BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043147
(443 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FGO|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q495a Mutant
Length = 839
Score = 374 bits (960), Expect = e-104, Method: Compositional matrix adjust.
Identities = 216/526 (41%), Positives = 285/526 (54%), Gaps = 118/526 (22%)
Query: 25 VFNDLGNPDRGSEFVRPTLGGEQR-PYPRRCRTGRLPTDTDMHAESRIEKPLPMYVPRDE 83
V+NDLGNPD+ + RP LGG PYPRR RTGR PT TD + E + E YVPRDE
Sbjct: 188 VYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEV---FYVPRDE 244
Query: 84 QFEESK-HDAFSAGR------LKAALRNLIPLLKASISAHN-RDFRDKF----------- 124
K DA G ++ A + L I H+ +D D +
Sbjct: 245 NLGHLKSKDALEIGTKSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLPRDVI 304
Query: 125 ----------------------------------AWLQDDEFACQALAGVNPVTIDGLQA 150
AW+ D+EFA + +AGVNP I GL+
Sbjct: 305 STIIPLPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEE 364
Query: 151 FPPVSNLDPAIYGPQESALKEEHIIGQLDGMSVQQVLKENKLYVLDCHHIYLPFLDKINA 210
FPP SNLDPAIYG Q S + + + LDG ++ + L +L++LD H I++P++ +IN
Sbjct: 365 FPPKSNLDPAIYGDQSSKITADSL--DLDGYTMDEALGSRRLFMLDYHDIFMPYVRQINQ 422
Query: 211 LDGRKAYATRTIFFLNSLGPLKPIAIELSLPPSGPDQSAA-------------------- 250
L+ K YATRTI FL G LKP+AIELSLP S D SAA
Sbjct: 423 LNSAKTYATRTILFLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKEGVESTIWLLA 482
Query: 251 --HVCSNDAR--------VRTHACMEPFILTAHRQLSAMHPIYKLLDPHMRYTLEINALA 300
+V ND+ + THA MEPF++ HR LS +HPIYKLL PH R + INALA
Sbjct: 483 KAYVIVNDSCYHALMSHWLNTHAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALA 542
Query: 301 RKNLINADGVID-------------ASMFKSWRFDKEGLPADLIRRGIAVPDPTQPDGLK 347
R++LINA+G+I+ ++++K+W F + LPADLI+RG+A+ DP+ P G++
Sbjct: 543 RQSLINANGIIETTFLPSKYSVEMSSAVYKNWVFTDQALPADLIKRGVAIKDPSTPHGVR 602
Query: 348 LLIEDYPYAADGLLIWSAIEDWVRTY----------------LKSWHNESINVGHADLRQ 391
LLIEDYPYAADGL IW+AI+ WV+ Y L+ W E++ GH DL+
Sbjct: 603 LLIEDYPYAADGLEIWAAIKTWVQEYVPLYYARDDDVKNDSELQHWWKEAVEKGHGDLKD 662
Query: 392 ESWWPTLTNGDDLVFILNTIIWLASAQHAALNFGQCPYGGYVPNRP 437
+ WWP L +DLV + IIW+ASA HAA+NFGQ PYGG + NRP
Sbjct: 663 KPWWPKLQTLEDLVEVCLIIIWIASALHAAVNFGQYPYGGLIMNRP 708
>pdb|2SBL|B Chain B, The Three-Dimensional Structure Of An Arachidonic Acid 15-
Lipoxygenase
pdb|1F8N|A Chain A, Lipoxygenase-1 (Soybean) At 100k, New Refinement
pdb|1YGE|A Chain A, Lipoxygenase-1 (Soybean) At 100k
pdb|2SBL|A Chain A, The Three-Dimensional Structure Of An Arachidonic Acid 15-
Lipoxygenase
Length = 839
Score = 374 bits (959), Expect = e-104, Method: Compositional matrix adjust.
Identities = 216/526 (41%), Positives = 285/526 (54%), Gaps = 118/526 (22%)
Query: 25 VFNDLGNPDRGSEFVRPTLGGEQR-PYPRRCRTGRLPTDTDMHAESRIEKPLPMYVPRDE 83
V+NDLGNPD+ + RP LGG PYPRR RTGR PT TD + E + E YVPRDE
Sbjct: 188 VYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEV---FYVPRDE 244
Query: 84 QFEESK-HDAFSAGR------LKAALRNLIPLLKASISAHN-RDFRDKF----------- 124
K DA G ++ A + L I H+ +D D +
Sbjct: 245 NLGHLKSKDALEIGTKSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLPRDVI 304
Query: 125 ----------------------------------AWLQDDEFACQALAGVNPVTIDGLQA 150
AW+ D+EFA + +AGVNP I GL+
Sbjct: 305 STIIPLPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEE 364
Query: 151 FPPVSNLDPAIYGPQESALKEEHIIGQLDGMSVQQVLKENKLYVLDCHHIYLPFLDKINA 210
FPP SNLDPAIYG Q S + + + LDG ++ + L +L++LD H I++P++ +IN
Sbjct: 365 FPPKSNLDPAIYGDQSSKITADSL--DLDGYTMDEALGSRRLFMLDYHDIFMPYVRQINQ 422
Query: 211 LDGRKAYATRTIFFLNSLGPLKPIAIELSLPPSGPDQSAA-------------------- 250
L+ K YATRTI FL G LKP+AIELSLP S D SAA
Sbjct: 423 LNSAKTYATRTILFLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKEGVESTIWLLA 482
Query: 251 --HVCSNDAR--------VRTHACMEPFILTAHRQLSAMHPIYKLLDPHMRYTLEINALA 300
+V ND+ + THA MEPF++ HR LS +HPIYKLL PH R + INALA
Sbjct: 483 KAYVIVNDSCYHQLMSHWLNTHAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALA 542
Query: 301 RKNLINADGVID-------------ASMFKSWRFDKEGLPADLIRRGIAVPDPTQPDGLK 347
R++LINA+G+I+ ++++K+W F + LPADLI+RG+A+ DP+ P G++
Sbjct: 543 RQSLINANGIIETTFLPSKYSVEMSSAVYKNWVFTDQALPADLIKRGVAIKDPSTPHGVR 602
Query: 348 LLIEDYPYAADGLLIWSAIEDWVRTY----------------LKSWHNESINVGHADLRQ 391
LLIEDYPYAADGL IW+AI+ WV+ Y L+ W E++ GH DL+
Sbjct: 603 LLIEDYPYAADGLEIWAAIKTWVQEYVPLYYARDDDVKNDSELQHWWKEAVEKGHGDLKD 662
Query: 392 ESWWPTLTNGDDLVFILNTIIWLASAQHAALNFGQCPYGGYVPNRP 437
+ WWP L +DLV + IIW+ASA HAA+NFGQ PYGG + NRP
Sbjct: 663 KPWWPKLQTLEDLVEVCLIIIWIASALHAAVNFGQYPYGGLIMNRP 708
>pdb|3PZW|A Chain A, Soybean Lipoxygenase-1 - Re-Refinement
Length = 839
Score = 374 bits (959), Expect = e-104, Method: Compositional matrix adjust.
Identities = 216/526 (41%), Positives = 285/526 (54%), Gaps = 118/526 (22%)
Query: 25 VFNDLGNPDRGSEFVRPTLGGEQR-PYPRRCRTGRLPTDTDMHAESRIEKPLPMYVPRDE 83
V+NDLGNPD+ + RP LGG PYPRR RTGR PT TD + E + E YVPRDE
Sbjct: 188 VYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEV---FYVPRDE 244
Query: 84 QFEESK-HDAFSAGR------LKAALRNLIPLLKASISAHN-RDFRDKF----------- 124
K DA G ++ A + L I H+ +D D +
Sbjct: 245 NLGHLKSKDALEIGTKSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLPRDVI 304
Query: 125 ----------------------------------AWLQDDEFACQALAGVNPVTIDGLQA 150
AW+ D+EFA + +AGVNP I GL+
Sbjct: 305 STIIPLPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEE 364
Query: 151 FPPVSNLDPAIYGPQESALKEEHIIGQLDGMSVQQVLKENKLYVLDCHHIYLPFLDKINA 210
FPP SNLDPAIYG Q S + + + LDG ++ + L +L++LD H I++P++ +IN
Sbjct: 365 FPPKSNLDPAIYGDQSSKITADSL--DLDGYTMDEALGSRRLFMLDYHDIFMPYVRQINQ 422
Query: 211 LDGRKAYATRTIFFLNSLGPLKPIAIELSLPPSGPDQSAA-------------------- 250
L+ K YATRTI FL G LKP+AIELSLP S D SAA
Sbjct: 423 LNSAKTYATRTILFLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKEGVESTIWLLA 482
Query: 251 --HVCSNDAR--------VRTHACMEPFILTAHRQLSAMHPIYKLLDPHMRYTLEINALA 300
+V ND+ + THA MEPF++ HR LS +HPIYKLL PH R + INALA
Sbjct: 483 KAYVIVNDSCYHQLMSHWLNTHAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALA 542
Query: 301 RKNLINADGVID-------------ASMFKSWRFDKEGLPADLIRRGIAVPDPTQPDGLK 347
R++LINA+G+I+ ++++K+W F + LPADLI+RG+A+ DP+ P G++
Sbjct: 543 RQSLINANGIIETTFLPSKYSVEMSSAVYKNWVFTDQALPADLIKRGVAIKDPSTPHGVR 602
Query: 348 LLIEDYPYAADGLLIWSAIEDWVRTY----------------LKSWHNESINVGHADLRQ 391
LLIEDYPYAADGL IW+AI+ WV+ Y L+ W E++ GH DL+
Sbjct: 603 LLIEDYPYAADGLEIWAAIKTWVQEYVPLYYARDDDVKNDSELQHWWKEAVEKGHGDLKD 662
Query: 392 ESWWPTLTNGDDLVFILNTIIWLASAQHAALNFGQCPYGGYVPNRP 437
+ WWP L +DLV + IIW+ASA HAA+NFGQ PYGG + NRP
Sbjct: 663 KPWWPKLQTLEDLVEVCLIIIWIASALHAAVNFGQYPYGGLIMNRP 708
>pdb|1FGQ|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q495e Mutant
Length = 839
Score = 374 bits (959), Expect = e-104, Method: Compositional matrix adjust.
Identities = 216/526 (41%), Positives = 285/526 (54%), Gaps = 118/526 (22%)
Query: 25 VFNDLGNPDRGSEFVRPTLGGEQR-PYPRRCRTGRLPTDTDMHAESRIEKPLPMYVPRDE 83
V+NDLGNPD+ + RP LGG PYPRR RTGR PT TD + E + E YVPRDE
Sbjct: 188 VYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEV---FYVPRDE 244
Query: 84 QFEESK-HDAFSAGR------LKAALRNLIPLLKASISAHN-RDFRDKF----------- 124
K DA G ++ A + L I H+ +D D +
Sbjct: 245 NLGHLKSKDALEIGTKSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLPRDVI 304
Query: 125 ----------------------------------AWLQDDEFACQALAGVNPVTIDGLQA 150
AW+ D+EFA + +AGVNP I GL+
Sbjct: 305 STIIPLPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEE 364
Query: 151 FPPVSNLDPAIYGPQESALKEEHIIGQLDGMSVQQVLKENKLYVLDCHHIYLPFLDKINA 210
FPP SNLDPAIYG Q S + + + LDG ++ + L +L++LD H I++P++ +IN
Sbjct: 365 FPPKSNLDPAIYGDQSSKITADSL--DLDGYTMDEALGSRRLFMLDYHDIFMPYVRQINQ 422
Query: 211 LDGRKAYATRTIFFLNSLGPLKPIAIELSLPPSGPDQSAA-------------------- 250
L+ K YATRTI FL G LKP+AIELSLP S D SAA
Sbjct: 423 LNSAKTYATRTILFLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKEGVESTIWLLA 482
Query: 251 --HVCSNDAR--------VRTHACMEPFILTAHRQLSAMHPIYKLLDPHMRYTLEINALA 300
+V ND+ + THA MEPF++ HR LS +HPIYKLL PH R + INALA
Sbjct: 483 KAYVIVNDSCYHELMSHWLNTHAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALA 542
Query: 301 RKNLINADGVID-------------ASMFKSWRFDKEGLPADLIRRGIAVPDPTQPDGLK 347
R++LINA+G+I+ ++++K+W F + LPADLI+RG+A+ DP+ P G++
Sbjct: 543 RQSLINANGIIETTFLPSKYSVEMSSAVYKNWVFTDQALPADLIKRGVAIKDPSTPHGVR 602
Query: 348 LLIEDYPYAADGLLIWSAIEDWVRTY----------------LKSWHNESINVGHADLRQ 391
LLIEDYPYAADGL IW+AI+ WV+ Y L+ W E++ GH DL+
Sbjct: 603 LLIEDYPYAADGLEIWAAIKTWVQEYVPLYYARDDDVKNDSELQHWWKEAVEKGHGDLKD 662
Query: 392 ESWWPTLTNGDDLVFILNTIIWLASAQHAALNFGQCPYGGYVPNRP 437
+ WWP L +DLV + IIW+ASA HAA+NFGQ PYGG + NRP
Sbjct: 663 KPWWPKLQTLEDLVEVCLIIIWIASALHAAVNFGQYPYGGLIMNRP 708
>pdb|3BND|A Chain A, Lipoxygenase-1 (Soybean), I553v Mutant
Length = 839
Score = 373 bits (958), Expect = e-103, Method: Compositional matrix adjust.
Identities = 215/526 (40%), Positives = 285/526 (54%), Gaps = 118/526 (22%)
Query: 25 VFNDLGNPDRGSEFVRPTLGGEQR-PYPRRCRTGRLPTDTDMHAESRIEKPLPMYVPRDE 83
V+NDLGNPD+ + RP LGG PYPRR RTGR PT TD + E + E YVPRDE
Sbjct: 188 VYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEV---FYVPRDE 244
Query: 84 QFEESK-HDAFSAGR------LKAALRNLIPLLKASISAHN-RDFRDKF----------- 124
K DA G ++ A + L I H+ +D D +
Sbjct: 245 NLGHLKSKDALEIGTKSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLPRDVI 304
Query: 125 ----------------------------------AWLQDDEFACQALAGVNPVTIDGLQA 150
AW+ D+EFA + +AGVNP I GL+
Sbjct: 305 STIIPLPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEE 364
Query: 151 FPPVSNLDPAIYGPQESALKEEHIIGQLDGMSVQQVLKENKLYVLDCHHIYLPFLDKINA 210
FPP SNLDPAIYG Q S + + + LDG ++ + L +L++LD H I++P++ +IN
Sbjct: 365 FPPKSNLDPAIYGDQSSKITADSL--DLDGYTMDEALGSRRLFMLDYHDIFMPYVRQINQ 422
Query: 211 LDGRKAYATRTIFFLNSLGPLKPIAIELSLPPSGPDQSAA-------------------- 250
L+ K YATRTI FL G LKP+AIELSLP S D SAA
Sbjct: 423 LNSAKTYATRTILFLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKEGVESTIWLLA 482
Query: 251 --HVCSNDAR--------VRTHACMEPFILTAHRQLSAMHPIYKLLDPHMRYTLEINALA 300
+V ND+ + THA MEPF++ HR LS +HPIYKLL PH R + INALA
Sbjct: 483 KAYVIVNDSCYHQLMSHWLNTHAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALA 542
Query: 301 RKNLINADGVID-------------ASMFKSWRFDKEGLPADLIRRGIAVPDPTQPDGLK 347
R++LINA+G+++ ++++K+W F + LPADLI+RG+A+ DP+ P G++
Sbjct: 543 RQSLINANGIVETTFLPSKYSVEMSSAVYKNWVFTDQALPADLIKRGVAIKDPSTPHGVR 602
Query: 348 LLIEDYPYAADGLLIWSAIEDWVRTY----------------LKSWHNESINVGHADLRQ 391
LLIEDYPYAADGL IW+AI+ WV+ Y L+ W E++ GH DL+
Sbjct: 603 LLIEDYPYAADGLEIWAAIKTWVQEYVPLYYARDDDVKNDSELQHWWKEAVEKGHGDLKD 662
Query: 392 ESWWPTLTNGDDLVFILNTIIWLASAQHAALNFGQCPYGGYVPNRP 437
+ WWP L +DLV + IIW+ASA HAA+NFGQ PYGG + NRP
Sbjct: 663 KPWWPKLQTLEDLVEVCLIIIWIASALHAAVNFGQYPYGGLIMNRP 708
>pdb|1FGR|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q697e Mutant
Length = 839
Score = 372 bits (956), Expect = e-103, Method: Compositional matrix adjust.
Identities = 215/526 (40%), Positives = 285/526 (54%), Gaps = 118/526 (22%)
Query: 25 VFNDLGNPDRGSEFVRPTLGGEQR-PYPRRCRTGRLPTDTDMHAESRIEKPLPMYVPRDE 83
V+NDLGNPD+ + RP LGG PYPRR RTGR PT TD + E + E YVPRDE
Sbjct: 188 VYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEV---FYVPRDE 244
Query: 84 QFEESK-HDAFSAGR------LKAALRNLIPLLKASISAHN-RDFRDKF----------- 124
K DA G ++ A + L I H+ +D D +
Sbjct: 245 NLGHLKSKDALEIGTKSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLPRDVI 304
Query: 125 ----------------------------------AWLQDDEFACQALAGVNPVTIDGLQA 150
AW+ D+EFA + +AGVNP I GL+
Sbjct: 305 STIIPLPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEE 364
Query: 151 FPPVSNLDPAIYGPQESALKEEHIIGQLDGMSVQQVLKENKLYVLDCHHIYLPFLDKINA 210
FPP SNLDPAIYG Q S + + + LDG ++ + L +L++LD H I++P++ +IN
Sbjct: 365 FPPKSNLDPAIYGDQSSKITADSL--DLDGYTMDEALGSRRLFMLDYHDIFMPYVRQINQ 422
Query: 211 LDGRKAYATRTIFFLNSLGPLKPIAIELSLPPSGPDQSAA-------------------- 250
L+ K YATRTI FL G LKP+AIELSLP S D SAA
Sbjct: 423 LNSAKTYATRTILFLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKEGVESTIWLLA 482
Query: 251 --HVCSNDAR--------VRTHACMEPFILTAHRQLSAMHPIYKLLDPHMRYTLEINALA 300
+V ND+ + THA MEPF++ HR LS +HPIYKLL PH R + INALA
Sbjct: 483 KAYVIVNDSCYHQLMSHWLNTHAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALA 542
Query: 301 RKNLINADGVID-------------ASMFKSWRFDKEGLPADLIRRGIAVPDPTQPDGLK 347
R++LINA+G+I+ ++++K+W F + LPADLI+RG+A+ DP+ P G++
Sbjct: 543 RQSLINANGIIETTFLPSKYSVEMSSAVYKNWVFTDQALPADLIKRGVAIKDPSTPHGVR 602
Query: 348 LLIEDYPYAADGLLIWSAIEDWVRTY----------------LKSWHNESINVGHADLRQ 391
LLIEDYPYAADGL IW+AI+ WV+ Y L+ W E++ GH DL+
Sbjct: 603 LLIEDYPYAADGLEIWAAIKTWVQEYVPLYYARDDDVKNDSELQHWWKEAVEKGHGDLKD 662
Query: 392 ESWWPTLTNGDDLVFILNTIIWLASAQHAALNFGQCPYGGYVPNRP 437
+ WWP L +DLV + IIW+ASA HAA+NFG+ PYGG + NRP
Sbjct: 663 KPWWPKLQTLEDLVEVCLIIIWIASALHAAVNFGEYPYGGLIMNRP 708
>pdb|3BNB|A Chain A, Lipoxygenase-1 (Soybean) I553l Mutant
Length = 839
Score = 372 bits (955), Expect = e-103, Method: Compositional matrix adjust.
Identities = 215/526 (40%), Positives = 285/526 (54%), Gaps = 118/526 (22%)
Query: 25 VFNDLGNPDRGSEFVRPTLGGEQR-PYPRRCRTGRLPTDTDMHAESRIEKPLPMYVPRDE 83
V+NDLGNPD+ + RP LGG PYPRR RTGR PT TD + E + E YVPRDE
Sbjct: 188 VYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEV---FYVPRDE 244
Query: 84 QFEESK-HDAFSAGR------LKAALRNLIPLLKASISAHN-RDFRDKF----------- 124
K DA G ++ A + L I H+ +D D +
Sbjct: 245 NLGHLKSKDALEIGTKSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLPRDVI 304
Query: 125 ----------------------------------AWLQDDEFACQALAGVNPVTIDGLQA 150
AW+ D+EFA + +AGVNP I GL+
Sbjct: 305 STIIPLPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEE 364
Query: 151 FPPVSNLDPAIYGPQESALKEEHIIGQLDGMSVQQVLKENKLYVLDCHHIYLPFLDKINA 210
FPP SNLDPAIYG Q S + + + LDG ++ + L +L++LD H I++P++ +IN
Sbjct: 365 FPPKSNLDPAIYGDQSSKITADSL--DLDGYTMDEALGSRRLFMLDYHDIFMPYVRQINQ 422
Query: 211 LDGRKAYATRTIFFLNSLGPLKPIAIELSLPPSGPDQSAA-------------------- 250
L+ K YATRTI FL G LKP+AIELSLP S D SAA
Sbjct: 423 LNSAKTYATRTILFLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKEGVESTIWLLA 482
Query: 251 --HVCSNDAR--------VRTHACMEPFILTAHRQLSAMHPIYKLLDPHMRYTLEINALA 300
+V ND+ + THA MEPF++ HR LS +HPIYKLL PH R + INALA
Sbjct: 483 KAYVIVNDSCYHQLMSHWLNTHAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALA 542
Query: 301 RKNLINADGVID-------------ASMFKSWRFDKEGLPADLIRRGIAVPDPTQPDGLK 347
R++LINA+G+++ ++++K+W F + LPADLI+RG+A+ DP+ P G++
Sbjct: 543 RQSLINANGILETTFLPSKYSVEMSSAVYKNWVFTDQALPADLIKRGVAIKDPSTPHGVR 602
Query: 348 LLIEDYPYAADGLLIWSAIEDWVRTY----------------LKSWHNESINVGHADLRQ 391
LLIEDYPYAADGL IW+AI+ WV+ Y L+ W E++ GH DL+
Sbjct: 603 LLIEDYPYAADGLEIWAAIKTWVQEYVPLYYARDDDVKNDSELQHWWKEAVEKGHGDLKD 662
Query: 392 ESWWPTLTNGDDLVFILNTIIWLASAQHAALNFGQCPYGGYVPNRP 437
+ WWP L +DLV + IIW+ASA HAA+NFGQ PYGG + NRP
Sbjct: 663 KPWWPKLQTLEDLVEVCLIIIWIASALHAAVNFGQYPYGGLIMNRP 708
>pdb|1FGM|A Chain A, Lipoxygenase-1 (Soybean) At 100k, N694h Mutant
Length = 839
Score = 372 bits (955), Expect = e-103, Method: Compositional matrix adjust.
Identities = 215/526 (40%), Positives = 285/526 (54%), Gaps = 118/526 (22%)
Query: 25 VFNDLGNPDRGSEFVRPTLGGEQR-PYPRRCRTGRLPTDTDMHAESRIEKPLPMYVPRDE 83
V+NDLGNPD+ + RP LGG PYPRR RTGR PT TD + E + E YVPRDE
Sbjct: 188 VYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEV---FYVPRDE 244
Query: 84 QFEESK-HDAFSAGR------LKAALRNLIPLLKASISAHN-RDFRDKF----------- 124
K DA G ++ A + L I H+ +D D +
Sbjct: 245 NLGHLKSKDALEIGTKSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLPRDVI 304
Query: 125 ----------------------------------AWLQDDEFACQALAGVNPVTIDGLQA 150
AW+ D+EFA + +AGVNP I GL+
Sbjct: 305 STIIPLPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEE 364
Query: 151 FPPVSNLDPAIYGPQESALKEEHIIGQLDGMSVQQVLKENKLYVLDCHHIYLPFLDKINA 210
FPP SNLDPAIYG Q S + + + LDG ++ + L +L++LD H I++P++ +IN
Sbjct: 365 FPPKSNLDPAIYGDQSSKITADSL--DLDGYTMDEALGSRRLFMLDYHDIFMPYVRQINQ 422
Query: 211 LDGRKAYATRTIFFLNSLGPLKPIAIELSLPPSGPDQSAA-------------------- 250
L+ K YATRTI FL G LKP+AIELSLP S D SAA
Sbjct: 423 LNSAKTYATRTILFLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKEGVESTIWLLA 482
Query: 251 --HVCSNDAR--------VRTHACMEPFILTAHRQLSAMHPIYKLLDPHMRYTLEINALA 300
+V ND+ + THA MEPF++ HR LS +HPIYKLL PH R + INALA
Sbjct: 483 KAYVIVNDSCYHQLMSHWLNTHAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALA 542
Query: 301 RKNLINADGVID-------------ASMFKSWRFDKEGLPADLIRRGIAVPDPTQPDGLK 347
R++LINA+G+I+ ++++K+W F + LPADLI+RG+A+ DP+ P G++
Sbjct: 543 RQSLINANGIIETTFLPSKYSVEMSSAVYKNWVFTDQALPADLIKRGVAIKDPSTPHGVR 602
Query: 348 LLIEDYPYAADGLLIWSAIEDWVRTY----------------LKSWHNESINVGHADLRQ 391
LLIEDYPYAADGL IW+AI+ WV+ Y L+ W E++ GH DL+
Sbjct: 603 LLIEDYPYAADGLEIWAAIKTWVQEYVPLYYARDDDVKNDSELQHWWKEAVEKGHGDLKD 662
Query: 392 ESWWPTLTNGDDLVFILNTIIWLASAQHAALNFGQCPYGGYVPNRP 437
+ WWP L +DLV + IIW+ASA HAA++FGQ PYGG + NRP
Sbjct: 663 KPWWPKLQTLEDLVEVCLIIIWIASALHAAVHFGQYPYGGLIMNRP 708
>pdb|1Y4K|A Chain A, Lipoxygenase-1 (Soybean) At 100k, N694g Mutant
Length = 839
Score = 372 bits (955), Expect = e-103, Method: Compositional matrix adjust.
Identities = 215/526 (40%), Positives = 284/526 (53%), Gaps = 118/526 (22%)
Query: 25 VFNDLGNPDRGSEFVRPTLGGEQR-PYPRRCRTGRLPTDTDMHAESRIEKPLPMYVPRDE 83
V+NDLGNPD+ + RP LGG PYPRR RTGR PT TD + E + E YVPRDE
Sbjct: 188 VYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEV---FYVPRDE 244
Query: 84 QFEESK-HDAFSAGR------LKAALRNLIPLLKASISAHN-RDFRDKF----------- 124
K DA G ++ A + L I H+ +D D +
Sbjct: 245 NLGHLKSKDALEIGTKSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLPRDVI 304
Query: 125 ----------------------------------AWLQDDEFACQALAGVNPVTIDGLQA 150
AW+ D+EFA + +AGVNP I GL+
Sbjct: 305 STIIPLPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEE 364
Query: 151 FPPVSNLDPAIYGPQESALKEEHIIGQLDGMSVQQVLKENKLYVLDCHHIYLPFLDKINA 210
FPP SNLDPAIYG Q S + + + LDG ++ + L +L++LD H I++P++ +IN
Sbjct: 365 FPPKSNLDPAIYGDQSSKITADSL--DLDGYTMDEALGSRRLFMLDYHDIFMPYVRQINQ 422
Query: 211 LDGRKAYATRTIFFLNSLGPLKPIAIELSLPPSGPDQSAA-------------------- 250
L+ K YATRTI FL G LKP+AIELSLP S D SAA
Sbjct: 423 LNSAKTYATRTILFLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKEGVESTIWLLA 482
Query: 251 --HVCSNDAR--------VRTHACMEPFILTAHRQLSAMHPIYKLLDPHMRYTLEINALA 300
+V ND+ + THA MEPF++ HR LS +HPIYKLL PH R + INALA
Sbjct: 483 KAYVIVNDSCYHQLMSHWLNTHAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALA 542
Query: 301 RKNLINADGVID-------------ASMFKSWRFDKEGLPADLIRRGIAVPDPTQPDGLK 347
R++LINA+G+I+ ++++K+W F + LPADLI+RG+A+ DP+ P G++
Sbjct: 543 RQSLINANGIIETTFLPSKYSVEMSSAVYKNWVFTDQALPADLIKRGVAIKDPSTPHGVR 602
Query: 348 LLIEDYPYAADGLLIWSAIEDWVRTY----------------LKSWHNESINVGHADLRQ 391
LLIEDYPYAADGL IW+AI+ WV+ Y L+ W E++ GH DL+
Sbjct: 603 LLIEDYPYAADGLEIWAAIKTWVQEYVPLYYARDDDVKNDSELQHWWKEAVEKGHGDLKD 662
Query: 392 ESWWPTLTNGDDLVFILNTIIWLASAQHAALNFGQCPYGGYVPNRP 437
+ WWP L +DLV + IIW+ASA HAA+ FGQ PYGG + NRP
Sbjct: 663 KPWWPKLQTLEDLVEVCLIIIWIASALHAAVGFGQYPYGGLIMNRP 708
>pdb|3BNC|A Chain A, Lipoxygenase-1 (Soybean) I553g Mutant
Length = 839
Score = 372 bits (954), Expect = e-103, Method: Compositional matrix adjust.
Identities = 215/526 (40%), Positives = 284/526 (53%), Gaps = 118/526 (22%)
Query: 25 VFNDLGNPDRGSEFVRPTLGGEQR-PYPRRCRTGRLPTDTDMHAESRIEKPLPMYVPRDE 83
V+NDLGNPD+ + RP LGG PYPRR RTGR PT TD + E + E YVPRDE
Sbjct: 188 VYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEV---FYVPRDE 244
Query: 84 QFEESK-HDAFSAGR------LKAALRNLIPLLKASISAHN-RDFRDKF----------- 124
K DA G ++ A + L I H+ +D D +
Sbjct: 245 NLGHLKSKDALEIGTKSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLPRDVI 304
Query: 125 ----------------------------------AWLQDDEFACQALAGVNPVTIDGLQA 150
AW+ D+EFA + +AGVNP I GL+
Sbjct: 305 STIIPLPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEE 364
Query: 151 FPPVSNLDPAIYGPQESALKEEHIIGQLDGMSVQQVLKENKLYVLDCHHIYLPFLDKINA 210
FPP SNLDPAIYG Q S + + + LDG ++ + L +L++LD H I++P++ +IN
Sbjct: 365 FPPKSNLDPAIYGDQSSKITADSL--DLDGYTMDEALGSRRLFMLDYHDIFMPYVRQINQ 422
Query: 211 LDGRKAYATRTIFFLNSLGPLKPIAIELSLPPSGPDQSAA-------------------- 250
L+ K YATRTI FL G LKP+AIELSLP S D SAA
Sbjct: 423 LNSAKTYATRTILFLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKEGVESTIWLLA 482
Query: 251 --HVCSNDAR--------VRTHACMEPFILTAHRQLSAMHPIYKLLDPHMRYTLEINALA 300
+V ND+ + THA MEPF++ HR LS +HPIYKLL PH R + INALA
Sbjct: 483 KAYVIVNDSCYHQLMSHWLNTHAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALA 542
Query: 301 RKNLINADGV-------------IDASMFKSWRFDKEGLPADLIRRGIAVPDPTQPDGLK 347
R++LINA+G+ + ++++K+W F + LPADLI+RG+A+ DP+ P G++
Sbjct: 543 RQSLINANGIGETTFLPSKYSVEMSSAVYKNWVFTDQALPADLIKRGVAIKDPSTPHGVR 602
Query: 348 LLIEDYPYAADGLLIWSAIEDWVRTY----------------LKSWHNESINVGHADLRQ 391
LLIEDYPYAADGL IW+AI+ WV+ Y L+ W E++ GH DL+
Sbjct: 603 LLIEDYPYAADGLEIWAAIKTWVQEYVPLYYARDDDVKNDSELQHWWKEAVEKGHGDLKD 662
Query: 392 ESWWPTLTNGDDLVFILNTIIWLASAQHAALNFGQCPYGGYVPNRP 437
+ WWP L +DLV + IIW+ASA HAA+NFGQ PYGG + NRP
Sbjct: 663 KPWWPKLQTLEDLVEVCLIIIWIASALHAAVNFGQYPYGGLIMNRP 708
>pdb|3BNE|A Chain A, Lipoxygenase-1 (Soybean) I553a Mutant
Length = 839
Score = 372 bits (954), Expect = e-103, Method: Compositional matrix adjust.
Identities = 215/526 (40%), Positives = 284/526 (53%), Gaps = 118/526 (22%)
Query: 25 VFNDLGNPDRGSEFVRPTLGGEQR-PYPRRCRTGRLPTDTDMHAESRIEKPLPMYVPRDE 83
V+NDLGNPD+ + RP LGG PYPRR RTGR PT TD + E + E YVPRDE
Sbjct: 188 VYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEV---FYVPRDE 244
Query: 84 QFEESK-HDAFSAGR------LKAALRNLIPLLKASISAHN-RDFRDKF----------- 124
K DA G ++ A + L I H+ +D D +
Sbjct: 245 NLGHLKSKDALEIGTKSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLPRDVI 304
Query: 125 ----------------------------------AWLQDDEFACQALAGVNPVTIDGLQA 150
AW+ D+EFA + +AGVNP I GL+
Sbjct: 305 STIIPLPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEE 364
Query: 151 FPPVSNLDPAIYGPQESALKEEHIIGQLDGMSVQQVLKENKLYVLDCHHIYLPFLDKINA 210
FPP SNLDPAIYG Q S + + + LDG ++ + L +L++LD H I++P++ +IN
Sbjct: 365 FPPKSNLDPAIYGDQSSKITADSL--DLDGYTMDEALGSRRLFMLDYHDIFMPYVRQINQ 422
Query: 211 LDGRKAYATRTIFFLNSLGPLKPIAIELSLPPSGPDQSAA-------------------- 250
L+ K YATRTI FL G LKP+AIELSLP S D SAA
Sbjct: 423 LNSAKTYATRTILFLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKEGVESTIWLLA 482
Query: 251 --HVCSNDAR--------VRTHACMEPFILTAHRQLSAMHPIYKLLDPHMRYTLEINALA 300
+V ND+ + THA MEPF++ HR LS +HPIYKLL PH R + INALA
Sbjct: 483 KAYVIVNDSCYHQLMSHWLNTHAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALA 542
Query: 301 RKNLINADGV-------------IDASMFKSWRFDKEGLPADLIRRGIAVPDPTQPDGLK 347
R++LINA+G+ + ++++K+W F + LPADLI+RG+A+ DP+ P G++
Sbjct: 543 RQSLINANGIAETTFLPSKYSVEMSSAVYKNWVFTDQALPADLIKRGVAIKDPSTPHGVR 602
Query: 348 LLIEDYPYAADGLLIWSAIEDWVRTY----------------LKSWHNESINVGHADLRQ 391
LLIEDYPYAADGL IW+AI+ WV+ Y L+ W E++ GH DL+
Sbjct: 603 LLIEDYPYAADGLEIWAAIKTWVQEYVPLYYARDDDVKNDSELQHWWKEAVEKGHGDLKD 662
Query: 392 ESWWPTLTNGDDLVFILNTIIWLASAQHAALNFGQCPYGGYVPNRP 437
+ WWP L +DLV + IIW+ASA HAA+NFGQ PYGG + NRP
Sbjct: 663 KPWWPKLQTLEDLVEVCLIIIWIASALHAAVNFGQYPYGGLIMNRP 708
>pdb|1FGT|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q697n Mutant
Length = 839
Score = 372 bits (954), Expect = e-103, Method: Compositional matrix adjust.
Identities = 215/526 (40%), Positives = 284/526 (53%), Gaps = 118/526 (22%)
Query: 25 VFNDLGNPDRGSEFVRPTLGGEQR-PYPRRCRTGRLPTDTDMHAESRIEKPLPMYVPRDE 83
V+NDLGNPD+ + RP LGG PYPRR RTGR PT TD + E + E YVPRDE
Sbjct: 188 VYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEV---FYVPRDE 244
Query: 84 QFEESK-HDAFSAGR------LKAALRNLIPLLKASISAHN-RDFRDKF----------- 124
K DA G ++ A + L I H+ +D D +
Sbjct: 245 NLGHLKSKDALEIGTKSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLPRDVI 304
Query: 125 ----------------------------------AWLQDDEFACQALAGVNPVTIDGLQA 150
AW+ D+EFA + +AGVNP I GL+
Sbjct: 305 STIIPLPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEE 364
Query: 151 FPPVSNLDPAIYGPQESALKEEHIIGQLDGMSVQQVLKENKLYVLDCHHIYLPFLDKINA 210
FPP SNLDPAIYG Q S + + + LDG ++ + L +L++LD H I++P++ +IN
Sbjct: 365 FPPKSNLDPAIYGDQSSKITADSL--DLDGYTMDEALGSRRLFMLDYHDIFMPYVRQINQ 422
Query: 211 LDGRKAYATRTIFFLNSLGPLKPIAIELSLPPSGPDQSAA-------------------- 250
L+ K YATRTI FL G LKP+AIELSLP S D SAA
Sbjct: 423 LNSAKTYATRTILFLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKEGVESTIWLLA 482
Query: 251 --HVCSNDAR--------VRTHACMEPFILTAHRQLSAMHPIYKLLDPHMRYTLEINALA 300
+V ND+ + THA MEPF++ HR LS +HPIYKLL PH R + INALA
Sbjct: 483 KAYVIVNDSCYHQLMSHWLNTHAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALA 542
Query: 301 RKNLINADGVID-------------ASMFKSWRFDKEGLPADLIRRGIAVPDPTQPDGLK 347
R++LINA+G+I+ ++++K+W F + LPADLI+RG+A+ DP+ P G++
Sbjct: 543 RQSLINANGIIETTFLPSKYSVEMSSAVYKNWVFTDQALPADLIKRGVAIKDPSTPHGVR 602
Query: 348 LLIEDYPYAADGLLIWSAIEDWVRTY----------------LKSWHNESINVGHADLRQ 391
LLIEDYPYAADGL IW+AI+ WV+ Y L+ W E++ GH DL+
Sbjct: 603 LLIEDYPYAADGLEIWAAIKTWVQEYVPLYYARDDDVKNDSELQHWWKEAVEKGHGDLKD 662
Query: 392 ESWWPTLTNGDDLVFILNTIIWLASAQHAALNFGQCPYGGYVPNRP 437
+ WWP L +DLV + IIW+ASA HAA+NFG PYGG + NRP
Sbjct: 663 KPWWPKLQTLEDLVEVCLIIIWIASALHAAVNFGNYPYGGLIMNRP 708
>pdb|2IUK|A Chain A, Crystal Structure Of Soybean Lipoxygenase-D
pdb|2IUK|B Chain B, Crystal Structure Of Soybean Lipoxygenase-D
Length = 864
Score = 353 bits (905), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 208/533 (39%), Positives = 281/533 (52%), Gaps = 120/533 (22%)
Query: 25 VFNDLGNPDRGSEFVRPTLGG-EQRPYPRRCRTGRLPTDTDMHAESRIEKPLPMYVPRDE 83
V+NDLGNPD G RP LGG PYP R RTGR T TD ++E KP +YVPRDE
Sbjct: 214 VYNDLGNPDGGDP--RPILGGCSIYPYPLRVRTGRERTRTDPNSE----KPGEVYVPRDE 267
Query: 84 QFEESKHDAFSAGRLKAALRNLIPLLKASI------SAHNRDFRD--------------- 122
F K F +K+ ++IPL K++I S+ F D
Sbjct: 268 NFGHLKSSDFLTYGIKSLSHDVIPLFKSAIFQLRVTSSEFESFEDVRSLYEGGIKLPTDI 327
Query: 123 ---------------------------------KFAWLQDDEFACQALAGVNPVTIDGLQ 149
K + D+EFA + +AGVNP I LQ
Sbjct: 328 LSQISPLPALKEIFRTDGENVLQFPPPHVAKVSKSGVMTDEEFAREVIAGVNPNVIRRLQ 387
Query: 150 AFPPVSNLDPAIYGPQESALKEEHIIGQLDGMSVQQVLKENKLYVLDCHHIYLPFLDKIN 209
FPP S LDP +YG Q S + +E + + G++V++ L +L++LD ++P+L +IN
Sbjct: 388 EFPPKSTLDPTLYGDQTSTITKEQLEINMGGVTVEEALSTQRLFILDYQDAFIPYLTRIN 447
Query: 210 ALDGRKAYATRTIFFLNSLGPLKPIAIELSLPPS-----GPDQ----------------- 247
+L KAYATRTI FL G LKP+AIELS P GP+
Sbjct: 448 SLPTAKAYATRTILFLKDDGTLKPLAIELSKPHPDGDNLGPESIVVLPATEGVDSTIWLL 507
Query: 248 SAAHVCSNDAR--------VRTHACMEPFILTAHRQLSAMHPIYKLLDPHMRYTLEINAL 299
+ AHV ND+ + THA MEPF + +R LS +HPIYKLL PH R T+ IN L
Sbjct: 508 AKAHVIVNDSGYHQLVSHWLNTHAVMEPFAIATNRHLSVLHPIYKLLYPHYRDTININGL 567
Query: 300 ARKNLINADGVID-------------ASMFKSWRFDKEGLPADLIRRGIAVPDPTQPDGL 346
AR++LINADG+I+ +S++K+W F + LPADL++RG+A+ DP+ P GL
Sbjct: 568 ARQSLINADGIIEKSFLPGKYSIEMSSSVYKNWVFTHQALPADLVKRGLAIEDPSAPHGL 627
Query: 347 KLLIEDYPYAADGLLIWSAIEDWVRTY----------------LKSWHNESINVGHADLR 390
+L+IEDYPYA DGL IW AI+ WV Y L++W E++ GH DL+
Sbjct: 628 RLVIEDYPYAVDGLEIWDAIKTWVHEYVSLYYPTDAAVQQDTELQAWWKEAVEKGHGDLK 687
Query: 391 QESWWPTLTNGDDLVFILNTIIWLASAQHAALNFGQCPYGGYVPNRPPFDEKW 443
++ WWP +DL+ + I+W ASA HAA+NFGQ PYGG + NRP ++
Sbjct: 688 EKPWWPKKQTTEDLIQSCSIIVWTASALHAAVNFGQYPYGGLILNRPTLARRF 740
>pdb|2IUJ|A Chain A, Crystal Structure Of Soybean Lipoxygenase-B
Length = 853
Score = 347 bits (891), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 203/532 (38%), Positives = 281/532 (52%), Gaps = 118/532 (22%)
Query: 25 VFNDLGNPDRGSEFVRPTLGGEQRPYPRRCRTGRLPTDTDMHAESRIEKPLP-MYVPRDE 83
V+NDLG+PD+G ++ RP LGG PYPRR RTGR T D ++E KP +Y+PRDE
Sbjct: 202 VYNDLGDPDKGEKYARPVLGGSALPYPRRGRTGRGKTRKDPNSE----KPGDFVYLPRDE 257
Query: 84 QFEESKHDAFSAGRLKAALRNL-------------------------------------- 105
F K F A +K+ +++
Sbjct: 258 AFGHLKSSDFLAYGIKSVAQDVLPVLTDAFDGNLLSLDFDNFAEVRKLYEGGVTLPTNFL 317
Query: 106 -----IPLLKASISAHNRDFR----------DKFAWLQDDEFACQALAGVNPVTIDGLQA 150
IP++K F DK AW+ D+EFA + +AG+NP I ++
Sbjct: 318 SNITPIPIIKELFRTDGEQFLKYPPPKVMQVDKSAWMTDEEFARETIAGLNPNVIKIIEE 377
Query: 151 FPPVSNLDPAIYGPQESALKEEHIIGQLDGMSVQQVLKENKLYVLDCHHIYLPFLDKINA 210
FP S LD YG + +EH+ L G++V+Q ++ KL++LD H +P+L KINA
Sbjct: 378 FPLSSKLDTQAYGDHTCIITKEHLEPNLGGLTVEQAIQNKKLFILDHHDYLIPYLRKINA 437
Query: 211 LDGRKAYATRTIFFLNSLGPLKPIAIELSLP-PSGPDQ---------------------S 248
+ K YATRTIFFL + G L P+AIELS P P G + +
Sbjct: 438 -NTTKTYATRTIFFLKNDGTLTPLAIELSKPHPQGEEYGPVSEVYVPSSEGVEAYIWLLA 496
Query: 249 AAHVCSNDA--------RVRTHACMEPFILTAHRQLSAMHPIYKLLDPHMRYTLEINALA 300
A+V NDA + THA +EPF++ +R LS +HPIYKLL PH R T+ IN+LA
Sbjct: 497 KAYVVVNDACYHQIISHWLNTHAVVEPFVIATNRHLSVVHPIYKLLFPHYRDTMNINSLA 556
Query: 301 RKNLINADGVID-------------ASMFKSWRFDKEGLPADLIRRGIAVPDPTQPDGLK 347
RK+L+NADG+I+ A ++K W F + LP DL++RG+AV DP+ P G++
Sbjct: 557 RKSLVNADGIIEKTFLWGRYSLEMSAVIYKDWVFTDQALPNDLVKRGVAVKDPSAPHGVR 616
Query: 348 LLIEDYPYAADGLLIWSAIEDWVRTY----------------LKSWHNESINVGHADLRQ 391
LLIEDYPYA+DGL IW AI+ WV Y L++W E + VGH DL+
Sbjct: 617 LLIEDYPYASDGLEIWDAIKSWVEEYVSFYYKSDEELQKDPELQAWWKELVEVGHGDLKD 676
Query: 392 ESWWPTLTNGDDLVFILNTIIWLASAQHAALNFGQCPYGGYVPNRPPFDEKW 443
+ WW + ++LV T+IW+ASA HAA+NFGQ PYGG + NRP ++
Sbjct: 677 KPWWQKMQTREELVEASATLIWIASALHAAVNFGQYPYGGLILNRPTISRRF 728
>pdb|1IK3|A Chain A, Lipoxygenase-3 (Soybean) Complex With 13(S)-Hydroperoxy-
9(Z),11(E)-Octadecadienoic Acid
pdb|1HU9|A Chain A, Lipoxygenase-3 (Soybean) Complex With 4-Hydroperoxy-2-
Methoxy-Phenol
pdb|1JNQ|A Chain A, Lipoxygenase-3 (Soybean) Complex With Epigallocathechin
(Egc)
pdb|1N8Q|A Chain A, Lipoxygenase In Complex With Protocatechuic Acid
pdb|1NO3|A Chain A, Refined Structure Of Soybean Lipoxygenase-3 With
4-nitrocatechol At 2.15 Angstrom Resolution
pdb|1RRH|A Chain A, Soybean Lipoxygenase (Lox-3) At Ambient Temperatures At
2.0 A Resolution
pdb|1RRL|A Chain A, Soybean Lipoxygenase (Lox-3) At 93k At 2.0 A Resolution
pdb|1RRL|B Chain B, Soybean Lipoxygenase (Lox-3) At 93k At 2.0 A Resolution
pdb|1LNH|A Chain A, Lipoxygenase-3(Soybean) Non-Heme Fe(Ii) Metalloprotein
Length = 857
Score = 329 bits (843), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 202/529 (38%), Positives = 273/529 (51%), Gaps = 111/529 (20%)
Query: 25 VFNDLGNPDRGSEFVRPTLGGEQR-PYPRRCRTGRLPTDTDMHAESRI------------ 71
V+NDLG+PD+G RP LGG PYPRR RTGR PT D ++ESR
Sbjct: 206 VYNDLGDPDKGENHARPVLGGNDTFPYPRRGRTGRKPTRKDPNSESRSNDVYLPRDEAFG 265
Query: 72 ----------------EKPLPM--------YVPRDEQFEESKHDAFSAG-RLKAALRNLI 106
+ LP+ + PR+ + H +S G +L + + I
Sbjct: 266 HLKSSDFLTYGLKSVSQNVLPLLQSAFDLNFTPREFDSFDEVHGLYSGGIKLPTDIISKI 325
Query: 107 ---PLLKASISAHNRDFR----------DKFAWLQDDEFACQALAGVNPVTIDGLQAFPP 153
P+LK K AW+ D+EFA + LAGVNP I L+ FPP
Sbjct: 326 SPLPVLKEIFRTDGEQALKFPPPKVIQVSKSAWMTDEEFAREMLAGVNPNLIRCLKDFPP 385
Query: 154 VSNLDPAIYGPQESALKEEHIIGQLDGMSVQQVLKENKLYVLDCHHIYLPFLDKINALDG 213
S LD +YG S + +EH+ L+G++V + ++ +L++LD H +P+L +INA
Sbjct: 386 RSKLDSQVYGDHTSQITKEHLEPNLEGLTVDEAIQNKRLFLLDHHDPIMPYLRRINA-TS 444
Query: 214 RKAYATRTIFFLNSLGPLKPIAIELSLPPSGPDQSAA----------------------H 251
KAYATRTI FL + G L+P+AIELSLP DQS A +
Sbjct: 445 TKAYATRTILFLKNDGTLRPLAIELSLPHPQGDQSGAFSQVFLPADEGVESSIWLLAKAY 504
Query: 252 VCSNDAR--------VRTHACMEPFILTAHRQLSAMHPIYKLLDPHMRYTLEINALARKN 303
V ND+ + THA +EPFI+ +R LS +HPIYKLL PH R T+ IN LAR +
Sbjct: 505 VVVNDSCYHQLVSHWLNTHAVVEPFIIATNRHLSVVHPIYKLLHPHYRDTMNINGLARLS 564
Query: 304 LINADGVID-------------ASMFKSWRFDKEGLPADLIRRGIAVPDPTQPDGLKLLI 350
L+N GVI+ A ++K W F + LPADLI+RG+A+ DP+ P G++L+I
Sbjct: 565 LVNDGGVIEQTFLWGRYSVEMSAVVYKDWVFTDQALPADLIKRGMAIEDPSCPHGIRLVI 624
Query: 351 EDYPYAADGLLIWSAIEDWVRTY----------------LKSWHNESINVGHADLRQESW 394
EDYPY DGL IW AI+ WV Y L++ E + VGH D + E W
Sbjct: 625 EDYPYTVDGLEIWDAIKTWVHEYVFLYYKSDDTLREDPELQACWKELVEVGHGDKKNEPW 684
Query: 395 WPTLTNGDDLVFILNTIIWLASAQHAALNFGQCPYGGYVPNRPPFDEKW 443
WP + ++LV IIW ASA HAA+NFGQ PYGG + NRP ++
Sbjct: 685 WPKMQTREELVEACAIIIWTASALHAAVNFGQYPYGGLILNRPTLSRRF 733
>pdb|1ROV|A Chain A, Lipoxygenase-3 Treated With Cumene Hydroperoxide
Length = 857
Score = 328 bits (840), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 201/529 (37%), Positives = 272/529 (51%), Gaps = 111/529 (20%)
Query: 25 VFNDLGNPDRGSEFVRPTLGGEQR-PYPRRCRTGRLPTDTDMHAESRI------------ 71
V+NDLG+PD+G RP LGG PYPRR RTGR PT D ++ESR
Sbjct: 206 VYNDLGDPDKGENHARPVLGGNDTFPYPRRGRTGRKPTRKDPNSESRSNDVYLPRDEAFG 265
Query: 72 ----------------EKPLPM--------YVPRDEQFEESKHDAFSAG-RLKAALRNLI 106
+ LP+ + PR+ + H +S G +L + + I
Sbjct: 266 HLKSSDFLTYGLKSVSQNVLPLLQSAFDLNFTPREFDSFDEVHGLYSGGIKLPTDIISKI 325
Query: 107 ---PLLKASISAHNRDFR----------DKFAWLQDDEFACQALAGVNPVTIDGLQAFPP 153
P+LK K AW+ D+EFA + LAGVNP I L+ FPP
Sbjct: 326 SPLPVLKEIFRTDGEQALKFPPPKVIQVSKSAWMTDEEFAREMLAGVNPNLIRCLKDFPP 385
Query: 154 VSNLDPAIYGPQESALKEEHIIGQLDGMSVQQVLKENKLYVLDCHHIYLPFLDKINALDG 213
S LD +YG S + +EH+ L+G++V + ++ +L++LD H +P+L +INA
Sbjct: 386 RSKLDSQVYGDHTSQITKEHLEPNLEGLTVDEAIQNKRLFLLDHHDPIMPYLRRINA-TS 444
Query: 214 RKAYATRTIFFLNSLGPLKPIAIELSLPPSGPDQSA----------------------AH 251
KAYATRTI FL + G L+P+AIELSLP DQS A+
Sbjct: 445 TKAYATRTILFLKNDGTLRPLAIELSLPHPQGDQSGAFSQVFLPADEGVESSIWLLAKAY 504
Query: 252 VCSNDA--------RVRTHACMEPFILTAHRQLSAMHPIYKLLDPHMRYTLEINALARKN 303
V ND+ + THA +EPFI+ +R LS +HPIYKLL PH R T+ IN LAR +
Sbjct: 505 VVVNDSCYHQLVSHXLNTHAVVEPFIIATNRHLSVVHPIYKLLHPHYRDTMNINGLARLS 564
Query: 304 LINADGVID-------------ASMFKSWRFDKEGLPADLIRRGIAVPDPTQPDGLKLLI 350
+N GVI+ A ++K W F + LPADLI+RG+A+ DP+ P G++L+I
Sbjct: 565 XVNDGGVIEQTFLWGRYSVEMSAVVYKDWVFTDQALPADLIKRGMAIEDPSCPHGIRLVI 624
Query: 351 EDYPYAADGLLIWSAIEDWVRTY----------------LKSWHNESINVGHADLRQESW 394
EDYPY DGL IW AI+ WV Y L++ E + VGH D + E W
Sbjct: 625 EDYPYTVDGLEIWDAIKTWVHEYVFLYYKSDDTLREDPELQACWKELVEVGHGDKKNEPW 684
Query: 395 WPTLTNGDDLVFILNTIIWLASAQHAALNFGQCPYGGYVPNRPPFDEKW 443
WP + ++LV IIW ASA HAA+NFGQ PYGG + NRP ++
Sbjct: 685 WPKMQTREELVEACAIIIWTASALHAAVNFGQYPYGGLILNRPTLSRRF 733
>pdb|3DY5|A Chain A, Allene Oxide Synthase 8r-Lipoxygenase From Plexaura
Homomalla
pdb|3DY5|C Chain C, Allene Oxide Synthase 8r-Lipoxygenase From Plexaura
Homomalla
Length = 1066
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 120/452 (26%), Positives = 182/452 (40%), Gaps = 120/452 (26%)
Query: 79 VPRDEQFEESKHDAFSAGRLKAALRNLIPLLKASISAHNRDFRDKF-------------- 124
+PRD QF + K ++ R KAAL NL + N D D +
Sbjct: 537 LPRDVQFTDEKSRSYQESR-KAALVNL-GIGSLFTMFENWDSYDDYHILYRNWILGGTPN 594
Query: 125 ---AWLQDDEFACQALAGVNPVTIDGLQAFP---PVSNLDPAIYGPQESALKEEHIIGQL 178
W +D F Q L G NPV + A P PV+N EH+ L
Sbjct: 595 MADRWHEDRWFGYQFLNGANPVILTRCDALPSNFPVTN---------------EHVNASL 639
Query: 179 D-GMSVQQVLKENKLYVLDCHHIYL------PFLDKI----------NALDGRKAYATRT 221
D G ++ + +K+ +Y++D + P L+ I + D R A
Sbjct: 640 DRGKNLDEEIKDGHIYIVDFKVLVGAKSYGGPVLEDIGYKVPDHLKHDEADIRYCAAPLA 699
Query: 222 IFFLNSLGPLKPIAIELSLPPS-----------------------GPDQSAAHVCSNDAR 258
+F++N LG L PIAI+++ P G +S H N
Sbjct: 700 LFYVNKLGHLMPIAIQINQEPGPENPIWTPHEENEHDWMMAKFWLGVAESNFHQL-NTHL 758
Query: 259 VRTHACMEPFILTAHRQLSAMHPIYKLLDPHMRYTLEINALARKNLINADGVIDASM--- 315
+RTH E F L+ R L++ HPI+KLL PH+ L I+ + RK LI + G++D S+
Sbjct: 759 LRTHLTTESFALSTWRNLASAHPIFKLLQPHIYGVLAIDTIGRKELIGSGGIVDQSLSLG 818
Query: 316 -----------FKSWRFDKEGLPADLIRRGIAVPDPTQPDGLKLLIEDYPYAADGLLIWS 364
FK LP L +RG V DP++ G + Y DGL +W
Sbjct: 819 GGGHVTFMEKCFKEVNLQDYHLPNALKKRG--VDDPSKLPG-------FYYRDDGLALWE 869
Query: 365 AIEDWVRTYLKSWHNESINVGHADLRQESWWPTLTNG-------------------DDLV 405
AIE ++ + ++ +V + Q + NG + L
Sbjct: 870 AIETFIGEIIAIFYKNDDDVKRDNEIQSWIYDVHKNGWRVNPGHQDHGVPASFESREQLK 929
Query: 406 FILNTIIWLASAQHAALNFGQCPYGGYVPNRP 437
+L ++++ S QHAA+NF Q + G+ PN P
Sbjct: 930 EVLTSLVFTFSCQHAAVNFSQKDHYGFTPNAP 961
>pdb|3FG1|A Chain A, Crystal Structure Of Delta413-417:gs Lox
pdb|3FG1|B Chain B, Crystal Structure Of Delta413-417:gs Lox
pdb|3FG1|C Chain C, Crystal Structure Of Delta413-417:gs Lox
pdb|3FG1|D Chain D, Crystal Structure Of Delta413-417:gs Lox
Length = 696
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 120/452 (26%), Positives = 182/452 (40%), Gaps = 120/452 (26%)
Query: 79 VPRDEQFEESKHDAFSAGRLKAALRNLIPLLKASISAHNRDFRDKF-------------- 124
+PRD QF + K ++ R KAAL NL + N D D +
Sbjct: 167 LPRDVQFTDEKSRSYQESR-KAALVNL-GIGSLFTMFENWDSYDDYHILYRNWILGGTPN 224
Query: 125 ---AWLQDDEFACQALAGVNPVTIDGLQAFP---PVSNLDPAIYGPQESALKEEHIIGQL 178
W +D F Q L G NPV + A P PV+N EH+ L
Sbjct: 225 MADRWHEDRWFGYQFLNGANPVILTRCDALPSNFPVTN---------------EHVNASL 269
Query: 179 D-GMSVQQVLKENKLYVLDCHHIYL------PFLDKI----------NALDGRKAYATRT 221
D G ++ + +K+ +Y++D + P L+ I + D R A
Sbjct: 270 DRGKNLDEEIKDGHIYIVDFKVLVGAKSYGGPVLEDIGYKVPDHLKHDEADIRYCAAPLA 329
Query: 222 IFFLNSLGPLKPIAIELSLPPS-----------------------GPDQSAAHVCSNDAR 258
+F++N LG L PIAI+++ P G +S H N
Sbjct: 330 LFYVNKLGHLMPIAIQINQEPGPENPIWTPHEENEHDWMMAKFWLGVAESNFHQL-NTHL 388
Query: 259 VRTHACMEPFILTAHRQLSAMHPIYKLLDPHMRYTLEINALARKNLINADGVIDASM--- 315
+RTH E F L+ R L++ HPI+KLL PH+ L I+ + RK LI + G++D S+
Sbjct: 389 LRTHLTTESFALSTWRNLASAHPIFKLLQPHIYGVLAIDTIGRKELIGSGGIVDQSLSLG 448
Query: 316 -----------FKSWRFDKEGLPADLIRRGIAVPDPTQPDGLKLLIEDYPYAADGLLIWS 364
FK LP L +RG V DP++ G + Y DGL +W
Sbjct: 449 GGGHVTFMEKCFKEVNLQDYHLPNALKKRG--VDDPSKLPG-------FYYRDDGLALWE 499
Query: 365 AIEDWVRTYLKSWHNESINVGHADLRQESWWPTLTNG-------------------DDLV 405
AIE ++ + ++ +V + Q + NG + L
Sbjct: 500 AIETFIGEIIAIFYKNDDDVKRDNEIQSWIYDVHKNGWRVNPGHQDHGVPASFESREQLK 559
Query: 406 FILNTIIWLASAQHAALNFGQCPYGGYVPNRP 437
+L ++++ S QHAA+NF Q + G+ PN P
Sbjct: 560 EVLTSLVFTFSCQHAAVNFSQKDHYGFTPNAP 591
>pdb|2FNQ|A Chain A, Insights From The X-Ray Crystal Structure Of Coral 8r-
Lipoxygenase: Calcium Activation Via A C2-Like Domain
And A Structural Basis Of Product Chirality
pdb|2FNQ|B Chain B, Insights From The X-Ray Crystal Structure Of Coral 8r-
Lipoxygenase: Calcium Activation Via A C2-Like Domain
And A Structural Basis Of Product Chirality
Length = 699
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 119/452 (26%), Positives = 182/452 (40%), Gaps = 120/452 (26%)
Query: 79 VPRDEQFEESKHDAFSAGRLKAALRNLIPLLKASISAHNRDFRDKF-------------- 124
+PRD QF + K ++ R KAAL NL + N D D +
Sbjct: 170 LPRDVQFTDEKSRSYQESR-KAALVNL-GIGSLFTMFENWDSYDDYHILYRNWILGGTPN 227
Query: 125 ---AWLQDDEFACQALAGVNPVTIDGLQAFP---PVSNLDPAIYGPQESALKEEHIIGQL 178
W +D F Q L G NPV + A P PV+N EH+ L
Sbjct: 228 MADRWHEDRWFGYQFLNGANPVILTRCDALPSNFPVTN---------------EHVNASL 272
Query: 179 D-GMSVQQVLKENKLYVLDCHHIYL------PFLDKI----------NALDGRKAYATRT 221
D G ++ + +K+ +Y++D + P L+ I + D R A
Sbjct: 273 DRGKNLDEEIKDGHIYIVDFKVLVGAKSYGGPVLEDIGYKVPDHLKHDEADIRYCAAPLA 332
Query: 222 IFFLNSLGPLKPIAIELSLPPS-----------------------GPDQSAAHVCSNDAR 258
+F++N LG L PIAI+++ P G +S H N
Sbjct: 333 LFYVNKLGHLMPIAIQINQEPGPENPIWTPHEENEHDWMMAKFWLGVAESNFHQL-NTHL 391
Query: 259 VRTHACMEPFILTAHRQLSAMHPIYKLLDPHMRYTLEINALARKNLINADGVIDASM--- 315
+RTH E F L+ R L++ HP++KLL PH+ L I+ + RK LI + G++D S+
Sbjct: 392 LRTHLTTESFALSTWRNLASAHPVFKLLQPHIYGVLAIDTIGRKELIGSGGIVDQSLSLG 451
Query: 316 -----------FKSWRFDKEGLPADLIRRGIAVPDPTQPDGLKLLIEDYPYAADGLLIWS 364
FK LP L +RG V DP++ G + Y DGL +W
Sbjct: 452 GGGHVTFMEKCFKEVNLQDYHLPNALKKRG--VDDPSKLPG-------FYYRDDGLALWE 502
Query: 365 AIEDWVRTYLKSWHNESINVGHADLRQESWWPTLTNG-------------------DDLV 405
AIE ++ + ++ +V + Q + NG + L
Sbjct: 503 AIETFIGEIIAIFYKNDDDVKRDNEIQSWIYDVHKNGWRVNPGHQDHGVPASFESREQLK 562
Query: 406 FILNTIIWLASAQHAALNFGQCPYGGYVPNRP 437
+L ++++ S QHAA+NF Q + G+ PN P
Sbjct: 563 EVLTSLVFTFSCQHAAVNFSQKDHYGFTPNAP 594
>pdb|3FG4|A Chain A, Crystal Structure Of Delta413-417:gs I805a Lox
pdb|3FG4|B Chain B, Crystal Structure Of Delta413-417:gs I805a Lox
pdb|3FG4|C Chain C, Crystal Structure Of Delta413-417:gs I805a Lox
pdb|3FG4|D Chain D, Crystal Structure Of Delta413-417:gs I805a Lox
Length = 696
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 119/452 (26%), Positives = 181/452 (40%), Gaps = 120/452 (26%)
Query: 79 VPRDEQFEESKHDAFSAGRLKAALRNLIPLLKASISAHNRDFRDKF-------------- 124
+PRD QF + K ++ R KAAL NL + N D D +
Sbjct: 167 LPRDVQFTDEKSRSYQESR-KAALVNL-GIGSLFTMFENWDSYDDYHILYRNWILGGTPN 224
Query: 125 ---AWLQDDEFACQALAGVNPVTIDGLQAFP---PVSNLDPAIYGPQESALKEEHIIGQL 178
W +D F Q L G NPV + A P PV+N EH+ L
Sbjct: 225 MADRWHEDRWFGYQFLNGANPVILTRCDALPSNFPVTN---------------EHVNASL 269
Query: 179 D-GMSVQQVLKENKLYVLDCHHIYL------PFLDKI----------NALDGRKAYATRT 221
D G ++ + +K+ +Y++D + P L+ I + D R A
Sbjct: 270 DRGKNLDEEIKDGHIYIVDFKVLVGAKSYGGPVLEDIGYKVPDHLKHDEADIRYCAAPLA 329
Query: 222 IFFLNSLGPLKPIAIELSLPPS-----------------------GPDQSAAHVCSNDAR 258
+F++N LG L PIAI+++ P G +S H N
Sbjct: 330 LFYVNKLGHLMPIAIQINQEPGPENPIWTPHEENEHDWMMAKFWLGVAESNFHQL-NTHL 388
Query: 259 VRTHACMEPFILTAHRQLSAMHPIYKLLDPHMRYTLEINALARKNLINADGVIDASM--- 315
+RTH E F L+ R L++ HPI+KLL PH+ L I+ + RK L + G++D S+
Sbjct: 389 LRTHLTTESFALSTWRNLASAHPIFKLLQPHIYGVLAIDTIGRKELAGSGGIVDQSLSLG 448
Query: 316 -----------FKSWRFDKEGLPADLIRRGIAVPDPTQPDGLKLLIEDYPYAADGLLIWS 364
FK LP L +RG V DP++ G + Y DGL +W
Sbjct: 449 GGGHVTFMEKCFKEVNLQDYHLPNALKKRG--VDDPSKLPG-------FYYRDDGLALWE 499
Query: 365 AIEDWVRTYLKSWHNESINVGHADLRQESWWPTLTNG-------------------DDLV 405
AIE ++ + ++ +V + Q + NG + L
Sbjct: 500 AIETFIGEIIAIFYKNDDDVKRDNEIQSWIYDVHKNGWRVNPGHQDHGVPASFESREQLK 559
Query: 406 FILNTIIWLASAQHAALNFGQCPYGGYVPNRP 437
+L ++++ S QHAA+NF Q + G+ PN P
Sbjct: 560 EVLTSLVFTFSCQHAAVNFSQKDHYGFTPNAP 591
>pdb|3FG3|A Chain A, Crystal Structure Of Delta413-417:gs I805w Lox
pdb|3FG3|B Chain B, Crystal Structure Of Delta413-417:gs I805w Lox
pdb|3FG3|C Chain C, Crystal Structure Of Delta413-417:gs I805w Lox
pdb|3FG3|D Chain D, Crystal Structure Of Delta413-417:gs I805w Lox
Length = 696
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 119/452 (26%), Positives = 181/452 (40%), Gaps = 120/452 (26%)
Query: 79 VPRDEQFEESKHDAFSAGRLKAALRNLIPLLKASISAHNRDFRDKF-------------- 124
+PRD QF + K ++ R KAAL NL + N D D +
Sbjct: 167 LPRDVQFTDEKSRSYQESR-KAALVNL-GIGSLFTMFENWDSYDDYHILYRNWILGGTPN 224
Query: 125 ---AWLQDDEFACQALAGVNPVTIDGLQAFP---PVSNLDPAIYGPQESALKEEHIIGQL 178
W +D F Q L G NPV + A P PV+N EH+ L
Sbjct: 225 MADRWHEDRWFGYQFLNGANPVILTRCDALPSNFPVTN---------------EHVNASL 269
Query: 179 D-GMSVQQVLKENKLYVLDCHHIYL------PFLDKI----------NALDGRKAYATRT 221
D G ++ + +K+ +Y++D + P L+ I + D R A
Sbjct: 270 DRGKNLDEEIKDGHIYIVDFKVLVGAKSYGGPVLEDIGYKVPDHLKHDEADIRYCAAPLA 329
Query: 222 IFFLNSLGPLKPIAIELSLPPS-----------------------GPDQSAAHVCSNDAR 258
+F++N LG L PIAI+++ P G +S H N
Sbjct: 330 LFYVNKLGHLMPIAIQINQEPGPENPIWTPHEENEHDWMMAKFWLGVAESNFHQL-NTHL 388
Query: 259 VRTHACMEPFILTAHRQLSAMHPIYKLLDPHMRYTLEINALARKNLINADGVIDASM--- 315
+RTH E F L+ R L++ HPI+KLL PH+ L I+ + RK L + G++D S+
Sbjct: 389 LRTHLTTESFALSTWRNLASAHPIFKLLQPHIYGVLAIDTIGRKELWGSGGIVDQSLSLG 448
Query: 316 -----------FKSWRFDKEGLPADLIRRGIAVPDPTQPDGLKLLIEDYPYAADGLLIWS 364
FK LP L +RG V DP++ G + Y DGL +W
Sbjct: 449 GGGHVTFMEKCFKEVNLQDYHLPNALKKRG--VDDPSKLPG-------FYYRDDGLALWE 499
Query: 365 AIEDWVRTYLKSWHNESINVGHADLRQESWWPTLTNG-------------------DDLV 405
AIE ++ + ++ +V + Q + NG + L
Sbjct: 500 AIETFIGEIIAIFYKNDDDVKRDNEIQSWIYDVHKNGWRVNPGHQDHGVPASFESREQLK 559
Query: 406 FILNTIIWLASAQHAALNFGQCPYGGYVPNRP 437
+L ++++ S QHAA+NF Q + G+ PN P
Sbjct: 560 EVLTSLVFTFSCQHAAVNFSQKDHYGFTPNAP 591
>pdb|3V98|A Chain A, S663d Stable-5-Lox
pdb|3V98|B Chain B, S663d Stable-5-Lox
pdb|3V99|A Chain A, S663d Stable-5-Lox In Complex With Arachidonic Acid
pdb|3V99|B Chain B, S663d Stable-5-Lox In Complex With Arachidonic Acid
Length = 691
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 108/418 (25%), Positives = 171/418 (40%), Gaps = 69/418 (16%)
Query: 79 VPRDEQFEESKHDAFSAGRLKAALRNLIPLLKASISAHNRDFRD------KFA------- 125
+PRD QF+ K F KA I + DF D K +
Sbjct: 181 LPRDIQFDSEKGVDFVLNYSKAMENLFINRFMHMFQSSWNDFADFEKIFVKISNTISERV 240
Query: 126 ---WLQDDEFACQALAGVNPVTIDGLQAFPPVSNLDPAIYGPQESALKEEHIIGQLDGMS 182
W +D F Q L G NPV I P P E +L+ + +S
Sbjct: 241 MNHWQEDLMFGYQFLNGANPVLIRRCTELPEKL---PVTTEMVECSLERQ--------LS 289
Query: 183 VQQVLKENKLYVLDCHHIYLPFLDKINALDGRKAYATRTIFFLNSLGPLKPIAIELSLPP 242
++Q +++ ++++D + +K + + A + + N + PIAI+L+ P
Sbjct: 290 LEQEVQQGNIFIVDFELLDGIDANKTDPCTLQFLAAPICLLYKNLANKIVPIAIQLNQIP 349
Query: 243 SGPD-------------QSAAHVCSNDARV--------RTHACMEPFILTAHRQLSAMHP 281
+ + V S+D V RTH E F + +RQL A+HP
Sbjct: 350 GDENPIFLPSDAKYDWLLAKIWVRSSDFHVHQTITHLLRTHLVSEVFGIAMYRQLPAVHP 409
Query: 282 IYKLLDPHMRYTLEINALARKNLINADGVIDASMFKSWRFDKEGLP---ADLIRRGIAVP 338
I+KLL H+R+T+ IN AR+ LI G+ D + + + DL + P
Sbjct: 410 IFKLLVAHVRFTIAINTKAREQLICECGLFDKANATGGGGHVQMVQRAMKDLTYASLCFP 469
Query: 339 DPTQPDGL--KLLIEDYPYAADGLLIWSAIEDW----VRTY------------LKSWHNE 380
+ + G+ K I Y Y DGLL+W AI + V Y L+ + N+
Sbjct: 470 EAIKARGMESKEDIPYYFYRDDGLLVWEAIRTFTAEVVDIYYEGDQVVEEDPELQDFVND 529
Query: 381 SINVGHADLRQESWWPTLTNGDDLVFILNTIIWLASAQHAALNFGQCPYGGYVPNRPP 438
G + + ++ + + L L +I+ ASAQHAA+NFGQ + ++PN PP
Sbjct: 530 VYVYGMRGRKSSGFPKSVKSREQLSEYLTVVIFTASAQHAAVNFGQYDWASWIPNAPP 587
>pdb|3V92|B Chain B, S663a Stable-5-Lox
pdb|3V92|A Chain A, S663a Stable-5-Lox
Length = 691
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 108/418 (25%), Positives = 171/418 (40%), Gaps = 69/418 (16%)
Query: 79 VPRDEQFEESKHDAFSAGRLKAALRNLIPLLKASISAHNRDFRD------KFA------- 125
+PRD QF+ K F KA I + DF D K +
Sbjct: 181 LPRDIQFDSEKGVDFVLNYSKAMENLFINRFMHMFQSSWNDFADFEKIFVKISNTISERV 240
Query: 126 ---WLQDDEFACQALAGVNPVTIDGLQAFPPVSNLDPAIYGPQESALKEEHIIGQLDGMS 182
W +D F Q L G NPV I P P E +L+ + +S
Sbjct: 241 MNHWQEDLMFGYQFLNGANPVLIRRCTELPEKL---PVTTEMVECSLERQ--------LS 289
Query: 183 VQQVLKENKLYVLDCHHIYLPFLDKINALDGRKAYATRTIFFLNSLGPLKPIAIELSLPP 242
++Q +++ ++++D + +K + + A + + N + PIAI+L+ P
Sbjct: 290 LEQEVQQGNIFIVDFELLDGIDANKTDPCTLQFLAAPICLLYKNLANKIVPIAIQLNQIP 349
Query: 243 SGPD-------------QSAAHVCSNDARV--------RTHACMEPFILTAHRQLSAMHP 281
+ + V S+D V RTH E F + +RQL A+HP
Sbjct: 350 GDENPIFLPSDAKYDWLLAKIWVRSSDFHVHQTITHLLRTHLVSEVFGIAMYRQLPAVHP 409
Query: 282 IYKLLDPHMRYTLEINALARKNLINADGVIDASMFKSWRFDKEGLP---ADLIRRGIAVP 338
I+KLL H+R+T+ IN AR+ LI G+ D + + + DL + P
Sbjct: 410 IFKLLVAHVRFTIAINTKAREQLICECGLFDKANATGGGGHVQMVQRAMKDLTYASLCFP 469
Query: 339 DPTQPDGL--KLLIEDYPYAADGLLIWSAIEDW----VRTY------------LKSWHNE 380
+ + G+ K I Y Y DGLL+W AI + V Y L+ + N+
Sbjct: 470 EAIKARGMESKEDIPYYFYRDDGLLVWEAIRTFTAEVVDIYYEGDQVVEEDPELQDFVND 529
Query: 381 SINVGHADLRQESWWPTLTNGDDLVFILNTIIWLASAQHAALNFGQCPYGGYVPNRPP 438
G + + ++ + + L L +I+ ASAQHAA+NFGQ + ++PN PP
Sbjct: 530 VYVYGMRGRKSSGFPKSVKSREQLSEYLTVVIFTASAQHAAVNFGQYDWASWIPNAPP 587
>pdb|3O8Y|A Chain A, Stable-5-Lipoxygenase
pdb|3O8Y|B Chain B, Stable-5-Lipoxygenase
Length = 691
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 108/418 (25%), Positives = 171/418 (40%), Gaps = 69/418 (16%)
Query: 79 VPRDEQFEESKHDAFSAGRLKAALRNLIPLLKASISAHNRDFRD------KFA------- 125
+PRD QF+ K F KA I + DF D K +
Sbjct: 181 LPRDIQFDSEKGVDFVLNYSKAMENLFINRFMHMFQSSWNDFADFEKIFVKISNTISERV 240
Query: 126 ---WLQDDEFACQALAGVNPVTIDGLQAFPPVSNLDPAIYGPQESALKEEHIIGQLDGMS 182
W +D F Q L G NPV I P P E +L+ + +S
Sbjct: 241 MNHWQEDLMFGYQFLNGANPVLIRRCTELPEKL---PVTTEMVECSLERQ--------LS 289
Query: 183 VQQVLKENKLYVLDCHHIYLPFLDKINALDGRKAYATRTIFFLNSLGPLKPIAIELSLPP 242
++Q +++ ++++D + +K + + A + + N + PIAI+L+ P
Sbjct: 290 LEQEVQQGNIFIVDFELLDGIDANKTDPCTLQFLAAPICLLYKNLANKIVPIAIQLNQIP 349
Query: 243 SGPD-------------QSAAHVCSNDARV--------RTHACMEPFILTAHRQLSAMHP 281
+ + V S+D V RTH E F + +RQL A+HP
Sbjct: 350 GDENPIFLPSDAKYDWLLAKIWVRSSDFHVHQTITHLLRTHLVSEVFGIAMYRQLPAVHP 409
Query: 282 IYKLLDPHMRYTLEINALARKNLINADGVIDASMFKSWRFDKEGLP---ADLIRRGIAVP 338
I+KLL H+R+T+ IN AR+ LI G+ D + + + DL + P
Sbjct: 410 IFKLLVAHVRFTIAINTKAREQLICECGLFDKANATGGGGHVQMVQRAMKDLTYASLCFP 469
Query: 339 DPTQPDGL--KLLIEDYPYAADGLLIWSAIEDW----VRTY------------LKSWHNE 380
+ + G+ K I Y Y DGLL+W AI + V Y L+ + N+
Sbjct: 470 EAIKARGMESKEDIPYYFYRDDGLLVWEAIRTFTAEVVDIYYEGDQVVEEDPELQDFVND 529
Query: 381 SINVGHADLRQESWWPTLTNGDDLVFILNTIIWLASAQHAALNFGQCPYGGYVPNRPP 438
G + + ++ + + L L +I+ ASAQHAA+NFGQ + ++PN PP
Sbjct: 530 VYVYGMRGRKSSGFPKSVKSREQLSEYLTVVIFTASAQHAAVNFGQYDWASWIPNAPP 587
>pdb|1LOX|A Chain A, Rabbit Reticulocyte 15-Lipoxygenase
Length = 662
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 112/420 (26%), Positives = 168/420 (40%), Gaps = 82/420 (19%)
Query: 79 VPRDEQFEESKHDAFSA----GRLKAALRNLIPLLK--ASISAHNRDF---RDKFA---- 125
+P DE+F E K F A G + AL+N + +L ++ NR F R K A
Sbjct: 160 LPVDERFLEDKKIDFEASLAWGLAELALKNSLNILAPWKTLDDFNRIFWCGRSKLARRVR 219
Query: 126 --WLQDDEFACQALAGVNPVTIDGLQAFPPVSNLDPAIYGPQESALKEEHIIGQLDGMSV 183
W +D F Q L G NP+ + P P + E + QL+
Sbjct: 220 DSWQEDSLFGYQFLNGANPMLLRRSVQLPARLVFPPGM----------EELQAQLE---- 265
Query: 184 QQVLKENKLYVLDCHHIYLPFLDKINA---LDGRKAYATRTIFF-LNSLGPLKPIAIELS 239
+ LK L+ D LD I A L ++ A + L G L P+ I+L
Sbjct: 266 -KELKAGTLFEAD-----FALLDNIKANVILYCQQYLAAPLVMLKLQPDGKLMPMVIQLH 319
Query: 240 LPPSGPD---------------QSAAHVCSNDARV--------RTHACMEPFILTAHRQL 276
LP G + V S+D +V R H E F + R L
Sbjct: 320 LPKIGSSPPPLFLPTDPPMVWLLAKCWVRSSDFQVHELNSHLLRGHLMAEVFTVATMRCL 379
Query: 277 SAMHPIYKLLDPHMRYTLEINALARKNLINADGVIDASMFKSWRFDKEGLP---ADLIRR 333
++HP++KL+ PH+RYTLEIN AR L++ G+ D M + L A L R
Sbjct: 380 PSIHPVFKLIVPHLRYTLEINVRARNGLVSDFGIFDQIMSTGGGGHVQLLQQAGAFLTYR 439
Query: 334 GIAVPDPTQPDGLKLLIEDYPYAADGLLIWSAIEDWVRTY----------------LKSW 377
PD GL L +E YA D L +W I +V+ L+SW
Sbjct: 440 SFCPPDDLADRGL-LGVESSFYAQDALRLWEIISRYVQGIMGLYYKTDEAVRDDLELQSW 498
Query: 378 HNESINVGHADLRQESWWPTLTNGDDLVFILNTIIWLASAQHAALNFGQCPYGGYVPNRP 437
E +G +++ + +L + + I+ + QH++++ GQ + +VPN P
Sbjct: 499 CREITEIGLQGAQKQGFPTSLQSVAQACHFVTMCIFTCTGQHSSIHLGQLDWFTWVPNAP 558
>pdb|2P0M|A Chain A, Revised Structure Of Rabbit Reticulocyte 15s-Lipoxygenase
pdb|2P0M|B Chain B, Revised Structure Of Rabbit Reticulocyte 15s-Lipoxygenase
Length = 662
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 112/420 (26%), Positives = 168/420 (40%), Gaps = 82/420 (19%)
Query: 79 VPRDEQFEESKHDAFSA----GRLKAALRNLIPLLK--ASISAHNRDF---RDKFA---- 125
+P DE+F E K F A G + AL+N + +L ++ NR F R K A
Sbjct: 160 LPVDERFLEDKKIDFEASLAWGLAELALKNSLNILAPWKTLDDFNRIFWCGRSKLARRVR 219
Query: 126 --WLQDDEFACQALAGVNPVTIDGLQAFPPVSNLDPAIYGPQESALKEEHIIGQLDGMSV 183
W +D F Q L G NP+ + P P + E + QL+
Sbjct: 220 DSWQEDSLFGYQFLNGANPMLLRRSVQLPARLVFPPGM----------EELQAQLE---- 265
Query: 184 QQVLKENKLYVLDCHHIYLPFLDKINA---LDGRKAYATRTIFF-LNSLGPLKPIAIELS 239
+ LK L+ D LD I A L ++ A + L G L P+ I+L
Sbjct: 266 -KELKAGTLFEAD-----FALLDNIKANVILYCQQYLAAPLVMLKLQPDGKLMPMVIQLH 319
Query: 240 LPPSGPD---------------QSAAHVCSNDARV--------RTHACMEPFILTAHRQL 276
LP G + V S+D +V R H E F + R L
Sbjct: 320 LPKIGSSPPPLFLPTDPPMVWLLAKCWVRSSDFQVHELNSHLLRGHLMAEVFTVATMRCL 379
Query: 277 SAMHPIYKLLDPHMRYTLEINALARKNLINADGVIDASMFKSWRFDKEGLP---ADLIRR 333
++HP++KL+ PH+RYTLEIN AR L++ G+ D M + L A L R
Sbjct: 380 PSIHPVFKLIVPHLRYTLEINVRARNGLVSDFGIFDQIMSTGGGGHVQLLQQAGAFLTYR 439
Query: 334 GIAVPDPTQPDGLKLLIEDYPYAADGLLIWSAIEDWVRTY----------------LKSW 377
PD GL L +E YA D L +W I +V+ L+SW
Sbjct: 440 SFCPPDDLADRGL-LGVESSFYAQDALRLWEIISRYVQGIMGLYYKTDEAVRDDLELQSW 498
Query: 378 HNESINVGHADLRQESWWPTLTNGDDLVFILNTIIWLASAQHAALNFGQCPYGGYVPNRP 437
E +G +++ + +L + + I+ + QH++++ GQ + +VPN P
Sbjct: 499 CREITEIGLQGAQKQGFPTSLQSVAQACHFVTMCIFTCTGQHSSIHLGQLDWFTWVPNAP 558
>pdb|3VF1|A Chain A, Structure Of A Calcium-Dependent 11r-Lipoxygenase Suggests
A Mechanism For Ca-Regulation
pdb|3VF1|B Chain B, Structure Of A Calcium-Dependent 11r-Lipoxygenase Suggests
A Mechanism For Ca-Regulation
Length = 698
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 96/370 (25%), Positives = 157/370 (42%), Gaps = 85/370 (22%)
Query: 126 WLQDDEFACQALAGVNPVTIDGLQAFPPVSNLDPAIYGPQESALKEEHIIGQLD-GMSVQ 184
W D F Q L G NP I P + +K E + LD G +++
Sbjct: 251 WRDDVWFGSQFLNGSNPEVIRRCDKLP------------ENFPVKNEMVEKLLDRGYTLE 298
Query: 185 QVLKENKLYVLDCHHIY-LPFLDKINALDGRKAYATRTIFFLNSLGPLKPIAIELSLPPS 243
+ +KE +++ D + +P +D D R +F+L + + PIAI+L P
Sbjct: 299 KAMKEGLIFITDYKILEGIPTMD--TPEDKRYITTPLGLFYLKNNDDIIPIAIQLYQQP- 355
Query: 244 GPDQS-------------AAHV---CSNDAR-------VRTHACMEPFILTAHRQLSAMH 280
G + S A + C++ +R H MEP +++ R L ++H
Sbjct: 356 GENNSIWTPLKDTEWDWIMAKLWLRCADTQYHQMITHLLRCHLMMEPTAVSSWRNLPSVH 415
Query: 281 PIYKLLDPHMRYTLEINALARKNLINADGVIDASM--------------FKSWRFDKEGL 326
P++KLL PH + + IN L R +LI G D + ++S FD L
Sbjct: 416 PVWKLLYPHTKGIMAINTLGRNDLIPTGGAADKVLSIGGGGQVTLMQKHYRSVTFDSYDL 475
Query: 327 PADLIRRGIAVPDPTQPDGLKLLIEDYPYAADGLLIWSAIEDWVRTYLKSWHNESINVGH 386
DL +RG+ DGL+ + Y D LL+W+ I +V+ ++ ++N+ +V
Sbjct: 476 VKDLRQRGV--------DGLR----KFYYKDDALLLWNVIHQFVQDIIQIYYNDDDSVKK 523
Query: 387 ADLRQ-------ESWWPTLTNGDD------------LVFILNTIIWLASAQHAALNFGQC 427
+ Q E+ +P ++G D LV L +++ S QHAA+NF Q
Sbjct: 524 DNEIQDWIRDLHENGYPAGSDGTDKKVPKSFENREELVHFLTVVVFTCSCQHAAVNFSQM 583
Query: 428 PYGGYVPNRP 437
G+ PN P
Sbjct: 584 ATYGFHPNSP 593
>pdb|3RDE|A Chain A, Crystal Structure Of The Catalytic Domain Of Porcine
Leukocyte 12- Lipoxygenase
pdb|3RDE|B Chain B, Crystal Structure Of The Catalytic Domain Of Porcine
Leukocyte 12- Lipoxygenase
pdb|3RDE|C Chain C, Crystal Structure Of The Catalytic Domain Of Porcine
Leukocyte 12- Lipoxygenase
pdb|3RDE|D Chain D, Crystal Structure Of The Catalytic Domain Of Porcine
Leukocyte 12- Lipoxygenase
Length = 573
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 108/425 (25%), Positives = 170/425 (40%), Gaps = 92/425 (21%)
Query: 79 VPRDEQFEESKHDAFSAGRLKA----ALRNLIPLLKA--SISAHNRDF---------RDK 123
+P DE+F E K F A K A+++ + +L + S+ + NR F R +
Sbjct: 71 LPVDERFLEDKRIDFEASLAKGLADLAVKDSLNVLMSWNSLDSFNRIFWSGQSKLAERVR 130
Query: 124 FAWLQDDEFACQALAGVNPVTIDGLQAFPPVSNLDPAIYGPQESALKEEHIIGQLDGMSV 183
+W +D F Q L G NP+ + P P + E + QL+
Sbjct: 131 DSWKEDALFGYQFLNGTNPMLLRHSVELPARLKFPPGM----------EELQAQLE---- 176
Query: 184 QQVLKENKLYVLDCHHIYLPFLDKINA---LDGRKAYATRTIFF-LNSLGPLKPIAIELS 239
+ L+ L+ D LD I A L ++ A + L G L P+ I+L
Sbjct: 177 -KELQGGTLFEAD-----FSLLDGIKANVILSSQQYLAVPLVMLKLQPDGKLLPMVIQLQ 230
Query: 240 LP-----------PSGPDQ----SAAHVCSNDARV--------RTHACMEPFILTAHRQL 276
LP P+ P + V S+D ++ R H E + R L
Sbjct: 231 LPREGSPLPPLFLPTDPPMVWLLAKCWVRSSDFQLHELHSHLLRGHLMAEVIAVATMRCL 290
Query: 277 SAMHPIYKLLDPHMRYTLEINALARKNLINADGVIDASMFKSWRFDKEGLPADLIRRGIA 336
++HPI+KLL PH RYT+EIN AR L++ G+ D + G +L+RR A
Sbjct: 291 PSIHPIFKLLIPHFRYTMEINVRARNGLVSDLGIFDQVVSTG-----GGGHVELLRRAAA 345
Query: 337 V--------PDPTQPDGLKLLIEDYPYAADGLLIWSAIEDWVRTY--------------- 373
+ PD GL L +E YA D L +W I +V
Sbjct: 346 LLTYSSFCPPDDLADRGL-LGVESSFYAQDALRLWEVISRYVEGIVSLHYKTDESVKEDF 404
Query: 374 -LKSWHNESINVGHADLRQESWWPTLTNGDDLVFILNTIIWLASAQHAALNFGQCPYGGY 432
L++W E +G + + +L + + L + I+ + QH++ + GQ + +
Sbjct: 405 ELQAWCREFTEIGLLGAQDRGFPVSLQSKEQLCHFVTMCIFTCTGQHSSNHLGQLDWYTW 464
Query: 433 VPNRP 437
VPN P
Sbjct: 465 VPNAP 469
>pdb|3D3L|A Chain A, The 2.6 A Crystal Structure Of The Lipoxygenase Domain Of
Human Arachidonate 12-Lipoxygenase, 12s-Type (Casp
Target)
pdb|3D3L|B Chain B, The 2.6 A Crystal Structure Of The Lipoxygenase Domain Of
Human Arachidonate 12-Lipoxygenase, 12s-Type (Casp
Target)
Length = 541
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 101/408 (24%), Positives = 156/408 (38%), Gaps = 88/408 (21%)
Query: 92 AFSAGRLKAALRNLIPLLKASISAHNRDF-----------RDKFAWLQDDEFACQALAGV 140
AG L+ AL+ + LL + + D + + W D+ F+ Q L G
Sbjct: 23 TLKAGALEMALKRVYTLLSSWNCLEDFDQIFWGQKSALAEKVRQCWQDDELFSYQFLNGA 82
Query: 141 NPVTIDGLQAFPPVSNLDPAIYGPQESALKEEHIIGQLDGMSVQQVLKENKLYVLDCHHI 200
NP+ + + P L + E + QL+ + L+ L+ D
Sbjct: 83 NPMLLRRSTSLPSRLVLPSGM----------EELRAQLE-----KELQNGSLFEAD---- 123
Query: 201 YLPFLDKI--NALDGRKAYATRTIFFLNSL--GPLKPIAIEL---------------SLP 241
LD I N + G K Y + L G L+P+ I++ S P
Sbjct: 124 -FILLDGIPANVIRGEKQYLAAPLVMLKMEPNGKLQPMVIQIQPPNPSSPTPTLFLPSDP 182
Query: 242 PSGPDQSAAHVCSNDARVR--------THACMEPFILTAHRQLSAMHPIYKLLDPHMRYT 293
P + + V ++D ++ TH E + R L +HPI+K L PH+RYT
Sbjct: 183 PLAWLLAKSWVRNSDFQLHEIQYHLLNTHLVAEVIAVATMRCLPGLHPIFKFLIPHIRYT 242
Query: 294 LEINALARKNLINADGVIDASMFKSWRFDKEGLPADLIRRGIAV--------PDPTQPDG 345
+EIN AR LI+ G+ D ++ G L+RR A PD G
Sbjct: 243 MEINTRARTQLISDGGIFDKAVSTG-----GGGHVQLLRRAAAQLTYCSLCPPDDLADRG 297
Query: 346 LKLLIEDYPYAADGLLIWSAIEDWVRTY----------------LKSWHNESINVGHADL 389
L L + YA D L +W I +V L++W E VG
Sbjct: 298 L-LGLPGALYAHDALRLWEIIARYVEGIVHLFYQRDDIVKGDPELQAWCREITEVGLCQA 356
Query: 390 RQESWWPTLTNGDDLVFILNTIIWLASAQHAALNFGQCPYGGYVPNRP 437
+ + + + L L ++ +AQHAA+N GQ + +VPN P
Sbjct: 357 QDRGFPVSFQSQSQLCHFLTMCVFTCTAQHAAINQGQLDWYAWVPNAP 404
>pdb|1OJ7|A Chain A, Structural Genomics, Unknown Function Crystal Structure Of
E. Coli K-12 Yqhd
pdb|1OJ7|B Chain B, Structural Genomics, Unknown Function Crystal Structure Of
E. Coli K-12 Yqhd
pdb|1OJ7|C Chain C, Structural Genomics, Unknown Function Crystal Structure Of
E. Coli K-12 Yqhd
pdb|1OJ7|D Chain D, Structural Genomics, Unknown Function Crystal Structure Of
E. Coli K-12 Yqhd
Length = 408
Score = 31.6 bits (70), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 22/138 (15%)
Query: 233 PIAIELSLPPSGPDQSAAHVCSNDARVRTHACMEPFILTAHRQLSAMHPIYKLLDPHMRY 292
P+ L+LP +G + +A V S +T + F +AH Q P++ +LDP Y
Sbjct: 153 PMGCVLTLPATGSESNAGAVISR----KTTGDKQAF-HSAHVQ-----PVFAVLDPVYTY 202
Query: 293 TLEINALARKNLINADGVIDASMFKSWRFDKEGLPA---DLIRRGIAVPDPTQPDGLKLL 349
TL + A+GV+DA + ++ + + A D GI + DG K L
Sbjct: 203 TLPPRQV-------ANGVVDAFVHTVEQYVTKPVDAKIHDRFAEGILL--TLIEDGPKAL 253
Query: 350 IEDYPYAADGLLIWSAIE 367
E Y ++W+A +
Sbjct: 254 KEPENYDVRANVMWAATQ 271
>pdb|3DUF|B Chain B, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|D Chain D, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|F Chain F, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|H Chain H, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|B Chain B, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|D Chain D, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|F Chain F, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|H Chain H, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|B Chain B, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|D Chain D, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|F Chain F, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|H Chain H, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 325
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 29/96 (30%)
Query: 342 QPDGLKLLIEDYPYAADGLLIWSAIED--------WVRTYLKSWHNE------SINVGHA 387
Q GLK++I PY A GLLI SAI D ++ Y +S+ E +I +G A
Sbjct: 139 QQPGLKVVIPSTPYDAKGLLI-SAIRDNDPVIFLEHLKLY-RSFRQEVPEGEYTIPIGKA 196
Query: 388 DLRQESWWPTLTNGDDLVFILNTIIWLASAQHAALN 423
D+++E G D+ TII + H +L
Sbjct: 197 DIKRE--------GKDI-----TIIAYGAMVHESLK 219
>pdb|1W85|B Chain B, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|D Chain D, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|F Chain F, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|H Chain H, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W88|B Chain B, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|D Chain D, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|F Chain F, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|H Chain H, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
Length = 324
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 29/96 (30%)
Query: 342 QPDGLKLLIEDYPYAADGLLIWSAIED--------WVRTYLKSWHNE------SINVGHA 387
Q GLK++I PY A GLLI SAI D ++ Y +S+ E +I +G A
Sbjct: 138 QQPGLKVVIPSTPYDAKGLLI-SAIRDNDPVIFLEHLKLY-RSFRQEVPEGEYTIPIGKA 195
Query: 388 DLRQESWWPTLTNGDDLVFILNTIIWLASAQHAALN 423
D+++E G D+ TII + H +L
Sbjct: 196 DIKRE--------GKDI-----TIIAYGAMVHESLK 218
>pdb|3KXF|D Chain D, Crystal Structure Of Sb27 Tcr In Complex With The
'restriction Triad' Mutant Hla-B3508-13mer
pdb|3KXF|G Chain G, Crystal Structure Of Sb27 Tcr In Complex With The
'restriction Triad' Mutant Hla-B3508-13mer
pdb|3KXF|N Chain N, Crystal Structure Of Sb27 Tcr In Complex With The
'restriction Triad' Mutant Hla-B3508-13mer
pdb|3KXF|M Chain M, Crystal Structure Of Sb27 Tcr In Complex With The
'restriction Triad' Mutant Hla-B3508-13mer
Length = 204
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 148 LQAFPPVSNLDPAIYGPQESALKEEHI--IGQLDGMSVQQVLKENKLYVLD 196
LQ FP + N DPA+Y ++S ++ + D + K++ +Y+ D
Sbjct: 110 LQVFPNIQNPDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITD 160
>pdb|2AK4|D Chain D, Crystal Structure Of Sb27 Tcr In Complex With Hla-B3508-
13mer Peptide
pdb|2AK4|I Chain I, Crystal Structure Of Sb27 Tcr In Complex With Hla-B3508-
13mer Peptide
pdb|2AK4|N Chain N, Crystal Structure Of Sb27 Tcr In Complex With Hla-B3508-
13mer Peptide
pdb|2AK4|T Chain T, Crystal Structure Of Sb27 Tcr In Complex With Hla-B3508-
13mer Peptide
Length = 211
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 148 LQAFPPVSNLDPAIYGPQESALKEEHI--IGQLDGMSVQQVLKENKLYVLD 196
LQ FP + N DPA+Y ++S ++ + D + K++ +Y+ D
Sbjct: 113 LQVFPNIQNPDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITD 163
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,305,766
Number of Sequences: 62578
Number of extensions: 612401
Number of successful extensions: 1334
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1170
Number of HSP's gapped (non-prelim): 52
length of query: 443
length of database: 14,973,337
effective HSP length: 102
effective length of query: 341
effective length of database: 8,590,381
effective search space: 2929319921
effective search space used: 2929319921
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)