RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 043145
(134 letters)
>gnl|CDD|107221 cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of
alpha-crystallin-type small(s) heat shock proteins
(Hsps). sHsps are small stress induced proteins with
monomeric masses between 12 -43 kDa, whose common
feature is the Alpha-crystallin domain (ACD). sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps.
Length = 88
Score = 57.9 bits (141), Expect = 3e-12
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 11/99 (11%)
Query: 31 DIGECEDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQTQ 90
D+ E +D+Y+ LPG K++ D EV+ G + I G E+ Y +
Sbjct: 1 DVYETDDAYVVEADLPGFKKE--DIKVEVED-GVLTISGEREEEEEEEENY-------LR 50
Query: 91 NLCPPGHFSISFQLPGPVNPEQFSGNFGIDGILEGIVMK 129
G FS SF+LP V+P++ + +G+L + K
Sbjct: 51 RERSYGSFSRSFRLPEDVDPDKIKASLE-NGVLTITLPK 88
>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the
alpha-crystallin domain (ACD) of alpha-crystallin-type
small heat shock proteins (sHsps) and a similar domain
found in p23-like proteins. sHsps are small stress
induced proteins with monomeric masses between 12 -43
kDa, whose common feature is this ACD. sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps. p23 is a cochaperone of the Hsp90 chaperoning
pathway. It binds Hsp90 and participates in the folding
of a number of Hsp90 clients including the progesterone
receptor. p23 also has a passive chaperoning activity.
p23 in addition may act as the cytosolic prostaglandin
E2 synthase. Included in this family is the p23-like
C-terminal CHORD-SGT1 (CS) domain of suppressor of G2
allele of Skp1 (Sgt1) and the p23-like domains of human
butyrate-induced transcript 1 (hB-ind1), NUD (nuclear
distribution) C, Melusin, and NAD(P)H cytochrome b5
(NCB5) oxidoreductase (OR).
Length = 80
Score = 48.0 bits (115), Expect = 2e-08
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 19/98 (19%)
Query: 32 IGECEDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQTQN 91
+ +D + V LPGVK++D EV+ + I G E+ Y
Sbjct: 1 WYQTDDEVVVTVDLPGVKKED--IKVEVED-NVLTISGKREEEEERERSY---------- 47
Query: 92 LCPPGHFSISFQLPGPVNPEQFSGNFGIDGILEGIVMK 129
G F SF+LP V+PE+ + +G+LE I +
Sbjct: 48 ----GEFERSFELPEDVDPEKSKASLE-NGVLE-ITLP 79
>gnl|CDD|215655 pfam00011, HSP20, Hsp20/alpha crystallin family.
Length = 101
Score = 37.6 bits (88), Expect = 2e-04
Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 12/93 (12%)
Query: 31 DIGECEDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQTQ 90
DI E +D+++ ++ +PG K ++ E + +VL+KG E+ +
Sbjct: 1 DIKEDKDAFVVKLDVPGFKPEELKVKVEDN---RVLVKGKHEKEEEDDHGLRSERSY--- 54
Query: 91 NLCPPGHFSISFQLPGPVNPEQFSGNFGIDGIL 123
FS F LP +P++ + DG+L
Sbjct: 55 -----RSFSRKFVLPENADPDKVKASL-KDGVL 81
>gnl|CDD|223149 COG0071, IbpA, Molecular chaperone (small heat shock protein)
[Posttranslational modification, protein turnover,
chaperones].
Length = 146
Score = 33.9 bits (78), Expect = 0.009
Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 16/98 (16%)
Query: 30 VDIGECEDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKGV---TTTGEKSVYKYSQVFE 86
VDI E +D Y LPGV ++ D V+ + I+G E+ Y +
Sbjct: 43 VDIEETDDEYRITAELPGVDKE--DIEITVEG-NTLTIRGEREEEEEEEEEGYLRRERAY 99
Query: 87 MQTQNLCPPGHFSISFQLPGPVNPEQFSGNFGIDGILE 124
G F +F+LP V+PE + +G+L
Sbjct: 100 ---------GEFERTFRLPEKVDPEVIKAKYK-NGLLT 127
>gnl|CDD|107228 cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing
an alpha crystallin domain (ACD) similar to
Lactobacillus plantarum (Lp) small heat shock proteins
(sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are
molecular chaperones that suppress protein aggregation
and protect against cell stress, and are generally
active as large oligomers consisting of multiple
subunits. Transcription of the genes encoding Lp HSP
18.5, 18.55 and 19.3 is regulated by a variety of
stresses including heat, cold and ethanol. Early
growing L. plantarum cells contain elevated levels of
these mRNAs which rapidly fall of as the cells enter
stationary phase. Also belonging to this group is
Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis
(syn. Leuconostoc oenos) (Oo) HSP18. Transcription of
the gene encoding BbHSP20 is strongly induced following
heat or osmotic shock, and that of the gene encoding
OoHSP18 following heat, ethanol or acid shock. OoHSP18
is peripherally associated with the cytoplasmic
membrane.
Length = 93
Score = 28.6 bits (65), Expect = 0.41
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 30 VDIGECEDSYMFRVALPGVKRDD 52
DI E +D Y+ LPG K++D
Sbjct: 3 TDIKETDDEYIVEADLPGFKKED 25
>gnl|CDD|107229 cd06472, ACD_ScHsp26_like, Alpha crystallin domain (ACD) found in
Saccharomyces cerevisiae (Sc) small heat shock protein
(Hsp)26 and similar proteins. sHsps are molecular
chaperones that suppress protein aggregation and
protect against cell stress, and are generally active
as large oligomers consisting of multiple subunits.
ScHsp26 is temperature-regulated, it switches from an
inactive to a chaperone-active form upon elevation in
temperature. It associates into large 24-mers storage
forms which upon heat shock disassociate into dimers.
These dimers initiate the interaction with non-native
substrate proteins and re-assemble into large globular
assemblies having one monomer of substrate bound per
dimer. This group also contains Arabidopsis thaliana
(Ath) Hsp15.7, a peroxisomal matrix protein which can
complement the morphological phenotype of S. cerevisiae
mutants deficient in Hsps26. AthHsp15.7 is minimally
expressed under normal conditions and is strongly
induced by heat and oxidative stress. Also belonging to
this group is wheat HSP16.9 which differs in quaternary
structure from the shell-type particles of ScHsp26, it
assembles as a dodecameric double disc, with each disc
organized as a trimer of dimers.
Length = 92
Score = 28.0 bits (63), Expect = 0.67
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 30 VDIGECEDSYMFRVALPGVKRDD 52
VD E ++++F+ +PGVK++D
Sbjct: 2 VDWKETPEAHVFKADVPGVKKED 24
>gnl|CDD|185102 PRK15180, PRK15180, Vi polysaccharide biosynthesis protein TviD;
Provisional.
Length = 831
Score = 28.5 bits (63), Expect = 1.3
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 11 GFSVTGSAATGKVGPVVGLVDIGECEDSYMFRVALPGVKRDDGDFSCEVD 60
GF+ T S A ++ ++GL+DI E ++FR P V + D D
Sbjct: 42 GFTHTSSEALQQIRFILGLIDIPEKVRPFIFR---PNVNYSNTDVHSRSD 88
>gnl|CDD|223573 COG0499, SAM1, S-adenosylhomocysteine hydrolase [Coenzyme
metabolism].
Length = 420
Score = 28.0 bits (63), Expect = 1.6
Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 58 EVDPMGKVLIKG---VTTTGEKSVYKYSQVFEMQTQN-LCPPGHFSISFQLPG 106
V M + G VT TG K V + +M+ L GHF + + G
Sbjct: 254 RVMTMEEAAKTGDIFVTATGNKDVIRKEHFEKMKDGAILANAGHFDVEIDVAG 306
>gnl|CDD|217990 pfam04257, Exonuc_V_gamma, Exodeoxyribonuclease V, gamma subunit.
The Exodeoxyribonuclease V enzyme is a multi-subunit
enzyme comprised of the proteins RecB, RecC (this
family) and RecD. This enzyme plays an important role in
homologous genetic recombination, repair of double
strand DNA breaks resistance to UV irradiation and
chemical DNA-damage. The enzyme (EC:3.1.11.5) catalyzes
ssDNA or dsDNA-dependent ATP hydrolysis, hydrolysis of
ssDNA or dsDNA and unwinding of dsDNA. This family
consists of two AAA domains.
Length = 756
Score = 28.0 bits (63), Expect = 2.0
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 101 SFQLPGPVNPEQFSGNFGIDGILEGIVMKQKHT 133
LPG EQ + FG+D +L G M ++
Sbjct: 439 KLGLPGD---EQNTWRFGLDRLLLGYAMPDENG 468
>gnl|CDD|185659 PTZ00481, PTZ00481, Membrane attack complex/ Perforin (MACPF)
Superfamily; Provisional.
Length = 524
Score = 27.1 bits (60), Expect = 3.5
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 79 YKYSQVFEMQTQNLCPPG---HFSISFQLPGPVN 109
Y S+ F+M+ ++CPPG ++S S GP +
Sbjct: 394 YSISRQFQMKAASVCPPGLDFNYSKSRCSSGPFH 427
>gnl|CDD|236430 PRK09249, PRK09249, coproporphyrinogen III oxidase; Provisional.
Length = 453
Score = 27.0 bits (61), Expect = 3.7
Identities = 5/11 (45%), Positives = 7/11 (63%)
Query: 51 DDGDFSCEVDP 61
D + S E+DP
Sbjct: 136 PDAEISIEIDP 146
>gnl|CDD|232833 TIGR00118, acolac_lg, acetolactate synthase, large subunit,
biosynthetic type. Two groups of proteins form
acetolactate from two molecules of pyruvate. The type of
acetolactate synthase described in this model also
catalyzes the formation of acetohydroxybutyrate from
pyruvate and 2-oxobutyrate, an early step in the
branched chain amino acid biosynthesis; it is therefore
also termed acetohydroxyacid synthase. In bacteria, this
catalytic chain is associated with a smaller regulatory
chain in an alpha2/beta2 heterotetramer. Acetolactate
synthase is a thiamine pyrophosphate enzyme. In this
type, FAD and Mg++ are also found. Several isozymes of
this enzyme are found in E. coli K12, one of which
contains a frameshift in the large subunit gene and is
not expressed [Amino acid biosynthesis, Pyruvate
family].
Length = 558
Score = 27.0 bits (60), Expect = 3.7
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 11/54 (20%)
Query: 2 AEITAATKTGFSVTGSAATGKVGPVVGLVDI------GECEDSYMFRVALPGVK 49
+I K F + A TG+ GPV LVD+ E E Y +V LPG +
Sbjct: 133 EDIPRIIKEAFHI---ATTGRPGPV--LVDLPKDVTTAEIEYPYPEKVNLPGYR 181
>gnl|CDD|217623 pfam03576, Peptidase_S58, Peptidase family S58.
Length = 322
Score = 26.3 bits (59), Expect = 6.0
Identities = 10/38 (26%), Positives = 13/38 (34%), Gaps = 5/38 (13%)
Query: 16 GSAATGKVGPVVGLVDIGECEDSYMFRVALPGVKRDDG 53
G V PVV E D + + VKR+
Sbjct: 95 GGRVGSTVNPVVP-----ETNDGILNDIRGGHVKREHV 127
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.137 0.411
Gapped
Lambda K H
0.267 0.0775 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,662,580
Number of extensions: 570599
Number of successful extensions: 422
Number of sequences better than 10.0: 1
Number of HSP's gapped: 418
Number of HSP's successfully gapped: 16
Length of query: 134
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 48
Effective length of database: 7,123,158
Effective search space: 341911584
Effective search space used: 341911584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.5 bits)