BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043158
         (1962 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
           Peptide-Ligand (Hsp90 Peptide)
 pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
           Peptide-Ligand (Hsp90 Peptide)
 pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
           Peptide-Ligand (Hsp90 Peptide)
 pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
           Peptide-Ligand (Hsp90 Peptide)
 pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
           Peptide-Ligand (Hsp90 Peptide)
          Length = 125

 Score = 36.6 bits (83), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%)

Query: 87  ALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQ 146
           A KNL   + +QG   Y+ A+  Y +A+E+D  ++  W  LG      G    +   +++
Sbjct: 11  AWKNLGNAYYKQGD--YQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQK 68

Query: 147 GLLCSPNN 154
            L   PNN
Sbjct: 69  ALELDPNN 76



 Score = 32.3 bits (72), Expect = 3.0,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 2/75 (2%)

Query: 87  ALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQ 146
           A  NL   + +QG   Y+ A+  Y +A+E+D  ++  W + G      G    +   +++
Sbjct: 45  AWYNLGNAYYKQGD--YQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQK 102

Query: 147 GLLCSPNNWNCMEKL 161
            L   PNN    + L
Sbjct: 103 ALELDPNNAKAKQNL 117


>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
           Reveals Structural Similarities To Importin Alpha.
 pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
           Reveals Structural Similarities To Importin Alpha
          Length = 388

 Score = 35.8 bits (81), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 10/89 (11%)

Query: 104 ESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLE 163
           E A  CYL+A+E     +V W+ LG +  + G + ++   FE+ +   PN        L+
Sbjct: 152 EEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-------FLD 204

Query: 164 VLIAIGDEVACLSVAELILRHWPSHSRAL 192
             I +G+    L  A +  R   ++ RAL
Sbjct: 205 AYINLGN---VLKEARIFDRAVAAYLRAL 230


>pdb|2CR6|A Chain A, Solution Structure Of The Ig Domain (2998-3100) Of Human
           Obscurin
          Length = 115

 Score = 33.9 bits (76), Expect = 0.97,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 61  KDPLIANA-QAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALR 108
           K PL AN     D +    H+L LR LALK+  T++ + G     +ALR
Sbjct: 51  KTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEAGDQRASAALR 99


>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
           Tpr Motif
 pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
           Tpr Motif
          Length = 91

 Score = 33.5 bits (75), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 2/75 (2%)

Query: 87  ALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQ 146
           A  NL   + +QG   Y+ A+  Y +A+E+D  ++  W  LG      G    +   +++
Sbjct: 11  AWYNLGNAYYKQGD--YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68

Query: 147 GLLCSPNNWNCMEKL 161
            L   PNN    + L
Sbjct: 69  ALELDPNNAEAKQNL 83


>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
           Tpr Motif
 pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
           Tpr Motif
          Length = 125

 Score = 33.5 bits (75), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 2/75 (2%)

Query: 87  ALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQ 146
           A  NL   + +QG   Y+ A+  Y +A+E+D  ++  W  LG      G    +   +++
Sbjct: 45  AWYNLGNAYYKQGD--YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 102

Query: 147 GLLCSPNNWNCMEKL 161
            L   PNN    + L
Sbjct: 103 ALELDPNNAEAKQNL 117



 Score = 33.1 bits (74), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 2/68 (2%)

Query: 87  ALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQ 146
           A  NL   + +QG   Y+ A+  Y +A+E+D  ++  W  LG      G    +   +++
Sbjct: 11  AWYNLGNAYYKQGD--YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68

Query: 147 GLLCSPNN 154
            L   PNN
Sbjct: 69  ALELDPNN 76


>pdb|3GWJ|A Chain A, Crystal Structure Of Antheraea Pernyi Arylphorin
 pdb|3GWJ|B Chain B, Crystal Structure Of Antheraea Pernyi Arylphorin
 pdb|3GWJ|C Chain C, Crystal Structure Of Antheraea Pernyi Arylphorin
 pdb|3GWJ|D Chain D, Crystal Structure Of Antheraea Pernyi Arylphorin
 pdb|3GWJ|E Chain E, Crystal Structure Of Antheraea Pernyi Arylphorin
 pdb|3GWJ|F Chain F, Crystal Structure Of Antheraea Pernyi Arylphorin
          Length = 674

 Score = 32.3 bits (72), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 11/85 (12%)

Query: 1305 DAAWKMF---CENSLKHFKKALSH---KEDWSYAFYMGKLCEKLGYSHETSLSYYDKAIG 1358
            D  +KMF    +N L + + A+ +   KED  Y +Y         Y+ E  L+Y+ + IG
Sbjct: 152  DTTYKMFRTKMQNGLINPEAAVEYGIVKEDNHYVYYSNYSNAITYYNEEQRLAYFTEDIG 211

Query: 1359 LNQSAVDALYRMHASRLKLLWTCGK 1383
            LN     A Y      L   WT  K
Sbjct: 212  LN-----AYYFFFHIHLPFWWTAEK 231


>pdb|1KSH|B Chain B, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
          Length = 152

 Score = 30.4 bits (67), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 7/97 (7%)

Query: 1217 NIYDEEVDLLLNDGSKHINVTGWRKNVTLPQRVETXXXXXXXCLLMSLALAKTSEQQCEI 1276
            N+ D E   +L  G++ ++V G      +P+++         C  +S  L  +S +Q E 
Sbjct: 23   NLRDAETGKILWQGTEDLSVPGVEHEARVPKKI-------LKCKAVSRELNFSSTEQMEK 75

Query: 1277 LELLALVYYDSLQNVVPFYDQRSVVPSKDAAWKMFCE 1313
              L   VY+        F++   V+P+    W+   E
Sbjct: 76   FRLEQKVYFKGQXLEEWFFEFGFVIPNSTNTWQSLIE 112


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.132    0.389 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,064,598
Number of Sequences: 62578
Number of extensions: 2063563
Number of successful extensions: 4507
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 4495
Number of HSP's gapped (non-prelim): 20
length of query: 1962
length of database: 14,973,337
effective HSP length: 113
effective length of query: 1849
effective length of database: 7,902,023
effective search space: 14610840527
effective search space used: 14610840527
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)