Query 043158
Match_columns 1962
No_of_seqs 369 out of 1252
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 13:28:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043158.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043158hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 99.7 4.3E-17 9.4E-22 197.1 11.9 228 30-269 181-438 (966)
2 KOG4626 O-linked N-acetylgluco 99.7 2.7E-16 5.8E-21 190.4 10.8 227 22-262 210-465 (966)
3 PRK15359 type III secretion sy 99.5 1.9E-13 4.2E-18 145.1 16.5 111 87-199 26-136 (144)
4 TIGR00990 3a0801s09 mitochondr 99.5 2.2E-12 4.8E-17 165.1 24.6 214 32-270 330-559 (615)
5 PRK15359 type III secretion sy 99.4 7.6E-12 1.6E-16 133.0 15.4 117 33-169 24-140 (144)
6 TIGR00990 3a0801s09 mitochondr 99.4 1.5E-11 3.3E-16 157.6 21.0 192 30-269 288-483 (615)
7 PRK09782 bacteriophage N4 rece 99.3 3.1E-11 6.6E-16 161.3 20.2 158 33-192 542-714 (987)
8 PRK11189 lipoprotein NlpI; Pro 99.3 3.3E-11 7.1E-16 141.9 17.9 130 45-190 38-167 (296)
9 PRK11189 lipoprotein NlpI; Pro 99.3 6.9E-11 1.5E-15 139.2 20.5 104 32-155 63-166 (296)
10 PRK10370 formate-dependent nit 99.3 5.8E-11 1.3E-15 132.8 17.2 123 47-189 53-178 (198)
11 TIGR02521 type_IV_pilW type IV 99.3 2.6E-10 5.6E-15 122.8 20.6 150 30-199 28-179 (234)
12 KOG0553 TPR repeat-containing 99.3 3.3E-11 7.2E-16 139.7 13.3 115 84-200 80-194 (304)
13 PRK12370 invasion protein regu 99.3 1.4E-10 3E-15 147.5 19.7 133 47-199 318-451 (553)
14 PRK15179 Vi polysaccharide bio 99.2 1.4E-10 3.1E-15 150.2 19.5 142 32-193 85-226 (694)
15 PRK09782 bacteriophage N4 rece 99.2 2.1E-10 4.5E-15 153.5 21.0 167 30-200 507-688 (987)
16 TIGR02521 type_IV_pilW type IV 99.2 5.8E-10 1.3E-14 120.1 20.6 149 30-198 62-212 (234)
17 COG3063 PilF Tfp pilus assembl 99.2 1.9E-10 4.2E-15 129.6 17.1 147 32-198 34-182 (250)
18 PRK15174 Vi polysaccharide exp 99.2 6.5E-10 1.4E-14 144.2 23.4 99 85-186 110-208 (656)
19 PRK12370 invasion protein regu 99.2 3.3E-10 7.1E-15 144.2 19.8 149 30-198 335-484 (553)
20 TIGR02552 LcrH_SycD type III s 99.2 3.2E-10 6.9E-15 116.6 15.9 111 85-197 17-127 (135)
21 KOG1126 DNA-binding cell divis 99.2 1.6E-10 3.4E-15 144.1 13.6 167 32-200 420-602 (638)
22 PLN03088 SGT1, suppressor of 99.2 3.6E-10 7.8E-15 136.8 16.1 109 88-198 5-113 (356)
23 PRK15174 Vi polysaccharide exp 99.1 8.7E-10 1.9E-14 143.0 19.1 135 37-191 216-354 (656)
24 KOG1126 DNA-binding cell divis 99.1 2.7E-10 5.8E-15 142.0 13.0 160 37-198 357-532 (638)
25 KOG1155 Anaphase-promoting com 99.1 9.2E-10 2E-14 132.6 16.2 135 46-200 343-477 (559)
26 KOG1155 Anaphase-promoting com 99.1 1.8E-09 3.9E-14 130.1 17.2 149 30-198 346-516 (559)
27 PLN02789 farnesyltranstransfer 99.1 9.9E-10 2.1E-14 131.4 14.9 135 43-197 47-184 (320)
28 PRK11447 cellulose synthase su 99.1 2E-09 4.3E-14 147.6 19.5 163 30-199 300-505 (1157)
29 TIGR03302 OM_YfiO outer membra 99.1 3.3E-09 7.2E-14 119.4 18.0 151 32-199 32-213 (235)
30 PLN02789 farnesyltranstransfer 99.1 2.4E-09 5.2E-14 128.2 17.4 100 101-200 51-153 (320)
31 PRK15363 pathogenicity island 99.1 2.2E-09 4.7E-14 116.3 14.7 98 86-185 36-133 (157)
32 PRK15363 pathogenicity island 99.0 2.4E-09 5.1E-14 116.0 14.3 101 31-151 33-133 (157)
33 TIGR02917 PEP_TPR_lipo putativ 99.0 1E-08 2.2E-13 132.0 22.1 146 30-196 666-811 (899)
34 PRK11447 cellulose synthase su 99.0 5.4E-09 1.2E-13 143.4 20.3 142 38-199 274-429 (1157)
35 PRK11788 tetratricopeptide rep 99.0 4.5E-09 9.8E-14 125.9 17.3 166 31-198 33-223 (389)
36 TIGR02917 PEP_TPR_lipo putativ 99.0 1.8E-08 3.9E-13 129.7 23.9 233 30-267 496-750 (899)
37 PRK10370 formate-dependent nit 99.0 3.1E-09 6.8E-14 119.1 14.7 100 101-200 53-155 (198)
38 KOG0553 TPR repeat-containing 99.0 2E-09 4.4E-14 125.2 13.4 122 31-172 79-200 (304)
39 PRK15179 Vi polysaccharide bio 99.0 4.2E-09 9.1E-14 136.8 17.7 112 85-198 86-197 (694)
40 PLN03088 SGT1, suppressor of 99.0 3.5E-09 7.6E-14 128.3 15.9 115 34-168 3-117 (356)
41 KOG2076 RNA polymerase III tra 99.0 6.5E-09 1.4E-13 132.9 17.8 135 32-186 138-272 (895)
42 cd00189 TPR Tetratricopeptide 99.0 6.5E-09 1.4E-13 94.3 12.0 99 87-187 2-100 (100)
43 COG3063 PilF Tfp pilus assembl 99.0 1.2E-08 2.6E-13 115.4 15.9 149 30-198 66-216 (250)
44 PRK10049 pgaA outer membrane p 99.0 2.2E-08 4.8E-13 132.2 21.1 147 32-199 14-160 (765)
45 KOG1125 TPR repeat-containing 98.9 4.1E-09 8.9E-14 130.1 13.1 102 84-187 429-530 (579)
46 PRK11788 tetratricopeptide rep 98.9 3.1E-08 6.7E-13 118.8 20.3 155 34-190 108-284 (389)
47 KOG1125 TPR repeat-containing 98.9 5.8E-09 1.3E-13 128.8 13.6 163 36-198 288-507 (579)
48 TIGR02795 tol_pal_ybgF tol-pal 98.9 2.3E-08 4.9E-13 99.5 14.9 106 86-193 3-114 (119)
49 PF13429 TPR_15: Tetratricopep 98.9 1E-08 2.3E-13 118.9 13.6 112 85-198 146-257 (280)
50 KOG1129 TPR repeat-containing 98.9 3E-09 6.6E-14 123.7 8.6 157 39-197 296-471 (478)
51 PRK10049 pgaA outer membrane p 98.9 6.1E-08 1.3E-12 128.1 20.6 111 86-198 360-470 (765)
52 PF13429 TPR_15: Tetratricopep 98.8 7E-09 1.5E-13 120.4 9.3 135 30-184 143-277 (280)
53 TIGR02552 LcrH_SycD type III s 98.8 5.5E-08 1.2E-12 100.2 14.8 109 30-158 14-122 (135)
54 KOG3060 Uncharacterized conser 98.8 8.7E-08 1.9E-12 109.6 16.1 137 39-195 92-231 (289)
55 PRK02603 photosystem I assembl 98.8 7.7E-08 1.7E-12 104.7 15.1 103 85-189 35-154 (172)
56 COG5010 TadD Flp pilus assembl 98.8 1.4E-07 3.1E-12 108.5 17.6 112 87-200 102-213 (257)
57 CHL00033 ycf3 photosystem I as 98.8 7.4E-08 1.6E-12 104.3 14.6 104 84-189 34-154 (168)
58 PF13414 TPR_11: TPR repeat; P 98.8 1.6E-08 3.4E-13 93.5 7.7 65 86-152 4-69 (69)
59 PF13414 TPR_11: TPR repeat; P 98.8 1.8E-08 4E-13 93.0 8.1 68 119-186 1-69 (69)
60 KOG0548 Molecular co-chaperone 98.8 7.6E-08 1.6E-12 118.5 14.9 160 39-200 304-471 (539)
61 KOG0547 Translocase of outer m 98.8 1E-07 2.2E-12 116.0 15.4 146 32-197 325-470 (606)
62 TIGR03302 OM_YfiO outer membra 98.7 3.3E-07 7.1E-12 103.4 17.1 138 34-186 71-234 (235)
63 TIGR02795 tol_pal_ybgF tol-pal 98.7 2.3E-07 4.9E-12 92.3 13.4 110 33-159 2-114 (119)
64 PRK02603 photosystem I assembl 98.7 3.4E-07 7.4E-12 99.7 15.0 107 31-154 33-153 (172)
65 PRK10153 DNA-binding transcrip 98.7 4.8E-07 1E-11 114.8 18.3 150 32-200 338-498 (517)
66 CHL00033 ycf3 photosystem I as 98.7 3.7E-07 7.9E-12 98.9 14.9 110 30-156 32-155 (168)
67 KOG4162 Predicted calmodulin-b 98.6 2.8E-07 6.1E-12 116.9 15.6 134 36-189 653-788 (799)
68 PF13432 TPR_16: Tetratricopep 98.6 7.8E-08 1.7E-12 88.2 7.4 64 90-155 2-65 (65)
69 cd05804 StaR_like StaR_like; a 98.6 1E-06 2.2E-11 104.8 18.7 153 32-186 42-217 (355)
70 KOG0543 FKBP-type peptidyl-pro 98.6 5.1E-07 1.1E-11 109.1 16.0 150 30-184 205-355 (397)
71 PRK14574 hmsH outer membrane p 98.6 1.4E-06 2.9E-11 115.8 20.1 163 30-195 31-209 (822)
72 PF09976 TPR_21: Tetratricopep 98.6 1.3E-06 2.9E-11 92.7 16.2 135 30-182 8-145 (145)
73 cd00189 TPR Tetratricopeptide 98.6 7.9E-07 1.7E-11 80.6 11.8 99 35-153 2-100 (100)
74 KOG0550 Molecular chaperone (D 98.5 4.4E-07 9.5E-12 109.1 12.5 149 30-187 200-353 (486)
75 COG4783 Putative Zn-dependent 98.5 2.1E-06 4.4E-11 105.6 18.4 147 32-198 305-451 (484)
76 KOG1128 Uncharacterized conser 98.5 3E-07 6.5E-12 116.2 10.6 139 37-195 489-627 (777)
77 PF13432 TPR_16: Tetratricopep 98.5 3E-07 6.6E-12 84.3 8.0 65 125-189 1-65 (65)
78 PRK11906 transcriptional regul 98.5 2.9E-06 6.3E-11 104.7 18.3 151 35-198 257-415 (458)
79 KOG1173 Anaphase-promoting com 98.5 1.2E-06 2.7E-11 108.4 14.6 165 31-197 344-531 (611)
80 COG2956 Predicted N-acetylgluc 98.5 3E-06 6.6E-11 99.7 17.1 167 32-200 106-294 (389)
81 KOG0547 Translocase of outer m 98.5 1E-06 2.2E-11 107.5 13.4 143 36-198 363-511 (606)
82 PF12895 Apc3: Anaphase-promot 98.4 3.9E-07 8.5E-12 88.1 6.9 80 101-181 3-84 (84)
83 PRK15331 chaperone protein Sic 98.4 1.9E-06 4.1E-11 94.4 12.5 107 30-157 34-140 (165)
84 cd05804 StaR_like StaR_like; a 98.4 4.5E-06 9.7E-11 99.3 16.8 153 30-200 3-159 (355)
85 PRK10803 tol-pal system protei 98.4 5.4E-06 1.2E-10 97.4 15.9 111 86-198 143-260 (263)
86 KOG2002 TPR-containing nuclear 98.4 4.2E-06 9.1E-11 108.6 15.5 170 29-200 160-387 (1018)
87 KOG0624 dsRNA-activated protei 98.4 1.3E-05 2.8E-10 94.8 18.0 157 30-191 103-259 (504)
88 PRK10747 putative protoheme IX 98.4 3E-05 6.4E-10 95.7 22.3 176 91-272 159-380 (398)
89 COG5010 TadD Flp pilus assembl 98.3 1.2E-05 2.5E-10 93.1 16.3 127 35-181 102-228 (257)
90 KOG1128 Uncharacterized conser 98.3 2.6E-06 5.6E-11 108.0 11.9 158 33-192 424-590 (777)
91 PLN03098 LPA1 LOW PSII ACCUMUL 98.3 1.6E-06 3.5E-11 106.8 9.8 65 84-150 74-141 (453)
92 KOG1173 Anaphase-promoting com 98.3 1.2E-05 2.7E-10 99.9 17.3 169 30-200 309-500 (611)
93 KOG0550 Molecular chaperone (D 98.3 2.8E-06 6.1E-11 102.4 11.3 113 84-198 202-330 (486)
94 KOG2003 TPR repeat-containing 98.3 7.2E-06 1.6E-10 98.7 14.1 162 36-199 422-602 (840)
95 PLN03098 LPA1 LOW PSII ACCUMUL 98.3 2E-06 4.4E-11 105.9 9.9 72 116-187 70-145 (453)
96 KOG0624 dsRNA-activated protei 98.3 9.8E-06 2.1E-10 95.7 14.9 150 30-199 35-199 (504)
97 KOG0548 Molecular co-chaperone 98.3 2.8E-06 6E-11 105.2 10.9 107 88-196 5-111 (539)
98 PRK10747 putative protoheme IX 98.2 2E-05 4.4E-10 97.2 17.3 132 30-185 260-391 (398)
99 PRK14574 hmsH outer membrane p 98.2 2.5E-05 5.5E-10 104.0 19.2 148 42-195 376-524 (822)
100 KOG0543 FKBP-type peptidyl-pro 98.2 7.6E-06 1.6E-10 99.3 12.9 111 85-197 208-333 (397)
101 PF13371 TPR_9: Tetratricopept 98.2 4.2E-06 9.1E-11 78.1 8.5 67 92-160 2-68 (73)
102 KOG2002 TPR-containing nuclear 98.2 1.4E-05 3E-10 104.0 15.8 115 84-200 306-425 (1018)
103 KOG2003 TPR repeat-containing 98.2 7E-06 1.5E-10 98.7 12.0 111 86-198 525-635 (840)
104 TIGR00540 hemY_coli hemY prote 98.2 2.9E-05 6.2E-10 96.0 17.2 134 31-184 261-399 (409)
105 PF14559 TPR_19: Tetratricopep 98.2 4.2E-06 9E-11 77.1 7.4 63 101-163 5-67 (68)
106 PRK15331 chaperone protein Sic 98.2 1.1E-05 2.3E-10 88.6 11.6 101 86-189 38-138 (165)
107 PRK10803 tol-pal system protei 98.2 2.3E-05 5.1E-10 92.1 15.3 110 32-158 141-254 (263)
108 PF12688 TPR_5: Tetratrico pep 98.2 2.8E-05 6.1E-10 81.7 13.8 95 87-183 3-103 (120)
109 KOG1129 TPR repeat-containing 98.2 2.2E-05 4.7E-10 92.5 14.1 100 101-200 338-440 (478)
110 PF13371 TPR_9: Tetratricopept 98.1 8.9E-06 1.9E-10 75.9 8.7 72 127-198 1-72 (73)
111 TIGR00540 hemY_coli hemY prote 98.1 9.8E-05 2.1E-09 91.3 20.1 139 31-189 82-221 (409)
112 COG4235 Cytochrome c biogenesi 98.1 1.7E-05 3.6E-10 93.6 12.6 97 102-198 137-236 (287)
113 COG4235 Cytochrome c biogenesi 98.1 3.5E-05 7.7E-10 90.9 14.2 104 84-189 155-261 (287)
114 PF12895 Apc3: Anaphase-promot 98.1 6.2E-06 1.3E-10 79.8 6.5 84 45-147 1-84 (84)
115 COG4783 Putative Zn-dependent 98.1 3.7E-05 8.1E-10 94.9 14.6 114 85-200 306-419 (484)
116 PF13525 YfiO: Outer membrane 98.1 0.0001 2.2E-09 83.2 17.1 144 31-191 3-177 (203)
117 PRK14720 transcript cleavage f 98.1 3.4E-05 7.4E-10 102.4 15.2 134 30-184 28-178 (906)
118 PF12688 TPR_5: Tetratrico pep 98.1 4.7E-05 1E-09 80.0 12.9 99 34-149 2-103 (120)
119 PRK10866 outer membrane biogen 98.0 0.00021 4.5E-09 83.2 19.4 142 32-190 31-210 (243)
120 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 5.9E-05 1.3E-09 93.2 15.6 112 45-179 181-292 (395)
121 KOG2076 RNA polymerase III tra 98.0 5.2E-05 1.1E-09 98.4 15.3 114 85-200 139-252 (895)
122 KOG4162 Predicted calmodulin-b 98.0 2.8E-05 6.1E-10 99.4 12.7 112 87-200 652-765 (799)
123 KOG1840 Kinesin light chain [C 98.0 3.5E-05 7.6E-10 97.5 13.4 136 38-185 246-397 (508)
124 PF14559 TPR_19: Tetratricopep 98.0 1.3E-05 2.9E-10 73.7 6.7 68 131-198 1-68 (68)
125 KOG4648 Uncharacterized conser 98.0 1.6E-05 3.5E-10 93.9 8.8 108 85-194 97-204 (536)
126 KOG1156 N-terminal acetyltrans 98.0 4.4E-05 9.6E-10 96.3 13.1 140 34-193 8-147 (700)
127 PF06552 TOM20_plant: Plant sp 98.0 3.1E-05 6.8E-10 85.9 10.4 93 103-195 7-120 (186)
128 PF04733 Coatomer_E: Coatomer 98.0 0.00018 4E-09 85.8 16.9 103 85-192 170-273 (290)
129 PRK10153 DNA-binding transcrip 97.9 0.00013 2.9E-09 93.1 15.3 112 88-200 342-464 (517)
130 KOG4555 TPR repeat-containing 97.9 0.00019 4.1E-09 76.1 13.5 102 30-151 40-145 (175)
131 KOG1840 Kinesin light chain [C 97.9 0.0001 2.2E-09 93.4 13.8 139 34-184 200-354 (508)
132 PF09976 TPR_21: Tetratricopep 97.8 0.00013 2.7E-09 77.8 11.5 98 33-148 48-145 (145)
133 KOG4234 TPR repeat-containing 97.8 0.0002 4.3E-09 80.5 12.8 121 30-165 92-212 (271)
134 KOG1174 Anaphase-promoting com 97.8 0.00056 1.2E-08 83.0 17.1 169 32-202 333-518 (564)
135 PRK11906 transcriptional regul 97.8 0.00017 3.6E-09 89.6 13.2 111 89-199 259-382 (458)
136 COG1729 Uncharacterized protei 97.8 0.00023 5.1E-09 83.3 13.7 110 32-158 140-252 (262)
137 KOG3060 Uncharacterized conser 97.8 0.00071 1.5E-08 78.5 16.8 131 41-191 60-190 (289)
138 PRK14720 transcript cleavage f 97.8 0.00043 9.2E-09 92.4 17.0 169 24-199 56-267 (906)
139 KOG1127 TPR repeat-containing 97.7 0.00029 6.3E-09 92.0 14.5 114 85-200 492-641 (1238)
140 KOG1156 N-terminal acetyltrans 97.7 0.00024 5.2E-09 90.0 13.4 137 29-185 37-173 (700)
141 KOG4234 TPR repeat-containing 97.7 0.00033 7.1E-09 78.8 13.0 107 84-192 94-205 (271)
142 KOG1174 Anaphase-promoting com 97.7 0.00071 1.5E-08 82.2 16.2 163 32-196 231-409 (564)
143 KOG0495 HAT repeat protein [RN 97.7 0.001 2.3E-08 84.1 18.0 204 43-270 661-868 (913)
144 COG1729 Uncharacterized protei 97.7 0.00057 1.2E-08 80.2 14.9 109 88-198 144-258 (262)
145 COG2956 Predicted N-acetylgluc 97.7 0.00073 1.6E-08 80.4 15.1 151 37-189 73-248 (389)
146 PF13424 TPR_12: Tetratricopep 97.6 8.7E-05 1.9E-09 70.4 6.1 63 86-150 6-75 (78)
147 PF13424 TPR_12: Tetratricopep 97.6 5.5E-05 1.2E-09 71.8 4.4 66 119-184 3-75 (78)
148 KOG4555 TPR repeat-containing 97.6 0.00061 1.3E-08 72.4 11.5 101 87-189 45-149 (175)
149 KOG1127 TPR repeat-containing 97.6 0.00026 5.6E-09 92.5 10.4 154 33-188 492-663 (1238)
150 PF13512 TPR_18: Tetratricopep 97.5 0.0011 2.3E-08 71.8 13.3 107 32-155 9-133 (142)
151 KOG4648 Uncharacterized conser 97.5 0.00037 7.9E-09 82.8 9.6 106 36-161 100-205 (536)
152 PF14938 SNAP: Soluble NSF att 97.5 0.00043 9.3E-09 81.8 9.9 140 30-184 31-184 (282)
153 PF14938 SNAP: Soluble NSF att 97.4 0.00096 2.1E-08 78.9 12.5 145 32-189 73-230 (282)
154 KOG0495 HAT repeat protein [RN 97.4 0.0027 5.9E-08 80.6 16.5 157 36-195 587-759 (913)
155 COG0457 NrfG FOG: TPR repeat [ 97.4 0.013 2.8E-07 59.9 18.5 102 94-197 139-244 (291)
156 KOG4642 Chaperone-dependent E3 97.4 0.00034 7.4E-09 80.4 7.6 94 89-184 14-107 (284)
157 PRK10866 outer membrane biogen 97.4 0.003 6.4E-08 73.8 15.6 110 85-196 32-165 (243)
158 PF13428 TPR_14: Tetratricopep 97.4 0.00024 5.3E-09 61.5 5.0 41 122-162 2-42 (44)
159 COG0457 NrfG FOG: TPR repeat [ 97.4 0.01 2.3E-07 60.6 17.7 100 86-187 168-268 (291)
160 PF06552 TOM20_plant: Plant sp 97.3 0.00082 1.8E-08 75.0 9.5 92 49-158 7-117 (186)
161 KOG0545 Aryl-hydrocarbon recep 97.3 0.0016 3.6E-08 75.1 11.7 120 34-158 179-301 (329)
162 COG4785 NlpI Lipoprotein NlpI, 97.3 0.00072 1.6E-08 76.9 8.2 105 84-190 64-168 (297)
163 PF13431 TPR_17: Tetratricopep 97.3 0.00028 6.1E-09 58.5 3.7 33 109-141 1-33 (34)
164 PF13428 TPR_14: Tetratricopep 97.3 0.00056 1.2E-08 59.3 5.7 43 86-130 2-44 (44)
165 COG4700 Uncharacterized protei 97.2 0.0068 1.5E-07 68.0 14.5 124 35-178 91-216 (251)
166 KOG0376 Serine-threonine phosp 97.2 0.00047 1E-08 85.5 5.9 106 88-195 7-112 (476)
167 PF04733 Coatomer_E: Coatomer 97.1 0.0016 3.5E-08 77.8 9.9 109 90-200 136-246 (290)
168 PF13525 YfiO: Outer membrane 97.1 0.0063 1.4E-07 68.9 14.0 109 85-195 5-130 (203)
169 PF13512 TPR_18: Tetratricopep 97.1 0.0078 1.7E-07 65.3 13.6 104 86-191 11-135 (142)
170 PF00515 TPR_1: Tetratricopept 97.0 0.00081 1.8E-08 54.6 4.1 33 121-153 1-33 (34)
171 PRK04841 transcriptional regul 97.0 0.011 2.3E-07 79.9 16.8 98 86-185 532-642 (903)
172 PF13431 TPR_17: Tetratricopep 97.0 0.00058 1.3E-08 56.7 3.0 33 143-175 1-33 (34)
173 PLN03081 pentatricopeptide (PP 97.0 0.0083 1.8E-07 79.3 15.3 145 36-184 394-557 (697)
174 KOG2376 Signal recognition par 97.0 0.0095 2E-07 75.5 14.7 157 30-189 43-258 (652)
175 KOG1130 Predicted G-alpha GTPa 96.9 0.00048 1E-08 83.4 3.1 158 19-184 122-304 (639)
176 PF07719 TPR_2: Tetratricopept 96.9 0.0015 3.2E-08 52.5 4.8 34 121-154 1-34 (34)
177 PRK04841 transcriptional regul 96.9 0.015 3.3E-07 78.4 17.1 134 37-185 456-603 (903)
178 PLN03218 maturation of RBCL 1; 96.9 0.045 9.8E-07 75.8 21.4 100 85-187 542-648 (1060)
179 KOG0551 Hsp90 co-chaperone CNS 96.9 0.0046 1E-07 74.1 10.3 112 85-198 81-196 (390)
180 PF09295 ChAPs: ChAPs (Chs5p-A 96.9 0.011 2.5E-07 73.5 14.2 97 101-200 183-279 (395)
181 PF12569 NARP1: NMDA receptor- 96.8 0.035 7.5E-07 71.6 18.1 67 123-189 196-262 (517)
182 COG4700 Uncharacterized protei 96.8 0.011 2.3E-07 66.5 11.4 102 86-189 90-194 (251)
183 PF03704 BTAD: Bacterial trans 96.8 0.036 7.7E-07 58.9 15.1 110 35-149 8-124 (146)
184 KOG4642 Chaperone-dependent E3 96.7 0.0033 7.1E-08 72.6 7.5 99 32-150 9-107 (284)
185 KOG1130 Predicted G-alpha GTPa 96.7 0.0012 2.7E-08 80.0 4.1 101 84-184 134-264 (639)
186 PLN03218 maturation of RBCL 1; 96.7 0.16 3.4E-06 70.7 24.3 151 32-185 506-679 (1060)
187 PF12569 NARP1: NMDA receptor- 96.6 0.015 3.2E-07 74.8 12.7 97 87-185 196-292 (517)
188 COG3071 HemY Uncharacterized e 96.5 0.043 9.4E-07 67.4 15.4 124 37-184 267-390 (400)
189 PLN03081 pentatricopeptide (PP 96.5 0.029 6.2E-07 74.4 15.3 151 38-192 365-531 (697)
190 PF05843 Suf: Suppressor of fo 96.5 0.044 9.4E-07 65.4 15.2 132 45-195 13-147 (280)
191 PLN03077 Protein ECB2; Provisi 96.5 0.049 1.1E-06 73.8 17.1 136 42-198 563-700 (857)
192 KOG2376 Signal recognition par 96.4 0.034 7.3E-07 70.8 14.2 148 32-184 11-204 (652)
193 PLN03077 Protein ECB2; Provisi 96.4 0.04 8.7E-07 74.7 16.1 120 43-182 599-718 (857)
194 PF00515 TPR_1: Tetratricopept 96.4 0.0045 9.8E-08 50.2 4.4 33 86-120 2-34 (34)
195 KOG0376 Serine-threonine phosp 96.4 0.0042 9.2E-08 77.4 6.1 111 35-165 6-116 (476)
196 PF03704 BTAD: Bacterial trans 96.3 0.064 1.4E-06 57.0 13.4 96 86-183 7-124 (146)
197 KOG0545 Aryl-hydrocarbon recep 96.3 0.024 5.3E-07 65.9 10.6 103 85-189 178-298 (329)
198 COG4105 ComL DNA uptake lipopr 96.1 0.26 5.6E-06 58.3 18.2 141 32-189 33-201 (254)
199 PF07719 TPR_2: Tetratricopept 96.0 0.013 2.9E-07 47.0 5.1 33 86-120 2-34 (34)
200 KOG3081 Vesicle coat complex C 96.0 0.09 1.9E-06 62.2 13.6 150 34-189 109-276 (299)
201 KOG3081 Vesicle coat complex C 96.0 0.19 4.1E-06 59.6 16.0 101 93-198 145-250 (299)
202 KOG3824 Huntingtin interacting 95.7 0.028 6E-07 66.9 7.9 62 101-162 130-191 (472)
203 COG4785 NlpI Lipoprotein NlpI, 95.7 0.07 1.5E-06 61.4 10.8 134 31-185 63-197 (297)
204 PF13181 TPR_8: Tetratricopept 95.6 0.015 3.3E-07 47.0 4.0 32 122-153 2-33 (34)
205 COG2976 Uncharacterized protei 95.5 0.47 1E-05 54.3 16.5 98 88-190 92-194 (207)
206 KOG1308 Hsp70-interacting prot 95.4 0.012 2.6E-07 71.0 3.6 99 99-197 126-224 (377)
207 KOG0551 Hsp90 co-chaperone CNS 95.3 0.049 1.1E-06 65.7 8.5 107 32-154 80-186 (390)
208 PF14561 TPR_20: Tetratricopep 95.3 0.11 2.3E-06 52.6 9.7 78 105-182 6-85 (90)
209 KOG1308 Hsp70-interacting prot 95.2 0.019 4.2E-07 69.3 4.7 129 32-181 113-241 (377)
210 KOG2796 Uncharacterized conser 95.2 0.16 3.5E-06 59.8 11.9 137 34-189 178-320 (366)
211 COG3118 Thioredoxin domain-con 95.2 0.32 6.8E-06 58.5 14.3 142 34-197 135-278 (304)
212 KOG4340 Uncharacterized conser 95.1 0.2 4.4E-06 59.8 12.5 72 113-184 134-207 (459)
213 COG4976 Predicted methyltransf 95.1 0.069 1.5E-06 61.9 8.3 106 101-206 9-126 (287)
214 COG3071 HemY Uncharacterized e 95.1 0.7 1.5E-05 57.3 17.2 131 33-183 84-215 (400)
215 KOG1941 Acetylcholine receptor 95.1 0.084 1.8E-06 64.2 9.3 135 36-184 125-275 (518)
216 KOG3785 Uncharacterized conser 95.0 0.55 1.2E-05 57.2 15.6 135 42-199 31-195 (557)
217 KOG4507 Uncharacterized conser 94.8 0.045 9.7E-07 69.3 6.4 115 90-205 611-726 (886)
218 KOG4507 Uncharacterized conser 94.8 0.11 2.4E-06 66.0 9.7 100 46-164 620-719 (886)
219 PF05843 Suf: Suppressor of fo 94.6 0.18 4E-06 60.2 10.7 102 86-189 2-104 (280)
220 PRK10941 hypothetical protein; 94.5 0.2 4.4E-06 59.9 10.7 79 122-200 182-260 (269)
221 KOG3785 Uncharacterized conser 94.2 0.25 5.4E-06 60.0 10.4 107 85-197 91-227 (557)
222 PRK10941 hypothetical protein; 94.1 0.19 4.2E-06 60.0 9.5 71 86-158 182-252 (269)
223 KOG3824 Huntingtin interacting 94.1 0.15 3.2E-06 61.0 8.3 82 102-198 112-193 (472)
224 PF13181 TPR_8: Tetratricopept 94.0 0.079 1.7E-06 42.8 4.2 32 86-119 2-33 (34)
225 smart00028 TPR Tetratricopepti 93.8 0.077 1.7E-06 39.5 3.6 32 122-153 2-33 (34)
226 PF04184 ST7: ST7 protein; In 93.7 0.66 1.4E-05 59.1 13.1 61 121-181 259-321 (539)
227 PF12968 DUF3856: Domain of Un 93.6 0.74 1.6E-05 49.2 11.4 99 86-184 8-129 (144)
228 PF14853 Fis1_TPR_C: Fis1 C-te 93.6 0.2 4.4E-06 46.1 6.5 45 156-200 2-46 (53)
229 KOG1070 rRNA processing protei 93.5 0.96 2.1E-05 62.7 14.9 123 43-185 1540-1664(1710)
230 KOG3617 WD40 and TPR repeat-co 93.5 0.42 9.1E-06 62.8 11.1 97 86-184 859-996 (1416)
231 PF13281 DUF4071: Domain of un 93.5 2.3 5.1E-05 53.2 17.3 71 87-157 181-262 (374)
232 KOG2396 HAT (Half-A-TPR) repea 93.4 0.53 1.2E-05 59.7 11.7 96 103-198 87-183 (568)
233 KOG2471 TPR repeat-containing 93.4 0.2 4.4E-06 62.8 8.1 80 85-166 283-380 (696)
234 KOG4340 Uncharacterized conser 93.2 0.71 1.5E-05 55.4 11.6 91 85-177 144-263 (459)
235 KOG1310 WD40 repeat protein [G 93.0 0.22 4.9E-06 62.9 7.6 89 101-189 388-479 (758)
236 PF13176 TPR_7: Tetratricopept 92.9 0.15 3.2E-06 42.8 4.2 23 88-112 2-24 (36)
237 PF04184 ST7: ST7 protein; In 92.9 1.6 3.6E-05 55.7 14.8 143 36-197 262-427 (539)
238 KOG2610 Uncharacterized conser 92.8 0.59 1.3E-05 56.8 10.3 100 101-200 117-220 (491)
239 KOG1070 rRNA processing protei 92.7 1.5 3.2E-05 61.1 14.9 161 33-195 1458-1640(1710)
240 COG2976 Uncharacterized protei 92.6 1.6 3.5E-05 50.1 13.0 102 34-154 90-192 (207)
241 COG3898 Uncharacterized membra 92.5 5.9 0.00013 49.5 18.3 56 137-192 245-300 (531)
242 KOG2053 Mitochondrial inherita 92.5 1.9 4E-05 58.0 15.1 145 39-204 15-160 (932)
243 PF13176 TPR_7: Tetratricopept 92.3 0.18 3.9E-06 42.2 3.9 28 123-150 1-28 (36)
244 PF02259 FAT: FAT domain; Int 92.3 3.8 8.2E-05 49.2 16.7 144 30-189 143-343 (352)
245 COG4649 Uncharacterized protei 92.3 4.7 0.0001 45.9 15.6 147 30-196 55-207 (221)
246 KOG2796 Uncharacterized conser 92.1 0.69 1.5E-05 54.9 9.5 107 90-198 182-295 (366)
247 PF10300 DUF3808: Protein of u 92.1 2.1 4.7E-05 55.0 14.9 128 47-185 202-335 (468)
248 PF04781 DUF627: Protein of un 92.0 1.4 3E-05 46.5 10.8 106 39-184 2-107 (111)
249 PF09613 HrpB1_HrpK: Bacterial 91.7 5.2 0.00011 44.9 15.3 108 86-197 11-118 (160)
250 smart00028 TPR Tetratricopepti 91.7 0.3 6.4E-06 36.2 4.2 33 86-120 2-34 (34)
251 KOG2053 Mitochondrial inherita 91.6 0.95 2.1E-05 60.6 11.1 88 101-188 23-110 (932)
252 KOG1941 Acetylcholine receptor 91.5 1 2.2E-05 55.4 10.3 154 33-188 6-195 (518)
253 KOG1915 Cell cycle control pro 91.5 1.2 2.7E-05 56.1 11.2 106 84-192 72-177 (677)
254 PF04910 Tcf25: Transcriptiona 91.3 4.5 9.8E-05 50.5 16.2 163 30-194 37-232 (360)
255 PF13174 TPR_6: Tetratricopept 91.3 0.26 5.6E-06 39.2 3.7 31 123-153 2-32 (33)
256 COG4976 Predicted methyltransf 91.3 0.37 8E-06 56.2 6.2 70 129-198 3-72 (287)
257 KOG1915 Cell cycle control pro 91.3 9.3 0.0002 48.8 18.3 105 93-200 445-551 (677)
258 PF10300 DUF3808: Protein of u 91.3 1.5 3.2E-05 56.4 12.3 95 87-183 269-375 (468)
259 PF12968 DUF3856: Domain of Un 91.1 3.3 7.2E-05 44.5 12.4 111 30-149 6-128 (144)
260 KOG1586 Protein required for f 91.0 4.6 0.0001 47.7 14.6 102 88-190 116-230 (288)
261 KOG1310 WD40 repeat protein [G 90.6 0.59 1.3E-05 59.3 7.5 108 29-154 370-478 (758)
262 PF10373 EST1_DNA_bind: Est1 D 90.3 0.74 1.6E-05 53.7 7.8 62 106-167 1-62 (278)
263 KOG1586 Protein required for f 90.0 4 8.6E-05 48.2 12.9 101 86-189 75-188 (288)
264 COG4105 ComL DNA uptake lipopr 89.6 1.8 3.8E-05 51.6 10.0 79 120-198 33-117 (254)
265 COG0790 FOG: TPR repeat, SEL1 88.5 21 0.00045 42.4 18.2 112 85-200 109-234 (292)
266 PF08424 NRDE-2: NRDE-2, neces 88.5 3.1 6.7E-05 51.0 11.5 88 108-195 6-105 (321)
267 PF14561 TPR_20: Tetratricopep 88.3 1.1 2.3E-05 45.5 6.2 49 140-188 7-55 (90)
268 COG3898 Uncharacterized membra 88.2 11 0.00024 47.4 15.4 53 101-153 243-295 (531)
269 PF13174 TPR_6: Tetratricopept 88.1 0.78 1.7E-05 36.4 4.1 33 156-188 1-33 (33)
270 KOG3364 Membrane protein invol 88.0 3.9 8.4E-05 44.8 10.3 95 106-200 17-116 (149)
271 PF13374 TPR_10: Tetratricopep 88.0 0.86 1.9E-05 37.8 4.5 27 123-149 4-30 (42)
272 KOG2610 Uncharacterized conser 87.7 5.5 0.00012 49.0 12.4 119 38-178 108-232 (491)
273 PF14853 Fis1_TPR_C: Fis1 C-te 87.5 1.6 3.5E-05 40.4 6.2 39 122-160 2-40 (53)
274 KOG1585 Protein required for f 87.3 3 6.5E-05 49.5 9.7 139 31-184 68-219 (308)
275 COG3914 Spy Predicted O-linked 87.2 3.8 8.3E-05 53.3 11.4 108 91-200 73-187 (620)
276 KOG2471 TPR repeat-containing 87.1 1.2 2.7E-05 56.3 6.9 107 87-195 242-375 (696)
277 KOG1585 Protein required for f 87.1 8.4 0.00018 45.9 13.0 137 30-180 27-175 (308)
278 PF10602 RPN7: 26S proteasome 84.7 8.7 0.00019 43.5 11.6 92 86-179 37-137 (177)
279 KOG0530 Protein farnesyltransf 84.7 12 0.00025 45.2 12.7 111 84-195 76-187 (318)
280 PF13374 TPR_10: Tetratricopep 84.6 1.7 3.7E-05 36.0 4.6 29 86-116 3-31 (42)
281 COG3118 Thioredoxin domain-con 84.1 5.7 0.00012 48.3 10.2 103 93-198 142-245 (304)
282 KOG0546 HSP90 co-chaperone CPR 83.9 1.4 3E-05 54.2 5.2 132 38-171 227-359 (372)
283 PF02259 FAT: FAT domain; Int 83.7 12 0.00027 44.9 13.2 111 86-198 147-301 (352)
284 COG3914 Spy Predicted O-linked 83.7 7.9 0.00017 50.6 11.7 82 85-168 101-189 (620)
285 PF09986 DUF2225: Uncharacteri 83.6 7.8 0.00017 45.2 10.9 107 43-162 87-207 (214)
286 TIGR02561 HrpB1_HrpK type III 82.9 20 0.00044 40.0 13.0 105 91-199 16-120 (153)
287 COG0790 FOG: TPR repeat, SEL1 82.7 80 0.0017 37.6 19.2 96 88-188 151-270 (292)
288 KOG1550 Extracellular protein 81.4 26 0.00057 46.2 15.8 134 47-199 263-406 (552)
289 COG2912 Uncharacterized conser 80.4 6.6 0.00014 47.3 8.9 78 122-199 182-259 (269)
290 KOG2047 mRNA splicing factor [ 79.7 26 0.00056 46.5 14.1 95 101-195 491-591 (835)
291 COG5191 Uncharacterized conser 79.2 3.1 6.7E-05 50.6 5.7 90 109-198 95-185 (435)
292 PF09986 DUF2225: Uncharacteri 76.9 16 0.00034 42.8 10.5 83 102-184 92-194 (214)
293 KOG2300 Uncharacterized conser 76.5 33 0.00072 44.3 13.5 132 30-177 4-149 (629)
294 PF15015 NYD-SP12_N: Spermatog 75.8 9.5 0.00021 48.1 8.6 54 90-145 233-286 (569)
295 PRK13184 pknD serine/threonine 75.5 23 0.00049 49.5 12.9 133 43-191 485-627 (932)
296 COG2912 Uncharacterized conser 75.2 11 0.00024 45.5 8.8 71 87-159 183-253 (269)
297 KOG0546 HSP90 co-chaperone CPR 75.0 3.3 7.2E-05 51.2 4.5 107 86-194 223-348 (372)
298 PF08631 SPO22: Meiosis protei 74.7 71 0.0015 38.5 15.5 130 44-185 4-151 (278)
299 KOG1550 Extracellular protein 74.4 36 0.00077 45.1 14.0 112 85-202 244-373 (552)
300 PF09670 Cas_Cas02710: CRISPR- 73.8 39 0.00084 42.8 13.5 133 34-184 132-270 (379)
301 PF08631 SPO22: Meiosis protei 72.7 1.5E+02 0.0033 35.7 17.6 118 30-151 32-151 (278)
302 KOG2396 HAT (Half-A-TPR) repea 72.3 12 0.00027 48.1 8.6 72 86-159 106-178 (568)
303 PF10373 EST1_DNA_bind: Est1 D 71.9 8.8 0.00019 44.9 7.0 62 140-201 1-62 (278)
304 KOG0529 Protein geranylgeranyl 71.9 55 0.0012 41.7 13.8 97 103-199 91-193 (421)
305 KOG0985 Vesicle coat protein c 71.7 33 0.00072 47.4 12.3 58 85-149 1104-1161(1666)
306 PF04910 Tcf25: Transcriptiona 71.0 24 0.00052 44.3 10.7 78 113-190 32-139 (360)
307 COG3629 DnrI DNA-binding trans 70.9 19 0.0004 44.0 9.4 79 103-183 137-215 (280)
308 PF13281 DUF4071: Domain of un 70.1 47 0.001 42.1 12.9 108 86-195 142-266 (374)
309 KOG2300 Uncharacterized conser 70.0 1.3E+02 0.0028 39.4 16.3 143 32-195 366-528 (629)
310 PF12862 Apc5: Anaphase-promot 69.6 11 0.00025 38.0 6.3 51 101-151 12-71 (94)
311 PF12862 Apc5: Anaphase-promot 68.0 23 0.00051 35.8 8.1 68 40-118 5-72 (94)
312 TIGR02710 CRISPR-associated pr 68.0 66 0.0014 40.9 13.5 132 38-184 135-275 (380)
313 COG4649 Uncharacterized protei 67.3 69 0.0015 37.0 12.0 118 34-168 95-213 (221)
314 KOG2047 mRNA splicing factor [ 66.7 1.6E+02 0.0035 39.7 16.5 150 33-184 425-615 (835)
315 PF08424 NRDE-2: NRDE-2, neces 66.6 48 0.001 40.9 11.9 82 103-184 47-131 (321)
316 KOG3617 WD40 and TPR repeat-co 65.4 49 0.0011 45.1 11.8 63 86-150 913-996 (1416)
317 KOG4814 Uncharacterized conser 64.8 38 0.00082 45.0 10.7 101 34-148 355-455 (872)
318 COG4941 Predicted RNA polymera 64.1 42 0.00091 41.8 10.3 97 102-199 311-409 (415)
319 COG3629 DnrI DNA-binding trans 61.3 31 0.00068 42.1 8.7 68 81-150 149-216 (280)
320 PF15015 NYD-SP12_N: Spermatog 61.2 20 0.00043 45.5 7.1 58 124-181 231-288 (569)
321 PRK13184 pknD serine/threonine 60.7 31 0.00067 48.3 9.6 97 101-198 489-595 (932)
322 PF04053 Coatomer_WDAD: Coatom 60.6 20 0.00044 46.2 7.5 43 101-148 332-374 (443)
323 KOG0530 Protein farnesyltransf 60.1 1E+02 0.0022 37.6 12.3 98 101-198 57-156 (318)
324 PF10579 Rapsyn_N: Rapsyn N-te 58.9 28 0.00062 35.2 6.5 51 91-143 12-65 (80)
325 COG4941 Predicted RNA polymera 58.7 34 0.00075 42.5 8.4 70 89-160 333-404 (415)
326 PF07720 TPR_3: Tetratricopept 58.6 20 0.00044 30.9 4.8 31 122-152 2-34 (36)
327 PF09613 HrpB1_HrpK: Bacterial 58.6 75 0.0016 36.1 10.4 78 121-198 10-87 (160)
328 PF11207 DUF2989: Protein of u 57.8 45 0.00097 39.0 8.8 56 119-175 139-198 (203)
329 KOG4814 Uncharacterized conser 54.8 81 0.0018 42.2 11.1 91 92-184 361-457 (872)
330 COG2909 MalT ATP-dependent tra 54.4 2.6E+02 0.0056 39.1 15.9 125 34-169 416-551 (894)
331 PF07721 TPR_4: Tetratricopept 53.2 14 0.00031 29.0 2.8 21 124-144 4-24 (26)
332 KOG3616 Selective LIM binding 51.3 1E+02 0.0023 41.5 11.2 147 36-186 827-1026(1636)
333 KOG3364 Membrane protein invol 50.2 55 0.0012 36.4 7.5 74 86-159 33-109 (149)
334 PF10602 RPN7: 26S proteasome 49.2 77 0.0017 36.0 8.9 64 121-184 36-102 (177)
335 PF10345 Cohesin_load: Cohesin 49.1 3.4E+02 0.0074 36.5 16.2 109 84-194 58-180 (608)
336 PF07721 TPR_4: Tetratricopept 48.7 20 0.00043 28.3 3.0 25 155-179 1-25 (26)
337 KOG1914 mRNA cleavage and poly 48.3 64 0.0014 42.4 8.8 73 111-184 10-82 (656)
338 smart00386 HAT HAT (Half-A-TPR 47.9 35 0.00076 26.5 4.4 29 102-130 2-30 (33)
339 KOG0529 Protein geranylgeranyl 47.8 1.7E+02 0.0037 37.6 12.2 115 84-198 108-238 (421)
340 KOG1839 Uncharacterized protei 47.7 1.1E+02 0.0024 43.9 11.4 141 30-182 970-1126(1236)
341 COG5191 Uncharacterized conser 47.5 25 0.00054 43.2 4.9 60 101-160 121-181 (435)
342 PF04053 Coatomer_WDAD: Coatom 47.0 1.2E+02 0.0025 39.6 11.0 45 85-139 347-391 (443)
343 KOG0276 Vesicle coat complex C 47.0 86 0.0019 41.8 9.6 74 101-179 651-745 (794)
344 PF10579 Rapsyn_N: Rapsyn N-te 46.3 65 0.0014 32.8 6.7 57 127-183 12-71 (80)
345 KOG2041 WD40 repeat protein [G 44.7 1.4E+02 0.003 40.4 10.9 61 84-146 795-877 (1189)
346 PF07720 TPR_3: Tetratricopept 43.8 53 0.0012 28.4 5.0 34 155-188 1-36 (36)
347 KOG1258 mRNA processing protei 43.4 5.4E+02 0.012 34.7 16.0 134 47-192 269-403 (577)
348 KOG1464 COP9 signalosome, subu 42.7 71 0.0015 38.8 7.5 52 1445-1498 123-175 (440)
349 KOG2041 WD40 repeat protein [G 41.4 1.8E+02 0.004 39.3 11.3 49 121-177 796-844 (1189)
350 COG3947 Response regulator con 41.0 73 0.0016 39.3 7.3 60 122-181 280-339 (361)
351 KOG2422 Uncharacterized conser 40.8 8.2E+02 0.018 33.2 16.7 153 32-188 283-452 (665)
352 PF07079 DUF1347: Protein of u 38.5 4.5E+02 0.0098 34.6 13.7 133 35-183 8-156 (549)
353 COG2909 MalT ATP-dependent tra 37.4 3.6E+02 0.0078 37.8 13.4 133 36-184 461-606 (894)
354 KOG0276 Vesicle coat complex C 37.3 1.1E+02 0.0023 41.0 8.3 82 86-177 667-756 (794)
355 PF10516 SHNi-TPR: SHNi-TPR; 37.2 39 0.00085 29.6 3.3 29 122-150 2-30 (38)
356 PRK09687 putative lyase; Provi 37.1 8.7E+02 0.019 29.8 17.1 78 103-188 190-267 (280)
357 PF11207 DUF2989: Protein of u 36.5 1E+02 0.0022 36.2 7.4 54 85-141 141-198 (203)
358 PF10345 Cohesin_load: Cohesin 36.2 6.9E+02 0.015 33.8 16.0 139 30-183 56-207 (608)
359 smart00386 HAT HAT (Half-A-TPR 35.6 63 0.0014 25.1 4.1 30 135-164 1-30 (33)
360 COG4455 ImpE Protein of avirul 34.8 4.1E+02 0.0089 32.1 11.7 110 94-205 10-138 (273)
361 PF04781 DUF627: Protein of un 34.3 1.4E+02 0.0029 32.3 7.2 81 92-197 3-86 (111)
362 KOG1258 mRNA processing protei 34.3 5.9E+02 0.013 34.4 14.3 108 85-195 79-190 (577)
363 PF07079 DUF1347: Protein of u 34.0 1.3E+02 0.0029 39.1 8.3 48 131-179 472-519 (549)
364 PRK15180 Vi polysaccharide bio 32.9 2.9E+02 0.0064 36.2 10.9 130 44-193 300-429 (831)
365 PRK15180 Vi polysaccharide bio 32.9 1.6E+02 0.0035 38.4 8.7 80 101-180 303-382 (831)
366 COG4455 ImpE Protein of avirul 31.8 1.5E+02 0.0033 35.5 7.7 62 129-190 9-70 (273)
367 COG3947 Response regulator con 31.6 1.6E+02 0.0035 36.5 8.1 55 91-147 285-339 (361)
368 PF04212 MIT: MIT (microtubule 31.0 61 0.0013 31.0 3.9 32 30-61 2-33 (69)
369 PF14863 Alkyl_sulf_dimr: Alky 30.1 1.2E+02 0.0026 33.7 6.4 56 119-174 68-123 (141)
370 KOG4014 Uncharacterized conser 29.8 1.3E+02 0.0028 35.1 6.7 29 168-198 181-209 (248)
371 PF06957 COPI_C: Coatomer (COP 29.3 1.2E+02 0.0025 39.3 7.0 139 32-199 203-344 (422)
372 cd02682 MIT_AAA_Arch MIT: doma 28.6 70 0.0015 32.1 3.8 32 30-61 3-34 (75)
373 KOG0292 Vesicle coat complex C 28.4 3E+02 0.0064 38.5 10.4 29 33-61 991-1019(1202)
374 KOG1839 Uncharacterized protei 27.1 1.7E+02 0.0037 42.2 8.4 140 31-185 930-1087(1236)
375 PF10255 Paf67: RNA polymerase 27.1 1.7E+02 0.0036 37.8 7.7 82 101-183 89-192 (404)
376 KOG3807 Predicted membrane pro 26.9 3.5E+02 0.0076 34.1 9.9 65 116-180 268-336 (556)
377 PF10516 SHNi-TPR: SHNi-TPR; 26.7 1.1E+02 0.0023 27.1 4.1 29 87-117 3-31 (38)
378 TIGR03504 FimV_Cterm FimV C-te 26.5 1.8E+02 0.004 26.4 5.7 25 125-149 3-27 (44)
379 cd02683 MIT_1 MIT: domain cont 25.0 81 0.0018 31.5 3.6 33 30-62 3-35 (77)
380 TIGR02561 HrpB1_HrpK type III 24.6 4.5E+02 0.0097 30.0 9.4 74 125-198 14-87 (153)
381 cd02681 MIT_calpain7_1 MIT: do 24.5 89 0.0019 31.3 3.8 33 30-62 3-35 (76)
382 PF10952 DUF2753: Protein of u 24.4 3.1E+02 0.0068 30.4 7.9 72 36-113 4-76 (140)
383 KOG0890 Protein kinase of the 23.9 3.6E+02 0.0078 41.4 10.7 94 88-185 1632-1732(2382)
384 KOG0890 Protein kinase of the 23.7 3E+02 0.0066 42.1 10.0 97 89-192 1424-1520(2382)
385 KOG4151 Myosin assembly protei 23.2 2.9E+02 0.0062 38.2 9.0 112 34-159 54-165 (748)
386 PF04190 DUF410: Protein of un 23.1 7E+02 0.015 30.2 11.6 137 34-184 11-170 (260)
387 KOG0985 Vesicle coat protein c 22.5 4E+02 0.0087 38.0 10.0 93 85-188 1220-1312(1666)
388 PF11846 DUF3366: Domain of un 21.6 1.9E+02 0.0041 32.8 6.3 49 103-152 127-175 (193)
389 cd02678 MIT_VPS4 MIT: domain c 21.3 1.2E+02 0.0025 30.0 3.9 32 31-62 4-35 (75)
390 smart00745 MIT Microtubule Int 21.3 1.2E+02 0.0025 29.6 3.9 32 30-61 5-36 (77)
391 PF10255 Paf67: RNA polymerase 21.2 3.9E+02 0.0085 34.6 9.4 68 80-149 117-192 (404)
392 PF08969 USP8_dimer: USP8 dime 20.8 1.3E+02 0.0027 31.9 4.3 84 1593-1688 30-113 (115)
393 PF06676 DUF1178: Protein of u 20.4 24 0.00051 39.4 -1.2 31 1197-1227 1-32 (148)
394 PF11817 Foie-gras_1: Foie gra 20.3 5.3E+02 0.012 30.8 9.8 77 103-180 161-243 (247)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.70 E-value=4.3e-17 Score=197.12 Aligned_cols=228 Identities=17% Similarity=0.218 Sum_probs=169.2
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCc-ccchhccCCCCC-------------chhhhHH---hHHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPL-IANAQAADGKSS-------------DGHLLQL---RFLALKNLA 92 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~-lk~a~~~d~~~s-------------~s~lLqL---~ylAykNLG 92 (1962)
+...-+.-+.|..+-.+||++||.++|.+++...| ++-++. +.+.+ +..++-+ ...||.|||
T Consensus 181 P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiaws-nLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLG 259 (966)
T KOG4626|consen 181 PDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWS-NLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLG 259 (966)
T ss_pred cchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeeh-hcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHH
Confidence 44455555666666667777777777777776543 221111 11100 0111111 347999999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 043158 93 TVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEV 172 (1962)
Q Consensus 93 ~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdye 172 (1962)
++|-+. +.+++|+.||.+|+.+.|+++.++.|+|.+|..+|..+.|+.+|++||+++|++++|+.|||++|.+.|+..
T Consensus 260 nV~ke~--~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ 337 (966)
T KOG4626|consen 260 NVYKEA--RIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVT 337 (966)
T ss_pred HHHHHH--hcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchH
Confidence 999999 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHhhhcCCCC------------CCCCCccccCccchhhHHHHhhhHHhhhhhhhhhh
Q 043158 173 ACLSVAELILRHWPSHSRALHVKNTIEETEPVP------------YAPRGIDKLEPKHVRLKFIDKRKAAAEILDEGVVC 240 (1962)
Q Consensus 173 eAL~~~~rALeLdPd~a~Al~lk~~I~~adP~~------------f~P~~~daL~p~~~~L~~i~krk~ed~~~dEAle~ 240 (1962)
+|..+|.+||.+.|+|+.++.+++.|+.+.-.. +-|....+.+.... +. + .+..+++|++.
T Consensus 338 ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~----i~--k-qqgnl~~Ai~~ 410 (966)
T KOG4626|consen 338 EAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLAS----IY--K-QQGNLDDAIMC 410 (966)
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHH----HH--H-hcccHHHHHHH
Confidence 999999999999999999999999886654222 23333222222111 11 1 11256777654
Q ss_pred hccccccccccC-hhhHHHHHHHHHHHhCC
Q 043158 241 KKLNQNIELCLA-ESSWAALADTLLDILCP 269 (1962)
Q Consensus 241 Rk~~~al~L~l~-~~SW~~LG~SLL~Ll~~ 269 (1962)
+..++.|.|. .-+..++|.++.+++.-
T Consensus 411 --YkealrI~P~fAda~~NmGnt~ke~g~v 438 (966)
T KOG4626|consen 411 --YKEALRIKPTFADALSNMGNTYKEMGDV 438 (966)
T ss_pred --HHHHHhcCchHHHHHHhcchHHHHhhhH
Confidence 5567778887 77888999999877643
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.65 E-value=2.7e-16 Score=190.41 Aligned_cols=227 Identities=18% Similarity=0.157 Sum_probs=151.1
Q ss_pred ChhhhcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCc-ccchhc--c----------CCCCCchhhhHH---hH
Q 043158 22 TKEAQARPESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPL-IANAQA--A----------DGKSSDGHLLQL---RF 85 (1962)
Q Consensus 22 TKEaQa~~eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~-lk~a~~--~----------d~~~s~s~lLqL---~y 85 (1962)
.-|+| +-.|.+|-+.|-.+..+|+.-.|+..|+++++++| +.++.- + ++...+.+++.+ ++
T Consensus 210 Ai~~q---p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A 286 (966)
T KOG4626|consen 210 AIETQ---PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHA 286 (966)
T ss_pred HHhhC---CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcch
Confidence 34556 66666666666666666666666666666666543 111110 0 000111222222 35
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 043158 86 LALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVL 165 (1962)
Q Consensus 86 lAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL 165 (1962)
.+|-|+|.+|+++ |.++-|+++|+|||+++|+.+++++|||.++...|+..+|..||.+||.+.|+|+++++|||+++
T Consensus 287 ~a~gNla~iYyeq--G~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~ 364 (966)
T KOG4626|consen 287 VAHGNLACIYYEQ--GLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIY 364 (966)
T ss_pred hhccceEEEEecc--ccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 6778888888888 78888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhhcCCCC------------CCCCCccccCccchhhHHHHhhhHHhhh
Q 043158 166 IAIGDEVACLSVAELILRHWPSHSRALHVKNTIEETEPVP------------YAPRGIDKLEPKHVRLKFIDKRKAAAEI 233 (1962)
Q Consensus 166 ~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I~~adP~~------------f~P~~~daL~p~~~~L~~i~krk~ed~~ 233 (1962)
.+.|.+++|...|++|++..|+.+.|..+++.+.+.+-.. +.|...+++...++.++.. + +
T Consensus 365 ~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~------g-~ 437 (966)
T KOG4626|consen 365 REQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEM------G-D 437 (966)
T ss_pred HHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHh------h-h
Confidence 8888888888888888888888888888887775544221 5666666665555433211 2 4
Q ss_pred hhhhhhhhccccccccccC-hhhHHHHHHH
Q 043158 234 LDEGVVCKKLNQNIELCLA-ESSWAALADT 262 (1962)
Q Consensus 234 ~dEAle~Rk~~~al~L~l~-~~SW~~LG~S 262 (1962)
+++|+.+ +.+++.++|. .....+||..
T Consensus 438 v~~A~q~--y~rAI~~nPt~AeAhsNLasi 465 (966)
T KOG4626|consen 438 VSAAIQC--YTRAIQINPTFAEAHSNLASI 465 (966)
T ss_pred HHHHHHH--HHHHHhcCcHHHHHHhhHHHH
Confidence 4555544 4555556655 3444445443
No 3
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.52 E-value=1.9e-13 Score=145.09 Aligned_cols=111 Identities=7% Similarity=-0.031 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 043158 87 ALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLI 166 (1962)
Q Consensus 87 AykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~ 166 (1962)
.+.++|.++.+. |++++|+.+|.+|+.++|.++.+|+++|.++..+|++++|+.+|++|++++|+++.++.++|.++.
T Consensus 26 ~~~~~g~~~~~~--g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 26 TVYASGYASWQE--GDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 466899999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhh
Q 043158 167 AIGDEVACLSVAELILRHWPSHSRALHVKNTIE 199 (1962)
Q Consensus 167 ~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I~ 199 (1962)
.+|++++|+.+|++|++++|+++.++.+++.+.
T Consensus 104 ~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 104 MMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 999999999999999999999999998887653
No 4
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.48 E-value=2.2e-12 Score=165.14 Aligned_cols=214 Identities=11% Similarity=0.018 Sum_probs=153.6
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 043158 32 HLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYL 111 (1962)
Q Consensus 32 eAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~ 111 (1962)
.+..++..|..+...|++++|+..|++++...| + ...+|.++|.++... |++++|+.+|.
T Consensus 330 ~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-------~-----------~~~~~~~la~~~~~~--g~~~eA~~~~~ 389 (615)
T TIGR00990 330 EAIALNLRGTFKCLKGKHLEALADLSKSIELDP-------R-----------VTQSYIKRASMNLEL--GDPDKAEEDFD 389 (615)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-------C-----------cHHHHHHHHHHHHHC--CCHHHHHHHHH
Confidence 444555666666677777777777777776533 1 236788999999998 89999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 043158 112 QAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSRA 191 (1962)
Q Consensus 112 rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~A 191 (1962)
+|++++|+++++|+++|.++..+|++++|+.+|+++++++|++..++.++|.++..+|++++|+..++++++.+|+++.+
T Consensus 390 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~ 469 (615)
T TIGR00990 390 KALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDV 469 (615)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHhhhcCCC------------CCCCCCccccCccchhhHHHHh---hhHHhhhhhhhhhhhccccccccccC-hhh
Q 043158 192 LHVKNTIEETEPV------------PYAPRGIDKLEPKHVRLKFIDK---RKAAAEILDEGVVCKKLNQNIELCLA-ESS 255 (1962)
Q Consensus 192 l~lk~~I~~adP~------------~f~P~~~daL~p~~~~L~~i~k---rk~ed~~~dEAle~Rk~~~al~L~l~-~~S 255 (1962)
+..++.+....-- .+.|...... .....++.. ......++++|... ..+++.+.|. ...
T Consensus 470 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~---~~~~~l~~~a~~~~~~~~~~~eA~~~--~~kAl~l~p~~~~a 544 (615)
T TIGR00990 470 YNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMY---MNVLPLINKALALFQWKQDFIEAENL--CEKALIIDPECDIA 544 (615)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCcccccc---ccHHHHHHHHHHHHHHhhhHHHHHHH--HHHHHhcCCCcHHH
Confidence 8777665432110 0112110000 000001111 00001245666544 3455667765 457
Q ss_pred HHHHHHHHHHHhCCC
Q 043158 256 WAALADTLLDILCPL 270 (1962)
Q Consensus 256 W~~LG~SLL~Ll~~~ 270 (1962)
|..+|..+++.+...
T Consensus 545 ~~~la~~~~~~g~~~ 559 (615)
T TIGR00990 545 VATMAQLLLQQGDVD 559 (615)
T ss_pred HHHHHHHHHHccCHH
Confidence 888999998766544
No 5
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.37 E-value=7.6e-12 Score=132.99 Aligned_cols=117 Identities=20% Similarity=0.189 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 043158 33 LTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQ 112 (1962)
Q Consensus 33 AlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~r 112 (1962)
+..++..|..+.+.|++++|...|++++..+| . .+.+|.++|.++... |++++|+.+|.+
T Consensus 24 p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P-------~-----------~~~a~~~lg~~~~~~--g~~~~A~~~y~~ 83 (144)
T PRK15359 24 PETVYASGYASWQEGDYSRAVIDFSWLVMAQP-------W-----------SWRAHIALAGTWMML--KEYTTAINFYGH 83 (144)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-------C-----------cHHHHHHHHHHHHHH--hhHHHHHHHHHH
Confidence 44578899999999999999999999998754 1 257899999999999 999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 043158 113 AVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIG 169 (1962)
Q Consensus 113 ALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LG 169 (1962)
|++++|+++.+|+++|.++..+|++++|+.+|++|++++|+++..+.++|.++..++
T Consensus 84 Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 84 ALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD 140 (144)
T ss_pred HHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998886553
No 6
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.37 E-value=1.5e-11 Score=157.57 Aligned_cols=192 Identities=11% Similarity=0.057 Sum_probs=151.0
Q ss_pred cccHHHHHHHHHH---HHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHH
Q 043158 30 ESHLTQTYHEGLL---KLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESA 106 (1962)
Q Consensus 30 eeeAlalYqkAL~---L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEA 106 (1962)
.+....+.+.+.. ....++|++|+++|++++...... + . ...+|.++|.++..+ |++++|
T Consensus 288 ~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~---~-~-----------~a~a~~~lg~~~~~~--g~~~eA 350 (615)
T TIGR00990 288 EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLG---E-K-----------EAIALNLRGTFKCLK--GKHLEA 350 (615)
T ss_pred cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCC---h-h-----------hHHHHHHHHHHHHHc--CCHHHH
Confidence 3333334444433 344589999999999999753111 1 1 246799999999999 899999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 043158 107 LRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWP 186 (1962)
Q Consensus 107 Le~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdP 186 (1962)
+.+|.+|++++|+++.+|+++|.++..+|++++|+.+|+++++.+|+++.++.++|.++..+|++++|+.+|+++++++|
T Consensus 351 ~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P 430 (615)
T TIGR00990 351 LADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP 430 (615)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhhcCCCCCCCCCccccCccchhhHHHHhhhHHhhhhhhhhhhhccccccccccC-hhhHHHHHHHHHH
Q 043158 187 SHSRALHVKNTIEETEPVPYAPRGIDKLEPKHVRLKFIDKRKAAAEILDEGVVCKKLNQNIELCLA-ESSWAALADTLLD 265 (1962)
Q Consensus 187 d~a~Al~lk~~I~~adP~~f~P~~~daL~p~~~~L~~i~krk~ed~~~dEAle~Rk~~~al~L~l~-~~SW~~LG~SLL~ 265 (1962)
++..++..++.+... .+ .+++|+.. ..+++.+.|. ...|..+|..+.+
T Consensus 431 ~~~~~~~~la~~~~~------~g-----------------------~~~eA~~~--~~~al~~~P~~~~~~~~lg~~~~~ 479 (615)
T TIGR00990 431 DFIFSHIQLGVTQYK------EG-----------------------SIASSMAT--FRRCKKNFPEAPDVYNYYGELLLD 479 (615)
T ss_pred cCHHHHHHHHHHHHH------CC-----------------------CHHHHHHH--HHHHHHhCCCChHHHHHHHHHHHH
Confidence 999888877766431 11 12333222 2333444554 6778889998886
Q ss_pred HhCC
Q 043158 266 ILCP 269 (1962)
Q Consensus 266 Ll~~ 269 (1962)
....
T Consensus 480 ~g~~ 483 (615)
T TIGR00990 480 QNKF 483 (615)
T ss_pred ccCH
Confidence 5533
No 7
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.32 E-value=3.1e-11 Score=161.32 Aligned_cols=158 Identities=16% Similarity=0.089 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhc----------cCC---CCCchhhhHH--hHHHHHHHHHHHHH
Q 043158 33 LTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQA----------ADG---KSSDGHLLQL--RFLALKNLATVFLQ 97 (1962)
Q Consensus 33 AlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~----------~d~---~~s~s~lLqL--~ylAykNLG~lLl~ 97 (1962)
...++..|..+.+.|++++|+.+|+++++..+-..... ++. .....+++++ ...+|.|+|.++.+
T Consensus 542 ~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~ 621 (987)
T PRK09782 542 NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQ 621 (987)
T ss_pred cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 34578888889999999999999999998643111000 000 0011111211 24566677777777
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 043158 98 QGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSV 177 (1962)
Q Consensus 98 ~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~ 177 (1962)
. |++++|+.+|++|++++|+++.+++++|.++...|++++|+.+|++|++++|+++.++.++|.++..+|++++|+.+
T Consensus 622 l--G~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~ 699 (987)
T PRK09782 622 R--HNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHY 699 (987)
T ss_pred C--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 7 67777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhCCCCHHHH
Q 043158 178 AELILRHWPSHSRAL 192 (1962)
Q Consensus 178 ~~rALeLdPd~a~Al 192 (1962)
+++|++++|+.+...
T Consensus 700 l~~Al~l~P~~a~i~ 714 (987)
T PRK09782 700 ARLVIDDIDNQALIT 714 (987)
T ss_pred HHHHHhcCCCCchhh
Confidence 777777777665443
No 8
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.32 E-value=3.3e-11 Score=141.95 Aligned_cols=130 Identities=13% Similarity=0.040 Sum_probs=117.0
Q ss_pred HCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 043158 45 QSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVW 124 (1962)
Q Consensus 45 qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW 124 (1962)
..++.+.++..+.++|...+..+.. ....|+++|.++... |++++|+..|.+|++++|+++.+|
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~--------------~a~~~~~~g~~~~~~--g~~~~A~~~~~~Al~l~P~~~~a~ 101 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEE--------------RAQLHYERGVLYDSL--GLRALARNDFSQALALRPDMADAY 101 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHh--------------hHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHcCCCCHHHH
Confidence 3467788999999999643211110 346799999999999 899999999999999999999999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 043158 125 NQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSR 190 (1962)
Q Consensus 125 ~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~ 190 (1962)
+++|.++..+|++++|+.+|++|++++|++..++.++|.+++..|++++|+..++++++++|+++.
T Consensus 102 ~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~ 167 (296)
T PRK11189 102 NYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY 167 (296)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 999999999999999999999999999999999999999999999999999999999999999974
No 9
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.31 E-value=6.9e-11 Score=139.25 Aligned_cols=104 Identities=15% Similarity=0.104 Sum_probs=95.1
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 043158 32 HLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYL 111 (1962)
Q Consensus 32 eAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~ 111 (1962)
.+..+|+.|..+...|++++|...|+++++..| + ...+|+++|.++... |++++|+++|.
T Consensus 63 ~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-------~-----------~~~a~~~lg~~~~~~--g~~~~A~~~~~ 122 (296)
T PRK11189 63 RAQLHYERGVLYDSLGLRALARNDFSQALALRP-------D-----------MADAYNYLGIYLTQA--GNFDAAYEAFD 122 (296)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-------C-----------CHHHHHHHHHHHHHC--CCHHHHHHHHH
Confidence 467799999999999999999999999998754 2 247899999999999 89999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH
Q 043158 112 QAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNW 155 (1962)
Q Consensus 112 rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~ 155 (1962)
+|++++|+++.+|+++|.++...|++++|+..|+++++++|+++
T Consensus 123 ~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~ 166 (296)
T PRK11189 123 SVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP 166 (296)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 99999999999999999999999999999999999999999886
No 10
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.29 E-value=5.8e-11 Score=132.83 Aligned_cols=123 Identities=15% Similarity=0.196 Sum_probs=107.8
Q ss_pred CCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 043158 47 KEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQ 126 (1962)
Q Consensus 47 GRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~n 126 (1962)
++.++++..|+++++..| + +..+|.++|.++... |++++|+.+|.+|++++|+++++|.+
T Consensus 53 ~~~~~~i~~l~~~L~~~P-------~-----------~~~~w~~Lg~~~~~~--g~~~~A~~a~~~Al~l~P~~~~~~~~ 112 (198)
T PRK10370 53 QTPEAQLQALQDKIRANP-------Q-----------NSEQWALLGEYYLWR--NDYDNALLAYRQALQLRGENAELYAA 112 (198)
T ss_pred hhHHHHHHHHHHHHHHCC-------C-----------CHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 445556666666655432 1 357899999999999 99999999999999999999999999
Q ss_pred HHHHH-HHcCC--hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 043158 127 LGTLA-CSMGL--LSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHS 189 (1962)
Q Consensus 127 LG~al-~~LGr--~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a 189 (1962)
+|.++ ...|+ +++|+..|+++++++|+++.++.+||.++..+|++++|+.+++++++++|.+.
T Consensus 113 lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 113 LATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 99985 77788 59999999999999999999999999999999999999999999999987654
No 11
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.28 E-value=2.6e-10 Score=122.85 Aligned_cols=150 Identities=21% Similarity=0.222 Sum_probs=133.1
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRC 109 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~ 109 (1962)
...+...++.|..+...|++++|.+.|+++++..+ + ...++.++|.++... |++++|+..
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p-------~-----------~~~~~~~la~~~~~~--~~~~~A~~~ 87 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDP-------D-----------DYLAYLALALYYQQL--GELEKAEDS 87 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-------c-----------cHHHHHHHHHHHHHc--CCHHHHHHH
Confidence 44567889999999999999999999999987532 1 135788899999999 899999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 043158 110 YLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCS--PNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPS 187 (1962)
Q Consensus 110 y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLd--Pd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd 187 (1962)
|.+|++++|.++.+++++|.++...|++++|+..|++++... |..+..+.++|.++...|++++|...+.++++.+|+
T Consensus 88 ~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 167 (234)
T TIGR02521 88 FRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ 167 (234)
T ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 999999999999999999999999999999999999999864 566788999999999999999999999999999999
Q ss_pred CHHHHHHHHHhh
Q 043158 188 HSRALHVKNTIE 199 (1962)
Q Consensus 188 ~a~Al~lk~~I~ 199 (1962)
++.++..++.+.
T Consensus 168 ~~~~~~~la~~~ 179 (234)
T TIGR02521 168 RPESLLELAELY 179 (234)
T ss_pred ChHHHHHHHHHH
Confidence 988887776653
No 12
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.26 E-value=3.3e-11 Score=139.74 Aligned_cols=115 Identities=17% Similarity=0.201 Sum_probs=108.3
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 043158 84 RFLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLE 163 (1962)
Q Consensus 84 ~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~ 163 (1962)
....+++-|+=++.. ++|.+|+..|.+||+++|+|+..+.|.+.+|.++|.++.|+..++.||.+||.++.+|.+||.
T Consensus 80 ~AE~LK~eGN~~m~~--~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~ 157 (304)
T KOG0553|consen 80 LAESLKNEGNKLMKN--KDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGL 157 (304)
T ss_pred HHHHHHHHHHHHHHh--hhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 357789999999998 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhh
Q 043158 164 VLIAIGDEVACLSVAELILRHWPSHSRALHVKNTIEE 200 (1962)
Q Consensus 164 aL~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I~~ 200 (1962)
++..+|++++|++.|++||+++|++...+-.+...++
T Consensus 158 A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~ 194 (304)
T KOG0553|consen 158 AYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQ 194 (304)
T ss_pred HHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHH
Confidence 9999999999999999999999999977777766544
No 13
>PRK12370 invasion protein regulator; Provisional
Probab=99.25 E-value=1.4e-10 Score=147.50 Aligned_cols=133 Identities=13% Similarity=-0.018 Sum_probs=119.3
Q ss_pred CCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 043158 47 KEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQ 126 (1962)
Q Consensus 47 GRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~n 126 (1962)
+++++|..+++++++.+| + +..+|..+|.++... |++++|+.+|++|++++|+++.+|++
T Consensus 318 ~~~~~A~~~~~~Al~ldP-------~-----------~~~a~~~lg~~~~~~--g~~~~A~~~~~~Al~l~P~~~~a~~~ 377 (553)
T PRK12370 318 NAMIKAKEHAIKATELDH-------N-----------NPQALGLLGLINTIH--SEYIVGSLLFKQANLLSPISADIKYY 377 (553)
T ss_pred hHHHHHHHHHHHHHhcCC-------C-----------CHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 458999999999998754 2 246788999999999 89999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHhh
Q 043158 127 LGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHW-PSHSRALHVKNTIE 199 (1962)
Q Consensus 127 LG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLd-Pd~a~Al~lk~~I~ 199 (1962)
+|.++..+|++++|+.+|+++++++|+++.++..++.+++..|++++|+.+++++++.. |+++.++.+++.+.
T Consensus 378 lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l 451 (553)
T PRK12370 378 YGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFL 451 (553)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHH
Confidence 99999999999999999999999999999888888888889999999999999999875 78888777776653
No 14
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.24 E-value=1.4e-10 Score=150.18 Aligned_cols=142 Identities=11% Similarity=-0.100 Sum_probs=128.9
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 043158 32 HLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYL 111 (1962)
Q Consensus 32 eAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~ 111 (1962)
++..++..|-...+.|+++||+..++++++..| + +..++.++|.++.+. +++++|+..++
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~P-------d-----------~~~a~~~~a~~L~~~--~~~eeA~~~~~ 144 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFP-------D-----------SSEAFILMLRGVKRQ--QGIEAGRAEIE 144 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC-------C-----------cHHHHHHHHHHHHHh--ccHHHHHHHHH
Confidence 467778888889999999999999999998754 3 347899999999999 89999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 043158 112 QAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSRA 191 (1962)
Q Consensus 112 rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~A 191 (1962)
++++.+|+++++.+++|.++.++|++++|..+|+++++.+|+++.++.++|.+|..+|+.++|...|++|++...+-++.
T Consensus 145 ~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 145 LYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred HHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987776665
Q ss_pred HH
Q 043158 192 LH 193 (1962)
Q Consensus 192 l~ 193 (1962)
+.
T Consensus 225 ~~ 226 (694)
T PRK15179 225 LT 226 (694)
T ss_pred HH
Confidence 43
No 15
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.23 E-value=2.1e-10 Score=153.47 Aligned_cols=167 Identities=14% Similarity=0.039 Sum_probs=132.9
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhc---------cCC---CCCchhhhHH---hHHHHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQA---------ADG---KSSDGHLLQL---RFLALKNLATV 94 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~---------~d~---~~s~s~lLqL---~ylAykNLG~l 94 (1962)
++ ....+..|..+.+.|++++|+.+|++++..++...... ++. .....+++.+ ....+.+++..
T Consensus 507 Pd-~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~ 585 (987)
T PRK09782 507 PD-AWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQ 585 (987)
T ss_pred Cc-hHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 44 33456667777899999999999999887654221110 000 0011122222 22344456666
Q ss_pred HHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 043158 95 FLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVAC 174 (1962)
Q Consensus 95 Ll~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeA 174 (1962)
+... |++++|+.+|++|++++|+ +.+|+++|.++.++|++++|+.+|+++++++|+++.++.++|.+|..+|++++|
T Consensus 586 l~~~--Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeA 662 (987)
T PRK09782 586 RYIP--GQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQS 662 (987)
T ss_pred HHhC--CCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 6667 8999999999999999996 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHhhh
Q 043158 175 LSVAELILRHWPSHSRALHVKNTIEE 200 (1962)
Q Consensus 175 L~~~~rALeLdPd~a~Al~lk~~I~~ 200 (1962)
+.+|++|++++|+++.++..++.+..
T Consensus 663 i~~l~~AL~l~P~~~~a~~nLA~al~ 688 (987)
T PRK09782 663 REMLERAHKGLPDDPALIRQLAYVNQ 688 (987)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999999999988877644
No 16
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.23 E-value=5.8e-10 Score=120.12 Aligned_cols=149 Identities=19% Similarity=0.164 Sum_probs=132.1
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRC 109 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~ 109 (1962)
+..+..++..|..+...|++++|.+.|+++++..+ . ...++.++|.++... |++++|+..
T Consensus 62 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-------~-----------~~~~~~~~~~~~~~~--g~~~~A~~~ 121 (234)
T TIGR02521 62 PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-------N-----------NGDVLNNYGTFLCQQ--GKYEQAMQQ 121 (234)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-------C-----------CHHHHHHHHHHHHHc--ccHHHHHHH
Confidence 55667778888889999999999999999998632 1 125788999999999 899999999
Q ss_pred HHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 043158 110 YLQAVEID--TKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPS 187 (1962)
Q Consensus 110 y~rALaLD--P~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd 187 (1962)
|.+++... |..+.+|+++|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|..+++++++..|.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 201 (234)
T TIGR02521 122 FEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQ 201 (234)
T ss_pred HHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999864 6678899999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CHHHHHHHHHh
Q 043158 188 HSRALHVKNTI 198 (1962)
Q Consensus 188 ~a~Al~lk~~I 198 (1962)
++..+.....+
T Consensus 202 ~~~~~~~~~~~ 212 (234)
T TIGR02521 202 TAESLWLGIRI 212 (234)
T ss_pred CHHHHHHHHHH
Confidence 87777655444
No 17
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.23 E-value=1.9e-10 Score=129.55 Aligned_cols=147 Identities=20% Similarity=0.188 Sum_probs=133.1
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 043158 32 HLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYL 111 (1962)
Q Consensus 32 eAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~ 111 (1962)
.+.+..+.|+.++++|++..|..-++++|+.+| . .|.+|.-++.+|... |+.+.|-+.|+
T Consensus 34 aa~arlqLal~YL~~gd~~~A~~nlekAL~~DP-------s-----------~~~a~~~~A~~Yq~~--Ge~~~A~e~Yr 93 (250)
T COG3063 34 AAKARLQLALGYLQQGDYAQAKKNLEKALEHDP-------S-----------YYLAHLVRAHYYQKL--GENDLADESYR 93 (250)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-------c-----------cHHHHHHHHHHHHHc--CChhhHHHHHH
Confidence 456788999999999999999999999999764 2 378999999999999 99999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 043158 112 QAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCS--PNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHS 189 (1962)
Q Consensus 112 rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLd--Pd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a 189 (1962)
+|+.++|++.++++|.|..++.+|++++|...|++|+..- |..+..+.|+|.+-.+.|+.+.|.+.++++|+++|+.+
T Consensus 94 kAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~ 173 (250)
T COG3063 94 KALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFP 173 (250)
T ss_pred HHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCC
Confidence 9999999999999999999999999999999999999743 44578899999999999999999999999999999998
Q ss_pred HHHHHHHHh
Q 043158 190 RALHVKNTI 198 (1962)
Q Consensus 190 ~Al~lk~~I 198 (1962)
.+..-++..
T Consensus 174 ~~~l~~a~~ 182 (250)
T COG3063 174 PALLELARL 182 (250)
T ss_pred hHHHHHHHH
Confidence 766555443
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.21 E-value=6.5e-10 Score=144.16 Aligned_cols=99 Identities=12% Similarity=-0.013 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 043158 85 FLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEV 164 (1962)
Q Consensus 85 ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~a 164 (1962)
..+|.++|.++.+. |++++|++.|.+|++++|+++.+|..+|.++..+|++++|+.+|++++..+|+.+.++..++ .
T Consensus 110 ~~a~~~la~~l~~~--g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~ 186 (656)
T PRK15174 110 PEDVLLVASVLLKS--KQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-S 186 (656)
T ss_pred hHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-H
Confidence 45677788888877 77888888888888888888888888888888888888888888888777777777665543 2
Q ss_pred HHHcCCHHHHHHHHHHHHHhCC
Q 043158 165 LIAIGDEVACLSVAELILRHWP 186 (1962)
Q Consensus 165 L~~LGdyeeAL~~~~rALeLdP 186 (1962)
+...|++++|+..++++++.+|
T Consensus 187 l~~~g~~~eA~~~~~~~l~~~~ 208 (656)
T PRK15174 187 FLNKSRLPEDHDLARALLPFFA 208 (656)
T ss_pred HHHcCCHHHHHHHHHHHHhcCC
Confidence 4455555555555555555543
No 19
>PRK12370 invasion protein regulator; Provisional
Probab=99.21 E-value=3.3e-10 Score=144.17 Aligned_cols=149 Identities=9% Similarity=-0.091 Sum_probs=134.0
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRC 109 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~ 109 (1962)
+.++..++..|..+...|++++|+++|+++++..| + ...+|.++|.++... |++++|+.+
T Consensus 335 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P-------~-----------~~~a~~~lg~~l~~~--G~~~eAi~~ 394 (553)
T PRK12370 335 HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSP-------I-----------SADIKYYYGWNLFMA--GQLEEALQT 394 (553)
T ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-------C-----------CHHHHHHHHHHHHHC--CCHHHHHHH
Confidence 77888888899999999999999999999998754 2 246899999999999 999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 043158 110 YLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCS-PNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSH 188 (1962)
Q Consensus 110 y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLd-Pd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~ 188 (1962)
|++|++++|.++.+++.++.++...|++++|+.++++++..+ |+++.++.++|.++..+|++++|...+++++...|++
T Consensus 395 ~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~ 474 (553)
T PRK12370 395 INECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITG 474 (553)
T ss_pred HHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchh
Confidence 999999999999998888888999999999999999999885 8899999999999999999999999999999898887
Q ss_pred HHHHHHHHHh
Q 043158 189 SRALHVKNTI 198 (1962)
Q Consensus 189 a~Al~lk~~I 198 (1962)
..++..+..+
T Consensus 475 ~~~~~~l~~~ 484 (553)
T PRK12370 475 LIAVNLLYAE 484 (553)
T ss_pred HHHHHHHHHH
Confidence 7777666544
No 20
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.20 E-value=3.2e-10 Score=116.64 Aligned_cols=111 Identities=18% Similarity=0.211 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 043158 85 FLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEV 164 (1962)
Q Consensus 85 ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~a 164 (1962)
..+..++|..+... |++++|++.|++++.++|+++.+|+++|.++..+|++++|+.+|++++..+|+++..+.++|.+
T Consensus 17 ~~~~~~~a~~~~~~--~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 94 (135)
T TIGR02552 17 LEQIYALAYNLYQQ--GRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHHc--ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 35688999999999 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 043158 165 LIAIGDEVACLSVAELILRHWPSHSRALHVKNT 197 (1962)
Q Consensus 165 L~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~ 197 (1962)
+..+|+++.|+..++++++++|++......+..
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 127 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEICGENPEYSELKER 127 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 999999999999999999999999875544443
No 21
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.17 E-value=1.6e-10 Score=144.06 Aligned_cols=167 Identities=22% Similarity=0.218 Sum_probs=132.8
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCc-ccchhc--c---------CC-CCCchhhhHH---hHHHHHHHHHHH
Q 043158 32 HLTQTYHEGLLKLQSKEYDKAQELLESVLKDPL-IANAQA--A---------DG-KSSDGHLLQL---RFLALKNLATVF 95 (1962)
Q Consensus 32 eAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~-lk~a~~--~---------d~-~~s~s~lLqL---~ylAykNLG~lL 95 (1962)
-+..|-..|..+--|++++.|+++|++++++++ +.++.- + |. ...++.++.. +|-||+.+|++|
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy 499 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVY 499 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhhe
Confidence 445666777777778999999999999999876 444321 1 00 0122333332 688888888888
Q ss_pred HHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 043158 96 LQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACL 175 (1962)
Q Consensus 96 l~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL 175 (1962)
+.+ ++++.|.-+|++|+.++|.+......+|.++.++|+.++|+..|++|+.+||.++.+.+..|.+|..+++|++|+
T Consensus 500 ~Kq--ek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal 577 (638)
T KOG1126|consen 500 LKQ--EKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEAL 577 (638)
T ss_pred ecc--chhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHH
Confidence 888 888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHhhh
Q 043158 176 SVAELILRHWPSHSRALHVKNTIEE 200 (1962)
Q Consensus 176 ~~~~rALeLdPd~a~Al~lk~~I~~ 200 (1962)
..++..-++-|+.+-++++.+.+..
T Consensus 578 ~~LEeLk~~vP~es~v~~llgki~k 602 (638)
T KOG1126|consen 578 QELEELKELVPQESSVFALLGKIYK 602 (638)
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHH
Confidence 8888888888888888888877643
No 22
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.16 E-value=3.6e-10 Score=136.80 Aligned_cols=109 Identities=12% Similarity=0.127 Sum_probs=103.2
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 043158 88 LKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIA 167 (1962)
Q Consensus 88 ykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~ 167 (1962)
+...|..++.. |++++|+++|.+|++++|+++.+|+++|.++..+|++++|+.++++|+.++|+++.++.++|.++..
T Consensus 5 l~~~a~~a~~~--~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 5 LEDKAKEAFVD--DDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 45668888888 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 043158 168 IGDEVACLSVAELILRHWPSHSRALHVKNTI 198 (1962)
Q Consensus 168 LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I 198 (1962)
+|+|++|+.+|+++++++|+++.+...+..+
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999999999999888777655
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.13 E-value=8.7e-10 Score=143.01 Aligned_cols=135 Identities=15% Similarity=0.057 Sum_probs=91.6
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHH----HHHHHHH
Q 043158 37 YHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYES----ALRCYLQ 112 (1962)
Q Consensus 37 YqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eE----ALe~y~r 112 (1962)
...+..+...|++++|+..|+++++..+ + ...++.++|.++... |++++ |+..|++
T Consensus 216 ~~l~~~l~~~g~~~eA~~~~~~al~~~p-------~-----------~~~~~~~Lg~~l~~~--G~~~eA~~~A~~~~~~ 275 (656)
T PRK15174 216 GLAVDTLCAVGKYQEAIQTGESALARGL-------D-----------GAALRRSLGLAYYQS--GRSREAKLQAAEHWRH 275 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCC-------C-----------CHHHHHHHHHHHHHc--CCchhhHHHHHHHHHH
Confidence 3446677889999999999999998754 1 124556666666666 56554 5666666
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 043158 113 AVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSRA 191 (1962)
Q Consensus 113 ALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~A 191 (1962)
|++++|+++.+|.++|.++...|++++|+..|+++++++|+++.++.++|.++..+|++++|+..|+++++.+|+++.+
T Consensus 276 Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~ 354 (656)
T PRK15174 276 ALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKW 354 (656)
T ss_pred HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHH
Confidence 6666666666666666666666666666666666666666666666666666666666666666666666666666543
No 24
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.12 E-value=2.7e-10 Score=142.00 Aligned_cols=160 Identities=18% Similarity=0.165 Sum_probs=124.7
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcCCcccch--------hc--cCCCC---CchhhhH---HhHHHHHHHHHHHHHcCC
Q 043158 37 YHEGLLKLQSKEYDKAQELLESVLKDPLIANA--------QA--ADGKS---SDGHLLQ---LRFLALKNLATVFLQQGS 100 (1962)
Q Consensus 37 YqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a--------~~--~d~~~---s~s~lLq---L~ylAykNLG~lLl~~g~ 100 (1962)
-|.|..+...++|++|+++|+.+-+..|..-- .| .+... +...+.. ....+|.-+|++|.-+
T Consensus 357 ~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQ-- 434 (638)
T KOG1126|consen 357 SQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQ-- 434 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhh--
Confidence 34566667777888888888888766542100 00 00000 0000000 0357999999999988
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043158 101 SHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAEL 180 (1962)
Q Consensus 101 Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~r 180 (1962)
++++.|+.||+||+++||+++-++..+|.=+.....++.|..||+.||.++|+|-.||+.||.++...++++.|..+|++
T Consensus 435 kdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqk 514 (638)
T KOG1126|consen 435 KDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQK 514 (638)
T ss_pred hHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHh
Q 043158 181 ILRHWPSHSRALHVKNTI 198 (1962)
Q Consensus 181 ALeLdPd~a~Al~lk~~I 198 (1962)
|++++|.+...+...+.+
T Consensus 515 A~~INP~nsvi~~~~g~~ 532 (638)
T KOG1126|consen 515 AVEINPSNSVILCHIGRI 532 (638)
T ss_pred hhcCCccchhHHhhhhHH
Confidence 999999987555444443
No 25
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=9.2e-10 Score=132.57 Aligned_cols=135 Identities=19% Similarity=0.192 Sum_probs=122.5
Q ss_pred CCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 043158 46 SKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWN 125 (1962)
Q Consensus 46 qGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~ 125 (1962)
.++.+.|+..|+++|++.| . ...+|.-.|.=+.++ .+...|+++|++|++++|.|..+||
T Consensus 343 r~eHEKAv~YFkRALkLNp-------~-----------~~~aWTLmGHEyvEm--KNt~AAi~sYRrAvdi~p~DyRAWY 402 (559)
T KOG1155|consen 343 RSEHEKAVMYFKRALKLNP-------K-----------YLSAWTLMGHEYVEM--KNTHAAIESYRRAVDINPRDYRAWY 402 (559)
T ss_pred HHhHHHHHHHHHHHHhcCc-------c-----------hhHHHHHhhHHHHHh--cccHHHHHHHHHHHhcCchhHHHHh
Confidence 3688999999999999854 1 136899999999999 8899999999999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhh
Q 043158 126 QLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSRALHVKNTIEE 200 (1962)
Q Consensus 126 nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I~~ 200 (1962)
.||+++.-++-..=|+..|++|+++.|+++..|..||.++..+++.++|+.||.+|+........++..++.+.+
T Consensus 403 GLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye 477 (559)
T KOG1155|consen 403 GLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYE 477 (559)
T ss_pred hhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998877788887777644
No 26
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=1.8e-09 Score=130.08 Aligned_cols=149 Identities=14% Similarity=0.117 Sum_probs=131.9
Q ss_pred cccHHHHHHHHHH---------------HHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHH
Q 043158 30 ESHLTQTYHEGLL---------------KLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATV 94 (1962)
Q Consensus 30 eeeAlalYqkAL~---------------L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~l 94 (1962)
.+.|...|++|+. +....+-..|+++|++|++..| . .|.||+.||++
T Consensus 346 HEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p-------~-----------DyRAWYGLGQa 407 (559)
T KOG1155|consen 346 HEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINP-------R-----------DYRAWYGLGQA 407 (559)
T ss_pred HHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCc-------h-----------hHHHHhhhhHH
Confidence 6677778888877 4566889999999999999753 1 47899999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 043158 95 FLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVAC 174 (1962)
Q Consensus 95 Ll~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeA 174 (1962)
|.-+ +-+.=|+-+|++|+++.|.|+.+|-.||.++.++++.++|+.||.+|+.+...+..++..||.++..++++.+|
T Consensus 408 Yeim--~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eA 485 (559)
T KOG1155|consen 408 YEIM--KMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEA 485 (559)
T ss_pred HHHh--cchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHH
Confidence 9999 78999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-------hCCCCHHHHHHHHHh
Q 043158 175 LSVAELILR-------HWPSHSRALHVKNTI 198 (1962)
Q Consensus 175 L~~~~rALe-------LdPd~a~Al~lk~~I 198 (1962)
..+|++-++ .+|.-.+|...++..
T Consensus 486 a~~yek~v~~~~~eg~~~~~t~ka~~fLA~~ 516 (559)
T KOG1155|consen 486 AQYYEKYVEVSELEGEIDDETIKARLFLAEY 516 (559)
T ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Confidence 999999998 455555555555554
No 27
>PLN02789 farnesyltranstransferase
Probab=99.08 E-value=9.9e-10 Score=131.45 Aligned_cols=135 Identities=14% Similarity=0.062 Sum_probs=67.0
Q ss_pred HHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCCCCH
Q 043158 43 KLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSS-HYESALRCYLQAVEIDTKDS 121 (1962)
Q Consensus 43 L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~G-r~eEALe~y~rALaLDP~Da 121 (1962)
+...++.++|+.++.++++..|- +|.+|.++|.++..+ | ++++|++++.+++..+|++.
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~------------------~ytaW~~R~~iL~~L--~~~l~eeL~~~~~~i~~npkny 106 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPG------------------NYTVWHFRRLCLEAL--DADLEEELDFAEDVAEDNPKNY 106 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCch------------------hHHHHHHHHHHHHHc--chhHHHHHHHHHHHHHHCCcch
Confidence 44567888888888888876431 234444444444444 2 34444444444444444444
Q ss_pred HHHHHHHHHHHHcCCh--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 043158 122 VVWNQLGTLACSMGLL--SISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSRALHVKNT 197 (1962)
Q Consensus 122 eaW~nLG~al~~LGr~--eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~ 197 (1962)
.+|++.|.++..+|+. .+++.+++++|+.||.+..+|...+-++..+|++++++.++.++|+.||.+..||+.+..
T Consensus 107 qaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~ 184 (320)
T PLN02789 107 QIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYF 184 (320)
T ss_pred HHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHH
Confidence 4444444444444432 334444444444444444444444444444444444444444444444444444444433
No 28
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.08 E-value=2e-09 Score=147.61 Aligned_cols=163 Identities=19% Similarity=0.116 Sum_probs=127.0
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhh-HHhHHHHHHHHHHHHHcCCCCHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLL-QLRFLALKNLATVFLQQGSSHYESALR 108 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lL-qL~ylAykNLG~lLl~~g~Gr~eEALe 108 (1962)
++.+..++..|..+.+.|++++|+..|+++++..+... . ......++ ...|....++|.++... |++++|+.
T Consensus 300 P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~----~-~~~~~~ll~~~~~~~~~~~g~~~~~~--g~~~eA~~ 372 (1157)
T PRK11447 300 PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSS----N-RDKWESLLKVNRYWLLIQQGDAALKA--NNLAQAER 372 (1157)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcc----c-hhHHHHHHHhhhHHHHHHHHHHHHHC--CCHHHHHH
Confidence 55666677777777777777777777777776533110 0 00000111 11345556789999998 89999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH------------------------
Q 043158 109 CYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEV------------------------ 164 (1962)
Q Consensus 109 ~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~a------------------------ 164 (1962)
+|++|++++|+++.+++++|.++...|++++|+.+|+++++++|++..++.+++.+
T Consensus 373 ~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~ 452 (1157)
T PRK11447 373 LYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSI 452 (1157)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887766554
Q ss_pred ------------------HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhh
Q 043158 165 ------------------LIAIGDEVACLSVAELILRHWPSHSRALHVKNTIE 199 (1962)
Q Consensus 165 ------------------L~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I~ 199 (1962)
+...|++++|+..|+++++++|+++.+++.++.+.
T Consensus 453 ~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~ 505 (1157)
T PRK11447 453 DDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDL 505 (1157)
T ss_pred HHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34579999999999999999999988887776653
No 29
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.08 E-value=3.3e-09 Score=119.39 Aligned_cols=151 Identities=16% Similarity=0.148 Sum_probs=128.8
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 043158 32 HLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYL 111 (1962)
Q Consensus 32 eAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~ 111 (1962)
.+..+|+.|..+...|++++|...|++++...|-. + ....++.++|.++... |++++|+..|.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~---~------------~~~~a~~~la~~~~~~--~~~~~A~~~~~ 94 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFS---P------------YAEQAQLDLAYAYYKS--GDYAEAIAAAD 94 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---h------------hHHHHHHHHHHHHHhc--CCHHHHHHHHH
Confidence 45678999999999999999999999999864311 0 0235789999999999 89999999999
Q ss_pred HHHHhCCCCHH---HHHHHHHHHHHc--------CChHHHHHHHHHHHhcCCCCHHHH-----------------HHHHH
Q 043158 112 QAVEIDTKDSV---VWNQLGTLACSM--------GLLSISRWAFEQGLLCSPNNWNCM-----------------EKLLE 163 (1962)
Q Consensus 112 rALaLDP~Dae---aW~nLG~al~~L--------Gr~eeAr~alErALeLdPd~~~Al-----------------~nLg~ 163 (1962)
++++.+|+++. +|+.+|.++... |+++.|+..|++++..+|++..++ ..+|.
T Consensus 95 ~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~ 174 (235)
T TIGR03302 95 RFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVAR 174 (235)
T ss_pred HHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999887 799999999987 899999999999999999997553 35678
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHhh
Q 043158 164 VLIAIGDEVACLSVAELILRHWPSH---SRALHVKNTIE 199 (1962)
Q Consensus 164 aL~~LGdyeeAL~~~~rALeLdPd~---a~Al~lk~~I~ 199 (1962)
++...|++.+|+..++++++..|+. +.+++.++.+.
T Consensus 175 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~ 213 (235)
T TIGR03302 175 FYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAY 213 (235)
T ss_pred HHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHH
Confidence 8889999999999999999997765 46777776653
No 30
>PLN02789 farnesyltranstransferase
Probab=99.07 E-value=2.4e-09 Score=128.16 Aligned_cols=100 Identities=13% Similarity=0.049 Sum_probs=88.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH--HHHHHH
Q 043158 101 SHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMG-LLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDE--VACLSV 177 (1962)
Q Consensus 101 Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LG-r~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdy--eeAL~~ 177 (1962)
++.++|+..+.+|++++|++..+|...|.++..+| .+++|+.+++++++.+|++..+|...+.++..+|+. .+++.+
T Consensus 51 e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~ 130 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEF 130 (320)
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHH
Confidence 57889999999999999999999999999999998 579999999999999999999999999999999874 678888
Q ss_pred HHHHHHhCCCCHHHHHHHHHhhh
Q 043158 178 AELILRHWPSHSRALHVKNTIEE 200 (1962)
Q Consensus 178 ~~rALeLdPd~a~Al~lk~~I~~ 200 (1962)
+.++++.+|.+..||..++.+..
T Consensus 131 ~~kal~~dpkNy~AW~~R~w~l~ 153 (320)
T PLN02789 131 TRKILSLDAKNYHAWSHRQWVLR 153 (320)
T ss_pred HHHHHHhCcccHHHHHHHHHHHH
Confidence 89999999999999988876644
No 31
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.06 E-value=2.2e-09 Score=116.27 Aligned_cols=98 Identities=12% Similarity=0.106 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 043158 86 LALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVL 165 (1962)
Q Consensus 86 lAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL 165 (1962)
...+.+|..+++. |++++|...|+-+..+||.+++.|++||.++..+|++++|+.+|.+|+.++|++|.++.++|.++
T Consensus 36 ~~lY~~A~~ly~~--G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 36 NTLYRYAMQLMEV--KEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 5678899999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhC
Q 043158 166 IAIGDEVACLSVAELILRHW 185 (1962)
Q Consensus 166 ~~LGdyeeAL~~~~rALeLd 185 (1962)
..+|+.+.|..+|+.|+..-
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh
Confidence 99999999999999999885
No 32
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.04 E-value=2.4e-09 Score=115.96 Aligned_cols=101 Identities=15% Similarity=0.085 Sum_probs=93.9
Q ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 043158 31 SHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCY 110 (1962)
Q Consensus 31 eeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y 110 (1962)
+....+|..|..+.++|++++|+..|+-+...++ . .+..|+|||.++..+ |++++|+++|
T Consensus 33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp-------~-----------~~~y~~gLG~~~Q~~--g~~~~AI~aY 92 (157)
T PRK15363 33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDA-------W-----------SFDYWFRLGECCQAQ--KHWGEAIYAY 92 (157)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-------c-----------cHHHHHHHHHHHHHH--hhHHHHHHHH
Confidence 4567899999999999999999999999988754 1 357899999999999 9999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 043158 111 LQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCS 151 (1962)
Q Consensus 111 ~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLd 151 (1962)
.+|+.++|+||.+.+++|.++..+|+.+.|+.+|+.|+..-
T Consensus 93 ~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 93 GRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999876
No 33
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.03 E-value=1e-08 Score=132.04 Aligned_cols=146 Identities=17% Similarity=0.160 Sum_probs=85.7
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRC 109 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~ 109 (1962)
+.....++..+..+...|++++|...++.+....+. ....+..+|.++... |++++|+..
T Consensus 666 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~--g~~~~A~~~ 725 (899)
T TIGR02917 666 PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK------------------AALGFELEGDLYLRQ--KDYPAAIQA 725 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC------------------ChHHHHHHHHHHHHC--CCHHHHHHH
Confidence 555666677777777778888888888777654220 013344455555555 555555555
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 043158 110 YLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHS 189 (1962)
Q Consensus 110 y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a 189 (1962)
|.+++...|++ ..++++|.++...|++++|...+++++..+|+++.++..+|.++..+|++++|+..|+++++.+|+++
T Consensus 726 ~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 804 (899)
T TIGR02917 726 YRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNA 804 (899)
T ss_pred HHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCH
Confidence 55555555555 45555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHH
Q 043158 190 RALHVKN 196 (1962)
Q Consensus 190 ~Al~lk~ 196 (1962)
.++..++
T Consensus 805 ~~~~~l~ 811 (899)
T TIGR02917 805 VVLNNLA 811 (899)
T ss_pred HHHHHHH
Confidence 5444433
No 34
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.02 E-value=5.4e-09 Score=143.36 Aligned_cols=142 Identities=21% Similarity=0.196 Sum_probs=126.7
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC
Q 043158 38 HEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQAVEID 117 (1962)
Q Consensus 38 qkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLD 117 (1962)
..|..+...|++++|+..|+++++..| + ...++.++|.++... |++++|+.+|++|++++
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P-------~-----------~~~a~~~Lg~~~~~~--g~~~eA~~~l~~Al~~~ 333 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANP-------K-----------DSEALGALGQAYSQQ--GDRARAVAQFEKALALD 333 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC-------C-----------CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhC
Confidence 458888999999999999999998643 1 236789999999999 99999999999999999
Q ss_pred CCCHH--HH------------HHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043158 118 TKDSV--VW------------NQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILR 183 (1962)
Q Consensus 118 P~Dae--aW------------~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALe 183 (1962)
|++.. .| ..+|.++...|++++|+.+|+++++++|+++.++..||.++...|++++|+.+|+++++
T Consensus 334 p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~ 413 (1157)
T PRK11447 334 PHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALR 413 (1157)
T ss_pred CCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 98753 22 35588999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHhh
Q 043158 184 HWPSHSRALHVKNTIE 199 (1962)
Q Consensus 184 LdPd~a~Al~lk~~I~ 199 (1962)
++|+++.++..+..+.
T Consensus 414 ~~p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 414 MDPGNTNAVRGLANLY 429 (1157)
T ss_pred hCCCCHHHHHHHHHHH
Confidence 9999998887776654
No 35
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.02 E-value=4.5e-09 Score=125.87 Aligned_cols=166 Identities=20% Similarity=0.149 Sum_probs=115.3
Q ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccc-hhc--c---CCCCCchhh-------h-------HHhHHHHHH
Q 043158 31 SHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIAN-AQA--A---DGKSSDGHL-------L-------QLRFLALKN 90 (1962)
Q Consensus 31 eeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~-a~~--~---d~~~s~s~l-------L-------qL~ylAykN 90 (1962)
..+...|..|+.+...|++++|+..|+++++..|... ... + ...+....+ + .....++.+
T Consensus 33 ~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 112 (389)
T PRK11788 33 NRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQE 112 (389)
T ss_pred hhccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 3445566667777677777777777777776543110 000 0 000000000 0 012356778
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHH-----HHHHHHHHH
Q 043158 91 LATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWN-----CMEKLLEVL 165 (1962)
Q Consensus 91 LG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~-----Al~nLg~aL 165 (1962)
+|.++... |++++|+..|.++++.+|.+..++..+|.++...|++++|+..|++++..+|.+.. .+.++|.++
T Consensus 113 La~~~~~~--g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 190 (389)
T PRK11788 113 LGQDYLKA--GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQA 190 (389)
T ss_pred HHHHHHHC--CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence 88888888 78888888888888888888888888888888888888888888888888876533 456788888
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 043158 166 IAIGDEVACLSVAELILRHWPSHSRALHVKNTI 198 (1962)
Q Consensus 166 ~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I 198 (1962)
...|++++|+.+++++++.+|++..++..++.+
T Consensus 191 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 223 (389)
T PRK11788 191 LARGDLDAARALLKKALAADPQCVRASILLGDL 223 (389)
T ss_pred HhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHH
Confidence 888888888888888888888887777776555
No 36
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.02 E-value=1.8e-08 Score=129.72 Aligned_cols=233 Identities=14% Similarity=0.111 Sum_probs=162.1
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccc-hhc--c---CCCCCchh-------hhHH---hHHHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIAN-AQA--A---DGKSSDGH-------LLQL---RFLALKNLAT 93 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~-a~~--~---d~~~s~s~-------lLqL---~ylAykNLG~ 93 (1962)
+.....++..|..+...|++++|.+.|+++++..+... ... + ...+.... ++.. ....+..+|.
T Consensus 496 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 575 (899)
T TIGR02917 496 PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQ 575 (899)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHH
Confidence 66778888999999999999999999999987543111 000 0 00000111 1111 2456788999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 043158 94 VFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVA 173 (1962)
Q Consensus 94 lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyee 173 (1962)
++... |++++|+..|++++...|.++.+|+.+|.++...|++++|+.+|+++++.+|+++.++..+|.++...|++++
T Consensus 576 ~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 653 (899)
T TIGR02917 576 YYLGK--GQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAK 653 (899)
T ss_pred HHHHC--CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHH
Confidence 99998 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHhhhcCCCCCCC-----CCccccCccchhhHHHHhh-hHHhhhhhhhhhhhcccccc
Q 043158 174 CLSVAELILRHWPSHSRALHVKNTIEETEPVPYAP-----RGIDKLEPKHVRLKFIDKR-KAAAEILDEGVVCKKLNQNI 247 (1962)
Q Consensus 174 AL~~~~rALeLdPd~a~Al~lk~~I~~adP~~f~P-----~~~daL~p~~~~L~~i~kr-k~ed~~~dEAle~Rk~~~al 247 (1962)
|+..++++++.+|++..++..+..+....--. .. .......|.........+. .....++++|+.. +.+.+
T Consensus 654 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~--~~~~~ 730 (899)
T TIGR02917 654 AITSLKRALELKPDNTEAQIGLAQLLLAAKRT-ESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQA--YRKAL 730 (899)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHH--HHHHH
Confidence 99999999999999988887776553311000 00 0000001111111111111 1011145666544 45556
Q ss_pred ccccChhhHHHHHHHHHHHh
Q 043158 248 ELCLAESSWAALADTLLDIL 267 (1962)
Q Consensus 248 ~L~l~~~SW~~LG~SLL~Ll 267 (1962)
...+....|..+|..+...+
T Consensus 731 ~~~~~~~~~~~l~~~~~~~g 750 (899)
T TIGR02917 731 KRAPSSQNAIKLHRALLASG 750 (899)
T ss_pred hhCCCchHHHHHHHHHHHCC
Confidence 66666777888887776444
No 37
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.02 E-value=3.1e-09 Score=119.08 Aligned_cols=100 Identities=17% Similarity=0.126 Sum_probs=94.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHcCC--HHHHHHH
Q 043158 101 SHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVL-IAIGD--EVACLSV 177 (1962)
Q Consensus 101 Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL-~~LGd--yeeAL~~ 177 (1962)
++.++++..|+++++.+|+|+++|+.||.++..+|++++|+.+|++|++++|+++.++.++|.++ ...|+ +++|...
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~ 132 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREM 132 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999986 67788 5999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHhhh
Q 043158 178 AELILRHWPSHSRALHVKNTIEE 200 (1962)
Q Consensus 178 ~~rALeLdPd~a~Al~lk~~I~~ 200 (1962)
++++++++|+++.++.+++....
T Consensus 133 l~~al~~dP~~~~al~~LA~~~~ 155 (198)
T PRK10370 133 IDKALALDANEVTALMLLASDAF 155 (198)
T ss_pred HHHHHHhCCCChhHHHHHHHHHH
Confidence 99999999999999999987643
No 38
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.02 E-value=2e-09 Score=125.23 Aligned_cols=122 Identities=18% Similarity=0.206 Sum_probs=110.9
Q ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 043158 31 SHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCY 110 (1962)
Q Consensus 31 eeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y 110 (1962)
+.|..+=.+|-.+.+.++|.+|+..|.+++++.| . +.-.|.|++.+|.++ |.++.|+...
T Consensus 79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P-------~-----------nAVyycNRAAAy~~L--g~~~~AVkDc 138 (304)
T KOG0553|consen 79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDP-------T-----------NAVYYCNRAAAYSKL--GEYEDAVKDC 138 (304)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-------C-----------cchHHHHHHHHHHHh--cchHHHHHHH
Confidence 4567888899999999999999999999999754 1 135677999999999 8999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 043158 111 LQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEV 172 (1962)
Q Consensus 111 ~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdye 172 (1962)
+.||.+||....+|.+||.++..+|++.+|+.+|.+||+++|++...+.+|..+-..++...
T Consensus 139 e~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 139 ESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999988877776655
No 39
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.01 E-value=4.2e-09 Score=136.80 Aligned_cols=112 Identities=10% Similarity=-0.075 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 043158 85 FLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEV 164 (1962)
Q Consensus 85 ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~a 164 (1962)
..++.+||.+..+. |++++|+..++++++++|++..++.++|.++.+++++++|+..+++++..+|+++.++..+|.+
T Consensus 86 ~~~~~~La~i~~~~--g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~ 163 (694)
T PRK15179 86 ELFQVLVARALEAA--HRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKS 163 (694)
T ss_pred HHHHHHHHHHHHHc--CCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 57999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 043158 165 LIAIGDEVACLSVAELILRHWPSHSRALHVKNTI 198 (1962)
Q Consensus 165 L~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I 198 (1962)
|.++|+|++|..+|+++++.+|+++.++..++..
T Consensus 164 l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~ 197 (694)
T PRK15179 164 WDEIGQSEQADACFERLSRQHPEFENGYVGWAQS 197 (694)
T ss_pred HHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 9999999999999999999999999999888765
No 40
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.01 E-value=3.5e-09 Score=128.33 Aligned_cols=115 Identities=13% Similarity=0.130 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 043158 34 TQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQA 113 (1962)
Q Consensus 34 lalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rA 113 (1962)
..+..+|..+...|+|++|+++|+++++..+ + ...+|.++|.++... |++++|+..+.+|
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P-------~-----------~~~a~~~~a~~~~~~--g~~~eAl~~~~~A 62 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDP-------N-----------NAELYADRAQANIKL--GNFTEAVADANKA 62 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------C-----------CHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Confidence 4578889999999999999999999998643 1 246899999999999 9999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 043158 114 VEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAI 168 (1962)
Q Consensus 114 LaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~L 168 (1962)
+.++|+++.+|+++|.++..+|++++|+.+|++|++++|+++.+...++.+...+
T Consensus 63 l~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 63 IELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998888776666
No 41
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.00 E-value=6.5e-09 Score=132.89 Aligned_cols=135 Identities=22% Similarity=0.388 Sum_probs=128.6
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 043158 32 HLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYL 111 (1962)
Q Consensus 32 eAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~ 111 (1962)
++.+++..|..++..|++++|.+++.++++.+| . ++.+|+-||.++.++ |+.++|+.++.
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp-------~-----------~~~ay~tL~~IyEqr--Gd~eK~l~~~l 197 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDP-------R-----------NPIAYYTLGEIYEQR--GDIEKALNFWL 197 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCc-------c-----------chhhHHHHHHHHHHc--ccHHHHHHHHH
Confidence 567899999999999999999999999998643 1 357899999999999 99999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 043158 112 QAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWP 186 (1962)
Q Consensus 112 rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdP 186 (1962)
.|..++|.|.+.|..+|....++|.++.|+.||.+||..+|.+++...+.+.++..+|++..|+..|.+++.+.|
T Consensus 198 lAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 198 LAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred HHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998
No 42
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.97 E-value=6.5e-09 Score=94.30 Aligned_cols=99 Identities=23% Similarity=0.320 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 043158 87 ALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLI 166 (1962)
Q Consensus 87 AykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~ 166 (1962)
++.++|..+... |++++|+..|.++++..|.++.+|+.+|.++...|++++|+.+|++++...|.+..++..+|.++.
T Consensus 2 ~~~~~a~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKL--GDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHH--hcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence 578999999999 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCC
Q 043158 167 AIGDEVACLSVAELILRHWPS 187 (1962)
Q Consensus 167 ~LGdyeeAL~~~~rALeLdPd 187 (1962)
..|+++.|...+.++++.+|+
T Consensus 80 ~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 80 KLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHHhHHHHHHHHHHHHccCCC
Confidence 999999999999999998874
No 43
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.95 E-value=1.2e-08 Score=115.41 Aligned_cols=149 Identities=17% Similarity=0.079 Sum_probs=131.4
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRC 109 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~ 109 (1962)
+....++.-.|..+++.|..+-|.+.|++++++.| +. -..++|.|.+|+.+ |++++|...
T Consensus 66 Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-------~~-----------GdVLNNYG~FLC~q--g~~~eA~q~ 125 (250)
T COG3063 66 PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP-------NN-----------GDVLNNYGAFLCAQ--GRPEEAMQQ 125 (250)
T ss_pred cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-------Cc-----------cchhhhhhHHHHhC--CChHHHHHH
Confidence 55667788889999999999999999999999754 21 26799999999999 899999999
Q ss_pred HHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 043158 110 YLQAVEI--DTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPS 187 (1962)
Q Consensus 110 y~rALaL--DP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd 187 (1962)
|++|++. .|.-+..|.|+|.|..+.|+++.|...|+++|++||+.+++...++...+..|+|..|..++++....-+-
T Consensus 126 F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~ 205 (250)
T COG3063 126 FERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGA 205 (250)
T ss_pred HHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccc
Confidence 9999985 56678999999999999999999999999999999999999999999999999999999999988887776
Q ss_pred CHHHHHHHHHh
Q 043158 188 HSRALHVKNTI 198 (1962)
Q Consensus 188 ~a~Al~lk~~I 198 (1962)
.+..+.+...|
T Consensus 206 ~A~sL~L~iri 216 (250)
T COG3063 206 QAESLLLGIRI 216 (250)
T ss_pred cHHHHHHHHHH
Confidence 56555444444
No 44
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.95 E-value=2.2e-08 Score=132.16 Aligned_cols=147 Identities=11% Similarity=0.000 Sum_probs=130.4
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 043158 32 HLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYL 111 (1962)
Q Consensus 32 eAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~ 111 (1962)
....+..-...+.-+|++++|+++|+++....+ . ...++.++|.++... |++++|++.|+
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~-------~-----------~a~~~~~lA~~~~~~--g~~~~A~~~~~ 73 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHMQ-------L-----------PARGYAAVAVAYRNL--KQWQNSLTLWQ 73 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-------C-----------CHHHHHHHHHHHHHc--CCHHHHHHHHH
Confidence 344555556666788999999999999986322 0 135689999999999 89999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 043158 112 QAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSRA 191 (1962)
Q Consensus 112 rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~A 191 (1962)
++++++|.+++++..+|.++...|++++|+..++++++.+|+++. +..+|.++...|++++|+..++++++++|+++.+
T Consensus 74 ~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~ 152 (765)
T PRK10049 74 KALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQY 152 (765)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 999999999999999999999999999999999999999999999 9999999999999999999999999999999988
Q ss_pred HHHHHHhh
Q 043158 192 LHVKNTIE 199 (1962)
Q Consensus 192 l~lk~~I~ 199 (1962)
+..++.+.
T Consensus 153 ~~~la~~l 160 (765)
T PRK10049 153 PTEYVQAL 160 (765)
T ss_pred HHHHHHHH
Confidence 87776653
No 45
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.95 E-value=4.1e-09 Score=130.10 Aligned_cols=102 Identities=15% Similarity=0.201 Sum_probs=97.9
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 043158 84 RFLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLE 163 (1962)
Q Consensus 84 ~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~ 163 (1962)
.+..+.-||.+|.-. |+|+.|++||+.||..+|+|..+|++||..+..-.+..+|+.+|.+||++.|++..+++|||.
T Consensus 429 DpdvQ~~LGVLy~ls--~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgI 506 (579)
T KOG1125|consen 429 DPDVQSGLGVLYNLS--GEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGI 506 (579)
T ss_pred ChhHHhhhHHHHhcc--hHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhh
Confidence 357788899999988 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCC
Q 043158 164 VLIAIGDEVACLSVAELILRHWPS 187 (1962)
Q Consensus 164 aL~~LGdyeeAL~~~~rALeLdPd 187 (1962)
.+.-+|.|.+|+.++-.||.+.+.
T Consensus 507 S~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 507 SCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred hhhhhhhHHHHHHHHHHHHHhhhc
Confidence 999999999999999999998765
No 46
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.94 E-value=3.1e-08 Score=118.76 Aligned_cols=155 Identities=21% Similarity=0.170 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhc---c---CCCCCc-------hhhhHH--------hHHHHHHHH
Q 043158 34 TQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQA---A---DGKSSD-------GHLLQL--------RFLALKNLA 92 (1962)
Q Consensus 34 lalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~---~---d~~~s~-------s~lLqL--------~ylAykNLG 92 (1962)
..++..|..+.+.|++++|...|+++++..+...... + ...+.. ..+... ....+.++|
T Consensus 108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la 187 (389)
T PRK11788 108 LALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELA 187 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 4567788888999999999999999987543110000 0 000000 000000 112355677
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCH
Q 043158 93 TVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNN-WNCMEKLLEVLIAIGDE 171 (1962)
Q Consensus 93 ~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~-~~Al~nLg~aL~~LGdy 171 (1962)
.++... |++++|+..|.++++.+|++..+++.+|.++...|++++|+..|++++..+|++ ..++..++.++...|++
T Consensus 188 ~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~ 265 (389)
T PRK11788 188 QQALAR--GDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDE 265 (389)
T ss_pred HHHHhC--CCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCH
Confidence 777776 677777777777777777777777777777777777777777777777777765 34566777777777777
Q ss_pred HHHHHHHHHHHHhCCCCHH
Q 043158 172 VACLSVAELILRHWPSHSR 190 (1962)
Q Consensus 172 eeAL~~~~rALeLdPd~a~ 190 (1962)
++|+..++++++.+|+...
T Consensus 266 ~~A~~~l~~~~~~~p~~~~ 284 (389)
T PRK11788 266 AEGLEFLRRALEEYPGADL 284 (389)
T ss_pred HHHHHHHHHHHHhCCCchH
Confidence 7777777777777776543
No 47
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.93 E-value=5.8e-09 Score=128.81 Aligned_cols=163 Identities=21% Similarity=0.208 Sum_probs=125.7
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCccc-chhc--c----CC--C----CCchhhhHH---hHHHHHHHHHHHHHcC
Q 043158 36 TYHEGLLKLQSKEYDKAQELLESVLKDPLIA-NAQA--A----DG--K----SSDGHLLQL---RFLALKNLATVFLQQG 99 (1962)
Q Consensus 36 lYqkAL~L~qqGRfeEA~eaY~raLa~p~lk-~a~~--~----d~--~----~s~s~lLqL---~ylAykNLG~lLl~~g 99 (1962)
-|..|..+++.|.+.+|.-+|+++++-+|-+ +++. + .. . ....+.+.| +-.++.+||..|...|
T Consensus 288 Pf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 288 PFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEG 367 (579)
T ss_pred hHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence 4678999999999999999999999755422 2221 0 00 0 011111222 2233344443333211
Q ss_pred C---------------------------------------CCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCChH
Q 043158 100 S---------------------------------------SHYESALRCYLQAVEIDT--KDSVVWNQLGTLACSMGLLS 138 (1962)
Q Consensus 100 ~---------------------------------------Gr~eEALe~y~rALaLDP--~DaeaW~nLG~al~~LGr~e 138 (1962)
. ..+..-.+.|.+|....| .|+++...||.+|.-.|.|+
T Consensus 368 ~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred hHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 0 125677888999999999 79999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 043158 139 ISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSRALHVKNTI 198 (1962)
Q Consensus 139 eAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I 198 (1962)
.|+.||+.||..+|++...|.+||..|.--.+.++|+.+|+|||++.|++.+++++++.-
T Consensus 448 raiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS 507 (579)
T KOG1125|consen 448 RAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGIS 507 (579)
T ss_pred HHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhh
Confidence 999999999999999999999999999999999999999999999999999999888663
No 48
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.92 E-value=2.3e-08 Score=99.46 Aligned_cols=106 Identities=19% Similarity=0.204 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHHHH
Q 043158 86 LALKNLATVFLQQGSSHYESALRCYLQAVEIDTKD---SVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNN---WNCME 159 (1962)
Q Consensus 86 lAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~D---aeaW~nLG~al~~LGr~eeAr~alErALeLdPd~---~~Al~ 159 (1962)
.+++++|..+... |++++|+..|.+++...|++ +.+++.+|.++...|++++|+..|++++..+|++ +.++.
T Consensus 3 ~~~~~~~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 80 (119)
T TIGR02795 3 EAYYDAALLVLKA--GDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALL 80 (119)
T ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHH
Confidence 4688999999999 89999999999999999987 6899999999999999999999999999999986 67899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 043158 160 KLLEVLIAIGDEVACLSVAELILRHWPSHSRALH 193 (1962)
Q Consensus 160 nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~Al~ 193 (1962)
++|.++..+|++++|+.+++++++..|++..+.-
T Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 81 KLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 9999999999999999999999999999876543
No 49
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.90 E-value=1e-08 Score=118.94 Aligned_cols=112 Identities=24% Similarity=0.239 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 043158 85 FLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEV 164 (1962)
Q Consensus 85 ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~a 164 (1962)
...|..+|.++.+. |+.++|+.+|++||.++|+|++++..++.++...|++++|+.+++......|+++..+..+|.+
T Consensus 146 ~~~~~~~a~~~~~~--G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~ 223 (280)
T PF13429_consen 146 ARFWLALAEIYEQL--GDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAA 223 (280)
T ss_dssp HHHHHHHHHHHHHC--CHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 46788999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 043158 165 LIAIGDEVACLSVAELILRHWPSHSRALHVKNTI 198 (1962)
Q Consensus 165 L~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I 198 (1962)
+..+|++++|+.+++++++.+|+++..+...+.+
T Consensus 224 ~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~ 257 (280)
T PF13429_consen 224 YLQLGRYEEALEYLEKALKLNPDDPLWLLAYADA 257 (280)
T ss_dssp HHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHH
T ss_pred hccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999888777665
No 50
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.89 E-value=3e-09 Score=123.69 Aligned_cols=157 Identities=18% Similarity=0.219 Sum_probs=124.0
Q ss_pred HHHHHHHCCCHHHHHHHHHHHhcCCccc-chhc--c-CC--C-------CCchhhhHH---hHHHHHHHHHHHHHcCCCC
Q 043158 39 EGLLKLQSKEYDKAQELLESVLKDPLIA-NAQA--A-DG--K-------SSDGHLLQL---RFLALKNLATVFLQQGSSH 102 (1962)
Q Consensus 39 kAL~L~qqGRfeEA~eaY~raLa~p~lk-~a~~--~-d~--~-------~s~s~lLqL---~ylAykNLG~lLl~~g~Gr 102 (1962)
.|-.+...+++++|.++|+.+++.++.. ++.. + .+ + -.+++.+++ ....+.|+|.+.+-. ++
T Consensus 296 ~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~ya--qQ 373 (478)
T KOG1129|consen 296 QARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYA--QQ 373 (478)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhh--cc
Confidence 3334556699999999999999876432 1111 0 00 0 012333443 346788999999887 88
Q ss_pred HHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 043158 103 YESALRCYLQAVEIDT---KDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAE 179 (1962)
Q Consensus 103 ~eEALe~y~rALaLDP---~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~ 179 (1962)
++-++.+|+||+.... .-+++|||||.++...|++..|..||+-||.-||+|.+++.|||.+-.+.|+.++|...+.
T Consensus 374 ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~ 453 (478)
T KOG1129|consen 374 IDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLN 453 (478)
T ss_pred hhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHH
Confidence 9999999999998754 3479999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHH
Q 043158 180 LILRHWPSHSRALHVKNT 197 (1962)
Q Consensus 180 rALeLdPd~a~Al~lk~~ 197 (1962)
.|-...|+-.+..+++..
T Consensus 454 ~A~s~~P~m~E~~~Nl~~ 471 (478)
T KOG1129|consen 454 AAKSVMPDMAEVTTNLQF 471 (478)
T ss_pred HhhhhCccccccccceeE
Confidence 999999987766555543
No 51
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.87 E-value=6.1e-08 Score=128.10 Aligned_cols=111 Identities=7% Similarity=-0.034 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 043158 86 LALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVL 165 (1962)
Q Consensus 86 lAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL 165 (1962)
.++..+|.++... |++++|++.|++++...|+++.+|.++|.++...|++++|+..|++|++++|+++.++..+|.++
T Consensus 360 ~a~~~~a~~l~~~--g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~a 437 (765)
T PRK10049 360 QGQSLLSQVAKYS--NDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTA 437 (765)
T ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence 5678999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 043158 166 IAIGDEVACLSVAELILRHWPSHSRALHVKNTI 198 (1962)
Q Consensus 166 ~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I 198 (1962)
..+|++++|...++++++.+|+++.+..+....
T Consensus 438 l~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 438 LDLQEWRQMDVLTDDVVAREPQDPGVQRLARAR 470 (765)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999999999999999888776555
No 52
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.84 E-value=7e-09 Score=120.35 Aligned_cols=135 Identities=17% Similarity=0.134 Sum_probs=99.7
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRC 109 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~ 109 (1962)
+.++..++..|..+.+.|+.++|++.|+++++..| + +..+..+++.++.+. |+.++|.+.
T Consensus 143 ~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P-------~-----------~~~~~~~l~~~li~~--~~~~~~~~~ 202 (280)
T PF13429_consen 143 PDSARFWLALAEIYEQLGDPDKALRDYRKALELDP-------D-----------DPDARNALAWLLIDM--GDYDEAREA 202 (280)
T ss_dssp -T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-T-------T------------HHHHHHHHHHHCTT--CHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-------C-----------CHHHHHHHHHHHHHC--CChHHHHHH
Confidence 34667778888888999999999999999998643 2 135677888899888 899999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 043158 110 YLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRH 184 (1962)
Q Consensus 110 y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeL 184 (1962)
+.+.....|+|+.+|..+|.++..+|++++|+..|++++..+|+++..+.++|.+|...|+.++|..+++++++.
T Consensus 203 l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 203 LKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred HHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999888754
No 53
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.84 E-value=5.5e-08 Score=100.19 Aligned_cols=109 Identities=18% Similarity=0.149 Sum_probs=99.9
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRC 109 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~ 109 (1962)
++.+...+..|..+.+.|++++|...|++++...+ + ...+|.++|.++... |++++|+..
T Consensus 14 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-------~-----------~~~~~~~la~~~~~~--~~~~~A~~~ 73 (135)
T TIGR02552 14 SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDP-------Y-----------NSRYWLGLAACCQML--KEYEEAIDA 73 (135)
T ss_pred hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-------C-----------cHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 67778899999999999999999999999988643 1 236899999999999 899999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHH
Q 043158 110 YLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCM 158 (1962)
Q Consensus 110 y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al 158 (1962)
|.+++.++|+++.+|+++|.++...|+++.|+..|+++++++|++....
T Consensus 74 ~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 74 YALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 9999999999999999999999999999999999999999999987754
No 54
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.80 E-value=8.7e-08 Score=109.60 Aligned_cols=137 Identities=23% Similarity=0.251 Sum_probs=117.1
Q ss_pred HHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC
Q 043158 39 EGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQAVEIDT 118 (1962)
Q Consensus 39 kAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP 118 (1962)
+|+.+...|++++|+++|+.+|+.+|. +...|+---.++..+ |+--+|++.+-.-++.-+
T Consensus 92 kam~lEa~~~~~~A~e~y~~lL~ddpt------------------~~v~~KRKlAilka~--GK~l~aIk~ln~YL~~F~ 151 (289)
T KOG3060|consen 92 KAMLLEATGNYKEAIEYYESLLEDDPT------------------DTVIRKRKLAILKAQ--GKNLEAIKELNEYLDKFM 151 (289)
T ss_pred HHHHHHHhhchhhHHHHHHHHhccCcc------------------hhHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHhc
Confidence 577778889999999999999986531 224455444444555 778899999999999999
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHH
Q 043158 119 KDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIG---DEVACLSVAELILRHWPSHSRALHVK 195 (1962)
Q Consensus 119 ~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LG---dyeeAL~~~~rALeLdPd~a~Al~lk 195 (1962)
.|+++|.-++.+|...|+|+.|..|||+.+-++|-++..+.++|.+++.+| ++..|..+|.+|+++.|.+..+++-.
T Consensus 152 ~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 152 NDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGI 231 (289)
T ss_pred CcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999886 47788999999999999888777654
No 55
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.80 E-value=7.7e-08 Score=104.73 Aligned_cols=103 Identities=15% Similarity=0.160 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHH
Q 043158 85 FLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKD---SVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKL 161 (1962)
Q Consensus 85 ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~D---aeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nL 161 (1962)
..+++++|..+... |++++|+.+|++|+.+.|+. +.+|+++|.++..+|++++|+.+|++++..+|+++.++.++
T Consensus 35 a~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 112 (172)
T PRK02603 35 AFVYYRDGMSAQAD--GEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 56889999999999 99999999999999988764 57999999999999999999999999999999999999999
Q ss_pred HHHHHHcCC--------------HHHHHHHHHHHHHhCCCCH
Q 043158 162 LEVLIAIGD--------------EVACLSVAELILRHWPSHS 189 (1962)
Q Consensus 162 g~aL~~LGd--------------yeeAL~~~~rALeLdPd~a 189 (1962)
|.++..+|+ +.+|+.+++++++++|++.
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence 999999888 6788888888999998874
No 56
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.79 E-value=1.4e-07 Score=108.54 Aligned_cols=112 Identities=19% Similarity=0.193 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 043158 87 ALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLI 166 (1962)
Q Consensus 87 AykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~ 166 (1962)
.++-+|..+... |++.+|+..+++|+.++|+|.++|..+|.+|.++|++++|+..|.+|+++.|+.+.+..|+|..+.
T Consensus 102 ll~~~gk~~~~~--g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~ 179 (257)
T COG5010 102 LLAAQGKNQIRN--GNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLL 179 (257)
T ss_pred HHHHHHHHHHHh--cchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHH
Confidence 344488888888 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhh
Q 043158 167 AIGDEVACLSVAELILRHWPSHSRALHVKNTIEE 200 (1962)
Q Consensus 167 ~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I~~ 200 (1962)
--||++.|...+.++...-+.+....++++..-.
T Consensus 180 L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~ 213 (257)
T COG5010 180 LRGDLEDAETLLLPAYLSPAADSRVRQNLALVVG 213 (257)
T ss_pred HcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHh
Confidence 9999999999999999888878888888777644
No 57
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.79 E-value=7.4e-08 Score=104.25 Aligned_cols=104 Identities=14% Similarity=0.137 Sum_probs=91.4
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHH
Q 043158 84 RFLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKD---SVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEK 160 (1962)
Q Consensus 84 ~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~D---aeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~n 160 (1962)
...+|.++|.++... |++++|+.+|.+|+.+.|+. +.+|+++|.++...|++++|+.+|++|+.++|.+..++.+
T Consensus 34 ~a~~~~~~g~~~~~~--g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~ 111 (168)
T CHL00033 34 EAFTYYRDGMSAQSE--GEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHH
Confidence 357899999999999 89999999999999998763 4699999999999999999999999999999999999999
Q ss_pred HHHHHH-------HcCCHH-------HHHHHHHHHHHhCCCCH
Q 043158 161 LLEVLI-------AIGDEV-------ACLSVAELILRHWPSHS 189 (1962)
Q Consensus 161 Lg~aL~-------~LGdye-------eAL~~~~rALeLdPd~a 189 (1962)
+|.++. .+|++. +|+.++++++..+|++.
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 999998 777876 55666667777787653
No 58
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.78 E-value=1.6e-08 Score=93.50 Aligned_cols=65 Identities=28% Similarity=0.450 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCC
Q 043158 86 LALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMG-LLSISRWAFEQGLLCSP 152 (1962)
Q Consensus 86 lAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LG-r~eeAr~alErALeLdP 152 (1962)
.+|.++|..+... |++++|+.+|.+|++++|+++.+|+++|.++..+| ++++|+.+|++|++++|
T Consensus 4 ~~~~~~g~~~~~~--~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 4 EAWYNLGQIYFQQ--GDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHT--THHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4566666666666 66666666666666666666666666666666666 56666666666666665
No 59
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.78 E-value=1.8e-08 Score=93.03 Aligned_cols=68 Identities=22% Similarity=0.273 Sum_probs=66.1
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 043158 119 KDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIG-DEVACLSVAELILRHWP 186 (1962)
Q Consensus 119 ~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LG-dyeeAL~~~~rALeLdP 186 (1962)
.++.+|+++|.++...|++++|+.+|++|++++|+++.++.++|.++..+| ++.+|+..++++++++|
T Consensus 1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 368999999999999999999999999999999999999999999999999 79999999999999998
No 60
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=7.6e-08 Score=118.50 Aligned_cols=160 Identities=13% Similarity=0.141 Sum_probs=126.8
Q ss_pred HHHHHHHCCCHHHHHHHHHHHhcCCcccchhcc--CCC---CCchhhhHH---hHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 043158 39 EGLLKLQSKEYDKAQELLESVLKDPLIANAQAA--DGK---SSDGHLLQL---RFLALKNLATVFLQQGSSHYESALRCY 110 (1962)
Q Consensus 39 kAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~--d~~---~s~s~lLqL---~ylAykNLG~lLl~~g~Gr~eEALe~y 110 (1962)
.|-.+...++++.|+..|+++|....-.+.... ... ........+ ....-++-|+-++.. |+|.+|+.+|
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~--gdy~~Av~~Y 381 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKK--GDYPEAVKHY 381 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhc--cCHHHHHHHH
Confidence 455667779999999999998863210000000 000 000000000 134566779999999 9999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 043158 111 LQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSR 190 (1962)
Q Consensus 111 ~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~ 190 (1962)
.+|+..+|+|+.++.|.|.|+..+|.+..|+...+.++++||++..++.+.|.++..+.+|+.|+.+|..++++||+...
T Consensus 382 teAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e 461 (539)
T KOG0548|consen 382 TEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAE 461 (539)
T ss_pred HHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHhhh
Q 043158 191 ALHVKNTIEE 200 (1962)
Q Consensus 191 Al~lk~~I~~ 200 (1962)
+.-......+
T Consensus 462 ~~~~~~rc~~ 471 (539)
T KOG0548|consen 462 AIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHH
Confidence 7766655544
No 61
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=1e-07 Score=115.98 Aligned_cols=146 Identities=12% Similarity=0.119 Sum_probs=93.7
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 043158 32 HLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYL 111 (1962)
Q Consensus 32 eAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~ 111 (1962)
.|.++...|.-+.-.|+.-+|.+-+++++++.+-. ...|.-+|.+|.+. .+.++-...|.
T Consensus 325 ~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~------------------~~lyI~~a~~y~d~--~~~~~~~~~F~ 384 (606)
T KOG0547|consen 325 MAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAF------------------NSLYIKRAAAYADE--NQSEKMWKDFN 384 (606)
T ss_pred HHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCccc------------------chHHHHHHHHHhhh--hccHHHHHHHH
Confidence 36667777777778899999999999999875300 01255556666665 55666666666
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 043158 112 QAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSRA 191 (1962)
Q Consensus 112 rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~A 191 (1962)
.|..+||.+++++|+.|++..-++++++|+.-|++|++++|+++-++.+++.++++.++++++...|+.+.+..|+.++.
T Consensus 385 ~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Ev 464 (606)
T KOG0547|consen 385 KAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEV 464 (606)
T ss_pred HHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666555
Q ss_pred HHHHHH
Q 043158 192 LHVKNT 197 (1962)
Q Consensus 192 l~lk~~ 197 (1962)
+.+-+.
T Consensus 465 y~~fAe 470 (606)
T KOG0547|consen 465 YNLFAE 470 (606)
T ss_pred HHHHHH
Confidence 544433
No 62
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.71 E-value=3.3e-07 Score=103.36 Aligned_cols=138 Identities=12% Similarity=0.079 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcC------CCCHHHHH
Q 043158 34 TQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQG------SSHYESAL 107 (1962)
Q Consensus 34 lalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g------~Gr~eEAL 107 (1962)
..+|..|..+.+.|++++|+..|+++++..|-. + . ...+++++|.++.... .|++++|+
T Consensus 71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~---~-~-----------~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~ 135 (235)
T TIGR03302 71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNH---P-D-----------ADYAYYLRGLSNYNQIDRVDRDQTAAREAF 135 (235)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC---C-c-----------hHHHHHHHHHHHHHhcccccCCHHHHHHHH
Confidence 467889999999999999999999999854311 0 0 0136778888887631 15799999
Q ss_pred HHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHH
Q 043158 108 RCYLQAVEIDTKDSVVW-----------------NQLGTLACSMGLLSISRWAFEQGLLCSPNN---WNCMEKLLEVLIA 167 (1962)
Q Consensus 108 e~y~rALaLDP~DaeaW-----------------~nLG~al~~LGr~eeAr~alErALeLdPd~---~~Al~nLg~aL~~ 167 (1962)
..|.+++..+|++..++ +.+|.++...|++.+|+..|++++...|+. +.++.++|.++..
T Consensus 136 ~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~ 215 (235)
T TIGR03302 136 EAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLK 215 (235)
T ss_pred HHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHH
Confidence 99999999999997664 467889999999999999999999997764 5899999999999
Q ss_pred cCCHHHHHHHHHHHHHhCC
Q 043158 168 IGDEVACLSVAELILRHWP 186 (1962)
Q Consensus 168 LGdyeeAL~~~~rALeLdP 186 (1962)
+|++++|..+++......|
T Consensus 216 lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 216 LGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred cCCHHHHHHHHHHHHhhCC
Confidence 9999999998877766555
No 63
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.69 E-value=2.3e-07 Score=92.33 Aligned_cols=110 Identities=19% Similarity=0.185 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 043158 33 LTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQ 112 (1962)
Q Consensus 33 AlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~r 112 (1962)
+..+|..|..+.++|++++|.+.|++++...+-. + . ...++.++|.++... |++++|+..|.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~-~-----------~~~~~~~l~~~~~~~--~~~~~A~~~~~~ 64 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKS---T-Y-----------APNAHYWLGEAYYAQ--GKYADAAKAFLA 64 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc---c-c-----------cHHHHHHHHHHHHhh--ccHHHHHHHHHH
Confidence 4568999999999999999999999998753210 0 0 135788999999999 899999999999
Q ss_pred HHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHH
Q 043158 113 AVEIDTKD---SVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCME 159 (1962)
Q Consensus 113 ALaLDP~D---aeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~ 159 (1962)
++..+|++ +.+|+++|.++..+|++++|+..|++++...|++..+..
T Consensus 65 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 65 VVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 99999986 789999999999999999999999999999999877654
No 64
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.67 E-value=3.4e-07 Score=99.73 Aligned_cols=107 Identities=24% Similarity=0.326 Sum_probs=93.7
Q ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 043158 31 SHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCY 110 (1962)
Q Consensus 31 eeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y 110 (1962)
..+...|..|..+...|++++|...|+++++..+-. + + ...++.++|.++... |++++|+.+|
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~-~-----------~~~~~~~la~~~~~~--g~~~~A~~~~ 95 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDP---N-D-----------RSYILYNMGIIYASN--GEHDKALEYY 95 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc---c-h-----------HHHHHHHHHHHHHHc--CCHHHHHHHH
Confidence 467788999999999999999999999999753210 0 0 236899999999999 9999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCC--------------hHHHHHHHHHHHhcCCCC
Q 043158 111 LQAVEIDTKDSVVWNQLGTLACSMGL--------------LSISRWAFEQGLLCSPNN 154 (1962)
Q Consensus 111 ~rALaLDP~DaeaW~nLG~al~~LGr--------------~eeAr~alErALeLdPd~ 154 (1962)
.+|+..+|+++.++.++|.++..+|+ +++|+.++++++.++|++
T Consensus 96 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 96 HQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 99999999999999999999999998 688888899999999887
No 65
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.66 E-value=4.8e-07 Score=114.85 Aligned_cols=150 Identities=17% Similarity=0.106 Sum_probs=117.7
Q ss_pred cHHHHHHHHHHHHHCCC---HHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHH---cC---CCC
Q 043158 32 HLTQTYHEGLLKLQSKE---YDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQ---QG---SSH 102 (1962)
Q Consensus 32 eAlalYqkAL~L~qqGR---feEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~---~g---~Gr 102 (1962)
+|..+|.+|..+...++ +++|.++|+++++.+| +. ..+|--++.++.. .. .++
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP-------~~-----------a~a~A~la~~~~~~~~~~~~~~~~ 399 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEP-------DF-----------TYAQAEKALADIVRHSQQPLDEKQ 399 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCC-------Cc-----------HHHHHHHHHHHHHHHhcCCccHHH
Confidence 78889999998887755 8899999999999765 21 1122222222211 10 023
Q ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043158 103 YESALRCYLQAVEI--DTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAEL 180 (1962)
Q Consensus 103 ~eEALe~y~rALaL--DP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~r 180 (1962)
...|.+...+|+++ +|.++.++..+|..+...|++++|..+|++|++++|+ +.+|..+|.++...|++++|++.|++
T Consensus 400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 400 LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYST 478 (517)
T ss_pred HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 56778888887775 8999999999999999999999999999999999994 89999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHhhh
Q 043158 181 ILRHWPSHSRALHVKNTIEE 200 (1962)
Q Consensus 181 ALeLdPd~a~Al~lk~~I~~ 200 (1962)
|+.++|.++.-+......++
T Consensus 479 A~~L~P~~pt~~~~~~~~f~ 498 (517)
T PRK10153 479 AFNLRPGENTLYWIENLVFQ 498 (517)
T ss_pred HHhcCCCCchHHHHHhcccc
Confidence 99999999864433444443
No 66
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.66 E-value=3.7e-07 Score=98.88 Aligned_cols=110 Identities=18% Similarity=0.223 Sum_probs=92.3
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRC 109 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~ 109 (1962)
...+..++..|..++..|++++|+..|+++++..+.. . . ...+|.|+|.++... |++++|+.+
T Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~-----~-----~-----~~~~~~~lg~~~~~~--g~~~eA~~~ 94 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDP-----Y-----D-----RSYILYNIGLIHTSN--GEHTKALEY 94 (168)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccc-----h-----h-----hHHHHHHHHHHHHHc--CCHHHHHHH
Confidence 3457788999999999999999999999999763200 0 0 135899999999999 999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHH-------HcCChH-------HHHHHHHHHHhcCCCCHH
Q 043158 110 YLQAVEIDTKDSVVWNQLGTLAC-------SMGLLS-------ISRWAFEQGLLCSPNNWN 156 (1962)
Q Consensus 110 y~rALaLDP~DaeaW~nLG~al~-------~LGr~e-------eAr~alErALeLdPd~~~ 156 (1962)
|.+|+.++|..+..|.++|.++. .+|+++ +|+.+|++++..+|++.+
T Consensus 95 ~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~ 155 (168)
T CHL00033 95 YFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYI 155 (168)
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHH
Confidence 99999999999999999999999 777766 667777788888987653
No 67
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.65 E-value=2.8e-07 Score=116.89 Aligned_cols=134 Identities=19% Similarity=0.123 Sum_probs=119.1
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 043158 36 TYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQAVE 115 (1962)
Q Consensus 36 lYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rALa 115 (1962)
+...|......+.-++|.-+..++-+..+ +-+..|+-.|..+..+ |...+|.++|..|+.
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~~------------------l~~~~~~~~G~~~~~~--~~~~EA~~af~~Al~ 712 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKIDP------------------LSASVYYLRGLLLEVK--GQLEEAKEAFLVALA 712 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcch------------------hhHHHHHHhhHHHHHH--HhhHHHHHHHHHHHh
Confidence 44566666677888888888887766532 1246788999999999 899999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHH--HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 043158 116 IDTKDSVVWNQLGTLACSMGLLSISRW--AFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHS 189 (1962)
Q Consensus 116 LDP~DaeaW~nLG~al~~LGr~eeAr~--alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a 189 (1962)
+||+++.....+|.++...|+.+.|.. .+..|+++||.++++|++||.++..+||.++|..||..|+++++.+|
T Consensus 713 ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 713 LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 999999999999999999999999888 99999999999999999999999999999999999999999998866
No 68
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.63 E-value=7.8e-08 Score=88.17 Aligned_cols=64 Identities=27% Similarity=0.425 Sum_probs=49.0
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH
Q 043158 90 NLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNW 155 (1962)
Q Consensus 90 NLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~ 155 (1962)
.+|..+++. |++++|+.+|++++..+|+++++|+.+|.++..+|++++|+..|+++++++|++|
T Consensus 2 ~~a~~~~~~--g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQ--GDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHC--THHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHc--CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 467777777 7788888888888888888888888888888888888888888888888887765
No 69
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.62 E-value=1e-06 Score=104.80 Aligned_cols=153 Identities=18% Similarity=0.073 Sum_probs=121.0
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccc-hhc--------cCCCCC---chhhhH----H---hHHHHHHHH
Q 043158 32 HLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIAN-AQA--------ADGKSS---DGHLLQ----L---RFLALKNLA 92 (1962)
Q Consensus 32 eAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~-a~~--------~d~~~s---~s~lLq----L---~ylAykNLG 92 (1962)
.....+.+|+.+...|++++|.+.++++++..|... ... ++..+. ...++. . ...++.++|
T Consensus 42 ~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a 121 (355)
T cd05804 42 ERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLA 121 (355)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHH
Confidence 445678899999999999999999999997543221 100 010000 011111 1 234666889
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHc
Q 043158 93 TVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNW----NCMEKLLEVLIAI 168 (1962)
Q Consensus 93 ~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~----~Al~nLg~aL~~L 168 (1962)
.++... |++++|+..|+++++++|+++.++..+|.++...|++++|+..+++++...|..+ ..+..++.++...
T Consensus 122 ~~~~~~--G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~ 199 (355)
T cd05804 122 FGLEEA--GQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLER 199 (355)
T ss_pred HHHHHc--CCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHC
Confidence 999999 8999999999999999999999999999999999999999999999999987543 3466899999999
Q ss_pred CCHHHHHHHHHHHHHhCC
Q 043158 169 GDEVACLSVAELILRHWP 186 (1962)
Q Consensus 169 GdyeeAL~~~~rALeLdP 186 (1962)
|++++|+..+++++...|
T Consensus 200 G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 200 GDYEAALAIYDTHIAPSA 217 (355)
T ss_pred CCHHHHHHHHHHHhcccc
Confidence 999999999999987766
No 70
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=5.1e-07 Score=109.11 Aligned_cols=150 Identities=14% Similarity=0.187 Sum_probs=122.1
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRC 109 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~ 109 (1962)
.+.|...-..|..+.+.|+|..|...|++++..=. +... ....-...+.+++..+|.|++.++..+ +++.+|+.+
T Consensus 205 l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~--~~~~-~~~ee~~~~~~~k~~~~lNlA~c~lKl--~~~~~Ai~~ 279 (397)
T KOG0543|consen 205 LEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLE--YRRS-FDEEEQKKAEALKLACHLNLAACYLKL--KEYKEAIES 279 (397)
T ss_pred HHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhh--cccc-CCHHHHHHHHHHHHHHhhHHHHHHHhh--hhHHHHHHH
Confidence 35566777889999999999999999999987311 0000 000011345667889999999999999 899999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHh
Q 043158 110 YLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVAC-LSVAELILRH 184 (1962)
Q Consensus 110 y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeA-L~~~~rALeL 184 (1962)
..++|+++|+++-++|+.|.++..+|+|+.|+..|++|++++|++..+...|..+-....++.+. -..|.+.+..
T Consensus 280 c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 280 CNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999888777776666 3355555554
No 71
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.59 E-value=1.4e-06 Score=115.77 Aligned_cols=163 Identities=12% Similarity=0.119 Sum_probs=130.4
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhc------cCCCCCchhhhH----------HhHHHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQA------ADGKSSDGHLLQ----------LRFLALKNLAT 93 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~------~d~~~s~s~lLq----------L~ylAykNLG~ 93 (1962)
+..+...|.+|+...++|++++|++.|+++++..|...+.. ....+....+.. ..+.....+|.
T Consensus 31 p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ 110 (822)
T PRK14574 31 PAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAAR 110 (822)
T ss_pred ccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHH
Confidence 45667889999999999999999999999998765432110 000011111111 12556666788
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 043158 94 VFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVA 173 (1962)
Q Consensus 94 lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyee 173 (1962)
++... |++++|++.|+++++++|++++++..++.++...|+.++|+..+++++..+|..... ..++.++..++++.+
T Consensus 111 ly~~~--gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~ 187 (822)
T PRK14574 111 AYRNE--KRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYD 187 (822)
T ss_pred HHHHc--CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHH
Confidence 99998 899999999999999999999999999999999999999999999999999996665 556677777888888
Q ss_pred HHHHHHHHHHhCCCCHHHHHHH
Q 043158 174 CLSVAELILRHWPSHSRALHVK 195 (1962)
Q Consensus 174 AL~~~~rALeLdPd~a~Al~lk 195 (1962)
|+..++++++++|++..++..+
T Consensus 188 AL~~~ekll~~~P~n~e~~~~~ 209 (822)
T PRK14574 188 ALQASSEAVRLAPTSEEVLKNH 209 (822)
T ss_pred HHHHHHHHHHhCCCCHHHHHHH
Confidence 9999999999999998776554
No 72
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.58 E-value=1.3e-06 Score=92.70 Aligned_cols=135 Identities=19% Similarity=0.156 Sum_probs=115.3
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRC 109 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~ 109 (1962)
.+.+...|..++.....++...+.+.++++.+..+-.. ....+...+|.++... |++++|+..
T Consensus 8 ~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~---------------ya~~A~l~lA~~~~~~--g~~~~A~~~ 70 (145)
T PF09976_consen 8 AEQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSP---------------YAALAALQLAKAAYEQ--GDYDEAKAA 70 (145)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh---------------HHHHHHHHHHHHHHHC--CCHHHHHHH
Confidence 56788999999999999999999999999987532110 0136777899999999 999999999
Q ss_pred HHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043158 110 YLQAVEIDTKD---SVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELIL 182 (1962)
Q Consensus 110 y~rALaLDP~D---aeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rAL 182 (1962)
|.+++...|++ +.++.+||.++...|++++|+..++. +.-.+-.+.++..+|.++...|++++|...|++||
T Consensus 71 l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 71 LEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 99999988766 56899999999999999999999976 44455567788999999999999999999999885
No 73
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.55 E-value=7.9e-07 Score=80.64 Aligned_cols=99 Identities=29% Similarity=0.377 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 043158 35 QTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQAV 114 (1962)
Q Consensus 35 alYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rAL 114 (1962)
.++..|..+...|++++|...++++++..+ . ...++.++|.++... |++++|+.+|.+++
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-------~-----------~~~~~~~~~~~~~~~--~~~~~a~~~~~~~~ 61 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDP-------D-----------NADAYYNLAAAYYKL--GKYEEALEDYEKAL 61 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCC-------c-----------cHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 467889999999999999999999998632 1 125788999999999 89999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 043158 115 EIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPN 153 (1962)
Q Consensus 115 aLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd 153 (1962)
...|.+..+|+.+|.++...|+++.|...+++++..+|+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 62 ELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred hCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 999999999999999999999999999999999999884
No 74
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=4.4e-07 Score=109.10 Aligned_cols=149 Identities=14% Similarity=0.169 Sum_probs=128.4
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHH-hHHHHHHHHHHHHHcCCCCHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQL-RFLALKNLATVFLQQGSSHYESALR 108 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL-~ylAykNLG~lLl~~g~Gr~eEALe 108 (1962)
.-.+.++|-+++.+.-.+..+.|...|+++|.++|-+. .+...--++ ....+++.|+-++.. |++..|-+
T Consensus 200 ~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~-------~sk~~~~~~k~le~~k~~gN~~fk~--G~y~~A~E 270 (486)
T KOG0550|consen 200 ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQ-------KSKSASMMPKKLEVKKERGNDAFKN--GNYRKAYE 270 (486)
T ss_pred cchhHHHHhcccccccccchHHHHHHHhhhhccChhhh-------hHHhHhhhHHHHHHHHhhhhhHhhc--cchhHHHH
Confidence 66778888888888888999999999999998765221 011111112 347899999999999 99999999
Q ss_pred HHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 043158 109 CYLQAVEIDTKD----SVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRH 184 (1962)
Q Consensus 109 ~y~rALaLDP~D----aeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeL 184 (1962)
+|.+||.+||++ +-++.|+|.+..++|+.++|+.-.+.|+.+||.+..++...|.+...++++++|.+.|++|+++
T Consensus 271 ~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 271 CYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999986 6779999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 043158 185 WPS 187 (1962)
Q Consensus 185 dPd 187 (1962)
.-+
T Consensus 351 ~~s 353 (486)
T KOG0550|consen 351 EKD 353 (486)
T ss_pred ccc
Confidence 766
No 75
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.54 E-value=2.1e-06 Score=105.58 Aligned_cols=147 Identities=16% Similarity=0.166 Sum_probs=128.7
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 043158 32 HLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYL 111 (1962)
Q Consensus 32 eAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~ 111 (1962)
-....|-.|+.....|.+++|+.+++.+++..| + +...+--.|.++... ++..+|++.|+
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P-------~-----------N~~~~~~~~~i~~~~--nk~~~A~e~~~ 364 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAAQP-------D-----------NPYYLELAGDILLEA--NKAKEAIERLK 364 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHHhCC-------C-----------CHHHHHHHHHHHHHc--CChHHHHHHHH
Confidence 345679999999999999999999999997543 2 123445688999999 89999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 043158 112 QAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSRA 191 (1962)
Q Consensus 112 rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~A 191 (1962)
+|+.++|+.+-+|.++|.++.+.|++.+|+..+.+.+.-+|+++..|.-|+.++-.+|+..+|...+...+.+.-+...|
T Consensus 365 kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A 444 (484)
T COG4783 365 KALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQA 444 (484)
T ss_pred HHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888887666666
Q ss_pred HHHHHHh
Q 043158 192 LHVKNTI 198 (1962)
Q Consensus 192 l~lk~~I 198 (1962)
.......
T Consensus 445 ~~~l~~A 451 (484)
T COG4783 445 IIFLMRA 451 (484)
T ss_pred HHHHHHH
Confidence 5554443
No 76
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.52 E-value=3e-07 Score=116.16 Aligned_cols=139 Identities=17% Similarity=0.263 Sum_probs=117.3
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 043158 37 YHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQAVEI 116 (1962)
Q Consensus 37 YqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaL 116 (1962)
+..|.....+++|++|.+.+++.++..++ ....|+++|.+..+. ++...|+.+|.+++.+
T Consensus 489 r~~~~~~~~~~~fs~~~~hle~sl~~npl------------------q~~~wf~~G~~ALql--ek~q~av~aF~rcvtL 548 (777)
T KOG1128|consen 489 RSLALLILSNKDFSEADKHLERSLEINPL------------------QLGTWFGLGCAALQL--EKEQAAVKAFHRCVTL 548 (777)
T ss_pred HhhccccccchhHHHHHHHHHHHhhcCcc------------------chhHHHhccHHHHHH--hhhHHHHHHHHHHhhc
Confidence 33344444557777777777777775431 247899999999999 8999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 043158 117 DTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSRALHVK 195 (1962)
Q Consensus 117 DP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~Al~lk 195 (1962)
+|++.++|+|++.++..+|+..+|..++.+|++++-+||..|.|--.+..+.|.+++|+.+|.+.+.+.-++...-+++
T Consensus 549 ~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~ 627 (777)
T KOG1128|consen 549 EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLL 627 (777)
T ss_pred CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhH
Confidence 9999999999999999999999999999999999999999999999999999999999999999888754444333333
No 77
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.52 E-value=3e-07 Score=84.28 Aligned_cols=65 Identities=25% Similarity=0.155 Sum_probs=61.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 043158 125 NQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHS 189 (1962)
Q Consensus 125 ~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a 189 (1962)
+.+|.++...|++++|+.+|+++++.+|+++.++..+|.++..+|++++|+..|+++++++|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999975
No 78
>PRK11906 transcriptional regulator; Provisional
Probab=98.50 E-value=2.9e-06 Score=104.71 Aligned_cols=151 Identities=15% Similarity=0.065 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHh---cCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcC--CCCHHHH
Q 043158 35 QTYHEGLLKLQSK---EYDKAQELLESVL---KDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQG--SSHYESA 106 (1962)
Q Consensus 35 alYqkAL~L~qqG---RfeEA~eaY~raL---a~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g--~Gr~eEA 106 (1962)
.+|.+|..+..++ ..+.|..+|.+++ ..+| +. +...-..|+.+....+.... ..+..+|
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp-------~~------a~a~~~lA~~h~~~~~~g~~~~~~~~~~a 323 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQT-------LK------TECYCLLAECHMSLALHGKSELELAAQKA 323 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCc-------cc------HHHHHHHHHHHHHHHHhcCCCchHHHHHH
Confidence 6688888887664 4567888899999 4432 11 11111234444333332210 1457889
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 043158 107 LRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWP 186 (1962)
Q Consensus 107 Le~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdP 186 (1962)
+++-++|+++||.|+-++..+|.++.-.|+++.|...|++|+.++|+.+.+++-+|.++.-.|+.++|..++++|++++|
T Consensus 324 ~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP 403 (458)
T PRK11906 324 LELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEP 403 (458)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHh
Q 043158 187 SHSRALHVKNTI 198 (1962)
Q Consensus 187 d~a~Al~lk~~I 198 (1962)
.-..|-.++..+
T Consensus 404 ~~~~~~~~~~~~ 415 (458)
T PRK11906 404 RRRKAVVIKECV 415 (458)
T ss_pred hhhHHHHHHHHH
Confidence 988888777776
No 79
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=1.2e-06 Score=108.44 Aligned_cols=165 Identities=15% Similarity=0.058 Sum_probs=128.0
Q ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCc-ccchhc--c------CCCC----CchhhhHH---hHHHHHHHHHH
Q 043158 31 SHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPL-IANAQA--A------DGKS----SDGHLLQL---RFLALKNLATV 94 (1962)
Q Consensus 31 eeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~-lk~a~~--~------d~~~----s~s~lLqL---~ylAykNLG~l 94 (1962)
..+.+|..-|..++-.|..|+|..+|..|-++-+ ...+-. + .... ...+++.+ ....++-+|.+
T Consensus 344 ~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvv 423 (611)
T KOG1173|consen 344 TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVV 423 (611)
T ss_pred cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhhe
Confidence 3567788888888999999999999999887421 110000 0 0000 00111111 34678889999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 043158 95 FLQQGSSHYESALRCYLQAVEIDTK-------DSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIA 167 (1962)
Q Consensus 95 Ll~~g~Gr~eEALe~y~rALaLDP~-------DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~ 167 (1962)
.+.. +.+.+|+..|+.|++.-++ -...|.|||.++++++.+++|+.+|++||.+.|.++..+..+|-++..
T Consensus 424 ay~~--~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~l 501 (611)
T KOG1173|consen 424 AYTY--EEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHL 501 (611)
T ss_pred eehH--hhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Confidence 9988 8999999999999943322 345699999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 043158 168 IGDEVACLSVAELILRHWPSHSRALHVKNT 197 (1962)
Q Consensus 168 LGdyeeAL~~~~rALeLdPd~a~Al~lk~~ 197 (1962)
+|+.+.|+.+|.+||.++|++..+--++..
T Consensus 502 lgnld~Aid~fhKaL~l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 502 LGNLDKAIDHFHKALALKPDNIFISELLKL 531 (611)
T ss_pred hcChHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 999999999999999999999655544443
No 80
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.49 E-value=3e-06 Score=99.74 Aligned_cols=167 Identities=18% Similarity=0.155 Sum_probs=132.1
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhcc------------C-CCCCchhhhHH--------hHHHHHH
Q 043158 32 HLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAA------------D-GKSSDGHLLQL--------RFLALKN 90 (1962)
Q Consensus 32 eAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~------------d-~~~s~s~lLqL--------~ylAykN 90 (1962)
..+++++.|-.++..|-+|.|+..|..+.+.+.+...... . +......+..+ -+..|.-
T Consensus 106 r~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCE 185 (389)
T COG2956 106 RLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCE 185 (389)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHH
Confidence 5678889999999999999999999999886544432110 0 00000001001 1234556
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcC
Q 043158 91 LATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNN-WNCMEKLLEVLIAIG 169 (1962)
Q Consensus 91 LG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~-~~Al~nLg~aL~~LG 169 (1962)
|++.+... .+.+.|+..+.+|++-||+++.+-..+|++....|+|+.|+.+++++++-||++ ++++..|..+|.++|
T Consensus 186 LAq~~~~~--~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg 263 (389)
T COG2956 186 LAQQALAS--SDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLG 263 (389)
T ss_pred HHHHHhhh--hhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhC
Confidence 77777666 789999999999999999999999999999999999999999999999999998 667899999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHhhh
Q 043158 170 DEVACLSVAELILRHWPSHSRALHVKNTIEE 200 (1962)
Q Consensus 170 dyeeAL~~~~rALeLdPd~a~Al~lk~~I~~ 200 (1962)
+.++.+.++.++.+..++...-+.+-..+..
T Consensus 264 ~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~ 294 (389)
T COG2956 264 KPAEGLNFLRRAMETNTGADAELMLADLIEL 294 (389)
T ss_pred CHHHHHHHHHHHHHccCCccHHHHHHHHHHH
Confidence 9999999999999999988766666555544
No 81
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=1e-06 Score=107.48 Aligned_cols=143 Identities=13% Similarity=0.070 Sum_probs=127.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 043158 36 TYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQAVE 115 (1962)
Q Consensus 36 lYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rALa 115 (1962)
+..+|+.+.+..+-++-...|..+..++| . +...|+.+|+++.-+ +++++|+..|++|+.
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp-------~-----------n~dvYyHRgQm~flL--~q~e~A~aDF~Kai~ 422 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDP-------E-----------NPDVYYHRGQMRFLL--QQYEEAIADFQKAIS 422 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCC-------C-----------CCchhHhHHHHHHHH--HHHHHHHHHHHHHhh
Confidence 45567777777788888888888877653 1 236899999999999 899999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CH
Q 043158 116 IDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPS------HS 189 (1962)
Q Consensus 116 LDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd------~a 189 (1962)
++|.++-++..++.++.+++++.++...|+.+...-|+.++++.-.|.+|.+.++++.|+..|.+|+++.|. ++
T Consensus 423 L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~ 502 (606)
T KOG0547|consen 423 LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNA 502 (606)
T ss_pred cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 66
Q ss_pred HHHHHHHHh
Q 043158 190 RALHVKNTI 198 (1962)
Q Consensus 190 ~Al~lk~~I 198 (1962)
..+..++.+
T Consensus 503 ~plV~Ka~l 511 (606)
T KOG0547|consen 503 APLVHKALL 511 (606)
T ss_pred hhhhhhhHh
Confidence 666666555
No 82
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.44 E-value=3.9e-07 Score=88.06 Aligned_cols=80 Identities=20% Similarity=0.262 Sum_probs=74.4
Q ss_pred CCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 043158 101 SHYESALRCYLQAVEIDTK--DSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVA 178 (1962)
Q Consensus 101 Gr~eEALe~y~rALaLDP~--DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~ 178 (1962)
|++++|+..|.++++.+|+ +...|+.+|.++.++|+++.|+..+++ +..+|.++.++.-+|.++..+|++++|+.++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 7899999999999999995 688999999999999999999999999 9999999999999999999999999999998
Q ss_pred HHH
Q 043158 179 ELI 181 (1962)
Q Consensus 179 ~rA 181 (1962)
++|
T Consensus 82 ~~~ 84 (84)
T PF12895_consen 82 EKA 84 (84)
T ss_dssp HHH
T ss_pred hcC
Confidence 875
No 83
>PRK15331 chaperone protein SicA; Provisional
Probab=98.43 E-value=1.9e-06 Score=94.38 Aligned_cols=107 Identities=14% Similarity=0.042 Sum_probs=86.1
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRC 109 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~ 109 (1962)
.+....+|..|..+.++|++++|...|+-+...++. ++..|..||.++..+ +++++|+.+
T Consensus 34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~------------------n~~Y~~GLaa~~Q~~--k~y~~Ai~~ 93 (165)
T PRK15331 34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFY------------------NPDYTMGLAAVCQLK--KQFQKACDL 93 (165)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC------------------cHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 667788888888888888888888888887764321 234578888888888 788888888
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHH
Q 043158 110 YLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNC 157 (1962)
Q Consensus 110 y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~A 157 (1962)
|..|..++++||...+..|.++..+|+...|+.||+.|+. .|.+...
T Consensus 94 Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l 140 (165)
T PRK15331 94 YAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESL 140 (165)
T ss_pred HHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHH
Confidence 8888888888888888888888888888888888888888 4554443
No 84
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.42 E-value=4.5e-06 Score=99.31 Aligned_cols=153 Identities=16% Similarity=0.019 Sum_probs=118.4
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRC 109 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~ 109 (1962)
++.+..++..|..+...|+.++|...|.++.+..+.. . + ........|.++... |++++|++.
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~-----------~~e~~~~~a~~~~~~--g~~~~A~~~ 65 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAAR---A-T-----------ERERAHVEALSAWIA--GDLPKALAL 65 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccC---C-C-----------HHHHHHHHHHHHHHc--CCHHHHHHH
Confidence 6788899999999999999999999999988743211 0 0 123455678888888 899999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCC----hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 043158 110 YLQAVEIDTKDSVVWNQLGTLACSMGL----LSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHW 185 (1962)
Q Consensus 110 y~rALaLDP~DaeaW~nLG~al~~LGr----~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLd 185 (1962)
++++++.+|+|..++.. +..+..+|. ...+..+++.....+|+.+.++..+|.++...|++++|...++++++++
T Consensus 66 ~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~ 144 (355)
T cd05804 66 LEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN 144 (355)
T ss_pred HHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 99999999999988885 555544444 4444444444445677778888889999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhh
Q 043158 186 PSHSRALHVKNTIEE 200 (1962)
Q Consensus 186 Pd~a~Al~lk~~I~~ 200 (1962)
|+++.+++.++.+..
T Consensus 145 p~~~~~~~~la~i~~ 159 (355)
T cd05804 145 PDDAWAVHAVAHVLE 159 (355)
T ss_pred CCCcHHHHHHHHHHH
Confidence 999888877777643
No 85
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.38 E-value=5.4e-06 Score=97.36 Aligned_cols=111 Identities=16% Similarity=0.190 Sum_probs=99.2
Q ss_pred HHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHHH
Q 043158 86 LALKNLATVF-LQQGSSHYESALRCYLQAVEIDTKD---SVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNN---WNCM 158 (1962)
Q Consensus 86 lAykNLG~lL-l~~g~Gr~eEALe~y~rALaLDP~D---aeaW~nLG~al~~LGr~eeAr~alErALeLdPd~---~~Al 158 (1962)
..+++.|..+ ... |++++|+..|.+.+...|++ +.+++.+|.++...|++++|+..|++++...|++ ++++
T Consensus 143 ~~~Y~~A~~l~~~~--~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 143 NTDYNAAIALVQDK--SRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 5667777766 455 89999999999999999998 6899999999999999999999999999998885 8889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 043158 159 EKLLEVLIAIGDEVACLSVAELILRHWPSHSRALHVKNTI 198 (1962)
Q Consensus 159 ~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I 198 (1962)
..+|.++..+|++++|...|+++++..|+...+..-+..+
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL 260 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRL 260 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHH
Confidence 9999999999999999999999999999988766555443
No 86
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.36 E-value=4.2e-06 Score=108.56 Aligned_cols=170 Identities=17% Similarity=0.174 Sum_probs=123.5
Q ss_pred CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhc----c----C------CCCCchhhhHH---hHH-----
Q 043158 29 PESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQA----A----D------GKSSDGHLLQL---RFL----- 86 (1962)
Q Consensus 29 ~eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~----~----d------~~~s~s~lLqL---~yl----- 86 (1962)
.+.+++.++-+|-.....|+|-.|+.+|+.+|...|...+.+ + . +..+..++++| ...
T Consensus 160 sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L 239 (1018)
T KOG2002|consen 160 SPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVAL 239 (1018)
T ss_pred CCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHH
Confidence 477889999999999999999999999999998654222222 0 0 00011222332 122
Q ss_pred --------------------------------HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHH
Q 043158 87 --------------------------------ALKNLATVFLQQGSSHYESALRCYLQAVEIDTKD---SVVWNQLGTLA 131 (1962)
Q Consensus 87 --------------------------------AykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~D---aeaW~nLG~al 131 (1962)
+...|+.-++-. |+|..+......|+.-.-.. ++.+|.+|+++
T Consensus 240 ~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK--~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~ 317 (1018)
T KOG2002|consen 240 GEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFK--KDYERVWHLAEHAIKNTENKSIKAESFYQLGRSY 317 (1018)
T ss_pred HHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhc--ccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 333344444444 66777777777776665444 34488888999
Q ss_pred HHcCChHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhh
Q 043158 132 CSMGLLSISRWAFEQGLLCSPNN-WNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSRALHVKNTIEE 200 (1962)
Q Consensus 132 ~~LGr~eeAr~alErALeLdPd~-~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I~~ 200 (1962)
.++|+|+.|-.+|-+++..+|++ .-.+..||.++...|+++.|..+|++.++..|++.+...+++.++.
T Consensus 318 Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya 387 (1018)
T KOG2002|consen 318 HAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYA 387 (1018)
T ss_pred HhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHH
Confidence 99999999999999999999888 7888889999999999999999999999999998888888877754
No 87
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.36 E-value=1.3e-05 Score=94.79 Aligned_cols=157 Identities=17% Similarity=0.168 Sum_probs=130.0
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRC 109 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~ 109 (1962)
++...+..|+|..++++|.+++|++-|+.+|+..+...... + ..++ +.+--.-|...-++....+.|++..|++.
T Consensus 103 pDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~-e---aqsk-l~~~~e~~~l~~ql~s~~~~GD~~~ai~~ 177 (504)
T KOG0624|consen 103 PDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVL-E---AQSK-LALIQEHWVLVQQLKSASGSGDCQNAIEM 177 (504)
T ss_pred ccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhH-H---HHHH-HHhHHHHHHHHHHHHHHhcCCchhhHHHH
Confidence 88889999999999999999999999999998754221000 0 0011 12222333334444444445999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 043158 110 YLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHS 189 (1962)
Q Consensus 110 y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a 189 (1962)
..+.|++.|=|+.++...+.++...|....|+.-++.|-++.-++.++++....+++.+|+.+.++..++..|++||+|-
T Consensus 178 i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK 257 (504)
T KOG0624|consen 178 ITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHK 257 (504)
T ss_pred HHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred HH
Q 043158 190 RA 191 (1962)
Q Consensus 190 ~A 191 (1962)
.-
T Consensus 258 ~C 259 (504)
T KOG0624|consen 258 LC 259 (504)
T ss_pred hH
Confidence 43
No 88
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.36 E-value=3e-05 Score=95.69 Aligned_cols=176 Identities=13% Similarity=0.022 Sum_probs=125.2
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---------------------
Q 043158 91 LATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLL--------------------- 149 (1962)
Q Consensus 91 LG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALe--------------------- 149 (1962)
.+.++... |++++|+..++++++.+|+++.++..++.++.+.|++++|+..+++..+
T Consensus 159 ~a~l~l~~--g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~ 236 (398)
T PRK10747 159 RVRIQLAR--NENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLM 236 (398)
T ss_pred HHHHHHHC--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 47788888 8999999999999999999999999999999999999999955554442
Q ss_pred ---------------------cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhhcCCCCCCC
Q 043158 150 ---------------------CSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSRALHVKNTIEETEPVPYAP 208 (1962)
Q Consensus 150 ---------------------LdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I~~adP~~f~P 208 (1962)
-.|++++++..++..+...|+.++|...++++++. |.++........+...+|..-.
T Consensus 237 ~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l~~~~~~~al- 314 (398)
T PRK10747 237 DQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRLKTNNPEQLE- 314 (398)
T ss_pred HHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhccCCChHHHH-
Confidence 22456777788889999999999999999999995 4455544455554332211100
Q ss_pred CCc---cccCccchhhHHHHhhhHHhh-hhhhhhhhhccccccccccChhhHHHHHHHHHHHhCCCCc
Q 043158 209 RGI---DKLEPKHVRLKFIDKRKAAAE-ILDEGVVCKKLNQNIELCLAESSWAALADTLLDILCPLNG 272 (1962)
Q Consensus 209 ~~~---daL~p~~~~L~~i~krk~ed~-~~dEAle~Rk~~~al~L~l~~~SW~~LG~SLL~Ll~~~~~ 272 (1962)
... ....|.+..+....++..... .+++|.+. +...+.+.|+...+..++..+.+.+.+...
T Consensus 315 ~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~--le~al~~~P~~~~~~~La~~~~~~g~~~~A 380 (398)
T PRK10747 315 KVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLA--FRAALKQRPDAYDYAWLADALDRLHKPEEA 380 (398)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHH--HHHHHhcCCCHHHHHHHHHHHHHcCCHHHH
Confidence 000 012466666666666443322 55666433 456777888888889999999887766543
No 89
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.32 E-value=1.2e-05 Score=93.15 Aligned_cols=127 Identities=18% Similarity=0.168 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 043158 35 QTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQAV 114 (1962)
Q Consensus 35 alYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rAL 114 (1962)
.+-..|..+.+.|+|.+|+..++++....| . +..+|..+|.+|.+. ||+++|-..|.+|+
T Consensus 102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p-------~-----------d~~~~~~lgaaldq~--Gr~~~Ar~ay~qAl 161 (257)
T COG5010 102 LLAAQGKNQIRNGNFGEAVSVLRKAARLAP-------T-----------DWEAWNLLGAALDQL--GRFDEARRAYRQAL 161 (257)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhccCC-------C-----------ChhhhhHHHHHHHHc--cChhHHHHHHHHHH
Confidence 333477778899999999999999988643 1 247899999999999 99999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043158 115 EIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELI 181 (1962)
Q Consensus 115 aLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rA 181 (1962)
++.|+++.+..|+|..+.-.|+++.|+..+.++...-+.+..+..||+.+....||..+|.....+-
T Consensus 162 ~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 162 ELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred HhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 9999999999999999999999999999999999999999999999999999999999998865443
No 90
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.32 E-value=2.6e-06 Score=108.03 Aligned_cols=158 Identities=18% Similarity=0.121 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchh--ccCC---CCCchhhhHH----hHHHHHHHHHHHHHcCCCCH
Q 043158 33 LTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQ--AADG---KSSDGHLLQL----RFLALKNLATVFLQQGSSHY 103 (1962)
Q Consensus 33 AlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~--~~d~---~~s~s~lLqL----~ylAykNLG~lLl~~g~Gr~ 103 (1962)
...+-+..+.|...|+.+.|...-++.++.++.+... .+|. ...+.++..+ ...|.+.+|...+.. +++
T Consensus 424 lemw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~--~~f 501 (777)
T KOG1128|consen 424 LEMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSN--KDF 501 (777)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccc--hhH
Confidence 3445567788888999999999999998854422111 1111 1122333332 234566677767766 899
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043158 104 ESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILR 183 (1962)
Q Consensus 104 eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALe 183 (1962)
.+|..+|+++++++|--...||++|.++.+++++..|..+|.+++.++|+|..+|.|++.++..+|+..+|-..+.+|++
T Consensus 502 s~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK 581 (777)
T KOG1128|consen 502 SEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK 581 (777)
T ss_pred HHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHH
Q 043158 184 HWPSHSRAL 192 (1962)
Q Consensus 184 LdPd~a~Al 192 (1962)
.+=++...|
T Consensus 582 cn~~~w~iW 590 (777)
T KOG1128|consen 582 CNYQHWQIW 590 (777)
T ss_pred cCCCCCeee
Confidence 986665544
No 91
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.31 E-value=1.6e-06 Score=106.76 Aligned_cols=65 Identities=11% Similarity=0.030 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCChHHHHHHHHHHHhc
Q 043158 84 RFLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVV---WNQLGTLACSMGLLSISRWAFEQGLLC 150 (1962)
Q Consensus 84 ~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~Daea---W~nLG~al~~LGr~eeAr~alErALeL 150 (1962)
.+.+|+|+|.+|... |++++|+.+|++||+++|+++++ |||+|.+|..+|++++|+.+|++|+++
T Consensus 74 ~a~a~~NLG~AL~~l--GryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSK--GRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 567888888888888 78888888888888888888855 888888888888888888888888887
No 92
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=1.2e-05 Score=99.93 Aligned_cols=169 Identities=15% Similarity=0.112 Sum_probs=133.2
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCc-ccchhcc--C---CC-------CCchhhhHHh---HHHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPL-IANAQAA--D---GK-------SSDGHLLQLR---FLALKNLAT 93 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~-lk~a~~~--d---~~-------~s~s~lLqL~---ylAykNLG~ 93 (1962)
|..|..||.-|.-+.--|++.+|...|-++-.+++ +.+++.+ . .. ..+.++.++. +.-..-+|.
T Consensus 309 P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgm 388 (611)
T KOG1173|consen 309 PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGM 388 (611)
T ss_pred CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHH
Confidence 66778899999999999999999999999988764 3333321 0 00 0112222221 223334777
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC----C---CCHHHHHHHHHHHH
Q 043158 94 VFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCS----P---NNWNCMEKLLEVLI 166 (1962)
Q Consensus 94 lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLd----P---d~~~Al~nLg~aL~ 166 (1962)
=+.+. +.++-|-.+|.+|+++.|.||-+..-+|.+....+.|.+|...|+.++..- + .-.+.+.|||-++.
T Consensus 389 ey~~t--~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~R 466 (611)
T KOG1173|consen 389 EYMRT--NNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYR 466 (611)
T ss_pred HHHHh--ccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHH
Confidence 78877 789999999999999999999999999999999999999999999999422 2 23456899999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhh
Q 043158 167 AIGDEVACLSVAELILRHWPSHSRALHVKNTIEE 200 (1962)
Q Consensus 167 ~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I~~ 200 (1962)
.++.+++|+.+|++||.+.|.++.++.-.+.|..
T Consensus 467 kl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~ 500 (611)
T KOG1173|consen 467 KLNKYEEAIDYYQKALLLSPKDASTHASIGYIYH 500 (611)
T ss_pred HHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Confidence 9999999999999999999999988877777743
No 93
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=2.8e-06 Score=102.37 Aligned_cols=113 Identities=19% Similarity=0.125 Sum_probs=102.7
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCH------------HHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 043158 84 RFLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDS------------VVWNQLGTLACSMGLLSISRWAFEQGLLCS 151 (1962)
Q Consensus 84 ~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~Da------------eaW~nLG~al~~LGr~eeAr~alErALeLd 151 (1962)
+..+.+-+|.+++-. ++.+.|+.+|.+||.+||++. ++|..-|.-+.+.|.++.|..+|..||.+|
T Consensus 202 n~~al~vrg~~~yy~--~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~id 279 (486)
T KOG0550|consen 202 NAEALYVRGLCLYYN--DNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNID 279 (486)
T ss_pred hhHHHHhcccccccc--cchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCC
Confidence 356777788888877 899999999999999999875 679999999999999999999999999999
Q ss_pred CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 043158 152 PNN----WNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSRALHVKNTI 198 (1962)
Q Consensus 152 Pd~----~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I 198 (1962)
|++ +..+.|++.+...+|+..+|+.-+..|+++||.+.+|+..++..
T Consensus 280 P~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 280 PSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred ccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 987 55689999999999999999999999999999999999877665
No 94
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.29 E-value=7.2e-06 Score=98.66 Aligned_cols=162 Identities=16% Similarity=0.125 Sum_probs=129.8
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCc-ccchhc----------cCCC-----CCchhhhHH---hHHHHHHHHHHHH
Q 043158 36 TYHEGLLKLQSKEYDKAQELLESVLKDPL-IANAQA----------ADGK-----SSDGHLLQL---RFLALKNLATVFL 96 (1962)
Q Consensus 36 lYqkAL~L~qqGRfeEA~eaY~raLa~p~-lk~a~~----------~d~~-----~s~s~lLqL---~ylAykNLG~lLl 96 (1962)
-.++|..++++|+++.|++.+.-.-+.+. .+.+.. +... ...+.++.. +..+..|-|++.+
T Consensus 422 ei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f 501 (840)
T KOG2003|consen 422 EINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAF 501 (840)
T ss_pred hhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceee
Confidence 36789999999999999998865443321 110111 0000 011112222 3467788898888
Q ss_pred HcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 043158 97 QQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLS 176 (1962)
Q Consensus 97 ~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~ 176 (1962)
.. |++++|++.|++||.-|....++++|+|..+..+|++++|+.||-+.-.+=-++++++.+++.++..+.+..+|++
T Consensus 502 ~n--gd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 502 AN--GDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred ec--CcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHH
Confidence 88 9999999999999999999999999999999999999999999998888888999999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHhh
Q 043158 177 VAELILRHWPSHSRALHVKNTIE 199 (1962)
Q Consensus 177 ~~~rALeLdPd~a~Al~lk~~I~ 199 (1962)
++.++..+-|+++..+.-++-++
T Consensus 580 ~~~q~~slip~dp~ilskl~dly 602 (840)
T KOG2003|consen 580 LLMQANSLIPNDPAILSKLADLY 602 (840)
T ss_pred HHHHhcccCCCCHHHHHHHHHHh
Confidence 99999999999998877766553
No 95
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.29 E-value=2e-06 Score=105.88 Aligned_cols=72 Identities=18% Similarity=0.020 Sum_probs=68.6
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHh-CCC
Q 043158 116 IDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNC---MEKLLEVLIAIGDEVACLSVAELILRH-WPS 187 (1962)
Q Consensus 116 LDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~A---l~nLg~aL~~LGdyeeAL~~~~rALeL-dPd 187 (1962)
-+|+++++|+|+|.++..+|+|++|+.+|++||+++|+++++ |+|+|.+|..+|++++|+.++++|+++ +|.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~~ 145 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLK 145 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcchh
Confidence 699999999999999999999999999999999999999965 999999999999999999999999998 443
No 96
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.28 E-value=9.8e-06 Score=95.73 Aligned_cols=150 Identities=17% Similarity=0.181 Sum_probs=129.1
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRC 109 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~ 109 (1962)
++++...+..|-.++..|++.+|+..|.+++..+| + .|.+++.+|.+|+.+ |+-..|+..
T Consensus 35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~dp-------~-----------~Y~aifrRaT~yLAm--Gksk~al~D 94 (504)
T KOG0624|consen 35 PADVEKHLELGKELLARGQLSDALTHYHAAVEGDP-------N-----------NYQAIFRRATVYLAM--GKSKAALQD 94 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCc-------h-----------hHHHHHHHHHHHhhh--cCCccchhh
Confidence 45677889999999999999999999999998754 2 589999999999999 899999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHHHHHHHHH------------HHHcCCHHHH
Q 043158 110 YLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNN---WNCMEKLLEV------------LIAIGDEVAC 174 (1962)
Q Consensus 110 y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~---~~Al~nLg~a------------L~~LGdyeeA 174 (1962)
+.+.|++.|+...+....|.+++++|.++.|..-|.++|.-+|++ .++...|+.+ ...-||+..|
T Consensus 95 l~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~a 174 (504)
T KOG0624|consen 95 LSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNA 174 (504)
T ss_pred HHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhH
Confidence 999999999999999999999999999999999999999999955 3444444321 2345999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHhh
Q 043158 175 LSVAELILRHWPSHSRALHVKNTIE 199 (1962)
Q Consensus 175 L~~~~rALeLdPd~a~Al~lk~~I~ 199 (1962)
++.+...|++.|=++.-+.+++..+
T Consensus 175 i~~i~~llEi~~Wda~l~~~Rakc~ 199 (504)
T KOG0624|consen 175 IEMITHLLEIQPWDASLRQARAKCY 199 (504)
T ss_pred HHHHHHHHhcCcchhHHHHHHHHHH
Confidence 9999999999999887666665543
No 97
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=2.8e-06 Score=105.17 Aligned_cols=107 Identities=15% Similarity=0.162 Sum_probs=99.2
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 043158 88 LKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIA 167 (1962)
Q Consensus 88 ykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~ 167 (1962)
++--|++.+.. |+++.|+.+|.+|+.++|.+..++-|...++..+|+|.+|+.--.++++++|+.+.+|.++|.++..
T Consensus 5 ~k~kgnaa~s~--~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~ 82 (539)
T KOG0548|consen 5 LKEKGNAAFSS--GDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFG 82 (539)
T ss_pred HHHHHHhhccc--ccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh
Confidence 44567788888 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 043158 168 IGDEVACLSVAELILRHWPSHSRALHVKN 196 (1962)
Q Consensus 168 LGdyeeAL~~~~rALeLdPd~a~Al~lk~ 196 (1962)
+|+|++|+..|...|+.+|++......+.
T Consensus 83 lg~~~eA~~ay~~GL~~d~~n~~L~~gl~ 111 (539)
T KOG0548|consen 83 LGDYEEAILAYSEGLEKDPSNKQLKTGLA 111 (539)
T ss_pred cccHHHHHHHHHHHhhcCCchHHHHHhHH
Confidence 99999999999999999999975554443
No 98
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.24 E-value=2e-05 Score=97.15 Aligned_cols=132 Identities=16% Similarity=0.192 Sum_probs=110.0
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRC 109 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~ 109 (1962)
..++...+.-|..+...|+.++|....+++++.++ + . .+..++.....++.++|+..
T Consensus 260 ~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~-------~-----~-----------~l~~l~~~l~~~~~~~al~~ 316 (398)
T PRK10747 260 RHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY-------D-----E-----------RLVLLIPRLKTNNPEQLEKV 316 (398)
T ss_pred hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-------C-----H-----------HHHHHHhhccCCChHHHHHH
Confidence 44566677788889999999999999999998542 1 0 11122222112789999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 043158 110 YLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHW 185 (1962)
Q Consensus 110 y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLd 185 (1962)
.++.+...|+|++++..+|+++...|++++|+.+|+++++.+|+... +..++.++..+|+.++|.++|++++.+-
T Consensus 317 ~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 317 LRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999765 4579999999999999999999998763
No 99
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.24 E-value=2.5e-05 Score=104.04 Aligned_cols=148 Identities=9% Similarity=-0.006 Sum_probs=118.8
Q ss_pred HHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC
Q 043158 42 LKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRF-LALKNLATVFLQQGSSHYESALRCYLQAVEIDTKD 120 (1962)
Q Consensus 42 ~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~y-lAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~D 120 (1962)
.+..+++|++|..+.+++.+.+|... . +..+ ..+.....| .++..+++++.-. |++.+|.+.+++.+...|.|
T Consensus 376 A~ld~e~~~~A~~~l~~~~~~~p~~~--~-~~~~-~~~~pn~d~~~~~~l~a~~~~~~--gdl~~Ae~~le~l~~~aP~n 449 (822)
T PRK14574 376 SLNESEQLDKAYQFAVNYSEQTPYQV--G-VYGL-PGKEPNDDWIEGQTLLVQSLVAL--NDLPTAQKKLEDLSSTAPAN 449 (822)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCcEE--e-ccCC-CCCCCCccHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCC
Confidence 34566778888777777776433100 0 0000 000111122 4566888888888 89999999999999999999
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 043158 121 SVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSRALHVK 195 (1962)
Q Consensus 121 aeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~Al~lk 195 (1962)
+.++..+|.+++..|.++.|...+++++.++|++..+...+|.+...+|++.+|....+..++..|+++....+.
T Consensus 450 ~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~l~ 524 (822)
T PRK14574 450 QNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQELD 524 (822)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998655444
No 100
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=7.6e-06 Score=99.25 Aligned_cols=111 Identities=16% Similarity=0.078 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 043158 85 FLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKD---------------SVVWNQLGTLACSMGLLSISRWAFEQGLL 149 (1962)
Q Consensus 85 ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~D---------------aeaW~nLG~al~~LGr~eeAr~alErALe 149 (1962)
..-.+-.|+.+++. |++..|...|.+|+..=+.+ ..++.||+.++.++++|.+|+.+..++|+
T Consensus 208 A~~~ke~Gn~~fK~--gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe 285 (397)
T KOG0543|consen 208 ADRKKERGNVLFKE--GKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE 285 (397)
T ss_pred HHHHHHhhhHHHhh--chHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 45567899999999 89999999999988765421 35899999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 043158 150 CSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSRALHVKNT 197 (1962)
Q Consensus 150 LdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~ 197 (1962)
++|+|..|+++.|.++..+|+|+.|...|++|++++|++-.+..-+..
T Consensus 286 ~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~ 333 (397)
T KOG0543|consen 286 LDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIK 333 (397)
T ss_pred cCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 999999999999999999999999999999999999999655544433
No 101
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.23 E-value=4.2e-06 Score=78.10 Aligned_cols=67 Identities=27% Similarity=0.394 Sum_probs=49.5
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHH
Q 043158 92 ATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEK 160 (1962)
Q Consensus 92 G~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~n 160 (1962)
..++... +++++|+.++.+++.++|+++.+|+.+|.++..+|++.+|+.+|+++++.+|+++.+..-
T Consensus 2 ~~~~~~~--~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 2 KQIYLQQ--EDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHHhC--CCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 4455666 677777777777777777777777777777777777777777777777777777666543
No 102
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.23 E-value=1.4e-05 Score=103.96 Aligned_cols=115 Identities=22% Similarity=0.290 Sum_probs=108.0
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q 043158 84 RFLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKD-SVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLL 162 (1962)
Q Consensus 84 ~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~D-aeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg 162 (1962)
...+++++|..+..+ |++++|..+|.+|++.+|++ .-.++.||+.++..|+++.|..||++++...|++.+.+.-||
T Consensus 306 ~aes~Y~~gRs~Ha~--Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG 383 (1018)
T KOG2002|consen 306 KAESFYQLGRSYHAQ--GDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILG 383 (1018)
T ss_pred HHHHHHHHHHHHHhh--ccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 457899999999999 99999999999999999999 889999999999999999999999999999999999999999
Q ss_pred HHHHHcC----CHHHHHHHHHHHHHhCCCCHHHHHHHHHhhh
Q 043158 163 EVLIAIG----DEVACLSVAELILRHWPSHSRALHVKNTIEE 200 (1962)
Q Consensus 163 ~aL~~LG----dyeeAL~~~~rALeLdPd~a~Al~lk~~I~~ 200 (1962)
.++...+ ..+.|..+..++++..|.+..||..++.+.+
T Consensus 384 ~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e 425 (1018)
T KOG2002|consen 384 CLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLE 425 (1018)
T ss_pred hHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 9988876 5688899999999999999999999988855
No 103
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.22 E-value=7e-06 Score=98.73 Aligned_cols=111 Identities=17% Similarity=0.140 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 043158 86 LALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVL 165 (1962)
Q Consensus 86 lAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL 165 (1962)
.+++|+|..+..+ |++++|++||.+.-.+--+++++++.++.+|..+.+...|++.|-+|..+=|++|..+..||.++
T Consensus 525 ealfniglt~e~~--~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dly 602 (840)
T KOG2003|consen 525 EALFNIGLTAEAL--GNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLY 602 (840)
T ss_pred HHHHHhcccHHHh--cCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHh
Confidence 6899999999999 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 043158 166 IAIGDEVACLSVAELILRHWPSHSRALHVKNTI 198 (1962)
Q Consensus 166 ~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I 198 (1962)
-+-||..+|.+|+-...+..|.+.+...+++.+
T Consensus 603 dqegdksqafq~~ydsyryfp~nie~iewl~ay 635 (840)
T KOG2003|consen 603 DQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAY 635 (840)
T ss_pred hcccchhhhhhhhhhcccccCcchHHHHHHHHH
Confidence 999999999999988888899887665555443
No 104
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.19 E-value=2.9e-05 Score=96.02 Aligned_cols=134 Identities=15% Similarity=0.084 Sum_probs=108.4
Q ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHH-HHHHHHHcCCCCHHHHHHH
Q 043158 31 SHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKN-LATVFLQQGSSHYESALRC 109 (1962)
Q Consensus 31 eeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykN-LG~lLl~~g~Gr~eEALe~ 109 (1962)
......+..|..+...|++++|.+.++++++..+ +. . ...+.. ........ ++..+++..
T Consensus 261 ~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~p-------d~-----~-----~~~~~~l~~~~~l~~--~~~~~~~~~ 321 (409)
T TIGR00540 261 HNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLG-------DD-----R-----AISLPLCLPIPRLKP--EDNEKLEKL 321 (409)
T ss_pred CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC-------Cc-----c-----cchhHHHHHhhhcCC--CChHHHHHH
Confidence 3567778888899999999999999999998533 11 0 001111 11122223 788999999
Q ss_pred HHHHHHhCCCCH--HHHHHHHHHHHHcCChHHHHHHHH--HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 043158 110 YLQAVEIDTKDS--VVWNQLGTLACSMGLLSISRWAFE--QGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRH 184 (1962)
Q Consensus 110 y~rALaLDP~Da--eaW~nLG~al~~LGr~eeAr~alE--rALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeL 184 (1962)
+++++..+|+|+ .+...+|.++.+.|++++|+.+|+ ++++.+|+...+ ..+|.++..+|+.++|.+++++++..
T Consensus 322 ~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~-~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 322 IEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDL-AMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999 899999999999999999999999 688899988774 49999999999999999999988765
No 105
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.19 E-value=4.2e-06 Score=77.08 Aligned_cols=63 Identities=16% Similarity=0.146 Sum_probs=54.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 043158 101 SHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLE 163 (1962)
Q Consensus 101 Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~ 163 (1962)
|++++|+..|+++++.+|+++++++.+|.++.+.|++++|+..+++++..+|+++..+.-++.
T Consensus 5 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp THHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 789999999999999999999999999999999999999999999999999998776665553
No 106
>PRK15331 chaperone protein SicA; Provisional
Probab=98.18 E-value=1.1e-05 Score=88.58 Aligned_cols=101 Identities=10% Similarity=-0.028 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 043158 86 LALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVL 165 (1962)
Q Consensus 86 lAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL 165 (1962)
...+.+|--+++. |++++|...|+-....||.+++.|..||.++..+|+|+.|+.+|..|..+++++|...+..|.++
T Consensus 38 e~iY~~Ay~~y~~--Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~ 115 (165)
T PRK15331 38 DGLYAHAYEFYNQ--GRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQ 115 (165)
T ss_pred HHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHH
Confidence 4556667777888 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCH
Q 043158 166 IAIGDEVACLSVAELILRHWPSHS 189 (1962)
Q Consensus 166 ~~LGdyeeAL~~~~rALeLdPd~a 189 (1962)
..+|+...|..+|..++. .|.++
T Consensus 116 l~l~~~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 116 LLMRKAAKARQCFELVNE-RTEDE 138 (165)
T ss_pred HHhCCHHHHHHHHHHHHh-CcchH
Confidence 999999999999999998 47765
No 107
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.18 E-value=2.3e-05 Score=92.10 Aligned_cols=110 Identities=12% Similarity=0.061 Sum_probs=94.9
Q ss_pred cHHHHHHHHHHH-HHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 043158 32 HLTQTYHEGLLK-LQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCY 110 (1962)
Q Consensus 32 eAlalYqkAL~L-~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y 110 (1962)
.....|..|..+ ...|+|++|+..|+++++..|-... ...+++-+|.+++.. |++++|+..|
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~---------------a~~A~y~LG~~y~~~--g~~~~A~~~f 203 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTY---------------QPNANYWLGQLNYNK--GKKDDAAYYF 203 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcc---------------hHHHHHHHHHHHHHc--CCHHHHHHHH
Confidence 346789999988 6679999999999999986431100 125789999999999 9999999999
Q ss_pred HHHHHhCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHH
Q 043158 111 LQAVEIDTK---DSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCM 158 (1962)
Q Consensus 111 ~rALaLDP~---DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al 158 (1962)
.+++...|+ .+++|+.+|.++..+|+++.|+..|+++++..|+...+-
T Consensus 204 ~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 204 ASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 999999888 589999999999999999999999999999999987653
No 108
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.16 E-value=2.8e-05 Score=81.66 Aligned_cols=95 Identities=21% Similarity=0.100 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---CHHHHHH
Q 043158 87 ALKNLATVFLQQGSSHYESALRCYLQAVEIDTKD---SVVWNQLGTLACSMGLLSISRWAFEQGLLCSPN---NWNCMEK 160 (1962)
Q Consensus 87 AykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~D---aeaW~nLG~al~~LGr~eeAr~alErALeLdPd---~~~Al~n 160 (1962)
+++++|.++-.. |+.++|+..|++|++...++ ..++..+|..+..+|++++|...+++++.-.|+ +.....-
T Consensus 3 ~~~~~A~a~d~~--G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f 80 (120)
T PF12688_consen 3 ALYELAWAHDSL--GREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF 80 (120)
T ss_pred hHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence 578899999999 89999999999999987666 679999999999999999999999999999888 7788888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 043158 161 LLEVLIAIGDEVACLSVAELILR 183 (1962)
Q Consensus 161 Lg~aL~~LGdyeeAL~~~~rALe 183 (1962)
++.+|..+|++++|+..+-.++.
T Consensus 81 ~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 81 LALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999998877775
No 109
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.16 E-value=2.2e-05 Score=92.52 Aligned_cols=100 Identities=18% Similarity=0.199 Sum_probs=93.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcCCHHHHHHH
Q 043158 101 SHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSP---NNWNCMEKLLEVLIAIGDEVACLSV 177 (1962)
Q Consensus 101 Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdP---d~~~Al~nLg~aL~~LGdyeeAL~~ 177 (1962)
++.+-|+.+|+|.|++.-..+++++|+|.+++..++++.++.+|++|+.... .-++.|+|||.+....||..-|.++
T Consensus 338 ~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rc 417 (478)
T KOG1129|consen 338 NNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRC 417 (478)
T ss_pred CChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHH
Confidence 6799999999999999999999999999999999999999999999998764 3478899999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHhhh
Q 043158 178 AELILRHWPSHSRALHVKNTIEE 200 (1962)
Q Consensus 178 ~~rALeLdPd~a~Al~lk~~I~~ 200 (1962)
|+-||.-||+|.+++.+++.+..
T Consensus 418 frlaL~~d~~h~ealnNLavL~~ 440 (478)
T KOG1129|consen 418 FRLALTSDAQHGEALNNLAVLAA 440 (478)
T ss_pred HHHHhccCcchHHHHHhHHHHHh
Confidence 99999999999999999988744
No 110
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.14 E-value=8.9e-06 Score=75.92 Aligned_cols=72 Identities=15% Similarity=0.102 Sum_probs=67.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 043158 127 LGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSRALHVKNTI 198 (1962)
Q Consensus 127 LG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I 198 (1962)
|..++...++++.|+.++++++.++|+++.++..+|.++..+|++.+|+..++++++..|+++.+..++..+
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~l 72 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAML 72 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHhc
Confidence 467899999999999999999999999999999999999999999999999999999999999888776654
No 111
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.13 E-value=9.8e-05 Score=91.35 Aligned_cols=139 Identities=19% Similarity=0.162 Sum_probs=120.8
Q ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 043158 31 SHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCY 110 (1962)
Q Consensus 31 eeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y 110 (1962)
..+.....+|+.....|++++|.+...++.+..+ .+ ..++.-.|.++.++ |++++|.+.|
T Consensus 82 ~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~----~~--------------~~~~llaA~aa~~~--g~~~~A~~~l 141 (409)
T TIGR00540 82 RKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAA----EP--------------VLNLIKAAEAAQQR--GDEARANQHL 141 (409)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCC----CC--------------HHHHHHHHHHHHHC--CCHHHHHHHH
Confidence 3566778899999999999999999999877532 11 24555678888888 8999999999
Q ss_pred HHHHHhCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 043158 111 LQAVEIDTKDS-VVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHS 189 (1962)
Q Consensus 111 ~rALaLDP~Da-eaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a 189 (1962)
.+|++..|++. .+....+.++...|+++.|+..+++.++.+|+++.++.-++.++...|++++|...+.+.++..+.++
T Consensus 142 ~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~ 221 (409)
T TIGR00540 142 EEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDD 221 (409)
T ss_pred HHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCH
Confidence 99999999985 57777899999999999999999999999999999999999999999999999999999998754443
No 112
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=1.7e-05 Score=93.57 Aligned_cols=97 Identities=19% Similarity=0.171 Sum_probs=88.0
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHHH
Q 043158 102 HYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIG---DEVACLSVA 178 (1962)
Q Consensus 102 r~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LG---dyeeAL~~~ 178 (1962)
..++.+.-++.-|+.+|+|++-|..||.+++.+|++..|..+|++|+++.|++++.+..+|++|+... +-.++...+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 37788888999999999999999999999999999999999999999999999999999999987763 356778889
Q ss_pred HHHHHhCCCCHHHHHHHHHh
Q 043158 179 ELILRHWPSHSRALHVKNTI 198 (1962)
Q Consensus 179 ~rALeLdPd~a~Al~lk~~I 198 (1962)
++++++||++..++++++..
T Consensus 217 ~~al~~D~~~iral~lLA~~ 236 (287)
T COG4235 217 RQALALDPANIRALSLLAFA 236 (287)
T ss_pred HHHHhcCCccHHHHHHHHHH
Confidence 99999999999999998775
No 113
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=3.5e-05 Score=90.90 Aligned_cols=104 Identities=15% Similarity=0.188 Sum_probs=96.7
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcCCCCHHHHHH
Q 043158 84 RFLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMG---LLSISRWAFEQGLLCSPNNWNCMEK 160 (1962)
Q Consensus 84 ~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LG---r~eeAr~alErALeLdPd~~~Al~n 160 (1962)
+..-|.-||.+|+.. |++..|+.+|.+|++++|++++.+..+|.++.... ...+|...|++||++||+++.++.-
T Consensus 155 d~egW~~Lg~~ym~~--~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMAL--GRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHh--cchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 357899999999999 99999999999999999999999999999998875 4678999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 043158 161 LLEVLIAIGDEVACLSVAELILRHWPSHS 189 (1962)
Q Consensus 161 Lg~aL~~LGdyeeAL~~~~rALeLdPd~a 189 (1962)
||..+.+.|+|.+|+..++..|+..|.+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999999999877653
No 114
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.08 E-value=6.2e-06 Score=79.78 Aligned_cols=84 Identities=21% Similarity=0.283 Sum_probs=72.0
Q ss_pred HCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 043158 45 QSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVW 124 (1962)
Q Consensus 45 qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW 124 (1962)
.+|++++|+..|+++++..+.. + ....+.++|.++.+. |++++|+..+++ +..+|.++..+
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~------------~----~~~~~~~la~~~~~~--~~y~~A~~~~~~-~~~~~~~~~~~ 61 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTN------------P----NSAYLYNLAQCYFQQ--GKYEEAIELLQK-LKLDPSNPDIH 61 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGT------------H----HHHHHHHHHHHHHHT--THHHHHHHHHHC-HTHHHCHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCC------------h----hHHHHHHHHHHHHHC--CCHHHHHHHHHH-hCCCCCCHHHH
Confidence 3689999999999999864311 0 235788899999999 999999999999 99999999999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHH
Q 043158 125 NQLGTLACSMGLLSISRWAFEQG 147 (1962)
Q Consensus 125 ~nLG~al~~LGr~eeAr~alErA 147 (1962)
+.+|.++..+|++++|+.+|++|
T Consensus 62 ~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 62 YLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHhcC
Confidence 99999999999999999999986
No 115
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.08 E-value=3.7e-05 Score=94.86 Aligned_cols=114 Identities=12% Similarity=0.089 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 043158 85 FLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEV 164 (1962)
Q Consensus 85 ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~a 164 (1962)
..+++..+..+++. |.+++|+..+...+...|+++-+|-..|.++...++..+|...|++++.++|+.+..+.++|.+
T Consensus 306 ~aa~YG~A~~~~~~--~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~a 383 (484)
T COG4783 306 LAAQYGRALQTYLA--GQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQA 383 (484)
T ss_pred hHHHHHHHHHHHHh--cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 46888889999998 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhh
Q 043158 165 LIAIGDEVACLSVAELILRHWPSHSRALHVKNTIEE 200 (1962)
Q Consensus 165 L~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I~~ 200 (1962)
|...|++.+|+..+.+.+.-+|+++..|.+++.-+.
T Consensus 384 ll~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~ 419 (484)
T COG4783 384 LLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYA 419 (484)
T ss_pred HHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHH
Confidence 999999999999999999999999999999988755
No 116
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.08 E-value=0.0001 Score=83.20 Aligned_cols=144 Identities=18% Similarity=0.195 Sum_probs=112.1
Q ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 043158 31 SHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCY 110 (1962)
Q Consensus 31 eeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y 110 (1962)
..+..+|+.|..+.+.|+|++|+..|+++...-|.... -..+...+|.++... |++++|+..|
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~---------------a~~A~l~la~a~y~~--~~y~~A~~~~ 65 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPY---------------APQAQLMLAYAYYKQ--GDYEEAIAAY 65 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTT---------------HHHHHHHHHHHHHHT--T-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChH---------------HHHHHHHHHHHHHHc--CCHHHHHHHH
Confidence 45678999999999999999999999999974331111 125788999999999 8999999999
Q ss_pred HHHHHhCCCCH---HHHHHHHHHHHHc-----------CChHHHHHHHHHHHhcCCCCHHH-----------------HH
Q 043158 111 LQAVEIDTKDS---VVWNQLGTLACSM-----------GLLSISRWAFEQGLLCSPNNWNC-----------------ME 159 (1962)
Q Consensus 111 ~rALaLDP~Da---eaW~nLG~al~~L-----------Gr~eeAr~alErALeLdPd~~~A-----------------l~ 159 (1962)
.+-+...|+++ .+++.+|.++..+ +....|+..|+..+..-|+..-+ -.
T Consensus 66 ~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~ 145 (203)
T PF13525_consen 66 ERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHEL 145 (203)
T ss_dssp HHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999975 6899999987665 34568999999999999998443 14
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 043158 160 KLLEVLIAIGDEVACLSVAELILRHWPSHSRA 191 (1962)
Q Consensus 160 nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~A 191 (1962)
..|..+...|.|.+|+..++.+++.-|+...+
T Consensus 146 ~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~ 177 (203)
T PF13525_consen 146 YIARFYYKRGKYKAAIIRFQYVIENYPDTPAA 177 (203)
T ss_dssp HHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCCCchH
Confidence 45566788899999999999999999998654
No 117
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.08 E-value=3.4e-05 Score=102.43 Aligned_cols=134 Identities=11% Similarity=0.043 Sum_probs=106.6
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHH-----
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYE----- 104 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~e----- 104 (1962)
+....++.+.+-.+...|++++|.+.++++++..| +. ..+|+-+|.++.+. +++.
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P-------~~-----------i~~yy~~G~l~~q~--~~~~~~~lv 87 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHK-------KS-----------ISALYISGILSLSR--RPLNDSNLL 87 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-------cc-----------eehHHHHHHHHHhh--cchhhhhhh
Confidence 44566777777788899999999999999998654 11 13344444444444 3333
Q ss_pred ------------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 043158 105 ------------SALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEV 172 (1962)
Q Consensus 105 ------------EALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdye 172 (1962)
.++++|...+...|.+-.|++.||.||.++|+.++|..+|+++|++||+++.++.|+|..|... +.+
T Consensus 88 ~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 88 NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHH
Confidence 5566666666666666699999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHh
Q 043158 173 ACLSVAELILRH 184 (1962)
Q Consensus 173 eAL~~~~rALeL 184 (1962)
.|..++.+|++.
T Consensus 167 KA~~m~~KAV~~ 178 (906)
T PRK14720 167 KAITYLKKAIYR 178 (906)
T ss_pred HHHHHHHHHHHH
Confidence 999999999887
No 118
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.05 E-value=4.7e-05 Score=79.98 Aligned_cols=99 Identities=18% Similarity=0.095 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 043158 34 TQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQA 113 (1962)
Q Consensus 34 lalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rA 113 (1962)
..+|+.|..+...|+.++|+..|+++++..... . ....++.++|..+... |++++|+..++++
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~-----------~----~~~~a~i~lastlr~L--G~~deA~~~L~~~ 64 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSG-----------A----DRRRALIQLASTLRNL--GRYDEALALLEEA 64 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-----------h----HHHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Confidence 357999999999999999999999999852200 0 1246888999999999 9999999999999
Q ss_pred HHhCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 043158 114 VEIDTK---DSVVWNQLGTLACSMGLLSISRWAFEQGLL 149 (1962)
Q Consensus 114 LaLDP~---DaeaW~nLG~al~~LGr~eeAr~alErALe 149 (1962)
+...|+ +..++..++.++..+|+.++|+..+-.++.
T Consensus 65 ~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 65 LEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999898 889999999999999999999999988885
No 119
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.05 E-value=0.00021 Score=83.22 Aligned_cols=142 Identities=15% Similarity=0.141 Sum_probs=115.1
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 043158 32 HLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYL 111 (1962)
Q Consensus 32 eAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~ 111 (1962)
.+..+|..|..+.+.|++++|++.|++++...|.... ...+..++|.++... +++++|+..|+
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~---------------a~~a~l~la~ayy~~--~~y~~A~~~~e 93 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPY---------------SQQVQLDLIYAYYKN--ADLPLAQAAID 93 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH---------------HHHHHHHHHHHHHhc--CCHHHHHHHHH
Confidence 4556899999999999999999999999986442210 135678999999999 89999999999
Q ss_pred HHHHhCCCC---HHHHHHHHHHHHHcCC------------------hHHHHHHHHHHHhcCCCCHH---HH---------
Q 043158 112 QAVEIDTKD---SVVWNQLGTLACSMGL------------------LSISRWAFEQGLLCSPNNWN---CM--------- 158 (1962)
Q Consensus 112 rALaLDP~D---aeaW~nLG~al~~LGr------------------~eeAr~alErALeLdPd~~~---Al--------- 158 (1962)
+.+...|++ +.+++.+|.+...++. ...|+..|++.+..-|+..- |.
T Consensus 94 ~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~ 173 (243)
T PRK10866 94 RFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDR 173 (243)
T ss_pred HHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH
Confidence 999999988 5789999988766541 35788999999999998733 22
Q ss_pred -----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 043158 159 -----EKLLEVLIAIGDEVACLSVAELILRHWPSHSR 190 (1962)
Q Consensus 159 -----~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~ 190 (1962)
...|.-+.+.|.|..|+.-++.+++.-|+.+.
T Consensus 174 la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~ 210 (243)
T PRK10866 174 LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQA 210 (243)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCch
Confidence 33345578889999999999999999888753
No 120
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.05 E-value=5.9e-05 Score=93.23 Aligned_cols=112 Identities=23% Similarity=0.239 Sum_probs=101.0
Q ss_pred HCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 043158 45 QSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVW 124 (1962)
Q Consensus 45 qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW 124 (1962)
..+++++|+..++++.+..| .+..-++.++... ++-.+|+..+.++|...|.+++++
T Consensus 181 ~t~~~~~ai~lle~L~~~~p---------------------ev~~~LA~v~l~~--~~E~~AI~ll~~aL~~~p~d~~LL 237 (395)
T PF09295_consen 181 LTQRYDEAIELLEKLRERDP---------------------EVAVLLARVYLLM--NEEVEAIRLLNEALKENPQDSELL 237 (395)
T ss_pred hcccHHHHHHHHHHHHhcCC---------------------cHHHHHHHHHHhc--CcHHHHHHHHHHHHHhCCCCHHHH
Confidence 44899999999999987643 2334478888877 789999999999999999999999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 043158 125 NQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAE 179 (1962)
Q Consensus 125 ~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~ 179 (1962)
..-+..+...++++.|+.+.++|+.+.|+...+|..|+.+|..+|+++.|+..+.
T Consensus 238 ~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 238 NLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999998654
No 121
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.04 E-value=5.2e-05 Score=98.37 Aligned_cols=114 Identities=11% Similarity=0.178 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 043158 85 FLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEV 164 (1962)
Q Consensus 85 ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~a 164 (1962)
.......|+.+..+ |++++|++.+.+++..+|.++.+|+-||.++..+|+...|..+.-.|-.++|.+++-|..++..
T Consensus 139 l~~ll~eAN~lfar--g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladl 216 (895)
T KOG2076|consen 139 LRQLLGEANNLFAR--GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADL 216 (895)
T ss_pred HHHHHHHHHHHHHh--CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 45566777888888 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhh
Q 043158 165 LIAIGDEVACLSVAELILRHWPSHSRALHVKNTIEE 200 (1962)
Q Consensus 165 L~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I~~ 200 (1962)
..++|.+..|.-||.+|+..+|.+.+-.+-+..+.+
T Consensus 217 s~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~ 252 (895)
T KOG2076|consen 217 SEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQ 252 (895)
T ss_pred HHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 999999999999999999999999776666655544
No 122
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.03 E-value=2.8e-05 Score=99.44 Aligned_cols=112 Identities=24% Similarity=0.254 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 043158 87 ALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLI 166 (1962)
Q Consensus 87 AykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~ 166 (1962)
.|-..|.++... +..++|.-|+.+|-.++|-.+..|+..|.++...|...+|..+|..|+.+||+|++++..+|.++.
T Consensus 652 lwllaa~~~~~~--~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ll 729 (799)
T KOG4162|consen 652 LWLLAADLFLLS--GNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLL 729 (799)
T ss_pred HHHHHHHHHHhc--CCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 344566666666 889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHhhh
Q 043158 167 AIGDEVACLS--VAELILRHWPSHSRALHVKNTIEE 200 (1962)
Q Consensus 167 ~LGdyeeAL~--~~~rALeLdPd~a~Al~lk~~I~~ 200 (1962)
+.|+..-|.. ....|+++||.+++||+.++.+..
T Consensus 730 e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k 765 (799)
T KOG4162|consen 730 ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFK 765 (799)
T ss_pred HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 9999888888 889999999999999999988865
No 123
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.03 E-value=3.5e-05 Score=97.55 Aligned_cols=136 Identities=18% Similarity=0.178 Sum_probs=110.5
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC
Q 043158 38 HEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQAVEID 117 (1962)
Q Consensus 38 qkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLD 117 (1962)
..|..|..+++|.+|+.+|+++|.... ...|-...+ -..++.|||.+|... |++++|..++.+|+.+-
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e-------~~~G~~h~~---va~~l~nLa~ly~~~--GKf~EA~~~~e~Al~I~ 313 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIRE-------EVFGEDHPA---VAATLNNLAVLYYKQ--GKFAEAEEYCERALEIY 313 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHH-------HhcCCCCHH---HHHHHHHHHHHHhcc--CChHHHHHHHHHHHHHH
Confidence 367778889999999999999998631 000101111 247899999999998 89999999999999764
Q ss_pred --------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-----CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043158 118 --------TKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCS-----PNN---WNCMEKLLEVLIAIGDEVACLSVAELI 181 (1962)
Q Consensus 118 --------P~DaeaW~nLG~al~~LGr~eeAr~alErALeLd-----Pd~---~~Al~nLg~aL~~LGdyeeAL~~~~rA 181 (1962)
|.=+..+.++|.++..++++++|...|.+++++- ++| +....|||.+++.+|+|.+|...|++|
T Consensus 314 ~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~a 393 (508)
T KOG1840|consen 314 EKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKA 393 (508)
T ss_pred HHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 3346788999999999999999999999999854 333 566899999999999999999999999
Q ss_pred HHhC
Q 043158 182 LRHW 185 (1962)
Q Consensus 182 LeLd 185 (1962)
+.+.
T Consensus 394 i~~~ 397 (508)
T KOG1840|consen 394 IQIL 397 (508)
T ss_pred HHHH
Confidence 9873
No 124
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.99 E-value=1.3e-05 Score=73.71 Aligned_cols=68 Identities=16% Similarity=0.126 Sum_probs=62.1
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 043158 131 ACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSRALHVKNTI 198 (1962)
Q Consensus 131 l~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I 198 (1962)
+...|++++|+..|++++..+|++++++..+|.++...|++++|...+++++..+|+++..+.+++.|
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 46789999999999999999999999999999999999999999999999999999998877776653
No 125
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.99 E-value=1.6e-05 Score=93.85 Aligned_cols=108 Identities=13% Similarity=0.179 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 043158 85 FLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEV 164 (1962)
Q Consensus 85 ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~a 164 (1962)
.+-.+-.|+-|+.+ |.|++|++||.++++.+|.++..+.|.+.+|.++.+|..|..-++.|+.+|-.+..|+.+.+.+
T Consensus 97 ~SEiKE~GN~yFKQ--gKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~A 174 (536)
T KOG4648|consen 97 ASEIKERGNTYFKQ--GKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQA 174 (536)
T ss_pred hHHHHHhhhhhhhc--cchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHH
Confidence 34568899999999 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 043158 165 LIAIGDEVACLSVAELILRHWPSHSRALHV 194 (1962)
Q Consensus 165 L~~LGdyeeAL~~~~rALeLdPd~a~Al~l 194 (1962)
-..||..++|-.-|+.+|++.|..-+..-.
T Consensus 175 R~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~ 204 (536)
T KOG4648|consen 175 RESLGNNMEAKKDCETVLALEPKNIELKKS 204 (536)
T ss_pred HHHHhhHHHHHHhHHHHHhhCcccHHHHHH
Confidence 999999999999999999999997654333
No 126
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.99 E-value=4.4e-05 Score=96.26 Aligned_cols=140 Identities=19% Similarity=0.210 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 043158 34 TQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQA 113 (1962)
Q Consensus 34 lalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rA 113 (1962)
..+|.+++.....++|...+.+.+++|+-.+ + +..++--.|..+..+ |+-++|.++-+.+
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~-------e-----------HgeslAmkGL~L~~l--g~~~ea~~~vr~g 67 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKFP-------E-----------HGESLAMKGLTLNCL--GKKEEAYELVRLG 67 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCC-------c-----------cchhHHhccchhhcc--cchHHHHHHHHHH
Confidence 3589999999999999999999999997422 1 113344567777777 8999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 043158 114 VEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSRALH 193 (1962)
Q Consensus 114 LaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~Al~ 193 (1962)
+..|+.....|.-+|.+++.-.+|++|+.||+.||.++|++...|..|+.+..++|+|+.....-.+.|+++|++-.-|.
T Consensus 68 lr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~ 147 (700)
T KOG1156|consen 68 LRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWI 147 (700)
T ss_pred hccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998999999998865553
No 127
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.98 E-value=3.1e-05 Score=85.89 Aligned_cols=93 Identities=13% Similarity=0.043 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--
Q 043158 103 YESALRCYLQAVEIDTKDSVVWNQLGTLACSMGL----------LSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGD-- 170 (1962)
Q Consensus 103 ~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr----------~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGd-- 170 (1962)
++.|.+.++.+...+|.|++.+++-|.++..+.+ +++|+.-|++||.++|+..+++.++|+++..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 7889999999999999999999999999988844 4678888999999999999999999999987754
Q ss_pred ---------HHHHHHHHHHHHHhCCCCHHHHHHH
Q 043158 171 ---------EVACLSVAELILRHWPSHSRALHVK 195 (1962)
Q Consensus 171 ---------yeeAL~~~~rALeLdPd~a~Al~lk 195 (1962)
|+.|..+|++|...+|++......+
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksL 120 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSL 120 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 7889999999999999987544333
No 128
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.95 E-value=0.00018 Score=85.80 Aligned_cols=103 Identities=19% Similarity=0.217 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 043158 85 FLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEV 164 (1962)
Q Consensus 85 ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~a 164 (1962)
+.+|.|+.. |.+.+.+|.-.|++..+..|..+.+++.+|.+.+.+|++++|...+++|+..+|++++++.|++.+
T Consensus 170 a~awv~l~~-----g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~ 244 (290)
T PF04733_consen 170 AEAWVNLAT-----GGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVC 244 (290)
T ss_dssp HHHHHHHHH-----TTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHH
T ss_pred HHHHHHHHh-----CchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 455655443 435699999999998888788999999999999999999999999999999999999999999999
Q ss_pred HHHcCCH-HHHHHHHHHHHHhCCCCHHHH
Q 043158 165 LIAIGDE-VACLSVAELILRHWPSHSRAL 192 (1962)
Q Consensus 165 L~~LGdy-eeAL~~~~rALeLdPd~a~Al 192 (1962)
...+|+. +.+.+++.+.-..+|+|+...
T Consensus 245 ~~~~gk~~~~~~~~l~qL~~~~p~h~~~~ 273 (290)
T PF04733_consen 245 SLHLGKPTEAAERYLSQLKQSNPNHPLVK 273 (290)
T ss_dssp HHHTT-TCHHHHHHHHHCHHHTTTSHHHH
T ss_pred HHHhCCChhHHHHHHHHHHHhCCCChHHH
Confidence 9999998 555567777777888887433
No 129
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.89 E-value=0.00013 Score=93.08 Aligned_cols=112 Identities=10% Similarity=-0.056 Sum_probs=89.9
Q ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHhc--CCCCHH
Q 043158 88 LKNLATVFLQQG-SSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMG--------LLSISRWAFEQGLLC--SPNNWN 156 (1962)
Q Consensus 88 ykNLG~lLl~~g-~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LG--------r~eeAr~alErALeL--dPd~~~ 156 (1962)
++-.|.-+...+ .+++..|+++|++|+++||+++.+|-.++.++.... +...|..+.++++.+ +|..+.
T Consensus 342 ~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~ 421 (517)
T PRK10153 342 LFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPR 421 (517)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChH
Confidence 344555554441 134889999999999999999999999988876642 345677777887775 788889
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhh
Q 043158 157 CMEKLLEVLIAIGDEVACLSVAELILRHWPSHSRALHVKNTIEE 200 (1962)
Q Consensus 157 Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I~~ 200 (1962)
++..+|.+....|++++|...+++|++++|+ ..++.+++.+..
T Consensus 422 ~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~ 464 (517)
T PRK10153 422 IYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYE 464 (517)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHH
Confidence 9999999998999999999999999999994 788888877643
No 130
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.89 E-value=0.00019 Score=76.12 Aligned_cols=102 Identities=22% Similarity=0.141 Sum_probs=86.1
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRC 109 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~ 109 (1962)
.+...++=.+|..+...|+++.|++.|.++|..-| . +.++|+|+++++.-. |+.++|++.
T Consensus 40 ~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P-------~-----------raSayNNRAQa~RLq--~~~e~ALdD 99 (175)
T KOG4555|consen 40 IKASRELELKAIALAEAGDLDGALELFGQALCLAP-------E-----------RASAYNNRAQALRLQ--GDDEEALDD 99 (175)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcc-------c-----------chHhhccHHHHHHHc--CChHHHHHH
Confidence 44455666789999999999999999999998632 1 358999999999988 899999999
Q ss_pred HHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 043158 110 YLQAVEIDTKD----SVVWNQLGTLACSMGLLSISRWAFEQGLLCS 151 (1962)
Q Consensus 110 y~rALaLDP~D----aeaW~nLG~al~~LGr~eeAr~alErALeLd 151 (1962)
+.+||++..+- -.++...|.+++.+|+.+.|+.-|+.|-++-
T Consensus 100 Ln~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 100 LNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence 99999997654 3578889999999999999999999887754
No 131
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.88 E-value=0.0001 Score=93.41 Aligned_cols=139 Identities=17% Similarity=0.150 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 043158 34 TQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQA 113 (1962)
Q Consensus 34 lalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rA 113 (1962)
...-..|..+..+|+|+.|+..|++++..- . ...+..... -.....++|.+|... +++.+|+..|.+|
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l------~-k~~G~~hl~---va~~l~~~a~~y~~~--~k~~eAv~ly~~A 267 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRIL------E-KTSGLKHLV---VASMLNILALVYRSL--GKYDEAVNLYEEA 267 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHH------H-HccCccCHH---HHHHHHHHHHHHHHh--ccHHHHHHHHHHH
Confidence 344458888999999999999999999741 0 100111111 134555799999999 8999999999999
Q ss_pred HHhC--------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHHHHHH
Q 043158 114 VEID--------TKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCS--------PNNWNCMEKLLEVLIAIGDEVACLSV 177 (1962)
Q Consensus 114 LaLD--------P~DaeaW~nLG~al~~LGr~eeAr~alErALeLd--------Pd~~~Al~nLg~aL~~LGdyeeAL~~ 177 (1962)
|++- |.-+.++.|||.+|...|++++|..++++|+++- |.-+..+.+++.++...+++++|..+
T Consensus 268 L~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l 347 (508)
T KOG1840|consen 268 LTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKL 347 (508)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHH
Confidence 9863 4447889999999999999999999999999864 33345578889999999999999999
Q ss_pred HHHHHHh
Q 043158 178 AELILRH 184 (1962)
Q Consensus 178 ~~rALeL 184 (1962)
+++++++
T Consensus 348 ~q~al~i 354 (508)
T KOG1840|consen 348 LQKALKI 354 (508)
T ss_pred HHHHHHH
Confidence 9998887
No 132
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.83 E-value=0.00013 Score=77.80 Aligned_cols=98 Identities=26% Similarity=0.338 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 043158 33 LTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQ 112 (1962)
Q Consensus 33 AlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~r 112 (1962)
..+.+..|-.+...|++++|.+.|+.++...+ + ..+...+...+|.++... |++++|+..+..
T Consensus 48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~-------d--------~~l~~~a~l~LA~~~~~~--~~~d~Al~~L~~ 110 (145)
T PF09976_consen 48 ALAALQLAKAAYEQGDYDEAKAALEKALANAP-------D--------PELKPLARLRLARILLQQ--GQYDEALATLQQ 110 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC-------C--------HHHHHHHHHHHHHHHHHc--CCHHHHHHHHHh
Confidence 46778899999999999999999999997532 1 112457888999999999 899999999965
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 043158 113 AVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGL 148 (1962)
Q Consensus 113 ALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErAL 148 (1962)
+.-.+-.+.++..+|.++.+.|++++|+.+|++||
T Consensus 111 -~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 111 -IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred -ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 55566678999999999999999999999999986
No 133
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.81 E-value=0.0002 Score=80.46 Aligned_cols=121 Identities=14% Similarity=0.148 Sum_probs=84.1
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRC 109 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~ 109 (1962)
.+++..+-..|..+...|.|++|...|.++|.+-|.. + -..+...|-|+|.++..+ +..+.|+..
T Consensus 92 ~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~-----------~--~e~rsIly~Nraaa~iKl--~k~e~aI~d 156 (271)
T KOG4234|consen 92 IEKADSLKKEGNELFKNGDYEEANSKYQEALESCPST-----------S--TEERSILYSNRAAALIKL--RKWESAIED 156 (271)
T ss_pred HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccc-----------c--HHHHHHHHhhhHHHHHHh--hhHHHHHHH
Confidence 4455556666777777788888888888887752200 0 112445667788877777 677888888
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 043158 110 YLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVL 165 (1962)
Q Consensus 110 y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL 165 (1962)
..+|+++.|+.-.+..+.+.+|..+..|++|+.-|.+.++.+|....+....+.+=
T Consensus 157 csKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~ 212 (271)
T KOG4234|consen 157 CSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLP 212 (271)
T ss_pred HHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcC
Confidence 88888888888777777788888888888888888888888877666655444433
No 134
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.00056 Score=83.03 Aligned_cols=169 Identities=14% Similarity=0.062 Sum_probs=126.7
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhc-c---CC--CCCchhhhHH----------hHHHHHHHH-HH
Q 043158 32 HLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQA-A---DG--KSSDGHLLQL----------RFLALKNLA-TV 94 (1962)
Q Consensus 32 eAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~-~---d~--~~s~s~lLqL----------~ylAykNLG-~l 94 (1962)
...++.-+|-.|.+.||.++|+-+|+.+..+.|..-... + -+ .+....+..+ .+.++.-+| .+
T Consensus 333 ~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V 412 (564)
T KOG1174|consen 333 NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLV 412 (564)
T ss_pred cchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhccee
Confidence 445677889999999999999999999988754110000 0 00 0011111111 122333333 22
Q ss_pred HHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 043158 95 FLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVAC 174 (1962)
Q Consensus 95 Ll~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeA 174 (1962)
++.-. .--++|-..|+++|.+.|....+-..++.++..-|++++++..+|++|...||. ..+..||.++...+.+.+|
T Consensus 413 ~~~dp-~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~a 490 (564)
T KOG1174|consen 413 LFPDP-RMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKA 490 (564)
T ss_pred eccCc-hhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHH
Confidence 22110 125889999999999999999999999999999999999999999999998885 4578999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHhhhcC
Q 043158 175 LSVAELILRHWPSHSRALHVKNTIEETE 202 (1962)
Q Consensus 175 L~~~~rALeLdPd~a~Al~lk~~I~~ad 202 (1962)
+.+|..||.+||++..++--+..++..+
T Consensus 491 m~~y~~ALr~dP~~~~sl~Gl~~lEK~~ 518 (564)
T KOG1174|consen 491 MEYYYKALRQDPKSKRTLRGLRLLEKSD 518 (564)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHhcc
Confidence 9999999999999999888888876644
No 135
>PRK11906 transcriptional regulator; Provisional
Probab=97.79 E-value=0.00017 Score=89.64 Aligned_cols=111 Identities=8% Similarity=-0.088 Sum_probs=96.5
Q ss_pred HHHHHHHHHcCC-CCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHc---------CChHHHHHHHHHHHhcCCCCH
Q 043158 89 KNLATVFLQQGS-SHYESALRCYLQAV---EIDTKDSVVWNQLGTLACSM---------GLLSISRWAFEQGLLCSPNNW 155 (1962)
Q Consensus 89 kNLG~lLl~~g~-Gr~eEALe~y~rAL---aLDP~DaeaW~nLG~al~~L---------Gr~eeAr~alErALeLdPd~~ 155 (1962)
+.+|...+..+. ...+.|+.+|.+|+ ++||+.+.++..++.++... ....+|+..-++|+++||+++
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da 338 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG 338 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence 556666654421 34788999999999 99999999999999888765 245678899999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhh
Q 043158 156 NCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSRALHVKNTIE 199 (1962)
Q Consensus 156 ~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I~ 199 (1962)
.|+..+|.++.-.|+++.|...+++|+.++|+.+.+++..+.+.
T Consensus 339 ~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~ 382 (458)
T PRK11906 339 KILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVH 382 (458)
T ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988863
No 136
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.79 E-value=0.00023 Score=83.32 Aligned_cols=110 Identities=18% Similarity=0.141 Sum_probs=86.6
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 043158 32 HLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYL 111 (1962)
Q Consensus 32 eAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~ 111 (1962)
.+...|+.|+.+.+.|+|.+|...|+.-++.-|-... -..|++=||.+++.+ |++++|...|.
T Consensus 140 ~~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~---------------~~nA~yWLGe~~y~q--g~y~~Aa~~f~ 202 (262)
T COG1729 140 PATKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTY---------------TPNAYYWLGESLYAQ--GDYEDAAYIFA 202 (262)
T ss_pred chhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcc---------------cchhHHHHHHHHHhc--ccchHHHHHHH
Confidence 4456999999999999999999999999875321100 125677888888888 88888888888
Q ss_pred HHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHH
Q 043158 112 QAVEIDTKD---SVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCM 158 (1962)
Q Consensus 112 rALaLDP~D---aeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al 158 (1962)
.++.-.|+. |++++.||.++.++|+.++|+..|+++++.=|+...+.
T Consensus 203 ~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 203 RVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 888887765 57788888888888888888888888888888776654
No 137
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.77 E-value=0.00071 Score=78.53 Aligned_cols=131 Identities=18% Similarity=0.094 Sum_probs=111.0
Q ss_pred HHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC
Q 043158 41 LLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKD 120 (1962)
Q Consensus 41 L~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~D 120 (1962)
+..+-.|+.+-|..+++++-+.-| . .+..-+--|+.+... |++++|++.|...|+-||.|
T Consensus 60 IAAld~~~~~lAq~C~~~L~~~fp-------~-----------S~RV~~lkam~lEa~--~~~~~A~e~y~~lL~ddpt~ 119 (289)
T KOG3060|consen 60 IAALDTGRDDLAQKCINQLRDRFP-------G-----------SKRVGKLKAMLLEAT--GNYKEAIEYYESLLEDDPTD 119 (289)
T ss_pred HHHHHhcchHHHHHHHHHHHHhCC-------C-----------ChhHHHHHHHHHHHh--hchhhHHHHHHHHhccCcch
Confidence 334455777777777777654211 1 123344567778877 89999999999999999999
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 043158 121 SVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSRA 191 (1962)
Q Consensus 121 aeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~A 191 (1962)
...+-+.-.++..+|+.-+|+..+-.-|+.-|++++||..|+.++..+|+|+.|.-|++..+-+.|.++.-
T Consensus 120 ~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~ 190 (289)
T KOG3060|consen 120 TVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLY 190 (289)
T ss_pred hHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998743
No 138
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.75 E-value=0.00043 Score=92.43 Aligned_cols=169 Identities=14% Similarity=0.125 Sum_probs=125.9
Q ss_pred hhhcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCC-CCchhhhHH--hHHHHHHHHHHHHHcCC
Q 043158 24 EAQARPESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGK-SSDGHLLQL--RFLALKNLATVFLQQGS 100 (1962)
Q Consensus 24 EaQa~~eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~-~s~s~lLqL--~ylAykNLG~lLl~~g~ 100 (1962)
++....+.....+|..|..+.+.+++.+|... .++....-. ..+ ... ..+..++.. +-.|++.||.+|-.+
T Consensus 56 ~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~-~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~-- 129 (906)
T PRK14720 56 EHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQN-LKW-AIVEHICDKILLYGENKLALRTLAEAYAKL-- 129 (906)
T ss_pred HHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccc-cch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHc--
Confidence 33333477888899999999999999999877 776642211 000 000 000111111 125899999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--------------------cCCCCHHHH--
Q 043158 101 SHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLL--------------------CSPNNWNCM-- 158 (1962)
Q Consensus 101 Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALe--------------------LdPd~~~Al-- 158 (1962)
|+.++|.+.|+++|++||+|+.+.+++|..+... +++.|+..+.+|+. .+|++.+.+
T Consensus 130 g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~ 208 (906)
T PRK14720 130 NENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLR 208 (906)
T ss_pred CChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccchHHHH
Confidence 8999999999999999999999999999999999 99999999999988 445554442
Q ss_pred ------HHHH------------HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhh
Q 043158 159 ------EKLL------------EVLIAIGDEVACLSVAELILRHWPSHSRALHVKNTIE 199 (1962)
Q Consensus 159 ------~nLg------------~aL~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I~ 199 (1962)
..++ ..+...+++++++..++.+|+++|.+..|++-+...+
T Consensus 209 i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y 267 (906)
T PRK14720 209 IERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFY 267 (906)
T ss_pred HHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHH
Confidence 2222 4566778999999999999999999998877665543
No 139
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.73 E-value=0.00029 Score=92.03 Aligned_cols=114 Identities=18% Similarity=0.150 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------------------------------
Q 043158 85 FLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSM------------------------------ 134 (1962)
Q Consensus 85 ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~L------------------------------ 134 (1962)
..+|.-||..|.+. .+...|..||.+|.++||+|+++|-.++..+.+.
T Consensus 492 apaf~~LG~iYrd~--~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG 569 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDS--DDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRG 569 (1238)
T ss_pred hHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcc
Confidence 46888899999988 7888899999999999999988877666655544
Q ss_pred ------CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhh
Q 043158 135 ------GLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSRALHVKNTIEE 200 (1962)
Q Consensus 135 ------Gr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I~~ 200 (1962)
+++..|+..|+.|++.+|.+..+|..||.+|..-|+|..|+..|.+|..++|.+.-+.+..+.+..
T Consensus 570 ~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ec 641 (1238)
T KOG1127|consen 570 PYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMEC 641 (1238)
T ss_pred ccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHH
Confidence 455666777888888999999999999999999999999999999999999998877777766644
No 140
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.73 E-value=0.00024 Score=89.95 Aligned_cols=137 Identities=18% Similarity=0.161 Sum_probs=121.5
Q ss_pred CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHH
Q 043158 29 PESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALR 108 (1962)
Q Consensus 29 ~eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe 108 (1962)
.++....+--+|+.|...|+-++|.+..+..+..++ . .+-.|+-+|.++..- .+|++|+.
T Consensus 37 ~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~-------~-----------S~vCwHv~gl~~R~d--K~Y~eaiK 96 (700)
T KOG1156|consen 37 FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-------K-----------SHVCWHVLGLLQRSD--KKYDEAIK 96 (700)
T ss_pred CCccchhHHhccchhhcccchHHHHHHHHHHhccCc-------c-----------cchhHHHHHHHHhhh--hhHHHHHH
Confidence 356667777889999999999999999999987543 1 136899999999887 78999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 043158 109 CYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHW 185 (1962)
Q Consensus 109 ~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLd 185 (1962)
||+.||.++|++-.+|+.|+.+..++|+++.....-.+-|+++|.+...|...+.+...+|+|..|....+......
T Consensus 97 cy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 97 CYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999998776555443
No 141
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.73 E-value=0.00033 Score=78.76 Aligned_cols=107 Identities=17% Similarity=0.153 Sum_probs=98.5
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHH
Q 043158 84 RFLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDS-----VVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCM 158 (1962)
Q Consensus 84 ~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~Da-----eaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al 158 (1962)
....++--|+-++.. |+|++|..-|.+||++-|..+ -++.|.|.++++++..+.|+....+||+++|.+-.|+
T Consensus 94 kad~lK~EGN~~F~n--gdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl 171 (271)
T KOG4234|consen 94 KADSLKKEGNELFKN--GDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKAL 171 (271)
T ss_pred HHHHHHHHHHHhhhc--ccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHH
Confidence 345677788888888 999999999999999999874 5788999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 043158 159 EKLLEVLIAIGDEVACLSVAELILRHWPSHSRAL 192 (1962)
Q Consensus 159 ~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~Al 192 (1962)
.+.+.++-.+..|++|+.-|.+.++++|....|.
T Consensus 172 ~RRAeayek~ek~eealeDyKki~E~dPs~~ear 205 (271)
T KOG4234|consen 172 ERRAEAYEKMEKYEEALEDYKKILESDPSRREAR 205 (271)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHH
Confidence 9999999999999999999999999999977554
No 142
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.00071 Score=82.20 Aligned_cols=163 Identities=13% Similarity=0.106 Sum_probs=130.7
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccch---hc----cCCCC------CchhhhHH---hHHHHHHHHHHH
Q 043158 32 HLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANA---QA----ADGKS------SDGHLLQL---RFLALKNLATVF 95 (1962)
Q Consensus 32 eAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a---~~----~d~~~------s~s~lLqL---~ylAykNLG~lL 95 (1962)
+-.-+-..|-.+...|++++|+..|+++.-.+|..-- .. +..++ ....++.. ...-|.=.|+++
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l 310 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLL 310 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhh
Confidence 3344556788888999999999999999987642100 00 00000 11111111 124566677777
Q ss_pred HHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 043158 96 LQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACL 175 (1962)
Q Consensus 96 l~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL 175 (1962)
... .++..|+-+-.++++.+|++..++...|+++..+|+..+|+-+|+.|..+.|-..+++..|-..|...|+..+|.
T Consensus 311 ~~~--K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~ 388 (564)
T KOG1174|consen 311 YDE--KKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEAN 388 (564)
T ss_pred hhh--hhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHH
Confidence 777 789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHH
Q 043158 176 SVAELILRHWPSHSRALHVKN 196 (1962)
Q Consensus 176 ~~~~rALeLdPd~a~Al~lk~ 196 (1962)
...+-+.+.-|..++++-+.+
T Consensus 389 ~~An~~~~~~~~sA~~LtL~g 409 (564)
T KOG1174|consen 389 ALANWTIRLFQNSARSLTLFG 409 (564)
T ss_pred HHHHHHHHHhhcchhhhhhhc
Confidence 999999999999999887664
No 143
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.70 E-value=0.001 Score=84.12 Aligned_cols=204 Identities=18% Similarity=0.116 Sum_probs=137.8
Q ss_pred HHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHH
Q 043158 43 KLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSV 122 (1962)
Q Consensus 43 L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~Dae 122 (1962)
..-+|..++|..+++++|+.-| + .+-.|.-+|+++.++ ++.+.|.+.|.+-+..-|..+-
T Consensus 661 er~ld~~eeA~rllEe~lk~fp-------~-----------f~Kl~lmlGQi~e~~--~~ie~aR~aY~~G~k~cP~~ip 720 (913)
T KOG0495|consen 661 ERYLDNVEEALRLLEEALKSFP-------D-----------FHKLWLMLGQIEEQM--ENIEMAREAYLQGTKKCPNSIP 720 (913)
T ss_pred HHHhhhHHHHHHHHHHHHHhCC-------c-----------hHHHHHHHhHHHHHH--HHHHHHHHHHHhccccCCCCch
Confidence 3344666666666666665421 1 235677899999998 8899999999999999999999
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhhcC
Q 043158 123 VWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSRALHVKNTIEETE 202 (1962)
Q Consensus 123 aW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I~~ad 202 (1962)
+|..|+.+-...|+.-.||..|+++.-.||.++..|.....+-.+.|..+.|.....+||+--|+....| -..|.-+.
T Consensus 721 LWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LW--aEaI~le~ 798 (913)
T KOG0495|consen 721 LWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLW--AEAIWLEP 798 (913)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhH--HHHHHhcc
Confidence 9999999999999999999999999999999999998888888899999999999999999989876544 33343221
Q ss_pred CCCCCCCCccccCccchh---hHHHHhhhHHhhhhhhhhhhhccccccccccC-hhhHHHHHHHHHHHhCCC
Q 043158 203 PVPYAPRGIDKLEPKHVR---LKFIDKRKAAAEILDEGVVCKKLNQNIELCLA-ESSWAALADTLLDILCPL 270 (1962)
Q Consensus 203 P~~f~P~~~daL~p~~~~---L~~i~krk~ed~~~dEAle~Rk~~~al~L~l~-~~SW~~LG~SLL~Ll~~~ 270 (1962)
+..-.....|+|..+..+ +-.+-+..-.+..++-|.+ |+.+++.+.+. .-.|.-+-+.-+..+.+.
T Consensus 799 ~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~--Wf~Ravk~d~d~GD~wa~fykfel~hG~ee 868 (913)
T KOG0495|consen 799 RPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKARE--WFERAVKKDPDNGDAWAWFYKFELRHGTEE 868 (913)
T ss_pred CcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHH--HHHHHHccCCccchHHHHHHHHHHHhCCHH
Confidence 111122223344322111 1111111111112333444 47778888877 788888776666566443
No 144
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.69 E-value=0.00057 Score=80.18 Aligned_cols=109 Identities=16% Similarity=0.196 Sum_probs=99.9
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHHHHHH
Q 043158 88 LKNLATVFLQQGSSHYESALRCYLQAVEIDTKD---SVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNN---WNCMEKL 161 (1962)
Q Consensus 88 ykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~D---aeaW~nLG~al~~LGr~eeAr~alErALeLdPd~---~~Al~nL 161 (1962)
.+|.|.-++.. |+|.+|...|..-+...|++ ++++|-||.++..+|+++.|...|..+++-.|++ |+++..|
T Consensus 144 ~Y~~A~~~~ks--gdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDLYKS--GDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 67778888888 89999999999999999997 7999999999999999999999999999999887 6889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 043158 162 LEVLIAIGDEVACLSVAELILRHWPSHSRALHVKNTI 198 (1962)
Q Consensus 162 g~aL~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I 198 (1962)
|.++.++|+.++|-+.++.+++.-|+.+.|..-+..+
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~~ 258 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVAL 258 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 9999999999999999999999999998776555544
No 145
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.66 E-value=0.00073 Score=80.42 Aligned_cols=151 Identities=18% Similarity=0.161 Sum_probs=124.0
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhc-------c-CC--CCCchhhhHH----------hHHHHHHHHHHHH
Q 043158 37 YHEGLLKLQSKEYDKAQELLESVLKDPLIANAQA-------A-DG--KSSDGHLLQL----------RFLALKNLATVFL 96 (1962)
Q Consensus 37 YqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~-------~-d~--~~s~s~lLqL----------~ylAykNLG~lLl 96 (1962)
+..|..+-+.|..|.|+..-+.++..|.....+. + |+ .+..+++-.+ .-.|...|-.+|.
T Consensus 73 ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ 152 (389)
T COG2956 73 LTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQ 152 (389)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHH
Confidence 6677778888999999999998888775332221 0 11 1233333221 2367778888888
Q ss_pred HcCCCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 043158 97 QQGSSHYESALRCYLQAVEIDTKD-----SVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDE 171 (1962)
Q Consensus 97 ~~g~Gr~eEALe~y~rALaLDP~D-----aeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdy 171 (1962)
.- .++++|++.-++.+.++|.+ +..++-|+..+..-.+++.|+..+.+|++-||..+.|-..+|.+....|+|
T Consensus 153 ~t--reW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y 230 (389)
T COG2956 153 AT--REWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDY 230 (389)
T ss_pred Hh--hHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccch
Confidence 87 78999999999999999987 567889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCH
Q 043158 172 VACLSVAELILRHWPSHS 189 (1962)
Q Consensus 172 eeAL~~~~rALeLdPd~a 189 (1962)
+.|+..++++++.||++.
T Consensus 231 ~~AV~~~e~v~eQn~~yl 248 (389)
T COG2956 231 QKAVEALERVLEQNPEYL 248 (389)
T ss_pred HHHHHHHHHHHHhChHHH
Confidence 999999999999999984
No 146
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.64 E-value=8.7e-05 Score=70.42 Aligned_cols=63 Identities=25% Similarity=0.346 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC---C-C---CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 043158 86 LALKNLATVFLQQGSSHYESALRCYLQAVEID---T-K---DSVVWNQLGTLACSMGLLSISRWAFEQGLLC 150 (1962)
Q Consensus 86 lAykNLG~lLl~~g~Gr~eEALe~y~rALaLD---P-~---DaeaW~nLG~al~~LGr~eeAr~alErALeL 150 (1962)
.+|.|+|.++... |++++|+++|++|+++. + + -+.+++++|.++..+|++++|+.+|++|+++
T Consensus 6 ~~~~~la~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYREL--GRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5677888888877 77888888888887551 1 1 2556777777777777777777777777754
No 147
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.62 E-value=5.5e-05 Score=71.75 Aligned_cols=66 Identities=18% Similarity=0.185 Sum_probs=57.4
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC----CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 043158 119 KDSVVWNQLGTLACSMGLLSISRWAFEQGLLCS----PNN---WNCMEKLLEVLIAIGDEVACLSVAELILRH 184 (1962)
Q Consensus 119 ~DaeaW~nLG~al~~LGr~eeAr~alErALeLd----Pd~---~~Al~nLg~aL~~LGdyeeAL~~~~rALeL 184 (1962)
+-+.+++++|.++..+|++++|+.+|++|+++. +++ +.++.++|.++..+|++++|+.++++++++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 346789999999999999999999999999762 233 567899999999999999999999999986
No 148
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.57 E-value=0.00061 Score=72.43 Aligned_cols=101 Identities=12% Similarity=0.038 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH----HHHHHHH
Q 043158 87 ALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNW----NCMEKLL 162 (1962)
Q Consensus 87 AykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~----~Al~nLg 162 (1962)
.+---|.++.+. |+++.|++.|.+||.+-|..+.+++|.+++++-+|+.++|+.-+++|+++..+.. .++.+.|
T Consensus 45 ~LEl~~valaE~--g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg 122 (175)
T KOG4555|consen 45 ELELKAIALAEA--GDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRG 122 (175)
T ss_pred HHHHHHHHHHhc--cchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 344567778887 9999999999999999999999999999999999999999999999999986653 4578999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 043158 163 EVLIAIGDEVACLSVAELILRHWPSHS 189 (1962)
Q Consensus 163 ~aL~~LGdyeeAL~~~~rALeLdPd~a 189 (1962)
.++..+|+.+.|..-|++|.++....+
T Consensus 123 ~lyRl~g~dd~AR~DFe~AA~LGS~FA 149 (175)
T KOG4555|consen 123 LLYRLLGNDDAARADFEAAAQLGSKFA 149 (175)
T ss_pred HHHHHhCchHHHHHhHHHHHHhCCHHH
Confidence 999999999999999999999865533
No 149
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.56 E-value=0.00026 Score=92.46 Aligned_cols=154 Identities=18% Similarity=0.131 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccc-hhcc--CC--C-CCchhhhH------------HhHHHHHHHHHH
Q 043158 33 LTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIAN-AQAA--DG--K-SSDGHLLQ------------LRFLALKNLATV 94 (1962)
Q Consensus 33 AlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~-a~~~--d~--~-~s~s~lLq------------L~ylAykNLG~l 94 (1962)
|.++--.|..+..-.+.-.|..+|++++.+++-.. +..+ +. . .....+.. ..-..|..+|..
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 33444445544444577789999999998764211 1110 00 0 00000100 123456679999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 043158 95 FLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVAC 174 (1962)
Q Consensus 95 Ll~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeA 174 (1962)
+... +++..|+..|+-|+..||.|.++|..+|.+|.+.|++.-|+..|.+|..++|.++-+.+..+.....+|.|.+|
T Consensus 572 yLea--~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkea 649 (1238)
T KOG1127|consen 572 YLEA--HNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEA 649 (1238)
T ss_pred ccCc--cchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHH
Confidence 9988 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCC
Q 043158 175 LSVAELILRHWPSH 188 (1962)
Q Consensus 175 L~~~~rALeLdPd~ 188 (1962)
+..+...+......
T Consensus 650 ld~l~~ii~~~s~e 663 (1238)
T KOG1127|consen 650 LDALGLIIYAFSLE 663 (1238)
T ss_pred HHHHHHHHHHHHHH
Confidence 99988877665443
No 150
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.54 E-value=0.0011 Score=71.79 Aligned_cols=107 Identities=21% Similarity=0.200 Sum_probs=83.1
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 043158 32 HLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYL 111 (1962)
Q Consensus 32 eAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~ 111 (1962)
-+..+|+.|...++.|+|++|++.++.+...-|+.... -.+...+|-+++.. +++++|+..|.
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya---------------~qAqL~l~yayy~~--~~y~~A~a~~~ 71 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYA---------------EQAQLDLAYAYYKQ--GDYEEAIAAYD 71 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCccc---------------HHHHHHHHHHHHHc--cCHHHHHHHHH
Confidence 35679999999999999999999999998765433211 14677889999998 89999999999
Q ss_pred HHHHhCCCCH---HHHHHHHHHHHHcCC---------------hHHHHHHHHHHHhcCCCCH
Q 043158 112 QAVEIDTKDS---VVWNQLGTLACSMGL---------------LSISRWAFEQGLLCSPNNW 155 (1962)
Q Consensus 112 rALaLDP~Da---eaW~nLG~al~~LGr---------------~eeAr~alErALeLdPd~~ 155 (1962)
+-+++.|+++ -++|..|.+...+.. .+.|...|++.+..-|+..
T Consensus 72 rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 72 RFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 9999999985 678888888888776 5555555555555555543
No 151
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.49 E-value=0.00037 Score=82.82 Aligned_cols=106 Identities=16% Similarity=0.106 Sum_probs=93.4
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 043158 36 TYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQAVE 115 (1962)
Q Consensus 36 lYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rALa 115 (1962)
+-.+|..+.++|.|+||+++|-+.++..|+. .-.|.|+|.+|+.. .++..|......|++
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~N------------------pV~~~NRA~AYlk~--K~FA~AE~DC~~Aia 159 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHN------------------PVYHINRALAYLKQ--KSFAQAEEDCEAAIA 159 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCC------------------ccchhhHHHHHHHH--HHHHHHHHhHHHHHH
Confidence 4567888999999999999999999875422 24577999999998 789999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHH
Q 043158 116 IDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKL 161 (1962)
Q Consensus 116 LDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nL 161 (1962)
+|....-+|.+.|.+-..+|...+|..-+|.+|++.|+..+..-.+
T Consensus 160 Ld~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~ 205 (536)
T KOG4648|consen 160 LDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSL 205 (536)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHH
Confidence 9999999999999999999999999999999999999976654333
No 152
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.46 E-value=0.00043 Score=81.83 Aligned_cols=140 Identities=14% Similarity=0.198 Sum_probs=101.5
Q ss_pred cccHHHHHHHHHHHH-HCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHH
Q 043158 30 ESHLTQTYHEGLLKL-QSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALR 108 (1962)
Q Consensus 30 eeeAlalYqkAL~L~-qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe 108 (1962)
.++|..+|.+|-... ..|++++|.++|.++..... .. + .... -..+|.+.|.++.+ +++++|+.
T Consensus 31 ~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~----~~-~---~~~~----Aa~~~~~Aa~~~k~---~~~~~Ai~ 95 (282)
T PF14938_consen 31 YEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYE----KL-G---DKFE----AAKAYEEAANCYKK---GDPDEAIE 95 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH----HT-T----HHH----HHHHHHHHHHHHHH---TTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH----Hc-C---CHHH----HHHHHHHHHHHHHh---hCHHHHHH
Confidence 456777777666554 44899999999999876421 00 0 0000 13567777777755 48999999
Q ss_pred HHHHHHHh--CCCC----HHHHHHHHHHHHHc-CChHHHHHHHHHHHhcC--CCC----HHHHHHHHHHHHHcCCHHHHH
Q 043158 109 CYLQAVEI--DTKD----SVVWNQLGTLACSM-GLLSISRWAFEQGLLCS--PNN----WNCMEKLLEVLIAIGDEVACL 175 (1962)
Q Consensus 109 ~y~rALaL--DP~D----aeaW~nLG~al~~L-Gr~eeAr~alErALeLd--Pd~----~~Al~nLg~aL~~LGdyeeAL 175 (1962)
+|.+|+.+ .-++ +.++.++|.++... |+++.|+.+|++|+.+- .+. ..++.++|.++..+|+|++|+
T Consensus 96 ~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~ 175 (282)
T PF14938_consen 96 CYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAI 175 (282)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHH
Confidence 99999987 3333 67899999999999 99999999999999963 222 455789999999999999999
Q ss_pred HHHHHHHHh
Q 043158 176 SVAELILRH 184 (1962)
Q Consensus 176 ~~~~rALeL 184 (1962)
..|+++...
T Consensus 176 ~~~e~~~~~ 184 (282)
T PF14938_consen 176 EIYEEVAKK 184 (282)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 999998875
No 153
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.44 E-value=0.00096 Score=78.94 Aligned_cols=145 Identities=21% Similarity=0.210 Sum_probs=101.3
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 043158 32 HLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYL 111 (1962)
Q Consensus 32 eAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~ 111 (1962)
++...|..|....+.+++++|+.+|++++..-. .. +.... -..++.++|.+|...+ |++++|+++|.
T Consensus 73 ~Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~----~~----G~~~~----aA~~~~~lA~~ye~~~-~d~e~Ai~~Y~ 139 (282)
T PF14938_consen 73 EAAKAYEEAANCYKKGDPDEAIECYEKAIEIYR----EA----GRFSQ----AAKCLKELAEIYEEQL-GDYEKAIEYYQ 139 (282)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH----HC----T-HHH----HHHHHHHHHHHHCCTT---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH----hc----CcHHH----HHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 444555556556666677777777777665310 00 00011 1467889999998763 68999999999
Q ss_pred HHHHhCC--CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC----H---HHHHHHHHHHHHcCCHHHHHHHH
Q 043158 112 QAVEIDT--KD----SVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNN----W---NCMEKLLEVLIAIGDEVACLSVA 178 (1962)
Q Consensus 112 rALaLDP--~D----aeaW~nLG~al~~LGr~eeAr~alErALeLdPd~----~---~Al~nLg~aL~~LGdyeeAL~~~ 178 (1962)
+|+++-. +. ..+..++|.++..+|+|++|+..|+++....-+. . ..+.+.+.++...||+..|...+
T Consensus 140 ~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~ 219 (282)
T PF14938_consen 140 KAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKAL 219 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999832 22 4678899999999999999999999998753221 2 23456677888899999999999
Q ss_pred HHHHHhCCCCH
Q 043158 179 ELILRHWPSHS 189 (1962)
Q Consensus 179 ~rALeLdPd~a 189 (1962)
++....+|+..
T Consensus 220 ~~~~~~~~~F~ 230 (282)
T PF14938_consen 220 ERYCSQDPSFA 230 (282)
T ss_dssp HHHGTTSTTST
T ss_pred HHHHhhCCCCC
Confidence 99999998664
No 154
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.43 E-value=0.0027 Score=80.56 Aligned_cols=157 Identities=17% Similarity=0.074 Sum_probs=121.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhc-c------CCCCCchhhhHH---------hHHHHHHHHHHHHHcC
Q 043158 36 TYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQA-A------DGKSSDGHLLQL---------RFLALKNLATVFLQQG 99 (1962)
Q Consensus 36 lYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~-~------d~~~s~s~lLqL---------~ylAykNLG~lLl~~g 99 (1962)
++.-|-.....|+..+|...+.++++..|.....+ + ... -..++-.+ -...|.-.+.+...+
T Consensus 587 wlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~-e~eraR~llakar~~sgTeRv~mKs~~~er~l- 664 (913)
T KOG0495|consen 587 WLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFEND-ELERARDLLAKARSISGTERVWMKSANLERYL- 664 (913)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccc-cHHHHHHHHHHHhccCCcchhhHHHhHHHHHh-
Confidence 44445556677999999999999998654332211 0 000 00111111 123566666666666
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 043158 100 SSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAE 179 (1962)
Q Consensus 100 ~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~ 179 (1962)
|..++|+..+++||..-|+.+-+|..+|+++.++++.+.|+.+|..+++.-|+.++.|.-|+.+--..|....|...++
T Consensus 665 -d~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ild 743 (913)
T KOG0495|consen 665 -DNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILD 743 (913)
T ss_pred -hhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHH
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHH
Q 043158 180 LILRHWPSHSRALHVK 195 (1962)
Q Consensus 180 rALeLdPd~a~Al~lk 195 (1962)
++.-.+|+++.-|.-.
T Consensus 744 rarlkNPk~~~lwle~ 759 (913)
T KOG0495|consen 744 RARLKNPKNALLWLES 759 (913)
T ss_pred HHHhcCCCcchhHHHH
Confidence 9999999987655433
No 155
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.40 E-value=0.013 Score=59.91 Aligned_cols=102 Identities=23% Similarity=0.260 Sum_probs=75.3
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcC
Q 043158 94 VFLQQGSSHYESALRCYLQAVEIDT---KDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPN-NWNCMEKLLEVLIAIG 169 (1962)
Q Consensus 94 lLl~~g~Gr~eEALe~y~rALaLDP---~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd-~~~Al~nLg~aL~~LG 169 (1962)
++... |++++|+.+|.+|+..+| .....+..++..+...++++.|+..+.+++...|. ...++.+++..+...+
T Consensus 139 ~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 139 ALYEL--GDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHc--CCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 56666 778888888888877776 46667777777777778888888888888888887 6777888888888888
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 043158 170 DEVACLSVAELILRHWPSHSRALHVKNT 197 (1962)
Q Consensus 170 dyeeAL~~~~rALeLdPd~a~Al~lk~~ 197 (1962)
++..|...+..++...|.....+.....
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 244 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLAL 244 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHH
Confidence 8888888888888877774444444433
No 156
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.00034 Score=80.37 Aligned_cols=94 Identities=14% Similarity=0.120 Sum_probs=85.6
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 043158 89 KNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAI 168 (1962)
Q Consensus 89 kNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~L 168 (1962)
+--|.-+... .++..|+.+|.+|+.++|.-+..|.|.+.++.++.+++.+.+-.++|++++||.+.+++-||..+.+.
T Consensus 14 kE~gnk~f~~--k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s 91 (284)
T KOG4642|consen 14 KEQGNKCFIP--KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQS 91 (284)
T ss_pred Hhccccccch--hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhh
Confidence 3344444444 67999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHh
Q 043158 169 GDEVACLSVAELILRH 184 (1962)
Q Consensus 169 GdyeeAL~~~~rALeL 184 (1962)
..|++|+.++.+|..+
T Consensus 92 ~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 92 KGYDEAIKVLQRAYSL 107 (284)
T ss_pred ccccHHHHHHHHHHHH
Confidence 9999999999988655
No 157
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.39 E-value=0.003 Score=73.79 Aligned_cols=110 Identities=12% Similarity=0.004 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHcCChHHHHHHHHHHHhcCCCCH---HHH
Q 043158 85 FLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVW---NQLGTLACSMGLLSISRWAFEQGLLCSPNNW---NCM 158 (1962)
Q Consensus 85 ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW---~nLG~al~~LGr~eeAr~alErALeLdPd~~---~Al 158 (1962)
...++..|.-+... |++++|++.|++++...|..+.+- +.+|.++.++|++++|+..|++.++..|+|+ .++
T Consensus 32 ~~~~Y~~A~~~~~~--g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 32 PSEIYATAQQKLQD--GNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred HHHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 35677888888888 899999999999999999987665 9999999999999999999999999999984 457
Q ss_pred HHHHHHHHHcC---------------C---HHHHHHHHHHHHHhCCCCHHHHHHHH
Q 043158 159 EKLLEVLIAIG---------------D---EVACLSVAELILRHWPSHSRALHVKN 196 (1962)
Q Consensus 159 ~nLg~aL~~LG---------------d---yeeAL~~~~rALeLdPd~a~Al~lk~ 196 (1962)
+.+|.+...++ | ...|+..+++.++..|+..-+-..+.
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~ 165 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATK 165 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHH
Confidence 88887765554 1 24677888999999998865444433
No 158
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.39 E-value=0.00024 Score=61.50 Aligned_cols=41 Identities=15% Similarity=0.230 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q 043158 122 VVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLL 162 (1962)
Q Consensus 122 eaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg 162 (1962)
++|+.+|.++..+|++++|+.+|+++++.+|+++.+|..||
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 44555555555555555555555555555555555555544
No 159
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.39 E-value=0.01 Score=60.63 Aligned_cols=100 Identities=24% Similarity=0.292 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 043158 86 LALKNLATVFLQQGSSHYESALRCYLQAVEIDTK-DSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEV 164 (1962)
Q Consensus 86 lAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~-DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~a 164 (1962)
..+..++..+... +++++|+..+.+++...|. ....+..++..+...+.+..|+..+..++...|.....+..++..
T Consensus 168 ~~~~~~~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 245 (291)
T COG0457 168 EALLALGALLEAL--GRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALL 245 (291)
T ss_pred HHHHHhhhHHHHh--cCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHH
Confidence 3455556556666 8999999999999999999 799999999999999999999999999999999988889999988
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCC
Q 043158 165 LIAIGDEVACLSVAELILRHWPS 187 (1962)
Q Consensus 165 L~~LGdyeeAL~~~~rALeLdPd 187 (1962)
+...|++.++...+.+++..+|.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 246 LLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHcCCHHHHHHHHHHHHHhCcc
Confidence 88888899999999999999987
No 160
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.34 E-value=0.00082 Score=74.98 Aligned_cols=92 Identities=17% Similarity=0.173 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCC--------CCHHHHHHHHHHHHHhCCCC
Q 043158 49 YDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGS--------SHYESALRCYLQAVEIDTKD 120 (1962)
Q Consensus 49 feEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~--------Gr~eEALe~y~rALaLDP~D 120 (1962)
|+.|.+.|+......| . .+.+++|-|.+|+++.. .-+++|+.-|++||.++|+.
T Consensus 7 FE~ark~aea~y~~nP-------~-----------DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~ 68 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNP-------L-----------DADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNK 68 (186)
T ss_dssp HHHHHHHHHHHHHH-T-------T------------HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHHHHHhCc-------H-----------hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCch
Confidence 6677777777665432 1 24566677776666410 12789999999999999999
Q ss_pred HHHHHHHHHHHHHcCC-----------hHHHHHHHHHHHhcCCCCHHHH
Q 043158 121 SVVWNQLGTLACSMGL-----------LSISRWAFEQGLLCSPNNWNCM 158 (1962)
Q Consensus 121 aeaW~nLG~al~~LGr-----------~eeAr~alErALeLdPd~~~Al 158 (1962)
.++++++|.++..++. |+.|..||++|...+|++...+
T Consensus 69 hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ 117 (186)
T PF06552_consen 69 HDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYR 117 (186)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHH
T ss_pred HHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence 9999999999999876 8899999999999999986544
No 161
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.0016 Score=75.08 Aligned_cols=120 Identities=10% Similarity=0.047 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcC-Cc--ccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 043158 34 TQTYHEGLLKLQSKEYDKAQELLESVLKD-PL--IANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCY 110 (1962)
Q Consensus 34 lalYqkAL~L~qqGRfeEA~eaY~raLa~-p~--lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y 110 (1962)
..+-+.|..+.++|+|.||...|+.++.. .. ++ -.|++. ---.+....-..+.|+.++++.. |++-+++++.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lk-EkP~e~--eW~eLdk~~tpLllNy~QC~L~~--~e~yevleh~ 253 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLK-EKPGEP--EWLELDKMITPLLLNYCQCLLKK--EEYYEVLEHC 253 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhc-cCCCCh--HHHHHHHhhhHHHHhHHHHHhhH--HHHHHHHHHH
Confidence 46778999999999999999999998852 10 11 011000 00112222457788999999999 9999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHH
Q 043158 111 LQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCM 158 (1962)
Q Consensus 111 ~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al 158 (1962)
...|.++|++..++|..|.+....=+..+|..-|..+|+++|.-+++.
T Consensus 254 seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV 301 (329)
T KOG0545|consen 254 SEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV 301 (329)
T ss_pred HHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence 999999999999999999999999999999999999999999877664
No 162
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.27 E-value=0.00072 Score=76.86 Aligned_cols=105 Identities=17% Similarity=0.038 Sum_probs=97.5
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 043158 84 RFLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLE 163 (1962)
Q Consensus 84 ~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~ 163 (1962)
++..++-+|.+|-.. |-..-|.-.|.+||++.|+-|++++-||.-+...|+|+.|..+|...+++||.+-=++.|.|.
T Consensus 64 RA~l~fERGvlYDSl--GL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi 141 (297)
T COG4785 64 RAQLLFERGVLYDSL--GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI 141 (297)
T ss_pred HHHHHHHhcchhhhh--hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce
Confidence 456677888888777 778889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 043158 164 VLIAIGDEVACLSVAELILRHWPSHSR 190 (1962)
Q Consensus 164 aL~~LGdyeeAL~~~~rALeLdPd~a~ 190 (1962)
.++--|||.-|.+-+.+--.-||++|-
T Consensus 142 ~~YY~gR~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 142 ALYYGGRYKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred eeeecCchHhhHHHHHHHHhcCCCChH
Confidence 999999999999999999999999984
No 163
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.25 E-value=0.00028 Score=58.53 Aligned_cols=33 Identities=24% Similarity=0.484 Sum_probs=24.9
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 043158 109 CYLQAVEIDTKDSVVWNQLGTLACSMGLLSISR 141 (1962)
Q Consensus 109 ~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr 141 (1962)
+|++||+++|+++++|++||.++...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 467777777777777777777777777777775
No 164
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.25 E-value=0.00056 Score=59.26 Aligned_cols=43 Identities=26% Similarity=0.382 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 043158 86 LALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTL 130 (1962)
Q Consensus 86 lAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~a 130 (1962)
.+|..+|.++.+. |++++|++.|+++++.+|+|+++|..+|.+
T Consensus 2 ~~~~~la~~~~~~--G~~~~A~~~~~~~l~~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 2 AAWLALARAYRRL--GQPDEAERLLRRALALDPDDPEAWRALAQL 44 (44)
T ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence 4688999999999 999999999999999999999999999863
No 165
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.19 E-value=0.0068 Score=68.04 Aligned_cols=124 Identities=15% Similarity=0.073 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 043158 35 QTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQAV 114 (1962)
Q Consensus 35 alYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rAL 114 (1962)
-.|..|..+...||+.||...|++++.-+ +. + + ...+..++++.... +++.+|...++...
T Consensus 91 nr~rLa~al~elGr~~EA~~hy~qalsG~-fA-----~-----d------~a~lLglA~Aqfa~--~~~A~a~~tLe~l~ 151 (251)
T COG4700 91 NRYRLANALAELGRYHEAVPHYQQALSGI-FA-----H-----D------AAMLLGLAQAQFAI--QEFAAAQQTLEDLM 151 (251)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhccc-cC-----C-----C------HHHHHHHHHHHHhh--ccHHHHHHHHHHHh
Confidence 46778888888899999999999888632 11 1 1 13345677777777 88888988888888
Q ss_pred HhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 043158 115 EIDTK--DSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVA 178 (1962)
Q Consensus 115 aLDP~--DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~ 178 (1962)
+-.|. .|+....+|+++..+|++.+|..+||.++..-|+ +.+....+..|...|+..+|-+.+
T Consensus 152 e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 152 EYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred hcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHH
Confidence 88876 4777888889999999999999999999988886 666777788888888877776644
No 166
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.16 E-value=0.00047 Score=85.52 Aligned_cols=106 Identities=16% Similarity=0.162 Sum_probs=96.5
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 043158 88 LKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIA 167 (1962)
Q Consensus 88 ykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~ 167 (1962)
+++-|.-++.- +.++.|+..|.+|++++|+++..+-+.+.++.+.+++..|+.-+.+|++++|....++...|.+...
T Consensus 7 ~k~ean~~l~~--~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~ 84 (476)
T KOG0376|consen 7 LKNEANEALKD--KVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMA 84 (476)
T ss_pred hhhHHhhhccc--chHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHh
Confidence 34445555555 7899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 043158 168 IGDEVACLSVAELILRHWPSHSRALHVK 195 (1962)
Q Consensus 168 LGdyeeAL~~~~rALeLdPd~a~Al~lk 195 (1962)
++++.+|+..++.+..+.|+++.+.-..
T Consensus 85 l~~~~~A~~~l~~~~~l~Pnd~~~~r~~ 112 (476)
T KOG0376|consen 85 LGEFKKALLDLEKVKKLAPNDPDATRKI 112 (476)
T ss_pred HHHHHHHHHHHHHhhhcCcCcHHHHHHH
Confidence 9999999999999999999998766443
No 167
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.13 E-value=0.0016 Score=77.83 Aligned_cols=109 Identities=12% Similarity=0.010 Sum_probs=87.5
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 043158 90 NLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMG--LLSISRWAFEQGLLCSPNNWNCMEKLLEVLIA 167 (1962)
Q Consensus 90 NLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LG--r~eeAr~alErALeLdPd~~~Al~nLg~aL~~ 167 (1962)
-.-++++.. +|++.|...+..+-+.+++..-....-|.+....| .+.+|...|+.....-|..+..+..++.+...
T Consensus 136 l~Vqi~L~~--~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~ 213 (290)
T PF04733_consen 136 LAVQILLKM--NRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQ 213 (290)
T ss_dssp HHHHHHHHT--T-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHH
T ss_pred HHHHHHHHc--CCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 355677777 89999999999999888776555544455555555 69999999999888778889999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhh
Q 043158 168 IGDEVACLSVAELILRHWPSHSRALHVKNTIEE 200 (1962)
Q Consensus 168 LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I~~ 200 (1962)
+|+|++|...+..|+..+|+++.++.++..+..
T Consensus 214 ~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~ 246 (290)
T PF04733_consen 214 LGHYEEAEELLEEALEKDPNDPDTLANLIVCSL 246 (290)
T ss_dssp CT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 999999999999999999999999998877643
No 168
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.12 E-value=0.0063 Score=68.86 Aligned_cols=109 Identities=18% Similarity=0.100 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH---HHH
Q 043158 85 FLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKD---SVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNW---NCM 158 (1962)
Q Consensus 85 ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~D---aeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~---~Al 158 (1962)
...++..|..+++. |++.+|+..|.+.+...|.. +.+++.+|.++...|++..|+..|++-++..|+++ .++
T Consensus 5 ~~~lY~~a~~~~~~--g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 5 AEALYQKALEALQQ--GDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp HHHHHHHHHHHHHC--T-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred HHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 46788899999999 99999999999999998875 69999999999999999999999999999999985 468
Q ss_pred HHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHH
Q 043158 159 EKLLEVLIAIG-----------DEVACLSVAELILRHWPSHSRALHVK 195 (1962)
Q Consensus 159 ~nLg~aL~~LG-----------dyeeAL~~~~rALeLdPd~a~Al~lk 195 (1962)
+.+|.+.+.+. ...+|+..++..++..|+...+--.+
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~ 130 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAK 130 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHH
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHH
Confidence 88888766553 34578888999999999886544333
No 169
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.10 E-value=0.0078 Score=65.32 Aligned_cols=104 Identities=15% Similarity=0.047 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHH---HH
Q 043158 86 LALKNLATVFLQQGSSHYESALRCYLQAVEIDTKD---SVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNC---ME 159 (1962)
Q Consensus 86 lAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~D---aeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~A---l~ 159 (1962)
..+++-|.-.++. |++.+|++.|+.....-|.. ..+...||.++...|++++|+..+++-|+++|+|+.+ ++
T Consensus 11 ~~ly~~a~~~l~~--~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 11 QELYQEAQEALQK--GNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred HHHHHHHHHHHHh--CCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 5678889999998 89999999999999999875 5889999999999999999999999999999999664 77
Q ss_pred HHHHHHHHcCC---------------HHHHHHHHHHHHHhCCCCHHH
Q 043158 160 KLLEVLIAIGD---------------EVACLSVAELILRHWPSHSRA 191 (1962)
Q Consensus 160 nLg~aL~~LGd---------------yeeAL~~~~rALeLdPd~a~A 191 (1962)
..|.+.+.+.+ ...|...|++.+..-|+..-|
T Consensus 89 ~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 89 MRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 88877777765 778888888888888887644
No 170
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.02 E-value=0.00081 Score=54.57 Aligned_cols=33 Identities=15% Similarity=0.243 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 043158 121 SVVWNQLGTLACSMGLLSISRWAFEQGLLCSPN 153 (1962)
Q Consensus 121 aeaW~nLG~al~~LGr~eeAr~alErALeLdPd 153 (1962)
+.+|+++|.++..+|++++|+.+|++||+++|+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 456777777777777777777777777777775
No 171
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.99 E-value=0.011 Score=79.90 Aligned_cols=98 Identities=13% Similarity=0.148 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-----
Q 043158 86 LALKNLATVFLQQGSSHYESALRCYLQAVEIDTK--------DSVVWNQLGTLACSMGLLSISRWAFEQGLLCSP----- 152 (1962)
Q Consensus 86 lAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~--------DaeaW~nLG~al~~LGr~eeAr~alErALeLdP----- 152 (1962)
.++.++|.++... |++++|...+.+|+++-.. ...++..+|.++...|++++|+.++++++.+..
T Consensus 532 ~~~~~la~~~~~~--G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~ 609 (903)
T PRK04841 532 WSLLQQSEILFAQ--GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQ 609 (903)
T ss_pred HHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCch
Confidence 4677899999999 9999999999999987221 234567889999999999999999999988643
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 043158 153 NNWNCMEKLLEVLIAIGDEVACLSVAELILRHW 185 (1962)
Q Consensus 153 d~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLd 185 (1962)
..+.++..++.++...|++++|...+.+++.+.
T Consensus 610 ~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~ 642 (903)
T PRK04841 610 QQLQCLAMLAKISLARGDLDNARRYLNRLENLL 642 (903)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 235567788999999999999999999987763
No 172
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.98 E-value=0.00058 Score=56.71 Aligned_cols=33 Identities=18% Similarity=0.393 Sum_probs=31.6
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 043158 143 AFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACL 175 (1962)
Q Consensus 143 alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL 175 (1962)
+|++||+++|+++.+|.+||.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 589999999999999999999999999999986
No 173
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.98 E-value=0.0083 Score=79.31 Aligned_cols=145 Identities=17% Similarity=0.112 Sum_probs=104.8
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhc------c-CCCCCchhhhHH------------hHHHHHHHHHHHH
Q 043158 36 TYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQA------A-DGKSSDGHLLQL------------RFLALKNLATVFL 96 (1962)
Q Consensus 36 lYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~------~-d~~~s~s~lLqL------------~ylAykNLG~lLl 96 (1962)
+......+.+.|+.++|.++|++..+....++... + ...+....+..+ ....|..+..+|.
T Consensus 394 ~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~ 473 (697)
T PLN03081 394 WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLG 473 (697)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHH
Confidence 33445568888999999999999886432111100 0 001111111111 2246777888888
Q ss_pred HcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 043158 97 QQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLS 176 (1962)
Q Consensus 97 ~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~ 176 (1962)
+. |++++|.+.+.++ ...| +...|..|..++...|+++.|+.++++.++++|++...+..|+.+|...|++++|..
T Consensus 474 r~--G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~ 549 (697)
T PLN03081 474 RE--GLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAK 549 (697)
T ss_pred hc--CCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHH
Confidence 88 8999999988764 2333 567899999999999999999999999999999999899999999999999999999
Q ss_pred HHHHHHHh
Q 043158 177 VAELILRH 184 (1962)
Q Consensus 177 ~~~rALeL 184 (1962)
.++...+.
T Consensus 550 v~~~m~~~ 557 (697)
T PLN03081 550 VVETLKRK 557 (697)
T ss_pred HHHHHHHc
Confidence 87765544
No 174
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.97 E-value=0.0095 Score=75.55 Aligned_cols=157 Identities=16% Similarity=0.094 Sum_probs=111.1
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC---cc--cchhccCC-CCCchhhhH-------HhHHHHHHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDP---LI--ANAQAADG-KSSDGHLLQ-------LRFLALKNLATVFL 96 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p---~l--k~a~~~d~-~~s~s~lLq-------L~ylAykNLG~lLl 96 (1962)
+++..+++.+-+.+.+.++|++|+..-+.-.... .+ ..+.- .+ ..-.+.++- +..-...-.|++++
T Consensus 43 pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc-~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlY 121 (652)
T KOG2376|consen 43 PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYC-EYRLNKLDEALKTLKGLDRLDDKLLELRAQVLY 121 (652)
T ss_pred CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHH-HHHcccHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 6788999999999999999999985544322211 11 00000 00 000011111 11236667899999
Q ss_pred HcCCCCHHHHHHHHHHH---------------------------HHh---CCC-CHHHHHHHHHHHHHcCChHHHHHHHH
Q 043158 97 QQGSSHYESALRCYLQA---------------------------VEI---DTK-DSVVWNQLGTLACSMGLLSISRWAFE 145 (1962)
Q Consensus 97 ~~g~Gr~eEALe~y~rA---------------------------LaL---DP~-DaeaW~nLG~al~~LGr~eeAr~alE 145 (1962)
++ |+|++|++.|+.. ++. -|. +.+..||.+.++...|+|.+|+..++
T Consensus 122 rl--~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~ 199 (652)
T KOG2376|consen 122 RL--ERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLE 199 (652)
T ss_pred HH--hhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 99 8999999999854 222 233 67899999999999999999999999
Q ss_pred HHHhc--------CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 043158 146 QGLLC--------SPN-------NWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHS 189 (1962)
Q Consensus 146 rALeL--------dPd-------~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a 189 (1962)
+|+.+ |-+ -..+..+|+-||+.+|+-++|...|...++.+|-+.
T Consensus 200 kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~ 258 (652)
T KOG2376|consen 200 KALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADE 258 (652)
T ss_pred HHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCc
Confidence 99431 111 145678999999999999999999999999999886
No 175
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.94 E-value=0.00048 Score=83.35 Aligned_cols=158 Identities=13% Similarity=0.091 Sum_probs=109.1
Q ss_pred CcCChhhhcCCcccHHHHHHHHHHHHHCCCH-------------HHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhH
Q 043158 19 LAPTKEAQARPESHLTQTYHEGLLKLQSKEY-------------DKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRF 85 (1962)
Q Consensus 19 ~~~TKEaQa~~eeeAlalYqkAL~L~qqGRf-------------eEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~y 85 (1962)
.+-++|+-++ .-++.++|+.|..||..|+. +|+..+++.+.+.-...-... . .+.+++. --
T Consensus 122 Ld~areLgDr-v~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~-~--~lgDr~a--qG 195 (639)
T KOG1130|consen 122 LDFARELGDR-VLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS-E--KLGDRLA--QG 195 (639)
T ss_pred hHHHHHHhHH-HhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH-H--HhhhHHh--hc
Confidence 3556777755 77889999999999988642 233333333332100000000 0 0011111 12
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC----CC--
Q 043158 86 LALKNLATVFLQQGSSHYESALRCYLQAVEIDTKD------SVVWNQLGTLACSMGLLSISRWAFEQGLLCS----PN-- 153 (1962)
Q Consensus 86 lAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~D------aeaW~nLG~al~~LGr~eeAr~alErALeLd----Pd-- 153 (1962)
.+|-|||+.|+-+ |++++|+.+-+.-|.+.-.. -.++-|||.++..+|+++.|+.+|.+++.+. ..
T Consensus 196 Ra~GnLGNTyYlL--Gdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~v 273 (639)
T KOG1130|consen 196 RAYGNLGNTYYLL--GDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTV 273 (639)
T ss_pred chhcccCceeeee--ccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhH
Confidence 5788999999999 89999999988777664432 3588999999999999999999999877654 22
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 043158 154 NWNCMEKLLEVLIAIGDEVACLSVAELILRH 184 (1962)
Q Consensus 154 ~~~Al~nLg~aL~~LGdyeeAL~~~~rALeL 184 (1962)
.+..-+.||+.|.-+.++..|+.++.+-|++
T Consensus 274 EAQscYSLgNtytll~e~~kAI~Yh~rHLaI 304 (639)
T KOG1130|consen 274 EAQSCYSLGNTYTLLKEVQKAITYHQRHLAI 304 (639)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3445689999999999999999999887765
No 176
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.92 E-value=0.0015 Score=52.54 Aligned_cols=34 Identities=29% Similarity=0.407 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 043158 121 SVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNN 154 (1962)
Q Consensus 121 aeaW~nLG~al~~LGr~eeAr~alErALeLdPd~ 154 (1962)
|++|+.+|.++..+|++++|+.+|+++++++|+|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4677777777777777777777777777777764
No 177
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.90 E-value=0.015 Score=78.44 Aligned_cols=134 Identities=13% Similarity=0.031 Sum_probs=103.8
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 043158 37 YHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQAVEI 116 (1962)
Q Consensus 37 YqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaL 116 (1962)
...|..+...|++++|...++++++..+.. + . .....++.++|.++... |++++|...|.+|++.
T Consensus 456 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~-----~-----~---~~~~~a~~~lg~~~~~~--G~~~~A~~~~~~al~~ 520 (903)
T PRK04841 456 ALRAQVAINDGDPEEAERLAELALAELPLT-----W-----Y---YSRIVATSVLGEVHHCK--GELARALAMMQQTEQM 520 (903)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCCCc-----c-----H---HHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHH
Confidence 345667778999999999999998742100 0 0 01234677899999988 9999999999999976
Q ss_pred CCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043158 117 DTKD------SVVWNQLGTLACSMGLLSISRWAFEQGLLCSPN--------NWNCMEKLLEVLIAIGDEVACLSVAELIL 182 (1962)
Q Consensus 117 DP~D------aeaW~nLG~al~~LGr~eeAr~alErALeLdPd--------~~~Al~nLg~aL~~LGdyeeAL~~~~rAL 182 (1962)
.... ..++.++|.++...|++++|+..+++++.+... ...++..+|.+++..|++++|...+++++
T Consensus 521 ~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al 600 (903)
T PRK04841 521 ARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGL 600 (903)
T ss_pred HhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhH
Confidence 4321 346778999999999999999999999986322 12345678899999999999999999998
Q ss_pred HhC
Q 043158 183 RHW 185 (1962)
Q Consensus 183 eLd 185 (1962)
.+.
T Consensus 601 ~~~ 603 (903)
T PRK04841 601 EVL 603 (903)
T ss_pred Hhh
Confidence 764
No 178
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.88 E-value=0.045 Score=75.77 Aligned_cols=100 Identities=12% Similarity=0.074 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCCHHHHH
Q 043158 85 FLALKNLATVFLQQGSSHYESALRCYLQAVEI----DTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCS-PNNWNCME 159 (1962)
Q Consensus 85 ylAykNLG~lLl~~g~Gr~eEALe~y~rALaL----DP~DaeaW~nLG~al~~LGr~eeAr~alErALeLd-Pd~~~Al~ 159 (1962)
..+|..+...+.+. |++++|.+.|.+.... .| |...|..+-.++.+.|++++|+..|+...+.+ +.++..|.
T Consensus 542 ~vTYnsLI~a~~k~--G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tyn 618 (1060)
T PLN03218 542 RVVFNALISACGQS--GAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYT 618 (1060)
T ss_pred HHHHHHHHHHHHHC--CCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHH
Confidence 35677777777777 7888888888887653 34 46677778888888888888888888887776 44567777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCC
Q 043158 160 KLLEVLIAIGDEVACLSVAELILRH--WPS 187 (1962)
Q Consensus 160 nLg~aL~~LGdyeeAL~~~~rALeL--dPd 187 (1962)
.+...+.+.|++++|+..|+...+. .|+
T Consensus 619 sLI~ay~k~G~~deAl~lf~eM~~~Gv~PD 648 (1060)
T PLN03218 619 IAVNSCSQKGDWDFALSIYDDMKKKGVKPD 648 (1060)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Confidence 7888888888888888888777664 455
No 179
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.0046 Score=74.09 Aligned_cols=112 Identities=13% Similarity=0.189 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHH
Q 043158 85 FLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKD----SVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEK 160 (1962)
Q Consensus 85 ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~D----aeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~n 160 (1962)
+..|+--|+-++.. .+|..|+++|.++|...-.| +.++.|.+.+...+|+|+-|+.-..+|+.++|.|..|+++
T Consensus 81 Aen~KeeGN~~fK~--Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R 158 (390)
T KOG0551|consen 81 AENYKEEGNEYFKE--KRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIR 158 (390)
T ss_pred HHHHHHHhHHHHHh--hhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhh
Confidence 45788899999998 89999999999999987665 5678999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 043158 161 LLEVLIAIGDEVACLSVAELILRHWPSHSRALHVKNTI 198 (1962)
Q Consensus 161 Lg~aL~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I 198 (1962)
-+.++.+|.++.+|+.+++..+..+...-.+.-+...+
T Consensus 159 ~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~~~l~~l~ 196 (390)
T KOG0551|consen 159 GAKCLLELERFAEAVNWCEEGLQIDDEAKKAIELRNLI 196 (390)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhc
Confidence 99999999999999999999988876655455444443
No 180
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.87 E-value=0.011 Score=73.53 Aligned_cols=97 Identities=15% Similarity=0.070 Sum_probs=91.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043158 101 SHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAEL 180 (1962)
Q Consensus 101 Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~r 180 (1962)
++++.|++.|++..+.+|+ ++..+++++...++-.+|+..+.++|..+|++...+.-.+..|...++++.|+.++++
T Consensus 183 ~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~ 259 (395)
T PF09295_consen 183 QRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKK 259 (395)
T ss_pred ccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 7899999999999988864 7788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHhhh
Q 043158 181 ILRHWPSHSRALHVKNTIEE 200 (1962)
Q Consensus 181 ALeLdPd~a~Al~lk~~I~~ 200 (1962)
|..+.|+...+|+.++.++-
T Consensus 260 av~lsP~~f~~W~~La~~Yi 279 (395)
T PF09295_consen 260 AVELSPSEFETWYQLAECYI 279 (395)
T ss_pred HHHhCchhHHHHHHHHHHHH
Confidence 99999999999999987643
No 181
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.79 E-value=0.035 Score=71.57 Aligned_cols=67 Identities=9% Similarity=-0.059 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 043158 123 VWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHS 189 (1962)
Q Consensus 123 aW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a 189 (1962)
+|+-+++.+..+|++++|+...++||+..|..++.+...|.+|...|++.+|..+++.|-.+|+.+-
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DR 262 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADR 262 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhH
Confidence 4488899999999999999999999999999999999999999999999999999999999999874
No 182
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.76 E-value=0.011 Score=66.48 Aligned_cols=102 Identities=18% Similarity=0.178 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--HHHHHHHH
Q 043158 86 LALKNLATVFLQQGSSHYESALRCYLQAVE-IDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNN--WNCMEKLL 162 (1962)
Q Consensus 86 lAykNLG~lLl~~g~Gr~eEALe~y~rALa-LDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~--~~Al~nLg 162 (1962)
.-.+.||..+.+. ||+.||..+|.+|+. +-.+|+.+...++++...++++.+|...+|...+-+|.. |+.+.-+|
T Consensus 90 qnr~rLa~al~el--Gr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~a 167 (251)
T COG4700 90 QNRYRLANALAEL--GRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFA 167 (251)
T ss_pred HHHHHHHHHHHHh--hhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHH
Confidence 3466799999999 999999999999986 678899999999999999999999999999999999975 77788899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 043158 163 EVLIAIGDEVACLSVAELILRHWPSHS 189 (1962)
Q Consensus 163 ~aL~~LGdyeeAL~~~~rALeLdPd~a 189 (1962)
.+|..+|++.+|...++.++..-|+..
T Consensus 168 R~laa~g~~a~Aesafe~a~~~ypg~~ 194 (251)
T COG4700 168 RTLAAQGKYADAESAFEVAISYYPGPQ 194 (251)
T ss_pred HHHHhcCCchhHHHHHHHHHHhCCCHH
Confidence 999999999999999999999998854
No 183
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.75 E-value=0.036 Score=58.90 Aligned_cols=110 Identities=24% Similarity=0.250 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCC---cccchhccCCCCCc----hhhhHHhHHHHHHHHHHHHHcCCCCHHHHH
Q 043158 35 QTYHEGLLKLQSKEYDKAQELLESVLKDP---LIANAQAADGKSSD----GHLLQLRFLALKNLATVFLQQGSSHYESAL 107 (1962)
Q Consensus 35 alYqkAL~L~qqGRfeEA~eaY~raLa~p---~lk~a~~~d~~~s~----s~lLqL~ylAykNLG~lLl~~g~Gr~eEAL 107 (1962)
.+...|......|+.+++.+.|++++..- .+... ...... ..+-.....+...++..+... |++++|+
T Consensus 8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~---~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~--~~~~~a~ 82 (146)
T PF03704_consen 8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDL---DDEEWVEPERERLRELYLDALERLAEALLEA--GDYEEAL 82 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGG---TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHT--T-HHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCC---CccHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCHHHHH
Confidence 34566777788899999999999999852 11110 000011 112223456777888888888 8999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 043158 108 RCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLL 149 (1962)
Q Consensus 108 e~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALe 149 (1962)
..+++++.+||-|-.+|..+-.++..+|+..+|+..|++.-.
T Consensus 83 ~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 83 RLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987653
No 184
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.0033 Score=72.64 Aligned_cols=99 Identities=15% Similarity=0.057 Sum_probs=86.5
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 043158 32 HLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYL 111 (1962)
Q Consensus 32 eAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~ 111 (1962)
-+.++-.+|-.+....+|++|+.+|-+++...|.. ...|.|.+.++++. .+++.+.+.-+
T Consensus 9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~------------------~~Y~tnralchlk~--~~~~~v~~dcr 68 (284)
T KOG4642|consen 9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTV------------------ASYYTNRALCHLKL--KHWEPVEEDCR 68 (284)
T ss_pred HHHHHHhccccccchhhhchHHHHHHHHHhcCCCc------------------chhhhhHHHHHHHh--hhhhhhhhhHH
Confidence 34556667777888899999999999999865411 24677999999998 89999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 043158 112 QAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLC 150 (1962)
Q Consensus 112 rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeL 150 (1962)
+|++++|+.+.++|-+|.++.....|++|+.++.+|..+
T Consensus 69 ralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 69 RALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred HHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999654
No 185
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.71 E-value=0.0012 Score=79.98 Aligned_cols=101 Identities=21% Similarity=0.241 Sum_probs=80.8
Q ss_pred hHHHHHHHHHHHHHcCC------------------CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHH
Q 043158 84 RFLALKNLATVFLQQGS------------------SHYESALRCYLQAVEIDTKD------SVVWNQLGTLACSMGLLSI 139 (1962)
Q Consensus 84 ~ylAykNLG~lLl~~g~------------------Gr~eEALe~y~rALaLDP~D------aeaW~nLG~al~~LGr~ee 139 (1962)
...|++|+|++|..+|+ ..++.|+++|..-|++...- ..++-+||..+.-+|+|+.
T Consensus 134 e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ 213 (639)
T KOG1130|consen 134 ESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQ 213 (639)
T ss_pred hhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHH
Confidence 35799999999999864 12667777777766664332 3467789999999999999
Q ss_pred HHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 043158 140 SRWAFEQGLLCSPNN------WNCMEKLLEVLIAIGDEVACLSVAELILRH 184 (1962)
Q Consensus 140 Ar~alErALeLdPd~------~~Al~nLg~aL~~LGdyeeAL~~~~rALeL 184 (1962)
|+.+-+.-|.+.-.+ ..|+.|||+++.-+|+++.|+++|++++.+
T Consensus 214 ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 214 AIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 999998888876543 457899999999999999999999987765
No 186
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.69 E-value=0.16 Score=70.65 Aligned_cols=151 Identities=9% Similarity=-0.000 Sum_probs=109.7
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhc------c-CCCCCchhhh-------------HHhHHHHHHH
Q 043158 32 HLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQA------A-DGKSSDGHLL-------------QLRFLALKNL 91 (1962)
Q Consensus 32 eAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~------~-d~~~s~s~lL-------------qL~ylAykNL 91 (1962)
+...+....-.+.+.|++++|.++|++..+....++... + ...+..+.+. .+...+|..+
T Consensus 506 dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaL 585 (1060)
T PLN03218 506 NVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGAL 585 (1060)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHH
Confidence 344444444556777888888888888876432111000 0 0000011111 1134577778
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHc
Q 043158 92 ATVFLQQGSSHYESALRCYLQAVEID-TKDSVVWNQLGTLACSMGLLSISRWAFEQGLLC--SPNNWNCMEKLLEVLIAI 168 (1962)
Q Consensus 92 G~lLl~~g~Gr~eEALe~y~rALaLD-P~DaeaW~nLG~al~~LGr~eeAr~alErALeL--dPd~~~Al~nLg~aL~~L 168 (1962)
-.+|.+. |++++|.+.|.+..+.+ +.++..|..+...+.+.|++++|+..|++..+. .|+ ...+..+..++...
T Consensus 586 I~ay~k~--G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~ 662 (1060)
T PLN03218 586 MKACANA--GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHA 662 (1060)
T ss_pred HHHHHHC--CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhC
Confidence 8888888 89999999999999987 568899999999999999999999999998876 565 56788899999999
Q ss_pred CCHHHHHHHHHHHHHhC
Q 043158 169 GDEVACLSVAELILRHW 185 (1962)
Q Consensus 169 GdyeeAL~~~~rALeLd 185 (1962)
|++++|...++.+.+..
T Consensus 663 G~~eeA~~l~~eM~k~G 679 (1060)
T PLN03218 663 GDLDKAFEILQDARKQG 679 (1060)
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 99999999999888753
No 187
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.57 E-value=0.015 Score=74.78 Aligned_cols=97 Identities=19% Similarity=0.089 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 043158 87 ALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLI 166 (1962)
Q Consensus 87 AykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~ 166 (1962)
+++.+|+.+-.. |++++|+++..+|+++.|+.++++...|+++...|++.+|..+++.|-.+|+.+.-.-...+-.+.
T Consensus 196 ~~~~lAqhyd~~--g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 196 TLYFLAQHYDYL--GDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHHh--CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence 567889999888 899999999999999999999999999999999999999999999999999999988888889999
Q ss_pred HcCCHHHHHHHHHHHHHhC
Q 043158 167 AIGDEVACLSVAELILRHW 185 (1962)
Q Consensus 167 ~LGdyeeAL~~~~rALeLd 185 (1962)
+.|+.++|...+....+-+
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HCCCHHHHHHHHHhhcCCC
Confidence 9999999999776665443
No 188
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.53 E-value=0.043 Score=67.41 Aligned_cols=124 Identities=20% Similarity=0.195 Sum_probs=100.8
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 043158 37 YHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQAVEI 116 (1962)
Q Consensus 37 YqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaL 116 (1962)
-.-|..+.+.|+.++|.+...++|+.. + | .+ |-..+-....++...=+...++++..
T Consensus 267 ~~~a~~li~l~~~~~A~~~i~~~Lk~~------~-D-----~~-----------L~~~~~~l~~~d~~~l~k~~e~~l~~ 323 (400)
T COG3071 267 VAYAERLIRLGDHDEAQEIIEDALKRQ------W-D-----PR-----------LCRLIPRLRPGDPEPLIKAAEKWLKQ 323 (400)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhc------c-C-----hh-----------HHHHHhhcCCCCchHHHHHHHHHHHh
Confidence 455677888999999999999998742 1 1 11 11122121126788888888999999
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 043158 117 DTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRH 184 (1962)
Q Consensus 117 DP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeL 184 (1962)
.|++|.+|+-||+++.+.+.+.+|..+|+.|+...|. ...+.-+|.++-++|+..+|.++++.++.+
T Consensus 324 h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 324 HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987 566788999999999999999999888743
No 189
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.53 E-value=0.029 Score=74.36 Aligned_cols=151 Identities=11% Similarity=0.045 Sum_probs=71.1
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHhcCCcccchhc--c-CCCCCchhhhH-----------HhHHHHHHHHHHHHHcCCCCH
Q 043158 38 HEGLLKLQSKEYDKAQELLESVLKDPLIANAQA--A-DGKSSDGHLLQ-----------LRFLALKNLATVFLQQGSSHY 103 (1962)
Q Consensus 38 qkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~--~-d~~~s~s~lLq-----------L~ylAykNLG~lLl~~g~Gr~ 103 (1962)
...-.|.+.|++++|.+.|++..+.+....... + ...+....++. +...+|..+-.++... |+.
T Consensus 365 ~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~--g~~ 442 (697)
T PLN03081 365 ALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYS--GLS 442 (697)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcC--CcH
Confidence 344556788999999999998764221000000 0 00000011111 1223444444444444 455
Q ss_pred HHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043158 104 ESALRCYLQAVEIDT--KDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELI 181 (1962)
Q Consensus 104 eEALe~y~rALaLDP--~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rA 181 (1962)
++|.+.|....+..+ .+...|..+..++.+.|++++|...+++. ...|+ ...|..|..++...|+.+.|...+++.
T Consensus 443 ~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~l 520 (697)
T PLN03081 443 EQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKPT-VNMWAALLTACRIHKNLELGRLAAEKL 520 (697)
T ss_pred HHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 555555555543211 12334555555555555555555555442 12222 233555555555555555555555555
Q ss_pred HHhCCCCHHHH
Q 043158 182 LRHWPSHSRAL 192 (1962)
Q Consensus 182 LeLdPd~a~Al 192 (1962)
++++|++...+
T Consensus 521 ~~~~p~~~~~y 531 (697)
T PLN03081 521 YGMGPEKLNNY 531 (697)
T ss_pred hCCCCCCCcch
Confidence 55555544333
No 190
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.51 E-value=0.044 Score=65.35 Aligned_cols=132 Identities=13% Similarity=0.150 Sum_probs=104.4
Q ss_pred HCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 043158 45 QSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVW 124 (1962)
Q Consensus 45 qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW 124 (1962)
+.+..+.|...|.++++.... .+..|...|.+-+..+ ++.+.|...|++++..-|.+.++|
T Consensus 13 r~~g~~~aR~vF~~a~~~~~~------------------~~~vy~~~A~~E~~~~-~d~~~A~~Ife~glk~f~~~~~~~ 73 (280)
T PF05843_consen 13 RTEGIEAARKVFKRARKDKRC------------------TYHVYVAYALMEYYCN-KDPKRARKIFERGLKKFPSDPDFW 73 (280)
T ss_dssp HHHHHHHHHHHHHHHHCCCCS-------------------THHHHHHHHHHHHTC-S-HHHHHHHHHHHHHHHTT-HHHH
T ss_pred HhCChHHHHHHHHHHHcCCCC------------------CHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHCCCCHHHH
Confidence 344589999999999864321 2456777788766653 677779999999999999999999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 043158 125 NQLGTLACSMGLLSISRWAFEQGLLCSPNNW---NCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSRALHVK 195 (1962)
Q Consensus 125 ~nLG~al~~LGr~eeAr~alErALeLdPd~~---~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~Al~lk 195 (1962)
......+..+|+.+.||..||+++..-|... ..|......=..-|+.+......+|+.+.-|.........
T Consensus 74 ~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f~ 147 (280)
T PF05843_consen 74 LEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLELFS 147 (280)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 9999999999999999999999999877665 5677777777888999999999999999998865444333
No 191
>PLN03077 Protein ECB2; Provisional
Probab=96.46 E-value=0.049 Score=73.83 Aligned_cols=136 Identities=12% Similarity=0.020 Sum_probs=71.7
Q ss_pred HHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC--C
Q 043158 42 LKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQAVEIDT--K 119 (1962)
Q Consensus 42 ~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP--~ 119 (1962)
.+.+.|+.++|.++|++..+... .| + ..+|..+-.++... |+.++|...|.+.....+ -
T Consensus 563 ~~~~~G~~~~A~~lf~~M~~~g~----~P-d------------~~T~~~ll~a~~~~--g~v~ea~~~f~~M~~~~gi~P 623 (857)
T PLN03077 563 GYVAHGKGSMAVELFNRMVESGV----NP-D------------EVTFISLLCACSRS--GMVTQGLEYFHSMEEKYSITP 623 (857)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCC----CC-C------------cccHHHHHHHHhhc--ChHHHHHHHHHHHHHHhCCCC
Confidence 34455666666666666554321 11 1 12333333444444 556666666665553221 1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 043158 120 DSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSRALHVKNTI 198 (1962)
Q Consensus 120 DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I 198 (1962)
+...|..+..++.+.|++++|...+++. .+.|+ +..|..|..++..-|+.+.+....+++++++|+++..+.++..+
T Consensus 624 ~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ 700 (857)
T PLN03077 624 NLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNL 700 (857)
T ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHH
Confidence 3455566666666666666666666553 23444 44555555555555666666656666666666665555554444
No 192
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.45 E-value=0.034 Score=70.80 Aligned_cols=148 Identities=14% Similarity=0.064 Sum_probs=106.1
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccc-hhc----c-CCCCCchhhhHH--hH-------HHHHHHHHHHH
Q 043158 32 HLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIAN-AQA----A-DGKSSDGHLLQL--RF-------LALKNLATVFL 96 (1962)
Q Consensus 32 eAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~-a~~----~-d~~~s~s~lLqL--~y-------lAykNLG~lLl 96 (1962)
.+.++|..-..+...|+|++|.....++|...|... +.. . =..+.+..++.+ .+ ...+..+-+++
T Consensus 11 ~~~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 11 NLEALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEY 90 (652)
T ss_pred cHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHH
Confidence 345677777778888999999999999998632110 000 0 000111222221 01 11145567778
Q ss_pred HcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-----------------------
Q 043158 97 QQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPN----------------------- 153 (1962)
Q Consensus 97 ~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd----------------------- 153 (1962)
+. +..++|+.++. -.|+.+..+...-|+++.++|+|++|...|+..++-+-+
T Consensus 91 rl--nk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q 165 (652)
T KOG2376|consen 91 RL--NKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQ 165 (652)
T ss_pred Hc--ccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHH
Confidence 88 89999999999 778888889999999999999999999999988653322
Q ss_pred --------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 043158 154 --------NWNCMEKLLEVLIAIGDEVACLSVAELILRH 184 (1962)
Q Consensus 154 --------~~~Al~nLg~aL~~LGdyeeAL~~~~rALeL 184 (1962)
..+.++|.+.++...|+|.+|++.++.|+++
T Consensus 166 ~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~ 204 (652)
T KOG2376|consen 166 SVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRI 204 (652)
T ss_pred hccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 2345789999999999999999999888665
No 193
>PLN03077 Protein ECB2; Provisional
Probab=96.43 E-value=0.04 Score=74.67 Aligned_cols=120 Identities=13% Similarity=0.090 Sum_probs=101.0
Q ss_pred HHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHH
Q 043158 43 KLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSV 122 (1962)
Q Consensus 43 L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~Dae 122 (1962)
+.+.|++++|.++|++..+...+ .| ....|..+..+|.+. |++++|.+.+++. .+.| |+.
T Consensus 599 ~~~~g~v~ea~~~f~~M~~~~gi---~P-------------~~~~y~~lv~~l~r~--G~~~eA~~~~~~m-~~~p-d~~ 658 (857)
T PLN03077 599 CSRSGMVTQGLEYFHSMEEKYSI---TP-------------NLKHYACVVDLLGRA--GKLTEAYNFINKM-PITP-DPA 658 (857)
T ss_pred HhhcChHHHHHHHHHHHHHHhCC---CC-------------chHHHHHHHHHHHhC--CCHHHHHHHHHHC-CCCC-CHH
Confidence 45679999999999998742110 11 235688899999999 8999999999875 4566 588
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043158 123 VWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELIL 182 (1962)
Q Consensus 123 aW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rAL 182 (1962)
+|..|-.++...|+.+.|..+.++.++++|+++..+..|+.+|...|++++|....+..-
T Consensus 659 ~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~ 718 (857)
T PLN03077 659 VWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMR 718 (857)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998765443
No 194
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.42 E-value=0.0045 Score=50.22 Aligned_cols=33 Identities=36% Similarity=0.597 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC
Q 043158 86 LALKNLATVFLQQGSSHYESALRCYLQAVEIDTKD 120 (1962)
Q Consensus 86 lAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~D 120 (1962)
.+|.++|.++..+ |++++|+.+|++|++++|++
T Consensus 2 ~~~~~~g~~~~~~--~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQL--GDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHT--T-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHh--CCchHHHHHHHHHHHHCcCC
Confidence 5799999999999 99999999999999999974
No 195
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=96.41 E-value=0.0042 Score=77.42 Aligned_cols=111 Identities=21% Similarity=0.223 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 043158 35 QTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQAV 114 (1962)
Q Consensus 35 alYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rAL 114 (1962)
.+=.+|-.....+.|+.|+..|-+++++++ +. +..|-|+++++... +++..|+..+.+|+
T Consensus 6 e~k~ean~~l~~~~fd~avdlysKaI~ldp-------nc-----------a~~~anRa~a~lK~--e~~~~Al~Da~kai 65 (476)
T KOG0376|consen 6 ELKNEANEALKDKVFDVAVDLYSKAIELDP-------NC-----------AIYFANRALAHLKV--ESFGGALHDALKAI 65 (476)
T ss_pred hhhhHHhhhcccchHHHHHHHHHHHHhcCC-------cc-----------eeeechhhhhheee--chhhhHHHHHHhhh
Confidence 344567777788999999999999999864 11 12344777778887 89999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 043158 115 EIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVL 165 (1962)
Q Consensus 115 aLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL 165 (1962)
++||...-+++..|.+.++++++.+|+..|+++..+.|+.+.+...+.++-
T Consensus 66 e~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 66 ELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECN 116 (476)
T ss_pred hcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999987776553
No 196
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.28 E-value=0.064 Score=56.99 Aligned_cols=96 Identities=20% Similarity=0.149 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHcCChHHHHHH
Q 043158 86 LALKNLATVFLQQGSSHYESALRCYLQAVEIDTKD----------------------SVVWNQLGTLACSMGLLSISRWA 143 (1962)
Q Consensus 86 lAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~D----------------------aeaW~nLG~al~~LGr~eeAr~a 143 (1962)
..+...|...... |+.+.+++.+.+|+.+..++ ..+...++..+...|++++|+..
T Consensus 7 ~~~~~~a~~~~~~--~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~ 84 (146)
T PF03704_consen 7 EALVREARAAARA--GDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRL 84 (146)
T ss_dssp HHHHHHHHHHHHT--T-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHC--CCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 3344445555555 67778888888887775432 24667778888999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043158 144 FEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILR 183 (1962)
Q Consensus 144 lErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALe 183 (1962)
+++++..+|-+-.++..+..++...|++.+|+..|++..+
T Consensus 85 ~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 85 LQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999977643
No 197
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.024 Score=65.86 Aligned_cols=103 Identities=13% Similarity=0.033 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh--------CCCC----------HHHHHHHHHHHHHcCChHHHHHHHHH
Q 043158 85 FLALKNLATVFLQQGSSHYESALRCYLQAVEI--------DTKD----------SVVWNQLGTLACSMGLLSISRWAFEQ 146 (1962)
Q Consensus 85 ylAykNLG~lLl~~g~Gr~eEALe~y~rALaL--------DP~D----------aeaW~nLG~al~~LGr~eeAr~alEr 146 (1962)
..+++.-|+-++.. |++.+|..+|+.|+.. .|.+ .-++.|..+|+...|+|-+++.....
T Consensus 178 v~~l~q~GN~lfk~--~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~se 255 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKL--GRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSE 255 (329)
T ss_pred hHHHHHhhhhhhhh--ccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHH
Confidence 57888999999999 9999999999999542 3444 45788999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 043158 147 GLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHS 189 (1962)
Q Consensus 147 ALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a 189 (1962)
.|..+|++..|++..|.+....=+..+|.+-+.++|+++|.-+
T Consensus 256 iL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsla 298 (329)
T KOG0545|consen 256 ILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLA 298 (329)
T ss_pred HHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhH
Confidence 9999999999999999999999999999999999999998754
No 198
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.12 E-value=0.26 Score=58.29 Aligned_cols=141 Identities=19% Similarity=0.229 Sum_probs=106.4
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 043158 32 HLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYL 111 (1962)
Q Consensus 32 eAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~ 111 (1962)
-+..+|++|+..++.|+|++|...|+++....|+.+-.. .+...++.+++.. +++++|+....
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~---------------qa~l~l~yA~Yk~--~~y~~A~~~~d 95 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSE---------------QAQLDLAYAYYKN--GEYDLALAYID 95 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccH---------------HHHHHHHHHHHhc--ccHHHHHHHHH
Confidence 456799999999999999999999999987654331111 3455677777777 89999999999
Q ss_pred HHHHhCCCCHH---HHHHHHHHHHHc--------CChHHHHHHHHHHHhcCCCC---HHHH--------------HHHHH
Q 043158 112 QAVEIDTKDSV---VWNQLGTLACSM--------GLLSISRWAFEQGLLCSPNN---WNCM--------------EKLLE 163 (1962)
Q Consensus 112 rALaLDP~Dae---aW~nLG~al~~L--------Gr~eeAr~alErALeLdPd~---~~Al--------------~nLg~ 163 (1962)
+-+.+.|++++ +.|..|.+.... ....+|...|...|..=|+. +++. ...|.
T Consensus 96 rFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~Iar 175 (254)
T COG4105 96 RFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIAR 175 (254)
T ss_pred HHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999865 566667664432 34577888889999999986 2332 33445
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCH
Q 043158 164 VLIAIGDEVACLSVAELILRHWPSHS 189 (1962)
Q Consensus 164 aL~~LGdyeeAL~~~~rALeLdPd~a 189 (1962)
.+..-|.+.+|+.-++..++--|+-.
T Consensus 176 yY~kr~~~~AA~nR~~~v~e~y~~t~ 201 (254)
T COG4105 176 YYLKRGAYVAAINRFEEVLENYPDTS 201 (254)
T ss_pred HHHHhcChHHHHHHHHHHHhcccccc
Confidence 66777889999988888888766554
No 199
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.00 E-value=0.013 Score=47.04 Aligned_cols=33 Identities=27% Similarity=0.473 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC
Q 043158 86 LALKNLATVFLQQGSSHYESALRCYLQAVEIDTKD 120 (1962)
Q Consensus 86 lAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~D 120 (1962)
.+|.++|.++... |++++|+++|++|++++|+|
T Consensus 2 ~~~~~lg~~~~~~--~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQL--GNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHT--T-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHh--CCHHHHHHHHHHHHHHCcCC
Confidence 5789999999999 99999999999999999986
No 200
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.99 E-value=0.09 Score=62.15 Aligned_cols=150 Identities=15% Similarity=0.172 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCccc----------chhccC-------CCCCchhhhHHhHHHHHHHHHHHH
Q 043158 34 TQTYHEGLLKLQSKEYDKAQELLESVLKDPLIA----------NAQAAD-------GKSSDGHLLQLRFLALKNLATVFL 96 (1962)
Q Consensus 34 lalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk----------~a~~~d-------~~~s~s~lLqL~ylAykNLG~lLl 96 (1962)
..+.-.|..+...|++++|.++..+...++... ....+. ...-..++.| .+.+|.+++.
T Consensus 109 i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQ-LA~awv~la~--- 184 (299)
T KOG3081|consen 109 IDLLLAAIIYMHDGDFDEALKALHLGENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQ-LAQAWVKLAT--- 184 (299)
T ss_pred HHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHH-HHHHHHHHhc---
Confidence 444556677788899999998888754443100 000000 0000011111 2344544443
Q ss_pred HcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 043158 97 QQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLS 176 (1962)
Q Consensus 97 ~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~ 176 (1962)
|.+.+.+|.-.|++--+.-|..+......+.+++.+|++++|...++.||..++++|+.+.|+..+-..+|...++..
T Consensus 185 --ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 185 --GGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTE 262 (299)
T ss_pred --cchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHH
Confidence 325577777788877777777777888888888888888888888888888888888888888777777777666554
Q ss_pred -HHHHHHHhCCCCH
Q 043158 177 -VAELILRHWPSHS 189 (1962)
Q Consensus 177 -~~~rALeLdPd~a 189 (1962)
...+....+|.|+
T Consensus 263 r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 263 RNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHHhcCCcch
Confidence 2244444455544
No 201
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.97 E-value=0.19 Score=59.60 Aligned_cols=101 Identities=15% Similarity=0.120 Sum_probs=81.3
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 043158 93 TVFLQQGSSHYESALRCYLQAVEIDTKD-----SVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIA 167 (1962)
Q Consensus 93 ~lLl~~g~Gr~eEALe~y~rALaLDP~D-----aeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~ 167 (1962)
+++.++ .+++-|....+++.++|.+. +.+|.+++.- -+.+.+|-+.|+.--+.-|-.|..+...+.+...
T Consensus 145 qI~lk~--~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~g---gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~ 219 (299)
T KOG3081|consen 145 QILLKM--HRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATG---GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQ 219 (299)
T ss_pred HHHHHH--HHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhcc---chhhhhHHHHHHHHhcccCCChHHHccHHHHHHH
Confidence 455555 67899999999999988764 3445444432 3558899999999888667778899999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 043158 168 IGDEVACLSVAELILRHWPSHSRALHVKNTI 198 (1962)
Q Consensus 168 LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I 198 (1962)
+|||++|....+.||..+++++..+.+.-..
T Consensus 220 ~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~ 250 (299)
T KOG3081|consen 220 LGRYEEAESLLEEALDKDAKDPETLANLIVL 250 (299)
T ss_pred hcCHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 9999999999999999999999988887554
No 202
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.68 E-value=0.028 Score=66.87 Aligned_cols=62 Identities=13% Similarity=0.209 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q 043158 101 SHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLL 162 (1962)
Q Consensus 101 Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg 162 (1962)
|..++|...|+.|++++|++++++..+|.....-++.-+|-.||-+||.++|.|-+|+.|.+
T Consensus 130 Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 130 GKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred cchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 45555555555555555555555555555555555555555555555555555555555554
No 203
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.68 E-value=0.07 Score=61.41 Aligned_cols=134 Identities=12% Similarity=-0.007 Sum_probs=97.2
Q ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 043158 31 SHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCY 110 (1962)
Q Consensus 31 eeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y 110 (1962)
+.|.-+|.+|..+-..|=++-|.--|.++|++.| + -..+++-||..+... |+++.|.+.|
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P-------~-----------m~~vfNyLG~Yl~~a--~~fdaa~eaF 122 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRP-------D-----------MPEVFNYLGIYLTQA--GNFDAAYEAF 122 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCC-------C-----------cHHHHHHHHHHHHhc--ccchHHHHHh
Confidence 3455556666666555666666655666665432 1 146788899999998 9999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhC
Q 043158 111 LQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLS-VAELILRHW 185 (1962)
Q Consensus 111 ~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~-~~~rALeLd 185 (1962)
.-.+++||..--+..|.|..+.--||+..|..-+.+--+-||++|---..|=..-.. -+..+|.. ..+|+-..+
T Consensus 123 ds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k-~dP~~A~tnL~qR~~~~d 197 (297)
T COG4785 123 DSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQK-LDPKQAKTNLKQRAEKSD 197 (297)
T ss_pred hhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhh-CCHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999987543222222222 23444444 336666654
No 204
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.62 E-value=0.015 Score=46.99 Aligned_cols=32 Identities=22% Similarity=0.297 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 043158 122 VVWNQLGTLACSMGLLSISRWAFEQGLLCSPN 153 (1962)
Q Consensus 122 eaW~nLG~al~~LGr~eeAr~alErALeLdPd 153 (1962)
++|+.+|.++..+|++++|..+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 45666666666666666666666666666664
No 205
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.53 E-value=0.47 Score=54.29 Aligned_cols=98 Identities=15% Similarity=0.121 Sum_probs=78.8
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHH--HHHHH
Q 043158 88 LKNLATVFLQQGSSHYESALRCYLQAVEIDTKD---SVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNC--MEKLL 162 (1962)
Q Consensus 88 ykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~D---aeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~A--l~nLg 162 (1962)
-.-++..+.+. +++++|+..+..++..--+. +-+-.+||++...+|.+++|+..+...- ...+.+ ..-.|
T Consensus 92 aL~lAk~~ve~--~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~---~~~w~~~~~elrG 166 (207)
T COG2976 92 ALELAKAEVEA--NNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIK---EESWAAIVAELRG 166 (207)
T ss_pred HHHHHHHHHhh--ccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc---cccHHHHHHHHhh
Confidence 34577778888 89999999999999764443 4567899999999999999998887543 233333 46778
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 043158 163 EVLIAIGDEVACLSVAELILRHWPSHSR 190 (1962)
Q Consensus 163 ~aL~~LGdyeeAL~~~~rALeLdPd~a~ 190 (1962)
.+|...|+..+|...|.+|++.+++.+.
T Consensus 167 Dill~kg~k~~Ar~ay~kAl~~~~s~~~ 194 (207)
T COG2976 167 DILLAKGDKQEARAAYEKALESDASPAA 194 (207)
T ss_pred hHHHHcCchHHHHHHHHHHHHccCChHH
Confidence 9999999999999999999999866553
No 206
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.37 E-value=0.012 Score=71.01 Aligned_cols=99 Identities=7% Similarity=0.077 Sum_probs=89.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 043158 99 GSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVA 178 (1962)
Q Consensus 99 g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~ 178 (1962)
+.|.+++|++.|.+|+.++|..+.++-+.|.++..+++...|+.-|..|++++|+.+..+--.|.+-..+|++++|.+.+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 33899999999999999999999999999999999999999999999999999999999988889999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHH
Q 043158 179 ELILRHWPSHSRALHVKNT 197 (1962)
Q Consensus 179 ~rALeLdPd~a~Al~lk~~ 197 (1962)
+.|++++=+-.....++..
T Consensus 206 ~~a~kld~dE~~~a~lKeV 224 (377)
T KOG1308|consen 206 ALACKLDYDEANSATLKEV 224 (377)
T ss_pred HHHHhccccHHHHHHHHHh
Confidence 9999998765544444444
No 207
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=95.35 E-value=0.049 Score=65.75 Aligned_cols=107 Identities=21% Similarity=0.159 Sum_probs=90.6
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 043158 32 HLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYL 111 (1962)
Q Consensus 32 eAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~ 111 (1962)
.|.-.=..|..+.+..||..|...|-+.|+..- + +. .++...|.|++.+.+.. |+|..|+....
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc---~---D~--------dlnavLY~NRAAa~~~l--~NyRs~l~Dcs 143 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKC---A---DP--------DLNAVLYTNRAAAQLYL--GNYRSALNDCS 143 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcC---C---Cc--------cHHHHHHhhHHHHHHHH--HHHHHHHHHHH
Confidence 345555689999999999999999999997420 0 11 12457899999999999 89999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 043158 112 QAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNN 154 (1962)
Q Consensus 112 rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~ 154 (1962)
+|+.++|++.-++++-+.|+..+.++.+|....+..+.++...
T Consensus 144 ~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~ 186 (390)
T KOG0551|consen 144 AALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEA 186 (390)
T ss_pred HHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 9999999999999999999999999999999999888876543
No 208
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.34 E-value=0.11 Score=52.59 Aligned_cols=78 Identities=12% Similarity=0.021 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043158 105 SALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNN--WNCMEKLLEVLIAIGDEVACLSVAELIL 182 (1962)
Q Consensus 105 EALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~--~~Al~nLg~aL~~LGdyeeAL~~~~rAL 182 (1962)
..++.++++++.+|+|+++.+.+|..+...|++++|+..+-..+..+|++ -.+...+-.++..+|.-+....-|++-|
T Consensus 6 ~~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 6 PDIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred ccHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999887 6667777788888888666666666544
No 209
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.23 E-value=0.019 Score=69.34 Aligned_cols=129 Identities=18% Similarity=0.113 Sum_probs=99.1
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 043158 32 HLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYL 111 (1962)
Q Consensus 32 eAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~ 111 (1962)
.|...--+|...+..|.+++|++.|..++.+++ . ....|.++|.+++.+ ++...|+..|.
T Consensus 113 qa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp-------~-----------~a~l~~kr~sv~lkl--~kp~~airD~d 172 (377)
T KOG1308|consen 113 QANDKKVQASEALNDGEFDTAIELFTSAIELNP-------P-----------LAILYAKRASVFLKL--KKPNAAIRDCD 172 (377)
T ss_pred HHHHHHHHHHHHhcCcchhhhhcccccccccCC-------c-----------hhhhcccccceeeec--cCCchhhhhhh
Confidence 344455567778888999999999999998754 1 135677899999999 88999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043158 112 QAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELI 181 (1962)
Q Consensus 112 rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rA 181 (1962)
.|+.++|+.+.-+--.|.+.+.+|.+++|...|+.|.+++=+. .+-..|..+...++...+=-..++++
T Consensus 173 ~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~dE-~~~a~lKeV~p~a~ki~e~~~k~er~ 241 (377)
T KOG1308|consen 173 FAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYDE-ANSATLKEVFPNAGKIEEHRRKYERA 241 (377)
T ss_pred hhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhccccH-HHHHHHHHhccchhhhhhchhHHHHH
Confidence 9999999999999999999999999999999999999987542 22233445554444444433333333
No 210
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.22 E-value=0.16 Score=59.83 Aligned_cols=137 Identities=18% Similarity=0.147 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHH-
Q 043158 34 TQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQ- 112 (1962)
Q Consensus 34 lalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~r- 112 (1962)
...|-.+-.++..|.|.=...+|.++++..+-. .......||.+.++. |+.+.|-..|++
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~-----------------~p~L~s~Lgr~~MQ~--GD~k~a~~yf~~v 238 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQ-----------------EPQLLSGLGRISMQI--GDIKTAEKYFQDV 238 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcc-----------------cHHHHHHHHHHHHhc--ccHHHHHHHHHHH
Confidence 455666777888899999999999998743200 113345789999998 899999888883
Q ss_pred ---HHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 043158 113 ---AVEID--TKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPS 187 (1962)
Q Consensus 113 ---ALaLD--P~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd 187 (1962)
+=.++ -...-+..|.+.++.-.+++..|...|.+.+..||.++-+-+|.+.++.-+|+..+|+...+.++...|.
T Consensus 239 ek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 239 EKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred HHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 33333 3456788888999999999999999999999999999999999999999999999999999999999998
Q ss_pred CH
Q 043158 188 HS 189 (1962)
Q Consensus 188 ~a 189 (1962)
+.
T Consensus 319 ~~ 320 (366)
T KOG2796|consen 319 HY 320 (366)
T ss_pred cc
Confidence 75
No 211
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.16 E-value=0.32 Score=58.54 Aligned_cols=142 Identities=16% Similarity=0.120 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 043158 34 TQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQA 113 (1962)
Q Consensus 34 lalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rA 113 (1962)
...+..|..+++.|++.+|..+|..+++..+ +. ..+-..++.+|... |+.++|...+...
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~-------~~-----------~~~~~~la~~~l~~--g~~e~A~~iL~~l 194 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAP-------EN-----------SEAKLLLAECLLAA--GDVEAAQAILAAL 194 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCc-------cc-----------chHHHHHHHHHHHc--CChHHHHHHHHhC
Confidence 4567888999999999999999999998543 11 13455688888888 8888887776642
Q ss_pred HHhCCCCHHHHHHHH--HHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 043158 114 VEIDTKDSVVWNQLG--TLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSRA 191 (1962)
Q Consensus 114 LaLDP~DaeaW~nLG--~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~A 191 (1962)
=.-.. +.......+ .++.+.....+ ...+++.+..||++..+.+.|+.++...||+++|+..+-..++.|-+....
T Consensus 195 P~~~~-~~~~~~l~a~i~ll~qaa~~~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~ 272 (304)
T COG3118 195 PLQAQ-DKAAHGLQAQIELLEQAAATPE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDG 272 (304)
T ss_pred cccch-hhHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCc
Confidence 11111 111111111 22333333332 356889999999999999999999999999999999998888887655444
Q ss_pred HHHHHH
Q 043158 192 LHVKNT 197 (1962)
Q Consensus 192 l~lk~~ 197 (1962)
..-+..
T Consensus 273 ~~Rk~l 278 (304)
T COG3118 273 EARKTL 278 (304)
T ss_pred HHHHHH
Confidence 433333
No 212
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.14 E-value=0.2 Score=59.75 Aligned_cols=72 Identities=17% Similarity=0.030 Sum_probs=65.2
Q ss_pred HHHhCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 043158 113 AVEIDT--KDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRH 184 (1962)
Q Consensus 113 ALaLDP--~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeL 184 (1962)
.++.-| ++++...+.|.++.+-|++++|..-|..|++...-++..-+|++.+.++.|+|+.|+.+...+++.
T Consensus 134 LveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 134 LVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred HHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 355556 689999999999999999999999999999999999999999999999999999999988766655
No 213
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.08 E-value=0.069 Score=61.87 Aligned_cols=106 Identities=20% Similarity=0.160 Sum_probs=79.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH-HHHHHHHHH-----------HHHc
Q 043158 101 SHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNW-NCMEKLLEV-----------LIAI 168 (1962)
Q Consensus 101 Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~-~Al~nLg~a-----------L~~L 168 (1962)
++.+.|.+.|.+||++-|.+..-|+++|....+.|+++.|..+|++.|++||.+. -+-..|+.+ -+.-
T Consensus 9 ~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~gaa~kLa~lg~~e~p~~pP~aYVe 88 (287)
T COG4976 9 GDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGGAALKLAVLGRGETPEKPPSAYVE 88 (287)
T ss_pred CChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccchhhhHHhhcCCCCCCCCchHHHH
Confidence 8999999999999999999999999999999999999999999999999999753 333333211 0111
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhhcCCCCC
Q 043158 169 GDEVACLSVAELILRHWPSHSRALHVKNTIEETEPVPY 206 (1962)
Q Consensus 169 GdyeeAL~~~~rALeLdPd~a~Al~lk~~I~~adP~~f 206 (1962)
.-+++-.+.|+..|--+=+|.....+...|...++-+|
T Consensus 89 ~LFD~~Ae~Fd~~LVdkL~Y~vP~~l~emI~~~~~g~F 126 (287)
T COG4976 89 TLFDQYAERFDHILVDKLGYSVPELLAEMIGKADLGPF 126 (287)
T ss_pred HHHHHHHHHHHHHHHHHhcCccHHHHHHHHHhccCCcc
Confidence 12334445566666555677777778888877776653
No 214
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=95.06 E-value=0.7 Score=57.32 Aligned_cols=131 Identities=23% Similarity=0.207 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 043158 33 LTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQ 112 (1962)
Q Consensus 33 AlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~r 112 (1962)
|....+.|+.-+-.|+|.+|+.+..+.-+... .| ..+|.--+.+..++ |+.+.|=.++.+
T Consensus 84 a~~~~~egl~~l~eG~~~qAEkl~~rnae~~e----~p--------------~l~~l~aA~AA~qr--gd~~~an~yL~e 143 (400)
T COG3071 84 ARKALNEGLLKLFEGDFQQAEKLLRRNAEHGE----QP--------------VLAYLLAAEAAQQR--GDEDRANRYLAE 143 (400)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCc----ch--------------HHHHHHHHHHHHhc--ccHHHHHHHHHH
Confidence 45667788888889999999999988654321 11 13444445556667 899999999999
Q ss_pred HHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043158 113 AVEIDTKD-SVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILR 183 (1962)
Q Consensus 113 ALaLDP~D-aeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALe 183 (1962)
|.++.+++ -.+....++++...|+++.|+.-..++++..|.++.++.-...++..+|++.+......+.-+
T Consensus 144 aae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~k 215 (400)
T COG3071 144 AAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRK 215 (400)
T ss_pred HhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 99995443 567778899999999999999999999999999999999999999999999999886654433
No 215
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.05 E-value=0.084 Score=64.17 Aligned_cols=135 Identities=19% Similarity=0.224 Sum_probs=105.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 043158 36 TYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQAVE 115 (1962)
Q Consensus 36 lYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rALa 115 (1962)
..-.|..+...+.|++|++.|+.+++..- + .+++++ ....+..||.++.+. .++++|+-+..+|++
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~-------~---~~D~~L--Elqvcv~Lgslf~~l--~D~~Kal~f~~kA~~ 190 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAH-------N---NDDAML--ELQVCVSLGSLFAQL--KDYEKALFFPCKAAE 190 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhh-------c---cCCcee--eeehhhhHHHHHHHH--HhhhHHhhhhHhHHH
Confidence 33455566666788888888888886421 0 012222 235688899999998 899999999999988
Q ss_pred hCCC----C------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 043158 116 IDTK----D------SVVWNQLGTLACSMGLLSISRWAFEQGLLCS------PNNWNCMEKLLEVLIAIGDEVACLSVAE 179 (1962)
Q Consensus 116 LDP~----D------aeaW~nLG~al~~LGr~eeAr~alErALeLd------Pd~~~Al~nLg~aL~~LGdyeeAL~~~~ 179 (1962)
+--. | ..+.|+++.+++.+|+...|.+|.+.|.++. |-++.++.-+|.++...||.+.|..-|+
T Consensus 191 lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe 270 (518)
T KOG1941|consen 191 LVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYE 270 (518)
T ss_pred HHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHH
Confidence 7432 2 4678899999999999999999999998865 4557778899999999999999999998
Q ss_pred HHHHh
Q 043158 180 LILRH 184 (1962)
Q Consensus 180 rALeL 184 (1962)
.|...
T Consensus 271 ~Am~~ 275 (518)
T KOG1941|consen 271 QAMGT 275 (518)
T ss_pred HHHHH
Confidence 88764
No 216
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.97 E-value=0.55 Score=57.24 Aligned_cols=135 Identities=17% Similarity=0.098 Sum_probs=89.8
Q ss_pred HHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCH
Q 043158 42 LKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDS 121 (1962)
Q Consensus 42 ~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~Da 121 (1962)
.++...+|..|+.+++-.+..+. +- + + ..-.=+|.++..+ |++++|+.-|.-+.+-+..++
T Consensus 31 dfls~rDytGAislLefk~~~~~----EE-E-----~-------~~~lWia~C~fhL--gdY~~Al~~Y~~~~~~~~~~~ 91 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDR----EE-E-----D-------SLQLWIAHCYFHL--GDYEEALNVYTFLMNKDDAPA 91 (557)
T ss_pred HHHhcccchhHHHHHHHhhccch----hh-h-----H-------HHHHHHHHHHHhh--ccHHHHHHHHHHHhccCCCCc
Confidence 34567888888888887765421 00 0 0 1111245666677 789999999988888888888
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHH------------------------------HHHHHHHHHHcCCH
Q 043158 122 VVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNC------------------------------MEKLLEVLIAIGDE 171 (1962)
Q Consensus 122 eaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~A------------------------------l~nLg~aL~~LGdy 171 (1962)
++|.+|+.+..-+|.|.+|...-++|- +.|.+ ...|+.+.+..-.|
T Consensus 92 el~vnLAcc~FyLg~Y~eA~~~~~ka~----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HY 167 (557)
T KOG3785|consen 92 ELGVNLACCKFYLGQYIEAKSIAEKAP----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHY 167 (557)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhhCC----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHH
Confidence 999999999999999988877766542 22221 12333444555668
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHhh
Q 043158 172 VACLSVAELILRHWPSHSRALHVKNTIE 199 (1962)
Q Consensus 172 eeAL~~~~rALeLdPd~a~Al~lk~~I~ 199 (1962)
.+|+..|.+.|.-+|.+...-+..+..+
T Consensus 168 QeAIdvYkrvL~dn~ey~alNVy~ALCy 195 (557)
T KOG3785|consen 168 QEAIDVYKRVLQDNPEYIALNVYMALCY 195 (557)
T ss_pred HHHHHHHHHHHhcChhhhhhHHHHHHHH
Confidence 8899999998888888754333444433
No 217
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=94.82 E-value=0.045 Score=69.29 Aligned_cols=115 Identities=15% Similarity=0.091 Sum_probs=98.1
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 043158 90 NLATVFLQQGSSHYESALRCYLQAVEIDTKDSV-VWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAI 168 (1962)
Q Consensus 90 NLG~lLl~~g~Gr~eEALe~y~rALaLDP~Dae-aW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~L 168 (1962)
|+|.+|.+.. |+...|+.|+.+|+-..|.... ...+|++++..-|-.-.|-..+.++|.++-..|..++-+|.++..|
T Consensus 611 n~aglywr~~-gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l 689 (886)
T KOG4507|consen 611 NEAGLYWRAV-GNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLAL 689 (886)
T ss_pred ecccceeeec-CCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHH
Confidence 4444444432 8999999999999999997543 4689999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhhcCCCC
Q 043158 169 GDEVACLSVAELILRHWPSHSRALHVKNTIEETEPVP 205 (1962)
Q Consensus 169 GdyeeAL~~~~rALeLdPd~a~Al~lk~~I~~adP~~ 205 (1962)
.+.+.|+++++.|++++|+++....-+..|.-...++
T Consensus 690 ~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c~~~~~ 726 (886)
T KOG4507|consen 690 KNISGALEAFRQALKLTTKCPECENSLKLIRCMQFYP 726 (886)
T ss_pred hhhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhhhhh
Confidence 9999999999999999999998776666665444444
No 218
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=94.79 E-value=0.11 Score=65.95 Aligned_cols=100 Identities=21% Similarity=0.209 Sum_probs=83.3
Q ss_pred CCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 043158 46 SKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWN 125 (1962)
Q Consensus 46 qGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~ 125 (1962)
+|+...|.+++.++|...|.. .+-...|||+++... |-..+|-..+.++|.+.-..|-.++
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~-----------------~~v~~v~la~~~~~~--~~~~da~~~l~q~l~~~~sepl~~~ 680 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQ-----------------QDVPLVNLANLLIHY--GLHLDATKLLLQALAINSSEPLTFL 680 (886)
T ss_pred cCCcHHHHHHHHHHhccChhh-----------------hcccHHHHHHHHHHh--hhhccHHHHHHHHHhhcccCchHHH
Confidence 366666666666666543211 134578999999998 7899999999999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 043158 126 QLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEV 164 (1962)
Q Consensus 126 nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~a 164 (1962)
-+|+++..+.+.+.|+.+|+.|+.++|+++.+-..|..+
T Consensus 681 ~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 681 SLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred hcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 999999999999999999999999999999998877644
No 219
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=94.59 E-value=0.18 Score=60.16 Aligned_cols=102 Identities=17% Similarity=0.146 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 043158 86 LALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACS-MGLLSISRWAFEQGLLCSPNNWNCMEKLLEV 164 (1962)
Q Consensus 86 lAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~-LGr~eeAr~alErALeLdPd~~~Al~nLg~a 164 (1962)
.+|..+..+..+. +..+.|...|.+|+...+....+|...|.+-.. .++.+.|+..||++++.-|.+...|.....-
T Consensus 2 ~v~i~~m~~~~r~--~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRT--EGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4677788888887 669999999999997777789999999999666 5666669999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCH
Q 043158 165 LIAIGDEVACLSVAELILRHWPSHS 189 (1962)
Q Consensus 165 L~~LGdyeeAL~~~~rALeLdPd~a 189 (1962)
|..+|+.+.|...|++++..-|...
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~ 104 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEK 104 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchh
Confidence 9999999999999999998866655
No 220
>PRK10941 hypothetical protein; Provisional
Probab=94.52 E-value=0.2 Score=59.89 Aligned_cols=79 Identities=13% Similarity=0.084 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhh
Q 043158 122 VVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSRALHVKNTIEE 200 (1962)
Q Consensus 122 eaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I~~ 200 (1962)
....||-.++.+.++++.|+.|.++.+.++|++|.-+...|.++.++|.+..|+.-++..++.-|+++.+..++..+.+
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 4567888899999999999999999999999999999999999999999999999999999999999999988877754
No 221
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.21 E-value=0.25 Score=60.02 Aligned_cols=107 Identities=16% Similarity=0.037 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------------------------
Q 043158 85 FLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGL---------------------------- 136 (1962)
Q Consensus 85 ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr---------------------------- 136 (1962)
...+.|||.+..-+ |.+.+|...-. -.|+.+-.-+.|-.+..++|+
T Consensus 91 ~el~vnLAcc~FyL--g~Y~eA~~~~~----ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR 164 (557)
T KOG3785|consen 91 AELGVNLACCKFYL--GQYIEAKSIAE----KAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMR 164 (557)
T ss_pred cccchhHHHHHHHH--HHHHHHHHHHh----hCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHH
Confidence 45678888888877 77888865443 346666655555555556554
Q ss_pred --hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 043158 137 --LSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSRALHVKNT 197 (1962)
Q Consensus 137 --~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~ 197 (1962)
|.+|+..|.++|.-+|+....-..++.+++.+.-|+-+.+.+.--|...|+.+.|..+++-
T Consensus 165 ~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkac 227 (557)
T KOG3785|consen 165 MHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKAC 227 (557)
T ss_pred HHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 7788888888888888888888888888888888888888888888888888888777644
No 222
>PRK10941 hypothetical protein; Provisional
Probab=94.15 E-value=0.19 Score=60.02 Aligned_cols=71 Identities=14% Similarity=0.136 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHH
Q 043158 86 LALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCM 158 (1962)
Q Consensus 86 lAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al 158 (1962)
....|+-.++.+. ++++.|+.+-++.+.++|+|+.-|+..|.++.++|.+..|+.-|+.-++..|+.+.+.
T Consensus 182 Rml~nLK~~~~~~--~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 182 KLLDTLKAALMEE--KQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHHHHHc--CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 4567888999998 8999999999999999999999999999999999999999999999999999998874
No 223
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=94.12 E-value=0.15 Score=60.97 Aligned_cols=82 Identities=18% Similarity=0.088 Sum_probs=73.4
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043158 102 HYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELI 181 (1962)
Q Consensus 102 r~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rA 181 (1962)
...||+.++..|.+ ..+.|+.+.|...|+.|++++|++++++...|.....-.+.-+|-.+|-+|
T Consensus 112 ~~kEA~~Al~~A~~---------------~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~A 176 (472)
T KOG3824|consen 112 KVKEAILALKAAGR---------------SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKA 176 (472)
T ss_pred hhHHHHHHHHHHHH---------------HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhhee
Confidence 46777777776654 367899999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHh
Q 043158 182 LRHWPSHSRALHVKNTI 198 (1962)
Q Consensus 182 LeLdPd~a~Al~lk~~I 198 (1962)
|.++|.+.+|+.++.+-
T Consensus 177 LtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 177 LTISPGNSEALVNRART 193 (472)
T ss_pred eeeCCCchHHHhhhhcc
Confidence 99999999999998763
No 224
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=94.04 E-value=0.079 Score=42.80 Aligned_cols=32 Identities=31% Similarity=0.504 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC
Q 043158 86 LALKNLATVFLQQGSSHYESALRCYLQAVEIDTK 119 (1962)
Q Consensus 86 lAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~ 119 (1962)
.+|.++|.++.++ |++++|+.+|++|++++|+
T Consensus 2 ~~~~~lg~~y~~~--~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQL--GDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHT--TSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHHHhhCCC
Confidence 5799999999999 9999999999999999995
No 225
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=93.84 E-value=0.077 Score=39.47 Aligned_cols=32 Identities=22% Similarity=0.221 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 043158 122 VVWNQLGTLACSMGLLSISRWAFEQGLLCSPN 153 (1962)
Q Consensus 122 eaW~nLG~al~~LGr~eeAr~alErALeLdPd 153 (1962)
.+|+++|.++..+|+++.|+.+|+++++++|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 34555666666666666666666666655554
No 226
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.67 E-value=0.66 Score=59.06 Aligned_cols=61 Identities=23% Similarity=0.193 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043158 121 SVVWNQLGTLACSMGLLSISRWAFEQGLLCSPN--NWNCMEKLLEVLIAIGDEVACLSVAELI 181 (1962)
Q Consensus 121 aeaW~nLG~al~~LGr~eeAr~alErALeLdPd--~~~Al~nLg~aL~~LGdyeeAL~~~~rA 181 (1962)
+-+-++||.++.++|+.+||+..|+..++..|. +...++||..+|..+++|.++...+.+-
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 456688999999999999999999999988775 6778999999999999999998877654
No 227
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=93.64 E-value=0.74 Score=49.16 Aligned_cols=99 Identities=15% Similarity=0.120 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHh----
Q 043158 86 LALKNLATVFLQQGSSHYESALRCYLQAVEIDTK------------DSVVWNQLGTLACSMGLLSISRWAFEQGLL---- 149 (1962)
Q Consensus 86 lAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~------------DaeaW~nLG~al~~LGr~eeAr~alErALe---- 149 (1962)
.+|..|+..-.+...|-+++|...+++|.+..-+ |+-++-.|+.++..+|+|++++..-++||.
T Consensus 8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNR 87 (144)
T PF12968_consen 8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNR 87 (144)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhh
Confidence 4566555554443227899999999999876543 455677888999999999999998888886
Q ss_pred ---cCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 043158 150 ---CSPNNWN----CMEKLLEVLIAIGDEVACLSVAELILRH 184 (1962)
Q Consensus 150 ---LdPd~~~----Al~nLg~aL~~LGdyeeAL~~~~rALeL 184 (1962)
++.+.-. +.++.+.+|..+|+.++|+..|+.+-+.
T Consensus 88 RGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 88 RGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp H--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 5555433 3488899999999999999999888764
No 228
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=93.58 E-value=0.2 Score=46.15 Aligned_cols=45 Identities=20% Similarity=0.286 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhh
Q 043158 156 NCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSRALHVKNTIEE 200 (1962)
Q Consensus 156 ~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I~~ 200 (1962)
++++-++..++.+|+|..|..+++.+|+.+|++..|..++..|..
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~ 46 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIED 46 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Confidence 567888888888999999999889999999998888888877643
No 229
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=93.49 E-value=0.96 Score=62.74 Aligned_cols=123 Identities=22% Similarity=0.146 Sum_probs=102.5
Q ss_pred HHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC--C
Q 043158 43 KLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQAVEIDTK--D 120 (1962)
Q Consensus 43 L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~--D 120 (1962)
|..-+.+++|.++|++.++--. + ....|..+|.+++.+ ++.++|-+.+.+||.--|. +
T Consensus 1540 y~k~ek~~~A~ell~~m~KKF~----q--------------~~~vW~~y~~fLl~~--ne~~aa~~lL~rAL~~lPk~eH 1599 (1710)
T KOG1070|consen 1540 YEKSEKNDEADELLRLMLKKFG----Q--------------TRKVWIMYADFLLRQ--NEAEAARELLKRALKSLPKQEH 1599 (1710)
T ss_pred HHHhhcchhHHHHHHHHHHHhc----c--------------hhhHHHHHHHHHhcc--cHHHHHHHHHHHHHhhcchhhh
Confidence 3444777888888887775310 0 136788899999988 7888899999999999998 8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 043158 121 SVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHW 185 (1962)
Q Consensus 121 aeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLd 185 (1962)
.++....+++-.+.|+.+.+|..||-.|.-.|.-.+.|.-....-...|+..-+...|+|++.+.
T Consensus 1600 v~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1600 VEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 89999999999999999999999999999999999999888888888899999999999988774
No 230
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=93.47 E-value=0.42 Score=62.82 Aligned_cols=97 Identities=15% Similarity=0.116 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHH----------HHhCC----------CCHHHHHHHHHHHHHcCChHHHHHHHH
Q 043158 86 LALKNLATVFLQQGSSHYESALRCYLQA----------VEIDT----------KDSVVWNQLGTLACSMGLLSISRWAFE 145 (1962)
Q Consensus 86 lAykNLG~lLl~~g~Gr~eEALe~y~rA----------LaLDP----------~DaeaW~nLG~al~~LGr~eeAr~alE 145 (1962)
..|+|.|.-+..+ ++.+.|+++|+++ |.-+| .|+.+|.--|.-+...|..+.|+..|+
T Consensus 859 ~Tyy~yA~~Lear--~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~ 936 (1416)
T KOG3617|consen 859 NTYYNYAKYLEAR--RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYS 936 (1416)
T ss_pred hhHHHHHHHHHhh--ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHH
Confidence 5799999999998 8999999999965 33344 577899999999999999999999998
Q ss_pred HHHh---------------------cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 043158 146 QGLL---------------------CSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRH 184 (1962)
Q Consensus 146 rALe---------------------LdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeL 184 (1962)
.|-. -...+..|-+.||..|...|+..+|+.+|.||-..
T Consensus 937 ~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 937 SAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAF 996 (1416)
T ss_pred HhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 7643 22344556677888888889999999988877554
No 231
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.46 E-value=2.3 Score=53.19 Aligned_cols=71 Identities=15% Similarity=0.153 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHc---------CChHHHHHHHHHHHhcCCCCH
Q 043158 87 ALKNLATVFLQQG-SSHYESALRCYLQ-AVEIDTKDSVVWNQLGTLACSM---------GLLSISRWAFEQGLLCSPNNW 155 (1962)
Q Consensus 87 AykNLG~lLl~~g-~Gr~eEALe~y~r-ALaLDP~DaeaW~nLG~al~~L---------Gr~eeAr~alErALeLdPd~~ 155 (1962)
.-..+|.++.+++ .|+.++|+..+.. ....++.+++.+..+|+++..+ ..++.|+.+|++|.+++|++.
T Consensus 181 i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y 260 (374)
T PF13281_consen 181 IKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYY 260 (374)
T ss_pred HHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcccc
Confidence 3446777777721 2899999999999 4555778999999999998754 357899999999999998774
Q ss_pred HH
Q 043158 156 NC 157 (1962)
Q Consensus 156 ~A 157 (1962)
++
T Consensus 261 ~G 262 (374)
T PF13281_consen 261 SG 262 (374)
T ss_pred ch
Confidence 43
No 232
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=93.44 E-value=0.53 Score=59.70 Aligned_cols=96 Identities=14% Similarity=-0.004 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHH
Q 043158 103 YESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGD-EVACLSVAELI 181 (1962)
Q Consensus 103 ~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGd-yeeAL~~~~rA 181 (1962)
...-+..|++|+..-+.|+.+|.+...-..+.+.+.+-...|.++|..+|++|+.|.--+.=.+..+. .+.|.+.+.++
T Consensus 87 ~~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 87 PNRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence 45567889999999999999999999999999999999999999999999999999999988888887 88888899999
Q ss_pred HHhCCCCHHHHHHHHHh
Q 043158 182 LRHWPSHSRALHVKNTI 198 (1962)
Q Consensus 182 LeLdPd~a~Al~lk~~I 198 (1962)
|+.+|+.+..|.--..+
T Consensus 167 LR~npdsp~Lw~eyfrm 183 (568)
T KOG2396|consen 167 LRFNPDSPKLWKEYFRM 183 (568)
T ss_pred hhcCCCChHHHHHHHHH
Confidence 99999999877554443
No 233
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.42 E-value=0.2 Score=62.79 Aligned_cols=80 Identities=19% Similarity=0.205 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH---------hCC---------CCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 043158 85 FLALKNLATVFLQQGSSHYESALRCYLQAVE---------IDT---------KDSVVWNQLGTLACSMGLLSISRWAFEQ 146 (1962)
Q Consensus 85 ylAykNLG~lLl~~g~Gr~eEALe~y~rALa---------LDP---------~DaeaW~nLG~al~~LGr~eeAr~alEr 146 (1962)
-.+|+|+|.++++. |.|..+.-+|.+||+ +.| ...++.||.|..+...|+.-+|-.||.+
T Consensus 283 cif~NNlGcIh~~~--~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~ 360 (696)
T KOG2471|consen 283 CIFNNNLGCIHYQL--GCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQK 360 (696)
T ss_pred heeecCcceEeeeh--hhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHH
Confidence 35789999999999 889999999999996 122 3468899999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHH
Q 043158 147 GLLCSPNNWNCMEKLLEVLI 166 (1962)
Q Consensus 147 ALeLdPd~~~Al~nLg~aL~ 166 (1962)
|...--.+|..|.+|++++.
T Consensus 361 av~vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 361 AVHVFHRNPRLWLRLAECCI 380 (696)
T ss_pred HHHHHhcCcHHHHHHHHHHH
Confidence 99888888889998887765
No 234
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.17 E-value=0.71 Score=55.37 Aligned_cols=91 Identities=12% Similarity=0.128 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH----HHHhcCCCC------
Q 043158 85 FLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFE----QGLLCSPNN------ 154 (1962)
Q Consensus 85 ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alE----rALeLdPd~------ 154 (1962)
.....|.|.++++. |++++|+.-|..|++...-.+-+-|+++.++.+.|++..|+..-. ++++-.|..
T Consensus 144 Ad~~in~gCllyke--gqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~t 221 (459)
T KOG4340|consen 144 ADGQINLGCLLYKE--GQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTT 221 (459)
T ss_pred cchhccchheeecc--ccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCcccee
Confidence 46788999999998 899999999999999999999999999999999999999998765 555545532
Q ss_pred -------------------HHHHHHHHHHHHHcCCHHHHHHH
Q 043158 155 -------------------WNCMEKLLEVLIAIGDEVACLSV 177 (1962)
Q Consensus 155 -------------------~~Al~nLg~aL~~LGdyeeAL~~ 177 (1962)
.+|+.-.+.+.++.|++++|.+.
T Consensus 222 egiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~ea 263 (459)
T KOG4340|consen 222 EGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEA 263 (459)
T ss_pred ccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHH
Confidence 11233334667888888888764
No 235
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=93.02 E-value=0.22 Score=62.86 Aligned_cols=89 Identities=12% Similarity=0.067 Sum_probs=78.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 043158 101 SHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMG---LLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSV 177 (1962)
Q Consensus 101 Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LG---r~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~ 177 (1962)
+....|+.+|.+|++.-|....++.|.+.++++.+ +.-.|+.-...|+++||-+..||+.|+.+|..++++.+|+.+
T Consensus 388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~ 467 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSC 467 (758)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhh
Confidence 34888999999999999999999999999999875 444555556689999999999999999999999999999999
Q ss_pred HHHHHHhCCCCH
Q 043158 178 AELILRHWPSHS 189 (1962)
Q Consensus 178 ~~rALeLdPd~a 189 (1962)
...+....|.+.
T Consensus 468 ~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 468 HWALQMSFPTDV 479 (758)
T ss_pred HHHHhhcCchhh
Confidence 888888888554
No 236
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.93 E-value=0.15 Score=42.76 Aligned_cols=23 Identities=43% Similarity=0.716 Sum_probs=11.7
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHH
Q 043158 88 LKNLATVFLQQGSSHYESALRCYLQ 112 (1962)
Q Consensus 88 ykNLG~lLl~~g~Gr~eEALe~y~r 112 (1962)
|.+||.++.+. |++++|+++|++
T Consensus 2 l~~Lg~~~~~~--g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQ--GDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHC--T-HHHHHHHHHH
T ss_pred HHHHHHHHHHc--CCHHHHHHHHHH
Confidence 44555555555 455555555555
No 237
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.91 E-value=1.6 Score=55.70 Aligned_cols=143 Identities=15% Similarity=0.171 Sum_probs=73.4
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 043158 36 TYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQAVE 115 (1962)
Q Consensus 36 lYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rALa 115 (1962)
.+..|..+.+.|+.+||++.|+++++..|.. + ....+.||-.+|+.. +++.++...+.+-=+
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~-----~-----------~l~IrenLie~LLel--q~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNL-----D-----------NLNIRENLIEALLEL--QAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCcc-----c-----------hhhHHHHHHHHHHhc--CCHHHHHHHHHHhcc
Confidence 3445555666677777777777766532200 0 124566666666666 566666665555321
Q ss_pred h-CCCCHHHHHHHHHHHHH-cCC---------------hHHHHHHHHHHHhcCCCCHHHHHHHHH------HHHHcCCHH
Q 043158 116 I-DTKDSVVWNQLGTLACS-MGL---------------LSISRWAFEQGLLCSPNNWNCMEKLLE------VLIAIGDEV 172 (1962)
Q Consensus 116 L-DP~DaeaW~nLG~al~~-LGr---------------~eeAr~alErALeLdPd~~~Al~nLg~------aL~~LGdye 172 (1962)
+ -|..+...|.-+.+-.+ -|+ -..|+++..+|++.||.-|+-+..... -+...|| .
T Consensus 324 i~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~LilPPehilkrGD-S 402 (539)
T PF04184_consen 324 ISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRGD-S 402 (539)
T ss_pred ccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCCCChHHhcCCCc-H
Confidence 1 13334444443332211 111 123556677777777766665543331 1233354 6
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHH
Q 043158 173 ACLSVAELILRHWPSHSRALHVKNT 197 (1962)
Q Consensus 173 eAL~~~~rALeLdPd~a~Al~lk~~ 197 (1962)
||+.+.--.+...-+-..|+.++..
T Consensus 403 EAiaYAf~hL~hWk~veGAL~lL~~ 427 (539)
T PF04184_consen 403 EAIAYAFFHLQHWKRVEGALNLLHC 427 (539)
T ss_pred HHHHHHHHHHHHHhcCHhHHHHHHH
Confidence 6666666666665555556655533
No 238
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.75 E-value=0.59 Score=56.79 Aligned_cols=100 Identities=13% Similarity=-0.114 Sum_probs=90.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-CCCCHH---HHHHHHHHHHHcCCHHHHHH
Q 043158 101 SHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLC-SPNNWN---CMEKLLEVLIAIGDEVACLS 176 (1962)
Q Consensus 101 Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeL-dPd~~~---Al~nLg~aL~~LGdyeeAL~ 176 (1962)
|++.+|..-+.+.|+--|+|.-+|..--.++.-+|+....+.++++.+-. +|+-|- ....++-.|...|-|++|..
T Consensus 117 g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk 196 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEK 196 (491)
T ss_pred ccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHH
Confidence 88999999999999999999999999999999999999999999999988 777643 34666778899999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHhhh
Q 043158 177 VAELILRHWPSHSRALHVKNTIEE 200 (1962)
Q Consensus 177 ~~~rALeLdPd~a~Al~lk~~I~~ 200 (1962)
..++|++++|.+..|.+.++.+.+
T Consensus 197 ~A~ralqiN~~D~Wa~Ha~aHVle 220 (491)
T KOG2610|consen 197 QADRALQINRFDCWASHAKAHVLE 220 (491)
T ss_pred HHHhhccCCCcchHHHHHHHHHHH
Confidence 999999999999999888877754
No 239
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=92.75 E-value=1.5 Score=61.10 Aligned_cols=161 Identities=14% Similarity=0.137 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccc-h----hc-c--C---CCCCch-------hhhHH--hHHHHHHHH
Q 043158 33 LTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIAN-A----QA-A--D---GKSSDG-------HLLQL--RFLALKNLA 92 (1962)
Q Consensus 33 AlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~-a----~~-~--d---~~~s~s-------~lLqL--~ylAykNLG 92 (1962)
+.-|.+=-.-+++.++.++|.+..+++|..=.+.+ . .| + + .-+... ++-+- -|-.|..|.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~ 1537 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLL 1537 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 34454444446677999999999999997411111 0 01 0 0 001111 11111 245677788
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCC
Q 043158 93 TVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPN--NWNCMEKLLEVLIAIGD 170 (1962)
Q Consensus 93 ~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd--~~~Al~nLg~aL~~LGd 170 (1962)
-+|..- +.+++|.+.|++-+..--.-..+|..+|..+++..+-++|+..+.+||.+-|. |.+....-+.+-++.||
T Consensus 1538 ~iy~k~--ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1538 GIYEKS--EKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHh--hcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 888877 78999999999999998889999999999999999999999999999999998 88999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHH
Q 043158 171 EVACLSVAELILRHWPSHSRALHVK 195 (1962)
Q Consensus 171 yeeAL~~~~rALeLdPd~a~Al~lk 195 (1962)
.+.+...|+-.|.-.|.-...|...
T Consensus 1616 aeRGRtlfEgll~ayPKRtDlW~VY 1640 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVY 1640 (1710)
T ss_pred chhhHHHHHHHHhhCccchhHHHHH
Confidence 9999999999999998877666554
No 240
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.61 E-value=1.6 Score=50.12 Aligned_cols=102 Identities=25% Similarity=0.254 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 043158 34 TQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQA 113 (1962)
Q Consensus 34 lalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rA 113 (1962)
+..+..|-.....|++++|+.-++.++..+. | -.+...+-.+||.++.+. |.+++|+..+..-
T Consensus 90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~-------D--------e~lk~l~~lRLArvq~q~--~k~D~AL~~L~t~ 152 (207)
T COG2976 90 LAALELAKAEVEANNLDKAEAQLKQALAQTK-------D--------ENLKALAALRLARVQLQQ--KKADAALKTLDTI 152 (207)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccch-------h--------HHHHHHHHHHHHHHHHHh--hhHHHHHHHHhcc
Confidence 3444555556666788888877777775431 1 122456667899999999 8999999876532
Q ss_pred HHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 043158 114 VEIDTK-DSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNN 154 (1962)
Q Consensus 114 LaLDP~-DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~ 154 (1962)
.. ++ .+-.-...|.++...|+..+|+.+|++|+..+++.
T Consensus 153 ~~--~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 153 KE--ESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred cc--ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 21 11 23345568999999999999999999999998543
No 241
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=92.52 E-value=5.9 Score=49.51 Aligned_cols=56 Identities=14% Similarity=-0.010 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 043158 137 LSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSRAL 192 (1962)
Q Consensus 137 ~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~Al 192 (1962)
...|+..-.++++++|+..++-.--+.+|..-|+...+...++.+.+.+|....+.
T Consensus 245 p~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~ 300 (531)
T COG3898 245 PASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIAL 300 (531)
T ss_pred hHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHH
Confidence 44555555666667777777777777777777777777777777777777654443
No 242
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=92.47 E-value=1.9 Score=58.02 Aligned_cols=145 Identities=15% Similarity=0.102 Sum_probs=109.7
Q ss_pred HHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC
Q 043158 39 EGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQAVEIDT 118 (1962)
Q Consensus 39 kAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP 118 (1962)
--......++|..|.+...++++-.| +. ..|..--|..+.++ |+.++|..+++..-...+
T Consensus 15 pi~d~ld~~qfkkal~~~~kllkk~P-------n~-----------~~a~vLkaLsl~r~--gk~~ea~~~Le~~~~~~~ 74 (932)
T KOG2053|consen 15 PIYDLLDSSQFKKALAKLGKLLKKHP-------NA-----------LYAKVLKALSLFRL--GKGDEALKLLEALYGLKG 74 (932)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHCC-------Cc-----------HHHHHHHHHHHHHh--cCchhHHHHHhhhccCCC
Confidence 34456677899999999999997533 11 01222235566777 889999988887777788
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHH
Q 043158 119 KDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSR-ALHVKNT 197 (1962)
Q Consensus 119 ~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~-Al~lk~~ 197 (1962)
+|-...--+-.+|..+|++++|..+|++++..+|+ -+-+..+=.++.+-+.|.+-....-+.-+..|..+- -|..-..
T Consensus 75 ~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Sl 153 (932)
T KOG2053|consen 75 TDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISL 153 (932)
T ss_pred CchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHH
Confidence 89999999999999999999999999999999999 888888888999999988777766666667777653 3333444
Q ss_pred hhhcCCC
Q 043158 198 IEETEPV 204 (1962)
Q Consensus 198 I~~adP~ 204 (1962)
+.+..+.
T Consensus 154 ilqs~~~ 160 (932)
T KOG2053|consen 154 ILQSIFS 160 (932)
T ss_pred HHHhccC
Confidence 5554443
No 243
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.31 E-value=0.18 Score=42.24 Aligned_cols=28 Identities=25% Similarity=0.216 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 043158 123 VWNQLGTLACSMGLLSISRWAFEQGLLC 150 (1962)
Q Consensus 123 aW~nLG~al~~LGr~eeAr~alErALeL 150 (1962)
+|.+||.++..+|++++|+.+|+++|.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677777777777777777777775433
No 244
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.30 E-value=3.8 Score=49.22 Aligned_cols=144 Identities=8% Similarity=-0.073 Sum_probs=101.9
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRC 109 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~ 109 (1962)
.+.+..+.+.|-...++|+++-|..++.++.......... ......-.+.++... |+..+|+..
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~--------------~~~v~~e~akllw~~--g~~~~Ai~~ 206 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL--------------LPRVFLEYAKLLWAQ--GEQEEAIQK 206 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC--------------CcchHHHHHHHHHHc--CCHHHHHHH
Confidence 3445566777777888899999999999988743111000 012344456666666 777888877
Q ss_pred HHHHHHh-CC---------------------------------CCHHHHHHHHHHHHHc------CChHHHHHHHHHHHh
Q 043158 110 YLQAVEI-DT---------------------------------KDSVVWNQLGTLACSM------GLLSISRWAFEQGLL 149 (1962)
Q Consensus 110 y~rALaL-DP---------------------------------~DaeaW~nLG~al~~L------Gr~eeAr~alErALe 149 (1962)
+...+.. .. .-+.++..+|.....+ +..++++..|.+|+.
T Consensus 207 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~ 286 (352)
T PF02259_consen 207 LRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATK 286 (352)
T ss_pred HHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHH
Confidence 7777761 11 1146788888888888 999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHHhCCCCH
Q 043158 150 CSPNNWNCMEKLLEVLIAIGD-----------------EVACLSVAELILRHWPSHS 189 (1962)
Q Consensus 150 LdPd~~~Al~nLg~aL~~LGd-----------------yeeAL~~~~rALeLdPd~a 189 (1962)
++|+...+|..+|..+..+-+ ...|+.+|-+++.+.|.+.
T Consensus 287 ~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~~~ 343 (352)
T PF02259_consen 287 LDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSKYV 343 (352)
T ss_pred hChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCCch
Confidence 999999999999976654411 1347788888888887744
No 245
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.26 E-value=4.7 Score=45.90 Aligned_cols=147 Identities=16% Similarity=0.030 Sum_probs=107.4
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRC 109 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~ 109 (1962)
-+.+...|+.||.+.+.+..++|..+|..+-+.. +. .+ ..++....|.++.+. |+..+|+..
T Consensus 55 as~sgd~flaAL~lA~~~k~d~Alaaf~~lektg---------~g-~Y------pvLA~mr~at~~a~k--gdta~AV~a 116 (221)
T COG4649 55 ASKSGDAFLAALKLAQENKTDDALAAFTDLEKTG---------YG-SY------PVLARMRAATLLAQK--GDTAAAVAA 116 (221)
T ss_pred cccchHHHHHHHHHHHcCCchHHHHHHHHHHhcC---------CC-cc------hHHHHHHHHHHHhhc--ccHHHHHHH
Confidence 3456678999999999999999999999986642 11 11 135666778888988 899999999
Q ss_pred HHHHHHhCCCCHHH-----HHHHHHHHHHcCChHHHHHHHHHH-HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043158 110 YLQAVEIDTKDSVV-----WNQLGTLACSMGLLSISRWAFEQG-LLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILR 183 (1962)
Q Consensus 110 y~rALaLDP~Daea-----W~nLG~al~~LGr~eeAr~alErA-LeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALe 183 (1962)
|.++-.-.| -|.. ..+-|-++...|.|+.-..-.|.. -.-+|-...+...||.+-++.|++..|..+|.....
T Consensus 117 Fdeia~dt~-~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 117 FDEIAADTS-IPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHhccCC-CcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 998765544 3444 445556788899998765555432 234566677889999999999999999999988776
Q ss_pred hCCCCHHHHHHHH
Q 043158 184 HWPSHSRALHVKN 196 (1962)
Q Consensus 184 LdPd~a~Al~lk~ 196 (1962)
|.+-++..-.++
T Consensus 196 -Da~aprnirqRA 207 (221)
T COG4649 196 -DAQAPRNIRQRA 207 (221)
T ss_pred -cccCcHHHHHHH
Confidence 555444433333
No 246
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.09 E-value=0.69 Score=54.88 Aligned_cols=107 Identities=13% Similarity=0.134 Sum_probs=89.2
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh----cCC--CCHHHHHHHH
Q 043158 90 NLATVFLQQGSSHYESALRCYLQAVEID-TKDSVVWNQLGTLACSMGLLSISRWAFEQGLL----CSP--NNWNCMEKLL 162 (1962)
Q Consensus 90 NLG~lLl~~g~Gr~eEALe~y~rALaLD-P~DaeaW~nLG~al~~LGr~eeAr~alErALe----LdP--d~~~Al~nLg 162 (1962)
-+..++... ++|.-.++.|.+.+..+ |.++.+...||++.++.|+.+.|..+|+++-+ ++. +.-.++.|.+
T Consensus 182 ~~~~~llG~--kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 182 SMANCLLGM--KEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHhcc--hhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 345555555 78999999999999999 78999999999999999999999999995443 332 3355677888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 043158 163 EVLIAIGDEVACLSVAELILRHWPSHSRALHVKNTI 198 (1962)
Q Consensus 163 ~aL~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I 198 (1962)
.++...+++.+|...+.+++..||.++.+-..|+.+
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALc 295 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALC 295 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHH
Confidence 888888999999999999999999999877777665
No 247
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.05 E-value=2.1 Score=54.98 Aligned_cols=128 Identities=16% Similarity=0.054 Sum_probs=97.1
Q ss_pred CCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCCCCHHHH
Q 043158 47 KEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQ--GSSHYESALRCYLQAVEIDTKDSVVW 124 (1962)
Q Consensus 47 GRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~--g~Gr~eEALe~y~rALaLDP~DaeaW 124 (1962)
|+-+.+++++.++.+.+.+. ..+..+--..|++.-..+... .....+.|.+.+.+..+.-|+.+-..
T Consensus 202 gdR~~GL~~L~~~~~~~~i~-----------~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl 270 (468)
T PF10300_consen 202 GDRELGLRLLWEASKSENIR-----------SPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFL 270 (468)
T ss_pred CcHHHHHHHHHHHhccCCcc-----------hHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHH
Confidence 78888888888776643211 112222234455444444433 22678999999999999999999999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 043158 125 NQLGTLACSMGLLSISRWAFEQGLLCSPNN----WNCMEKLLEVLIAIGDEVACLSVAELILRHW 185 (1962)
Q Consensus 125 ~nLG~al~~LGr~eeAr~alErALeLdPd~----~~Al~nLg~aL~~LGdyeeAL~~~~rALeLd 185 (1962)
+..|+++...|+.++|+.+|++|+...... .-+++.++-++..+++|++|..++.+.++..
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s 335 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES 335 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Confidence 999999999999999999999999655433 4457888999999999999999999998864
No 248
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=92.05 E-value=1.4 Score=46.54 Aligned_cols=106 Identities=19% Similarity=0.140 Sum_probs=77.0
Q ss_pred HHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC
Q 043158 39 EGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQAVEIDT 118 (1962)
Q Consensus 39 kAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP 118 (1962)
+|..+.+.|++-+|+++.+.++....- +. + -...+.--|.++.++ |-..+.
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~------~~----~-----~~~lh~~QG~if~~l--------------A~~ten 52 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGE------DE----S-----SWLLHRLQGTIFYKL--------------AKKTEN 52 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccC------CC----c-----hHHHHHHHhHHHHHH--------------HHhccC
Confidence 577888899999999999998864210 00 0 013455667776665 667777
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 043158 119 KDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRH 184 (1962)
Q Consensus 119 ~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeL 184 (1962)
.|...-|.+| |+.||.++..+.|+.+..++.||.-+...-.|..|+.-++++|..
T Consensus 53 ~d~k~~yLl~-----------sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 53 PDVKFRYLLG-----------SVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred chHHHHHHHH-----------hHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 7777777666 567888888888888888888887777777788888877777764
No 249
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.69 E-value=5.2 Score=44.89 Aligned_cols=108 Identities=15% Similarity=-0.048 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 043158 86 LALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVL 165 (1962)
Q Consensus 86 lAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL 165 (1962)
.++..+..+-... ++.+++...+...-.+.|..+++-.--|.++...|++.+|+..|+.+.+..|..+-+-.-++.+|
T Consensus 11 ~gLie~~~~al~~--~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 11 GGLIEVLSVALRL--GDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHcc--CChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 4566666777777 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 043158 166 IAIGDEVACLSVAELILRHWPSHSRALHVKNT 197 (1962)
Q Consensus 166 ~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~ 197 (1962)
+.+||..= ..+...+++..|+ +.+..+-+.
T Consensus 89 ~~~~D~~W-r~~A~evle~~~d-~~a~~Lv~~ 118 (160)
T PF09613_consen 89 YALGDPSW-RRYADEVLESGAD-PDARALVRA 118 (160)
T ss_pred HHcCChHH-HHHHHHHHhcCCC-hHHHHHHHH
Confidence 99999542 2234556666554 344444333
No 250
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=91.67 E-value=0.3 Score=36.24 Aligned_cols=33 Identities=36% Similarity=0.628 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC
Q 043158 86 LALKNLATVFLQQGSSHYESALRCYLQAVEIDTKD 120 (1962)
Q Consensus 86 lAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~D 120 (1962)
.+|.++|.++... |++++|+.+|.+++.++|++
T Consensus 2 ~~~~~~a~~~~~~--~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKL--GDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHH--hhHHHHHHHHHHHHccCCCC
Confidence 4688999999999 89999999999999999864
No 251
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=91.62 E-value=0.95 Score=60.60 Aligned_cols=88 Identities=13% Similarity=0.005 Sum_probs=84.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043158 101 SHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAEL 180 (1962)
Q Consensus 101 Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~r 180 (1962)
+++..|+.-..+.++..|+-.-+--.-|.++.++|+.++|..|+|..-..-+++-..+.-+-.+|.++|++++|..+|++
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~ 102 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYER 102 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 67999999999999999999999999999999999999999999988888889999999999999999999999999999
Q ss_pred HHHhCCCC
Q 043158 181 ILRHWPSH 188 (1962)
Q Consensus 181 ALeLdPd~ 188 (1962)
|+..+|+.
T Consensus 103 ~~~~~P~e 110 (932)
T KOG2053|consen 103 ANQKYPSE 110 (932)
T ss_pred HHhhCCcH
Confidence 99999993
No 252
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.49 E-value=1 Score=55.36 Aligned_cols=154 Identities=16% Similarity=0.135 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcC-C-cccchhc-c---CCC---CCc-----------hhhhH-----HhHHH
Q 043158 33 LTQTYHEGLLKLQSKEYDKAQELLESVLKD-P-LIANAQA-A---DGK---SSD-----------GHLLQ-----LRFLA 87 (1962)
Q Consensus 33 AlalYqkAL~L~qqGRfeEA~eaY~raLa~-p-~lk~a~~-~---d~~---~s~-----------s~lLq-----L~ylA 87 (1962)
+.+..+.|+.|.++.++++|+.-..+.|.. . .+..... + +.. +.+ +.+.. ..+.+
T Consensus 6 ~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea 85 (518)
T KOG1941|consen 6 TKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEA 85 (518)
T ss_pred hHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999988862 1 1110000 0 000 001 11111 14789
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHH------
Q 043158 88 LKNLATVFLQQGSSHYESALRCYLQAVEIDTKDS-----VVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWN------ 156 (1962)
Q Consensus 88 ykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~Da-----eaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~------ 156 (1962)
|.|++..+... .++.+++.+-.-.+.+-..++ -+..-+|+++..++.++.++..||.|+...-+.-+
T Consensus 86 ~lnlar~~e~l--~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 86 YLNLARSNEKL--CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHH--HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 99999999888 789999998888888866665 56777999999999999999999999998765533
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 043158 157 CMEKLLEVLIAIGDEVACLSVAELILRHWPSH 188 (1962)
Q Consensus 157 Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~ 188 (1962)
+...||..+.++.|++.|+-+..+|+++--.+
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~ 195 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSY 195 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhc
Confidence 36889999999999999999999998875433
No 253
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=91.48 E-value=1.2 Score=56.14 Aligned_cols=106 Identities=12% Similarity=0.153 Sum_probs=97.9
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 043158 84 RFLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLE 163 (1962)
Q Consensus 84 ~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~ 163 (1962)
.-..|.-.|+.-..+ +++..|...|++||..|-.+..+|...+.+-++.....-|+..+.+|+.+=|.--..|+...-
T Consensus 72 ~~~~WikYaqwEesq--~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQ--KEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhH--HHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 346778888888888 899999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 043158 164 VLIAIGDEVACLSVAELILRHWPSHSRAL 192 (1962)
Q Consensus 164 aL~~LGdyeeAL~~~~rALeLdPd~a~Al 192 (1962)
+--.||+...|...|++++...|+. .||
T Consensus 150 mEE~LgNi~gaRqiferW~~w~P~e-qaW 177 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEWEPDE-QAW 177 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcCCCcH-HHH
Confidence 8899999999999999999999985 344
No 254
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=91.33 E-value=4.5 Score=50.52 Aligned_cols=163 Identities=14% Similarity=0.016 Sum_probs=118.9
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC-C-----cccch--hc--cCCC-CCchhhhHHhHHHHHHHHHHHHHc
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKD-P-----LIANA--QA--ADGK-SSDGHLLQLRFLALKNLATVFLQQ 98 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~-p-----~lk~a--~~--~d~~-~s~s~lLqL~ylAykNLG~lLl~~ 98 (1962)
+=....+.|.+..+.++|+++.|.++.+++|-. + .+... .. +... ......-...|.+...+.+.+.++
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~R 116 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRR 116 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhc
Confidence 446677889999999999999999999998742 1 12100 00 0000 000111223688999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhCCC-CH-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHcCCH
Q 043158 99 GSSHYESALRCYLQAVEIDTK-DS-VVWNQLGTLACSMGLLSISRWAFEQGLLCSPN-----NWNCMEKLLEVLIAIGDE 171 (1962)
Q Consensus 99 g~Gr~eEALe~y~rALaLDP~-Da-eaW~nLG~al~~LGr~eeAr~alErALeLdPd-----~~~Al~nLg~aL~~LGdy 171 (1962)
|-+..|++..+-.+.+||. || .+.+.+-....+.++++--+..++........ -|...+..+.++..+++.
T Consensus 117 --G~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~ 194 (360)
T PF04910_consen 117 --GCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKE 194 (360)
T ss_pred --CcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCc
Confidence 8999999999999999999 76 56677777788889998888888776653221 234567788888999998
Q ss_pred ---------------HHHHHHHHHHHHhCCCCHHHHHH
Q 043158 172 ---------------VACLSVAELILRHWPSHSRALHV 194 (1962)
Q Consensus 172 ---------------eeAL~~~~rALeLdPd~a~Al~l 194 (1962)
+.|...+.+|+...|.-...+.-
T Consensus 195 ~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~~Ll~ 232 (360)
T PF04910_consen 195 ESSQSSAQSGRSENSESADEALQKAILRFPWVLVPLLD 232 (360)
T ss_pred cccccccccccccchhHHHHHHHHHHHHhHHHHHHHHH
Confidence 89999999999998875544433
No 255
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=91.33 E-value=0.26 Score=39.18 Aligned_cols=31 Identities=13% Similarity=0.081 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 043158 123 VWNQLGTLACSMGLLSISRWAFEQGLLCSPN 153 (1962)
Q Consensus 123 aW~nLG~al~~LGr~eeAr~alErALeLdPd 153 (1962)
+++++|.++..+|++++|+..|++.++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4555555555555555555555555555554
No 256
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=91.29 E-value=0.37 Score=56.18 Aligned_cols=70 Identities=17% Similarity=0.070 Sum_probs=61.0
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 043158 129 TLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSRALHVKNTI 198 (1962)
Q Consensus 129 ~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I 198 (1962)
..+.+-|+.+.|.+.|.+||++.|+....|+++|..-...|+.+.|...|+.+|++||.+--+..++-..
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~gaa~kLa~ 72 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGGAALKLAV 72 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccchhhhHHh
Confidence 3455678999999999999999999999999999999999999999999999999999886544444333
No 257
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=91.27 E-value=9.3 Score=48.82 Aligned_cols=105 Identities=15% Similarity=0.168 Sum_probs=82.2
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHH--HHHHHcCC
Q 043158 93 TVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLL--EVLIAIGD 170 (1962)
Q Consensus 93 ~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg--~aL~~LGd 170 (1962)
.+-.++ ++++.....|.+-|+-+|.+--+|...|.+-..+|+.+.|+..|+-|+....-+.+-+.-.+ .--...|.
T Consensus 445 elElqL--~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E 522 (677)
T KOG1915|consen 445 ELELQL--REFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGE 522 (677)
T ss_pred HHHHHH--hhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcch
Confidence 333444 67999999999999999999999999999999999999999999999987654444333222 33356699
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHhhh
Q 043158 171 EVACLSVAELILRHWPSHSRALHVKNTIEE 200 (1962)
Q Consensus 171 yeeAL~~~~rALeLdPd~a~Al~lk~~I~~ 200 (1962)
++.|...|++.|+..+.. +.|..-+..+.
T Consensus 523 ~ekaR~LYerlL~rt~h~-kvWisFA~fe~ 551 (677)
T KOG1915|consen 523 FEKARALYERLLDRTQHV-KVWISFAKFEA 551 (677)
T ss_pred HHHHHHHHHHHHHhcccc-hHHHhHHHHhc
Confidence 999999999999997654 46755555443
No 258
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=91.27 E-value=1.5 Score=56.39 Aligned_cols=95 Identities=13% Similarity=-0.003 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-CHHHHHHH
Q 043158 87 ALKNLATVFLQQGSSHYESALRCYLQAVEIDTK----DSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPN-NWNCMEKL 161 (1962)
Q Consensus 87 AykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~----DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd-~~~Al~nL 161 (1962)
.+...|.++... |+.++|++.|.+|+..... ..-.++.+|-++..++++++|..+|.+.++.+.- ++-..+..
T Consensus 269 fl~~~gR~~~~~--g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~ 346 (468)
T PF10300_consen 269 FLFFEGRLERLK--GNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHh--cCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 344555555555 6666666666666543332 2345566666666666666666666666664432 12223555
Q ss_pred HHHHHHcCCH-------HHHHHHHHHHHH
Q 043158 162 LEVLIAIGDE-------VACLSVAELILR 183 (1962)
Q Consensus 162 g~aL~~LGdy-------eeAL~~~~rALe 183 (1962)
|.++..+|+. ++|...++++-.
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 5666666666 666666655543
No 259
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=91.14 E-value=3.3 Score=44.48 Aligned_cols=111 Identities=14% Similarity=0.147 Sum_probs=74.8
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC-cccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDP-LIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALR 108 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p-~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe 108 (1962)
+..+-..+..|-..++.|-|++|.+-|+++.... -++.-.. .++. -....+|-.|+.++..+ |+|++++.
T Consensus 6 Va~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEa------FDh~-GFDA~chA~Ls~A~~~L--gry~e~L~ 76 (144)
T PF12968_consen 6 VAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEA------FDHD-GFDAFCHAGLSGALAGL--GRYDECLQ 76 (144)
T ss_dssp HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---------HH-HHHHHHHHHHHHHHHHT--T-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhh------cccc-cHHHHHHHHHHHHHHhh--ccHHHHHH
Confidence 3345555667777888899999999999998631 1110000 0110 01245677888899988 89988877
Q ss_pred HHHHHH-------HhCCCCHHHH----HHHHHHHHHcCChHHHHHHHHHHHh
Q 043158 109 CYLQAV-------EIDTKDSVVW----NQLGTLACSMGLLSISRWAFEQGLL 149 (1962)
Q Consensus 109 ~y~rAL-------aLDP~DaeaW----~nLG~al~~LGr~eeAr~alErALe 149 (1962)
.-.+|| ++.-+.-..| ++.|.++..+|+.++|+..|+.+-+
T Consensus 77 sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 77 SADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 777776 4666666555 6789999999999999999998865
No 260
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.04 E-value=4.6 Score=47.70 Aligned_cols=102 Identities=19% Similarity=0.096 Sum_probs=74.7
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHH---
Q 043158 88 LKNLATVFLQQGSSHYESALRCYLQAVEIDTKD------SVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCM--- 158 (1962)
Q Consensus 88 ykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~D------aeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al--- 158 (1962)
+..+|.+|..-. .++++|+.+|++|-+.-..+ --.....+.....+|+|..|+..||+...-.-++...-
T Consensus 116 ~~~iaEiyEsdl-~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~ 194 (288)
T KOG1586|consen 116 HIEIAEIYESDL-QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSA 194 (288)
T ss_pred hhhHHHHHhhhH-HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHH
Confidence 446666665432 57999999999998875544 24566778888999999999999999998777775542
Q ss_pred ----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 043158 159 ----EKLLEVLIAIGDEVACLSVAELILRHWPSHSR 190 (1962)
Q Consensus 159 ----~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~ 190 (1962)
..-|.+...-+|.-.+...+++-.+++|..+.
T Consensus 195 KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 195 KDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred HHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence 33344444457777787777888888887654
No 261
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=90.57 E-value=0.59 Score=59.32 Aligned_cols=108 Identities=13% Similarity=0.022 Sum_probs=88.1
Q ss_pred CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcC-CCCHHHHH
Q 043158 29 PESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQG-SSHYESAL 107 (1962)
Q Consensus 29 ~eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g-~Gr~eEAL 107 (1962)
.++.+...++.|..-+..+....|+..|-++++.-+ + ....|-|++.+++.++ .|+.-.|+
T Consensus 370 L~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~-------~-----------~~~~l~nraa~lmkRkW~~d~~~Al 431 (758)
T KOG1310|consen 370 LPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVP-------D-----------AIYLLENRAAALMKRKWRGDSYLAL 431 (758)
T ss_pred chHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhcc-------c-----------hhHHHHhHHHHHHhhhccccHHHHH
Confidence 456677777777777777888888888988876422 1 1245678888888753 37888999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 043158 108 RCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNN 154 (1962)
Q Consensus 108 e~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~ 154 (1962)
.....|+.++|....+|+.|++++..++++.+|+.|...+....|.+
T Consensus 432 rDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 432 RDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTD 478 (758)
T ss_pred HhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchh
Confidence 99999999999999999999999999999999999999888888854
No 262
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=90.27 E-value=0.74 Score=53.69 Aligned_cols=62 Identities=21% Similarity=0.166 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 043158 106 ALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIA 167 (1962)
Q Consensus 106 ALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~ 167 (1962)
|+.+|.+|+.+.|+....|+.||.++...|+.=.|+++|-|++...--++.|..||..++..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999887779999999998887
No 263
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.00 E-value=4 Score=48.22 Aligned_cols=101 Identities=15% Similarity=0.140 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHH------HHHHHHHHHHc-CChHHHHHHHHHHHhcCCCC----
Q 043158 86 LALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVV------WNQLGTLACSM-GLLSISRWAFEQGLLCSPNN---- 154 (1962)
Q Consensus 86 lAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~Daea------W~nLG~al~~L-Gr~eeAr~alErALeLdPd~---- 154 (1962)
.+|.--+.+|.. ++..+|+.|+.+|+++-.+-... +.-+|.++..- .+++.|+.+||+|-+.--..
T Consensus 75 t~YveA~~cykk---~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~s 151 (288)
T KOG1586|consen 75 TTYVEAANCYKK---VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVS 151 (288)
T ss_pred HHHHHHHHHhhc---cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhh
Confidence 345555555543 68999999999999886654333 33677777654 89999999999998743322
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 043158 155 --WNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHS 189 (1962)
Q Consensus 155 --~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a 189 (1962)
-.++...+..-..+|+|..|+..|++...-.-++.
T Consensus 152 sANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 152 SANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 23355556666788999999999988877655553
No 264
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=89.58 E-value=1.8 Score=51.56 Aligned_cols=79 Identities=16% Similarity=0.075 Sum_probs=62.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHH
Q 043158 120 DSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNN---WNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSR---ALH 193 (1962)
Q Consensus 120 DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~---~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~---Al~ 193 (1962)
-++.||+-|.....-|++.+|...|++.....|.. ..+...++-+.+.-++|++|+..+++-+++.|+++. +.+
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 47788888888888888888888888888887765 456778888888888888888888888888888754 555
Q ss_pred HHHHh
Q 043158 194 VKNTI 198 (1962)
Q Consensus 194 lk~~I 198 (1962)
+++..
T Consensus 113 lkgLs 117 (254)
T COG4105 113 LKGLS 117 (254)
T ss_pred HHHHH
Confidence 55554
No 265
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=88.53 E-value=21 Score=42.40 Aligned_cols=112 Identities=13% Similarity=-0.008 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcC-------ChHHHHHHHHHHHhcCCCC
Q 043158 85 FLALKNLATVFLQQG--SSHYESALRCYLQAVEIDTKD-SVVWNQLGTLACSMG-------LLSISRWAFEQGLLCSPNN 154 (1962)
Q Consensus 85 ylAykNLG~lLl~~g--~Gr~eEALe~y~rALaLDP~D-aeaW~nLG~al~~LG-------r~eeAr~alErALeLdPd~ 154 (1962)
..+.++||.++..-. ..+..+|...|.+|....-.. ..+.+++|..+..-+ +...|+..|++|-... +
T Consensus 109 ~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~ 186 (292)
T COG0790 109 AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--N 186 (292)
T ss_pred HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--C
Confidence 467888999998721 138999999999999996655 466888998887742 3347999999988876 8
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhh
Q 043158 155 WNCMEKLLEVLIA----IGDEVACLSVAELILRHWPSHSRALHVKNTIEE 200 (1962)
Q Consensus 155 ~~Al~nLg~aL~~----LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I~~ 200 (1962)
+.+..+||.++.. -.++.+|..+|.+|.+... ..+.+....+..
T Consensus 187 ~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~~~~~ 234 (292)
T COG0790 187 PDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLGLMYL 234 (292)
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHHHHHh
Confidence 9999999976643 3489999999999999876 677777775544
No 266
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=88.48 E-value=3.1 Score=50.98 Aligned_cols=88 Identities=15% Similarity=0.026 Sum_probs=67.9
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCC------------hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 043158 108 RCYLQAVEIDTKDSVVWNQLGTLACSMGL------------LSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACL 175 (1962)
Q Consensus 108 e~y~rALaLDP~DaeaW~nLG~al~~LGr------------~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL 175 (1962)
.-|.+.+.-+|.|.++|..+....-.+-. .+..+..|++||+.+|++...+..+-.....+.+-++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45677888888888888888876665544 456677888888888888888877777777888888888
Q ss_pred HHHHHHHHhCCCCHHHHHHH
Q 043158 176 SVAELILRHWPSHSRALHVK 195 (1962)
Q Consensus 176 ~~~~rALeLdPd~a~Al~lk 195 (1962)
.-+++++..+|++...|...
T Consensus 86 ~~we~~l~~~~~~~~LW~~y 105 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREY 105 (321)
T ss_pred HHHHHHHHHCCCChHHHHHH
Confidence 88888888888877666443
No 267
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=88.31 E-value=1.1 Score=45.48 Aligned_cols=49 Identities=22% Similarity=0.245 Sum_probs=43.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 043158 140 SRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSH 188 (1962)
Q Consensus 140 Ar~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~ 188 (1962)
.+..++++++-+|+++.+.+.++.++...|++++|+..+-.+++.+|++
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 4678999999999999999999999999999999999999999999887
No 268
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=88.23 E-value=11 Score=47.36 Aligned_cols=53 Identities=15% Similarity=-0.010 Sum_probs=43.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 043158 101 SHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPN 153 (1962)
Q Consensus 101 Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd 153 (1962)
.+...|.+.-.+|+.+.|+.+-+-.--+.++.+.|+.+.+-..+|.+-+..|.
T Consensus 243 adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH 295 (531)
T COG3898 243 ADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH 295 (531)
T ss_pred CChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC
Confidence 36788888888888888888888888888888888888888888888776653
No 269
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=88.12 E-value=0.78 Score=36.44 Aligned_cols=33 Identities=12% Similarity=0.371 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 043158 156 NCMEKLLEVLIAIGDEVACLSVAELILRHWPSH 188 (1962)
Q Consensus 156 ~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~ 188 (1962)
+|++++|.++..+|++++|+..++++++..|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 478999999999999999999999999999974
No 270
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=88.03 E-value=3.9 Score=44.85 Aligned_cols=95 Identities=17% Similarity=0.130 Sum_probs=75.6
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHh-cCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043158 106 ALRCYLQAVEIDTKDSVVWNQLGTLACSMGL---LSISRWAFEQGLL-CSPN-NWNCMEKLLEVLIAIGDEVACLSVAEL 180 (1962)
Q Consensus 106 ALe~y~rALaLDP~DaeaW~nLG~al~~LGr---~eeAr~alErALe-LdPd-~~~Al~nLg~aL~~LGdyeeAL~~~~r 180 (1962)
+-+-+.+.-+.+.-.....++++-++....+ .++.+.+|+..+. -+|. ..++++-|+...+++++|+.++.+.+.
T Consensus 17 ~~e~~~rq~a~~~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ 96 (149)
T KOG3364|consen 17 GQEEILRQAARSDVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDA 96 (149)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHH
Confidence 3344444444444456778888888877655 5677889999996 4453 478899999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHhhh
Q 043158 181 ILRHWPSHSRALHVKNTIEE 200 (1962)
Q Consensus 181 ALeLdPd~a~Al~lk~~I~~ 200 (1962)
.|+.+|++..|..++..|+.
T Consensus 97 ll~~e~~n~Qa~~Lk~~ied 116 (149)
T KOG3364|consen 97 LLETEPNNRQALELKETIED 116 (149)
T ss_pred HHhhCCCcHHHHHHHHHHHH
Confidence 99999999999999988865
No 271
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.98 E-value=0.86 Score=37.85 Aligned_cols=27 Identities=19% Similarity=0.097 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHh
Q 043158 123 VWNQLGTLACSMGLLSISRWAFEQGLL 149 (1962)
Q Consensus 123 aW~nLG~al~~LGr~eeAr~alErALe 149 (1962)
++.+||.++..+|++++|+.+++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 344444444444444444444444443
No 272
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.72 E-value=5.5 Score=48.95 Aligned_cols=119 Identities=12% Similarity=-0.018 Sum_probs=59.0
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHh--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 043158 38 HEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLR--FLALKNLATVFLQQGSSHYESALRCYLQAVE 115 (1962)
Q Consensus 38 qkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~--ylAykNLG~lLl~~g~Gr~eEALe~y~rALa 115 (1962)
.++..+...|++.+|....+++|+..|- | +++.+ ..+|.+. |+.+.-...+++.+-
T Consensus 108 ~~aai~~~~g~~h~a~~~wdklL~d~Pt------D-------lla~kfsh~a~fy~---------G~~~~~k~ai~kIip 165 (491)
T KOG2610|consen 108 AKAAILWGRGKHHEAAIEWDKLLDDYPT------D-------LLAVKFSHDAHFYN---------GNQIGKKNAIEKIIP 165 (491)
T ss_pred hhHHHhhccccccHHHHHHHHHHHhCch------h-------hhhhhhhhhHHHhc---------cchhhhhhHHHHhcc
Confidence 3455566778899999999999875330 1 11111 1122221 233333344444444
Q ss_pred h-CCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 043158 116 I-DTKD---SVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVA 178 (1962)
Q Consensus 116 L-DP~D---aeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~ 178 (1962)
. +|+- .-+.-.++-.+...|-|++|...-++|+++||.+.-+...++-|+..-|++.++.++.
T Consensus 166 ~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM 232 (491)
T KOG2610|consen 166 KWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFM 232 (491)
T ss_pred ccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHH
Confidence 3 3333 2233333444455555555555555555555555555555555555555555555543
No 273
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=87.49 E-value=1.6 Score=40.40 Aligned_cols=39 Identities=15% Similarity=0.055 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHH
Q 043158 122 VVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEK 160 (1962)
Q Consensus 122 eaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~n 160 (1962)
+..|.+|..+.++|+|..|+.+.+.+|+.+|++..+..-
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L 40 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 467889999999999999999999999999999887543
No 274
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.31 E-value=3 Score=49.45 Aligned_cols=139 Identities=15% Similarity=0.185 Sum_probs=87.2
Q ss_pred ccHHHHHHHHHHHHHC-CCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHH
Q 043158 31 SHLTQTYHEGLLKLQS-KEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRC 109 (1962)
Q Consensus 31 eeAlalYqkAL~L~qq-GRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~ 109 (1962)
-+|.+.|.+|..+.+. ..+.|+..+|+++...- .+. |+.+++ ..++---|.++.. .+.++|+..
T Consensus 68 fhAAKayEqaamLake~~klsEvvdl~eKAs~lY----~E~----GspdtA----AmaleKAak~len---v~Pd~Alql 132 (308)
T KOG1585|consen 68 FHAAKAYEQAAMLAKELSKLSEVVDLYEKASELY----VEC----GSPDTA----AMALEKAAKALEN---VKPDDALQL 132 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----HHh----CCcchH----HHHHHHHHHHhhc---CCHHHHHHH
Confidence 3555666655555444 77888888888876531 111 111222 2233334444433 579999999
Q ss_pred HHHHHHhCCC---C---HHHHHHHHHHHHHcCChHHHHHHHHHHH----hcCCCCHHHHHHHHHHH--HHcCCHHHHHHH
Q 043158 110 YLQAVEIDTK---D---SVVWNQLGTLACSMGLLSISRWAFEQGL----LCSPNNWNCMEKLLEVL--IAIGDEVACLSV 177 (1962)
Q Consensus 110 y~rALaLDP~---D---aeaW~nLG~al~~LGr~eeAr~alErAL----eLdPd~~~Al~nLg~aL--~~LGdyeeAL~~ 177 (1962)
|++|+++--. + .+.+...|+++.++.++.+|-.++.+-. +++.-...+-.-++.++ .-..||..|..+
T Consensus 133 Yqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc 212 (308)
T KOG1585|consen 133 YQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKC 212 (308)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999876333 2 4677788899999999999999887643 34433334334444444 444699999998
Q ss_pred HHHHHHh
Q 043158 178 AELILRH 184 (1962)
Q Consensus 178 ~~rALeL 184 (1962)
++..-.+
T Consensus 213 ~r~~~qi 219 (308)
T KOG1585|consen 213 YRDCSQI 219 (308)
T ss_pred hcchhcC
Confidence 8775544
No 275
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=87.22 E-value=3.8 Score=53.27 Aligned_cols=108 Identities=15% Similarity=0.110 Sum_probs=90.4
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH-HHhcCCCCHHHHHHH------HH
Q 043158 91 LATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQ-GLLCSPNNWNCMEKL------LE 163 (1962)
Q Consensus 91 LG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alEr-ALeLdPd~~~Al~nL------g~ 163 (1962)
+...+... ++...|.-.++.++..+|+.+.+..+||.++...|..-.|...+.. +....|++...+.-+ +.
T Consensus 73 lsi~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 150 (620)
T COG3914 73 LSILLAPL--ADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGR 150 (620)
T ss_pred HHhhcccc--ccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHH
Confidence 55555556 7788899999999999999999999999999999988888887766 999999998887666 88
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhh
Q 043158 164 VLIAIGDEVACLSVAELILRHWPSHSRALHVKNTIEE 200 (1962)
Q Consensus 164 aL~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I~~ 200 (1962)
.+..+|+..++.....++.++.|.++....-....++
T Consensus 151 ~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~ 187 (620)
T COG3914 151 YLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQ 187 (620)
T ss_pred HHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHH
Confidence 9999999999999999999999999755444333343
No 276
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=87.13 E-value=1.2 Score=56.25 Aligned_cols=107 Identities=13% Similarity=0.156 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHH-HHhCCC--------CHHHHHHHHHHHHHcCChHHHHHHHHHHHh--------
Q 043158 87 ALKNLATVFLQQGSSHYESALRCYLQA-VEIDTK--------DSVVWNQLGTLACSMGLLSISRWAFEQGLL-------- 149 (1962)
Q Consensus 87 AykNLG~lLl~~g~Gr~eEALe~y~rA-LaLDP~--------DaeaW~nLG~al~~LGr~eeAr~alErALe-------- 149 (1962)
+..--+++.+.+ |++.+|+..+... +.-.|. .--+|+|||.++.++|.|..+...|.+||+
T Consensus 242 ~l~LKsq~eY~~--gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~ 319 (696)
T KOG2471|consen 242 ALLLKSQLEYAH--GNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRN 319 (696)
T ss_pred HHHHHHHHHHHh--cchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhc
Confidence 333445556666 7888888876643 233333 235799999999999999999999999996
Q ss_pred -cCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 043158 150 -CSP---------NNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSRALHVK 195 (1962)
Q Consensus 150 -LdP---------d~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~Al~lk 195 (1962)
+.| ..-+.++|.|..+...|+.-.|.+||.+|....-.+|..|..+
T Consensus 320 g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRl 375 (696)
T KOG2471|consen 320 GLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRL 375 (696)
T ss_pred cCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 112 2245689999999999999999999999999887778777554
No 277
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.05 E-value=8.4 Score=45.94 Aligned_cols=137 Identities=13% Similarity=0.062 Sum_probs=84.5
Q ss_pred cccHHHHHHHH-HHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHH
Q 043158 30 ESHLTQTYHEG-LLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALR 108 (1962)
Q Consensus 30 eeeAlalYqkA-L~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe 108 (1962)
++-|...|.+| ..+....+|++|..++.++.+-.. .+..... -.-+|-..|+++.+. ..+.||..
T Consensus 27 ~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yE-------nnrslfh-----AAKayEqaamLake~--~klsEvvd 92 (308)
T KOG1585|consen 27 WDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYE-------NNRSLFH-----AAKAYEQAAMLAKEL--SKLSEVVD 92 (308)
T ss_pred chhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH-------hcccHHH-----HHHHHHHHHHHHHHH--HHhHHHHH
Confidence 33444455544 445555889999888888874211 0000001 124555667777776 67888888
Q ss_pred HHHHHHHhC-----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHH
Q 043158 109 CYLQAVEID-----TKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNN------WNCMEKLLEVLIAIGDEVACLSV 177 (1962)
Q Consensus 109 ~y~rALaLD-----P~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~------~~Al~nLg~aL~~LGdyeeAL~~ 177 (1962)
.|++|..+. |+-+..-...+.=...-.+.++|+..|.+++.+=.+. .+.+...+.+|.++.++.+|...
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a 172 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATA 172 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHH
Confidence 888887653 3333322223333345567888999999888754332 34467777889999999998877
Q ss_pred HHH
Q 043158 178 AEL 180 (1962)
Q Consensus 178 ~~r 180 (1962)
+.+
T Consensus 173 ~lK 175 (308)
T KOG1585|consen 173 FLK 175 (308)
T ss_pred HHH
Confidence 644
No 278
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=84.73 E-value=8.7 Score=43.46 Aligned_cols=92 Identities=20% Similarity=0.147 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--CCHHHHHH
Q 043158 86 LALKNLATVFLQQGSSHYESALRCYLQAVEIDTKD---SVVWNQLGTLACSMGLLSISRWAFEQGLLCSP--NNWNCMEK 160 (1962)
Q Consensus 86 lAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~D---aeaW~nLG~al~~LGr~eeAr~alErALeLdP--d~~~Al~n 160 (1962)
.+|..+|..|.+. |++++|+++|.++.+.-.+. .+++.++-++...+|++........+|-.+-. .+|.....
T Consensus 37 ~~~~~l~~~~~~~--Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr 114 (177)
T PF10602_consen 37 MALEDLADHYCKI--GDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR 114 (177)
T ss_pred HHHHHHHHHHHHh--hhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 6889999999999 99999999999988875443 68999999999999999999999998877653 44555544
Q ss_pred HH----HHHHHcCCHHHHHHHHH
Q 043158 161 LL----EVLIAIGDEVACLSVAE 179 (1962)
Q Consensus 161 Lg----~aL~~LGdyeeAL~~~~ 179 (1962)
|. ..+...|+|..|...|-
T Consensus 115 lk~~~gL~~l~~r~f~~AA~~fl 137 (177)
T PF10602_consen 115 LKVYEGLANLAQRDFKEAAELFL 137 (177)
T ss_pred HHHHHHHHHHHhchHHHHHHHHH
Confidence 33 34455688888887554
No 279
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=84.67 E-value=12 Score=45.19 Aligned_cols=111 Identities=15% Similarity=0.078 Sum_probs=96.6
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH-HHHHHHHHHHhcCCCCHHHHHHHH
Q 043158 84 RFLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLS-ISRWAFEQGLLCSPNNWNCMEKLL 162 (1962)
Q Consensus 84 ~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~e-eAr~alErALeLdPd~~~Al~nLg 162 (1962)
+|-.|.-+-.++..++ .++.+-++.+.+.++-.|.+..+|...-.+...+|+.. .-+...+.+|..|..+-.||.-.-
T Consensus 76 nYTVW~yRr~iL~~l~-~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRq 154 (318)
T KOG0530|consen 76 NYTVWQYRRVILRHLM-SDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQ 154 (318)
T ss_pred cchHHHHHHHHHHHhH-HHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHH
Confidence 5777777777777764 57888999999999999999999999999999999988 888899999999999999999888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 043158 163 EVLIAIGDEVACLSVAELILRHWPSHSRALHVK 195 (1962)
Q Consensus 163 ~aL~~LGdyeeAL~~~~rALeLdPd~a~Al~lk 195 (1962)
=++...++++.=+.+....|+.|-.+-.||..+
T Consensus 155 W~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~R 187 (318)
T KOG0530|consen 155 WVLRFFKDYEDELAYADELLEEDIRNNSAWNQR 187 (318)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhhhccchhhee
Confidence 899999999999999999999887766677444
No 280
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=84.61 E-value=1.7 Score=36.04 Aligned_cols=29 Identities=45% Similarity=0.574 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 043158 86 LALKNLATVFLQQGSSHYESALRCYLQAVEI 116 (1962)
Q Consensus 86 lAykNLG~lLl~~g~Gr~eEALe~y~rALaL 116 (1962)
.++.|+|.++... |++++|+.++++|+++
T Consensus 3 ~~~~~la~~~~~~--g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQ--GRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHC--T-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh--hhcchhhHHHHHHHHH
Confidence 5789999999999 9999999999999876
No 281
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=84.14 E-value=5.7 Score=48.34 Aligned_cols=103 Identities=12% Similarity=0.029 Sum_probs=68.5
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH-HhcCCCCHHHHHHHHHHHHHcCCH
Q 043158 93 TVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQG-LLCSPNNWNCMEKLLEVLIAIGDE 171 (1962)
Q Consensus 93 ~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErA-LeLdPd~~~Al~nLg~aL~~LGdy 171 (1962)
.-+... |++.+|...|..|++.+|...++-..++.++...|+.+.|...|... .+..-+.+..+......+.+....
T Consensus 142 ~~~~~~--e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEA--EDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhc--cchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 344555 89999999999999999999999999999999999999988777652 222222222222222333333332
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 043158 172 VACLSVAELILRHWPSHSRALHVKNTI 198 (1962)
Q Consensus 172 eeAL~~~~rALeLdPd~a~Al~lk~~I 198 (1962)
.+.. .+.+.+..||++..+.+-++..
T Consensus 220 ~~~~-~l~~~~aadPdd~~aa~~lA~~ 245 (304)
T COG3118 220 PEIQ-DLQRRLAADPDDVEAALALADQ 245 (304)
T ss_pred CCHH-HHHHHHHhCCCCHHHHHHHHHH
Confidence 2222 2345667889888777666554
No 282
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=83.94 E-value=1.4 Score=54.25 Aligned_cols=132 Identities=16% Similarity=0.075 Sum_probs=92.3
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHhcC-CcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 043158 38 HEGLLKLQSKEYDKAQELLESVLKD-PLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQAVEI 116 (1962)
Q Consensus 38 qkAL~L~qqGRfeEA~eaY~raLa~-p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaL 116 (1962)
+.+....+.+++++|..-|++++.. ..+..........-...+..+++..+.|++.+.+.. +.+..|+..-..|++.
T Consensus 227 ~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~--~~~~~a~~~~~~~~~~ 304 (372)
T KOG0546|consen 227 NIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKV--KGRGGARFRTNEALRD 304 (372)
T ss_pred ccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccc--cCCCcceecccccccc
Confidence 3455677889999999999999863 211100000000001223444677788888887777 6777787777778888
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 043158 117 DTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDE 171 (1962)
Q Consensus 117 DP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdy 171 (1962)
++....+++..|..++.+.++++|+..++.|...+|++......+..+-....++
T Consensus 305 ~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~ 359 (372)
T KOG0546|consen 305 ERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQY 359 (372)
T ss_pred ChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHH
Confidence 8888888888898888888999999888888888888887776666555544443
No 283
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=83.74 E-value=12 Score=44.91 Aligned_cols=111 Identities=14% Similarity=0.081 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--------
Q 043158 86 LALKNLATVFLQQGSSHYESALRCYLQAVEIDT----KDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPN-------- 153 (1962)
Q Consensus 86 lAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP----~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd-------- 153 (1962)
..|...+.+.... |+++.|..++.++...++ ..+.+.+..+.++...|+..+|+..++..+.....
T Consensus 147 ~~~l~~a~~aRk~--g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 147 ETWLKFAKLARKA--GNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHC--CCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 4677788888888 899999999999998763 25788899999999999999999999998882111
Q ss_pred --------------------------CHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 043158 154 --------------------------NWNCMEKLLEVLIAI------GDEVACLSVAELILRHWPSHSRALHVKNTI 198 (1962)
Q Consensus 154 --------------------------~~~Al~nLg~aL~~L------GdyeeAL~~~~rALeLdPd~a~Al~lk~~I 198 (1962)
.+.++..+|.-...+ +..++++..|+.|++++|+..++++..+..
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 225 AELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 033456666666666 888999999999999999999998887665
No 284
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=83.71 E-value=7.9 Score=50.60 Aligned_cols=82 Identities=17% Similarity=0.090 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHH-HHHHhCCCCHHHHHHH------HHHHHHcCChHHHHHHHHHHHhcCCCCHHH
Q 043158 85 FLALKNLATVFLQQGSSHYESALRCYL-QAVEIDTKDSVVWNQL------GTLACSMGLLSISRWAFEQGLLCSPNNWNC 157 (1962)
Q Consensus 85 ylAykNLG~lLl~~g~Gr~eEALe~y~-rALaLDP~DaeaW~nL------G~al~~LGr~eeAr~alErALeLdPd~~~A 157 (1962)
..++.|||.++... |....|+..+. .|+...|++......+ |+.+..+|+..++..+.+++..+.|.++..
T Consensus 101 ~~~~~~L~~ale~~--~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~ 178 (620)
T COG3914 101 CPAVQNLAAALELD--GLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRV 178 (620)
T ss_pred chHHHHHHHHHHHh--hhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhh
Confidence 47889999999887 55555555554 5999999999998888 999999999999999999999999999888
Q ss_pred HHHHHHHHHHc
Q 043158 158 MEKLLEVLIAI 168 (1962)
Q Consensus 158 l~nLg~aL~~L 168 (1962)
...+.....+.
T Consensus 179 ~~~~~~~r~~~ 189 (620)
T COG3914 179 LGALMTARQEQ 189 (620)
T ss_pred HhHHHHHHHHh
Confidence 77776664443
No 285
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=83.63 E-value=7.8 Score=45.21 Aligned_cols=107 Identities=14% Similarity=0.113 Sum_probs=67.1
Q ss_pred HHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHH
Q 043158 43 KLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSH-------YESALRCYLQAVE 115 (1962)
Q Consensus 43 L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr-------~eEALe~y~rALa 115 (1962)
+.....+++|++.|.-+|-...+....+ . ..+..+..+|=++... |+ +..|++.|.+|++
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~-------s----~~A~l~LrlAWlyR~~--~~~~~E~~fl~~Al~~y~~a~~ 153 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCAQIKKEKP-------S----KKAGLCLRLAWLYRDL--GDEENEKRFLRKALEFYEEAYE 153 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCH-------H----HHHHHHHHHHHHhhcc--CCHHHHHHHHHHHHHHHHHHHH
Confidence 4445678999999988775321110000 0 1223444555555555 44 6778888888887
Q ss_pred hCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH-HHHHHHH
Q 043158 116 IDTK------DSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNW-NCMEKLL 162 (1962)
Q Consensus 116 LDP~------DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~-~Al~nLg 162 (1962)
.... ...+.|.+|.+.+++|++++|+..|.+++...-... +.+.+++
T Consensus 154 ~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~A 207 (214)
T PF09986_consen 154 NEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMA 207 (214)
T ss_pred hCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHH
Confidence 7643 257888888888888888888888888887554333 3444444
No 286
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.88 E-value=20 Score=40.03 Aligned_cols=105 Identities=13% Similarity=-0.055 Sum_probs=81.3
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 043158 91 LATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGD 170 (1962)
Q Consensus 91 LG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGd 170 (1962)
...+-+.. ++++++...+...--+.|+.+++-.--|.+++..|++.+|+..|+...+-.|..+-+..-++.+|+.+||
T Consensus 16 ~~~~aL~~--~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 16 VLMYALRS--ADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred HHHHHHhc--CCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 33333345 7899999999988999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHhh
Q 043158 171 EVACLSVAELILRHWPSHSRALHVKNTIE 199 (1962)
Q Consensus 171 yeeAL~~~~rALeLdPd~a~Al~lk~~I~ 199 (1962)
..==. +...+++.+++ +.+..+-+.+.
T Consensus 94 p~Wr~-~A~~~le~~~~-~~a~~Lv~al~ 120 (153)
T TIGR02561 94 AEWHV-HADEVLARDAD-ADAVALVRALL 120 (153)
T ss_pred hHHHH-HHHHHHHhCCC-HhHHHHHHHHh
Confidence 54322 23445555333 34444444443
No 287
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=82.70 E-value=80 Score=37.56 Aligned_cols=96 Identities=15% Similarity=0.051 Sum_probs=72.4
Q ss_pred HHHHHHHHHHc----C-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCHHHH
Q 043158 88 LKNLATVFLQQ----G-SSHYESALRCYLQAVEIDTKDSVVWNQLGTLACS----MGLLSISRWAFEQGLLCSPNNWNCM 158 (1962)
Q Consensus 88 ykNLG~lLl~~----g-~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~----LGr~eeAr~alErALeLdPd~~~Al 158 (1962)
..++|.++..- + .-+...|+..|.+|.... ++.+.+++|.++.. -.++++|...|.+|-+... ..+.
T Consensus 151 ~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~ 226 (292)
T COG0790 151 MYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAAC 226 (292)
T ss_pred HHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHH
Confidence 66666666552 1 013448999999999988 89999999988755 3488999999999999887 8899
Q ss_pred HHHHHHHHHcC---------------CHHHHHHHHHHHHHhCCCC
Q 043158 159 EKLLEVLIAIG---------------DEVACLSVAELILRHWPSH 188 (1962)
Q Consensus 159 ~nLg~aL~~LG---------------dyeeAL~~~~rALeLdPd~ 188 (1962)
++++ +++.-| +...|...+.++....+..
T Consensus 227 ~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 227 YNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred HHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChh
Confidence 9999 777666 6666777776666655443
No 288
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.43 E-value=26 Score=46.23 Aligned_cols=134 Identities=14% Similarity=0.050 Sum_probs=97.4
Q ss_pred CCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcC--CC-CHHHHHHHHHHHHHhCCCCHHH
Q 043158 47 KEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQG--SS-HYESALRCYLQAVEIDTKDSVV 123 (1962)
Q Consensus 47 GRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g--~G-r~eEALe~y~rALaLDP~Daea 123 (1962)
.+++.|...|+.+... ++. .+.+....+.+.+|.+|.+.. .. +.+.|+..|.+|.+.+ ++++
T Consensus 263 ~d~e~a~~~l~~aa~~--~~~-----------~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a 327 (552)
T KOG1550|consen 263 QDLESAIEYLKLAAES--FKK-----------AATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDA 327 (552)
T ss_pred ccHHHHHHHHHHHHHH--HHH-----------HHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchH
Confidence 4777787777777652 000 000112346778899988842 13 6788999999999885 5778
Q ss_pred HHHHHHHHHHcC---ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 043158 124 WNQLGTLACSMG---LLSISRWAFEQGLLCSPNNWNCMEKLLEVLIA----IGDEVACLSVAELILRHWPSHSRALHVKN 196 (1962)
Q Consensus 124 W~nLG~al~~LG---r~eeAr~alErALeLdPd~~~Al~nLg~aL~~----LGdyeeAL~~~~rALeLdPd~a~Al~lk~ 196 (1962)
.+.+|.++..-. +++.|..+|..|... .|.+|..+++.++.. .-+...|..++.+|.++. ++.|...+.
T Consensus 328 ~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~ 403 (552)
T KOG1550|consen 328 QYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLG 403 (552)
T ss_pred HHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHH
Confidence 899999988866 568999999988866 789999999977753 257899999999999987 556566665
Q ss_pred Hhh
Q 043158 197 TIE 199 (1962)
Q Consensus 197 ~I~ 199 (1962)
.+.
T Consensus 404 ~~~ 406 (552)
T KOG1550|consen 404 AFY 406 (552)
T ss_pred HHH
Confidence 553
No 289
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=80.37 E-value=6.6 Score=47.29 Aligned_cols=78 Identities=12% Similarity=0.034 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhh
Q 043158 122 VVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSRALHVKNTIE 199 (1962)
Q Consensus 122 eaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I~ 199 (1962)
....++=.++...++++.|..+-++.+.++|+++.-+...|.+|.++|.+..|+.-+...++.-|+++.+..++..+.
T Consensus 182 rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~ 259 (269)
T COG2912 182 RLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLL 259 (269)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 445566678888899999999999999999999999999999999999999999999999999999988888877663
No 290
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=79.68 E-value=26 Score=46.54 Aligned_cols=95 Identities=15% Similarity=0.185 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCCHHHHHHHHHHH---HHcCCHHHHH
Q 043158 101 SHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCS--PNNWNCMEKLLEVL---IAIGDEVACL 175 (1962)
Q Consensus 101 Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLd--Pd~~~Al~nLg~aL---~~LGdyeeAL 175 (1962)
|-++.-...|.+.+++.=.-|..-.|.|..+....-+++|-.+||+++.+- |+--+.|...-+.. +.--..+.|.
T Consensus 491 gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraR 570 (835)
T KOG2047|consen 491 GTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERAR 570 (835)
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 445555555666666666666666666666666666666666666666554 33333443332222 1223355666
Q ss_pred HHHHHHHHhCC-CCHHHHHHH
Q 043158 176 SVAELILRHWP-SHSRALHVK 195 (1962)
Q Consensus 176 ~~~~rALeLdP-d~a~Al~lk 195 (1962)
..|++||+.-| .+++..+++
T Consensus 571 dLFEqaL~~Cpp~~aKtiyLl 591 (835)
T KOG2047|consen 571 DLFEQALDGCPPEHAKTIYLL 591 (835)
T ss_pred HHHHHHHhcCCHHHHHHHHHH
Confidence 66666666543 334444443
No 291
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=79.24 E-value=3.1 Score=50.58 Aligned_cols=90 Identities=13% Similarity=0.032 Sum_probs=79.8
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 043158 109 CYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEK-LLEVLIAIGDEVACLSVAELILRHWPS 187 (1962)
Q Consensus 109 ~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~n-Lg~aL~~LGdyeeAL~~~~rALeLdPd 187 (1962)
.|.|+...-|+|+..|...+.-..+.|.+.+--..|-+++..+|.+++.|.- -+-=+...++.+.|.+.+.++|+.+|+
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 5678888899999999999999999999999999999999999999999965 445677789999999999999999999
Q ss_pred CHHHHHHHHHh
Q 043158 188 HSRALHVKNTI 198 (1962)
Q Consensus 188 ~a~Al~lk~~I 198 (1962)
.|..|.--...
T Consensus 175 ~p~iw~eyfr~ 185 (435)
T COG5191 175 SPRIWIEYFRM 185 (435)
T ss_pred CchHHHHHHHH
Confidence 99887655443
No 292
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=76.94 E-value=16 Score=42.80 Aligned_cols=83 Identities=13% Similarity=0.019 Sum_probs=62.6
Q ss_pred CHHHHHHHHHHHHHh----CCCC---HHHHHHHHHHHHHcCCh-------HHHHHHHHHHHhcCCC------CHHHHHHH
Q 043158 102 HYESALRCYLQAVEI----DTKD---SVVWNQLGTLACSMGLL-------SISRWAFEQGLLCSPN------NWNCMEKL 161 (1962)
Q Consensus 102 r~eEALe~y~rALaL----DP~D---aeaW~nLG~al~~LGr~-------eeAr~alErALeLdPd------~~~Al~nL 161 (1962)
.+++|++.|.-|+-. .+.+ +.++.++|-+++.+|+. ..|+..|++|++.... ....++-+
T Consensus 92 t~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLi 171 (214)
T PF09986_consen 92 TLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLI 171 (214)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHH
Confidence 477888877766542 2222 67899999999999994 4566666666655432 25668899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Q 043158 162 LEVLIAIGDEVACLSVAELILRH 184 (1962)
Q Consensus 162 g~aL~~LGdyeeAL~~~~rALeL 184 (1962)
|.+.+++|++++|..+|.+++..
T Consensus 172 geL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 172 GELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHhCCHHHHHHHHHHHHcC
Confidence 99999999999999999999876
No 293
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.46 E-value=33 Score=44.30 Aligned_cols=132 Identities=12% Similarity=0.006 Sum_probs=99.1
Q ss_pred cccHHHHHHHHHHHHHCC--CHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSK--EYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESAL 107 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqG--RfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEAL 107 (1962)
.+-+.+++..|-.+...| +...++.+.+.++...+.. ...+..+..+|.+++..- .+.+.|.
T Consensus 4 dAva~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~---------------~veart~LqLg~lL~~yT-~N~elAk 67 (629)
T KOG2300|consen 4 DAVAEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISF---------------LVEARTHLQLGALLLRYT-KNVELAK 67 (629)
T ss_pred hHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChH---------------HHHHHHHHHHHHHHHHHh-ccHHHHH
Confidence 344566677777777778 8999999999999864311 024567788999998874 7899999
Q ss_pred HHHHHHHHhCC---CC----HHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCCCCHHH----HHHHHHHHHHcCCHHHHH
Q 043158 108 RCYLQAVEIDT---KD----SVVWNQLGTLACSMG-LLSISRWAFEQGLLCSPNNWNC----MEKLLEVLIAIGDEVACL 175 (1962)
Q Consensus 108 e~y~rALaLDP---~D----aeaW~nLG~al~~LG-r~eeAr~alErALeLdPd~~~A----l~nLg~aL~~LGdyeeAL 175 (1962)
.++++|..+.. +. -++.-.|+.++.... .+..|+..+++|+++.-+.|-- +++|+++..--.|+..|+
T Consensus 68 sHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~ 147 (629)
T KOG2300|consen 68 SHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSAL 147 (629)
T ss_pred HHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHH
Confidence 99999988753 33 345667888888888 8999999999999998776533 356666666667777777
Q ss_pred HH
Q 043158 176 SV 177 (1962)
Q Consensus 176 ~~ 177 (1962)
+.
T Consensus 148 el 149 (629)
T KOG2300|consen 148 EL 149 (629)
T ss_pred HH
Confidence 64
No 294
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=75.79 E-value=9.5 Score=48.14 Aligned_cols=54 Identities=11% Similarity=0.051 Sum_probs=39.8
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 043158 90 NLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFE 145 (1962)
Q Consensus 90 NLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alE 145 (1962)
-|..+|+.+ ++.+-|+.+-.|.+.++|...--+..-|.+++.+.+|.+|...+-
T Consensus 233 klv~CYL~~--rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSam 286 (569)
T PF15015_consen 233 KLVTCYLRM--RKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAM 286 (569)
T ss_pred HHHHhhhhc--CCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777 677777777777777777777777777777777777777765543
No 295
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=75.47 E-value=23 Score=49.54 Aligned_cols=133 Identities=13% Similarity=0.060 Sum_probs=93.5
Q ss_pred HHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCC--C---CHHHHHHHHHHHHHhC
Q 043158 43 KLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGS--S---HYESALRCYLQAVEID 117 (1962)
Q Consensus 43 L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~--G---r~eEALe~y~rALaLD 117 (1962)
++..+.|++|+.-|+++-..-| +... .|.|....|..++.+.+ | .+++|+.-|.+ |.-.
T Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~------~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 548 (932)
T PRK13184 485 FLAEKLYDQALIFYRRIRESFP------GRKE---------GYEAQFRLGITLLEKASEQGDPRDFTQALSEFSY-LHGG 548 (932)
T ss_pred HHhhHHHHHHHHHHHHHhhcCC------Cccc---------chHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHH-hcCC
Confidence 3456779999999999876422 1111 26788888888877431 2 47888888875 4567
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCCHHH
Q 043158 118 TKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAI-----GDEVACLSVAELILRHWPSHSRA 191 (1962)
Q Consensus 118 P~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~L-----GdyeeAL~~~~rALeLdPd~a~A 191 (1962)
|.-|-=+...|.+|.++|++++-+.||+-|++.-|+||..-.-.-.+.+++ .+...|+...--++..-|.....
T Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (932)
T PRK13184 549 VGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISS 627 (932)
T ss_pred CCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccc
Confidence 888888899999999999999999999999999999988643222233322 22345555556667777765433
No 296
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=75.17 E-value=11 Score=45.46 Aligned_cols=71 Identities=17% Similarity=0.234 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHH
Q 043158 87 ALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCME 159 (1962)
Q Consensus 87 AykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~ 159 (1962)
...|+=.++.+. ++.+.|+.+-.+.+.++|.|+.-|.-.|.+|.++|-+..|+..++..++.-|+.+.+-.
T Consensus 183 ll~~lk~~~~~e--~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ 253 (269)
T COG2912 183 LLRNLKAALLRE--LQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEM 253 (269)
T ss_pred HHHHHHHHHHHh--hchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHH
Confidence 345677777777 78999999999999999999999999999999999999999999999999999887753
No 297
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=75.04 E-value=3.3 Score=51.17 Aligned_cols=107 Identities=11% Similarity=0.041 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC-------------------CCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 043158 86 LALKNLATVFLQQGSSHYESALRCYLQAVEIDT-------------------KDSVVWNQLGTLACSMGLLSISRWAFEQ 146 (1962)
Q Consensus 86 lAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP-------------------~DaeaW~nLG~al~~LGr~eeAr~alEr 146 (1962)
..-++.|.-.... +++.+|..-|.+++..-. .-.....+++.+...++.+..|+..-..
T Consensus 223 ~~~k~~~~~~~kk--~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~ 300 (372)
T KOG0546|consen 223 EKKKNIGNKEFKK--QRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNE 300 (372)
T ss_pred hhhhccchhhhhh--ccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccc
Confidence 4456777777777 889999999988876422 1234567899999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 043158 147 GLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSRALHV 194 (1962)
Q Consensus 147 ALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~Al~l 194 (1962)
+++.++...++++..+..+..+.++++|++.+..+...+|++.....-
T Consensus 301 ~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~ 348 (372)
T KOG0546|consen 301 ALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEE 348 (372)
T ss_pred ccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHH
Confidence 999999999999999999999999999999999999999998754433
No 298
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=74.73 E-value=71 Score=38.50 Aligned_cols=130 Identities=15% Similarity=0.073 Sum_probs=90.9
Q ss_pred HHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHh----CC
Q 043158 44 LQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSS-HYESALRCYLQAVEI----DT 118 (1962)
Q Consensus 44 ~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~G-r~eEALe~y~rALaL----DP 118 (1962)
.++|+++-|...|.++=...... .+....--...++|.|.-++.. + ++++|...+++|.++ .+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~----------~~~~~~~La~~~yn~G~~l~~~--~~~~~~a~~wL~~a~~~l~~~~~ 71 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSL----------DPDMAEELARVCYNIGKSLLSK--KDKYEEAVKWLQRAYDILEKPGK 71 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcC----------CcHHHHHHHHHHHHHHHHHHHc--CCChHHHHHHHHHHHHHHHhhhh
Confidence 46899999999999875432100 0111112357789999999999 7 999999999999998 33
Q ss_pred CC----------HHHHHHHHHHHHHcCChHHHHH---HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 043158 119 KD----------SVVWNQLGTLACSMGLLSISRW---AFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHW 185 (1962)
Q Consensus 119 ~D----------aeaW~nLG~al~~LGr~eeAr~---alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLd 185 (1962)
.+ ..+...++.++...+.++-... ..+.+-.--|+++..+.-.-.++...++.+++...+.+++.--
T Consensus 72 ~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 72 MDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV 151 (278)
T ss_pred ccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc
Confidence 22 3567788899988887764443 3334444557777776444456666899999999888888753
No 299
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.42 E-value=36 Score=45.08 Aligned_cols=112 Identities=16% Similarity=-0.035 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHh
Q 043158 85 FLALKNLATVFLQQG---SSHYESALRCYLQAVE-------IDTKDSVVWNQLGTLACSMG-----LLSISRWAFEQGLL 149 (1962)
Q Consensus 85 ylAykNLG~lLl~~g---~Gr~eEALe~y~rALa-------LDP~DaeaW~nLG~al~~LG-----r~eeAr~alErALe 149 (1962)
..+...+|.++..-+ ..+++.|+.+|..|.. .. ++.+.+.+|.++..-. ++..|...|.+|-.
T Consensus 244 ~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~--~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~ 321 (552)
T KOG1550|consen 244 SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG--LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE 321 (552)
T ss_pred hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc--CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh
Confidence 467778888887631 2579999999999977 43 6779999999999964 66779999999988
Q ss_pred cCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHhhhcC
Q 043158 150 CSPNNWNCMEKLLEVLIAIG---DEVACLSVAELILRHWPSHSRALHVKNTIEETE 202 (1962)
Q Consensus 150 LdPd~~~Al~nLg~aL~~LG---dyeeAL~~~~rALeLdPd~a~Al~lk~~I~~ad 202 (1962)
. +++.+.+.||.++..-. ++..|..+|..|.+. ++..|.+.++.+.+..
T Consensus 322 ~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G 373 (552)
T KOG1550|consen 322 L--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELG 373 (552)
T ss_pred c--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhC
Confidence 7 67888999998876655 578999999888766 5778888888886643
No 300
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=73.83 E-value=39 Score=42.77 Aligned_cols=133 Identities=13% Similarity=0.052 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcC-CcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 043158 34 TQTYHEGLLKLQSKEYDKAQELLESVLKD-PLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQ 112 (1962)
Q Consensus 34 lalYqkAL~L~qqGRfeEA~eaY~raLa~-p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~r 112 (1962)
.....++..+...++|..|.+.++.+... +. .. .|..+.++...|..--.-++.+|.++++.
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~-------~~----------~~~~~~~l~~~y~~WD~fd~~~A~~~l~~ 194 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRRLPG-------RE----------EYQRYKDLCEGYDAWDRFDHKEALEYLEK 194 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-------hh----------hHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 35567899999999999999999999873 21 10 14556666555544312689999999999
Q ss_pred HHHhCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHh
Q 043158 113 AVEIDT---KDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLI--AIGDEVACLSVAELILRH 184 (1962)
Q Consensus 113 ALaLDP---~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~--~LGdyeeAL~~~~rALeL 184 (1962)
.+..+- .....+..+..+...+..+..+........ .++..+....-+.++.. ..|+|+.|+..+-|++++
T Consensus 195 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl 270 (379)
T PF09670_consen 195 LLKRDKALNQEREGLKELVEVLKALESILSALEDKKQRQ-KKLYYALLADLLANAERRAAQGRYDDAVARLYRALEL 270 (379)
T ss_pred HHHHhhhhHhHHHHHHHHHHHHHHHHhhccchhhhhccc-cccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 887742 234555555555555444443332222221 11111222222223333 359999999999999998
No 301
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=72.65 E-value=1.5e+02 Score=35.75 Aligned_cols=118 Identities=15% Similarity=0.037 Sum_probs=85.7
Q ss_pred cccHHHHHHHHHHHHHCC-CHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCC-CCHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSK-EYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGS-SHYESAL 107 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqG-RfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~-Gr~eEAL 107 (1962)
+.-+..+|+-|..+.+.+ ++++|...++++++.=. .++...........+++..+..++.++.+.+. ...++|.
T Consensus 32 ~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~----~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~ 107 (278)
T PF08631_consen 32 EELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILE----KPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKAL 107 (278)
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH----hhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHH
Confidence 456788999999999999 99999999999987410 00011112233456688999999999998721 1245566
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 043158 108 RCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCS 151 (1962)
Q Consensus 108 e~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLd 151 (1962)
.....+-.--|+.++++..-=.++.+.++.+++...+.+.+.--
T Consensus 108 ~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 108 NALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV 151 (278)
T ss_pred HHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc
Confidence 66666666678888888555566666899999999999998753
No 302
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=72.32 E-value=12 Score=48.15 Aligned_cols=72 Identities=11% Similarity=0.202 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhcCCCCHHHHH
Q 043158 86 LALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGL-LSISRWAFEQGLLCSPNNWNCME 159 (1962)
Q Consensus 86 lAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr-~eeAr~alErALeLdPd~~~Al~ 159 (1962)
-.|.+...+.... +.+.+.-..|.++|...|++|++|.--|.-....+. .+-|+..|.++|+.+|+.+..|.
T Consensus 106 ~lW~~yi~f~kk~--~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~ 178 (568)
T KOG2396|consen 106 KLWLSYIAFCKKK--KTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWK 178 (568)
T ss_pred HHHHHHHHHHHHh--cchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHH
Confidence 3566666655555 568888999999999999999999999988888888 99999999999999999998874
No 303
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=71.95 E-value=8.8 Score=44.90 Aligned_cols=62 Identities=15% Similarity=0.068 Sum_probs=51.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhhc
Q 043158 140 SRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSRALHVKNTIEET 201 (1962)
Q Consensus 140 Ar~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I~~a 201 (1962)
|+.+|.+|+.+.|+....+.+||.+....|+.-+|+-+|-|++...--.+.|..++..+...
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999997765557777777776554
No 304
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=71.91 E-value=55 Score=41.75 Aligned_cols=97 Identities=14% Similarity=0.097 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC----CHHHHHH
Q 043158 103 YESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLL--SISRWAFEQGLLCSPNNWNCMEKLLEVLIAIG----DEVACLS 176 (1962)
Q Consensus 103 ~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~--eeAr~alErALeLdPd~~~Al~nLg~aL~~LG----dyeeAL~ 176 (1962)
+++-+.....||..+|++..+|+...-++.+.+.. ..-+...+++|+.||.+-.+|.-..-|..... ...+=+.
T Consensus 91 ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ 170 (421)
T KOG0529|consen 91 LDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELE 170 (421)
T ss_pred hHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHH
Confidence 67778888999999999999999999999988764 77788999999999999999866665544332 2566677
Q ss_pred HHHHHHHhCCCCHHHHHHHHHhh
Q 043158 177 VAELILRHWPSHSRALHVKNTIE 199 (1962)
Q Consensus 177 ~~~rALeLdPd~a~Al~lk~~I~ 199 (1962)
+..+++.-++.+-.||+.+..+-
T Consensus 171 ftt~~I~~nfSNYsaWhyRs~lL 193 (421)
T KOG0529|consen 171 FTTKLINDNFSNYSAWHYRSLLL 193 (421)
T ss_pred HHHHHHhccchhhhHHHHHHHHH
Confidence 88889988999999999987763
No 305
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.68 E-value=33 Score=47.42 Aligned_cols=58 Identities=17% Similarity=0.093 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 043158 85 FLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLL 149 (1962)
Q Consensus 85 ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALe 149 (1962)
...|-.+|.+.++. |...+|++.|-+| +||..+...-.+..+.|.|++-+.++.-|-+
T Consensus 1104 p~vWsqlakAQL~~--~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRk 1161 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQG--GLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARK 1161 (1666)
T ss_pred hHHHHHHHHHHHhc--CchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 46789999999998 8999999999887 8899999999999999999998888876544
No 306
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=71.01 E-value=24 Score=44.34 Aligned_cols=78 Identities=17% Similarity=0.136 Sum_probs=58.0
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---------c-----C------------CCC---HHHHHHHHH
Q 043158 113 AVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLL---------C-----S------------PNN---WNCMEKLLE 163 (1962)
Q Consensus 113 ALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALe---------L-----d------------Pd~---~~Al~nLg~ 163 (1962)
.|+..|-+.+.+..++.++..+|+...|....|+||= . + |.| ..++++...
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~ 111 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQ 111 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHH
Confidence 3566777777777777777777777777777776653 1 1 122 334677778
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHH
Q 043158 164 VLIAIGDEVACLSVAELILRHWPS-HSR 190 (1962)
Q Consensus 164 aL~~LGdyeeAL~~~~rALeLdPd-~a~ 190 (1962)
.+.+.|-+..|+++++-.+.+||. |+.
T Consensus 112 ~L~~RG~~rTAlE~~KlLlsLdp~~DP~ 139 (360)
T PF04910_consen 112 SLGRRGCWRTALEWCKLLLSLDPDEDPL 139 (360)
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCcc
Confidence 889999999999999999999999 663
No 307
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=70.92 E-value=19 Score=43.95 Aligned_cols=79 Identities=13% Similarity=0.082 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043158 103 YESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELIL 182 (1962)
Q Consensus 103 ~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rAL 182 (1962)
+..=+.-.+++++- ....++..++..+...|+++.+...+++-+.++|-+-++|..+-.++++.|+...|+..|++.-
T Consensus 137 f~~WV~~~R~~l~e--~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 137 FDEWVLEQRRALEE--LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 44444444444433 2456677777777777777777777777777777777777777777777777777777776655
Q ss_pred H
Q 043158 183 R 183 (1962)
Q Consensus 183 e 183 (1962)
.
T Consensus 215 ~ 215 (280)
T COG3629 215 K 215 (280)
T ss_pred H
Confidence 4
No 308
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=70.12 E-value=47 Score=42.13 Aligned_cols=108 Identities=6% Similarity=-0.086 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---cCChHHHHHHHHH-HHhcCCCCHHH
Q 043158 86 LALKNLATVFLQQGSSHYESALRCYLQAVEI----DTKDSVVWNQLGTLACS---MGLLSISRWAFEQ-GLLCSPNNWNC 157 (1962)
Q Consensus 86 lAykNLG~lLl~~g~Gr~eEALe~y~rALaL----DP~DaeaW~nLG~al~~---LGr~eeAr~alEr-ALeLdPd~~~A 157 (1962)
....|+=..|.+. .+|+.=+...+..-.+ -++.+.+-+..|-++.+ .|+.+.|+..+.. .....+.+++.
T Consensus 142 div~~lllSyRdi--qdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 142 DIVINLLLSYRDI--QDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred hHHHHHHHHhhhh--hhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 3444555555555 5666555555444344 44568889999999999 9999999999999 55666788999
Q ss_pred HHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 043158 158 MEKLLEVLIAI---------GDEVACLSVAELILRHWPSHSRALHVK 195 (1962)
Q Consensus 158 l~nLg~aL~~L---------GdyeeAL~~~~rALeLdPd~a~Al~lk 195 (1962)
+.-+|.++-++ ...+.|+.+|+++.+++|++-.+....
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~A 266 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAA 266 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHH
Confidence 99999888654 347899999999999999875544443
No 309
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.98 E-value=1.3e+02 Score=39.38 Aligned_cols=143 Identities=17% Similarity=0.154 Sum_probs=100.6
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 043158 32 HLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYL 111 (1962)
Q Consensus 32 eAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~ 111 (1962)
++.-.+-.|+-.+.-+-++.|+..|..+.+.-. . ..+...+-.|+|..|+.. |+ +...|+
T Consensus 366 ~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~-------------~--~dl~a~~nlnlAi~YL~~--~~---~ed~y~ 425 (629)
T KOG2300|consen 366 EAQIHMLLGLYSHSVNCYENAEFHFIEATKLTE-------------S--IDLQAFCNLNLAISYLRI--GD---AEDLYK 425 (629)
T ss_pred HHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhh-------------H--HHHHHHHHHhHHHHHHHh--cc---HHHHHH
Confidence 344556677777788999999999999987421 0 111345666899999887 33 333444
Q ss_pred HHHHhCCCC----------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHcCCHHHH
Q 043158 112 QAVEIDTKD----------SVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNN-------WNCMEKLLEVLIAIGDEVAC 174 (1962)
Q Consensus 112 rALaLDP~D----------aeaW~nLG~al~~LGr~eeAr~alErALeLdPd~-------~~Al~nLg~aL~~LGdyeeA 174 (1962)
-.=.+.|.+ +.+.|..|......+++.||+..+++.|+.. +. .-.+.-||.+...+|+..++
T Consensus 426 ~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma-naed~~rL~a~~LvLLs~v~lslgn~~es 504 (629)
T KOG2300|consen 426 ALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA-NAEDLNRLTACSLVLLSHVFLSLGNTVES 504 (629)
T ss_pred HHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 333445652 5788999999999999999999999999987 22 22345667788889999999
Q ss_pred HHHHHHHHHh---CCCCHHHHHHH
Q 043158 175 LSVAELILRH---WPSHSRALHVK 195 (1962)
Q Consensus 175 L~~~~rALeL---dPd~a~Al~lk 195 (1962)
....+.++.+ -||.+.-+...
T Consensus 505 ~nmvrpamqlAkKi~Di~vqLws~ 528 (629)
T KOG2300|consen 505 RNMVRPAMQLAKKIPDIPVQLWSS 528 (629)
T ss_pred HhccchHHHHHhcCCCchHHHHHH
Confidence 8877776654 46665444333
No 310
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=69.62 E-value=11 Score=38.00 Aligned_cols=51 Identities=16% Similarity=0.195 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 043158 101 SHYESALRCYLQAVEIDTKD---------SVVWNQLGTLACSMGLLSISRWAFEQGLLCS 151 (1962)
Q Consensus 101 Gr~eEALe~y~rALaLDP~D---------aeaW~nLG~al~~LGr~eeAr~alErALeLd 151 (1962)
|++.+|++.+.+..+..... ..++.++|.+...+|++++|+.++++|+++.
T Consensus 12 ~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 12 GDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred CCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 78999988888877664432 3567778888888888888888888888754
No 311
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=68.04 E-value=23 Score=35.80 Aligned_cols=68 Identities=25% Similarity=0.262 Sum_probs=48.0
Q ss_pred HHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC
Q 043158 40 GLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQAVEIDT 118 (1962)
Q Consensus 40 AL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP 118 (1962)
-+...+.|+|.+|.+.+.+.+...... .. .........+..|+|.+.... |++++|+..+++|+++--
T Consensus 5 ~~~~~~~~dy~~A~d~L~~~fD~~~~~-----~~----~~~~~~~~~all~lA~~~~~~--G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 5 YLNALRSGDYSEALDALHRYFDYAKQS-----NN----SSSNSGLAYALLNLAELHRRF--GHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhc-----cc----chhhHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHH
Confidence 345567899999999999998742100 00 000001235688999999999 999999999999988743
No 312
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=68.02 E-value=66 Score=40.93 Aligned_cols=132 Identities=13% Similarity=-0.044 Sum_probs=75.5
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC
Q 043158 38 HEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQAVEID 117 (1962)
Q Consensus 38 qkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLD 117 (1962)
.++-.+...++|..|.+.|++++...+.. ...-.|..++++...|..--.-++++|.+++.+.+.
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r~l~~-------------~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~~~~-- 199 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRRLLSA-------------VNHTFYEAMIKLTRAYLHWDRFEHEEALDYLNDPLP-- 199 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcccCh-------------hhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhhccc--
Confidence 35557889999999999999999753211 011257788888887766422579999999987332
Q ss_pred CCCHHHHHHHHHH----HHHcCChHHHH---HHHHHHHhcCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHh
Q 043158 118 TKDSVVWNQLGTL----ACSMGLLSISR---WAFEQGLLCSPNNWNCMEKLLEVLI--AIGDEVACLSVAELILRH 184 (1962)
Q Consensus 118 P~DaeaW~nLG~a----l~~LGr~eeAr---~alErALeLdPd~~~Al~nLg~aL~--~LGdyeeAL~~~~rALeL 184 (1962)
+.+...|..+-.- ........-.. .+....-...|..+....-+.++.. ..|+|+.|+.-+-|++++
T Consensus 200 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~na~rr~~~~ry~da~~r~yR~~e~ 275 (380)
T TIGR02710 200 ERLALYQVTSHDELEDVIKRNASILPEIIGSRNGRREAKRRPFLPLLGDLLANAERRATQGRYDDAAARLYRALEL 275 (380)
T ss_pred hhhhhhhhhhhhHHHHHHHhHHhhcchhhhccchhhhhcccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3333333322211 11111111000 1111222222332333333334444 679999999999999887
No 313
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.30 E-value=69 Score=37.03 Aligned_cols=118 Identities=14% Similarity=0.109 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHH-
Q 043158 34 TQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQ- 112 (1962)
Q Consensus 34 lalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~r- 112 (1962)
++.++.|..+.+.|+-.+|..+|.++-+..+.+... +-.+...-|.+|.+. |-|++...-.+.
T Consensus 95 LA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~--------------rd~ARlraa~lLvD~--gsy~dV~srvepL 158 (221)
T COG4649 95 LARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIG--------------RDLARLRAAYLLVDN--GSYDDVSSRVEPL 158 (221)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchh--------------hHHHHHHHHHHHhcc--ccHHHHHHHhhhc
Confidence 667788888999999999999999998753322111 123344445566666 677776554432
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 043158 113 AVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAI 168 (1962)
Q Consensus 113 ALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~L 168 (1962)
+..-+|--..+...||.+..+.|++..|+..|.+... |.+-|..-.+.++++.++
T Consensus 159 a~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~mldl 213 (221)
T COG4649 159 AGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIMLDL 213 (221)
T ss_pred cCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHHHH
Confidence 2233455577888999999999999999999998877 777777777887776554
No 314
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=66.74 E-value=1.6e+02 Score=39.74 Aligned_cols=150 Identities=17% Similarity=0.167 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccc------hhc---------------cCC---CC-------Cchhhh
Q 043158 33 LTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIAN------AQA---------------ADG---KS-------SDGHLL 81 (1962)
Q Consensus 33 AlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~------a~~---------------~d~---~~-------s~s~lL 81 (1962)
|..+.+-|-.-+.+.+++.|..+.+++...|--.. ..+ .|. .+ .+++.+
T Consensus 425 a~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdrii 504 (835)
T KOG2047|consen 425 AEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRII 504 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34455556556677889999999999888763111 011 000 01 113333
Q ss_pred HHh---HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH---cCChHHHHHHHHHHHhcCC-
Q 043158 82 QLR---FLALKNLATVFLQQGSSHYESALRCYLQAVEI--DTKDSVVWNQLGTLACS---MGLLSISRWAFEQGLLCSP- 152 (1962)
Q Consensus 82 qL~---ylAykNLG~lLl~~g~Gr~eEALe~y~rALaL--DP~DaeaW~nLG~al~~---LGr~eeAr~alErALeLdP- 152 (1962)
.|+ ...-.|.|++|... .-+++|...|++-+.+ -|.-.++|.-.-..+.+ --..+-||..||+||+.-|
T Consensus 505 dLriaTPqii~NyAmfLEeh--~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp 582 (835)
T KOG2047|consen 505 DLRIATPQIIINYAMFLEEH--KYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPP 582 (835)
T ss_pred HHhcCCHHHHHHHHHHHHhh--HHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH
Confidence 332 35567999999887 6799999999999888 56778999876655543 2467899999999999666
Q ss_pred CCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHh
Q 043158 153 NNWNCMEKL-LEVLIAIGDEVACLSVAELILRH 184 (1962)
Q Consensus 153 d~~~Al~nL-g~aL~~LGdyeeAL~~~~rALeL 184 (1962)
.+....+-+ +..--.-|-...|+..|++|-..
T Consensus 583 ~~aKtiyLlYA~lEEe~GLar~amsiyerat~~ 615 (835)
T KOG2047|consen 583 EHAKTIYLLYAKLEEEHGLARHAMSIYERATSA 615 (835)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 233332222 22333458888999999887654
No 315
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=66.56 E-value=48 Score=40.86 Aligned_cols=82 Identities=13% Similarity=-0.022 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-c--CCHHHHHHHHH
Q 043158 103 YESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIA-I--GDEVACLSVAE 179 (1962)
Q Consensus 103 ~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~-L--GdyeeAL~~~~ 179 (1962)
.+..+..|++||+.+|++..+|..+=.+..+....+....-+++++..+|+.+..|...-..... . -.+..+...|.
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999998777654443 2 35788888888
Q ss_pred HHHHh
Q 043158 180 LILRH 184 (1962)
Q Consensus 180 rALeL 184 (1962)
++|+.
T Consensus 127 ~~l~~ 131 (321)
T PF08424_consen 127 KCLRA 131 (321)
T ss_pred HHHHH
Confidence 88765
No 316
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=65.44 E-value=49 Score=45.06 Aligned_cols=63 Identities=13% Similarity=0.081 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHH---------------------HHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 043158 86 LALKNLATVFLQQGSSHYESALRCYLQA---------------------VEIDTKDSVVWNQLGTLACSMGLLSISRWAF 144 (1962)
Q Consensus 86 lAykNLG~lLl~~g~Gr~eEALe~y~rA---------------------LaLDP~DaeaW~nLG~al~~LGr~eeAr~al 144 (1962)
..|.=-|+.+... |+.+.|+..|..| ++....|-.+-|.||+-|...|++.+|+..|
T Consensus 913 ~L~~WWgqYlES~--GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~Ff 990 (1416)
T KOG3617|consen 913 SLYSWWGQYLESV--GEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFF 990 (1416)
T ss_pred HHHHHHHHHHhcc--cchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 4566678888877 8999999999855 7778899999999999999999999999999
Q ss_pred HHHHhc
Q 043158 145 EQGLLC 150 (1962)
Q Consensus 145 ErALeL 150 (1962)
.+|-+.
T Consensus 991 TrAqaf 996 (1416)
T KOG3617|consen 991 TRAQAF 996 (1416)
T ss_pred HHHHHH
Confidence 887654
No 317
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.83 E-value=38 Score=44.98 Aligned_cols=101 Identities=13% Similarity=0.099 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 043158 34 TQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQA 113 (1962)
Q Consensus 34 lalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rA 113 (1962)
-.+++.|-.+.+..+|..|++-|..-+..-+. |. .-..+.-..++++.+|+.+ .+.+.|++.+++|
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~------D~------~~~~FaK~qR~l~~CYL~L--~QLD~A~E~~~EA 420 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIIS------DN------YSDRFAKIQRALQVCYLKL--EQLDNAVEVYQEA 420 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccc------hh------hhhHHHHHHHHHHHHHhhH--HHHHHHHHHHHHH
Confidence 34556666677777777777777766652110 00 0000234455666666666 5667777777777
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 043158 114 VEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGL 148 (1962)
Q Consensus 114 LaLDP~DaeaW~nLG~al~~LGr~eeAr~alErAL 148 (1962)
=+.||..+-.-..+-.+...-|.-++|+.|..+..
T Consensus 421 E~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~ 455 (872)
T KOG4814|consen 421 EEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIK 455 (872)
T ss_pred HhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 77777666666666666666666666666555443
No 318
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=64.10 E-value=42 Score=41.85 Aligned_cols=97 Identities=7% Similarity=-0.055 Sum_probs=64.5
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 043158 102 HYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLC--SPNNWNCMEKLLEVLIAIGDEVACLSVAE 179 (1962)
Q Consensus 102 r~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeL--dPd~~~Al~nLg~aL~~LGdyeeAL~~~~ 179 (1962)
++..-...|.-...+.| +|.+-.|.+.+.....-...++...+...+- =.++...+.-.|..|.++|+.++|...|+
T Consensus 311 DW~~I~aLYdaL~~~ap-SPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~ayd 389 (415)
T COG4941 311 DWPAIDALYDALEQAAP-SPVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYD 389 (415)
T ss_pred ChHHHHHHHHHHHHhCC-CCeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHH
Confidence 45544444544444444 4556666666666666666666666665554 23556677777888888888888888888
Q ss_pred HHHHhCCCCHHHHHHHHHhh
Q 043158 180 LILRHWPSHSRALHVKNTIE 199 (1962)
Q Consensus 180 rALeLdPd~a~Al~lk~~I~ 199 (1962)
+|+.+.++.++..+++..+.
T Consensus 390 rAi~La~~~aer~~l~~r~~ 409 (415)
T COG4941 390 RAIALARNAAERAFLRQRLD 409 (415)
T ss_pred HHHHhcCChHHHHHHHHHHH
Confidence 88888888877777766553
No 319
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=61.26 E-value=31 Score=42.09 Aligned_cols=68 Identities=19% Similarity=0.148 Sum_probs=61.9
Q ss_pred hHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 043158 81 LQLRFLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLC 150 (1962)
Q Consensus 81 LqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeL 150 (1962)
-+.+..++..++..+... |+++.+++.+.+.+.++|-|-.+|..+=.++...|+...|+.+|++.=.+
T Consensus 149 ~e~~~~~l~~lae~~~~~--~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 149 EELFIKALTKLAEALIAC--GRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 334678899999999999 89999999999999999999999999999999999999999999877654
No 320
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=61.21 E-value=20 Score=45.51 Aligned_cols=58 Identities=10% Similarity=-0.016 Sum_probs=52.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043158 124 WNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELI 181 (1962)
Q Consensus 124 W~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rA 181 (1962)
--.|..||.++++.+.|+..-.+.|.++|.++.-+..-+.+...|.||.+|...+.-|
T Consensus 231 etklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 231 ETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred HHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999999999999999999999999999999998865443
No 321
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=60.66 E-value=31 Score=48.25 Aligned_cols=97 Identities=14% Similarity=0.056 Sum_probs=77.5
Q ss_pred CCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHc----C---ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 043158 101 SHYESALRCYLQAVEIDTKD---SVVWNQLGTLACSM----G---LLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGD 170 (1962)
Q Consensus 101 Gr~eEALe~y~rALaLDP~D---aeaW~nLG~al~~L----G---r~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGd 170 (1962)
..|++|+..|++...--|+- .++.+++|..+... | .+.+|+.-|++.. --|.-|.-+...|.||+++|+
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 567 (932)
T PRK13184 489 KLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKALVYQRLGE 567 (932)
T ss_pred HHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHHHHHHhhh
Confidence 35999999999999999875 57889999877654 2 4667777776643 456667778888899999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 043158 171 EVACLSVAELILRHWPSHSRALHVKNTI 198 (1962)
Q Consensus 171 yeeAL~~~~rALeLdPd~a~Al~lk~~I 198 (1962)
|++=+.++.-|++.-|+||..-.++..+
T Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (932)
T PRK13184 568 YNEEIKSLLLALKRYSQHPEISRLRDHL 595 (932)
T ss_pred HHHHHHHHHHHHHhcCCCCccHHHHHHH
Confidence 9999999999999999998655555443
No 322
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=60.64 E-value=20 Score=46.19 Aligned_cols=43 Identities=21% Similarity=0.377 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 043158 101 SHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGL 148 (1962)
Q Consensus 101 Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErAL 148 (1962)
|+++.|.+. +..-+++..|..||.++...|+++.|..||.++=
T Consensus 332 g~L~~A~~~-----a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 332 GNLDIALEI-----AKELDDPEKWKQLGDEALRQGNIELAEECYQKAK 374 (443)
T ss_dssp T-HHHHHHH-----CCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred CCHHHHHHH-----HHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 677777654 3344589999999999999999999999999874
No 323
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=60.06 E-value=1e+02 Score=37.64 Aligned_cols=98 Identities=14% Similarity=0.173 Sum_probs=86.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH-HHHHHH
Q 043158 101 SHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGL-LSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEV-ACLSVA 178 (1962)
Q Consensus 101 Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr-~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdye-eAL~~~ 178 (1962)
.+-..|+..-..++.++|.+..+|.-.-.++..++. ..+-+..+...++-+|.+-..|.....++..+|++. .=++..
T Consensus 57 E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~ 136 (318)
T KOG0530|consen 57 EKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFT 136 (318)
T ss_pred ccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHH
Confidence 678899999999999999999999998888888764 667788899999999999999999999999999988 778888
Q ss_pred HHHHHhCCCCHHHHHHHHHh
Q 043158 179 ELILRHWPSHSRALHVKNTI 198 (1962)
Q Consensus 179 ~rALeLdPd~a~Al~lk~~I 198 (1962)
+.++..|..+-.||-.+..+
T Consensus 137 ~~~l~~DaKNYHaWshRqW~ 156 (318)
T KOG0530|consen 137 KLMLDDDAKNYHAWSHRQWV 156 (318)
T ss_pred HHHHhccccchhhhHHHHHH
Confidence 99999998888888766543
No 324
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=58.87 E-value=28 Score=35.17 Aligned_cols=51 Identities=18% Similarity=0.083 Sum_probs=33.1
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHH---HHHHHcCChHHHHHH
Q 043158 91 LATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLG---TLACSMGLLSISRWA 143 (1962)
Q Consensus 91 LG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG---~al~~LGr~eeAr~a 143 (1962)
-|.=++.. .+.++|+..+++||...++.++.|..|| ++++..|+|++++..
T Consensus 12 ~GlkLY~~--~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 12 KGLKLYHQ--NETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred HHHHHhcc--chHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555 5677788888888888777777777776 445555555555544
No 325
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=58.70 E-value=34 Score=42.54 Aligned_cols=70 Identities=11% Similarity=0.017 Sum_probs=53.0
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHH
Q 043158 89 KNLATVFLQQGSSHYESALRCYLQAVEI--DTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEK 160 (1962)
Q Consensus 89 kNLG~lLl~~g~Gr~eEALe~y~rALaL--DP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~n 160 (1962)
.|++.++... .=.+.++.......+. =.+..-.|-..|..+.++|+.++|+.+|++|+.+.++.++..+-
T Consensus 333 LNRAVAla~~--~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l 404 (415)
T COG4941 333 LNRAVALAMR--EGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFL 404 (415)
T ss_pred ehHHHHHHHh--hhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHH
Confidence 4777777665 3366666666655444 34456788889999999999999999999999999998776543
No 326
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=58.61 E-value=20 Score=30.85 Aligned_cols=31 Identities=6% Similarity=-0.199 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHH--HHHHHhcCC
Q 043158 122 VVWNQLGTLACSMGLLSISRWA--FEQGLLCSP 152 (1962)
Q Consensus 122 eaW~nLG~al~~LGr~eeAr~a--lErALeLdP 152 (1962)
+.|+.+|..+...|++++|+.. |+-+..++|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 3455555555555555555555 334444444
No 327
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=58.61 E-value=75 Score=36.07 Aligned_cols=78 Identities=12% Similarity=-0.113 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 043158 121 SVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSRALHVKNTI 198 (1962)
Q Consensus 121 aeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I 198 (1962)
......+..+....++..++...+...-.+.|+.+..-.--|.++...|++.+|+..++.+.+..|..+.+..+++..
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C 87 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC 87 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 355667778888889999999999999999999999999999999999999999999999999999888666666655
No 328
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=57.76 E-value=45 Score=39.04 Aligned_cols=56 Identities=11% Similarity=-0.032 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCCHHHHH
Q 043158 119 KDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPN----NWNCMEKLLEVLIAIGDEVACL 175 (1962)
Q Consensus 119 ~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd----~~~Al~nLg~aL~~LGdyeeAL 175 (1962)
+++++.+.||..|. ..+...|+..|-++|++.+. +++.+..|+.+++.+|+++.|-
T Consensus 139 ~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 139 ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 35666666666665 35566666666666665533 3666667777777777766653
No 329
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.84 E-value=81 Score=42.16 Aligned_cols=91 Identities=13% Similarity=0.139 Sum_probs=70.6
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 043158 92 ATVFLQQGSSHYESALRCYLQAVEIDTKD------SVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVL 165 (1962)
Q Consensus 92 G~lLl~~g~Gr~eEALe~y~rALaLDP~D------aeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL 165 (1962)
|.-+.+. .+|..+++.|...+.--|.| +...+++..+|..+.+.+.|.++++.|-+.||..+-.-.-.-.+.
T Consensus 361 A~~~F~~--~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~ 438 (872)
T KOG4814|consen 361 AKKLFKM--EKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSF 438 (872)
T ss_pred hHHHHHH--HHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 3334444 57899999999888887766 567788889999999999999999999999998888876666666
Q ss_pred HHcCCHHHHHHHHHHHHHh
Q 043158 166 IAIGDEVACLSVAELILRH 184 (1962)
Q Consensus 166 ~~LGdyeeAL~~~~rALeL 184 (1962)
..-|.-++|+.++......
T Consensus 439 ~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 439 LAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHhcchHHHHHHHHHHHhh
Confidence 7778888888876555443
No 330
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=54.40 E-value=2.6e+02 Score=39.11 Aligned_cols=125 Identities=18% Similarity=-0.010 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 043158 34 TQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQA 113 (1962)
Q Consensus 34 lalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rA 113 (1962)
.-....|-.+..+.|++||..+..++...=+ .+ .. ..... +...+---.|.+.... |++++|++.-+.|
T Consensus 416 ~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~----~~-~~--~~~~~--l~ae~~aL~a~val~~--~~~e~a~~lar~a 484 (894)
T COG2909 416 RLVLLQAWLLASQHRLAEAETLIARLEHFLK----AP-MH--SRQGD--LLAEFQALRAQVALNR--GDPEEAEDLARLA 484 (894)
T ss_pred hHHHHHHHHHHHccChHHHHHHHHHHHHHhC----cC-cc--cchhh--HHHHHHHHHHHHHHhc--CCHHHHHHHHHHH
Confidence 3345677778889999999999988875210 00 00 00111 1122233456666667 8999999999999
Q ss_pred HHhCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhc----CCCCHHHHHH--HHHHHHHcC
Q 043158 114 VEIDTKD-----SVVWNQLGTLACSMGLLSISRWAFEQGLLC----SPNNWNCMEK--LLEVLIAIG 169 (1962)
Q Consensus 114 LaLDP~D-----aeaW~nLG~al~~LGr~eeAr~alErALeL----dPd~~~Al~n--Lg~aL~~LG 169 (1962)
+..=|.+ ..+...+|.+.+-.|++..|+.+...+.+. +--+..+|.. -+.++.+.|
T Consensus 485 l~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qG 551 (894)
T COG2909 485 LVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQG 551 (894)
T ss_pred HHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhh
Confidence 9998875 578889999999999999999999999988 4445555543 457888888
No 331
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=53.18 E-value=14 Score=29.05 Aligned_cols=21 Identities=10% Similarity=-0.084 Sum_probs=8.8
Q ss_pred HHHHHHHHHHcCChHHHHHHH
Q 043158 124 WNQLGTLACSMGLLSISRWAF 144 (1962)
Q Consensus 124 W~nLG~al~~LGr~eeAr~al 144 (1962)
.+++|.++..+|++++|+..+
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 334444444444444444333
No 332
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=51.31 E-value=1e+02 Score=41.47 Aligned_cols=147 Identities=16% Similarity=0.114 Sum_probs=85.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHH--------hHHHHHHHHHHHHHcCCCCHHHHH
Q 043158 36 TYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQL--------RFLALKNLATVFLQQGSSHYESAL 107 (1962)
Q Consensus 36 lYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL--------~ylAykNLG~lLl~~g~Gr~eEAL 107 (1962)
...+|-.+-.+|+|.||+++|-.+=. | .+..+-.+..+.++-++.| -...++.+|.-|... |++.+|.
T Consensus 827 yiakaedldehgkf~eaeqlyiti~~-p-~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~--g~lkaae 902 (1636)
T KOG3616|consen 827 YIAKAEDLDEHGKFAEAEQLYITIGE-P-DKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAE--GDLKAAE 902 (1636)
T ss_pred HHHhHHhHHhhcchhhhhheeEEccC-c-hHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhc--cChhHHH
Confidence 44566667777888887777754311 1 0000000111222333333 246788899988888 8899998
Q ss_pred HHHHHHHHhCC-----CCHHHHHHHH-----------------------------HHHHHcCChHHHHHH------HHHH
Q 043158 108 RCYLQAVEIDT-----KDSVVWNQLG-----------------------------TLACSMGLLSISRWA------FEQG 147 (1962)
Q Consensus 108 e~y~rALaLDP-----~DaeaW~nLG-----------------------------~al~~LGr~eeAr~a------lErA 147 (1962)
++|.+|=+-.. .+.++|...- .++.+.|-+.+|+.. |+-|
T Consensus 903 ~~flea~d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~a 982 (1636)
T KOG3616|consen 903 EHFLEAGDFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFA 982 (1636)
T ss_pred HHHHhhhhHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhH
Confidence 88887633221 2333443222 233344444444432 2222
Q ss_pred Hh-----cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 043158 148 LL-----CSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWP 186 (1962)
Q Consensus 148 Le-----LdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdP 186 (1962)
+. ....-+..+..++..|..-|++++|..+|-.|++++.
T Consensus 983 fdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaiklnt 1026 (1636)
T KOG3616|consen 983 FDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNT 1026 (1636)
T ss_pred HHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhccc
Confidence 22 2233466678888889999999999999999999963
No 333
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=50.25 E-value=55 Score=36.40 Aligned_cols=74 Identities=15% Similarity=0.089 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH-hCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHH
Q 043158 86 LALKNLATVFLQQG-SSHYESALRCYLQAVE-IDT-KDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCME 159 (1962)
Q Consensus 86 lAykNLG~lLl~~g-~Gr~eEALe~y~rALa-LDP-~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~ 159 (1962)
....|++-++...- ..+..+.+.+++..+. -.| ..-+..|-|+..+.++|+|+.|+.+.+..|+.+|++..+..
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 45667777766531 1457889999999996 333 35789999999999999999999999999999999998864
No 334
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=49.16 E-value=77 Score=36.02 Aligned_cols=64 Identities=16% Similarity=0.131 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 043158 121 SVVWNQLGTLACSMGLLSISRWAFEQGLLCSPN--N-WNCMEKLLEVLIAIGDEVACLSVAELILRH 184 (1962)
Q Consensus 121 aeaW~nLG~al~~LGr~eeAr~alErALeLdPd--~-~~Al~nLg~aL~~LGdyeeAL~~~~rALeL 184 (1962)
..+|..+|.-+.+.|+++.|+.+|.++...--. + .+.+.++..+....|++..+..++.+|-.+
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 468889999999999999999999998875422 2 555778888889999999999998887765
No 335
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=49.13 E-value=3.4e+02 Score=36.52 Aligned_cols=109 Identities=14% Similarity=0.097 Sum_probs=80.8
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC--CCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC----
Q 043158 84 RFLALKNLATVFLQQGSSHYESALRCYLQAVEIDT--KDS----VVWNQLGTLACSMGLLSISRWAFEQGLLCSPN---- 153 (1962)
Q Consensus 84 ~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP--~Da----eaW~nLG~al~~LGr~eeAr~alErALeLdPd---- 153 (1962)
.+.++.-+|.+|.+.- .++++|..++.+|+.+.. +.. .+-+.++.++.+.+... |...++++|+.-.+
T Consensus 58 ea~~~l~la~iL~~eT-~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~ 135 (608)
T PF10345_consen 58 EARVRLRLASILLEET-ENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHS 135 (608)
T ss_pred HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCch
Confidence 4678889999999753 789999999999988764 433 33557788999988888 99999999987665
Q ss_pred CHHHHHHHHHH-HH-HcCCHHHHHHHHHHHHHhC--CCCHHHHHH
Q 043158 154 NWNCMEKLLEV-LI-AIGDEVACLSVAELILRHW--PSHSRALHV 194 (1962)
Q Consensus 154 ~~~Al~nLg~a-L~-~LGdyeeAL~~~~rALeLd--Pd~a~Al~l 194 (1962)
.|--.+++-.+ +. ..+|+..|+..++...... ++++....+
T Consensus 136 ~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~ 180 (608)
T PF10345_consen 136 AWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVL 180 (608)
T ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHH
Confidence 44445555522 22 2379999999998888775 455544433
No 336
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=48.73 E-value=20 Score=28.26 Aligned_cols=25 Identities=20% Similarity=0.108 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH
Q 043158 155 WNCMEKLLEVLIAIGDEVACLSVAE 179 (1962)
Q Consensus 155 ~~Al~nLg~aL~~LGdyeeAL~~~~ 179 (1962)
|.++.+||.++...||.++|...++
T Consensus 1 ~~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 1 PRARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 3578899999999999999998765
No 337
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=48.33 E-value=64 Score=42.42 Aligned_cols=73 Identities=19% Similarity=0.104 Sum_probs=67.6
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 043158 111 LQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRH 184 (1962)
Q Consensus 111 ~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeL 184 (1962)
++-++.+|.|.+.|+.|-+-+... .++++|..||+-+..-|..+.+|-.......+..+|+.....|.|.|..
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk 82 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK 82 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 678899999999999999998888 9999999999999999999999999999999999999998888877754
No 338
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=47.88 E-value=35 Score=26.52 Aligned_cols=29 Identities=24% Similarity=0.351 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 043158 102 HYESALRCYLQAVEIDTKDSVVWNQLGTL 130 (1962)
Q Consensus 102 r~eEALe~y~rALaLDP~DaeaW~nLG~a 130 (1962)
+.+.|...|++++..-|.++++|...+..
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 46667777777777777777777766543
No 339
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=47.84 E-value=1.7e+02 Score=37.62 Aligned_cols=115 Identities=10% Similarity=0.046 Sum_probs=87.2
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----hHHHHHHHHHHHhcCCCCHHHHH
Q 043158 84 RFLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGL----LSISRWAFEQGLLCSPNNWNCME 159 (1962)
Q Consensus 84 ~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr----~eeAr~alErALeLdPd~~~Al~ 159 (1962)
.|.+|+.+.-++...+..++..-+....++|..||.+-.+|...=-+.....+ ..+-+....++|.-++.+-.||.
T Consensus 108 sY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWh 187 (421)
T KOG0529|consen 108 SYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWH 187 (421)
T ss_pred hHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHH
Confidence 48999999999998864558999999999999999999999776655554443 46667888999999999999999
Q ss_pred HHHHHHHHc------CC------HHHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 043158 160 KLLEVLIAI------GD------EVACLSVAELILRHWPSHSRALHVKNTI 198 (1962)
Q Consensus 160 nLg~aL~~L------Gd------yeeAL~~~~rALeLdPd~a~Al~lk~~I 198 (1962)
....++..+ |+ ...=+.....|+--||++..+|+....+
T Consensus 188 yRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWL 238 (421)
T KOG0529|consen 188 YRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWL 238 (421)
T ss_pred HHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHHh
Confidence 988888744 42 1222334456666778887777664443
No 340
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=47.74 E-value=1.1e+02 Score=43.95 Aligned_cols=141 Identities=14% Similarity=0.064 Sum_probs=90.3
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRC 109 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~ 109 (1962)
++-+..+-..|..+++.|+.++|+..-+++.-.. ... ....+..+ ..+|-|++...... +....|+..
T Consensus 970 ~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~---eR~--~g~ds~~t-----~~~y~nlal~~f~~--~~~~~al~~ 1037 (1236)
T KOG1839|consen 970 PEVASKYRSLAKLSNRLGDNQEAIAQQRKACIIS---ERV--LGKDSPNT-----KLAYGNLALYEFAV--KNLSGALKS 1037 (1236)
T ss_pred hhHHHHHHHHHHHHhhhcchHHHHHhcccceeee---chh--ccCCCHHH-----HHHhhHHHHHHHhc--cCccchhhh
Confidence 3334444445666677777777776665554211 000 00001111 35677777766666 677888888
Q ss_pred HHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHcCCHHH
Q 043158 110 YLQAVEI--------DTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPN--------NWNCMEKLLEVLIAIGDEVA 173 (1962)
Q Consensus 110 y~rALaL--------DP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd--------~~~Al~nLg~aL~~LGdyee 173 (1962)
+.+|+.+ .|.-+....+++.++...++++.|+.+++.|++.+-. ...++..++.+...++++..
T Consensus 1038 ~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~ 1117 (1236)
T KOG1839|consen 1038 LNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRN 1117 (1236)
T ss_pred HHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHH
Confidence 8888765 4666677799999999999999999999999996632 23345666666666666666
Q ss_pred HHHHHHHHH
Q 043158 174 CLSVAELIL 182 (1962)
Q Consensus 174 AL~~~~rAL 182 (1962)
|+.+.+...
T Consensus 1118 al~~ek~t~ 1126 (1236)
T KOG1839|consen 1118 ALEHEKVTY 1126 (1236)
T ss_pred HHHHHhhHH
Confidence 666554443
No 341
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=47.54 E-value=25 Score=43.24 Aligned_cols=60 Identities=12% Similarity=0.112 Sum_probs=53.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHH
Q 043158 101 SHYESALRCYLQAVEIDTKDSVVWNQ-LGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEK 160 (1962)
Q Consensus 101 Gr~eEALe~y~rALaLDP~DaeaW~n-LG~al~~LGr~eeAr~alErALeLdPd~~~Al~n 160 (1962)
+-+.+--..|.+++...|.++++|.- -+--+...++++-+|..|.++|+.+|+.|..|..
T Consensus 121 k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 121 KMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred HHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 55777778899999999999999987 5667788899999999999999999999988754
No 342
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=47.05 E-value=1.2e+02 Score=39.58 Aligned_cols=45 Identities=29% Similarity=0.208 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q 043158 85 FLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSI 139 (1962)
Q Consensus 85 ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~ee 139 (1962)
..-|+.||...+.. |+++-|.+||.++= -|..|.-++...|+.+.
T Consensus 347 ~~~W~~Lg~~AL~~--g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~ 391 (443)
T PF04053_consen 347 PEKWKQLGDEALRQ--GNIELAEECYQKAK--------DFSGLLLLYSSTGDREK 391 (443)
T ss_dssp HHHHHHHHHHHHHT--TBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHH
T ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHhhc--------CccccHHHHHHhCCHHH
Confidence 46899999999999 99999999999872 23344444555555443
No 343
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.99 E-value=86 Score=41.75 Aligned_cols=74 Identities=23% Similarity=0.315 Sum_probs=51.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--------CCCHHHHHHHH----------
Q 043158 101 SHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCS--------PNNWNCMEKLL---------- 162 (1962)
Q Consensus 101 Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLd--------Pd~~~Al~nLg---------- 162 (1962)
|+++.|.+. +.+.++..=|..||.+....|++..|.+||.+|-.+. -++++.+..||
T Consensus 651 grl~iA~~l-----a~e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N 725 (794)
T KOG0276|consen 651 GRLDIAFDL-----AVEANSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNN 725 (794)
T ss_pred CcHHHHHHH-----HHhhcchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccc
Confidence 566666544 3345778889999999999999999999999886543 24444443333
Q ss_pred ---HHHHHcCCHHHHHHHHH
Q 043158 163 ---EVLIAIGDEVACLSVAE 179 (1962)
Q Consensus 163 ---~aL~~LGdyeeAL~~~~ 179 (1962)
.++..+|++++|++.+.
T Consensus 726 ~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 726 LAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred hHHHHHHHcCCHHHHHHHHH
Confidence 34566688888777543
No 344
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=46.31 E-value=65 Score=32.77 Aligned_cols=57 Identities=12% Similarity=-0.014 Sum_probs=45.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHH---HHHHHcCCHHHHHHHHHHHHH
Q 043158 127 LGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLL---EVLIAIGDEVACLSVAELILR 183 (1962)
Q Consensus 127 LG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg---~aL~~LGdyeeAL~~~~rALe 183 (1962)
-|.=+......+.|+..+++||+..++.++.+.-|| .++...|+|.+.+++.-+=++
T Consensus 12 ~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 12 KGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566788999999999999999988877765555 788899999999997654443
No 345
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=44.70 E-value=1.4e+02 Score=40.42 Aligned_cols=61 Identities=18% Similarity=0.251 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHH----------------------HHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 043158 84 RFLALKNLATVFLQQGSSHYESALRCYLQA----------------------VEIDTKDSVVWNQLGTLACSMGLLSISR 141 (1962)
Q Consensus 84 ~ylAykNLG~lLl~~g~Gr~eEALe~y~rA----------------------LaLDP~DaeaW~nLG~al~~LGr~eeAr 141 (1962)
.-.||+|+|..++++ ..+++|.++|.+. ...-|++.++.-.+|..+.+-|--++|.
T Consensus 795 ~e~A~r~ig~~fa~~--~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV 872 (1189)
T KOG2041|consen 795 KEDAFRNIGETFAEM--MEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAV 872 (1189)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHH
Confidence 457888888888887 6778887777632 4456888888888888888888888888
Q ss_pred HHHHH
Q 043158 142 WAFEQ 146 (1962)
Q Consensus 142 ~alEr 146 (1962)
.||-+
T Consensus 873 ~a~Lr 877 (1189)
T KOG2041|consen 873 EAYLR 877 (1189)
T ss_pred HHHHh
Confidence 88754
No 346
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=43.83 E-value=53 Score=28.37 Aligned_cols=34 Identities=6% Similarity=-0.114 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCCC
Q 043158 155 WNCMEKLLEVLIAIGDEVACLSV--AELILRHWPSH 188 (1962)
Q Consensus 155 ~~Al~nLg~aL~~LGdyeeAL~~--~~rALeLdPd~ 188 (1962)
++.+..+|-.++..|++++|+.. |+-+..++|.+
T Consensus 1 ~e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 1 PEYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred CcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 35688899999999999999999 66888887753
No 347
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=43.41 E-value=5.4e+02 Score=34.72 Aligned_cols=134 Identities=10% Similarity=0.027 Sum_probs=93.0
Q ss_pred CCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 043158 47 KEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQ 126 (1962)
Q Consensus 47 GRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~n 126 (1962)
....+....|+..++.|-++. .++.......|+....+-... |++..+.-.|.+++---....+.|.+
T Consensus 269 ~~~~~kr~~fE~~IkrpYfhv----------kpl~~aql~nw~~yLdf~i~~--g~~~~~~~l~ercli~cA~Y~efWik 336 (577)
T KOG1258|consen 269 EEEEEKRWGFEEGIKRPYFHV----------KPLDQAQLKNWRYYLDFEITL--GDFSRVFILFERCLIPCALYDEFWIK 336 (577)
T ss_pred HhHHHHHHhhhhhcccccccc----------CcccHHHHHHHHHHhhhhhhc--ccHHHHHHHHHHHHhHHhhhHHHHHH
Confidence 445556666777666543221 111222335566666666666 88888999999888888888899999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 043158 127 LGTLACSMGLLSISRWAFEQGLLCS-PNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSRAL 192 (1962)
Q Consensus 127 LG~al~~LGr~eeAr~alErALeLd-Pd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~Al 192 (1962)
.++-....|+...|...+.++.++. |.-+..+..-+..--..|++..|...+++...--|+...+-
T Consensus 337 y~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~ 403 (577)
T KOG1258|consen 337 YARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVV 403 (577)
T ss_pred HHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhH
Confidence 9999999999999998888888876 44444444444555566899999998888887668776443
No 348
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=42.68 E-value=71 Score=38.85 Aligned_cols=52 Identities=27% Similarity=0.415 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHhhhCCCCCCchhhhHHHhhccccCCCCCHHHHHHHHh-hh
Q 043158 1445 VRHMLYNDCLSALEVCIEGDLKHFHKARYMLSQGLYKRGEVGDLEKAKEELS-FC 1498 (1962)
Q Consensus 1445 ~w~~~~~~~l~aLr~~~dk~lkW~HK~~YRiA~iLy~~g~~~D~~~AkeEms-~l 1498 (1962)
.-..||.-.+.||+..+. ++=|| |-.-.+.++.|++|++..+++-.+++. +|
T Consensus 123 LLQ~FYeTTL~ALkdAKN-eRLWF-KTNtKLgkl~fd~~e~~kl~KIlkqLh~SC 175 (440)
T KOG1464|consen 123 LLQEFYETTLDALKDAKN-ERLWF-KTNTKLGKLYFDRGEYTKLQKILKQLHQSC 175 (440)
T ss_pred HHHHHHHHHHHHHHhhhc-ceeee-eccchHhhhheeHHHHHHHHHHHHHHHHHh
Confidence 345699999999999554 43698 888899999999999999999999986 55
No 349
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=41.41 E-value=1.8e+02 Score=39.34 Aligned_cols=49 Identities=10% Similarity=-0.067 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 043158 121 SVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSV 177 (1962)
Q Consensus 121 aeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~ 177 (1962)
-.+|+++|.-+..+..+++|+.+|.+.-. ..++..+|+.+.+|++...+
T Consensus 796 e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~ecly~le~f~~LE~l 844 (1189)
T KOG2041|consen 796 EDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQIECLYRLELFGELEVL 844 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHHHHHHHHHhhhhHHHH
Confidence 46899999999999999999999987643 24566666666666665554
No 350
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=40.98 E-value=73 Score=39.28 Aligned_cols=60 Identities=15% Similarity=0.149 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043158 122 VVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELI 181 (1962)
Q Consensus 122 eaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rA 181 (1962)
......+..+...|.+.+|+...++++.+||-.-..+..|-.+|..+||..+|..+|++-
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 455667788999999999999999999999999999999999999999988888877653
No 351
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.79 E-value=8.2e+02 Score=33.20 Aligned_cols=153 Identities=14% Similarity=0.044 Sum_probs=94.4
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHhc-CC-----cccchhccCCC-CCchhhhHHhHHHHHHHHHHHHHcCCCCHH
Q 043158 32 HLTQTYHEGLLKLQSKEYDKAQELLESVLK-DP-----LIANAQAADGK-SSDGHLLQLRFLALKNLATVFLQQGSSHYE 104 (1962)
Q Consensus 32 eAlalYqkAL~L~qqGRfeEA~eaY~raLa-~p-----~lk~a~~~d~~-~s~s~lLqL~ylAykNLG~lLl~~g~Gr~e 104 (1962)
....++|-|.....+|+.+-|.++.+++|= .+ .+..... .-. .....--...|++.+-+=+.+.++ |-+.
T Consensus 283 HvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg-~cRL~y~~~eNR~FyL~l~r~m~~l~~R--GC~r 359 (665)
T KOG2422|consen 283 HVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSG-NCRLPYIYPENRQFYLALFRYMQSLAQR--GCWR 359 (665)
T ss_pred chhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccc-cccCcccchhhHHHHHHHHHHHHHHHhc--CChH
Confidence 345677888888899999999998888762 11 1111100 000 000111223678877777778888 8899
Q ss_pred HHHHHHHHHHHhCCC-CHHHHH-HHHHHHHHcCChHHHHHHHHHH-----HhcCCCCHHHHHHHHHHHHHcCC---HHHH
Q 043158 105 SALRCYLQAVEIDTK-DSVVWN-QLGTLACSMGLLSISRWAFEQG-----LLCSPNNWNCMEKLLEVLIAIGD---EVAC 174 (1962)
Q Consensus 105 EALe~y~rALaLDP~-DaeaW~-nLG~al~~LGr~eeAr~alErA-----LeLdPd~~~Al~nLg~aL~~LGd---yeeA 174 (1962)
.|.+...-.+.+||. ||-+-. -+-..+.+..+|.==+..++.. |..=|+.+=. ..|+..+..... ...|
T Consensus 360 TA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS-~AlA~f~l~~~~~~~rqsa 438 (665)
T KOG2422|consen 360 TALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYS-LALARFFLRKNEEDDRQSA 438 (665)
T ss_pred HHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHH-HHHHHHHHhcCChhhHHHH
Confidence 999999999999999 875443 3344445555565555555544 3333443221 233333333333 6788
Q ss_pred HHHHHHHHHhCCCC
Q 043158 175 LSVAELILRHWPSH 188 (1962)
Q Consensus 175 L~~~~rALeLdPd~ 188 (1962)
+..+.+|+...|.-
T Consensus 439 ~~~l~qAl~~~P~v 452 (665)
T KOG2422|consen 439 LNALLQALKHHPLV 452 (665)
T ss_pred HHHHHHHHHhCcHH
Confidence 88999999998863
No 352
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=38.51 E-value=4.5e+02 Score=34.61 Aligned_cols=133 Identities=11% Similarity=0.066 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHH-HHHHHHHcCCCCHHHHHHHHHHH
Q 043158 35 QTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKN-LATVFLQQGSSHYESALRCYLQA 113 (1962)
Q Consensus 35 alYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykN-LG~lLl~~g~Gr~eEALe~y~rA 113 (1962)
-+-.+|..|++++++.+|+..|-++-+.-. +. +.. ++-..+-+ +=+++.. ++.+.-..+....
T Consensus 8 llc~Qgf~Lqkq~~~~esEkifskI~~e~~-------~~----~f~--lkeEvl~grilnAffl---~nld~Me~~l~~l 71 (549)
T PF07079_consen 8 LLCFQGFILQKQKKFQESEKIFSKIYDEKE-------SS----PFL--LKEEVLGGRILNAFFL---NNLDLMEKQLMEL 71 (549)
T ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHHHHhh-------cc----hHH--HHHHHHhhHHHHHHHH---hhHHHHHHHHHHH
Confidence 456789999999999999999999875310 00 000 01111111 1112222 2345544455555
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-HHH-------------H-HHHHHHHHHcCCHHHHHHHH
Q 043158 114 VEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNN-WNC-------------M-EKLLEVLIAIGDEVACLSVA 178 (1962)
Q Consensus 114 LaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~-~~A-------------l-~nLg~aL~~LGdyeeAL~~~ 178 (1962)
-+..|..+-+..-.|.++.+.|.++.|+.++-.--.--.+. ++. + .-.+..|..+|++.++...+
T Consensus 72 ~~~~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iL 151 (549)
T PF07079_consen 72 RQQFGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAIL 151 (549)
T ss_pred HHhcCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 56678888888888999999999999998886544432111 111 1 23456788899999998877
Q ss_pred HHHHH
Q 043158 179 ELILR 183 (1962)
Q Consensus 179 ~rALe 183 (1962)
.+.+.
T Consensus 152 n~i~~ 156 (549)
T PF07079_consen 152 NRIIE 156 (549)
T ss_pred HHHHH
Confidence 66554
No 353
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=37.42 E-value=3.6e+02 Score=37.84 Aligned_cols=133 Identities=20% Similarity=0.160 Sum_probs=87.1
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcC-CcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 043158 36 TYHEGLLKLQSKEYDKAQELLESVLKD-PLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQAV 114 (1962)
Q Consensus 36 lYqkAL~L~qqGRfeEA~eaY~raLa~-p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rAL 114 (1962)
.--+|...+..|++++|+++.+.++.. |. . . ...+..++.++|.+..-+ |++++|+.+-.+|.
T Consensus 461 ~aL~a~val~~~~~e~a~~lar~al~~L~~-~--~-----------~~~r~~~~sv~~~a~~~~--G~~~~Al~~~~~a~ 524 (894)
T COG2909 461 QALRAQVALNRGDPEEAEDLARLALVQLPE-A--A-----------YRSRIVALSVLGEAAHIR--GELTQALALMQQAE 524 (894)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhccc-c--c-----------chhhhhhhhhhhHHHHHh--chHHHHHHHHHHHH
Confidence 344677788899999999999999863 21 0 0 011346788899999888 99999999999998
Q ss_pred Hh----CCCCHHHHHHH--HHHHHHcCC--hHHHHHHHH----HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043158 115 EI----DTKDSVVWNQL--GTLACSMGL--LSISRWAFE----QGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELIL 182 (1962)
Q Consensus 115 aL----DP~DaeaW~nL--G~al~~LGr--~eeAr~alE----rALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rAL 182 (1962)
+. +--.-.+|-.+ +.++..+|+ +.+....|. +-+.-.|-+.....-.+.++..--+++.+..-.+.++
T Consensus 525 ~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~ 604 (894)
T COG2909 525 QMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGI 604 (894)
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcc
Confidence 88 66667777666 788888882 222222222 2223345555555555555555445666666555555
Q ss_pred Hh
Q 043158 183 RH 184 (1962)
Q Consensus 183 eL 184 (1962)
+.
T Consensus 605 ~~ 606 (894)
T COG2909 605 EV 606 (894)
T ss_pred hh
Confidence 44
No 354
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.30 E-value=1.1e+02 Score=41.00 Aligned_cols=82 Identities=20% Similarity=0.231 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHH
Q 043158 86 LALKNLATVFLQQGSSHYESALRCYLQAVEI--------DTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNC 157 (1962)
Q Consensus 86 lAykNLG~lLl~~g~Gr~eEALe~y~rALaL--------DP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~A 157 (1962)
.-|+.||.+.+.. |++..|.+||.+|-.+ ..++++....+|....+.|+...|-.||-..= +.
T Consensus 667 ~Kw~~Lg~~al~~--~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g----~~--- 737 (794)
T KOG0276|consen 667 VKWRQLGDAALSA--GELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSG----DY--- 737 (794)
T ss_pred HHHHHHHHHHhhc--ccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcC----CH---
Confidence 4688999999999 8999999999998443 45788999999999999999998877664321 11
Q ss_pred HHHHHHHHHHcCCHHHHHHH
Q 043158 158 MEKLLEVLIAIGDEVACLSV 177 (1962)
Q Consensus 158 l~nLg~aL~~LGdyeeAL~~ 177 (1962)
..-..+|...+|+.+|.-.
T Consensus 738 -~~C~~lLi~t~r~peAal~ 756 (794)
T KOG0276|consen 738 -EECLELLISTQRLPEAALF 756 (794)
T ss_pred -HHHHHHHHhcCcCcHHHHH
Confidence 1233567777888777543
No 355
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=37.24 E-value=39 Score=29.62 Aligned_cols=29 Identities=17% Similarity=0.203 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 043158 122 VVWNQLGTLACSMGLLSISRWAFEQGLLC 150 (1962)
Q Consensus 122 eaW~nLG~al~~LGr~eeAr~alErALeL 150 (1962)
+++..||.+.+..++|+.|+.-|+++|++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34555666666666666666666666654
No 356
>PRK09687 putative lyase; Provisional
Probab=37.08 E-value=8.7e+02 Score=29.77 Aligned_cols=78 Identities=10% Similarity=0.059 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043158 103 YESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELIL 182 (1962)
Q Consensus 103 ~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rAL 182 (1962)
..+|.+.+.+++ ...+.++.......+.++|. ..|+..+.++++-.. .......+|-.+|+. +|+..+.+.+
T Consensus 190 ~~~~~~~L~~~L--~D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~~----~~~~a~~ALg~ig~~-~a~p~L~~l~ 261 (280)
T PRK09687 190 NPDIREAFVAML--QDKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKGT----VGDLIIEAAGELGDK-TLLPVLDTLL 261 (280)
T ss_pred CHHHHHHHHHHh--cCCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCCc----hHHHHHHHHHhcCCH-hHHHHHHHHH
Confidence 457777777777 44467777777777777777 568888888876432 345566777788884 6888888888
Q ss_pred HhCCCC
Q 043158 183 RHWPSH 188 (1962)
Q Consensus 183 eLdPd~ 188 (1962)
+.+|+.
T Consensus 262 ~~~~d~ 267 (280)
T PRK09687 262 YKFDDN 267 (280)
T ss_pred hhCCCh
Confidence 777743
No 357
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=36.52 E-value=1e+02 Score=36.22 Aligned_cols=54 Identities=17% Similarity=0.202 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHH
Q 043158 85 FLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKD----SVVWNQLGTLACSMGLLSISR 141 (1962)
Q Consensus 85 ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~D----aeaW~nLG~al~~LGr~eeAr 141 (1962)
......||.+|... +.++|+..|.+||++.+.+ +++...|+.++.++|+++.|-
T Consensus 141 ~elq~aLAtyY~kr---D~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 141 AELQYALATYYTKR---DPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHHHcc---CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 56777888888865 7999999999999986654 899999999999999998873
No 358
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=36.17 E-value=6.9e+02 Score=33.76 Aligned_cols=139 Identities=14% Similarity=0.099 Sum_probs=92.3
Q ss_pred cccHHHHHHHHHHHHHC-CCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQS-KEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALR 108 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qq-GRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe 108 (1962)
..||...++.|-.|+.. .++++|+.+..+++.... . .....+++.+..-++.++.+. +... |+.
T Consensus 56 ~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~-------~-----~~~~d~k~~~~~ll~~i~~~~--~~~~-a~~ 120 (608)
T PF10345_consen 56 RQEARVRLRLASILLEETENLDLAETYLEKAILLCE-------R-----HRLTDLKFRCQFLLARIYFKT--NPKA-ALK 120 (608)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc-------c-----cchHHHHHHHHHHHHHHHHhc--CHHH-HHH
Confidence 44778889999888854 999999999999876421 0 233445777788889999987 4444 999
Q ss_pred HHHHHHHhCCC-CHHHHHHHHHH-----HHHcCChHHHHHHHHHHHhcC--CCCHHHH--HHH--HHHHHHcCCHHHHHH
Q 043158 109 CYLQAVEIDTK-DSVVWNQLGTL-----ACSMGLLSISRWAFEQGLLCS--PNNWNCM--EKL--LEVLIAIGDEVACLS 176 (1962)
Q Consensus 109 ~y~rALaLDP~-DaeaW~nLG~a-----l~~LGr~eeAr~alErALeLd--Pd~~~Al--~nL--g~aL~~LGdyeeAL~ 176 (1962)
...++++.--+ ....|+..=+. +...+++..|+..++...... +.++.+. ..+ +.+....+..++++.
T Consensus 121 ~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~ 200 (608)
T PF10345_consen 121 NLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLE 200 (608)
T ss_pred HHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHH
Confidence 99999988666 22333332222 222379999999999988877 3554443 222 234444566667776
Q ss_pred HHHHHHH
Q 043158 177 VAELILR 183 (1962)
Q Consensus 177 ~~~rALe 183 (1962)
...++..
T Consensus 201 ~l~~~~~ 207 (608)
T PF10345_consen 201 LLQRAIA 207 (608)
T ss_pred HHHHHHH
Confidence 6655543
No 359
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=35.63 E-value=63 Score=25.06 Aligned_cols=30 Identities=23% Similarity=0.213 Sum_probs=23.5
Q ss_pred CChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 043158 135 GLLSISRWAFEQGLLCSPNNWNCMEKLLEV 164 (1962)
Q Consensus 135 Gr~eeAr~alErALeLdPd~~~Al~nLg~a 164 (1962)
|..+.|+..|++++...|..+..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567788888888888888888888766543
No 360
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=34.76 E-value=4.1e+02 Score=32.11 Aligned_cols=110 Identities=15% Similarity=0.142 Sum_probs=79.2
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHH---HHHHHHHHH--H-
Q 043158 94 VFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNC---MEKLLEVLI--A- 167 (1962)
Q Consensus 94 lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~A---l~nLg~aL~--~- 167 (1962)
-+++. +++.+|+...++-+.-.|.|+....-+=.+++-.|+++.|..-++-+-++.|++..- +.++..+-. .
T Consensus 10 eLL~~--~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ea~R~e 87 (273)
T COG4455 10 ELLDD--NSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCEAARNE 87 (273)
T ss_pred HHHHh--ccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHH
Confidence 34455 689999999999999999999999999999999999999999999999999988443 333332211 1
Q ss_pred ----------c-CCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHhhhcCCCC
Q 043158 168 ----------I-GDEVACLSVAELILRHWPS-HSR-ALHVKNTIEETEPVP 205 (1962)
Q Consensus 168 ----------L-GdyeeAL~~~~rALeLdPd-~a~-Al~lk~~I~~adP~~ 205 (1962)
+ |...+=...+..|+.++.+ +.. .-.++..-.++.|.+
T Consensus 88 vfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~ 138 (273)
T COG4455 88 VFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVP 138 (273)
T ss_pred HhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCC
Confidence 2 3666667777788888766 333 333344444444443
No 361
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=34.28 E-value=1.4e+02 Score=32.26 Aligned_cols=81 Identities=11% Similarity=0.111 Sum_probs=48.3
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 043158 92 ATVFLQQGSSHYESALRCYLQAVEIDTKDSVVW---NQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAI 168 (1962)
Q Consensus 92 G~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW---~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~L 168 (1962)
+.-++++ |++-+|++..+..+...+++...| +.=|.++. +.|-..+..+....+-
T Consensus 3 A~~~~~r--GnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~------------~lA~~ten~d~k~~yL-------- 60 (111)
T PF04781_consen 3 AKDYFAR--GNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFY------------KLAKKTENPDVKFRYL-------- 60 (111)
T ss_pred HHHHHHc--cCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHH------------HHHHhccCchHHHHHH--------
Confidence 4455666 778888888888887777777554 22233332 2333333222332222
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 043158 169 GDEVACLSVAELILRHWPSHSRALHVKNT 197 (1962)
Q Consensus 169 GdyeeAL~~~~rALeLdPd~a~Al~lk~~ 197 (1962)
-.++++|.++..+.|..+..++.++.
T Consensus 61 ---l~sve~~s~a~~Lsp~~A~~L~~la~ 86 (111)
T PF04781_consen 61 ---LGSVECFSRAVELSPDSAHSLFELAS 86 (111)
T ss_pred ---HHhHHHHHHHhccChhHHHHHHHHHH
Confidence 34777888888998888766665544
No 362
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=34.27 E-value=5.9e+02 Score=34.39 Aligned_cols=108 Identities=16% Similarity=0.089 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHhcCCCC---HHHHHH
Q 043158 85 FLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACS-MGLLSISRWAFEQGLLCSPNN---WNCMEK 160 (1962)
Q Consensus 85 ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~-LGr~eeAr~alErALeLdPd~---~~Al~n 160 (1962)
|..|+-.|..-... |..+.+.+.|+++++-=|-..++|...-..+.. -|+...-+..|++|+....-+ -+.|..
T Consensus 79 ~gyW~kfA~~E~kl--g~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdk 156 (577)
T KOG1258|consen 79 YGYWKKFADYEYKL--GNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDK 156 (577)
T ss_pred HHHHHHHHHHHHHh--hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHH
Confidence 56777888877778 889999999999999999999999987765554 477777888999999877654 344666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 043158 161 LLEVLIAIGDEVACLSVAELILRHWPSHSRALHVK 195 (1962)
Q Consensus 161 Lg~aL~~LGdyeeAL~~~~rALeLdPd~a~Al~lk 195 (1962)
........+++..-...|+|.|+. |.+.-+.+..
T Consensus 157 yie~en~qks~k~v~~iyeRilei-P~~~~~~~f~ 190 (577)
T KOG1258|consen 157 YIEFENGQKSWKRVANIYERILEI-PLHQLNRHFD 190 (577)
T ss_pred HHHHHhccccHHHHHHHHHHHHhh-hhhHhHHHHH
Confidence 666667788899999999999988 7665555443
No 363
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=34.00 E-value=1.3e+02 Score=39.08 Aligned_cols=48 Identities=10% Similarity=-0.133 Sum_probs=31.7
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 043158 131 ACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAE 179 (1962)
Q Consensus 131 l~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~ 179 (1962)
+...|+|+++.-.-.-..+++| .+.++.-+|.+++.-.+|.+|..++.
T Consensus 472 Lysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~ 519 (549)
T PF07079_consen 472 LYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQ 519 (549)
T ss_pred HHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4556666666666666666666 66666666666666666666666554
No 364
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=32.95 E-value=2.9e+02 Score=36.15 Aligned_cols=130 Identities=13% Similarity=-0.022 Sum_probs=85.8
Q ss_pred HHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHH
Q 043158 44 LQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVV 123 (1962)
Q Consensus 44 ~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~Daea 123 (1962)
...|+.-.|-.-...+|...+ ++ +-..+ -.+.++..+ |.|+.|.....-|=.+-..-..+
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~------~~-----p~~i~-------l~~~i~~~l--g~ye~~~~~~s~~~~~~~s~~~~ 359 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQ------QD-----PVLIQ-------LRSVIFSHL--GYYEQAYQDISDVEKIIGTTDST 359 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCC------CC-----chhhH-------HHHHHHHHh--hhHHHHHHHhhchhhhhcCCchH
Confidence 357888888877777776421 01 00111 234444555 66777776665554443333444
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 043158 124 WNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSRALH 193 (1962)
Q Consensus 124 W~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~Al~ 193 (1962)
..-+-+-+..+|++++|...-+-.|.-.-..++.+.--+.--.++|-++++..+.++.+.++|....+|+
T Consensus 360 ~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v 429 (831)
T PRK15180 360 LRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWV 429 (831)
T ss_pred HHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccce
Confidence 5555567778899999988888777766677777665556667788899999999999999887654443
No 365
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=32.86 E-value=1.6e+02 Score=38.36 Aligned_cols=80 Identities=14% Similarity=0.068 Sum_probs=59.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043158 101 SHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAEL 180 (1962)
Q Consensus 101 Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~r 180 (1962)
|++..|-.-...||...|.+|+.-...++++..+|.|+.|...+.-+=..=..--.+..-+-.-+..+|++++|.....-
T Consensus 303 gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~ 382 (831)
T PRK15180 303 GDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEM 382 (831)
T ss_pred cCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHH
Confidence 78888888889999999999999999999999999999888776544333333334444455567778888888774433
No 366
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=31.79 E-value=1.5e+02 Score=35.53 Aligned_cols=62 Identities=15% Similarity=0.051 Sum_probs=57.4
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 043158 129 TLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSR 190 (1962)
Q Consensus 129 ~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~ 190 (1962)
..+.+-++..+|+...+.-++-+|.+..+..-|-.+|...|+++.|+..++-+-.+.|++..
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 45677899999999999999999999999999999999999999999999999999999864
No 367
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=31.56 E-value=1.6e+02 Score=36.51 Aligned_cols=55 Identities=15% Similarity=0.112 Sum_probs=48.0
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 043158 91 LATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQG 147 (1962)
Q Consensus 91 LG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErA 147 (1962)
-+..+... |.+.+|+..-++++.+||=+-..|..|-+++..+|+--.|...|++-
T Consensus 285 va~~yle~--g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 285 VARAYLEA--GKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHc--CChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 34455566 89999999999999999999999999999999999988888877753
No 368
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=30.98 E-value=61 Score=31.03 Aligned_cols=32 Identities=13% Similarity=0.224 Sum_probs=29.1
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLK 61 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa 61 (1962)
.+.|..+.++|+..-+.|++++|..+|.+++.
T Consensus 2 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 2 LDKAIELIKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 35688899999999999999999999999986
No 369
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=30.14 E-value=1.2e+02 Score=33.72 Aligned_cols=56 Identities=11% Similarity=0.044 Sum_probs=41.1
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 043158 119 KDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVAC 174 (1962)
Q Consensus 119 ~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeA 174 (1962)
..++.....+......|+++-|......++..+|++..+..-++.+|.++|.-.+.
T Consensus 68 GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~~ 123 (141)
T PF14863_consen 68 GGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSEN 123 (141)
T ss_dssp TCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-SS
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhccC
Confidence 44566666677777888899999999999999999999888888888888764443
No 370
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=29.77 E-value=1.3e+02 Score=35.10 Aligned_cols=29 Identities=14% Similarity=-0.123 Sum_probs=18.6
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 043158 168 IGDEVACLSVAELILRHWPSHSRALHVKNTI 198 (1962)
Q Consensus 168 LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I 198 (1962)
+.|.+.|.++.-+|.+++ ++.|-.+..+.
T Consensus 181 ~kDMdka~qfa~kACel~--~~~aCAN~SrM 209 (248)
T KOG4014|consen 181 SKDMDKALQFAIKACELD--IPQACANVSRM 209 (248)
T ss_pred hHhHHHHHHHHHHHHhcC--ChHHHhhHHHH
Confidence 357788888888888885 33444444443
No 371
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=29.32 E-value=1.2e+02 Score=39.32 Aligned_cols=139 Identities=13% Similarity=0.121 Sum_probs=67.6
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHh-HHHHHHHHHHHHHcCCCCHHHHHHHH
Q 043158 32 HLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLR-FLALKNLATVFLQQGSSHYESALRCY 110 (1962)
Q Consensus 32 eAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~-ylAykNLG~lLl~~g~Gr~eEALe~y 110 (1962)
.....++.|.++...|+|.+|+..|+.+|..-++.. . +...-...+-++- ----|-+|.-+ +.-
T Consensus 203 ~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~v--v-~~~~E~~e~~eli~icrEYilgl~i------------El~ 267 (422)
T PF06957_consen 203 SLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLV--V-ESREEEDEAKELIEICREYILGLSI------------ELE 267 (422)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC----B-SSCHHHHHHHHHHHHHHHHHHHHHH------------HHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheee--e-cCHHHHHHHHHHHHHHHHHHHHHHH------------HHH
Confidence 445678899999999999999999999997321110 0 1000001111110 00111222211 111
Q ss_pred HHHHHhCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCC
Q 043158 111 LQAVEIDTKDS-VVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLL-EVLIAIGDEVACLSVAELILRHWPSH 188 (1962)
Q Consensus 111 ~rALaLDP~Da-eaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg-~aL~~LGdyeeAL~~~~rALeLdPd~ 188 (1962)
++.+.-++ . +.-++ .-+.+|=.-..+.|.|.-.-.+.| .+.+.+++|..|....+|.|++.|..
T Consensus 268 Rr~l~~~~--~~~~kR~------------lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 268 RRELPKDP--VEDQKRN------------LELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HCTS-TTT--HHHHHHH------------HHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HHhccccc--hhhHHHH------------HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 11211111 1 00000 112334344455555544333333 45678899999999999999999988
Q ss_pred HHHHHHHHHhh
Q 043158 189 SRALHVKNTIE 199 (1962)
Q Consensus 189 a~Al~lk~~I~ 199 (1962)
..+.-.+..+.
T Consensus 334 ~~a~qArKil~ 344 (422)
T PF06957_consen 334 EVAEQARKILQ 344 (422)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 76555555543
No 372
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=28.59 E-value=70 Score=32.12 Aligned_cols=32 Identities=6% Similarity=-0.003 Sum_probs=29.5
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLK 61 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa 61 (1962)
++.|..+..+|..+-+.|++++|+.+|+++++
T Consensus 3 ~~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 3 EEMARKYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 56788999999999999999999999999886
No 373
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.41 E-value=3e+02 Score=38.53 Aligned_cols=29 Identities=17% Similarity=0.308 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Q 043158 33 LTQTYHEGLLKLQSKEYDKAQELLESVLK 61 (1962)
Q Consensus 33 AlalYqkAL~L~qqGRfeEA~eaY~raLa 61 (1962)
..+.+++|..+-..|+|.+|+++|+.+|-
T Consensus 991 l~~kl~~gy~ltt~gKf~eAie~Frsii~ 1019 (1202)
T KOG0292|consen 991 LNKKLQKGYKLTTEGKFGEAIEKFRSIIY 1019 (1202)
T ss_pred HHHHHHHHHhhhccCcHHHHHHHHHHHHh
Confidence 45678899999999999999999999885
No 374
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=27.15 E-value=1.7e+02 Score=42.16 Aligned_cols=140 Identities=16% Similarity=0.122 Sum_probs=105.8
Q ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC--cccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHH
Q 043158 31 SHLTQTYHEGLLKLQSKEYDKAQELLESVLKDP--LIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALR 108 (1962)
Q Consensus 31 eeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p--~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe 108 (1962)
.++...++.+-....+|.+.+|.+ .-+.+..- .+..-.+ --...|.-++.++... |+.++|+.
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~------------~~~~~~~~La~l~~~~--~d~~~Ai~ 994 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHP------------EVASKYRSLAKLSNRL--GDNQEAIA 994 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcch------------hHHHHHHHHHHHHhhh--cchHHHHH
Confidence 567788888888888999999877 44444421 0000000 0236788899999999 89999999
Q ss_pred HHHHHHHh-------C-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-----CCCHHH---HHHHHHHHHHcCCHH
Q 043158 109 CYLQAVEI-------D-TKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCS-----PNNWNC---MEKLLEVLIAIGDEV 172 (1962)
Q Consensus 109 ~y~rALaL-------D-P~DaeaW~nLG~al~~LGr~eeAr~alErALeLd-----Pd~~~A---l~nLg~aL~~LGdye 172 (1962)
.-.+|.-+ | |++.-.+-+++......+....|...+-+|+.+. |+||+. -.|++.+++.+++++
T Consensus 995 ~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d 1074 (1236)
T KOG1839|consen 995 QQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEAD 1074 (1236)
T ss_pred hcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHH
Confidence 87776543 2 4567888999999999999999999998888754 555554 588999999999999
Q ss_pred HHHHHHHHHHHhC
Q 043158 173 ACLSVAELILRHW 185 (1962)
Q Consensus 173 eAL~~~~rALeLd 185 (1962)
.|+.+.+.|+++.
T Consensus 1075 ~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1075 TALRYLESALAKN 1087 (1236)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999853
No 375
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=27.12 E-value=1.7e+02 Score=37.82 Aligned_cols=82 Identities=13% Similarity=0.077 Sum_probs=58.4
Q ss_pred CCHHHHHHHHHH-----HHHhCCCCHHHHHHHH--------HHHHHcCChHHHHHHHHHHHhcC---------CCCHHHH
Q 043158 101 SHYESALRCYLQ-----AVEIDTKDSVVWNQLG--------TLACSMGLLSISRWAFEQGLLCS---------PNNWNCM 158 (1962)
Q Consensus 101 Gr~eEALe~y~r-----ALaLDP~DaeaW~nLG--------~al~~LGr~eeAr~alErALeLd---------Pd~~~Al 158 (1962)
.++.+-++.+++ ++.-+.+...++..|| ++++-+|+|..|+.+++.. .++ +-|...+
T Consensus 89 S~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~ 167 (404)
T PF10255_consen 89 SQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTY 167 (404)
T ss_pred HhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehH
Confidence 567777766666 2233334445555555 8889999999999988742 222 2345557
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 043158 159 EKLLEVLIAIGDEVACLSVAELILR 183 (1962)
Q Consensus 159 ~nLg~aL~~LGdyeeAL~~~~rALe 183 (1962)
+-.|-++..++||.+|++.+...|-
T Consensus 168 YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 168 YYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887764
No 376
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=26.93 E-value=3.5e+02 Score=34.10 Aligned_cols=65 Identities=20% Similarity=0.129 Sum_probs=47.5
Q ss_pred hCCCCHHH--HHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043158 116 IDTKDSVV--WNQLGTLACSMGLLSISRWAFEQGLLCSPNN--WNCMEKLLEVLIAIGDEVACLSVAEL 180 (1962)
Q Consensus 116 LDP~Daea--W~nLG~al~~LGr~eeAr~alErALeLdPd~--~~Al~nLg~aL~~LGdyeeAL~~~~r 180 (1962)
..+.+.-+ -++|+.+.+++|+.++|+..++...+--|-- ...+.||.+++..+.-|.++...+.+
T Consensus 268 rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLak 336 (556)
T KOG3807|consen 268 RRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAK 336 (556)
T ss_pred hcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444433 3678999999999999999999888776622 34578888888888777777665443
No 377
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=26.69 E-value=1.1e+02 Score=27.06 Aligned_cols=29 Identities=28% Similarity=0.468 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC
Q 043158 87 ALKNLATVFLQQGSSHYESALRCYLQAVEID 117 (1962)
Q Consensus 87 AykNLG~lLl~~g~Gr~eEALe~y~rALaLD 117 (1962)
.|-.||.+-+.. ++|++|+..|.+||.+.
T Consensus 3 v~~~Lgeisle~--e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 3 VYDLLGEISLEN--ENFEQAIEDYEKALEIQ 31 (38)
T ss_pred HHHHHHHHHHHh--ccHHHHHHHHHHHHHHH
Confidence 577889999998 89999999999999874
No 378
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=26.50 E-value=1.8e+02 Score=26.38 Aligned_cols=25 Identities=24% Similarity=0.120 Sum_probs=17.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHh
Q 043158 125 NQLGTLACSMGLLSISRWAFEQGLL 149 (1962)
Q Consensus 125 ~nLG~al~~LGr~eeAr~alErALe 149 (1962)
++|+.+|..+|+.+.|+..++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4667777777777777777777773
No 379
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=24.97 E-value=81 Score=31.51 Aligned_cols=33 Identities=9% Similarity=0.007 Sum_probs=29.5
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKD 62 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~ 62 (1962)
...|..+..+|..+-+.|++++|+.+|.+++..
T Consensus 3 ~~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 3 ELAAKEVLKRAVELDQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 456788999999999999999999999999873
No 380
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=24.58 E-value=4.5e+02 Score=29.97 Aligned_cols=74 Identities=11% Similarity=-0.136 Sum_probs=60.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 043158 125 NQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSRALHVKNTI 198 (1962)
Q Consensus 125 ~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I 198 (1962)
..+..+....++..++...+...--+.|+.++...--|.++...|++.+|++.++...+-.|..+.+..+++..
T Consensus 14 i~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~C 87 (153)
T TIGR02561 14 IEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALC 87 (153)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHH
Confidence 33444445589999999999999999999999999999999999999999999999888877766655555554
No 381
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=24.50 E-value=89 Score=31.34 Aligned_cols=33 Identities=15% Similarity=0.049 Sum_probs=29.6
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKD 62 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~ 62 (1962)
+..|..+..+|..+-+.|+|++|..+|..+++.
T Consensus 3 e~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 3 ERDAVQFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 456888999999999999999999999999873
No 382
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=24.38 E-value=3.1e+02 Score=30.35 Aligned_cols=72 Identities=14% Similarity=0.079 Sum_probs=49.3
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCC-cccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 043158 36 TYHEGLLKLQSKEYDKAQELLESVLKDP-LIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQA 113 (1962)
Q Consensus 36 lYqkAL~L~qqGRfeEA~eaY~raLa~p-~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rA 113 (1962)
....|-...+.+++-.|+-.|++++..- .+. . ........++.+.....+|||.++... |+.+-.+.+++-|
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~---~-~~~~el~dll~i~VisCHNLA~FWR~~--gd~~yELkYLqlA 76 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEID---E-SNEIELEDLLTISVISCHNLADFWRSQ--GDSDYELKYLQLA 76 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhc---c-cccccHHHHHHHHHHHHhhHHHHHHHc--CChHHHHHHHHHH
Confidence 4456667788999999999999999741 100 0 011122334556788999999999999 7887777776533
No 383
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=23.90 E-value=3.6e+02 Score=41.45 Aligned_cols=94 Identities=18% Similarity=0.123 Sum_probs=75.1
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHH
Q 043158 88 LKNLATVFLQQGSSHYESALRCYLQAVEI-------DTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEK 160 (1962)
Q Consensus 88 ykNLG~lLl~~g~Gr~eEALe~y~rALaL-------DP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~n 160 (1962)
|.|+...-... .+..+-+-.++|++-. +..-.+.|...|++.+..|+++.|..++-.|.+.. -+.+..-
T Consensus 1632 W~~Rl~~tq~s--~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E 1707 (2382)
T KOG0890|consen 1632 WKNRLERTQPS--FRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLE 1707 (2382)
T ss_pred HHHHHHHhchh--HHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHH
Confidence 44444444333 4567777777777533 33458999999999999999999999999999987 6788889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Q 043158 161 LLEVLIAIGDEVACLSVAELILRHW 185 (1962)
Q Consensus 161 Lg~aL~~LGdyeeAL~~~~rALeLd 185 (1962)
.|..+...||...|+...+..+.+.
T Consensus 1708 ~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1708 RAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhh
Confidence 9999999999999999999888653
No 384
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=23.73 E-value=3e+02 Score=42.14 Aligned_cols=97 Identities=10% Similarity=-0.001 Sum_probs=51.5
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 043158 89 KNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAI 168 (1962)
Q Consensus 89 kNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~L 168 (1962)
.++=.+|... ++++.....+.. .-.+| .+ ...=......|+++.|..||++++..+|+....+...-.-.+..
T Consensus 1424 fllq~lY~~i--~dpDgV~Gv~~~-r~a~~---sl-~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~ 1496 (2382)
T KOG0890|consen 1424 FLLQNLYGSI--HDPDGVEGVSAR-RFADP---SL-YQQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAI 1496 (2382)
T ss_pred HHHHHHHHhc--CCcchhhhHHHH-hhcCc---cH-HHHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcc
Confidence 3444455555 555555554443 11122 12 22223445566666666666666666666666666555566666
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHH
Q 043158 169 GDEVACLSVAELILRHWPSHSRAL 192 (1962)
Q Consensus 169 GdyeeAL~~~~rALeLdPd~a~Al 192 (1962)
|.+...+.+.+-.....++...-|
T Consensus 1497 ~~l~t~i~~~dg~~~~~se~~~~~ 1520 (2382)
T KOG0890|consen 1497 QHLSTEILHLDGLIINRSEEVDEL 1520 (2382)
T ss_pred cchhHHHhhhcchhhccCHHHHHH
Confidence 666666665555444444444333
No 385
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=23.17 E-value=2.9e+02 Score=38.17 Aligned_cols=112 Identities=17% Similarity=0.100 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 043158 34 TQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQA 113 (1962)
Q Consensus 34 lalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rA 113 (1962)
...-..+-.+.+.+++++|--.|..++..-|.... + ..-.+.|.+.++++.+.|++..++.--.-|
T Consensus 54 ~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~---~-----------~a~~~~~~~s~~m~~~l~~~~~~~~E~~la 119 (748)
T KOG4151|consen 54 LELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHH---V-----------VATLRSNQASCYMQLGLGEYPKAIPECELA 119 (748)
T ss_pred HHHHhhhhHHhhhhhhhccchhhhhhheeccccch---h-----------hhhHHHHHHHHHhhcCccchhhhcCchhhh
Confidence 33444455555666777776666666654221100 0 123456888888888778999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHH
Q 043158 114 VEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCME 159 (1962)
Q Consensus 114 LaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~ 159 (1962)
+...|..--+....+.+|..+++++.|..-+.-....+|.++.+..
T Consensus 120 ~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~e 165 (748)
T KOG4151|consen 120 LESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASE 165 (748)
T ss_pred hhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHH
Confidence 9999999999999999999999999999998888889999977765
No 386
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=23.05 E-value=7e+02 Score=30.21 Aligned_cols=137 Identities=10% Similarity=0.068 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 043158 34 TQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQA 113 (1962)
Q Consensus 34 lalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rA 113 (1962)
.-+|+-|..+.+.|++.-|.++-.-+++.- ..... . ..-....+++.++..... .-.+=.....+|
T Consensus 11 dLL~~Ga~~ll~~~Q~~sg~DL~~lliev~--~~~~~-~----------~~~~~~~rl~~l~~~~~~-~~p~r~~fi~~a 76 (260)
T PF04190_consen 11 DLLYSGALILLKHGQYGSGADLALLLIEVY--EKSED-P----------VDEESIARLIELISLFPP-EEPERKKFIKAA 76 (260)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHH--HHTT--------------SHHHHHHHHHHHHHS-T-T-TTHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCcchHHHHHHHHHHHH--HHcCC-C----------CCHHHHHHHHHHHHhCCC-CcchHHHHHHHH
Confidence 456777788888999998888766555420 00000 0 001223466666665521 111122233333
Q ss_pred HHh------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHH----------------HhcCCCCHHHHHHHH-HHHHHcCC
Q 043158 114 VEI------DTKDSVVWNQLGTLACSMGLLSISRWAFEQG----------------LLCSPNNWNCMEKLL-EVLIAIGD 170 (1962)
Q Consensus 114 LaL------DP~DaeaW~nLG~al~~LGr~eeAr~alErA----------------LeLdPd~~~Al~nLg-~aL~~LGd 170 (1962)
+.- .-.||+++..+|..+.+-|++.+|+.+|-.+ -+..|...+.+...+ ..+..+|+
T Consensus 77 i~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n 156 (260)
T PF04190_consen 77 IKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGN 156 (260)
T ss_dssp HHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTB
T ss_pred HHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcC
Confidence 332 3368999999999999999999999887432 123355555444444 23445577
Q ss_pred HHHHHHHHHHHHHh
Q 043158 171 EVACLSVAELILRH 184 (1962)
Q Consensus 171 yeeAL~~~~rALeL 184 (1962)
...|...+..-++.
T Consensus 157 ~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 157 LRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77776655444433
No 387
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.46 E-value=4e+02 Score=37.98 Aligned_cols=93 Identities=15% Similarity=0.146 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 043158 85 FLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEV 164 (1962)
Q Consensus 85 ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~a 164 (1962)
.+-|--|+..+..+ |+|..|+++-++| +....|-..+-++...+.|+.|--|=-..+ -|++-+..|...
T Consensus 1220 vSN~a~La~TLV~L--geyQ~AVD~aRKA-----ns~ktWK~VcfaCvd~~EFrlAQiCGL~ii----vhadeLeeli~~ 1288 (1666)
T KOG0985|consen 1220 VSNFAKLASTLVYL--GEYQGAVDAARKA-----NSTKTWKEVCFACVDKEEFRLAQICGLNII----VHADELEELIEY 1288 (1666)
T ss_pred hhhHHHHHHHHHHH--HHHHHHHHHhhhc-----cchhHHHHHHHHHhchhhhhHHHhcCceEE----EehHhHHHHHHH
Confidence 35566788888888 8999999998887 778899999999999999999987754433 467778899999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCC
Q 043158 165 LIAIGDEVACLSVAELILRHWPSH 188 (1962)
Q Consensus 165 L~~LGdyeeAL~~~~rALeLdPd~ 188 (1962)
+...|-+++.+..++.+|.+.--|
T Consensus 1289 Yq~rGyFeElIsl~Ea~LGLERAH 1312 (1666)
T KOG0985|consen 1289 YQDRGYFEELISLLEAGLGLERAH 1312 (1666)
T ss_pred HHhcCcHHHHHHHHHhhhchhHHH
Confidence 999999999999999999986433
No 388
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=21.63 E-value=1.9e+02 Score=32.82 Aligned_cols=49 Identities=12% Similarity=0.079 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 043158 103 YESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSP 152 (1962)
Q Consensus 103 ~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdP 152 (1962)
.+..++..++.+...| ++.++.+++.++...|+.++|....+++..+-|
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4455555566666666 566666777777777777777666666666666
No 389
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=21.33 E-value=1.2e+02 Score=29.95 Aligned_cols=32 Identities=13% Similarity=0.213 Sum_probs=28.7
Q ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC
Q 043158 31 SHLTQTYHEGLLKLQSKEYDKAQELLESVLKD 62 (1962)
Q Consensus 31 eeAlalYqkAL~L~qqGRfeEA~eaY~raLa~ 62 (1962)
+.|..+.++|...-..|++++|..+|.+++..
T Consensus 4 ~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 4 QKAIELVKKAIEEDNAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999873
No 390
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=21.30 E-value=1.2e+02 Score=29.62 Aligned_cols=32 Identities=19% Similarity=0.288 Sum_probs=28.7
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLK 61 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa 61 (1962)
.+.|..+..+|+..-..|++++|+.+|.++++
T Consensus 5 ~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 5 LSKAKELISKALKADEAGDYEEALELYKKAIE 36 (77)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45678889999999999999999999999987
No 391
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=21.18 E-value=3.9e+02 Score=34.62 Aligned_cols=68 Identities=18% Similarity=0.121 Sum_probs=54.2
Q ss_pred hhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH-------HHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 043158 80 LLQLRFLALKNLATVFLQQGSSHYESALRCYLQA-------VEI-DTKDSVVWNQLGTLACSMGLLSISRWAFEQGLL 149 (1962)
Q Consensus 80 lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rA-------LaL-DP~DaeaW~nLG~al~~LGr~eeAr~alErALe 149 (1962)
.-++.|-+...|..+..-. |+|..|+....-. ... -+.+..++|.+|-+++-++||.+|+.+|...|-
T Consensus 117 ~~~LGYFSligLlRvh~LL--GDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 117 YKMLGYFSLIGLLRVHCLL--GDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHhhHHHHHHHHHHHHhc--cCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777888888888888 9999999986521 122 234678999999999999999999999998874
No 392
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=20.84 E-value=1.3e+02 Score=31.89 Aligned_cols=84 Identities=24% Similarity=0.308 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhhhhccccccCCCCCCcHHHHHHHHHHHHhhcCcchhccCCCCCCCcccchhhHhhHHHHHHHHHhhccc
Q 043158 1593 ALGRYIRALLSSMHHSGITYSSAGSSSELVLEKIFALFMEQGNLWPEICGAPEIMSPEISESSLYGYLHEHIVSLESKVK 1672 (1962)
Q Consensus 1593 A~~l~i~~l~~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1672 (1962)
.+..|.+++...+.+++.-. .+.-.|.+|=+||-++.+..-|..-|+..++.-+...+.+.-- ....-
T Consensus 30 ~l~~y~rsa~~l~~~A~~~~------~egd~E~AYvl~~R~~~L~~ki~~Hpdy~~~~~~~~~~~~~~~------~~~~i 97 (115)
T PF08969_consen 30 PLKRYLRSANKLLREAEEYR------QEGDEEQAYVLYMRYLTLVEKIPKHPDYKKDKNSYKKLLGKKK------LNEVI 97 (115)
T ss_dssp -HHHHHHHHHHHHHHHHHHH------HCT-HHHHHHHHHHHHHHHCCHCCSCCCCCTHHCCHHHHHHHH------HHHCH
T ss_pred CHHHHHHHHHHHHHHHHHHH------HCCCHHHHHHHHHHHHHHHHHhhcCccccccchHHHHHHHHHH------HHHHH
Confidence 44445555555555544221 1245899999999999999888899999988777766433211 11223
Q ss_pred hhhHHHHHHHHHhhhC
Q 043158 1673 LETLEAINEKIRKRFK 1688 (1962)
Q Consensus 1673 ~~~~~~~~~~~~~~~~ 1688 (1962)
++.+|.+...|.+|..
T Consensus 98 l~~lE~Lk~~L~~rY~ 113 (115)
T PF08969_consen 98 LEELEKLKPSLKERYE 113 (115)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 6889999999999874
No 393
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=20.39 E-value=24 Score=39.41 Aligned_cols=31 Identities=29% Similarity=0.502 Sum_probs=26.8
Q ss_pred HHhhhhcc-CCCChHHHHHHHHHHhHHhhhhh
Q 043158 1197 LFKFDLLY-NPLRFESWQRLANIYDEEVDLLL 1227 (1962)
Q Consensus 1197 llk~DL~y-np~RfESW~~Lg~~yd~~vdd~L 1227 (1962)
|.+|||.| +--+||+||+=+..|+.....-|
T Consensus 1 MI~y~L~C~~gH~FEgWF~ss~~fd~Q~~~gl 32 (148)
T PF06676_consen 1 MIVYDLRCENGHEFEGWFRSSAAFDRQQARGL 32 (148)
T ss_pred CeeEEEecCCCCccceecCCHHHHHHHHHcCC
Confidence 46799999 88899999999999999876655
No 394
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=20.34 E-value=5.3e+02 Score=30.77 Aligned_cols=77 Identities=14% Similarity=0.055 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--CC----HHHHHHHHHHHHHcCCHHHHHH
Q 043158 103 YESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSP--NN----WNCMEKLLEVLIAIGDEVACLS 176 (1962)
Q Consensus 103 ~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdP--d~----~~Al~nLg~aL~~LGdyeeAL~ 176 (1962)
+..|++.|.+.-. .---..+-..+|..+...|+++.|+..|+.+...-- .- ...+..+..+...+|+.+..+.
T Consensus 161 L~~A~~~f~~~~~-~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~ 239 (247)
T PF11817_consen 161 LEKAYEQFKKYGQ-NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLT 239 (247)
T ss_pred HHHHHHHHHHhcc-chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 5555555553322 111245667899999999999999999999965321 11 3445777788889999988887
Q ss_pred HHHH
Q 043158 177 VAEL 180 (1962)
Q Consensus 177 ~~~r 180 (1962)
..-+
T Consensus 240 ~~le 243 (247)
T PF11817_consen 240 TSLE 243 (247)
T ss_pred HHHH
Confidence 6533
Done!