Query 043156
Match_columns 578
No_of_seqs 174 out of 2085
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 23:40:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043156.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043156hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aps_A DI-OR tripeptide H+ sym 100.0 4E-32 1.4E-36 292.9 28.3 461 21-559 8-478 (491)
2 2xut_A Proton/peptide symporte 100.0 1.4E-31 4.6E-36 291.3 17.8 485 22-563 8-513 (524)
3 1pw4_A Glycerol-3-phosphate tr 100.0 1.6E-28 5.4E-33 261.2 14.8 402 24-556 26-437 (451)
4 4gc0_A D-xylose-proton symport 99.9 1.2E-27 4E-32 257.9 13.5 403 61-565 54-475 (491)
5 3o7q_A L-fucose-proton symport 99.9 6.6E-26 2.3E-30 240.1 23.1 358 22-509 22-406 (438)
6 2gfp_A EMRD, multidrug resista 99.9 2.6E-24 8.9E-29 223.4 9.2 346 29-508 3-350 (375)
7 2cfq_A Lactose permease; trans 99.9 9.2E-24 3.2E-28 223.2 4.3 394 26-556 7-403 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.4 4.3E-13 1.5E-17 141.8 11.7 179 25-218 251-433 (451)
9 3o7q_A L-fucose-proton symport 99.4 2.2E-12 7.4E-17 135.9 12.5 168 26-213 258-427 (438)
10 2cfq_A Lactose permease; trans 99.3 4.4E-12 1.5E-16 133.4 8.9 176 27-219 221-400 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.1 5.1E-11 1.8E-15 127.6 7.2 185 28-221 285-474 (491)
12 4gc0_A D-xylose-proton symport 98.9 9.5E-10 3.3E-14 117.6 8.2 183 26-221 276-465 (491)
13 2gfp_A EMRD, multidrug resista 98.9 2.1E-10 7.1E-15 118.3 2.1 164 26-205 199-363 (375)
14 2xut_A Proton/peptide symporte 98.5 4.5E-07 1.5E-11 97.6 12.1 141 363-555 57-201 (524)
No 1
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=100.00 E-value=4e-32 Score=292.90 Aligned_cols=461 Identities=18% Similarity=0.200 Sum_probs=306.3
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhh-ccchhh
Q 043156 21 KHGGIKTSLLILAAFGFENLATIALGVNLVTYFNGV-----LHLDLAEAANQVTNYMGTSYILSIVVALLADA-FIGRFK 94 (578)
Q Consensus 21 ~~~~~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~-----lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~-~~Grr~ 94 (578)
.++++|..+.+.+..++..+++|++.++++.|++++ +|+|..+.+++.+.+.++..++.+++|+++|| + |||+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~ 86 (491)
T 4aps_A 8 FFGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARP 86 (491)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHH
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchH
Confidence 456788999999999999999999999999999998 99999999999999999999999999999999 8 9999
Q ss_pred hhhhhhhhhccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHH
Q 043156 95 AVLISGSVEFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLF 174 (578)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~ 174 (578)
++.++.++..++.++. ....+...++++|++.|++.+...|+..++++|++|+++ ++|+.++++++
T Consensus 87 ~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~----~~r~~~~~~~~ 152 (491)
T 4aps_A 87 AVFWGGVLIMLGHIVL----------ALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHD----RRRDAGFSIFV 152 (491)
T ss_dssp HHHHHHHHHHHHHHHH----------HSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCT----THHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----------HHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccc----ccceeeehHHH
Confidence 9999999988776554 445678889999999999999999999999999999876 24777888899
Q ss_pred HHHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHHHHHHHHhcCCCceecC---CCCcchHHHHHHHHHHHHHhcccCC
Q 043156 175 LAVCIGGAISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQV---VQGSSVLIEIIQVYVAAIRNRKLEL 251 (578)
Q Consensus 175 ~~~~lG~~~~p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (578)
.+.++|..++|.+++++.++.||++.|++.++..+++.+..++..++..+++ ++++....+..+....
T Consensus 153 ~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 223 (491)
T 4aps_A 153 FGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVK--------- 223 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHH---------
Confidence 9999999999999999999899999999988777666665554433322211 1110011111100000
Q ss_pred CCCchhhhhhchhhhhhhhcccCCCCCccchhhHhhhhccCccccccccCCCCCccccchhhhhHHHHHhHHHHHHHHHH
Q 043156 252 PEDPMELYEINMDKEAAIETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIV 331 (578)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~ 331 (578)
.... +.......-...........+................ .. ..|+... ....++++......++.....
T Consensus 224 ~g~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 294 (491)
T 4aps_A 224 VSLA--VAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFY----FA--WMISSVK-VTSTEHLRVVSYIPLFIAAVL 294 (491)
T ss_dssp CCCC--CHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHH----HH--HHC-------------CTTHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHH----HH--HHhhccc-ccHHHHHHHHHHHHHHHHHHH
Confidence 0000 0000000000000000000000000000000000000 00 0011000 112334444555566666677
Q ss_pred HHHhhhccchhhhhhhcc-CCCCCCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHH
Q 043156 332 MTLCLAQLQTFSIQQGLT-MDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVL 410 (578)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~ 410 (578)
++..+.+..+.+..+... .+.+ ....+.+...+.+..++..++.+++.||++||. ......+.+|.++
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~------~~~~~~~~~~~~~ 363 (491)
T 4aps_A 295 FWAIEEQGSVVLATFAAERVDSS-----WFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQ------PSSPTKFAVGLMF 363 (491)
T ss_dssp HHHHHGGGGTHHHHHHHHSCCCS-----SSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---------CHHHHHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHhccC-----ccCHHHHhccchHHHHHHHHHHHHHHHHHhccC------CCchHHHHHHHHH
Confidence 777777666543333221 1211 134567788888999999999999999888773 2445667788888
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHH
Q 043156 411 SCISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLW 490 (578)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~ 490 (578)
.+++++++....... ....+.+.+++++.+++.+++.+...|..++++.+.+|++.||+++|+.+
T Consensus 364 ~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~ 428 (491)
T 4aps_A 364 AGLSFLLMAIPGALY---------------GTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWF 428 (491)
T ss_dssp HHHHHTTTHHHHHHC---------------CCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHH
T ss_pred HHHHHHHHHHHHHhc---------------CCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 888887776654211 01123466778888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhccccCccCCCCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHhhhccccccc
Q 043156 491 CSMALGYFFSTILVNIVNSATRGITQSGGWLAGNNINRNHLNLFFWLLSALSFINFSVYLFMSSRYNYR 559 (578)
Q Consensus 491 ~~~~ig~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~~ 559 (578)
+...+|+.+++.+.+.+.+ .++...|+..+++++++.++.+++.++.+++
T Consensus 429 ~~~~~g~~i~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 429 LSSSVGSALNAQLVTLYNA-------------------KSEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp HHHHHHHHHHHHHGGGGGG-------------------SSTTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHhc-------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999877652 1234678888888888888888877766544
No 2
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.97 E-value=1.4e-31 Score=291.33 Aligned_cols=485 Identities=17% Similarity=0.258 Sum_probs=293.7
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhh
Q 043156 22 HGGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLH------LDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKA 95 (578)
Q Consensus 22 ~~~~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg------~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~ 95 (578)
++++|.++.+.+..++..+++|++.++++.|+++++| ++..+++++.+.+.++..++.+++|+++||++|||++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~ 87 (524)
T 2xut_A 8 PKWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNT 87 (524)
T ss_dssp -----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 4567788889999999999999999999999999999 9999999999999999999999999999994499999
Q ss_pred hhhhhhhhccCCcccccCCCCCccccccc-hhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhH---HH
Q 043156 96 VLISGSVEFLPPPCNVFDPTAGCKKIEGS-DAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSF---FN 171 (578)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~---~~ 171 (578)
+.++.++..++.++. .... +.+.+++.|++.|++.+...|+..++++|++|+++ |++. ++
T Consensus 88 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~ 151 (524)
T 2xut_A 88 ILWLSLIYCVGHAFL----------AIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN------KSLAQKAFD 151 (524)
T ss_dssp HHHHHHHHHHHHHHH----------HHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT------TTHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----------HHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc------hHHHHHHHH
Confidence 999998888665553 3344 77889999999999999999999999999999887 7554 45
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCC
Q 043156 172 LLFLAVCIGGAISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLEL 251 (578)
Q Consensus 172 ~~~~~~~lG~~~~p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (578)
+++.+.++|..++|.+++++.+..||++.|++.+++.+++.+..++..++.++++|++ ++..+..+.+....+++...
T Consensus 152 ~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~- 229 (524)
T 2xut_A 152 MFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEP-KDPHGFLPVIRSALLTKVEG- 229 (524)
T ss_dssp HHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC---------------------CTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCC-ccchhHHHHHHHHHhhhhcc-
Confidence 5999999999999999999998889999999988887766665555444443332322 22111111111111111100
Q ss_pred CCCchhhhhhchhhhhhhhcccCCCCCccchhhHhhh---hccCccccccccCCCCCc-------cccchhhhhHHHHHh
Q 043156 252 PEDPMELYEINMDKEAAIETEFLPHRDIFRFLDKAAI---QKTSTENLEITEAPNPWK-------LCRVTQVENAKIILG 321 (578)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~k~~~~ 321 (578)
++......+. .+.........+......+..... ...+ .....+|+ .+.....+++|+...
T Consensus 230 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (524)
T 2xut_A 230 KGNIGLVLAL---IGGVSAAYALVNIPTLGIVAGLCCAMVLVMG------FVGAGASLQLERARKSHPDAAVDGVRSVLR 300 (524)
T ss_dssp HHHHHHHHHH---HHHHHHHHTGGGTTTTCSSHHHHHHHHHHHH------HHHTGGGTHHHHSCCSCCSSSSTTTTTHHH
T ss_pred cCccchhhhh---hhhhhhhhhhcccchhhhhhhhhhhhhhhhc------ccccchhhHHhhhhccccHhHHHHHHHHHH
Confidence 0000000000 000000000000000000000000 0000 00001220 011112234455555
Q ss_pred HHHHHHHHHHHHHhhhccchhhhhhhccCCCCCCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCch
Q 043156 322 MIPIFCCTIVMTLCLAQLQTFSIQQGLTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHL 401 (578)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~ 401 (578)
...++.....++..+.+..+.+..+....+... + .+.+.+...+.+..++..++.+++..+..+|.++ +.+..
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 373 (524)
T 2xut_A 301 ILVLFALVTPFWSLFDQKASTWILQANDMVKPQ---W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGV---KLTAL 373 (524)
T ss_dssp HHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS---S-SCHHHHHTTSGGGHHHHGGGTTTC---------------CCH
T ss_pred HHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe---e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCC---CCChH
Confidence 555556666666666666665555443333221 0 1334556667778888888888876444444321 22445
Q ss_pred hhHhHhHHHHHHHHHHHHHHHHHHHhhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchh
Q 043156 402 QRVGVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGI 481 (578)
Q Consensus 402 ~~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~ 481 (578)
+++.+|+++.+++++++++..... +.....+.+++++.+++.+++++...+..++++.+.+|+++
T Consensus 374 ~~~~~g~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~ 438 (524)
T 2xut_A 374 RKMGAGIAITGLSWIVVGTIQLMM---------------DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAM 438 (524)
T ss_dssp HHHHTHHHHHHHHHHTTTTTTTTT---------------TTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---------------cCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence 667778888888877665532100 00113466778888999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhccccCccCCCCCcCCC-CCCcchhHHHHHHHHHHHHHHHHHHhhhcccccccc
Q 043156 482 KSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGWLAGN-NINRNHLNLFFWLLSALSFINFSVYLFMSSRYNYRP 560 (578)
Q Consensus 482 rg~~~g~~~~~~~ig~~lg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~ 560 (578)
||+++|++++..++|+.+++.+.+.+.+.+. .+|.. + ..+. ..+.|++.+++++++.++++++.+++++++
T Consensus 439 ~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~-----~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (524)
T 2xut_A 439 KGTIMSFWTLSVTVGNLWVLLANVSVKSPTV-----TEQIV-QTGMSV--TAFQMFFFAGFAILAAIVFALYARSYQMQD 510 (524)
T ss_dssp CTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH-----HHHHH-HHHSCH--HHHHHHHHHHHHHHHHHHHC----------
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhccccc-----ccccc-cccccc--cccHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 9999999999999999999999987763110 01211 0 0111 123488888888998888888877776554
Q ss_pred ccc
Q 043156 561 QTS 563 (578)
Q Consensus 561 ~~~ 563 (578)
.++
T Consensus 511 ~~~ 513 (524)
T 2xut_A 511 HYR 513 (524)
T ss_dssp ---
T ss_pred hhh
Confidence 443
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.95 E-value=1.6e-28 Score=261.20 Aligned_cols=402 Identities=11% Similarity=-0.036 Sum_probs=261.9
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhh
Q 043156 24 GIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVE 103 (578)
Q Consensus 24 ~~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~ 103 (578)
+++.++.+.+..+...+..+...+.++ ++.+++ .+..+.+++.+.+.++..++.+++|+++||+ |||++++++.++.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~ 102 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLVRKNFALAMP-YLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILA 102 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHH-HTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHH
Confidence 345566666666766666665556665 455677 9999999999999999999999999999998 9999999999998
Q ss_pred ccCCcccccCCCCCccccc----cchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHH
Q 043156 104 FLPPPCNVFDPTAGCKKIE----GSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCI 179 (578)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~l 179 (578)
+++.++. .. ..+.+.++++|++.|++.+...++..++++|++|+++ |++++++.+.+.++
T Consensus 103 ~~~~~~~----------~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~ 166 (451)
T 1pw4_A 103 AAVMLFM----------GFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNV 166 (451)
T ss_dssp HHHHHHH----------HHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHHHHHHHHH
T ss_pred HHHHHHH----------HhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------hhHHHHHHHHHHHH
Confidence 8776554 33 5677889999999999999999999999999999876 99999999999999
Q ss_pred HHHHHHHHHHHhccccC-chhHHHHHHHHHHHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCCCCCchhh
Q 043156 180 GGAISVTLIVWIQDNKG-WDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMEL 258 (578)
Q Consensus 180 G~~~~p~l~~~l~~~~g-~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (578)
|.+++|.+++++.+..| ||+.|++.+++.++..+..++..++.+.+.... ...+... .
T Consensus 167 g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~-~ 225 (451)
T 1pw4_A 167 GGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLP--------------------PIEEYKN-D 225 (451)
T ss_dssp HHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCC--------------------SCTTTCC-C
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCC--------------------Chhhhcc-c
Confidence 99999999999888888 999999988876665554444333221111000 0000000 0
Q ss_pred hhhchhhhhhhhcccCCCCCccchhhHhhhhccCccccccccCCCCCccccchhhhhHHHHHhHHH-HHHHHHHHHHhhh
Q 043156 259 YEINMDKEAAIETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIP-IFCCTIVMTLCLA 337 (578)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~-~~~~~~~~~~~~~ 337 (578)
.+. +..+.... ...++..........+.+..... .++....++....
T Consensus 226 ~~~-------------------~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (451)
T 1pw4_A 226 YPD-------------------DYNEKAEQ-------------ELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILD 273 (451)
T ss_dssp ---------------------------------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccc-------------------cchhhhhc-------------ccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 00000000 00000000000000111111111 1111111111111
Q ss_pred ccchhhhhhhccCCCCCCCceeeCCCcccCchhHHHHHHHHhhhhhhccc--cccccCCCCCCCchhhHhHhHHHHH-HH
Q 043156 338 QLQTFSIQQGLTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPF--AGKITGNPTGITHLQRVGVGLVLSC-IS 414 (578)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l--~~r~~~~~~~~~~~~~~~iG~~~~~-~~ 414 (578)
. .+.+..+..+.+ ....+.+.....+..++..++.+++.||+ .+| +.+.++.++.. ++
T Consensus 274 ~-~~~~~~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~-----------~~~~~~~~~~~~~~ 334 (451)
T 1pw4_A 274 W-SPTYLKEVKHFA-------LDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR-----------GATGVFFMTLVTIA 334 (451)
T ss_dssp H-HHHHBTTBSCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCH-----------HHHHHHHHHHHHHH
T ss_pred H-HHHHHHHhcCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----------hhHHHHHHHHHHHH
Confidence 1 122211111111 11123455566777888888899998887 555 33444444443 44
Q ss_pred HHHHHHHHHHHHhhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHH
Q 043156 415 MAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMA 494 (578)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ 494 (578)
++++.+. .+.+.+......++.+++.....+..+.+..+.+|++.||++.|+.+....
T Consensus 335 ~~~~~~~----------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 392 (451)
T 1pw4_A 335 TIVYWMN----------------------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGY 392 (451)
T ss_dssp HHHTTSC----------------------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHh----------------------cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHH
Confidence 4433221 112455566667778888888888888999999999999999999999999
Q ss_pred H-HHHHHHHHHHhhhccccCccCCCCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHhhhcccc
Q 043156 495 L-GYFFSTILVNIVNSATRGITQSGGWLAGNNINRNHLNLFFWLLSALSFINFSVYLFMSSRY 556 (578)
Q Consensus 495 i-g~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~ 556 (578)
+ |..+++.+.+.+.+. .+++..|+..+++++++.++.++..++.
T Consensus 393 ~~g~~~~~~~~g~l~~~------------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (451)
T 1pw4_A 393 LGGSVAASAIVGYTVDF------------------FGWDGGFMVMIGGSILAVILLIVVMIGE 437 (451)
T ss_dssp HHHHHHHHHHHHHHHHS------------------SCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh------------------cCcHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9 999999999987631 1356788888888888888777765443
No 4
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.95 E-value=1.2e-27 Score=257.86 Aligned_cols=403 Identities=10% Similarity=0.048 Sum_probs=236.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcccccCCC--------CCccccccchhHHHHHH
Q 043156 61 LAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPT--------AGCKKIEGSDAALLFVA 132 (578)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~ 132 (578)
..+.+++.+.+.++..++.+++|+++||+ |||++++++.+++.++.++..+++. .......+.+...++++
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~ 132 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIY 132 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHH
Confidence 45678899999999999999999999998 9999999999888866544321110 01111245788999999
Q ss_pred HHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccc--------cCchhHHHHH
Q 043156 133 LYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQDN--------KGWDRGFGLS 204 (578)
Q Consensus 133 ~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~l~~~--------~g~~~~f~i~ 204 (578)
|+++|+|.|+..+..+++++|..|++. |++..++.+.+..+|..+++.++..+... .+|++.+.+.
T Consensus 133 R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (491)
T 4gc0_A 133 RIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASE 206 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhh
Confidence 999999999999999999999999987 99999999999999999998887766432 2466666655
Q ss_pred HHHHHHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCCCCCchhhhhhchhhhhhhhcccCCCCCc--cch
Q 043156 205 SVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEINMDKEAAIETEFLPHRDI--FRF 282 (578)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 282 (578)
.+..++..+..++ .||+|+++..+++.++.....++....+. .+.
T Consensus 207 ~~~~~~~~~~~~~---------------------------------~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~ 253 (491)
T 4gc0_A 207 CIPALLFLMLLYT---------------------------------VPESPRWLMSRGKQEQAEGILRKIMGNTLATQAV 253 (491)
T ss_dssp HHHHHHHHHHGGG---------------------------------SCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhc---------------------------------CCCChHHHHHcCchhHHHHhHHHhcCCchhHHHH
Confidence 5544443332221 12233333222222221111111000000 000
Q ss_pred hhHhhhhccCccccccccCCCCCccccchhhhhHHHHHhHHHHH-HHHHHHHHhhhccchhhhhhhccCCCCCCCceeeC
Q 043156 283 LDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIF-CCTIVMTLCLAQLQTFSIQQGLTMDTSVTTSFHIP 361 (578)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (578)
.+........+ . ... ......+++........ ............+.+.+.... ..+ ...
T Consensus 254 ~~~~~~~~~~~------~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------~~~ 313 (491)
T 4gc0_A 254 QEIKHSLDHGR------K--TGG----RLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTL-GAS-------TDI 313 (491)
T ss_dssp HHHHHHHHHHH------H--HTT----HHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-SCC-------HHH
T ss_pred HHHHHHHHhhh------h--hhh----HHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhc-CCC-------ccc
Confidence 00000000000 0 000 00000011111111110 000000000011111111111 000 001
Q ss_pred CCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHhhhhhcCccCCCCCC
Q 043156 362 PASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVV 441 (578)
Q Consensus 362 ~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (578)
.........+..++...+...+.||++|| +.+..+...++++++.++.....
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~l~dr~Grr-----------~~~~~~~~~~~~~~~~l~~~~~~----------------- 365 (491)
T 4gc0_A 314 ALLQTIIVGVINLTFTVLAIMTVDKFGRK-----------PLQIIGALGMAIGMFSLGTAFYT----------------- 365 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSH-----------HHHHHHHHHHHHHHHHHHHHHHT-----------------
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcCc-----------chhccchHHHHHHHHHHHHHHhc-----------------
Confidence 11223334566677777888888888888 45667777777777666554311
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccCccCCCCCc
Q 043156 442 QPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGWL 521 (578)
Q Consensus 442 ~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~~~~~~~~~~~~~~~~ 521 (578)
.......++..++..........|..+.+..|.+|++.|++++|+.+..+++++.+++.+.+.+.... |.
T Consensus 366 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~--------~~ 435 (491)
T 4gc0_A 366 --QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNS--------WL 435 (491)
T ss_dssp --TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHH--------HH
T ss_pred --ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HH
Confidence 11122222222222223333456778889999999999999999999999999999998888764211 00
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHHhhhccccccccccccC
Q 043156 522 AGNNINRNHLNLFFWLLSALSFINFSVYLFMSSRYNYRPQTSVG 565 (578)
Q Consensus 522 ~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~ 565 (578)
. ...+....|++.+++++++.++.+++.+++|+++.|+.+
T Consensus 436 ~----~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~ 475 (491)
T 4gc0_A 436 V----AHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELE 475 (491)
T ss_dssp H----HHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHG
T ss_pred H----hhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHH
Confidence 0 001223568899999999999999999999999988755
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.94 E-value=6.6e-26 Score=240.13 Aligned_cols=358 Identities=14% Similarity=0.092 Sum_probs=240.3
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhh
Q 043156 22 HGGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGS 101 (578)
Q Consensus 22 ~~~~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~ 101 (578)
+++++.+..+....+...+......+.++ ++++++|+|..+.+++.+.+.++..++.++.|+++||+ |||++++++.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~ 99 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDILLP-QFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLF 99 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHH
Confidence 44566666666677777777665555554 57889999999999999999999999999999999998 99999999999
Q ss_pred hhccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHH
Q 043156 102 VEFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGG 181 (578)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~ 181 (578)
+.+++.++. .......+++.++++|++.|++.+...+...++++|++|+++ |++.+++.+.+.++|.
T Consensus 100 ~~~~~~~~~-------~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~ 166 (438)
T 3o7q_A 100 LYALGAALF-------WPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRLNLAQTFNSFGA 166 (438)
T ss_dssp HHHHHHHHH-------HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-------HhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------HHHHHHHHHHHHHHHH
Confidence 988665542 001235688899999999999999999999999999999987 9999999999999999
Q ss_pred HHHHHHHHHhc-cccC-------------------------chhHHHHHHHHHHHHHHHHHhcCCCceecCCCCcchHHH
Q 043156 182 AISVTLIVWIQ-DNKG-------------------------WDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIE 235 (578)
Q Consensus 182 ~~~p~l~~~l~-~~~g-------------------------~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (578)
.++|.+++++. +..+ ||+.|++.++..++..+..+.... ++.++++
T Consensus 167 ~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~--p~~~~~~------ 238 (438)
T 3o7q_A 167 IIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKF--PALQSDN------ 238 (438)
T ss_dssp HHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCTTTC------
T ss_pred HHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcC--Ccccccc------
Confidence 99999999987 5544 999998877665555444333211 1111000
Q ss_pred HHHHHHHHHHhcccCCCCCchhhhhhchhhhhhhhcccCCCCCccchhhHhhhhccCccccccccCCCCCccccchhhhh
Q 043156 236 IIQVYVAAIRNRKLELPEDPMELYEINMDKEAAIETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVEN 315 (578)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (578)
++++ +..+. .. +++ +..+
T Consensus 239 ----------------~~~~----------------------~~~~~--~~-----------------~~~----~~~~- 256 (438)
T 3o7q_A 239 ----------------HSDA----------------------KQGSF--SA-----------------SLS----RLAR- 256 (438)
T ss_dssp ----------------CCCS----------------------STTSH--HH-----------------HHH----HHTT-
T ss_pred ----------------cccc----------------------cccch--hh-----------------hHH----HHHh-
Confidence 0000 00000 00 000 0000
Q ss_pred HHHHHhH-HHHHHHHHHHHHhhhccchhhhhhhccCCCCCCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCC
Q 043156 316 AKIILGM-IPIFCCTIVMTLCLAQLQTFSIQQGLTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGN 394 (578)
Q Consensus 316 ~k~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~ 394 (578)
.+++... +..++............+.++..+..+.+. ...+.+.....+..++..++.+++.||+.+|
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-------~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~---- 325 (438)
T 3o7q_A 257 IRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTA-------GFAANYLTGTMVCFFIGRFTGTWLISRFAPH---- 325 (438)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH----
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcch-------hHHHHHHHHHHHHHHHHHHHHHHHHHHhcch----
Confidence 1111111 111111111222222222221222212121 1123445556677788888899999888776
Q ss_pred CCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHhhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheee
Q 043156 395 PTGITHLQRVGVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFY 474 (578)
Q Consensus 395 ~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~ 474 (578)
+.+.++.++..+++++..+.. +. +....+++.+++.+...|..+++..
T Consensus 326 -------~~~~~~~~~~~~~~~~~~~~~------------------------~~-~~~~~~~~~g~~~~~~~~~~~~~~~ 373 (438)
T 3o7q_A 326 -------KVLAAYALIAMALCLISAFAG------------------------GH-VGLIALTLCSAFMSIQYPTIFSLGI 373 (438)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHCC------------------------HH-HHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHHHHcC------------------------Cc-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777766665554421 22 2334457778888888899999989
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 043156 475 SEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVNS 509 (578)
Q Consensus 475 ~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~~~~ 509 (578)
+..|++ ++.+.++.. ...+|+.+++.+.+.+.+
T Consensus 374 ~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~ 406 (438)
T 3o7q_A 374 KNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSD 406 (438)
T ss_dssp SSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHH
T ss_pred hhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHH
Confidence 999977 999999887 677999999999998874
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.90 E-value=2.6e-24 Score=223.41 Aligned_cols=346 Identities=12% Similarity=0.053 Sum_probs=229.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCc
Q 043156 29 LLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPP 108 (578)
Q Consensus 29 ~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~ 108 (578)
+.++...++..+......+.++. +.+++|.|..+.+++.+.+.++..++.++.|+++||+ ||||++.++.++..++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIAD-MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHH
Confidence 44566667777776666666665 5678999999999999999999999999999999998 999999999988886655
Q ss_pred ccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 043156 109 CNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLI 188 (578)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~ 188 (578)
+. ...++...+++.|++.|++.+...+...+++.|.+|+++ |++.+++.+...++|..++|.++
T Consensus 81 ~~----------~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~ 144 (375)
T 2gfp_A 81 VA----------VTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLNMGILVSPLLAPLIG 144 (375)
T ss_dssp HH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HH----------HHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHhhHHHH
Confidence 53 345688899999999999999999999999999999887 99999999999999999999999
Q ss_pred HHhccccCchhHHHHHHHHHHHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCCCCCchhhhhhchhhhhh
Q 043156 189 VWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEINMDKEAA 268 (578)
Q Consensus 189 ~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (578)
+++.++++||+.|++.++..++..+...+..++ +++.+ + ++ +
T Consensus 145 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~---------------------~~-----~-------- 186 (375)
T 2gfp_A 145 GLLDTMWNWRACYLFLLVLCAGVTFSMARWMPE---TRPVD-A---------------------PR-----T-------- 186 (375)
T ss_dssp HHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCC---CSTTT-C---------------------CC-----C--------
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcc---cCCCC-c---------------------cc-----c--------
Confidence 999988899999998777655544322222111 11100 0 00 0
Q ss_pred hhcccCCCCCccchhhHhhhhccCccccccccCCCCCccccchhhhhHHHHHhHHH-HHHHHHHHHHhhhccchhhhhhh
Q 043156 269 IETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIP-IFCCTIVMTLCLAQLQTFSIQQG 347 (578)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 347 (578)
+ ...+++ +..++ |+...... .++............+.+. ++.
T Consensus 187 ---------~----------------------~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 229 (375)
T 2gfp_A 187 ---------R----------------------LLTSYK----TLFGN-SGFNCYLLMLIGGLAGIAAFEACSGVLM-GAV 229 (375)
T ss_dssp ---------C----------------------TTTCST----HHHHH-HHHHHHHHHHHHHHHHHHHHHHHCSCSS-HHH
T ss_pred ---------c----------------------HHHHHH----HHhcC-cchHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 0 000110 11111 22222111 1122222222222222222 211
Q ss_pred ccCCCCCCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHH-HHHHHHHHHHHHHHHH
Q 043156 348 LTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVL-SCISMAIAAIFEVIRK 426 (578)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~-~~~~~~~~~~~~~~~~ 426 (578)
.+.+. ...+.+.....+..++..++.+++.||..+ ++..+..+ ...+.........
T Consensus 230 ~g~~~-------~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~-------------~~~~~~~~~~~~~~~~~~~~~~--- 286 (375)
T 2gfp_A 230 LGLSS-------MTVSILFILPIPAAFFGAWFAGRPNKRFST-------------LMWQSVICCLLAGLLMWIPDWF--- 286 (375)
T ss_dssp HHHHH-------HHHHHHHHTHHHHHHHHHHHHHTTTTHHHH-------------HHHHHHHHHHHTSSSSSHHHHH---
T ss_pred hCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHhhh---
Confidence 11111 112344455566677777777776544332 23333333 2222221111110
Q ss_pred hhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 043156 427 DVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNI 506 (578)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~ 506 (578)
.+.+.+.++...++.+++.+...+...++..+..| +.||++.|+.+....+|..+++.+.+.
T Consensus 287 -----------------~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~ 348 (375)
T 2gfp_A 287 -----------------GVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAM 348 (375)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTH
T ss_pred -----------------ccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 01144556667788899999999999999999999 899999999999999999999888776
Q ss_pred hh
Q 043156 507 VN 508 (578)
Q Consensus 507 ~~ 508 (578)
+.
T Consensus 349 l~ 350 (375)
T 2gfp_A 349 LP 350 (375)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.88 E-value=9.2e-24 Score=223.17 Aligned_cols=394 Identities=11% Similarity=-0.002 Sum_probs=230.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhcc
Q 043156 26 KTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFL 105 (578)
Q Consensus 26 r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~ 105 (578)
|..+.+....++....+....++++.|+++++|+|..++|++.+.+.++..++.+++|+++||+ ||||+++++.+++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~ 85 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence 4556666666666667777788999999999999999999999999999999999999999998 999999998887764
Q ss_pred CCcccccCCCCCccccccchh-HHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHH
Q 043156 106 PPPCNVFDPTAGCKKIEGSDA-ALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAIS 184 (578)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~ 184 (578)
..... ......... ..++.++.+.+++.+...+...+.+.++.++.. ++|+..++..+...++|..++
T Consensus 86 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~~~~~~~g~~~~~~~~g~~~~ 154 (417)
T 2cfq_A 86 MFAPF-------FIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS----RRSNFEFGRARMFGCVGWALG 154 (417)
T ss_dssp CHHHH-------HHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH----HHHTCCHHHHSSSTTTHHHHH
T ss_pred HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh----hhcccchHHHHHHHHHHHHHH
Confidence 32110 000000000 012234444444444444444444444433211 236777788778889999999
Q ss_pred HHHHHHhccccCchhHHHHHHHHHHHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCCCCCchhhhhhchh
Q 043156 185 VTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEINMD 264 (578)
Q Consensus 185 p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (578)
|.+++++.+ .+|++.|++.++..++..+..+. .+ ++++.. . +..+.. +
T Consensus 155 ~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~-~~---~~~~~~-~------------------~~~~~~----~---- 202 (417)
T 2cfq_A 155 ASIVGIMFT-INNQFVFWLGSGCALILAVLLFF-AK---TDAPSS-A------------------TVANAV----G---- 202 (417)
T ss_dssp HHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCS-SC---CCCSCS-S------------------CSSSSS----S----
T ss_pred HHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHH-cC---cccccc-c------------------cccccc----c----
Confidence 999999886 58999998766553333222211 11 111100 0 000000 0
Q ss_pred hhhhhhcccCCCCCccchhhHhhhhccCccccccccCCCCCccccchhhhhHHHHHhHHHHHHHHHHHHHhhhccchhhh
Q 043156 265 KEAAIETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQLQTFSI 344 (578)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (578)
...+..+..+.. +..+++ +........+.....+..+.+..+.+.
T Consensus 203 ----------~~~~~~~~~~~~------------------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (417)
T 2cfq_A 203 ----------ANHSAFSLKLAL------------------------ELFRQP-KLWFLSLYVIGVSCTYDVFDQQFANFF 247 (417)
T ss_dssp ----------SCCCCCCHHHHH------------------------HHTTCH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------cccccccHHHHH------------------------HHhcCC-chhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000000000 000111 111111111111112222222222221
Q ss_pred hhhccCCCC-CCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHHHHH
Q 043156 345 QQGLTMDTS-VTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEV 423 (578)
Q Consensus 345 ~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~ 423 (578)
... .+.. .+ ....+.+..++.+..++..++.+++.||+++| +.+.++.++.+++++..++.
T Consensus 248 ~~~--~~~~~~~---~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~-----------~~l~~~~~~~~~~~~~~~~~-- 309 (417)
T 2cfq_A 248 TSF--FATGEQG---TRVFGYVTTMGELLNASIMFFAPLIINRIGGK-----------NALLLAGTIMSVRIIGSSFA-- 309 (417)
T ss_dssp HHT--SSSHHHH---THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-----------HHHHHHHHHHHHHHHHHTTC--
T ss_pred HHH--HhccCCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH-----------HHHHHHHHHHHHHHHHHHHh--
Confidence 111 1100 00 00012334455566677788889999888877 35556666666665444331
Q ss_pred HHHhhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHH-HHHHHHHHHHHHHH
Q 043156 424 IRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCF-LWCSMALGYFFSTI 502 (578)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~-~~~~~~ig~~lg~~ 502 (578)
.+.+.++....+.+++.....+..+.++.|..|++.||++.++ ++..+++|+.++|.
T Consensus 310 ----------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~ 367 (417)
T 2cfq_A 310 ----------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSV 367 (417)
T ss_dssp ----------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTH
T ss_pred ----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhh
Confidence 1334444455566666666677778899999999999999998 58888999999999
Q ss_pred HHHhhhccccCccCCCCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHhhhcccc
Q 043156 503 LVNIVNSATRGITQSGGWLAGNNINRNHLNLFFWLLSALSFINFSVYLFMSSRY 556 (578)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~ 556 (578)
+.+.+.+ ..++...|...+++++++.++.++..++.
T Consensus 368 l~G~l~~------------------~~g~~~~f~~~~~~~l~~~~~~~~~~~~~ 403 (417)
T 2cfq_A 368 LAGNMYE------------------SIGFQGAYLVLGLVALGFTLISVFTLSGP 403 (417)
T ss_dssp HHHTHHH------------------HSHHHHHHHHHHHHHHHHHHHHTTSSCCS
T ss_pred hHHHHHH------------------hcCcHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 9987652 12356778888888888888777665543
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.42 E-value=4.3e-13 Score=141.82 Aligned_cols=179 Identities=16% Similarity=0.097 Sum_probs=148.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhcc--chhhhhhhhhhh
Q 043156 25 IKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFI--GRFKAVLISGSV 102 (578)
Q Consensus 25 ~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~--Grr~~~~~~~~~ 102 (578)
.|.++.+++..++....++++..+++.|+++.+|++..+++++.+...++..++.++.|+++|| + |||+.+.++.++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~ 329 (451)
T 1pw4_A 251 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMT 329 (451)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHH
Confidence 3567778888888889999999999999998899999999999999999999999999999999 5 888888877665
Q ss_pred hc-cCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHH-H
Q 043156 103 EF-LPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCI-G 180 (578)
Q Consensus 103 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~l-G 180 (578)
.. ++.++. ......+...+.+..++.|++.+...+....++.|.+|+++ |++++++++...++ |
T Consensus 330 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~g 395 (451)
T 1pw4_A 330 LVTIATIVY--------WMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGFTGLFGYLGG 395 (451)
T ss_dssp HHHHHHHHT--------TSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--------HHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------hhhHHHHHHHHHHHHH
Confidence 55 333332 01112355666777778888888888888899999999886 99999999999999 9
Q ss_pred HHHHHHHHHHhccccCchhHHHHHHHHHHHHHHHHHhc
Q 043156 181 GAISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAG 218 (578)
Q Consensus 181 ~~~~p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~ 218 (578)
..++|.+.|++.+..||+..|++.+++.+++.+..++.
T Consensus 396 ~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 396 SVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888777766655543
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.36 E-value=2.2e-12 Score=135.94 Aligned_cols=168 Identities=15% Similarity=0.076 Sum_probs=134.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhc
Q 043156 26 KTSLLILAAFGFENLATIALGVNLVTY-FNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEF 104 (578)
Q Consensus 26 r~~~~l~~~~~~~~~~~~~~~~~l~~y-l~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~ 104 (578)
|.++..++..++....++.+..+++.| +++.+|.+..+++.+.+.+.++..++.+++|+++||+ |||+++.++.++..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~ 336 (438)
T 3o7q_A 258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAM 336 (438)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence 456667777777788888888999999 8888899999999999999999999999999999998 99999998887777
Q ss_pred cCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHH
Q 043156 105 LPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAIS 184 (578)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~ 184 (578)
++.++. ....+... .+..++.+++.+...|...++..|.+|++ |+.+.++.. ...+|..++
T Consensus 337 ~~~~~~----------~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~-~~~~g~~~~ 397 (438)
T 3o7q_A 337 ALCLIS----------AFAGGHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGSSFIV-MTIIGGGIV 397 (438)
T ss_dssp HHHHHH----------HHCCHHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHHHHHHHH-HTTHHHHHH
T ss_pred HHHHHH----------HHcCCcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccchhhHHH-HHHHHHHHH
Confidence 554332 22233333 33447788888988999999989999854 667777655 567999999
Q ss_pred HHHHHHhccccC-chhHHHHHHHHHHHHHH
Q 043156 185 VTLIVWIQDNKG-WDRGFGLSSVAVFLATI 213 (578)
Q Consensus 185 p~l~~~l~~~~g-~~~~f~i~~~~~~~~~~ 213 (578)
|.+.|++.+..| ++..|.+.+++.++..+
T Consensus 398 ~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 398 TPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 999999999888 99999887665544433
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.28 E-value=4.4e-12 Score=133.38 Aligned_cols=176 Identities=10% Similarity=0.027 Sum_probs=126.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhh
Q 043156 27 TSLLILAAFGFENLATIALGVNLVTYFNGVLHLD---LAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVE 103 (578)
Q Consensus 27 ~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s---~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~ 103 (578)
..+...+..+.....++....+++.|+.+.++.. ....+...+...++..++.+++|+++||+ |||+++.++.++.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~ 299 (417)
T 2cfq_A 221 KLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIM 299 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHH
Confidence 3444444444444455555566888887766532 34457777777788888999999999998 9999998887776
Q ss_pred ccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHH-HHHHHHHHHH
Q 043156 104 FLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNL-LFLAVCIGGA 182 (578)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~-~~~~~~lG~~ 182 (578)
+++.++. ....+...+++...+.+++.+...+....++.|.+|++. |++++++ ++...++|+.
T Consensus 300 ~~~~~~~----------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~lg~~ 363 (417)
T 2cfq_A 300 SVRIIGS----------SFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMI 363 (417)
T ss_dssp HHHHHHH----------TTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------HHHHHHHHHTTTHHHHHH
T ss_pred HHHHHHH----------HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHhHHHH
Confidence 6543332 222344555566666666666666666789999999875 9999998 5778889999
Q ss_pred HHHHHHHHhccccCchhHHHHHHHHHHHHHHHHHhcC
Q 043156 183 ISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGL 219 (578)
Q Consensus 183 ~~p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~ 219 (578)
++|.++|++.++.|++..|.+.+++.+++.+..+...
T Consensus 364 ~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~ 400 (417)
T 2cfq_A 364 FMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTL 400 (417)
T ss_dssp HHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999998888899999888877777666554433
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.12 E-value=5.1e-11 Score=127.59 Aligned_cols=185 Identities=11% Similarity=-0.026 Sum_probs=134.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhh-----hhhhh
Q 043156 28 SLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVL-----ISGSV 102 (578)
Q Consensus 28 ~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~-----~~~~~ 102 (578)
.+.+....++....+.....+++.|.++.++.+..+.+.+.+...++..++.++.|+++||+ |||+... ++.++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~~ 363 (491)
T 4aps_A 285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLMF 363 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHHH
Confidence 44455555555666666677888999988888877888888899999999999999999998 9987655 56555
Q ss_pred hccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHH
Q 043156 103 EFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGA 182 (578)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~ 182 (578)
..++.++..+.... .......+...+++..++.+++.+...|...+++.|.+|++. |++++++++...++|..
T Consensus 364 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~ 436 (491)
T 4aps_A 364 AGLSFLLMAIPGAL-YGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF------NSQMMSMWFLSSSVGSA 436 (491)
T ss_dssp HHHHHTTTHHHHHH-CCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC------SSSSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-cCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHH
Confidence 55443332000000 000112355667777888899999989999999999999987 99999999999999999
Q ss_pred HHHHHHHHhccccCchhHHHHHHHHHHHHHHHHHhcCCC
Q 043156 183 ISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPL 221 (578)
Q Consensus 183 ~~p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~ 221 (578)
++|.+.+++.+ .++...|.+.+++.+++.+..+...++
T Consensus 437 i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 437 LNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp HHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998876 467778888777766666665555443
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.94 E-value=9.5e-10 Score=117.58 Aligned_cols=183 Identities=8% Similarity=-0.023 Sum_probs=120.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhcc
Q 043156 26 KTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFL 105 (578)
Q Consensus 26 r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~ 105 (578)
+..........+..+..+....+...++.+..+.+............+...++.++++++.||+ |||+.++.+.....+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~ 354 (491)
T 4gc0_A 276 GVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAI 354 (491)
T ss_dssp THHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHH
Confidence 3344444444444444333344444566778888888888888888899999999999999998 999999888777664
Q ss_pred CCcccccCCCCCccccccchhHHHHHHHHHHHHh-ccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHH
Q 043156 106 PPPCNVFDPTAGCKKIEGSDAALLFVALYLIATG-TAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAIS 184 (578)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g-~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~ 184 (578)
+.+... . ........... ++...+...+ .....|....+.+|.+|++. |++++++.+...++|+.++
T Consensus 355 ~~~~l~----~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~------R~~~~g~~~~~~~~~~~i~ 422 (491)
T 4gc0_A 355 GMFSLG----T-AFYTQAPGIVA-LLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI------RGKALAIAVAAQWLANYFV 422 (491)
T ss_dssp HHHHHH----H-HHHTTCCHHHH-HHHHHHHHHHHHTTTTHHHHHHHHHSSCTTT------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH----H-HHhcccchHHH-HHHHHHHHHHHHhHHHHHHHHHHHHhCCHhH------HHHHHHHHHHHHHHHHHHH
Confidence 432210 0 00011122222 2222222222 22234566789999999997 9999999999999999999
Q ss_pred HHHHHHhcc------ccCchhHHHHHHHHHHHHHHHHHhcCCC
Q 043156 185 VTLIVWIQD------NKGWDRGFGLSSVAVFLATIIFAAGLPL 221 (578)
Q Consensus 185 p~l~~~l~~------~~g~~~~f~i~~~~~~~~~~~~~~~~~~ 221 (578)
+.+.+.+.+ ..++...|++.+++.+++.++.+++.|+
T Consensus 423 ~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PE 465 (491)
T 4gc0_A 423 SWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPE 465 (491)
T ss_dssp HTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecC
Confidence 888776643 2456667888877777777666655543
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.92 E-value=2.1e-10 Score=118.29 Aligned_cols=164 Identities=10% Similarity=-0.069 Sum_probs=127.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhh-hc
Q 043156 26 KTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSV-EF 104 (578)
Q Consensus 26 r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~-~~ 104 (578)
|..+...+..++....++....+.+.|+++++|.+..+.+.+.+...++..++.++.|+++||+ ||+. ..+... ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~~--~~~~~~~~~ 275 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STLM--WQSVICCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHHH--HHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HHHHHHHHH
Confidence 4567777777888888888889999999988999999999999999999999999999999998 8733 233322 22
Q ss_pred cCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHH
Q 043156 105 LPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAIS 184 (578)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~ 184 (578)
.+..+.. .......+.+.+++..++.+++.+...+...+++.|.+| ++ |+++.++.+...++|..++
T Consensus 276 ~~~~~~~------~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~g~~~g~~~~~~~~g~~~~ 342 (375)
T 2gfp_A 276 AGLLMWI------PDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------AGTAGALVGGLQNIGSGVL 342 (375)
T ss_dssp TSSSSSH------HHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------HHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHH------HhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------cchHHHHHHHHHHHHHHHH
Confidence 2222110 000011355666677888899999999999999999998 44 9999999999999999999
Q ss_pred HHHHHHhccccCchhHHHHHH
Q 043156 185 VTLIVWIQDNKGWDRGFGLSS 205 (578)
Q Consensus 185 p~l~~~l~~~~g~~~~f~i~~ 205 (578)
|.+.+.+.+..+|+..+.+.+
T Consensus 343 ~~~~g~l~~~~~~~~~~~~~~ 363 (375)
T 2gfp_A 343 ASLSAMLPQTGQGSLGLLMTL 363 (375)
T ss_dssp STTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcccHHHHHHH
Confidence 999999987777887776643
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.50 E-value=4.5e-07 Score=97.62 Aligned_cols=141 Identities=14% Similarity=0.136 Sum_probs=108.8
Q ss_pred CcccCchhHHHHHHHHhhhhhhccc-cccccCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHhhhhhcCccCCCCCC
Q 043156 363 ASLPILPILFMILAVPVYDRIFVPF-AGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVV 441 (578)
Q Consensus 363 ~~~~~~~~i~~il~~~l~~~l~~~l-~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (578)
+.+.+...+...+..++.+++.||+ ++| +.+.++.++.+++.+++.+.
T Consensus 57 g~~~~~~~~~~~~~~~~~G~l~dr~~g~r-----------~~~~~~~~~~~~~~~~~~~~-------------------- 105 (524)
T 2xut_A 57 KDVFHSFVIGVYFFPLLGGWIADRFFGKY-----------NTILWLSLIYCVGHAFLAIF-------------------- 105 (524)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHTTSSCSH-----------HHHHHHHHHHHHHHHHHHHT--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcch-----------HHHHHHHHHHHHHHHHHHHh--------------------
Confidence 3455666778888899999999998 877 45677888887777766552
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHH---HHHHHHHHHHHHHHHHHhhhccccCccCCC
Q 043156 442 QPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCF---LWCSMALGYFFSTILVNIVNSATRGITQSG 518 (578)
Q Consensus 442 ~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~---~~~~~~ig~~lg~~~~~~~~~~~~~~~~~~ 518 (578)
+.+.+.+....++.|++.+...|...+++.+.+|++.|++..+. .+...++|..+++.+.+.+.+
T Consensus 106 ---~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~--------- 173 (524)
T 2xut_A 106 ---EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLK--------- 173 (524)
T ss_dssp ---SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHH---------
T ss_pred ---cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------
Confidence 11556677778899999999999999999999999999877776 888899999999988776652
Q ss_pred CCcCCCCCCcchhHHHHHHHHHHHHHHHHHHhhhccc
Q 043156 519 GWLAGNNINRNHLNLFFWLLSALSFINFSVYLFMSSR 555 (578)
Q Consensus 519 ~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~ 555 (578)
..+|+..|++.+++.++++++.++..++
T Consensus 174 ---------~~g~~~~f~~~~~~~~~~~~~~~~~~~~ 201 (524)
T 2xut_A 174 ---------NFGAAVAFGIPGVLMFVATVFFWLGRKR 201 (524)
T ss_dssp ---------TSCHHHHHHHHHHHHHHHHHHHHSSSSS
T ss_pred ---------cccHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 1246678888888877777766554443
Done!