BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043149
(344 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 62/114 (54%), Gaps = 8/114 (7%)
Query: 20 GVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRY 79
G TPLH A G+++++ L + + + T LH+AAK LE++E +L +
Sbjct: 47 GDTPLHLAARVGHLEIVEVLLKNGAD-VNALDFSGSTPLHLAAKRGHLEIVEVLLKYGAD 105
Query: 80 VNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDM 133
VN DD + G+T LH++ H++IV +++K D +NA++ TA D+
Sbjct: 106 VNADDTI------GSTPLHLAADTGHLEIVEVLLKYGAD-VNAQDKFGKTAFDI 152
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 70/144 (48%), Gaps = 13/144 (9%)
Query: 13 VRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLET 72
V +G TPLHY A++G+ +++ K L + + T LH AAK E+++
Sbjct: 30 VNASDSDGRTPLHYAAKEGHKEIV-KLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKL 88
Query: 73 MLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMD 132
++ VN K+ +G T LH + H +IV+L++ + D +N +S T +D
Sbjct: 89 LISKGADVNA------KDSDGRTPLHYAAKEGHKEIVKLLISKGAD-VNTSDSDGRTPLD 141
Query: 133 MVKFHLQTKPEFEELKSMVRKAGG 156
+ + H EE+ ++ K GG
Sbjct: 142 LAREHGN-----EEIVKLLEKQGG 160
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 8/105 (7%)
Query: 27 VAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDIL 86
AE GN D + K L + T LH AAK E+++ ++ VN
Sbjct: 11 AAENGNKDRV-KDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNA---- 65
Query: 87 NWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAM 131
K+ +G T LH + H +IV+L++ + D +NA++S T +
Sbjct: 66 --KDSDGRTPLHYAAKEGHKEIVKLLISKGAD-VNAKDSDGRTPL 107
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 67/124 (54%), Gaps = 14/124 (11%)
Query: 13 VRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKE---TALHVAAKYDRLEV 69
V + ++G TPLH A +G+++++ L A + V + + T LH+AA+ LE+
Sbjct: 40 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD----VNAKDKDGYTPLHLAAREGHLEI 95
Query: 70 LETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNT 129
+E +L VN K+ +G T LH++ H++IV +++K D +NA++ T
Sbjct: 96 VEVLLKAGADVN------AKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAQDKFGKT 148
Query: 130 AMDM 133
A D+
Sbjct: 149 AFDI 152
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 12/100 (12%)
Query: 56 TALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKR 115
T LH+AA+ LE++E +L VN K+ +G T LH++ H++IV +++K
Sbjct: 49 TPLHLAAREGHLEIVEVLLKAGADVN------AKDKDGYTPLHLAAREGHLEIVEVLLKA 102
Query: 116 VRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAG 155
D +NA++ T + HL + E+ ++ KAG
Sbjct: 103 GAD-VNAKDKDGYTPL-----HLAAREGHLEIVEVLLKAG 136
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 86 LNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFE 145
+N K+ +G T LH++ H++IV +++K D +NA++ T + HL +
Sbjct: 40 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPL-----HLAAREGHL 93
Query: 146 ELKSMVRKAG 155
E+ ++ KAG
Sbjct: 94 EIVEVLLKAG 103
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 64/114 (56%), Gaps = 8/114 (7%)
Query: 20 GVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRY 79
G TPLH A G+++++ L + T+ T LH+AA + LE++E +L
Sbjct: 47 GWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTL-GSTPLHLAAHFGHLEIVEVLL----- 100
Query: 80 VNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDM 133
N D+ N K+D G T LH++ +R H++IV +++K D +NA++ TA D+
Sbjct: 101 KNGADV-NAKDDNGITPLHLAANRGHLEIVEVLLKYGAD-VNAQDKFGKTAFDI 152
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 68/138 (49%), Gaps = 13/138 (9%)
Query: 19 EGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLR 78
+G TPLHY AE G+ +++ L+ + + + + T LH AA+ E+++ +L
Sbjct: 36 DGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGR-TPLHYAAENGHKEIVKLLLSKGA 94
Query: 79 YVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHL 138
N K+ +G T LH + H +IV+L++ + D N +S T +D+ + H
Sbjct: 95 DPNA------KDSDGRTPLHYAAENGHKEIVKLLLSKGADP-NTSDSDGRTPLDLAREHG 147
Query: 139 QTKPEFEELKSMVRKAGG 156
EE+ ++ K GG
Sbjct: 148 N-----EEIVKLLEKQGG 160
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 87 NWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAM 131
N + +G T LH + H +IV+L++ + D NA++S T +
Sbjct: 31 NASDSDGRTPLHYAAENGHKEIVKLLLSKGADP-NAKDSDGRTPL 74
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 70/144 (48%), Gaps = 13/144 (9%)
Query: 13 VRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLET 72
V +G TPLH AE G+ +++ L+ + + + K T LH+AA+ EV++
Sbjct: 30 VNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGK-TPLHLAAENGHKEVVKL 88
Query: 73 MLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMD 132
+L N K+ +G T LH++ H ++V+L++ + D N +S T +D
Sbjct: 89 LLSQGADPNA------KDSDGKTPLHLAAENGHKEVVKLLLSQGADP-NTSDSDGRTPLD 141
Query: 133 MVKFHLQTKPEFEELKSMVRKAGG 156
+ + H EE+ ++ K GG
Sbjct: 142 LAREHGN-----EEVVKLLEKQGG 160
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 8/108 (7%)
Query: 27 VAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDIL 86
AE GN D + L + + K T LH+AA+ EV++ +L N
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGK-TPLHLAAENGHKEVVKLLLSQGADPNA---- 65
Query: 87 NWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMV 134
K+ +G T LH++ H ++V+L++ + D NA++S T + +
Sbjct: 66 --KDSDGKTPLHLAAENGHKEVVKLLLSQGADP-NAKDSDGKTPLHLA 110
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 76/145 (52%), Gaps = 19/145 (13%)
Query: 13 VRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKE---TALHVAAKYDRLEV 69
V + ++G TPLH A +G+++++ L A + V + + T LH+AA+ LE+
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD----VNAKDKDGYTPLHLAAREGHLEI 83
Query: 70 LETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNT 129
+E +L D +N K+ +G T LH++ H++IV +++K D +NA++ T
Sbjct: 84 VEVLL----KAGAD--VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAQDKFGKT 136
Query: 130 AMDMVKFHLQTKPEFEELKSMVRKA 154
F L + E++ +++KA
Sbjct: 137 -----PFDLAIREGHEDIAEVLQKA 156
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 12/100 (12%)
Query: 56 TALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKR 115
T LH+AA+ LE++E +L D +N K+ +G T LH++ H++IV +++K
Sbjct: 37 TPLHLAAREGHLEIVEVLL----KAGAD--VNAKDKDGYTPLHLAAREGHLEIVEVLLKA 90
Query: 116 VRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAG 155
D +NA++ T + HL + E+ ++ KAG
Sbjct: 91 GAD-VNAKDKDGYTPL-----HLAAREGHLEIVEVLLKAG 124
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 86 LNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFE 145
+N K+ +G T LH++ H++IV +++K D +NA++ T + HL +
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPL-----HLAAREGHL 81
Query: 146 ELKSMVRKAG 155
E+ ++ KAG
Sbjct: 82 EIVEVLLKAG 91
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 58 LHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVR 117
+H AA+ +L+ L+T+L + VN++D +EGN LH++ H+++V +VK
Sbjct: 74 IHDAARAGQLDTLQTLLEFQADVNIED------NEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Query: 118 DQINARNSKDNTAMDMVKFH 137
+ RN K +TA D+ + +
Sbjct: 128 SNVGHRNHKGDTACDLARLY 147
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 5 LIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKY 64
L++F + V ++ EG PLH A++G++ ++ + ++ + +TA +A Y
Sbjct: 89 LLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLY 147
Query: 65 DRLEVLETM 73
R EV+ M
Sbjct: 148 GRNEVVSLM 156
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 66/125 (52%), Gaps = 14/125 (11%)
Query: 13 VRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKE---TALHVAAKYDRLEV 69
V + ++G TPLH A +G+++++ L A + V + + T LH+AA+ LE+
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD----VNAKDKDGYTPLHLAAREGHLEI 83
Query: 70 LETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNT 129
+E +L VN K+ +G T LH++ H++IV +++K D +NA++ T
Sbjct: 84 VEVLLKAGADVN------AKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAQDKFGKT 136
Query: 130 AMDMV 134
D+
Sbjct: 137 PFDLA 141
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 12/100 (12%)
Query: 56 TALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKR 115
T LH+AA+ LE++E +L VN K+ +G T LH++ H++IV +++K
Sbjct: 37 TPLHLAAREGHLEIVEVLLKAGADVN------AKDKDGYTPLHLAAREGHLEIVEVLLKA 90
Query: 116 VRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAG 155
D +NA++ T + HL + E+ ++ KAG
Sbjct: 91 GAD-VNAKDKDGYTPL-----HLAAREGHLEIVEVLLKAG 124
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 86 LNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFE 145
+N K+ +G T LH++ H++IV +++K D +NA++ T + HL +
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPL-----HLAAREGHL 81
Query: 146 ELKSMVRKAG 155
E+ ++ KAG
Sbjct: 82 EIVEVLLKAG 91
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 13/144 (9%)
Query: 13 VRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLET 72
V +G TPLH+ AE G+ +++ K L + + T LH AA+ EV++
Sbjct: 30 VNASDSDGRTPLHHAAENGHKEVV-KLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKL 88
Query: 73 MLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMD 132
++ VN K+ +G T LH + H ++V+L++ + D +N +S T +D
Sbjct: 89 LISKGADVNA------KDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNTSDSDGRTPLD 141
Query: 133 MVKFHLQTKPEFEELKSMVRKAGG 156
+ + H EE+ ++ K GG
Sbjct: 142 LAREHGN-----EEVVKLLEKQGG 160
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 61/114 (53%), Gaps = 8/114 (7%)
Query: 20 GVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRY 79
G+TPLH A G+++++ L + + + I T LH+AA LE++E +L
Sbjct: 47 GLTPLHLAATYGHLEIVEVLLKHGAD-VNAIDIXGSTPLHLAALIGHLEIVEVLLKHGAD 105
Query: 80 VNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDM 133
VN D W G+T LH++ H++IV +++K D +NA++ TA D+
Sbjct: 106 VNAVD--TW----GDTPLHLAAIMGHLEIVEVLLKHGAD-VNAQDKFGKTAFDI 152
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 61/114 (53%), Gaps = 8/114 (7%)
Query: 20 GVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRY 79
G+TPLH A G+++++ L + + + I T LH+AA LE++E +L
Sbjct: 47 GLTPLHLAATYGHLEIVEVLLKHGAD-VNAIDIMGSTPLHLAALIGHLEIVEVLLKHGAD 105
Query: 80 VNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDM 133
VN D W G+T LH++ H++IV +++K D +NA++ TA D+
Sbjct: 106 VNAVD--TW----GDTPLHLAAIMGHLEIVEVLLKHGAD-VNAQDKFGKTAFDI 152
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 8/121 (6%)
Query: 13 VRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLET 72
V + G TPLH A KG+++++ L + + +T LH+AA Y LE++E
Sbjct: 40 VNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGAD-VNAADKMGDTPLHLAALYGHLEIVEV 98
Query: 73 MLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMD 132
+L VN D + T LH++ H++IV +++K D +NA++ TA D
Sbjct: 99 LLKNGADVNATDTYGF------TPLHLAADAGHLEIVEVLLKYGAD-VNAQDKFGKTAFD 151
Query: 133 M 133
+
Sbjct: 152 I 152
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 86 LNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKF--HLQ 139
+N ++D G T LH++ + H++IV +++K D +NA + +T + + HL+
Sbjct: 40 VNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGAD-VNAADKMGDTPLHLAALYGHLE 94
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 8/121 (6%)
Query: 13 VRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLET 72
V +G TPLH A G+++++ L + + + T LH+AA LE++E
Sbjct: 40 VNATDNDGYTPLHLAASNGHLEIVEVLLKNGAD-VNASDLTGITPLHLAAATGHLEIVEV 98
Query: 73 MLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMD 132
+L VN + ND G+T LH++ H++IV +++K D +NA++ TA D
Sbjct: 99 LLKHGADVNA-----YDND-GHTPLHLAAKYGHLEIVEVLLKHGAD-VNAQDKFGKTAFD 151
Query: 133 M 133
+
Sbjct: 152 I 152
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Query: 20 GVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRY 79
G+TPLH A G+++++ L + + T LH+AAKY LE++E +L
Sbjct: 80 GITPLHLAAATGHLEIVEVLLKHGAD-VNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGAD 138
Query: 80 VNMDDILNWKNDEGNTLLHISISRSHIQIVRLI 112
VN D G T ISI + + ++
Sbjct: 139 VNAQDKF------GKTAFDISIDNGNEDLAEIL 165
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 58 LHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVR 117
+H AA+ L+ L+T+L + VN++D +EGN LH++ H+++V +VK
Sbjct: 74 IHDAARAGFLDTLQTLLEFQADVNIED------NEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Query: 118 DQINARNSKDNTAMDMVKFH 137
+ RN K +TA D+ + +
Sbjct: 128 SNVGHRNHKGDTACDLARLY 147
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 5 LIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKY 64
L++F + V ++ EG PLH A++G++ ++ + ++ + +TA +A Y
Sbjct: 89 LLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLY 147
Query: 65 DRLEVLETM 73
R EV+ M
Sbjct: 148 GRNEVVSLM 156
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 58 LHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVR 117
+H AA+ L+ L+T+L + VN++D +EGN LH++ H+++V +VK
Sbjct: 74 IHDAARAGFLDTLQTLLEFQADVNIED------NEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Query: 118 DQINARNSKDNTAMDMVKFH 137
+ RN K +TA D+ + +
Sbjct: 128 SNVGHRNHKGDTACDLARLY 147
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 5 LIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKY 64
L++F + V ++ EG PLH A++G++ ++ + ++ + +TA +A Y
Sbjct: 89 LLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLY 147
Query: 65 DRLEVLETM 73
R EV+ M
Sbjct: 148 GRNEVVSLM 156
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 61/114 (53%), Gaps = 8/114 (7%)
Query: 20 GVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRY 79
G+TPLH A G+++++ + L + + T LH+AA LE++E +L +
Sbjct: 47 GLTPLHLAAVSGHLEIV-EVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGAD 105
Query: 80 VNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDM 133
VN D+ G+T LH++ H++IV +++K D +NA++ TA D+
Sbjct: 106 VNAFDM------TGSTPLHLAADEGHLEIVEVLLKYGAD-VNAQDKFGKTAFDI 152
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 58 LHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVR 117
+H AA+ L+ L+T+L + VN++D +EGN LH++ H+++V +VK
Sbjct: 74 IHDAARAGFLDTLQTLLEFQADVNIED------NEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Query: 118 DQINARNSKDNTAMDMVKFH 137
+ RN K +TA D+ + +
Sbjct: 128 SNVGHRNHKGDTACDLARLY 147
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 5 LIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKY 64
L++F + V ++ EG PLH A++G++ ++ + ++ + +TA +A Y
Sbjct: 89 LLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLY 147
Query: 65 DRLEVLETM 73
R EV+ M
Sbjct: 148 GRNEVVSLM 156
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 14/117 (11%)
Query: 20 GVTPLHYVAEKGN---VDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGW 76
G+TPLH V G+ +++L K+ A S T LH+AA LE++E +L +
Sbjct: 47 GITPLHLVVNNGHLEIIEVLLKYAADVNAS----DKSGWTPLHLAAYRGHLEIVEVLLKY 102
Query: 77 LRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDM 133
VN D +G T LH++ H++IV +++K D +NA++ TA D+
Sbjct: 103 GADVNAMDY------QGYTPLHLAAEDGHLEIVEVLLKYGAD-VNAQDKFGKTAFDI 152
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 12/100 (12%)
Query: 56 TALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKR 115
T LH+ LE++E +L + VN D W T LH++ R H++IV +++K
Sbjct: 49 TPLHLVVNNGHLEIIEVLLKYAADVNASDKSGW------TPLHLAAYRGHLEIVEVLLKY 102
Query: 116 VRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAG 155
D +NA + + T + HL + E+ ++ K G
Sbjct: 103 GAD-VNAMDYQGYTPL-----HLAAEDGHLEIVEVLLKYG 136
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 13/105 (12%)
Query: 13 VRVQGREGVTPLHYVAEKGN---VDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEV 69
V + G TPLH A +G+ V++L K+ A + + + T LH+AA+ LE+
Sbjct: 73 VNASDKSGWTPLHLAAYRGHLEIVEVLLKYGA----DVNAMDYQGYTPLHLAAEDGHLEI 128
Query: 70 LETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVK 114
+E +L + VN D G T ISI + + ++ K
Sbjct: 129 VEVLLKYGADVNAQDKF------GKTAFDISIDNGNEDLAEILQK 167
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 58 LHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVR 117
+H AA+ L+ L+T+L VN++D +EGN LH++ H+++V +VK
Sbjct: 74 IHDAARAGFLDTLQTLLENQADVNIED------NEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Query: 118 DQINARNSKDNTAMDMVKFH 137
+ RN K +TA D+ + +
Sbjct: 128 SNVGHRNHKGDTACDLARLY 147
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 31/61 (50%)
Query: 13 VRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLET 72
V ++ EG PLH A++G++ ++ + ++ + +TA +A Y R EV+
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSL 155
Query: 73 M 73
M
Sbjct: 156 M 156
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 61/127 (48%), Gaps = 20/127 (15%)
Query: 13 VRVQGREGVTPLHYVAEKGN---VDLLCKFLAACPESILQVTIRKE---TALHVAAKYDR 66
V +G TPLH A G+ V++L K A V R T LH+AA
Sbjct: 40 VNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGA-------DVNARDTDGWTPLHLAADNGH 92
Query: 67 LEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSK 126
LE++E +L + VN D G T LH++ R H++IV +++K D +NA++
Sbjct: 93 LEIVEVLLKYGADVNAQDAY------GLTPLHLAADRGHLEIVEVLLKHGAD-VNAQDKF 145
Query: 127 DNTAMDM 133
TA D+
Sbjct: 146 GKTAFDI 152
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 63/121 (52%), Gaps = 8/121 (6%)
Query: 13 VRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLET 72
V + G TPLH A G+++++ L + + V T L +AA + LE++E
Sbjct: 40 VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD-VNAVDHAGMTPLRLAALFGHLEIVEV 98
Query: 73 MLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMD 132
+L VN +D+ EG+T LH++ H++IV +++K D +NA++ TA D
Sbjct: 99 LLKNGADVNANDM------EGHTPLHLAAMFGHLEIVEVLLKNGAD-VNAQDKFGKTAFD 151
Query: 133 M 133
+
Sbjct: 152 I 152
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 62/114 (54%), Gaps = 8/114 (7%)
Query: 20 GVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRY 79
G TPLH A G+++++ L + + ++ T LH+AA+ LE++E +L
Sbjct: 47 GWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSL-GVTPLHLAARRGHLEIVEVLL----- 100
Query: 80 VNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDM 133
N D+ N + G T LH++ R H++IV +++K D +NA++ TA D+
Sbjct: 101 KNGADV-NASDSHGFTPLHLAAKRGHLEIVEVLLKNGAD-VNAQDKFGKTAFDI 152
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 51/100 (51%), Gaps = 12/100 (12%)
Query: 56 TALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKR 115
T LH+AA + LE++E +L VN D L G T LH++ R H++IV +++K
Sbjct: 49 TPLHLAAHFGHLEIVEVLLKNGADVNAKDSL------GVTPLHLAARRGHLEIVEVLLKN 102
Query: 116 VRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAG 155
D +NA +S T + HL K E+ ++ K G
Sbjct: 103 GAD-VNASDSHGFTPL-----HLAAKRGHLEIVEVLLKNG 136
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 17/101 (16%)
Query: 20 GVTPLHYVAEKGNVDLLCKFLA-----ACPESILQVTIRKETALHVAAKYDRLEVLETML 74
G TPLH A +G+V+ + L AC +T + T LHVAAKY ++ V E +L
Sbjct: 113 GHTPLHIAAREGHVETVLALLEKEASQAC------MTKKGFTPLHVAAKYGKVRVAELLL 166
Query: 75 GWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKR 115
D N G T LH+++ +++ IV+L++ R
Sbjct: 167 ------ERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPR 201
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 11/101 (10%)
Query: 17 GREGVTPLHYVAEKGNVDLLCKFL--AACPESILQVTIRKETALHVAAKYDRLEVLETML 74
G+ G+TPLH N+D++ L P S T LH+AAK +++EV ++L
Sbjct: 176 GKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHS---PAWNGYTPLHIAAKQNQVEVARSLL 232
Query: 75 GWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKR 115
+ N + + +G T LH++ H ++V L++ +
Sbjct: 233 QYGGSANAESV------QGVTPLHLAAQEGHAEMVALLLSK 267
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 15/101 (14%)
Query: 18 REGVTPLHYVAEKGNV---DLLCKFLAACPESILQVTIRKE-TALHVAAKYDRLEVLETM 73
+ G+TPLH VA++G+V D+L K ++ T R T LHVA+ Y +++++ +
Sbjct: 276 KSGLTPLHLVAQEGHVPVADVLIKH-----GVMVDATTRMGYTPLHVASHYGNIKLVKFL 330
Query: 74 LGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVK 114
L + D+ N K G + LH + + H IV L++K
Sbjct: 331 L-----QHQADV-NAKTKLGYSPLHQAAQQGHTDIVTLLLK 365
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/171 (21%), Positives = 77/171 (45%), Gaps = 21/171 (12%)
Query: 6 IDFDRNLVRVQGR------EGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALH 59
++ R+L++ G +GVTPLH A++G+ +++ L+ L T LH
Sbjct: 225 VEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLG-NKSGLTPLH 283
Query: 60 VAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQ 119
+ A+ + V + ++ V+ + + T LH++ +I++V+ +++ D
Sbjct: 284 LVAQEGHVPVADVLIKHGVMVDATTRMGY------TPLHVASHYGNIKLVKFLLQHQAD- 336
Query: 120 INARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGG--RERSSLATMEIA 168
+NA+ T + H + ++ +++ K G E SS T +A
Sbjct: 337 VNAK-----TKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLA 382
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 52/128 (40%), Gaps = 32/128 (25%)
Query: 21 VTPLHYVAEKGNVDLLCKFL--AACPESILQVTIRKETALHVAAKYDRLEVLETML---- 74
+TPLH + G++ ++ L A P ++ ET LH+AA+ EV + +L
Sbjct: 15 LTPLHVASFMGHLPIVKNLLQRGASPNV---SNVKVETPLHMAARAGHTEVAKYLLQNKA 71
Query: 75 ----------------GWLRYVNMDDIL-------NWKNDEGNTLLHISISRSHIQIVRL 111
+ + NM +L N G+T LHI+ H++ V
Sbjct: 72 KVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLA 131
Query: 112 IVKRVRDQ 119
++++ Q
Sbjct: 132 LLEKEASQ 139
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 7/81 (8%)
Query: 53 RKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLI 112
+ T LH+AA YD LE++E +L VN D ++G+T LH++ H++IV ++
Sbjct: 46 KGNTPLHLAADYDHLEIVEVLLKHGADVNAHD------NDGSTPLHLAALFGHLEIVEVL 99
Query: 113 VKRVRDQINARNSKDNTAMDM 133
+K D +NA++ TA D+
Sbjct: 100 LKHGAD-VNAQDKFGKTAFDI 119
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 86 LNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKF--HLQ 139
+N + +GNT LH++ H++IV +++K D +NA ++ +T + + HL+
Sbjct: 40 VNANDRKGNTPLHLAADYDHLEIVEVLLKHGAD-VNAHDNDGSTPLHLAALFGHLE 94
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 68/136 (50%), Gaps = 13/136 (9%)
Query: 20 GVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRY 79
G TPLH A G+++++ K L + T LH+AA+ LEV++ +L
Sbjct: 2 GRTPLHLAARNGHLEVV-KLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL----E 56
Query: 80 VNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQ 139
D +N K+ G T LH++ H+++V+L+++ D +NA++ T + HL
Sbjct: 57 AGAD--VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPL-----HLA 108
Query: 140 TKPEFEELKSMVRKAG 155
+ E+ ++ +AG
Sbjct: 109 ARNGHLEVVKLLLEAG 124
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 56/106 (52%), Gaps = 8/106 (7%)
Query: 18 REGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWL 77
++G TPLH A+ G+ + + K L+ + + + T LH+AAK E+++ +L
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 78 RYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINAR 123
VN ++ +GNT H++ H +IV+L+ + D +NAR
Sbjct: 66 ADVNA------RSKDGNTPEHLAKKNGHHEIVKLLDAKGAD-VNAR 104
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 56 TALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKR 115
T LH AAK E ++ +L VN ++ +GNT LH++ H +IV+L++ +
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSKGADVNA------RSKDGNTPLHLAAKNGHAEIVKLLLAK 64
Query: 116 VRDQINARNSKDNTAMDMVK 135
D +NAR+ NT + K
Sbjct: 65 GAD-VNARSKDGNTPEHLAK 83
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 59/117 (50%), Gaps = 14/117 (11%)
Query: 20 GVTPLHYVAEKGN---VDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGW 76
G TPLH A+ G+ V++L K+ A + T LH+AA LE++E +L
Sbjct: 47 GHTPLHLAAKTGHLEIVEVLLKYGA----DVNAWDNYGATPLHLAADNGHLEIVEVLLKH 102
Query: 77 LRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDM 133
VN D EG T LH++ H++IV +++K D +NA++ TA D+
Sbjct: 103 GADVNAKDY------EGFTPLHLAAYDGHLEIVEVLLKYGAD-VNAQDKFGKTAFDI 152
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 57/110 (51%), Gaps = 7/110 (6%)
Query: 22 TPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVN 81
+PLH AE G+VD+ C L +I + + T L AA+ + LE ++ + +
Sbjct: 13 SPLHAAAEAGHVDI-CHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYL------IK 65
Query: 82 MDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAM 131
+++ K+ EG+T LH++ + H ++V+ ++ + +N ++ T M
Sbjct: 66 AGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPM 115
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 50/106 (47%), Gaps = 7/106 (6%)
Query: 13 VRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLET 72
+ ++ E LH+ A G VD+ + L A + V I ++ LH+AA+ +R + +
Sbjct: 137 INIRDNEENICLHWAAFSGCVDIA-EILLAAKCDLHAVNIHGDSPLHIAARENRYDCV-- 193
Query: 73 MLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRD 118
+ +++ D + KN EG T L + S + + K ++D
Sbjct: 194 ----VLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 62/124 (50%), Gaps = 14/124 (11%)
Query: 13 VRVQGREGVTPLHYVAEKGN---VDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEV 69
V G TPLH A G+ V++L K A S + T LH+AA + LE+
Sbjct: 40 VNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDAS----DVFGYTPLHLAAYWGHLEI 95
Query: 70 LETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNT 129
+E +L N D+ N + +G T LH++ +++IV +++K D +NA++ T
Sbjct: 96 VEVLL-----KNGADV-NAMDSDGMTPLHLAAKWGYLEIVEVLLKHGAD-VNAQDKFGKT 148
Query: 130 AMDM 133
A D+
Sbjct: 149 AFDI 152
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 12/100 (12%)
Query: 56 TALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKR 115
T LH+AA LE++E +L V+ D+ G T LH++ H++IV +++K
Sbjct: 49 TPLHLAAYSGHLEIVEVLLKHGADVDASDVF------GYTPLHLAAYWGHLEIVEVLLKN 102
Query: 116 VRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAG 155
D +NA +S M HL K + E+ ++ K G
Sbjct: 103 GAD-VNAMDSD-----GMTPLHLAAKWGYLEIVEVLLKHG 136
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
Query: 20 GVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRY 79
G TPLH A G+++++ L + + + T LH+AAK+ LE++E +L
Sbjct: 80 GYTPLHLAAYWGHLEIVEVLLKNGAD-VNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGAD 138
Query: 80 VNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVK 114
VN D G T ISI + + ++ K
Sbjct: 139 VNAQDKF------GKTAFDISIDNGNEDLAEILQK 167
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 7/78 (8%)
Query: 56 TALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKR 115
T LH+AA+ LE++E +L + VN +D N+ G T LH++ R H++IV +++K
Sbjct: 49 TPLHLAAQLGHLEIVEVLLKYGADVNAED--NF----GITPLHLAAIRGHLEIVEVLLKH 102
Query: 116 VRDQINARNSKDNTAMDM 133
D +NA++ TA D+
Sbjct: 103 GAD-VNAQDKFGKTAFDI 119
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 20 GVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRY 79
G TPLH A G+++++ L + ++ T LH+AA LEV+E +L
Sbjct: 47 GWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGV-TPLHLAADRGHLEVVEVLLKNGAD 105
Query: 80 VNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDM 133
VN +D G T LH++ + H++IV +++K D +NA++ TA D+
Sbjct: 106 VNAND------HNGFTPLHLAANIGHLEIVEVLLKHGAD-VNAQDKFGKTAFDI 152
Score = 35.0 bits (79), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
Query: 20 GVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRY 79
GVTPLH A++G+++++ L + + T LH+AA LE++E +L
Sbjct: 80 GVTPLHLAADRGHLEVVEVLLKNGAD-VNANDHNGFTPLHLAANIGHLEIVEVLLKHGAD 138
Query: 80 VNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVK 114
VN D G T ISI + + ++ K
Sbjct: 139 VNAQDKF------GKTAFDISIDNGNEDLAEILQK 167
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 7/78 (8%)
Query: 56 TALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKR 115
T LH+AAK LE++E +L VN DI W G T LH++ + H++IV ++++
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGADVNASDI--W----GRTPLHLAATVGHLEIVEVLLEY 102
Query: 116 VRDQINARNSKDNTAMDM 133
D +NA++ TA D+
Sbjct: 103 GAD-VNAQDKFGKTAFDI 119
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 46/98 (46%), Gaps = 13/98 (13%)
Query: 20 GVTPLHYVAEKGN---VDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGW 76
GVTPLH A++G+ V++L K A S I T LH+AA LE++E +L +
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNAS----DIWGRTPLHLAATVGHLEIVEVLLEY 102
Query: 77 LRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVK 114
VN D G T ISI + + ++ K
Sbjct: 103 GADVNAQDKF------GKTAFDISIDNGNEDLAEILQK 134
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 86 LNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARN 124
+N +D G T LH++ R H++IV +++K D +NA +
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD-VNASD 77
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 8/114 (7%)
Query: 20 GVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRY 79
G+TPLH A G ++++ L + + T LH+AA LE++E +L
Sbjct: 39 GLTPLHLAAANGQLEIVEVLLKNGAD-VNASDSAGITPLHLAAYDGHLEIVEVLLKHGAD 97
Query: 80 VNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDM 133
VN D W T LH++ ++IV +++K D +NA+++ TA D+
Sbjct: 98 VNAYDRAGW------TPLHLAALSGQLEIVEVLLKHGAD-VNAQDALGLTAFDI 144
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 9/101 (8%)
Query: 13 VRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKE-TALHVAAKYDRLEVLE 71
V G+TPLH A G+++++ L + + R T LH+AA +LE++E
Sbjct: 65 VNASDSAGITPLHLAAYDGHLEIVEVLLKHGAD--VNAYDRAGWTPLHLAALSGQLEIVE 122
Query: 72 TMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLI 112
+L VN D L G T ISI++ + ++
Sbjct: 123 VLLKHGADVNAQDAL------GLTAFDISINQGQEDLAEIL 157
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 86 LNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKF--HLQ 139
+N +D G T LH++ + ++IV +++K D +NA +S T + + + HL+
Sbjct: 32 VNATDDNGLTPLHLAAANGQLEIVEVLLKNGAD-VNASDSAGITPLHLAAYDGHLE 86
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 7/78 (8%)
Query: 56 TALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKR 115
T LH+AAK LE++E +L VN DI W G T LH++ + H++IV ++++
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGADVNARDI--W----GRTPLHLAATVGHLEIVEVLLEY 102
Query: 116 VRDQINARNSKDNTAMDM 133
D +NA++ TA D+
Sbjct: 103 GAD-VNAQDKFGKTAFDI 119
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 7/95 (7%)
Query: 20 GVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRY 79
GVTPLH A++G+++++ L + + I T LH+AA LE++E +L +
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGAD-VNARDIWGRTPLHLAATVGHLEIVEVLLEYGAD 105
Query: 80 VNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVK 114
VN D G T ISI + + ++ K
Sbjct: 106 VNAQDKF------GKTAFDISIDNGNEDLAEILQK 134
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 86 LNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARN 124
+N +D G T LH++ R H++IV +++K D +NAR+
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD-VNARD 77
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 12/128 (9%)
Query: 13 VRVQGREGVTPLHYVAEKGNVDLLCKFL--AACPESILQVTIRKETALHVAAKYDRLEVL 70
V + G TPLHY A K ++ L A P++ + TA+H AA L+++
Sbjct: 100 VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHY---EATAMHRAAAKGNLKMI 156
Query: 71 ETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTA 130
+L + N+ D EGNT LH++ ++ +L+V + I N ++ T
Sbjct: 157 HILLYYKASTNIQDT------EGNTPLHLACDEERVEEAKLLVSQ-GASIYIENKEEKTP 209
Query: 131 MDMVKFHL 138
+ + K L
Sbjct: 210 LQVAKGGL 217
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 61/151 (40%), Gaps = 27/151 (17%)
Query: 56 TALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKR 115
TALH A E++E +L + +N K+D G + LHI+ S +IV+ ++ +
Sbjct: 43 TALHWACSAGHTEIVEFLL------QLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGK 96
Query: 116 VRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERSSLATMEIADYLKRGL 175
Q+NA N T + H E+ M+ + G A + D+ +
Sbjct: 97 -GAQVNAVNQNGCTPL-----HYAASKNRHEIAVMLLEGG-------ANPDAKDHYEATA 143
Query: 176 TWRRKV--------LLFFYRSSLCITDENRN 198
R +L +Y++S I D N
Sbjct: 144 MHRAAAKGNLKMIHILLYYKASTNIQDTEGN 174
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 12/128 (9%)
Query: 13 VRVQGREGVTPLHYVAEKGNVDLLCKFL--AACPESILQVTIRKETALHVAAKYDRLEVL 70
V + G TPLHY A K ++ L A P++ + TA+H AA L+++
Sbjct: 99 VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHY---EATAMHRAAAKGNLKMI 155
Query: 71 ETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTA 130
+L + N+ D EGNT LH++ ++ +L+V + I N ++ T
Sbjct: 156 HILLYYKASTNIQDT------EGNTPLHLACDEERVEEAKLLVSQ-GASIYIENKEEKTP 208
Query: 131 MDMVKFHL 138
+ + K L
Sbjct: 209 LQVAKGGL 216
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 61/151 (40%), Gaps = 27/151 (17%)
Query: 56 TALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKR 115
TALH A E++E +L + +N K+D G + LHI+ S +IV+ ++ +
Sbjct: 42 TALHWACSAGHTEIVEFLL------QLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGK 95
Query: 116 VRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERSSLATMEIADYLKRGL 175
Q+NA N T + H E+ M+ + G A + D+ +
Sbjct: 96 -GAQVNAVNQNGCTPL-----HYAASKNRHEIAVMLLEGG-------ANPDAKDHYEATA 142
Query: 176 TWRRKV--------LLFFYRSSLCITDENRN 198
R +L +Y++S I D N
Sbjct: 143 MHRAAAKGNLKMIHILLYYKASTNIQDTEGN 173
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 7/78 (8%)
Query: 56 TALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKR 115
T LH+AAK LE++E +L VN D +W G T LH++ + H++IV ++++
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGADVNASD--SW----GRTPLHLAATVGHLEIVEVLLEY 102
Query: 116 VRDQINARNSKDNTAMDM 133
D +NA++ TA D+
Sbjct: 103 GAD-VNAQDKFGKTAFDI 119
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 7/95 (7%)
Query: 20 GVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRY 79
GVTPLH A++G+++++ L + + + T LH+AA LE++E +L +
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGR-TPLHLAATVGHLEIVEVLLEYGAD 105
Query: 80 VNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVK 114
VN D G T ISI + + ++ K
Sbjct: 106 VNAQDKF------GKTAFDISIDNGNEDLAEILQK 134
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 86 LNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNS 125
+N +D G T LH++ R H++IV +++K D +NA +S
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD-VNASDS 78
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 7/97 (7%)
Query: 22 TPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLE---VLETMLGWLR 78
+PL A++ +V L K L + Q ETALH+AA YD LE VL L
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64
Query: 79 YVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKR 115
+ M L EG T LHI++ ++ +VR ++ R
Sbjct: 65 FEPMTSELY----EGQTALHIAVINQNVNLVRALLAR 97
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 63/142 (44%), Gaps = 12/142 (8%)
Query: 4 RLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRK----ETALH 59
+L+ F+ V +G G T LH A N++ + A PE + + + +TALH
Sbjct: 21 KLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH 80
Query: 60 VAAKYDRLEVLETMLGWLRYVNM---DDILNWKNDE----GNTLLHISISRSHIQIVRLI 112
+A + ++ +L V+ + +++ G L + +IVRL+
Sbjct: 81 IAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLL 140
Query: 113 VKRVRDQINARNSKDNTAMDMV 134
++ D I A++S NT + ++
Sbjct: 141 IEHGAD-IRAQDSLGNTVLHIL 161
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 71/178 (39%), Gaps = 10/178 (5%)
Query: 2 VLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVA 61
V+R + D + Q TPLH ++ L A + L+ R T LH+A
Sbjct: 24 VIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELR-DFRGNTPLHLA 82
Query: 62 AKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQIN 121
+ L + + ++ IL N G+T LH++ ++ IV L+V D +N
Sbjct: 83 CEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD-VN 141
Query: 122 ARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERSSLATMEIADYLKRGLTWRR 179
A+ + HL + +L S++ K G + + + Y LTW R
Sbjct: 142 AQEPCNG----RTALHLAVDLQNPDLVSLLLKCG----ADVNRVTYQGYSPYQLTWGR 191
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 56 TALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKR 115
T LH+AA D LE++E +L VN D + G T LH+ H++IV +++K
Sbjct: 49 TPLHLAAMNDHLEIVEVLLKNGADVNAIDAI------GETPLHLVAMYGHLEIVEVLLKH 102
Query: 116 VRDQINARNSKDNTAMDM 133
D +NA++ TA D+
Sbjct: 103 GAD-VNAQDKFGKTAFDI 119
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 7/102 (6%)
Query: 13 VRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLET 72
V + + G+TPLH A +++++ L + + + ET LH+ A Y LE++E
Sbjct: 40 VNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGAD-VNAIDAIGETPLHLVAMYGHLEIVEV 98
Query: 73 MLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVK 114
+L VN D G T ISI + + ++ K
Sbjct: 99 LLKHGADVNAQDKF------GKTAFDISIDNGNEDLAEILQK 134
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 71/178 (39%), Gaps = 10/178 (5%)
Query: 2 VLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVA 61
V+R + D + Q TPLH ++ L A + L+ R T LH+A
Sbjct: 27 VIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELR-DFRGNTPLHLA 85
Query: 62 AKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQIN 121
+ L + + ++ IL N G+T LH++ ++ IV L+V D +N
Sbjct: 86 CEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD-VN 144
Query: 122 ARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERSSLATMEIADYLKRGLTWRR 179
A+ + HL + +L S++ K G + + + Y LTW R
Sbjct: 145 AQEPCNG----RTALHLAVDLQNPDLVSLLLKCG----ADVNRVTYQGYSPYQLTWGR 194
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 12/128 (9%)
Query: 13 VRVQGREGVTPLHYVAEKGNVDLLCKFL--AACPESILQVTIRKETALHVAAKYDRLEVL 70
V + G TPLHY A K ++ L A P++ TA+H AA L+++
Sbjct: 99 VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDA---TAMHRAAAKGNLKMV 155
Query: 71 ETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTA 130
+L + N+ D EGNT LH++ ++ + +V + I N ++ T
Sbjct: 156 HILLFYKASTNIQDT------EGNTPLHLACDEERVEEAKFLVTQ-GASIYIENKEEKTP 208
Query: 131 MDMVKFHL 138
+ + K L
Sbjct: 209 LQVAKGGL 216
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 60/152 (39%), Gaps = 29/152 (19%)
Query: 56 TALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVR-LIVK 114
TALH A E++E +L + +N K+D G + LHI+ S +IV+ L+VK
Sbjct: 42 TALHWACSAGHTEIVEFLL------QLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVK 95
Query: 115 RVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERSSLATMEIADYLKRG 174
+NA N T + H E+ M+ + G A + D+
Sbjct: 96 GA--HVNAVNQNGCTPL-----HYAASKNRHEIAVMLLEGG-------ANPDAKDHYDAT 141
Query: 175 LTWRRKV--------LLFFYRSSLCITDENRN 198
R +L FY++S I D N
Sbjct: 142 AMHRAAAKGNLKMVHILLFYKASTNIQDTEGN 173
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 12/128 (9%)
Query: 13 VRVQGREGVTPLHYVAEKGNVDLLCKFL--AACPESILQVTIRKETALHVAAKYDRLEVL 70
V + G TPLHY A K ++ L A P++ TA+H AA L+++
Sbjct: 99 VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDA---TAMHRAAAKGNLKMV 155
Query: 71 ETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTA 130
+L + N+ D EGNT LH++ ++ + +V + I N ++ T
Sbjct: 156 HILLFYKASTNIQDT------EGNTPLHLACDEERVEEAKFLVTQGA-SIYIENKEEKTP 208
Query: 131 MDMVKFHL 138
+ + K L
Sbjct: 209 LQVAKGGL 216
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 60/152 (39%), Gaps = 29/152 (19%)
Query: 56 TALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVR-LIVK 114
TALH A E++E +L + +N K+D G + LHI+ S +IV+ L+VK
Sbjct: 42 TALHWACSAGHTEIVEFLL------QLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVK 95
Query: 115 RVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERSSLATMEIADYLKRG 174
+NA N T + H E+ M+ + G A + D+
Sbjct: 96 GA--HVNAVNQNGCTPL-----HYAASKNRHEIAVMLLEGG-------ANPDAKDHYDAT 141
Query: 175 LTWRRKV--------LLFFYRSSLCITDENRN 198
R +L FY++S I D N
Sbjct: 142 AMHRAAAKGNLKMVHILLFYKASTNIQDTEGN 173
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 38.5 bits (88), Expect = 0.005, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 52/101 (51%), Gaps = 12/101 (11%)
Query: 56 TALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKR 115
T LH+AA+ LEV++ +L +N K+ G T LH++ H+++V+L+++
Sbjct: 4 TPLHLAARNGHLEVVKLLL------EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 57
Query: 116 VRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGG 156
D +NA++ T + HL + E+ ++ +AG
Sbjct: 58 GAD-VNAKDKNGRTPL-----HLAARNGHLEVVKLLLEAGA 92
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 9/96 (9%)
Query: 20 GVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRY 79
G + +Y NV L+C L A L+ + E LH AA + ++++ +L +
Sbjct: 31 GHSASYYAIADNNVRLVCTLLNAGA---LKNLLENEFPLHQAATLEDTKIVKILL----F 83
Query: 80 VNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKR 115
+DD + +D+GNT L+ ++ + Q V+L VK+
Sbjct: 84 SGLDD--SQFDDKGNTALYYAVDSGNXQTVKLFVKK 117
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 9/86 (10%)
Query: 56 TALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKR 115
T LH+AA LE++E +L N D+ N + G T LH++ S H++IV +++K
Sbjct: 37 TPLHMAAAVGHLEIVEVLL-----RNGADV-NAVDTNGTTPLHLAASLGHLEIVEVLLKY 90
Query: 116 VRDQINARNSKDNTAMDMVKF--HLQ 139
D +NA+++ T + + + HL+
Sbjct: 91 GAD-VNAKDATGITPLYLAAYWGHLE 115
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 19/88 (21%)
Query: 20 GVTPLHYVAEKGN---VDLLCKFLAACPESILQVTIRKETA---LHVAAKYDRLEVLETM 73
G TPLH A G+ V++L K+ A V + T L++AA + LE++E +
Sbjct: 68 GTTPLHLAASLGHLEIVEVLLKYGA-------DVNAKDATGITPLYLAAYWGHLEIVEVL 120
Query: 74 LGWLRYVNMDDILNWKNDEGNTLLHISI 101
L VN D G T ISI
Sbjct: 121 LKHGADVNAQDKF------GKTAFDISI 142
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 7/78 (8%)
Query: 56 TALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKR 115
T LH+AA LE++E +L N D+ N + G T LH++ H++IV +++K
Sbjct: 49 TPLHLAAMLGHLEIVEVLL-----KNGADV-NATGNTGRTPLHLAAWADHLEIVEVLLKH 102
Query: 116 VRDQINARNSKDNTAMDM 133
D +NA++ TA D+
Sbjct: 103 GAD-VNAQDKFGKTAFDI 119
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 7/95 (7%)
Query: 20 GVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRY 79
G TPLH A G+++++ L + + T LH+AA D LE++E +L
Sbjct: 47 GHTPLHLAAMLGHLEIVEVLLKNGAD-VNATGNTGRTPLHLAAWADHLEIVEVLLKHGAD 105
Query: 80 VNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVK 114
VN D G T ISI + + ++ K
Sbjct: 106 VNAQDKF------GKTAFDISIDNGNEDLAEILQK 134
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 19/124 (15%)
Query: 13 VRVQGREGVTPLHYVA------EKGNVD-------LLCKFLAACPESILQVTIRKETALH 59
V V+G +G TPL + E GN + ++ F+ Q ETALH
Sbjct: 4 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALH 63
Query: 60 VAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQ 119
+AA+Y R + + +L N+ D + G T LH ++S + +++++
Sbjct: 64 LAARYSRSDAAKRLLEASADANIQDNM------GRTPLHAAVSADAQGVFQILIRNRATD 117
Query: 120 INAR 123
++AR
Sbjct: 118 LDAR 121
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 19/124 (15%)
Query: 13 VRVQGREGVTPLHYVA------EKGNVD-------LLCKFLAACPESILQVTIRKETALH 59
V V+G +G TPL + E GN + ++ F+ Q ETALH
Sbjct: 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALH 62
Query: 60 VAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQ 119
+AA+Y R + + +L N+ D + G T LH ++S + +++++
Sbjct: 63 LAARYSRSDAAKRLLEASADANIQDNM------GRTPLHAAVSADAQGVFQILIRNRATD 116
Query: 120 INAR 123
++AR
Sbjct: 117 LDAR 120
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 23 PLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNM 82
PLH + + + L + P +LQ LH + + E+ +L + VN+
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 83 DDILNWKNDEGNTLLHISISRSHIQIVRLIVKR 115
DD + +D G T HI+ S ++++V+ + R
Sbjct: 65 DD---YPDDSGWTPFHIACSVGNLEVVKSLYDR 94
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 23 PLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNM 82
PLH + + + L + P +LQ LH + + E+ +L + VN+
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 83 DDILNWKNDEGNTLLHISISRSHIQIVRLIVKR 115
DD + +D G T HI+ S ++++V+ + R
Sbjct: 65 DD---YPDDSGWTPFHIACSVGNLEVVKSLYDR 94
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 27 VAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDIL 86
A+ G+V+ + K + + R+ T LH AA Y+R+ V+E +L V+
Sbjct: 17 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA---- 72
Query: 87 NWKNDEGNTLLHISISRSHIQIVRLIVKR 115
K+ G LH + S H ++ L+VK
Sbjct: 73 --KDKGGLVPLHNACSYGHYEVAELLVKH 99
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 27 VAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDIL 86
A+ G+V+ + K + + R+ T LH AA Y+R+ V+E +L V+
Sbjct: 15 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA---- 70
Query: 87 NWKNDEGNTLLHISISRSHIQIVRLIVKR 115
K+ G LH + S H ++ L+VK
Sbjct: 71 --KDKGGLVPLHNACSYGHYEVAELLVKH 97
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 23 PLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNM 82
PLH + + + L + P +LQ LH + + E+ +L + VN+
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 83 DDILNWKNDEGNTLLHISISRSHIQIVRLIVKR 115
DD + +D G T HI+ S ++++V+ + R
Sbjct: 65 DD---YPDDSGWTPFHIACSVGNLEVVKSLYDR 94
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 27 VAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDIL 86
A+ G+V+ + K + + R+ T LH AA Y+R+ V+E +L V+
Sbjct: 19 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA---- 74
Query: 87 NWKNDEGNTLLHISISRSHIQIVRLIVKR 115
K+ G LH + S H ++ L+VK
Sbjct: 75 --KDKGGLVPLHNACSYGHYEVAELLVKH 101
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 8/114 (7%)
Query: 20 GVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRY 79
G +PLH A+ G+ L A + + + T LH+AA ++E +L
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDR-TPLHMAASEGHANIVEVLLKHGAD 92
Query: 80 VNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDM 133
VN D+L T LH + +H ++V L++K D ++ ++ TA D+
Sbjct: 93 VNAKDMLKM------TALHWATEHNHQEVVELLIKYGAD-VHTQSKFCKTAFDI 139
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 34.7 bits (78), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 6/113 (5%)
Query: 19 EGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLR 78
EG TPL+ ++++ + + LQ +I L+ A+ R E+L ML +
Sbjct: 38 EGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQ-GRTEILAYML---K 93
Query: 79 YVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAM 131
+ D LN N G L + + HI V+L+++ R+ I+ +N TA+
Sbjct: 94 HATPD--LNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTAL 144
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/150 (21%), Positives = 59/150 (39%), Gaps = 29/150 (19%)
Query: 13 VRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLET 72
V V ++G +PLH A G DL+ L + + + LH+A + +V++
Sbjct: 79 VNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGAR-NADQAVPLHLACQQGHFQVVKC 137
Query: 73 MLGWLRYVNMDDI---------------------------LNWKNDEGNTLLHISISRSH 105
+L N D+ +N N++GNT LH ++ H
Sbjct: 138 LLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKH 197
Query: 106 IQIVRLIVKRVRDQINARNSKDNTAMDMVK 135
+ +V L++ + N + TA+D +
Sbjct: 198 VFVVELLLLH-GASVQVLNKRQRTAVDCAE 226
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 56 TALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKR 115
T L++A + LE++E +L VN D + + T LH++ H++I +++K
Sbjct: 49 TPLYLATAHGHLEIVEVLLKNGADVNAVDAIGF------TPLHLAAFIGHLEIAEVLLKH 102
Query: 116 VRDQINARNSKDNTAMDM 133
D +NA++ TA D+
Sbjct: 103 GAD-VNAQDKFGKTAFDI 119
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 7/102 (6%)
Query: 13 VRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLET 72
V + G+TPL+ G+++++ L + + V T LH+AA LE+ E
Sbjct: 40 VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD-VNAVDAIGFTPLHLAAFIGHLEIAEV 98
Query: 73 MLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVK 114
+L VN D G T ISI + + ++ K
Sbjct: 99 LLKHGADVNAQDKF------GKTAFDISIGNGNEDLAEILQK 134
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 19/124 (15%)
Query: 13 VRVQGREGVTPLHYVA------EKGNVD-------LLCKFLAACPESILQVTIRKETALH 59
V V+G +G TPL + E GN + ++ F+ Q TALH
Sbjct: 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGATALH 62
Query: 60 VAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQ 119
+AA Y R + + +L N+ D + G T LH ++S + +++++
Sbjct: 63 LAAAYSRSDAAKRLLEASADANIQDNM------GRTPLHAAVSADAQGVFQILIRNRATD 116
Query: 120 INAR 123
++AR
Sbjct: 117 LDAR 120
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 32.7 bits (73), Expect = 0.34, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 86 LNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDM 133
+N K+ +G T LH++ H++IV +++K D +NA++ TA D+
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAQDKFGKTAFDI 74
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 53 RKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLI 112
RK T LH+AA Y+R+ +++ +L V + K+ G LH + S H ++ L+
Sbjct: 57 RKSTPLHLAAGYNRVRIVQLLLQHGADV------HAKDKGGLVPLHNACSYGHYEVTELL 110
Query: 113 VKR 115
+K
Sbjct: 111 LKH 113
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 12/91 (13%)
Query: 55 ETALHVAAKY---DRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRL 111
ETALH A R +V E +L + N+ N KN + T LH++ R+H ++ +
Sbjct: 212 ETALHCAVASLHPKRKQVAELLL--RKGANV----NEKNKDFMTPLHVAAERAHNDVMEV 265
Query: 112 IVKRVRDQINARNSKDNTAMDMVKF--HLQT 140
+ K ++NA +S TA+ HLQT
Sbjct: 266 LHKH-GAKMNALDSLGQTALHRAALAGHLQT 295
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 12/108 (11%)
Query: 11 NLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTI---RKETALHVAAKYDRL 67
N V Q PLH A++GN+ +L C ++ + V TAL+ A
Sbjct: 64 NYVAEQAESIDNPLHEAAKRGNL----SWLRECLDNRVGVNGLDKAGSTALYWACHGGHK 119
Query: 68 EVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKR 115
+++E + + + LN +N G+T LH + + + IV+L++ +
Sbjct: 120 DIVEXL-----FTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAK 162
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 30/118 (25%)
Query: 16 QGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLG 75
+GR G+ P +YVAE+ ESI + LH AAK L
Sbjct: 55 KGRTGLIPSNYVAEQA-------------ESI-------DNPLHEAAKRGNLS------- 87
Query: 76 WLRYVNMDD--ILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAM 131
WLR +D+ +N + G+T L+ + H IV + + ++N +N +TA+
Sbjct: 88 WLREC-LDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTAL 144
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 31.2 bits (69), Expect = 0.83, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 89 KNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDM 133
K+ G+T LH++ H+++V+L+++ D +NA++ TA D+
Sbjct: 35 KDKNGSTPLHLAARNGHLEVVKLLLEAGAD-VNAQDKFGKTAFDI 78
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 55 ETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVK 114
ETALH+AA+Y R + + +L N+ D + G T LH ++S + +++++
Sbjct: 26 ETALHLAARYSRSDAAKRLLEASADANIQDNM------GRTPLHAAVSADAQGVFQILIR 79
Query: 115 RVRDQINAR 123
++AR
Sbjct: 80 NRATDLDAR 88
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 55 ETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVK 114
+TAL +A + R++V++ +L VN+ D D+G+T L + H +I L++
Sbjct: 184 QTALMLAVSHGRVDVVKALLACEADVNVQD------DDGSTALMCACEHGHKEIAGLLLA 237
Query: 115 RVRDQINARNSKDNTAM 131
I+ + +TA+
Sbjct: 238 VPSCDISLTDRDGSTAL 254
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 17/83 (20%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 82 MDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFH-LQT 140
+D ++N + GNT LH S+S ++ +V+ ++ +++ +N + + + L+T
Sbjct: 100 LDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKT 159
Query: 141 KPEFEELKSMVRKAGGRERSSLA 163
+ + E + + R ++S A
Sbjct: 160 QDDIETVLQLFRLGNINAKASQA 182
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 58/125 (46%), Gaps = 8/125 (6%)
Query: 10 RNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEV 69
N++ EG TPL + A G + ++ +FL + +E+AL +A ++
Sbjct: 42 ENVINHTDEEGFTPLMWAAAHGQIAVV-EFLLQNGADPQLLGKGRESALSLACSKGYTDI 100
Query: 70 LETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNT 129
++ +L VN D W G T L ++ +H++ V+++++ D +S N+
Sbjct: 101 VKMLLDCGVDVNEYD---WN---GGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNS 154
Query: 130 AMDMV 134
MD+
Sbjct: 155 -MDLA 158
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 62/127 (48%), Gaps = 14/127 (11%)
Query: 10 RNLVRVQGREGVTPLHYVAEKGNVDLLCKFL---AACPESILQVTIRKETALHVAAKYDR 66
N++ EG TPL + A G + ++ +FL A P+ + + +E+AL +A
Sbjct: 24 ENVINHTDEEGFTPLMWAAAHGQIAVV-EFLLQNGADPQLLGK---GRESALSLACSKGY 79
Query: 67 LEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSK 126
++++ +L VN D W G T L ++ +H++ V+++++ D +S
Sbjct: 80 TDIVKMLLDCGVDVNEYD---WN---GGTPLLYAVHGNHVKCVKMLLESGADPTIETDSG 133
Query: 127 DNTAMDM 133
N+ MD+
Sbjct: 134 YNS-MDL 139
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 56 TALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKR 115
TALHVAA EVL+ ++ VN+ D W T LH + + R++V+
Sbjct: 201 TALHVAAAKGYTEVLKLLIQARYDVNIKDYDGW------TPLHAAAHWGKEEACRILVEN 254
Query: 116 VRDQINARNSKDNTAMDMV 134
+ D + A N TA D+
Sbjct: 255 LCD-MEAVNKVGQTAFDVA 272
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 24/119 (20%), Positives = 52/119 (43%), Gaps = 26/119 (21%)
Query: 19 EGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHV------------------ 60
EG PLH A G +D+ ++L + + V +T L +
Sbjct: 105 EGWIPLHAAASCGYLDI-AEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQG 163
Query: 61 -----AAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVK 114
A K + +L WL +++D+ + K+ G T LH++ ++ + ++++L+++
Sbjct: 164 VDIEAARKEEERIMLRDARQWLNSGHINDVRHAKS--GGTALHVAAAKGYTEVLKLLIQ 220
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 62/127 (48%), Gaps = 14/127 (11%)
Query: 10 RNLVRVQGREGVTPLHYVAEKGNVDLLCKFL---AACPESILQVTIRKETALHVAAKYDR 66
N++ EG TPL + A G + ++ +FL A P+ + + +E+AL +A
Sbjct: 26 ENVINHTDEEGFTPLMWAAAHGQIAVV-EFLLQNGADPQLLGK---GRESALSLACSKGY 81
Query: 67 LEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSK 126
++++ +L VN D W G T L ++ +H++ V+++++ D +S
Sbjct: 82 TDIVKMLLDCGVDVNEYD---WN---GGTPLLYAVHGNHVKCVKMLLESGADPTIETDSG 135
Query: 127 DNTAMDM 133
N+ MD+
Sbjct: 136 YNS-MDL 141
>pdb|1R2H|A Chain A, Human Bcl-Xl Containing An Ala To Leu Mutation At Position
142
Length = 218
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 135 KFHLQTKPEFEELKSMVRKAGGRERSSLATMEIADYLKRGLTWRRKVLLFFYRSSLCI 192
+F L+ + F +L S + G S + + + + G+ W R VL F + +LC+
Sbjct: 96 EFELRYRRAFSDLTSQLHITPGTAYQSFEQV-VNELFRDGVNWGRIVLFFSFGGALCV 152
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 90 NDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAM 131
NDEG T LH ++ H +IV+ +V+ +NA +S T +
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQ-FGVNVNAADSDGWTPL 107
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 90 NDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAM 131
NDEG T LH ++ H +IV+ +V+ +NA +S T +
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQ-FGVNVNAADSDGWTPL 107
>pdb|3IHD|A Chain A, Crystal Structure Of Mouse Bcl-Xl Mutant (Y101a) At Ph 5.0
pdb|3ILC|A Chain A, Crystal Structure Of Mouse Bcl-Xl Mutant (Y101a) At Ph 6.0
Length = 197
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 135 KFHLQTKPEFEELKSMVRKAGGRERSSLATMEIADYLKRGLTWRRKVLLFFYRSSLCI 192
+F L+ + F +L S + G S + + + + G+ W R V F + +LC+
Sbjct: 97 EFELRARRAFSDLTSQLHITPGTAYQSFEQV-VNELFRDGVNWGRIVAFFSFGGALCV 153
>pdb|1S94|A Chain A, Crystal Structure Of The Habc Domain Of Neuronal Syntaxin
From The Squid Loligo Pealei
pdb|1S94|B Chain B, Crystal Structure Of The Habc Domain Of Neuronal Syntaxin
From The Squid Loligo Pealei
Length = 180
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/63 (22%), Positives = 33/63 (52%)
Query: 105 HIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERSSLAT 164
++ +R ++ ++ D ++A K + + + Q K E EEL + +++ + R L T
Sbjct: 44 QVEEIRAMIDKISDNVDAVKKKHSDILSAPQTDDQMKEELEELMTDIKRTANKVRGKLKT 103
Query: 165 MEI 167
+E+
Sbjct: 104 IEL 106
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 4/115 (3%)
Query: 18 REGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETAL-HVAAKYDRLEVLETMLGW 76
+ G T L AEKG+V++L L + AL H D +V E +
Sbjct: 166 KGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDV-EAITHL 224
Query: 77 LRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAM 131
L D +N + + G T L +++ + H+ +V+ ++++ +IN +S TA+
Sbjct: 225 LLDHGAD--VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTAL 277
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 28.9 bits (63), Expect = 4.7, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 89 KNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDM 133
K+ G+T LH++ H+++V+L+++ D + A++ TA D+
Sbjct: 53 KDKNGSTPLHLAARNGHLEVVKLLLEAGAD-VXAQDKFGKTAFDI 96
>pdb|2ZC0|A Chain A, Crystal Structure Of An Archaeal Alanine:glyoxylate
Aminotransferase
pdb|2ZC0|B Chain B, Crystal Structure Of An Archaeal Alanine:glyoxylate
Aminotransferase
pdb|2ZC0|C Chain C, Crystal Structure Of An Archaeal Alanine:glyoxylate
Aminotransferase
pdb|2ZC0|D Chain D, Crystal Structure Of An Archaeal Alanine:glyoxylate
Aminotransferase
Length = 407
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 44 PESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDI-LNWKNDEGNTLLHISIS 102
P + R++ L +A+KYD L + +T ++RY D + L ++EG ++ ++S
Sbjct: 187 PMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLS 246
Query: 103 R 103
+
Sbjct: 247 K 247
>pdb|1G5M|A Chain A, Human Bcl-2, Isoform 1
Length = 166
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 136 FHLQTKPEFEELKSMVRKAGGRERSSLATMEIADYLKRGLTWRRKVLLFFYRSSLCITDE 195
F + + +F E+ S + R AT+ + + + G+ W R V F + +C+
Sbjct: 63 FSRRYRGDFAEMSSQLHLTPFTARGRFATV-VEELFRDGVNWGRIVAFFEFGGVMCVESV 121
Query: 196 NR 197
NR
Sbjct: 122 NR 123
>pdb|2XA0|A Chain A, Crystal Structure Of Bcl-2 In Complex With A Bax Bh3
Peptide
pdb|2XA0|B Chain B, Crystal Structure Of Bcl-2 In Complex With A Bax Bh3
Peptide
Length = 207
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 143 EFEELKSMVRKAGGRERSSLATMEIADYLKRGLTWRRKVLLFFYRSSLCITDENR 197
+F E+ S + R AT+ + + + G+ W R V F + +C+ NR
Sbjct: 111 DFAEMSSQLHLTPFTARGRFATV-VEELFRDGVNWGRIVAFFEFGGVMCVESVNR 164
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 50 VTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHIS 100
VT +TALH+A + L+ +LG + + L+ +ND G T LH++
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLLG---FSAGHEYLDLQNDLGQTALHLA 52
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 50 VTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHIS 100
VT +TALH+A + L+ +LG + + L+ +ND G T LH++
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLLG---FSAGHEYLDLQNDLGQTALHLA 52
>pdb|4AQ3|A Chain A, Human Bcl-2 With Phenylacylsulfonamide Inhibitor
pdb|4AQ3|B Chain B, Human Bcl-2 With Phenylacylsulfonamide Inhibitor
pdb|4AQ3|C Chain C, Human Bcl-2 With Phenylacylsulfonamide Inhibitor
pdb|4AQ3|D Chain D, Human Bcl-2 With Phenylacylsulfonamide Inhibitor
pdb|4AQ3|E Chain E, Human Bcl-2 With Phenylacylsulfonamide Inhibitor
pdb|4AQ3|F Chain F, Human Bcl-2 With Phenylacylsulfonamide Inhibitor
Length = 169
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 136 FHLQTKPEFEELKSMVRKAGGRERSSLATMEIADYLKRGLTWRRKVLLFFYRSSLCITDE 195
F + + +F E+ S + R AT+ + + + G+ W R V F + +C+
Sbjct: 66 FSRRYRGDFAEMSSQLHLTPFTARGRFATV-VEELFRDGVNWGRIVAFFEFGGVMCVESV 124
Query: 196 NR 197
NR
Sbjct: 125 NR 126
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 4/115 (3%)
Query: 18 REGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETAL-HVAAKYDRLEVLETMLGW 76
+ G T L AEKG+V++L L + AL H D +V E +
Sbjct: 146 KGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDV-EAITHL 204
Query: 77 LRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAM 131
L D +N + + G T L +++ + H+ +V+ ++++ +IN +S TA+
Sbjct: 205 LLDHGAD--VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTAL 257
>pdb|2O2F|A Chain A, Solution Structure Of The Anti-Apoptotic Protein Bcl-2 In
Complex With An Acyl-Sulfonamide-Based Ligand
Length = 138
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 136 FHLQTKPEFEELKSMVRKAGGRERSSLATMEIADYLKRGLTWRRKVLLFFYRSSLCITDE 195
F + + +F E+ S + R AT+ + + + G+ W R V F + +C+
Sbjct: 38 FSRRYRRDFAEMSSQLHLTPFTARGRFATV-VEELFRDGVNWGRIVAFFEFGGVMCVESV 96
Query: 196 NR 197
NR
Sbjct: 97 NR 98
>pdb|1GJH|A Chain A, Human Bcl-2, Isoform 2
Length = 166
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 136 FHLQTKPEFEELKSMVRKAGGRERSSLATMEIADYLKRGLTWRRKVLLFFYRSSLCITDE 195
F + + +F E+ S + R AT+ + + + G+ W R V F + +C+
Sbjct: 63 FSRRYRRDFAEMSSQLHLTPFTARGRFATV-VEELFRDGVNWGRIVAFFEFGGVMCVESV 121
Query: 196 NR 197
NR
Sbjct: 122 NR 123
>pdb|1YSW|A Chain A, Solution Structure Of The Anti-Apoptotic Protein Bcl-2
Complexed With An Acyl-Sulfonamide-Based Ligand
pdb|2O22|A Chain A, Solution Structure Of The Anti-Apoptotic Protein Bcl-2 In
Complex With An Acyl-Sulfonamide-Based Ligand
pdb|2O21|A Chain A, Solution Structure Of The Anti-apoptotic Protein Bcl-2 In
Complex With An Acyl-sulfonamide-based Ligand
Length = 164
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 136 FHLQTKPEFEELKSMVRKAGGRERSSLATMEIADYLKRGLTWRRKVLLFFYRSSLCITDE 195
F + + +F E+ S + R AT+ + + + G+ W R V F + +C+
Sbjct: 61 FSRRYRRDFAEMSSQLHLTPFTARGRFATV-VEELFRDGVNWGRIVAFFEFGGVMCVESV 119
Query: 196 NR 197
NR
Sbjct: 120 NR 121
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 46/106 (43%), Gaps = 6/106 (5%)
Query: 13 VRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLET 72
VR +E VT LH+ A +DL+ +++ T LH A + L ++
Sbjct: 35 VRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQ 94
Query: 73 MLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRD 118
++ + ++ D EG + +H++ H IV ++ + +D
Sbjct: 95 LMKYGADPSLID------GEGCSCIHLAAQFGHTSIVAYLIAKGQD 134
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,697,227
Number of Sequences: 62578
Number of extensions: 299252
Number of successful extensions: 919
Number of sequences better than 100.0: 96
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 623
Number of HSP's gapped (non-prelim): 194
length of query: 344
length of database: 14,973,337
effective HSP length: 100
effective length of query: 244
effective length of database: 8,715,537
effective search space: 2126591028
effective search space used: 2126591028
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)