BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043153
         (89 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom
           Resolution
 pdb|2B6P|A Chain A, X-Ray Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) In
           An Open Pore State
 pdb|2C32|A Chain A, Co-Axial Association Of Recombinant Eye Lens Aquaporin-0
           Observed In Loosely Packed 3d-Crystals
          Length = 263

 Score = 28.5 bits (62), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 48  IAVAIGVSV-LGAAWGIYITGSSLIGAAIKAPRITSKNLIRY 88
           +A+A+G S+ LG  +G+Y TG+ +  A   AP I ++N   +
Sbjct: 160 VALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFTNH 201


>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
           (Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore
           State
          Length = 263

 Score = 28.5 bits (62), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 48  IAVAIGVSV-LGAAWGIYITGSSLIGAAIKAPRITSKNLIRY 88
           +A+A+G S+ LG  +G+Y TG+ +  A   AP I ++N   +
Sbjct: 160 VALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFTNH 201


>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A
           Closed Water Pore
          Length = 235

 Score = 28.1 bits (61), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 48  IAVAIGVSV-LGAAWGIYITGSSLIGAAIKAPRITSKNLIRY 88
           +A+A+G S+ LG  +G+Y TG+ +  A   AP I ++N   +
Sbjct: 156 VALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFTNH 197


>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
           (Aqp Mip) In E. Coli Polar Lipids
          Length = 220

 Score = 28.1 bits (61), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 48  IAVAIGVSV-LGAAWGIYITGSSLIGAAIKAPRITSKNLIRY 88
           +A+A+G S+ LG  +G+Y TG+ +  A   AP I ++N   +
Sbjct: 154 VALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFTNH 195


>pdb|3FEW|X Chain X, Structure And Function Of Colicin S4, A Colicin With A
           Duplicated Receptor Binding Domain
          Length = 505

 Score = 25.8 bits (55), Expect = 7.1,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)

Query: 27  ESSSWSRALVKISPYTFSAIGIAVAIGV--SVLGA 59
           E+ +W   ++++  +  S I  AVA+GV  + LGA
Sbjct: 421 ETGNWGPLMLEVESWVLSGIASAVALGVFSATLGA 455


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.132    0.373 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,923,646
Number of Sequences: 62578
Number of extensions: 55962
Number of successful extensions: 168
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 168
Number of HSP's gapped (non-prelim): 7
length of query: 89
length of database: 14,973,337
effective HSP length: 56
effective length of query: 33
effective length of database: 11,468,969
effective search space: 378475977
effective search space used: 378475977
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)