BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043153
(89 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P23968|VATO_YEAST V-type proton ATPase subunit c'' OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=VMA16 PE=1 SV=1
Length = 213
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 51/61 (83%)
Query: 26 GESSSWSRALVKISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNL 85
G ++ + L++ SPY ++ +GIA+ +G+SV+GAAWGI+ITGSS+IGA ++APRIT+KNL
Sbjct: 42 GSDINFGKFLLRTSPYMWANLGIALCVGLSVVGAAWGIFITGSSMIGAGVRAPRITTKNL 101
Query: 86 I 86
I
Sbjct: 102 I 102
>sp|O14046|VATO_SCHPO Probable V-type proton ATPase 20 kDa proteolipid subunit
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=vma16 PE=3 SV=1
Length = 199
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 44/61 (72%)
Query: 26 GESSSWSRALVKISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNL 85
GES + L+ SPYT+ +GIA + ++GAAWGI+I G+S++G A+KAPRI +KNL
Sbjct: 28 GESFDFGSFLLDTSPYTWGLLGIASCVAFGIIGAAWGIFICGTSILGGAVKAPRIKTKNL 87
Query: 86 I 86
I
Sbjct: 88 I 88
>sp|Q91V37|VATO_MOUSE V-type proton ATPase 21 kDa proteolipid subunit OS=Mus musculus
GN=Atp6v0b PE=1 SV=1
Length = 205
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 43/52 (82%)
Query: 35 LVKISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLI 86
L + SP+ +S +GI +AI +SV+GAAWGIYITGSS+IG +KAPRI +KNL+
Sbjct: 41 LTETSPFMWSNLGIGLAISLSVVGAAWGIYITGSSIIGGGVKAPRIKTKNLV 92
>sp|Q99437|VATO_HUMAN V-type proton ATPase 21 kDa proteolipid subunit OS=Homo sapiens
GN=ATP6V0B PE=2 SV=1
Length = 205
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 43/52 (82%)
Query: 35 LVKISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLI 86
L + SP+ +S +GI +AI +SV+GAAWGIYITGSS+IG +KAPRI +KNL+
Sbjct: 41 LTETSPFMWSNLGIGLAISLSVVGAAWGIYITGSSIIGGGVKAPRIKTKNLV 92
>sp|Q2TA24|VATO_BOVIN V-type proton ATPase 21 kDa proteolipid subunit OS=Bos taurus
GN=ATP6V0B PE=2 SV=1
Length = 205
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 43/52 (82%)
Query: 35 LVKISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLI 86
L + SP+ +S +GI +AI +SV+GAAWGIYITGSS+IG +KAPRI +KNL+
Sbjct: 41 LTETSPFMWSNLGIGLAISLSVVGAAWGIYITGSSIIGGGVKAPRIKTKNLV 92
>sp|P46567|SRG13_CAEEL Serpentine receptor class gamma-13 OS=Caenorhabditis elegans
GN=srg-13 PE=3 SV=1
Length = 336
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 8 NPKKKKKKLKKMSGSVMLGESSSWSRALVKISP 40
NPK +K LK+M SV +G S+S S V+I P
Sbjct: 300 NPKLRKMLLKRMQSSVTVGRSTSNSTIPVRIIP 332
>sp|Q5QZI1|ATPL_IDILO ATP synthase subunit c OS=Idiomarina loihiensis (strain ATCC
BAA-735 / DSM 15497 / L2-TR) GN=atpE PE=3 SV=1
Length = 85
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 43 FSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLIRYF 89
F+AI +++ IG++ LG A G I G + AA + P + + ++ F
Sbjct: 7 FTAIAVSIMIGLAALGTALGFGILGGKFLEAAARQPELAPQLQVKMF 53
>sp|Q1R031|PYRH_CHRSD Uridylate kinase OS=Chromohalobacter salexigens (strain DSM 3043
/ ATCC BAA-138 / NCIMB 13768) GN=pyrH PE=3 SV=1
Length = 253
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 41/89 (46%), Gaps = 20/89 (22%)
Query: 6 EKNPKKKKKK-LKKMSGSVMLGESSSWSRALVKISPYTFS----AIGIAVAIGVSVLGAA 60
E+N K K K+ L K+SG ++GE I P IG V IGV V
Sbjct: 13 ERNEKSKYKRILLKLSGEALIGEHE------FGIDPKVLDRMALEIGQLVGIGVQV---- 62
Query: 61 WGIYITGSSLI-GAAIKA---PRITSKNL 85
GI I G +L GAA+ A R+T ++
Sbjct: 63 -GIVIGGGNLFRGAALHAAGMERVTGDHM 90
>sp|A1RQB5|ATPL_SHESW ATP synthase subunit c OS=Shewanella sp. (strain W3-18-1) GN=atpE
PE=3 SV=1
Length = 84
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 42 TFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLIRYF 89
+F+AI +A+ IG++ LG A G I G + A+ + P + I+ F
Sbjct: 6 SFTAIAVAIMIGLAALGTAIGFAILGGKFLEASARQPELAPALQIKMF 53
>sp|A4YCI3|ATPL_SHEPC ATP synthase subunit c OS=Shewanella putrefaciens (strain CN-32 /
ATCC BAA-453) GN=atpE PE=3 SV=1
Length = 84
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 42 TFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLIRYF 89
+F+AI +A+ IG++ LG A G I G + A+ + P + I+ F
Sbjct: 6 SFTAIAVAIMIGLAALGTAIGFAILGGKFLEASARQPELAPALQIKMF 53
>sp|Q89B44|ATPL_BUCBP ATP synthase subunit c OS=Buchnera aphidicola subsp. Baizongia
pistaciae (strain Bp) GN=atpE PE=3 SV=1
Length = 79
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 46 IGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLIRYF 89
I +AV IG++ +GAA GI I GS + + P +TS ++F
Sbjct: 11 IAVAVMIGLAAIGAAVGIGILGSKFLEGVARQPDLTSLLRTQFF 54
>sp|A1U3Q2|PYRH_MARAV Uridylate kinase OS=Marinobacter aquaeolei (strain ATCC 700491 /
DSM 11845 / VT8) GN=pyrH PE=3 SV=1
Length = 242
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 19/87 (21%)
Query: 7 KNPKKKKKKLKKMSGSVMLGESSSWSRALVKISPYTFS----AIGIAVAIGVSVLGAAWG 62
KN + K+ L K+SG ++GE I P IG + IGV V G
Sbjct: 6 KNQPRYKRVLLKLSGEALMGEHD------FGIDPKVLDRMALEIGALIGIGVQV-----G 54
Query: 63 IYITGSSLI-GAAIKA---PRITSKNL 85
+ I G +L GAA+ A R+T ++
Sbjct: 55 LVIGGGNLFRGAALNAAGLDRVTGDHM 81
>sp|Q6CXJ8|TVP38_KLULA Golgi apparatus membrane protein TVP38 OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=TVP38 PE=3 SV=1
Length = 305
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 8/58 (13%)
Query: 1 SELITEKNPKKKKKKLKKMSGSVMLGESSSWSRALVKISPYTFSAIGIAVA--IGVSV 56
+E + NPK L+ +S SV+ G S W AL+++ P+ +S I A+A G+S+
Sbjct: 175 AERLIRMNPK-----LEAVS-SVLQGNDSYWMIALIRLCPFPYSFINGAIAGIYGISI 226
>sp|A0QW23|DCUP_MYCS2 Uroporphyrinogen decarboxylase OS=Mycobacterium smegmatis (strain
ATCC 700084 / mc(2)155) GN=hemE PE=1 SV=1
Length = 353
Score = 29.6 bits (65), Expect = 6.1, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 4 ITEKNPKKKKKKLKKMSGSVMLGESSSWSRALVKISPYTFSAIGIAVAIGVSVL 57
+ E P + ++ K M MLGESS+W + ++ T + + V GV L
Sbjct: 155 LVEGGPSRHHERTKAM----MLGESSTWHALMTALTDLTIAFLQAQVDAGVDAL 204
>sp|A4W5F6|LEXA_ENT38 LexA repressor OS=Enterobacter sp. (strain 638) GN=lexA PE=3 SV=1
Length = 202
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 14 KKLKKMSGSV-MLGESSSWSRALVKISPYTFSAIGIAVAI 52
K+LKK +V +L E+S +S +V + TFS G+AV +
Sbjct: 156 KRLKKQGNTVQLLPENSEFSPIVVDLREQTFSIEGLAVGV 195
>sp|Q9PJI3|DLDH_CHLMU Dihydrolipoyl dehydrogenase OS=Chlamydia muridarum (strain MoPn /
Nigg) GN=lpdA PE=3 SV=1
Length = 465
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 22 SVMLGESSSWSRAL-VKISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRI 80
SV L +S+ + + VK++ + F AIG AVA+G S AA + T ++GA + P
Sbjct: 353 SVGLSPTSAQQQGIPVKVTKFPFRAIGKAVAMGESDGFAAIISHETSQQILGAYVIGPHA 412
Query: 81 TS 82
+S
Sbjct: 413 SS 414
>sp|Q87A77|PYRD_XYLFT Dihydroorotate dehydrogenase (quinone) OS=Xylella fastidiosa
(strain Temecula1 / ATCC 700964) GN=pyrD PE=3 SV=1
Length = 351
Score = 29.3 bits (64), Expect = 8.4, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 11/72 (15%)
Query: 19 MSGSVMLGESSSWSRALVKISPYTFSAIGIA-----------VAIGVSVLGAAWGIYITG 67
+SG+ +LG+S+ R L P T IG+ +A G S++ G+ G
Sbjct: 266 LSGAPLLGQSTLVLRRLRTHLPETIDLIGVGGICCGADAGAKMAAGASLVQCYTGLIFKG 325
Query: 68 SSLIGAAIKAPR 79
L+G ++A R
Sbjct: 326 PQLVGECVEAIR 337
>sp|B0U5I1|PYRD_XYLFM Dihydroorotate dehydrogenase (quinone) OS=Xylella fastidiosa
(strain M12) GN=pyrD PE=3 SV=1
Length = 351
Score = 29.3 bits (64), Expect = 8.4, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 11/72 (15%)
Query: 19 MSGSVMLGESSSWSRALVKISPYTFSAIGIA-----------VAIGVSVLGAAWGIYITG 67
+SG+ +LG+S+ R L P T IG+ +A G S++ G+ G
Sbjct: 266 LSGAPLLGQSTLVLRRLRTHLPETIDLIGVGGICCGADAGAKMAAGASLVQCYTGLIFKG 325
Query: 68 SSLIGAAIKAPR 79
L+G ++A R
Sbjct: 326 PQLVGECVEAIR 337
>sp|B2I9T5|PYRD_XYLF2 Dihydroorotate dehydrogenase (quinone) OS=Xylella fastidiosa
(strain M23) GN=pyrD PE=3 SV=1
Length = 351
Score = 29.3 bits (64), Expect = 8.4, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 11/72 (15%)
Query: 19 MSGSVMLGESSSWSRALVKISPYTFSAIGIA-----------VAIGVSVLGAAWGIYITG 67
+SG+ +LG+S+ R L P T IG+ +A G S++ G+ G
Sbjct: 266 LSGAPLLGQSTLVLRRLRTHLPETIDLIGVGGICCGADAGAKMAAGASLVQCYTGLIFKG 325
Query: 68 SSLIGAAIKAPR 79
L+G ++A R
Sbjct: 326 PQLVGECVEAIR 337
>sp|Q6CUV2|ATG26_KLULA Sterol 3-beta-glucosyltransferase OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=ATG26 PE=3 SV=1
Length = 1209
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 9 PKKKKKKLKKMSGSVMLGESSSWSR 33
P+K KKKLK M+GS+ LG S +++
Sbjct: 466 PRKVKKKLKSMAGSLKLGSPSKFTK 490
>sp|Q6RZ07|MIP_CAVPO Lens fiber major intrinsic protein OS=Cavia porcellus GN=MIP PE=1
SV=1
Length = 263
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 48 IAVAIGVSV-LGAAWGIYITGSSLIGAAIKAPRITSKNLIRY 88
+A+A+G S+ LG +G+Y TG+ + A AP I ++N +
Sbjct: 160 VALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFTNH 201
>sp|Q06019|MIP_RANPI Lens fiber major intrinsic protein OS=Rana pipiens PE=1 SV=1
Length = 263
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 48 IAVAIGVSV-LGAAWGIYITGSSLIGAAIKAPRITSKNLIRY 88
+++AIG S+ LG +G+Y TG+S+ A AP + ++N +
Sbjct: 160 VSLAIGFSLTLGHLFGLYYTGASMNPARSFAPAVLTRNFTNH 201
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.130 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,848,003
Number of Sequences: 539616
Number of extensions: 969778
Number of successful extensions: 4069
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 4019
Number of HSP's gapped (non-prelim): 68
length of query: 89
length of database: 191,569,459
effective HSP length: 59
effective length of query: 30
effective length of database: 159,732,115
effective search space: 4791963450
effective search space used: 4791963450
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)