BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043145
(134 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q4UJB1|HSPC4_RICFE Small heat shock protein C4 OS=Rickettsia felis (strain ATCC
VR-1525 / URRWXCal2) GN=hspc4-1 PE=3 SV=1
Length = 163
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 42/93 (45%), Gaps = 10/93 (10%)
Query: 31 DIGECEDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQTQ 90
DI E E Y V LPGV +D+ D + + I + E+S K + M+ +
Sbjct: 63 DITENESEYHLEVELPGVTQDNIDLKIDSN------ILTIDGKKEQSTEKKDHNYHMKER 116
Query: 91 NLCPPGHFSISFQLPGPVNPEQFSGNFGIDGIL 123
G FS S LP V+ E + NF DGIL
Sbjct: 117 YY---GSFSRSISLPSNVDEEHVTANFK-DGIL 145
>sp|P46516|HSP21_HELAN 17.9 kDa class II heat shock protein OS=Helianthus annuus
GN=HSP17.9 PE=2 SV=1
Length = 160
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 11/94 (11%)
Query: 31 DIGECEDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKGVTTT-GEKSVYKYSQVFEMQT 89
D+ EC +SY+F V +PG+K GD +V+ ++I G EK KY ++
Sbjct: 54 DVKECPNSYVFIVDMPGLK--SGDIKVQVERDNVLVISGKRNREEEKEGVKYVRMERRM- 110
Query: 90 QNLCPPGHFSISFQLPGPVNPEQFSGNFGIDGIL 123
G F F LP N ++ S DG+L
Sbjct: 111 ------GKFMKKFALPEDANTDKISA-ICQDGVL 137
>sp|Q01545|HSP22_IPONI 18.8 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-2 PE=2
SV=1
Length = 167
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Query: 31 DIGECEDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQTQ 90
D+ E +SY+F +PGVK + +V+ +++ G T EK + M+ +
Sbjct: 59 DVKEYPNSYVFIADMPGVKA--AEIKVQVEDDNVLVVSGERTEREKDEKDGVKYLRMERR 116
Query: 91 NLCPPGHFSISFQLPGPVNPEQFSGNFGIDGILE 124
G F F LP N E + + DG+L+
Sbjct: 117 ----VGKFMRKFVLPENANVEAINAVYQ-DGVLQ 145
>sp|Q5NRB3|HCP_ZYMMO Hydroxylamine reductase OS=Zymomonas mobilis subsp. mobilis (strain
ATCC 31821 / ZM4 / CP4) GN=hcp PE=3 SV=1
Length = 545
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 21 GKVGPVVGLVDIGECEDSY-MFRVALPGVKRDDGD 54
GK+G + L+D+G+C DSY RVAL + D D
Sbjct: 435 GKIGDLPRLLDMGQCNDSYSAIRVALALAEAFDTD 469
>sp|O81822|HS177_ARATH 17.7 kDa class II heat shock protein OS=Arabidopsis thaliana
GN=HSP17.7 PE=2 SV=1
Length = 156
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 8/94 (8%)
Query: 31 DIGECEDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQTQ 90
D+ E D+Y+F V +PG+K D+ E + + V K E K+ ++
Sbjct: 49 DVIEHPDAYVFAVDMPGIKGDEIQVQIENENVLVVSGKRQRDNKENEGVKFVRMERRM-- 106
Query: 91 NLCPPGHFSISFQLPGPVNPEQFSGNFGIDGILE 124
G F FQLP + E+ S DG+L+
Sbjct: 107 -----GKFMRKFQLPDNADLEKISAACN-DGVLK 134
>sp|A8FYR3|RF3_SHESH Peptide chain release factor 3 OS=Shewanella sediminis (strain
HAW-EB3) GN=prfC PE=3 SV=1
Length = 526
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 92 LCPPGHFSISFQLPGPVNPEQFS---GNFGIDGILEGIV 127
L F + L G + P F GNFG+D IL+GIV
Sbjct: 232 LGASNEFDLELFLAGELTPVYFGTALGNFGVDHILDGIV 270
>sp|P19242|HSP21_PEA 17.1 kDa class II heat shock protein OS=Pisum sativum GN=HSP17.7
PE=2 SV=1
Length = 152
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 11/94 (11%)
Query: 31 DIGECEDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIK-GVTTTGEKSVYKYSQVFEMQT 89
D+ E +SY+F V +PGVK GD +V+ +LI EK KY +M+
Sbjct: 46 DVKEHPNSYVFMVDMPGVKS--GDIKVQVEDENVLLISGERKREEEKEGVKY---LKMER 100
Query: 90 QNLCPPGHFSISFQLPGPVNPEQFSGNFGIDGIL 123
+ G F LP N E S DG+L
Sbjct: 101 R----IGKLMRKFVLPENANIEAISA-ISQDGVL 129
>sp|B0TQ95|RF3_SHEHH Peptide chain release factor 3 OS=Shewanella halifaxensis (strain
HAW-EB4) GN=prfC PE=3 SV=1
Length = 526
Score = 29.6 bits (65), Expect = 5.2, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 98 FSISFQLPGPVNPEQFS---GNFGIDGILEGIV 127
F + L G + P F GNFG+D IL+GIV
Sbjct: 238 FDLELFLKGELTPVYFGTALGNFGVDHILDGIV 270
>sp|P05477|HSP21_SOYBN 17.9 kDa class II heat shock protein OS=Glycine max GN=HSP17.9-D
PE=3 SV=1
Length = 159
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 9/93 (9%)
Query: 31 DIGECEDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQTQ 90
D+ E +SY+F + +PG+K GD +V+ +LI G E+ + ++ M+ +
Sbjct: 53 DVKEYPNSYVFEIDMPGLK--SGDIKVQVEDDNLLLICGERKRDEEK--EGAKYLRMERR 108
Query: 91 NLCPPGHFSISFQLPGPVNPEQFSGNFGIDGIL 123
G F LP N + S DG+L
Sbjct: 109 ----VGKLMRKFVLPENANTDAISA-VCQDGVL 136
>sp|O14368|HSP16_SCHPO Heat shock protein 16 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=hsp16 PE=2 SV=1
Length = 143
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
Query: 30 VDIGECEDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQT 89
+D+ E +D+ V LPGVK++D + GK+ I G K+ Q
Sbjct: 39 IDVHEGKDTVSVDVELPGVKKEDVQVHYD---SGKLTISGEVVNERKNESTEGN----QR 91
Query: 90 QNLCPPGHFSISFQLPGPVNPEQFSGNFGIDGIL 123
+ G FS + +P ++ ++ NF +G+L
Sbjct: 92 WSERRFGSFSRTITIPAKIDADRIEANFS-NGLL 124
>sp|B1KRQ3|RF3_SHEWM Peptide chain release factor 3 OS=Shewanella woodyi (strain ATCC
51908 / MS32) GN=prfC PE=3 SV=1
Length = 526
Score = 28.9 bits (63), Expect = 9.0, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 98 FSISFQLPGPVNPEQFS---GNFGIDGILEGIV 127
F + L G + P F GNFG+D IL+GIV
Sbjct: 238 FDLEMFLAGELTPVFFGTALGNFGVDHILDGIV 270
>sp|A3QGT8|RF3_SHELP Peptide chain release factor 3 OS=Shewanella loihica (strain ATCC
BAA-1088 / PV-4) GN=prfC PE=3 SV=1
Length = 526
Score = 28.9 bits (63), Expect = 9.0, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 66 LIKGVTTTG-EKSVYKYSQVFEMQTQNLCPPGH-FSISFQLPGPVNPEQFS---GNFGID 120
+IKG+ ++++ Y+Q + + + H F + L G + P F GNFG+D
Sbjct: 204 VIKGLDNPELDEAIGSYAQDLRDEMELVLGASHEFDLEAFLKGELTPVFFGTALGNFGVD 263
Query: 121 GILEGIV 127
IL+GIV
Sbjct: 264 HILDGIV 270
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.137 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,242,201
Number of Sequences: 539616
Number of extensions: 2206770
Number of successful extensions: 4122
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 4121
Number of HSP's gapped (non-prelim): 17
length of query: 134
length of database: 191,569,459
effective HSP length: 100
effective length of query: 34
effective length of database: 137,607,859
effective search space: 4678667206
effective search space used: 4678667206
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)