Query 043153
Match_columns 89
No_of_seqs 104 out of 257
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 13:22:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043153.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043153hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0233 Vacuolar H+-ATPase V0 99.8 6.2E-21 1.4E-25 143.8 -0.4 65 25-89 24-88 (196)
2 TIGR01100 V_ATP_synt_C vacuola 99.5 2E-15 4.4E-20 104.9 2.4 47 42-88 1-47 (108)
3 KOG0232 Vacuolar H+-ATPase V0 99.4 4E-14 8.8E-19 104.3 2.3 53 35-88 2-54 (156)
4 PRK06558 V-type ATP synthase s 98.8 2.5E-09 5.3E-14 78.2 3.7 57 32-88 5-61 (159)
5 PRK08344 V-type ATP synthase s 98.6 4E-08 8.7E-13 71.7 2.7 45 43-87 2-46 (157)
6 PRK06649 V-type ATP synthase s 98.3 4E-07 8.6E-12 66.3 2.8 39 43-84 3-41 (143)
7 PRK09621 V-type ATP synthase s 98.1 2.1E-06 4.5E-11 61.9 3.3 43 43-85 4-46 (141)
8 PF00137 ATP-synt_C: ATP synth 98.1 3.5E-06 7.7E-11 52.8 2.8 46 43-88 1-46 (66)
9 PRK14893 V-type ATP synthase s 97.2 0.00029 6.3E-09 51.8 2.8 46 42-87 9-54 (161)
10 PRK06271 V-type ATP synthase s 97.2 0.00024 5.2E-09 54.0 2.2 45 44-88 1-45 (213)
11 PRK06271 V-type ATP synthase s 95.6 0.01 2.3E-07 45.1 2.9 47 40-87 69-115 (213)
12 COG0636 AtpE F0F1-type ATP syn 95.1 0.028 6E-07 37.0 3.2 44 43-86 8-55 (79)
13 PRK07354 F0F1 ATP synthase sub 92.6 0.2 4.4E-06 33.1 3.7 42 43-84 8-49 (81)
14 PRK13469 F0F1 ATP synthase sub 91.4 0.31 6.7E-06 32.1 3.5 40 43-83 10-49 (79)
15 PRK14893 V-type ATP synthase s 91.2 0.24 5.2E-06 36.5 3.1 44 42-85 90-133 (161)
16 PRK13471 F0F1 ATP synthase sub 90.5 0.51 1.1E-05 31.7 3.9 41 43-83 15-55 (85)
17 PRK08344 V-type ATP synthase s 90.3 0.34 7.3E-06 35.5 3.2 45 42-86 88-133 (157)
18 PRK06251 V-type ATP synthase s 89.9 0.33 7.2E-06 33.7 2.7 42 44-85 36-77 (102)
19 PRK06558 V-type ATP synthase s 89.4 0.43 9.2E-06 35.1 3.1 45 42-86 91-135 (159)
20 CHL00061 atpH ATP synthase CF0 88.5 0.83 1.8E-05 30.3 3.7 41 43-83 8-48 (81)
21 PRK09621 V-type ATP synthase s 87.6 0.67 1.5E-05 33.5 3.1 45 42-86 77-121 (141)
22 PRK13468 F0F1 ATP synthase sub 84.5 1.6 3.6E-05 29.0 3.5 40 43-82 8-47 (82)
23 TIGR03322 alt_F1F0_F0_C altern 83.8 1.8 4E-05 29.1 3.6 39 43-81 9-47 (86)
24 PRK07159 F0F1 ATP synthase sub 83.6 1.5 3.2E-05 30.5 3.1 40 43-83 31-70 (100)
25 PRK06876 F0F1 ATP synthase sub 83.2 1.9 4.1E-05 28.6 3.4 41 43-83 7-47 (78)
26 PRK05880 F0F1 ATP synthase sub 81.7 2.4 5.3E-05 28.3 3.5 41 43-83 8-48 (81)
27 PRK07558 F0F1 ATP synthase sub 80.7 2.5 5.3E-05 27.7 3.2 38 43-81 6-43 (74)
28 PRK08482 F0F1 ATP synthase sub 80.4 2.8 6.1E-05 29.2 3.6 41 43-83 31-71 (105)
29 PRK13464 F0F1 ATP synthase sub 75.8 4.3 9.3E-05 28.3 3.4 41 43-83 14-54 (101)
30 MTH00222 ATP9 ATP synthase F0 67.5 8 0.00017 25.5 3.1 40 43-83 8-47 (77)
31 PRK06649 V-type ATP synthase s 58.4 13 0.00028 27.3 3.1 45 42-86 78-122 (143)
32 PF04995 CcmD: Heme exporter p 56.6 17 0.00037 21.2 2.9 24 38-61 3-26 (46)
33 PF11947 DUF3464: Protein of u 54.9 14 0.0003 27.3 2.8 24 43-66 98-121 (153)
34 KOG4619 Uncharacterized conser 53.0 18 0.00039 25.4 3.0 40 46-86 12-62 (105)
35 PF04971 Lysis_S: Lysis protei 51.3 20 0.00043 23.6 2.8 27 32-58 22-48 (68)
36 PRK13467 F0F1 ATP synthase sub 49.2 22 0.00047 22.9 2.7 33 51-83 7-39 (66)
37 TIGR03141 cytochro_ccmD heme e 45.7 37 0.0008 19.8 3.1 23 38-60 4-26 (45)
38 PRK13466 F0F1 ATP synthase sub 40.4 35 0.00076 21.9 2.7 34 50-83 6-39 (66)
39 PRK10404 hypothetical protein; 39.8 33 0.00072 23.3 2.6 22 35-59 75-96 (101)
40 PRK10132 hypothetical protein; 35.2 41 0.00089 23.2 2.5 22 35-59 81-102 (108)
41 TIGR00261 traB pheromone shutd 34.4 41 0.00088 27.9 2.8 25 46-71 351-375 (380)
42 PF05957 DUF883: Bacterial pro 33.4 54 0.0012 21.1 2.8 20 37-59 70-89 (94)
43 PHA00024 IX minor coat protein 32.7 61 0.0013 18.7 2.6 18 40-57 6-23 (33)
44 PRK07874 F0F1 ATP synthase sub 30.6 60 0.0013 21.7 2.6 33 51-83 22-54 (80)
45 PF12301 CD99L2: CD99 antigen 27.8 50 0.0011 24.6 2.1 18 45-62 117-134 (169)
46 PRK00733 hppA membrane-bound p 25.3 58 0.0013 29.3 2.4 19 47-65 587-605 (666)
47 PF05371 Phage_Coat_Gp8: Phage 23.9 1.3E+02 0.0027 19.0 3.1 27 38-64 17-43 (52)
48 PRK01100 putative accessory ge 23.6 53 0.0012 24.5 1.6 17 5-21 135-154 (210)
49 PF12270 Cyt_c_ox_IV: Cytochro 23.2 1.6E+02 0.0035 21.4 4.0 33 38-70 84-116 (137)
50 PF03030 H_PPase: Inorganic H+ 23.0 1.4E+02 0.003 26.9 4.3 58 7-65 557-630 (682)
51 PF02063 MARCKS: MARCKS family 21.1 32 0.00069 28.1 0.0 11 8-18 131-143 (294)
52 COG5613 Uncharacterized conser 20.4 1.3E+02 0.0028 25.7 3.4 35 42-76 181-215 (400)
53 PLN02277 H(+) -translocating i 20.1 75 0.0016 28.9 2.1 20 46-65 655-674 (730)
54 TIGR00931 antiport_nhaC Na+/H+ 20.0 1.2E+02 0.0027 25.2 3.2 31 36-66 98-129 (454)
No 1
>KOG0233 consensus Vacuolar H+-ATPase V0 sector, subunit c'' [Energy production and conversion]
Probab=99.79 E-value=6.2e-21 Score=143.81 Aligned_cols=65 Identities=55% Similarity=0.952 Sum_probs=62.6
Q ss_pred ccccchHHhhhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccchhccccccC
Q 043153 25 LGESSSWSRALVKISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLIRYF 89 (89)
Q Consensus 25 ~g~~~~~~~~~~~~sP~~fg~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~~KNLIpV~ 89 (89)
.|+.++|++++.+.+||+|+.+||++|+.||++|||||++.+|+++.|+||++|||++||||+|.
T Consensus 24 ~g~~~~~g~fl~~tsp~~wa~lGI~l~ialSv~GaawGi~~tGssiiGggVkAPRI~TKnLisII 88 (196)
T KOG0233|consen 24 YGERFDLGWFLLRTSPYMWASLGIALCIALSVLGAAWGIYITGSSIIGGGVKAPRIKTKNLISII 88 (196)
T ss_pred ccccceeeeeeccCChhHHHHhhHHHhhhhhhhhhheeEEEecceeecCcccCCcccccceEEEE
Confidence 36899999999999999999999999999999999999999999999999999999999999973
No 2
>TIGR01100 V_ATP_synt_C vacuolar ATP synthase 16 kDa proteolipid subunit. The principal role V-ATPases are the acidification of intracellular compartments of eukaryotic cells.
Probab=99.54 E-value=2e-15 Score=104.85 Aligned_cols=47 Identities=30% Similarity=0.499 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccchhcccccc
Q 043153 42 TFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLIRY 88 (89)
Q Consensus 42 ~fg~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~~KNLIpV 88 (89)
||+++|+++|++||++|||||++++|++++++||++||+.+|||||+
T Consensus 1 ~~~~lG~a~a~~ls~iGsA~G~~~aG~~~a~~gv~~P~~~~k~lI~v 47 (108)
T TIGR01100 1 FFGVMGAAAALVFSALGAAYGTAKSGVGIAAMGVMRPELIMKSIIPV 47 (108)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhcCHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999997
No 3
>KOG0232 consensus Vacuolar H+-ATPase V0 sector, subunits c/c' [Energy production and conversion]
Probab=99.43 E-value=4e-14 Score=104.26 Aligned_cols=53 Identities=28% Similarity=0.533 Sum_probs=51.2
Q ss_pred hhhcCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccchhcccccc
Q 043153 35 LVKISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLIRY 88 (89)
Q Consensus 35 ~~~~sP~~fg~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~~KNLIpV 88 (89)
+|.++|| |+.+|.+.+++||.+||||||+++|.+|+.+++++|++.||++|||
T Consensus 2 ~p~ya~f-f~~~g~~~a~v~s~lgaa~Gtak~g~GI~~~~v~rpelimkSiiPv 54 (156)
T KOG0232|consen 2 SPEYAPF-FGIMGAAAAMVFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPV 54 (156)
T ss_pred CcchhhH-HHHhhHHHHHHHHHHHHHHhhhhcchhhhhhhhcChHHHHHHHHHH
Confidence 5789996 9999999999999999999999999999999999999999999997
No 4
>PRK06558 V-type ATP synthase subunit K; Validated
Probab=98.84 E-value=2.5e-09 Score=78.15 Aligned_cols=57 Identities=28% Similarity=0.385 Sum_probs=51.2
Q ss_pred HhhhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccchhcccccc
Q 043153 32 SRALVKISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLIRY 88 (89)
Q Consensus 32 ~~~~~~~sP~~fg~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~~KNLIpV 88 (89)
.+++....|++|+++|++++++++.+|++||+.++|.+.+++..++|+..+|++|++
T Consensus 5 ~~~~~~~~~~~~~~lGa~laigla~iGsa~G~g~ag~a~~~~~a~~Pe~~~k~lI~~ 61 (159)
T PRK06558 5 ANFFTQNGGAFFAALGAALAVGLSGIGSAKGVGKAGEAAAGLLTEEPEKFGKALILQ 61 (159)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 344555567789999999999999999999999999999999999999999999875
No 5
>PRK08344 V-type ATP synthase subunit K; Validated
Probab=98.56 E-value=4e-08 Score=71.69 Aligned_cols=45 Identities=29% Similarity=0.467 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccchhccccc
Q 043153 43 FSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLIR 87 (89)
Q Consensus 43 fg~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~~KNLIp 87 (89)
|+++|+++|++++.+|+|||+.++|.+.++..+++||+.+|++|+
T Consensus 2 ~~~lG~~la~gls~iGsa~G~g~ag~aa~g~~~~~P~~~~~~li~ 46 (157)
T PRK08344 2 YVALGAALAAGLAGAASSFGVGIAGSAAAGAVAEDEKNFRNALIL 46 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999985
No 6
>PRK06649 V-type ATP synthase subunit K; Validated
Probab=98.31 E-value=4e-07 Score=66.31 Aligned_cols=39 Identities=26% Similarity=0.372 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccchhcc
Q 043153 43 FSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKN 84 (89)
Q Consensus 43 fg~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~~KN 84 (89)
|+++|++++++|+.+|+|||+.++|. +..|+.+||. +||
T Consensus 3 ~g~lG~a~a~~la~iGSA~G~g~aG~--Aa~Gv~~~~~-~~~ 41 (143)
T PRK06649 3 IGLIGAAAALGISAIGSALGMGAAGM--AAIGAWKRCY-MQG 41 (143)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHH--HHHhHccHhh-hcC
Confidence 79999999999999999999999999 8889999998 998
No 7
>PRK09621 V-type ATP synthase subunit K; Provisional
Probab=98.13 E-value=2.1e-06 Score=61.93 Aligned_cols=43 Identities=23% Similarity=0.372 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccchhccc
Q 043153 43 FSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNL 85 (89)
Q Consensus 43 fg~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~~KNL 85 (89)
++++|+++++++|.+|+|||+.++|.+-+|.-.++|+...|++
T Consensus 4 ~~~~G~a~a~~ls~iGsa~G~~~aG~a~~G~~~e~p~~~~~~~ 46 (141)
T PRK09621 4 MSVVGPALAMGLAMIGSAIGCGMAGVASHAVMSRIDEGHGKII 46 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhhHH
Confidence 6889999999999999999999999999998888898777764
No 8
>PF00137 ATP-synt_C: ATP synthase subunit C; InterPro: IPR002379 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases) and V-ATPases (or V1V0-ATPases) are each composed of two linked complexes: the F1 or V1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0 or V0 complex that forms the membrane-spanning pore. The F- and V-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. This entry represents subunit C (also called subunit 9, or proteolipid in F-ATPases, or the 16 kDa proteolipid in V-ATPases) found in the F0 or V0 complex of F- and V-ATPases, respectively. In F-ATPases, ten C subunits form an oligomeric ring that makes up the F0 rotor. The flux of protons through the ATPase channel drives the rotation of the C subunit ring, which in turn is coupled to the rotation of the F1 complex gamma subunit rotor due to the permanent binding between the gamma and epsilon subunits of F1 and the C subunit ring of F0. The sequential protonation and deprotonation of Asp61 of subunit C is coupled to the stepwise movement of the rotor []. In V-ATPases, there are three proteolipid subunits (c, c' and c'') that form part of the proton-conducting pore, each containing a buried glutamic acid residue that is essential for proton transport, and together they form a hexameric ring spanning the membrane [, ]. Structurally, the c subunits consist of a two antiparallel transmembrane helices. Both helices of one c subunit are connected by a loop on the cytoplasmic side []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 3AOU_D 2DB4_H 2BL2_C 2CYD_A 2XQT_A 2XQS_A 2XQU_E 1WU0_A 1ATY_A 1C17_A ....
Probab=98.05 E-value=3.5e-06 Score=52.80 Aligned_cols=46 Identities=35% Similarity=0.593 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccchhcccccc
Q 043153 43 FSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLIRY 88 (89)
Q Consensus 43 fg~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~~KNLIpV 88 (89)
|+++|.+++++++.+|++||+.+++.+.+++..++|++.+|.++.+
T Consensus 1 ~~~l~agl~~gl~~~gsa~g~g~~~~~~~~~~a~~p~~~~~~li~~ 46 (66)
T PF00137_consen 1 LAYLGAGLAVGLAAIGSAIGQGIAGSAAIGAIARQPELFTKMLIGA 46 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhH
Confidence 6899999999999999999999999999999999999999988753
No 9
>PRK14893 V-type ATP synthase subunit K; Provisional
Probab=97.20 E-value=0.00029 Score=51.78 Aligned_cols=46 Identities=28% Similarity=0.486 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccchhccccc
Q 043153 42 TFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLIR 87 (89)
Q Consensus 42 ~fg~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~~KNLIp 87 (89)
-+.++|++++++++.+|++||+.++|...+++-.|+|+...+++|+
T Consensus 9 ~~~~lGagla~gla~iGa~iG~g~~~~~~~~~iar~Pe~~~~~li~ 54 (161)
T PRK14893 9 ALAAIGAGVAVGFAGLGSGLGQGIAAAGSVGAVAEDSDMFARGIIF 54 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 4789999999999999999999999999999999999999888775
No 10
>PRK06271 V-type ATP synthase subunit K; Validated
Probab=97.16 E-value=0.00024 Score=53.99 Aligned_cols=45 Identities=31% Similarity=0.468 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccchhcccccc
Q 043153 44 SAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLIRY 88 (89)
Q Consensus 44 g~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~~KNLIpV 88 (89)
+.+|++++++++.+|++||+.++|...++.-.|+|+...|++|++
T Consensus 1 ~~igagla~glaa~Ga~~G~g~~g~a~~~~~ar~Pe~~~~~li~~ 45 (213)
T PRK06271 1 GAIGAGLAVGIAGLGSGIGAGITGASGAGVVAEDPNKFGTAIVFQ 45 (213)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 357999999999999999999999999999999999999998864
No 11
>PRK06271 V-type ATP synthase subunit K; Validated
Probab=95.63 E-value=0.01 Score=45.13 Aligned_cols=47 Identities=23% Similarity=0.334 Sum_probs=43.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccchhccccc
Q 043153 40 PYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLIR 87 (89)
Q Consensus 40 P~~fg~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~~KNLIp 87 (89)
|.-|+++|++++++++.+ ++||.-++|.+-++.-.++||...|++|.
T Consensus 69 ~~g~~~lgagL~vGla~~-sa~g~G~~g~a~~~a~a~~p~~f~~~li~ 115 (213)
T PRK06271 69 APEWAMLAAGLAVGLAGL-SAIGQGIAASAGLGAVAEDDSIFGKAMVF 115 (213)
T ss_pred HhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 446999999999999999 67999999999999999999999999875
No 12
>COG0636 AtpE F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K [Energy production and conversion]
Probab=95.09 E-value=0.028 Score=36.96 Aligned_cols=44 Identities=32% Similarity=0.569 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCcc----chhcccc
Q 043153 43 FSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPR----ITSKNLI 86 (89)
Q Consensus 43 fg~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pr----i~~KNLI 86 (89)
|.++|.++++++..+|+++|.-+.+..-+.+-.+.|+ +.+|-++
T Consensus 8 ~~~i~agl~vGla~lg~gig~G~~~~~~~~~~Ar~P~~~~~l~~~~~i 55 (79)
T COG0636 8 LALIGAGLAVGLAALGAGIGQGIIGAAAVEAVARQPEAAGKLFGKMFI 55 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhHHHHHHH
Confidence 6789999999999999999999999999999999999 6666543
No 13
>PRK07354 F0F1 ATP synthase subunit C; Validated
Probab=92.63 E-value=0.2 Score=33.07 Aligned_cols=42 Identities=19% Similarity=0.325 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccchhcc
Q 043153 43 FSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKN 84 (89)
Q Consensus 43 fg~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~~KN 84 (89)
+.++|.+++++++.+|+++|.-..+.+-+.+--|.|+...|-
T Consensus 8 ~~~igagl~~Gla~lgagig~G~~~~~~~~~iArqPe~~~~~ 49 (81)
T PRK07354 8 ASVVAAALAVGLAAIGPGIGQGNAAGGAVEGIARQPEAEGKI 49 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHhhhh
Confidence 578899999999999999999999999999999999976553
No 14
>PRK13469 F0F1 ATP synthase subunit C; Provisional
Probab=91.43 E-value=0.31 Score=32.06 Aligned_cols=40 Identities=33% Similarity=0.466 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccchhc
Q 043153 43 FSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSK 83 (89)
Q Consensus 43 fg~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~~K 83 (89)
..++|.++++ ++.+|+++|.-..+..-+++-.+.|+..-|
T Consensus 10 ~~~igagla~-laalGagig~G~~~~~a~~a~arqPe~~g~ 49 (79)
T PRK13469 10 MSAIGAGIAA-LAGIGAGIGIGIATGKAVEAVGRQPEASGK 49 (79)
T ss_pred HHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHcCchHHHh
Confidence 5778999999 999999999999999999999999985433
No 15
>PRK14893 V-type ATP synthase subunit K; Provisional
Probab=91.19 E-value=0.24 Score=36.48 Aligned_cols=44 Identities=32% Similarity=0.550 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccchhccc
Q 043153 42 TFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNL 85 (89)
Q Consensus 42 ~fg~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~~KNL 85 (89)
-|.++|.+++++++.+|+++|.-+++..-++.=.+.|+...|-+
T Consensus 90 ~~~~lgagL~~Gla~~gsgig~G~~~~a~i~~iar~Pe~~~~~l 133 (161)
T PRK14893 90 GLVAIGAGAAIGFAGLGSGMGQGIASASSVGAVVEDPDMFARGI 133 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 48899999999999999999999999999999999999776644
No 16
>PRK13471 F0F1 ATP synthase subunit C; Provisional
Probab=90.48 E-value=0.51 Score=31.74 Aligned_cols=41 Identities=20% Similarity=0.377 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccchhc
Q 043153 43 FSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSK 83 (89)
Q Consensus 43 fg~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~~K 83 (89)
..++|.+++++++.+|++.|.-..+...+++=.|.|+..-|
T Consensus 15 ~~~igagla~glaaiGagiG~G~~~~~a~~avaRqPe~~g~ 55 (85)
T PRK13471 15 GKYIGAGLCMGIGAIGPGIGEGNIGAHAMDAMARQPEMVGT 55 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcChHHHhh
Confidence 56789999999999999999999999999999999986543
No 17
>PRK08344 V-type ATP synthase subunit K; Validated
Probab=90.30 E-value=0.34 Score=35.51 Aligned_cols=45 Identities=24% Similarity=0.352 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCc-cchhcccc
Q 043153 42 TFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAP-RITSKNLI 86 (89)
Q Consensus 42 ~fg~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~P-ri~~KNLI 86 (89)
-|.++|.+++++++.+|+++|.-+.+.+-+.+--++| ++..+-+|
T Consensus 88 g~~~i~aGL~vGla~l~sgig~G~v~a~~i~~~ar~P~~l~~~~ii 133 (157)
T PRK08344 88 ALALLGAGLLVGLAELLSAIPQGIICASGIGALPRTPGKTFTQTII 133 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 4688999999999999999999999999999999999 87776554
No 18
>PRK06251 V-type ATP synthase subunit K; Validated
Probab=89.91 E-value=0.33 Score=33.71 Aligned_cols=42 Identities=21% Similarity=0.378 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccchhccc
Q 043153 44 SAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNL 85 (89)
Q Consensus 44 g~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~~KNL 85 (89)
.++|.++++++..+|+++|.-..|..-+++-.++|+...+-+
T Consensus 36 ~~igaGLavGLaaigsgiG~G~~~aaai~aiAr~Pe~~g~~i 77 (102)
T PRK06251 36 INIGAGLAVGLAAIGAGIAVGMAAAAGIGVLTERRDMFGTVL 77 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHH
Confidence 457889999999999999999999999999899999766544
No 19
>PRK06558 V-type ATP synthase subunit K; Validated
Probab=89.41 E-value=0.43 Score=35.05 Aligned_cols=45 Identities=18% Similarity=0.116 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccchhcccc
Q 043153 42 TFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLI 86 (89)
Q Consensus 42 ~fg~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~~KNLI 86 (89)
-|..+|.+++++++.+|++++.-++|.+-+.+--++|+...|-++
T Consensus 91 g~~~l~agL~vGl~~l~sgi~~G~~~a~~~~a~a~~pe~~~~~li 135 (159)
T PRK06558 91 GLAYFAACLPIAIVGLFSAISQGKVAAAGIQILAKRPEEFTKGII 135 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 578899999999999999999999999888888899998877554
No 20
>CHL00061 atpH ATP synthase CF0 C subunit
Probab=88.45 E-value=0.83 Score=30.34 Aligned_cols=41 Identities=20% Similarity=0.348 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccchhc
Q 043153 43 FSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSK 83 (89)
Q Consensus 43 fg~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~~K 83 (89)
...+|.+++++++.+|+++|.-..+..-+.+-.|.|+..-|
T Consensus 8 ~~~i~agl~~Gla~lgagig~G~~~~~a~~aiarqPe~~~~ 48 (81)
T CHL00061 8 ASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGK 48 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHhhh
Confidence 46789999999999999999999999999999999985433
No 21
>PRK09621 V-type ATP synthase subunit K; Provisional
Probab=87.58 E-value=0.67 Score=33.52 Aligned_cols=45 Identities=24% Similarity=0.286 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccchhcccc
Q 043153 42 TFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLI 86 (89)
Q Consensus 42 ~fg~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~~KNLI 86 (89)
-|..++.+++++++.+++++|.-+.+.+-+..=.+.|+...|-+|
T Consensus 77 ~~~~l~aGL~vGla~l~sgigqG~v~a~~i~a~arqPe~~~k~~i 121 (141)
T PRK09621 77 ALSGIAIGISVGIALLLSAIMQGKCCASAIQAYARSSEIYGKSFA 121 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 367788899999999999999999999999999999999888664
No 22
>PRK13468 F0F1 ATP synthase subunit C; Provisional
Probab=84.48 E-value=1.6 Score=28.99 Aligned_cols=40 Identities=18% Similarity=0.257 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccchh
Q 043153 43 FSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITS 82 (89)
Q Consensus 43 fg~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~~ 82 (89)
..++|.++++++..+|+++|.-+.+.+-+.+=-|.|+..-
T Consensus 8 ~~~igaglaigla~lgagig~G~~~~~a~~~iaRqPe~~g 47 (82)
T PRK13468 8 VSIIAAGLAVSIGAIGPALAEGRAVAAALDAIAQQPDAAG 47 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHH
Confidence 5678999999999999999999999999999999998644
No 23
>TIGR03322 alt_F1F0_F0_C alternate F1F0 ATPase, F0 subunit C. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F0 subunit C of this apparent second ATP synthase.
Probab=83.78 E-value=1.8 Score=29.10 Aligned_cols=39 Identities=18% Similarity=0.240 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccch
Q 043153 43 FSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRIT 81 (89)
Q Consensus 43 fg~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~ 81 (89)
+.++|.++++++..+|+++|.-..+..-+.+--|.|+..
T Consensus 9 ~~~igagl~~gla~igagiG~G~~~~~a~e~iaRqPe~~ 47 (86)
T TIGR03322 9 ASIVTAGLTIAIGSIGPALGEGRAVAQALTALAQQPDAS 47 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHH
Confidence 677899999999999999999999999999989999875
No 24
>PRK07159 F0F1 ATP synthase subunit C; Validated
Probab=83.63 E-value=1.5 Score=30.48 Aligned_cols=40 Identities=20% Similarity=0.325 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccchhc
Q 043153 43 FSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSK 83 (89)
Q Consensus 43 fg~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~~K 83 (89)
+.++|.++++ +..+|+++|.-..+..-+.+--|.|+...+
T Consensus 31 ~~~igaGLa~-laaiGagiG~G~~~~~a~eaiARqPea~~~ 70 (100)
T PRK07159 31 AAYIGAGLAM-IGVIGVGLGQGYAFGKAVEAIARNPEAQKQ 70 (100)
T ss_pred HHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHhChHHHHh
Confidence 4678888888 899999999999999999999999986443
No 25
>PRK06876 F0F1 ATP synthase subunit C; Validated
Probab=83.20 E-value=1.9 Score=28.57 Aligned_cols=41 Identities=37% Similarity=0.632 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccchhc
Q 043153 43 FSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSK 83 (89)
Q Consensus 43 fg~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~~K 83 (89)
..++|.++++++..+|++.|.-..+..-+.+=-|.|+..-|
T Consensus 7 ~~~i~agla~glaaiGagiG~G~~~~~a~~~iaRqPe~~~~ 47 (78)
T PRK06876 7 LTAIAAAIAIGLAALGAAIGIGLLGGKFLEGAARQPELIPM 47 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHh
Confidence 46788899999999999999999999999999999986543
No 26
>PRK05880 F0F1 ATP synthase subunit C; Validated
Probab=81.67 E-value=2.4 Score=28.29 Aligned_cols=41 Identities=22% Similarity=0.368 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccchhc
Q 043153 43 FSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSK 83 (89)
Q Consensus 43 fg~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~~K 83 (89)
..++|.++++++..+|++.|+-......+-+--|.|+..-+
T Consensus 8 ~~~igagla~glaaiGagiG~G~v~~~a~eaiaRqPEa~~~ 48 (81)
T PRK05880 8 GALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGR 48 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHh
Confidence 46789999999999999999999999999888899986543
No 27
>PRK07558 F0F1 ATP synthase subunit C; Validated
Probab=80.66 E-value=2.5 Score=27.72 Aligned_cols=38 Identities=24% Similarity=0.393 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccch
Q 043153 43 FSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRIT 81 (89)
Q Consensus 43 fg~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~ 81 (89)
..++|.++++ +..+|++.|+-..+...+.+=.|.|+..
T Consensus 6 ~~~igagla~-laa~GagiG~G~~~~~a~e~iaRqPe~~ 43 (74)
T PRK07558 6 LKFIGAGLAC-IGMAGAALGVGNIFGNYLSGALRNPSAA 43 (74)
T ss_pred HHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHcCchHH
Confidence 5678888888 9999999999999999999999999854
No 28
>PRK08482 F0F1 ATP synthase subunit C; Validated
Probab=80.39 E-value=2.8 Score=29.21 Aligned_cols=41 Identities=24% Similarity=0.527 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccchhc
Q 043153 43 FSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSK 83 (89)
Q Consensus 43 fg~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~~K 83 (89)
..++|.++++++..+|++.|.-..+...+.+--|.|+..-+
T Consensus 31 ~~~igagla~Glaa~GagiG~G~~~~~a~e~iaRqPe~~~~ 71 (105)
T PRK08482 31 YSVLAAGIGLGIAALGGAIGMGNTAAATIAGTARNPGLGGK 71 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHh
Confidence 56789999999999999999999999999999999987654
No 29
>PRK13464 F0F1 ATP synthase subunit C; Provisional
Probab=75.82 E-value=4.3 Score=28.34 Aligned_cols=41 Identities=22% Similarity=0.485 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccchhc
Q 043153 43 FSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSK 83 (89)
Q Consensus 43 fg~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~~K 83 (89)
..++|.++++++..+|++.|+-......+-+--|.|+..-+
T Consensus 14 ~~~i~agl~iglaaiGagiGiG~v~~~ale~iARQPEa~~~ 54 (101)
T PRK13464 14 LTAVAVALLISLPALGTAIGFGVLGGKYLEGVARQPELGGM 54 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHh
Confidence 46788899999999999999999999999999999987544
No 30
>MTH00222 ATP9 ATP synthase F0 subunit 9; Provisional
Probab=67.45 E-value=8 Score=25.55 Aligned_cols=40 Identities=20% Similarity=0.262 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccchhc
Q 043153 43 FSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSK 83 (89)
Q Consensus 43 fg~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~~K 83 (89)
..++|.++++ +..+|++.|+-......+-+--|.|+..-+
T Consensus 8 ~~~igaGla~-iaa~GagiG~G~~~~~~~e~vaRqPe~~~~ 47 (77)
T MTH00222 8 AKFVGAGAAT-IGAAGSGAGIGTVFGNLIIGYARNPSLKQQ 47 (77)
T ss_pred HHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHcChhhHHh
Confidence 4678888888 899999999999999999999999987654
No 31
>PRK06649 V-type ATP synthase subunit K; Validated
Probab=58.38 E-value=13 Score=27.26 Aligned_cols=45 Identities=11% Similarity=0.183 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccchhcccc
Q 043153 42 TFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLI 86 (89)
Q Consensus 42 ~fg~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~~KNLI 86 (89)
-|..++..++++++.+-+||-.-+++.+=+..=-++||.-.|-++
T Consensus 78 g~~~l~aGL~vGl~gl~Sa~~qG~v~aagi~~~ak~p~~f~~~ii 122 (143)
T PRK06649 78 PWLLLGAGIGGGLAIAASAFAQGKAAAGACDALAETGKGFANYLL 122 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 478999999999999999999999998666666778988777543
No 32
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=56.60 E-value=17 Score=21.21 Aligned_cols=24 Identities=13% Similarity=0.230 Sum_probs=18.0
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHH
Q 043153 38 ISPYTFSAIGIAVAIGVSVLGAAW 61 (89)
Q Consensus 38 ~sP~~fg~lGIa~ai~lS~~GAAy 61 (89)
+++|.|+..|+++.+.+..+...+
T Consensus 3 y~~yVW~sYg~t~~~l~~l~~~~~ 26 (46)
T PF04995_consen 3 YGFYVWSSYGVTALVLAGLIVWSL 26 (46)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999998877776654443
No 33
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=54.90 E-value=14 Score=27.31 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 043153 43 FSAIGIAVAIGVSVLGAAWGIYIT 66 (89)
Q Consensus 43 fg~lGIa~ai~lS~~GAAyGi~kt 66 (89)
..+++-+++.+++++|-+||++-+
T Consensus 98 ~~~~~S~~~Fg~gllGisYGilSa 121 (153)
T PF11947_consen 98 AVLLVSLVFFGLGLLGISYGILSA 121 (153)
T ss_pred HHHHHHHHHHHHHHHhhhhhhccc
Confidence 556677788888999999998754
No 34
>KOG4619 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.03 E-value=18 Score=25.43 Aligned_cols=40 Identities=43% Similarity=0.571 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH---hhhhhhc--------ccccCccchhcccc
Q 043153 46 IGIAVAIGVSVLGAAWGIYI---TGSSLIG--------AAIKAPRITSKNLI 86 (89)
Q Consensus 46 lGIa~ai~lS~~GAAyGi~k---tG~sI~g--------~gV~~Pri~~KNLI 86 (89)
+|+.++|.- ..-||.|... +|+++.| .|++||+++.|.+.
T Consensus 12 ig~il~ist-maaaalgnlisdiaglgla~yve~~~~rlgi~~p~lt~kqld 62 (105)
T KOG4619|consen 12 IGAILAIST-MAAAALGNLISDIAGLGLAGYVEAAAQRLGIKHPDLTPKQLD 62 (105)
T ss_pred HhHHHhHHH-HHHHHHhhHHHHhhcccHHHHHHHHHHHhCCCCCCCCHHHhh
Confidence 444444432 3456677765 4555544 68999999988764
No 35
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=51.34 E-value=20 Score=23.58 Aligned_cols=27 Identities=30% Similarity=0.383 Sum_probs=23.1
Q ss_pred HhhhhhcCchhHHHHHHHHHHHHHHHH
Q 043153 32 SRALVKISPYTFSAIGIAVAIGVSVLG 58 (89)
Q Consensus 32 ~~~~~~~sP~~fg~lGIa~ai~lS~~G 58 (89)
..++..++|-=|+.+|+..++++.+++
T Consensus 22 ~~lld~~sp~qW~aIGvi~gi~~~~lt 48 (68)
T PF04971_consen 22 LQLLDQFSPSQWAAIGVIGGIFFGLLT 48 (68)
T ss_pred HHHHhccCcccchhHHHHHHHHHHHHH
Confidence 557888999899999999999988773
No 36
>PRK13467 F0F1 ATP synthase subunit C; Provisional
Probab=49.17 E-value=22 Score=22.94 Aligned_cols=33 Identities=18% Similarity=0.380 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcccccCccchhc
Q 043153 51 AIGVSVLGAAWGIYITGSSLIGAAIKAPRITSK 83 (89)
Q Consensus 51 ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~~K 83 (89)
++++..+|++.|.-.....-+-+--|.|+..-+
T Consensus 7 ~~GlaaiGagiG~G~v~~~a~e~iaRqPE~~~~ 39 (66)
T PRK13467 7 ALALACMGVSLGEGFLMANLFKSAARQPEMIGQ 39 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHh
Confidence 345566799999999998888888899986543
No 37
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=45.68 E-value=37 Score=19.77 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=16.9
Q ss_pred cCchhHHHHHHHHHHHHHHHHHH
Q 043153 38 ISPYTFSAIGIAVAIGVSVLGAA 60 (89)
Q Consensus 38 ~sP~~fg~lGIa~ai~lS~~GAA 60 (89)
+++|.|+..|+++.+....+...
T Consensus 4 y~~yVW~sYg~t~l~l~~li~~~ 26 (45)
T TIGR03141 4 YAFYVWLAYGITALVLAGLILWS 26 (45)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999777766655443
No 38
>PRK13466 F0F1 ATP synthase subunit C; Provisional
Probab=40.38 E-value=35 Score=21.90 Aligned_cols=34 Identities=26% Similarity=0.495 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcccccCccchhc
Q 043153 50 VAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSK 83 (89)
Q Consensus 50 ~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~~K 83 (89)
+++++..+|++.|.-.....-+-+--|.|+..-|
T Consensus 6 l~~glaa~GagiG~G~~~~~~~e~vaRqPea~~~ 39 (66)
T PRK13466 6 LALGLACLGVSIGEGLLVASYLSSTARQPEMQSK 39 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHh
Confidence 5567889999999988888888888888886544
No 39
>PRK10404 hypothetical protein; Provisional
Probab=39.76 E-value=33 Score=23.34 Aligned_cols=22 Identities=41% Similarity=0.822 Sum_probs=16.4
Q ss_pred hhhcCchhHHHHHHHHHHHHHHHHH
Q 043153 35 LVKISPYTFSAIGIAVAIGVSVLGA 59 (89)
Q Consensus 35 ~~~~sP~~fg~lGIa~ai~lS~~GA 59 (89)
+-.-.| |-.+||+.+++| ++|.
T Consensus 75 yV~e~P--w~avGiaagvGl-llG~ 96 (101)
T PRK10404 75 YVHEKP--WQGIGVGAAVGL-VLGL 96 (101)
T ss_pred HHHhCc--HHHHHHHHHHHH-HHHH
Confidence 344578 899999999888 5553
No 40
>PRK10132 hypothetical protein; Provisional
Probab=35.17 E-value=41 Score=23.25 Aligned_cols=22 Identities=36% Similarity=0.853 Sum_probs=16.6
Q ss_pred hhhcCchhHHHHHHHHHHHHHHHHH
Q 043153 35 LVKISPYTFSAIGIAVAIGVSVLGA 59 (89)
Q Consensus 35 ~~~~sP~~fg~lGIa~ai~lS~~GA 59 (89)
+-.-.| |-.+||+.+++| ++|.
T Consensus 81 ~V~~~P--w~svgiaagvG~-llG~ 102 (108)
T PRK10132 81 FVRERP--WCSVGTAAAVGI-FIGA 102 (108)
T ss_pred HHHhCc--HHHHHHHHHHHH-HHHH
Confidence 444578 899999999888 5554
No 41
>TIGR00261 traB pheromone shutdown-related protein TraB. traB is a plasmid encoded gene that functions in the shutdown of the peptide sex pheromone cPD1 which is produced by the plasmid free recipient cell prior to conjugative transfer in Enterococcus faecalis. Once the recipient acquires the plasmid, production of cPD1 is shut down. The gene product may play another role in the other species in the family.
Probab=34.36 E-value=41 Score=27.87 Aligned_cols=25 Identities=12% Similarity=0.157 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhh
Q 043153 46 IGIAVAIGVSVLGAAWGIYITGSSLI 71 (89)
Q Consensus 46 lGIa~ai~lS~~GAAyGi~ktG~sI~ 71 (89)
+=+.+-..|+++|++.||+.+| .++
T Consensus 351 ~rvllv~~l~nlGs~igt~~~~-~~~ 375 (380)
T TIGR00261 351 FRVLLVAILVNLGSTIGTIYGL-KFL 375 (380)
T ss_pred HHHHHHHHHhhhHHHHHHHHHH-HHH
Confidence 3456778899999999999998 443
No 42
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=33.36 E-value=54 Score=21.07 Aligned_cols=20 Identities=35% Similarity=0.851 Sum_probs=15.2
Q ss_pred hcCchhHHHHHHHHHHHHHHHHH
Q 043153 37 KISPYTFSAIGIAVAIGVSVLGA 59 (89)
Q Consensus 37 ~~sP~~fg~lGIa~ai~lS~~GA 59 (89)
.-.| |..+||+++++| ++|.
T Consensus 70 ~e~P--~~svgiAagvG~-llG~ 89 (94)
T PF05957_consen 70 RENP--WQSVGIAAGVGF-LLGL 89 (94)
T ss_pred HHCh--HHHHHHHHHHHH-HHHH
Confidence 3457 788999999888 5654
No 43
>PHA00024 IX minor coat protein
Probab=32.72 E-value=61 Score=18.68 Aligned_cols=18 Identities=28% Similarity=0.292 Sum_probs=14.0
Q ss_pred chhHHHHHHHHHHHHHHH
Q 043153 40 PYTFSAIGIAVAIGVSVL 57 (89)
Q Consensus 40 P~~fg~lGIa~ai~lS~~ 57 (89)
+|+|+...++.|+.++.+
T Consensus 6 ~~ffgA~ilG~~l~~~Il 23 (33)
T PHA00024 6 GYFFGAYILGWALFYGIL 23 (33)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 467898888888888743
No 44
>PRK07874 F0F1 ATP synthase subunit C; Validated
Probab=30.56 E-value=60 Score=21.66 Aligned_cols=33 Identities=15% Similarity=0.405 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcccccCccchhc
Q 043153 51 AIGVSVLGAAWGIYITGSSLIGAAIKAPRITSK 83 (89)
Q Consensus 51 ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~~K 83 (89)
++++..+|++.|.-......+-+--|.|+..-+
T Consensus 22 g~GlaaiGagiG~G~~~~~a~e~iARqPEa~~~ 54 (80)
T PRK07874 22 GYGLAAIGPGIGVGIVVGKALEGMARQPEMAGQ 54 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHhHHHh
Confidence 344556899999988888888888888876543
No 45
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=27.83 E-value=50 Score=24.59 Aligned_cols=18 Identities=33% Similarity=0.457 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 043153 45 AIGIAVAIGVSVLGAAWG 62 (89)
Q Consensus 45 ~lGIa~ai~lS~~GAAyG 62 (89)
..||+.|++.+++||+-.
T Consensus 117 IaGIvsav~valvGAvsS 134 (169)
T PF12301_consen 117 IAGIVSAVVVALVGAVSS 134 (169)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 368999999999998754
No 46
>PRK00733 hppA membrane-bound proton-translocating pyrophosphatase; Validated
Probab=25.29 E-value=58 Score=29.28 Aligned_cols=19 Identities=32% Similarity=0.478 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 043153 47 GIAVAIGVSVLGAAWGIYI 65 (89)
Q Consensus 47 GIa~ai~lS~~GAAyGi~k 65 (89)
|+.+|+..+|-|.||=++|
T Consensus 587 G~~lAi~m~NaGGAWDNAK 605 (666)
T PRK00733 587 GLLLAIFMANAGGAWDNAK 605 (666)
T ss_pred HHHHHHHHcccchhHHHHH
Confidence 7788999999999998876
No 47
>PF05371 Phage_Coat_Gp8: Phage major coat protein, Gp8; InterPro: IPR008020 The major coat protein in the capsid of filamentous bacteriophage forms a helical assembly of about 7000 identical protomers, with each protomer comprised of 46 amino acids, after the cleavage of the signal peptide. Each protomer forms a slightly curved helix that combines to form a tubular structure that encapsulates the viral DNA [].; PDB: 1IFK_A 2C0W_A 2HI5_A 1FDM_A 1IFJ_A 2C0X_A 1IFI_A 1IFD_A 1MZT_A 1IFL_A ....
Probab=23.93 E-value=1.3e+02 Score=18.99 Aligned_cols=27 Identities=33% Similarity=0.325 Sum_probs=20.5
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHH
Q 043153 38 ISPYTFSAIGIAVAIGVSVLGAAWGIY 64 (89)
Q Consensus 38 ~sP~~fg~lGIa~ai~lS~~GAAyGi~ 64 (89)
.....-.++|.+..++.++.|+-|||-
T Consensus 17 L~t~At~~i~~aw~vvv~v~gafigir 43 (52)
T PF05371_consen 17 LGTQATDLIGYAWPVVVLVTGAFIGIR 43 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 333455678888899999999999874
No 48
>PRK01100 putative accessory gene regulator protein; Provisional
Probab=23.64 E-value=53 Score=24.46 Aligned_cols=17 Identities=41% Similarity=0.495 Sum_probs=10.6
Q ss_pred cccCc---hHHHHHHhhhhc
Q 043153 5 TEKNP---KKKKKKLKKMSG 21 (89)
Q Consensus 5 ~~~~~---~~~~~~~~~~~~ 21 (89)
||++| +++||++|+-|-
T Consensus 135 t~nkPi~~~~~rk~lK~~si 154 (210)
T PRK01100 135 TESLPLIGEKLRKTLKRKAM 154 (210)
T ss_pred CccCCCCCHHHHHHHHHHHH
Confidence 56666 666667776553
No 49
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=23.19 E-value=1.6e+02 Score=21.42 Aligned_cols=33 Identities=24% Similarity=0.385 Sum_probs=24.8
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 043153 38 ISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSL 70 (89)
Q Consensus 38 ~sP~~fg~lGIa~ai~lS~~GAAyGi~ktG~sI 70 (89)
+||.-|=-+.++++..+-.+|-|+|-|..-+++
T Consensus 84 FsP~SwWPl~la~~~al~~lGla~g~Wl~~iG~ 116 (137)
T PF12270_consen 84 FSPHSWWPLVLAAAAALVFLGLAFGWWLILIGA 116 (137)
T ss_pred CCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566556677788888888899999987766554
No 50
>PF03030 H_PPase: Inorganic H+ pyrophosphatase; InterPro: IPR004131 Two types of proteins that hydrolyse inorganic pyrophosphate (PPi), very different in both amino acid sequence and structure, have been characterised to date: soluble and membrane-bound proton-pumping pyrophosphatases (sPPases and H(+)-PPases, respectively). sPPases are ubiquitous proteins that hydrolyse PPi to release heat, whereas H+-PPases, so far unidentified in animal and fungal cells, couple the energy of PPi hydrolysis to proton movement across biological membranes [, ]. The latter type is represented by this group of proteins. H+-PPases (3.6.1.1 from EC) are also called vacuolar-type inorganic pyrophosphatases (V-PPase) or pyrophosphate-energised vacuolar membrane proton pumps []. In plants, vacuoles contain two enzymes for acidifying the interior of the vacuole, the V-ATPase and the V-PPase (V is for vacuolar) []. Two distinct biochemical subclasses of H+-PPases have been characterised to date: K+-stimulated and K+-insensitive [, ]. For additional information please see [, ].; GO: 0004427 inorganic diphosphatase activity, 0009678 hydrogen-translocating pyrophosphatase activity, 0015992 proton transport, 0016020 membrane; PDB: 4A01_A.
Probab=22.96 E-value=1.4e+02 Score=26.95 Aligned_cols=58 Identities=22% Similarity=0.213 Sum_probs=33.8
Q ss_pred cCchHHHHHHhhhhccccccccchHHhhhhhcCchhHHH----------------HHHHHHHHHHHHHHHHHHHH
Q 043153 7 KNPKKKKKKLKKMSGSVMLGESSSWSRALVKISPYTFSA----------------IGIAVAIGVSVLGAAWGIYI 65 (89)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~sP~~fg~----------------lGIa~ai~lS~~GAAyGi~k 65 (89)
...|..-+|.=++|++...-|-..-+ +++..+|.+.++ .|+.+|+..+|.|.||=++|
T Consensus 557 g~~~pdy~~cV~I~T~~alkemi~P~-ll~v~~Pi~vg~~~g~~al~G~L~g~~~sG~~~Ai~m~n~GGAWDNAK 630 (682)
T PF03030_consen 557 GKAKPDYARCVDISTRAALKEMILPG-LLAVLAPIVVGFLLGPEALGGLLMGATVSGILLAIFMANAGGAWDNAK 630 (682)
T ss_dssp TSS---HHHHHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 33344445555566655333322222 445556664444 37789999999999998876
No 51
>PF02063 MARCKS: MARCKS family; InterPro: IPR002101 Myristoylated alanine-rich C-kinase substrate (MARCKS) is a predominent cellular substrate for protein kinase C (PKC) that has been implicated in the regulation of brain development, macrophage activation, neuro-secretion and growth factor-dependent mitogenesis [, ]. The N-terminal glycine is the site of myristoylation, which allows effective binding of the protein to the plasma membrane, where it co-localises with PKC []. MARCKS binds calmodulin in a calcium-dependent manner; the region responsible for calcium-binding is highly basic, a domain of about 25 amino acids known as the PSD or effector domain, which also contains the PKC phosphorylation sites and has been shown to contribute to membrane binding. When not phosphorylated, the effector domain can bind to filamentous actin []. It is believed that MARCKS may be a regulated crossbridge between actin and the plasma membrane; modulation of the actin cross-linking activity by calmodulin and phosphorylation, represent a potential convergence of the calcium-calmodulin and PKC signal transduction pathways in regulation of the actin cytoskeleton. MARCKS also contains an MH2 domain of unknown function. MARCKS-related protein (MRP) is similar to MARCKS in terms of properties such as its myristoylation, phosphorylation and calmodulin-binding, and shares a high degree of sequence similarity. The two regions that show the highest similarity are the kinase C phosphorylation site domain and the N-terminal region containing the myristoylation site []. MARCKS and MRP amino acid compositions are similar, but the alanine content of the latter is lower. MARCKS proteins appear to adopt a native unfolded conformation i.e. as randomly folded chains arranged in non-classical extended conformations, in common with other substrates of PKC.; GO: 0005516 calmodulin binding; PDB: 1IWQ_B.
Probab=21.07 E-value=32 Score=28.14 Aligned_cols=11 Identities=73% Similarity=1.065 Sum_probs=0.0
Q ss_pred CchHHHHH--Hhh
Q 043153 8 NPKKKKKK--LKK 18 (89)
Q Consensus 8 ~~~~~~~~--~~~ 18 (89)
.||||||| +||
T Consensus 131 TPKKKKKrFSFKK 143 (294)
T PF02063_consen 131 TPKKKKKRFSFKK 143 (294)
T ss_dssp --------TT---
T ss_pred cchhhcccccccc
Confidence 47787776 555
No 52
>COG5613 Uncharacterized conserved protein [Function unknown]
Probab=20.39 E-value=1.3e+02 Score=25.67 Aligned_cols=35 Identities=23% Similarity=0.346 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc
Q 043153 42 TFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIK 76 (89)
Q Consensus 42 ~fg~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~ 76 (89)
-|+.+++++.++-+.+|+|.|-...-+|..++...
T Consensus 181 afgs~iValimva~gvgaaagA~m~asGa~amalq 215 (400)
T COG5613 181 AFGSLIVALIMVAAGVGAAAGAVMAASGATAMALQ 215 (400)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHH
Confidence 48999999999999999999988877777665543
No 53
>PLN02277 H(+) -translocating inorganic pyrophosphatase
Probab=20.09 E-value=75 Score=28.91 Aligned_cols=20 Identities=30% Similarity=0.458 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 043153 46 IGIAVAIGVSVLGAAWGIYI 65 (89)
Q Consensus 46 lGIa~ai~lS~~GAAyGi~k 65 (89)
.|+.+|+..+|-|.||=++|
T Consensus 655 sGv~lAi~m~NaGGAWDNAK 674 (730)
T PLN02277 655 SGILMALFLNTAGGAWDNAK 674 (730)
T ss_pred HHHHHHHHHhcCchhHHhHH
Confidence 47889999999999998876
No 54
>TIGR00931 antiport_nhaC Na+/H+ antiporter NhaC. A single member of the NhaC family, a protein from Bacillus firmus, has been functionally characterized.It is involved in pH homeostasis and sodium extrusion. Members of the NhaC family are found in both Gram-negative bacteria and Gram-positive bacteria.
Probab=20.05 E-value=1.2e+02 Score=25.18 Aligned_cols=31 Identities=32% Similarity=0.461 Sum_probs=20.4
Q ss_pred hhcCchhHHHHHHHHHHHHH-HHHHHHHHHHh
Q 043153 36 VKISPYTFSAIGIAVAIGVS-VLGAAWGIYIT 66 (89)
Q Consensus 36 ~~~sP~~fg~lGIa~ai~lS-~~GAAyGi~kt 66 (89)
...+|++|-..-..+|..+| ..|.+|||+-+
T Consensus 98 ~~i~p~~~~~~~Fl~~~~~s~~~Gss~gt~~~ 129 (454)
T TIGR00931 98 SIISPEWFAVSTLLICMIVSSFTGTSWGTVGT 129 (454)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 44777755555544444444 88999999866
Done!