~~~~~~g~~~~A~~~~~~m~ 458 (580)
...++.-|...|+.++|.+.++++.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 3455566666666666666666653
No 290
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=42.19 E-value=1.7e+02 Score=25.27 Aligned_cols=48 Identities=19% Similarity=0.124 Sum_probs=21.8
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhh--HHHHHHHHHhcCCHHHHHHHHH
Q 043144 303 STGRWMDAERLLAEMVLKGCSPSVVT--FNILINFLCRKGLLGRAIDILE 350 (580)
Q Consensus 303 ~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~ 350 (580)
..+......++.+.+.+.|..++... -...+...+..|+.+-+..+++
T Consensus 191 ~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 191 LSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 34444444555555666654443221 1122333445566655544444
No 291
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=39.05 E-value=2.2e+02 Score=25.73 Aligned_cols=51 Identities=10% Similarity=0.047 Sum_probs=32.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043144 481 KVDEAIKLFHDLERLGVRPNV--ITYNSIMLGLCKARQTYRAIDILADMVTRS 531 (580)
Q Consensus 481 ~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 531 (580)
+..+..++--.+...++.|.. -+...-+....+.+++..|..+.+++++.+
T Consensus 185 ~~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~ 237 (325)
T 3mv2_A 185 NTVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKII 237 (325)
T ss_dssp CHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 344555555555555555542 234555666778888888888888888664
No 292
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=38.58 E-value=1.9e+02 Score=24.79 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=12.3
Q ss_pred HHHHHhcCChHHHHHHHHHHH
Q 043144 403 LTALCKDGKVDVAVEILNQLS 423 (580)
Q Consensus 403 i~~~~~~g~~~~A~~~~~~~~ 423 (580)
++.+....++++|..++++..
T Consensus 25 LDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 455556666666666665544
No 293
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=38.42 E-value=2.3e+02 Score=30.49 Aligned_cols=48 Identities=17% Similarity=0.212 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH----HHHHHHHHHHHhcC
Q 043144 258 TYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNV----ITHNIILRSMCSTG 305 (580)
Q Consensus 258 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~ 305 (580)
-|..++..+-+.+.++-+.++-+...+.--..|. ..|..+.++.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 6788999999999999999888777653212233 35667777766554
No 294
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=38.30 E-value=1.5e+02 Score=23.65 Aligned_cols=54 Identities=15% Similarity=0.163 Sum_probs=37.9
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 043144 485 AIKLFHDLERLGVRP-NVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEAT 538 (580)
Q Consensus 485 A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 538 (580)
+..+|..|...++-. -...|...+..+-..|++.+|.++|+..++.+-.|-...
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L 133 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERL 133 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Confidence 566777777665543 355667777777788888888888888887776665443
No 295
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=37.28 E-value=1.9e+02 Score=27.71 Aligned_cols=139 Identities=12% Similarity=0.030 Sum_probs=85.1
Q ss_pred CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 043144 98 GELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVL 177 (580)
Q Consensus 98 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 177 (580)
.+.+-|+++..+ .|.+.-...|..-.+.+...|++++|.++-.... .|.-.++.|.+.+-.+=..-|+..--+.+|
T Consensus 343 ~n~~lA~~lA~R---~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP-~giLRt~~Ti~rFk~vp~~pgq~splL~YF 418 (494)
T 1bpo_A 343 QNPDLALRMAVR---NNLAGAEELFARKFNALFAQGNYSEAAKVAANAP-KGILRTPDTIRRFQSVPAQPGQTSPLLQYF 418 (494)
T ss_dssp CCHHHHHHHHHH---TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSG-GGSSCSHHHHHHHTTSCCCTTSCCHHHHHH
T ss_pred CCHHHHHHHHHh---cCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCc-cccccCHHHHHHHhcCCCCCCCCCHHHHHH
Confidence 566666665544 4566666677777888999999999998876553 455667777666555444456666666777
Q ss_pred HHc--CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 043144 178 ERM--SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMR 248 (580)
Q Consensus 178 ~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 248 (580)
..+ .-..+..---.+++.-..+|+.+.....+.+ ..+..+.. ...++ +..+..-|..+|.+..
T Consensus 419 ~~Ll~~g~Ln~~ESlEl~r~vL~q~r~~llekWl~e---~KL~~SEe-LGDlv----k~~d~~LAl~IY~~a~ 483 (494)
T 1bpo_A 419 GILLDQGQLNKYESLELCRPVLQQGRKQLLEKWLKE---DKLECSEE-LGDLV----KSVDPTLALSVYLRAN 483 (494)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH---TCSCCCHH-HHHHH----HHHCSHHHHHHHHHHC
T ss_pred HHHhccCccchHHhhHHhHHHHhccHHHHHHHHHhc---CCccccHH-hHhhh----hhcCHHHHHHHHHHcC
Confidence 665 1133444344566666677777766665543 22333332 22232 4446677777776654
No 296
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=36.69 E-value=1.7e+02 Score=24.82 Aligned_cols=52 Identities=13% Similarity=0.271 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC
Q 043144 308 MDAERLLAEMVLKGCSPSV-VTFNILINFLCRKGLLGRAIDILEKMPKHGCTP 359 (580)
Q Consensus 308 ~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 359 (580)
++...+|..|...|+-... ..|...+..+...|++.+|..+|+.-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3455566666655443322 344555555556666666666666655554333
No 297
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=36.64 E-value=1.8e+02 Score=23.92 Aligned_cols=16 Identities=0% Similarity=-0.051 Sum_probs=6.0
Q ss_pred CHhhHHHHHHHHHhcC
Q 043144 360 NSLSYNPVLHGFCKEK 375 (580)
Q Consensus 360 ~~~~~~~l~~~~~~~~ 375 (580)
+..+-...+.++.+.+
T Consensus 156 ~~~vr~~a~~aL~~~~ 171 (211)
T 3ltm_A 156 DGWVRQSAADALGEIG 171 (211)
T ss_dssp SHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhC
Confidence 3333333333333333
No 298
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=35.46 E-value=1.4e+02 Score=25.26 Aligned_cols=47 Identities=11% Similarity=0.147 Sum_probs=19.9
Q ss_pred HHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 043144 380 AIEYLEIMVSRGCYPDI-VTYNTLLTALCKDGKVDVAVEILNQLSNKH 426 (580)
Q Consensus 380 A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 426 (580)
+..+|..|...|+-... ..|......+...|++.+|..+|..-.+..
T Consensus 133 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 133 PVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp HHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 33444444444433222 233444444444444444444444444433
No 299
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=34.12 E-value=2.3e+02 Score=24.83 Aligned_cols=8 Identities=0% Similarity=-0.139 Sum_probs=3.2
Q ss_pred hcCChhHH
Q 043144 166 RLGEIDNA 173 (580)
Q Consensus 166 ~~g~~~~A 173 (580)
..|+.+-+
T Consensus 40 ~~g~~~~v 47 (285)
T 3kea_A 40 ADNNVRLV 47 (285)
T ss_dssp HTTCHHHH
T ss_pred HcCCHHHH
Confidence 34444333
No 300
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=33.76 E-value=1.4e+02 Score=24.99 Aligned_cols=95 Identities=14% Similarity=0.224 Sum_probs=48.6
Q ss_pred ccHHHHHHHHHH--cCChHHHHHHHHHHHhCCCCCChhhHHHHHH---HHH--hcC--------------ChHHHHHHHH
Q 043144 85 FESNNHLRRLVR--NGELEEGFKFLESMVYHGDIPDIIPCTSLIR---GFC--KVG--------------KTRKATRVME 143 (580)
Q Consensus 85 ~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~---~~~--~~g--------------~~~~A~~~~~ 143 (580)
+.+.++.+++.. .+++.+-+.+++.++..+...+... ...+. .+. ..| -.+.|+.+|+
T Consensus 18 fyf~~~c~aFR~~r~~dFrq~rdi~eall~~~l~~~~~~-~k~iri~QfLsRI~eG~~LD~~Fd~~~~lTPLESAl~v~~ 96 (235)
T 3bu8_A 18 FYFHEALRAFRGSRYGDFRQIRDIMQALLVRPLGKEHTV-SRLLRVMQCLSRIEEGENLDCSFDMEAELTPLESAINVLE 96 (235)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCCCCCHHH-HHHHHHHHHHHHHHTTTCTTEECSSSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHhCcccccccc-hhHHHHHHHHHHHHcCCCCCcccCCCCCCChHHHHHHHHH
Confidence 344555555542 2455556666666665544444321 11221 111 122 1356777777
Q ss_pred HHHhCCCCCCHH-------HHHHHHHHHHhcCChhHHHHHHHHc
Q 043144 144 IVEDSGAVPDVI-------TYNVLISGYCRLGEIDNALQVLERM 180 (580)
Q Consensus 144 ~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~ 180 (580)
.+.+....++.. .-...+..|.+.|.+++|.+++++.
T Consensus 97 ~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~ 140 (235)
T 3bu8_A 97 MIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKH 140 (235)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 776643211111 1123445667788888888888876
No 301
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=33.52 E-value=2.9e+02 Score=25.48 Aligned_cols=76 Identities=16% Similarity=0.150 Sum_probs=39.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043144 469 YSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQ--TYRAIDILADMVTRSCKPTEATYTILIEG 545 (580)
Q Consensus 469 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 545 (580)
...++.-|...|+.++|.+.++++...... ...+...+..++-+.++ .+...+++..+...++-+.......+.+.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~v 297 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 297 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 355666677777777777777777421111 12333444444444332 34456666666666555444444333333
No 302
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=33.21 E-value=1.8e+02 Score=23.09 Aligned_cols=53 Identities=6% Similarity=-0.104 Sum_probs=28.9
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHH-H-----HHhcCCHHHHHHHHHHHHh
Q 043144 512 CKARQTYRAIDILADMVTRSCKP--TEATYTILIE-G-----IAYEGLAKEALDLLNQLCS 564 (580)
Q Consensus 512 ~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~g~~~~A~~~~~~~~~ 564 (580)
...|++-+|-++++..-...-.+ +...|..||. . ..+.|+...|..++++...
T Consensus 43 Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 43 YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34466666666666665443233 3344555555 1 1345666666666666654
No 303
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=32.52 E-value=1.6e+02 Score=22.27 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=12.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHh
Q 043144 331 ILINFLCRKGLLGRAIDILEKM 352 (580)
Q Consensus 331 ~l~~~~~~~g~~~~a~~~~~~~ 352 (580)
.++.-|...|+.++|.+.++++
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHh
Confidence 3445555555555555555554
No 304
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=30.88 E-value=3.6e+02 Score=25.77 Aligned_cols=35 Identities=20% Similarity=0.173 Sum_probs=21.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 043144 374 EKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCK 408 (580)
Q Consensus 374 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 408 (580)
.++.+.|+.++.+|++.|..|....-..+..+.-.
T Consensus 268 gsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~ed 302 (447)
T 3pvs_A 268 GSAPDAALYWYARIITAGGDPLYVARRCLAIASED 302 (447)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 46677777777777777666544444444444433
No 305
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=29.34 E-value=2.1e+02 Score=22.49 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=11.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHh
Q 043144 331 ILINFLCRKGLLGRAIDILEKM 352 (580)
Q Consensus 331 ~l~~~~~~~g~~~~a~~~~~~~ 352 (580)
.++.-|...|+.++|...++++
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHh
Confidence 3444555555555555555554
No 306
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=28.75 E-value=2.9e+02 Score=24.06 Aligned_cols=11 Identities=9% Similarity=0.063 Sum_probs=5.0
Q ss_pred HHHhcCChHHH
Q 043144 128 GFCKVGKTRKA 138 (580)
Q Consensus 128 ~~~~~g~~~~A 138 (580)
..+..|+.+-+
T Consensus 68 ~A~~~g~~~~v 78 (285)
T 3kea_A 68 QAATLEDTKIV 78 (285)
T ss_dssp HHTTSSSCHHH
T ss_pred HHHHcCCHHHH
Confidence 34445554433
No 307
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=28.12 E-value=3e+02 Score=23.95 Aligned_cols=170 Identities=12% Similarity=0.035 Sum_probs=0.0
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 043144 360 NSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKD-GKVDVAVEILNQLSNKHCSPVLITYNTVI 438 (580)
Q Consensus 360 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 438 (580)
+......+....-+.+++++.....+++.+.+...+..-.+.|-.+|-.. |....+++++..+.+..-.........++
T Consensus 30 ~re~lv~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRiissieqkee~~g~~~~~~~i 109 (261)
T 3ubw_A 30 DREDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGEDKLKMI 109 (261)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHHhHHHHhhhccccHHHHHHH
Q ss_pred HHHHhC--CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH-----------------HHHHHHHHHHH---hCC
Q 043144 439 DGLSKV--GKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKV-----------------DEAIKLFHDLE---RLG 496 (580)
Q Consensus 439 ~~~~~~--g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~-----------------~~A~~~~~~~~---~~~ 496 (580)
..|... .....-..=.-.+++..+-|+..+-..-+-.+.-.|++ +.|.+.|+.+. ...
T Consensus 110 ~~yr~kIe~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlAE~~~g~~rk~~~e~a~~aY~~A~~iA~~~ 189 (261)
T 3ubw_A 110 REYRQMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTE 189 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCcHHHHHHHHHhhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred CCCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHH
Q 043144 497 VRPNVITYNSIMLGLCK-----ARQTYRAIDILADMVT 529 (580)
Q Consensus 497 ~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~ 529 (580)
++|...+...|+.-|+- .++.++|..+.+++.+
T Consensus 190 L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd 227 (261)
T 3ubw_A 190 LPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 227 (261)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
No 308
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=27.80 E-value=2.1e+02 Score=22.29 Aligned_cols=67 Identities=15% Similarity=0.092 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 043144 343 GRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDG 410 (580)
Q Consensus 343 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 410 (580)
.....+-+.+.+.|.. ....-..++..+...+..-.|.++++.+.+.++..+..|....+..+...|
T Consensus 9 ~~~~~~~~~l~~~g~r-~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 9 SILERLRMSIKKNGLK-NSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHHHHHHHCC---CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
No 309
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=26.87 E-value=1.2e+02 Score=21.37 Aligned_cols=24 Identities=17% Similarity=-0.069 Sum_probs=12.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 043144 504 YNSIMLGLCKARQTYRAIDILADM 527 (580)
Q Consensus 504 ~~~l~~~~~~~g~~~~A~~~~~~~ 527 (580)
+......+.+.|++++|++..++.
T Consensus 18 ~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHH
Confidence 334455555556666665555444
No 310
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=26.46 E-value=2.5e+02 Score=22.52 Aligned_cols=82 Identities=13% Similarity=0.069 Sum_probs=36.3
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCC
Q 043144 93 RLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDV---ITYNVLISGYCRLGE 169 (580)
Q Consensus 93 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~ 169 (580)
..+..|+.+....++..-...-...+..-+ ..+...+..|+.+-+..++ +.|..++. ...+. +...+..|+
T Consensus 11 ~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~-t~L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~-l~~A~~~~~ 84 (201)
T 3hra_A 11 EAANQRDTKKVKEILQDTTYQVDEVDTEGN-TPLNIAVHNNDIEIAKALI----DRGADINLQNSISDSP-YLYAGAQGR 84 (201)
T ss_dssp HHHHTTCHHHHHHHHTCTTCCTTCCCTTSC-CHHHHHHHHTCHHHHHHHH----HTTCCTTCCCTTSCCH-HHHHHHTTC
T ss_pred HHHHhccHHHHHHHHHcCCCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHH----HcCCCCCCCCCCCCCH-HHHHHHcCC
Confidence 445566766655555432100011122222 2334445666655444444 44433322 12222 333355677
Q ss_pred hhHHHHHHHHc
Q 043144 170 IDNALQVLERM 180 (580)
Q Consensus 170 ~~~A~~~~~~~ 180 (580)
.+-+..+++..
T Consensus 85 ~~~~~~Ll~~~ 95 (201)
T 3hra_A 85 TEILAYMLKHA 95 (201)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHhcc
Confidence 76666666554
No 311
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=25.05 E-value=2.6e+02 Score=23.47 Aligned_cols=49 Identities=14% Similarity=0.129 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHhCCCCCChh-------hHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 043144 100 LEEGFKFLESMVYHGDIPDII-------PCTSLIRGFCKVGKTRKATRVMEIVEDS 148 (580)
Q Consensus 100 ~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 148 (580)
++.|+.+++.+...-.-++.. +-...+..|.+.|.+++|.+++++....
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 355666666665542211111 1224556689999999999999998765
No 312
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=24.85 E-value=2.7e+02 Score=22.32 Aligned_cols=14 Identities=7% Similarity=0.223 Sum_probs=6.6
Q ss_pred hcCChhHHHHHHHH
Q 043144 166 RLGEIDNALQVLER 179 (580)
Q Consensus 166 ~~g~~~~A~~~~~~ 179 (580)
..|+.+....++..
T Consensus 14 ~~g~~~~v~~ll~~ 27 (201)
T 3hra_A 14 NQRDTKKVKEILQD 27 (201)
T ss_dssp HTTCHHHHHHHHTC
T ss_pred HhccHHHHHHHHHc
Confidence 44555444444443
No 313
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=24.71 E-value=2.8e+02 Score=22.88 Aligned_cols=223 Identities=12% Similarity=-0.004 Sum_probs=0.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc--CCCCCcchHHHHHHHHHhcCChh
Q 043144 126 IRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM--SVAPDVVTYNTILRTLCDSGKLN 203 (580)
Q Consensus 126 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~ 203 (580)
+...++.|+.+....+++.-.... .++..-.+.|..+ +..|+.+-+..+++.- ....+...-.+.+...+..|+.+
T Consensus 13 l~~A~~~g~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A-~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ 90 (240)
T 3eu9_A 13 IVKATQYGIYERCRELVEAGYDVR-QPDKENVTLLHWA-AINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLS 90 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHH-HHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHH
T ss_pred HHHHHHcCChHHHHHHHHcCCCcC-CCCCCCCCHHHHH-HHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHH
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHH--HHHHHHHhcCCHHHHHHHHHH
Q 043144 204 LAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYN--VLVNGICKEGRLDEAIKFLND 281 (580)
Q Consensus 204 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~ 281 (580)
-...+++. ...+......-...+...+..|+.+ +++.+.+.|..++..... +.+...+..+...+..+++.+
T Consensus 91 ~v~~Ll~~--g~~~~~~~~~g~t~l~~A~~~~~~~----~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~ 164 (240)
T 3eu9_A 91 MVVQLMKY--GADPSLIDGEGCSCIHLAAQFGHTS----IVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLT 164 (240)
T ss_dssp HHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHH
T ss_pred HHHHHHHc--CCCCcccCCCCCCHHHHHHHcCHHH----HHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHh
Q ss_pred hhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC
Q 043144 282 MPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCT 358 (580)
Q Consensus 282 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 358 (580)
....--..+...-...+...+..|+.+-+..+++. ...+......-...+....+.|+.+-+..+++...+.++.
T Consensus 165 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~ 239 (240)
T 3eu9_A 165 FNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEA--GANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYD 239 (240)
T ss_dssp TTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHH--TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC------
T ss_pred cCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhccCcC
No 314
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=24.18 E-value=4.7e+02 Score=24.93 Aligned_cols=54 Identities=19% Similarity=0.235 Sum_probs=33.1
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC-----HHHHHHHHHHHHhCC
Q 043144 443 KVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGK-----VDEAIKLFHDLERLG 496 (580)
Q Consensus 443 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~~ 496 (580)
+.++.+.|+..+.+|.+.|..|....-..+..+.-.-|. ...|...++.....|
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g 325 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVG 325 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSC
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhC
Confidence 457888899999999888866655554555555554443 333444444444444
No 315
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=23.41 E-value=83 Score=20.03 Aligned_cols=29 Identities=10% Similarity=0.081 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 043144 203 NLAMEVLHKQLEKECYPDVITYTILIEAT 231 (580)
Q Consensus 203 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 231 (580)
++|.+.|.+|++..-.+...+|...+...
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 34444555544433233334444444433
No 316
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=23.23 E-value=2.2e+02 Score=21.92 Aligned_cols=43 Identities=12% Similarity=0.045 Sum_probs=20.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 043144 368 LHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDG 410 (580)
Q Consensus 368 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 410 (580)
+..+...+..-.|.++++.+.+.++..+..|....+..+...|
T Consensus 28 l~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 28 LEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 3333333444445555555555444444554444445555444
No 317
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=22.48 E-value=70 Score=27.58 Aligned_cols=19 Identities=11% Similarity=-0.006 Sum_probs=8.5
Q ss_pred hcCCHhHHHHHHHHHHHcC
Q 043144 233 KESGVGQAMKLLDEMRNKG 251 (580)
Q Consensus 233 ~~g~~~~A~~~~~~~~~~~ 251 (580)
+.|+.+....+++.+.+.+
T Consensus 14 ~~g~~~~v~~ll~~l~~~~ 32 (260)
T 3jxi_A 14 SRGSPDGLEGLLSFLLTHK 32 (260)
T ss_dssp HHTCGGGGTTHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHhcC
Confidence 3444444444444444433
No 318
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=22.45 E-value=1e+02 Score=19.10 Aligned_cols=18 Identities=17% Similarity=0.429 Sum_probs=9.2
Q ss_pred HHHhcCC--HHHHHHHHHHH
Q 043144 545 GIAYEGL--AKEALDLLNQL 562 (580)
Q Consensus 545 ~~~~~g~--~~~A~~~~~~~ 562 (580)
++...|. .+.|.+++.+|
T Consensus 29 Alk~Tg~~Gle~AmewL~k~ 48 (54)
T 2cos_A 29 ALKQTGSRSIEAALEYISKM 48 (54)
T ss_dssp HHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHhCcccHHHHHHHHHHh
Confidence 3444444 55555555554
No 319
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=22.22 E-value=4.9e+02 Score=25.28 Aligned_cols=78 Identities=15% Similarity=0.017 Sum_probs=58.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 043144 434 YNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCK 513 (580)
Q Consensus 434 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 513 (580)
...+.+..-....++.|...|....... +-+...|+.|.-.....|+.-+|.-.|-+..-. ..|-..+...|...+.+
T Consensus 155 l~~LGDL~RY~~~~~~A~~~Y~~A~~~~-P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~-~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 155 LVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV-KFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS-SBCCHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHhC-CCCCchHHHHHHHHhcccccHHHHHHHHHHHhc-CCCChhHHHHHHHHHHH
Confidence 3445555556778899999999988763 446778999998888889888888777777643 35677777777776654
No 320
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=22.07 E-value=5.3e+02 Score=24.77 Aligned_cols=142 Identities=12% Similarity=0.057 Sum_probs=82.8
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 043144 409 DGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKL 488 (580)
Q Consensus 409 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 488 (580)
..+.+-|.++.. +.+.+--...|..-...+...|++++|.++--.... |+--+..|.+.+-.+=..-|...--+.+
T Consensus 342 l~n~~lA~~lA~---R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~Y 417 (494)
T 1bpo_A 342 LQNPDLALRMAV---RNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQY 417 (494)
T ss_dssp TCCHHHHHHHHH---HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHH
T ss_pred cCCHHHHHHHHH---hcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHH
Confidence 456665555543 344444555676667777888888888877665443 3444667766555544555666667777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043144 489 FHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLC 563 (580)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 563 (580)
|..+.+.| +.+..--..+++.-..+|+.+-..+.+++ ..+..++..=..+ +..+..-|..+|.+..
T Consensus 418 F~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~e---~KL~~SEeLGDlv-----k~~d~~LAl~IY~~a~ 483 (494)
T 1bpo_A 418 FGILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLKE---DKLECSEELGDLV-----KSVDPTLALSVYLRAN 483 (494)
T ss_dssp HHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH---TCSCCCHHHHHHH-----HHHCSHHHHHHHHHHC
T ss_pred HHHHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHhc---CCccccHHhHhhh-----hhcCHHHHHHHHHHcC
Confidence 77776655 33443333455555566665555444433 2345555543322 4456777777777653
No 321
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=21.92 E-value=3.1e+02 Score=22.02 Aligned_cols=23 Identities=9% Similarity=-0.018 Sum_probs=10.5
Q ss_pred HhcCChHHHHHHHHHHHHcCCCC
Q 043144 302 CSTGRWMDAERLLAEMVLKGCSP 324 (580)
Q Consensus 302 ~~~~~~~~a~~~~~~~~~~~~~~ 324 (580)
+..|+.+.-.++.+.+++.|..+
T Consensus 46 ~~~~~~~~~~~iv~~Ll~~Gadv 68 (186)
T 3t8k_A 46 LRNNNDEARYKISMFLINKGADI 68 (186)
T ss_dssp TTCSCHHHHHHHHHHHHHTTCCS
T ss_pred HHcCCcchHHHHHHHHHHCCCCC
Confidence 33444443444455555555443
No 322
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=21.86 E-value=3.2e+02 Score=22.05 Aligned_cols=186 Identities=8% Similarity=0.066 Sum_probs=0.0
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcCCCC
Q 043144 105 KFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERMSVAP 184 (580)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 184 (580)
..+..+++.-..++.......+..+.+.|+......+.+.+. .++...-...+.++...|+.+..-.+.+.+. .+
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~----~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~-d~ 88 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALK----DEDAWVRRAAADALGQIGDERAVEPLIKALK-DE 88 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTT----CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTT-CS
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHc----CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHc-CC
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 043144 185 DVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVN 264 (580)
Q Consensus 185 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 264 (580)
+..+-...+.++.+.+..+....+...+.+ ++...-...+.+..+.++.+....+...+... +..+-...+.
T Consensus 89 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d----~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~----~~~vr~~A~~ 160 (201)
T 3ltj_A 89 DGWVRQSAAVALGQIGDERAVEPLIKALKD----EDWFVRIAAAFALGEIGDERAVEPLIKALKDE----DGWVRQSAAD 160 (201)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTC----SSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCS----SHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC----CHHHHHHHHH
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCh
Q 043144 265 GICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRW 307 (580)
Q Consensus 265 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 307 (580)
++...|. +++...+..+.. .++...-...+.++.+....
T Consensus 161 aL~~~~~-~~~~~~L~~~l~---d~~~~vr~~A~~aL~~l~~~ 199 (201)
T 3ltj_A 161 ALGEIGG-ERVRAAMEKLAE---TGTGFARKVAVNYLETHKSL 199 (201)
T ss_dssp HHHHHCS-HHHHHHHHHHHH---HCCHHHHHHHHHHHHHCC--
T ss_pred HHHHhCc-hhHHHHHHHHHh---CCCHHHHHHHHHHHHHHHhh
No 323
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=21.82 E-value=3e+02 Score=21.83 Aligned_cols=55 Identities=11% Similarity=0.004 Sum_probs=40.1
Q ss_pred HHhCCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHH------HHHhcCCHHHHHHHHHHHHHc
Q 043144 476 LSREGKVDEAIKLFHDLERLGVRP--NVITYNSIML------GLCKARQTYRAIDILADMVTR 530 (580)
Q Consensus 476 ~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~------~~~~~g~~~~A~~~~~~~~~~ 530 (580)
+...|++-+|-++|+.+-.....+ ....|..||. ...+.|+...|..++.+....
T Consensus 42 lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 42 LYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 445599999999999986544444 4556677776 234579999999999998753
No 324
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=21.67 E-value=4.8e+02 Score=25.35 Aligned_cols=74 Identities=14% Similarity=-0.027 Sum_probs=36.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc--CCCCCcchHHHHHHHHHh
Q 043144 124 SLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM--SVAPDVVTYNTILRTLCD 198 (580)
Q Consensus 124 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~ 198 (580)
.+++.......++.|...|....... |.+...||.|+-.....|+.-+|.-.|-+. ...|-..+...|...+.+
T Consensus 157 ~LGDL~RY~~~~~~A~~~Y~~A~~~~-P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 157 HLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHHHHHHHHhC-CCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 34444444445555555555555543 444445555555555555555555444443 223444455555555443
No 325
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=21.62 E-value=2.2e+02 Score=21.64 Aligned_cols=58 Identities=16% Similarity=0.105 Sum_probs=30.4
Q ss_pred hhCCCCCCHhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 043144 353 PKHGCTPNSLSYNPVLHGFCKEK-KMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGK 411 (580)
Q Consensus 353 ~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 411 (580)
.+.|..++.. -..++..+...+ ..-.|.++++.+.+.++..+..|...-+..+...|-
T Consensus 10 ~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 10 RKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 3344443332 233444444444 455666777776666555566655555556655554
No 326
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=21.22 E-value=2.1e+02 Score=26.08 Aligned_cols=23 Identities=9% Similarity=0.338 Sum_probs=13.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhh
Q 043144 261 VLVNGICKEGRLDEAIKFLNDMP 283 (580)
Q Consensus 261 ~l~~~~~~~g~~~~A~~~~~~~~ 283 (580)
.++.-|...|+.++|...++++.
T Consensus 16 ~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 16 AIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCHHHHHHHHHHcC
Confidence 34555555566666666665554
No 327
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=21.09 E-value=1.8e+02 Score=20.53 Aligned_cols=50 Identities=14% Similarity=0.080 Sum_probs=23.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-----HhcCCHHHHHHHHHHHHh
Q 043144 513 KARQTYRAIDILADMVTRSCKPTEATYTILIEGI-----AYEGLAKEALDLLNQLCS 564 (580)
Q Consensus 513 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~~~ 564 (580)
..|++-+|-+++++.-...-.|....|..|+... .+.|+. |.+++++...
T Consensus 13 n~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 13 RAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred hCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 3466666666666655443112233444444322 234555 5555555543
No 328
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=20.92 E-value=3.3e+02 Score=21.89 Aligned_cols=22 Identities=5% Similarity=-0.090 Sum_probs=9.3
Q ss_pred hcCChhHHHHHHHHHHhCCCCC
Q 043144 198 DSGKLNLAMEVLHKQLEKECYP 219 (580)
Q Consensus 198 ~~g~~~~A~~~~~~~~~~~~~~ 219 (580)
..|+.+.-.++.+.+++.|..+
T Consensus 47 ~~~~~~~~~~iv~~Ll~~Gadv 68 (186)
T 3t8k_A 47 RNNNDEARYKISMFLINKGADI 68 (186)
T ss_dssp TCSCHHHHHHHHHHHHHTTCCS
T ss_pred HcCCcchHHHHHHHHHHCCCCC
Confidence 3444333334444444444433
No 329
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=20.24 E-value=1.8e+02 Score=23.05 Aligned_cols=68 Identities=4% Similarity=-0.045 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHh-CCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCC
Q 043144 101 EEGFKFLESMVY-HGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDS--GAVPDVITYNVLISGYCRLGE 169 (580)
Q Consensus 101 ~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~ 169 (580)
+.+++-+.+.++ .|...+. .-..++..+...+..-.|.++++.+.+. ++..+..|-..-+..+...|-
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 444444444433 3444433 3445566666666777788888888766 545555555555556666554
Done!