Query 043147
Match_columns 443
No_of_seqs 245 out of 633
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 13:20:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043147.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043147hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02305 lipoxygenase 100.0 4E-156 1E-160 1267.8 32.2 434 10-443 241-792 (918)
2 PLN02264 lipoxygenase 100.0 1E-152 2E-157 1241.4 29.7 432 10-443 245-794 (919)
3 PLN02337 lipoxygenase 100.0 1E-151 3E-156 1235.4 32.4 433 10-443 183-737 (866)
4 PF00305 Lipoxygenase: Lipoxyg 100.0 2E-146 4E-151 1188.6 16.6 430 10-443 13-557 (667)
5 TIGR03124 ctirate_citX holo-AC 53.1 6.2 0.00013 37.0 0.9 33 14-55 102-134 (165)
6 PF03802 CitX: Apo-citrate lya 44.6 7.9 0.00017 36.4 0.2 36 11-55 101-136 (170)
7 PF11248 DUF3046: Protein of u 25.2 43 0.00093 26.8 1.4 24 167-190 20-43 (63)
8 PF05017 TMP: TMP repeat; Int 17.2 44 0.00096 17.7 0.0 10 363-372 1-10 (11)
9 KOG4844 Mitochondrial ribosoma 14.5 27 0.00059 30.0 -1.9 29 3-31 30-59 (102)
10 PF12369 GnHR_trans: Gonadotro 12.3 82 0.0018 25.7 0.3 12 272-283 1-12 (71)
No 1
>PLN02305 lipoxygenase
Probab=100.00 E-value=4.4e-156 Score=1267.77 Aligned_cols=434 Identities=62% Similarity=1.097 Sum_probs=414.2
Q ss_pred eeccCCCC------CccccccccccCCCCCCCCCCcccccCCCCCCccCcCCCCCCCCCCCCCCccCCCCCCCCccCCCC
Q 043147 10 LLLAGNPS------TKSMVHFVFNDLGNPDRGSEFVRPTLGGEQRPYPRRCRTGRLPTDTDMHAESRIEKPLPMYVPRDE 83 (443)
Q Consensus 10 ~~~~g~~~------~riydy~~yndlg~p~~~~~~~rp~lgg~~~pyprr~rtgr~~~~~d~~~e~~~~~~~~~ylP~de 83 (443)
+.|||||. |||||||||||||+||+|++++||||||++|||||||||||+|+++||.+|||....+++||||||
T Consensus 241 ~~lRGdg~Gerk~~dRiYdYd~YNDLG~Pd~~~~~~RpvLGG~~~PYPRR~RTGR~~t~~Dp~~Esr~~~~~~~YvPrDE 320 (918)
T PLN02305 241 LSLRGNGKGERKPHDRIYDYAPYNDLGNPDKDEDLARPVLGGEEWPYPRRCRTGRPPTKKDPLCESRIEKPHPVYVPRDE 320 (918)
T ss_pred HHhcCCCCCcCCccccccchhhhccCCCCCCCccccCcccCCCCCCCCCcCcCCCCCCCCCCcccccccCCCCcCCCCCC
Confidence 46999996 599999999999999999999999999999999999999999999999999997766678999999
Q ss_pred ccCcccccchhhchHHHHHHHHhHHHHHHhhhccccc-------------------------------------------
Q 043147 84 QFEESKHDAFSAGRLKAALRNLIPLLKASISAHNRDF------------------------------------------- 120 (443)
Q Consensus 84 ~f~~~K~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~f------------------------------------------- 120 (443)
+|+++|++||.++++|+++|.++|.++++++.+..+|
T Consensus 321 ~f~~~K~~~f~~~~lk~~~~~~~p~~~~~~~~~~~~F~~f~~i~~Ly~~g~~l~~~~~~~~~~~p~~~~~~~~i~~~~~~ 400 (918)
T PLN02305 321 TFEEIKRNTFSAGRLKALLHNLIPSIAAALSSSDIPFTCFSDIDKLYNDGILLKTEEPKDIGLNPFLGNFMKQVLSVSER 400 (918)
T ss_pred CcccchhhhHHHHHHHHHHHhhhhHHHHhcCCCCCCCCCHHHHHHHhccCCcCCchhhhhhhcCCchHHHHHHhhhcccc
Confidence 9999999999999999999999999998766544444
Q ss_pred -----------cccccccccHHHHhHHhhCCCcccccccCCCCCCCCCCCccCCCCCccccHHHHhhccCCCcHHHHhhc
Q 043147 121 -----------RDKFAWLQDDEFACQALAGVNPVTIDGLQAFPPVSNLDPAIYGPQESALKEEHIIGQLDGMSVQQVLKE 189 (443)
Q Consensus 121 -----------~~~~~W~~D~eFgrQ~LaG~NP~~I~r~~~~P~~~~ld~~~yg~~~~~it~~~i~~~l~g~tl~~al~~ 189 (443)
.++++|++|+|||||+|||+||++|+||++||++|+|||++||+++|+||+|||+..|+|+||+|||++
T Consensus 401 ~lkf~~P~vi~~d~~~W~~DeeFaRQ~LaGvNP~~I~rl~efP~~skldp~~yG~~~s~iT~e~ve~~L~G~TleeAl~~ 480 (918)
T PLN02305 401 LLKYDIPAVIKRDRFAWLRDNEFARQALAGVNPVNIEILKEFPILSKLDPAVYGPPESALTEELIERELEGMTVEKAIEE 480 (918)
T ss_pred cccCCCcceeecccccccChHHHHHHHHcCCCChheeeccccCCccccCccccCCcCCCcCHHHHHhhcCCCcHHHHHHc
Confidence 457789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEeecCccccccccccccCCCcccccceeEEEeCCCCCeeeEEEEecCCCCC-------------C---c--c--cc
Q 043147 190 NKLYVLDCHHIYLPFLDKINALDGRKAYATRTIFFLNSLGPLKPIAIELSLPPSG-------------P---D--Q--SA 249 (443)
Q Consensus 190 grLfi~Dy~d~~lp~l~~~n~~~~~~~yA~~~Lffl~~~g~L~PiAIqL~~p~~~-------------~---~--~--AK 249 (443)
|||||+||||++|||+.++|.++++++|||+||||++++|+|+||||||++|++. + . | ||
T Consensus 481 ~rLFIlDy~dl~lp~l~~in~l~~~~~YAprtLffL~~dG~L~PlAIqL~~~p~~~~p~~~~VftP~~d~~~~w~W~LAK 560 (918)
T PLN02305 481 KRLFILDYHDMLLPFIEKMNSLPERKAYASRTVFFYSKAGALRPIAIELSLPPTPSSPGNKFVYTHGHDATTHWIWKLAK 560 (918)
T ss_pred CCEEEEechhhhCcccccccccCCcccccceeEEEECCCCCEeeEEEEeeCCCCCCCCCcceeeCCCCCCCCchHHHHHH
Confidence 9999999999999999999999999999999999999999999999999986531 1 1 2 99
Q ss_pred eeeecccccc--------ccccchhhHHHHHhccCCccCchhhhcchhhhhhccccHHHHhcccCCCCcccc--------
Q 043147 250 AHVCSNDARV--------RTHACMEPFILTAHRQLSAMHPIYKLLDPHMRYTLEINALARKNLINADGVIDA-------- 313 (443)
Q Consensus 250 ~~v~~aD~~~--------~TH~v~Epf~iAt~RqLs~~HPI~kLL~PH~r~tl~IN~~AR~~LI~~gG~ie~-------- 313 (443)
|||++||+++ +||++||||+|||+||||++|||||||.||||+||+||++||++|||+||++|+
T Consensus 561 ~~V~~aD~~~HQlisHlLrTHlv~EpfiIAT~RqLs~~HPI~kLL~PHfr~TL~INalAR~~LIn~gGiie~~fspg~~~ 640 (918)
T PLN02305 561 AHVCSNDAGVHQLVNHWLRTHACMEPYIIATHRQLSAMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEACFSPGKYA 640 (918)
T ss_pred HHHHhccHHHHHHHHHHhhHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHHHHHHHHHhccCCCCceeeeeccchhH
Confidence 9999999998 999999999999999999999999999999999999999999999999999998
Q ss_pred -----ccccc-cccCCCCCchHHHhcCCCCCCCCCCCccccCCCCCccchhhHHHHHHHHHHHHHHH-------------
Q 043147 314 -----SMFKS-WRFDKEGLPADLIRRGIAVPDPTQPDGLKLLIEDYPYAADGLLIWSAIEDWVRTYL------------- 374 (443)
Q Consensus 314 -----~~yk~-w~f~~~~lP~dL~~RG~~~~D~~~~~gl~~~l~~YpYrdDgL~iW~aI~~~V~~yv------------- 374 (443)
++|+. |+|++++||+||++|||+++|+++||||++.|||||||||||+||+||++||++||
T Consensus 641 ~elss~aYk~~w~Fd~~~LP~DL~kRGva~~D~~~p~gl~l~ipdYPYrdDGL~IW~AIk~wV~~yV~~YY~~D~~V~~D 720 (918)
T PLN02305 641 MELSSAAYKSMWRFDMEALPADLIRRGMAEEDPSMPCGVRLVIEDYPYAADGLLIWSAIKEWVESYVDHFYSEPNSITSD 720 (918)
T ss_pred HHHHHHHHHhcCcCccccCHHHHHHcCCCccCCCCcccccccCCCCchhhhhHHHHHHHHHHHHHHHHhhCCChhhhccC
Confidence 56886 99999999999999999999999999999999999999999999999999999999
Q ss_pred ---HHHHHHHhhccccccccCCCCCCCCChHHHHHHHhHHhhhcccchhhhccCCCcccccCCCCCCCCCCC
Q 043147 375 ---KSWHNESINVGHADLRQESWWPTLTNGDDLVFILNTIIWLASAQHAALNFGQCPYGGYVPNRPPFDEKW 443 (443)
Q Consensus 375 ---QaW~~Ei~~~G~~d~~~~~~~p~~~T~~eLv~~lT~iIf~aSaqHAAVNfgQy~y~gf~PN~P~~~r~~ 443 (443)
|+||+||+++||+|+++.+|||+|+|++|||++||+|||+|||||||||||||+|+||+||+|++||++
T Consensus 721 ~ELQaW~~Ei~~~Gh~d~kd~~~~p~l~T~~eLi~~lT~IIwtaSaqHAAVNFgQydy~gfvPN~P~~~Rrp 792 (918)
T PLN02305 721 LELQAWWDEIKNKGHYDKRNEPWWPKLNTKEDLSGILTTMIWIASGQHAAINFGQYPFGGYVPNRPTLMRKL 792 (918)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCCcCCcCHHHHHHHHHhhhhhcchhhhhhhcCCcccccccCCCchhhcCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999985
No 2
>PLN02264 lipoxygenase
Probab=100.00 E-value=1.1e-152 Score=1241.38 Aligned_cols=432 Identities=75% Similarity=1.273 Sum_probs=411.8
Q ss_pred eeccCCCC------CccccccccccCCCCCCCCCCcccccCCCCCCccCcCCCCCCCCCCCCCCccCCCCCCCCccCCCC
Q 043147 10 LLLAGNPS------TKSMVHFVFNDLGNPDRGSEFVRPTLGGEQRPYPRRCRTGRLPTDTDMHAESRIEKPLPMYVPRDE 83 (443)
Q Consensus 10 ~~~~g~~~------~riydy~~yndlg~p~~~~~~~rp~lgg~~~pyprr~rtgr~~~~~d~~~e~~~~~~~~~ylP~de 83 (443)
..|||||. |||||||||||||+||+|++++||||||++|||||||||||+|+++||.+|||....+++||||||
T Consensus 245 ~~lRGdg~Gerk~~dRiYdYd~YNDLG~Pd~~~~~~RpvLGG~~~PYPRR~RTGR~~t~~dp~~Esr~~~~~~iYvPrDE 324 (919)
T PLN02264 245 RNLRGDGKGVRKLSDRIYDFDVYNDLGNPDKSRELARPTLGGKKIPYPRRCRTGRLPTDSDMMAESRVEKPLPMYVPRDE 324 (919)
T ss_pred HHhcCCCCCcCCcccchhhhhhhccCCCCCCCccccCcccCCCCCCCCCCCcCCCCCCCCCCcccccccCCCceeCCCCC
Confidence 56999996 599999999999999999999999999999999999999999999999999997766678999999
Q ss_pred ccCcccccchhhchHHHHHHHHhHHHHHHhhhccccc-------------------------------------------
Q 043147 84 QFEESKHDAFSAGRLKAALRNLIPLLKASISAHNRDF------------------------------------------- 120 (443)
Q Consensus 84 ~f~~~K~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~f------------------------------------------- 120 (443)
+|++.|.++|.++++|+++|.++|.++++++.+ +|
T Consensus 325 ~f~~~K~~~f~~~~lk~~~~~~~p~~~~~~~~~--~F~~f~~i~~Ly~~g~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~ 402 (919)
T PLN02264 325 QFEESKQDTFAAGRLKAVLHNLIPSLKASILAE--DFANFGEIDSLYKEGLLLKLGFQDDIFKKFPLPKVVTTLQESSEG 402 (919)
T ss_pred CcccchhhhHHHHHHHHHHHHhhhhhhhhcCCC--CCCCHHHHHHHHhcCCcCCcchhhhHhhcCChHHHHHHhhhcccc
Confidence 999999999999999999999999998765421 11
Q ss_pred -----------cccccccccHHHHhHHhhCCCcccccccCCCCCCCCCCCccCCCCCccccHHHHhhccCCCcHHHHhhc
Q 043147 121 -----------RDKFAWLQDDEFACQALAGVNPVTIDGLQAFPPVSNLDPAIYGPQESALKEEHIIGQLDGMSVQQVLKE 189 (443)
Q Consensus 121 -----------~~~~~W~~D~eFgrQ~LaG~NP~~I~r~~~~P~~~~ld~~~yg~~~~~it~~~i~~~l~g~tl~~al~~ 189 (443)
.++++|++|+|||||+|||+||++|+||++||++|+|||+.||+++|+||++||++.|+|+||+|||++
T Consensus 403 ~lkf~~P~vi~~d~~~W~~DeeFarQ~LaGvNP~~I~rl~e~P~~s~ld~~~yg~~~s~it~e~v~~~L~G~Tl~eAl~~ 482 (919)
T PLN02264 403 LLKYDTPKILSKDKFAWLRDDEFARQAIAGINPVNIERVKVFPPVSNLDPEIYGPQHSALTEDHIIGHLDGLSVQQALEE 482 (919)
T ss_pred cccCCCCceeecChhhccCHHHHHHHHHcCCCchhhhhhhhcCCCCCCCHhhcCCccchhhHHHHhhccCCCcHHHHHHc
Confidence 677899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEeecCccccccccccccCCCcccccceeEEEeCCCCCeeeEEEEecCCCCCC----------------c--c--cc
Q 043147 190 NKLYVLDCHHIYLPFLDKINALDGRKAYATRTIFFLNSLGPLKPIAIELSLPPSGP----------------D--Q--SA 249 (443)
Q Consensus 190 grLfi~Dy~d~~lp~l~~~n~~~~~~~yA~~~Lffl~~~g~L~PiAIqL~~p~~~~----------------~--~--AK 249 (443)
|||||+||||++||+++++|.+++++.|||+||||++++|+|+||||||++|++++ . | ||
T Consensus 483 ~rLFilDy~d~~lp~l~~in~~~g~~~YAprtLFfL~~dG~L~PlAIqL~~p~~~~~~~~~~VftP~~d~~~~w~W~LAK 562 (919)
T PLN02264 483 NRLFMVDYHDIYLPFLDRINALDGRKAYATRTIFFLTRLGTLKPIAIELSLPPSGPNSRSKRVVTPPVDATSNWMWQLAK 562 (919)
T ss_pred CCEEEEeChhhhhhhhhhhccCCCcEeEcceEEEEECCCCCEeeEEEEecCCCCCCCcCcceeECCCCCCCCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999866311 1 1 99
Q ss_pred eeeecccccc--------ccccchhhHHHHHhccCCccCchhhhcchhhhhhccccHHHHhcccCCCCcccc--------
Q 043147 250 AHVCSNDARV--------RTHACMEPFILTAHRQLSAMHPIYKLLDPHMRYTLEINALARKNLINADGVIDA-------- 313 (443)
Q Consensus 250 ~~v~~aD~~~--------~TH~v~Epf~iAt~RqLs~~HPI~kLL~PH~r~tl~IN~~AR~~LI~~gG~ie~-------- 313 (443)
|||++||++| +||+++|||+|||+||||.+|||||||.||||+||+||++||++|||+||++|+
T Consensus 563 ~~V~~aD~~~HQlisHllrTHlv~EpfiIAt~RqLs~~HPI~kLL~PHfr~TL~INalAR~~LIn~gGiid~~f~pg~~~ 642 (919)
T PLN02264 563 AHVCSNDAGVHQLVNHWLRTHACLEPFILAAHRQLSAMHPIFKLLDPHMRYTLEINALARQTLISADGVIESCFTAGQYG 642 (919)
T ss_pred HHHHHHHHHHHHHHHHhccchhhhhhhhhhhcccCCccCcHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeeccchhH
Confidence 9999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred -----cccc-ccccCCCCCchHHHhcCCCCCCCCCCCccccCCCCCccchhhHHHHHHHHHHHHHHH-------------
Q 043147 314 -----SMFK-SWRFDKEGLPADLIRRGIAVPDPTQPDGLKLLIEDYPYAADGLLIWSAIEDWVRTYL------------- 374 (443)
Q Consensus 314 -----~~yk-~w~f~~~~lP~dL~~RG~~~~D~~~~~gl~~~l~~YpYrdDgL~iW~aI~~~V~~yv------------- 374 (443)
.+|+ .|+|++++||+||++|||+++|+++||||++.|||||||||||+||+||++||++||
T Consensus 643 ~elss~aYk~~W~F~~~~LP~DL~~RGv~~~D~~~phgl~l~ipdYPYrdDGL~iW~AIk~~V~~yv~~YY~~D~~V~~D 722 (919)
T PLN02264 643 MEISAAAYKNSWRFDMEGLPADLIRRGMAVPDPTQPHGLKLLIEDYPYANDGLLLWSAIQTWVRTYVERYYPDPSLICTD 722 (919)
T ss_pred HHHHHHHHHhccCCccccCHHHHHHcCCCCCCcccccchhhccCCCcchhhHHHHHHHHHHHHHHHHHHhCCChhhhcCC
Confidence 4688 599999999999999999999999999999999999999999999999999999999
Q ss_pred ---HHHHHHHhhccccccccCCCCCCCCChHHHHHHHhHHhhhcccchhhhccCCCcccccCCCCCCCCCCC
Q 043147 375 ---KSWHNESINVGHADLRQESWWPTLTNGDDLVFILNTIIWLASAQHAALNFGQCPYGGYVPNRPPFDEKW 443 (443)
Q Consensus 375 ---QaW~~Ei~~~G~~d~~~~~~~p~~~T~~eLv~~lT~iIf~aSaqHAAVNfgQy~y~gf~PN~P~~~r~~ 443 (443)
|+||+||++.||+++++.+|||+|+|++|||++||+|||+|||||||||||||+|+||+||+|++||++
T Consensus 723 ~ELQaW~~Ei~~~Gh~d~~d~~~~p~l~T~~eLi~~lT~IIf~aSaqHAAVNFgQydy~gfvPN~P~~~rrp 794 (919)
T PLN02264 723 KELQAWYSESINVGHADLRDADWWPKLSTVDDLVSILTTLIWLASAQHAALNFGQYPYGGYVPNRPPLMRRL 794 (919)
T ss_pred HHHHHHHHHHHhccCCCCcCCCCCCCCCCHHHHHHHHHHHHHhhhhhhhhhhcCcccccccCCCCChHhcCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999975
No 3
>PLN02337 lipoxygenase
Probab=100.00 E-value=1.4e-151 Score=1235.40 Aligned_cols=433 Identities=51% Similarity=0.910 Sum_probs=410.4
Q ss_pred eeccCCCC------CccccccccccCCCCCCCCCCcccccCCC-CCCccCcCCCCCCCCCCCCCCccCCCC-CCCCccCC
Q 043147 10 LLLAGNPS------TKSMVHFVFNDLGNPDRGSEFVRPTLGGE-QRPYPRRCRTGRLPTDTDMHAESRIEK-PLPMYVPR 81 (443)
Q Consensus 10 ~~~~g~~~------~riydy~~yndlg~p~~~~~~~rp~lgg~-~~pyprr~rtgr~~~~~d~~~e~~~~~-~~~~ylP~ 81 (443)
..|||||. |||||||||||||+||+|++++||||||+ +|||||||||||+|+++||.+|||... ++++||||
T Consensus 183 ~~lrG~g~gerk~~dRiYdyd~YnDlg~pd~~~~~~RpvLGg~~~~pyPRR~rTgr~~t~~dp~~esr~~~~~~~~yvPr 262 (866)
T PLN02337 183 VNLRGDGKGELKEWDRVYDYDYYNDLGDPDKGNPYARPVLGGSQEYPYPRRGRTGRKPTKTDPNSESRLPLLSLNIYVPR 262 (866)
T ss_pred HHhcCCCCCCCCcccchhhhhhhccCCCCCCCccccCccCCCCCCCCCCCcccCCCCCCCCCCccccccccCCCCcccCC
Confidence 46999996 59999999999999999999999999998 799999999999999999999999654 45689999
Q ss_pred CCccCcccccchhhchHHHHHHHHhHHHHHHhhhccccc-----------------------------------------
Q 043147 82 DEQFEESKHDAFSAGRLKAALRNLIPLLKASISAHNRDF----------------------------------------- 120 (443)
Q Consensus 82 de~f~~~K~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~f----------------------------------------- 120 (443)
||+|++.|.+||.++++|+++|.++|.++++++++..+|
T Consensus 263 DE~f~~~k~~~f~~~~l~~~~~~~~p~~~~~~~~~~~~f~~f~~i~~ly~~g~~lp~~~~~~~~~~~~p~~~~~~~~~~~ 342 (866)
T PLN02337 263 DERFGHLKMSDFLAYALKAIAQVLVPELEALFDKTPNEFDSFEDVLKLYEGGIKLPNGPLLEELRKNIPLEMLKELLRTD 342 (866)
T ss_pred CCCcccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhhcCCCCCCchHHHHhhhcChHHHHHHHHhhc
Confidence 999999999999999999999999999998876555454
Q ss_pred --------------cccccccccHHHHhHHhhCCCcccccccCCCCCCCCCCCccCCCCCccccHHHHhhccCCCcHHHH
Q 043147 121 --------------RDKFAWLQDDEFACQALAGVNPVTIDGLQAFPPVSNLDPAIYGPQESALKEEHIIGQLDGMSVQQV 186 (443)
Q Consensus 121 --------------~~~~~W~~D~eFgrQ~LaG~NP~~I~r~~~~P~~~~ld~~~yg~~~~~it~~~i~~~l~g~tl~~a 186 (443)
.++++|++|+|||||+|||+||++|+||++||++|+|||++||+++|+||++||++.|+|+||+||
T Consensus 343 ~~~~l~fp~P~vi~~d~~~W~~DeeFarQ~LaG~NP~~I~rl~~~P~~~~ld~~~yg~~~s~iT~e~v~~~L~g~Tl~eA 422 (866)
T PLN02337 343 GEYLLKFPMPQVIKEDKSAWRTDEEFAREMLAGVNPVVIRRLTEFPPKSKLDPKKYGDQNSSITEEHIEKNLEGLTVQEA 422 (866)
T ss_pred ccccccCCCCceeecccccccCHHHHHHHHhcCCCChheeecccCCCcccCChhhcCCccCccCHHHHHhccCCccHHHH
Confidence 567899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCcEEEeecCccccccccccccCCCcccccceeEEEeCCCCCeeeEEEEecCCCC--------------C-C---c--
Q 043147 187 LKENKLYVLDCHHIYLPFLDKINALDGRKAYATRTIFFLNSLGPLKPIAIELSLPPS--------------G-P---D-- 246 (443)
Q Consensus 187 l~~grLfi~Dy~d~~lp~l~~~n~~~~~~~yA~~~Lffl~~~g~L~PiAIqL~~p~~--------------~-~---~-- 246 (443)
|++|||||+||||.+|||+.++|...++ .|||+||||++++|+|+||||||++|+. . + .
T Consensus 423 l~~~rLfi~Dy~d~~lp~l~~in~~~~k-~yA~~tLffl~~dG~L~PlAIqL~~p~~~~~~~g~~~~VfTP~~~~~~~~~ 501 (866)
T PLN02337 423 LEKNRLFILDHHDALMPYLRRINSTSTK-TYATRTLLFLKDDGTLKPLAIELSLPHPQGDKFGAVSKVYTPAEDGVEGSV 501 (866)
T ss_pred HHcCCEEEEecchhcCcccccccCCCCc-cccceeEEEECCCCCEeEEEEEeccCCCCcccCCCCCCeECCCCCCCCcch
Confidence 9999999999999999999999986554 9999999999999999999999986431 0 1 1
Q ss_pred c--cceeeecccccc--------ccccchhhHHHHHhccCCccCchhhhcchhhhhhccccHHHHhcccCCCCcccc---
Q 043147 247 Q--SAAHVCSNDARV--------RTHACMEPFILTAHRQLSAMHPIYKLLDPHMRYTLEINALARKNLINADGVIDA--- 313 (443)
Q Consensus 247 ~--AK~~v~~aD~~~--------~TH~v~Epf~iAt~RqLs~~HPI~kLL~PH~r~tl~IN~~AR~~LI~~gG~ie~--- 313 (443)
| ||+||++||+++ +||+++|||+|||+||||++|||||||.||||+||+||++||++||++||++|+
T Consensus 502 W~lAK~~v~~aD~~~HqlisHllrTHlv~EpfiIAt~RqLs~~HPI~kLL~PHfr~Tl~IN~~AR~~LI~~gGiid~~~~ 581 (866)
T PLN02337 502 WQLAKAYVAVNDSGYHQLISHWLNTHAVIEPFVIATNRQLSVLHPIHKLLHPHFRDTMNINALARQILINAGGILESTVF 581 (866)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHHHhccCCCcCcHHHHHHHHHHHHHHHHHHHHHheeCCCCeeeeeec
Confidence 2 999999999997 999999999999999999999999999999999999999999999999999998
Q ss_pred ----------ccccccccCCCCCchHHHhcCCCCCCCCCCCccccCCCCCccchhhHHHHHHHHHHHHHHH---------
Q 043147 314 ----------SMFKSWRFDKEGLPADLIRRGIAVPDPTQPDGLKLLIEDYPYAADGLLIWSAIEDWVRTYL--------- 374 (443)
Q Consensus 314 ----------~~yk~w~f~~~~lP~dL~~RG~~~~D~~~~~gl~~~l~~YpYrdDgL~iW~aI~~~V~~yv--------- 374 (443)
++|+.|+|++++||+||++|||+++|+++|||+++.|||||||||||+||+||++||++||
T Consensus 582 ~g~~~~els~~~yk~w~F~~~~LP~DL~~RGv~~~D~~~p~g~~l~i~dYPYrdDGL~iW~AI~~~V~~yv~~YY~~D~~ 661 (866)
T PLN02337 582 PGKYALEMSSVVYKNWNFTEQALPADLIKRGVAVEDPSSPHGVRLLIEDYPYAVDGLEIWSAIETWVKEYCAFYYPTDDM 661 (866)
T ss_pred cchhHHHHHHHHHhcCCcccccCHHHHHHcCCCccccccccccccccCCCcchhhHHHHHHHHHHHHHHHHHhhCCchHh
Confidence 5789999999999999999999999999999999999999999999999999999999999
Q ss_pred -------HHHHHHHhhccccccccCCCCCCCCChHHHHHHHhHHhhhcccchhhhccCCCcccccCCCCCCCCCCC
Q 043147 375 -------KSWHNESINVGHADLRQESWWPTLTNGDDLVFILNTIIWLASAQHAALNFGQCPYGGYVPNRPPFDEKW 443 (443)
Q Consensus 375 -------QaW~~Ei~~~G~~d~~~~~~~p~~~T~~eLv~~lT~iIf~aSaqHAAVNfgQy~y~gf~PN~P~~~r~~ 443 (443)
|+||+||+++||+++++.+|||+|+|++|||++||+|||+|||||||||||||+|+||+||+|++||++
T Consensus 662 V~~D~ELQaW~~Ei~~~G~gd~k~~~~~p~l~T~~eLv~~lT~iIf~aSaqHAAVNfgQy~y~gfvPN~P~~~r~~ 737 (866)
T PLN02337 662 VQGDTELQSWWKEVREEGHGDLKDEPWWPKMQTVAELIESCTIIIWIASALHAAVNFGQYPYAGYLPNRPTVSRRF 737 (866)
T ss_pred hccCHHHHHHHHHHHhcCCCCccCCCCCCccCCHHHHHHHHHhhhhhcchhhhhhhcCCcccccccCCCchhhcCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999985
No 4
>PF00305 Lipoxygenase: Lipoxygenase; InterPro: IPR013819 Lipoxygenases (1.13.11.- from EC) are a class of iron-containing dioxygenases which catalyses the hydroperoxidation of lipids, containing a cis,cis-1,4-pentadiene structure. They are common in plants where they may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. In mammals a number of lipoxygenases isozymes are involved in the metabolism of prostaglandins and leukotrienes []. Sequence data is available for the following lipoxygenases: Plant lipoxygenases (1.13.11.12 from EC, IPR001246 from INTERPRO). Plants express a variety of cytosolic isozymes as well as what seems to be a chloroplast isozyme []. Mammalian arachidonate 5-lipoxygenase (1.13.11.34 from EC, IPR001885 from INTERPRO). Mammalian arachidonate 12-lipoxygenase (1.13.11.31 from EC, IPR001885 from INTERPRO). Mammalian erythroid cell-specific 15-lipoxygenase (1.13.11.33 from EC, IPR001885 from INTERPRO). The iron atom in lipoxygenases is bound by four ligands, three of which are histidine residues []. Six histidines are conserved in all lipoxygenase sequences, five of them are found clustered in a stretch of 40 amino acids. This region contains two of the three iron-ligands; the other histidines have been shown [] to be important for the activity of lipoxygenases. This entry represents the C-terminal region of these proteins.; GO: 0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 3FG3_D 3FG1_C 3FG4_D 3DY5_A 2FNQ_B 2P0M_A 3RDE_B 2IUJ_A 1RRL_B 1JNQ_A ....
Probab=100.00 E-value=1.9e-146 Score=1188.60 Aligned_cols=430 Identities=55% Similarity=0.940 Sum_probs=374.4
Q ss_pred eeccCCCCC------ccccccccccCCCCCCCCCCcccccCCC-CCCccCcCCCCCCCCCCCCCCccCCCCCCCCccCCC
Q 043147 10 LLLAGNPST------KSMVHFVFNDLGNPDRGSEFVRPTLGGE-QRPYPRRCRTGRLPTDTDMHAESRIEKPLPMYVPRD 82 (443)
Q Consensus 10 ~~~~g~~~~------riydy~~yndlg~p~~~~~~~rp~lgg~-~~pyprr~rtgr~~~~~d~~~e~~~~~~~~~ylP~d 82 (443)
+.|||||++ ||||||||||||+||++++++||||||+ ++||||||||||+|+++||.+|+| +.++|||||
T Consensus 13 ~~lrG~g~gerk~~dRiYdYd~YnDLG~pd~~~~~~RpvlGgs~~~PYPRR~RTGr~~~~~Dp~sEsr---~~~~YVPRD 89 (667)
T PF00305_consen 13 KNLRGDGTGERKEWDRIYDYDVYNDLGNPDKGPELARPVLGGSKEFPYPRRCRTGRPPTKTDPKSESR---SGDIYVPRD 89 (667)
T ss_dssp HHHHTTS-S---TT-----EE-B-SSSBGGGTGCG----BSSSSSS----EE----SBESSCTTSBGC----SSGGS-GG
T ss_pred HHhcCCCCCccccccceeeeecccCCCCCCCCCcCCCCCCCCCCCCCCCccCCCCCCCCCCCccccCc---cccccCCcc
Confidence 579999974 9999999999999999999999999996 999999999999999999999999 446999999
Q ss_pred CccCcccccchhhchHHHHHHHHhHHHHHHhhhccccc------------------------------------------
Q 043147 83 EQFEESKHDAFSAGRLKAALRNLIPLLKASISAHNRDF------------------------------------------ 120 (443)
Q Consensus 83 e~f~~~K~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~f------------------------------------------ 120 (443)
|+|++.|+++|.++++|++++.++|.+++++.....+|
T Consensus 90 E~F~~~K~~dF~~~~lks~~~~llP~L~~~~~~~~~eF~sF~dId~LY~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (667)
T PF00305_consen 90 ERFSEVKQSDFLANALKSLLHALLPALKSLFDDTPNEFDSFEDIDDLYEEGIKLPTDLLKKLIPLELLKELFRTDGENIL 169 (667)
T ss_dssp GS-SCSSGGGHHHHHHHHHHHTHHHHHHHHTTSSTSSCSSHHHHHHHHTTTEE--HHHHCCHTTSTTCCTTSBETSSSEE
T ss_pred ccccchhHHHHHHHHHHHHHHhHHHHHHHHhcccCcccCCHHHHHHHHhccccchhhHhhhcCcHHHHHHHHhhccccee
Confidence 99999999999999999999999999998755444444
Q ss_pred ---------cccccccccHHHHhHHhhCCCcccccccCCCCCCCCCCCccCCCCCccccHHHHhhccCCCcHHHHhhcCc
Q 043147 121 ---------RDKFAWLQDDEFACQALAGVNPVTIDGLQAFPPVSNLDPAIYGPQESALKEEHIIGQLDGMSVQQVLKENK 191 (443)
Q Consensus 121 ---------~~~~~W~~D~eFgrQ~LaG~NP~~I~r~~~~P~~~~ld~~~yg~~~~~it~~~i~~~l~g~tl~~al~~gr 191 (443)
.+.++|++|+|||||+|||+||++|+||+++|++|+|||++||+++|++|++||+..|+|+||++||++||
T Consensus 170 kf~~p~v~~~~~~~W~~DeeFarQ~LaG~NP~~I~r~~e~P~~~~ld~~~yg~~~s~it~e~i~~~l~g~tl~~al~~~r 249 (667)
T PF00305_consen 170 KFPTPQVIERDRFAWRTDEEFARQRLAGVNPVVIRRLTEFPPKSKLDPAIYGDQESPITDEHIEPQLEGLTLEEALKDGR 249 (667)
T ss_dssp B----HHHHCHHHHTTSHHHHHHHHHHSSSTTSEEE-SSSSTTS-SSHHCCTSSB-STTHHHHHHHCHCS-HHHHHHTT-
T ss_pred eCCCCccchhhhhccCChHHHHHHHHcCCCchHhhccccCCccccccHhhcCCccCCchHHHhhhccCCCcHHHHHhcCC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCccccccccccccCCCcccccceeEEEeCCCCCeeeEEEEecCCCCC-------------Cc-----c--ccee
Q 043147 192 LYVLDCHHIYLPFLDKINALDGRKAYATRTIFFLNSLGPLKPIAIELSLPPSG-------------PD-----Q--SAAH 251 (443)
Q Consensus 192 Lfi~Dy~d~~lp~l~~~n~~~~~~~yA~~~Lffl~~~g~L~PiAIqL~~p~~~-------------~~-----~--AK~~ 251 (443)
|||+||+++++|+++++|. .+++.|||+||||++++|+|+||||||++|++. +. | ||+|
T Consensus 250 Lfi~Dy~~~~~~~~~~i~~-~~~~~~A~~~Lf~l~~~g~L~PlAIqL~~p~~~~~~~~~~v~tP~~d~~~~~~W~lAK~~ 328 (667)
T PF00305_consen 250 LFILDYHDLFGPYLNKINE-KGRYAYAPRALFFLNPDGTLKPLAIQLSQPGPEGPPQFNPVFTPSDDGTEDWLWLLAKAH 328 (667)
T ss_dssp EEEEEEGGGTTHHHHHHTT-CCGBG-EEEEEEEEETTSEEEEEEEECSECBTTCS-EEEEEE-TTSSSHHHHHHHHHHHH
T ss_pred eEEEeehhhcccccccccc-CCcEeccceeEEEEcCCCCEeeeEEeccCCCCcccCccceeeecCCCCccchHHHHHHHH
Confidence 9999999999999999998 788999999999999999999999999876421 11 2 9999
Q ss_pred eecccccc--------ccccchhhHHHHHhccCCccCchhhhcchhhhhhccccHHHHhcccCCCCcccc----------
Q 043147 252 VCSNDARV--------RTHACMEPFILTAHRQLSAMHPIYKLLDPHMRYTLEINALARKNLINADGVIDA---------- 313 (443)
Q Consensus 252 v~~aD~~~--------~TH~v~Epf~iAt~RqLs~~HPI~kLL~PH~r~tl~IN~~AR~~LI~~gG~ie~---------- 313 (443)
|++||+++ +||+|||||+|||+||||++|||||||.||||+||+||++||++||++||++|+
T Consensus 329 v~~aD~~~HqlisHll~THlv~Ep~~vAt~R~Ls~~HPi~kLL~PH~r~tl~IN~~Ar~~Li~~gG~id~~~~~g~~~~~ 408 (667)
T PF00305_consen 329 VQVADANYHQLISHLLRTHLVMEPFIVATHRQLSEMHPIYKLLHPHFRYTLAINALARQSLINAGGIIDKTFSPGKYGME 408 (667)
T ss_dssp HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHS-TTSHHHHHHGGGGTTHHHHHHHHHHHTSSTTSHHHHHSTTTTTHHH
T ss_pred HHhhhHHHHHHHhhhhhhhhhhHHHHHHHhcCCCCCCCceeeccceeecchhhhHHHHHHhhccCcccccccchhhHHHH
Confidence 99999988 999999999999999999999999999999999999999999999999999999
Q ss_pred ---ccccccccCCCCCchHHHhcCCCCCCCCCCCccccCCCCCccchhhHHHHHHHHHHHHHHH----------------
Q 043147 314 ---SMFKSWRFDKEGLPADLIRRGIAVPDPTQPDGLKLLIEDYPYAADGLLIWSAIEDWVRTYL---------------- 374 (443)
Q Consensus 314 ---~~yk~w~f~~~~lP~dL~~RG~~~~D~~~~~gl~~~l~~YpYrdDgL~iW~aI~~~V~~yv---------------- 374 (443)
.+|+.|+|++++||+||++|||+++|++++||+++.|||||||+|||+||+||++||++||
T Consensus 409 l~~~~y~~~~f~~~~lP~dL~~RG~~~~D~~~~~g~~~~l~~YpY~dDgl~iW~aI~~~V~~~v~~yY~~d~~V~~D~EL 488 (667)
T PF00305_consen 409 LSSRAYKNWRFDDQALPADLKKRGMAVDDPSSPHGLRLVLPDYPYRDDGLLIWDAIKKFVSDYVNLYYKSDEAVANDTEL 488 (667)
T ss_dssp HHHHHHTT--GGGGSHHHHHHHTTSEEE-TTSTTSEETTSTT-HHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHT-HHH
T ss_pred HHHHHHhhCCcccccCHHHHHhhcccccccccccccccccccCChhHHHHHHHHHHHHHHHHhhhhhcCCcceeCcCHHH
Confidence 6789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccccccCCCCCCCCChHHHHHHHhHHhhhcccchhhhccCCCcccccCCCCCCCCCCC
Q 043147 375 KSWHNESINVGHADLRQESWWPTLTNGDDLVFILNTIIWLASAQHAALNFGQCPYGGYVPNRPPFDEKW 443 (443)
Q Consensus 375 QaW~~Ei~~~G~~d~~~~~~~p~~~T~~eLv~~lT~iIf~aSaqHAAVNfgQy~y~gf~PN~P~~~r~~ 443 (443)
|+||+||+++||+++++.+||++|+|+++||++||+|||+||+||||||||||+|+||+||+|++||++
T Consensus 489 QaW~~Ei~~~G~~~~~~~~~~~~i~t~~~Li~~lT~iI~~~S~qHaAVNfgQ~~y~g~~PN~P~~~r~~ 557 (667)
T PF00305_consen 489 QAWWNEIRTVGHGDKKDEGFPPKIKTRDELIDILTTIIFTASAQHAAVNFGQYDYYGFVPNRPTALRRP 557 (667)
T ss_dssp HHHHHHHHHTTTTGGTTGTTSSSSSSHHHHHHHHHHHHHHHTHHHHHHHTTHHHHHSSGGGS-S-BSSS
T ss_pred HHHHHHHhcccccCcCcCCCCCCCCCHHHHHHHHHHHeeecchhhhhhcccccceeeecCCCChhhccc
Confidence 999999999999999998888899999999999999999999999999999999999999999999963
No 5
>TIGR03124 ctirate_citX holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems.
Probab=53.11 E-value=6.2 Score=37.04 Aligned_cols=33 Identities=33% Similarity=0.623 Sum_probs=22.7
Q ss_pred CCCCCccccccccccCCCCCCCCCCcccccCCCCCCccCcCC
Q 043147 14 GNPSTKSMVHFVFNDLGNPDRGSEFVRPTLGGEQRPYPRRCR 55 (443)
Q Consensus 14 g~~~~riydy~~yndlg~p~~~~~~~rp~lgg~~~pyprr~r 55 (443)
..+-+|.+|-|||+ ++ |..+.|--|| +| ||||=
T Consensus 102 ~hplGRL~DlDV~~----~~-g~~iSR~~lg---~~-~R~Cl 134 (165)
T TIGR03124 102 SHPLGRLWDIDVLD----AD-GKSLSRTDLG---LP-PRKCL 134 (165)
T ss_pred CCchhhheeheeec----CC-CCCcCHHHcC---CC-CCeee
Confidence 34457999999996 22 3356677776 44 88873
No 6
>PF03802 CitX: Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase; InterPro: IPR005551 Members of this protein family are annotated as CitX, containing the CitX domain, the domain is also found in the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25 from EC), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems.; GO: 0051191 prosthetic group biosynthetic process
Probab=44.65 E-value=7.9 Score=36.36 Aligned_cols=36 Identities=28% Similarity=0.428 Sum_probs=24.2
Q ss_pred eccCCCCCccccccccccCCCCCCCCCCcccccCCCCCCccCcCC
Q 043147 11 LLAGNPSTKSMVHFVFNDLGNPDRGSEFVRPTLGGEQRPYPRRCR 55 (443)
Q Consensus 11 ~~~g~~~~riydy~~yndlg~p~~~~~~~rp~lgg~~~pyprr~r 55 (443)
+=-..+.+|.+|-|||+.- |..+.|--||-. ||||=
T Consensus 101 iEe~hplGRL~DiDV~~~~-----g~~iSR~~lg~~----~R~Cl 136 (170)
T PF03802_consen 101 IEESHPLGRLFDIDVLDPD-----GKQISREDLGLP----PRRCL 136 (170)
T ss_pred HHccCcchheEEEeeecCC-----CCccCHHHcCCC----CCccc
Confidence 3345566799999999433 345678888732 77774
No 7
>PF11248 DUF3046: Protein of unknown function (DUF3046); InterPro: IPR021408 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=25.17 E-value=43 Score=26.82 Aligned_cols=24 Identities=21% Similarity=0.548 Sum_probs=20.6
Q ss_pred ccccHHHHhhccCCCcHHHHhhcC
Q 043147 167 SALKEEHIIGQLDGMSVQQVLKEN 190 (443)
Q Consensus 167 ~~it~~~i~~~l~g~tl~~al~~g 190 (443)
..+..+|+-..|+|.|..|||++|
T Consensus 20 ~~la~dhvL~~LGgrT~~eAL~~G 43 (63)
T PF11248_consen 20 RSLARDHVLSELGGRTAAEALEAG 43 (63)
T ss_pred HHHHHhcchhhcCCcCHHHHHHcC
Confidence 356678888899999999999987
No 8
>PF05017 TMP: TMP repeat; InterPro: IPR007713 This short repeat consists of the motif WXXh where X can be any residue and h is a hydrophobic residue. The repeat is named TMP after its occurrence in the tape measure protein (TMP). Tape measure protein is a component of phage tail and probably forms a beta-helix. Truncated forms of TMP lead to shortened tail fibres []. This repeat is also found in non-phage proteins where it may play a structural role.
Probab=17.21 E-value=44 Score=17.70 Aligned_cols=10 Identities=20% Similarity=0.790 Sum_probs=7.5
Q ss_pred HHHHHHHHHH
Q 043147 363 WSAIEDWVRT 372 (443)
Q Consensus 363 W~aI~~~V~~ 372 (443)
|+.|++++++
T Consensus 1 Wn~Ik~~~s~ 10 (11)
T PF05017_consen 1 WNGIKSFFSG 10 (11)
T ss_pred CchHHHHhhc
Confidence 7888887764
No 9
>KOG4844 consensus Mitochondrial ribosomal protein S27 [Translation, ribosomal structure and biogenesis]
Probab=14.52 E-value=27 Score=29.98 Aligned_cols=29 Identities=21% Similarity=0.123 Sum_probs=24.5
Q ss_pred ccceeeeeeccCCCCCccc-cccccccCCC
Q 043147 3 TTTKIVVLLLAGNPSTKSM-VHFVFNDLGN 31 (443)
Q Consensus 3 ~~~~~~~~~~~g~~~~riy-dy~~yndlg~ 31 (443)
|..|||+.-|.|+.----| +||.||.|-+
T Consensus 30 tg~Kil~~~LkG~kvasyYp~~~~~r~l~t 59 (102)
T KOG4844|consen 30 TGHKILRKKLKGDKVASYYPPYDIKRELPT 59 (102)
T ss_pred chhHHHHHHhccchHhhhcchHHhhhhhhh
Confidence 5679999999999988888 9999887653
No 10
>PF12369 GnHR_trans: Gonadotropin hormone receptor transmembrane region ; InterPro: IPR024635 This domain represents the transmembrane region of follicular stimulating hormone and luteinizing hormone receptors- the two major gonadotropin hormone receptors. This domain is found in eukaryotes, and is approximately 70 amino acids in length. There are two completely conserved C residues that may be functionally important. The transmembrane region is conserved between the two different receptors, while the extracellular ligand binding domains are less well conserved []. The follicular stimulating hormone and luteinizing hormone receptors are G protein-coupled receptors involved in development and maturation of germ cells in both fecund genders.
Probab=12.27 E-value=82 Score=25.73 Aligned_cols=12 Identities=58% Similarity=1.079 Sum_probs=10.7
Q ss_pred HhccCCccCchh
Q 043147 272 AHRQLSAMHPIY 283 (443)
Q Consensus 272 t~RqLs~~HPI~ 283 (443)
|+||.|..|||.
T Consensus 1 ~~R~~s~~hpic 12 (71)
T PF12369_consen 1 THRQISELHPIC 12 (71)
T ss_pred Cccccccccccc
Confidence 689999999995
Done!