Query 043153
Match_columns 89
No_of_seqs 104 out of 257
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 23:38:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043153.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043153hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bl2_A V-type sodium ATP synth 99.3 7.5E-13 2.6E-17 95.0 4.4 57 32-88 3-59 (156)
2 2bl2_A V-type sodium ATP synth 95.7 0.008 2.7E-07 42.8 3.3 46 42-87 89-134 (156)
3 1wu0_A ATP synthase C chain; A 95.1 0.02 7E-07 36.0 3.5 41 43-83 3-43 (72)
4 2xqu_A C15_RING, ATP synthase 95.0 0.014 4.6E-07 37.6 2.5 40 42-81 8-47 (82)
5 2x2v_A ATP synthase subunit C; 94.1 0.049 1.7E-06 33.9 3.4 39 45-83 3-41 (69)
6 2wgm_A ATP synthase subunit C, 88.7 0.19 6.6E-06 32.7 1.8 38 42-80 12-49 (89)
7 1a91_A F1FO ATPase subunit C; 87.9 0.66 2.3E-05 29.5 3.9 39 44-82 9-47 (79)
8 2xnd_J ATP synthase lipid-bind 79.2 0.35 1.2E-05 30.2 -0.2 40 43-83 5-44 (72)
9 4a01_A Proton pyrophosphatase; 43.4 18 0.00063 31.7 3.5 54 12-66 626-695 (766)
10 4f4s_A ATP synthase subunit 9, 27.8 25 0.00085 22.4 1.4 39 44-83 8-46 (76)
11 2yvc_D Neprilysin; protein-pep 24.4 15 0.00053 19.3 -0.0 13 4-16 9-21 (26)
12 1hgv_A PH75 inovirus major coa 23.8 72 0.0025 18.6 2.8 12 49-63 28-39 (46)
13 1ycp_F Fibrinopeptide A-alpha; 20.2 27 0.00092 18.5 0.4 12 71-82 11-22 (26)
No 1
>2bl2_A V-type sodium ATP synthase subunit K; V-type ATPase, K-ring, membrane rotor, sodium transporter, H ION transport, hydrolase, transmembrane; HET: LHG UMQ; 2.1A {Enterococcus hirae} PDB: 2cyd_A* 2db4_A* 3aou_A*
Probab=99.33 E-value=7.5e-13 Score=95.03 Aligned_cols=57 Identities=21% Similarity=0.264 Sum_probs=53.6
Q ss_pred HhhhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccchhcccccc
Q 043153 32 SRALVKISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLIRY 88 (89)
Q Consensus 32 ~~~~~~~sP~~fg~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~~KNLIpV 88 (89)
.+++.+++|++|+++|++++++|+++|+|||+.++|.+++++.+++||+.+|++||+
T Consensus 3 ~~~~~~~~~~~~~~lGa~la~~ls~iGaa~G~~~aG~a~~g~~~~~P~~~~k~li~~ 59 (156)
T 2bl2_A 3 DYLITQNGGMVFAVLAMATATIFSGIGSAKGVGMTGEAAAALTTSQPEKFGQALILQ 59 (156)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 456778888899999999999999999999999999999999999999999999985
No 2
>2bl2_A V-type sodium ATP synthase subunit K; V-type ATPase, K-ring, membrane rotor, sodium transporter, H ION transport, hydrolase, transmembrane; HET: LHG UMQ; 2.1A {Enterococcus hirae} PDB: 2cyd_A* 2db4_A* 3aou_A*
Probab=95.66 E-value=0.008 Score=42.80 Aligned_cols=46 Identities=17% Similarity=0.158 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccchhccccc
Q 043153 42 TFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLIR 87 (89)
Q Consensus 42 ~fg~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~~KNLIp 87 (89)
-|.++|.+++++++.+|+++|+-+.+.+.+.+-.+.||...|.+|.
T Consensus 89 g~~~igagl~~Gla~lgagigiG~v~~~~i~a~arqPe~~~~~ii~ 134 (156)
T 2bl2_A 89 GLNFLGASLPIAFTGLFSGIAQGKVAAAGIQILAKKPEHATKGIIF 134 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence 4778999999999999999999999999999999999999987653
No 3
>1wu0_A ATP synthase C chain; ATPase, membrane protein, hydrogen ION transport, hydrolase; NMR {Bacillus SP}
Probab=95.12 E-value=0.02 Score=35.97 Aligned_cols=41 Identities=24% Similarity=0.407 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccchhc
Q 043153 43 FSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSK 83 (89)
Q Consensus 43 fg~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~~K 83 (89)
+.++|.+++++++.+|+++|+-+.+..-+.+-.+.|+...|
T Consensus 3 ~~~igagl~~Gla~igagig~G~~~~~~~~~~arqPe~~~~ 43 (72)
T 1wu0_A 3 LGVLAAAIAVGLGALGAGIGNGLIVSRTIEGIARQPELRPV 43 (72)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHhhh
Confidence 56789999999999999999999999999999999996554
No 4
>2xqu_A C15_RING, ATP synthase C chain; membrane protein, F1FO-ATP synthase rotor, ION (PROT translocation; HET: FME CVM; 1.84A {Arthrospira platensis} PDB: 2xqs_A* 2xqt_A* 2wie_A* 2w5j_A
Probab=94.99 E-value=0.014 Score=37.60 Aligned_cols=40 Identities=20% Similarity=0.357 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccch
Q 043153 42 TFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRIT 81 (89)
Q Consensus 42 ~fg~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~ 81 (89)
.+.++|.+++++++.+|+++|+-+.+..-+.+-.+.|+..
T Consensus 8 ~~~~igagl~~Gla~igagig~G~~~~~~i~a~arqPe~~ 47 (82)
T 2xqu_A 8 AASVIAAALAVGIGSIGPGLGQGQAAGQAVEGIARQPEAE 47 (82)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHh
Confidence 4788999999999999999999999999999999999953
No 5
>2x2v_A ATP synthase subunit C; membrane protein, ION transport, ATP synthesis, transmembran CF(0), membrane, transport, C-ring rotor; HET: FME DPV; 2.50A {Bacillus pseudofirmus OF4}
Probab=94.12 E-value=0.049 Score=33.95 Aligned_cols=39 Identities=21% Similarity=0.387 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccchhc
Q 043153 45 AIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSK 83 (89)
Q Consensus 45 ~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~~K 83 (89)
++|.+++++++.+|+++|+-+.+..-+.+-.+.|+..-|
T Consensus 3 ~igagl~~Gla~igagig~G~~~~~~i~~~arqPe~~~~ 41 (69)
T 2x2v_A 3 FLGAAIAAGLAAVAGAIAVAIIVKATIEGTTRQPELRGT 41 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHhh
Confidence 578899999999999999999999999999999996554
No 6
>2wgm_A ATP synthase subunit C, sodium ION specific; F1FO-ATP synthase rotor, sodium-motive force, cell inner membrane, CF(0), membrane, transport; HET: F09; 2.35A {Ilyobacter tartaricus} PDB: 1yce_A*
Probab=88.73 E-value=0.19 Score=32.69 Aligned_cols=38 Identities=18% Similarity=0.339 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccc
Q 043153 42 TFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRI 80 (89)
Q Consensus 42 ~fg~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri 80 (89)
.+.++|.++++ ++.+|+++|+-+.+..-+.+--+.|+.
T Consensus 12 ~~~~igaGla~-la~iGagig~G~v~~~ai~a~arqPe~ 49 (89)
T 2wgm_A 12 AASAVGAGTAM-IAGIGPGVGQGYAAGKAVESVARQPEA 49 (89)
T ss_dssp HHHHHHHHHHG-GGGHHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCchH
Confidence 36788999999 999999999999999999998999995
No 7
>1a91_A F1FO ATPase subunit C; membrane protein, hydrogen ION transport; NMR {Escherichia coli} SCOP: f.17.1.1 PDB: 1c0v_A 1c17_A 1c99_A 1qo1_K 1aty_A 1l6t_A 1ijp_A
Probab=87.92 E-value=0.66 Score=29.50 Aligned_cols=39 Identities=31% Similarity=0.534 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccchh
Q 043153 44 SAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITS 82 (89)
Q Consensus 44 g~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~~ 82 (89)
+.++.+++++++.+|+++|+-+.+..-+.+--+.|+..-
T Consensus 9 ~~~~a~l~~Gla~igagig~G~v~~~~i~~~arqPe~~~ 47 (79)
T 1a91_A 9 LYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIP 47 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHh
Confidence 457778888899999999999999999999999999543
No 8
>2xnd_J ATP synthase lipid-binding protein, mitochondrial; ATP phosphorylase (H+ transporting), ATP synthesis, F1FO ATP synthase, hydrolase, ION transport; HET: ANP; 3.50A {Bos taurus}
Probab=79.20 E-value=0.35 Score=30.25 Aligned_cols=40 Identities=30% Similarity=0.311 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccchhc
Q 043153 43 FSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSK 83 (89)
Q Consensus 43 fg~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~~K 83 (89)
+.++|.++++ ++.+|+++|+-+.+..-+.+--+.|+..-|
T Consensus 5 ~~~igaGLa~-l~~~gagig~G~~~~~~i~~~arqPe~~~~ 44 (72)
T 2xnd_J 5 AKFIGAGAAT-VGVAGSGAGIGTVFGSLIIGYARNPSLKQQ 44 (72)
T ss_dssp TTTTTTTGGG-GGGHHHHHHHHHHHHHHHHHSSSCSCCCCC
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCcHHHHh
Confidence 4567888888 889999999999999999999999985443
No 9
>4a01_A Proton pyrophosphatase; hydrolase, membrane protein, proton pumping; HET: DMU; 2.35A {Vigna radiata}
Probab=43.36 E-value=18 Score=31.66 Aligned_cols=54 Identities=26% Similarity=0.351 Sum_probs=35.8
Q ss_pred HHHHHhhhhccccccccchHHhhhhhcCchhHHHH----------------HHHHHHHHHHHHHHHHHHHh
Q 043153 12 KKKKLKKMSGSVMLGESSSWSRALVKISPYTFSAI----------------GIAVAIGVSVLGAAWGIYIT 66 (89)
Q Consensus 12 ~~~~~~~~~~~~~~g~~~~~~~~~~~~sP~~fg~l----------------GIa~ai~lS~~GAAyGi~kt 66 (89)
.-+|--++||+...-|-..-+ +++..+|...+++ |+.+|+..+|-|.||=++|=
T Consensus 626 DY~rcV~I~T~aAlkeMi~Pg-llav~~Pi~vG~~lG~~al~G~L~G~~vsGv~~Ai~maNaGGAWDNAKK 695 (766)
T 4a01_A 626 DYATCVKISTDASIKEMIPPG-ALVMLTPLVVGILFGVETLSGVLAGSLVSGVQIAISASNTGGAWDNAKK 695 (766)
T ss_dssp CHHHHHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHhHHH
Confidence 344555666666444444433 4555666655543 88999999999999998874
No 10
>4f4s_A ATP synthase subunit 9, mitochondrial; C10 ring, F1FO ATP synthase, oligomycin, membr protein-antibiotic complex; HET: FME EFO; 1.90A {Saccharomyces cerevisiae} PDB: 2wpd_J* 2xok_K* 3u2y_K* 3u32_K* 3ud0_K* 3zry_J* 3u2f_K*
Probab=27.80 E-value=25 Score=22.44 Aligned_cols=39 Identities=31% Similarity=0.513 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccchhc
Q 043153 44 SAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSK 83 (89)
Q Consensus 44 g~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~~K 83 (89)
-++|.+++. +...|++-|+-..-.+.+-+--|.|+..-+
T Consensus 8 k~IGaGlA~-ig~~G~giGiG~vfg~~i~~~aRnP~~~~~ 46 (76)
T 4f4s_A 8 KYIGAGIST-IGLLGAGIGIAIVFAALINGVSRNPSIKDT 46 (76)
T ss_dssp HHHHHHHTT-TTHHHHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHH-HHcchHHHhHHHHHHHHHHHHhcChhHHHh
Confidence 467777776 667899988888877777777889977644
No 11
>2yvc_D Neprilysin; protein-peptide complex, cell adhesion; 3.20A {Mus musculus}
Probab=24.43 E-value=15 Score=19.32 Aligned_cols=13 Identities=54% Similarity=0.544 Sum_probs=8.5
Q ss_pred ccccCchHHHHHH
Q 043153 4 ITEKNPKKKKKKL 16 (89)
Q Consensus 4 ~~~~~~~~~~~~~ 16 (89)
|||-|..|-|||+
T Consensus 9 itdinapkpkkk~ 21 (26)
T 2yvc_D 9 ITDINAPKPKKKQ 21 (26)
T ss_pred cccccCCCcchhh
Confidence 6777766666554
No 12
>1hgv_A PH75 inovirus major coat protein; virus coat protein, helical virus coat protein, ssDNA viruses, filamentous bacteriophage, thermophiles; 2.4A {Bacteriophage PH75} SCOP: h.1.4.1 PDB: 1hgz_A 1hh0_A
Probab=23.85 E-value=72 Score=18.62 Aligned_cols=12 Identities=67% Similarity=1.066 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 043153 49 AVAIGVSVLGAAWGI 63 (89)
Q Consensus 49 a~ai~lS~~GAAyGi 63 (89)
+++|+|| |||--
T Consensus 28 al~igls---aaw~y 39 (46)
T 1hgv_A 28 ALAIGLS---AAWKY 39 (46)
T ss_dssp HHHHHHH---HHHHH
T ss_pred HHHHhHH---HHHHH
Confidence 5566665 56643
No 13
>1ycp_F Fibrinopeptide A-alpha; fibrinopeptide-A, complex (serine protease-peptide), thrombi hydrolase-hydrolase substrate complex; 2.50A {Bos taurus}
Probab=20.15 E-value=27 Score=18.45 Aligned_cols=12 Identities=25% Similarity=0.745 Sum_probs=9.9
Q ss_pred hcccccCccchh
Q 043153 71 IGAAIKAPRITS 82 (89)
Q Consensus 71 ~g~gV~~Pri~~ 82 (89)
-|+||+-||++=
T Consensus 11 eGGgvRGPRvvE 22 (26)
T 1ycp_F 11 EGGGVRGPRVVE 22 (26)
T ss_pred cCCCccCCeeee
Confidence 478999999864
Done!