RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 043145
(134 letters)
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A
{Methanocaldococcus jannaschii} PDB: 1shs_A
Length = 161
Score = 48.2 bits (115), Expect = 5e-08
Identities = 22/99 (22%), Positives = 36/99 (36%), Gaps = 17/99 (17%)
Query: 30 VDIGECEDSYMFRVALPGVKRDDGDFSCEVDPMGKVL-IKG---VTTTGEKSVYKYSQVF 85
+ I E + LPGV ++D ++ +G L I+ E YS++
Sbjct: 59 ISIIEGDQHIKVIAWLPGVNKED----IILNAVGDTLEIRAKRSPLMITESERIIYSEIP 114
Query: 86 EMQTQNLCPPGHFSISFQLPGPVNPEQFSGNFGIDGILE 124
E + +LP V E S F +G+L
Sbjct: 115 EE--------EEIYRTIKLPATVKEENASAKFE-NGVLS 144
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Length = 123
Score = 46.8 bits (112), Expect = 6e-08
Identities = 17/96 (17%), Positives = 33/96 (34%), Gaps = 14/96 (14%)
Query: 30 VDIGECEDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQT 89
VD+ E + L G ++ V +++I+ E V +Q
Sbjct: 27 VDMYEEGGYLVVVADLAGFNKE--KIKARVSGQNELIIEAEREITEPGVKYLTQRP---- 80
Query: 90 QNLCPPGHFSISFQLPGPVNPE-QFSGNFGIDGILE 124
+ +LP V + + SG + +G+L
Sbjct: 81 ------KYVRKVIRLPYNVAKDAEISGKYE-NGVLT 109
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high
resolution, stress response, chaperone; 1.64A
{Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Length = 100
Score = 45.9 bits (110), Expect = 8e-08
Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 12/96 (12%)
Query: 30 VDIGECEDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKG-VTTTGEKSVYKYSQVFEMQ 88
VDI E + ++ LPG+ ++D G + I+G + ++S++ E +
Sbjct: 7 VDIKEEVNHFVLYADLPGIDPS--QIEVQMDK-GILSIRGERKSESSTETERFSRI-ERR 62
Query: 89 TQNLCPPGHFSISFQLPGPVNPEQFSGNFGIDGILE 124
G F F LP + + + +G+LE
Sbjct: 63 Y------GSFHRRFALPDSADADGITAAGR-NGVLE 91
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone,
alpha-crystallin; 2.70A {Triticum aestivum} SCOP:
b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Length = 151
Score = 44.2 bits (105), Expect = 9e-07
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 13/97 (13%)
Query: 30 VDIGECEDSYMFRVALPGVKRDDGDFSCEVDPMGKVL-IKG-VTTTGEKSVYKYSQVFEM 87
+D E ++++F+ LPGVK++ + EV+ G VL + G T E K+ +V E
Sbjct: 46 MDWKETPEAHVFKADLPGVKKE--EVKVEVED-GNVLVVSGERTKEKEDKNDKWHRV-ER 101
Query: 88 QTQNLCPPGHFSISFQLPGPVNPEQFSGNFGIDGILE 124
+ G F F+L E+ +G+L
Sbjct: 102 SS------GKFVRRFRLLEDAKVEEVKAGLE-NGVLT 131
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress
response; 1.12A {Rattus norvegicus}
Length = 101
Score = 38.2 bits (89), Expect = 7e-05
Identities = 10/96 (10%), Positives = 27/96 (28%), Gaps = 16/96 (16%)
Query: 28 GLVDIGECEDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEM 87
+ + + + + ++ S +V V + ++
Sbjct: 2 AMAQVPTDPGYFSVLLDVKHFSPEE--ISVKVVG-DHVEVHARHEERPDEHGFIAR---- 54
Query: 88 QTQNLCPPGHFSISFQLPGPVNPEQFSGNFGIDGIL 123
F ++LP V+P + +G+L
Sbjct: 55 ---------EFHRRYRLPPGVDPAAVTSALSPEGVL 81
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
intermolecular INTE chaperone, SHSP, human, small
heat-shock protein, cataract; NMR {Homo sapiens} PDB:
2ygd_A
Length = 175
Score = 37.2 bits (86), Expect = 4e-04
Identities = 14/96 (14%), Positives = 35/96 (36%), Gaps = 16/96 (16%)
Query: 28 GLVDIGECEDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEM 87
GL ++ +D + + + ++ +V + + G + E
Sbjct: 64 GLSEMRLEKDRFSVNLDVKHFSPEE--LKVKVLG-DVIEVHG-------------KHEER 107
Query: 88 QTQNLCPPGHFSISFQLPGPVNPEQFSGNFGIDGIL 123
Q ++ F +++P V+P + + DG+L
Sbjct: 108 QDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVL 143
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity,
protein aggregation, CRYS eye lens protein, chaperone;
1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Length = 106
Score = 36.0 bits (83), Expect = 6e-04
Identities = 16/96 (16%), Positives = 32/96 (33%), Gaps = 16/96 (16%)
Query: 28 GLVDIGECEDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEM 87
G+ ++ D ++ + + +D + +V V I G + S
Sbjct: 3 GISEVRSDRDKFVIFLDVKHFSPED--LTVKVQE-DFVEIHGKHNERQDDHGYIS----- 54
Query: 88 QTQNLCPPGHFSISFQLPGPVNPEQFSGNFGIDGIL 123
F ++LP V+ S + DG+L
Sbjct: 55 --------REFHRRYRLPSNVDQSALSCSLSADGML 82
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone,
charcot-marie-tooth DISE neuronopathy, IG-like fold,
stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Length = 85
Score = 31.9 bits (73), Expect = 0.014
Identities = 16/88 (18%), Positives = 30/88 (34%), Gaps = 16/88 (18%)
Query: 36 EDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQTQNLCPP 95
D + + + D+ + + G V I G + Q ++
Sbjct: 6 ADRWRVSLDVNHFAPDE--LTVKTKD-GVVEITG-------------KHAARQDEHGYIS 49
Query: 96 GHFSISFQLPGPVNPEQFSGNFGIDGIL 123
F+ + LP V+P Q S + +G L
Sbjct: 50 RCFTRKYTLPPGVDPTQVSSSLSPEGTL 77
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone,
stress protein, eye LEN protein, cataract; HET: MSE;
2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Length = 90
Score = 30.5 bits (69), Expect = 0.057
Identities = 11/88 (12%), Positives = 29/88 (32%), Gaps = 16/88 (18%)
Query: 36 EDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQTQNLCPP 95
+D + + + ++ +V + + G + S+
Sbjct: 5 KDRFSVNLDVKHFSPEE--LKVKVLG-DVIEVHGKHEERQDEHGFISR------------ 49
Query: 96 GHFSISFQLPGPVNPEQFSGNFGIDGIL 123
F +++P V+P + + DG+L
Sbjct: 50 -EFHRKYRIPADVDPLTITSSMSSDGVL 76
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone;
2.5A {Taenia saginata}
Length = 314
Score = 31.3 bits (70), Expect = 0.068
Identities = 16/95 (16%), Positives = 27/95 (28%), Gaps = 15/95 (15%)
Query: 30 VDIGECEDSYMFRVAL-PGVKRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQ 88
V + + + P D KV + GVT EK+
Sbjct: 226 VTAEDGSKKIHLELKVDPHFAPKD--VKVWAKG-NKVYVHGVTGKEEKTENASHSEH--- 279
Query: 89 TQNLCPPGHFSISFQLPGPVNPEQFSGNFGIDGIL 123
F +F P V+ + +DG++
Sbjct: 280 -------REFYKAFVTPEVVDASKTQAEI-VDGLM 306
Score = 31.0 bits (69), Expect = 0.084
Identities = 6/27 (22%), Positives = 8/27 (29%)
Query: 97 HFSISFQLPGPVNPEQFSGNFGIDGIL 123
S LP V+ D +L
Sbjct: 155 SVGRSIPLPPSVDRNHIQATITTDDVL 181
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.1 bits (62), Expect = 1.2
Identities = 17/130 (13%), Positives = 31/130 (23%), Gaps = 52/130 (40%)
Query: 1 WAEITAATKTG----FSVTGSAATGKVGPVVGL--------VDIGECEDSYMFRVALPGV 48
W + + F + G + P L ++ E S M ++ +
Sbjct: 289 WESFFVSVRKAITVLFFI-GVRCY-EAYPNTSLPPSILEDSLENNEGVPSPMLSIS--NL 344
Query: 49 KRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQTQNLCPPGHFSISFQLPGPV 108
++ + V T N P + L V
Sbjct: 345 TQEQ-------------VQDYVNKT-----------------NSHLPAGKQVEISL---V 371
Query: 109 N-PEQF--SG 115
N + SG
Sbjct: 372 NGAKNLVVSG 381
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase,
herbicide, sulfonylurea, thiamin diphosphate, FAD,
inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A
{Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5
c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Length = 677
Score = 26.1 bits (58), Expect = 4.1
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 8/36 (22%)
Query: 18 AATGKVGPVVGLVDI------GECEDSYMFRVALPG 47
A +G+ GPV LVD+ + + LP
Sbjct: 227 ATSGRPGPV--LVDLPKDVTAAILRNPIPTKTTLPS 260
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase,
herbicide, sulfonylurea, thiamin diphosphate, FAD,
inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis
thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A*
1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Length = 590
Score = 25.2 bits (56), Expect = 9.5
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 8/38 (21%)
Query: 18 AATGKVGPVVGLVDI------GECEDSYMFRVALPGVK 49
A +G+ GPV LVD+ ++ + LPG
Sbjct: 157 ATSGRPGPV--LVDVPKDIQQQLAIPNWEQAMRLPGYM 192
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.137 0.411
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,071,158
Number of extensions: 114672
Number of successful extensions: 194
Number of sequences better than 10.0: 1
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 17
Length of query: 134
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 51
Effective length of database: 4,384,350
Effective search space: 223601850
Effective search space used: 223601850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (23.9 bits)