Query 043145
Match_columns 134
No_of_seqs 192 out of 1061
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 13:19:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043145.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043145hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0071 IbpA Molecular chapero 100.0 1.2E-28 2.6E-33 177.0 13.0 99 25-133 38-136 (146)
2 PRK11597 heat shock chaperone 100.0 5.5E-28 1.2E-32 172.9 12.9 94 24-131 29-123 (142)
3 cd06472 ACD_ScHsp26_like Alpha 100.0 6.3E-28 1.4E-32 160.7 11.5 91 29-129 1-92 (92)
4 PRK10743 heat shock protein Ib 100.0 8.9E-28 1.9E-32 171.0 12.3 91 27-131 34-125 (137)
5 cd06471 ACD_LpsHSP_like Group 99.9 2.9E-27 6.2E-32 157.6 11.1 93 28-129 1-93 (93)
6 cd06470 ACD_IbpA-B_like Alpha- 99.9 7.6E-26 1.7E-30 150.4 11.8 89 28-129 1-90 (90)
7 cd06497 ACD_alphaA-crystallin_ 99.9 1.3E-24 2.7E-29 143.6 10.2 82 31-129 4-86 (86)
8 PF00011 HSP20: Hsp20/alpha cr 99.9 6.6E-24 1.4E-28 143.0 12.8 91 31-133 1-91 (102)
9 cd06498 ACD_alphaB-crystallin_ 99.9 3.8E-24 8.3E-29 140.7 10.0 82 32-130 2-84 (84)
10 cd06478 ACD_HspB4-5-6 Alpha-cr 99.9 5.7E-24 1.2E-28 139.5 10.1 83 31-129 1-83 (83)
11 cd06479 ACD_HspB7_like Alpha c 99.9 8E-24 1.7E-28 138.3 9.5 79 31-129 2-81 (81)
12 cd06475 ACD_HspB1_like Alpha c 99.9 1.1E-23 2.5E-28 139.0 10.2 83 29-128 2-85 (86)
13 cd06476 ACD_HspB2_like Alpha c 99.9 2E-23 4.3E-28 137.1 9.8 81 32-129 2-83 (83)
14 cd06481 ACD_HspB9_like Alpha c 99.9 6.5E-23 1.4E-27 135.7 9.8 83 34-129 4-87 (87)
15 cd06482 ACD_HspB10 Alpha cryst 99.9 1.4E-22 3E-27 134.1 9.7 81 35-128 6-86 (87)
16 cd06464 ACD_sHsps-like Alpha-c 99.9 4.7E-22 1E-26 129.4 11.0 88 31-129 1-88 (88)
17 cd06477 ACD_HspB3_Like Alpha c 99.9 3.9E-22 8.4E-27 130.9 9.7 80 33-128 3-82 (83)
18 cd06526 metazoan_ACD Alpha-cry 99.9 9.2E-22 2E-26 128.7 9.1 78 35-129 5-83 (83)
19 cd06480 ACD_HspB8_like Alpha-c 99.8 1.3E-19 2.9E-24 120.7 9.0 83 31-129 9-91 (91)
20 KOG0710 Molecular chaperone (s 99.8 1.1E-18 2.3E-23 131.0 6.1 102 23-132 80-182 (196)
21 KOG3591 Alpha crystallins [Pos 99.7 1E-15 2.2E-20 112.8 10.3 89 28-132 63-151 (173)
22 cd00298 ACD_sHsps_p23-like Thi 99.6 5.3E-15 1.1E-19 92.8 9.0 80 32-129 1-80 (80)
23 cd06469 p23_DYX1C1_like p23_li 99.4 1.5E-12 3.3E-17 83.3 9.1 71 32-132 1-71 (78)
24 PF05455 GvpH: GvpH; InterPro 99.2 1.9E-10 4E-15 84.7 11.6 82 24-133 88-171 (177)
25 cd06463 p23_like Proteins cont 99.2 2.5E-10 5.3E-15 72.9 9.2 75 33-132 2-76 (84)
26 cd06466 p23_CS_SGT1_like p23_l 99.0 3.2E-09 7E-14 68.5 7.6 77 31-132 1-77 (84)
27 PF04969 CS: CS domain; Inter 98.7 6E-07 1.3E-11 56.6 10.3 77 28-129 1-79 (79)
28 cd06465 p23_hB-ind1_like p23_l 98.5 2.8E-06 6E-11 57.7 10.6 78 28-131 1-78 (108)
29 PF08190 PIH1: pre-RNA process 98.3 7.6E-06 1.6E-10 65.0 10.5 65 36-128 260-327 (328)
30 cd06489 p23_CS_hSgt1_like p23_ 98.3 9.4E-06 2E-10 52.6 8.2 77 31-132 1-77 (84)
31 cd06467 p23_NUDC_like p23_like 98.2 2.7E-05 5.8E-10 50.2 8.9 75 30-132 1-77 (85)
32 cd06488 p23_melusin_like p23_l 98.1 7.2E-05 1.6E-09 49.0 10.3 79 29-132 2-80 (87)
33 cd06468 p23_CacyBP p23_like do 98.1 6.9E-05 1.5E-09 49.1 10.0 79 29-132 3-85 (92)
34 cd06493 p23_NUDCD1_like p23_NU 98.1 6.2E-05 1.3E-09 49.0 9.4 75 30-132 1-77 (85)
35 cd06494 p23_NUDCD2_like p23-li 97.8 0.00035 7.5E-09 46.6 9.2 77 27-132 5-83 (93)
36 cd00237 p23 p23 binds heat sho 97.5 0.0023 5.1E-08 43.6 10.4 78 28-132 2-79 (106)
37 KOG1309 Suppressor of G2 allel 97.2 0.0014 3E-08 48.7 6.5 80 27-131 3-82 (196)
38 PLN03088 SGT1, suppressor of 97.2 0.0029 6.4E-08 51.3 8.9 80 28-132 157-236 (356)
39 cd06490 p23_NCB5OR p23_like do 97.0 0.025 5.5E-07 36.9 10.3 78 30-133 1-81 (87)
40 cd06495 p23_NUDCD3_like p23-li 96.5 0.058 1.2E-06 36.5 9.7 81 27-132 4-87 (102)
41 cd06492 p23_mNUDC_like p23-lik 96.4 0.063 1.4E-06 35.1 9.0 74 31-132 2-79 (87)
42 KOG1667 Zn2+-binding protein M 86.7 4.7 0.0001 31.9 7.5 82 29-134 216-297 (320)
43 cd06482 ACD_HspB10 Alpha cryst 84.4 2.6 5.7E-05 27.5 4.5 35 95-131 7-41 (87)
44 COG5091 SGT1 Suppressor of G2 79.9 1.1 2.5E-05 35.8 1.7 80 28-131 177-256 (368)
45 cd06471 ACD_LpsHSP_like Group 76.0 4.1 8.8E-05 26.3 3.3 31 36-69 61-91 (93)
46 cd06478 ACD_HspB4-5-6 Alpha-cr 75.4 8.3 0.00018 24.6 4.6 34 95-130 6-39 (83)
47 PF12992 DUF3876: Domain of un 75.3 9.9 0.00021 25.4 5.0 39 27-68 25-68 (95)
48 PF13349 DUF4097: Domain of un 73.9 27 0.00059 24.3 9.7 81 29-126 67-147 (166)
49 cd06470 ACD_IbpA-B_like Alpha- 73.8 8.6 0.00019 24.8 4.4 34 96-131 11-44 (90)
50 cd06477 ACD_HspB3_Like Alpha c 73.8 10 0.00022 24.5 4.7 31 38-70 51-82 (83)
51 cd06479 ACD_HspB7_like Alpha c 73.6 9.5 0.00021 24.5 4.5 34 96-131 8-41 (81)
52 KOG3158 HSP90 co-chaperone p23 73.6 21 0.00046 26.5 6.8 78 26-130 6-83 (180)
53 KOG2265 Nuclear distribution p 71.8 39 0.00084 25.2 9.1 82 22-131 13-96 (179)
54 cd06526 metazoan_ACD Alpha-cry 71.2 9.5 0.00021 24.1 4.1 33 97-131 8-40 (83)
55 cd06472 ACD_ScHsp26_like Alpha 70.0 6.7 0.00015 25.3 3.2 32 35-69 58-90 (92)
56 PF04972 BON: BON domain; Int 69.9 8.3 0.00018 22.8 3.4 27 46-75 12-38 (64)
57 cd06480 ACD_HspB8_like Alpha-c 69.4 14 0.00029 24.4 4.6 31 37-69 58-89 (91)
58 cd06469 p23_DYX1C1_like p23_li 68.9 11 0.00025 23.0 4.0 32 37-71 36-68 (78)
59 PRK10743 heat shock protein Ib 67.9 12 0.00026 26.4 4.4 33 96-130 45-77 (137)
60 cd06476 ACD_HspB2_like Alpha c 64.1 17 0.00037 23.3 4.2 29 38-69 51-81 (83)
61 cd06498 ACD_alphaB-crystallin_ 63.0 13 0.00029 23.8 3.5 31 38-71 51-83 (84)
62 PF00011 HSP20: Hsp20/alpha cr 62.1 24 0.00051 22.8 4.7 34 95-130 6-39 (102)
63 cd06497 ACD_alphaA-crystallin_ 59.8 23 0.00051 22.7 4.3 34 95-130 9-42 (86)
64 cd06464 ACD_sHsps-like Alpha-c 58.2 26 0.00056 21.5 4.2 34 96-131 7-40 (88)
65 PF01954 DUF104: Protein of un 56.3 8.5 0.00018 23.5 1.6 14 111-125 3-16 (60)
66 cd02175 GH16_lichenase lichena 55.3 39 0.00085 25.1 5.4 49 50-106 31-79 (212)
67 PRK11597 heat shock chaperone 53.3 30 0.00066 24.6 4.3 33 96-130 43-75 (142)
68 PRK05518 rpl6p 50S ribosomal p 52.3 70 0.0015 23.7 6.3 18 50-70 13-30 (180)
69 TIGR03653 arch_L6P archaeal ri 51.5 85 0.0018 23.0 6.5 18 50-70 7-24 (170)
70 PF14913 DPCD: DPCD protein fa 51.4 1E+02 0.0023 23.2 8.6 78 27-131 86-170 (194)
71 PTZ00027 60S ribosomal protein 48.7 83 0.0018 23.5 6.2 18 50-70 13-30 (190)
72 cd00503 Frataxin Frataxin is a 46.6 21 0.00046 24.0 2.5 18 111-129 28-45 (105)
73 TIGR03654 L6_bact ribosomal pr 46.5 96 0.0021 22.7 6.2 18 50-70 11-28 (175)
74 KOG3413 Mitochondrial matrix p 45.9 11 0.00023 27.3 1.0 22 106-128 67-88 (156)
75 PRK00446 cyaY frataxin-like pr 45.8 21 0.00046 24.1 2.4 18 112-130 28-45 (105)
76 TIGR03421 FeS_CyaY iron donor 45.6 21 0.00045 24.0 2.3 17 112-129 26-42 (102)
77 cd02180 GH16_fungal_KRE6_gluca 45.4 81 0.0018 25.2 6.0 49 49-106 39-90 (295)
78 PF07873 YabP: YabP family; I 42.3 25 0.00053 21.5 2.1 22 48-72 23-44 (66)
79 PRK05498 rplF 50S ribosomal pr 41.3 1.1E+02 0.0025 22.3 5.9 18 50-70 12-29 (178)
80 PF01491 Frataxin_Cyay: Fratax 40.0 27 0.00059 23.6 2.3 18 111-129 30-47 (109)
81 cd06494 p23_NUDCD2_like p23-li 39.7 55 0.0012 21.4 3.6 30 97-127 16-45 (93)
82 COG4004 Uncharacterized protei 39.1 86 0.0019 20.9 4.4 34 30-70 26-59 (96)
83 cd02178 GH16_beta_agarase Beta 39.1 69 0.0015 24.6 4.7 43 61-106 63-109 (258)
84 KOG3260 Calcyclin-binding prot 38.9 52 0.0011 24.8 3.7 38 29-69 76-113 (224)
85 PF08308 PEGA: PEGA domain; I 38.1 89 0.0019 18.7 5.4 39 30-70 27-66 (71)
86 CHL00140 rpl6 ribosomal protei 37.7 1.1E+02 0.0025 22.4 5.5 18 50-70 12-29 (178)
87 TIGR03422 mito_frataxin fratax 37.2 28 0.00061 23.2 1.9 15 114-129 30-44 (97)
88 PRK11198 LysM domain/BON super 36.4 50 0.0011 23.4 3.3 26 46-74 38-63 (147)
89 cd08023 GH16_laminarinase_like 35.4 1.5E+02 0.0032 22.1 6.0 54 45-107 32-91 (235)
90 TIGR02856 spore_yqfC sporulati 35.0 34 0.00073 22.2 2.0 23 47-72 40-62 (85)
91 PTZ00179 60S ribosomal protein 34.8 1.7E+02 0.0036 21.9 6.0 18 50-70 12-29 (189)
92 COG0071 IbpA Molecular chapero 34.4 1.1E+02 0.0024 21.3 4.8 34 37-73 100-134 (146)
93 PF05455 GvpH: GvpH; InterPro 32.8 1.8E+02 0.004 21.6 5.8 38 35-75 134-171 (177)
94 PRK01433 hscA chaperone protei 31.6 2E+02 0.0043 25.2 6.8 44 29-72 412-466 (595)
95 TIGR02892 spore_yabP sporulati 30.7 44 0.00096 21.7 2.0 21 48-71 22-42 (85)
96 PF12080 GldM_C: GldM C-termin 30.2 71 0.0015 23.6 3.3 37 30-69 7-43 (181)
97 COG4856 Uncharacterized protei 29.9 2.1E+02 0.0045 24.0 6.2 36 29-72 53-89 (403)
98 PF08845 SymE_toxin: Toxin Sym 28.0 83 0.0018 18.8 2.8 23 43-68 33-56 (57)
99 PRK10568 periplasmic protein; 26.9 95 0.0021 23.2 3.6 27 45-74 72-98 (203)
100 PF06977 SdiA-regulated: SdiA- 26.1 3.1E+02 0.0068 21.2 8.0 67 43-126 15-81 (248)
101 smart00675 DM11 Domains in hyp 25.8 2E+02 0.0043 21.0 4.9 23 47-72 29-51 (164)
102 cd00413 Glyco_hydrolase_16 gly 25.2 2.6E+02 0.0057 20.1 5.9 51 48-107 27-79 (210)
103 COG2880 Uncharacterized protei 23.5 7.7 0.00017 24.3 -2.4 12 112-124 6-17 (67)
104 cd02182 GH16_Strep_laminarinas 23.0 2.8E+02 0.006 21.2 5.6 19 50-73 45-64 (259)
105 KOG0100 Molecular chaperones G 22.9 2.2E+02 0.0047 24.6 5.2 44 29-72 469-523 (663)
106 PF00722 Glyco_hydro_16: Glyco 22.7 2.7E+02 0.0059 19.6 5.2 49 49-107 10-59 (185)
107 PRK01379 cyaY frataxin-like pr 21.7 85 0.0018 21.2 2.2 16 112-128 29-44 (103)
108 PTZ00186 heat shock 70 kDa pre 21.5 2.1E+02 0.0046 25.4 5.2 44 29-72 457-511 (657)
109 PF11033 ComJ: Competence prot 21.0 3.1E+02 0.0066 19.3 5.9 33 96-130 63-97 (125)
No 1
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.2e-28 Score=176.98 Aligned_cols=99 Identities=25% Similarity=0.426 Sum_probs=90.4
Q ss_pred CceeeeeEEEeCCEEEEEEEcCCCCCCCEEEEEEeCCCCEEEEEEEEEcccccccccccEEEEEeecCCCCeEEEEEEEC
Q 043145 25 PVVGLVDIGECEDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQTQNLCPPGHFSISFQL 104 (134)
Q Consensus 25 ~~~P~~di~e~~~~~~i~~~lPGv~~edI~V~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~~~~~g~F~r~i~L 104 (134)
.+.|+|||+++++.|.|.++||||+++||+|++ .++.|+|+|++..... .+...++++|+. +|.|+|+|+|
T Consensus 38 ~~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~---~~~~l~I~g~~~~~~~--~~~~~~~~~e~~----~~~f~r~~~L 108 (146)
T COG0071 38 TGTPPVDIEETDDEYRITAELPGVDKEDIEITV---EGNTLTIRGEREEEEE--EEEEGYLRRERA----YGEFERTFRL 108 (146)
T ss_pred CCCCcEEEEEcCCEEEEEEEcCCCChHHeEEEE---ECCEEEEEEEeccccc--ccCCceEEEEEE----eeeEEEEEEC
Confidence 478999999999999999999999999999988 9999999999986332 456778999999 8999999999
Q ss_pred CCCCccCceEEEeCCCCEEEEEEeecCCC
Q 043145 105 PGPVNPEQFSGNFGIDGILEGIVMKQKHT 133 (134)
Q Consensus 105 P~~v~~~~i~A~~~~nGvL~I~lPK~~~~ 133 (134)
|..|+++.++|+| .||||+|+|||.+++
T Consensus 109 p~~v~~~~~~A~~-~nGvL~I~lpk~~~~ 136 (146)
T COG0071 109 PEKVDPEVIKAKY-KNGLLTVTLPKAEPE 136 (146)
T ss_pred cccccccceeeEe-eCcEEEEEEeccccc
Confidence 9999999999999 599999999998763
No 2
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.96 E-value=5.5e-28 Score=172.91 Aligned_cols=94 Identities=19% Similarity=0.316 Sum_probs=83.6
Q ss_pred CCceeeeeEEE-eCCEEEEEEEcCCCCCCCEEEEEEeCCCCEEEEEEEEEcccccccccccEEEEEeecCCCCeEEEEEE
Q 043145 24 GPVVGLVDIGE-CEDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQTQNLCPPGHFSISF 102 (134)
Q Consensus 24 ~~~~P~~di~e-~~~~~~i~~~lPGv~~edI~V~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~~~~~g~F~r~i 102 (134)
...+|++||+| ++++|+|.++||||+++||+|++ .++.|+|+|+++.. .+..+++++||+ +|+|+|+|
T Consensus 29 ~~~~P~vdI~e~~~~~y~v~adlPGv~kedi~V~v---~~~~LtI~ge~~~~----~~~~~~~~~Er~----~g~F~R~f 97 (142)
T PRK11597 29 SQSFPPYNIEKSDDNHYRITLALAGFRQEDLDIQL---EGTRLTVKGTPEQP----EKEVKWLHQGLV----NQPFSLSF 97 (142)
T ss_pred cCCCCcEEEEEcCCCEEEEEEEeCCCCHHHeEEEE---ECCEEEEEEEEccc----cCCCcEEEEEEe----CcEEEEEE
Confidence 34579999998 57899999999999999999988 99999999997632 235679999998 99999999
Q ss_pred ECCCCCccCceEEEeCCCCEEEEEEeecC
Q 043145 103 QLPGPVNPEQFSGNFGIDGILEGIVMKQK 131 (134)
Q Consensus 103 ~LP~~v~~~~i~A~~~~nGvL~I~lPK~~ 131 (134)
.||.+||.+ +|+| +||||+|+|||..
T Consensus 98 ~LP~~vd~~--~A~~-~nGVL~I~lPK~~ 123 (142)
T PRK11597 98 TLAENMEVS--GATF-VNGLLHIDLIRNE 123 (142)
T ss_pred ECCCCcccC--cCEE-cCCEEEEEEeccC
Confidence 999999998 7999 5999999999963
No 3
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.95 E-value=6.3e-28 Score=160.72 Aligned_cols=91 Identities=24% Similarity=0.381 Sum_probs=81.9
Q ss_pred eeeEEEeCCEEEEEEEcCCCCCCCEEEEEEeCCC-CEEEEEEEEEcccccccccccEEEEEeecCCCCeEEEEEEECCCC
Q 043145 29 LVDIGECEDSYMFRVALPGVKRDDGDFSCEVDPM-GKVLIKGVTTTGEKSVYKYSQVFEMQTQNLCPPGHFSISFQLPGP 107 (134)
Q Consensus 29 ~~di~e~~~~~~i~~~lPGv~~edI~V~v~~~~~-~~L~I~g~~~~~~~~~~~~~~~~~~e~~~~~~~g~F~r~i~LP~~ 107 (134)
++||+|++++|+|.++||||+++||+|++ .+ +.|+|+|+++.... .....++++||. +|.|.|+|+||.+
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v---~~~~~L~I~g~~~~~~~--~~~~~~~~~e~~----~g~f~r~i~LP~~ 71 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEV---EDGRVLRISGERKKEEE--KKGDDWHRVERS----SGRFVRRFRLPEN 71 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEE---eCCCEEEEEEEeccccc--ccCCCEEEEEEe----ccEEEEEEECCCC
Confidence 47999999999999999999999999987 75 58999999875443 346678899998 8999999999999
Q ss_pred CccCceEEEeCCCCEEEEEEee
Q 043145 108 VNPEQFSGNFGIDGILEGIVMK 129 (134)
Q Consensus 108 v~~~~i~A~~~~nGvL~I~lPK 129 (134)
|+.+.|+|.| .||||+|++||
T Consensus 72 v~~~~i~A~~-~nGvL~I~lPK 92 (92)
T cd06472 72 ADADEVKAFL-ENGVLTVTVPK 92 (92)
T ss_pred CCHHHCEEEE-ECCEEEEEecC
Confidence 9999999999 59999999998
No 4
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.95 E-value=8.9e-28 Score=171.02 Aligned_cols=91 Identities=15% Similarity=0.240 Sum_probs=81.6
Q ss_pred eeeeeEEE-eCCEEEEEEEcCCCCCCCEEEEEEeCCCCEEEEEEEEEcccccccccccEEEEEeecCCCCeEEEEEEECC
Q 043145 27 VGLVDIGE-CEDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQTQNLCPPGHFSISFQLP 105 (134)
Q Consensus 27 ~P~~di~e-~~~~~~i~~~lPGv~~edI~V~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~~~~~g~F~r~i~LP 105 (134)
.|++||++ ++++|+|.++||||+|+||+|++ .++.|+|+|+++... +..+++++||. +|+|.|+|.||
T Consensus 34 ~p~~di~ee~~~~~~v~aelPGv~kedi~V~v---~~~~LtI~ge~~~~~----~~~~~~~~Er~----~g~F~R~~~LP 102 (137)
T PRK10743 34 YPPYNVELVDENHYRIAIAVAGFAESELEITA---QDNLLVVKGAHADEQ----KERTYLYQGIA----ERNFERKFQLA 102 (137)
T ss_pred CCcEEEEEcCCCEEEEEEECCCCCHHHeEEEE---ECCEEEEEEEECccc----cCCcEEEEEEE----CCEEEEEEECC
Confidence 48999995 89999999999999999999988 999999999976432 35668899999 89999999999
Q ss_pred CCCccCceEEEeCCCCEEEEEEeecC
Q 043145 106 GPVNPEQFSGNFGIDGILEGIVMKQK 131 (134)
Q Consensus 106 ~~v~~~~i~A~~~~nGvL~I~lPK~~ 131 (134)
.+||.+ +|+| +||||+|+|||.+
T Consensus 103 ~~Vd~~--~A~~-~dGVL~I~lPK~~ 125 (137)
T PRK10743 103 ENIHVR--GANL-VNGLLYIDLERVI 125 (137)
T ss_pred CCcccC--cCEE-eCCEEEEEEeCCC
Confidence 999998 5999 5999999999963
No 5
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.95 E-value=2.9e-27 Score=157.58 Aligned_cols=93 Identities=27% Similarity=0.408 Sum_probs=82.6
Q ss_pred eeeeEEEeCCEEEEEEEcCCCCCCCEEEEEEeCCCCEEEEEEEEEcccccccccccEEEEEeecCCCCeEEEEEEECCCC
Q 043145 28 GLVDIGECEDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQTQNLCPPGHFSISFQLPGP 107 (134)
Q Consensus 28 P~~di~e~~~~~~i~~~lPGv~~edI~V~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~~~~~g~F~r~i~LP~~ 107 (134)
|++||+|+++.|+|.++|||++++||+|++ .++.|+|+|+++...+......+++++||. +|.|.|+|.|| +
T Consensus 1 ~~~di~e~~~~~~i~~~lPGv~~edi~v~~---~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~----~g~f~r~~~lp-~ 72 (93)
T cd06471 1 MKTDIKETDDEYIVEADLPGFKKEDIKLDY---KDGYLTISAKRDESKDEKDKKGNYIRRERY----YGSFSRSFYLP-N 72 (93)
T ss_pred CceeEEEcCCEEEEEEECCCCCHHHeEEEE---ECCEEEEEEEEccccccccccCCEEEEeee----ccEEEEEEECC-C
Confidence 478999999999999999999999999988 999999999998543322334578999998 89999999999 7
Q ss_pred CccCceEEEeCCCCEEEEEEee
Q 043145 108 VNPEQFSGNFGIDGILEGIVMK 129 (134)
Q Consensus 108 v~~~~i~A~~~~nGvL~I~lPK 129 (134)
++.+.|+|+| .||+|+|++||
T Consensus 73 v~~~~i~A~~-~dGvL~I~lPK 93 (93)
T cd06471 73 VDEEEIKAKY-ENGVLKITLPK 93 (93)
T ss_pred CCHHHCEEEE-ECCEEEEEEcC
Confidence 9999999999 59999999998
No 6
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.94 E-value=7.6e-26 Score=150.36 Aligned_cols=89 Identities=17% Similarity=0.274 Sum_probs=80.2
Q ss_pred eeeeEEEeC-CEEEEEEEcCCCCCCCEEEEEEeCCCCEEEEEEEEEcccccccccccEEEEEeecCCCCeEEEEEEECCC
Q 043145 28 GLVDIGECE-DSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQTQNLCPPGHFSISFQLPG 106 (134)
Q Consensus 28 P~~di~e~~-~~~~i~~~lPGv~~edI~V~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~~~~~g~F~r~i~LP~ 106 (134)
|++||++++ ++|+|.++|||++++||+|++ .++.|+|+|+++.... ...+++++|+. +|.|.|+|.||.
T Consensus 1 p~~di~e~~~~~~~v~~~lPG~~kedi~v~~---~~~~L~I~g~~~~~~~---~~~~~~~~e~~----~g~f~R~~~LP~ 70 (90)
T cd06470 1 PPYNIEKTGENNYRITLAVAGFSEDDLEIEV---ENNQLTVTGKKADEEN---EEREYLHRGIA----KRAFERSFNLAD 70 (90)
T ss_pred CCeeeEEcCCCeEEEEEECCCCCHHHeEEEE---ECCEEEEEEEEccccc---CCCcEEEEEEe----ceEEEEEEECCC
Confidence 789999975 999999999999999999988 9999999999986542 45678889998 899999999999
Q ss_pred CCccCceEEEeCCCCEEEEEEee
Q 043145 107 PVNPEQFSGNFGIDGILEGIVMK 129 (134)
Q Consensus 107 ~v~~~~i~A~~~~nGvL~I~lPK 129 (134)
+++.+ +|+| +||+|+|+||+
T Consensus 71 ~vd~~--~A~~-~~GvL~I~l~~ 90 (90)
T cd06470 71 HVKVK--GAEL-ENGLLTIDLER 90 (90)
T ss_pred CceEC--eeEE-eCCEEEEEEEC
Confidence 99875 9999 69999999985
No 7
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.92 E-value=1.3e-24 Score=143.57 Aligned_cols=82 Identities=16% Similarity=0.223 Sum_probs=72.2
Q ss_pred eEEEeCCEEEEEEEcCCCCCCCEEEEEEeCCCCEEEEEEEEEcccccccccccEEEEEeecCCCCeEEEEEEECCCCCcc
Q 043145 31 DIGECEDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQTQNLCPPGHFSISFQLPGPVNP 110 (134)
Q Consensus 31 di~e~~~~~~i~~~lPGv~~edI~V~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~~~~~g~F~r~i~LP~~v~~ 110 (134)
+|.+++++|.|.++||||+++||+|++ .++.|+|+|++.... +..++++ ..|.|+|+||.+||.
T Consensus 4 ~v~e~~~~~~v~~dlpG~~~edi~V~v---~~~~L~I~g~~~~~~----~~~~~~~---------~ef~R~~~LP~~Vd~ 67 (86)
T cd06497 4 EVRSDRDKFTIYLDVKHFSPEDLTVKV---LDDYVEIHGKHSERQ----DDHGYIS---------REFHRRYRLPSNVDQ 67 (86)
T ss_pred eEEEcCCEEEEEEECCCCCHHHeEEEE---ECCEEEEEEEEccee----CCCCEEE---------EEEEEEEECCCCCCh
Confidence 799999999999999999999999988 999999999875322 2344553 459999999999999
Q ss_pred CceEEEe-CCCCEEEEEEee
Q 043145 111 EQFSGNF-GIDGILEGIVMK 129 (134)
Q Consensus 111 ~~i~A~~-~~nGvL~I~lPK 129 (134)
++|+|+| + ||||+|++||
T Consensus 68 ~~i~A~~~~-dGvL~I~~PK 86 (86)
T cd06497 68 SAITCSLSA-DGMLTFSGPK 86 (86)
T ss_pred HHeEEEeCC-CCEEEEEecC
Confidence 9999999 5 9999999998
No 8
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.92 E-value=6.6e-24 Score=142.98 Aligned_cols=91 Identities=26% Similarity=0.505 Sum_probs=75.6
Q ss_pred eEEEeCCEEEEEEEcCCCCCCCEEEEEEeCCCCEEEEEEEEEcccccccccccEEEEEeecCCCCeEEEEEEECCCCCcc
Q 043145 31 DIGECEDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQTQNLCPPGHFSISFQLPGPVNP 110 (134)
Q Consensus 31 di~e~~~~~~i~~~lPGv~~edI~V~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~~~~~g~F~r~i~LP~~v~~ 110 (134)
||.+++++|.|.++|||+.++||+|++ .++.|.|+|++... .....++..|++ ++.|.|+|+||.++|.
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~---~~~~L~I~g~~~~~----~~~~~~~~~~~~----~~~f~r~~~lP~~vd~ 69 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKV---DDNKLVISGKRKEE----EEDDRYYRSERR----YGSFERSIRLPEDVDP 69 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEE---ETTEEEEEEEEEGE----ECTTCEEEE-S-----SEEEEEEEE-STTB-G
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEE---ecCccceeceeeee----eeeeeeeecccc----cceEEEEEcCCCcCCc
Confidence 799999999999999999999999988 99999999999821 335567777877 8999999999999999
Q ss_pred CceEEEeCCCCEEEEEEeecCCC
Q 043145 111 EQFSGNFGIDGILEGIVMKQKHT 133 (134)
Q Consensus 111 ~~i~A~~~~nGvL~I~lPK~~~~ 133 (134)
++|+|.| +||+|+|++||....
T Consensus 70 ~~i~a~~-~~GvL~I~~pk~~~~ 91 (102)
T PF00011_consen 70 DKIKASY-ENGVLTITIPKKEEE 91 (102)
T ss_dssp GG-EEEE-TTSEEEEEEEBSSSC
T ss_pred ceEEEEe-cCCEEEEEEEccccc
Confidence 9999999 699999999998764
No 9
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.91 E-value=3.8e-24 Score=140.73 Aligned_cols=82 Identities=12% Similarity=0.226 Sum_probs=71.3
Q ss_pred EEEeCCEEEEEEEcCCCCCCCEEEEEEeCCCCEEEEEEEEEcccccccccccEEEEEeecCCCCeEEEEEEECCCCCccC
Q 043145 32 IGECEDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQTQNLCPPGHFSISFQLPGPVNPE 111 (134)
Q Consensus 32 i~e~~~~~~i~~~lPGv~~edI~V~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~~~~~g~F~r~i~LP~~v~~~ 111 (134)
+.+++++|.|.++||||+|+||+|++ .++.|+|+|++.... +..+++ .+.|.|+|.||.+||.+
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edi~V~v---~~~~L~I~g~~~~~~----~~~~~~---------~~eF~R~~~LP~~vd~~ 65 (84)
T cd06498 2 MRLEKDKFSVNLDVKHFSPEELKVKV---LGDFIEIHGKHEERQ----DEHGFI---------SREFQRKYRIPADVDPL 65 (84)
T ss_pred eEeCCceEEEEEECCCCCHHHeEEEE---ECCEEEEEEEEccee----CCCCEE---------EEEEEEEEECCCCCChH
Confidence 67889999999999999999999988 999999999875332 234455 35799999999999999
Q ss_pred ceEEEeCC-CCEEEEEEeec
Q 043145 112 QFSGNFGI-DGILEGIVMKQ 130 (134)
Q Consensus 112 ~i~A~~~~-nGvL~I~lPK~ 130 (134)
+|+|+| . ||||+|++||+
T Consensus 66 ~i~A~~-~~dGvL~I~lPk~ 84 (84)
T cd06498 66 TITSSL-SPDGVLTVCGPRK 84 (84)
T ss_pred HcEEEe-CCCCEEEEEEeCC
Confidence 999999 4 99999999985
No 10
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.91 E-value=5.7e-24 Score=139.53 Aligned_cols=83 Identities=14% Similarity=0.227 Sum_probs=71.1
Q ss_pred eEEEeCCEEEEEEEcCCCCCCCEEEEEEeCCCCEEEEEEEEEcccccccccccEEEEEeecCCCCeEEEEEEECCCCCcc
Q 043145 31 DIGECEDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQTQNLCPPGHFSISFQLPGPVNP 110 (134)
Q Consensus 31 di~e~~~~~~i~~~lPGv~~edI~V~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~~~~~g~F~r~i~LP~~v~~ 110 (134)
+|.+++++|.|.++||||+++||+|++ .++.|+|+|++.... +..++++ ..|.|+|+||.+||.
T Consensus 1 ~~~~~~~~~~v~~dlpG~~~edI~V~v---~~~~L~I~g~~~~~~----~~~~~~~---------~ef~R~~~LP~~vd~ 64 (83)
T cd06478 1 EVRLDKDRFSVNLDVKHFSPEELSVKV---LGDFVEIHGKHEERQ----DEHGFIS---------REFHRRYRLPPGVDP 64 (83)
T ss_pred CeeecCceEEEEEECCCCCHHHeEEEE---ECCEEEEEEEEceEc----CCCCEEE---------EEEEEEEECCCCcCh
Confidence 478899999999999999999999988 999999999875322 2334543 459999999999999
Q ss_pred CceEEEeCCCCEEEEEEee
Q 043145 111 EQFSGNFGIDGILEGIVMK 129 (134)
Q Consensus 111 ~~i~A~~~~nGvL~I~lPK 129 (134)
++|+|+|.+||||+|++||
T Consensus 65 ~~i~A~~~~dGvL~I~~PK 83 (83)
T cd06478 65 AAITSSLSADGVLTISGPR 83 (83)
T ss_pred HHeEEEECCCCEEEEEecC
Confidence 9999999239999999998
No 11
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.91 E-value=8e-24 Score=138.33 Aligned_cols=79 Identities=19% Similarity=0.312 Sum_probs=70.8
Q ss_pred eEEEeCCEEEEEEEcCCCCCCCEEEEEEeCCCCEEEEEEEEEcccccccccccEEEEEeecCCCCeEEEEEEECCCCCcc
Q 043145 31 DIGECEDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQTQNLCPPGHFSISFQLPGPVNP 110 (134)
Q Consensus 31 di~e~~~~~~i~~~lPGv~~edI~V~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~~~~~g~F~r~i~LP~~v~~ 110 (134)
||.|++++|.|.++||||+|+||+|++ .++.|+|+|+++... .. . +|+|.|+|.||.+||+
T Consensus 2 ~v~e~~~~~~v~~dlpG~~pedi~V~v---~~~~L~I~ger~~~~------~~------~----~g~F~R~~~LP~~vd~ 62 (81)
T cd06479 2 NVKTLGDTYQFAVDVSDFSPEDIIVTT---SNNQIEVHAEKLASD------GT------V----MNTFTHKCQLPEDVDP 62 (81)
T ss_pred CccCcCCeEEEEEECCCCCHHHeEEEE---ECCEEEEEEEEeccC------CC------E----EEEEEEEEECCCCcCH
Confidence 789999999999999999999999988 999999999986322 11 2 6999999999999999
Q ss_pred CceEEEe-CCCCEEEEEEee
Q 043145 111 EQFSGNF-GIDGILEGIVMK 129 (134)
Q Consensus 111 ~~i~A~~-~~nGvL~I~lPK 129 (134)
++|+|+| + ||+|+|++++
T Consensus 63 e~v~A~l~~-~GvL~I~~~~ 81 (81)
T cd06479 63 TSVSSSLGE-DGTLTIKARR 81 (81)
T ss_pred HHeEEEecC-CCEEEEEecC
Confidence 9999996 5 9999999985
No 12
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.91 E-value=1.1e-23 Score=139.01 Aligned_cols=83 Identities=18% Similarity=0.266 Sum_probs=72.4
Q ss_pred eeeEEEeCCEEEEEEEcCCCCCCCEEEEEEeCCCCEEEEEEEEEcccccccccccEEEEEeecCCCCeEEEEEEECCCCC
Q 043145 29 LVDIGECEDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQTQNLCPPGHFSISFQLPGPV 108 (134)
Q Consensus 29 ~~di~e~~~~~~i~~~lPGv~~edI~V~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~~~~~g~F~r~i~LP~~v 108 (134)
..||+|++++|.|.++||||+|+||+|++ .++.|+|+|++.... ....+. .++|+|+|+||.+|
T Consensus 2 ~~~i~e~~~~~~v~~dlPG~~~edi~V~v---~~~~L~I~g~~~~~~----~~~~~~---------~~~f~R~f~LP~~v 65 (86)
T cd06475 2 MSEIRQTADRWKVSLDVNHFAPEELVVKT---KDGVVEITGKHEEKQ----DEHGFV---------SRCFTRKYTLPPGV 65 (86)
T ss_pred cceEEEcCCeEEEEEECCCCCHHHEEEEE---ECCEEEEEEEECcCc----CCCCEE---------EEEEEEEEECCCCC
Confidence 35899999999999999999999999988 999999999986422 123333 36899999999999
Q ss_pred ccCceEEEeCC-CCEEEEEEe
Q 043145 109 NPEQFSGNFGI-DGILEGIVM 128 (134)
Q Consensus 109 ~~~~i~A~~~~-nGvL~I~lP 128 (134)
|.++|+|.| . ||+|+|++|
T Consensus 66 d~~~v~A~~-~~dGvL~I~lP 85 (86)
T cd06475 66 DPTAVTSSL-SPDGILTVEAP 85 (86)
T ss_pred CHHHcEEEE-CCCCeEEEEec
Confidence 999999999 5 999999998
No 13
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.90 E-value=2e-23 Score=137.05 Aligned_cols=81 Identities=15% Similarity=0.160 Sum_probs=69.8
Q ss_pred EEEeCCEEEEEEEcCCCCCCCEEEEEEeCCCCEEEEEEEEEcccccccccccEEEEEeecCCCCeEEEEEEECCCCCccC
Q 043145 32 IGECEDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQTQNLCPPGHFSISFQLPGPVNPE 111 (134)
Q Consensus 32 i~e~~~~~~i~~~lPGv~~edI~V~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~~~~~g~F~r~i~LP~~v~~~ 111 (134)
+..++++|.|.++||||+|+||+|++ .++.|+|+|++.... +...++ .+.|.|+|.||.+||++
T Consensus 2 ~~~~~d~y~v~~dlpG~~~edi~V~v---~~~~L~I~g~~~~~~----~~~~~~---------~~eF~R~~~LP~~vd~~ 65 (83)
T cd06476 2 VESEDDKYQVFLDVCHFTPDEITVRT---VDNLLEVSARHPQRM----DRHGFV---------SREFTRTYILPMDVDPL 65 (83)
T ss_pred eeccCCeEEEEEEcCCCCHHHeEEEE---ECCEEEEEEEEccee----cCCCEE---------EEEEEEEEECCCCCChh
Confidence 34578999999999999999999988 999999999975322 233344 46799999999999999
Q ss_pred ceEEEeCC-CCEEEEEEee
Q 043145 112 QFSGNFGI-DGILEGIVMK 129 (134)
Q Consensus 112 ~i~A~~~~-nGvL~I~lPK 129 (134)
+|+|+| + ||+|+|++||
T Consensus 66 ~v~A~~-~~dGvL~I~~Pr 83 (83)
T cd06476 66 LVRASL-SHDGILCIQAPR 83 (83)
T ss_pred hEEEEe-cCCCEEEEEecC
Confidence 999999 5 9999999997
No 14
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.89 E-value=6.5e-23 Score=135.66 Aligned_cols=83 Identities=16% Similarity=0.240 Sum_probs=70.7
Q ss_pred EeCCEEEEEEEcCCCCCCCEEEEEEeCCCCEEEEEEEEEcccccccccccEEEEEeecCCCCeEEEEEEECCCCCccCce
Q 043145 34 ECEDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQTQNLCPPGHFSISFQLPGPVNPEQF 113 (134)
Q Consensus 34 e~~~~~~i~~~lPGv~~edI~V~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~~~~~g~F~r~i~LP~~v~~~~i 113 (134)
+..+.|.|.++||||+++||+|++ .++.|.|+|++..... .....+.+ . +|+|.|+|.||.+||.+.|
T Consensus 4 ~~~d~~~v~~dlpG~~~edI~V~v---~~~~L~I~g~~~~~~~--~~~~~~~~---~----~~~F~R~~~LP~~Vd~~~i 71 (87)
T cd06481 4 DGKEGFSLKLDVRGFSPEDLSVRV---DGRKLVVTGKREKKNE--DEKGSFSY---E----YQEFVREAQLPEHVDPEAV 71 (87)
T ss_pred CccceEEEEEECCCCChHHeEEEE---ECCEEEEEEEEeeecc--cCCCcEEE---E----eeEEEEEEECCCCcChHHe
Confidence 467899999999999999999988 9999999999865432 22333432 2 6999999999999999999
Q ss_pred EEEe-CCCCEEEEEEee
Q 043145 114 SGNF-GIDGILEGIVMK 129 (134)
Q Consensus 114 ~A~~-~~nGvL~I~lPK 129 (134)
+|.| + ||||+|++|+
T Consensus 72 ~A~~~~-dGvL~I~~P~ 87 (87)
T cd06481 72 TCSLSP-SGHLHIRAPR 87 (87)
T ss_pred EEEeCC-CceEEEEcCC
Confidence 9999 7 9999999995
No 15
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.89 E-value=1.4e-22 Score=134.11 Aligned_cols=81 Identities=14% Similarity=0.145 Sum_probs=68.8
Q ss_pred eCCEEEEEEEcCCCCCCCEEEEEEeCCCCEEEEEEEEEcccccccccccEEEEEeecCCCCeEEEEEEECCCCCccCceE
Q 043145 35 CEDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQTQNLCPPGHFSISFQLPGPVNPEQFS 114 (134)
Q Consensus 35 ~~~~~~i~~~lPGv~~edI~V~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~~~~~g~F~r~i~LP~~v~~~~i~ 114 (134)
++++|+|.++||||+|+||+|++ .++.|+|+|+++...+ ... ..||+ +|+|.|+|.||.+||.++|+
T Consensus 6 ~~~~~~v~adlPG~~kedI~V~v---~~~~L~I~ger~~~~e--~~~----~~er~----~g~F~R~f~LP~~Vd~d~i~ 72 (87)
T cd06482 6 DSSNVLASVDVCGFEPDQVKVKV---KDGKVQVSAERENRYD--CLG----SKKYS----YMNICKEFSLPPGVDEKDVT 72 (87)
T ss_pred cCCEEEEEEECCCCCHHHeEEEE---ECCEEEEEEEEecccc--cCC----ccEEE----EEEEEEEEECCCCcChHHcE
Confidence 57899999999999999999988 9999999999875432 111 22555 89999999999999999999
Q ss_pred EEeCCCCEEEEEEe
Q 043145 115 GNFGIDGILEGIVM 128 (134)
Q Consensus 115 A~~~~nGvL~I~lP 128 (134)
|+|+.+|+|+|.-|
T Consensus 73 A~~~~~~~l~i~~~ 86 (87)
T cd06482 73 YSYGLGSVVKIETP 86 (87)
T ss_pred EEEcCCCEEEEeeC
Confidence 99964449999877
No 16
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.88 E-value=4.7e-22 Score=129.43 Aligned_cols=88 Identities=28% Similarity=0.495 Sum_probs=77.9
Q ss_pred eEEEeCCEEEEEEEcCCCCCCCEEEEEEeCCCCEEEEEEEEEcccccccccccEEEEEeecCCCCeEEEEEEECCCCCcc
Q 043145 31 DIGECEDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQTQNLCPPGHFSISFQLPGPVNP 110 (134)
Q Consensus 31 di~e~~~~~~i~~~lPGv~~edI~V~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~~~~~g~F~r~i~LP~~v~~ 110 (134)
++.|++++|+|.++||||++++|+|++ .++.|.|+|++...... ...+...++. +|.|.|+|+||.+++.
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v---~~~~l~I~g~~~~~~~~---~~~~~~~~~~----~~~f~r~~~LP~~vd~ 70 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVEV---EDGVLTISGEREEEEEE---EENYLRRERS----YGSFSRSFRLPEDVDP 70 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEEE---ECCEEEEEEEEeccccc---CCcEEEEEEe----CcEEEEEEECCCCcCH
Confidence 578999999999999999999999988 99999999999865431 2256666666 8999999999999999
Q ss_pred CceEEEeCCCCEEEEEEee
Q 043145 111 EQFSGNFGIDGILEGIVMK 129 (134)
Q Consensus 111 ~~i~A~~~~nGvL~I~lPK 129 (134)
+.++|.| .||+|+|++||
T Consensus 71 ~~i~a~~-~~G~L~I~~pk 88 (88)
T cd06464 71 DKIKASL-ENGVLTITLPK 88 (88)
T ss_pred HHcEEEE-eCCEEEEEEcC
Confidence 9999999 59999999997
No 17
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.88 E-value=3.9e-22 Score=130.90 Aligned_cols=80 Identities=21% Similarity=0.224 Sum_probs=68.2
Q ss_pred EEeCCEEEEEEEcCCCCCCCEEEEEEeCCCCEEEEEEEEEcccccccccccEEEEEeecCCCCeEEEEEEECCCCCccCc
Q 043145 33 GECEDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQTQNLCPPGHFSISFQLPGPVNPEQ 112 (134)
Q Consensus 33 ~e~~~~~~i~~~lPGv~~edI~V~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~~~~~g~F~r~i~LP~~v~~~~ 112 (134)
.|++++|.|.++||||+|+||+|++ .++.|+|+|++..... ..++. .++|.|+|+||.+|+.++
T Consensus 3 ~e~~~~~~v~~dlpG~~~edI~V~v---~~~~L~I~ge~~~~~~----~~~~~---------~r~F~R~~~LP~~Vd~~~ 66 (83)
T cd06477 3 EEGKPMFQILLDVVQFRPEDIIIQV---FEGWLLIKGQHGVRMD----EHGFI---------SRSFTRQYQLPDGVEHKD 66 (83)
T ss_pred ccCCceEEEEEEcCCCCHHHeEEEE---ECCEEEEEEEEccccC----CCCEE---------EEEEEEEEECCCCcchhe
Confidence 4789999999999999999999988 9999999999875321 23333 358999999999999999
Q ss_pred eEEEeCCCCEEEEEEe
Q 043145 113 FSGNFGIDGILEGIVM 128 (134)
Q Consensus 113 i~A~~~~nGvL~I~lP 128 (134)
|+|+|.+||||+|+.|
T Consensus 67 v~A~~~~dGvL~I~~~ 82 (83)
T cd06477 67 LSAMLCHDGILVVETK 82 (83)
T ss_pred EEEEEcCCCEEEEEec
Confidence 9999713999999976
No 18
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.87 E-value=9.2e-22 Score=128.71 Aligned_cols=78 Identities=18% Similarity=0.347 Sum_probs=67.1
Q ss_pred eCCEEEEEEEcCCCCCCCEEEEEEeCCCCEEEEEEEEEcccccccccccEEEEEeecCCCCeEEEEEEECCCCCccCceE
Q 043145 35 CEDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQTQNLCPPGHFSISFQLPGPVNPEQFS 114 (134)
Q Consensus 35 ~~~~~~i~~~lPGv~~edI~V~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~~~~~g~F~r~i~LP~~v~~~~i~ 114 (134)
.+++|.|.++||||+++||+|++ .++.|.|+|+++.... ...+. +|.|.|+|+||.+||.++++
T Consensus 5 ~~~~~~v~~dlpG~~~edI~v~v---~~~~L~I~g~~~~~~~----~~~~~---------~~~f~r~~~LP~~vd~~~i~ 68 (83)
T cd06526 5 DDEKFQVTLDVKGFKPEELKVKV---SDNKLVVEGKHEERED----EHGYV---------SREFTRRYQLPEGVDPDSVT 68 (83)
T ss_pred cCeeEEEEEECCCCCHHHcEEEE---ECCEEEEEEEEeeecc----CCCEE---------EEEEEEEEECCCCCChHHeE
Confidence 34699999999999999999988 9999999999875321 12222 58899999999999999999
Q ss_pred EEeCCC-CEEEEEEee
Q 043145 115 GNFGID-GILEGIVMK 129 (134)
Q Consensus 115 A~~~~n-GvL~I~lPK 129 (134)
|+| .| |+|+|++||
T Consensus 69 A~~-~~~GvL~I~~Pk 83 (83)
T cd06526 69 SSL-SSDGVLTIEAPK 83 (83)
T ss_pred EEe-CCCcEEEEEecC
Confidence 999 47 999999997
No 19
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.81 E-value=1.3e-19 Score=120.68 Aligned_cols=83 Identities=17% Similarity=0.220 Sum_probs=71.3
Q ss_pred eEEEeCCEEEEEEEcCCCCCCCEEEEEEeCCCCEEEEEEEEEcccccccccccEEEEEeecCCCCeEEEEEEECCCCCcc
Q 043145 31 DIGECEDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQTQNLCPPGHFSISFQLPGPVNP 110 (134)
Q Consensus 31 di~e~~~~~~i~~~lPGv~~edI~V~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~~~~~g~F~r~i~LP~~v~~ 110 (134)
-+..+++.|.|.+++.||+++||+|++ .++.|+|+|++..... ..++. .++|.|+|.||.+||.
T Consensus 9 ~~~~~~~~f~v~ldv~gF~pEDL~Vkv---~~~~L~V~Gkh~~~~~----e~g~~---------~r~F~R~~~LP~~Vd~ 72 (91)
T cd06480 9 PPPNSSEPWKVCVNVHSFKPEELTVKT---KDGFVEVSGKHEEQQK----EGGIV---------SKNFTKKIQLPPEVDP 72 (91)
T ss_pred CCCCCCCcEEEEEEeCCCCHHHcEEEE---ECCEEEEEEEECcccC----CCCEE---------EEEEEEEEECCCCCCc
Confidence 355689999999999999999999988 9999999999875432 22344 4689999999999999
Q ss_pred CceEEEeCCCCEEEEEEee
Q 043145 111 EQFSGNFGIDGILEGIVMK 129 (134)
Q Consensus 111 ~~i~A~~~~nGvL~I~lPK 129 (134)
+.|+|.|.+||+|+|.+|.
T Consensus 73 ~~v~s~l~~dGvL~IeaP~ 91 (91)
T cd06480 73 VTVFASLSPEGLLIIEAPQ 91 (91)
T ss_pred hhEEEEeCCCCeEEEEcCC
Confidence 9999999559999999983
No 20
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.1e-18 Score=131.03 Aligned_cols=102 Identities=23% Similarity=0.319 Sum_probs=89.4
Q ss_pred CCCceeeeeEEEeCCEEEEEEEcCCCCCCCEEEEEEeCCCC-EEEEEEEEEcccccccccccEEEEEeecCCCCeEEEEE
Q 043145 23 VGPVVGLVDIGECEDSYMFRVALPGVKRDDGDFSCEVDPMG-KVLIKGVTTTGEKSVYKYSQVFEMQTQNLCPPGHFSIS 101 (134)
Q Consensus 23 ~~~~~P~~di~e~~~~~~i~~~lPGv~~edI~V~v~~~~~~-~L~I~g~~~~~~~~~~~~~~~~~~e~~~~~~~g~F~r~ 101 (134)
...+.++.+|.+.++.|.+.++|||+.+++++|.+ .++ +|.|+|+++...+.......++..|+. .|.|.|.
T Consensus 80 ~~~~~~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~---~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~----~g~F~r~ 152 (196)
T KOG0710|consen 80 KSEARVPWDVKESPDAHEFKVDLPGLKKEDIKVEV---EDEKVLTISGERKKEEEESGSGKKWKRVERK----LGKFKRR 152 (196)
T ss_pred cccccCCcccccCCCceEEEeeCCCCCchhceEEe---ccCcEEEEecccccccccccCCccceeehhc----ccceEee
Confidence 45666788999999999999999999999999976 666 799999998766533355667788888 8999999
Q ss_pred EECCCCCccCceEEEeCCCCEEEEEEeecCC
Q 043145 102 FQLPGPVNPEQFSGNFGIDGILEGIVMKQKH 132 (134)
Q Consensus 102 i~LP~~v~~~~i~A~~~~nGvL~I~lPK~~~ 132 (134)
|.||++++.++|+|.| +||||+|++||..+
T Consensus 153 ~~lPenv~~d~ikA~~-~nGVL~VvvpK~~~ 182 (196)
T KOG0710|consen 153 FELPENVDVDEIKAEM-ENGVLTVVVPKLEP 182 (196)
T ss_pred ecCCccccHHHHHHHh-hCCeEEEEEecccc
Confidence 9999999999999999 69999999999876
No 21
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1e-15 Score=112.84 Aligned_cols=89 Identities=17% Similarity=0.247 Sum_probs=78.7
Q ss_pred eeeeEEEeCCEEEEEEEcCCCCCCCEEEEEEeCCCCEEEEEEEEEcccccccccccEEEEEeecCCCCeEEEEEEECCCC
Q 043145 28 GLVDIGECEDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQTQNLCPPGHFSISFQLPGP 107 (134)
Q Consensus 28 P~~di~e~~~~~~i~~~lPGv~~edI~V~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~~~~~g~F~r~i~LP~~ 107 (134)
...++..+.+.|.|.+|+..|.|++|.|++ .++.|.|.|++.... +..++. .++|.|.|.||.+
T Consensus 63 ~~~~~~~~~~~F~V~lDV~~F~PeEl~Vk~---~~~~l~V~gkHeer~----d~~G~v---------~R~F~R~y~LP~~ 126 (173)
T KOG3591|consen 63 GASEIVNDKDKFEVNLDVHQFKPEELKVKT---DDNTLEVEGKHEEKE----DEHGYV---------SRSFVRKYLLPED 126 (173)
T ss_pred cccccccCCCcEEEEEEcccCcccceEEEe---CCCEEEEEeeecccc----CCCCeE---------EEEEEEEecCCCC
Confidence 467788999999999999999999999998 999999999987543 344554 3679999999999
Q ss_pred CccCceEEEeCCCCEEEEEEeecCC
Q 043145 108 VNPEQFSGNFGIDGILEGIVMKQKH 132 (134)
Q Consensus 108 v~~~~i~A~~~~nGvL~I~lPK~~~ 132 (134)
||++.|++.|..||+|+|+.||...
T Consensus 127 vdp~~V~S~LS~dGvLtI~ap~~~~ 151 (173)
T KOG3591|consen 127 VDPTSVTSTLSSDGVLTIEAPKPPP 151 (173)
T ss_pred CChhheEEeeCCCceEEEEccCCCC
Confidence 9999999999999999999999764
No 22
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.61 E-value=5.3e-15 Score=92.81 Aligned_cols=80 Identities=30% Similarity=0.455 Sum_probs=69.3
Q ss_pred EEEeCCEEEEEEEcCCCCCCCEEEEEEeCCCCEEEEEEEEEcccccccccccEEEEEeecCCCCeEEEEEEECCCCCccC
Q 043145 32 IGECEDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQTQNLCPPGHFSISFQLPGPVNPE 111 (134)
Q Consensus 32 i~e~~~~~~i~~~lPGv~~edI~V~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~~~~~g~F~r~i~LP~~v~~~ 111 (134)
++++++.|.|.+++||+.+++++|.+ .++.|.|+|.+..... .+.. .+.|.+.+.||..++++
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~---~~~~l~v~~~~~~~~~----------~~~~----~~~~~~~~~L~~~i~~~ 63 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEV---EDNVLTISGKREEEEE----------RERS----YGEFERSFELPEDVDPE 63 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEE---ECCEEEEEEEEcCCCc----------ceEe----eeeEEEEEECCCCcCHH
Confidence 36788999999999999999999988 9999999998764321 1122 68899999999999999
Q ss_pred ceEEEeCCCCEEEEEEee
Q 043145 112 QFSGNFGIDGILEGIVMK 129 (134)
Q Consensus 112 ~i~A~~~~nGvL~I~lPK 129 (134)
.++|.| .+|+|+|.+||
T Consensus 64 ~~~~~~-~~~~l~i~l~K 80 (80)
T cd00298 64 KSKASL-ENGVLEITLPK 80 (80)
T ss_pred HCEEEE-ECCEEEEEEcC
Confidence 999999 59999999997
No 23
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.43 E-value=1.5e-12 Score=83.33 Aligned_cols=71 Identities=20% Similarity=0.314 Sum_probs=63.2
Q ss_pred EEEeCCEEEEEEEcCCCCCCCEEEEEEeCCCCEEEEEEEEEcccccccccccEEEEEeecCCCCeEEEEEEECCCCCccC
Q 043145 32 IGECEDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQTQNLCPPGHFSISFQLPGPVNPE 111 (134)
Q Consensus 32 i~e~~~~~~i~~~lPGv~~edI~V~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~~~~~g~F~r~i~LP~~v~~~ 111 (134)
++++++.+.|.+++||+++++++|++ +++.|.|+| . .|.+.+.||..|+++
T Consensus 1 W~Qt~~~v~i~i~~p~v~~~~v~v~~---~~~~l~i~~------~--------------------~~~~~~~l~~~I~~e 51 (78)
T cd06469 1 WSQTDEDVKISVPLKGVKTSKVDIFC---SDLYLKVNF------P--------------------PYLFELDLAAPIDDE 51 (78)
T ss_pred CcccCCEEEEEEEeCCCccccceEEE---ecCEEEEcC------C--------------------CEEEEEeCccccccc
Confidence 36789999999999999999999988 889999875 0 266789999999999
Q ss_pred ceEEEeCCCCEEEEEEeecCC
Q 043145 112 QFSGNFGIDGILEGIVMKQKH 132 (134)
Q Consensus 112 ~i~A~~~~nGvL~I~lPK~~~ 132 (134)
+.+|++ .+|.|+|+|||.++
T Consensus 52 ~~~~~~-~~~~l~i~L~K~~~ 71 (78)
T cd06469 52 KSSAKI-GNGVLVFTLVKKEP 71 (78)
T ss_pred ccEEEE-eCCEEEEEEEeCCC
Confidence 999999 59999999999875
No 24
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=99.24 E-value=1.9e-10 Score=84.70 Aligned_cols=82 Identities=29% Similarity=0.400 Sum_probs=63.2
Q ss_pred CCceeeeeEEEeCC-EEEEEEEcCCCCCCC-EEEEEEeCCCCEEEEEEEEEcccccccccccEEEEEeecCCCCeEEEEE
Q 043145 24 GPVVGLVDIGECED-SYMFRVALPGVKRDD-GDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQTQNLCPPGHFSIS 101 (134)
Q Consensus 24 ~~~~P~~di~e~~~-~~~i~~~lPGv~~ed-I~V~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~~~~~g~F~r~ 101 (134)
....+.+++.+.++ .++|.++||||++++ |+|.++- ..+.|+|+. .+.|.+.
T Consensus 88 ~~~~~~vdtre~dDge~~VvAdLPGVs~dd~idV~l~~-d~~~L~i~~-------------------------~~~~~kr 141 (177)
T PF05455_consen 88 DEESIHVDTRERDDGELVVVADLPGVSDDDAIDVTLDD-DEGALTIRV-------------------------GEKYLKR 141 (177)
T ss_pred CcceeeeeeEecCCCcEEEEEeCCCCCcccceeeEeec-CCceEEEec-------------------------CCceEee
Confidence 34467899999877 699999999999988 9997722 245565541 1335567
Q ss_pred EECCCCCccCceEEEeCCCCEEEEEEeecCCC
Q 043145 102 FQLPGPVNPEQFSGNFGIDGILEGIVMKQKHT 133 (134)
Q Consensus 102 i~LP~~v~~~~i~A~~~~nGvL~I~lPK~~~~ 133 (134)
+.||.. +++.++|+|+ ||||+|.+-+.++.
T Consensus 142 v~L~~~-~~e~~~~t~n-NgILEIri~~~~~~ 171 (177)
T PF05455_consen 142 VALPWP-DPEITSATFN-NGILEIRIRRTEES 171 (177)
T ss_pred EecCCC-ccceeeEEEe-CceEEEEEeecCCC
Confidence 999977 5788899995 99999999988764
No 25
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=99.19 E-value=2.5e-10 Score=72.87 Aligned_cols=75 Identities=16% Similarity=0.169 Sum_probs=65.7
Q ss_pred EEeCCEEEEEEEcCCCCCCCEEEEEEeCCCCEEEEEEEEEcccccccccccEEEEEeecCCCCeEEEEEEECCCCCccCc
Q 043145 33 GECEDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQTQNLCPPGHFSISFQLPGPVNPEQ 112 (134)
Q Consensus 33 ~e~~~~~~i~~~lPGv~~edI~V~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~~~~~g~F~r~i~LP~~v~~~~ 112 (134)
+++++.+.|.+.+||+.+++++|.+ .++.|.|++... . .+.|...+.|+..|+++.
T Consensus 2 ~Q~~~~v~i~v~~~~~~~~~~~v~~---~~~~l~i~~~~~---~------------------~~~~~~~~~L~~~I~~~~ 57 (84)
T cd06463 2 YQTLDEVTITIPLKDVTKKDVKVEF---TPKSLTVSVKGG---G------------------GKEYLLEGELFGPIDPEE 57 (84)
T ss_pred cccccEEEEEEEcCCCCccceEEEE---ecCEEEEEeeCC---C------------------CCceEEeeEccCccchhh
Confidence 5789999999999999999999988 899999997632 0 245778899999999999
Q ss_pred eEEEeCCCCEEEEEEeecCC
Q 043145 113 FSGNFGIDGILEGIVMKQKH 132 (134)
Q Consensus 113 i~A~~~~nGvL~I~lPK~~~ 132 (134)
.++++ .+|.|+|+|+|+.+
T Consensus 58 s~~~~-~~~~l~i~L~K~~~ 76 (84)
T cd06463 58 SKWTV-EDRKIEITLKKKEP 76 (84)
T ss_pred cEEEE-eCCEEEEEEEECCC
Confidence 99999 59999999999875
No 26
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=98.98 E-value=3.2e-09 Score=68.54 Aligned_cols=77 Identities=16% Similarity=0.220 Sum_probs=66.6
Q ss_pred eEEEeCCEEEEEEEcCCCCCCCEEEEEEeCCCCEEEEEEEEEcccccccccccEEEEEeecCCCCeEEEEEEECCCCCcc
Q 043145 31 DIGECEDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQTQNLCPPGHFSISFQLPGPVNP 110 (134)
Q Consensus 31 di~e~~~~~~i~~~lPGv~~edI~V~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~~~~~g~F~r~i~LP~~v~~ 110 (134)
|++++++.+.|.+.+||+.++++.|.+ .++.|.|++... . .+.|...+.|+..|++
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~---~~~~l~i~~~~~---~------------------~~~~~~~~~L~~~I~~ 56 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEF---NEQSLSVSIILP---G------------------GSEYQLELDLFGPIDP 56 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEE---ecCEEEEEEECC---C------------------CCeEEEecccccccCc
Confidence 578999999999999999999999988 889999986521 0 2357778899999999
Q ss_pred CceEEEeCCCCEEEEEEeecCC
Q 043145 111 EQFSGNFGIDGILEGIVMKQKH 132 (134)
Q Consensus 111 ~~i~A~~~~nGvL~I~lPK~~~ 132 (134)
+..++.+ .+|.|+|+|.|..+
T Consensus 57 ~~s~~~~-~~~~vei~L~K~~~ 77 (84)
T cd06466 57 EQSKVSV-LPTKVEITLKKAEP 77 (84)
T ss_pred hhcEEEE-eCeEEEEEEEcCCC
Confidence 9999999 69999999999875
No 27
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=98.67 E-value=6e-07 Score=56.60 Aligned_cols=77 Identities=14% Similarity=0.182 Sum_probs=62.6
Q ss_pred eeeeEEEeCCEEEEEEEcCCCC--CCCEEEEEEeCCCCEEEEEEEEEcccccccccccEEEEEeecCCCCeEEEEEEECC
Q 043145 28 GLVDIGECEDSYMFRVALPGVK--RDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQTQNLCPPGHFSISFQLP 105 (134)
Q Consensus 28 P~~di~e~~~~~~i~~~lPGv~--~edI~V~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~~~~~g~F~r~i~LP 105 (134)
|.++++++++.+.|.+.+++.. ++|++|.+ .++.|.|+...... ..|...+.|.
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~---~~~~l~v~~~~~~~---------------------~~~~~~~~L~ 56 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDF---TDTSLSVSIKSGDG---------------------KEYLLEGELF 56 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEE---ETTEEEEEEEETTS---------------------CEEEEEEEBS
T ss_pred CCeEEEECCCEEEEEEEEcCCCCChHHeEEEE---EeeEEEEEEEccCC---------------------ceEEEEEEEe
Confidence 6799999999999999996664 99999988 99999999542211 1355667899
Q ss_pred CCCccCceEEEeCCCCEEEEEEee
Q 043145 106 GPVNPEQFSGNFGIDGILEGIVMK 129 (134)
Q Consensus 106 ~~v~~~~i~A~~~~nGvL~I~lPK 129 (134)
..|+++..+..+ .++-|.|+|.|
T Consensus 57 ~~I~~~~s~~~~-~~~~i~i~L~K 79 (79)
T PF04969_consen 57 GEIDPDESTWKV-KDNKIEITLKK 79 (79)
T ss_dssp S-BECCCEEEEE-ETTEEEEEEEB
T ss_pred eeEcchhcEEEE-ECCEEEEEEEC
Confidence 999999999999 59999999987
No 28
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=98.50 E-value=2.8e-06 Score=57.74 Aligned_cols=78 Identities=13% Similarity=0.144 Sum_probs=65.8
Q ss_pred eeeeEEEeCCEEEEEEEcCCCCCCCEEEEEEeCCCCEEEEEEEEEcccccccccccEEEEEeecCCCCeEEEEEEECCCC
Q 043145 28 GLVDIGECEDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQTQNLCPPGHFSISFQLPGP 107 (134)
Q Consensus 28 P~~di~e~~~~~~i~~~lPGv~~edI~V~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~~~~~g~F~r~i~LP~~ 107 (134)
|+++++++.+.+.|.+.+||+ +++.|.+ ..+.|.|++.... . ...|...+.|...
T Consensus 1 p~~~W~Qt~~~V~i~i~~~~~--~~~~V~~---~~~~l~v~~~~~~-------~-------------~~~y~~~~~L~~~ 55 (108)
T cd06465 1 PPVLWAQRSDVVYLTIELPDA--KDPKIKL---EPTSLSFKAKGGG-------G-------------GKKYEFDLEFYKE 55 (108)
T ss_pred CceeeeECCCEEEEEEEeCCC--CCcEEEE---ECCEEEEEEEcCC-------C-------------CeeEEEEeEhhhh
Confidence 689999999999999999998 8899987 9999999975321 0 1225567789999
Q ss_pred CccCceEEEeCCCCEEEEEEeecC
Q 043145 108 VNPEQFSGNFGIDGILEGIVMKQK 131 (134)
Q Consensus 108 v~~~~i~A~~~~nGvL~I~lPK~~ 131 (134)
|+++..+.++ .++.|.|+|.|.+
T Consensus 56 I~pe~s~~~v-~~~kveI~L~K~~ 78 (108)
T cd06465 56 IDPEESKYKV-TGRQIEFVLRKKE 78 (108)
T ss_pred ccccccEEEe-cCCeEEEEEEECC
Confidence 9999999999 5999999999987
No 29
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=98.32 E-value=7.6e-06 Score=65.00 Aligned_cols=65 Identities=18% Similarity=0.357 Sum_probs=55.4
Q ss_pred CCEEEEEEEcCCC-CCCCEEEEEEeCCCCEEEEEEEEEcccccccccccEEEEEeecCCCCeEEEEEEECCCCCccCceE
Q 043145 36 EDSYMFRVALPGV-KRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQTQNLCPPGHFSISFQLPGPVNPEQFS 114 (134)
Q Consensus 36 ~~~~~i~~~lPGv-~~edI~V~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~~~~~g~F~r~i~LP~~v~~~~i~ 114 (134)
.+.++|+++|||+ +..+|++.| .+..|.|.... ..|.-.+.||..|+.+..+
T Consensus 260 p~~lvv~i~LP~~~s~~~i~LdV---~~~~l~l~~~~------------------------~~y~L~l~LP~~V~~~~~~ 312 (328)
T PF08190_consen 260 PEELVVEIELPGVESASDIDLDV---SEDRLSLSSPK------------------------PKYRLDLPLPYPVDEDNGK 312 (328)
T ss_pred CceEEEEEECCCcCccceeEEEE---eCCEEEEEeCC------------------------CceEEEccCCCcccCCCce
Confidence 5789999999999 779999977 99999998431 1355679999999999999
Q ss_pred EEeCCC--CEEEEEEe
Q 043145 115 GNFGID--GILEGIVM 128 (134)
Q Consensus 115 A~~~~n--GvL~I~lP 128 (134)
|.| +. ++|+|+||
T Consensus 313 Akf-~~~~~~L~vtlp 327 (328)
T PF08190_consen 313 AKF-DKKTKTLTVTLP 327 (328)
T ss_pred EEE-ccCCCEEEEEEE
Confidence 998 45 79999998
No 30
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=98.26 E-value=9.4e-06 Score=52.58 Aligned_cols=77 Identities=18% Similarity=0.183 Sum_probs=63.7
Q ss_pred eEEEeCCEEEEEEEcCCCCCCCEEEEEEeCCCCEEEEEEEEEcccccccccccEEEEEeecCCCCeEEEEEEECCCCCcc
Q 043145 31 DIGECEDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQTQNLCPPGHFSISFQLPGPVNP 110 (134)
Q Consensus 31 di~e~~~~~~i~~~lPGv~~edI~V~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~~~~~g~F~r~i~LP~~v~~ 110 (134)
|++++++...|.+.++|+.++++.|++ .++.|.+++.... ...|.-.+.|...|++
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~---~~~~l~~~~~~~~---------------------~~~y~~~~~L~~~I~p 56 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEF---EKRELSATVKLPS---------------------GNDYSLKLHLLHPIVP 56 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEE---eCCEEEEEEECCC---------------------CCcEEEeeecCceecc
Confidence 578899999999999999999999988 9999999875320 0125556789999999
Q ss_pred CceEEEeCCCCEEEEEEeecCC
Q 043145 111 EQFSGNFGIDGILEGIVMKQKH 132 (134)
Q Consensus 111 ~~i~A~~~~nGvL~I~lPK~~~ 132 (134)
++.+.+.. .+-+.|+|.|.+.
T Consensus 57 ~~s~~~v~-~~kiei~L~K~~~ 77 (84)
T cd06489 57 EQSSYKIL-STKIEIKLKKTEA 77 (84)
T ss_pred hhcEEEEe-CcEEEEEEEcCCC
Confidence 98888984 8889999999864
No 31
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=98.17 E-value=2.7e-05 Score=50.19 Aligned_cols=75 Identities=16% Similarity=0.135 Sum_probs=59.7
Q ss_pred eeEEEeCCEEEEEEEcC-CCCCCCEEEEEEeCCCCEEEEEEEEEcccccccccccEEEEEeecCCCCeEEEEEEECCCCC
Q 043145 30 VDIGECEDSYMFRVALP-GVKRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQTQNLCPPGHFSISFQLPGPV 108 (134)
Q Consensus 30 ~di~e~~~~~~i~~~lP-Gv~~edI~V~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~~~~~g~F~r~i~LP~~v 108 (134)
++++++++...|.+.+| |+.++|++|++ .++.|.|+... .. ++ -.-.|...|
T Consensus 1 y~W~Qt~~~V~i~i~~~~~~~~~dv~v~~---~~~~l~v~~~~---------~~-~~--------------l~~~L~~~I 53 (85)
T cd06467 1 YSWTQTLDEVTVTIPLPEGTKSKDVKVEI---TPKHLKVGVKG---------GE-PL--------------LDGELYAKV 53 (85)
T ss_pred CEEEeeCCEEEEEEECCCCCcceeEEEEE---EcCEEEEEECC---------CC-ce--------------EcCcccCce
Confidence 46789999999999997 78999999988 88999998531 11 11 123477899
Q ss_pred ccCceEEEeCCC-CEEEEEEeecCC
Q 043145 109 NPEQFSGNFGID-GILEGIVMKQKH 132 (134)
Q Consensus 109 ~~~~i~A~~~~n-GvL~I~lPK~~~ 132 (134)
+++...-.+ .+ ..|.|+|+|+++
T Consensus 54 ~~~~s~w~~-~~~~~v~i~L~K~~~ 77 (85)
T cd06467 54 KVDESTWTL-EDGKLLEITLEKRNE 77 (85)
T ss_pred eEcCCEEEE-eCCCEEEEEEEECCC
Confidence 999888899 58 899999999875
No 32
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=98.13 E-value=7.2e-05 Score=48.98 Aligned_cols=79 Identities=15% Similarity=0.077 Sum_probs=65.1
Q ss_pred eeeEEEeCCEEEEEEEcCCCCCCCEEEEEEeCCCCEEEEEEEEEcccccccccccEEEEEeecCCCCeEEEEEEECCCCC
Q 043145 29 LVDIGECEDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQTQNLCPPGHFSISFQLPGPV 108 (134)
Q Consensus 29 ~~di~e~~~~~~i~~~lPGv~~edI~V~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~~~~~g~F~r~i~LP~~v 108 (134)
.+|++++++...|.+.+.|+.++++.|.+ +++.|.++..... . -.|...+.|-..|
T Consensus 2 R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~---~~~~l~v~~~~~~--------~-------------~~y~~~l~L~~~I 57 (87)
T cd06488 2 RHDWHQTGSHVVVSVYAKNSNPELSVVEA---NSTVLTIHIVFEG--------N-------------KEFQLDIELWGVI 57 (87)
T ss_pred CccEeeCCCEEEEEEEECcCCccceEEEe---cCCEEEEEEECCC--------C-------------ceEEEEeeccceE
Confidence 47899999999999999999999999987 8888888754221 0 1366677899999
Q ss_pred ccCceEEEeCCCCEEEEEEeecCC
Q 043145 109 NPEQFSGNFGIDGILEGIVMKQKH 132 (134)
Q Consensus 109 ~~~~i~A~~~~nGvL~I~lPK~~~ 132 (134)
+++..+-.. ..+-+.|+|.|.++
T Consensus 58 ~~~~s~~~v-~~~kvei~L~K~~~ 80 (87)
T cd06488 58 DVEKSSVNM-LPTKVEIKLRKAEP 80 (87)
T ss_pred ChhHcEEEe-cCcEEEEEEEeCCC
Confidence 999988888 58899999999875
No 33
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=98.11 E-value=6.9e-05 Score=49.15 Aligned_cols=79 Identities=13% Similarity=0.122 Sum_probs=63.5
Q ss_pred eeeEEEeCCEEEEEEEcCCCCC---CCEEEEEEeCCCCEEEEEEEEEcccccccccccEEEEEeecCCCCeEEEEEE-EC
Q 043145 29 LVDIGECEDSYMFRVALPGVKR---DDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQTQNLCPPGHFSISF-QL 104 (134)
Q Consensus 29 ~~di~e~~~~~~i~~~lPGv~~---edI~V~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~~~~~g~F~r~i-~L 104 (134)
.++++++++...|.+.+|+..+ +|++|++ ..+.|.|++... . . ..|.-.+ +|
T Consensus 3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~---~~~~l~v~~~~~--~-----~--------------~~~~~~~~~L 58 (92)
T cd06468 3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVEF---TERSFELKVHDL--N-----G--------------KNYRFTINRL 58 (92)
T ss_pred eeeeecCCCEEEEEEEccCCCcCCcccEEEEe---cCCEEEEEEECC--C-----C--------------cEEEEEehHh
Confidence 5789999999999999999987 9999988 999999987421 0 1 1233344 38
Q ss_pred CCCCccCceEEEeCCCCEEEEEEeecCC
Q 043145 105 PGPVNPEQFSGNFGIDGILEGIVMKQKH 132 (134)
Q Consensus 105 P~~v~~~~i~A~~~~nGvL~I~lPK~~~ 132 (134)
-..|++++.+... ..+-+.|+|.|.++
T Consensus 59 ~~~I~~e~s~~~~-~~~ki~i~L~K~~~ 85 (92)
T cd06468 59 LKKIDPEKSSFKV-KTDRIVITLAKKKE 85 (92)
T ss_pred hCccCccccEEEE-eCCEEEEEEEeCCC
Confidence 8999999999999 48889999999875
No 34
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=98.09 E-value=6.2e-05 Score=49.01 Aligned_cols=75 Identities=13% Similarity=0.154 Sum_probs=58.7
Q ss_pred eeEEEeCCEEEEEEEcC-CCCCCCEEEEEEeCCCCEEEEEEEEEcccccccccccEEEEEeecCCCCeEEEEEEECCCCC
Q 043145 30 VDIGECEDSYMFRVALP-GVKRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQTQNLCPPGHFSISFQLPGPV 108 (134)
Q Consensus 30 ~di~e~~~~~~i~~~lP-Gv~~edI~V~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~~~~~g~F~r~i~LP~~v 108 (134)
|+++++.+...|.+.+| |+.++|++|++ ..+.|.+... .. ..++ .-.|...|
T Consensus 1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~---~~~~l~v~~~---~~------~~~~---------------~g~L~~~I 53 (85)
T cd06493 1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKF---LPDHISIALK---DQ------APLL---------------EGKLYSSI 53 (85)
T ss_pred CccEEeCCEEEEEEECCCCCChhhEEEEE---ecCEEEEEeC---CC------CeEE---------------eCcccCcc
Confidence 46889999999999996 99999999988 8899988641 00 1111 23677899
Q ss_pred ccCceEEEeCCCC-EEEEEEeecCC
Q 043145 109 NPEQFSGNFGIDG-ILEGIVMKQKH 132 (134)
Q Consensus 109 ~~~~i~A~~~~nG-vL~I~lPK~~~ 132 (134)
+++.-+=++ ++| .|.|+|.|+++
T Consensus 54 ~~d~Stw~i-~~~~~l~i~L~K~~~ 77 (85)
T cd06493 54 DHESSTWII-KENKSLEVSLIKKDE 77 (85)
T ss_pred cccCcEEEE-eCCCEEEEEEEECCC
Confidence 999887777 477 79999999875
No 35
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=97.81 E-value=0.00035 Score=46.60 Aligned_cols=77 Identities=14% Similarity=0.157 Sum_probs=60.8
Q ss_pred eeeeeEEEeCCEEEEEEEcC-CCCCCCEEEEEEeCCCCEEEEEEEEEcccccccccccEEEEEeecCCCCeEEEEEEECC
Q 043145 27 VGLVDIGECEDSYMFRVALP-GVKRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQTQNLCPPGHFSISFQLP 105 (134)
Q Consensus 27 ~P~~di~e~~~~~~i~~~lP-Gv~~edI~V~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~~~~~g~F~r~i~LP 105 (134)
.+.|++.++.+...|.+.+| |+++.|+.|++ ..+.|.|.-. ...++ .| .|.
T Consensus 5 ~~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i---~~~~l~V~~~----------g~~~l---------~G------~L~ 56 (93)
T cd06494 5 TPWGCWYQTMDEVFIEVNVPPGTRAKDVKCKL---GSRDISLAVK----------GQEVL---------KG------KLF 56 (93)
T ss_pred CCCcEEEeEcCEEEEEEECCCCCceeeEEEEE---EcCEEEEEEC----------CEEEE---------cC------ccc
Confidence 46789999999999999888 79999999988 9999998731 11122 34 466
Q ss_pred CCCccCceEEEeCCCC-EEEEEEeecCC
Q 043145 106 GPVNPEQFSGNFGIDG-ILEGIVMKQKH 132 (134)
Q Consensus 106 ~~v~~~~i~A~~~~nG-vL~I~lPK~~~ 132 (134)
..|+++.-.=++ ++| +|.|.|.|...
T Consensus 57 ~~I~~destWtl-ed~k~l~I~L~K~~~ 83 (93)
T cd06494 57 DSVVADECTWTL-EDRKLIRIVLTKSNR 83 (93)
T ss_pred CccCcccCEEEE-ECCcEEEEEEEeCCC
Confidence 788888888889 577 58999999853
No 36
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=97.54 E-value=0.0023 Score=43.57 Aligned_cols=78 Identities=12% Similarity=0.060 Sum_probs=59.2
Q ss_pred eeeeEEEeCCEEEEEEEcCCCCCCCEEEEEEeCCCCEEEEEEEEEcccccccccccEEEEEeecCCCCeEEEEEEECCCC
Q 043145 28 GLVDIGECEDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQTQNLCPPGHFSISFQLPGP 107 (134)
Q Consensus 28 P~~di~e~~~~~~i~~~lPGv~~edI~V~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~~~~~g~F~r~i~LP~~ 107 (134)
|+++.++..+.+.|.+++|+ .+|++|++ +.+.|.++|... . .. .|.-.+.|=..
T Consensus 2 p~v~WaQr~~~V~ltI~v~d--~~d~~v~l---~~~~l~f~~~~~--~-----g~--------------~y~~~l~l~~~ 55 (106)
T cd00237 2 AKTLWYDRRDYVFIEFCVED--SKDVKVDF---EKSKLTFSCLNG--D-----NV--------------KIYNEIELYDR 55 (106)
T ss_pred CcceeeECCCEEEEEEEeCC--CCCcEEEE---ecCEEEEEEECC--C-----Cc--------------EEEEEEEeecc
Confidence 68899999999999999999 57999977 889999998421 1 11 13345677788
Q ss_pred CccCceEEEeCCCCEEEEEEeecCC
Q 043145 108 VNPEQFSGNFGIDGILEGIVMKQKH 132 (134)
Q Consensus 108 v~~~~i~A~~~~nGvL~I~lPK~~~ 132 (134)
|++++.+-+. ..--+.|.|.|.+.
T Consensus 56 I~pe~Sk~~v-~~r~ve~~L~K~~~ 79 (106)
T cd00237 56 VDPNDSKHKR-TDRSILCCLRKGKE 79 (106)
T ss_pred cCcccCeEEe-CCceEEEEEEeCCC
Confidence 8888766666 35567889999864
No 37
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=97.21 E-value=0.0014 Score=48.70 Aligned_cols=80 Identities=16% Similarity=0.114 Sum_probs=58.2
Q ss_pred eeeeeEEEeCCEEEEEEEcCCCCCCCEEEEEEeCCCCEEEEEEEEEcccccccccccEEEEEeecCCCCeEEEEEEECCC
Q 043145 27 VGLVDIGECEDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQTQNLCPPGHFSISFQLPG 106 (134)
Q Consensus 27 ~P~~di~e~~~~~~i~~~lPGv~~edI~V~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~~~~~g~F~r~i~LP~ 106 (134)
.+++|++++....+|.+-.+||.++|+.|.+ .++.|.|.-+-..+. .|.-...|-.
T Consensus 3 k~r~DwyQt~~~vvIti~~k~v~~~~v~v~~---s~~~l~~~~~~~~g~---------------------~~~l~~~L~~ 58 (196)
T KOG1309|consen 3 KIRHDWYQTETSVVITIFAKNVPKEDVNVEI---SENTLSIVIQLPSGS---------------------EYNLQLKLYH 58 (196)
T ss_pred cccceeecCCceEEEEEEecCCCccceeEEe---ecceEEEEEecCCch---------------------hhhhhHHhcc
Confidence 3578999999999999999999999999987 889988875533111 1223334556
Q ss_pred CCccCceEEEeCCCCEEEEEEeecC
Q 043145 107 PVNPEQFSGNFGIDGILEGIVMKQK 131 (134)
Q Consensus 107 ~v~~~~i~A~~~~nGvL~I~lPK~~ 131 (134)
.|.++..+-... .--++|+|+|.+
T Consensus 59 ~I~pe~~s~k~~-stKVEI~L~K~~ 82 (196)
T KOG1309|consen 59 EIIPEKSSFKVF-STKVEITLAKAE 82 (196)
T ss_pred cccccceeeEee-eeeEEEEecccc
Confidence 777776655552 556688888854
No 38
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.19 E-value=0.0029 Score=51.29 Aligned_cols=80 Identities=10% Similarity=0.037 Sum_probs=65.0
Q ss_pred eeeeEEEeCCEEEEEEEcCCCCCCCEEEEEEeCCCCEEEEEEEEEcccccccccccEEEEEeecCCCCeEEEEEEECCCC
Q 043145 28 GLVDIGECEDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQTQNLCPPGHFSISFQLPGP 107 (134)
Q Consensus 28 P~~di~e~~~~~~i~~~lPGv~~edI~V~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~~~~~g~F~r~i~LP~~ 107 (134)
+.+|++++++.+.|.+.+.|+.++++.|.+ .++.|.|+-.... . ..|...+.|-..
T Consensus 157 ~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~---~~~~l~v~~~~~~--------~-------------~~y~~~~~L~~~ 212 (356)
T PLN03088 157 YRHEFYQKPEEVVVTVFAKGVPAENVNVDF---GEQILSVVIEVPG--------E-------------DAYHLQPRLFGK 212 (356)
T ss_pred cccceeecCCEEEEEEEecCCChHHcEEEe---ecCEEEEEEecCC--------C-------------cceeeccccccc
Confidence 679999999999999999999999999988 8899988853220 0 124445788899
Q ss_pred CccCceEEEeCCCCEEEEEEeecCC
Q 043145 108 VNPEQFSGNFGIDGILEGIVMKQKH 132 (134)
Q Consensus 108 v~~~~i~A~~~~nGvL~I~lPK~~~ 132 (134)
|+++..+.+.. .--+.|+|.|.++
T Consensus 213 I~p~~s~~~v~-~~Kiei~l~K~~~ 236 (356)
T PLN03088 213 IIPDKCKYEVL-STKIEIRLAKAEP 236 (356)
T ss_pred ccccccEEEEe-cceEEEEEecCCC
Confidence 99998888884 6688999998764
No 39
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=96.98 E-value=0.025 Score=36.90 Aligned_cols=78 Identities=10% Similarity=0.029 Sum_probs=54.9
Q ss_pred eeEEEeCCEEEEEEEcCC--CCCCCEEEEEEeCCCCEEEEEEEEEcccccccccccEEEEEeecCCCCeEEEEEEECCCC
Q 043145 30 VDIGECEDSYMFRVALPG--VKRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQTQNLCPPGHFSISFQLPGP 107 (134)
Q Consensus 30 ~di~e~~~~~~i~~~lPG--v~~edI~V~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~~~~~g~F~r~i~LP~~ 107 (134)
+|++++++..+|.+...+ ..+.++.+.. ..+.|.|+-... . ..|...+.|-..
T Consensus 1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~---~~~~l~v~~~~~--~--------------------~~~~~~~~L~~~ 55 (87)
T cd06490 1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDD---QQRELRVEIILG--D--------------------KSYLLHLDLSNE 55 (87)
T ss_pred CCceECCCEEEEEEEEcccCCCCccEEEEC---CCCEEEEEEECC--C--------------------ceEEEeeecccc
Confidence 489999999999999885 4555666655 667888863211 0 125566788888
Q ss_pred CccCceEEEeC-CCCEEEEEEeecCCC
Q 043145 108 VNPEQFSGNFG-IDGILEGIVMKQKHT 133 (134)
Q Consensus 108 v~~~~i~A~~~-~nGvL~I~lPK~~~~ 133 (134)
|+++. +.++. .-|-++|+|.|.++.
T Consensus 56 I~~~~-~~~~~~~~~KVEI~L~K~e~~ 81 (87)
T cd06490 56 VQWPC-EVRISTETGKIELVLKKKEPE 81 (87)
T ss_pred CCCCc-EEEEcccCceEEEEEEcCCCC
Confidence 88774 44541 267899999998753
No 40
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=96.53 E-value=0.058 Score=36.51 Aligned_cols=81 Identities=12% Similarity=0.040 Sum_probs=59.4
Q ss_pred eeeeeEEEeCCEEEEEEEcC-CC-CCCCEEEEEEeCCCCEEEEEEEEEcccccccccccEEEEEeecCCCCeEEEEEEEC
Q 043145 27 VGLVDIGECEDSYMFRVALP-GV-KRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQTQNLCPPGHFSISFQL 104 (134)
Q Consensus 27 ~P~~di~e~~~~~~i~~~lP-Gv-~~edI~V~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~~~~~g~F~r~i~L 104 (134)
...|.+.++.+...|.+.|| |. +..|+.|.+ ..+.|.|.-... . ....++ .| .|
T Consensus 4 ~e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i---~~~~l~v~~~~~--~----~~~~~i---------~G------~L 59 (102)
T cd06495 4 RENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDL---QSSSIRVSVRDG--G----GEKVLM---------EG------EF 59 (102)
T ss_pred CCceEEEeECCeEEEEEECCCCCccceEEEEEE---EcCEEEEEEecC--C----CCceEE---------eC------cc
Confidence 56788999999999999999 54 578999988 889988874210 0 011122 34 36
Q ss_pred CCCCccCceEEEeCCCC-EEEEEEeecCC
Q 043145 105 PGPVNPEQFSGNFGIDG-ILEGIVMKQKH 132 (134)
Q Consensus 105 P~~v~~~~i~A~~~~nG-vL~I~lPK~~~ 132 (134)
...|+++.-.=++ ++| .|.|+|-|..+
T Consensus 60 ~~~V~~des~Wtl-ed~~~l~I~L~K~~~ 87 (102)
T cd06495 60 THKINTENSLWSL-EPGKCVLLSLSKCSE 87 (102)
T ss_pred cCcccCccceEEE-eCCCEEEEEEEECCC
Confidence 6788888888889 686 58999999753
No 41
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=96.40 E-value=0.063 Score=35.11 Aligned_cols=74 Identities=15% Similarity=0.043 Sum_probs=54.4
Q ss_pred eEEEeCCEEEEEEEcC---CCCCCCEEEEEEeCCCCEEEEEEEEEcccccccccccEEEEEeecCCCCeEEEEEEECCCC
Q 043145 31 DIGECEDSYMFRVALP---GVKRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQTQNLCPPGHFSISFQLPGP 107 (134)
Q Consensus 31 di~e~~~~~~i~~~lP---Gv~~edI~V~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~~~~~g~F~r~i~LP~~ 107 (134)
...++.+...|.+.+| |+++.|++|++ ..+.|.|.-. ....+. .| .|...
T Consensus 2 ~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i---~~~~l~v~~~----------g~~~~i--------~G------~L~~~ 54 (87)
T cd06492 2 RWTQTLSEVELKVPFKVSFRLKGKDVVVDI---QRKHLKVGLK----------GQPPII--------DG------ELYNE 54 (87)
T ss_pred ccEeecCEEEEEEECCCCCCccceEEEEEE---ecCEEEEEEC----------CCceEE--------eC------cccCc
Confidence 3567888999999996 37889999988 8888888531 111111 23 35678
Q ss_pred CccCceEEEeCCCC-EEEEEEeecCC
Q 043145 108 VNPEQFSGNFGIDG-ILEGIVMKQKH 132 (134)
Q Consensus 108 v~~~~i~A~~~~nG-vL~I~lPK~~~ 132 (134)
|+++.-.=++ ++| .|.|+|-|..+
T Consensus 55 V~~des~Wtl-ed~~~l~i~L~K~~~ 79 (87)
T cd06492 55 VKVEESSWLI-EDGKVVTVNLEKINK 79 (87)
T ss_pred ccccccEEEE-eCCCEEEEEEEECCC
Confidence 8888877889 686 89999999854
No 42
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=86.71 E-value=4.7 Score=31.86 Aligned_cols=82 Identities=18% Similarity=0.122 Sum_probs=65.8
Q ss_pred eeeEEEeCCEEEEEEEcCCCCCCCEEEEEEeCCCCEEEEEEEEEcccccccccccEEEEEeecCCCCeEEEEEEECCCCC
Q 043145 29 LVDIGECEDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQTQNLCPPGHFSISFQLPGPV 108 (134)
Q Consensus 29 ~~di~e~~~~~~i~~~lPGv~~edI~V~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~~~~~g~F~r~i~LP~~v 108 (134)
+.|+.+++...+|.+..-|..++.-.|.. +...|.|.=..... ...|...+.|=.-|
T Consensus 216 R~Dwhqt~~~Vti~VY~k~~lpe~s~iea---n~~~l~V~ivf~~g--------------------na~fd~d~kLwgvv 272 (320)
T KOG1667|consen 216 RHDWHQTNGFVTINVYAKGALPETSNIEA---NGTTLHVSIVFGFG--------------------NASFDLDYKLWGVV 272 (320)
T ss_pred hhhhhhcCCeEEEEEEeccCCcccceeee---CCeEEEEEEEecCC--------------------Cceeeccceeeeee
Confidence 78999999999999999999999988977 77778877443211 23477777777888
Q ss_pred ccCceEEEeCCCCEEEEEEeecCCCC
Q 043145 109 NPEQFSGNFGIDGILEGIVMKQKHTS 134 (134)
Q Consensus 109 ~~~~i~A~~~~nGvL~I~lPK~~~~s 134 (134)
++++.++.+ ----.+|+|+|.++.|
T Consensus 273 nve~s~v~m-~~tkVEIsl~k~ep~s 297 (320)
T KOG1667|consen 273 NVEESSVVM-GETKVEISLKKAEPGS 297 (320)
T ss_pred chhhceEEe-ecceEEEEEeccCCCC
Confidence 999999999 4777899999998754
No 43
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=84.40 E-value=2.6 Score=27.51 Aligned_cols=35 Identities=14% Similarity=0.193 Sum_probs=29.5
Q ss_pred CeEEEEEEECCCCCccCceEEEeCCCCEEEEEEeecC
Q 043145 95 PGHFSISFQLPGPVNPEQFSGNFGIDGILEGIVMKQK 131 (134)
Q Consensus 95 ~g~F~r~i~LP~~v~~~~i~A~~~~nGvL~I~lPK~~ 131 (134)
...|.-...|| .++.++|+-++ ++|.|+|+--+..
T Consensus 7 ~~~~~v~adlP-G~~kedI~V~v-~~~~L~I~ger~~ 41 (87)
T cd06482 7 SSNVLASVDVC-GFEPDQVKVKV-KDGKVQVSAEREN 41 (87)
T ss_pred CCEEEEEEECC-CCCHHHeEEEE-ECCEEEEEEEEec
Confidence 45678888998 67899999999 6999999987754
No 44
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=79.90 E-value=1.1 Score=35.76 Aligned_cols=80 Identities=16% Similarity=0.019 Sum_probs=57.2
Q ss_pred eeeeEEEeCCEEEEEEEcCCCCCCCEEEEEEeCCCCEEEEEEEEEcccccccccccEEEEEeecCCCCeEEEEEEECCCC
Q 043145 28 GLVDIGECEDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQTQNLCPPGHFSISFQLPGP 107 (134)
Q Consensus 28 P~~di~e~~~~~~i~~~lPGv~~edI~V~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~~~~~g~F~r~i~LP~~ 107 (134)
-++|..++.....|-+.-|-+..++|++.+ ++|+|.|+-+... .+. -|.-.++|-..
T Consensus 177 i~yd~s~Ts~t~~ifiy~~pv~deqVs~~~---e~NTL~I~~q~~~--------~~~------------~~~~~~~Ly~e 233 (368)
T COG5091 177 IAYDFSETSDTAIIFIYRPPVGDEQVSPVL---EGNTLSISYQPRR--------LRL------------WNDITISLYKE 233 (368)
T ss_pred eeeeccccceeEEEEEecCCCCccccceee---cCCcceeeeeccc--------cch------------HHHhhhhhhhh
Confidence 477888899999999999999999999988 9999999855321 111 13345667777
Q ss_pred CccCceEEEeCCCCEEEEEEeecC
Q 043145 108 VNPEQFSGNFGIDGILEGIVMKQK 131 (134)
Q Consensus 108 v~~~~i~A~~~~nGvL~I~lPK~~ 131 (134)
|+++..+-... .-++.|+|-|..
T Consensus 234 v~P~~~s~k~f-sK~~e~~l~KV~ 256 (368)
T COG5091 234 VYPDIRSIKSF-SKRVEVHLRKVE 256 (368)
T ss_pred cCcchhhhhhc-chhheehhhhhh
Confidence 77776655553 456666666643
No 45
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=75.98 E-value=4.1 Score=26.27 Aligned_cols=31 Identities=19% Similarity=0.157 Sum_probs=25.7
Q ss_pred CCEEEEEEEcCCCCCCCEEEEEEeCCCCEEEEEE
Q 043145 36 EDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKG 69 (134)
Q Consensus 36 ~~~~~i~~~lPGv~~edI~V~v~~~~~~~L~I~g 69 (134)
-..|.-.+.||.++++.++-++ .+|.|+|+-
T Consensus 61 ~g~f~r~~~lp~v~~~~i~A~~---~dGvL~I~l 91 (93)
T cd06471 61 YGSFSRSFYLPNVDEEEIKAKY---ENGVLKITL 91 (93)
T ss_pred ccEEEEEEECCCCCHHHCEEEE---ECCEEEEEE
Confidence 3456777889999999999988 999999973
No 46
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=75.36 E-value=8.3 Score=24.61 Aligned_cols=34 Identities=18% Similarity=0.318 Sum_probs=28.7
Q ss_pred CeEEEEEEECCCCCccCceEEEeCCCCEEEEEEeec
Q 043145 95 PGHFSISFQLPGPVNPEQFSGNFGIDGILEGIVMKQ 130 (134)
Q Consensus 95 ~g~F~r~i~LP~~v~~~~i~A~~~~nGvL~I~lPK~ 130 (134)
...|.-.+.|| .+++++|+-.+ ++|.|+|+--+.
T Consensus 6 ~~~~~v~~dlp-G~~~edI~V~v-~~~~L~I~g~~~ 39 (83)
T cd06478 6 KDRFSVNLDVK-HFSPEELSVKV-LGDFVEIHGKHE 39 (83)
T ss_pred CceEEEEEECC-CCCHHHeEEEE-ECCEEEEEEEEc
Confidence 35788899998 78999999999 699999988543
No 47
>PF12992 DUF3876: Domain of unknown function, B. Theta Gene description (DUF3876); InterPro: IPR024452 This bacterial family of conserved proteins has no known function.
Probab=75.34 E-value=9.9 Score=25.35 Aligned_cols=39 Identities=18% Similarity=0.120 Sum_probs=31.1
Q ss_pred eeeeeEEEeCCEEEEEEEcCCC-----CCCCEEEEEEeCCCCEEEEE
Q 043145 27 VGLVDIGECEDSYMFRVALPGV-----KRDDGDFSCEVDPMGKVLIK 68 (134)
Q Consensus 27 ~P~~di~e~~~~~~i~~~lPGv-----~~edI~V~v~~~~~~~L~I~ 68 (134)
.|++.|+++++.|.|.+--+.- .++...|+- .++.+.|.
T Consensus 25 ~P~v~I~r~g~~Y~vti~~~~~~~~~~~p~tY~i~~---~~g~~fI~ 68 (95)
T PF12992_consen 25 KPDVTIYRNGGSYKVTITYRSGYTGRAKPETYPIQE---EDGNLFIE 68 (95)
T ss_pred CCCEEEEECCCeEEEEEEEEcCcCCcccceEEEEEE---eCCEEEEe
Confidence 4899999999999999877664 667777765 77777775
No 48
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=73.90 E-value=27 Score=24.32 Aligned_cols=81 Identities=16% Similarity=0.179 Sum_probs=47.0
Q ss_pred eeeEEEeCCEEEEEEEcCCCCCCCEEEEEEeCCCCEEEEEEEEEcccccccccccEEEEEeecCCCCeEEEEEEECCCCC
Q 043145 29 LVDIGECEDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQTQNLCPPGHFSISFQLPGPV 108 (134)
Q Consensus 29 ~~di~e~~~~~~i~~~lPGv~~edI~V~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~~~~~g~F~r~i~LP~~v 108 (134)
.+.|...++ ..+.++. ..+.++++. ++++|.|+.+..... ....+..... ...-.-.+.||...
T Consensus 67 ~V~I~~~~~-~~i~v~~---~~k~~~~~~---~~~~L~I~~~~~~~~-----~~~~~~~~~~----~~~~~i~I~lP~~~ 130 (166)
T PF13349_consen 67 DVEIKPSDD-DKIKVEY---NGKKPEISV---EGGTLTIKSKDRESF-----FFKGFNFNNS----DNKSKITIYLPKDY 130 (166)
T ss_pred eEEEEEcCC-ccEEEEE---cCcEEEEEE---cCCEEEEEEeccccc-----ccceEEEccc----CCCcEEEEEECCCC
Confidence 455554333 4445555 222577766 899999986621110 0111110000 13455679999999
Q ss_pred ccCceEEEeCCCCEEEEE
Q 043145 109 NPEQFSGNFGIDGILEGI 126 (134)
Q Consensus 109 ~~~~i~A~~~~nGvL~I~ 126 (134)
..++++... .+|=++|.
T Consensus 131 ~l~~i~i~~-~~G~i~i~ 147 (166)
T PF13349_consen 131 KLDKIDIKT-SSGDITIE 147 (166)
T ss_pred ceeEEEEEe-ccccEEEE
Confidence 888999999 59977764
No 49
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=73.83 E-value=8.6 Score=24.80 Aligned_cols=34 Identities=12% Similarity=0.218 Sum_probs=28.8
Q ss_pred eEEEEEEECCCCCccCceEEEeCCCCEEEEEEeecC
Q 043145 96 GHFSISFQLPGPVNPEQFSGNFGIDGILEGIVMKQK 131 (134)
Q Consensus 96 g~F~r~i~LP~~v~~~~i~A~~~~nGvL~I~lPK~~ 131 (134)
..|.-.+.||. ++.++|+-.+ ++|.|+|+-.+..
T Consensus 11 ~~~~v~~~lPG-~~kedi~v~~-~~~~L~I~g~~~~ 44 (90)
T cd06470 11 NNYRITLAVAG-FSEDDLEIEV-ENNQLTVTGKKAD 44 (90)
T ss_pred CeEEEEEECCC-CCHHHeEEEE-ECCEEEEEEEEcc
Confidence 57888999995 7889999999 6999999976544
No 50
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=73.78 E-value=10 Score=24.48 Aligned_cols=31 Identities=23% Similarity=0.276 Sum_probs=26.1
Q ss_pred EEEEEEEcC-CCCCCCEEEEEEeCCCCEEEEEEE
Q 043145 38 SYMFRVALP-GVKRDDGDFSCEVDPMGKVLIKGV 70 (134)
Q Consensus 38 ~~~i~~~lP-Gv~~edI~V~v~~~~~~~L~I~g~ 70 (134)
+|.=.+.|| +|+.+.|+=++ ..+|+|.|.|.
T Consensus 51 ~F~R~~~LP~~Vd~~~v~A~~--~~dGvL~I~~~ 82 (83)
T cd06477 51 SFTRQYQLPDGVEHKDLSAML--CHDGILVVETK 82 (83)
T ss_pred EEEEEEECCCCcchheEEEEE--cCCCEEEEEec
Confidence 788889999 89999999864 15999999974
No 51
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=73.59 E-value=9.5 Score=24.46 Aligned_cols=34 Identities=12% Similarity=0.160 Sum_probs=28.7
Q ss_pred eEEEEEEECCCCCccCceEEEeCCCCEEEEEEeecC
Q 043145 96 GHFSISFQLPGPVNPEQFSGNFGIDGILEGIVMKQK 131 (134)
Q Consensus 96 g~F~r~i~LP~~v~~~~i~A~~~~nGvL~I~lPK~~ 131 (134)
..|.-.+.|| .+++++|+-+. ++|.|+|+--|..
T Consensus 8 ~~~~v~~dlp-G~~pedi~V~v-~~~~L~I~ger~~ 41 (81)
T cd06479 8 DTYQFAVDVS-DFSPEDIIVTT-SNNQIEVHAEKLA 41 (81)
T ss_pred CeEEEEEECC-CCCHHHeEEEE-ECCEEEEEEEEec
Confidence 4688888998 78999999999 6999999977643
No 52
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=73.58 E-value=21 Score=26.52 Aligned_cols=78 Identities=9% Similarity=0.071 Sum_probs=53.4
Q ss_pred ceeeeeEEEeCCEEEEEEEcCCCCCCCEEEEEEeCCCCEEEEEEEEEcccccccccccEEEEEeecCCCCeEEEEEEECC
Q 043145 26 VVGLVDIGECEDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQTQNLCPPGHFSISFQLP 105 (134)
Q Consensus 26 ~~P~~di~e~~~~~~i~~~lPGv~~edI~V~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~~~~~g~F~r~i~LP 105 (134)
.-|.+-+.+..+-+.+++.++-- .+..|.+ ....|+++|+..... -.|...|.|=
T Consensus 6 ~~p~v~Waqr~~~vyltv~Ved~--~d~~v~~---e~~~l~fs~k~~~d~--------------------~~~~~~ief~ 60 (180)
T KOG3158|consen 6 QPPEVKWAQRRDLVYLTVCVEDA--KDVHVNL---EPSKLTFSCKSGADN--------------------HKYENEIEFF 60 (180)
T ss_pred cCCcchhhhhcCeEEEEEEeccC--ccceeec---cccEEEEEeccCCCc--------------------eeeEEeeehh
Confidence 35778888999999999999865 5666655 888999998754211 1244557777
Q ss_pred CCCccCceEEEeCCCCEEEEEEeec
Q 043145 106 GPVNPEQFSGNFGIDGILEGIVMKQ 130 (134)
Q Consensus 106 ~~v~~~~i~A~~~~nGvL~I~lPK~ 130 (134)
..||+++.+-+- . +-+...++++
T Consensus 61 ~eIdpe~sk~k~-~-~r~if~i~~K 83 (180)
T KOG3158|consen 61 DEIDPEKSKHKR-T-SRSIFCILRK 83 (180)
T ss_pred hhcCHhhccccc-c-ceEEEEEEEc
Confidence 888888776665 2 5444444443
No 53
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=71.80 E-value=39 Score=25.17 Aligned_cols=82 Identities=16% Similarity=0.194 Sum_probs=57.2
Q ss_pred CCCCceeeeeEEEeCCEEEEEEEcC-CC-CCCCEEEEEEeCCCCEEEEEEEEEcccccccccccEEEEEeecCCCCeEEE
Q 043145 22 KVGPVVGLVDIGECEDSYMFRVALP-GV-KRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQTQNLCPPGHFS 99 (134)
Q Consensus 22 ~~~~~~P~~di~e~~~~~~i~~~lP-Gv-~~edI~V~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~~~~~g~F~ 99 (134)
..+.-.+.|.+.++=..+.|.+.+| |+ +..+|.+.+ ....|.|.-... .-++ .|.
T Consensus 13 ~ng~~~~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~I---q~~hI~V~~kg~---------~~il---------dG~-- 69 (179)
T KOG2265|consen 13 GNGADEEKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSI---QSKHIKVGLKGQ---------PPIL---------DGE-- 69 (179)
T ss_pred cCCccccceeeeeehhheEEEeecCCCCcccceEEEEe---eeeEEEEecCCC---------Ccee---------cCc--
Confidence 3456678899999999999997765 67 778999977 778777762211 1122 344
Q ss_pred EEEECCCCCccCceEEEeCCCCEEEEEEeecC
Q 043145 100 ISFQLPGPVNPEQFSGNFGIDGILEGIVMKQK 131 (134)
Q Consensus 100 r~i~LP~~v~~~~i~A~~~~nGvL~I~lPK~~ 131 (134)
|...|+++...=++ ++|.+.|.+-++.
T Consensus 70 ----L~~~vk~des~Wti-Ed~k~i~i~l~K~ 96 (179)
T KOG2265|consen 70 ----LSHSVKVDESTWTI-EDGKMIVILLKKS 96 (179)
T ss_pred ----cccccccccceEEe-cCCEEEEEEeecc
Confidence 44677888888899 7997766665543
No 54
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=71.22 E-value=9.5 Score=24.08 Aligned_cols=33 Identities=18% Similarity=0.332 Sum_probs=28.9
Q ss_pred EEEEEEECCCCCccCceEEEeCCCCEEEEEEeecC
Q 043145 97 HFSISFQLPGPVNPEQFSGNFGIDGILEGIVMKQK 131 (134)
Q Consensus 97 ~F~r~i~LP~~v~~~~i~A~~~~nGvL~I~lPK~~ 131 (134)
.|.-.+.||. +..++|+-.+ +++.|+|+--+..
T Consensus 8 ~~~v~~dlpG-~~~edI~v~v-~~~~L~I~g~~~~ 40 (83)
T cd06526 8 KFQVTLDVKG-FKPEELKVKV-SDNKLVVEGKHEE 40 (83)
T ss_pred eEEEEEECCC-CCHHHcEEEE-ECCEEEEEEEEee
Confidence 6888999995 8999999999 5999999987654
No 55
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=70.03 E-value=6.7 Score=25.28 Aligned_cols=32 Identities=16% Similarity=0.215 Sum_probs=26.9
Q ss_pred eCCEEEEEEEcC-CCCCCCEEEEEEeCCCCEEEEEE
Q 043145 35 CEDSYMFRVALP-GVKRDDGDFSCEVDPMGKVLIKG 69 (134)
Q Consensus 35 ~~~~~~i~~~lP-Gv~~edI~V~v~~~~~~~L~I~g 69 (134)
....|.-.+.|| +++.+.|+-++ .+|.|.|+-
T Consensus 58 ~~g~f~r~i~LP~~v~~~~i~A~~---~nGvL~I~l 90 (92)
T cd06472 58 SSGRFVRRFRLPENADADEVKAFL---ENGVLTVTV 90 (92)
T ss_pred eccEEEEEEECCCCCCHHHCEEEE---ECCEEEEEe
Confidence 356888899999 58889999988 999999973
No 56
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=69.94 E-value=8.3 Score=22.83 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=20.8
Q ss_pred CCCCCCCEEEEEEeCCCCEEEEEEEEEccc
Q 043145 46 PGVKRDDGDFSCEVDPMGKVLIKGVTTTGE 75 (134)
Q Consensus 46 PGv~~edI~V~v~~~~~~~L~I~g~~~~~~ 75 (134)
|+++..+|+|.+ .++.+.++|.-....
T Consensus 12 ~~~~~~~i~v~v---~~g~v~L~G~v~s~~ 38 (64)
T PF04972_consen 12 PWLPDSNISVSV---ENGVVTLSGEVPSQE 38 (64)
T ss_dssp -CTT-TTEEEEE---ECTEEEEEEEESSCH
T ss_pred cccCCCeEEEEE---ECCEEEEEeeCcHHH
Confidence 366677899988 999999999986543
No 57
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=69.43 E-value=14 Score=24.39 Aligned_cols=31 Identities=23% Similarity=0.330 Sum_probs=24.9
Q ss_pred CEEEEEEEcC-CCCCCCEEEEEEeCCCCEEEEEE
Q 043145 37 DSYMFRVALP-GVKRDDGDFSCEVDPMGKVLIKG 69 (134)
Q Consensus 37 ~~~~i~~~lP-Gv~~edI~V~v~~~~~~~L~I~g 69 (134)
.+|.=.+.|| +|+.++|+=++ ..+|.|+|.+
T Consensus 58 r~F~R~~~LP~~Vd~~~v~s~l--~~dGvL~Iea 89 (91)
T cd06480 58 KNFTKKIQLPPEVDPVTVFASL--SPEGLLIIEA 89 (91)
T ss_pred EEEEEEEECCCCCCchhEEEEe--CCCCeEEEEc
Confidence 5677788898 79999999976 2399999986
No 58
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=68.90 E-value=11 Score=23.04 Aligned_cols=32 Identities=16% Similarity=0.345 Sum_probs=26.6
Q ss_pred CEEEEEEEcCC-CCCCCEEEEEEeCCCCEEEEEEEE
Q 043145 37 DSYMFRVALPG-VKRDDGDFSCEVDPMGKVLIKGVT 71 (134)
Q Consensus 37 ~~~~i~~~lPG-v~~edI~V~v~~~~~~~L~I~g~~ 71 (134)
+.|.+.++||+ +++++.+.++ .++.|.|+=.+
T Consensus 36 ~~~~~~~~l~~~I~~e~~~~~~---~~~~l~i~L~K 68 (78)
T cd06469 36 PPYLFELDLAAPIDDEKSSAKI---GNGVLVFTLVK 68 (78)
T ss_pred CCEEEEEeCcccccccccEEEE---eCCEEEEEEEe
Confidence 56888889988 6899999988 89999998544
No 59
>PRK10743 heat shock protein IbpA; Provisional
Probab=67.88 E-value=12 Score=26.42 Aligned_cols=33 Identities=12% Similarity=0.142 Sum_probs=26.0
Q ss_pred eEEEEEEECCCCCccCceEEEeCCCCEEEEEEeec
Q 043145 96 GHFSISFQLPGPVNPEQFSGNFGIDGILEGIVMKQ 130 (134)
Q Consensus 96 g~F~r~i~LP~~v~~~~i~A~~~~nGvL~I~lPK~ 130 (134)
..|.-...|| .++.++|+-.+ ++|+|+|+--+.
T Consensus 45 ~~~~v~aelP-Gv~kedi~V~v-~~~~LtI~ge~~ 77 (137)
T PRK10743 45 NHYRIAIAVA-GFAESELEITA-QDNLLVVKGAHA 77 (137)
T ss_pred CEEEEEEECC-CCCHHHeEEEE-ECCEEEEEEEEC
Confidence 4577777888 67888899999 599999987654
No 60
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=64.12 E-value=17 Score=23.26 Aligned_cols=29 Identities=21% Similarity=0.107 Sum_probs=24.3
Q ss_pred EEEEEEEcC-CCCCCCEEEEEEeCC-CCEEEEEE
Q 043145 38 SYMFRVALP-GVKRDDGDFSCEVDP-MGKVLIKG 69 (134)
Q Consensus 38 ~~~i~~~lP-Gv~~edI~V~v~~~~-~~~L~I~g 69 (134)
+|.=.+.|| +++++.|+=++ . +|+|+|+.
T Consensus 51 eF~R~~~LP~~vd~~~v~A~~---~~dGvL~I~~ 81 (83)
T cd06476 51 EFTRTYILPMDVDPLLVRASL---SHDGILCIQA 81 (83)
T ss_pred EEEEEEECCCCCChhhEEEEe---cCCCEEEEEe
Confidence 377788999 69999999977 7 99999975
No 61
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=62.97 E-value=13 Score=23.78 Aligned_cols=31 Identities=16% Similarity=0.139 Sum_probs=25.3
Q ss_pred EEEEEEEcC-CCCCCCEEEEEEeCC-CCEEEEEEEE
Q 043145 38 SYMFRVALP-GVKRDDGDFSCEVDP-MGKVLIKGVT 71 (134)
Q Consensus 38 ~~~i~~~lP-Gv~~edI~V~v~~~~-~~~L~I~g~~ 71 (134)
+|.=.+.|| +++.+.|+=++ . +|+|+|+.-+
T Consensus 51 eF~R~~~LP~~vd~~~i~A~~---~~dGvL~I~lPk 83 (84)
T cd06498 51 EFQRKYRIPADVDPLTITSSL---SPDGVLTVCGPR 83 (84)
T ss_pred EEEEEEECCCCCChHHcEEEe---CCCCEEEEEEeC
Confidence 377788898 69999999987 7 9999998643
No 62
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=62.08 E-value=24 Score=22.77 Aligned_cols=34 Identities=18% Similarity=0.165 Sum_probs=27.2
Q ss_pred CeEEEEEEECCCCCccCceEEEeCCCCEEEEEEeec
Q 043145 95 PGHFSISFQLPGPVNPEQFSGNFGIDGILEGIVMKQ 130 (134)
Q Consensus 95 ~g~F~r~i~LP~~v~~~~i~A~~~~nGvL~I~lPK~ 130 (134)
...|.-.+.|| .++.++|+-.+ .+|.|.|+.-+.
T Consensus 6 ~~~~~i~~~lp-G~~~edi~I~~-~~~~L~I~g~~~ 39 (102)
T PF00011_consen 6 EDEYIIKVDLP-GFDKEDIKIKV-DDNKLVISGKRK 39 (102)
T ss_dssp SSEEEEEEE-T-TS-GGGEEEEE-ETTEEEEEEEEE
T ss_pred CCEEEEEEECC-CCChHHEEEEE-ecCccceeceee
Confidence 46788899999 77899999999 599999988765
No 63
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=59.83 E-value=23 Score=22.70 Aligned_cols=34 Identities=18% Similarity=0.289 Sum_probs=27.6
Q ss_pred CeEEEEEEECCCCCccCceEEEeCCCCEEEEEEeec
Q 043145 95 PGHFSISFQLPGPVNPEQFSGNFGIDGILEGIVMKQ 130 (134)
Q Consensus 95 ~g~F~r~i~LP~~v~~~~i~A~~~~nGvL~I~lPK~ 130 (134)
...|.-.+.|| .+++++|+-+. .+|.|+|+--+.
T Consensus 9 ~~~~~v~~dlp-G~~~edi~V~v-~~~~L~I~g~~~ 42 (86)
T cd06497 9 RDKFTIYLDVK-HFSPEDLTVKV-LDDYVEIHGKHS 42 (86)
T ss_pred CCEEEEEEECC-CCCHHHeEEEE-ECCEEEEEEEEc
Confidence 35688888887 57789999999 699999997643
No 64
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=58.18 E-value=26 Score=21.49 Aligned_cols=34 Identities=21% Similarity=0.361 Sum_probs=28.6
Q ss_pred eEEEEEEECCCCCccCceEEEeCCCCEEEEEEeecC
Q 043145 96 GHFSISFQLPGPVNPEQFSGNFGIDGILEGIVMKQK 131 (134)
Q Consensus 96 g~F~r~i~LP~~v~~~~i~A~~~~nGvL~I~lPK~~ 131 (134)
..|.-.+.||. ++.++++-.+ .++.|.|+.-+..
T Consensus 7 ~~~~i~~~lpg-~~~~~i~V~v-~~~~l~I~g~~~~ 40 (88)
T cd06464 7 DAYVVEADLPG-FKKEDIKVEV-EDGVLTISGEREE 40 (88)
T ss_pred CEEEEEEECCC-CCHHHeEEEE-ECCEEEEEEEEec
Confidence 46888899998 8889999999 5999999976653
No 65
>PF01954 DUF104: Protein of unknown function DUF104; InterPro: IPR008203 This family includes short archaebacterial proteins of unknown function. Archaeoglobus fulgidus has twelve copies of this protein, with several being clustered together in the genome.; PDB: 2NWT_A.
Probab=56.33 E-value=8.5 Score=23.46 Aligned_cols=14 Identities=14% Similarity=0.394 Sum_probs=10.3
Q ss_pred CceEEEeCCCCEEEE
Q 043145 111 EQFSGNFGIDGILEG 125 (134)
Q Consensus 111 ~~i~A~~~~nGvL~I 125 (134)
..|.|.| +||||.-
T Consensus 3 ~~I~aiY-e~GvlkP 16 (60)
T PF01954_consen 3 KVIEAIY-ENGVLKP 16 (60)
T ss_dssp --EEEEE-ETTEEEE
T ss_pred ceEEEEE-ECCEEEE
Confidence 3589999 6999874
No 66
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=55.30 E-value=39 Score=25.09 Aligned_cols=49 Identities=12% Similarity=0.159 Sum_probs=26.5
Q ss_pred CCCEEEEEEeCCCCEEEEEEEEEcccccccccccEEEEEeecCCCCeEEEEEEECCC
Q 043145 50 RDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQTQNLCPPGHFSISFQLPG 106 (134)
Q Consensus 50 ~edI~V~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~~~~~g~F~r~i~LP~ 106 (134)
+++++| .++.|.|++.+...........++.-.+... +|.|+-++++|.
T Consensus 31 ~~nv~v-----~~g~L~l~~~~~~~~~~~~tsg~i~S~~~f~---yG~~ear~k~~~ 79 (212)
T cd02175 31 ADNVEF-----SDGGLALTLTNDTYGEKPYACGEYRTRGFYG---YGRYEVRMKPAK 79 (212)
T ss_pred cccEEE-----ECCeEEEEEeCCcCCCCccccceEEECceEE---eeEEEEEEEcCC
Confidence 566655 6788888887653211001111121111111 899999999885
No 67
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=53.28 E-value=30 Score=24.61 Aligned_cols=33 Identities=15% Similarity=0.167 Sum_probs=25.7
Q ss_pred eEEEEEEECCCCCccCceEEEeCCCCEEEEEEeec
Q 043145 96 GHFSISFQLPGPVNPEQFSGNFGIDGILEGIVMKQ 130 (134)
Q Consensus 96 g~F~r~i~LP~~v~~~~i~A~~~~nGvL~I~lPK~ 130 (134)
..|.-...|| .++.++|.-.+ ++|.|+|+--+.
T Consensus 43 ~~y~v~adlP-Gv~kedi~V~v-~~~~LtI~ge~~ 75 (142)
T PRK11597 43 NHYRITLALA-GFRQEDLDIQL-EGTRLTVKGTPE 75 (142)
T ss_pred CEEEEEEEeC-CCCHHHeEEEE-ECCEEEEEEEEc
Confidence 3577778888 67788899999 699999987653
No 68
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=52.31 E-value=70 Score=23.70 Aligned_cols=18 Identities=17% Similarity=0.019 Sum_probs=15.7
Q ss_pred CCCEEEEEEeCCCCEEEEEEE
Q 043145 50 RDDGDFSCEVDPMGKVLIKGV 70 (134)
Q Consensus 50 ~edI~V~v~~~~~~~L~I~g~ 70 (134)
|++++|++ .++.++++|.
T Consensus 13 P~~V~v~i---~~~~v~VkGp 30 (180)
T PRK05518 13 PEGVTVEI---EGLVVTVKGP 30 (180)
T ss_pred CCCCEEEE---ECCEEEEECC
Confidence 78899988 8999999975
No 69
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=51.47 E-value=85 Score=23.00 Aligned_cols=18 Identities=17% Similarity=0.134 Sum_probs=15.6
Q ss_pred CCCEEEEEEeCCCCEEEEEEE
Q 043145 50 RDDGDFSCEVDPMGKVLIKGV 70 (134)
Q Consensus 50 ~edI~V~v~~~~~~~L~I~g~ 70 (134)
|++++|++ .++.|+|+|.
T Consensus 7 P~~V~v~i---~~~~i~vkGp 24 (170)
T TIGR03653 7 PEGVSVTI---EGNIVTVKGP 24 (170)
T ss_pred CCCCEEEE---eCCEEEEECC
Confidence 68889988 8999999975
No 70
>PF14913 DPCD: DPCD protein family
Probab=51.40 E-value=1e+02 Score=23.24 Aligned_cols=78 Identities=15% Similarity=0.239 Sum_probs=53.7
Q ss_pred eeeeeEEEeCCEEEEEEE-cCCCCCCCEEEEEEeCCCCEEEEEEEEEcccccccccccEEEEEeecCCCCeEEEEEEECC
Q 043145 27 VGLVDIGECEDSYMFRVA-LPGVKRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQTQNLCPPGHFSISFQLP 105 (134)
Q Consensus 27 ~P~~di~e~~~~~~i~~~-lPGv~~edI~V~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~~~~~g~F~r~i~LP 105 (134)
.|-+-=.++..+|.-++- || +.++--+|+++- .++.++|+-. .-.|.+.|++|
T Consensus 86 nP~~~r~dTk~~fqWRIRNLP-YP~dvYsVtvd~-~~r~ivvRTt------------------------NKKYyKk~~IP 139 (194)
T PF14913_consen 86 NPIFVRRDTKTSFQWRIRNLP-YPKDVYSVTVDE-DERCIVVRTT------------------------NKKYYKKFSIP 139 (194)
T ss_pred CCEEEEEcCccceEEEEccCC-CCccceEEEEcC-CCcEEEEECc------------------------CccceeEecCC
Confidence 344444667888888874 55 458888887733 4456877722 22355678888
Q ss_pred C------CCccCceEEEeCCCCEEEEEEeecC
Q 043145 106 G------PVNPEQFSGNFGIDGILEGIVMKQK 131 (134)
Q Consensus 106 ~------~v~~~~i~A~~~~nGvL~I~lPK~~ 131 (134)
+ +.+.+.++..+. |.-|.|+..|..
T Consensus 140 Dl~R~~l~l~~~~ls~~h~-nNTLIIsYkKP~ 170 (194)
T PF14913_consen 140 DLDRCGLPLEQSALSFAHQ-NNTLIISYKKPK 170 (194)
T ss_pred cHHhhCCCcchhhceeeee-cCeEEEEecCcH
Confidence 5 446778999994 999999998753
No 71
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=48.70 E-value=83 Score=23.51 Aligned_cols=18 Identities=17% Similarity=0.198 Sum_probs=15.9
Q ss_pred CCCEEEEEEeCCCCEEEEEEE
Q 043145 50 RDDGDFSCEVDPMGKVLIKGV 70 (134)
Q Consensus 50 ~edI~V~v~~~~~~~L~I~g~ 70 (134)
|++++|++ .++.|+|+|.
T Consensus 13 P~~V~V~i---~~~~v~VkGp 30 (190)
T PTZ00027 13 PEGVTVTV---KSRKVTVTGK 30 (190)
T ss_pred CCCCEEEE---ECCEEEEECC
Confidence 78999988 9999999975
No 72
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=46.62 E-value=21 Score=24.04 Aligned_cols=18 Identities=11% Similarity=0.039 Sum_probs=14.9
Q ss_pred CceEEEeCCCCEEEEEEee
Q 043145 111 EQFSGNFGIDGILEGIVMK 129 (134)
Q Consensus 111 ~~i~A~~~~nGvL~I~lPK 129 (134)
..+.+.+ .+|||+|+++.
T Consensus 28 ~d~D~e~-~~gVLti~f~~ 45 (105)
T cd00503 28 ADIDVET-QGGVLTLTFGN 45 (105)
T ss_pred cCEeeec-cCCEEEEEECC
Confidence 4678889 69999999983
No 73
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=46.53 E-value=96 Score=22.69 Aligned_cols=18 Identities=17% Similarity=0.123 Sum_probs=15.7
Q ss_pred CCCEEEEEEeCCCCEEEEEEE
Q 043145 50 RDDGDFSCEVDPMGKVLIKGV 70 (134)
Q Consensus 50 ~edI~V~v~~~~~~~L~I~g~ 70 (134)
|++++|++ +++.|+|+|.
T Consensus 11 P~~V~v~~---~~~~v~v~Gp 28 (175)
T TIGR03654 11 PAGVEVTI---DGNVVTVKGP 28 (175)
T ss_pred CCCcEEEE---eCCEEEEEcC
Confidence 68899988 8999999975
No 74
>KOG3413 consensus Mitochondrial matrix protein frataxin, involved in Fe/S protein biosynthesis [Inorganic ion transport and metabolism]
Probab=45.89 E-value=11 Score=27.35 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=16.3
Q ss_pred CCCccCceEEEeCCCCEEEEEEe
Q 043145 106 GPVNPEQFSGNFGIDGILEGIVM 128 (134)
Q Consensus 106 ~~v~~~~i~A~~~~nGvL~I~lP 128 (134)
+.+..+.--+.| .||||+|.|+
T Consensus 67 e~~~~~~~Dv~y-~~GVLTl~lg 88 (156)
T KOG3413|consen 67 EEVPGEGFDVDY-ADGVLTLKLG 88 (156)
T ss_pred hhcCcccccccc-ccceEEEEec
Confidence 444445556789 5999999997
No 75
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=45.83 E-value=21 Score=24.13 Aligned_cols=18 Identities=11% Similarity=0.038 Sum_probs=14.6
Q ss_pred ceEEEeCCCCEEEEEEeec
Q 043145 112 QFSGNFGIDGILEGIVMKQ 130 (134)
Q Consensus 112 ~i~A~~~~nGvL~I~lPK~ 130 (134)
++.+.+ .+|||+|+++..
T Consensus 28 d~D~e~-~~gVLti~f~~~ 45 (105)
T PRK00446 28 DIDCER-NGGVLTLTFENG 45 (105)
T ss_pred Ceeeec-cCCEEEEEECCC
Confidence 377889 699999999853
No 76
>TIGR03421 FeS_CyaY iron donor protein CyaY. Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set.
Probab=45.61 E-value=21 Score=24.01 Aligned_cols=17 Identities=12% Similarity=0.098 Sum_probs=14.3
Q ss_pred ceEEEeCCCCEEEEEEee
Q 043145 112 QFSGNFGIDGILEGIVMK 129 (134)
Q Consensus 112 ~i~A~~~~nGvL~I~lPK 129 (134)
++.+.+ .+|||+|+++.
T Consensus 26 d~D~e~-~~gVLti~f~~ 42 (102)
T TIGR03421 26 DIDCER-AGGVLTLTFEN 42 (102)
T ss_pred Ceeeec-CCCEEEEEECC
Confidence 477889 69999999974
No 77
>cd02180 GH16_fungal_KRE6_glucanase Saccharomyces cerevisiae KRE6 and related glucanses, member of glycosyl hydrolase family 16. KRE6 is a Saccharomyces cerevisiae glucanase that participates in the synthesis of beta-1,6-glucan, a major structural component of the cell wall. It is a golgi membrane protein required for normal beta-1,6-glucan levels in the cell wall. KRE6 is closely realted to laminarinase, a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=45.38 E-value=81 Score=25.18 Aligned_cols=49 Identities=16% Similarity=0.112 Sum_probs=28.4
Q ss_pred CCCCEEEEEEeCCCCEEEEEEEEEcccccccccccEE---EEEeecCCCCeEEEEEEECCC
Q 043145 49 KRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVF---EMQTQNLCPPGHFSISFQLPG 106 (134)
Q Consensus 49 ~~edI~V~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~---~~e~~~~~~~g~F~r~i~LP~ 106 (134)
.++++.| .++.|.|++.+...........++. +.... +|.|+-+++||.
T Consensus 39 ~~~nv~v-----~~G~L~I~a~~~~~~~~~ytSg~i~T~~k~~f~----yG~~EaR~klp~ 90 (295)
T cd02180 39 DPDAVTT-----INGSLRITMDQFRNHGLNFRSGMLQSWNKLCFT----GGYIEASASLPG 90 (295)
T ss_pred cCcCeEe-----cCCeEEEEEEeecCCCCCEEEEEEEECCcceee----CCEEEEEEECCC
Confidence 4567654 8999999998753211000111111 11223 889999999996
No 78
>PF07873 YabP: YabP family; InterPro: IPR022476 Members of this protein family are the YabP and YqfC proteins of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. ; PDB: 2KYI_B 3IPF_B 2KS0_A.
Probab=42.34 E-value=25 Score=21.50 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=18.7
Q ss_pred CCCCCEEEEEEeCCCCEEEEEEEEE
Q 043145 48 VKRDDGDFSCEVDPMGKVLIKGVTT 72 (134)
Q Consensus 48 v~~edI~V~v~~~~~~~L~I~g~~~ 72 (134)
++.+.|.+.. ..+.|.|+|+.-
T Consensus 23 f~~~~I~l~t---~~g~l~I~G~~L 44 (66)
T PF07873_consen 23 FDDEEIRLNT---KKGKLTIKGEGL 44 (66)
T ss_dssp EETTEEEEEE---TTEEEEEEEEEE
T ss_pred ECCCEEEEEe---CCEEEEEECceE
Confidence 5678899988 999999999864
No 79
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=41.29 E-value=1.1e+02 Score=22.34 Aligned_cols=18 Identities=17% Similarity=0.119 Sum_probs=15.7
Q ss_pred CCCEEEEEEeCCCCEEEEEEE
Q 043145 50 RDDGDFSCEVDPMGKVLIKGV 70 (134)
Q Consensus 50 ~edI~V~v~~~~~~~L~I~g~ 70 (134)
|++++|++ .++.|+|+|.
T Consensus 12 P~~V~v~~---~~~~v~vkGp 29 (178)
T PRK05498 12 PAGVEVTI---NGNVVTVKGP 29 (178)
T ss_pred CCCCEEEE---ECCEEEEECC
Confidence 68899988 9999999975
No 80
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=40.03 E-value=27 Score=23.57 Aligned_cols=18 Identities=11% Similarity=-0.003 Sum_probs=15.0
Q ss_pred CceEEEeCCCCEEEEEEee
Q 043145 111 EQFSGNFGIDGILEGIVMK 129 (134)
Q Consensus 111 ~~i~A~~~~nGvL~I~lPK 129 (134)
..+.+.+ .+|||+|+++.
T Consensus 30 ~d~d~e~-~~gVLti~~~~ 47 (109)
T PF01491_consen 30 ADIDVER-SGGVLTIEFPD 47 (109)
T ss_dssp STEEEEE-ETTEEEEEETT
T ss_pred CceEEEc-cCCEEEEEECC
Confidence 3688999 59999999974
No 81
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=39.65 E-value=55 Score=21.43 Aligned_cols=30 Identities=10% Similarity=0.058 Sum_probs=25.6
Q ss_pred EEEEEEECCCCCccCceEEEeCCCCEEEEEE
Q 043145 97 HFSISFQLPGPVNPEQFSGNFGIDGILEGIV 127 (134)
Q Consensus 97 ~F~r~i~LP~~v~~~~i~A~~~~nGvL~I~l 127 (134)
.-.-+|+||..+..+++...+ ...-|+|.+
T Consensus 16 eV~v~i~lp~~~~~kdv~V~i-~~~~l~V~~ 45 (93)
T cd06494 16 EVFIEVNVPPGTRAKDVKCKL-GSRDISLAV 45 (93)
T ss_pred EEEEEEECCCCCceeeEEEEE-EcCEEEEEE
Confidence 455678999999999999999 598888887
No 82
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=39.13 E-value=86 Score=20.89 Aligned_cols=34 Identities=18% Similarity=0.228 Sum_probs=27.5
Q ss_pred eeEEEeCCEEEEEEEcCCCCCCCEEEEEEeCCCCEEEEEEE
Q 043145 30 VDIGECEDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKGV 70 (134)
Q Consensus 30 ~di~e~~~~~~i~~~lPGv~~edI~V~v~~~~~~~L~I~g~ 70 (134)
+++.+.+| .|....||.+ .|+|.. +++.|.|.+.
T Consensus 26 ~~v~~eGD--~ivas~pgis--~ieik~---E~kkL~v~t~ 59 (96)
T COG4004 26 WTVSEEGD--RIVASSPGIS--RIEIKP---ENKKLLVNTT 59 (96)
T ss_pred eeEeeccc--EEEEecCCce--EEEEec---ccceEEEecc
Confidence 57888888 7788999985 577766 8899999984
No 83
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=39.06 E-value=69 Score=24.59 Aligned_cols=43 Identities=9% Similarity=0.135 Sum_probs=24.3
Q ss_pred CCCEEEEEEEEEccc----ccccccccEEEEEeecCCCCeEEEEEEECCC
Q 043145 61 PMGKVLIKGVTTTGE----KSVYKYSQVFEMQTQNLCPPGHFSISFQLPG 106 (134)
Q Consensus 61 ~~~~L~I~g~~~~~~----~~~~~~~~~~~~e~~~~~~~g~F~r~i~LP~ 106 (134)
.++.|.|++.+.... .......++.-... ..||.|+-+++||.
T Consensus 63 ~~G~L~i~a~~~~~~~~~~~~~~tsg~i~t~~~---~~YG~~EaR~K~p~ 109 (258)
T cd02178 63 EDGNLVLSATRHPGTELGNGYKVTTGSITSKEK---VKYGYFEARAKASN 109 (258)
T ss_pred ECCEEEEEEEcCCCCcCCCCccEEEEEEEeCCc---eEEEEEEEEEEcCC
Confidence 889999999876431 00000111111111 12899999999985
No 84
>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms]
Probab=38.89 E-value=52 Score=24.84 Aligned_cols=38 Identities=13% Similarity=0.124 Sum_probs=32.6
Q ss_pred eeeEEEeCCEEEEEEEcCCCCCCCEEEEEEeCCCCEEEEEE
Q 043145 29 LVDIGECEDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKG 69 (134)
Q Consensus 29 ~~di~e~~~~~~i~~~lPGv~~edI~V~v~~~~~~~L~I~g 69 (134)
.+-+.++++...+.+.|-||..|++.|.+ ....|-|.-
T Consensus 76 ~ygWDQs~kfVK~yItL~GV~eenVqv~f---tp~Sldl~v 113 (224)
T KOG3260|consen 76 LYGWDQSNKFVKMYITLEGVDEENVQVEF---TPMSLDLKV 113 (224)
T ss_pred hcCccccCCeeEEEEEeecccccceeEEe---cccceeeee
Confidence 45577788999999999999999999988 888887773
No 85
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=38.11 E-value=89 Score=18.66 Aligned_cols=39 Identities=10% Similarity=0.089 Sum_probs=27.8
Q ss_pred eeEE-EeCCEEEEEEEcCCCCCCCEEEEEEeCCCCEEEEEEE
Q 043145 30 VDIG-ECEDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKGV 70 (134)
Q Consensus 30 ~di~-e~~~~~~i~~~lPGv~~edI~V~v~~~~~~~L~I~g~ 70 (134)
+.+. =....|.|++..||+..-.-.|.+ ..+....|+.+
T Consensus 27 ~~~~~l~~G~~~v~v~~~Gy~~~~~~v~v--~~~~~~~v~~~ 66 (71)
T PF08308_consen 27 LTLKDLPPGEHTVTVEKPGYEPYTKTVTV--KPGETTTVNVT 66 (71)
T ss_pred ceeeecCCccEEEEEEECCCeeEEEEEEE--CCCCEEEEEEE
Confidence 3444 357899999999999887777755 23556666654
No 86
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=37.68 E-value=1.1e+02 Score=22.38 Aligned_cols=18 Identities=22% Similarity=0.213 Sum_probs=15.4
Q ss_pred CCCEEEEEEeCCCCEEEEEEE
Q 043145 50 RDDGDFSCEVDPMGKVLIKGV 70 (134)
Q Consensus 50 ~edI~V~v~~~~~~~L~I~g~ 70 (134)
|++++|++ +++.|+|+|.
T Consensus 12 P~~V~v~i---~~~~v~vkGp 29 (178)
T CHL00140 12 PDNVNVSI---DDQIIKVKGP 29 (178)
T ss_pred CCCCEEEE---ECCEEEEECC
Confidence 68889988 8999999975
No 87
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=37.19 E-value=28 Score=23.18 Aligned_cols=15 Identities=13% Similarity=0.177 Sum_probs=12.5
Q ss_pred EEEeCCCCEEEEEEee
Q 043145 114 SGNFGIDGILEGIVMK 129 (134)
Q Consensus 114 ~A~~~~nGvL~I~lPK 129 (134)
.+.+ .+|||+|+++.
T Consensus 30 D~e~-~~gVLti~~~~ 44 (97)
T TIGR03422 30 DVEY-SSGVLTLELPS 44 (97)
T ss_pred cccc-CCCEEEEEECC
Confidence 6778 69999999874
No 88
>PRK11198 LysM domain/BON superfamily protein; Provisional
Probab=36.39 E-value=50 Score=23.38 Aligned_cols=26 Identities=19% Similarity=0.311 Sum_probs=21.9
Q ss_pred CCCCCCCEEEEEEeCCCCEEEEEEEEEcc
Q 043145 46 PGVKRDDGDFSCEVDPMGKVLIKGVTTTG 74 (134)
Q Consensus 46 PGv~~edI~V~v~~~~~~~L~I~g~~~~~ 74 (134)
.|+...++.|.+ .+|+++++|.....
T Consensus 38 ~~~~~~~i~V~v---~~G~v~l~G~v~s~ 63 (147)
T PRK11198 38 QGLGDADVNVQV---EDGKATVSGDAASQ 63 (147)
T ss_pred cCCCcCCceEEE---eCCEEEEEEEeCCH
Confidence 477888899988 99999999997643
No 89
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=35.37 E-value=1.5e+02 Score=22.07 Aligned_cols=54 Identities=11% Similarity=0.161 Sum_probs=30.9
Q ss_pred cCCCCCCCEEEEEEeCCCCEEEEEEEEEccc---ccccccccEEE---EEeecCCCCeEEEEEEECCCC
Q 043145 45 LPGVKRDDGDFSCEVDPMGKVLIKGVTTTGE---KSVYKYSQVFE---MQTQNLCPPGHFSISFQLPGP 107 (134)
Q Consensus 45 lPGv~~edI~V~v~~~~~~~L~I~g~~~~~~---~~~~~~~~~~~---~e~~~~~~~g~F~r~i~LP~~ 107 (134)
+.-..++++.| .++.|.|++.+.... .......++.- .... +|.|+-+++||..
T Consensus 32 ~~~~~~~nv~v-----~~G~L~i~~~~~~~~~~~~~~~~sg~i~S~~~~~~~----yG~~E~r~k~~~~ 91 (235)
T cd08023 32 YYTYRPENAYV-----EDGNLVITARKEPDKGGDGYPYTSGRITTKGKFSFT----YGRVEARAKLPKG 91 (235)
T ss_pred EEeCCCCCeEE-----ECCEEEEEEEECCCCCCCcccEEEEEEEECCCccee----CCEEEEEEEccCC
Confidence 33456777765 789999998876421 00000111111 1112 7999999999853
No 90
>TIGR02856 spore_yqfC sporulation protein YqfC. This small protein, designated YqfC in Bacillus subtilis, is both restricted to and universal in sporulating species of the Firmcutes, such as Bacillus subtilis and Clostridium perfringens. It is part of the sigma(E)-controlled regulon, and its mutation leads to a sporulation defect.
Probab=34.98 E-value=34 Score=22.19 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=19.2
Q ss_pred CCCCCCEEEEEEeCCCCEEEEEEEEE
Q 043145 47 GVKRDDGDFSCEVDPMGKVLIKGVTT 72 (134)
Q Consensus 47 Gv~~edI~V~v~~~~~~~L~I~g~~~ 72 (134)
-|+.+.|.++. ..+.|.|+|+.-
T Consensus 40 ~y~~~~I~l~t---~~G~l~I~G~~L 62 (85)
T TIGR02856 40 VFSPEEVKLNS---TNGKITIEGKNF 62 (85)
T ss_pred EECCCEEEEEc---CceEEEEEcccE
Confidence 46788999988 999999999853
No 91
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=34.82 E-value=1.7e+02 Score=21.87 Aligned_cols=18 Identities=28% Similarity=0.226 Sum_probs=15.9
Q ss_pred CCCEEEEEEeCCCCEEEEEEE
Q 043145 50 RDDGDFSCEVDPMGKVLIKGV 70 (134)
Q Consensus 50 ~edI~V~v~~~~~~~L~I~g~ 70 (134)
|++++|++ .++.|+|+|.
T Consensus 12 P~~V~V~i---~~~~ItVkGp 29 (189)
T PTZ00179 12 PEDVTVSV---KDRIVTVKGK 29 (189)
T ss_pred CCCCEEEE---eCCEEEEECC
Confidence 78999988 9999999975
No 92
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=34.44 E-value=1.1e+02 Score=21.33 Aligned_cols=34 Identities=12% Similarity=0.063 Sum_probs=22.8
Q ss_pred CEEEEEEEcCC-CCCCCEEEEEEeCCCCEEEEEEEEEc
Q 043145 37 DSYMFRVALPG-VKRDDGDFSCEVDPMGKVLIKGVTTT 73 (134)
Q Consensus 37 ~~~~i~~~lPG-v~~edI~V~v~~~~~~~L~I~g~~~~ 73 (134)
..|.=.+.||. |+++.+.-++ .+|+|+|.-.+..
T Consensus 100 ~~f~r~~~Lp~~v~~~~~~A~~---~nGvL~I~lpk~~ 134 (146)
T COG0071 100 GEFERTFRLPEKVDPEVIKAKY---KNGLLTVTLPKAE 134 (146)
T ss_pred eeEEEEEECcccccccceeeEe---eCcEEEEEEeccc
Confidence 45555666665 5556677777 8888888866543
No 93
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=32.84 E-value=1.8e+02 Score=21.59 Aligned_cols=38 Identities=24% Similarity=0.213 Sum_probs=29.4
Q ss_pred eCCEEEEEEEcCCCCCCCEEEEEEeCCCCEEEEEEEEEccc
Q 043145 35 CEDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKGVTTTGE 75 (134)
Q Consensus 35 ~~~~~~i~~~lPGv~~edI~V~v~~~~~~~L~I~g~~~~~~ 75 (134)
.++.|+=++.||--..+-.++++ ++++|.|+-+++++.
T Consensus 134 ~~~~~~krv~L~~~~~e~~~~t~---nNgILEIri~~~~~~ 171 (177)
T PF05455_consen 134 VGEKYLKRVALPWPDPEITSATF---NNGILEIRIRRTEES 171 (177)
T ss_pred cCCceEeeEecCCCccceeeEEE---eCceEEEEEeecCCC
Confidence 34446668889866678889988 999999998887544
No 94
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=31.59 E-value=2e+02 Score=25.20 Aligned_cols=44 Identities=16% Similarity=0.183 Sum_probs=31.9
Q ss_pred eeeEEEeC------CEEEEEEEcCCCCC-----CCEEEEEEeCCCCEEEEEEEEE
Q 043145 29 LVDIGECE------DSYMFRVALPGVKR-----DDGDFSCEVDPMGKVLIKGVTT 72 (134)
Q Consensus 29 ~~di~e~~------~~~~i~~~lPGv~~-----edI~V~v~~~~~~~L~I~g~~~ 72 (134)
.+.|++.+ +.++=.+.|+|+.+ ..|+|+++++.+|.|.|++.-.
T Consensus 412 ~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~vtf~id~~Gil~V~a~~~ 466 (595)
T PRK01433 412 QFHILQGEREMAADCRSLARFELKGLPPMKAGSIRAEVTFAIDADGILSVSAYEK 466 (595)
T ss_pred EEEEEeccccccCCCcEEEEEEEcCCCCCCCCCccEEEEEEECCCCcEEEEEEEc
Confidence 45666643 34555778888765 3688888899999999998643
No 95
>TIGR02892 spore_yabP sporulation protein YabP. Members of this protein family are the YabP protein of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. In Bacillus subtilis, a yabP single mutant appears to sporulate and germinate normally (PubMed:11283287), but is in an operon with yabQ (essential for formation of the spore cortex), it near-universal among endospore-forming bacteria, and is found nowhere else. It is likely, therefore, that YabP does have a function in sporulation or germination, one that is either unappreciated or partially redundant with that of another protein.
Probab=30.74 E-value=44 Score=21.75 Aligned_cols=21 Identities=24% Similarity=0.278 Sum_probs=15.2
Q ss_pred CCCCCEEEEEEeCCCCEEEEEEEE
Q 043145 48 VKRDDGDFSCEVDPMGKVLIKGVT 71 (134)
Q Consensus 48 v~~edI~V~v~~~~~~~L~I~g~~ 71 (134)
|+.+.|.+.. ..+.|.|+|+.
T Consensus 22 fd~~~I~l~T---~~G~L~I~G~~ 42 (85)
T TIGR02892 22 FDDEEILLET---VMGFLTIKGQE 42 (85)
T ss_pred ECCCEEEEEe---CcEEEEEEcce
Confidence 4566777766 77888888874
No 96
>PF12080 GldM_C: GldM C-terminal domain; InterPro: IPR022719 This domain is found in bacteria at the C terminus of the GldM protein. This domain is typically between 169 to 182 amino acids in length and has two completely conserved residues (Y and N) that may be functionally important. GldM, is named for the member from Bacteriodetes Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes [].
Probab=30.15 E-value=71 Score=23.55 Aligned_cols=37 Identities=16% Similarity=0.190 Sum_probs=24.1
Q ss_pred eeEEEeCCEEEEEEEcCCCCCCCEEEEEEeCCCCEEEEEE
Q 043145 30 VDIGECEDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKG 69 (134)
Q Consensus 30 ~di~e~~~~~~i~~~lPGv~~edI~V~v~~~~~~~L~I~g 69 (134)
+++..-+=.=-|.+.+||+..+.+.++. .++.|.=+|
T Consensus 7 MNVLY~G~~NpisIsvpgv~~~~v~~s~---~ggsl~~~g 43 (181)
T PF12080_consen 7 MNVLYRGVDNPISISVPGVPSNKVPASA---TGGSLSKSG 43 (181)
T ss_pred cceEecCCCCcEEEEeCCCCccccEEEe---eCCEEEecC
Confidence 4444433333577889999999999877 666554443
No 97
>COG4856 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.92 E-value=2.1e+02 Score=24.03 Aligned_cols=36 Identities=17% Similarity=0.225 Sum_probs=26.1
Q ss_pred eeeEEEeCCEEEEEEEcCCCCCCCEEEEEEeCCC-CEEEEEEEEE
Q 043145 29 LVDIGECEDSYMFRVALPGVKRDDGDFSCEVDPM-GKVLIKGVTT 72 (134)
Q Consensus 29 ~~di~e~~~~~~i~~~lPGv~~edI~V~v~~~~~-~~L~I~g~~~ 72 (134)
++||+.+.+.|.| +|+ ++.+.|.+ .+ +.+.+..+..
T Consensus 53 pvdvlYD~~~y~i----sg~-~etV~Vtl---~G~ns~~~~~~~~ 89 (403)
T COG4856 53 PVDVLYDSDKYFI----SGQ-PETVTVTL---KGPNSIVLKSEKP 89 (403)
T ss_pred eeEEEEccccccc----cCC-ceEEEEEE---eCCcceeeeeecC
Confidence 7899998888864 677 77788866 65 6666665544
No 98
>PF08845 SymE_toxin: Toxin SymE, type I toxin-antitoxin system; InterPro: IPR014944 This entry represents a SOS-induced gene whose product shows homology to the antitoxin MazE (SymE), the coding region contains a cis-encoded antisense RNA. The small antisense RNA and the gene have the all the hallmarks of a toxin-antitoxin module. The synthesis of the SymE is tightly repressed at multiple levels; at the transcriptional level by the LexA repressor, at the level of mRNA stability and translation by the SymR RNA and at the level of protein stability by the Lon protease. SymE co-purifies with ribosomes and overproduction of the protein leads to cell growth inhibition, decreased protein synthesis and increased RNA degradation. These properties are shared with several RNA endonuclease toxins of toxin-antitoxin modules. It seems probable that the SymE protein represents an evolutionary derivative of a toxin containing the AbrB fold, whose representatives are typically antitoxins. The SymE promoted cleavage of RNA cleavage may be important for the recycling of RNAs damaged under SOS-inducing conditions []. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0016070 RNA metabolic process, 0005737 cytoplasm
Probab=27.98 E-value=83 Score=18.83 Aligned_cols=23 Identities=17% Similarity=0.169 Sum_probs=18.5
Q ss_pred EEcCCCCC-CCEEEEEEeCCCCEEEEE
Q 043145 43 VALPGVKR-DDGDFSCEVDPMGKVLIK 68 (134)
Q Consensus 43 ~~lPGv~~-edI~V~v~~~~~~~L~I~ 68 (134)
++-.||.. +.|+|++ .++.|.|+
T Consensus 33 L~~aGF~~G~~v~V~v---~~g~lvIt 56 (57)
T PF08845_consen 33 LEEAGFTIGDPVKVRV---MPGCLVIT 56 (57)
T ss_pred hHHhCCCCCCEEEEEE---ECCEEEEe
Confidence 45678876 6899988 99999987
No 99
>PRK10568 periplasmic protein; Provisional
Probab=26.94 E-value=95 Score=23.16 Aligned_cols=27 Identities=15% Similarity=0.144 Sum_probs=22.6
Q ss_pred cCCCCCCCEEEEEEeCCCCEEEEEEEEEcc
Q 043145 45 LPGVKRDDGDFSCEVDPMGKVLIKGVTTTG 74 (134)
Q Consensus 45 lPGv~~edI~V~v~~~~~~~L~I~g~~~~~ 74 (134)
-|+++..+|+|.+ .+|.+.++|.-...
T Consensus 72 ~~~i~~~~I~V~v---~~G~V~L~G~V~s~ 98 (203)
T PRK10568 72 HDNIKSTDISVKT---HQKVVTLSGFVESQ 98 (203)
T ss_pred CCCCCCCceEEEE---ECCEEEEEEEeCCH
Confidence 3677788999988 99999999998643
No 100
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=26.07 E-value=3.1e+02 Score=21.20 Aligned_cols=67 Identities=15% Similarity=0.185 Sum_probs=35.0
Q ss_pred EEcCCCCCCCEEEEEEeCCCCEEEEEEEEEcccccccccccEEEEEeecCCCCeEEEEEEECCCCCccCceEEEeCCCCE
Q 043145 43 VALPGVKRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQTQNLCPPGHFSISFQLPGPVNPEQFSGNFGIDGI 122 (134)
Q Consensus 43 ~~lPGv~~edI~V~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~~~~~g~F~r~i~LP~~v~~~~i~A~~~~nGv 122 (134)
-.|||+..|==-|++.- .++.|.... .+...++.... .|...|+++|...-|++.|.. . .||.
T Consensus 15 ~~l~g~~~e~SGLTy~p-d~~tLfaV~---------d~~~~i~els~-----~G~vlr~i~l~g~~D~EgI~y-~-g~~~ 77 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNP-DTGTLFAVQ---------DEPGEIYELSL-----DGKVLRRIPLDGFGDYEGITY-L-GNGR 77 (248)
T ss_dssp EE-TT--S-EEEEEEET-TTTEEEEEE---------TTTTEEEEEET-----T--EEEEEE-SS-SSEEEEEE---STTE
T ss_pred eECCCccCCccccEEcC-CCCeEEEEE---------CCCCEEEEEcC-----CCCEEEEEeCCCCCCceeEEE-E-CCCE
Confidence 57999988633344422 456654431 22334444432 589999999998889998854 6 4887
Q ss_pred EEEE
Q 043145 123 LEGI 126 (134)
Q Consensus 123 L~I~ 126 (134)
+.|+
T Consensus 78 ~vl~ 81 (248)
T PF06977_consen 78 YVLS 81 (248)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6654
No 101
>smart00675 DM11 Domains in hypothetical proteins in Drosophila including 2 in CG15241 and CG9329.
Probab=25.75 E-value=2e+02 Score=21.00 Aligned_cols=23 Identities=13% Similarity=0.002 Sum_probs=16.7
Q ss_pred CCCCCCEEEEEEeCCCCEEEEEEEEE
Q 043145 47 GVKRDDGDFSCEVDPMGKVLIKGVTT 72 (134)
Q Consensus 47 Gv~~edI~V~v~~~~~~~L~I~g~~~ 72 (134)
+++-++++++. .++.|.|+|..+
T Consensus 29 ~~D~S~l~~~~---d~~~i~vsGn~t 51 (164)
T smart00675 29 AFDISNLVVDM---DPDGLHISGNIT 51 (164)
T ss_pred ccchhheEEEE---cCCeEEEeeeEE
Confidence 45566777765 778888888865
No 102
>cd00413 Glyco_hydrolase_16 glycosyl hydrolase family 16. The O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycosyl hydrolase family 16. Family 16 includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=25.24 E-value=2.6e+02 Score=20.06 Aligned_cols=51 Identities=10% Similarity=0.141 Sum_probs=28.6
Q ss_pred CCCCCEEEEEEeCCC-CEEEEEEEEEcccccccccccEEE-EEeecCCCCeEEEEEEECCCC
Q 043145 48 VKRDDGDFSCEVDPM-GKVLIKGVTTTGEKSVYKYSQVFE-MQTQNLCPPGHFSISFQLPGP 107 (134)
Q Consensus 48 v~~edI~V~v~~~~~-~~L~I~g~~~~~~~~~~~~~~~~~-~e~~~~~~~g~F~r~i~LP~~ 107 (134)
..++++.+ .+ +.|.|++.+...... ....++.- ..... +|.|+-++++|..
T Consensus 27 ~~~~nv~~-----~~~G~L~l~~~~~~~~~~-~~sg~i~s~~~~~~---yG~~ear~k~~~~ 79 (210)
T cd00413 27 NSPNNVYV-----ENDGGLTLRTDRDQTDGP-YSSAEIDSQKNNYT---YGYYEARAKLAGG 79 (210)
T ss_pred ECccCEEE-----eCCCeEEEEEEecCCCCc-eEeEEEEeCcceEe---eEEEEEEEEcCCC
Confidence 35677665 55 889999876532000 11111111 11111 7999999999874
No 103
>COG2880 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.50 E-value=7.7 Score=24.30 Aligned_cols=12 Identities=17% Similarity=0.459 Sum_probs=9.3
Q ss_pred ceEEEeCCCCEEE
Q 043145 112 QFSGNFGIDGILE 124 (134)
Q Consensus 112 ~i~A~~~~nGvL~ 124 (134)
=|.|.| +||||.
T Consensus 6 IIEaiY-EnGVfK 17 (67)
T COG2880 6 IIEAIY-ENGVLK 17 (67)
T ss_pred HHHHHH-hccccc
Confidence 367889 799985
No 104
>cd02182 GH16_Strep_laminarinase_like Streptomyces laminarinase-like, member of glycosyl hydrolase family 16. Proteins similar to Streptomyces sioyaensis beta-1,3-glucanase (laminarinase) present in Actinomycetales as well as Peziomycotina. Laminarinases belong to glycosyl hydrolase family 16 and hydrolyze the glycosidic bond of the 1,3-beta-linked glucan, a major component of fungal and plant cell walls and the structural and storage polysaccharides (laminarin) of marine macro-algae. Members of the GH16 family have a conserved jelly roll fold with an active site channel.
Probab=23.03 E-value=2.8e+02 Score=21.20 Aligned_cols=19 Identities=11% Similarity=0.167 Sum_probs=14.4
Q ss_pred CCCEEEEEEeCC-CCEEEEEEEEEc
Q 043145 50 RDDGDFSCEVDP-MGKVLIKGVTTT 73 (134)
Q Consensus 50 ~edI~V~v~~~~-~~~L~I~g~~~~ 73 (134)
++++.| . ++.|.|++.+..
T Consensus 45 ~~n~~v-----~~dG~L~I~a~~~~ 64 (259)
T cd02182 45 TANVQL-----SGNGTLQITPLRDG 64 (259)
T ss_pred CcCEEE-----cCCCeEEEEEEecC
Confidence 466655 6 899999998763
No 105
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=22.86 E-value=2.2e+02 Score=24.57 Aligned_cols=44 Identities=16% Similarity=0.278 Sum_probs=34.7
Q ss_pred eeeEEEe------CCEEEEEEEcCCCCCC-----CEEEEEEeCCCCEEEEEEEEE
Q 043145 29 LVDIGEC------EDSYMFRVALPGVKRD-----DGDFSCEVDPMGKVLIKGVTT 72 (134)
Q Consensus 29 ~~di~e~------~~~~~i~~~lPGv~~e-----dI~V~v~~~~~~~L~I~g~~~ 72 (134)
.+.|||. +++..=.++|-|+.|. +|+|+.+++.++.|.++++-+
T Consensus 469 ~I~vyEGER~mtkdn~lLGkFdltGipPAPRGvpqIEVtFevDangiL~VsAeDK 523 (663)
T KOG0100|consen 469 TIQVYEGERPMTKDNHLLGKFDLTGIPPAPRGVPQIEVTFEVDANGILQVSAEDK 523 (663)
T ss_pred EEEEeeccccccccccccccccccCCCCCCCCCccEEEEEEEccCceEEEEeecc
Confidence 4566773 4556668999999863 899999999999999999854
No 106
>PF00722 Glyco_hydro_16: Glycosyl hydrolases family 16; InterPro: IPR000757 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 16 GH16 from CAZY comprises enzymes with a number of known activities; lichenase (3.2.1.73 from EC); xyloglucan xyloglucosyltransferase (2.4.1.207 from EC); agarase (3.2.1.81 from EC); kappa-carrageenase (3.2.1.83 from EC); endo-beta-1,3-glucanase (3.2.1.39 from EC); endo-beta-1,3-1,4-glucanase (3.2.1.6 from EC); endo-beta-galactosidase (3.2.1.103 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DGT_A 2CL2_A 2WLQ_A 2WNE_A 2W39_A 2W52_A 3ILN_A 4DFS_A 1UMZ_A 1UN1_B ....
Probab=22.68 E-value=2.7e+02 Score=19.58 Aligned_cols=49 Identities=14% Similarity=0.273 Sum_probs=27.2
Q ss_pred CCCCEEEEEEeCCCC-EEEEEEEEEcccccccccccEEEEEeecCCCCeEEEEEEECCCC
Q 043145 49 KRDDGDFSCEVDPMG-KVLIKGVTTTGEKSVYKYSQVFEMQTQNLCPPGHFSISFQLPGP 107 (134)
Q Consensus 49 ~~edI~V~v~~~~~~-~L~I~g~~~~~~~~~~~~~~~~~~e~~~~~~~g~F~r~i~LP~~ 107 (134)
+++++.+ .++ .|.|+..+..... .....+.-.... .+|.|+-.+++|..
T Consensus 10 ~~~nv~~-----~~g~~L~L~~~~~~~~~--~~sg~i~s~~~~---~yG~~ear~k~~~~ 59 (185)
T PF00722_consen 10 SPDNVTV-----EDGGNLVLRADKEPGKP--YTSGEIQSKFSF---KYGRFEARIKAPPG 59 (185)
T ss_dssp TCCGEEE-----ETTSEEEEEEEEEETEE--EEEEEEEESSEB---SSEEEEEEEECSCS
T ss_pred CCCcEEE-----cCCCEEEEEEEecccCc--eEeCEEEEccee---ECcEEEEEEEecCC
Confidence 4566666 555 9999988754221 111111111111 28999999997753
No 107
>PRK01379 cyaY frataxin-like protein; Provisional
Probab=21.69 E-value=85 Score=21.17 Aligned_cols=16 Identities=13% Similarity=-0.026 Sum_probs=12.0
Q ss_pred ceEEEeCCCCEEEEEEe
Q 043145 112 QFSGNFGIDGILEGIVM 128 (134)
Q Consensus 112 ~i~A~~~~nGvL~I~lP 128 (134)
.+.+.+ .+|||+|+.+
T Consensus 29 d~D~e~-~~gVLtl~~~ 44 (103)
T PRK01379 29 SIDVDL-QGDILNLDTD 44 (103)
T ss_pred ceeeec-cCCEEEEEeC
Confidence 366778 5999998854
No 108
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=21.52 E-value=2.1e+02 Score=25.40 Aligned_cols=44 Identities=14% Similarity=0.198 Sum_probs=30.6
Q ss_pred eeeEEEeC------CEEEEEEEcCCCCC-----CCEEEEEEeCCCCEEEEEEEEE
Q 043145 29 LVDIGECE------DSYMFRVALPGVKR-----DDGDFSCEVDPMGKVLIKGVTT 72 (134)
Q Consensus 29 ~~di~e~~------~~~~i~~~lPGv~~-----edI~V~v~~~~~~~L~I~g~~~ 72 (134)
.+.|++.+ +.++-.+.|.|+.+ ..|+|+++++.+|.|.|++.-.
T Consensus 457 ~i~i~qGe~~~~~~n~~lg~~~l~~ip~~~~G~~~I~Vtf~iD~nGiL~V~a~d~ 511 (657)
T PTZ00186 457 GIKVFQGEREMAADNQMMGQFDLVGIPPAPRGVPQIEVTFDIDANGICHVTAKDK 511 (657)
T ss_pred EEEEEEecccccccccccceEEEcCCCCCCCCCCcEEEEEEEcCCCEEEEEEEEc
Confidence 45677743 23444666666643 3688888999999999998743
No 109
>PF11033 ComJ: Competence protein J (ComJ); InterPro: IPR020354 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. The proteins in this entry play a role in the competence of cells to be transformed. They inhibit the activity of the DNA-entry nuclease. DNA-entry nuclease inhibitor is a subunit of a 75 kDa protein complex, which governs binding and entry of donor DNA. The complex is a tetramer of two subunits of the DNA-entry nuclease and two subunits of a competence-specific protein ComJ. Only the complex is able to bind ds- and ss-DNA []. It is found in the plasma membrane.
Probab=21.00 E-value=3.1e+02 Score=19.25 Aligned_cols=33 Identities=15% Similarity=0.061 Sum_probs=21.9
Q ss_pred eEEEEEEECCCCCccCc--eEEEeCCCCEEEEEEeec
Q 043145 96 GHFSISFQLPGPVNPEQ--FSGNFGIDGILEGIVMKQ 130 (134)
Q Consensus 96 g~F~r~i~LP~~v~~~~--i~A~~~~nGvL~I~lPK~ 130 (134)
....|.+++|..|..+. |++-+ ++ -|.+-+||-
T Consensus 63 ~~~~R~i~VPF~V~~d~i~V~Svl-s~-~~~~~ip~G 97 (125)
T PF11033_consen 63 EDAQRTISVPFTVKGDGIEVSSVL-SE-KLSFDIPKG 97 (125)
T ss_pred ccceEEEEeeEEEcCCCEEEEEee-cC-cEEEecCCC
Confidence 45678888888876554 45667 45 477777753
Done!