RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 043145
         (134 letters)



>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 115

 Score = 51.6 bits (123), Expect = 4e-10
 Identities = 21/123 (17%), Positives = 36/123 (29%), Gaps = 17/123 (13%)

Query: 10  TGFSVTGSAATGKVGPVVGLVDIGECEDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKG 69
           TG  ++G        P+     I E +        LPGV ++  D           +   
Sbjct: 1   TGIQISGKGFM----PI----SIIEGDQHIKVIAWLPGVNKE--DIILNAVGDTLEIRAK 50

Query: 70  VTTTGEKSVYKYSQVFEMQTQNLCPPGHFSISFQLPGPVNPEQFSGNFGIDGILEGIVMK 129
            +        +                    + +LP  V  E  S  F  +G+L  I+ K
Sbjct: 51  RSPLMITESERIIYSEI------PEEEEIYRTIKLPATVKEENASAKF-ENGVLSVILPK 103

Query: 130 QKH 132
            + 
Sbjct: 104 AES 106


>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum
           aestivum) [TaxId: 4565]}
          Length = 150

 Score = 43.2 bits (101), Expect = 1e-06
 Identities = 20/102 (19%), Positives = 42/102 (41%), Gaps = 9/102 (8%)

Query: 30  VDIGECEDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQT 89
           +D  E  ++++F+  LPGVK++  +   EV+    +++ G      +   +     +   
Sbjct: 45  MDWKETPEAHVFKADLPGVKKE--EVKVEVEDGNVLVVSG------ERTKEKEDKNDKWH 96

Query: 90  QNLCPPGHFSISFQLPGPVNPEQFSGNFGIDGILEGIVMKQK 131
           +     G F   F+L      E+       +G+L   V K +
Sbjct: 97  RVERSSGKFVRRFRLLEDAKVEEVKAGL-ENGVLTVTVPKAE 137


>d1s68a_ d.142.2.4 (A:) RNA ligase 2, N-terminal domain
           {Bacteriophage T4 [TaxId: 10665]}
          Length = 233

 Score = 25.9 bits (56), Expect = 1.7
 Identities = 5/22 (22%), Positives = 7/22 (31%)

Query: 109 NPEQFSGNFGIDGILEGIVMKQ 130
                +   G     EG V+K 
Sbjct: 189 KCVWNAEAKGEVFTAEGYVLKP 210


>d1d0gr1 g.24.1.1 (R:21-61) Death receptor-5 (dr5) fragment {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 41

 Score = 22.7 bits (48), Expect = 4.9
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 89 TQNLCPPGH 97
          ++ LCPPGH
Sbjct: 4  SEGLCPPGH 12


>d2heyr1 g.24.1.1 (R:83-142) Tumor necrosis factor receptor
          superfamily member 4,  OX40L receptor {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 60

 Score = 23.0 bits (49), Expect = 6.7
 Identities = 7/7 (100%), Positives = 7/7 (100%)

Query: 93 CPPGHFS 99
          CPPGHFS
Sbjct: 46 CPPGHFS 52


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.137    0.411 

Gapped
Lambda     K      H
   0.267   0.0676    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 501,731
Number of extensions: 21675
Number of successful extensions: 51
Number of sequences better than 10.0: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 8
Length of query: 134
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 58
Effective length of database: 1,364,116
Effective search space: 79118728
Effective search space used: 79118728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (22.4 bits)