Query 043158
Match_columns 1962
No_of_seqs 369 out of 1252
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 23:46:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043158.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043158hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pl2_A Hypothetical conserved 99.7 9.8E-17 3.4E-21 174.7 20.5 189 30-270 2-202 (217)
2 4gyw_A UDP-N-acetylglucosamine 99.7 7.6E-17 2.6E-21 207.8 21.1 152 29-200 5-156 (723)
3 2h6f_A Protein farnesyltransfe 99.7 1.8E-16 6.3E-21 189.9 17.8 151 30-200 94-245 (382)
4 4ga2_A E3 SUMO-protein ligase 99.7 1E-16 3.5E-21 165.8 12.1 141 40-200 4-145 (150)
5 4gco_A Protein STI-1; structur 99.7 2E-15 6.8E-20 152.5 17.4 112 85-198 13-124 (126)
6 2pl2_A Hypothetical conserved 99.7 2.6E-15 8.9E-20 163.5 19.4 152 30-200 36-196 (217)
7 2h6f_A Protein farnesyltransfe 99.6 2.5E-15 8.7E-20 180.1 20.1 217 30-271 128-371 (382)
8 3vtx_A MAMA; tetratricopeptide 99.6 1.3E-14 4.6E-19 150.9 20.9 150 31-200 3-152 (184)
9 4i17_A Hypothetical protein; T 99.6 8.7E-15 3E-19 157.7 18.4 151 30-199 4-163 (228)
10 3gyz_A Chaperone protein IPGC; 99.6 5.2E-15 1.8E-19 155.8 15.2 104 84-189 35-138 (151)
11 3urz_A Uncharacterized protein 99.6 1.3E-14 4.3E-19 157.1 17.9 134 32-169 3-136 (208)
12 3vtx_A MAMA; tetratricopeptide 99.6 1.7E-14 5.7E-19 150.2 18.0 140 30-189 36-175 (184)
13 1w3b_A UDP-N-acetylglucosamine 99.6 7E-14 2.4E-18 161.9 23.1 227 30-266 132-386 (388)
14 1w3b_A UDP-N-acetylglucosamine 99.6 8.3E-14 2.9E-18 161.2 22.3 177 85-268 101-286 (388)
15 4i17_A Hypothetical protein; T 99.6 6.1E-14 2.1E-18 151.2 19.4 150 31-200 40-225 (228)
16 4gco_A Protein STI-1; structur 99.6 2.5E-14 8.7E-19 144.5 15.1 116 30-165 10-125 (126)
17 4gyw_A UDP-N-acetylglucosamine 99.6 1.2E-14 4E-19 187.6 15.3 145 22-189 35-179 (723)
18 1hh8_A P67PHOX, NCF-2, neutrop 99.6 1.5E-13 5.2E-18 145.5 20.6 142 31-195 4-161 (213)
19 4abn_A Tetratricopeptide repea 99.5 2.9E-14 9.9E-19 174.0 16.6 151 29-200 98-269 (474)
20 2vgx_A Chaperone SYCD; alterna 99.5 2.9E-14 1E-18 147.6 14.1 110 85-196 21-130 (148)
21 4eqf_A PEX5-related protein; a 99.5 1.4E-13 4.7E-18 157.8 19.7 96 103-198 193-290 (365)
22 4eqf_A PEX5-related protein; a 99.5 2.5E-13 8.7E-18 155.5 20.3 211 32-270 64-298 (365)
23 2pzi_A Probable serine/threoni 99.5 2.6E-14 9E-19 182.3 12.2 149 30-199 430-578 (681)
24 3upv_A Heat shock protein STI1 99.5 2.6E-13 8.8E-18 133.7 16.1 113 85-199 4-122 (126)
25 3qky_A Outer membrane assembly 99.5 5E-13 1.7E-17 147.6 19.3 153 30-199 12-195 (261)
26 4abn_A Tetratricopeptide repea 99.5 1.7E-13 5.8E-18 167.3 17.0 151 30-199 134-302 (474)
27 3uq3_A Heat shock protein STI1 99.5 3.4E-13 1.2E-17 144.5 17.4 147 31-198 3-182 (258)
28 1fch_A Peroxisomal targeting s 99.5 1.6E-12 5.6E-17 147.7 23.5 147 33-199 64-261 (368)
29 3u4t_A TPR repeat-containing p 99.5 5.7E-13 2E-17 145.4 18.7 150 34-200 38-187 (272)
30 2xcb_A PCRH, regulatory protei 99.5 3E-13 1E-17 137.3 15.3 112 85-198 18-129 (142)
31 3as5_A MAMA; tetratricopeptide 99.5 1.3E-12 4.3E-17 132.4 19.8 150 31-200 6-155 (186)
32 3ieg_A DNAJ homolog subfamily 99.5 1.3E-12 4.3E-17 146.2 21.3 149 32-200 2-165 (359)
33 3sz7_A HSC70 cochaperone (SGT) 99.5 3.6E-13 1.2E-17 139.1 15.6 112 84-197 10-121 (164)
34 2pzi_A Probable serine/threoni 99.5 1.3E-13 4.3E-18 176.0 14.8 179 32-265 393-580 (681)
35 4gcn_A Protein STI-1; structur 99.5 2.4E-13 8.2E-18 137.0 13.5 102 85-188 8-116 (127)
36 3hym_B Cell division cycle pro 99.5 2.2E-12 7.5E-17 143.3 22.2 134 32-185 89-223 (330)
37 2q7f_A YRRB protein; TPR, prot 99.5 1.9E-12 6.3E-17 138.3 20.8 111 86-198 92-202 (243)
38 2q7f_A YRRB protein; TPR, prot 99.5 1E-12 3.5E-17 140.2 18.7 183 16-200 40-238 (243)
39 2vsy_A XCC0866; transferase, g 99.5 8.5E-13 2.9E-17 163.0 19.9 147 30-196 20-169 (568)
40 1hxi_A PEX5, peroxisome target 99.5 2.7E-13 9.1E-18 135.8 12.5 103 86-190 18-120 (121)
41 3gyz_A Chaperone protein IPGC; 99.5 3.2E-13 1.1E-17 142.1 13.6 107 29-155 32-138 (151)
42 3u4t_A TPR repeat-containing p 99.5 5.2E-13 1.8E-17 145.7 15.7 146 34-200 4-154 (272)
43 2vq2_A PILW, putative fimbrial 99.5 2.5E-12 8.4E-17 135.0 20.2 150 30-199 5-157 (225)
44 2fo7_A Synthetic consensus TPR 99.5 1.9E-12 6.4E-17 123.8 17.6 134 34-187 2-135 (136)
45 2hr2_A Hypothetical protein; a 99.5 2E-13 6.8E-18 146.6 12.0 103 85-189 11-136 (159)
46 3uq3_A Heat shock protein STI1 99.5 2.2E-12 7.4E-17 138.3 19.9 163 33-197 79-255 (258)
47 3qou_A Protein YBBN; thioredox 99.4 5.2E-13 1.8E-17 152.1 15.2 151 30-200 114-266 (287)
48 3as5_A MAMA; tetratricopeptide 99.4 2.2E-12 7.4E-17 130.7 17.7 142 30-191 39-180 (186)
49 2ho1_A Type 4 fimbrial biogene 99.4 2.3E-12 7.7E-17 139.4 18.0 151 30-200 33-186 (252)
50 2e2e_A Formate-dependent nitri 99.4 5E-13 1.7E-17 138.8 12.1 136 43-198 20-158 (177)
51 4ga2_A E3 SUMO-protein ligase 99.4 6.7E-13 2.3E-17 137.2 12.9 121 30-170 28-149 (150)
52 2y4t_A DNAJ homolog subfamily 99.4 4.8E-12 1.6E-16 148.2 21.6 152 29-200 22-188 (450)
53 3hym_B Cell division cycle pro 99.4 2.6E-12 8.9E-17 142.7 17.8 168 30-199 122-314 (330)
54 1elw_A TPR1-domain of HOP; HOP 99.4 4.8E-12 1.6E-16 119.4 16.9 113 85-199 4-116 (118)
55 1xnf_A Lipoprotein NLPI; TPR, 99.4 4.1E-12 1.4E-16 138.2 18.4 133 45-193 17-149 (275)
56 3rkv_A Putative peptidylprolyl 99.4 1.3E-12 4.6E-17 134.6 13.9 109 85-195 11-138 (162)
57 1fch_A Peroxisomal targeting s 99.4 6.8E-12 2.3E-16 142.6 20.7 102 85-188 217-318 (368)
58 2r5s_A Uncharacterized protein 99.4 7.5E-13 2.6E-17 138.8 11.5 146 34-200 7-155 (176)
59 3mkr_A Coatomer subunit epsilo 99.4 4.8E-12 1.6E-16 145.1 19.1 144 30-198 98-243 (291)
60 2ho1_A Type 4 fimbrial biogene 99.4 1.9E-11 6.5E-16 132.2 22.4 149 30-198 68-218 (252)
61 3urz_A Uncharacterized protein 99.4 2.3E-12 7.7E-17 139.5 15.0 111 86-198 5-131 (208)
62 3qky_A Outer membrane assembly 99.4 3.2E-12 1.1E-16 141.1 16.4 145 33-194 52-234 (261)
63 1p5q_A FKBP52, FK506-binding p 99.4 2.9E-12 9.8E-17 149.8 16.5 156 20-184 137-294 (336)
64 2yhc_A BAMD, UPF0169 lipoprote 99.4 5.2E-12 1.8E-16 137.8 17.5 150 33-199 4-194 (225)
65 3upv_A Heat shock protein STI1 99.4 3.9E-12 1.3E-16 125.3 14.9 118 31-168 2-125 (126)
66 2lni_A Stress-induced-phosphop 99.4 3.8E-12 1.3E-16 123.3 14.4 114 84-199 15-128 (133)
67 1a17_A Serine/threonine protei 99.4 7.4E-12 2.5E-16 126.2 17.0 135 30-184 10-146 (166)
68 3q49_B STIP1 homology and U bo 99.4 4.7E-12 1.6E-16 124.9 14.9 101 85-187 9-109 (137)
69 1xnf_A Lipoprotein NLPI; TPR, 99.4 1E-11 3.5E-16 135.1 19.0 137 30-187 40-176 (275)
70 3fp2_A TPR repeat-containing p 99.4 7.1E-12 2.4E-16 149.8 19.3 146 32-198 242-387 (537)
71 2vyi_A SGTA protein; chaperone 99.4 1.7E-11 5.9E-16 117.4 17.4 114 84-199 11-124 (131)
72 3mkr_A Coatomer subunit epsilo 99.4 1.3E-11 4.5E-16 141.5 19.7 148 30-195 127-275 (291)
73 3cv0_A Peroxisome targeting si 99.4 2.5E-11 8.7E-16 134.6 21.4 112 85-198 172-295 (327)
74 2xcb_A PCRH, regulatory protei 99.3 4.3E-12 1.5E-16 128.8 12.7 122 21-165 9-130 (142)
75 2vsy_A XCC0866; transferase, g 99.3 6.8E-12 2.3E-16 155.0 16.9 135 46-200 2-136 (568)
76 3ieg_A DNAJ homolog subfamily 99.3 2E-11 6.9E-16 136.5 19.0 148 30-197 34-196 (359)
77 3cv0_A Peroxisome targeting si 99.3 6.1E-11 2.1E-15 131.5 22.6 98 101-198 152-249 (327)
78 2vq2_A PILW, putative fimbrial 99.3 5.4E-11 1.9E-15 124.8 20.5 150 30-198 39-191 (225)
79 2fbn_A 70 kDa peptidylprolyl i 99.3 1.3E-11 4.6E-16 131.2 15.8 157 18-183 26-185 (198)
80 3sz7_A HSC70 cochaperone (SGT) 99.3 1.1E-11 3.6E-16 128.1 14.6 115 30-164 8-122 (164)
81 2dba_A Smooth muscle cell asso 99.3 1.9E-11 6.4E-16 121.0 15.7 115 84-200 27-144 (148)
82 2vgx_A Chaperone SYCD; alterna 99.3 8.8E-12 3E-16 129.0 13.7 110 30-159 18-127 (148)
83 2hr2_A Hypothetical protein; a 99.3 2.1E-12 7.1E-17 138.7 9.2 128 30-165 8-146 (159)
84 1na0_A Designed protein CTPR3; 99.3 4.5E-11 1.5E-15 113.6 17.5 113 85-199 9-121 (125)
85 1a17_A Serine/threonine protei 99.3 3.1E-11 1.1E-15 121.7 17.3 112 84-197 12-123 (166)
86 2vyi_A SGTA protein; chaperone 99.3 2E-11 6.7E-16 117.0 15.1 122 30-171 9-130 (131)
87 2lni_A Stress-induced-phosphop 99.3 1.7E-11 6E-16 118.7 14.7 121 30-170 13-133 (133)
88 1p5q_A FKBP52, FK506-binding p 99.3 1.7E-11 5.8E-16 143.3 17.3 115 84-200 146-275 (336)
89 2xpi_A Anaphase-promoting comp 99.3 3.1E-11 1.1E-15 146.9 20.1 167 30-198 370-559 (597)
90 3rkv_A Putative peptidylprolyl 99.3 8E-12 2.7E-16 128.8 12.7 138 30-171 8-148 (162)
91 1qqe_A Vesicular transport pro 99.3 1E-11 3.5E-16 141.2 14.6 145 33-191 77-235 (292)
92 2xev_A YBGF; tetratricopeptide 99.3 2.6E-11 8.9E-16 118.4 15.5 111 87-199 4-120 (129)
93 2y4t_A DNAJ homolog subfamily 99.3 5.4E-11 1.9E-15 139.3 20.8 159 31-198 209-372 (450)
94 1qqe_A Vesicular transport pro 99.3 1.3E-11 4.4E-16 140.3 14.8 147 30-190 33-193 (292)
95 1zu2_A Mitochondrial import re 99.3 4E-12 1.4E-16 136.4 9.9 99 101-199 16-135 (158)
96 2xpi_A Anaphase-promoting comp 99.3 3.6E-11 1.2E-15 146.4 19.6 169 30-200 404-595 (597)
97 2if4_A ATFKBP42; FKBP-like, al 99.3 3.6E-12 1.2E-16 149.3 9.9 164 20-189 169-333 (338)
98 2fbn_A 70 kDa peptidylprolyl i 99.3 3.6E-11 1.2E-15 127.9 16.7 114 84-199 37-166 (198)
99 3fp2_A TPR repeat-containing p 99.3 8.1E-11 2.8E-15 140.7 21.6 210 30-268 22-359 (537)
100 3qou_A Protein YBBN; thioredox 99.3 1.8E-11 6.3E-16 139.4 14.2 135 30-184 148-284 (287)
101 2kck_A TPR repeat; tetratricop 99.3 1.6E-11 5.4E-16 115.2 11.0 102 86-189 7-111 (112)
102 2r5s_A Uncharacterized protein 99.3 2.2E-11 7.6E-16 127.6 13.2 138 22-183 32-172 (176)
103 2ond_A Cleavage stimulation fa 99.3 8.5E-11 2.9E-15 134.1 18.9 151 30-200 47-214 (308)
104 1kt0_A FKBP51, 51 kDa FK506-bi 99.3 3.7E-11 1.3E-15 146.4 16.3 150 20-177 258-407 (457)
105 4g1t_A Interferon-induced prot 99.3 8.7E-11 3E-15 139.0 18.7 154 33-198 51-218 (472)
106 2gw1_A Mitochondrial precursor 99.2 3.1E-11 1.1E-15 142.8 14.6 150 30-200 234-383 (514)
107 1elw_A TPR1-domain of HOP; HOP 99.2 1.3E-10 4.5E-15 109.5 15.9 115 31-165 2-116 (118)
108 1hxi_A PEX5, peroxisome target 99.2 2.5E-11 8.5E-16 121.5 11.4 102 35-156 19-120 (121)
109 4g1t_A Interferon-induced prot 99.2 8.4E-11 2.9E-15 139.2 17.8 160 31-200 92-258 (472)
110 1elr_A TPR2A-domain of HOP; HO 99.2 8.8E-11 3E-15 112.8 14.7 111 85-198 4-121 (131)
111 1wao_1 Serine/threonine protei 99.2 1.7E-12 5.8E-17 159.4 3.5 130 30-179 3-134 (477)
112 3k9i_A BH0479 protein; putativ 99.2 8.3E-12 2.9E-16 122.7 7.6 98 101-198 4-104 (117)
113 1kt0_A FKBP51, 51 kDa FK506-bi 99.2 4.6E-11 1.6E-15 145.6 15.5 114 84-199 267-395 (457)
114 2dba_A Smooth muscle cell asso 99.2 1.3E-10 4.3E-15 115.0 15.7 121 30-167 25-145 (148)
115 2c2l_A CHIP, carboxy terminus 99.2 8.7E-12 3E-16 141.9 7.9 105 31-155 2-106 (281)
116 1na0_A Designed protein CTPR3; 99.2 2.5E-10 8.7E-15 108.4 16.5 117 33-169 9-125 (125)
117 2ond_A Cleavage stimulation fa 99.2 2.3E-10 7.9E-15 130.6 18.7 149 30-198 96-250 (308)
118 2yhc_A BAMD, UPF0169 lipoprote 99.2 1.6E-10 5.5E-15 126.0 16.4 142 33-189 41-218 (225)
119 3q49_B STIP1 homology and U bo 99.2 1.1E-10 3.7E-15 115.2 13.3 119 30-168 6-129 (137)
120 2fo7_A Synthetic consensus TPR 99.2 3.4E-10 1.2E-14 108.1 16.4 113 86-200 2-114 (136)
121 3edt_B KLC 2, kinesin light ch 99.2 9.4E-11 3.2E-15 126.7 13.9 144 30-185 40-199 (283)
122 1dce_A Protein (RAB geranylger 99.2 1.8E-10 6E-15 145.1 18.4 198 35-270 30-243 (567)
123 1ihg_A Cyclophilin 40; ppiase 99.2 1.3E-10 4.5E-15 138.4 15.8 143 30-176 220-362 (370)
124 1ouv_A Conserved hypothetical 99.2 9.7E-10 3.3E-14 121.6 21.6 143 30-200 3-157 (273)
125 2gw1_A Mitochondrial precursor 99.2 9.7E-11 3.3E-15 138.7 14.4 111 86-198 339-458 (514)
126 4gcn_A Protein STI-1; structur 99.2 1.4E-10 4.8E-15 116.9 13.4 112 30-162 5-123 (127)
127 1dce_A Protein (RAB geranylger 99.2 1.8E-10 6.2E-15 145.0 16.5 151 30-200 60-237 (567)
128 2c2l_A CHIP, carboxy terminus 99.2 1.1E-10 3.9E-15 132.6 13.2 102 85-188 4-105 (281)
129 1ihg_A Cyclophilin 40; ppiase 99.2 1.8E-10 6.2E-15 137.3 14.9 113 84-198 222-350 (370)
130 3nf1_A KLC 1, kinesin light ch 99.1 2.2E-10 7.5E-15 126.2 13.6 157 30-198 24-204 (311)
131 2xev_A YBGF; tetratricopeptide 99.1 8.4E-10 2.9E-14 107.7 16.0 116 35-167 4-122 (129)
132 3nf1_A KLC 1, kinesin light ch 99.1 2.6E-10 8.9E-15 125.6 12.1 146 30-187 108-310 (311)
133 1ouv_A Conserved hypothetical 99.1 4.1E-09 1.4E-13 116.6 21.7 143 30-200 35-193 (273)
134 3edt_B KLC 2, kinesin light ch 99.1 3.2E-10 1.1E-14 122.5 12.5 144 30-185 82-282 (283)
135 3dra_A Protein farnesyltransfe 99.1 1.2E-09 4.2E-14 128.0 18.3 117 84-200 102-231 (306)
136 2if4_A ATFKBP42; FKBP-like, al 99.1 9E-11 3.1E-15 137.5 8.6 113 84-198 178-307 (338)
137 3rjv_A Putative SEL1 repeat pr 99.1 9.4E-10 3.2E-14 119.8 15.7 146 30-200 15-173 (212)
138 3ulq_A Response regulator aspa 99.1 5.7E-10 1.9E-14 130.0 14.8 149 36-198 106-273 (383)
139 3dra_A Protein farnesyltransfe 99.1 2.3E-09 7.9E-14 125.7 19.7 189 35-268 34-235 (306)
140 3ro3_A PINS homolog, G-protein 99.1 1E-09 3.5E-14 108.2 13.7 143 31-187 7-161 (164)
141 1wao_1 Serine/threonine protei 99.1 1.4E-10 4.7E-15 142.5 9.2 111 86-198 7-117 (477)
142 1hh8_A P67PHOX, NCF-2, neutrop 99.1 1.1E-09 3.7E-14 116.0 14.8 100 85-189 6-105 (213)
143 1elr_A TPR2A-domain of HOP; HO 99.1 8.7E-10 3E-14 105.8 12.5 118 31-169 2-126 (131)
144 3k9i_A BH0479 protein; putativ 99.1 2.7E-10 9.3E-15 111.9 9.2 99 45-160 2-100 (117)
145 2l6j_A TPR repeat-containing p 99.1 3E-10 1E-14 107.8 8.8 92 85-178 4-101 (111)
146 3ulq_A Response regulator aspa 99.0 8E-10 2.7E-14 128.8 13.8 142 31-185 141-294 (383)
147 1zu2_A Mitochondrial import re 99.0 2.6E-10 8.9E-15 122.4 8.3 92 45-156 14-126 (158)
148 2qfc_A PLCR protein; TPR, HTH, 99.0 3.9E-09 1.3E-13 119.4 17.7 155 31-199 73-246 (293)
149 2ifu_A Gamma-SNAP; membrane fu 99.0 8.4E-10 2.9E-14 126.3 12.1 144 30-188 32-188 (307)
150 2kat_A Uncharacterized protein 99.0 7.6E-10 2.6E-14 107.7 10.0 85 104-188 2-86 (115)
151 3dss_A Geranylgeranyl transfer 99.0 4.1E-09 1.4E-13 125.1 17.8 164 19-200 50-239 (331)
152 2ifu_A Gamma-SNAP; membrane fu 99.0 7.5E-10 2.6E-14 126.7 11.1 142 33-190 76-229 (307)
153 1na3_A Designed protein CTPR2; 99.0 2.9E-09 9.9E-14 97.6 12.7 83 85-169 9-91 (91)
154 2kck_A TPR repeat; tetratricop 99.0 1E-09 3.5E-14 102.8 9.8 106 30-155 3-111 (112)
155 2qfc_A PLCR protein; TPR, HTH, 99.0 4.4E-09 1.5E-13 119.0 16.9 136 36-185 118-267 (293)
156 3u3w_A Transcriptional activat 99.0 2.5E-09 8.7E-14 120.9 14.8 153 34-200 76-247 (293)
157 4a1s_A PINS, partner of inscut 99.0 8E-10 2.8E-14 128.1 10.7 140 30-185 45-213 (411)
158 4f3v_A ESX-1 secretion system 99.0 2.9E-09 9.8E-14 123.9 15.2 138 36-195 105-247 (282)
159 3gw4_A Uncharacterized protein 99.0 2.9E-09 1E-13 111.0 13.4 141 31-185 24-177 (203)
160 3q15_A PSP28, response regulat 99.0 2.9E-09 9.9E-14 124.3 14.5 154 32-187 100-293 (378)
161 3sf4_A G-protein-signaling mod 99.0 1.1E-09 3.7E-14 125.3 10.6 139 30-184 6-176 (406)
162 3q7a_A Farnesyltransferase alp 99.0 6.1E-09 2.1E-13 124.4 17.1 112 85-197 123-250 (349)
163 3u3w_A Transcriptional activat 99.0 3.2E-09 1.1E-13 120.1 13.4 133 39-185 121-267 (293)
164 2e2e_A Formate-dependent nitri 98.9 1.7E-09 5.7E-14 112.3 10.0 100 101-200 24-126 (177)
165 3q15_A PSP28, response regulat 98.9 3.9E-09 1.3E-13 123.3 13.9 115 84-200 140-272 (378)
166 3dss_A Geranylgeranyl transfer 98.9 1.5E-08 5.2E-13 120.2 18.9 141 39-199 35-189 (331)
167 3ro2_A PINS homolog, G-protein 98.9 2.4E-09 8.3E-14 117.7 11.0 137 32-184 4-172 (338)
168 3sf4_A G-protein-signaling mod 98.9 3.3E-09 1.1E-13 121.3 12.5 152 33-198 187-356 (406)
169 3rjv_A Putative SEL1 repeat pr 98.9 1.5E-08 5E-13 110.4 16.2 143 31-199 48-210 (212)
170 2ooe_A Cleavage stimulation fa 98.9 2.1E-08 7.2E-13 122.7 19.0 150 30-199 269-435 (530)
171 2kc7_A BFR218_protein; tetratr 98.9 1.8E-09 6.2E-14 101.8 7.2 92 88-189 3-95 (99)
172 2ooe_A Cleavage stimulation fa 98.9 2.1E-08 7.2E-13 122.8 18.3 142 30-190 318-460 (530)
173 3ro2_A PINS homolog, G-protein 98.9 7.7E-09 2.6E-13 113.8 12.3 141 33-187 183-335 (338)
174 4a1s_A PINS, partner of inscut 98.9 7.5E-09 2.5E-13 120.0 12.1 144 32-189 222-377 (411)
175 3q7a_A Farnesyltransferase alp 98.8 2.3E-08 7.9E-13 119.4 16.1 181 45-269 66-258 (349)
176 2kat_A Uncharacterized protein 98.8 1.5E-08 5.2E-13 98.4 11.2 101 50-170 2-104 (115)
177 3gw4_A Uncharacterized protein 98.8 2.1E-08 7E-13 104.6 12.7 123 43-185 2-137 (203)
178 3ma5_A Tetratricopeptide repea 98.8 7E-09 2.4E-13 100.1 7.9 73 116-188 2-74 (100)
179 1hz4_A MALT regulatory protein 98.8 5.4E-08 1.8E-12 112.3 16.2 141 33-188 14-168 (373)
180 1na3_A Designed protein CTPR2; 98.7 4.7E-08 1.6E-12 89.5 11.0 83 117-199 4-87 (91)
181 2l6j_A TPR repeat-containing p 98.7 5.4E-08 1.8E-12 92.2 10.9 79 120-198 3-87 (111)
182 2xm6_A Protein corresponding t 98.7 1.6E-07 5.4E-12 113.9 17.3 161 31-198 253-449 (490)
183 3n71_A Histone lysine methyltr 98.7 7.9E-08 2.7E-12 119.4 14.3 139 32-184 308-464 (490)
184 1hz4_A MALT regulatory protein 98.7 1.2E-07 4.2E-12 109.4 14.9 139 33-185 53-204 (373)
185 3ma5_A Tetratricopeptide repea 98.6 7.5E-08 2.6E-12 92.8 9.8 83 85-169 7-91 (100)
186 2xm6_A Protein corresponding t 98.6 1.3E-06 4.5E-11 105.8 21.7 143 30-200 36-194 (490)
187 3ro3_A PINS homolog, G-protein 98.5 1.9E-07 6.6E-12 91.8 8.9 100 84-185 8-119 (164)
188 4f3v_A ESX-1 secretion system 98.5 7.3E-07 2.5E-11 103.8 14.3 113 30-162 133-248 (282)
189 3e4b_A ALGK; tetratricopeptide 98.5 1.2E-06 4.1E-11 106.5 16.7 108 86-200 177-294 (452)
190 3e4b_A ALGK; tetratricopeptide 98.5 8.5E-07 2.9E-11 107.8 14.9 157 34-199 177-364 (452)
191 4b4t_Q 26S proteasome regulato 98.4 1.1E-06 3.9E-11 102.8 14.4 149 33-184 4-164 (434)
192 1klx_A Cysteine rich protein B 98.4 1.3E-06 4.3E-11 89.8 13.0 119 47-195 9-135 (138)
193 1pc2_A Mitochondria fission pr 98.4 1.3E-06 4.5E-11 93.4 11.6 99 102-200 13-116 (152)
194 3bee_A Putative YFRE protein; 98.4 1.5E-06 5E-11 85.0 10.8 82 117-198 2-86 (93)
195 2kc7_A BFR218_protein; tetratr 98.3 1.9E-06 6.5E-11 81.0 9.7 70 124-193 3-73 (99)
196 3ly7_A Transcriptional activat 98.3 1.1E-05 3.9E-10 97.0 18.2 142 32-190 195-345 (372)
197 1xi4_A Clathrin heavy chain; a 98.2 1E-05 3.6E-10 109.4 17.0 157 30-198 1102-1323(1630)
198 3u64_A Protein TP_0956; tetrat 98.1 3.2E-05 1.1E-09 90.5 15.3 87 102-188 178-273 (301)
199 2v5f_A Prolyl 4-hydroxylase su 98.1 1.8E-05 6.2E-10 77.6 10.9 76 85-162 5-87 (104)
200 3mv2_B Coatomer subunit epsilo 98.0 3.9E-05 1.3E-09 90.6 15.2 158 32-194 99-292 (310)
201 3qwp_A SET and MYND domain-con 98.0 3.6E-05 1.2E-09 94.2 15.1 121 33-167 287-425 (429)
202 3qww_A SET and MYND domain-con 98.0 3E-05 1E-09 95.2 14.2 109 35-157 300-423 (433)
203 3qww_A SET and MYND domain-con 98.0 2.2E-05 7.6E-10 96.3 12.9 96 101-196 312-428 (433)
204 3n71_A Histone lysine methyltr 98.0 4.1E-05 1.4E-09 95.4 14.9 102 89-192 313-435 (490)
205 1b89_A Protein (clathrin heavy 98.0 2E-05 7E-10 96.9 11.7 148 36-199 97-251 (449)
206 2v5f_A Prolyl 4-hydroxylase su 98.0 3.9E-05 1.3E-09 75.2 11.4 80 120-199 4-90 (104)
207 4b4t_Q 26S proteasome regulato 98.0 5.7E-05 1.9E-09 88.4 14.8 150 33-184 55-245 (434)
208 3mv2_B Coatomer subunit epsilo 97.9 0.00013 4.6E-09 86.0 16.3 81 52-152 85-167 (310)
209 1xi4_A Clathrin heavy chain; a 97.9 5.7E-05 2E-09 102.5 14.5 111 40-187 1056-1166(1630)
210 3bee_A Putative YFRE protein; 97.8 9.4E-05 3.2E-09 72.2 10.0 70 85-154 6-76 (93)
211 3qwp_A SET and MYND domain-con 97.8 0.00011 3.8E-09 89.9 12.8 88 95-184 297-400 (429)
212 1klx_A Cysteine rich protein B 97.7 0.00021 7.1E-09 73.3 12.2 99 39-163 31-137 (138)
213 1pc2_A Mitochondria fission pr 97.5 0.00036 1.2E-08 74.8 10.8 94 49-162 14-112 (152)
214 1nzn_A CGI-135 protein, fissio 97.5 0.00056 1.9E-08 71.2 11.6 99 102-200 16-119 (126)
215 3ly7_A Transcriptional activat 97.4 0.00072 2.5E-08 81.6 12.7 98 101-199 213-320 (372)
216 1b89_A Protein (clathrin heavy 97.1 0.00072 2.4E-08 83.4 8.6 119 39-186 154-274 (449)
217 4e6h_A MRNA 3'-END-processing 97.1 0.0036 1.2E-07 81.0 14.8 135 44-197 445-583 (679)
218 3u64_A Protein TP_0956; tetrat 96.9 0.0023 7.8E-08 75.1 9.6 69 85-154 199-273 (301)
219 4e6h_A MRNA 3'-END-processing 96.7 0.01 3.5E-07 76.8 15.2 100 86-187 435-536 (679)
220 1y8m_A FIS1; mitochondria, unk 96.1 0.062 2.1E-06 57.2 13.6 84 117-200 35-122 (144)
221 3ffl_A Anaphase-promoting comp 95.9 0.043 1.5E-06 59.6 11.6 72 35-117 22-93 (167)
222 2uy1_A Cleavage stimulation fa 95.7 0.19 6.6E-06 62.3 17.8 167 24-193 5-250 (493)
223 3o48_A Mitochondria fission 1 95.5 0.064 2.2E-06 56.4 10.6 84 117-200 36-123 (134)
224 2uy1_A Cleavage stimulation fa 95.4 0.17 5.9E-06 62.8 15.9 142 36-181 216-380 (493)
225 2ff4_A Probable regulatory pro 94.3 0.44 1.5E-05 57.5 15.3 110 34-148 116-232 (388)
226 1ya0_A SMG-7 transcript varian 94.2 0.14 4.9E-06 64.1 11.1 80 86-167 153-232 (497)
227 1nzn_A CGI-135 protein, fissio 93.8 0.12 4.2E-06 53.8 7.8 74 86-161 36-114 (126)
228 4h7y_A Dual specificity protei 93.4 0.41 1.4E-05 51.6 11.0 104 84-190 12-129 (161)
229 2ff4_A Probable regulatory pro 93.1 0.7 2.4E-05 55.8 14.1 97 84-182 114-232 (388)
230 3ffl_A Anaphase-promoting comp 93.1 0.24 8.3E-06 53.9 8.9 91 87-179 22-146 (167)
231 3mkq_A Coatomer beta'-subunit; 92.7 0.53 1.8E-05 59.8 12.9 85 85-179 681-773 (814)
232 3o48_A Mitochondria fission 1 92.2 0.64 2.2E-05 49.0 10.3 76 86-161 41-118 (134)
233 4g26_A Pentatricopeptide repea 91.1 2.6 9E-05 52.5 16.2 121 48-188 85-210 (501)
234 1y8m_A FIS1; mitochondria, unk 91.0 1.2 4.2E-05 47.4 11.0 74 86-159 40-115 (144)
235 4h7y_A Dual specificity protei 90.3 3.3 0.00011 44.8 13.5 113 32-158 12-131 (161)
236 4g26_A Pentatricopeptide repea 89.3 4.9 0.00017 50.1 16.4 132 35-184 27-169 (501)
237 1ya0_A SMG-7 transcript varian 88.8 1.2 3.9E-05 56.1 10.3 78 123-200 154-231 (497)
238 4gns_B Protein CSD3, chitin bi 87.0 2.3 7.8E-05 56.0 11.7 58 121-178 337-394 (754)
239 3mkq_A Coatomer beta'-subunit; 85.8 3.1 0.0001 52.9 11.8 77 95-178 662-746 (814)
240 4gns_B Protein CSD3, chitin bi 85.3 1.7 5.7E-05 57.2 9.3 59 87-147 339-397 (754)
241 1zbp_A Hypothetical protein VP 84.6 4.4 0.00015 47.3 11.2 60 101-160 11-70 (273)
242 3mkq_B Coatomer subunit alpha; 79.5 23 0.00078 39.0 13.9 81 32-140 7-95 (177)
243 3mkq_B Coatomer subunit alpha; 77.2 9 0.00031 42.1 9.9 46 96-148 16-61 (177)
244 1zbp_A Hypothetical protein VP 73.5 7.2 0.00025 45.5 8.3 69 130-198 6-75 (273)
245 4fhn_B Nucleoporin NUP120; pro 69.5 21 0.00072 48.9 12.9 140 30-176 839-992 (1139)
246 1qsa_A Protein (soluble lytic 66.4 50 0.0017 42.6 14.7 144 36-198 217-360 (618)
247 4b4t_R RPN7, 26S proteasome re 61.2 16 0.00056 44.5 8.6 96 87-184 133-237 (429)
248 3txn_A 26S proteasome regulato 58.3 40 0.0014 41.2 11.1 148 34-183 20-209 (394)
249 3kae_A CDC27, possible protein 52.4 2.7E+02 0.0094 30.9 14.9 150 33-187 62-240 (242)
250 3kae_A CDC27, possible protein 49.8 2.1E+02 0.0072 31.8 13.5 93 91-190 39-149 (242)
251 4fhn_B Nucleoporin NUP120; pro 43.5 36 0.0012 46.6 8.3 89 88-178 845-961 (1139)
252 4b4t_P 26S proteasome regulato 36.5 2.7E+02 0.0093 34.1 13.8 98 85-184 137-247 (445)
253 3spa_A Mtrpol, DNA-directed RN 35.5 2.8E+02 0.0095 38.3 14.3 96 86-184 128-230 (1134)
254 1wy6_A Hypothetical protein ST 31.4 5.3E+02 0.018 27.9 14.9 145 31-184 5-154 (172)
255 2wpv_A GET4, UPF0363 protein Y 30.8 5.8E+02 0.02 30.2 14.7 113 32-178 31-157 (312)
256 3mkr_B Coatomer subunit alpha; 29.7 2.1E+02 0.0071 34.3 10.6 51 142-192 184-235 (320)
257 4b4t_P 26S proteasome regulato 29.6 4E+02 0.014 32.7 13.6 105 32-150 136-247 (445)
258 3mv2_A Coatomer subunit alpha; 27.3 2.5E+02 0.0086 33.7 10.7 135 33-198 114-250 (325)
259 3txn_A 26S proteasome regulato 27.2 3.3E+02 0.011 33.3 12.1 84 101-184 73-168 (394)
260 4b4t_S RPN3, 26S proteasome re 26.0 77 0.0026 40.2 6.5 67 121-189 231-304 (523)
261 4gq2_M Nucleoporin NUP120; bet 23.1 2.3E+02 0.008 38.2 10.7 102 30-135 837-950 (950)
262 2w2u_A Hypothetical P60 katani 22.4 71 0.0024 31.0 4.1 32 30-61 16-47 (83)
263 3spa_A Mtrpol, DNA-directed RN 22.1 4E+02 0.014 36.8 12.3 106 30-151 123-231 (1134)
264 2v6y_A AAA family ATPase, P60 22.1 72 0.0025 30.8 4.1 31 31-61 9-39 (83)
265 1wfd_A Hypothetical protein 15 21.6 60 0.0021 32.0 3.5 34 29-62 11-44 (93)
266 2xze_A STAM-binding protein; h 20.9 1.2E+02 0.0041 32.2 5.9 82 1594-1688 33-115 (146)
267 4b4t_R RPN7, 26S proteasome re 20.8 1.4E+02 0.0048 36.3 7.3 100 34-150 132-237 (429)
268 4a5x_A MITD1, MIT domain-conta 20.1 81 0.0028 30.7 4.0 32 30-61 13-44 (86)
No 1
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.73 E-value=9.8e-17 Score=174.70 Aligned_cols=189 Identities=16% Similarity=0.035 Sum_probs=158.1
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRC 109 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~ 109 (1962)
+..+..++..|..+.+.|++++|+..|+++++..| + ...+|.++|.++... |++++|+.+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-------~-----------~~~a~~~lg~~~~~~--g~~~~A~~~ 61 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENP-------Q-----------DPEALYWLARTQLKL--GLVNPALEN 61 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-------S-----------CHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------C-----------CHHHHHHHHHHHHHc--CCHHHHHHH
Confidence 45667889999999999999999999999998754 2 247899999999999 999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHc-----------CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 043158 110 YLQAVEIDTKDSVVWNQLGTLACSM-----------GLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVA 178 (1962)
Q Consensus 110 y~rALaLDP~DaeaW~nLG~al~~L-----------Gr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~ 178 (1962)
|++|++++|+++.+|+++|.++..+ |++++|+.+|+++++++|+++.++.++|.++..+|++++|+.+|
T Consensus 62 ~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~ 141 (217)
T 2pl2_A 62 GKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASL 141 (217)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHH
Confidence 9999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHhhhcCCCCCCCCCccccCccchhhHHHHhhhHHhhhhhhhhhhhccccccccccC-hhhHH
Q 043158 179 ELILRHWPSHSRALHVKNTIEETEPVPYAPRGIDKLEPKHVRLKFIDKRKAAAEILDEGVVCKKLNQNIELCLA-ESSWA 257 (1962)
Q Consensus 179 ~rALeLdPd~a~Al~lk~~I~~adP~~f~P~~~daL~p~~~~L~~i~krk~ed~~~dEAle~Rk~~~al~L~l~-~~SW~ 257 (1962)
+++++++ +++.++..++.+... .+ ++++|... +.+++.+.|. ...|.
T Consensus 142 ~~al~~~-~~~~~~~~la~~~~~----------------------------~g-~~~~A~~~--~~~al~~~P~~~~~~~ 189 (217)
T 2pl2_A 142 KQALALE-DTPEIRSALAELYLS----------------------------MG-RLDEALAQ--YAKALEQAPKDLDLRV 189 (217)
T ss_dssp HHHHHHC-CCHHHHHHHHHHHHH----------------------------HT-CHHHHHHH--HHHHHHHSTTCHHHHH
T ss_pred HHHHhcc-cchHHHHHHHHHHHH----------------------------cC-CHHHHHHH--HHHHHHhCCCChHHHH
Confidence 9999999 999888887776321 01 23444433 4456666765 67788
Q ss_pred HHHHHHHHHhCCC
Q 043158 258 ALADTLLDILCPL 270 (1962)
Q Consensus 258 ~LG~SLL~Ll~~~ 270 (1962)
.+|..+.......
T Consensus 190 ~la~~~~~~g~~~ 202 (217)
T 2pl2_A 190 RYASALLLKGKAE 202 (217)
T ss_dssp HHHHHHTC-----
T ss_pred HHHHHHHHccCHH
Confidence 8998887655443
No 2
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.72 E-value=7.6e-17 Score=207.80 Aligned_cols=152 Identities=16% Similarity=0.144 Sum_probs=143.8
Q ss_pred CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHH
Q 043158 29 PESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALR 108 (1962)
Q Consensus 29 ~eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe 108 (1962)
.++.+.++++.|..+.++|++++|+++|+++++..| + ...+|.|||.+|.++ |++++|++
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-------~-----------~~~a~~nLg~~l~~~--g~~~eA~~ 64 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP-------E-----------FAAAHSNLASVLQQQ--GKLQEALM 64 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-------C-----------CHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------C-----------CHHHHHHHHHHHHHc--CCHHHHHH
Confidence 478899999999999999999999999999998643 2 247899999999999 99999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 043158 109 CYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSH 188 (1962)
Q Consensus 109 ~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~ 188 (1962)
+|++|++++|+++++|+++|.++..+|++++|+.+|++||+++|+++.++.+||.++..+|++++|+.+|++|++++|++
T Consensus 65 ~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~ 144 (723)
T 4gyw_A 65 HYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF 144 (723)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhh
Q 043158 189 SRALHVKNTIEE 200 (1962)
Q Consensus 189 a~Al~lk~~I~~ 200 (1962)
+.++..++.+..
T Consensus 145 ~~a~~~L~~~l~ 156 (723)
T 4gyw_A 145 PDAYCNLAHCLQ 156 (723)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHhhhhhHHH
Confidence 999999988754
No 3
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.69 E-value=1.8e-16 Score=189.94 Aligned_cols=151 Identities=9% Similarity=0.002 Sum_probs=143.2
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCC-HHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSH-YESALR 108 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr-~eEALe 108 (1962)
+..+..++..|..+...|++++|+++|+++++..| + ++.+|+++|.++... |+ +++|+.
T Consensus 94 p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-------~-----------~~~a~~~~g~~l~~~--g~d~~eAl~ 153 (382)
T 2h6f_A 94 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNA-------A-----------NYTVWHFRRVLLKSL--QKDLHEEMN 153 (382)
T ss_dssp HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-------T-----------CHHHHHHHHHHHHHT--TCCHHHHHH
T ss_pred hhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-------c-----------CHHHHHHHHHHHHHc--ccCHHHHHH
Confidence 77889999999999999999999999999998643 2 368999999999999 86 999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 043158 109 CYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSH 188 (1962)
Q Consensus 109 ~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~ 188 (1962)
+|.+|++++|+++.+|+++|.++..+|++++|+.+|++||+++|+++.+|.++|.++..+|++++|+.+|+++++++|++
T Consensus 154 ~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~ 233 (382)
T 2h6f_A 154 YITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN 233 (382)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhh
Q 043158 189 SRALHVKNTIEE 200 (1962)
Q Consensus 189 a~Al~lk~~I~~ 200 (1962)
+.+|+.++.+..
T Consensus 234 ~~a~~~lg~~l~ 245 (382)
T 2h6f_A 234 NSVWNQRYFVIS 245 (382)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
No 4
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.68 E-value=1e-16 Score=165.78 Aligned_cols=141 Identities=11% Similarity=0.155 Sum_probs=125.8
Q ss_pred HHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC
Q 043158 40 GLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQAVEIDTK 119 (1962)
Q Consensus 40 AL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~ 119 (1962)
|..+...|++++|++.|++++..++ + +..+++++|.++.+. |++++|+++|.+|++++|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p-------~-----------~~~~~~~la~~y~~~--~~~~~A~~~~~~al~~~p~ 63 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPR-------Q-----------KSIKGFYFAKLYYEA--KEYDLAKKYICTYINVQER 63 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHH-------H-----------HHTTHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHcChHHHHHHHHHHhcccCc-------c-----------cHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCC
Confidence 3444566899999999999987643 1 235788999999999 9999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhCCCCHHHHHHHHHh
Q 043158 120 DSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSV-AELILRHWPSHSRALHVKNTI 198 (1962)
Q Consensus 120 DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~-~~rALeLdPd~a~Al~lk~~I 198 (1962)
++.+|+++|.++..+|++++|+.+|+++++++|+++.++.++|.++..+|++++|+.. +++|++++|+++.++.++..+
T Consensus 64 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~l 143 (150)
T 4ga2_A 64 DPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQL 143 (150)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999887765 599999999999999998877
Q ss_pred hh
Q 043158 199 EE 200 (1962)
Q Consensus 199 ~~ 200 (1962)
..
T Consensus 144 l~ 145 (150)
T 4ga2_A 144 LD 145 (150)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 5
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.65 E-value=2e-15 Score=152.54 Aligned_cols=112 Identities=14% Similarity=0.127 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 043158 85 FLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEV 164 (1962)
Q Consensus 85 ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~a 164 (1962)
..+|+|+|..++.. |++++|+.+|.+|++++|.++.+|+++|.++..+|++++|+.+|++||+++|+++.++.++|.+
T Consensus 13 a~~~~~~G~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKK--GDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 57899999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 043158 165 LIAIGDEVACLSVAELILRHWPSHSRALHVKNTI 198 (1962)
Q Consensus 165 L~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I 198 (1962)
+..+|++++|+.+|+++++++|+++.++..++.+
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 9999999999999999999999999988776543
No 6
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.65 E-value=2.6e-15 Score=163.49 Aligned_cols=152 Identities=13% Similarity=0.057 Sum_probs=139.6
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcC---------C
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQG---------S 100 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g---------~ 100 (1962)
+..+..++..|..+.+.|++++|+..|+++++..| + ...+|.++|.++...+ .
T Consensus 36 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-------~-----------~~~a~~~lg~~~~~~~~~~~~~~~~~ 97 (217)
T 2pl2_A 36 PQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-------R-----------YLGGYMVLSEAYVALYRQAEDRERGK 97 (217)
T ss_dssp SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------T-----------CHHHHHHHHHHHHHHHHTCSSHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------C-----------cHHHHHHHHHHHHHhhhhhhhhcccc
Confidence 78889999999999999999999999999998643 2 2468899999998760 0
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043158 101 SHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAEL 180 (1962)
Q Consensus 101 Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~r 180 (1962)
|++++|+.+|++|++++|+++.+|+++|.++..+|++++|+.+|++|++++ +++.++.++|.++..+|++++|+..|++
T Consensus 98 g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~ 176 (217)
T 2pl2_A 98 GYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAK 176 (217)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 379999999999999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHhhh
Q 043158 181 ILRHWPSHSRALHVKNTIEE 200 (1962)
Q Consensus 181 ALeLdPd~a~Al~lk~~I~~ 200 (1962)
+++++|+++.++..++.+..
T Consensus 177 al~~~P~~~~~~~~la~~~~ 196 (217)
T 2pl2_A 177 ALEQAPKDLDLRVRYASALL 196 (217)
T ss_dssp HHHHSTTCHHHHHHHHHHHT
T ss_pred HHHhCCCChHHHHHHHHHHH
Confidence 99999999999988877643
No 7
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.64 E-value=2.5e-15 Score=180.09 Aligned_cols=217 Identities=10% Similarity=0.050 Sum_probs=167.9
Q ss_pred cccHHHHHHHHHHHHHCCC-HHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKE-YDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALR 108 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGR-feEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe 108 (1962)
+..+..++.+|..+...|+ +++|++.|+++++..| + .+.+|+|+|.++... |++++|+.
T Consensus 128 P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-------~-----------~~~a~~~~g~~~~~~--g~~~eAl~ 187 (382)
T 2h6f_A 128 AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-------K-----------NYQVWHHRRVLVEWL--RDPSQELE 187 (382)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-------T-----------CHHHHHHHHHHHHHH--TCCTTHHH
T ss_pred ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-------C-----------CHHHHHHHHHHHHHc--cCHHHHHH
Confidence 7788889999999999997 9999999999998643 2 368999999999999 89999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHH
Q 043158 109 CYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIA-IGDEVAC-----LSVAELIL 182 (1962)
Q Consensus 109 ~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~-LGdyeeA-----L~~~~rAL 182 (1962)
+|++||+++|+++.+|+++|.++..+|++++|+.+|+++|+++|+++.+|.++|.++.. .|++++| +.+|++|+
T Consensus 188 ~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al 267 (382)
T 2h6f_A 188 FIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMI 267 (382)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999 5554777 58999999
Q ss_pred HhCCCCHHHHHHHHHhhhcCCCCCCCCCcc--------ccCccchhhHHHHh-hhHH---------hhhhhhhhhhhccc
Q 043158 183 RHWPSHSRALHVKNTIEETEPVPYAPRGID--------KLEPKHVRLKFIDK-RKAA---------AEILDEGVVCKKLN 244 (1962)
Q Consensus 183 eLdPd~a~Al~lk~~I~~adP~~f~P~~~d--------aL~p~~~~L~~i~k-rk~e---------d~~~dEAle~Rk~~ 244 (1962)
+++|+++.+|+.++.+....... .... ...|.+..+....+ .... ++.+++|+.+ +.
T Consensus 268 ~l~P~~~~a~~~l~~ll~~~g~~---~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~--~~ 342 (382)
T 2h6f_A 268 KLVPHNESAWNYLKGILQDRGLS---KYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALEL--CE 342 (382)
T ss_dssp HHSTTCHHHHHHHHHHHTTTCGG---GCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHH--HH
T ss_pred HHCCCCHHHHHHHHHHHHccCcc---chHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHH--HH
Confidence 99999999999988765431100 0000 11232221111111 1101 1124666654 33
Q ss_pred cc-cccccC-hhhHHHHHHHHHHHhCCCC
Q 043158 245 QN-IELCLA-ESSWAALADTLLDILCPLN 271 (1962)
Q Consensus 245 ~a-l~L~l~-~~SW~~LG~SLL~Ll~~~~ 271 (1962)
+. ..++|. ..-|..+|..|...+...+
T Consensus 343 ~l~~~~DP~r~~~w~~~~~~l~~~~~~~~ 371 (382)
T 2h6f_A 343 ILAKEKDTIRKEYWRYIGRSLQSKHSTEN 371 (382)
T ss_dssp HHHHTTCGGGHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHhCchhHHHHHHHHHHHHHHhccCC
Confidence 44 566665 7889999999997765443
No 8
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.63 E-value=1.3e-14 Score=150.89 Aligned_cols=150 Identities=17% Similarity=0.139 Sum_probs=123.8
Q ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 043158 31 SHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCY 110 (1962)
Q Consensus 31 eeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y 110 (1962)
+.+..+++.|..+.+.|++++|++.|+++++..| + +..+|.++|.++... |++++|+..+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-------~-----------~~~~~~~la~~~~~~--~~~~~a~~~~ 62 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-------N-----------NVETLLKLGKTYMDI--GLPNDAIESL 62 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-------T-----------CHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------C-----------CHHHHHHHHHHHHHC--CCHHHHHHHH
Confidence 4567789999999999999999999999998643 1 236778888888888 7888888888
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 043158 111 LQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSR 190 (1962)
Q Consensus 111 ~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~ 190 (1962)
.+++..+|+++.+|..+|.++...++++.|...+++++.++|+++.++..+|.++..+|++++|+.+|+++++++|+++.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 142 (184)
T 3vtx_A 63 KKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIR 142 (184)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhh
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhhh
Q 043158 191 ALHVKNTIEE 200 (1962)
Q Consensus 191 Al~lk~~I~~ 200 (1962)
+++.++.+..
T Consensus 143 ~~~~lg~~~~ 152 (184)
T 3vtx_A 143 AYQSIGLAYE 152 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8877776643
No 9
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.61 E-value=8.7e-15 Score=157.73 Aligned_cols=151 Identities=15% Similarity=-0.000 Sum_probs=138.5
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRC 109 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~ 109 (1962)
..++..+++.|..+...|++++|+..|+++++..+. . ...++.++|.++... |++++|+.+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~----~-------------~~~~~~~~~~~~~~~--~~~~~A~~~ 64 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNN----Q-------------DSVTAYNCGVCADNI--KKYKEAADY 64 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT----C-------------CHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCC----C-------------CcHHHHHHHHHHHHh--hcHHHHHHH
Confidence 556789999999999999999999999999985320 1 236788899999999 999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043158 110 YLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNW-------NCMEKLLEVLIAIGDEVACLSVAELIL 182 (1962)
Q Consensus 110 y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~-------~Al~nLg~aL~~LGdyeeAL~~~~rAL 182 (1962)
|.+|+.++|+++.+|+++|.++..+|++++|+.+|+++++++|+++ .++.++|.++..+|++++|+.+|++++
T Consensus 65 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 144 (228)
T 4i17_A 65 FDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT 144 (228)
T ss_dssp HHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 679999999999999999999999999
Q ss_pred HhCCC--CHHHHHHHHHhh
Q 043158 183 RHWPS--HSRALHVKNTIE 199 (1962)
Q Consensus 183 eLdPd--~a~Al~lk~~I~ 199 (1962)
+++|+ ++.++..++.+.
T Consensus 145 ~~~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 145 DVTSKKWKTDALYSLGVLF 163 (228)
T ss_dssp TSSCHHHHHHHHHHHHHHH
T ss_pred hcCCCcccHHHHHHHHHHH
Confidence 99999 888888887653
No 10
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.61 E-value=5.2e-15 Score=155.79 Aligned_cols=104 Identities=10% Similarity=0.026 Sum_probs=101.3
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 043158 84 RFLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLE 163 (1962)
Q Consensus 84 ~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~ 163 (1962)
...+++++|.++.+. |++++|+.+|++|+.++|+++.+|+++|.++..+|++++|+.+|++|++++|+++.+++++|.
T Consensus 35 ~~~~~~~lg~~~~~~--g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNK--GRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 357899999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCH
Q 043158 164 VLIAIGDEVACLSVAELILRHWPSHS 189 (1962)
Q Consensus 164 aL~~LGdyeeAL~~~~rALeLdPd~a 189 (1962)
++..+|++++|+.+|++++++.|+.+
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999976
No 11
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.60 E-value=1.3e-14 Score=157.09 Aligned_cols=134 Identities=8% Similarity=0.030 Sum_probs=106.9
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 043158 32 HLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYL 111 (1962)
Q Consensus 32 eAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~ 111 (1962)
.+..++++|..++..|++++|+..|+++++..|........... .....+....++++|.++... |++++|+.+|.
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~--~~~~~~~~~~~~~lg~~~~~~--g~~~~A~~~~~ 78 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNV--DKNSEISSKLATELALAYKKN--RNYDKAYLFYK 78 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHS--CTTSHHHHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhh--cchhhhhHHHHHHHHHHHHHC--CCHHHHHHHHH
Confidence 45678999999999999999999999999864311000000000 000111223345599999999 99999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 043158 112 QAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIG 169 (1962)
Q Consensus 112 rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LG 169 (1962)
+|++++|+++.+|+++|.++..+|++++|+.+|+++++++|+++.++.++|.+++..|
T Consensus 79 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 79 ELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999998875443
No 12
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.60 E-value=1.7e-14 Score=150.18 Aligned_cols=140 Identities=14% Similarity=0.066 Sum_probs=131.2
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRC 109 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~ 109 (1962)
+..+..++..|..+.+.|++++|+..+++++...+ . ...++.++|.++... ++++.|+..
T Consensus 36 p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-------~-----------~~~~~~~~~~~~~~~--~~~~~a~~~ 95 (184)
T 3vtx_A 36 PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-------T-----------SAEAYYILGSANFMI--DEKQAAIDA 95 (184)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-------C-----------CHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-------h-----------hHHHHHHHHHHHHHc--CCHHHHHHH
Confidence 77888899999999999999999999999987532 1 246788999999999 899999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 043158 110 YLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHS 189 (1962)
Q Consensus 110 y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a 189 (1962)
+.+|+.++|.++.+|..+|.++..+|++++|+.+|+++++++|+++.++.++|.++..+|++++|+.+|++|++++|+++
T Consensus 96 ~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 96 LQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999865
No 13
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.58 E-value=7e-14 Score=161.86 Aligned_cols=227 Identities=15% Similarity=0.206 Sum_probs=145.0
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccc-hhc--c---CCCC-------CchhhhHH---hHHHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIAN-AQA--A---DGKS-------SDGHLLQL---RFLALKNLAT 93 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~-a~~--~---d~~~-------s~s~lLqL---~ylAykNLG~ 93 (1962)
++.+..++..|..+...|++++|.+.|+++++..|... ... + ...+ ....++.+ ...+|.++|.
T Consensus 132 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 211 (388)
T 1w3b_A 132 PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGN 211 (388)
T ss_dssp TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 56666677777777777888888888887776433110 000 0 0000 00111111 2467778888
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 043158 94 VFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVA 173 (1962)
Q Consensus 94 lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyee 173 (1962)
++... |++++|+..|.+|+.++|+++.+|+++|.++...|++++|+.+|+++++++|+++.++.++|.++...|++++
T Consensus 212 ~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 289 (388)
T 1w3b_A 212 VLKEA--RIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAE 289 (388)
T ss_dssp HHHTT--TCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHc--CCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 88877 7888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHhhhcCCCCCCCCCcc----------ccCccchhhHHHHhhh-HHhhhhhhhhhhhc
Q 043158 174 CLSVAELILRHWPSHSRALHVKNTIEETEPVPYAPRGID----------KLEPKHVRLKFIDKRK-AAAEILDEGVVCKK 242 (1962)
Q Consensus 174 AL~~~~rALeLdPd~a~Al~lk~~I~~adP~~f~P~~~d----------aL~p~~~~L~~i~krk-~ed~~~dEAle~Rk 242 (1962)
|+.+++++++++|+++.++..++.+.... +..+ .+.|.........+.. .....+++|...
T Consensus 290 A~~~~~~al~~~p~~~~~~~~l~~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-- 361 (388)
T 1w3b_A 290 AEDCYNTALRLCPTHADSLNNLANIKREQ------GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH-- 361 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHTT------TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHH--
T ss_pred HHHHHHHHHhhCcccHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH--
Confidence 88888888888888887777766653311 1110 1122222222222211 011144555443
Q ss_pred cccccccccC-hhhHHHHHHHHHHH
Q 043158 243 LNQNIELCLA-ESSWAALADTLLDI 266 (1962)
Q Consensus 243 ~~~al~L~l~-~~SW~~LG~SLL~L 266 (1962)
+.+++.+.|. ...|..+|..+..+
T Consensus 362 ~~~a~~~~p~~~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 362 YKEAIRISPTFADAYSNMGNTLKEM 386 (388)
T ss_dssp HHHHHTTCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHhhCCCCHHHHHhHHHHHHHc
Confidence 3455566665 67788888877654
No 14
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.57 E-value=8.3e-14 Score=161.21 Aligned_cols=177 Identities=18% Similarity=0.165 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 043158 85 FLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEV 164 (1962)
Q Consensus 85 ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~a 164 (1962)
..+|.++|.++... |++++|+..|.++++++|+++.+|.++|.++..+|++++|+.+|+++++.+|+++.++.++|.+
T Consensus 101 ~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 178 (388)
T 1w3b_A 101 IDGYINLAAALVAA--GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCV 178 (388)
T ss_dssp HHHHHHHHHHHHHH--SCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 35677777777777 7777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhhcCCCCCCCCCcc-------ccCccchhhHHHHhhh-HHhhhhhh
Q 043158 165 LIAIGDEVACLSVAELILRHWPSHSRALHVKNTIEETEPVPYAPRGID-------KLEPKHVRLKFIDKRK-AAAEILDE 236 (1962)
Q Consensus 165 L~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I~~adP~~f~P~~~d-------aL~p~~~~L~~i~krk-~ed~~~dE 236 (1962)
+...|++++|+..|+++++++|+++.++..++.+....--. .... .+.|.+.......+.- .....+++
T Consensus 179 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~---~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 255 (388)
T 1w3b_A 179 FNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIF---DRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDL 255 (388)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCT---THHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHH
Confidence 77777777777777777777777777777666554321110 0000 1123322222221110 01113455
Q ss_pred hhhhhccccccccccC-hhhHHHHHHHHHHHhC
Q 043158 237 GVVCKKLNQNIELCLA-ESSWAALADTLLDILC 268 (1962)
Q Consensus 237 Ale~Rk~~~al~L~l~-~~SW~~LG~SLL~Ll~ 268 (1962)
|... +.+++.+.|. ...|..+|..+.....
T Consensus 256 A~~~--~~~al~~~p~~~~~~~~l~~~~~~~g~ 286 (388)
T 1w3b_A 256 AIDT--YRRAIELQPHFPDAYCNLANALKEKGS 286 (388)
T ss_dssp HHHH--HHHHHHTCSSCHHHHHHHHHHHHHHSC
T ss_pred HHHH--HHHHHhhCCCCHHHHHHHHHHHHHcCC
Confidence 5443 3445556655 5678888888776553
No 15
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.57 E-value=6.1e-14 Score=151.17 Aligned_cols=150 Identities=8% Similarity=0.138 Sum_probs=138.6
Q ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 043158 31 SHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCY 110 (1962)
Q Consensus 31 eeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y 110 (1962)
.+...++..|..+...|++++|+..|+++++..| + ...+|.++|.++... |++++|+.+|
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-------~-----------~~~~~~~l~~~~~~~--~~~~~A~~~~ 99 (228)
T 4i17_A 40 QDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-------N-----------LANAYIGKSAAYRDM--KNNQEYIATL 99 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-------S-----------HHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-------c-----------hHHHHHHHHHHHHHc--ccHHHHHHHH
Confidence 5667788899999999999999999999998643 1 247899999999999 9999999999
Q ss_pred HHHHHhCCCCH-------HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCH----------
Q 043158 111 LQAVEIDTKDS-------VVWNQLGTLACSMGLLSISRWAFEQGLLCSPN--NWNCMEKLLEVLIAIGDE---------- 171 (1962)
Q Consensus 111 ~rALaLDP~Da-------eaW~nLG~al~~LGr~eeAr~alErALeLdPd--~~~Al~nLg~aL~~LGdy---------- 171 (1962)
++|++++|+++ .+|+++|.++..+|++++|+.+|++|++++|+ ++.++.++|.++..+|+.
T Consensus 100 ~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 179 (228)
T 4i17_A 100 TEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLAS 179 (228)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTT
T ss_pred HHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999 77999999999999999999999999999999 999999999999999998
Q ss_pred -----------------HHHHHHHHHHHHhCCCCHHHHHHHHHhhh
Q 043158 172 -----------------VACLSVAELILRHWPSHSRALHVKNTIEE 200 (1962)
Q Consensus 172 -----------------eeAL~~~~rALeLdPd~a~Al~lk~~I~~ 200 (1962)
++|+.+++++++++|+++.++.++..+..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 180 SNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 99999999999999999999888877753
No 16
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.56 E-value=2.5e-14 Score=144.45 Aligned_cols=116 Identities=16% Similarity=0.175 Sum_probs=109.1
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRC 109 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~ 109 (1962)
|+.|..+.++|..+.+.|+|++|++.|+++++..| . ...+|.|+|.++..+ |++++|+.+
T Consensus 10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p-------~-----------~~~~~~~~~~~~~~~--~~~~~A~~~ 69 (126)
T 4gco_A 10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP-------E-----------NAILYSNRAACLTKL--MEFQRALDD 69 (126)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------T-----------CHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------C-----------CHHHHHHHhhHHHhh--ccHHHHHHH
Confidence 77889999999999999999999999999998643 1 247899999999999 999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 043158 110 YLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVL 165 (1962)
Q Consensus 110 y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL 165 (1962)
|.+|++++|+++.+|+++|.++..+|++++|+.+|++||+++|+++.++.+|+.+|
T Consensus 70 ~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 70 CDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999875
No 17
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.56 E-value=1.2e-14 Score=187.60 Aligned_cols=145 Identities=12% Similarity=0.100 Sum_probs=134.3
Q ss_pred ChhhhcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCC
Q 043158 22 TKEAQARPESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSS 101 (1962)
Q Consensus 22 TKEaQa~~eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~G 101 (1962)
.-++. ++.+.++++.|..+.++|++++|++.|+++++..| + ...+|.|+|.++.++ |
T Consensus 35 Al~l~---P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-------~-----------~~~a~~nLg~~l~~~--g 91 (723)
T 4gyw_A 35 ALEVF---PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-------T-----------FADAYSNMGNTLKEM--Q 91 (723)
T ss_dssp HHHHC---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------T-----------CHHHHHHHHHHHHHT--T
T ss_pred HHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------C-----------CHHHHHHHHHHHHHc--C
Confidence 34455 78889999999999999999999999999998643 2 247899999999999 9
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043158 102 HYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELI 181 (1962)
Q Consensus 102 r~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rA 181 (1962)
++++|+++|++|++++|+++++|+++|.++..+|++++|+.+|++||+++|+++.++.+||.++..+|++++|.+.++++
T Consensus 92 ~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~ka 171 (723)
T 4gyw_A 92 DVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKL 171 (723)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCH
Q 043158 182 LRHWPSHS 189 (1962)
Q Consensus 182 LeLdPd~a 189 (1962)
+++.|+..
T Consensus 172 l~l~~~~~ 179 (723)
T 4gyw_A 172 VSIVADQL 179 (723)
T ss_dssp HHHHHHHH
T ss_pred HHhChhHH
Confidence 99976643
No 18
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.55 E-value=1.5e-13 Score=145.54 Aligned_cols=142 Identities=12% Similarity=0.107 Sum_probs=129.5
Q ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 043158 31 SHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCY 110 (1962)
Q Consensus 31 eeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y 110 (1962)
.++..+|+.|..+...|++++|+..|++++.. ...+|.++|.++... |++++|+.+|
T Consensus 4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~---------------------~~~~~~~lg~~~~~~--g~~~~A~~~~ 60 (213)
T 1hh8_A 4 VEAISLWNEGVLAADKKDWKGALDAFSAVQDP---------------------HSRICFNIGCMYTIL--KNMTEAEKAF 60 (213)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTSSSC---------------------CHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC---------------------ChHHHHHHHHHHHHc--CCHHHHHHHH
Confidence 35678999999999999999999999998621 136899999999999 9999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH----------------HHHHHHHHHHHHcCCHHHH
Q 043158 111 LQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNW----------------NCMEKLLEVLIAIGDEVAC 174 (1962)
Q Consensus 111 ~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~----------------~Al~nLg~aL~~LGdyeeA 174 (1962)
.+|+.++|+++.+|+++|.++..+|++++|+.+|++++++.|++. .++.++|.++..+|++++|
T Consensus 61 ~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 140 (213)
T 1hh8_A 61 TRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKA 140 (213)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHH
Confidence 999999999999999999999999999999999999999888876 9999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHH
Q 043158 175 LSVAELILRHWPSHSRALHVK 195 (1962)
Q Consensus 175 L~~~~rALeLdPd~a~Al~lk 195 (1962)
+.+++++++++|++..+....
T Consensus 141 ~~~~~~al~~~p~~~~~~~~~ 161 (213)
T 1hh8_A 141 EEQLALATSMKSEPRHSKIDK 161 (213)
T ss_dssp HHHHHHHHTTCCSGGGGHHHH
T ss_pred HHHHHHHHHcCcccccchHHH
Confidence 999999999999876544433
No 19
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.55 E-value=2.9e-14 Score=173.99 Aligned_cols=151 Identities=14% Similarity=0.076 Sum_probs=136.0
Q ss_pred CcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHH
Q 043158 29 PESHLTQTYHEGLLKLQSKEY-DKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESAL 107 (1962)
Q Consensus 29 ~eeeAlalYqkAL~L~qqGRf-eEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEAL 107 (1962)
.+..+..++..|..+...|++ ++|++.|+++++..| + ...+|.++|.++... |++++|+
T Consensus 98 ~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-------~-----------~~~a~~~lg~~~~~~--g~~~~A~ 157 (474)
T 4abn_A 98 AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-------E-----------LVEAWNQLGEVYWKK--GDVTSAH 157 (474)
T ss_dssp CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-------T-----------CHHHHHHHHHHHHHH--TCHHHHH
T ss_pred CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-------C-----------CHHHHHHHHHHHHHc--CCHHHHH
Confidence 356788999999999999999 999999999998643 1 246899999999999 8999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHc---------CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--------CC
Q 043158 108 RCYLQAVEIDTKDSVVWNQLGTLACSM---------GLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAI--------GD 170 (1962)
Q Consensus 108 e~y~rALaLDP~DaeaW~nLG~al~~L---------Gr~eeAr~alErALeLdPd~~~Al~nLg~aL~~L--------Gd 170 (1962)
.+|++|++++|+ +.+|+++|.++..+ |++++|+.+|++|++++|+++.+|.++|.++..+ |+
T Consensus 158 ~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 158 TCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccch
Confidence 999999999999 79999999999999 9999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHhCC---CCHHHHHHHHHhhh
Q 043158 171 EVACLSVAELILRHWP---SHSRALHVKNTIEE 200 (1962)
Q Consensus 171 yeeAL~~~~rALeLdP---d~a~Al~lk~~I~~ 200 (1962)
+++|+.+|++|++++| +++.+++.++.+..
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~ 269 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHK 269 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHH
Confidence 9999999999999999 89999988877644
No 20
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.55 E-value=2.9e-14 Score=147.56 Aligned_cols=110 Identities=18% Similarity=0.143 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 043158 85 FLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEV 164 (1962)
Q Consensus 85 ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~a 164 (1962)
..+++++|.++... |++++|+.+|.+|+.++|+++.+|+++|.++..+|++++|+.+|++|++++|+++.++.++|.+
T Consensus 21 ~~~~~~~g~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQS--GXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 57899999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 043158 165 LIAIGDEVACLSVAELILRHWPSHSRALHVKN 196 (1962)
Q Consensus 165 L~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~ 196 (1962)
+..+|++++|+.+|+++++++|+++.....+.
T Consensus 99 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 130 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQELIANXPEFXELST 130 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCCCcchHHHH
Confidence 99999999999999999999999876544443
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.53 E-value=1.4e-13 Score=157.77 Aligned_cols=96 Identities=19% Similarity=0.166 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043158 103 YESALRCYLQAVEIDTK--DSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAEL 180 (1962)
Q Consensus 103 ~eEALe~y~rALaLDP~--DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~r 180 (1962)
+++|+.+|++|++++|+ ++.+|+++|.++..+|++++|+.+|+++++++|+++.++.++|.++..+|++++|+.+|++
T Consensus 193 ~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 272 (365)
T 4eqf_A 193 LEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTR 272 (365)
T ss_dssp HHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33333334444444444 5555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHhCCCCHHHHHHHHHh
Q 043158 181 ILRHWPSHSRALHVKNTI 198 (1962)
Q Consensus 181 ALeLdPd~a~Al~lk~~I 198 (1962)
+++++|+++.++..++.+
T Consensus 273 al~~~p~~~~~~~~l~~~ 290 (365)
T 4eqf_A 273 ALEIQPGFIRSRYNLGIS 290 (365)
T ss_dssp HHHHCTTCHHHHHHHHHH
T ss_pred HHhcCCCchHHHHHHHHH
Confidence 555555555555555443
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.52 E-value=2.5e-13 Score=155.53 Aligned_cols=211 Identities=9% Similarity=0.012 Sum_probs=131.8
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 043158 32 HLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYL 111 (1962)
Q Consensus 32 eAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~ 111 (1962)
.+..++..|..+.+.|++++|+..|+++++..| + ...+|.++|.++... |++++|+.+|.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-------~-----------~~~~~~~lg~~~~~~--g~~~~A~~~~~ 123 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-------G-----------DAEAWQFLGITQAEN--ENEQAAIVALQ 123 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-------T-----------CHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-------C-----------CHHHHHHHHHHHHHC--CCHHHHHHHHH
Confidence 345589999999999999999999999998543 1 135678888888888 78888888888
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHH----------HHHHHHcCCHHHHHHHHHHH
Q 043158 112 QAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKL----------LEVLIAIGDEVACLSVAELI 181 (1962)
Q Consensus 112 rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nL----------g~aL~~LGdyeeAL~~~~rA 181 (1962)
+|++++|+++.+|+++|.++..+|++++|+.+|+++++++|++..++.++ |.++..+|++++|+.+++++
T Consensus 124 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 203 (365)
T 4eqf_A 124 RCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEA 203 (365)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 88888888888888888888888888888888888887777655544443 55555556666666666666
Q ss_pred HHhCCC--CHHHHHHHHHhhhcCCCCCCCCCcc----------ccCccchhhHHHHhh-hHHhhhhhhhhhhhccccccc
Q 043158 182 LRHWPS--HSRALHVKNTIEETEPVPYAPRGID----------KLEPKHVRLKFIDKR-KAAAEILDEGVVCKKLNQNIE 248 (1962)
Q Consensus 182 LeLdPd--~a~Al~lk~~I~~adP~~f~P~~~d----------aL~p~~~~L~~i~kr-k~ed~~~dEAle~Rk~~~al~ 248 (1962)
++++|+ ++.++..++.+.... +..+ .+.|.+.......+. ......+++|... +.+++.
T Consensus 204 l~~~p~~~~~~~~~~l~~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~--~~~al~ 275 (365)
T 4eqf_A 204 AHQNGDMIDPDLQTGLGVLFHLS------GEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEA--YTRALE 275 (365)
T ss_dssp HHHSCSSCCHHHHHHHHHHHHHH------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH--HHHHHH
T ss_pred HHhCcCccCHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH--HHHHHh
Confidence 666665 555554444332210 0000 011211111111110 0011134555443 445566
Q ss_pred cccC-hhhHHHHHHHHHHHhCCC
Q 043158 249 LCLA-ESSWAALADTLLDILCPL 270 (1962)
Q Consensus 249 L~l~-~~SW~~LG~SLL~Ll~~~ 270 (1962)
+.|. ...|..+|..+..+....
T Consensus 276 ~~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 276 IQPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCCH
T ss_pred cCCCchHHHHHHHHHHHHCCCHH
Confidence 6666 778999999998777554
No 23
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.51 E-value=2.6e-14 Score=182.27 Aligned_cols=149 Identities=13% Similarity=0.014 Sum_probs=139.7
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRC 109 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~ 109 (1962)
++.+..++..|..+.+.|++++|++.|+++++..+ + ...+|+++|.++... |++++|+++
T Consensus 430 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-------~-----------~~~a~~~lg~~~~~~--g~~~~A~~~ 489 (681)
T 2pzi_A 430 SESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-------W-----------RWRLVWYRAVAELLT--GDYDSATKH 489 (681)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-------C-----------CHHHHHHHHHHHHHH--TCHHHHHHH
T ss_pred ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-------c-----------hHHHHHHHHHHHHHc--CCHHHHHHH
Confidence 66677888899999999999999999999998632 2 247899999999999 999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 043158 110 YLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHS 189 (1962)
Q Consensus 110 y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a 189 (1962)
|++|++++|+++.+|+++|.++..+|++++ +.+|++|++++|+++.++.++|.++..+|++++|+.+|++|++++|+++
T Consensus 490 ~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~ 568 (681)
T 2pzi_A 490 FTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFT 568 (681)
T ss_dssp HHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHH
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccH
Confidence 999999999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 043158 190 RALHVKNTIE 199 (1962)
Q Consensus 190 ~Al~lk~~I~ 199 (1962)
.++..++.+.
T Consensus 569 ~a~~~~~~~~ 578 (681)
T 2pzi_A 569 TARLTSAVTL 578 (681)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9999888874
No 24
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.50 E-value=2.6e-13 Score=133.68 Aligned_cols=113 Identities=9% Similarity=0.067 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 043158 85 FLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEV 164 (1962)
Q Consensus 85 ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~a 164 (1962)
..+|+++|..+... |++++|+.+|.+|+.++|+++.+|+++|.++..+|++++|+.+|+++++++|+++.++.++|.+
T Consensus 4 a~~~~~~g~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTK--SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 46899999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHhh
Q 043158 165 LIAIGDEVACLSVAELILRHW------PSHSRALHVKNTIE 199 (1962)
Q Consensus 165 L~~LGdyeeAL~~~~rALeLd------Pd~a~Al~lk~~I~ 199 (1962)
+..+|++++|+.+++++++++ |++..++..+..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 999999999999999999999 88887777666553
No 25
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.49 E-value=5e-13 Score=147.59 Aligned_cols=153 Identities=16% Similarity=0.036 Sum_probs=135.6
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRC 109 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~ 109 (1962)
+..+..+|..|..+.+.|++++|+..|+++++..|... ....+++++|.++... |++++|+..
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---------------~~~~a~~~lg~~~~~~--~~~~~A~~~ 74 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHE---------------WAADAQFYLARAYYQN--KEYLLAASE 74 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCST---------------THHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCc---------------chHHHHHHHHHHHHHh--CcHHHHHHH
Confidence 67788999999999999999999999999998643110 0247899999999999 999999999
Q ss_pred HHHHHHhCCCC---HHHHHHHHHHHHH--------cCChHHHHHHHHHHHhcCCCCHHHH-----------------HHH
Q 043158 110 YLQAVEIDTKD---SVVWNQLGTLACS--------MGLLSISRWAFEQGLLCSPNNWNCM-----------------EKL 161 (1962)
Q Consensus 110 y~rALaLDP~D---aeaW~nLG~al~~--------LGr~eeAr~alErALeLdPd~~~Al-----------------~nL 161 (1962)
|.+++.+.|++ +.+|+++|.++.. +|++++|+..|+++++.+|+++.+. .++
T Consensus 75 ~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~l 154 (261)
T 3qky_A 75 YERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEA 154 (261)
T ss_dssp HHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998855 7899999999999 9999999999999999999997776 888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHhh
Q 043158 162 LEVLIAIGDEVACLSVAELILRHWPSH---SRALHVKNTIE 199 (1962)
Q Consensus 162 g~aL~~LGdyeeAL~~~~rALeLdPd~---a~Al~lk~~I~ 199 (1962)
|.++..+|++++|+..|+++++..|++ +.+++.++.+.
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~ 195 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAY 195 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHH
Confidence 999999999999999999999999994 55777776653
No 26
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.49 E-value=1.7e-13 Score=167.28 Aligned_cols=151 Identities=15% Similarity=0.080 Sum_probs=138.0
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCC-------CC
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGS-------SH 102 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~-------Gr 102 (1962)
+..+..++..|..+.+.|++++|+++|+++++..| ...+|.++|.++..... |+
T Consensus 134 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-------------------~~~~~~~lg~~~~~~~~~~~~~~~g~ 194 (474)
T 4abn_A 134 PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCK-------------------NKVSLQNLSMVLRQLQTDSGDEHSRH 194 (474)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCC-------------------CHHHHHHHHHHHTTCCCSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-------------------CHHHHHHHHHHHHHhccCChhhhhhh
Confidence 67788899999999999999999999999998753 12678899999887500 47
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------CChHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcCCH
Q 043158 103 YESALRCYLQAVEIDTKDSVVWNQLGTLACSM--------GLLSISRWAFEQGLLCSP---NNWNCMEKLLEVLIAIGDE 171 (1962)
Q Consensus 103 ~eEALe~y~rALaLDP~DaeaW~nLG~al~~L--------Gr~eeAr~alErALeLdP---d~~~Al~nLg~aL~~LGdy 171 (1962)
+++|+.+|++|++++|+++.+|+++|.++..+ |++++|+.+|++|++++| +++.++.++|.++..+|++
T Consensus 195 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~ 274 (474)
T 4abn_A 195 VMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESY 274 (474)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCH
Confidence 99999999999999999999999999999999 999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHhh
Q 043158 172 VACLSVAELILRHWPSHSRALHVKNTIE 199 (1962)
Q Consensus 172 eeAL~~~~rALeLdPd~a~Al~lk~~I~ 199 (1962)
++|+.+|++|++++|+++.++..++.+.
T Consensus 275 ~~A~~~~~~al~l~p~~~~a~~~l~~~~ 302 (474)
T 4abn_A 275 GEALEGFSQAAALDPAWPEPQQREQQLL 302 (474)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999999999999999999888876653
No 27
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.49 E-value=3.4e-13 Score=144.49 Aligned_cols=147 Identities=16% Similarity=0.170 Sum_probs=92.9
Q ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 043158 31 SHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCY 110 (1962)
Q Consensus 31 eeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y 110 (1962)
..+..++..|..+...|++++|+..|+++++.. . ...+|.++|.++... |++++|+.+|
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~-----------------~~~~~~~~~~~~~~~--~~~~~A~~~~ 61 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH--K-----------------DITYLNNRAAAEYEK--GEYETAISTL 61 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--C-----------------CTHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--c-----------------cHHHHHHHHHHHHHc--ccHHHHHHHH
Confidence 457788999999999999999999999998753 1 013455555555555 5555555555
Q ss_pred HHHHHhCCCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHh--------------------------cCCCCHHH
Q 043158 111 LQAVEIDTKD-------SVVWNQLGTLACSMGLLSISRWAFEQGLL--------------------------CSPNNWNC 157 (1962)
Q Consensus 111 ~rALaLDP~D-------aeaW~nLG~al~~LGr~eeAr~alErALe--------------------------LdPd~~~A 157 (1962)
.+|++++|++ +.+|+++|.++..+|++++|+.+|++++. .+|+.+.+
T Consensus 62 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 141 (258)
T 3uq3_A 62 NDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEE 141 (258)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHH
Confidence 5555555554 55555555555555555555555555555 44445555
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 043158 158 MEKLLEVLIAIGDEVACLSVAELILRHWPSHSRALHVKNTI 198 (1962)
Q Consensus 158 l~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I 198 (1962)
+.++|.++...|++++|+.+++++++.+|+++.++..++.+
T Consensus 142 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 182 (258)
T 3uq3_A 142 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAA 182 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 55555555555666666666666665555555555554443
No 28
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.49 E-value=1.6e-12 Score=147.66 Aligned_cols=147 Identities=15% Similarity=0.111 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 043158 33 LTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQ 112 (1962)
Q Consensus 33 AlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~r 112 (1962)
+..++..|..+.+.|++++|+..|+++++..| + ...+|.++|.++... |++++|+.+|.+
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-------~-----------~~~~~~~l~~~~~~~--g~~~~A~~~~~~ 123 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-------K-----------HMEAWQYLGTTQAEN--EQELLAISALRR 123 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-------T-----------CHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-------C-----------CHHHHHHHHHHHHHC--cCHHHHHHHHHH
Confidence 45688999999999999999999999998643 1 134566777777776 677777777777
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC----------------------------------------
Q 043158 113 AVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSP---------------------------------------- 152 (1962)
Q Consensus 113 ALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdP---------------------------------------- 152 (1962)
|++++|+++.+|+++|.++..+|++++|+..|++++.++|
T Consensus 124 al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 203 (368)
T 1fch_A 124 CLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKEL 203 (368)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHH
Confidence 7777777777777777777777776666666665555444
Q ss_pred ---------C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhh
Q 043158 153 ---------N--NWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSRALHVKNTIE 199 (1962)
Q Consensus 153 ---------d--~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I~ 199 (1962)
+ .+.++.++|.++...|++++|+.+++++++++|+++.++..++.+.
T Consensus 204 ~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 261 (368)
T 1fch_A 204 FLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATL 261 (368)
T ss_dssp HHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 3 5667777788888888888888888888888888777777766553
No 29
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.49 E-value=5.7e-13 Score=145.36 Aligned_cols=150 Identities=13% Similarity=0.114 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 043158 34 TQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQA 113 (1962)
Q Consensus 34 lalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rA 113 (1962)
..++..|..+...|++++|+..|+++++.+.. + . ....+|.++|.++... |++++|+.+|.+|
T Consensus 38 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~----~-~----------~~~~~~~~lg~~~~~~--~~~~~A~~~~~~a 100 (272)
T 3u4t_A 38 YIYNRRAVCYYELAKYDLAQKDIETYFSKVNA----T-K----------AKSADFEYYGKILMKK--GQDSLAIQQYQAA 100 (272)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCT----T-T----------CCHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhccCc----h-h----------HHHHHHHHHHHHHHHc--ccHHHHHHHHHHH
Confidence 34445555555555555555555555553210 0 0 0246789999999999 8999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 043158 114 VEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSRALH 193 (1962)
Q Consensus 114 LaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~Al~ 193 (1962)
++++|+++.+|.++|.++..+|++++|+.+|+++++++|+++.++.++|..++..+++++|+.+++++++++|+++.++.
T Consensus 101 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 180 (272)
T 3u4t_A 101 VDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYL 180 (272)
T ss_dssp HHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHH
Confidence 99999999999999999999999999999999999999999999999996666677999999999999999999999988
Q ss_pred HHHHhhh
Q 043158 194 VKNTIEE 200 (1962)
Q Consensus 194 lk~~I~~ 200 (1962)
.++.+..
T Consensus 181 ~~~~~~~ 187 (272)
T 3u4t_A 181 WRARANA 187 (272)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877643
No 30
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.48 E-value=3e-13 Score=137.31 Aligned_cols=112 Identities=16% Similarity=0.090 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 043158 85 FLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEV 164 (1962)
Q Consensus 85 ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~a 164 (1962)
..+++++|..+... |++++|+..|.+|+.++|+++.+|+++|.++..+|++++|+.+|++|+.++|+++.++.++|.+
T Consensus 18 ~~~~~~~a~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQA--GKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--ccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 46889999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 043158 165 LIAIGDEVACLSVAELILRHWPSHSRALHVKNTI 198 (1962)
Q Consensus 165 L~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I 198 (1962)
+..+|++++|+.+|+++++++|+++....++..+
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 9999999999999999999999988666555443
No 31
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.48 E-value=1.3e-12 Score=132.44 Aligned_cols=150 Identities=13% Similarity=0.088 Sum_probs=137.0
Q ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 043158 31 SHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCY 110 (1962)
Q Consensus 31 eeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y 110 (1962)
..+..++..|..+...|++++|...|+++++..+ . ...++.++|.++... |++++|+..|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-------~-----------~~~~~~~~~~~~~~~--~~~~~A~~~~ 65 (186)
T 3as5_A 6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADA-------F-----------DVDVALHLGIAYVKT--GAVDRGTELL 65 (186)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-------C-----------CHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-------c-----------ChHHHHHHHHHHHHc--CCHHHHHHHH
Confidence 3466788899999999999999999999987643 1 136788999999999 8999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 043158 111 LQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSR 190 (1962)
Q Consensus 111 ~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~ 190 (1962)
.++++++|+++.+|.++|.++...|++++|+.+|++++..+|+++.++..+|.++..+|++++|+.+++++++.+|+++.
T Consensus 66 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 145 (186)
T 3as5_A 66 ERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGK 145 (186)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHhhh
Q 043158 191 ALHVKNTIEE 200 (1962)
Q Consensus 191 Al~lk~~I~~ 200 (1962)
++..++.+..
T Consensus 146 ~~~~la~~~~ 155 (186)
T 3as5_A 146 VHRAIAFSYE 155 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888877644
No 32
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.48 E-value=1.3e-12 Score=146.22 Aligned_cols=149 Identities=17% Similarity=0.146 Sum_probs=137.1
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 043158 32 HLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYL 111 (1962)
Q Consensus 32 eAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~ 111 (1962)
++..++..|..+...|++++|+..|+++++..| + ...+|.++|.++... |++++|+..|.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-------~-----------~~~~~~~~a~~~~~~--~~~~~A~~~~~ 61 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-------D-----------NYIAYYRRATVFLAM--GKSKAALPDLT 61 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------T-----------CHHHHHHHHHHHHHH--TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-------c-----------cHHHHHHHHHHHHHc--cCHHHHHHHHH
Confidence 467889999999999999999999999998543 1 246899999999999 89999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC---CCHHHHHHH------------HHHHHHcCCHHHHHH
Q 043158 112 QAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSP---NNWNCMEKL------------LEVLIAIGDEVACLS 176 (1962)
Q Consensus 112 rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdP---d~~~Al~nL------------g~aL~~LGdyeeAL~ 176 (1962)
+|++++|+++.+|+.+|.++...|++++|+.+|+++++++| +++.++..+ |.++...|++++|+.
T Consensus 62 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~ 141 (359)
T 3ieg_A 62 KVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAIT 141 (359)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 99999999999999999999999999999999999999999 999999888 689999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHhhh
Q 043158 177 VAELILRHWPSHSRALHVKNTIEE 200 (1962)
Q Consensus 177 ~~~rALeLdPd~a~Al~lk~~I~~ 200 (1962)
.++++++.+|+++.++..++.+..
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~ 165 (359)
T 3ieg_A 142 FLDKILEVCVWDAELRELRAECFI 165 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCchHHHHHHHHHHH
Confidence 999999999999998888877643
No 33
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.48 E-value=3.6e-13 Score=139.11 Aligned_cols=112 Identities=13% Similarity=0.070 Sum_probs=106.3
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 043158 84 RFLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLE 163 (1962)
Q Consensus 84 ~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~ 163 (1962)
...+|+++|.++... |++++|+.+|.+|++++|+++.+|+++|.++..+|++++|+.+|+++++++|+++.++.++|.
T Consensus 10 ~a~~~~~~g~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMAR--KEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 357899999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 043158 164 VLIAIGDEVACLSVAELILRHWPSHSRALHVKNT 197 (1962)
Q Consensus 164 aL~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~ 197 (1962)
++..+|++++|+.+|+++++++|+++.++..+..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 9999999999999999999999999887655543
No 34
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.48 E-value=1.3e-13 Score=176.02 Aligned_cols=179 Identities=11% Similarity=-0.090 Sum_probs=150.9
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHh--------cCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCH
Q 043158 32 HLTQTYHEGLLKLQSKEYDKAQELLESVL--------KDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHY 103 (1962)
Q Consensus 32 eAlalYqkAL~L~qqGRfeEA~eaY~raL--------a~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~ 103 (1962)
++...+..| ...|++++|++.|++++ +..+ + ...+|.++|.++.+. |++
T Consensus 393 ~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p-------~-----------~~~~~~~~a~~~~~~--g~~ 449 (681)
T 2pzi_A 393 DVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFS-------E-----------SVELPLMEVRALLDL--GDV 449 (681)
T ss_dssp STTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCT-------T-----------CSHHHHHHHHHHHHH--TCH
T ss_pred CcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccc-------c-----------chhHHHHHHHHHHhc--CCH
Confidence 334455555 67899999999999999 3221 1 236899999999999 999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043158 104 ESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILR 183 (1962)
Q Consensus 104 eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALe 183 (1962)
++|++.|++|++++|+++.+|+++|.++..+|++++|+.+|++|++++|+++.++.++|.++..+|++++ +.+|++|++
T Consensus 450 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~ 528 (681)
T 2pzi_A 450 AKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWS 528 (681)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH
T ss_pred HHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred hCCCCHHHHHHHHHhhhcCCCCCCCCCccccCccchhhHHHHhhhHHhhhhhhhhhhhccccccccccC-hhhHHHHHHH
Q 043158 184 HWPSHSRALHVKNTIEETEPVPYAPRGIDKLEPKHVRLKFIDKRKAAAEILDEGVVCKKLNQNIELCLA-ESSWAALADT 262 (1962)
Q Consensus 184 LdPd~a~Al~lk~~I~~adP~~f~P~~~daL~p~~~~L~~i~krk~ed~~~dEAle~Rk~~~al~L~l~-~~SW~~LG~S 262 (1962)
++|+++.+++.++.+... -+ ++++|+.. +.+++.+.|. ...|.++|.+
T Consensus 529 ~~P~~~~a~~~lg~~~~~------~g-----------------------~~~~A~~~--~~~al~l~P~~~~a~~~~~~~ 577 (681)
T 2pzi_A 529 TNDGVISAAFGLARARSA------EG-----------------------DRVGAVRT--LDEVPPTSRHFTTARLTSAVT 577 (681)
T ss_dssp HCTTCHHHHHHHHHHHHH------TT-----------------------CHHHHHHH--HHTSCTTSTTHHHHHHHHHHH
T ss_pred hCCchHHHHHHHHHHHHH------cC-----------------------CHHHHHHH--HHhhcccCcccHHHHHHHHHH
Confidence 999999999998887431 11 23445443 4667777777 6788888888
Q ss_pred HHH
Q 043158 263 LLD 265 (1962)
Q Consensus 263 LL~ 265 (1962)
++.
T Consensus 578 ~~~ 580 (681)
T 2pzi_A 578 LLS 580 (681)
T ss_dssp TC-
T ss_pred HHc
Confidence 753
No 35
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.47 E-value=2.4e-13 Score=137.04 Aligned_cols=102 Identities=15% Similarity=0.138 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH-------HH
Q 043158 85 FLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNW-------NC 157 (1962)
Q Consensus 85 ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~-------~A 157 (1962)
..+++|+|..++.. |++++|+.+|.+|++++|+++.+|+++|.++..+|++++|+.+|++||+++|+++ .+
T Consensus 8 A~a~~~lG~~~~~~--~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQ--KDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 57899999999999 9999999999999999999999999999999999999999999999999999874 47
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 043158 158 MEKLLEVLIAIGDEVACLSVAELILRHWPSH 188 (1962)
Q Consensus 158 l~nLg~aL~~LGdyeeAL~~~~rALeLdPd~ 188 (1962)
+.++|.++..+|++++|+.+|+++++.+|+.
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~ 116 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP 116 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcCH
Confidence 8999999999999999999999999998863
No 36
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.47 E-value=2.2e-12 Score=143.31 Aligned_cols=134 Identities=14% Similarity=0.041 Sum_probs=72.9
Q ss_pred cHHHHHHHHHHHHHCC-CHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 043158 32 HLTQTYHEGLLKLQSK-EYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCY 110 (1962)
Q Consensus 32 eAlalYqkAL~L~qqG-RfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y 110 (1962)
.+..++..|..+...| ++++|...|+++++..+. ...+|.++|.++... |++++|+.+|
T Consensus 89 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~------------------~~~~~~~l~~~~~~~--~~~~~A~~~~ 148 (330)
T 3hym_B 89 NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKT------------------YGPAWIAYGHSFAVE--SEHDQAMAAY 148 (330)
T ss_dssp STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTT------------------CTHHHHHHHHHHHHH--TCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCc------------------cHHHHHHHHHHHHHc--cCHHHHHHHH
Confidence 3344444555555555 555555555555543220 123455555555555 5555555555
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 043158 111 LQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHW 185 (1962)
Q Consensus 111 ~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLd 185 (1962)
.+|++++|++..+|+.+|.++...|++++|+.+|+++++.+|+++.++.++|.++..+|++++|+.++++++++.
T Consensus 149 ~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 223 (330)
T 3hym_B 149 FTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKI 223 (330)
T ss_dssp HHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHh
Confidence 555555555555555555555555555555555555555555555555555555555555555555555555554
No 37
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.47 E-value=1.9e-12 Score=138.28 Aligned_cols=111 Identities=14% Similarity=0.138 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 043158 86 LALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVL 165 (1962)
Q Consensus 86 lAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL 165 (1962)
.++.++|.++... |++++|+..|.++++.+|.++.+|+.+|.++...|++++|+..|+++++.+|+++.++..+|.++
T Consensus 92 ~~~~~la~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 169 (243)
T 2q7f_A 92 TAYYGAGNVYVVK--EMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCL 169 (243)
T ss_dssp HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 4455555555555 55555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 043158 166 IAIGDEVACLSVAELILRHWPSHSRALHVKNTI 198 (1962)
Q Consensus 166 ~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I 198 (1962)
...|++++|+..++++++.+|+++.++..++.+
T Consensus 170 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 202 (243)
T 2q7f_A 170 ANEGMLDEALSQFAAVTEQDPGHADAFYNAGVT 202 (243)
T ss_dssp HHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 555555555555555555555555555444444
No 38
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.47 E-value=1e-12 Score=140.25 Aligned_cols=183 Identities=17% Similarity=0.096 Sum_probs=146.9
Q ss_pred CCCCcCChhhhcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccc-hhc--c---CCCCCc-------hhhhH
Q 043158 16 WEPLAPTKEAQARPESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIAN-AQA--A---DGKSSD-------GHLLQ 82 (1962)
Q Consensus 16 ~E~~~~TKEaQa~~eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~-a~~--~---d~~~s~-------s~lLq 82 (1962)
++++..-+++....+..+..++..|..+...|++++|+..|+++++..+... ... + ...+.. ..++.
T Consensus 40 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 119 (243)
T 2q7f_A 40 EKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALR 119 (243)
T ss_dssp --CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3344444444333377888999999999999999999999999997543111 100 0 000111 11222
Q ss_pred H---hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHH
Q 043158 83 L---RFLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCME 159 (1962)
Q Consensus 83 L---~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~ 159 (1962)
. ...++.++|.++... |++++|+..|.++++++|+++.+|+.+|.++...|++++|+.+|++++..+|+++.++.
T Consensus 120 ~~~~~~~~~~~~a~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 197 (243)
T 2q7f_A 120 AGMENGDLFYMLGTVLVKL--EQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFY 197 (243)
T ss_dssp HTCCSHHHHHHHHHHHHHT--SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 2 357899999999999 89999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhh
Q 043158 160 KLLEVLIAIGDEVACLSVAELILRHWPSHSRALHVKNTIEE 200 (1962)
Q Consensus 160 nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I~~ 200 (1962)
.+|.++..+|++++|+.+++++++++|+++.++..+..+..
T Consensus 198 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~ 238 (243)
T 2q7f_A 198 NAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGH 238 (243)
T ss_dssp HHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC---
T ss_pred HHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHh
Confidence 99999999999999999999999999999999988877654
No 39
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.46 E-value=8.5e-13 Score=162.97 Aligned_cols=147 Identities=11% Similarity=-0.038 Sum_probs=136.9
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRC 109 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~ 109 (1962)
+..+..++..|..+.+.|++++|++.|+++++..+ + ...+|.++|.++... |++++|+.+
T Consensus 20 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-------~-----------~~~~~~~lg~~~~~~--g~~~~A~~~ 79 (568)
T 2vsy_A 20 PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-------G-----------HPEAVARLGRVRWTQ--QRHAEAAVL 79 (568)
T ss_dssp -CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-------T-----------CHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------C-----------CHHHHHHHHHHHHHC--CCHHHHHHH
Confidence 77889999999999999999999999999998743 1 246899999999999 999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCC
Q 043158 110 YLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAI---GDEVACLSVAELILRHWP 186 (1962)
Q Consensus 110 y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~L---GdyeeAL~~~~rALeLdP 186 (1962)
|++|++++|+++.+|+++|.++..+|++++|+.+|+++++++|+++.++.++|.++..+ |++++|+..++++++.+|
T Consensus 80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p 159 (568)
T 2vsy_A 80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGV 159 (568)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred CCHHHHHHHH
Q 043158 187 SHSRALHVKN 196 (1962)
Q Consensus 187 d~a~Al~lk~ 196 (1962)
++..++.++.
T Consensus 160 ~~~~~~~~l~ 169 (568)
T 2vsy_A 160 GAVEPFAFLS 169 (568)
T ss_dssp CCSCHHHHTT
T ss_pred cccChHHHhC
Confidence 9887775543
No 40
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.46 E-value=2.7e-13 Score=135.85 Aligned_cols=103 Identities=12% Similarity=0.102 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 043158 86 LALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVL 165 (1962)
Q Consensus 86 lAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL 165 (1962)
..+.++|..+.+. |++++|+.+|++|++++|+++.+|+++|.++..+|++++|+.+|++|++++|+++.++.+||.++
T Consensus 18 ~~~~~~g~~~~~~--g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 18 ENPMEEGLSMLKL--ANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 95 (121)
T ss_dssp SCHHHHHHHHHHT--TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHc--CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3578899999999 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHH
Q 043158 166 IAIGDEVACLSVAELILRHWPSHSR 190 (1962)
Q Consensus 166 ~~LGdyeeAL~~~~rALeLdPd~a~ 190 (1962)
..+|++++|+.+++++++++|+++.
T Consensus 96 ~~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC-------
T ss_pred HHcCCHHHHHHHHHHHHHhCcCCCC
Confidence 9999999999999999999998763
No 41
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.46 E-value=3.2e-13 Score=142.14 Aligned_cols=107 Identities=12% Similarity=0.124 Sum_probs=100.4
Q ss_pred CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHH
Q 043158 29 PESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALR 108 (1962)
Q Consensus 29 ~eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe 108 (1962)
.++.+..+|..|..+.+.|++++|+..|+++++..| + +..+|.++|.++... |++++|+.
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-------~-----------~~~~~~~lg~~~~~~--g~~~~Ai~ 91 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-------Y-----------NVDYIMGLAAIYQIK--EQFQQAAD 91 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------T-----------CHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------C-----------CHHHHHHHHHHHHHH--ccHHHHHH
Confidence 388999999999999999999999999999998654 2 247899999999999 99999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH
Q 043158 109 CYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNW 155 (1962)
Q Consensus 109 ~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~ 155 (1962)
+|++|++++|+++.+|+++|.++..+|++++|+.+|++|++++|+.+
T Consensus 92 ~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 92 LYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999999999999999999999999865
No 42
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.46 E-value=5.2e-13 Score=145.67 Aligned_cols=146 Identities=8% Similarity=0.101 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 043158 34 TQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQA 113 (1962)
Q Consensus 34 lalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rA 113 (1962)
..++..|..+...|++++|+..|+++++..| +. ..++.++|.++... |++++|+.+|.+|
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-------~~-----------~~~~~~l~~~~~~~--~~~~~A~~~~~~a 63 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKY-------NS-----------PYIYNRRAVCYYEL--AKYDLAQKDIETY 63 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-------CC-----------STTHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-------Cc-----------HHHHHHHHHHHHHH--hhHHHHHHHHHHH
Confidence 4578999999999999999999999998643 11 14688999999999 9999999999999
Q ss_pred HHhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 043158 114 VEIDTKDS----VVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHS 189 (1962)
Q Consensus 114 LaLDP~Da----eaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a 189 (1962)
++ .|.++ .+|+++|.++..+|++++|+.+|+++++++|+++.++.++|.++..+|++++|+.+++++++++|+++
T Consensus 64 ~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~ 142 (272)
T 3u4t_A 64 FS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDP 142 (272)
T ss_dssp HT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCH
T ss_pred Hh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcH
Confidence 99 55554 45999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-Hhhh
Q 043158 190 RALHVKN-TIEE 200 (1962)
Q Consensus 190 ~Al~lk~-~I~~ 200 (1962)
.++..++ .+..
T Consensus 143 ~~~~~l~~~~~~ 154 (272)
T 3u4t_A 143 KVFYELGQAYYY 154 (272)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 9999888 6543
No 43
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.46 E-value=2.5e-12 Score=135.01 Aligned_cols=150 Identities=15% Similarity=0.110 Sum_probs=136.3
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRC 109 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~ 109 (1962)
+..+..++..|..+...|++++|...|+++++..+ + ...+|.++|.++... |++++|+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-------~-----------~~~~~~~l~~~~~~~--~~~~~A~~~ 64 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDP-------K-----------NELAWLVRAEIYQYL--KVNDKAQES 64 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------T-----------CHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-------c-----------chHHHHHHHHHHHHc--CChHHHHHH
Confidence 66788899999999999999999999999997532 1 136788999999999 899999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 043158 110 YLQAVEIDTKDSVVWNQLGTLACSM-GLLSISRWAFEQGLL--CSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWP 186 (1962)
Q Consensus 110 y~rALaLDP~DaeaW~nLG~al~~L-Gr~eeAr~alErALe--LdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdP 186 (1962)
|.+|+.++|+++.+|+++|.++... |++++|+.+|+++++ .+|+.+.++.++|.++..+|++++|+.+++++++.+|
T Consensus 65 ~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 144 (225)
T 2vq2_A 65 FRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP 144 (225)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999 999999999999999 6777789999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhh
Q 043158 187 SHSRALHVKNTIE 199 (1962)
Q Consensus 187 d~a~Al~lk~~I~ 199 (1962)
+++.++..++.+.
T Consensus 145 ~~~~~~~~la~~~ 157 (225)
T 2vq2_A 145 QFPPAFKELARTK 157 (225)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCchHHHHHHHHH
Confidence 9998887776653
No 44
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.46 E-value=1.9e-12 Score=123.82 Aligned_cols=134 Identities=21% Similarity=0.276 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 043158 34 TQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQA 113 (1962)
Q Consensus 34 lalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rA 113 (1962)
..++..|..+...|++++|...|+++++..+ + ...++.++|.++... |++++|+..|.++
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-------~-----------~~~~~~~~a~~~~~~--~~~~~A~~~~~~~ 61 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP-------R-----------SAEAWYNLGNAYYKQ--GDYDEAIEYYQKA 61 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-------T-----------CHHHHHHHHHHHHHH--TCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-------c-----------chhHHHHHHHHHHHh--cCHHHHHHHHHHH
Confidence 3578889999999999999999999987532 1 135788999999999 8999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 043158 114 VEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPS 187 (1962)
Q Consensus 114 LaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd 187 (1962)
+..+|.++.+|+++|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|..+++++++.+|+
T Consensus 62 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 62 LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999986
No 45
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.46 E-value=2e-13 Score=146.56 Aligned_cols=103 Identities=12% Similarity=0.064 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHcCChHHHHHHHHHHHhc--
Q 043158 85 FLALKNLATVFLQQGSSHYESALRCYLQAVEIDTK-------DSV-----VWNQLGTLACSMGLLSISRWAFEQGLLC-- 150 (1962)
Q Consensus 85 ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~-------Dae-----aW~nLG~al~~LGr~eeAr~alErALeL-- 150 (1962)
...+.++|..+... |++++|+.+|.+||+++|+ +.. +|+|+|.++..+|++++|+.+|++||++
T Consensus 11 a~~~~~~G~~l~~~--g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n 88 (159)
T 2hr2_A 11 AYLALSDAQRQLVA--GEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 88 (159)
T ss_dssp HHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC--CCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 46789999999999 9999999999999999999 554 9999999999999999999999999999
Q ss_pred -----CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 043158 151 -----SPNNWNCM----EKLLEVLIAIGDEVACLSVAELILRHWPSHS 189 (1962)
Q Consensus 151 -----dPd~~~Al----~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a 189 (1962)
+|+++.+| +++|.+|..+|++++|+.+|++|++++|++.
T Consensus 89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~ 136 (159)
T 2hr2_A 89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 136 (159)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence 99999999 9999999999999999999999999999875
No 46
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.45 E-value=2.2e-12 Score=138.30 Aligned_cols=163 Identities=9% Similarity=0.047 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhc--cC---CCCCchhhhHH---hHHHHHHHHHHHHHcCCCCHH
Q 043158 33 LTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQA--AD---GKSSDGHLLQL---RFLALKNLATVFLQQGSSHYE 104 (1962)
Q Consensus 33 AlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~--~d---~~~s~s~lLqL---~ylAykNLG~lLl~~g~Gr~e 104 (1962)
+..++..|..+...|++++|...|+++++..+...... ++ .......++.. ...+|.++|.++... |+++
T Consensus 79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 156 (258)
T 3uq3_A 79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTK--SDWP 156 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHT--TCHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHh--cCHH
Confidence 67788899999999999999999999998543211000 00 00000111111 357899999999999 9999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 043158 105 SALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRH 184 (1962)
Q Consensus 105 EALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeL 184 (1962)
+|+.+|.+|+.++|.++.+|+++|.++..+|++++|+.+|+++++.+|+++.++.++|.++..+|++++|+.++++++++
T Consensus 157 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 157 NAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C------CCCHHHHHHHHH
Q 043158 185 W------PSHSRALHVKNT 197 (1962)
Q Consensus 185 d------Pd~a~Al~lk~~ 197 (1962)
+ |++..++..+..
T Consensus 237 ~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 237 DAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHTTTTHHHHHHHHHH
T ss_pred ChhhcCCCchHHHHHHHHH
Confidence 9 887776655544
No 47
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.45 E-value=5.2e-13 Score=152.09 Aligned_cols=151 Identities=13% Similarity=-0.032 Sum_probs=138.2
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRC 109 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~ 109 (1962)
+..+..++..|..+++.|++++|+++|+++++..| + +..++.++|.++.+. |++++|+..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-------~-----------~~~a~~~la~~~~~~--g~~~~A~~~ 173 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-------Q-----------NGEIGLLLAETLIAL--NRSEDAEAV 173 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-------S-----------CHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-------c-----------chhHHHHHHHHHHHC--CCHHHHHHH
Confidence 56677889999999999999999999999998643 2 247899999999999 999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-
Q 043158 110 YLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSH- 188 (1962)
Q Consensus 110 y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~- 188 (1962)
|+++++.+|+....+.+.+..+...++.++|+..|+++++.+|+++.++.+||.++...|++++|+..++++++++|++
T Consensus 174 l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~ 253 (287)
T 3qou_A 174 LXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAA 253 (287)
T ss_dssp HTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGG
T ss_pred HHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc
Confidence 9999999998888888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred -HHHHHHHHHhhh
Q 043158 189 -SRALHVKNTIEE 200 (1962)
Q Consensus 189 -a~Al~lk~~I~~ 200 (1962)
+.++..+..+..
T Consensus 254 ~~~a~~~l~~~~~ 266 (287)
T 3qou_A 254 DGQTRXTFQEILA 266 (287)
T ss_dssp GGHHHHHHHHHHH
T ss_pred cchHHHHHHHHHH
Confidence 777777766644
No 48
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.44 E-value=2.2e-12 Score=130.69 Aligned_cols=142 Identities=18% Similarity=0.178 Sum_probs=131.4
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRC 109 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~ 109 (1962)
+..+..++..|..+...|++++|...|+++++..+ + ...++.++|.++... |++++|+.+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-------~-----------~~~~~~~~a~~~~~~--~~~~~A~~~ 98 (186)
T 3as5_A 39 AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-------D-----------NVKVATVLGLTYVQV--QKYDLAVPL 98 (186)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------T-----------CHHHHHHHHHHHHHH--TCHHHHHHH
T ss_pred ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-------C-----------CHHHHHHHHHHHHHh--cCHHHHHHH
Confidence 55678889999999999999999999999997532 1 136789999999999 899999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 043158 110 YLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHS 189 (1962)
Q Consensus 110 y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a 189 (1962)
|.+++..+|.++.+|+.+|.++...|++++|+.+|+++++.+|+++.++.++|.++..+|++++|+.+++++++++|++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 99 LIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGAS 178 (186)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred HH
Q 043158 190 RA 191 (1962)
Q Consensus 190 ~A 191 (1962)
.+
T Consensus 179 ~~ 180 (186)
T 3as5_A 179 VE 180 (186)
T ss_dssp GG
T ss_pred hh
Confidence 43
No 49
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.43 E-value=2.3e-12 Score=139.41 Aligned_cols=151 Identities=17% Similarity=0.073 Sum_probs=134.2
Q ss_pred ccc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHH
Q 043158 30 ESH-LTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALR 108 (1962)
Q Consensus 30 eee-AlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe 108 (1962)
+.. +..++..|..+...|++++|.+.|+++++..+ + ...+|.++|.++... |++++|++
T Consensus 33 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-------~-----------~~~~~~~la~~~~~~--~~~~~A~~ 92 (252)
T 2ho1_A 33 RDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP-------S-----------SADAHAALAVVFQTE--MEPKLADE 92 (252)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT-------T-----------CHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-------C-----------hHHHHHHHHHHHHHc--CCHHHHHH
Confidence 554 78899999999999999999999999997532 1 136788999999998 89999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 043158 109 CYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLL--CSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWP 186 (1962)
Q Consensus 109 ~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALe--LdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdP 186 (1962)
.|.+|++++|.++.+|+++|.++...|++++|+.+|++++. .+|+++.++.++|.++..+|++++|+.+++++++.+|
T Consensus 93 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 172 (252)
T 2ho1_A 93 EYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR 172 (252)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999 8888999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhh
Q 043158 187 SHSRALHVKNTIEE 200 (1962)
Q Consensus 187 d~a~Al~lk~~I~~ 200 (1962)
+++.++..++.+..
T Consensus 173 ~~~~~~~~la~~~~ 186 (252)
T 2ho1_A 173 NQPSVALEMADLLY 186 (252)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHH
Confidence 99888877766543
No 50
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.42 E-value=5e-13 Score=138.81 Aligned_cols=136 Identities=12% Similarity=0.154 Sum_probs=118.8
Q ss_pred HHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHH
Q 043158 43 KLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSV 122 (1962)
Q Consensus 43 L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~Dae 122 (1962)
+...|++++|+..|+++++..+ + ...+|.++|.++... |++++|+.+|.+|+.++|+++.
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p-------~-----------~~~~~~~lg~~~~~~--~~~~~A~~~~~~al~~~p~~~~ 79 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANP-------Q-----------NSEQWALLGEYYLWQ--NDYSNSLLAYRQALQLRGENAE 79 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCC-------S-----------CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHCSCHH
T ss_pred hhhccCHHHHHHHHHHHHHhCC-------C-----------cHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCCHH
Confidence 3457999999999999997543 1 246899999999999 9999999999999999999999
Q ss_pred HHHHHHHH-HHHcCCh--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 043158 123 VWNQLGTL-ACSMGLL--SISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSRALHVKNTI 198 (1962)
Q Consensus 123 aW~nLG~a-l~~LGr~--eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I 198 (1962)
+|+++|.+ +...|++ ++|+.+|+++++++|+++.++.++|.++..+|++++|+.+++++++++|+++....+...|
T Consensus 80 ~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i 158 (177)
T 2e2e_A 80 LYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESI 158 (177)
T ss_dssp HHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHH
Confidence 99999999 8899999 9999999999999999999999999999999999999999999999999987655555444
No 51
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.42 E-value=6.7e-13 Score=137.23 Aligned_cols=121 Identities=16% Similarity=0.191 Sum_probs=110.7
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRC 109 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~ 109 (1962)
++.+...|..|..+.+.|++++|++.|+++++..| + +..+|.++|.++... |++++|+.+
T Consensus 28 p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-------~-----------~~~a~~~lg~~~~~~--~~~~~A~~~ 87 (150)
T 4ga2_A 28 RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-------R-----------DPKAHRFLGLLYELE--ENTDKAVEC 87 (150)
T ss_dssp HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------T-----------CHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------C-----------CHHHHHHHHHHHHHc--CchHHHHHH
Confidence 56677889999999999999999999999998643 2 247899999999999 999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH-HHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 043158 110 YLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWA-FEQGLLCSPNNWNCMEKLLEVLIAIGD 170 (1962)
Q Consensus 110 y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~a-lErALeLdPd~~~Al~nLg~aL~~LGd 170 (1962)
|++|++++|+++++|+++|.++..+|++++|..+ +++|++++|+++.++..++.++...|+
T Consensus 88 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 88 YRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999999999887766 599999999999999999999988886
No 52
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.42 E-value=4.8e-12 Score=148.18 Aligned_cols=152 Identities=17% Similarity=0.169 Sum_probs=138.2
Q ss_pred CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHH
Q 043158 29 PESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALR 108 (1962)
Q Consensus 29 ~eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe 108 (1962)
.+..+..++..|..+.+.|++++|+..|+++++..| + ...+|.++|.++... |++++|+.
T Consensus 22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-------~-----------~~~~~~~l~~~~~~~--g~~~~A~~ 81 (450)
T 2y4t_A 22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-------D-----------NYIAYYRRATVFLAM--GKSKAALP 81 (450)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------T-----------CHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-------c-----------cHHHHHHHHHHHHHC--CCHHHHHH
Confidence 378889999999999999999999999999997532 1 247899999999999 99999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH---HHHHHH------------HHHHHHcCCHHH
Q 043158 109 CYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNW---NCMEKL------------LEVLIAIGDEVA 173 (1962)
Q Consensus 109 ~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~---~Al~nL------------g~aL~~LGdyee 173 (1962)
.|.+|++++|+++.+|+.+|.++..+|++++|+.+|+++++++|+++ .++..+ |.++...|++++
T Consensus 82 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 161 (450)
T 2y4t_A 82 DLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTA 161 (450)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999999999999999999999998 887666 666999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHhhh
Q 043158 174 CLSVAELILRHWPSHSRALHVKNTIEE 200 (1962)
Q Consensus 174 AL~~~~rALeLdPd~a~Al~lk~~I~~ 200 (1962)
|+.+++++++.+|+++.++..++.+..
T Consensus 162 A~~~~~~~~~~~~~~~~~~~~l~~~~~ 188 (450)
T 2y4t_A 162 AIAFLDKILEVCVWDAELRELRAECFI 188 (450)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 999999999999999998888877643
No 53
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.42 E-value=2.6e-12 Score=142.73 Aligned_cols=168 Identities=13% Similarity=0.044 Sum_probs=137.9
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCccc-chhc--c---CCCCCc-------hhhhHH---hHHHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIA-NAQA--A---DGKSSD-------GHLLQL---RFLALKNLAT 93 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk-~a~~--~---d~~~s~-------s~lLqL---~ylAykNLG~ 93 (1962)
+..+..++..|..+...|++++|+..|+++++..+.. .... + ...+.. ..++.. ...++.++|.
T Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~ 201 (330)
T 3hym_B 122 KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGV 201 (330)
T ss_dssp TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 5566778888888888888888888888888743211 0000 0 000000 111111 3578999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 043158 94 VFLQQGSSHYESALRCYLQAVEID---------TKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEV 164 (1962)
Q Consensus 94 lLl~~g~Gr~eEALe~y~rALaLD---------P~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~a 164 (1962)
++... |++++|+.+|.+|+.+. |.++.+|+++|.++..+|++++|+.+|+++++++|+++.++.++|.+
T Consensus 202 ~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 279 (330)
T 3hym_B 202 VAFQN--GEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYI 279 (330)
T ss_dssp HHHHT--TCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHH
T ss_pred HHHHc--ccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHH
Confidence 99999 99999999999999997 88899999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhh
Q 043158 165 LIAIGDEVACLSVAELILRHWPSHSRALHVKNTIE 199 (1962)
Q Consensus 165 L~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I~ 199 (1962)
+..+|++++|+.+++++++++|+++.++..++...
T Consensus 280 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 280 HSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence 99999999999999999999999999998887754
No 54
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.41 E-value=4.8e-12 Score=119.45 Aligned_cols=113 Identities=15% Similarity=0.122 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 043158 85 FLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEV 164 (1962)
Q Consensus 85 ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~a 164 (1962)
..++.++|..+... |++++|+.+|.+|+..+|+++.+|+++|.++..+|++++|+.+|++++..+|+++.++.++|.+
T Consensus 4 ~~~~~~~~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSV--GNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 46789999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhh
Q 043158 165 LIAIGDEVACLSVAELILRHWPSHSRALHVKNTIE 199 (1962)
Q Consensus 165 L~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I~ 199 (1962)
+..+|++++|..+++++++++|+++.++..++.+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 99999999999999999999999999888777653
No 55
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.41 E-value=4.1e-12 Score=138.18 Aligned_cols=133 Identities=15% Similarity=0.060 Sum_probs=120.4
Q ss_pred HCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 043158 45 QSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVW 124 (1962)
Q Consensus 45 qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW 124 (1962)
..|++++|+..|+++++..+..+ + -...+|.++|.++... |++++|+.+|.+|+.++|+++.+|
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~--~------------~~~~~~~~l~~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~ 80 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTD--D------------ERAQLLYERGVLYDSL--GLRALARNDFSQALAIRPDMPEVF 80 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCH--H------------HHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCCCCHHHH
T ss_pred ccchHHHHHHHHHHHHhcccccC--c------------hhHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHcCCCcHHHH
Confidence 45899999999999998632110 0 1357899999999999 999999999999999999999999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 043158 125 NQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSRALH 193 (1962)
Q Consensus 125 ~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~Al~ 193 (1962)
+++|.++...|++++|+.+|+++++++|+++.++.++|.++..+|++++|+.+++++++++|+++.+..
T Consensus 81 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 149 (275)
T 1xnf_A 81 NYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSL 149 (275)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999985443
No 56
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.41 E-value=1.3e-12 Score=134.57 Aligned_cols=109 Identities=17% Similarity=0.162 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 043158 85 FLALKNLATVFLQQGSSHYESALRCYLQAVEI------------------DTKDSVVWNQLGTLACSMGLLSISRWAFEQ 146 (1962)
Q Consensus 85 ylAykNLG~lLl~~g~Gr~eEALe~y~rALaL------------------DP~DaeaW~nLG~al~~LGr~eeAr~alEr 146 (1962)
...++++|..++.. |++++|+.+|.+|+.+ +|.++.+|+++|.++..+|++++|+.+|++
T Consensus 11 a~~~~~~G~~~~~~--~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 11 VEALRQKGNELFVQ--KDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 57899999999999 9999999999999999 788889999999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHH
Q 043158 147 GLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHS-RALHVK 195 (1962)
Q Consensus 147 ALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a-~Al~lk 195 (1962)
||+++|+++.+++++|.++..+|++++|+..|+++++++|+++ .....+
T Consensus 89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l 138 (162)
T 3rkv_A 89 VLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREM 138 (162)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999998 334333
No 57
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.40 E-value=6.8e-12 Score=142.61 Aligned_cols=102 Identities=18% Similarity=0.217 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 043158 85 FLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEV 164 (1962)
Q Consensus 85 ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~a 164 (1962)
..++.++|.++... |++++|+.+|.+|+.++|+++.+|+++|.++..+|++++|+.+|+++++++|+++.++.++|.+
T Consensus 217 ~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~ 294 (368)
T 1fch_A 217 PDVQCGLGVLFNLS--GEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGIS 294 (368)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 35666777777776 6777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCC
Q 043158 165 LIAIGDEVACLSVAELILRHWPSH 188 (1962)
Q Consensus 165 L~~LGdyeeAL~~~~rALeLdPd~ 188 (1962)
+..+|++++|+.+++++++++|++
T Consensus 295 ~~~~g~~~~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 295 CINLGAHREAVEHFLEALNMQRKS 318 (368)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCC
Confidence 777777777777777777776665
No 58
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.40 E-value=7.5e-13 Score=138.84 Aligned_cols=146 Identities=16% Similarity=0.066 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 043158 34 TQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQA 113 (1962)
Q Consensus 34 lalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rA 113 (1962)
..++..|..+.+.|++++|+..|+++++..| + +..+|.++|.++... |++++|+.+|+++
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-------~-----------~~~a~~~la~~~~~~--g~~~~A~~~~~~a 66 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQ-------S-----------RGDVKLAKADCLLET--KQFELAQELLATI 66 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHH-------T-----------SHHHHHHHHHHHHHT--TCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-------C-----------cHHHHHHHHHHHHHC--CCHHHHHHHHHHh
Confidence 3578899999999999999999999987532 2 247899999999999 9999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHH-HcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HH
Q 043158 114 VEIDTKDSVVWNQLGTLAC-SMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSH--SR 190 (1962)
Q Consensus 114 LaLDP~DaeaW~nLG~al~-~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~--a~ 190 (1962)
+.++| ++.++..+|.+.. ..+....|+.+|+++++++|+++.++.++|.++..+|++++|+..++++++++|++ +.
T Consensus 67 ~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 145 (176)
T 2r5s_A 67 PLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGE 145 (176)
T ss_dssp CGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTH
T ss_pred hhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHH
Confidence 99999 9988887776533 33445568999999999999999999999999999999999999999999999986 45
Q ss_pred HHHHHHHhhh
Q 043158 191 ALHVKNTIEE 200 (1962)
Q Consensus 191 Al~lk~~I~~ 200 (1962)
++..++.+..
T Consensus 146 a~~~l~~~~~ 155 (176)
T 2r5s_A 146 VKKTFMDILS 155 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777766533
No 59
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.40 E-value=4.8e-12 Score=145.05 Aligned_cols=144 Identities=13% Similarity=0.035 Sum_probs=87.4
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRC 109 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~ 109 (1962)
++.+..++..|..+.+.|++++|++.|++ +. ...++.++|.++... |++++|+..
T Consensus 98 P~~~~~~~~la~~~~~~g~~~~Al~~l~~----~~-------------------~~~~~~~l~~~~~~~--g~~~~A~~~ 152 (291)
T 3mkr_A 98 VTNTTFLLMAASIYFYDQNPDAALRTLHQ----GD-------------------SLECMAMTVQILLKL--DRLDLARKE 152 (291)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHTT----CC-------------------SHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHhC----CC-------------------CHHHHHHHHHHHHHC--CCHHHHHHH
Confidence 66778888889999999999999988887 21 123455556666655 556666666
Q ss_pred HHHHHHhCCCCHHHHHHHH--HHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 043158 110 YLQAVEIDTKDSVVWNQLG--TLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPS 187 (1962)
Q Consensus 110 y~rALaLDP~DaeaW~nLG--~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd 187 (1962)
|+++++.+|++.......| .++...|++++|+.+|+++++.+|+++.++.++|.++..+|++++|...++++++++|+
T Consensus 153 l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 153 LKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 6666666655543222222 22223355666666666666666666666666666666666666666666666666666
Q ss_pred CHHHHHHHHHh
Q 043158 188 HSRALHVKNTI 198 (1962)
Q Consensus 188 ~a~Al~lk~~I 198 (1962)
++.++..++.+
T Consensus 233 ~~~~l~~l~~~ 243 (291)
T 3mkr_A 233 HPETLINLVVL 243 (291)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 66555555443
No 60
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.39 E-value=1.9e-11 Score=132.16 Aligned_cols=149 Identities=18% Similarity=0.165 Sum_probs=97.7
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRC 109 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~ 109 (1962)
+..+..++..|..+...|++++|.+.|+++++..+ + ...++.++|.++... |++++|+.+
T Consensus 68 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-------~-----------~~~~~~~la~~~~~~--g~~~~A~~~ 127 (252)
T 2ho1_A 68 PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-------R-----------NARVLNNYGGFLYEQ--KRYEEAYQR 127 (252)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------T-----------CHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-------C-----------cHHHHHHHHHHHHHH--hHHHHHHHH
Confidence 66788889999999999999999999999997532 1 123455566666655 566666666
Q ss_pred HHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 043158 110 YLQAVE--IDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPS 187 (1962)
Q Consensus 110 y~rALa--LDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd 187 (1962)
|.+++. .+|.++.+|+++|.++...|++++|+.+|+++++.+|+++.++..+|.++..+|++++|+.+++++++.+|+
T Consensus 128 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 207 (252)
T 2ho1_A 128 LLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQ 207 (252)
T ss_dssp HHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCC
T ss_pred HHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 666666 555566666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CHHHHHHHHHh
Q 043158 188 HSRALHVKNTI 198 (1962)
Q Consensus 188 ~a~Al~lk~~I 198 (1962)
++.++..+..+
T Consensus 208 ~~~~~~~~~~~ 218 (252)
T 2ho1_A 208 NARSLLLGIRL 218 (252)
T ss_dssp CHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 55555554443
No 61
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.39 E-value=2.3e-12 Score=139.50 Aligned_cols=111 Identities=15% Similarity=0.164 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHcCChHHHHHHHHHHHh
Q 043158 86 LALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQ----------------LGTLACSMGLLSISRWAFEQGLL 149 (1962)
Q Consensus 86 lAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~n----------------LG~al~~LGr~eeAr~alErALe 149 (1962)
..+...|..+... |++++|+.+|.+|++++|+++++|+. +|.++..+|++++|+.+|+++++
T Consensus 5 ~~~~~~g~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 5 DEMLQKVSAAIEA--GQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5678899999999 99999999999999999999999999 99999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 043158 150 CSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSRALHVKNTI 198 (1962)
Q Consensus 150 LdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I 198 (1962)
++|+++.++.++|.++..+|++++|+.+|+++++++|+++.+++.++.+
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~ 131 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNY 131 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999888765
No 62
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.39 E-value=3.2e-12 Score=141.14 Aligned_cols=145 Identities=14% Similarity=0.091 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHH--------cCCCCHH
Q 043158 33 LTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQ--------QGSSHYE 104 (1962)
Q Consensus 33 AlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~--------~g~Gr~e 104 (1962)
+..+|..|..+.+.|++++|+..|+++++..|-.. . ...+++++|.++.. . |+++
T Consensus 52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~----~-----------~~~a~~~lg~~~~~~~~~~~~~~--~~~~ 114 (261)
T 3qky_A 52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDP----R-----------VPQAEYERAMCYYKLSPPYELDQ--TDTR 114 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT----T-----------HHHHHHHHHHHHHHHCCCTTSCC--HHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCc----h-----------hHHHHHHHHHHHHHhcccccccc--hhHH
Confidence 77889999999999999999999999998643110 0 23689999999999 8 8999
Q ss_pred HHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCChHHHHHHHHHHHhcCCC---CHHHHHHHHHH
Q 043158 105 SALRCYLQAVEIDTKDSVVW-----------------NQLGTLACSMGLLSISRWAFEQGLLCSPN---NWNCMEKLLEV 164 (1962)
Q Consensus 105 EALe~y~rALaLDP~DaeaW-----------------~nLG~al~~LGr~eeAr~alErALeLdPd---~~~Al~nLg~a 164 (1962)
+|+..|.+++..+|+++.++ +++|.++...|++++|+.+|+++++..|+ .+.++.++|.+
T Consensus 115 ~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~ 194 (261)
T 3qky_A 115 KAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRA 194 (261)
T ss_dssp HHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHH
Confidence 99999999999999998777 89999999999999999999999999999 56799999999
Q ss_pred HHHc----------CCHHHHHHHHHHHHHhCCCCHHHHHH
Q 043158 165 LIAI----------GDEVACLSVAELILRHWPSHSRALHV 194 (1962)
Q Consensus 165 L~~L----------GdyeeAL~~~~rALeLdPd~a~Al~l 194 (1962)
+..+ |++++|+..|+++++.+|+++.+...
T Consensus 195 ~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a 234 (261)
T 3qky_A 195 YIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTA 234 (261)
T ss_dssp HHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred HHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHH
Confidence 9988 99999999999999999999654433
No 63
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.39 E-value=2.9e-12 Score=149.79 Aligned_cols=156 Identities=16% Similarity=0.165 Sum_probs=130.9
Q ss_pred cCChhhhcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCC-CchhhhHHhHHHHHHHHHHHHHc
Q 043158 20 APTKEAQARPESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKS-SDGHLLQLRFLALKNLATVFLQQ 98 (1962)
Q Consensus 20 ~~TKEaQa~~eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~-s~s~lLqL~ylAykNLG~lLl~~ 98 (1962)
..+.+.. +..+..++..|..+.+.|++++|+..|+++++..+... .... .......+...+|.|+|.++...
T Consensus 137 ~~a~~~~---p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~----~~~~~~~~~~~~~~~~~~~nla~~~~~~ 209 (336)
T 1p5q_A 137 EMNSEEK---LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYES----SFSNEEAQKAQALRLASHLNLAMCHLKL 209 (336)
T ss_dssp GCCHHHH---HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCC----CCCSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCHHHH---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccc----cCChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3445556 77889999999999999999999999999998643110 0000 00111222468999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH-HH
Q 043158 99 GSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACL-SV 177 (1962)
Q Consensus 99 g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL-~~ 177 (1962)
|++++|+.+|.+|++++|+++.+|+++|.++..+|++++|+.+|++|++++|+++.++.+++.++..+|++++|. ..
T Consensus 210 --g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~ 287 (336)
T 1p5q_A 210 --QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKL 287 (336)
T ss_dssp --TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999994 46
Q ss_pred HHHHHHh
Q 043158 178 AELILRH 184 (1962)
Q Consensus 178 ~~rALeL 184 (1962)
|++++..
T Consensus 288 ~~~~~~~ 294 (336)
T 1p5q_A 288 YANMFER 294 (336)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6777654
No 64
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.39 E-value=5.2e-12 Score=137.77 Aligned_cols=150 Identities=16% Similarity=0.114 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 043158 33 LTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQ 112 (1962)
Q Consensus 33 AlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~r 112 (1962)
+..+|+.|..+.+.|++++|+..|+++++..|.... ...++.++|.++... |++++|+..|.+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~---------------~~~a~~~lg~~~~~~--~~~~~A~~~~~~ 66 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPY---------------SQQVQLDLIYAYYKN--ADLPLAQAAIDR 66 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTT---------------HHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH---------------HHHHHHHHHHHHHhc--CCHHHHHHHHHH
Confidence 467899999999999999999999999975331100 136899999999999 999999999999
Q ss_pred HHHhCCCCHH---HHHHHHHHHHH------------------cCChHHHHHHHHHHHhcCCCCHHHH-------------
Q 043158 113 AVEIDTKDSV---VWNQLGTLACS------------------MGLLSISRWAFEQGLLCSPNNWNCM------------- 158 (1962)
Q Consensus 113 ALaLDP~Dae---aW~nLG~al~~------------------LGr~eeAr~alErALeLdPd~~~Al------------- 158 (1962)
+++++|+++. +|+.+|.++.. .|++++|+..|+++++.+|+++.++
T Consensus 67 ~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~ 146 (225)
T 2yhc_A 67 FIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRL 146 (225)
T ss_dssp HHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHH
Confidence 9999999875 89999999886 6799999999999999999998665
Q ss_pred ----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHhh
Q 043158 159 ----EKLLEVLIAIGDEVACLSVAELILRHWPSHS---RALHVKNTIE 199 (1962)
Q Consensus 159 ----~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a---~Al~lk~~I~ 199 (1962)
..+|.++...|++.+|+..|+++++..|+.+ .++..++.+.
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~ 194 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAY 194 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHH
Confidence 5778899999999999999999999999986 4566665553
No 65
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.39 E-value=3.9e-12 Score=125.25 Aligned_cols=118 Identities=9% Similarity=0.034 Sum_probs=108.4
Q ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 043158 31 SHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCY 110 (1962)
Q Consensus 31 eeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y 110 (1962)
..+..+++.|..+.+.|++++|+..|+++++..| + ...+|.++|.++... |++++|+.+|
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-------~-----------~~~~~~~~a~~~~~~--~~~~~A~~~~ 61 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-------E-----------DARGYSNRAAALAKL--MSFPEAIADC 61 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------T-----------CHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-------C-----------ChHHHHHHHHHHHHh--cCHHHHHHHH
Confidence 4577899999999999999999999999998643 1 247899999999999 9999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHc
Q 043158 111 LQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCS------PNNWNCMEKLLEVLIAI 168 (1962)
Q Consensus 111 ~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLd------Pd~~~Al~nLg~aL~~L 168 (1962)
.+|++++|+++.+|+++|.++..+|++++|+.+|+++++++ |+++.++..++.+...+
T Consensus 62 ~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 62 NKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999 99999999998887654
No 66
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.38 E-value=3.8e-12 Score=123.33 Aligned_cols=114 Identities=17% Similarity=0.151 Sum_probs=109.0
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 043158 84 RFLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLE 163 (1962)
Q Consensus 84 ~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~ 163 (1962)
...+|+++|.++... |++++|+.+|.+|++.+|.++.+|+++|.++...|++++|+.+|+++++++|+++.++.++|.
T Consensus 15 ~~~~~~~~~~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQK--GDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHT--TCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 468899999999999 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhh
Q 043158 164 VLIAIGDEVACLSVAELILRHWPSHSRALHVKNTIE 199 (1962)
Q Consensus 164 aL~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I~ 199 (1962)
++..+|++++|+.+++++++++|++..++..++.+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 128 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCM 128 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 999999999999999999999999988888776653
No 67
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.38 E-value=7.4e-12 Score=126.17 Aligned_cols=135 Identities=13% Similarity=0.122 Sum_probs=120.5
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRC 109 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~ 109 (1962)
.+.+..++..|..+...|++++|...|+++++..+ + ...+|.++|.++... |++++|+.+
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-------~-----------~~~~~~~~a~~~~~~--~~~~~A~~~ 69 (166)
T 1a17_A 10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNP-------S-----------NAIYYGNRSLAYLRT--ECYGYALGD 69 (166)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-------T-----------CHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-------C-----------ChHHHHHHHHHHHHc--CCHHHHHHH
Confidence 34678899999999999999999999999998532 1 246799999999999 899999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHh
Q 043158 110 YLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLE--VLIAIGDEVACLSVAELILRH 184 (1962)
Q Consensus 110 y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~--aL~~LGdyeeAL~~~~rALeL 184 (1962)
|.+|+.++|+++.+|+++|.++..+|++++|+.+|+++++++|+++.++..++. .+...|++++|+..+.++..+
T Consensus 70 ~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 70 ATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 999999999999999999999999999999999999999999999999855554 488889999999998877654
No 68
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.38 E-value=4.7e-12 Score=124.91 Aligned_cols=101 Identities=11% Similarity=0.023 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 043158 85 FLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEV 164 (1962)
Q Consensus 85 ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~a 164 (1962)
..+|.++|.++... |++++|+.+|.+|+.++|+++.+|+++|.++..+|++++|+.+|+++++++|+++.++.++|.+
T Consensus 9 ~~~~~~~g~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVG--RKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 47899999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCC
Q 043158 165 LIAIGDEVACLSVAELILRHWPS 187 (1962)
Q Consensus 165 L~~LGdyeeAL~~~~rALeLdPd 187 (1962)
+..+|++++|+.+++++++++|+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHChh
Confidence 99999999999999999999887
No 69
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.38 E-value=1e-11 Score=135.06 Aligned_cols=137 Identities=14% Similarity=0.020 Sum_probs=112.5
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRC 109 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~ 109 (1962)
+..+..++..|..+...|++++|+..|+++++..+ + ...+|.++|.++... |++++|+.+
T Consensus 40 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-------~-----------~~~~~~~la~~~~~~--~~~~~A~~~ 99 (275)
T 1xnf_A 40 DERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-------D-----------MPEVFNYLGIYLTQA--GNFDAAYEA 99 (275)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-------C-----------CHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred chhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-------C-----------cHHHHHHHHHHHHHc--cCHHHHHHH
Confidence 45678889999999999999999999999998643 1 246899999999999 899999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 043158 110 YLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPS 187 (1962)
Q Consensus 110 y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd 187 (1962)
|.+|++++|+++.+|+++|.++..+|++++|+.+|+++++++|+++.....++.. ...|++++|+..+++++...|.
T Consensus 100 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~ 176 (275)
T 1xnf_A 100 FDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKSDK 176 (275)
T ss_dssp HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCc
Confidence 9999999999999999999999999999999999999999999987554444322 3445566665555555555443
No 70
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.38 E-value=7.1e-12 Score=149.84 Aligned_cols=146 Identities=12% Similarity=0.100 Sum_probs=106.7
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 043158 32 HLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYL 111 (1962)
Q Consensus 32 eAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~ 111 (1962)
.+..++..|..+...|++++|...|+++++..+. ..+|.++|.++... |++++|+.+|.
T Consensus 242 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-------------------~~~~~~l~~~~~~~--~~~~~A~~~~~ 300 (537)
T 3fp2_A 242 AALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-------------------PNSYIFLALTLADK--ENSQEFFKFFQ 300 (537)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------------------HHHHHHHHHHTCCS--SCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-------------------chHHHHHHHHHHHh--cCHHHHHHHHH
Confidence 3567888888999999999999999999986431 24566677776666 66777777777
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 043158 112 QAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSRA 191 (1962)
Q Consensus 112 rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~A 191 (1962)
+++.++|+++.+|+.+|.++...|++++|+.+|+++++++|+++.++.++|.++..+|++++|+..++++++.+|+++.+
T Consensus 301 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 380 (537)
T 3fp2_A 301 KAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEV 380 (537)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777666
Q ss_pred HHHHHHh
Q 043158 192 LHVKNTI 198 (1962)
Q Consensus 192 l~lk~~I 198 (1962)
+..++.+
T Consensus 381 ~~~l~~~ 387 (537)
T 3fp2_A 381 PTFFAEI 387 (537)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665544
No 71
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.36 E-value=1.7e-11 Score=117.40 Aligned_cols=114 Identities=14% Similarity=0.156 Sum_probs=108.8
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 043158 84 RFLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLE 163 (1962)
Q Consensus 84 ~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~ 163 (1962)
...++..+|..+... |++++|+..|.+++..+|+++.+|+++|.++...|++++|+.+|++++.++|+++.++.++|.
T Consensus 11 ~~~~~~~~~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKV--ENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHc--cCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 457899999999999 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhh
Q 043158 164 VLIAIGDEVACLSVAELILRHWPSHSRALHVKNTIE 199 (1962)
Q Consensus 164 aL~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I~ 199 (1962)
++..+|++++|+.+++++++++|+++.++..++.+.
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 124 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAE 124 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 999999999999999999999999998888776653
No 72
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.36 E-value=1.3e-11 Score=141.46 Aligned_cols=148 Identities=12% Similarity=0.050 Sum_probs=117.5
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRC 109 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~ 109 (1962)
+.....++..|..+.+.|++++|.+.|+++++..| +. .......+|.+++ ... |++++|+.+
T Consensus 127 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p-------~~------~~~~l~~a~~~l~---~~~--~~~~eA~~~ 188 (291)
T 3mkr_A 127 GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDE-------DA------TLTQLATAWVSLA---AGG--EKLQDAYYI 188 (291)
T ss_dssp CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TC------HHHHHHHHHHHHH---HCT--THHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc-------Cc------HHHHHHHHHHHHH---hCc--hHHHHHHHH
Confidence 35566777888889999999999999999987532 10 0000112333332 233 789999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhCCCC
Q 043158 110 YLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVA-CLSVAELILRHWPSH 188 (1962)
Q Consensus 110 y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyee-AL~~~~rALeLdPd~ 188 (1962)
|+++++.+|+++.+|+++|.++..+|++++|..+|+++++++|+++.++.++|.++..+|++.+ +..+++++++++|++
T Consensus 189 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~ 268 (291)
T 3mkr_A 189 FQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSH 268 (291)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999876 467889999999999
Q ss_pred HHHHHHH
Q 043158 189 SRALHVK 195 (1962)
Q Consensus 189 a~Al~lk 195 (1962)
+.+..+.
T Consensus 269 ~~~~d~~ 275 (291)
T 3mkr_A 269 PFIKEYR 275 (291)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 8665443
No 73
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.36 E-value=2.5e-11 Score=134.61 Aligned_cols=112 Identities=14% Similarity=0.123 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 043158 85 FLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEV 164 (1962)
Q Consensus 85 ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~a 164 (1962)
..++.++|.++... |++++|+.+|.++++.+|+++.+|+++|.++...|++++|+.+|+++++.+|+++.++.++|.+
T Consensus 172 ~~~~~~la~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 249 (327)
T 3cv0_A 172 AQLHASLGVLYNLS--NNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVS 249 (327)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 46788899999888 8899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHh
Q 043158 165 LIAIGDEVACLSVAELILRHWPS------------HSRALHVKNTI 198 (1962)
Q Consensus 165 L~~LGdyeeAL~~~~rALeLdPd------------~a~Al~lk~~I 198 (1962)
+..+|++++|+.+++++++++|+ ++.++..++.+
T Consensus 250 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 295 (327)
T 3cv0_A 250 YSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRML 295 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHH
Confidence 99999999999999999999888 56666666555
No 74
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.34 E-value=4.3e-12 Score=128.82 Aligned_cols=122 Identities=16% Similarity=0.091 Sum_probs=107.8
Q ss_pred CChhhhcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCC
Q 043158 21 PTKEAQARPESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGS 100 (1962)
Q Consensus 21 ~TKEaQa~~eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~ 100 (1962)
...++. ++.+..+|..|..+.+.|++++|+..|++++...| + ...+|.++|.++...
T Consensus 9 ~al~~~---p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-------~-----------~~~~~~~lg~~~~~~-- 65 (142)
T 2xcb_A 9 MLRGLS---EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH-------Y-----------DARYFLGLGACRQSL-- 65 (142)
T ss_dssp CCTTCC---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------T-----------CHHHHHHHHHHHHHT--
T ss_pred HHHcCC---HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-------c-----------cHHHHHHHHHHHHHH--
Confidence 334455 77889999999999999999999999999998643 1 246899999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 043158 101 SHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVL 165 (1962)
Q Consensus 101 Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL 165 (1962)
|++++|+.+|.+|+.++|+++.+|+++|.++..+|++++|+.+|+++++++|+++........+.
T Consensus 66 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 130 (142)
T 2xcb_A 66 GLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAG 130 (142)
T ss_dssp TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999987765554443
No 75
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.34 E-value=6.8e-12 Score=154.99 Aligned_cols=135 Identities=11% Similarity=0.026 Sum_probs=110.2
Q ss_pred CCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 043158 46 SKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWN 125 (1962)
Q Consensus 46 qGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~ 125 (1962)
.|++++|++.|+++++..+ + ...+|.++|.++... |++++|+++|++|++++|+++.+|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p-------~-----------~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~ 61 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP-------Q-----------DFVAWLMLADAELGM--GDTTAGEMAVQRGLALHPGHPEAVA 61 (568)
T ss_dssp --------------------------C-----------CHHHHHHHHHHHHHH--TCHHHHHHHHHHHHTTSTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC-------C-----------CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 4889999999999998643 1 246899999999999 8999999999999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhh
Q 043158 126 QLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSRALHVKNTIEE 200 (1962)
Q Consensus 126 nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I~~ 200 (1962)
++|.++..+|++++|+.+|+++++++|+++.++.++|.++..+|++++|+.+++++++++|+++.++..++.+..
T Consensus 62 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 136 (568)
T 2vsy_A 62 RLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRR 136 (568)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999988877754
No 76
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.34 E-value=2e-11 Score=136.52 Aligned_cols=148 Identities=14% Similarity=0.032 Sum_probs=86.1
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRC 109 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~ 109 (1962)
+..+..++..|..+...|++++|+..|+++++..|.. ..+|.++|.++... |++++|+..
T Consensus 34 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------------------~~~~~~l~~~~~~~--~~~~~A~~~ 93 (359)
T 3ieg_A 34 PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDF------------------TAARLQRGHLLLKQ--GKLDEAEDD 93 (359)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------------------HHHHHHHHHHHHHH--TCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc------------------chHHHHHHHHHHHc--CChHHHHHH
Confidence 5667788889999999999999999999999754311 13444555555555 455555555
Q ss_pred HHHHHHhCC---CCHHHHHHH------------HHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 043158 110 YLQAVEIDT---KDSVVWNQL------------GTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVAC 174 (1962)
Q Consensus 110 y~rALaLDP---~DaeaW~nL------------G~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeA 174 (1962)
|.+++.++| +++.+|..+ |.++...|++++|+.+|+++++.+|+++.++.++|.++..+|++++|
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 173 (359)
T 3ieg_A 94 FKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKA 173 (359)
T ss_dssp HHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHH
Confidence 555555555 455555444 34555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHH
Q 043158 175 LSVAELILRHWPSHSRALHVKNT 197 (1962)
Q Consensus 175 L~~~~rALeLdPd~a~Al~lk~~ 197 (1962)
+..++++++.+|+++.++..++.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~la~ 196 (359)
T 3ieg_A 174 ISDLKAASKLKSDNTEAFYKIST 196 (359)
T ss_dssp HHHHHHHHTTCSCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHH
Confidence 55555555555555544444433
No 77
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.34 E-value=6.1e-11 Score=131.53 Aligned_cols=98 Identities=15% Similarity=0.119 Sum_probs=67.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043158 101 SHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAEL 180 (1962)
Q Consensus 101 Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~r 180 (1962)
|++++|+..|.++++.+|.++.+|+.+|.++...|++++|+.+|+++++.+|+++.++.++|.++...|++++|+.++++
T Consensus 152 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 231 (327)
T 3cv0_A 152 NEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNR 231 (327)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34455555555666666666777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHhCCCCHHHHHHHHHh
Q 043158 181 ILRHWPSHSRALHVKNTI 198 (1962)
Q Consensus 181 ALeLdPd~a~Al~lk~~I 198 (1962)
+++.+|+++.++..++.+
T Consensus 232 a~~~~~~~~~~~~~l~~~ 249 (327)
T 3cv0_A 232 ALDINPGYVRVMYNMAVS 249 (327)
T ss_dssp HHHHCTTCHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHH
Confidence 777777776666666554
No 78
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.33 E-value=5.4e-11 Score=124.80 Aligned_cols=150 Identities=12% Similarity=0.013 Sum_probs=113.6
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRC 109 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~ 109 (1962)
+..+..++..|..+...|++++|.+.|+++++..+ + ...++.++|.++...+ |++++|+.+
T Consensus 39 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-------~-----------~~~~~~~l~~~~~~~~-~~~~~A~~~ 99 (225)
T 2vq2_A 39 PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-------D-----------SAEINNNYGWFLCGRL-NRPAESMAY 99 (225)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------T-----------CHHHHHHHHHHHHTTT-CCHHHHHHH
T ss_pred ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-------C-----------ChHHHHHHHHHHHHhc-CcHHHHHHH
Confidence 56677888899999999999999999999987543 1 1245677777776652 467777777
Q ss_pred HHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-
Q 043158 110 YLQAVE--IDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWP- 186 (1962)
Q Consensus 110 y~rALa--LDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdP- 186 (1962)
|.++++ .+|.++.+|+++|.++...|++++|+.+|+++++.+|+++.++..+|.++..+|++++|+.+++++++.+|
T Consensus 100 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 179 (225)
T 2vq2_A 100 FDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEV 179 (225)
T ss_dssp HHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCS
T ss_pred HHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 777777 66666777777787777778888887778777777777777777777777777888777777777777777
Q ss_pred CCHHHHHHHHHh
Q 043158 187 SHSRALHVKNTI 198 (1962)
Q Consensus 187 d~a~Al~lk~~I 198 (1962)
+++.++.....+
T Consensus 180 ~~~~~~~~~~~~ 191 (225)
T 2vq2_A 180 LQADDLLLGWKI 191 (225)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 777666555444
No 79
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.33 E-value=1.3e-11 Score=131.16 Aligned_cols=157 Identities=14% Similarity=0.090 Sum_probs=123.6
Q ss_pred CCcCChhhhcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCC--CchhhhHHhHHHHHHHHHHH
Q 043158 18 PLAPTKEAQARPESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKS--SDGHLLQLRFLALKNLATVF 95 (1962)
Q Consensus 18 ~~~~TKEaQa~~eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~--s~s~lLqL~ylAykNLG~lL 95 (1962)
..+-+.+-. +..+..++..|..+...|+|++|+..|+++++..+... +... .......+...+|.|+|.++
T Consensus 26 ~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~~~~~~~~~~~~la~~~ 98 (198)
T 2fbn_A 26 IYDYTDEEK---VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTE----EWDDQILLDKKKNIEISCNLNLATCY 98 (198)
T ss_dssp GGGCCHHHH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCT----TCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhCCHHHH---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccc----ccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 344556666 77889999999999999999999999999998643110 0000 00111222457899999999
Q ss_pred HHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 043158 96 LQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACL 175 (1962)
Q Consensus 96 l~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL 175 (1962)
... |++++|+.+|.+|++++|+++.+|+++|.++..+|++++|+.+|+++++++|+++.++.+++.++..+|++.++.
T Consensus 99 ~~~--~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 99 NKN--KDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHT--TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHh--cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999 999999999999999999999999999999999999999999999999999999999999999999999888877
Q ss_pred -HHHHHHHH
Q 043158 176 -SVAELILR 183 (1962)
Q Consensus 176 -~~~~rALe 183 (1962)
..+.+++.
T Consensus 177 ~~~~~~~f~ 185 (198)
T 2fbn_A 177 KLTFGGMFD 185 (198)
T ss_dssp ---------
T ss_pred HHHHHHHhc
Confidence 33344433
No 80
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.33 E-value=1.1e-11 Score=128.12 Aligned_cols=115 Identities=23% Similarity=0.195 Sum_probs=105.7
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRC 109 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~ 109 (1962)
...+..++..|..+.+.|++++|+..|+++++..+ + ...+|.++|.++... |++++|+.+
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-------~-----------~~~~~~~l~~~~~~~--g~~~~A~~~ 67 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-------A-----------NPIYLSNRAAAYSAS--GQHEKAAED 67 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-------T-----------CHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------c-----------CHHHHHHHHHHHHHc--cCHHHHHHH
Confidence 55778999999999999999999999999998643 1 247899999999999 999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 043158 110 YLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEV 164 (1962)
Q Consensus 110 y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~a 164 (1962)
|.+|++++|+++.+|+++|.++..+|++++|+.+|+++++++|+++.++.+++..
T Consensus 68 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 68 AELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988777744
No 81
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1.9e-11 Score=120.95 Aligned_cols=115 Identities=11% Similarity=0.094 Sum_probs=109.3
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHH
Q 043158 84 RFLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKD---SVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEK 160 (1962)
Q Consensus 84 ~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~D---aeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~n 160 (1962)
....++++|..+... |++++|+.+|.+|++++|++ +.+|+++|.++..+|++++|+.+|++++.++|+++.++.+
T Consensus 27 ~~~~~~~~a~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 27 SVEQLRKEGNELFKC--GDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CHHHHHHHHHHHHTT--TCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 357899999999999 99999999999999999998 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhh
Q 043158 161 LLEVLIAIGDEVACLSVAELILRHWPSHSRALHVKNTIEE 200 (1962)
Q Consensus 161 Lg~aL~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I~~ 200 (1962)
+|.++..+|++++|+.+++++++++|++..++..+..+..
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 9999999999999999999999999999998888777654
No 82
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.32 E-value=8.8e-12 Score=129.03 Aligned_cols=110 Identities=15% Similarity=0.077 Sum_probs=101.4
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRC 109 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~ 109 (1962)
++.+..++..|..+.+.|++++|+..|++++...| . +..+|.++|.++... |++++|+.+
T Consensus 18 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-------~-----------~~~~~~~lg~~~~~~--g~~~~A~~~ 77 (148)
T 2vgx_A 18 SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-------Y-----------DSRFFLGLGACRQAM--GQYDLAIHS 77 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------T-----------CHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-------c-----------cHHHHHHHHHHHHHH--hhHHHHHHH
Confidence 77888999999999999999999999999998643 1 247899999999999 999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHH
Q 043158 110 YLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCME 159 (1962)
Q Consensus 110 y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~ 159 (1962)
|++|++++|+++.+|+++|.++..+|++++|+.+|+++++++|+++....
T Consensus 78 ~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 78 YSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp HHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 99999999999999999999999999999999999999999999876643
No 83
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.32 E-value=2.1e-12 Score=138.74 Aligned_cols=128 Identities=10% Similarity=0.054 Sum_probs=105.7
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRC 109 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~ 109 (1962)
.+.|..+++.|..+.+.|+|++|++.|+++|+..|.. + +... .. ....+..+|.|+|.++..+ |++++|+.+
T Consensus 8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~---~-~~~a-~~-~~~~~a~a~~n~g~al~~L--gr~~eAl~~ 79 (159)
T 2hr2_A 8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTM---P-PEEA-FD-HAGFDAFCHAGLAEALAGL--RSFDEALHS 79 (159)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS---C-TTSC-CC-HHHHHHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCC---c-chhh-hh-hccchHHHHHHHHHHHHHC--CCHHHHHHH
Confidence 4578889999999999999999999999999864421 0 0000 00 0112456999999999999 999999999
Q ss_pred HHHHHHh-------CCCCHHHH----HHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 043158 110 YLQAVEI-------DTKDSVVW----NQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVL 165 (1962)
Q Consensus 110 y~rALaL-------DP~DaeaW----~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL 165 (1962)
|.+||++ +|+++.+| +++|.++..+|++++|+.+|++||+++|++......+..+.
T Consensus 80 ~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~ 146 (159)
T 2hr2_A 80 ADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMM 146 (159)
T ss_dssp HHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHH
T ss_pred HHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 9999999 99999999 99999999999999999999999999999877655554443
No 84
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.32 E-value=4.5e-11 Score=113.59 Aligned_cols=113 Identities=21% Similarity=0.283 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 043158 85 FLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEV 164 (1962)
Q Consensus 85 ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~a 164 (1962)
..+|.++|.++... |++++|+..|.+++..+|+++.+|+.+|.++...|++++|+.+|++++..+|+++.++.++|.+
T Consensus 9 ~~~~~~~~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQ--GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 46789999999999 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhh
Q 043158 165 LIAIGDEVACLSVAELILRHWPSHSRALHVKNTIE 199 (1962)
Q Consensus 165 L~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I~ 199 (1962)
+..+|++++|+.+++++++.+|+++.++..++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 121 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 99999999999999999999999999888776653
No 85
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.32 E-value=3.1e-11 Score=121.66 Aligned_cols=112 Identities=16% Similarity=0.167 Sum_probs=106.2
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 043158 84 RFLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLE 163 (1962)
Q Consensus 84 ~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~ 163 (1962)
...+|.++|..+... |++++|+..|.+|++++|.++.+|+++|.++..+|++++|+.+|+++++++|+++.++.++|.
T Consensus 12 ~~~~~~~~a~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~ 89 (166)
T 1a17_A 12 RAEELKTQANDYFKA--KDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 357899999999999 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 043158 164 VLIAIGDEVACLSVAELILRHWPSHSRALHVKNT 197 (1962)
Q Consensus 164 aL~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~ 197 (1962)
++..+|++++|+.+++++++++|++..++.....
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~ 123 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE 123 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 9999999999999999999999999887755443
No 86
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.32 E-value=2e-11 Score=117.00 Aligned_cols=122 Identities=14% Similarity=0.175 Sum_probs=113.1
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRC 109 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~ 109 (1962)
+..+..++..|..+...|++++|...|+++++..+ + ...++.++|.++... |++++|+.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-------~-----------~~~~~~~~a~~~~~~--~~~~~A~~~ 68 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNP-------A-----------NAVYFCNRAAAYSKL--GNYAGAVQD 68 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------T-----------CHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-------C-----------CHHHHHHHHHHHHHh--hchHHHHHH
Confidence 56778899999999999999999999999997532 1 136789999999999 899999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 043158 110 YLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDE 171 (1962)
Q Consensus 110 y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdy 171 (1962)
|.+++.++|+++.+|+++|.++..+|++++|+.+|+++++++|+++.++..++.++..+|++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 69 CERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999875
No 87
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.32 E-value=1.7e-11 Score=118.66 Aligned_cols=121 Identities=10% Similarity=0.068 Sum_probs=111.9
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRC 109 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~ 109 (1962)
+..+.+++..|..+...|++++|...|+++++..+ + ...++.++|.++... |++++|+.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-------~-----------~~~~~~~la~~~~~~--~~~~~A~~~ 72 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-------K-----------DAKLYSNRAACYTKL--LEFQLALKD 72 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-------T-----------CHHHHHHHHHHHTTT--TCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-------C-----------cHHHHHHHHHHHHHh--ccHHHHHHH
Confidence 55678899999999999999999999999998643 1 246899999999998 899999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 043158 110 YLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGD 170 (1962)
Q Consensus 110 y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGd 170 (1962)
|.+|+.++|+++.+|+++|.++..+|++++|+.+|+++++++|++..++..++.++..+|+
T Consensus 73 ~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 73 CEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999988775
No 88
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.32 E-value=1.7e-11 Score=143.26 Aligned_cols=115 Identities=17% Similarity=0.152 Sum_probs=109.9
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 043158 84 RFLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKD---------------SVVWNQLGTLACSMGLLSISRWAFEQGL 148 (1962)
Q Consensus 84 ~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~D---------------aeaW~nLG~al~~LGr~eeAr~alErAL 148 (1962)
...+|+++|.++... |++++|+.+|.+|++++|++ +.+|+++|.++..+|++++|+.+|++||
T Consensus 146 ~a~~~~~~g~~~~~~--g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 146 QSTIVKERGTVYFKE--GKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 467999999999999 99999999999999999999 7999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhh
Q 043158 149 LCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSRALHVKNTIEE 200 (1962)
Q Consensus 149 eLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I~~ 200 (1962)
+++|+++.+++++|.++..+|++++|+.+|++|++++|+++.++..++.+..
T Consensus 224 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 224 ELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999888877643
No 89
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.31 E-value=3.1e-11 Score=146.89 Aligned_cols=167 Identities=13% Similarity=0.029 Sum_probs=100.2
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccc-hhc--cC---CCCCc-------hhhhHH---hHHHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIAN-AQA--AD---GKSSD-------GHLLQL---RFLALKNLAT 93 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~-a~~--~d---~~~s~-------s~lLqL---~ylAykNLG~ 93 (1962)
+..+..++..|..+.+.|++++|.+.|+++++..+... ... +. ..+.. ..++.. ...+|.++|.
T Consensus 370 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 449 (597)
T 2xpi_A 370 PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGM 449 (597)
T ss_dssp TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 66778888888899999999999999999887432110 000 00 00000 011111 1245566666
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc------CCCC-HHHHHHHHHHHH
Q 043158 94 VFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLC------SPNN-WNCMEKLLEVLI 166 (1962)
Q Consensus 94 lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeL------dPd~-~~Al~nLg~aL~ 166 (1962)
++... |++++|++.|.++++++|.++.+|+.+|.++...|++++|+..|+++++. +|+. ..++.++|.++.
T Consensus 450 ~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~ 527 (597)
T 2xpi_A 450 QHMQL--GNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYR 527 (597)
T ss_dssp HHHHH--TCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHH
T ss_pred HHHHc--CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHH
Confidence 66666 56666666666666666666666666666666666666666666666665 4443 556666666666
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 043158 167 AIGDEVACLSVAELILRHWPSHSRALHVKNTI 198 (1962)
Q Consensus 167 ~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I 198 (1962)
..|++++|+..++++++++|+++.++..++.+
T Consensus 528 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 559 (597)
T 2xpi_A 528 KLKMYDAAIDALNQGLLLSTNDANVHTAIALV 559 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 66666666666666666666666655555544
No 90
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.31 E-value=8e-12 Score=128.76 Aligned_cols=138 Identities=9% Similarity=0.003 Sum_probs=109.9
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccch--hccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANA--QAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESAL 107 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a--~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEAL 107 (1962)
...+..+.+.|..+.+.|+|++|+..|++++..-+.... .+ .. ............+|.|+|.++... |++++|+
T Consensus 8 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~nla~~~~~~--~~~~~A~ 83 (162)
T 3rkv_A 8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKP-GE-PEWVELDRKNIPLYANMSQCYLNI--GDLHEAE 83 (162)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCT-TS-HHHHHHHHTHHHHHHHHHHHHHHH--TCHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCC-CH-HHHHHHHHHHHHHHHHHHHHHHhc--CcHHHHH
Confidence 456788999999999999999999999999985110000 00 00 000001122568899999999999 9999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCCH
Q 043158 108 RCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNW-NCMEKLLEVLIAIGDE 171 (1962)
Q Consensus 108 e~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~-~Al~nLg~aL~~LGdy 171 (1962)
.+|.+|+.++|+++.+|+++|.++..+|++++|+.+|++|++++|+++ .+...++.+...++++
T Consensus 84 ~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~ 148 (162)
T 3rkv_A 84 ETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEK 148 (162)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999 5567777666555443
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.31 E-value=1e-11 Score=141.16 Aligned_cols=145 Identities=14% Similarity=0.023 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHH-cCCCCHHHHHHHHH
Q 043158 33 LTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQ-QGSSHYESALRCYL 111 (1962)
Q Consensus 33 AlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~-~g~Gr~eEALe~y~ 111 (1962)
+..+.+.|..+...|++++|+.+|+++++..+ ..++ ......+|.|+|.++.. . |++++|+.+|+
T Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~----~~g~--------~~~~a~~~~~lg~~~~~~l--g~~~~A~~~~~ 142 (292)
T 1qqe_A 77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFT----HRGQ--------FRRGANFKFELGEILENDL--HDYAKAIDCYE 142 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----HTTC--------HHHHHHHHHHHHHHHHHTT--CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH----HcCC--------HHHHHHHHHHHHHHHHHhh--cCHHHHHHHHH
Confidence 55666777778888999999999999887521 0000 00024689999999999 6 79999999999
Q ss_pred HHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHH-------HHHHHHHHHHHcCCHHHHHHHH
Q 043158 112 QAVEIDTKD------SVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWN-------CMEKLLEVLIAIGDEVACLSVA 178 (1962)
Q Consensus 112 rALaLDP~D------aeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~-------Al~nLg~aL~~LGdyeeAL~~~ 178 (1962)
+|+++.|.+ +.++.++|.++..+|++++|+.+|+++++++|++.. ++.++|.++..+|++++|+.+|
T Consensus 143 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 222 (292)
T 1qqe_A 143 LAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTL 222 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999875 678999999999999999999999999999998754 6899999999999999999999
Q ss_pred HHHHHhCCCCHHH
Q 043158 179 ELILRHWPSHSRA 191 (1962)
Q Consensus 179 ~rALeLdPd~a~A 191 (1962)
+++++++|++..+
T Consensus 223 ~~al~l~p~~~~~ 235 (292)
T 1qqe_A 223 QEGQSEDPNFADS 235 (292)
T ss_dssp HGGGCC-------
T ss_pred HHHHhhCCCCCCc
Confidence 9999999997654
No 92
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.31 E-value=2.6e-11 Score=118.40 Aligned_cols=111 Identities=14% Similarity=0.154 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHHHHH
Q 043158 87 ALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDS---VVWNQLGTLACSMGLLSISRWAFEQGLLCSPNN---WNCMEK 160 (1962)
Q Consensus 87 AykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~Da---eaW~nLG~al~~LGr~eeAr~alErALeLdPd~---~~Al~n 160 (1962)
+++++|..+... |++++|+..|.+++..+|+++ .+|+.+|.++..+|++++|+.+|++++..+|++ +.++.+
T Consensus 4 ~~~~~a~~~~~~--~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (129)
T 2xev_A 4 TAYNVAFDALKN--GKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLK 81 (129)
T ss_dssp CHHHHHHHHHHT--TCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHH
T ss_pred HHHHHHHHHHHh--CCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHH
Confidence 478899999999 899999999999999999999 899999999999999999999999999999999 899999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhh
Q 043158 161 LLEVLIAIGDEVACLSVAELILRHWPSHSRALHVKNTIE 199 (1962)
Q Consensus 161 Lg~aL~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I~ 199 (1962)
+|.++..+|++++|+..++++++..|+++.+...+..+.
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 120 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQ 120 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 999999999999999999999999999988777666553
No 93
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.31 E-value=5.4e-11 Score=139.28 Aligned_cols=159 Identities=12% Similarity=0.022 Sum_probs=123.6
Q ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhH-HhHHHHHHHHHHHHHcCCCCHHHHHHH
Q 043158 31 SHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQ-LRFLALKNLATVFLQQGSSHYESALRC 109 (1962)
Q Consensus 31 eeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLq-L~ylAykNLG~lLl~~g~Gr~eEALe~ 109 (1962)
..+..++..|..+...|++++|+..|++++...+...... ..+.. .....+.++|.++... |++++|+.+
T Consensus 209 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~--g~~~~A~~~ 279 (450)
T 2y4t_A 209 DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCF-------AHYKQVKKLNKLIESAEELIRD--GRYTDATSK 279 (450)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH-------HHHHHHHHHHHHHHHHHHHHHH--TCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHH-------HHHHHHHHHHHHHHHHHHHHHc--CCHHHHHHH
Confidence 3444555555555566666666666666654322000000 00000 0233456679999999 899999999
Q ss_pred HHHHHHhCCCCHH----HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 043158 110 YLQAVEIDTKDSV----VWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHW 185 (1962)
Q Consensus 110 y~rALaLDP~Dae----aW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLd 185 (1962)
|.+++.++|+++. +|.++|.++..+|++++|+..|+++++++|+++.++.++|.++..+|++++|+.+++++++++
T Consensus 280 ~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 359 (450)
T 2y4t_A 280 YESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN 359 (450)
T ss_dssp HHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 9999999999954 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHh
Q 043158 186 PSHSRALHVKNTI 198 (1962)
Q Consensus 186 Pd~a~Al~lk~~I 198 (1962)
|+++.++..++.+
T Consensus 360 p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 360 ENDQQIREGLEKA 372 (450)
T ss_dssp SSCHHHHHHHHHH
T ss_pred cchHHHHHHHHHH
Confidence 9999988887754
No 94
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.30 E-value=1.3e-11 Score=140.29 Aligned_cols=147 Identities=10% Similarity=-0.005 Sum_probs=124.2
Q ss_pred cccHHHHHHHHHH-HHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHH
Q 043158 30 ESHLTQTYHEGLL-KLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALR 108 (1962)
Q Consensus 30 eeeAlalYqkAL~-L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe 108 (1962)
.++|...|++|.. +...|++++|+++|+++++... ..++ . .-...+|.|+|.++... |++++|+.
T Consensus 33 ~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~----~~~~-----~---~~~a~~~~~lg~~~~~~--g~~~~A~~ 98 (292)
T 1qqe_A 33 FEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQK----KAGN-----E---DEAGNTYVEAYKCFKSG--GNSVNAVD 98 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHH----HTTC-----H---HHHHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH----HhCC-----H---HHHHHHHHHHHHHHHHC--CCHHHHHH
Confidence 5678888888765 5567999999999999997521 0000 0 00246899999999999 99999999
Q ss_pred HHHHHHHhCCCC------HHHHHHHHHHHHHc-CChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHH
Q 043158 109 CYLQAVEIDTKD------SVVWNQLGTLACSM-GLLSISRWAFEQGLLCSPNN------WNCMEKLLEVLIAIGDEVACL 175 (1962)
Q Consensus 109 ~y~rALaLDP~D------aeaW~nLG~al~~L-Gr~eeAr~alErALeLdPd~------~~Al~nLg~aL~~LGdyeeAL 175 (1962)
+|.+|+++.|.. +.+|.++|.++... |++++|+.+|++|+++.|+. ..++.++|.++..+|++++|+
T Consensus 99 ~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 178 (292)
T 1qqe_A 99 SLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEAS 178 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 999999998864 67999999999995 99999999999999999865 567999999999999999999
Q ss_pred HHHHHHHHhCCCCHH
Q 043158 176 SVAELILRHWPSHSR 190 (1962)
Q Consensus 176 ~~~~rALeLdPd~a~ 190 (1962)
.+|++++++.|++..
T Consensus 179 ~~~~~al~~~~~~~~ 193 (292)
T 1qqe_A 179 DIYSKLIKSSMGNRL 193 (292)
T ss_dssp HHHHHHHHTTSSCTT
T ss_pred HHHHHHHHHHhcCCc
Confidence 999999999988753
No 95
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.30 E-value=4e-12 Score=136.37 Aligned_cols=99 Identities=10% Similarity=0.066 Sum_probs=91.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-
Q 043158 101 SHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLL----------SISRWAFEQGLLCSPNNWNCMEKLLEVLIAIG- 169 (1962)
Q Consensus 101 Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~----------eeAr~alErALeLdPd~~~Al~nLg~aL~~LG- 169 (1962)
+++++|+.+|++|++++|+++++|+++|.++..+|++ ++|+.+|++||+++|+++.+|++||.+|..+|
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~ 95 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF 95 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcc
Confidence 5699999999999999999999999999999999886 59999999999999999999999999999885
Q ss_pred ----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHhh
Q 043158 170 ----------DEVACLSVAELILRHWPSHSRALHVKNTIE 199 (1962)
Q Consensus 170 ----------dyeeAL~~~~rALeLdPd~a~Al~lk~~I~ 199 (1962)
++++|+.+|++|++++|++...+..+....
T Consensus 96 l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ 135 (158)
T 1zu2_A 96 LTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA 135 (158)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 899999999999999999987776666553
No 96
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.30 E-value=3.6e-11 Score=146.37 Aligned_cols=169 Identities=17% Similarity=0.083 Sum_probs=141.4
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccc-hhc---------cCC---CCCchhhhHH---hHHHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIAN-AQA---------ADG---KSSDGHLLQL---RFLALKNLAT 93 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~-a~~---------~d~---~~s~s~lLqL---~ylAykNLG~ 93 (1962)
+.....++..|..+.+.|++++|++.|+++++..+... ... ++. ......++.+ ...+|.++|.
T Consensus 404 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 483 (597)
T 2xpi_A 404 PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGV 483 (597)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 66778889999999999999999999999987543111 000 000 0011112221 3578999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHh------CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 043158 94 VFLQQGSSHYESALRCYLQAVEI------DTKD-SVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLI 166 (1962)
Q Consensus 94 lLl~~g~Gr~eEALe~y~rALaL------DP~D-aeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~ 166 (1962)
++... |++++|++.|.+++++ +|++ +.+|..+|.++...|++++|+..|+++++++|+++.++..+|.++.
T Consensus 484 ~~~~~--g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 561 (597)
T 2xpi_A 484 VAFNK--SDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYL 561 (597)
T ss_dssp HHHHT--TCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred HHHHh--CCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 99999 9999999999999999 7775 8999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhh
Q 043158 167 AIGDEVACLSVAELILRHWPSHSRALHVKNTIEE 200 (1962)
Q Consensus 167 ~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I~~ 200 (1962)
..|++++|..+++++++++|+++.++..++.+..
T Consensus 562 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 562 HKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 9999999999999999999999999998887643
No 97
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.29 E-value=3.6e-12 Score=149.25 Aligned_cols=164 Identities=11% Similarity=0.042 Sum_probs=98.2
Q ss_pred cCChhhhcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcC
Q 043158 20 APTKEAQARPESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQG 99 (1962)
Q Consensus 20 ~~TKEaQa~~eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g 99 (1962)
+.+.+-. +..+..++..|..+.+.|+|++|+..|+++++..+...... ...........+...+|.|+|.++..+
T Consensus 169 ~~~~~~~---~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~-~~~~~~~~~~~l~~~~~~nla~~~~~~- 243 (338)
T 2if4_A 169 DMTVEER---IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQ-LYGKYQDMALAVKNPCHLNIAACLIKL- 243 (338)
T ss_dssp BCCHHHH---HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHT-CCHHHHHHHHHHHTHHHHHHHHHHHTT-
T ss_pred cCCHHHH---HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhh-hcccHHHHHHHHHHHHHHHHHHHHHHc-
Confidence 3344444 66888999999999999999999999999998543110000 000000111222345899999999999
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHcCCHHHHHHHH
Q 043158 100 SSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVL-IAIGDEVACLSVA 178 (1962)
Q Consensus 100 ~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL-~~LGdyeeAL~~~ 178 (1962)
|++++|+.+|.+||+++|+++.+|+++|.++..+|++++|+.+|++|++++|+++.++.+|+.+. ...++.+.+...|
T Consensus 244 -g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~ 322 (338)
T 2if4_A 244 -KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMY 322 (338)
T ss_dssp -TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------
T ss_pred -CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999884 4557788888899
Q ss_pred HHHHHhCCCCH
Q 043158 179 ELILRHWPSHS 189 (1962)
Q Consensus 179 ~rALeLdPd~a 189 (1962)
++++...|+++
T Consensus 323 ~~~l~~~p~~~ 333 (338)
T 2if4_A 323 KGIFKGKDEGG 333 (338)
T ss_dssp -----------
T ss_pred HHhhCCCCCCC
Confidence 99999999876
No 98
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.29 E-value=3.6e-11 Score=127.87 Aligned_cols=114 Identities=12% Similarity=-0.034 Sum_probs=108.2
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHcCChHHHHHHHHHH
Q 043158 84 RFLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDS----------------VVWNQLGTLACSMGLLSISRWAFEQG 147 (1962)
Q Consensus 84 ~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~Da----------------eaW~nLG~al~~LGr~eeAr~alErA 147 (1962)
....+.++|..+... |++++|+.+|.+|+.+.|.++ .+|+++|.++..+|++++|+.+|+++
T Consensus 37 ~~~~~~~~g~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 114 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKK--NEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV 114 (198)
T ss_dssp HHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 357899999999999 899999999999999999998 99999999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhh
Q 043158 148 LLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSRALHVKNTIE 199 (1962)
Q Consensus 148 LeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I~ 199 (1962)
++++|+++.++.++|.++..+|++++|+.+|+++++++|+++.++..++.+.
T Consensus 115 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 115 LKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 166 (198)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998887776653
No 99
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.29 E-value=8.1e-11 Score=140.75 Aligned_cols=210 Identities=10% Similarity=0.045 Sum_probs=152.3
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRC 109 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~ 109 (1962)
.+.+..++..|..+.+.|++++|+..|+++++..| + ...+|.++|.++... |++++|+..
T Consensus 22 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-------~-----------~~~~~~~la~~~~~~--g~~~~A~~~ 81 (537)
T 3fp2_A 22 QAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-------N-----------EPVFYSNISACYIST--GDLEKVIEF 81 (537)
T ss_dssp HHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-------T-----------CHHHHHHHHHHHHHH--TCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-------C-----------CcHHHHHHHHHHHHc--CCHHHHHHH
Confidence 55788999999999999999999999999998643 1 247899999999999 899999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH---------------------------------------------
Q 043158 110 YLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAF--------------------------------------------- 144 (1962)
Q Consensus 110 y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~al--------------------------------------------- 144 (1962)
|.+|++++|+++.+|+.+|.++..+|++++|+..|
T Consensus 82 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~ 161 (537)
T 3fp2_A 82 TTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVL 161 (537)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCC
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccc
Confidence 99999999999999999999999999988887655
Q ss_pred ----------------------------------------------------------------HHHHhcCCCCHH----
Q 043158 145 ----------------------------------------------------------------EQGLLCSPNNWN---- 156 (1962)
Q Consensus 145 ----------------------------------------------------------------ErALeLdPd~~~---- 156 (1962)
+++++.+|+++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~ 241 (537)
T 3fp2_A 162 PSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLREN 241 (537)
T ss_dssp CCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHH
T ss_pred chHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHH
Confidence 445556677654
Q ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhhcCCCCCCCCCcc----------ccCccchhhHH
Q 043158 157 ---CMEKLLEVLIAIGDEVACLSVAELILRHWPSHSRALHVKNTIEETEPVPYAPRGID----------KLEPKHVRLKF 223 (1962)
Q Consensus 157 ---Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I~~adP~~f~P~~~d----------aL~p~~~~L~~ 223 (1962)
++..+|.++...|++++|+..++++++++|+ +.++..++.+.... +..+ .+.|.+.....
T Consensus 242 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~------~~~~~A~~~~~~~~~~~~~~~~~~~ 314 (537)
T 3fp2_A 242 AALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADK------ENSQEFFKFFQKAVDLNPEYPPTYY 314 (537)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCS------SCCHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHh------cCHHHHHHHHHHHhccCCCCHHHHH
Confidence 4677778888889999999999999999999 88888777764311 1111 11233322222
Q ss_pred HHhh-hHHhhhhhhhhhhhccccccccccC-hhhHHHHHHHHHHHhC
Q 043158 224 IDKR-KAAAEILDEGVVCKKLNQNIELCLA-ESSWAALADTLLDILC 268 (1962)
Q Consensus 224 i~kr-k~ed~~~dEAle~Rk~~~al~L~l~-~~SW~~LG~SLL~Ll~ 268 (1962)
..+. ......+++|... ..+++.+.+. ...|..+|..+.....
T Consensus 315 ~l~~~~~~~~~~~~A~~~--~~~a~~~~~~~~~~~~~la~~~~~~g~ 359 (537)
T 3fp2_A 315 HRGQMYFILQDYKNAKED--FQKAQSLNPENVYPYIQLACLLYKQGK 359 (537)
T ss_dssp HHHHHHHHTTCHHHHHHH--HHHHHHHCTTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCCHHHHHHH--HHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 2221 1111145555443 3445555555 5678888888875543
No 100
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.28 E-value=1.8e-11 Score=139.36 Aligned_cols=135 Identities=14% Similarity=0.017 Sum_probs=121.8
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRC 109 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~ 109 (1962)
++.+..++..|..+.+.|++++|++.|++++...| + ....+.+.+..+... ++.++|++.
T Consensus 148 P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p-------~-----------~~~~~~~~~~~l~~~--~~~~~a~~~ 207 (287)
T 3qou_A 148 NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ-------D-----------TRYQGLVAQIELLXQ--AADTPEIQQ 207 (287)
T ss_dssp TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC-------S-----------HHHHHHHHHHHHHHH--HTSCHHHHH
T ss_pred CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc-------c-----------hHHHHHHHHHHHHhh--cccCccHHH
Confidence 77888889999999999999999999999987543 1 124456777777777 789999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 043158 110 YLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNN--WNCMEKLLEVLIAIGDEVACLSVAELILRH 184 (1962)
Q Consensus 110 y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~--~~Al~nLg~aL~~LGdyeeAL~~~~rALeL 184 (1962)
|++|++++|+++++|+++|.++...|++++|+..|+++++.+|++ ..++.+|+.++..+|+.++|...|++++..
T Consensus 208 l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 208 LQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 899999999999999999999999999863
No 101
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.27 E-value=1.6e-11 Score=115.16 Aligned_cols=102 Identities=13% Similarity=0.131 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--CHHHHHHHHH
Q 043158 86 LALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPN--NWNCMEKLLE 163 (1962)
Q Consensus 86 lAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd--~~~Al~nLg~ 163 (1962)
.+|.++|.++... |++++|+.+|.+|++++|.++.+|+++|.++..+|++++|+.+|+++++++|+ ++.++.++|.
T Consensus 7 ~~~~~~~~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDA--GNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSS--CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--hhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 4678899999998 89999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHHc-CCHHHHHHHHHHHHHhCCCCH
Q 043158 164 VLIAI-GDEVACLSVAELILRHWPSHS 189 (1962)
Q Consensus 164 aL~~L-GdyeeAL~~~~rALeLdPd~a 189 (1962)
++..+ |++++|+.++++++...|+++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 99999 999999999999999999864
No 102
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.27 E-value=2.2e-11 Score=127.63 Aligned_cols=138 Identities=16% Similarity=0.065 Sum_probs=115.2
Q ss_pred ChhhhcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHH-HHcCC
Q 043158 22 TKEAQARPESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVF-LQQGS 100 (1962)
Q Consensus 22 TKEaQa~~eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lL-l~~g~ 100 (1962)
..+.. +..+..++..|..+.+.|++++|+..|++++...| . + ..+..+|.+. ...
T Consensus 32 al~~~---P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~-~-----------------~~~~~~~~~~~~~~-- 87 (176)
T 2r5s_A 32 LSDEL---QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-D-N-----------------SYKSLIAKLELHQQ-- 87 (176)
T ss_dssp SCHHH---HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-C-H-----------------HHHHHHHHHHHHHH--
T ss_pred HHHHC---CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-C-h-----------------HHHHHHHHHHHHhh--
Confidence 34556 78889999999999999999999999999987643 1 1 1122233332 222
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHHHHHHHH
Q 043158 101 SHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNN--WNCMEKLLEVLIAIGDEVACLSVA 178 (1962)
Q Consensus 101 Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~--~~Al~nLg~aL~~LGdyeeAL~~~ 178 (1962)
++..+|+.+|++|++++|+++.+|+++|.++...|++++|+.+|+++++++|++ +.++.++|.++..+|+.++|+.+|
T Consensus 88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 234468999999999999999999999999999999999999999999999987 569999999999999999999999
Q ss_pred HHHHH
Q 043158 179 ELILR 183 (1962)
Q Consensus 179 ~rALe 183 (1962)
+++|.
T Consensus 168 ~~al~ 172 (176)
T 2r5s_A 168 RRQLY 172 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99885
No 103
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.26 E-value=8.5e-11 Score=134.12 Aligned_cols=151 Identities=14% Similarity=0.087 Sum_probs=130.3
Q ss_pred cccHHHHHHHHHHHH-------HCCCH-------HHHHHHHHHHhc-CCcccchhccCCCCCchhhhHHhHHHHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKL-------QSKEY-------DKAQELLESVLK-DPLIANAQAADGKSSDGHLLQLRFLALKNLATV 94 (1962)
Q Consensus 30 eeeAlalYqkAL~L~-------qqGRf-------eEA~eaY~raLa-~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~l 94 (1962)
+..+..+++.|..+. +.|++ ++|...|+++++ .+| + ...+|.++|.+
T Consensus 47 p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p-------~-----------~~~~~~~~~~~ 108 (308)
T 2ond_A 47 GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-------K-----------NMLLYFAYADY 108 (308)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT-------T-----------CHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc-------c-----------cHHHHHHHHHH
Confidence 556667777776665 35885 999999999998 543 2 13689999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cCCHH
Q 043158 95 FLQQGSSHYESALRCYLQAVEIDTKDSV-VWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIA-IGDEV 172 (1962)
Q Consensus 95 Ll~~g~Gr~eEALe~y~rALaLDP~Dae-aW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~-LGdye 172 (1962)
+... |++++|...|++|++++|.++. +|.++|.++.+.|++++|+..|++|++.+|..+.++...+.+... +|+++
T Consensus 109 ~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 109 EESR--MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp HHHT--TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHH
T ss_pred HHhc--CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHH
Confidence 9999 8999999999999999999997 999999999999999999999999999999999998877666443 79999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHhhh
Q 043158 173 ACLSVAELILRHWPSHSRALHVKNTIEE 200 (1962)
Q Consensus 173 eAL~~~~rALeLdPd~a~Al~lk~~I~~ 200 (1962)
+|..+|+++++++|+++.+|...+.+..
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~~~~~~~ 214 (308)
T 2ond_A 187 VAFKIFELGLKKYGDIPEYVLAYIDYLS 214 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 9999999999999999998877766643
No 104
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.26 E-value=3.7e-11 Score=146.42 Aligned_cols=150 Identities=13% Similarity=0.123 Sum_probs=122.1
Q ss_pred cCChhhhcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcC
Q 043158 20 APTKEAQARPESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQG 99 (1962)
Q Consensus 20 ~~TKEaQa~~eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g 99 (1962)
..+.+.. +..+..+++.|..+.+.|+|++|+..|+++++..+...... + ........+...+|.|+|.++..+
T Consensus 258 ~~~~~~~---~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~-~--~~~~~~~~~~~~~~~nla~~~~~~- 330 (457)
T 1kt0_A 258 EMDTKEK---LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLS-E--KESKASESFLLAAFLNLAMCYLKL- 330 (457)
T ss_dssp GSCHHHH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCC-H--HHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred hcCHHHH---HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCC-h--HHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 3444555 77889999999999999999999999999998532110000 0 000112223568999999999999
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 043158 100 SSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSV 177 (1962)
Q Consensus 100 ~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~ 177 (1962)
|++++|+.+|.+||+++|+++.+|+++|.++..+|++++|+.+|++|++++|++..++.+++.++..+|++.+|...
T Consensus 331 -g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 331 -REYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp -TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988763
No 105
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.25 E-value=8.7e-11 Score=139.03 Aligned_cols=154 Identities=14% Similarity=0.018 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCc-ccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 043158 33 LTQTYHEGLLKLQSKEYDKAQELLESVLKDPL-IANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYL 111 (1962)
Q Consensus 33 AlalYqkAL~L~qqGRfeEA~eaY~raLa~p~-lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~ 111 (1962)
+......|..++..|++++|++.|++++++.. ...... + .. ...+|.|+|.++..+ |++++|+.+|.
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~-~-----~~----~~~~~~nla~~y~~~--g~~~~A~~~~~ 118 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQA-E-----IR----SLVTWGNYAWVYYHM--GRLSDVQIYVD 118 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGC-T-----TT----THHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCcccc-c-----hH----HHHHHHHHHHHHHHc--CChHHHHHHHH
Confidence 33445689999999999999999999987421 000000 0 00 246899999999999 99999999999
Q ss_pred HHHHh--------CCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---cCCHHHHHHHH
Q 043158 112 QAVEI--------DTKDSVVWNQLGTLACSMG--LLSISRWAFEQGLLCSPNNWNCMEKLLEVLIA---IGDEVACLSVA 178 (1962)
Q Consensus 112 rALaL--------DP~DaeaW~nLG~al~~LG--r~eeAr~alErALeLdPd~~~Al~nLg~aL~~---LGdyeeAL~~~ 178 (1962)
+|+++ ++..+.++.++|.++..+| ++++|+.+|++|++++|+++.++.+++.++.. .|++++|+..+
T Consensus 119 ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~ 198 (472)
T 4g1t_A 119 KVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPL 198 (472)
T ss_dssp HHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHH
T ss_pred HHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 99987 4567899999999888765 69999999999999999999999999988654 57889999999
Q ss_pred HHHHHhCCCCHHHHHHHHHh
Q 043158 179 ELILRHWPSHSRALHVKNTI 198 (1962)
Q Consensus 179 ~rALeLdPd~a~Al~lk~~I 198 (1962)
++|++++|+++.++..++..
T Consensus 199 ~~al~l~p~~~~~~~~l~~~ 218 (472)
T 4g1t_A 199 RQAIRLNPDNQYLKVLLALK 218 (472)
T ss_dssp HHHHHHCSSCHHHHHHHHHH
T ss_pred HHHhhcCCcchHHHHHHHHH
Confidence 99999999999888777654
No 106
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.25 E-value=3.1e-11 Score=142.84 Aligned_cols=150 Identities=13% Similarity=0.126 Sum_probs=137.6
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRC 109 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~ 109 (1962)
+..+..++..|..+...|++++|...|+++++..+. ..+|.++|.++... |++++|+..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-------------------~~~~~~l~~~~~~~--~~~~~A~~~ 292 (514)
T 2gw1_A 234 EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-------------------VNSYIYMALIMADR--NDSTEYYNY 292 (514)
T ss_dssp HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-------------------HHHHHHHHHHHHTS--SCCTTGGGH
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-------------------HHHHHHHHHHHHHC--CCHHHHHHH
Confidence 456778888999999999999999999999985431 25788999999999 899999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 043158 110 YLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHS 189 (1962)
Q Consensus 110 y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a 189 (1962)
|.+++.++|.++.+|+.+|.++...|++++|+.+|+++++++|+++.++.++|.++..+|++++|+..++++++.+|+++
T Consensus 293 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 372 (514)
T 2gw1_A 293 FDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAP 372 (514)
T ss_dssp HHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCS
T ss_pred HHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhh
Q 043158 190 RALHVKNTIEE 200 (1962)
Q Consensus 190 ~Al~lk~~I~~ 200 (1962)
.++..++.+..
T Consensus 373 ~~~~~la~~~~ 383 (514)
T 2gw1_A 373 EVPNFFAEILT 383 (514)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888777643
No 107
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.24 E-value=1.3e-10 Score=109.54 Aligned_cols=115 Identities=14% Similarity=0.161 Sum_probs=105.4
Q ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 043158 31 SHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCY 110 (1962)
Q Consensus 31 eeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y 110 (1962)
+.+..++..|..+...|++++|...|+++++..+ . ...++.++|.++... |++++|+..|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-------~-----------~~~~~~~~a~~~~~~--~~~~~A~~~~ 61 (118)
T 1elw_A 2 EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDP-------H-----------NHVLYSNRSAAYAKK--GDYQKAYEDG 61 (118)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------T-----------CHHHHHHHHHHHHHH--TCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-------C-----------cHHHHHHHHHHHHhh--ccHHHHHHHH
Confidence 3567889999999999999999999999997532 1 246899999999999 8999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 043158 111 LQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVL 165 (1962)
Q Consensus 111 ~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL 165 (1962)
.+++.++|+++.+|+++|.++..+|++++|+.+|+++++.+|+++.++..++.+.
T Consensus 62 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 62 CKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999998765
No 108
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.24 E-value=2.5e-11 Score=121.54 Aligned_cols=102 Identities=20% Similarity=0.139 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 043158 35 QTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQAV 114 (1962)
Q Consensus 35 alYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rAL 114 (1962)
.+|..|..+.+.|++++|+..|+++++..| + ...+|.++|.++... |++++|+.+|++|+
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P-------~-----------~~~a~~~lg~~~~~~--g~~~~A~~~~~~al 78 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEP-------E-----------REEAWRSLGLTQAEN--EKDGLAIIALNHAR 78 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHST-------T-----------CHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-------C-----------CHHHHHHHHHHHHHc--CCHHHHHHHHHHHH
Confidence 478999999999999999999999998643 2 247899999999999 99999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHH
Q 043158 115 EIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWN 156 (1962)
Q Consensus 115 aLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~ 156 (1962)
+++|+++.+|+++|.++..+|++++|+.+|+++++++|+++.
T Consensus 79 ~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 79 MLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence 999999999999999999999999999999999999998764
No 109
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.24 E-value=8.4e-11 Score=139.18 Aligned_cols=160 Identities=14% Similarity=0.005 Sum_probs=127.7
Q ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 043158 31 SHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCY 110 (1962)
Q Consensus 31 eeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y 110 (1962)
..+..+.+.|..+...|++++|...|++++++.+... .+... . ...++.++|.++...+.+++++|+++|
T Consensus 92 ~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~-~~~~~----~-----~~~~~~~~g~~~~~~~~~~y~~A~~~~ 161 (472)
T 4g1t_A 92 RSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS-SPYRI----E-----SPELDCEEGWTRLKCGGNQNERAKVCF 161 (472)
T ss_dssp TTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC-CSSCC----C-----CHHHHHHHHHHHHHHCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc-cccch----h-----hHHHHHHHHHHHHHHccccHHHHHHHH
Confidence 3445566677778889999999999999987521000 00000 0 236788999988887556899999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHH---HcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHH
Q 043158 111 LQAVEIDTKDSVVWNQLGTLAC---SMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAI----GDEVACLSVAELILR 183 (1962)
Q Consensus 111 ~rALaLDP~DaeaW~nLG~al~---~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~L----GdyeeAL~~~~rALe 183 (1962)
++|++++|++++++.++|.++. ..|+.++|+..|++|++++|+++.++.++|..+..+ |++++|..++++++.
T Consensus 162 ~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~ 241 (472)
T 4g1t_A 162 EKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALE 241 (472)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999854 567889999999999999999999999999887665 678899999999999
Q ss_pred hCCCCHHHHHHHHHhhh
Q 043158 184 HWPSHSRALHVKNTIEE 200 (1962)
Q Consensus 184 LdPd~a~Al~lk~~I~~ 200 (1962)
++|+++.++..++.+..
T Consensus 242 ~~~~~~~~~~~lg~~~~ 258 (472)
T 4g1t_A 242 KAPGVTDVLRSAAKFYR 258 (472)
T ss_dssp HCSSCHHHHHHHHHHHH
T ss_pred hCccHHHHHHHHHHHHH
Confidence 99999999988877643
No 110
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.24 E-value=8.8e-11 Score=112.80 Aligned_cols=111 Identities=14% Similarity=0.115 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-------HHH
Q 043158 85 FLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNN-------WNC 157 (1962)
Q Consensus 85 ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~-------~~A 157 (1962)
..+|.++|.++... |++++|+.+|.+|+..+|.++.+|+++|.++...|++++|+.+|++++.++|++ +.+
T Consensus 4 ~~~~~~l~~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 4 ALKEKELGNDAYKK--KDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHh--cCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 46789999999999 899999999999999999999999999999999999999999999999999988 999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 043158 158 MEKLLEVLIAIGDEVACLSVAELILRHWPSHSRALHVKNTI 198 (1962)
Q Consensus 158 l~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I 198 (1962)
+.++|.++..+|++++|+.+++++++++| ++..+..+..+
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~ 121 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHH
Confidence 99999999999999999999999999998 46555554443
No 111
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.24 E-value=1.7e-12 Score=159.38 Aligned_cols=130 Identities=14% Similarity=0.153 Sum_probs=112.1
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRC 109 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~ 109 (1962)
++.+..+++.|..+.++|++++|+++|+++++..+ + ...+|.|+|.++..+ |++++|+++
T Consensus 3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p-------~-----------~~~~~~~lg~~~~~~--g~~~~A~~~ 62 (477)
T 1wao_1 3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNP-------S-----------NAIYYGNRSLAYLRT--ECYGYALGD 62 (477)
T ss_dssp HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCT-------T-----------CHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-------c-----------cHHHHHHHHHHHHHh--cCHHHHHHH
Confidence 34555677778888889999999999999998643 1 247899999999999 899999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 043158 110 YLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEV--LIAIGDEVACLSVAE 179 (1962)
Q Consensus 110 y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~a--L~~LGdyeeAL~~~~ 179 (1962)
|++|++++|+++.+|+++|.++..+|++++|+.+|++|++++|+++.++.+++.+ +...|++++|+..++
T Consensus 63 ~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 63 ATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999999999999999999999988 888899999999888
No 112
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.24 E-value=8.3e-12 Score=122.66 Aligned_cols=98 Identities=15% Similarity=0.113 Sum_probs=90.7
Q ss_pred CCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 043158 101 SHYESALRCYLQAVEI---DTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSV 177 (1962)
Q Consensus 101 Gr~eEALe~y~rALaL---DP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~ 177 (1962)
|++++|+.+|++|+++ +|+++.+|+++|.++..+|++++|+.+|+++++++|+++.++.++|.++..+|++++|+..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 7899999999999999 7999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHh
Q 043158 178 AELILRHWPSHSRALHVKNTI 198 (1962)
Q Consensus 178 ~~rALeLdPd~a~Al~lk~~I 198 (1962)
++++++.+|+++........+
T Consensus 84 ~~~al~~~p~~~~~~~~~~ai 104 (117)
T 3k9i_A 84 LLKIIAETSDDETIQSYKQAI 104 (117)
T ss_dssp HHHHHHHHCCCHHHHHTHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHH
Confidence 999999999998776665555
No 113
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.23 E-value=4.6e-11 Score=145.59 Aligned_cols=114 Identities=13% Similarity=0.059 Sum_probs=105.2
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 043158 84 RFLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKD---------------SVVWNQLGTLACSMGLLSISRWAFEQGL 148 (1962)
Q Consensus 84 ~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~D---------------aeaW~nLG~al~~LGr~eeAr~alErAL 148 (1962)
...+|+++|.++... |++++|+.+|.+|++++|.+ +.+|+++|.++..+|++++|+.+|++||
T Consensus 267 ~a~~~~~~G~~~~~~--g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 344 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKG--GKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL 344 (457)
T ss_dssp HHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 467899999999999 99999999999999999999 7999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhh
Q 043158 149 LCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSRALHVKNTIE 199 (1962)
Q Consensus 149 eLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I~ 199 (1962)
+++|+++.+++++|.++..+|++++|+.+|++|++++|++..++..++.+.
T Consensus 345 ~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~ 395 (457)
T 1kt0_A 345 GLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQ 395 (457)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHH
T ss_pred hcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998888877663
No 114
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=1.3e-10 Score=114.99 Aligned_cols=121 Identities=19% Similarity=0.134 Sum_probs=108.9
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRC 109 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~ 109 (1962)
+..+..++..|..+...|++++|+..|+++++..+.. .....+|.++|.++... |++++|+.+
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~~~~~a~~~~~~--~~~~~A~~~ 87 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATP---------------QDQAVLHRNRAACHLKL--EDYDKAETE 87 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCH---------------HHHHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccc---------------hHHHHHHHHHHHHHHHH--ccHHHHHHH
Confidence 5678889999999999999999999999999864310 01247899999999999 899999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 043158 110 YLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIA 167 (1962)
Q Consensus 110 y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~ 167 (1962)
|.+++.++|+++.+|+++|.++..+|++++|+.+|+++++++|++..++..++.+...
T Consensus 88 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 88 ASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999988877543
No 115
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.22 E-value=8.7e-12 Score=141.86 Aligned_cols=105 Identities=14% Similarity=0.096 Sum_probs=83.0
Q ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 043158 31 SHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCY 110 (1962)
Q Consensus 31 eeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y 110 (1962)
..+..++..|..+...|++++|+..|+++++..| + ...+|.|+|.++... |++++|+..|
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-------~-----------~~~~~~~la~~~~~~--~~~~~A~~~~ 61 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-------L-----------VAVYYTNRALCYLKM--QQPEQALADC 61 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-------C-----------CHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------c-----------cHHHHHHHHHHHHHh--cCHHHHHHHH
Confidence 3466778888888888888888888888887532 1 236778888888888 7888888888
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH
Q 043158 111 LQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNW 155 (1962)
Q Consensus 111 ~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~ 155 (1962)
.+|++++|+++.+|+++|.++..+|++++|+..|+++++++|+++
T Consensus 62 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 106 (281)
T 2c2l_A 62 RRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 106 (281)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence 888888888888888888888888888888888888888888664
No 116
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.22 E-value=2.5e-10 Score=108.37 Aligned_cols=117 Identities=23% Similarity=0.333 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 043158 33 LTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQ 112 (1962)
Q Consensus 33 AlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~r 112 (1962)
+..++..|..+...|++++|.+.|+++++..+ + ...++.++|.++... |++++|+..|.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-------~-----------~~~~~~~la~~~~~~--~~~~~A~~~~~~ 68 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-------N-----------NAEAWYNLGNAYYKQ--GDYDEAIEYYQK 68 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------T-----------CHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-------C-----------cHHHHHHHHHHHHHh--CCHHHHHHHHHH
Confidence 67789999999999999999999999997532 1 135788999999999 899999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 043158 113 AVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIG 169 (1962)
Q Consensus 113 ALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LG 169 (1962)
++.++|.++.+|+++|.++...|++++|+.+|++++..+|+++.++.+++.++..+|
T Consensus 69 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 69 ALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999987765
No 117
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.21 E-value=2.3e-10 Score=130.58 Aligned_cols=149 Identities=11% Similarity=0.016 Sum_probs=126.1
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHH-HHHHHHHHHHHcCCCCHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFL-ALKNLATVFLQQGSSHYESALR 108 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~yl-AykNLG~lLl~~g~Gr~eEALe 108 (1962)
+..+..++..|..+.+.|++++|.+.|+++++.+| .. .. +|.++|.++.+. |++++|+.
T Consensus 96 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-------~~-----------~~~~~~~~~~~~~~~--~~~~~A~~ 155 (308)
T 2ond_A 96 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIED-------ID-----------PTLVYIQYMKFARRA--EGIKSGRM 155 (308)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSS-------SC-----------THHHHHHHHHHHHHH--HCHHHHHH
T ss_pred cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccc-------cC-----------ccHHHHHHHHHHHHh--cCHHHHHH
Confidence 56667778888888899999999999999999754 11 12 799999999998 89999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Q 043158 109 CYLQAVEIDTKDSVVWNQLGTLACS-MGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRH--- 184 (1962)
Q Consensus 109 ~y~rALaLDP~DaeaW~nLG~al~~-LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeL--- 184 (1962)
.|.+|++.+|.++.+|...|.+... +|++++|+.+|++|++.+|+++.+|.++|.++..+|++++|...|+++++.
T Consensus 156 ~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l 235 (308)
T 2ond_A 156 IFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCC
Confidence 9999999999999999877776543 799999999999999999999999999999999999999999999999995
Q ss_pred CCC-CHHHHHHHHHh
Q 043158 185 WPS-HSRALHVKNTI 198 (1962)
Q Consensus 185 dPd-~a~Al~lk~~I 198 (1962)
+|+ ....|.....+
T Consensus 236 ~p~~~~~l~~~~~~~ 250 (308)
T 2ond_A 236 PPEKSGEIWARFLAF 250 (308)
T ss_dssp CGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 554 45555444433
No 118
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.20 E-value=1.6e-10 Score=126.01 Aligned_cols=142 Identities=8% Similarity=-0.039 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcC-------------
Q 043158 33 LTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQG------------- 99 (1962)
Q Consensus 33 AlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g------------- 99 (1962)
...++..|..+.+.|++++|++.|+++++..|-... ...+++++|.++...+
T Consensus 41 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~---------------~~~a~~~~g~~~~~~~~~~~~~~~~~~~~ 105 (225)
T 2yhc_A 41 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN---------------IDYVMYMRGLTNMALDDSALQGFFGVDRS 105 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT---------------HHHHHHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc---------------HHHHHHHHHHHHHhhhhhhhhhhhccchh
Confidence 467899999999999999999999999985431100 1246677777766520
Q ss_pred ---CCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCChHHHHHHHHHHHhcCCCCH---H
Q 043158 100 ---SSHYESALRCYLQAVEIDTKDSVVW-----------------NQLGTLACSMGLLSISRWAFEQGLLCSPNNW---N 156 (1962)
Q Consensus 100 ---~Gr~eEALe~y~rALaLDP~DaeaW-----------------~nLG~al~~LGr~eeAr~alErALeLdPd~~---~ 156 (1962)
.|++++|+..|++++..+|+++.++ +.+|.++...|++.+|+..|+++++..|+.+ .
T Consensus 106 ~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 185 (225)
T 2yhc_A 106 DRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRD 185 (225)
T ss_dssp --CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHH
Confidence 1689999999999999999998776 6889999999999999999999999999986 7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 043158 157 CMEKLLEVLIAIGDEVACLSVAELILRHWPSHS 189 (1962)
Q Consensus 157 Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a 189 (1962)
++..+|.++..+|++++|+..++++....|++.
T Consensus 186 a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 186 ALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 899999999999999999999999999998875
No 119
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.20 E-value=1.1e-10 Score=115.20 Aligned_cols=119 Identities=13% Similarity=0.049 Sum_probs=106.4
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRC 109 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~ 109 (1962)
+..+..++..|..+...|++++|+..|++++...+ + ...+|.++|.++... |++++|+.+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-------~-----------~~~~~~~l~~~~~~~--~~~~~A~~~ 65 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-------L-----------VAVYYTNRALCYLKM--QQPEQALAD 65 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------T-----------CHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-------C-----------cHHHHHHHHHHHHHh--cCHHHHHHH
Confidence 56788999999999999999999999999998643 1 246899999999999 999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHc
Q 043158 110 YLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPN-----NWNCMEKLLEVLIAI 168 (1962)
Q Consensus 110 y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd-----~~~Al~nLg~aL~~L 168 (1962)
|.+|+.++|+++.+|+++|.++..+|++++|+.+|+++++++|+ ...+...+..+....
T Consensus 66 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~ 129 (137)
T 3q49_B 66 CRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR 129 (137)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998 677777776665544
No 120
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.20 E-value=3.4e-10 Score=108.06 Aligned_cols=113 Identities=19% Similarity=0.239 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 043158 86 LALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVL 165 (1962)
Q Consensus 86 lAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL 165 (1962)
.+|.++|.++... |++++|+..|.+++..+|+++.+|+.+|.++...|++++|+..|++++..+|+++.++.++|.++
T Consensus 2 ~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 2 EAWYNLGNAYYKQ--GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHH--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHc--CcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHH
Confidence 4688999999999 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhh
Q 043158 166 IAIGDEVACLSVAELILRHWPSHSRALHVKNTIEE 200 (1962)
Q Consensus 166 ~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I~~ 200 (1962)
...|++++|+..++++++..|.++.++..++.+..
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 114 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 114 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 99999999999999999999999988877776643
No 121
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.20 E-value=9.4e-11 Score=126.65 Aligned_cols=144 Identities=19% Similarity=0.170 Sum_probs=124.1
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRC 109 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~ 109 (1962)
+..+..++..|..+...|++++|+..|+++++...-.. .. + . .....++.++|.++... |++++|+.+
T Consensus 40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~-~-----~---~~~~~~~~~l~~~~~~~--g~~~~A~~~ 107 (283)
T 3edt_B 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTL-GK-D-----H---PAVAATLNNLAVLYGKR--GKYKEAEPL 107 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CT-T-----C---HHHHHHHHHHHHHHHTT--TCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHc-CC-c-----c---hHHHHHHHHHHHHHHHh--ccHHHHHHH
Confidence 44567788899999999999999999999997420000 00 0 0 01357899999999999 999999999
Q ss_pred HHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHH
Q 043158 110 YLQAVEI--------DTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLC--------SPNNWNCMEKLLEVLIAIGDEVA 173 (1962)
Q Consensus 110 y~rALaL--------DP~DaeaW~nLG~al~~LGr~eeAr~alErALeL--------dPd~~~Al~nLg~aL~~LGdyee 173 (1962)
|.+|+.+ +|..+.+|+++|.++..+|++++|+.+|++++++ +|....++.++|.++..+|++++
T Consensus 108 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 187 (283)
T 3edt_B 108 CKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQD 187 (283)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHH
Confidence 9999999 6888999999999999999999999999999999 78888999999999999999999
Q ss_pred HHHHHHHHHHhC
Q 043158 174 CLSVAELILRHW 185 (1962)
Q Consensus 174 AL~~~~rALeLd 185 (1962)
|+.++++++++.
T Consensus 188 A~~~~~~~l~~~ 199 (283)
T 3edt_B 188 AETLYKEILTRA 199 (283)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999873
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.19 E-value=1.8e-10 Score=145.08 Aligned_cols=198 Identities=13% Similarity=0.080 Sum_probs=155.7
Q ss_pred HHHHHHHHHHHCCCH-HHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCC----------H
Q 043158 35 QTYHEGLLKLQSKEY-DKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSH----------Y 103 (1962)
Q Consensus 35 alYqkAL~L~qqGRf-eEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr----------~ 103 (1962)
..+...+.+.+.|++ ++|+++|++++...| + +|.+|+++|.++... |+ +
T Consensus 30 ~~~~~~~~~~~~~~~~eeal~~~~~~l~~nP-------~-----------~~taW~~R~~~l~~l--~~~~~~~~~~~~~ 89 (567)
T 1dce_A 30 SATQAVFQKRQAGELDESVLELTSQILGANP-------D-----------FATLWNCRREVLQHL--ETEKSPEESAALV 89 (567)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCT-------T-----------CHHHHHHHHHHHHHH--HTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCc-------h-----------hHHHHHHHHHHHHhc--ccccchhhhhhhH
Confidence 334444445566655 578999999998643 2 478999999999998 66 9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHH
Q 043158 104 ESALRCYLQAVEIDTKDSVVWNQLGTLACSMG--LLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIG-DEVACLSVAEL 180 (1962)
Q Consensus 104 eEALe~y~rALaLDP~DaeaW~nLG~al~~LG--r~eeAr~alErALeLdPd~~~Al~nLg~aL~~LG-dyeeAL~~~~r 180 (1962)
++|+++|.+|+..+|.+..+|++.|.++..+| ++++|+.++++++++||.+..||...+.++..+| .++++++++.+
T Consensus 90 ~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~ 169 (567)
T 1dce_A 90 KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDS 169 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 99999999999999999999999999999999 6799999999999999999999999999999999 99999999999
Q ss_pred HHHhCCCCHHHHHHHHHhhhc-CCCCCCCCCccccCccchhhHHHHhhhHHhhhhhhhhhhhccccccccccC-hhhHHH
Q 043158 181 ILRHWPSHSRALHVKNTIEET-EPVPYAPRGIDKLEPKHVRLKFIDKRKAAAEILDEGVVCKKLNQNIELCLA-ESSWAA 258 (1962)
Q Consensus 181 ALeLdPd~a~Al~lk~~I~~a-dP~~f~P~~~daL~p~~~~L~~i~krk~ed~~~dEAle~Rk~~~al~L~l~-~~SW~~ 258 (1962)
+++.+|.+..||+.++.+... .+.. .... .... ....++++++. ..+++.+.|. +..|..
T Consensus 170 ~I~~~p~n~saW~~r~~ll~~l~~~~--~~~~----~~~~----------~~~~~~eel~~--~~~ai~~~P~~~saW~y 231 (567)
T 1dce_A 170 LITRNFSNYSSWHYRSCLLPQLHPQP--DSGP----QGRL----------PENVLLKELEL--VQNAFFTDPNDQSAWFY 231 (567)
T ss_dssp TTTTTCCCHHHHHHHHHHHHHHSCCC--CSSS----CCSS----------CHHHHHHHHHH--HHHHHHHCSSCSHHHHH
T ss_pred HHHHCCCCccHHHHHHHHHHhhcccc--cccc----cccc----------cHHHHHHHHHH--HHHHHhhCCCCccHHHH
Confidence 999999999999999887442 1111 0000 0000 01134455544 4556777776 899999
Q ss_pred HHHHHHHHhCCC
Q 043158 259 LADTLLDILCPL 270 (1962)
Q Consensus 259 LG~SLL~Ll~~~ 270 (1962)
+|-.+....++.
T Consensus 232 ~~~ll~~~~~~~ 243 (567)
T 1dce_A 232 HRWLLGRAEPHD 243 (567)
T ss_dssp HHHHHSCCCCCS
T ss_pred HHHHHhcCCCcc
Confidence 999887555433
No 123
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.19 E-value=1.3e-10 Score=138.42 Aligned_cols=143 Identities=15% Similarity=0.118 Sum_probs=119.3
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRC 109 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~ 109 (1962)
.+.+..++..|..+.+.|++++|++.|+++++..+...... .. ............+|.|+|.++..+ |++++|+.+
T Consensus 220 ~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~-~~-~~~~~~~~~~~~~~~nla~~~~~~--g~~~~A~~~ 295 (370)
T 1ihg_A 220 LLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAA-ED-ADGAKLQPVALSCVLNIGACKLKM--SDWQGAVDS 295 (370)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHS-CH-HHHGGGHHHHHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCcccc-Ch-HHHHHHHHHHHHHHHHHHHHHHhc--cCHHHHHHH
Confidence 55678899999999999999999999999997311000000 00 000001122568999999999999 899999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 043158 110 YLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLS 176 (1962)
Q Consensus 110 y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~ 176 (1962)
|.+|++++|+++.+|+++|.++..+|++++|+.+|++|++++|+++.++..++.++..++++.++..
T Consensus 296 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 296 CLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999988866
No 124
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.18 E-value=9.7e-10 Score=121.63 Aligned_cols=143 Identities=13% Similarity=0.070 Sum_probs=109.1
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHH----cCCCCHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQ----QGSSHYES 105 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~----~g~Gr~eE 105 (1962)
+.++..++..|..+...|++++|...|+++++.. ...++.++|.++.. . +++++
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~--------------------~~~a~~~lg~~~~~g~~~~--~~~~~ 60 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACDLK--------------------ENSGCFNLGVLYYQGQGVE--KNLKK 60 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHTSSSC--CCHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC--------------------CHHHHHHHHHHHHcCCCcC--CCHHH
Confidence 5677889999999999999999999999998731 12567777877777 6 77888
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHH
Q 043158 106 ALRCYLQAVEIDTKDSVVWNQLGTLACS----MGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIA----IGDEVACLSV 177 (1962)
Q Consensus 106 ALe~y~rALaLDP~DaeaW~nLG~al~~----LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~----LGdyeeAL~~ 177 (1962)
|+.+|++|++++ ++.+++++|.++.. .|++++|+.+|++|++. +++.++.++|.++.. .|++++|+.+
T Consensus 61 A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~ 136 (273)
T 1ouv_A 61 AASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEY 136 (273)
T ss_dssp HHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHH
Confidence 888888887775 77788888888877 78888888888887776 377777888877777 7888888888
Q ss_pred HHHHHHhCCCCHHHHHHHHHhhh
Q 043158 178 AELILRHWPSHSRALHVKNTIEE 200 (1962)
Q Consensus 178 ~~rALeLdPd~a~Al~lk~~I~~ 200 (1962)
++++++.+ ++.++..++.+..
T Consensus 137 ~~~a~~~~--~~~a~~~lg~~~~ 157 (273)
T 1ouv_A 137 FTKACDLN--DGDGCTILGSLYD 157 (273)
T ss_dssp HHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHHHHhcC--cHHHHHHHHHHHH
Confidence 88777765 4566666665543
No 125
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.18 E-value=9.7e-11 Score=138.65 Aligned_cols=111 Identities=8% Similarity=0.021 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHH------HHH
Q 043158 86 LALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWN------CME 159 (1962)
Q Consensus 86 lAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~------Al~ 159 (1962)
.++.++|.++... |++++|+..|.+++..+|+++.+|+++|.++...|++++|+.+|++++.++|+++. ++.
T Consensus 339 ~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 416 (514)
T 2gw1_A 339 FPYIQLACLAYRE--NKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLV 416 (514)
T ss_dssp HHHHHHHHHTTTT--TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHH
T ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHH
Confidence 3455555555555 55666666666666666666666666666666666666666666666665555543 555
Q ss_pred HHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 043158 160 KLLEVLIA---IGDEVACLSVAELILRHWPSHSRALHVKNTI 198 (1962)
Q Consensus 160 nLg~aL~~---LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I 198 (1962)
++|.++.. +|++++|+..++++++++|+++.++..++.+
T Consensus 417 ~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 458 (514)
T 2gw1_A 417 GKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQM 458 (514)
T ss_dssp HHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 66666655 5666666666666666666555555555444
No 126
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.18 E-value=1.4e-10 Score=116.86 Aligned_cols=112 Identities=14% Similarity=0.171 Sum_probs=98.8
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRC 109 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~ 109 (1962)
.+.|.++.+.|..+.++|+|++|++.|+++++..| + ...+|.|+|.++..+ |++++|+++
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p-------~-----------~~~~~~nlg~~~~~~--~~~~~A~~~ 64 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDP-------S-----------NITFYNNKAAVYFEE--KKFAECVQF 64 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------T-----------CHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------C-----------CHHHHHhHHHHHHHh--hhHHHHHHH
Confidence 56788899999999999999999999999998643 2 247899999999999 999999999
Q ss_pred HHHHHHhCCCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q 043158 110 YLQAVEIDTKD-------SVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLL 162 (1962)
Q Consensus 110 y~rALaLDP~D-------aeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg 162 (1962)
|.+|++++|++ +.+|+++|.++..+|++++|+.+|+++|..+|+ ++....|.
T Consensus 65 ~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~ 123 (127)
T 4gcn_A 65 CEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVK 123 (127)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHH
Confidence 99999999987 368999999999999999999999999999986 55554443
No 127
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.17 E-value=1.8e-10 Score=144.96 Aligned_cols=151 Identities=10% Similarity=0.019 Sum_probs=137.6
Q ss_pred cccHHHHHHHHHHHHHCCC----------HHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcC
Q 043158 30 ESHLTQTYHEGLLKLQSKE----------YDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQG 99 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGR----------feEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g 99 (1962)
++...+++.++..+...|+ +++|++.|+++++..| . .|.+|+++|-++...
T Consensus 60 P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-------K-----------~y~aW~hR~w~l~~l- 120 (567)
T 1dce_A 60 PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-------K-----------SYGTWHHRCWLLSRL- 120 (567)
T ss_dssp TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-------T-----------CHHHHHHHHHHHHTC-
T ss_pred chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-------C-----------CHHHHHHHHHHHHHc-
Confidence 6666777778888888888 9999999999998543 2 478999999999998
Q ss_pred CC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--------
Q 043158 100 SS--HYESALRCYLQAVEIDTKDSVVWNQLGTLACSMG-LLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAI-------- 168 (1962)
Q Consensus 100 ~G--r~eEALe~y~rALaLDP~DaeaW~nLG~al~~LG-r~eeAr~alErALeLdPd~~~Al~nLg~aL~~L-------- 168 (1962)
| ++++|++++.+|+++||.+..+|++.|.++..+| .+++|+.+++++|+.+|.+..||.+++.++..+
T Consensus 121 -~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 121 -PEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp -SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred -ccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 7 7799999999999999999999999999999999 999999999999999999999999999999986
Q ss_pred ------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhh
Q 043158 169 ------GDEVACLSVAELILRHWPSHSRALHVKNTIEE 200 (1962)
Q Consensus 169 ------GdyeeAL~~~~rALeLdPd~a~Al~lk~~I~~ 200 (1962)
+++++|++++.+|+.++|++..+|+.++.+..
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~ 237 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLG 237 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHS
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHh
Confidence 66899999999999999999999999988754
No 128
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.16 E-value=1.1e-10 Score=132.65 Aligned_cols=102 Identities=11% Similarity=0.027 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 043158 85 FLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEV 164 (1962)
Q Consensus 85 ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~a 164 (1962)
..+++++|..+... |++++|+.+|.+|++++|+++.+|+++|.++..+|++++|+..|++|++++|+++.++.++|.+
T Consensus 4 a~~~~~~g~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVG--RKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 46789999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCC
Q 043158 165 LIAIGDEVACLSVAELILRHWPSH 188 (1962)
Q Consensus 165 L~~LGdyeeAL~~~~rALeLdPd~ 188 (1962)
+..+|++++|+..|+++++++|++
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHhCccc
Confidence 999999999999999999999976
No 129
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.15 E-value=1.8e-10 Score=137.26 Aligned_cols=113 Identities=12% Similarity=0.087 Sum_probs=107.5
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 043158 84 RFLALKNLATVFLQQGSSHYESALRCYLQAVE----------------IDTKDSVVWNQLGTLACSMGLLSISRWAFEQG 147 (1962)
Q Consensus 84 ~ylAykNLG~lLl~~g~Gr~eEALe~y~rALa----------------LDP~DaeaW~nLG~al~~LGr~eeAr~alErA 147 (1962)
...+|+++|..+... |++++|+.+|++|++ ++|.++.+|+++|.++..+|++++|+.+|++|
T Consensus 222 ~a~~~~~~g~~~~~~--g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 299 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKS--QNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEA 299 (370)
T ss_dssp HHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 357899999999999 899999999999999 89999999999999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 043158 148 LLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSRALHVKNTI 198 (1962)
Q Consensus 148 LeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I 198 (1962)
|+++|+++.+++++|.++..+|++++|+..+++|++++|++..++..++.+
T Consensus 300 l~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~ 350 (370)
T 1ihg_A 300 LEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKV 350 (370)
T ss_dssp HTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999888776665
No 130
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.14 E-value=2.2e-10 Score=126.18 Aligned_cols=157 Identities=17% Similarity=0.088 Sum_probs=131.5
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRC 109 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~ 109 (1962)
+..+..++..|..+...|++++|...|+++++...-. ...+ ......++.++|.++... |++++|+.+
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~--------~~~~~~~~~~la~~~~~~--g~~~~A~~~ 91 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKT--SGHD--------HPDVATMLNILALVYRDQ--NKYKDAANL 91 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--HCSS--------SHHHHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH--cCCC--------CHHHHHHHHHHHHHHHHC--CCHHHHHHH
Confidence 6677889999999999999999999999999741000 0000 011357899999999999 999999999
Q ss_pred HHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHH
Q 043158 110 YLQAVEI--------DTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCS--------PNNWNCMEKLLEVLIAIGDEVA 173 (1962)
Q Consensus 110 y~rALaL--------DP~DaeaW~nLG~al~~LGr~eeAr~alErALeLd--------Pd~~~Al~nLg~aL~~LGdyee 173 (1962)
|.+|+.+ +|..+.+|+++|.++..+|++++|+.+|++++++. |....++.++|.++..+|++++
T Consensus 92 ~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 171 (311)
T 3nf1_A 92 LNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEE 171 (311)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHH
Confidence 9999998 57778999999999999999999999999999984 6667889999999999999999
Q ss_pred HHHHHHHHHHh--------CCCCHHHHHHHHHh
Q 043158 174 CLSVAELILRH--------WPSHSRALHVKNTI 198 (1962)
Q Consensus 174 AL~~~~rALeL--------dPd~a~Al~lk~~I 198 (1962)
|+.++++++++ +|..+.++..++.+
T Consensus 172 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~ 204 (311)
T 3nf1_A 172 VEYYYQRALEIYQTKLGPDDPNVAKTKNNLASC 204 (311)
T ss_dssp HHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99999999998 66656666666554
No 131
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.13 E-value=8.4e-10 Score=107.69 Aligned_cols=116 Identities=16% Similarity=0.060 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 043158 35 QTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQAV 114 (1962)
Q Consensus 35 alYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rAL 114 (1962)
.+|..|..+...|++++|+..|+++++..|... ....++.++|.++... |++++|+..|.+++
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~---------------~~~~~~~~lg~~~~~~--~~~~~A~~~~~~~~ 66 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGV---------------YTPNALYWLGESYYAT--RNFQLAEAQFRDLV 66 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSST---------------THHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCc---------------ccHHHHHHHHHHHHHh--ccHHHHHHHHHHHH
Confidence 478999999999999999999999998533110 0136889999999999 99999999999999
Q ss_pred HhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 043158 115 EIDTKD---SVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIA 167 (1962)
Q Consensus 115 aLDP~D---aeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~ 167 (1962)
..+|++ +.+++++|.++..+|++++|+..|++++...|+++.+...+..+-..
T Consensus 67 ~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l 122 (129)
T 2xev_A 67 SRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI 122 (129)
T ss_dssp HHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred HHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 999999 99999999999999999999999999999999999887666554433
No 132
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.10 E-value=2.6e-10 Score=125.59 Aligned_cols=146 Identities=20% Similarity=0.155 Sum_probs=123.4
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRC 109 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~ 109 (1962)
+..+..++..|..+...|++++|...|+++++...-. ... + . .....++.++|.++... |++++|+.+
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~-~-----~---~~~~~~~~~la~~~~~~--~~~~~A~~~ 175 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV-LGK-D-----H---PDVAKQLNNLALLCQNQ--GKYEEVEYY 175 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH-HCT-T-----C---HHHHHHHHHHHHHHHTT--TCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh-cCC-C-----C---hHHHHHHHHHHHHHHHc--CCHHHHHHH
Confidence 3456677888888999999999999999998742000 000 0 0 01357899999999999 899999999
Q ss_pred HHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-------------------------------
Q 043158 110 YLQAVEI--------DTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLC------------------------------- 150 (1962)
Q Consensus 110 y~rALaL--------DP~DaeaW~nLG~al~~LGr~eeAr~alErALeL------------------------------- 150 (1962)
|.+|+.+ +|..+.+|+++|.++..+|++++|+.+|++++++
T Consensus 176 ~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (311)
T 3nf1_A 176 YQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQK 255 (311)
T ss_dssp HHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchh
Confidence 9999999 8888999999999999999999999999999984
Q ss_pred ------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 043158 151 ------------------SPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPS 187 (1962)
Q Consensus 151 ------------------dPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd 187 (1962)
+|..+.++.++|.++..+|++++|+.++++++++.|+
T Consensus 256 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 256 DGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp --CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 5777888999999999999999999999999999875
No 133
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.10 E-value=4.1e-09 Score=116.60 Aligned_cols=143 Identities=13% Similarity=0.048 Sum_probs=116.2
Q ss_pred cccHHHHHHHHHHHHH----CCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHH----cCCC
Q 043158 30 ESHLTQTYHEGLLKLQ----SKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQ----QGSS 101 (1962)
Q Consensus 30 eeeAlalYqkAL~L~q----qGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~----~g~G 101 (1962)
+..+..++..|..+.. .|++++|...|+++++.. ...++.++|.++.. . +
T Consensus 35 ~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------------------~~~a~~~lg~~~~~g~~~~--~ 92 (273)
T 1ouv_A 35 LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------------------YSNGCHLLGNLYYSGQGVS--Q 92 (273)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHTSSSC--C
T ss_pred CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--------------------CHHHHHHHHHHHhCCCCcc--c
Confidence 4456778888999999 999999999999998752 13578888888888 7 7
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHH
Q 043158 102 HYESALRCYLQAVEIDTKDSVVWNQLGTLACS----MGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIA----IGDEVA 173 (1962)
Q Consensus 102 r~eEALe~y~rALaLDP~DaeaW~nLG~al~~----LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~----LGdyee 173 (1962)
++++|+.+|++|++.+ ++.+++++|.++.. .|++++|+.+|++|++.+ ++.++.++|.++.. .+++++
T Consensus 93 ~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~ 168 (273)
T 1ouv_A 93 NTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKK 168 (273)
T ss_dssp CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred CHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHH
Confidence 8888888888888874 78888888888888 888888888888888875 67888888888887 888888
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHhhh
Q 043158 174 CLSVAELILRHWPSHSRALHVKNTIEE 200 (1962)
Q Consensus 174 AL~~~~rALeLdPd~a~Al~lk~~I~~ 200 (1962)
|+.+++++++.+ ++.++..++.+..
T Consensus 169 A~~~~~~a~~~~--~~~a~~~lg~~~~ 193 (273)
T 1ouv_A 169 ALASYDKACDLK--DSPGCFNAGNMYH 193 (273)
T ss_dssp HHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC--CHHHHHHHHHHHH
Confidence 888888888774 5667777766644
No 134
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.10 E-value=3.2e-10 Score=122.50 Aligned_cols=144 Identities=18% Similarity=0.102 Sum_probs=121.6
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRC 109 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~ 109 (1962)
+..+..++..|..+...|++++|++.|+++++... .....+ . .....++.++|.++... |++++|+.+
T Consensus 82 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~-----~---~~~~~~~~~la~~~~~~--g~~~~A~~~ 149 (283)
T 3edt_B 82 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE--KVLGKF-----H---PDVAKQLNNLALLCQNQ--GKAEEVEYY 149 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH--HHHCTT-----C---HHHHHHHHHHHHHHHTT--TCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH--HHcCCC-----C---hHHHHHHHHHHHHHHHc--CCHHHHHHH
Confidence 44567788889999999999999999999997410 000000 0 01357899999999999 999999999
Q ss_pred HHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-------------------------------
Q 043158 110 YLQAVEI--------DTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLC------------------------------- 150 (1962)
Q Consensus 110 y~rALaL--------DP~DaeaW~nLG~al~~LGr~eeAr~alErALeL------------------------------- 150 (1962)
|.+|+++ +|..+.++.++|.++..+|++++|+.+|++++++
T Consensus 150 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (283)
T 3edt_B 150 YRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRR 229 (283)
T ss_dssp HHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchh
Confidence 9999999 8888999999999999999999999999999986
Q ss_pred ------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 043158 151 ------------------SPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHW 185 (1962)
Q Consensus 151 ------------------dPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLd 185 (1962)
.|..+.++.++|.++..+|++++|+.++++++++.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 230 DSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp C------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 25557789999999999999999999999999764
No 135
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.10 E-value=1.2e-09 Score=128.02 Aligned_cols=117 Identities=10% Similarity=0.020 Sum_probs=108.2
Q ss_pred hHHHHHHHHHHH----HHcCC-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH--HHHHHHHHHHhcCCCCHH
Q 043158 84 RFLALKNLATVF----LQQGS-SHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLS--ISRWAFEQGLLCSPNNWN 156 (1962)
Q Consensus 84 ~ylAykNLG~lL----l~~g~-Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~e--eAr~alErALeLdPd~~~ 156 (1962)
.|.+|+++|.++ ...+. ++++++++++.++++++|.+..+|++.|.++..+|+++ +++.+++++|+.||.+..
T Consensus 102 ~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~s 181 (306)
T 3dra_A 102 NYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNS 181 (306)
T ss_dssp CCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHH
T ss_pred cHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHH
Confidence 468999999999 54421 57999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHHcCC------HHHHHHHHHHHHHhCCCCHHHHHHHHHhhh
Q 043158 157 CMEKLLEVLIAIGD------EVACLSVAELILRHWPSHSRALHVKNTIEE 200 (1962)
Q Consensus 157 Al~nLg~aL~~LGd------yeeAL~~~~rALeLdPd~a~Al~lk~~I~~ 200 (1962)
||.+.+.++..+|+ +++++.++.+++..+|++..||+.++.+..
T Consensus 182 AW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~ 231 (306)
T 3dra_A 182 AWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHE 231 (306)
T ss_dssp HHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Confidence 99999999999998 999999999999999999999988877654
No 136
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.10 E-value=9e-11 Score=137.46 Aligned_cols=113 Identities=9% Similarity=-0.045 Sum_probs=94.8
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCChHHHHHHHHH
Q 043158 84 RFLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDS-----------------VVWNQLGTLACSMGLLSISRWAFEQ 146 (1962)
Q Consensus 84 ~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~Da-----------------eaW~nLG~al~~LGr~eeAr~alEr 146 (1962)
....|+++|..+... |++++|+.+|.+|+.++|++. .+|+++|.++..+|++++|+.+|++
T Consensus 178 ~a~~~~~~g~~~~~~--g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~ 255 (338)
T 2if4_A 178 AADRRKMDGNSLFKE--EKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHHTCSS--SCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 457899999999999 899999999999999999988 4999999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 043158 147 GLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSRALHVKNTI 198 (1962)
Q Consensus 147 ALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I 198 (1962)
||+++|+++.+++++|.++..+|++++|+.+|+++++++|+++.++..+..+
T Consensus 256 al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l 307 (338)
T 2if4_A 256 VLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRAL 307 (338)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999888776665
No 137
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.09 E-value=9.4e-10 Score=119.76 Aligned_cols=146 Identities=13% Similarity=-0.022 Sum_probs=129.6
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCC---CHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSS---HYESA 106 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~G---r~eEA 106 (1962)
..++.+++..|..+...+++++|...|+++++.. ...+++++|.++... | ++++|
T Consensus 15 ~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g--------------------~~~a~~~lg~~y~~~--g~~~~~~~A 72 (212)
T 3rjv_A 15 AGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG--------------------DGDALALLAQLKIRN--PQQADYPQA 72 (212)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--------------------CHHHHHHHHHHTTSS--TTSCCHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--------------------CHHHHHHHHHHHHcC--CCCCCHHHH
Confidence 4577889999999999999999999999998642 236899999998862 3 89999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHH----cCCHHHHHH
Q 043158 107 LRCYLQAVEIDTKDSVVWNQLGTLACS----MGLLSISRWAFEQGLLCSP--NNWNCMEKLLEVLIA----IGDEVACLS 176 (1962)
Q Consensus 107 Le~y~rALaLDP~DaeaW~nLG~al~~----LGr~eeAr~alErALeLdP--d~~~Al~nLg~aL~~----LGdyeeAL~ 176 (1962)
+.+|++|+ +++++.++++||.++.. .+++++|+..|++|++..| +++.++.+||.++.. .+++++|+.
T Consensus 73 ~~~~~~A~--~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 150 (212)
T 3rjv_A 73 RQLAEKAV--EAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASE 150 (212)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHH
T ss_pred HHHHHHHH--HCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 99999995 46899999999999998 8999999999999999998 569999999999999 889999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHhhh
Q 043158 177 VAELILRHWPSHSRALHVKNTIEE 200 (1962)
Q Consensus 177 ~~~rALeLdPd~a~Al~lk~~I~~ 200 (1962)
+|++|+++ |+++.+++.++.+..
T Consensus 151 ~~~~A~~~-~~~~~a~~~Lg~~y~ 173 (212)
T 3rjv_A 151 YFKGSSSL-SRTGYAEYWAGMMFQ 173 (212)
T ss_dssp HHHHHHHT-SCTTHHHHHHHHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHHHHHH
Confidence 99999999 778889988888754
No 138
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.09 E-value=5.7e-10 Score=130.02 Aligned_cols=149 Identities=10% Similarity=0.067 Sum_probs=85.7
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 043158 36 TYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQAVE 115 (1962)
Q Consensus 36 lYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rALa 115 (1962)
+|.+|..+...|++++|+..|+++++........+ ....+|.++|.++... |++++|+.+|.+|++
T Consensus 106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------------~~a~~~~~lg~~~~~~--~~~~~A~~~~~~al~ 171 (383)
T 3ulq_A 106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRI------------EKAEFFFKMSESYYYM--KQTYFSMDYARQAYE 171 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHH------------HHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHH------------HHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH
Confidence 34489999999999999999999998521000000 0234555556655555 556666666666655
Q ss_pred hCCC-------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043158 116 IDTK-------DSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNW------NCMEKLLEVLIAIGDEVACLSVAELIL 182 (1962)
Q Consensus 116 LDP~-------DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~------~Al~nLg~aL~~LGdyeeAL~~~~rAL 182 (1962)
+.+. .+.+++++|.++..+|++++|+.+|++|+++.|... .++.++|.++..+|++++|+.++++|+
T Consensus 172 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al 251 (383)
T 3ulq_A 172 IYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAI 251 (383)
T ss_dssp HHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5222 234555566666666666666666666555543221 345555666666666666666665555
Q ss_pred H-----hC-CCCHHHHHHHHHh
Q 043158 183 R-----HW-PSHSRALHVKNTI 198 (1962)
Q Consensus 183 e-----Ld-Pd~a~Al~lk~~I 198 (1962)
+ .+ |..+.++..++.+
T Consensus 252 ~~~~~~~~~~~~~~~~~~l~~~ 273 (383)
T 3ulq_A 252 AVFEESNILPSLPQAYFLITQI 273 (383)
T ss_dssp HHHHHTTCGGGHHHHHHHHHHH
T ss_pred HHHHhhccchhHHHHHHHHHHH
Confidence 5 33 4444444444443
No 139
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.08 E-value=2.3e-09 Score=125.72 Aligned_cols=189 Identities=13% Similarity=0.058 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHCCCH-HHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCC--CHHHHHHHHH
Q 043158 35 QTYHEGLLKLQSKEY-DKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSS--HYESALRCYL 111 (1962)
Q Consensus 35 alYqkAL~L~qqGRf-eEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~G--r~eEALe~y~ 111 (1962)
.++.....+.+.|.+ ++|++++.++|...| + +|.+|+.+|.++... | ++++|++++.
T Consensus 34 ~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP-------~-----------~~taWn~R~~~L~~l--~~~~~~eeL~~~~ 93 (306)
T 3dra_A 34 QIMGLLLALMKAEEYSERALHITELGINELA-------S-----------HYTIWIYRFNILKNL--PNRNLYDELDWCE 93 (306)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCT-------T-----------CHHHHHHHHHHHHTC--TTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCc-------H-----------HHHHHHHHHHHHHHc--ccccHHHHHHHHH
Confidence 344444445556655 689999999998643 2 478999999999998 7 9999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHH----HHc---CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHH
Q 043158 112 QAVEIDTKDSVVWNQLGTLA----CSM---GLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEV--ACLSVAELIL 182 (1962)
Q Consensus 112 rALaLDP~DaeaW~nLG~al----~~L---Gr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdye--eAL~~~~rAL 182 (1962)
++|.++|.+..+|+..+.++ ..+ +++++++.+++++|+.+|.+..+|...+-++..+|+++ +++.++.+++
T Consensus 94 ~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i 173 (306)
T 3dra_A 94 EIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVI 173 (306)
T ss_dssp HHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHH
Confidence 99999999999999999999 778 89999999999999999999999999999999999999 9999999999
Q ss_pred HhCCCCHHHHHHHHHhhhcCCCCCCCCCccccCccchhhHHHHhhhHHhhhhhhhhhhhccccccccccC-hhhHHHHHH
Q 043158 183 RHWPSHSRALHVKNTIEETEPVPYAPRGIDKLEPKHVRLKFIDKRKAAAEILDEGVVCKKLNQNIELCLA-ESSWAALAD 261 (1962)
Q Consensus 183 eLdPd~a~Al~lk~~I~~adP~~f~P~~~daL~p~~~~L~~i~krk~ed~~~dEAle~Rk~~~al~L~l~-~~SW~~LG~ 261 (1962)
+.+|.+..||+.+..+.... +.. ... ..++++++. ..+++.+.|. ...|..+|.
T Consensus 174 ~~d~~N~sAW~~R~~ll~~l------~~~-------~~~----------~~~~eEl~~--~~~aI~~~p~n~SaW~y~~~ 228 (306)
T 3dra_A 174 DTDLKNNSAWSHRFFLLFSK------KHL-------ATD----------NTIDEELNY--VKDKIVKCPQNPSTWNYLLG 228 (306)
T ss_dssp HHCTTCHHHHHHHHHHHHSS------GGG-------CCH----------HHHHHHHHH--HHHHHHHCSSCHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHhc------ccc-------chh----------hhHHHHHHH--HHHHHHhCCCCccHHHHHHH
Confidence 99999999999998874421 100 000 022333433 3445667776 889999999
Q ss_pred HHHHHhC
Q 043158 262 TLLDILC 268 (1962)
Q Consensus 262 SLL~Ll~ 268 (1962)
.|-.+..
T Consensus 229 ll~~~~~ 235 (306)
T 3dra_A 229 IHERFDR 235 (306)
T ss_dssp HHHHTTC
T ss_pred HHHhcCC
Confidence 8876654
No 140
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.07 E-value=1e-09 Score=108.16 Aligned_cols=143 Identities=14% Similarity=0.033 Sum_probs=120.1
Q ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 043158 31 SHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCY 110 (1962)
Q Consensus 31 eeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y 110 (1962)
..+..++..|..+...|++++|+..|+++++..+-. . + ......++.++|.++... |++++|+.+|
T Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---~-~--------~~~~~~~~~~l~~~~~~~--g~~~~A~~~~ 72 (164)
T 3ro3_A 7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF---G-D--------KAAERIAYSNLGNAYIFL--GEFETASEYY 72 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---T-C--------HHHHHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh---C-C--------chHHHHHHHHHHHHHHHc--CCHHHHHHHH
Confidence 346778899999999999999999999999752100 0 0 011346899999999999 9999999999
Q ss_pred HHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHH
Q 043158 111 LQAVEIDTKD------SVVWNQLGTLACSMGLLSISRWAFEQGLLCSPN------NWNCMEKLLEVLIAIGDEVACLSVA 178 (1962)
Q Consensus 111 ~rALaLDP~D------aeaW~nLG~al~~LGr~eeAr~alErALeLdPd------~~~Al~nLg~aL~~LGdyeeAL~~~ 178 (1962)
.+|+++.+.. +.+++++|.++..+|++++|+.+|++++++.+. .+.++.++|.++..+|++++|+.++
T Consensus 73 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 152 (164)
T 3ro3_A 73 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA 152 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 9999987664 779999999999999999999999999987532 2567899999999999999999999
Q ss_pred HHHHHhCCC
Q 043158 179 ELILRHWPS 187 (1962)
Q Consensus 179 ~rALeLdPd 187 (1962)
++++++...
T Consensus 153 ~~a~~~~~~ 161 (164)
T 3ro3_A 153 EKHLEISRE 161 (164)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHH
Confidence 999987543
No 141
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.07 E-value=1.4e-10 Score=142.54 Aligned_cols=111 Identities=15% Similarity=0.158 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 043158 86 LALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVL 165 (1962)
Q Consensus 86 lAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL 165 (1962)
.+|+++|..+... |++++|+++|++|++++|+++.+|+++|.++..+|++++|+.+|++|++++|+++.++.++|.++
T Consensus 7 ~~~~~lg~~~~~~--g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 84 (477)
T 1wao_1 7 EELKTQANDYFKA--KDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 84 (477)
T ss_dssp TTSSSSSSSTTTT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4567788888888 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 043158 166 IAIGDEVACLSVAELILRHWPSHSRALHVKNTI 198 (1962)
Q Consensus 166 ~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I 198 (1962)
..+|++++|+.++++|++++|+++.++..++.+
T Consensus 85 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~ 117 (477)
T 1wao_1 85 MALGKFRAALRDYETVVKVKPHDKDAKMKYQEC 117 (477)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999999999999998877766554
No 142
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.07 E-value=1.1e-09 Score=116.00 Aligned_cols=100 Identities=10% Similarity=0.044 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 043158 85 FLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEV 164 (1962)
Q Consensus 85 ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~a 164 (1962)
...++++|..+... |++++|+.+|.+|+ +| ++.+|+++|.++..+|++++|+.+|+++++++|+++.++.++|.+
T Consensus 6 ~~~~~~~g~~~~~~--~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 6 AISLWNEGVLAADK--KDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 45688999999999 99999999999995 44 899999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCH
Q 043158 165 LIAIGDEVACLSVAELILRHWPSHS 189 (1962)
Q Consensus 165 L~~LGdyeeAL~~~~rALeLdPd~a 189 (1962)
+..+|++++|+..+++++++.|++.
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~ 105 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQ 105 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCS
T ss_pred HHHcccHHHHHHHHHHHHHhCCCcc
Confidence 9999999999999999999998876
No 143
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.07 E-value=8.7e-10 Score=105.82 Aligned_cols=118 Identities=11% Similarity=0.146 Sum_probs=105.1
Q ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 043158 31 SHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCY 110 (1962)
Q Consensus 31 eeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y 110 (1962)
+.+..++..|..+...|++++|+..|+++++..+ . ...++.++|.++... |++++|+.+|
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-------~-----------~~~~~~~la~~~~~~--~~~~~A~~~~ 61 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDP-------T-----------NMTYITNQAAVYFEK--GDYNKCRELC 61 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------T-----------CHHHHHHHHHHHHHH--TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-------c-----------cHHHHHHHHHHHHHh--ccHHHHHHHH
Confidence 3567789999999999999999999999997532 1 246789999999999 8999999999
Q ss_pred HHHHHhCCCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 043158 111 LQAVEIDTKD-------SVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIG 169 (1962)
Q Consensus 111 ~rALaLDP~D-------aeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LG 169 (1962)
.+++.++|.+ +.+|+++|.++..+|++++|+.+|++++.++| ++..+..++.+...++
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 62 EKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred HHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 9999999988 99999999999999999999999999999999 5888888887776543
No 144
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.06 E-value=2.7e-10 Score=111.85 Aligned_cols=99 Identities=10% Similarity=-0.002 Sum_probs=83.8
Q ss_pred HCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 043158 45 QSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVW 124 (1962)
Q Consensus 45 qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW 124 (1962)
..|++++|+..|+++++..+. .+ + ...+|.++|.++... |++++|+.+|++|++++|+++.+|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~---~p-~-----------~~~~~~~lg~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~ 64 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQ---GK-D-----------LAECYLGLGSTFRTL--GEYRKAEAVLANGVKQFPNHQALR 64 (117)
T ss_dssp -----CCCHHHHHHHHSSCCC---HH-H-----------HHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCC---Cc-c-----------HHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCchHHH
Confidence 368999999999999986210 01 1 347899999999999 999999999999999999999999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHH
Q 043158 125 NQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEK 160 (1962)
Q Consensus 125 ~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~n 160 (1962)
+++|.++..+|++++|+.+|+++++.+|+++....-
T Consensus 65 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 100 (117)
T 3k9i_A 65 VFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSY 100 (117)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 999999999999999999999999999999887543
No 145
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.06 E-value=3e-10 Score=107.77 Aligned_cols=92 Identities=17% Similarity=0.204 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------HHHH
Q 043158 85 FLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNN------WNCM 158 (1962)
Q Consensus 85 ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~------~~Al 158 (1962)
..+|.++|.++... |++++|+.+|.+|++++|+++.+|+++|.++..+|++++|+.+|+++++++|++ +.++
T Consensus 4 ~~~~~~~g~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQ--GLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 46899999999999 899999999999999999999999999999999999999999999999999999 8999
Q ss_pred HHHHHHHHHcCCHHHHHHHH
Q 043158 159 EKLLEVLIAIGDEVACLSVA 178 (1962)
Q Consensus 159 ~nLg~aL~~LGdyeeAL~~~ 178 (1962)
.++|.++..+|++++|+..+
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHH
Confidence 99999999999877776543
No 146
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.05 E-value=8e-10 Score=128.76 Aligned_cols=142 Identities=10% Similarity=0.005 Sum_probs=122.6
Q ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 043158 31 SHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCY 110 (1962)
Q Consensus 31 eeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y 110 (1962)
..+..++..|..+...|++++|...|+++++... .... .. .....++.++|.++... |++++|+++|
T Consensus 141 ~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~-------~~~~-~~---~~~~~~~~~lg~~~~~~--g~~~~A~~~~ 207 (383)
T 3ulq_A 141 EKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYK-------EHEA-YN---IRLLQCHSLFATNFLDL--KQYEDAISHF 207 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------TCST-TH---HHHHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-------hCcc-ch---HHHHHHHHHHHHHHHHh--cCHHHHHHHH
Confidence 3677889999999999999999999999997521 0000 00 11357899999999999 9999999999
Q ss_pred HHHHHhCCCCH------HHHHHHHHHHHHcCChHHHHHHHHHHHh-----cC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 043158 111 LQAVEIDTKDS------VVWNQLGTLACSMGLLSISRWAFEQGLL-----CS-PNNWNCMEKLLEVLIAIGDEVACLSVA 178 (1962)
Q Consensus 111 ~rALaLDP~Da------eaW~nLG~al~~LGr~eeAr~alErALe-----Ld-Pd~~~Al~nLg~aL~~LGdyeeAL~~~ 178 (1962)
.+|+++.|... .+++++|.++..+|++++|+.+|++|++ .+ |..+.++.++|.++..+|++++|+.++
T Consensus 208 ~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 287 (383)
T 3ulq_A 208 QKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYH 287 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999966543 5999999999999999999999999999 57 889999999999999999999999999
Q ss_pred HHHHHhC
Q 043158 179 ELILRHW 185 (1962)
Q Consensus 179 ~rALeLd 185 (1962)
++++++.
T Consensus 288 ~~al~~~ 294 (383)
T 3ulq_A 288 SKGMAYS 294 (383)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999984
No 147
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.04 E-value=2.6e-10 Score=122.44 Aligned_cols=92 Identities=18% Similarity=0.202 Sum_probs=82.0
Q ss_pred HCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCH----------HHHHHHHHHHH
Q 043158 45 QSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHY----------ESALRCYLQAV 114 (1962)
Q Consensus 45 qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~----------eEALe~y~rAL 114 (1962)
+.++|++|++.|+++++..| + +..+|.|+|.++... +++ ++|+.+|++||
T Consensus 14 r~~~feeA~~~~~~Ai~l~P-------~-----------~aea~~n~G~~l~~l--~~~~~g~~al~~~~eAi~~le~AL 73 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNP-------L-----------DADNLTRWGGVLLEL--SQFHSISDAKQMIQEAITKFEEAL 73 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCT-------T-----------CHHHHHHHHHHHHHH--HHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCC-------C-----------CHHHHHHHHHHHHHh--cccchhhhhHhHHHHHHHHHHHHH
Confidence 45789999999999998643 2 257899999999998 664 69999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcC-----------ChHHHHHHHHHHHhcCCCCHH
Q 043158 115 EIDTKDSVVWNQLGTLACSMG-----------LLSISRWAFEQGLLCSPNNWN 156 (1962)
Q Consensus 115 aLDP~DaeaW~nLG~al~~LG-----------r~eeAr~alErALeLdPd~~~ 156 (1962)
+++|+++++|+++|.++..+| ++++|+.+|++||+++|++..
T Consensus 74 ~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 74 LIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence 999999999999999999985 899999999999999999853
No 148
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.02 E-value=3.9e-09 Score=119.42 Aligned_cols=155 Identities=13% Similarity=0.004 Sum_probs=124.2
Q ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 043158 31 SHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCY 110 (1962)
Q Consensus 31 eeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y 110 (1962)
+....+..++..+...|++++|.+.|+++++..+... ........++++|.++... |++++|+.+|
T Consensus 73 ~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~------------~~~~~~~~~~~~~~~~~~~--~~~~~A~~~~ 138 (293)
T 2qfc_A 73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHP------------EFQQFLQWQYYVAAYVLKK--VDYEYCILEL 138 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCH------------HHHHHHHHHHHHHHHHHTS--SCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCCh------------hHHHHHHHHHHHHHHHhcC--CCHHHHHHHH
Confidence 4455677888899999999999999999998542110 0111234567899999888 8999999999
Q ss_pred HHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHH---hcCCCCH----HHHHHHHHHHHHcCCHHHHHHH
Q 043158 111 LQAVEIDTKD------SVVWNQLGTLACSMGLLSISRWAFEQGL---LCSPNNW----NCMEKLLEVLIAIGDEVACLSV 177 (1962)
Q Consensus 111 ~rALaLDP~D------aeaW~nLG~al~~LGr~eeAr~alErAL---eLdPd~~----~Al~nLg~aL~~LGdyeeAL~~ 177 (1962)
.+|+.+.+.. +.+|+++|.++..+|++++|+.+|++|+ ...|+.. .++.++|.++..+|+|++|+.+
T Consensus 139 ~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~ 218 (293)
T 2qfc_A 139 KKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQ 218 (293)
T ss_dssp HHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHH
Confidence 9999886655 7799999999999999999999999999 5566643 6899999999999999999999
Q ss_pred HHHHHHhCCCC------HHHHHHHHHhh
Q 043158 178 AELILRHWPSH------SRALHVKNTIE 199 (1962)
Q Consensus 178 ~~rALeLdPd~------a~Al~lk~~I~ 199 (1962)
+++++++.++. +.++..++.+.
T Consensus 219 ~~kal~~~~~~~~~~~~~~~~~~lg~~y 246 (293)
T 2qfc_A 219 VNKAIEISCRINSMALIGQLYYQRGECL 246 (293)
T ss_dssp HHHHHHHHHHTTBCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 99999885431 44555555543
No 149
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.02 E-value=8.4e-10 Score=126.32 Aligned_cols=144 Identities=10% Similarity=0.028 Sum_probs=115.6
Q ss_pred cccHHHHHHHHHH-HHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHH
Q 043158 30 ESHLTQTYHEGLL-KLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALR 108 (1962)
Q Consensus 30 eeeAlalYqkAL~-L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe 108 (1962)
.++|...|.++.. +...|++++|.++|++++.... ..++ . .-...+|.++|.++... |++++|+.
T Consensus 32 ~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~----~~~~-----~---~~~a~~~~~lg~~~~~~--g~~~~A~~ 97 (307)
T 2ifu_A 32 YDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHA----NNRS-----L---FHAAKAFEQAGMMLKDL--QRMPEAVQ 97 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----HTTC-----H---HHHHHHHHHHHHHHHHT--TCGGGGHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH----HcCC-----H---HHHHHHHHHHHHHHHhC--CCHHHHHH
Confidence 5677788887644 6677999999999999987521 0000 0 00246788999999998 89999999
Q ss_pred HHHHHHHhCCC--C----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHH
Q 043158 109 CYLQAVEIDTK--D----SVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNN------WNCMEKLLEVLIAIGDEVACLS 176 (1962)
Q Consensus 109 ~y~rALaLDP~--D----aeaW~nLG~al~~LGr~eeAr~alErALeLdPd~------~~Al~nLg~aL~~LGdyeeAL~ 176 (1962)
+|++|+++.+. + +.++.++|.++.. |++++|+.+|++|+++.|.. ..++.++|.++..+|+|++|+.
T Consensus 98 ~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 176 (307)
T 2ifu_A 98 YIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAA 176 (307)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999998542 2 5789999999998 99999999999999988754 6788999999999999999999
Q ss_pred HHHHHHHhCCCC
Q 043158 177 VAELILRHWPSH 188 (1962)
Q Consensus 177 ~~~rALeLdPd~ 188 (1962)
+|++++++.|+.
T Consensus 177 ~~~~al~~~~~~ 188 (307)
T 2ifu_A 177 SLQKEKSMYKEM 188 (307)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc
Confidence 999999986654
No 150
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.02 E-value=7.6e-10 Score=107.66 Aligned_cols=85 Identities=14% Similarity=0.023 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043158 104 ESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILR 183 (1962)
Q Consensus 104 eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALe 183 (1962)
++|++.|.+|++.+|+++.+|+++|.++...|++++|+.+|+++++++|+++.++.++|.++..+|++++|+.+|+++++
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCC
Q 043158 184 HWPSH 188 (1962)
Q Consensus 184 LdPd~ 188 (1962)
++|++
T Consensus 82 ~~~~~ 86 (115)
T 2kat_A 82 AAQSR 86 (115)
T ss_dssp HHHHH
T ss_pred hcccc
Confidence 98854
No 151
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.01 E-value=4.1e-09 Score=125.06 Aligned_cols=164 Identities=10% Similarity=0.028 Sum_probs=139.9
Q ss_pred CcCChhhhcCCcccHHHHHHHHHHHHHCCC----------HHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHH
Q 043158 19 LAPTKEAQARPESHLTQTYHEGLLKLQSKE----------YDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLAL 88 (1962)
Q Consensus 19 ~~~TKEaQa~~eeeAlalYqkAL~L~qqGR----------feEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAy 88 (1962)
.+-|.++-.-+++...+++.++..+...|+ +++++..++.+|...| . .|.+|
T Consensus 50 L~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P-------K-----------ny~aW 111 (331)
T 3dss_A 50 LELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-------K-----------SYGTW 111 (331)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-------T-----------CHHHH
T ss_pred HHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC-------C-----------CHHHH
Confidence 444444444458888899999888877765 7888999999887532 1 47899
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 043158 89 KNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGL-LSISRWAFEQGLLCSPNNWNCMEKLLEVLIA 167 (1962)
Q Consensus 89 kNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr-~eeAr~alErALeLdPd~~~Al~nLg~aL~~ 167 (1962)
+++|.++...+..+++++++++.+++++||.+..+|++.|.++..+|+ +++++.+++++|+.+|.+..||.+++.++..
T Consensus 112 ~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~ 191 (331)
T 3dss_A 112 HHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ 191 (331)
T ss_dssp HHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 999999999831159999999999999999999999999999999999 5999999999999999999999999999998
Q ss_pred c--------------CCHHHHHHHHHHHHHhCCCCHHHHHHH-HHhhh
Q 043158 168 I--------------GDEVACLSVAELILRHWPSHSRALHVK-NTIEE 200 (1962)
Q Consensus 168 L--------------GdyeeAL~~~~rALeLdPd~a~Al~lk-~~I~~ 200 (1962)
+ +.+++++.++.+|+..+|++..||+.+ ..+..
T Consensus 192 l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~ 239 (331)
T 3dss_A 192 LHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGA 239 (331)
T ss_dssp HSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHS
T ss_pred hhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 8 568999999999999999999999754 45443
No 152
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.01 E-value=7.5e-10 Score=126.70 Aligned_cols=142 Identities=11% Similarity=0.062 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 043158 33 LTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQ 112 (1962)
Q Consensus 33 AlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~r 112 (1962)
+..+.+.|..+...|++++|+.+|+++++... .. . +. .....++.|+|.++.. |++++|+.+|++
T Consensus 76 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~----~~-g-----~~--~~~a~~~~~lg~~~~~---g~~~~A~~~~~~ 140 (307)
T 2ifu_A 76 AKAFEQAGMMLKDLQRMPEAVQYIEKASVMYV----EN-G-----TP--DTAAMALDRAGKLMEP---LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHH----TT-T-----CH--HHHHHHHHHHHHHHTT---TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH----Hc-C-----CH--HHHHHHHHHHHHHHHc---CCHHHHHHHHHH
Confidence 34455566667778999999999999887421 00 0 00 0124688999999965 689999999999
Q ss_pred HHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043158 113 AVEIDTKD------SVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNN------WNCMEKLLEVLIAIGDEVACLSVAEL 180 (1962)
Q Consensus 113 ALaLDP~D------aeaW~nLG~al~~LGr~eeAr~alErALeLdPd~------~~Al~nLg~aL~~LGdyeeAL~~~~r 180 (1962)
|+++.|.. +.++.++|.++..+|++++|+.+|++++.+.|+. ..++.++|.++..+|++++|+.+|++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99998865 7899999999999999999999999999997754 34788999999999999999999999
Q ss_pred HHHhCCCCHH
Q 043158 181 ILRHWPSHSR 190 (1962)
Q Consensus 181 ALeLdPd~a~ 190 (1962)
++ ++|++..
T Consensus 221 al-~~p~~~~ 229 (307)
T 2ifu_A 221 SY-SIPGFSG 229 (307)
T ss_dssp HT-TSTTSTT
T ss_pred Hh-CCCCCCC
Confidence 99 9998653
No 153
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.00 E-value=2.9e-09 Score=97.62 Aligned_cols=83 Identities=24% Similarity=0.367 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 043158 85 FLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEV 164 (1962)
Q Consensus 85 ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~a 164 (1962)
..++.++|.++... |++++|+.+|.+|++++|+++.+|+++|.++..+|++++|+.+|+++++++|+++.++.++|.+
T Consensus 9 ~~~~~~la~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQ--GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 46889999999999 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcC
Q 043158 165 LIAIG 169 (1962)
Q Consensus 165 L~~LG 169 (1962)
+..+|
T Consensus 87 ~~~~g 91 (91)
T 1na3_A 87 KQKQG 91 (91)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 88765
No 154
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.00 E-value=1e-09 Score=102.81 Aligned_cols=106 Identities=16% Similarity=0.248 Sum_probs=95.2
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRC 109 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~ 109 (1962)
+..+..++..|..+...|++++|...|+++++..+ . ...+|.++|.++... |++++|+.+
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-------~-----------~~~~~~~~a~~~~~~--~~~~~A~~~ 62 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-------E-----------ESKYWLMKGKALYNL--ERYEEAVDC 62 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-------C-----------CHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-------C-----------CHHHHHHHHHHHHHc--cCHHHHHHH
Confidence 34555678899999999999999999999998532 1 136789999999999 899999999
Q ss_pred HHHHHHhCCC--CHHHHHHHHHHHHHc-CChHHHHHHHHHHHhcCCCCH
Q 043158 110 YLQAVEIDTK--DSVVWNQLGTLACSM-GLLSISRWAFEQGLLCSPNNW 155 (1962)
Q Consensus 110 y~rALaLDP~--DaeaW~nLG~al~~L-Gr~eeAr~alErALeLdPd~~ 155 (1962)
|.+|++++|. ++.+|+++|.++..+ |++++|+.+|++++..+|..+
T Consensus 63 ~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 63 YNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 9999999999 999999999999999 999999999999999999864
No 155
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.00 E-value=4.4e-09 Score=118.99 Aligned_cols=136 Identities=13% Similarity=0.041 Sum_probs=112.9
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-
Q 043158 36 TYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQAV- 114 (1962)
Q Consensus 36 lYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rAL- 114 (1962)
.+..|..+...|++++|+..|+++++...... + .. ....+|.++|.++... |++++|+.+|.+|+
T Consensus 118 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~----~-----~~---~~~~~~~~lg~~y~~~--~~~~~A~~~~~kal~ 183 (293)
T 2qfc_A 118 QYYVAAYVLKKVDYEYCILELKKLLNQQLTGI----D-----VY---QNLYIENAIANIYAEN--GYLKKGIDLFEQILK 183 (293)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSS----C-----TT---HHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCC----c-----hH---HHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH
Confidence 45566667788999999999999997532100 0 00 0246899999999999 99999999999999
Q ss_pred --HhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHH-HHHHHHH
Q 043158 115 --EIDTKDS----VVWNQLGTLACSMGLLSISRWAFEQGLLCSPN------NWNCMEKLLEVLIAIGDEVAC-LSVAELI 181 (1962)
Q Consensus 115 --aLDP~Da----eaW~nLG~al~~LGr~eeAr~alErALeLdPd------~~~Al~nLg~aL~~LGdyeeA-L~~~~rA 181 (1962)
...|++. .+++++|.++..+|++++|+.+|++|+++.++ .+.++.++|.++..+|++++| ..++++|
T Consensus 184 ~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 184 QLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 5677654 69999999999999999999999999998754 278899999999999999999 7789999
Q ss_pred HHhC
Q 043158 182 LRHW 185 (1962)
Q Consensus 182 LeLd 185 (1962)
+.+.
T Consensus 264 l~~~ 267 (293)
T 2qfc_A 264 SFFF 267 (293)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8763
No 156
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.00 E-value=2.5e-09 Score=120.92 Aligned_cols=153 Identities=12% Similarity=0.002 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 043158 34 TQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQA 113 (1962)
Q Consensus 34 lalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rA 113 (1962)
..+.+.+..+...|++++|...|+++++..+.. + ........++++|.++... |++++|+.+|.+|
T Consensus 76 ~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~---~---------~~~~~~~~~~~l~~~~~~~--~~~~~Ai~~~~~a 141 (293)
T 3u3w_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYH---P---------EFQQFLQWQYYVAAYVLKK--VDYEYCILELKKL 141 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCC---H---------HHHHHHHHHHHHHHHHTTS--SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhccccCC---h---------HHHHHHHHHHHHHHHHHcc--cCHHHHHHHHHHH
Confidence 445567888899999999999999999854211 0 0111234556799998877 8999999999999
Q ss_pred HHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHh-------cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043158 114 VEIDTKD------SVVWNQLGTLACSMGLLSISRWAFEQGLL-------CSPNNWNCMEKLLEVLIAIGDEVACLSVAEL 180 (1962)
Q Consensus 114 LaLDP~D------aeaW~nLG~al~~LGr~eeAr~alErALe-------LdPd~~~Al~nLg~aL~~LGdyeeAL~~~~r 180 (1962)
+.+.+.. ..+++++|.++..+|++++|+.+|++|++ ..|..+.++.++|.++..+|+|++|+.++++
T Consensus 142 l~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~ 221 (293)
T 3u3w_A 142 LNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNK 221 (293)
T ss_dssp HHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 9976543 34899999999999999999999999994 2334456889999999999999999999999
Q ss_pred HHHhCCCC------HHHHHHHHHhhh
Q 043158 181 ILRHWPSH------SRALHVKNTIEE 200 (1962)
Q Consensus 181 ALeLdPd~------a~Al~lk~~I~~ 200 (1962)
|+++.+.. +.+++.++.+..
T Consensus 222 al~~~~~~~~~~~~~~~~~~lg~~~~ 247 (293)
T 3u3w_A 222 AIEISCRINSMALIGQLYYQRGECLR 247 (293)
T ss_dssp HHHHHHHTTBCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 99986544 556666666543
No 157
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.99 E-value=8e-10 Score=128.12 Aligned_cols=140 Identities=13% Similarity=0.102 Sum_probs=124.5
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRC 109 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~ 109 (1962)
+..+..++..|..+...|++++|+..|+++++..+.. ......+|.++|.++... |++++|+.+
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--------------~~~~~~~~~~lg~~~~~~--g~~~~A~~~ 108 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTED--------------LRTLSAIYSQLGNAYFYL--GDYNKAMQY 108 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSC--------------HHHHHHHHHHHHHHHHHH--TCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccC--------------hhHHHHHHHHHHHHHHHC--CCHHHHHHH
Confidence 4567889999999999999999999999999853210 011246899999999999 899999999
Q ss_pred HHHHHHh------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCC-------
Q 043158 110 YLQAVEI------DTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLC------SPNNWNCMEKLLEVLIAIGD------- 170 (1962)
Q Consensus 110 y~rALaL------DP~DaeaW~nLG~al~~LGr~eeAr~alErALeL------dPd~~~Al~nLg~aL~~LGd------- 170 (1962)
|.+|+++ +|..+.+|+++|.++..+|++++|+.+|++++++ .|....++.++|.++..+|+
T Consensus 109 ~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~ 188 (411)
T 4a1s_A 109 HKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNP 188 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccc
Confidence 9999999 7888999999999999999999999999999999 67778899999999999999
Q ss_pred ----------HHHHHHHHHHHHHhC
Q 043158 171 ----------EVACLSVAELILRHW 185 (1962)
Q Consensus 171 ----------yeeAL~~~~rALeLd 185 (1962)
+++|+.++++++++.
T Consensus 189 ~~~~~~a~~~~~~A~~~~~~al~~~ 213 (411)
T 4a1s_A 189 GKFGDDVKEALTRAVEFYQENLKLM 213 (411)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 999999999998864
No 158
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.99 E-value=2.9e-09 Score=123.88 Aligned_cols=138 Identities=14% Similarity=0.068 Sum_probs=118.1
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 043158 36 TYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQAVE 115 (1962)
Q Consensus 36 lYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rALa 115 (1962)
....|..|...|+|++|.++|+.++...+ + +. +++++|.++++. +++++|+.+|.+++.
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~p-------~-----------~~-~~~~~a~l~~~~--~r~~dA~~~l~~a~~ 163 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVAGS-------E-----------HL-VAWMKAVVYGAA--ERWTDVIDQVKSAGK 163 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCTTC-------H-----------HH-HHHHHHHHHHHT--TCHHHHHHHHTTGGG
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCC-------c-----------hH-HHHHHHHHHHHc--CCHHHHHHHHHHhhc
Confidence 34567888999999999999998876432 1 23 789999999999 999999999998887
Q ss_pred hCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 043158 116 IDTKD--SVVWNQLGTLACSMGLLSISRWAFEQGLLCS--PN-NWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSR 190 (1962)
Q Consensus 116 LDP~D--aeaW~nLG~al~~LGr~eeAr~alErALeLd--Pd-~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~ 190 (1962)
..+.. ..+++++|.++..+|++++|+.+|++++... |. .+++++++|.+|..+|+.++|...|++++..+|+ +.
T Consensus 164 ~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~ 242 (282)
T 4f3v_A 164 WPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PK 242 (282)
T ss_dssp CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HH
T ss_pred cCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HH
Confidence 64322 4699999999999999999999999999766 66 6789999999999999999999999999999999 76
Q ss_pred HHHHH
Q 043158 191 ALHVK 195 (1962)
Q Consensus 191 Al~lk 195 (1962)
+...+
T Consensus 243 ~~~aL 247 (282)
T 4f3v_A 243 VAAAL 247 (282)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55444
No 159
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.98 E-value=2.9e-09 Score=111.01 Aligned_cols=141 Identities=14% Similarity=0.171 Sum_probs=117.1
Q ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 043158 31 SHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCY 110 (1962)
Q Consensus 31 eeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y 110 (1962)
..+..++..|..+...|++++|...|+++++... .. + . ......++.++|.++... |++++|+++|
T Consensus 24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-------~~-~--~--~~~~~~~~~~l~~~~~~~--g~~~~A~~~~ 89 (203)
T 3gw4_A 24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQ-------KS-G--D--HTAEHRALHQVGMVERMA--GNWDAARRCF 89 (203)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------TT-C--C--HHHHHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH-------Hc-C--C--cHHHHHHHHHHHHHHHHc--CCHHHHHHHH
Confidence 4677889999999999999999999999997411 00 0 0 011357899999999999 9999999999
Q ss_pred HHHHHh---CC----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--CC----HHHHHHHHHHHHHcCCHHHHHHH
Q 043158 111 LQAVEI---DT----KDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSP--NN----WNCMEKLLEVLIAIGDEVACLSV 177 (1962)
Q Consensus 111 ~rALaL---DP----~DaeaW~nLG~al~~LGr~eeAr~alErALeLdP--d~----~~Al~nLg~aL~~LGdyeeAL~~ 177 (1962)
.+|+++ .+ ..+.+++++|.++..+|++++|+.+|++++.+.+ ++ ..++.++|.++..+|++++|..+
T Consensus 90 ~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 169 (203)
T 3gw4_A 90 LEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQH 169 (203)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 999999 44 3367899999999999999999999999997643 22 33468999999999999999999
Q ss_pred HHHHHHhC
Q 043158 178 AELILRHW 185 (1962)
Q Consensus 178 ~~rALeLd 185 (1962)
+++++++.
T Consensus 170 ~~~al~~~ 177 (203)
T 3gw4_A 170 WLRARDIF 177 (203)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999874
No 160
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.97 E-value=2.9e-09 Score=124.33 Aligned_cols=154 Identities=16% Similarity=0.105 Sum_probs=116.6
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCc-ccc----hhc----c-------CC---CCCchhhhH----------
Q 043158 32 HLTQTYHEGLLKLQSKEYDKAQELLESVLKDPL-IAN----AQA----A-------DG---KSSDGHLLQ---------- 82 (1962)
Q Consensus 32 eAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~-lk~----a~~----~-------d~---~~s~s~lLq---------- 82 (1962)
....+|.+|..+...|++++|+..|+++++... ..+ +.. + +. ......++.
T Consensus 100 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~ 179 (378)
T 3q15_A 100 KYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSI 179 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchh
Confidence 455667777777777777777777777765421 000 000 0 00 000011111
Q ss_pred HhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHh-----cC
Q 043158 83 LRFLALKNLATVFLQQGSSHYESALRCYLQAVEIDT------KDSVVWNQLGTLACSMGLLSISRWAFEQGLL-----CS 151 (1962)
Q Consensus 83 L~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP------~DaeaW~nLG~al~~LGr~eeAr~alErALe-----Ld 151 (1962)
....++.++|.++... |++++|+++|.+|+++.+ ..+.+++++|.++..+|++++|+.+|++|++ .+
T Consensus 180 ~~~~~~~~lg~~y~~~--~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~ 257 (378)
T 3q15_A 180 RTIQSLFVIAGNYDDF--KHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP 257 (378)
T ss_dssp HHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG
T ss_pred hHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC
Confidence 1356889999999999 999999999999999743 2357899999999999999999999999999 88
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 043158 152 PNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPS 187 (1962)
Q Consensus 152 Pd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd 187 (1962)
|..+.++.++|.++..+|++++|+.++++++++.+.
T Consensus 258 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 258 DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA 293 (378)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998543
No 161
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.97 E-value=1.1e-09 Score=125.33 Aligned_cols=139 Identities=15% Similarity=0.078 Sum_probs=122.1
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRC 109 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~ 109 (1962)
+..+..++..|..+...|++++|+..|+++++..+.. . .....+|.++|.++... |++++|+.+
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~-----------~---~~~~~~~~~l~~~~~~~--g~~~~A~~~ 69 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTED-----------L---KTLSAIYSQLGNAYFYL--HDYAKALEY 69 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSC-----------H---HHHHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccc-----------H---HHHHHHHHHHHHHHHHh--cCHHHHHHH
Confidence 5567889999999999999999999999999853210 0 11246899999999999 999999999
Q ss_pred HHHHHHh------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCC-------
Q 043158 110 YLQAVEI------DTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNN------WNCMEKLLEVLIAIGD------- 170 (1962)
Q Consensus 110 y~rALaL------DP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~------~~Al~nLg~aL~~LGd------- 170 (1962)
|.+|+.+ .|..+.+|+++|.++..+|++++|+.+|++++.+.|.. +.++.++|.++..+|+
T Consensus 70 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~ 149 (406)
T 3sf4_A 70 HHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGP 149 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC----
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCccccccc
Confidence 9999998 56678999999999999999999999999999998764 4589999999999999
Q ss_pred -------------HHHHHHHHHHHHHh
Q 043158 171 -------------EVACLSVAELILRH 184 (1962)
Q Consensus 171 -------------yeeAL~~~~rALeL 184 (1962)
+++|+.++.+++++
T Consensus 150 ~~~~~~~~~a~~~~~~A~~~~~~al~~ 176 (406)
T 3sf4_A 150 QDVGEFPEEVRDALQAAVDFYEENLSL 176 (406)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999887
No 162
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.97 E-value=6.1e-09 Score=124.42 Aligned_cols=112 Identities=11% Similarity=-0.033 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH--------HHHHHHHHHHhcCCCCH
Q 043158 85 FLALKNLATVFLQQGSS-HYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLS--------ISRWAFEQGLLCSPNNW 155 (1962)
Q Consensus 85 ylAykNLG~lLl~~g~G-r~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~e--------eAr~alErALeLdPd~~ 155 (1962)
|.+|++++.++.... + +++++++++.++++++|.+..+|+..+-++..+|+++ +++.+++++|+.+|.+.
T Consensus 123 y~aW~hR~wlL~~l~-~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~ 201 (349)
T 3q7a_A 123 YQVWHHRLLLLDRIS-PQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNN 201 (349)
T ss_dssp HHHHHHHHHHHHHHC-CSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCH
Confidence 567777777776652 3 5677777777777777777777777777777777666 77777777777777777
Q ss_pred HHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 043158 156 NCMEKLLEVLIAIGD-------EVACLSVAELILRHWPSHSRALHVKNT 197 (1962)
Q Consensus 156 ~Al~nLg~aL~~LGd-------yeeAL~~~~rALeLdPd~a~Al~lk~~ 197 (1962)
.||.+++.++..+|+ +++++.++.+++.++|++..||+.+..
T Consensus 202 SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~ 250 (349)
T 3q7a_A 202 SAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRG 250 (349)
T ss_dssp HHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 777777777777765 567777777777777777777765433
No 163
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.95 E-value=3.2e-09 Score=120.15 Aligned_cols=133 Identities=11% Similarity=0.055 Sum_probs=109.3
Q ss_pred HHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH---
Q 043158 39 EGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQAVE--- 115 (1962)
Q Consensus 39 kAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rALa--- 115 (1962)
.|..+...|++++|+..|+++++...-. . + .. ....++.|+|.++... |++++|+.+|.+|++
T Consensus 121 l~~~~~~~~~~~~Ai~~~~~al~~~~~~---~-~---~~-----~~~~~~~~lg~~y~~~--g~~~~A~~~~~~al~~~~ 186 (293)
T 3u3w_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTG---I-D---VY-----QNLYIENAIANIYAEN--GYLKKGIDLFEQILKQLE 186 (293)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHTCCCC---S-C---TT-----HHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcccCHHHHHHHHHHHHHHhccc---c-c---HH-----HHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHH
Confidence 4555566689999999999999842100 0 1 00 1235799999999999 899999999999995
Q ss_pred ----hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Q 043158 116 ----IDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNN------WNCMEKLLEVLIAIG-DEVACLSVAELILRH 184 (1962)
Q Consensus 116 ----LDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~------~~Al~nLg~aL~~LG-dyeeAL~~~~rALeL 184 (1962)
..+..+.+++++|.++..+|++++|+.+|++|+++.+.. +.++.++|.++..+| ++++|+.+|++|+.+
T Consensus 187 ~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 187 ALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 233346799999999999999999999999999988655 889999999999999 579999999999987
Q ss_pred C
Q 043158 185 W 185 (1962)
Q Consensus 185 d 185 (1962)
.
T Consensus 267 ~ 267 (293)
T 3u3w_A 267 F 267 (293)
T ss_dssp H
T ss_pred H
Confidence 3
No 164
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.95 E-value=1.7e-09 Score=112.32 Aligned_cols=100 Identities=17% Similarity=0.117 Sum_probs=93.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHcCCH--HHHHHH
Q 043158 101 SHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEV-LIAIGDE--VACLSV 177 (1962)
Q Consensus 101 Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~a-L~~LGdy--eeAL~~ 177 (1962)
|++++|+..|.+|+..+|+++.+|+.+|.++...|++++|+.+|+++++++|+++.++.++|.+ +...|++ ++|+.+
T Consensus 24 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~ 103 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAM 103 (177)
T ss_dssp ---CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 7899999999999999999999999999999999999999999999999999999999999999 7799999 999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHhhh
Q 043158 178 AELILRHWPSHSRALHVKNTIEE 200 (1962)
Q Consensus 178 ~~rALeLdPd~a~Al~lk~~I~~ 200 (1962)
++++++++|+++.++..++.+..
T Consensus 104 ~~~al~~~p~~~~~~~~la~~~~ 126 (177)
T 2e2e_A 104 IDKALALDSNEITALMLLASDAF 126 (177)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHH
Confidence 99999999999999988877644
No 165
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.94 E-value=3.9e-09 Score=123.26 Aligned_cols=115 Identities=9% Similarity=-0.071 Sum_probs=100.5
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---
Q 043158 84 RFLALKNLATVFLQQGSSHYESALRCYLQAVEIDTK-------DSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPN--- 153 (1962)
Q Consensus 84 ~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~-------DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd--- 153 (1962)
...++.++|.++... |++++|+.+|.+|+++.+. .+.+++++|.++..+|++++|+.+|++|+++.+.
T Consensus 140 ~a~~~~~lg~~y~~~--~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~ 217 (378)
T 3q15_A 140 KAEFHFKVAEAYYHM--KQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN 217 (378)
T ss_dssp HHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC
Confidence 457899999999999 9999999999999998553 3668999999999999999999999999997532
Q ss_pred ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHhhh
Q 043158 154 ---NWNCMEKLLEVLIAIGDEVACLSVAELILR-----HWPSHSRALHVKNTIEE 200 (1962)
Q Consensus 154 ---~~~Al~nLg~aL~~LGdyeeAL~~~~rALe-----LdPd~a~Al~lk~~I~~ 200 (1962)
...++.++|.++..+|++++|+.++++|++ .+|..+.++..++.+..
T Consensus 218 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 272 (378)
T 3q15_A 218 DRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLC 272 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHH
Confidence 256789999999999999999999999999 78887777777766643
No 166
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.94 E-value=1.5e-08 Score=120.20 Aligned_cols=141 Identities=14% Similarity=0.093 Sum_probs=126.1
Q ss_pred HHHHHHHCCCHH-HHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCC----------HHHHH
Q 043158 39 EGLLKLQSKEYD-KAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSH----------YESAL 107 (1962)
Q Consensus 39 kAL~L~qqGRfe-EA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr----------~eEAL 107 (1962)
..+...+.|.+. +|++++.++|...| + +|.+|+.+|.++... ++ +++++
T Consensus 35 ~~~~~~~~~e~s~eaL~~t~~~L~~nP-------~-----------~ytaWn~Rr~iL~~l--~~~~~~~~~~~~l~~EL 94 (331)
T 3dss_A 35 AVFQKRQAGELDESVLELTSQILGANP-------D-----------FATLWNCRREVLQHL--ETEKSPEESAALVKAEL 94 (331)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHTTCT-------T-----------CHHHHHHHHHHHHHH--HHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCc-------h-----------hHHHHHHHHHHHHHh--cccccchhhhHHHHHHH
Confidence 344445667776 79999999998754 2 478999999999877 44 78999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh
Q 043158 108 RCYLQAVEIDTKDSVVWNQLGTLACSMGL--LSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGD-EVACLSVAELILRH 184 (1962)
Q Consensus 108 e~y~rALaLDP~DaeaW~nLG~al~~LGr--~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGd-yeeAL~~~~rALeL 184 (1962)
.++.+++..+|.++.+|++.+.++..+|+ +++++.++++++++||.+..||...+.++..+|+ +++++.++.++++.
T Consensus 95 ~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~ 174 (331)
T 3dss_A 95 GFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR 174 (331)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999995 8999999999999999999999999999999999 69999999999999
Q ss_pred CCCCHHHHHHHHHhh
Q 043158 185 WPSHSRALHVKNTIE 199 (1962)
Q Consensus 185 dPd~a~Al~lk~~I~ 199 (1962)
+|.+..||+.+..+.
T Consensus 175 ~p~N~SAW~~R~~ll 189 (331)
T 3dss_A 175 NFSNYSSWHYRSCLL 189 (331)
T ss_dssp CSCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999997763
No 167
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.93 E-value=2.4e-09 Score=117.72 Aligned_cols=137 Identities=15% Similarity=0.092 Sum_probs=119.3
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 043158 32 HLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYL 111 (1962)
Q Consensus 32 eAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~ 111 (1962)
.+..++..|..+...|++++|+..|+++++..+.. ......++.++|.++... |++++|+.+|.
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--------------~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~ 67 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTED--------------LKTLSAIYSQLGNAYFYL--HDYAKALEYHH 67 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSC--------------HHHHHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCccc--------------HHHHHHHHHHHHHHHHHc--CCHHHHHHHHH
Confidence 35678899999999999999999999999853210 011246889999999999 89999999999
Q ss_pred HHHHh------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCC---------
Q 043158 112 QAVEI------DTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNN------WNCMEKLLEVLIAIGD--------- 170 (1962)
Q Consensus 112 rALaL------DP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~------~~Al~nLg~aL~~LGd--------- 170 (1962)
+|+++ .|..+.+|+.+|.++..+|++++|+.+|++++++.|.. ..++.++|.++..+|+
T Consensus 68 ~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 147 (338)
T 3ro2_A 68 HDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQD 147 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC-
T ss_pred HHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhh
Confidence 99998 66778999999999999999999999999999987754 3489999999999999
Q ss_pred -----------HHHHHHHHHHHHHh
Q 043158 171 -----------EVACLSVAELILRH 184 (1962)
Q Consensus 171 -----------yeeAL~~~~rALeL 184 (1962)
+++|+.++++++.+
T Consensus 148 ~~~~~~~a~~~~~~A~~~~~~a~~~ 172 (338)
T 3ro2_A 148 TGEFPEDVRNALQAAVDLYEENLSL 172 (338)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999998876
No 168
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.93 E-value=3.3e-09 Score=121.35 Aligned_cols=152 Identities=14% Similarity=-0.008 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 043158 33 LTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQ 112 (1962)
Q Consensus 33 AlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~r 112 (1962)
+..++..|..+...|++++|...|+++++..+-. . + ......++.++|.++... |++++|+.+|.+
T Consensus 187 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~-~--------~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~ 252 (406)
T 3sf4_A 187 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF---G-D--------KAAERRAYSNLGNAYIFL--GEFETASEYYKK 252 (406)
T ss_dssp HHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT---T-C--------HHHHHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc---C-C--------cHHHHHHHHHHHHHHHHc--CChHHHHHHHHH
Confidence 3456667777888899999999999999752100 0 0 011346899999999999 999999999999
Q ss_pred HHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043158 113 AVEIDTKD------SVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNN------WNCMEKLLEVLIAIGDEVACLSVAEL 180 (1962)
Q Consensus 113 ALaLDP~D------aeaW~nLG~al~~LGr~eeAr~alErALeLdPd~------~~Al~nLg~aL~~LGdyeeAL~~~~r 180 (1962)
|+.+.|.. +.+++++|.++..+|++++|+.+|++++++.+.. +.++.++|.++..+|++++|+.++++
T Consensus 253 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 332 (406)
T 3sf4_A 253 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 332 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99998877 8899999999999999999999999999987655 67899999999999999999999999
Q ss_pred HHHhCCCC------HHHHHHHHHh
Q 043158 181 ILRHWPSH------SRALHVKNTI 198 (1962)
Q Consensus 181 ALeLdPd~------a~Al~lk~~I 198 (1962)
++++.+.. ..++..++.+
T Consensus 333 al~~~~~~~~~~~~~~~~~~l~~~ 356 (406)
T 3sf4_A 333 HLEISREVGDKSGELTARLNLSDL 356 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcchhHHHHHHHHH
Confidence 99984332 4455555444
No 169
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.91 E-value=1.5e-08 Score=110.36 Aligned_cols=143 Identities=12% Similarity=-0.032 Sum_probs=121.0
Q ss_pred ccHHHHHHHHHHHHHCC----CHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHH----cCCCC
Q 043158 31 SHLTQTYHEGLLKLQSK----EYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQ----QGSSH 102 (1962)
Q Consensus 31 eeAlalYqkAL~L~qqG----RfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~----~g~Gr 102 (1962)
..+.+.+..|..+.. | ++++|...|+++++.. ...++.+||.++.. . ++
T Consensus 48 g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g--------------------~~~a~~~Lg~~y~~g~g~~--~d 104 (212)
T 3rjv_A 48 GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG--------------------SKSGEIVLARVLVNRQAGA--TD 104 (212)
T ss_dssp TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHTCGGGSS--CC
T ss_pred CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC--------------------CHHHHHHHHHHHHcCCCCc--cC
Confidence 345666677776766 6 8999999999997531 24789999999987 5 79
Q ss_pred HHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-C-----C
Q 043158 103 YESALRCYLQAVEIDTK--DSVVWNQLGTLACS----MGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAI-G-----D 170 (1962)
Q Consensus 103 ~eEALe~y~rALaLDP~--DaeaW~nLG~al~~----LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~L-G-----d 170 (1962)
+++|+.+|++|++.+|. ++.++++||.++.. .+++++|+..|++|+++ |+++.++.+||.++..- | +
T Consensus 105 ~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d 183 (212)
T 3rjv_A 105 VAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPN 183 (212)
T ss_dssp HHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCC
T ss_pred HHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCC
Confidence 99999999999999994 59999999999999 89999999999999999 88899999999998764 4 9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHhh
Q 043158 171 EVACLSVAELILRHWPSHSRALHVKNTIE 199 (1962)
Q Consensus 171 yeeAL~~~~rALeLdPd~a~Al~lk~~I~ 199 (1962)
+++|+.+|++|++.. +..|...+..+.
T Consensus 184 ~~~A~~~~~~A~~~g--~~~A~~~l~~l~ 210 (212)
T 3rjv_A 184 KQKALHWLNVSCLEG--FDTGCEEFDRIS 210 (212)
T ss_dssp HHHHHHHHHHHHHHT--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHhh
Confidence 999999999999985 556666666553
No 170
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.90 E-value=2.1e-08 Score=122.74 Aligned_cols=150 Identities=14% Similarity=0.100 Sum_probs=126.6
Q ss_pred cccHHHHHHHHHHHHH-------CCCHH-------HHHHHHHHHhc-CCcccchhccCCCCCchhhhHHhHHHHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQ-------SKEYD-------KAQELLESVLK-DPLIANAQAADGKSSDGHLLQLRFLALKNLATV 94 (1962)
Q Consensus 30 eeeAlalYqkAL~L~q-------qGRfe-------EA~eaY~raLa-~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~l 94 (1962)
+..+..++..|..+.+ .|+++ +|.+.|+++++ ..| + ....|.++|.+
T Consensus 269 p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p-------~-----------~~~l~~~~~~~ 330 (530)
T 2ooe_A 269 GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-------K-----------NMLLYFAYADY 330 (530)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCS-------S-----------CHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCc-------c-----------cHHHHHHHHHH
Confidence 3445556666665665 79987 99999999997 432 1 24689999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHcCCHH
Q 043158 95 FLQQGSSHYESALRCYLQAVEIDTKDS-VVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEV-LIAIGDEV 172 (1962)
Q Consensus 95 Ll~~g~Gr~eEALe~y~rALaLDP~Da-eaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~a-L~~LGdye 172 (1962)
+... |++++|...|++|++++|.++ .+|.++|.++.+.|++++|+.+|++|++..|..+..+...+.+ +...|+++
T Consensus 331 ~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~ 408 (530)
T 2ooe_A 331 EESR--MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKS 408 (530)
T ss_dssp HHHT--TCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHH
T ss_pred HHhc--CCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChh
Confidence 9999 899999999999999999996 6999999999999999999999999999999988888777655 34699999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHhh
Q 043158 173 ACLSVAELILRHWPSHSRALHVKNTIE 199 (1962)
Q Consensus 173 eAL~~~~rALeLdPd~a~Al~lk~~I~ 199 (1962)
+|..+|+++++..|+++.+|.....+.
T Consensus 409 ~A~~~~e~al~~~p~~~~~~~~~~~~~ 435 (530)
T 2ooe_A 409 VAFKIFELGLKKYGDIPEYVLAYIDYL 435 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 999999999999999998887766653
No 171
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.89 E-value=1.8e-09 Score=101.77 Aligned_cols=92 Identities=10% Similarity=0.087 Sum_probs=83.7
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 043158 88 LKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSV-VWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLI 166 (1962)
Q Consensus 88 ykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~Dae-aW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~ 166 (1962)
..++|..+... |++++|+..|++|++.+|+++. +|+++|.++..+|++++|+.+|+++++++|+++.++.+
T Consensus 3 ~~~~a~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~------ 74 (99)
T 2kc7_A 3 QLKTIKELINQ--GDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR------ 74 (99)
T ss_dssp THHHHHHHHHH--TCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH------
T ss_pred HHHHHHHHHHc--CCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH------
Confidence 35789999999 8999999999999999999999 99999999999999999999999999999999999855
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCH
Q 043158 167 AIGDEVACLSVAELILRHWPSHS 189 (1962)
Q Consensus 167 ~LGdyeeAL~~~~rALeLdPd~a 189 (1962)
+.+.+++..|++++..+|+++
T Consensus 75 --~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 75 --KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp --HHHHHHHHHHCCTTHHHHCCS
T ss_pred --HHHHHHHHHHHHHhccCcccc
Confidence 567788888888888888764
No 172
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.89 E-value=2.1e-08 Score=122.75 Aligned_cols=142 Identities=12% Similarity=0.047 Sum_probs=123.9
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRC 109 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~ 109 (1962)
+..+..++..|..+.+.|++++|.++|+++++.++.. ...+|.++|.++.+. |++++|...
T Consensus 318 p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-----------------~~~~~~~~~~~~~~~--~~~~~A~~~ 378 (530)
T 2ooe_A 318 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDID-----------------PTLVYIQYMKFARRA--EGIKSGRMI 378 (530)
T ss_dssp SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSC-----------------HHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccC-----------------chHHHHHHHHHHHHh--cCHHHHHHH
Confidence 4556667777777888999999999999999875411 014799999999988 899999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHH-HHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 043158 110 YLQAVEIDTKDSVVWNQLGTL-ACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSH 188 (1962)
Q Consensus 110 y~rALaLDP~DaeaW~nLG~a-l~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~ 188 (1962)
|.+|++..|.++.+|...|.+ +...|++++|+.+|++|++.+|+++.+|.+++.++..+|+++.|...|++|+...|.+
T Consensus 379 ~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~ 458 (530)
T 2ooe_A 379 FKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 458 (530)
T ss_dssp HHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSC
T ss_pred HHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCC
Confidence 999999999998888877766 4569999999999999999999999999999999999999999999999999998766
Q ss_pred HH
Q 043158 189 SR 190 (1962)
Q Consensus 189 a~ 190 (1962)
+.
T Consensus 459 ~~ 460 (530)
T 2ooe_A 459 PE 460 (530)
T ss_dssp GG
T ss_pred HH
Confidence 53
No 173
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.87 E-value=7.7e-09 Score=113.76 Aligned_cols=141 Identities=14% Similarity=0.007 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 043158 33 LTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQ 112 (1962)
Q Consensus 33 AlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~r 112 (1962)
+..++..|..+...|++++|...|+++++..+.. . + ......++.++|.++... |++++|+.+|.+
T Consensus 183 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~-~--------~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~ 248 (338)
T 3ro2_A 183 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF---G-D--------KAAERRAYSNLGNAYIFL--GEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---T-C--------HHHHHHHHHHHHHHHHHH--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc---C-C--------hHHHHHHHHHHHHHHHHc--CCHHHHHHHHHH
Confidence 3456667777888899999999999998752100 0 0 011246899999999999 899999999999
Q ss_pred HHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043158 113 AVEIDTKD------SVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNN------WNCMEKLLEVLIAIGDEVACLSVAEL 180 (1962)
Q Consensus 113 ALaLDP~D------aeaW~nLG~al~~LGr~eeAr~alErALeLdPd~------~~Al~nLg~aL~~LGdyeeAL~~~~r 180 (1962)
|+.+.|.. +.++.++|.++..+|++++|+.+|++++.+.|.. ..++.++|.++..+|++++|..++++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 99998877 8899999999999999999999999999987644 55889999999999999999999999
Q ss_pred HHHhCCC
Q 043158 181 ILRHWPS 187 (1962)
Q Consensus 181 ALeLdPd 187 (1962)
++++.+.
T Consensus 329 a~~~~~~ 335 (338)
T 3ro2_A 329 HLEISRE 335 (338)
T ss_dssp HHHC---
T ss_pred HHHHHHh
Confidence 9998765
No 174
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.86 E-value=7.5e-09 Score=120.04 Aligned_cols=144 Identities=15% Similarity=0.040 Sum_probs=121.7
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 043158 32 HLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYL 111 (1962)
Q Consensus 32 eAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~ 111 (1962)
.+..++..|..+...|++++|+..|+++++..+.. . + ......++.++|.++... |++++|+.+|.
T Consensus 222 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~-~--------~~~~~~~~~~la~~~~~~--g~~~~A~~~~~ 287 (411)
T 4a1s_A 222 QGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF---G-D--------RAAERRANSNLGNSHIFL--GQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---T-C--------HHHHHHHHHHHHHHHHTT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc---C-C--------cHHHHHHHHHHHHHHHHC--cCHHHHHHHHH
Confidence 34566777888899999999999999999752100 0 0 011246889999999999 99999999999
Q ss_pred HHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 043158 112 QAVEIDTKD------SVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNN------WNCMEKLLEVLIAIGDEVACLSVAE 179 (1962)
Q Consensus 112 rALaLDP~D------aeaW~nLG~al~~LGr~eeAr~alErALeLdPd~------~~Al~nLg~aL~~LGdyeeAL~~~~ 179 (1962)
+|+++.|.. +.+|.++|.++..+|++++|+.+|++++.+.+.. ..++.++|.++..+|++++|+.+++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 999999865 8899999999999999999999999999986543 5589999999999999999999999
Q ss_pred HHHHhCCCCH
Q 043158 180 LILRHWPSHS 189 (1962)
Q Consensus 180 rALeLdPd~a 189 (1962)
+++++.+...
T Consensus 368 ~al~~~~~~~ 377 (411)
T 4a1s_A 368 QHLQLAXXXX 377 (411)
T ss_dssp HHHHHCCHHH
T ss_pred HHHHHHhhcc
Confidence 9999987643
No 175
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.85 E-value=2.3e-08 Score=119.43 Aligned_cols=181 Identities=16% Similarity=0.142 Sum_probs=148.0
Q ss_pred HCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCCCCHHH
Q 043158 45 QSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSS-HYESALRCYLQAVEIDTKDSVV 123 (1962)
Q Consensus 45 qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~G-r~eEALe~y~rALaLDP~Daea 123 (1962)
..++.++|++++.++|...| + +|.+|+.+|.++... | ++++|++++.++|..+|.+..+
T Consensus 66 ~~e~se~AL~lt~~~L~~nP-------~-----------~ytaWn~R~~iL~~l--~~~l~eEL~~~~~~L~~nPKny~a 125 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNP-------A-----------HYTVWQYRFSLLTSL--NKSLEDELRLMNEFAVQNLKSYQV 125 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCT-------T-----------CHHHHHHHHHHHHHT--TCCHHHHHHHHHHHHHTTCCCHHH
T ss_pred hCCCCHHHHHHHHHHHHhCc-------h-----------hHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHhCCCcHHH
Confidence 34666899999999998643 2 478999999999998 6 6999999999999999999999
Q ss_pred HHHHHHHHHHc-C-ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHhCCCCHHHHH
Q 043158 124 WNQLGTLACSM-G-LLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEV--------ACLSVAELILRHWPSHSRALH 193 (1962)
Q Consensus 124 W~nLG~al~~L-G-r~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdye--------eAL~~~~rALeLdPd~a~Al~ 193 (1962)
|++.+.++..+ + ++++++.+++++|+.+|.+..||...+-++..+|+++ +++.++.++++.+|.+..||+
T Consensus 126 W~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~ 205 (349)
T 3q7a_A 126 WHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWG 205 (349)
T ss_dssp HHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 99999999999 8 9999999999999999999999999999999999988 999999999999999999999
Q ss_pred HHHHhhhcCCCCCCCCCccccCccchhhHHHHhhhHHhhhhhhhhhhhccccccccccC-hhhHHHHHHHHHHHhCC
Q 043158 194 VKNTIEETEPVPYAPRGIDKLEPKHVRLKFIDKRKAAAEILDEGVVCKKLNQNIELCLA-ESSWAALADTLLDILCP 269 (1962)
Q Consensus 194 lk~~I~~adP~~f~P~~~daL~p~~~~L~~i~krk~ed~~~dEAle~Rk~~~al~L~l~-~~SW~~LG~SLL~Ll~~ 269 (1962)
.+..+....... +. . .+.++++++. ..+++.+.|. +..|..+.-.|......
T Consensus 206 ~R~~lL~~l~~~--~~--------~------------~~~~~eELe~--~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 206 WRWYLRVSRPGA--ET--------S------------SRSLQDELIY--ILKSIHLIPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHTTSTTC--CC--------C------------HHHHHHHHHH--HHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhcccc--cc--------c------------hHHHHHHHHH--HHHHHHhCCCCHHHHHHHHHHHHhcCCC
Confidence 998885422110 00 0 0022333433 3446667776 88899988777655433
No 176
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.82 E-value=1.5e-08 Score=98.44 Aligned_cols=101 Identities=24% Similarity=0.346 Sum_probs=86.6
Q ss_pred HHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 043158 50 DKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGT 129 (1962)
Q Consensus 50 eEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~ 129 (1962)
++|++.|+++++..| + ...+|.++|.++... |++++|+.+|++|++++|+++.+|+++|.
T Consensus 2 ~~a~~~~~~al~~~p-------~-----------~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~ 61 (115)
T 2kat_A 2 QAITERLEAMLAQGT-------D-----------NMLLRFTLGKTYAEH--EQFDAALPHLRAALDFDPTYSVAWKWLGK 61 (115)
T ss_dssp CCHHHHHHHHHTTTC-------C-----------CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCC-------C-----------cHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHHCCCcHHHHHHHHH
Confidence 357888999998643 1 246899999999999 99999999999999999999999999999
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCC
Q 043158 130 LACSMGLLSISRWAFEQGLLCSPN--NWNCMEKLLEVLIAIGD 170 (1962)
Q Consensus 130 al~~LGr~eeAr~alErALeLdPd--~~~Al~nLg~aL~~LGd 170 (1962)
++..+|++++|+.+|+++++++|+ +..++..+...+..+|+
T Consensus 62 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~l~~l~~ 104 (115)
T 2kat_A 62 TLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAR 104 (115)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhcc
Confidence 999999999999999999999984 45666666666665554
No 177
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.82 E-value=2.1e-08 Score=104.60 Aligned_cols=123 Identities=16% Similarity=0.141 Sum_probs=102.2
Q ss_pred HHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH------h
Q 043158 43 KLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQAVE------I 116 (1962)
Q Consensus 43 L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rALa------L 116 (1962)
+...|++++|.+.++.+...+. . ...++.++|.++... |++++|+.+|.+|++ .
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~-------~-----------~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~~~~~~ 61 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPA-------T-----------ASGARFMLGYVYAFM--DRFDEARASFQALQQQAQKSGD 61 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTT-------T-----------HHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHTTCC
T ss_pred ccccccHHHHHHHHHHhcCChH-------H-----------HHHHHHHHHHHHHHh--CcHHHHHHHHHHHHHHHHHcCC
Confidence 3468999999996666544321 0 347899999999999 999999999999999 6
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 043158 117 DTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLC---SPN----NWNCMEKLLEVLIAIGDEVACLSVAELILRHW 185 (1962)
Q Consensus 117 DP~DaeaW~nLG~al~~LGr~eeAr~alErALeL---dPd----~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLd 185 (1962)
.|..+.+++++|.++..+|++++|+.+|++++++ .|+ ...++.++|.++..+|++++|+.++++++++.
T Consensus 62 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 137 (203)
T 3gw4_A 62 HTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYA 137 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 6777899999999999999999999999999998 443 35678999999999999999999999999763
No 178
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.80 E-value=7e-09 Score=100.06 Aligned_cols=73 Identities=11% Similarity=-0.020 Sum_probs=63.7
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 043158 116 IDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSH 188 (1962)
Q Consensus 116 LDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~ 188 (1962)
.+|+++.+|+++|.++..+|++++|+.+|+++++++|+++.++.++|.++..+|++++|+..|++++++.|..
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 4789999999999999999999999999999999999999999999999999999999999999999887654
No 179
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.79 E-value=5.4e-08 Score=112.32 Aligned_cols=141 Identities=13% Similarity=0.024 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 043158 33 LTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQ 112 (1962)
Q Consensus 33 AlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~r 112 (1962)
+...+..|..+...|++++|...++++++..+.. + . .....++.++|.++... |++++|+..|.+
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~-----~-----~---~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~ 78 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPG-----W-----F---YSRIVATSVLGEVLHCK--GELTRSLALMQQ 78 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT-----C-----H---HHHHHHHHHHHHHHHHH--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-----c-----h---hHHHHHHHHHHHHHHhc--CcHHHHHHHHHH
Confidence 4556778888999999999999999999753211 0 0 11345788999999999 899999999999
Q ss_pred HHHhCCCCH------HHHHHHHHHHHHcCChHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 043158 113 AVEIDTKDS------VVWNQLGTLACSMGLLSISRWAFEQGLLCS--------PNNWNCMEKLLEVLIAIGDEVACLSVA 178 (1962)
Q Consensus 113 ALaLDP~Da------eaW~nLG~al~~LGr~eeAr~alErALeLd--------Pd~~~Al~nLg~aL~~LGdyeeAL~~~ 178 (1962)
|+++.|... .++.++|.++...|++++|+..|++++++. |....++.++|.++...|++++|..++
T Consensus 79 al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 158 (373)
T 1hz4_A 79 TEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASA 158 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 999876543 347899999999999999999999999976 344567889999999999999999999
Q ss_pred HHHHHhCCCC
Q 043158 179 ELILRHWPSH 188 (1962)
Q Consensus 179 ~rALeLdPd~ 188 (1962)
++++++.|..
T Consensus 159 ~~al~~~~~~ 168 (373)
T 1hz4_A 159 RSGIEVLSSY 168 (373)
T ss_dssp HHHHHHTTTS
T ss_pred HHHHHHhhcc
Confidence 9999987753
No 180
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.74 E-value=4.7e-08 Score=89.54 Aligned_cols=83 Identities=18% Similarity=0.188 Sum_probs=77.1
Q ss_pred CC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 043158 117 DT-KDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSRALHVK 195 (1962)
Q Consensus 117 DP-~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~Al~lk 195 (1962)
+| .++.+|+++|.++...|++++|+.+|+++++++|+++.++.++|.++..+|++++|+.+++++++++|+++.++..+
T Consensus 4 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l 83 (91)
T 1na3_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNL 83 (91)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 44 46899999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHhh
Q 043158 196 NTIE 199 (1962)
Q Consensus 196 ~~I~ 199 (1962)
+.+.
T Consensus 84 ~~~~ 87 (91)
T 1na3_A 84 GNAK 87 (91)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 181
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.72 E-value=5.4e-08 Score=92.17 Aligned_cols=79 Identities=15% Similarity=0.107 Sum_probs=74.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHH
Q 043158 120 DSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSH------SRALH 193 (1962)
Q Consensus 120 DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~------a~Al~ 193 (1962)
++++|+++|.++...|++++|+.+|+++++++|+++.++.++|.++..+|++++|+.+++++++++|++ +.++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999999999999999999998 76776
Q ss_pred HHHHh
Q 043158 194 VKNTI 198 (1962)
Q Consensus 194 lk~~I 198 (1962)
.++.+
T Consensus 83 ~~~~~ 87 (111)
T 2l6j_A 83 RLELA 87 (111)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 182
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.70 E-value=1.6e-07 Score=113.87 Aligned_cols=161 Identities=13% Similarity=0.045 Sum_probs=123.3
Q ss_pred ccHHHHHHHHHHHHH----CCCHHHHHHHHHHHhcCCcccchhc--c----CC-C---CCchh-------hhHH-hHHHH
Q 043158 31 SHLTQTYHEGLLKLQ----SKEYDKAQELLESVLKDPLIANAQA--A----DG-K---SSDGH-------LLQL-RFLAL 88 (1962)
Q Consensus 31 eeAlalYqkAL~L~q----qGRfeEA~eaY~raLa~p~lk~a~~--~----d~-~---~s~s~-------lLqL-~ylAy 88 (1962)
..+...+..|..+.. .+++++|...|+++++... ..+.. + .. . ..... +... ...++
T Consensus 253 ~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~-~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~ 331 (490)
T 2xm6_A 253 GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGN-SDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQ 331 (490)
T ss_dssp TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHH
Confidence 456778888888888 8999999999999886521 11100 0 00 0 00111 1111 35788
Q ss_pred HHHHHHHHHcCCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCHHHHHHH
Q 043158 89 KNLATVFLQQGSS---HYESALRCYLQAVEIDTKDSVVWNQLGTLACS----MGLLSISRWAFEQGLLCSPNNWNCMEKL 161 (1962)
Q Consensus 89 kNLG~lLl~~g~G---r~eEALe~y~rALaLDP~DaeaW~nLG~al~~----LGr~eeAr~alErALeLdPd~~~Al~nL 161 (1962)
.++|.++... | ++++|+.+|++|++. +++.+|++||.++.. .+++++|+.+|++|++. +++.++.+|
T Consensus 332 ~~lg~~y~~~--g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L 405 (490)
T 2xm6_A 332 ANLGAIYFRL--GSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQL 405 (490)
T ss_dssp HHHHHHHHHS--CCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred HHHHHHHHhC--CCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHH
Confidence 9999999886 5 789999999999987 689999999999999 89999999999999986 479999999
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHh
Q 043158 162 LEVLIA----IGDEVACLSVAELILRHWPS---HSRALHVKNTI 198 (1962)
Q Consensus 162 g~aL~~----LGdyeeAL~~~~rALeLdPd---~a~Al~lk~~I 198 (1962)
|.++.. .+++++|..+|++|++.+|+ ++.++..++.+
T Consensus 406 g~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~ 449 (490)
T 2xm6_A 406 GEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKL 449 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhc
Confidence 999998 89999999999999999954 77776665543
No 183
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.69 E-value=7.9e-08 Score=119.44 Aligned_cols=139 Identities=10% Similarity=0.016 Sum_probs=114.8
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC--cccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHH
Q 043158 32 HLTQTYHEGLLKLQSKEYDKAQELLESVLKDP--LIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRC 109 (1962)
Q Consensus 32 eAlalYqkAL~L~qqGRfeEA~eaY~raLa~p--~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~ 109 (1962)
.+....+.+..+..+|+|++|+.+|+++|+.. .+.+..+ . -..++.|||.+|..+ |++++|+..
T Consensus 308 ~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp-------~-----~a~~~~nLa~~y~~~--g~~~eA~~~ 373 (490)
T 3n71_A 308 FSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNL-------Y-----VLRLLSIASEVLSYL--QAYEEASHY 373 (490)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSH-------H-----HHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCH-------H-----HHHHHHHHHHHHHHh--cCHHHHHHH
Confidence 45567778888899999999999999999742 2221111 1 246899999999999 999999999
Q ss_pred HHHHHHh-----CCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHh-----cCCCCHHH---HHHHHHHHHHcCCHHH
Q 043158 110 YLQAVEI-----DTKDS---VVWNQLGTLACSMGLLSISRWAFEQGLL-----CSPNNWNC---MEKLLEVLIAIGDEVA 173 (1962)
Q Consensus 110 y~rALaL-----DP~Da---eaW~nLG~al~~LGr~eeAr~alErALe-----LdPd~~~A---l~nLg~aL~~LGdyee 173 (1962)
|++||++ .|++| ..++|||.++..+|++++|+..|++|++ +-|+||.. ..+|+.++..+|.|.+
T Consensus 374 ~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ 453 (490)
T 3n71_A 374 ARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQ 453 (490)
T ss_dssp HHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 9999976 46664 6789999999999999999999999998 45888666 5788899999999999
Q ss_pred HHHHHHHHHHh
Q 043158 174 CLSVAELILRH 184 (1962)
Q Consensus 174 AL~~~~rALeL 184 (1962)
|...|+++.+.
T Consensus 454 ae~~~~~~~~~ 464 (490)
T 3n71_A 454 NEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999888654
No 184
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.69 E-value=1.2e-07 Score=109.38 Aligned_cols=139 Identities=14% Similarity=0.117 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 043158 33 LTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQ 112 (1962)
Q Consensus 33 AlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~r 112 (1962)
+..++..|..+...|++++|...|+++++..+ .. . . ......++.++|.++... |++++|+++|++
T Consensus 53 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~----~~-~-----~--~~~~~~~~~~la~~~~~~--G~~~~A~~~~~~ 118 (373)
T 1hz4_A 53 IVATSVLGEVLHCKGELTRSLALMQQTEQMAR----QH-D-----V--WHYALWSLIQQSEILFAQ--GFLQTAWETQEK 118 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH----HT-T-----C--HHHHHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH----hc-C-----c--HHHHHHHHHHHHHHHHHC--CCHHHHHHHHHH
Confidence 34667788889999999999999999997521 00 0 0 011246788999999999 999999999999
Q ss_pred HHHhC--------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHH
Q 043158 113 AVEID--------TKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNN-----WNCMEKLLEVLIAIGDEVACLSVAE 179 (1962)
Q Consensus 113 ALaLD--------P~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~-----~~Al~nLg~aL~~LGdyeeAL~~~~ 179 (1962)
|+++. |....++.++|.++...|++++|+.+|++++.+.|.. ..++.++|.++...|++++|..+++
T Consensus 119 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~ 198 (373)
T 1hz4_A 119 AFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLN 198 (373)
T ss_dssp HHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99986 4456788999999999999999999999999998753 4678999999999999999999999
Q ss_pred HHHHhC
Q 043158 180 LILRHW 185 (1962)
Q Consensus 180 rALeLd 185 (1962)
+++++.
T Consensus 199 ~a~~~~ 204 (373)
T 1hz4_A 199 RLENLL 204 (373)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999873
No 185
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.65 E-value=7.5e-08 Score=92.81 Aligned_cols=83 Identities=17% Similarity=0.160 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--HHHHHHHH
Q 043158 85 FLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNN--WNCMEKLL 162 (1962)
Q Consensus 85 ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~--~~Al~nLg 162 (1962)
..+|.++|.++... |++++|+.+|++|++++|+++.+|+++|.++..+|++++|+.+|+++++++|.. ..+...+.
T Consensus 7 ~~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~ 84 (100)
T 3ma5_A 7 PFTRYALAQEHLKH--DNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQ 84 (100)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHH
Confidence 47899999999999 999999999999999999999999999999999999999999999999998753 44445555
Q ss_pred HHHHHcC
Q 043158 163 EVLIAIG 169 (1962)
Q Consensus 163 ~aL~~LG 169 (1962)
.++...+
T Consensus 85 ~~l~~~~ 91 (100)
T 3ma5_A 85 DAKLKAE 91 (100)
T ss_dssp HHHHHHH
T ss_pred HHHHHcc
Confidence 5554433
No 186
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.61 E-value=1.3e-06 Score=105.84 Aligned_cols=143 Identities=11% Similarity=0.005 Sum_probs=123.9
Q ss_pred cccHHHHHHHHHHHHH----CCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHH----cCCC
Q 043158 30 ESHLTQTYHEGLLKLQ----SKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQ----QGSS 101 (1962)
Q Consensus 30 eeeAlalYqkAL~L~q----qGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~----~g~G 101 (1962)
..++.+.+..|..+.. .+++++|...|+++++.. ...++++||.++.. . +
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--------------------~~~a~~~Lg~~y~~g~g~~--~ 93 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG--------------------YTPAEYVLGLRYMNGEGVP--Q 93 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHTSSSC--C
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC--------------------CHHHHHHHHHHHHcCCCCC--C
Confidence 5578889999999998 899999999999998642 13678899999988 6 7
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHH
Q 043158 102 HYESALRCYLQAVEIDTKDSVVWNQLGTLACS----MGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIA----IGDEVA 173 (1962)
Q Consensus 102 r~eEALe~y~rALaLDP~DaeaW~nLG~al~~----LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~----LGdyee 173 (1962)
++++|+.+|++|++. +++.++++||.++.. .+++++|+..|++|++. +++.++.+||.++.. .+++++
T Consensus 94 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~ 169 (490)
T 2xm6_A 94 DYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVM 169 (490)
T ss_dssp CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred CHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHH
Confidence 899999999999875 589999999999998 88999999999999775 689999999999987 889999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHhhh
Q 043158 174 CLSVAELILRHWPSHSRALHVKNTIEE 200 (1962)
Q Consensus 174 AL~~~~rALeLdPd~a~Al~lk~~I~~ 200 (1962)
|+.+|+++++. +++.+++.++.+..
T Consensus 170 A~~~~~~a~~~--~~~~a~~~Lg~~y~ 194 (490)
T 2xm6_A 170 AREWYSKAAEQ--GNVWSCNQLGYMYS 194 (490)
T ss_dssp HHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHh
Confidence 99999999886 57888888887754
No 187
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.52 E-value=1.9e-07 Score=91.84 Aligned_cols=100 Identities=14% Similarity=0.077 Sum_probs=90.3
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---
Q 043158 84 RFLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDS------VVWNQLGTLACSMGLLSISRWAFEQGLLCSPNN--- 154 (1962)
Q Consensus 84 ~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~Da------eaW~nLG~al~~LGr~eeAr~alErALeLdPd~--- 154 (1962)
...++.++|.++... |++++|+.+|.+|+++.+... .++.++|.++..+|++++|+..|++++++.+..
T Consensus 8 ~~~~~~~l~~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 85 (164)
T 3ro3_A 8 QGRAFGNLGNTHYLL--GNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR 85 (164)
T ss_dssp HHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Confidence 357899999999999 899999999999999976543 589999999999999999999999999987654
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 043158 155 ---WNCMEKLLEVLIAIGDEVACLSVAELILRHW 185 (1962)
Q Consensus 155 ---~~Al~nLg~aL~~LGdyeeAL~~~~rALeLd 185 (1962)
..++.++|.++..+|++++|+.++++++++.
T Consensus 86 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 119 (164)
T 3ro3_A 86 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 119 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 6678999999999999999999999999874
No 188
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.49 E-value=7.3e-07 Score=103.85 Aligned_cols=113 Identities=15% Similarity=0.023 Sum_probs=97.2
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHH
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRC 109 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~ 109 (1962)
+... ..|..|+.+++.|||++|+..|+++...+. + . +...+++++|.++..+ |++++|+.+
T Consensus 133 p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d-----~---------~--~~~~a~~~LG~al~~L--G~~~eAl~~ 193 (282)
T 4f3v_A 133 SEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPD-----K---------F--LAGAAGVAHGVAAANL--ALFTEAERR 193 (282)
T ss_dssp CHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSC-----H---------H--HHHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred CchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCC-----c---------c--cHHHHHHHHHHHHHHC--CCHHHHHHH
Confidence 6666 899999999999999999999997766431 0 0 1235899999999999 999999999
Q ss_pred HHHHHHhC--CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q 043158 110 YLQAVEID--TK-DSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLL 162 (1962)
Q Consensus 110 y~rALaLD--P~-DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg 162 (1962)
|++|+.-. |. .+++++++|.++.++|+.++|+.+|++++..+|+ ..++..|.
T Consensus 194 l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 194 LTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 99999655 66 6789999999999999999999999999999999 88776663
No 189
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.49 E-value=1.2e-06 Score=106.46 Aligned_cols=108 Identities=13% Similarity=0.057 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CChHHHHHHHHHHHhcCCCCHHHH
Q 043158 86 LALKNLATVFLQQGSS---HYESALRCYLQAVEIDTKDSVVWNQLGTLACSM----GLLSISRWAFEQGLLCSPNNWNCM 158 (1962)
Q Consensus 86 lAykNLG~lLl~~g~G---r~eEALe~y~rALaLDP~DaeaW~nLG~al~~L----Gr~eeAr~alErALeLdPd~~~Al 158 (1962)
.++++||.++... | ++++|+..|++|++.+|.++.++++||.++... +++++|+..|+++. |+++.++
T Consensus 177 ~a~~~Lg~~~~~~--g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~ 251 (452)
T 3e4b_A 177 ICYVELATVYQKK--QQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASW 251 (452)
T ss_dssp THHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHH
T ss_pred HHHHHHHHHHHHc--CCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHH
Confidence 4788999999987 8 899999999999999999999999999999766 78999999999988 8999999
Q ss_pred HHHHHH-H--HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhh
Q 043158 159 EKLLEV-L--IAIGDEVACLSVAELILRHWPSHSRALHVKNTIEE 200 (1962)
Q Consensus 159 ~nLg~a-L--~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I~~ 200 (1962)
.+||.+ + ...|++++|+.+|++|++. +++.+++.++.+..
T Consensus 252 ~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~ 294 (452)
T 3e4b_A 252 VSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY 294 (452)
T ss_dssp HHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence 999988 4 5679999999999998865 58888888888755
No 190
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.48 E-value=8.5e-07 Score=107.81 Aligned_cols=157 Identities=11% Similarity=-0.023 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCcccchh----cc---CCC----C-------CchhhhHHhHHHHHHHH
Q 043158 34 TQTYHEGLLKLQSK---EYDKAQELLESVLKDPLIANAQ----AA---DGK----S-------SDGHLLQLRFLALKNLA 92 (1962)
Q Consensus 34 lalYqkAL~L~qqG---RfeEA~eaY~raLa~p~lk~a~----~~---d~~----~-------s~s~lLqL~ylAykNLG 92 (1962)
.+.+..|..+...| ++++|+..|+++.+..+.. +. .+ ... . ....+..-+..+++++|
T Consensus 177 ~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~-a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg 255 (452)
T 3e4b_A 177 ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVT-AQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLA 255 (452)
T ss_dssp THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSC-HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHH
Confidence 36788888888888 9999999999988753211 00 00 000 0 00001101234555555
Q ss_pred HHHHH-cCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 043158 93 TVFLQ-QGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMG-----LLSISRWAFEQGLLCSPNNWNCMEKLLEVLI 166 (1962)
Q Consensus 93 ~lLl~-~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LG-----r~eeAr~alErALeLdPd~~~Al~nLg~aL~ 166 (1962)
.+++. .+.+++++|+..|++|++. +++.++++||.++. .| ++++|+.+|++|+ |+++.++.+||.++.
T Consensus 256 ~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~ 329 (452)
T 3e4b_A 256 QLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYR 329 (452)
T ss_dssp HHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHH
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHH
Confidence 55220 0114555555555555533 25555555555554 33 5555555555555 555555555554444
Q ss_pred H----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhh
Q 043158 167 A----IGDEVACLSVAELILRHWPSHSRALHVKNTIE 199 (1962)
Q Consensus 167 ~----LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I~ 199 (1962)
. ..++++|+.+|++|.+ ++++.|.+.++.+.
T Consensus 330 ~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y 364 (452)
T 3e4b_A 330 RGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLF 364 (452)
T ss_dssp TTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHH
Confidence 3 1255555555555544 23444455555443
No 191
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.44 E-value=1.1e-06 Score=102.75 Aligned_cols=149 Identities=13% Similarity=0.105 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 043158 33 LTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQ 112 (1962)
Q Consensus 33 AlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~r 112 (1962)
+...+++|-.+.+.|+|++|++.|.++++..+...... ...............++.++|.+|... |++++|++.|.+
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~al~~l~~~y~~~--~~~~~a~~~~~~ 80 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAA-AGASVDDKRRNEQETSILELGQLYVTM--GAKDKLREFIPH 80 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBS-SSSSBCSHHHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhH-HHHHHHHHHhhhHHHHHHHHHHHHHHC--CCHHHHHHHHHH
Confidence 34567788889999999999999999998643111000 000111112223456788889888888 788888888888
Q ss_pred HHHhCCCCH------HHHHHHHHHHHHcCChHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043158 113 AVEIDTKDS------VVWNQLGTLACSMGLLSISRWAFEQGLLCSP------NNWNCMEKLLEVLIAIGDEVACLSVAEL 180 (1962)
Q Consensus 113 ALaLDP~Da------eaW~nLG~al~~LGr~eeAr~alErALeLdP------d~~~Al~nLg~aL~~LGdyeeAL~~~~r 180 (1962)
++...+... .+..++|.++...|+++.|+..+++++...+ ..+.++.+||.++...|+|.+|+..+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~ 160 (434)
T 4b4t_Q 81 STEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALIND 160 (434)
T ss_dssp THHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 887755432 3456677777777777777777777776432 2355677777777777777777777776
Q ss_pred HHHh
Q 043158 181 ILRH 184 (1962)
Q Consensus 181 ALeL 184 (1962)
++..
T Consensus 161 ~~~~ 164 (434)
T 4b4t_Q 161 LLRE 164 (434)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 192
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.44 E-value=1.3e-06 Score=89.81 Aligned_cols=119 Identities=15% Similarity=0.035 Sum_probs=102.8
Q ss_pred CCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 043158 47 KEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQ 126 (1962)
Q Consensus 47 GRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~n 126 (1962)
+++++|...|+++.+... ..+. +|.++... +..++|+..|++|.+. +++.++++
T Consensus 9 ~d~~~A~~~~~~aa~~g~--------------------~~a~--lg~~y~~g--~~~~~A~~~~~~Aa~~--g~~~a~~~ 62 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE--------------------MFGC--LSLVSNSQ--INKQKLFQYLSKACEL--NSGNGCRF 62 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC--------------------TTHH--HHHHTCTT--SCHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCC--------------------Hhhh--HHHHHHcC--CCHHHHHHHHHHHHcC--CCHHHHHH
Confidence 468899999999987521 1233 89888876 7899999999999998 78999999
Q ss_pred HHHHHHH----cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 043158 127 LGTLACS----MGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIA----IGDEVACLSVAELILRHWPSHSRALHVK 195 (1962)
Q Consensus 127 LG~al~~----LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~----LGdyeeAL~~~~rALeLdPd~a~Al~lk 195 (1962)
||.++.. .+++++|+..|++|.+. .++.+..+||.++.. .++++.|+.+|++|.+. +++.|...+
T Consensus 63 Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l 135 (138)
T 1klx_A 63 LGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL--GSEDACGIL 135 (138)
T ss_dssp HHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHC
T ss_pred HHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHH
Confidence 9999999 89999999999999987 789999999999999 89999999999999998 455555443
No 193
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.38 E-value=1.3e-06 Score=93.38 Aligned_cols=99 Identities=8% Similarity=-0.037 Sum_probs=92.4
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcC-C-CCHHHHHHHHHHHHHcCCHHHHHH
Q 043158 102 HYESALRCYLQAVEIDTKDSVVWNQLGTLACSMG---LLSISRWAFEQGLLCS-P-NNWNCMEKLLEVLIAIGDEVACLS 176 (1962)
Q Consensus 102 r~eEALe~y~rALaLDP~DaeaW~nLG~al~~LG---r~eeAr~alErALeLd-P-d~~~Al~nLg~aL~~LGdyeeAL~ 176 (1962)
....+.+.|.++++.+|.+.++.+++|.++.+.+ +.++++..|+..++.+ | ++.+++++||..++.+|+|+.|..
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3677888999999999999999999999999999 6779999999999999 8 789999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHhhh
Q 043158 177 VAELILRHWPSHSRALHVKNTIEE 200 (1962)
Q Consensus 177 ~~~rALeLdPd~a~Al~lk~~I~~ 200 (1962)
+++++|+.+|++..|..++..|..
T Consensus 93 y~~~lL~ieP~n~QA~~Lk~~ie~ 116 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQAKELERLIDK 116 (152)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHH
Confidence 999999999999999999988744
No 194
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.37 E-value=1.5e-06 Score=85.00 Aligned_cols=82 Identities=11% Similarity=0.010 Sum_probs=71.0
Q ss_pred CCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 043158 117 DTKDSVVWNQLGTLACSMGL---LSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSRALH 193 (1962)
Q Consensus 117 DP~DaeaW~nLG~al~~LGr---~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~Al~ 193 (1962)
+|+++++|..+|.++...++ .++|+..|++||++||+++.++..+|.+++..|+|.+|+.+++++++.+|..+..-.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~~~ 81 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDRVT 81 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHH
Confidence 68999999999999987766 799999999999999999999999999999999999999999999999998654444
Q ss_pred HHHHh
Q 043158 194 VKNTI 198 (1962)
Q Consensus 194 lk~~I 198 (1962)
+...|
T Consensus 82 i~~~I 86 (93)
T 3bee_A 82 IIESI 86 (93)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 195
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.31 E-value=1.9e-06 Score=81.04 Aligned_cols=70 Identities=13% Similarity=-0.014 Sum_probs=66.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 043158 124 WNQLGTLACSMGLLSISRWAFEQGLLCSPNNWN-CMEKLLEVLIAIGDEVACLSVAELILRHWPSHSRALH 193 (1962)
Q Consensus 124 W~nLG~al~~LGr~eeAr~alErALeLdPd~~~-Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~Al~ 193 (1962)
.++.|.++...|++++|+.+|+++++.+|+++. ++.++|.++..+|++++|+.+|+++++++|+++.++.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 73 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQA 73 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 467899999999999999999999999999999 9999999999999999999999999999999998773
No 196
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.29 E-value=1.1e-05 Score=97.00 Aligned_cols=142 Identities=14% Similarity=0.065 Sum_probs=105.6
Q ss_pred cHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcC--CC-C---
Q 043158 32 HLTQTYHEGLLKLQSK---EYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQG--SS-H--- 102 (1962)
Q Consensus 32 eAlalYqkAL~L~qqG---RfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g--~G-r--- 102 (1962)
+|..+|-+|..++..+ .+.+|.++|+++++.+| +. ..+..-.+.+|. .+...+ .+ .
T Consensus 195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP-------~~----a~A~A~la~a~~----~~~~~~~~~~~~~~~ 259 (372)
T 3ly7_A 195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSP-------EF----TYARAEKALVDI----VRHSQHPLDEKQLAA 259 (372)
T ss_dssp GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCT-------TC----HHHHHHHHHHHH----HHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC-------CC----HHHHHHHHHHHH----HHhccCCCchhhHHH
Confidence 6888999999988764 46899999999998754 21 111111122222 111110 00 0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043158 103 YESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELIL 182 (1962)
Q Consensus 103 ~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rAL 182 (1962)
...|+.. ..++..+|.++.++..+|.++...|++++|+..+++|++++|+ +.++..+|.++...|++++|++.|.+|+
T Consensus 260 l~~a~~a-~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~Al 337 (372)
T 3ly7_A 260 LNTEIDN-IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAF 337 (372)
T ss_dssp HHHHHHH-HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHH-HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1222221 1345788999999999999999999999999999999999975 8899999999999999999999999999
Q ss_pred HhCCCCHH
Q 043158 183 RHWPSHSR 190 (1962)
Q Consensus 183 eLdPd~a~ 190 (1962)
.++|..+.
T Consensus 338 rL~P~~~t 345 (372)
T 3ly7_A 338 NLRPGANT 345 (372)
T ss_dssp HHSCSHHH
T ss_pred hcCCCcCh
Confidence 99999864
No 197
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.22 E-value=1e-05 Score=109.41 Aligned_cols=157 Identities=10% Similarity=0.031 Sum_probs=113.8
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhcc---CCCCC-------------------chhhhHH----
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAA---DGKSS-------------------DGHLLQL---- 83 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~---d~~~s-------------------~s~lLqL---- 83 (1962)
......+++.|-.+.+.|++++|+++|.++ +. +......+ ...+. .++.+..
T Consensus 1102 vn~p~vWsqLAKAql~~G~~kEAIdsYiKA-dD-~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAK 1179 (1630)
T 1xi4_A 1102 CNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-DD-PSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAK 1179 (1630)
T ss_pred cCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-CC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHh
Confidence 456677888888888889999999888776 21 10100000 00000 0111111
Q ss_pred --------------hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 043158 84 --------------RFLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLL 149 (1962)
Q Consensus 84 --------------~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALe 149 (1962)
+...|.++|..+... |++++|+.+|.+| ..|..+|.++.++|++++|+.++++|..
T Consensus 1180 l~rleele~fI~~~n~ad~~~iGd~le~e--g~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n 1249 (1630)
T 1xi4_A 1180 TNRLAELEEFINGPNNAHIQQVGDRCYDE--KMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANS 1249 (1630)
T ss_pred hcCHHHHHHHHhCCCHHHHHHHHHHHHhc--CCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCC
Confidence 123577889999888 8999999999986 5899999999999999999999999865
Q ss_pred cCC-------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 043158 150 CSP-------------------------NNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSRALHVKNTI 198 (1962)
Q Consensus 150 LdP-------------------------d~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I 198 (1962)
.++ .+++.+..++..|...|.+++|+..++++|.++|.|...+..++.+
T Consensus 1250 ~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiL 1323 (1630)
T 1xi4_A 1250 TRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAIL 1323 (1630)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHH
Confidence 544 3566677888889999999999999999999998887766556555
No 198
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.08 E-value=3.2e-05 Score=90.46 Aligned_cols=87 Identities=15% Similarity=0.149 Sum_probs=81.1
Q ss_pred CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHc-----CChHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHH-cCCHH
Q 043158 102 HYESALRCYLQAVEIDTK--DSVVWNQLGTLACSM-----GLLSISRWAFEQGLLCSPNN-WNCMEKLLEVLIA-IGDEV 172 (1962)
Q Consensus 102 r~eEALe~y~rALaLDP~--DaeaW~nLG~al~~L-----Gr~eeAr~alErALeLdPd~-~~Al~nLg~aL~~-LGdye 172 (1962)
...+|...+++|+++||+ +..+|.-||.++... |+.+.|+.+|++||+++|+. ..++.-.|..|.. .||++
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 378999999999999999 788999999999995 99999999999999999986 9999999999988 59999
Q ss_pred HHHHHHHHHHHhCCCC
Q 043158 173 ACLSVAELILRHWPSH 188 (1962)
Q Consensus 173 eAL~~~~rALeLdPd~ 188 (1962)
+|..++++|++.+|..
T Consensus 258 ~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 258 GFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHHHcCCCCC
Confidence 9999999999998773
No 199
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.05 E-value=1.8e-05 Score=77.61 Aligned_cols=76 Identities=16% Similarity=0.024 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHH
Q 043158 85 FLALKNLATVFLQQGSSHYESALRCYLQAVEID-------TKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNC 157 (1962)
Q Consensus 85 ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLD-------P~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~A 157 (1962)
..-++.+|..++.. |++..|+..|++|+.+. +..++++.+||.++.++|+++.|+..+++|++++|+++.+
T Consensus 5 a~dc~~lG~~~~~~--~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 5 AEDCFELGKVAYTE--ADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHc--cchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 45677889999998 88999999999998873 3467888888988889998899988888888888888888
Q ss_pred HHHHH
Q 043158 158 MEKLL 162 (1962)
Q Consensus 158 l~nLg 162 (1962)
+.|++
T Consensus 83 ~~n~~ 87 (104)
T 2v5f_A 83 NGNLK 87 (104)
T ss_dssp HHHHH
T ss_pred HhhHH
Confidence 88877
No 200
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.04 E-value=3.9e-05 Score=90.56 Aligned_cols=158 Identities=10% Similarity=-0.033 Sum_probs=114.2
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCc---ccchhc--------cCCCC----CchhhhHHh-------HHHHH
Q 043158 32 HLTQTYHEGLLKLQSKEYDKAQELLESVLKDPL---IANAQA--------ADGKS----SDGHLLQLR-------FLALK 89 (1962)
Q Consensus 32 eAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~---lk~a~~--------~d~~~----s~s~lLqL~-------ylAyk 89 (1962)
....++-.|..+...|++++|++.|.+.+...+ ...+.. .+... ....+.+.. -....
T Consensus 99 ~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~ 178 (310)
T 3mv2_B 99 SPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMIL 178 (310)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHH
Confidence 345567888888889999999999999976432 111100 00000 001111111 24455
Q ss_pred HHHHH--HHHcCCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc----------CCCCH
Q 043158 90 NLATV--FLQQGSSHYESALRCYLQAVEIDTK--DSVVWNQLGTLACSMGLLSISRWAFEQGLLC----------SPNNW 155 (1962)
Q Consensus 90 NLG~l--Ll~~g~Gr~eEALe~y~rALaLDP~--DaeaW~nLG~al~~LGr~eeAr~alErALeL----------dPd~~ 155 (1962)
+++.+ .+..|.+++.+|...|.++.+..|+ .+.++++ +++.+|++++|...+++.++. +|+++
T Consensus 179 ~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~ 255 (310)
T 3mv2_B 179 NLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKP 255 (310)
T ss_dssp HHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHH
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCH
Confidence 66555 3334325899999999999888887 4556666 899999999999999988887 69999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 043158 156 NCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSRALHV 194 (1962)
Q Consensus 156 ~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~Al~l 194 (1962)
.++.|++.+.+.+|+ +|.+++.++.+.+|+|+...-+
T Consensus 256 ~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~ 292 (310)
T 3mv2_B 256 TFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHH 292 (310)
T ss_dssp HHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHH
Confidence 999999999999998 8899999999999999855433
No 201
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.02 E-value=3.6e-05 Score=94.19 Aligned_cols=121 Identities=9% Similarity=0.031 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC--cccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 043158 33 LTQTYHEGLLKLQSKEYDKAQELLESVLKDP--LIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCY 110 (1962)
Q Consensus 33 AlalYqkAL~L~qqGRfeEA~eaY~raLa~p--~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y 110 (1962)
+..++...-.+.++|+|++|++.|+++|+.. .+.+..+ . -..++.|+|.+|..+ |++++|+..|
T Consensus 287 ~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~-------~-----~~~~~~~L~~~y~~~--g~~~eA~~~~ 352 (429)
T 3qwp_A 287 VQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINI-------Y-----QLKVLDCAMDACINL--GLLEEALFYG 352 (429)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSH-------H-----HHHHHHHHHHHHHHH--TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccch-------H-----HHHHHHHHHHHHHhh--ccHHHHHHHH
Confidence 4455666677888999999999999999853 1111111 1 246899999999999 8999999999
Q ss_pred HHHHHh-----CCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCCCHHHH---HHHHHHHHH
Q 043158 111 LQAVEI-----DTKDS---VVWNQLGTLACSMGLLSISRWAFEQGLLC-----SPNNWNCM---EKLLEVLIA 167 (1962)
Q Consensus 111 ~rALaL-----DP~Da---eaW~nLG~al~~LGr~eeAr~alErALeL-----dPd~~~Al---~nLg~aL~~ 167 (1962)
++||++ .|++| ..+++||.++..+|++++|+..|++|+++ -|+||... .+|+.+...
T Consensus 353 ~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 353 TRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDAN 425 (429)
T ss_dssp HHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 999976 46665 56899999999999999999999999984 58887654 556555544
No 202
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.02 E-value=3e-05 Score=95.18 Aligned_cols=109 Identities=13% Similarity=0.101 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcC--CcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 043158 35 QTYHEGLLKLQSKEYDKAQELLESVLKD--PLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQ 112 (1962)
Q Consensus 35 alYqkAL~L~qqGRfeEA~eaY~raLa~--p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~r 112 (1962)
..+...-.....|+|++|+.+|+++|+. ..+.+..+ . -..++.|+|.+|..+ |++++|+.+|++
T Consensus 300 ~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp-------~-----~a~~~~nLa~~y~~~--g~~~eA~~~~~~ 365 (433)
T 3qww_A 300 NVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNV-------Y-----MLHMMYQAMGVCLYM--QDWEGALKYGQK 365 (433)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSH-------H-----HHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred HHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhch-------H-----HHHHHHHHHHHHHhh--cCHHHHHHHHHH
Confidence 3444444444569999999999999974 22221111 1 236899999999999 899999999999
Q ss_pred HHHh-----CCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCCCHHH
Q 043158 113 AVEI-----DTKDS---VVWNQLGTLACSMGLLSISRWAFEQGLLC-----SPNNWNC 157 (1962)
Q Consensus 113 ALaL-----DP~Da---eaW~nLG~al~~LGr~eeAr~alErALeL-----dPd~~~A 157 (1962)
||++ .|++| ..++|||.++..+|++++|+..|++|+++ -|+||..
T Consensus 366 aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 366 IIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 9975 44444 45778888888888888888888888774 3566544
No 203
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.01 E-value=2.2e-05 Score=96.28 Aligned_cols=96 Identities=10% Similarity=-0.060 Sum_probs=81.9
Q ss_pred CCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCCCHHH---HHHHHHH
Q 043158 101 SHYESALRCYLQAVEI-----DTKDS---VVWNQLGTLACSMGLLSISRWAFEQGLLC-----SPNNWNC---MEKLLEV 164 (1962)
Q Consensus 101 Gr~eEALe~y~rALaL-----DP~Da---eaW~nLG~al~~LGr~eeAr~alErALeL-----dPd~~~A---l~nLg~a 164 (1962)
|++++|+..|++||++ .|+++ ..+.+||.++..+|+|++|+..|+++|++ -|+||.. +.|||.+
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 7899999999999984 56665 66889999999999999999999999985 4777665 7999999
Q ss_pred HHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHH
Q 043158 165 LIAIGDEVACLSVAELILRH-----WPSHSRALHVKN 196 (1962)
Q Consensus 165 L~~LGdyeeAL~~~~rALeL-----dPd~a~Al~lk~ 196 (1962)
+..+|+|++|+..|++|+++ .|+|+....+..
T Consensus 392 ~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~ 428 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQ 428 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 99999999999999999986 566665444433
No 204
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.99 E-value=4.1e-05 Score=95.35 Aligned_cols=102 Identities=8% Similarity=-0.072 Sum_probs=84.6
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCCCH
Q 043158 89 KNLATVFLQQGSSHYESALRCYLQAVEI-----DTKD---SVVWNQLGTLACSMGLLSISRWAFEQGLLC-----SPNNW 155 (1962)
Q Consensus 89 kNLG~lLl~~g~Gr~eEALe~y~rALaL-----DP~D---aeaW~nLG~al~~LGr~eeAr~alErALeL-----dPd~~ 155 (1962)
.+.+..+..+ |++++|+..|++||++ .|++ +..+.+||.++..+|+|++|+..|+++|++ -|+||
T Consensus 313 le~a~~~~~q--g~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp 390 (490)
T 3n71_A 313 LEKIDKARSE--GLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA 390 (490)
T ss_dssp HHHHHHHHTT--TCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHhC--CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 3444555566 8999999999999986 4555 467999999999999999999999999985 57776
Q ss_pred HH---HHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHH
Q 043158 156 NC---MEKLLEVLIAIGDEVACLSVAELILRH-----WPSHSRAL 192 (1962)
Q Consensus 156 ~A---l~nLg~aL~~LGdyeeAL~~~~rALeL-----dPd~a~Al 192 (1962)
.. +.|||.++..+|+|++|+..|++|+++ .|+|+...
T Consensus 391 ~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 435 (490)
T 3n71_A 391 QLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITK 435 (490)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHH
Confidence 64 799999999999999999999999986 45555433
No 205
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.97 E-value=2e-05 Score=96.88 Aligned_cols=148 Identities=11% Similarity=0.111 Sum_probs=100.8
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhc--cCC---CCCchhhhHH--hHHHHHHHHHHHHHcCCCCHHHHHH
Q 043158 36 TYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQA--ADG---KSSDGHLLQL--RFLALKNLATVFLQQGSSHYESALR 108 (1962)
Q Consensus 36 lYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~--~d~---~~s~s~lLqL--~ylAykNLG~lLl~~g~Gr~eEALe 108 (1962)
....+..+.+.|+++++.+.|+. |. ..+.. ++. .+....+... ....|..+|.++..+ |++++|++
T Consensus 97 ~~~Li~~Y~Klg~l~e~e~f~~~----pn-~~a~~~IGd~~~~~g~yeeA~~~Y~~a~n~~~LA~~L~~L--g~yq~AVe 169 (449)
T 1b89_A 97 ETELIFALAKTNRLAELEEFING----PN-NAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHL--GEYQAAVD 169 (449)
T ss_dssp ------------CHHHHTTTTTC----C-----------------CTTTHHHHHHHTTCHHHHHHHHHTT--TCHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHcC----Cc-HHHHHHHHHHHHHcCCHHHHHHHHHHhhhHHHHHHHHHHh--ccHHHHHH
Confidence 44455566677888887766642 21 00000 000 0111222211 235688999999999 89999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 043158 109 CYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSH 188 (1962)
Q Consensus 109 ~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~ 188 (1962)
+|++| .++.+|..++.++...|+++.|..|... |..+|+ -+..+...+...|++++|+..+++++.+++.|
T Consensus 170 a~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad---~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah 240 (449)
T 1b89_A 170 GARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHAD---ELEELINYYQDRGYFEELITMLEAALGLERAH 240 (449)
T ss_dssp HHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCC
T ss_pred HHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHh---hHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHH
Confidence 99999 5899999999999999999999888885 445444 45578899999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 043158 189 SRALHVKNTIE 199 (1962)
Q Consensus 189 a~Al~lk~~I~ 199 (1962)
..++..++...
T Consensus 241 ~~~ftel~il~ 251 (449)
T 1b89_A 241 MGMFTELAILY 251 (449)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88887776654
No 206
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.97 E-value=3.9e-05 Score=75.23 Aligned_cols=80 Identities=20% Similarity=0.123 Sum_probs=71.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 043158 120 DSVVWNQLGTLACSMGLLSISRWAFEQGLLCS-------PNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSRAL 192 (1962)
Q Consensus 120 DaeaW~nLG~al~~LGr~eeAr~alErALeLd-------Pd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~Al 192 (1962)
.+.-.+.+|..+...|+|..|+..|+.|+.+. +..+.++.+||.++..+|+++.|+.++++|++++|+++.++
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 45678899999999999999999999999974 35688899999999999999999999999999999999998
Q ss_pred HHHHHhh
Q 043158 193 HVKNTIE 199 (1962)
Q Consensus 193 ~lk~~I~ 199 (1962)
..+..+.
T Consensus 84 ~n~~~~~ 90 (104)
T 2v5f_A 84 GNLKYFE 90 (104)
T ss_dssp HHHHHHH
T ss_pred hhHHHHH
Confidence 8776543
No 207
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.97 E-value=5.7e-05 Score=88.45 Aligned_cols=150 Identities=13% Similarity=0.001 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC-cccchhc--------c---CCCCCchhh-------hH---------Hh
Q 043158 33 LTQTYHEGLLKLQSKEYDKAQELLESVLKDP-LIANAQA--------A---DGKSSDGHL-------LQ---------LR 84 (1962)
Q Consensus 33 AlalYqkAL~L~qqGRfeEA~eaY~raLa~p-~lk~a~~--------~---d~~~s~s~l-------Lq---------L~ 84 (1962)
..++.+.|..+...|++++|.+.|.+++... .+..+.. + ...+....+ +. +.
T Consensus 55 ~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 134 (434)
T 4b4t_Q 55 ETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLK 134 (434)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHH
Confidence 3557888889999999999999999998632 1111100 0 000111111 11 12
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---C-
Q 043158 85 FLALKNLATVFLQQGSSHYESALRCYLQAVEI------DTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPN---N- 154 (1962)
Q Consensus 85 ylAykNLG~lLl~~g~Gr~eEALe~y~rALaL------DP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd---~- 154 (1962)
..++.++|.++.+. |++.+|+..+.+++.. .|..++++.++|+++..+|++..|+.+|++++.+.+. .
T Consensus 135 ~~~~~~la~~~~~~--g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 212 (434)
T 4b4t_Q 135 HSLSIKLATLHYQK--KQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPT 212 (434)
T ss_dssp HHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHc--cChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCch
Confidence 45777888888888 7888888888888776 3445778888888888888888888888888876532 2
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 043158 155 ---WNCMEKLLEVLIAIGDEVACLSVAELILRH 184 (1962)
Q Consensus 155 ---~~Al~nLg~aL~~LGdyeeAL~~~~rALeL 184 (1962)
...+..+|.++...|+|.+|..+|..+++.
T Consensus 213 ~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 213 QTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp HHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 234566777777888888888888877764
No 208
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.90 E-value=0.00013 Score=86.03 Aligned_cols=81 Identities=19% Similarity=0.079 Sum_probs=42.6
Q ss_pred HHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHH
Q 043158 52 AQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQAVEIDT--KDSVVWNQLGT 129 (1962)
Q Consensus 52 A~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP--~DaeaW~nLG~ 129 (1962)
|+..++++++.+... ..++..+|.++... |++++|+..+.+.+..+| ++.+++..++.
T Consensus 85 a~~~l~~l~~~~~~~------------------~~~~~~la~i~~~~--g~~eeAL~~l~~~i~~~~~~~~lea~~l~vq 144 (310)
T 3mv2_B 85 NIEELENLLKDKQNS------------------PYELYLLATAQAIL--GDLDKSLETCVEGIDNDEAEGTTELLLLAIE 144 (310)
T ss_dssp CCHHHHHTTTTSCCC------------------HHHHHHHHHHHHHH--TCHHHHHHHHHHHHTSSCSTTHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCC------------------cHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCCcCcHHHHHHHHH
Confidence 888999998753100 12233445555544 455555555555555544 44555555555
Q ss_pred HHHHcCChHHHHHHHHHHHhcCC
Q 043158 130 LACSMGLLSISRWAFEQGLLCSP 152 (1962)
Q Consensus 130 al~~LGr~eeAr~alErALeLdP 152 (1962)
++..+|+.++|+..+++..+.+|
T Consensus 145 i~L~~~r~d~A~k~l~~~~~~~~ 167 (310)
T 3mv2_B 145 VALLNNNVSTASTIFDNYTNAIE 167 (310)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHCCCHHHHHHHHHHHHhcCc
Confidence 55555555555555555555544
No 209
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.89 E-value=5.7e-05 Score=102.47 Aligned_cols=111 Identities=7% Similarity=0.151 Sum_probs=88.0
Q ss_pred HHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC
Q 043158 40 GLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQAVEIDTK 119 (1962)
Q Consensus 40 AL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~ 119 (1962)
|..+.+.|.++||.++|+++-.. ..+.+.++... +++++|++.+.++ +
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~~-------------------------~~A~~VLie~i--~nldrAiE~Aerv-----n 1103 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDVN-------------------------TSAVQVLIEHI--GNLDRAYEFAERC-----N 1103 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCCH-------------------------HHHHHHHHHHH--hhHHHHHHHHHhc-----C
Confidence 77788889999999999986321 01122233345 6788888888765 6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 043158 120 DSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPS 187 (1962)
Q Consensus 120 DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd 187 (1962)
.+.+|+++|.++...|++++|+.+|++| +++.++.++|.++..+|++++|++++..|.+..++
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e 1166 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE 1166 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc
Confidence 7899999999999999999999999886 88889999999999999999999999888887754
No 210
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.76 E-value=9.4e-05 Score=72.22 Aligned_cols=70 Identities=10% Similarity=-0.067 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 043158 85 FLALKNLATVFLQQGS-SHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNN 154 (1962)
Q Consensus 85 ylAykNLG~lLl~~g~-Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~ 154 (1962)
...+..+|.+++..+. ...++|..+|++||++||+++.+++.+|.++...|+|++|+.+|+++++.+|..
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 4678889999976621 127999999999999999999999999999999999999999999999999983
No 211
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.75 E-value=0.00011 Score=89.90 Aligned_cols=88 Identities=10% Similarity=0.005 Sum_probs=77.3
Q ss_pred HHHcCCCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCCCHHH---H
Q 043158 95 FLQQGSSHYESALRCYLQAVEI-----DTKD---SVVWNQLGTLACSMGLLSISRWAFEQGLLC-----SPNNWNC---M 158 (1962)
Q Consensus 95 Ll~~g~Gr~eEALe~y~rALaL-----DP~D---aeaW~nLG~al~~LGr~eeAr~alErALeL-----dPd~~~A---l 158 (1962)
+... |++++|++.|+++|++ .|++ +..+.+||.++..+|++++|+..++++|++ -|+||.. +
T Consensus 297 ~~~~--g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 297 LKAH--WKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHT--TCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHhh--ccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 3345 8999999999999975 4555 467999999999999999999999999974 4777665 7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 043158 159 EKLLEVLIAIGDEVACLSVAELILRH 184 (1962)
Q Consensus 159 ~nLg~aL~~LGdyeeAL~~~~rALeL 184 (1962)
.|||.++..+|++++|+..+++|+++
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999986
No 212
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.71 E-value=0.00021 Score=73.32 Aligned_cols=99 Identities=13% Similarity=0.029 Sum_probs=82.2
Q ss_pred HHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHH
Q 043158 39 EGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQ----QGSSHYESALRCYLQAV 114 (1962)
Q Consensus 39 kAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~----~g~Gr~eEALe~y~rAL 114 (1962)
.|..+...+..++|.+.|+++.+.. ...+++|+|.++.. . +++++|+..|++|.
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g--------------------~~~a~~~Lg~~y~~G~g~~--~d~~~A~~~~~~Aa 88 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELN--------------------SGNGCRFLGDFYENGKYVK--KDLRKAAQYYSKAC 88 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHCSSSC--CCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCC--------------------CHHHHHHHHHHHHcCCCCC--ccHHHHHHHHHHHH
Confidence 3444455577888999999887642 24789999999998 5 79999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 043158 115 EIDTKDSVVWNQLGTLACS----MGLLSISRWAFEQGLLCSPNNWNCMEKLLE 163 (1962)
Q Consensus 115 aLDP~DaeaW~nLG~al~~----LGr~eeAr~alErALeLdPd~~~Al~nLg~ 163 (1962)
+. .++.++++||.++.. .+++++|+..|++|.+. .++.+..+|+.
T Consensus 89 ~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l~~ 137 (138)
T 1klx_A 89 GL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL--GSEDACGILNN 137 (138)
T ss_dssp HT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHC--
T ss_pred cC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHhh
Confidence 88 789999999999999 99999999999999988 67777777653
No 213
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.51 E-value=0.00036 Score=74.76 Aligned_cols=94 Identities=9% Similarity=-0.105 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHhC-C-CCHHH
Q 043158 49 YDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSS---HYESALRCYLQAVEID-T-KDSVV 123 (1962)
Q Consensus 49 feEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~G---r~eEALe~y~rALaLD-P-~Daea 123 (1962)
...+.+.|.+.++..+ + ...+.+++|.+|... + +.++|+..|+..+..+ | +..++
T Consensus 14 l~~~~~~y~~e~~~~~-----~-------------~~~~~F~ya~~Lv~S--~~~~~~~~gI~lLe~ll~~~~p~~~rd~ 73 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-----V-------------SKSTQFEYAWCLVRS--KYNDDIRKGIVLLEELLPKGSKEEQRDY 73 (152)
T ss_dssp HHHHHHHHHHHHHTTC-----C-------------CHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCC-----C-------------cHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHhcCCccchHHH
Confidence 4456677777766321 0 136788999999986 5 6779999999999999 7 67999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q 043158 124 WNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLL 162 (1962)
Q Consensus 124 W~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg 162 (1962)
+|+||..+.++|+|+.|+.+++++|+++|+|..|..-+.
T Consensus 74 lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~ 112 (152)
T 1pc2_A 74 VFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELER 112 (152)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 999999999999999999999999999999998865443
No 214
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.48 E-value=0.00056 Score=71.21 Aligned_cols=99 Identities=8% Similarity=-0.043 Sum_probs=90.9
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH---HHHHHHHHHhcC-C-CCHHHHHHHHHHHHHcCCHHHHHH
Q 043158 102 HYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSI---SRWAFEQGLLCS-P-NNWNCMEKLLEVLIAIGDEVACLS 176 (1962)
Q Consensus 102 r~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~ee---Ar~alErALeLd-P-d~~~Al~nLg~aL~~LGdyeeAL~ 176 (1962)
.+..+...|.++++.++...++-+++|.++........ ++..++..+.-+ | ...++++.||..++++|+|..|..
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 36677888999999999999999999999999998888 999999999987 6 678999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHhhh
Q 043158 177 VAELILRHWPSHSRALHVKNTIEE 200 (1962)
Q Consensus 177 ~~~rALeLdPd~a~Al~lk~~I~~ 200 (1962)
+++..|+.+|++..|..++..|..
T Consensus 96 ~~~~lL~~eP~n~QA~~Lk~~i~~ 119 (126)
T 1nzn_A 96 YVRGLLQTEPQNNQAKELERLIDK 119 (126)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999999999999988754
No 215
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.39 E-value=0.00072 Score=81.59 Aligned_cols=98 Identities=6% Similarity=-0.157 Sum_probs=77.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh--------HHHHHHHH--HHHhcCCCCHHHHHHHHHHHHHcCC
Q 043158 101 SHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLL--------SISRWAFE--QGLLCSPNNWNCMEKLLEVLIAIGD 170 (1962)
Q Consensus 101 Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~--------eeAr~alE--rALeLdPd~~~Al~nLg~aL~~LGd 170 (1962)
+.+.+|+++|++|+++||+.+.+|-.++.++...... .....+++ .++..+|+.+.++..++.++...|+
T Consensus 213 ~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd 292 (372)
T 3ly7_A 213 KSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGK 292 (372)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCC
Confidence 3479999999999999999999999999888632211 11122333 2446789999999999999988899
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHhh
Q 043158 171 EVACLSVAELILRHWPSHSRALHVKNTIE 199 (1962)
Q Consensus 171 yeeAL~~~~rALeLdPd~a~Al~lk~~I~ 199 (1962)
+++|+..+++|++++|+ ..++.+++.+.
T Consensus 293 ~d~A~~~l~rAl~Ln~s-~~a~~llG~~~ 320 (372)
T 3ly7_A 293 TDESYQAINTGIDLEMS-WLNYVLLGKVY 320 (372)
T ss_dssp HHHHHHHHHHHHHHCCC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCC-HHHHHHHHHHH
Confidence 99999999999999975 56666666653
No 216
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.11 E-value=0.00072 Score=83.40 Aligned_cols=119 Identities=11% Similarity=0.013 Sum_probs=89.7
Q ss_pred HHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC
Q 043158 39 EGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQAVEIDT 118 (1962)
Q Consensus 39 kAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP 118 (1962)
.|..+.+.|+|++|.++|+++- ...+|+..+.++.+. |+++.|..|..+ |...|
T Consensus 154 LA~~L~~Lg~yq~AVea~~KA~-----------------------~~~~Wk~v~~aCv~~--~ef~lA~~~~l~-L~~~a 207 (449)
T 1b89_A 154 LASTLVHLGEYQAAVDGARKAN-----------------------STRTWKEVCFACVDG--KEFRLAQMCGLH-IVVHA 207 (449)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHT-----------------------CHHHHHHHHHHHHHT--TCHHHHHHTTTT-TTTCH
T ss_pred HHHHHHHhccHHHHHHHHHHcC-----------------------CchhHHHHHHHHHHc--CcHHHHHHHHHH-HHhCH
Confidence 4555555566666666666552 236799999999998 899999888885 44555
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCC
Q 043158 119 KDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLI--AIGDEVACLSVAELILRHWP 186 (1962)
Q Consensus 119 ~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~--~LGdyeeAL~~~~rALeLdP 186 (1962)
++ ...+...+.+.|++++|+..|+++|.++|.|...+..||.++. ..|+..+.+..|...+.+.|
T Consensus 208 d~---l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k 274 (449)
T 1b89_A 208 DE---LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPK 274 (449)
T ss_dssp HH---HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHH
T ss_pred hh---HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcH
Confidence 44 4468889999999999999999999999999999999987774 45777788777765555543
No 217
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.06 E-value=0.0036 Score=81.00 Aligned_cols=135 Identities=9% Similarity=0.031 Sum_probs=109.7
Q ss_pred HHCCCHHHHHHHHHHHhcC-CcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHH
Q 043158 44 LQSKEYDKAQELLESVLKD-PLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSV 122 (1962)
Q Consensus 44 ~qqGRfeEA~eaY~raLa~-p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~Dae 122 (1962)
.+.|..+.|..+|.++++. +.. .+..|...|.+-...+ ++.+.|...|+++|+.-|+++.
T Consensus 445 rR~~~l~~AR~vf~~A~~~~~~~------------------~~~lyi~~A~lE~~~~-~d~e~Ar~ife~~Lk~~p~~~~ 505 (679)
T 4e6h_A 445 KRIQGLAASRKIFGKCRRLKKLV------------------TPDIYLENAYIEYHIS-KDTKTACKVLELGLKYFATDGE 505 (679)
T ss_dssp HHHHCHHHHHHHHHHHHHTGGGS------------------CTHHHHHHHHHHHTTT-SCCHHHHHHHHHHHHHHTTCHH
T ss_pred HHcCCHHHHHHHHHHHHHhcCCC------------------ChHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHCCCchH
Confidence 3457788899999998875 210 1234555566555553 5699999999999999999999
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 043158 123 VWNQLGTLACSMGLLSISRWAFEQGLLCSPN---NWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSRALHVKNT 197 (1962)
Q Consensus 123 aW~nLG~al~~LGr~eeAr~alErALeLdPd---~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~ 197 (1962)
+|...+......|+.+.||..|++|+...|+ ....|......-...|+.+.+.....++++..|++........+
T Consensus 506 ~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~f~~r 583 (679)
T 4e6h_A 506 YINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEEFTNK 583 (679)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 9999999999999999999999999999984 56778888888888999999999999999999998765544444
No 218
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.87 E-value=0.0023 Score=75.10 Aligned_cols=69 Identities=12% Similarity=0.063 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHc-CChHHHHHHHHHHHhcCCCC
Q 043158 85 FLALKNLATVFLQQ----GSSHYESALRCYLQAVEIDTKD-SVVWNQLGTLACSM-GLLSISRWAFEQGLLCSPNN 154 (1962)
Q Consensus 85 ylAykNLG~lLl~~----g~Gr~eEALe~y~rALaLDP~D-aeaW~nLG~al~~L-Gr~eeAr~alErALeLdPd~ 154 (1962)
-.+|.-+|.+|... | |+.++|..+|++||+++|+. .++++..|..++.. |++++|..++++|++.+|..
T Consensus 199 GsA~~~LG~lY~~vPp~~g-Gd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 199 GAVWNVLTKFYAAAPESFG-GGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHHHHHSCTTTT-CCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred CHHHHHHHHHHHhCCCccC-CCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 46899999999994 3 89999999999999999975 99999999999885 99999999999999999885
No 219
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=96.74 E-value=0.01 Score=76.78 Aligned_cols=100 Identities=10% Similarity=0.100 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 043158 86 LALKNLATVFLQQGSSHYESALRCYLQAVEI-DTKDSVVWNQLGTLACSMGL-LSISRWAFEQGLLCSPNNWNCMEKLLE 163 (1962)
Q Consensus 86 lAykNLG~lLl~~g~Gr~eEALe~y~rALaL-DP~DaeaW~nLG~al~~LGr-~eeAr~alErALeLdPd~~~Al~nLg~ 163 (1962)
.+|..++.+..+. |..+.|...|.+|++. .+....+|...|.+-...|. ++.|+..|+++|+.-|+.+..|...+.
T Consensus 435 ~vWi~y~~~erR~--~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~ 512 (679)
T 4e6h_A 435 YVYCVYMNTMKRI--QGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLD 512 (679)
T ss_dssp HHHHHHHHHHHHH--HCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence 4688888888888 7899999999999998 55668899888888777765 999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCC
Q 043158 164 VLIAIGDEVACLSVAELILRHWPS 187 (1962)
Q Consensus 164 aL~~LGdyeeAL~~~~rALeLdPd 187 (1962)
.+...|+.+.|...|++|+...|+
T Consensus 513 fe~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 513 FLIYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp HHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred HHHhCCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999884
No 220
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.09 E-value=0.062 Score=57.17 Aligned_cols=84 Identities=8% Similarity=0.001 Sum_probs=75.7
Q ss_pred CCCCHHHHHHHHHHHHHcCChH---HHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 043158 117 DTKDSVVWNQLGTLACSMGLLS---ISRWAFEQGLLCSP-NNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSRAL 192 (1962)
Q Consensus 117 DP~DaeaW~nLG~al~~LGr~e---eAr~alErALeLdP-d~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~Al 192 (1962)
++-.+..-|++|.++....... .++..++..+.-+| +..++++-||..++++|+|..|..+++..|+.+|++..|.
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 3568899999999999988765 68899999999998 5689999999999999999999999999999999999999
Q ss_pred HHHHHhhh
Q 043158 193 HVKNTIEE 200 (1962)
Q Consensus 193 ~lk~~I~~ 200 (1962)
.++..|+.
T Consensus 115 ~Lk~~Ie~ 122 (144)
T 1y8m_A 115 ALKSMVED 122 (144)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99888754
No 221
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=95.88 E-value=0.043 Score=59.64 Aligned_cols=72 Identities=11% Similarity=0.023 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 043158 35 QTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQAV 114 (1962)
Q Consensus 35 alYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rAL 114 (1962)
.++.+.-.++..|.|+.|+-++.-++...... + + ....+.+|.++..+|.+++.. ++|..|...|++||
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~---~-~-----~~sp~~~~~~l~~ladalf~~--~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNN---P-E-----LFSPPQKYQLLVYHADSLFHD--KEYRNAVSKYTMAL 90 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS---T-T-----SSCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCC---c-c-----cccHHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHH
Confidence 35677778889999999999999988753100 0 1 001344789999999999999 89999999999997
Q ss_pred HhC
Q 043158 115 EID 117 (1962)
Q Consensus 115 aLD 117 (1962)
++.
T Consensus 91 q~~ 93 (167)
T 3ffl_A 91 QQK 93 (167)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 222
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=95.66 E-value=0.19 Score=62.35 Aligned_cols=167 Identities=16% Similarity=0.007 Sum_probs=106.2
Q ss_pred hhhcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhc---------cCCCC----CchhhhH------Hh
Q 043158 24 EAQARPESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQA---------ADGKS----SDGHLLQ------LR 84 (1962)
Q Consensus 24 EaQa~~eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~---------~d~~~----s~s~lLq------L~ 84 (1962)
|-|+...+.|-+.|..++...-.|+++.|..+|++++..-|....+. .+... .+..++. ..
T Consensus 5 ~~~~~~i~~aR~vyer~l~~~P~~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s 84 (493)
T 2uy1_A 5 EKMGVELSSPSAIMEHARRLYMSKDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDS 84 (493)
T ss_dssp -------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTC
T ss_pred HHcCcchHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCccc
Confidence 34433477899999999999999999999999999998543111110 00000 1122221 13
Q ss_pred HHHHHHHHHHHH----HcCCCCHHHHHHHHHHHHHhCCCCHH--------------------------------------
Q 043158 85 FLALKNLATVFL----QQGSSHYESALRCYLQAVEIDTKDSV-------------------------------------- 122 (1962)
Q Consensus 85 ylAykNLG~lLl----~~g~Gr~eEALe~y~rALaLDP~Dae-------------------------------------- 122 (1962)
+..|.....++. .. |+.+.+...|++||..-+.+.+
T Consensus 85 ~~iW~~Yi~f~~~~~~~~--~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~ 162 (493)
T 2uy1_A 85 YGLYKEYIEEEGKIEDEQ--TRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQ 162 (493)
T ss_dssp HHHHHHHHHHTSSCSSHH--HHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhchhhh--HHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHH
Confidence 466666666654 23 4578888899999885322222
Q ss_pred -----------HHHHHHHHHHHc--CC-----hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 043158 123 -----------VWNQLGTLACSM--GL-----LSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRH 184 (1962)
Q Consensus 123 -----------aW~nLG~al~~L--Gr-----~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeL 184 (1962)
.|......-... |- .+..+..|++||...|..+..|.+.+..+...|+.+.|...|++|+..
T Consensus 163 ~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 163 IQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM 242 (493)
T ss_dssp HHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 232222221111 11 234567899999999999999999999888999999999999999999
Q ss_pred CCCCHHHHH
Q 043158 185 WPSHSRALH 193 (1962)
Q Consensus 185 dPd~a~Al~ 193 (1962)
|.....+.
T Consensus 243 -P~~~~l~~ 250 (493)
T 2uy1_A 243 -SDGMFLSL 250 (493)
T ss_dssp -CCSSHHHH
T ss_pred -CCcHHHHH
Confidence 88764443
No 223
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.47 E-value=0.064 Score=56.45 Aligned_cols=84 Identities=8% Similarity=-0.004 Sum_probs=70.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 043158 117 DTKDSVVWNQLGTLACSMGLL---SISRWAFEQGLLCSP-NNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSRAL 192 (1962)
Q Consensus 117 DP~DaeaW~nLG~al~~LGr~---eeAr~alErALeLdP-d~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~Al 192 (1962)
+.-.+..-+++|.++.+.... ..++..++..+.-+| ...++++-||..++.+|+|..|..+.+..|+.+|++..|.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 334678888888888887765 358888888888888 4588899999999999999999999999999999999999
Q ss_pred HHHHHhhh
Q 043158 193 HVKNTIEE 200 (1962)
Q Consensus 193 ~lk~~I~~ 200 (1962)
.++..|..
T Consensus 116 ~Lk~~Ie~ 123 (134)
T 3o48_A 116 ALKSMVED 123 (134)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887743
No 224
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=95.35 E-value=0.17 Score=62.76 Aligned_cols=142 Identities=15% Similarity=0.113 Sum_probs=104.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhc---c---CCCCCchhhh----------------HHhHHHHHHHHH
Q 043158 36 TYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQA---A---DGKSSDGHLL----------------QLRFLALKNLAT 93 (1962)
Q Consensus 36 lYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~---~---d~~~s~s~lL----------------qL~ylAykNLG~ 93 (1962)
++.-|.-+.+.|+.++|...|++++.. |.....+ + ........+. .-....|...+.
T Consensus 216 W~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~ 294 (493)
T 2uy1_A 216 YFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLN 294 (493)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHH
Confidence 444444466789999999999999977 4221111 0 0000000000 002356888888
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 043158 94 VFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMG-LLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEV 172 (1962)
Q Consensus 94 lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LG-r~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdye 172 (1962)
+..+. +..+.|...|.+| ...+....+|...|.+-...| +.+.|+..|+.+++.-|+.+..+...+..+..+|+.+
T Consensus 295 ~~~r~--~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~ 371 (493)
T 2uy1_A 295 YVLKK--RGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEE 371 (493)
T ss_dssp HHHHH--HCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHc--CCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHH
Confidence 88777 6799999999999 443446788988887777777 5999999999999999999998888888888999999
Q ss_pred HHHHHHHHH
Q 043158 173 ACLSVAELI 181 (1962)
Q Consensus 173 eAL~~~~rA 181 (1962)
.|...|+++
T Consensus 372 ~aR~l~er~ 380 (493)
T 2uy1_A 372 NARALFKRL 380 (493)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHHH
Confidence 999999887
No 225
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.34 E-value=0.44 Score=57.55 Aligned_cols=110 Identities=14% Similarity=0.066 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCC---cccchhccCCCCCc----hhhhHHhHHHHHHHHHHHHHcCCCCHHHH
Q 043158 34 TQTYHEGLLKLQSKEYDKAQELLESVLKDP---LIANAQAADGKSSD----GHLLQLRFLALKNLATVFLQQGSSHYESA 106 (1962)
Q Consensus 34 lalYqkAL~L~qqGRfeEA~eaY~raLa~p---~lk~a~~~d~~~s~----s~lLqL~ylAykNLG~lLl~~g~Gr~eEA 106 (1962)
..+...|......|+.++|.+.|+++|++- ++... + + .... ..+-..+..+...++.++... |++.+|
T Consensus 116 ~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~-~-~-~~w~~~~r~~l~~~~~~a~~~~~~~~l~~--g~~~~a 190 (388)
T 2ff4_A 116 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDL-R-D-FQFVEPFATALVEDKVLAHTAKAEAEIAC--GRASAV 190 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGG-T-T-STTHHHHHHHHHHHHHHHHHHHHHHHHHT--TCHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCC-C-c-hhHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCHHHH
Confidence 445566666677899999999999999852 11110 0 0 0000 111222334555566666666 677777
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 043158 107 LRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGL 148 (1962)
Q Consensus 107 Le~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErAL 148 (1962)
+..+.++++.+|-+-.+|..+-.++...|+..+|+..|+++-
T Consensus 191 ~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 191 IAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777777777777777777777777777777777776666543
No 226
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=94.24 E-value=0.14 Score=64.10 Aligned_cols=80 Identities=18% Similarity=0.140 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 043158 86 LALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVL 165 (1962)
Q Consensus 86 lAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL 165 (1962)
..+.+||.+..-+ +.+..|..+|.+|+.+.|+....|+.||.++...|+.-+|.++|-++|....-++.|..||..++
T Consensus 153 r~l~~LGDL~RY~--~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f 230 (497)
T 1ya0_A 153 HCLVHLGDIARYR--NQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred HHHHHcccHHHHH--HHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHH
Confidence 4566889988888 78999999999999999999999999999999999999999999999999988999999998877
Q ss_pred HH
Q 043158 166 IA 167 (1962)
Q Consensus 166 ~~ 167 (1962)
..
T Consensus 231 ~~ 232 (497)
T 1ya0_A 231 SK 232 (497)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 227
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.81 E-value=0.12 Score=53.81 Aligned_cols=74 Identities=8% Similarity=-0.101 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHH
Q 043158 86 LALKNLATVFLQQGSSH---YESALRCYLQAVEID-T-KDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEK 160 (1962)
Q Consensus 86 lAykNLG~lLl~~g~Gr---~eEALe~y~rALaLD-P-~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~n 160 (1962)
.+-+++|.++... .+ ..+++..++..+.-+ | ..-+..|.||..+.++|+|..|+.+++..|+.+|++..|..-
T Consensus 36 ~~~F~yAw~Lv~S--~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~L 113 (126)
T 1nzn_A 36 STQFEYAWCLVRT--RYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKEL 113 (126)
T ss_dssp HHHHHHHHHHTTS--SSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 5677888888765 44 445999999998887 5 678999999999999999999999999999999999888643
Q ss_pred H
Q 043158 161 L 161 (1962)
Q Consensus 161 L 161 (1962)
.
T Consensus 114 k 114 (126)
T 1nzn_A 114 E 114 (126)
T ss_dssp H
T ss_pred H
Confidence 3
No 228
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.38 E-value=0.41 Score=51.60 Aligned_cols=104 Identities=11% Similarity=-0.029 Sum_probs=93.0
Q ss_pred hHHHHHHHHHHHHHcCCCCH------HHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 043158 84 RFLALKNLATVFLQQGSSHY------ESALRCYLQAVEIDTKD--------SVVWNQLGTLACSMGLLSISRWAFEQGLL 149 (1962)
Q Consensus 84 ~ylAykNLG~lLl~~g~Gr~------eEALe~y~rALaLDP~D--------aeaW~nLG~al~~LGr~eeAr~alErALe 149 (1962)
+|..|.+....+... |+. ++-++.|++|++.-|-+ +-+|.+.+.. ..+++.++|+..|..|+.
T Consensus 12 ~yd~W~~yl~llE~~--g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKN--SVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARA 88 (161)
T ss_dssp SHHHHHHHHHHHHHH--TCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc--CCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHH
Confidence 588999999999988 777 89999999999998863 6788888866 677999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 043158 150 CSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSR 190 (1962)
Q Consensus 150 LdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~ 190 (1962)
+...++..|...|.--.+.|+...|...+.+|+.+.|....
T Consensus 89 ~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 89 NCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred HhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 98888889999999889999999999999999999988654
No 229
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.14 E-value=0.7 Score=55.78 Aligned_cols=97 Identities=14% Similarity=0.052 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCH----------------------HHHHHHHHHHHHcCChHHHH
Q 043158 84 RFLALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDS----------------------VVWNQLGTLACSMGLLSISR 141 (1962)
Q Consensus 84 ~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~Da----------------------eaW~nLG~al~~LGr~eeAr 141 (1962)
.+..+...|...... |+.++|++.|.+|+++--.++ .+...++.++...|++.+|+
T Consensus 114 ~f~~l~~~~~~~~~~--~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~ 191 (388)
T 2ff4_A 114 RFVAEKTAGVHAAAA--GRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI 191 (388)
T ss_dssp HHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 345555566666666 889999999999999864321 23345677888999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043158 142 WAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELIL 182 (1962)
Q Consensus 142 ~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rAL 182 (1962)
..+++++..+|-+-.++..|-.+|+..|+..+|+..|++.-
T Consensus 192 ~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 192 AELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999997653
No 230
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.07 E-value=0.24 Score=53.88 Aligned_cols=91 Identities=4% Similarity=-0.039 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHcCChHHHHHHHHHHHhcC------
Q 043158 87 ALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSV---------VWNQLGTLACSMGLLSISRWAFEQGLLCS------ 151 (1962)
Q Consensus 87 AykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~Dae---------aW~nLG~al~~LGr~eeAr~alErALeLd------ 151 (1962)
++..-...+++. |.|+.|+....-++.+..++++ +...+|.++...|+|..|...|++||...
T Consensus 22 ~l~dqik~L~d~--~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~ 99 (167)
T 3ffl_A 22 NVIDHVRDMAAA--GLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT 99 (167)
T ss_dssp CHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHh--hhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 445555666677 7899999998887777655555 88999999999999999999999997642
Q ss_pred C-------------------CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 043158 152 P-------------------NNWNCMEKLLEVLIAIGDEVACLSVAE 179 (1962)
Q Consensus 152 P-------------------d~~~Al~nLg~aL~~LGdyeeAL~~~~ 179 (1962)
| .+.+..+.++.++..+|++.+|+...+
T Consensus 100 ~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le 146 (167)
T 3ffl_A 100 SKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILD 146 (167)
T ss_dssp -----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHh
Confidence 1 123678999999999999999999654
No 231
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=92.72 E-value=0.53 Score=59.81 Aligned_cols=85 Identities=13% Similarity=0.128 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHH--------HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHH
Q 043158 85 FLALKNLATVFLQQGSSHYESALRCYLQA--------VEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWN 156 (1962)
Q Consensus 85 ylAykNLG~lLl~~g~Gr~eEALe~y~rA--------LaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~ 156 (1962)
-..|.++|.++.+. |+++.|+.||.++ |.....+.+.+..+|..+...|++..|..+|.+. +.
T Consensus 681 ~~~W~~la~~al~~--~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~-----g~-- 751 (814)
T 3mkq_A 681 EMKWRALGDASLQR--FNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIA-----GD-- 751 (814)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-----TC--
T ss_pred HhHHHHHHHHHHHc--CCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHc-----CC--
Confidence 36789999999998 8999999999976 4444667777778888888888887777665542 11
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 043158 157 CMEKLLEVLIAIGDEVACLSVAE 179 (1962)
Q Consensus 157 Al~nLg~aL~~LGdyeeAL~~~~ 179 (1962)
......+|..++++++|+...+
T Consensus 752 -~~~a~~~~~~~~~~~~A~~lA~ 773 (814)
T 3mkq_A 752 -IQGAKDLLIKSQRFSEAAFLGS 773 (814)
T ss_dssp -HHHHHHHHHHTTCHHHHHHHHH
T ss_pred -HHHHHHHHHHcCChHHHHHHHH
Confidence 1122345666666666666433
No 232
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.19 E-value=0.64 Score=49.04 Aligned_cols=76 Identities=9% Similarity=-0.033 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHH
Q 043158 86 LALKNLATVFLQQGS-SHYESALRCYLQAVEIDTK-DSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKL 161 (1962)
Q Consensus 86 lAykNLG~lLl~~g~-Gr~eEALe~y~rALaLDP~-DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nL 161 (1962)
.+-+|+|-++..... ++..+++..+...+..+|. .-+.+|.||..+.++|+|..|+.+.+..|+.+|++..|..-.
T Consensus 41 qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 41 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 567788887777521 3466899999999999994 589999999999999999999999999999999998886433
No 233
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=91.10 E-value=2.6 Score=52.51 Aligned_cols=121 Identities=11% Similarity=0.034 Sum_probs=95.1
Q ss_pred CHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Q 043158 48 EYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQAVEID-TKDSVVWNQ 126 (1962)
Q Consensus 48 RfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rALaLD-P~DaeaW~n 126 (1962)
.+++|.++|++...... .| +..+|..+-..+... |++++|++.|.+..+.. .-|...|..
T Consensus 85 ~l~~A~~lf~~M~~~G~----~P-------------d~~tyn~lI~~~~~~--g~~~~A~~l~~~M~~~g~~Pd~~tyn~ 145 (501)
T 4g26_A 85 GLSRGFDIFKQMIVDKV----VP-------------NEATFTNGARLAVAK--DDPEMAFDMVKQMKAFGIQPRLRSYGP 145 (501)
T ss_dssp HHHHHHHHHHHHHHTTC----CC-------------CHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCC----CC-------------CHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCCccceehH
Confidence 36777777777665321 11 236788888889998 89999999999988763 237889999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCC
Q 043158 127 LGTLACSMGLLSISRWAFEQGLLCS--PNNWNCMEKLLEVLIAIGDEVACLSVAELILR--HWPSH 188 (1962)
Q Consensus 127 LG~al~~LGr~eeAr~alErALeLd--Pd~~~Al~nLg~aL~~LGdyeeAL~~~~rALe--LdPd~ 188 (1962)
+-.++.+.|+.++|...|++..+.. |+ ...+..|..++...|+.++|...+++.-+ ..|+.
T Consensus 146 lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd-~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~ 210 (501)
T 4g26_A 146 ALFGFCRKGDADKAYEVDAHMVESEVVPE-EPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSK 210 (501)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCH
Confidence 9999999999999999999988753 43 66788999999999999999999876554 34543
No 234
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=90.98 E-value=1.2 Score=47.41 Aligned_cols=74 Identities=9% Similarity=-0.004 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHH
Q 043158 86 LALKNLATVFLQQGS-SHYESALRCYLQAVEIDT-KDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCME 159 (1962)
Q Consensus 86 lAykNLG~lLl~~g~-Gr~eEALe~y~rALaLDP-~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~ 159 (1962)
.+-+|+|-+|..... .+..+++..++..+.-+| ..-+..|.||..+.++|+|..|+.+.+..|+.+|++..|..
T Consensus 40 ~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 40 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 567788888877521 346789999999999998 56899999999999999999999999999999999988753
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=90.32 E-value=3.3 Score=44.81 Aligned_cols=113 Identities=11% Similarity=-0.048 Sum_probs=86.3
Q ss_pred cHHHHHHHHHHHHHCCCH------HHHHHHHHHHhc-CCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHH
Q 043158 32 HLTQTYHEGLLKLQSKEY------DKAQELLESVLK-DPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYE 104 (1962)
Q Consensus 32 eAlalYqkAL~L~qqGRf------eEA~eaY~raLa-~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~e 104 (1962)
+...++.-+..+.+.|+. ++-.+.|+++++ .||-+...+ .+ ..-.|.+.|.+ ... ++.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~w-------rr----YI~LWIrYA~~-~ei--~D~d 77 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQN-------ES----FARIQVRFAEL-KAI--QEPD 77 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTC-------HH----HHHHHHHHHHH-HHH--HCGG
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccH-------HH----HHHHHHHHHHH-HHh--cCHH
Confidence 445566666666666887 788899999996 554321111 11 12345555644 444 6899
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHH
Q 043158 105 SALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCM 158 (1962)
Q Consensus 105 EALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al 158 (1962)
+|.+.|..|+.+....+-+|...|..-.++|+...|+..+.+|+.+.|...+.+
T Consensus 78 ~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 78 DARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp GCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 999999999999999999999999999999999999999999999999876654
No 236
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=89.30 E-value=4.9 Score=50.11 Aligned_cols=132 Identities=11% Similarity=0.036 Sum_probs=96.8
Q ss_pred HHHHHHHH-HHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcC-------CCCHHHH
Q 043158 35 QTYHEGLL-KLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQG-------SSHYESA 106 (1962)
Q Consensus 35 alYqkAL~-L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g-------~Gr~eEA 106 (1962)
..+...+. +.+.|++++|.++|++..+... .| + ..+|..+=.++...+ .++.++|
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv----~p-d------------~~tyn~Li~~c~~~~~~~~~~~~~~l~~A 89 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGV----QL-S------------QYHYNVLLYVCSLAEAATESSPNPGLSRG 89 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTC----CC-C------------HHHHHHHHHHHTTCCCCSSSSCCHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----CC-C------------HhHHHHHHHHHHhCCchhhhhhcchHHHH
Confidence 34444444 4567999999999999876321 11 1 233443333443321 0347899
Q ss_pred HHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043158 107 LRCYLQAVEIDT-KDSVVWNQLGTLACSMGLLSISRWAFEQGLLC--SPNNWNCMEKLLEVLIAIGDEVACLSVAELILR 183 (1962)
Q Consensus 107 Le~y~rALaLDP-~DaeaW~nLG~al~~LGr~eeAr~alErALeL--dPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALe 183 (1962)
.+.|.+.....- -|...|..+-.++.+.|++++|...|++..+. .| +...+..+...+...|+.++|...++...+
T Consensus 90 ~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 90 FDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQP-RLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 999998877642 37889999999999999999999999988764 35 467788899999999999999999988765
Q ss_pred h
Q 043158 184 H 184 (1962)
Q Consensus 184 L 184 (1962)
.
T Consensus 169 ~ 169 (501)
T 4g26_A 169 S 169 (501)
T ss_dssp T
T ss_pred c
Confidence 4
No 237
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=88.80 E-value=1.2 Score=56.06 Aligned_cols=78 Identities=13% Similarity=-0.000 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhh
Q 043158 123 VWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSRALHVKNTIEE 200 (1962)
Q Consensus 123 aW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~Al~lk~~I~~ 200 (1962)
....||.+.+-...+..|+.+|++|+.++|++...+.+||.+....|+.-+|+-+|.|++....-++.|..++..++.
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 566789999999999999999999999999999999999999999999999999999999988788888888777654
No 238
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=86.98 E-value=2.3 Score=55.97 Aligned_cols=58 Identities=10% Similarity=-0.018 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 043158 121 SVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVA 178 (1962)
Q Consensus 121 aeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~ 178 (1962)
..++.-=+..+...|+++.|+.+-.+|+.+.|....+|+.|+.+|..+|||+.|+-.+
T Consensus 337 ~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtL 394 (754)
T 4gns_B 337 SDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAI 394 (754)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHH
Confidence 3455556778888999999999999999999999999999999999999999999743
No 239
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=85.78 E-value=3.1 Score=52.93 Aligned_cols=77 Identities=17% Similarity=0.105 Sum_probs=55.3
Q ss_pred HHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH--------hcCCCCHHHHHHHHHHHH
Q 043158 95 FLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGL--------LCSPNNWNCMEKLLEVLI 166 (1962)
Q Consensus 95 Ll~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErAL--------eLdPd~~~Al~nLg~aL~ 166 (1962)
..+. |++++|.+.. ...+++..|.++|..+.+.|+++.|..||.++= .....+.+.+..++....
T Consensus 662 ~l~~--~~~~~A~~~~-----~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 662 ALKV--GQLTLARDLL-----TDESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHHH--TCHHHHHHHH-----TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhc--CCHHHHHHHH-----HhhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 3455 7899988874 345789999999999999999999999999862 222455555556665555
Q ss_pred HcCCHHHHHHHH
Q 043158 167 AIGDEVACLSVA 178 (1962)
Q Consensus 167 ~LGdyeeAL~~~ 178 (1962)
..|++..|..+|
T Consensus 735 ~~~~~~~A~~~~ 746 (814)
T 3mkq_A 735 TTGKFNLAFNAY 746 (814)
T ss_dssp HTTCHHHHHHHH
T ss_pred HcCchHHHHHHH
Confidence 555555555443
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=85.32 E-value=1.7 Score=57.16 Aligned_cols=59 Identities=17% Similarity=0.180 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 043158 87 ALKNLATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQG 147 (1962)
Q Consensus 87 AykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErA 147 (1962)
.+.--+.++..+ |+++-|+.+-++|+...|.+...|+.|+.+|..+|+|+.|+..+..+
T Consensus 339 LL~~Qa~FLl~K--~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNR--GDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHT--TCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhcc--CcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 344457777777 89999999999999999999999999999999999999999776654
No 241
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=84.61 E-value=4.4 Score=47.30 Aligned_cols=60 Identities=17% Similarity=0.217 Sum_probs=56.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHH
Q 043158 101 SHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEK 160 (1962)
Q Consensus 101 Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~n 160 (1962)
|.+++|++.....+..+|.|++..-.|-.+++-.|+++.|..-++-+.+++|+..+....
T Consensus 11 g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~ 70 (273)
T 1zbp_A 11 GQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQ 70 (273)
T ss_dssp TCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHH
Confidence 889999999999999999999999999999999999999999999999999998776433
No 242
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=79.47 E-value=23 Score=38.96 Aligned_cols=81 Identities=15% Similarity=0.083 Sum_probs=54.4
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 043158 32 HLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYL 111 (1962)
Q Consensus 32 eAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~ 111 (1962)
+....|..|+ +.|+++.|.+..+++ .. ..-|+.||...+.. |+++-|..||.
T Consensus 7 D~~~rF~LAL---~lg~l~~A~e~a~~l-~~----------------------~~~Wk~Lg~~AL~~--gn~~lAe~cy~ 58 (177)
T 3mkq_B 7 DPHIRFDLAL---EYGNLDAALDEAKKL-ND----------------------SITWERLIQEALAQ--GNASLAEMIYQ 58 (177)
T ss_dssp CHHHHHHHHH---HTTCHHHHHHHHHHH-CC----------------------HHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred ChHHHHHHHH---hcCCHHHHHHHHHHh-CC----------------------HHHHHHHHHHHHHc--CChHHHHHHHH
Confidence 4455667665 679999999887765 21 25799999999999 89999999999
Q ss_pred HHH--------HhCCCCHHHHHHHHHHHHHcCChHHH
Q 043158 112 QAV--------EIDTKDSVVWNQLGTLACSMGLLSIS 140 (1962)
Q Consensus 112 rAL--------aLDP~DaeaW~nLG~al~~LGr~eeA 140 (1962)
++= -.--+|.+-+..++.+....|++..|
T Consensus 59 ~~~D~~~L~~Ly~~tg~~e~L~kla~iA~~~g~~n~a 95 (177)
T 3mkq_B 59 TQHSFDKLSFLYLVTGDVNKLSKMQNIAQTREDFGSM 95 (177)
T ss_dssp HTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HhCCHHHHHHHHHHhCCHHHHHHHHHHHHHCccHHHH
Confidence 872 22223344444455555555554443
No 243
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=77.24 E-value=9 Score=42.11 Aligned_cols=46 Identities=22% Similarity=0.325 Sum_probs=40.4
Q ss_pred HHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 043158 96 LQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGL 148 (1962)
Q Consensus 96 l~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErAL 148 (1962)
.+. |+++.|.+..++. ++...|..||......|+++.|..||.++=
T Consensus 16 L~l--g~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 16 LEY--GNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHT--TCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred Hhc--CCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 445 8999999986654 789999999999999999999999999874
No 244
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=73.45 E-value=7.2 Score=45.55 Aligned_cols=69 Identities=16% Similarity=0.140 Sum_probs=61.1
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHh
Q 043158 130 LACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSRAL-HVKNTI 198 (1962)
Q Consensus 130 al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~Al-~lk~~I 198 (1962)
-+.+.|++.+|+......++-+|.++.....|-..|.-.|+++.|...++-+.+++|+..... .++..|
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI 75 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLV 75 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHH
Confidence 456789999999999999999999999999999999999999999999999999999997643 334443
No 245
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=69.46 E-value=21 Score=48.90 Aligned_cols=140 Identities=20% Similarity=0.180 Sum_probs=94.7
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhh---hH------HhHHHHHHHHHHHHHcCC
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHL---LQ------LRFLALKNLATVFLQQGS 100 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~l---Lq------L~ylAykNLG~lLl~~g~ 100 (1962)
+..+...|-+|..+...|++++|.++|+++-..-....... ...... .. .....|.....++.+.
T Consensus 839 ~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~----~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~-- 912 (1139)
T 4fhn_B 839 NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQF----AVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEE-- 912 (1139)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSC----SSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHT--
T ss_pred cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhh----hhhcccccccccccccccHHHHHHHHHHHHHHc--
Confidence 44556679999999999999999999998743100000000 000000 00 0123455667777777
Q ss_pred CCHHHHHHHHHHHHHhCCC-CH----HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 043158 101 SHYESALRCYLQAVEIDTK-DS----VVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACL 175 (1962)
Q Consensus 101 Gr~eEALe~y~rALaLDP~-Da----eaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL 175 (1962)
+.++.|+++-+.|++..+. +. ..|.++=..+..+|+|++|-.++-+. .-...--.++..|-..+...|.....+
T Consensus 913 ~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~-pd~~~r~~cLr~LV~~lce~~~~~~L~ 991 (1139)
T 4fhn_B 913 SAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL-STTPLKKSCLLDFVNQLTKQGKINQLL 991 (1139)
T ss_dssp SCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH-HHSSSCHHHHHHHHHHHHHHCCHHHHH
T ss_pred CCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHhCCChhhhh
Confidence 8899999999999998754 43 28999999999999999998877433 112234778888888887777765554
Q ss_pred H
Q 043158 176 S 176 (1962)
Q Consensus 176 ~ 176 (1962)
.
T Consensus 992 ~ 992 (1139)
T 4fhn_B 992 N 992 (1139)
T ss_dssp H
T ss_pred C
Confidence 3
No 246
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=66.36 E-value=50 Score=42.59 Aligned_cols=144 Identities=8% Similarity=0.016 Sum_probs=90.2
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 043158 36 TYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQAVE 115 (1962)
Q Consensus 36 lYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rALa 115 (1962)
++..|+......+.+.|...|.+.-....+.... ....+..+|.-+... +...+|...+.++..
T Consensus 217 ~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~--------------~~~~~~~ia~~~~~~--~~~~~~~~~~~~~~~ 280 (618)
T 1qsa_A 217 MAAVAFASVARQDAENARLMIPSLAQAQQLNEDQ--------------IQELRDIVAWRLMGN--DVTDEQAKWRDDAIM 280 (618)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHH--------------HHHHHHHHHHTSCST--TCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHhhhhccCCCHHH--------------HHHHHHHHHHHHHHc--CCChHHHHHHHhccc
Confidence 4444566666667788887777664321111000 112233344333333 436677778887766
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 043158 116 IDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHSRALHVK 195 (1962)
Q Consensus 116 LDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~Al~lk 195 (1962)
..+++..+....+ ...+.|++..|...|++.-.-.+....+.+-+|.++..+|+.++|...|+++.. +..--++.-.
T Consensus 281 ~~~~~~~~e~~~r-~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~--~~~fYg~lAa 357 (618)
T 1qsa_A 281 RSQSTSLIERRVR-MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ--QRGFYPMVAA 357 (618)
T ss_dssp TCCCHHHHHHHHH-HHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCSHHHHHHH
T ss_pred cCCChHHHHHHHH-HHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc--CCChHHHHHH
Confidence 5554444444444 455679999999999876664446678899999999999999999999999875 3444344333
Q ss_pred HHh
Q 043158 196 NTI 198 (1962)
Q Consensus 196 ~~I 198 (1962)
..+
T Consensus 358 ~~L 360 (618)
T 1qsa_A 358 QRI 360 (618)
T ss_dssp HHT
T ss_pred HHc
Confidence 333
No 247
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=61.25 E-value=16 Score=44.51 Aligned_cols=96 Identities=11% Similarity=0.001 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCCHHHHHH-
Q 043158 87 ALKNLATVFLQQGSSHYESALRCYLQAVEIDTK---DSVVWNQLGTLACSMGLLSISRWAFEQGLLCS--PNNWNCMEK- 160 (1962)
Q Consensus 87 AykNLG~lLl~~g~Gr~eEALe~y~rALaLDP~---DaeaW~nLG~al~~LGr~eeAr~alErALeLd--Pd~~~Al~n- 160 (1962)
++..+|.++.+. |++++|+++|.++...-.+ -.+++...-+++...+++..|...+.+|-.+- ..+|.....
T Consensus 133 ~~~~la~~~~~~--Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 133 AWINLGEYYAQI--GDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp CCHHHHHHHHHH--CCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 677899999999 9999999999999876433 36899999999999999999999999986653 344554433
Q ss_pred ---HHHHHHHcCCHHHHHHHHHHHHHh
Q 043158 161 ---LLEVLIAIGDEVACLSVAELILRH 184 (1962)
Q Consensus 161 ---Lg~aL~~LGdyeeAL~~~~rALeL 184 (1962)
.|.++...++|.+|...|..++.-
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 345556679999999988777655
No 248
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=58.31 E-value=40 Score=41.23 Aligned_cols=148 Identities=18% Similarity=0.043 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcC-Ccccchhcc-----------CCCCCchhhhHH----------------hH
Q 043158 34 TQTYHEGLLKLQSKEYDKAQELLESVLKD-PLIANAQAA-----------DGKSSDGHLLQL----------------RF 85 (1962)
Q Consensus 34 lalYqkAL~L~qqGRfeEA~eaY~raLa~-p~lk~a~~~-----------d~~~s~s~lLqL----------------~y 85 (1962)
.++++.|-.+.++|+.++-.++....... ..++.+..+ ...+..+....+ +.
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999988888776431 111111110 000111111111 11
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh----CCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---CCCHH
Q 043158 86 LALKNLATVFLQQGSSHYESALRCYLQAVEI----DTK--DSVVWNQLGTLACSMGLLSISRWAFEQGLLCS---PNNWN 156 (1962)
Q Consensus 86 lAykNLG~lLl~~g~Gr~eEALe~y~rALaL----DP~--DaeaW~nLG~al~~LGr~eeAr~alErALeLd---Pd~~~ 156 (1962)
..=..||.+|++. |++.+|+..+.+.+.- |.. -.+++..-..++..+|++..++.+|.+|.... +-+|.
T Consensus 100 ~l~~kL~~l~~~~--~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 100 SLEARLIALYFDT--ALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 1223789999999 9999999999988873 221 25777788899999999999999999997654 23333
Q ss_pred H----HHHHHHHHH-HcCCHHHHHHHHHHHHH
Q 043158 157 C----MEKLLEVLI-AIGDEVACLSVAELILR 183 (1962)
Q Consensus 157 A----l~nLg~aL~-~LGdyeeAL~~~~rALe 183 (1962)
. ...-|.++. ..++|..|...|-.+++
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 3 344456677 79999999999877764
No 249
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=52.37 E-value=2.7e+02 Score=30.94 Aligned_cols=150 Identities=19% Similarity=0.116 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCC---CCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHH
Q 043158 33 LTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGK---SSDGHLLQLRFLALKNLATVFLQQGSSHYESALRC 109 (1962)
Q Consensus 33 AlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~---~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~ 109 (1962)
+-..|-+++.+-..+++..|+...+.+|...+..++.. +.+ -..++.. +--.+..+|.++.+. |+.+||+.+
T Consensus 62 ~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~-d~~~~~ffvd~~D--kEfFy~l~a~lltq~--g~r~EaI~y 136 (242)
T 3kae_A 62 CTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDV-DARIQEMFVDPGD--EEFFESLLGDLCTLS--GYREEGIGH 136 (242)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCC-CHHHHTTSCCTTC--HHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccc-ccccceeeeccch--HHHHHHHHHHHHHHh--cCHHHhhhH
Confidence 45678899999999999999999999995432111111 000 0000000 123455678888888 899999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHH----------HHHcCChHHHHHHHHHHHhcC----C-------CCHHHH-----HHHHH
Q 043158 110 YLQAVEIDTKDSVVWNQLGTL----------ACSMGLLSISRWAFEQGLLCS----P-------NNWNCM-----EKLLE 163 (1962)
Q Consensus 110 y~rALaLDP~DaeaW~nLG~a----------l~~LGr~eeAr~alErALeLd----P-------d~~~Al-----~nLg~ 163 (1962)
|.+...++|=.+.+-+.+-.- -...|+-..-...+.....+. | ++.|.. .+-+.
T Consensus 137 ~~~Sf~~~~lf~~vEnliyeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~ 216 (242)
T 3kae_A 137 YVRSFGKSFLFSPVENLLLENKVPQKRDKENVRQTGRRGIEEEYVSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAAR 216 (242)
T ss_dssp HHHHHHHCCCHHHHHHHHHTTCCCCCC-----------CHHHHHHHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHH
T ss_pred hhhhcCCccccchHHHHHhhcCCCcccchHHHHhhhhccchhhhhhhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHH
Confidence 999999999766554322110 011122222223333222222 2 333322 34455
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCC
Q 043158 164 VLIAIGDEVACLSVAELILRHWPS 187 (1962)
Q Consensus 164 aL~~LGdyeeAL~~~~rALeLdPd 187 (1962)
-+..+|..++..++|...-+.||.
T Consensus 217 ~yf~lg~~d~s~~lf~~lR~kDP~ 240 (242)
T 3kae_A 217 RYFNLGMNDKSKACFELVRRKDPM 240 (242)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHhcccchhHHHHHHHHHhcCCC
Confidence 677899999999999988888885
No 250
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=49.80 E-value=2.1e+02 Score=31.83 Aligned_cols=93 Identities=11% Similarity=-0.078 Sum_probs=71.3
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--c---------------CCC
Q 043158 91 LATVFLQQGSSHYESALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLL--C---------------SPN 153 (1962)
Q Consensus 91 LG~lLl~~g~Gr~eEALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALe--L---------------dPd 153 (1962)
++.++.-. |++..|+-++. .-+-....+--+.|+..+.++..|+.+++..|+ . ||.
T Consensus 39 ~~I~Lyyn--gEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~ 111 (242)
T 3kae_A 39 MSIVLYLN--GEYTRALFHLH-----KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPG 111 (242)
T ss_dssp HHHHHHHT--TCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTT
T ss_pred hhhhhhhc--chHhHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccc
Confidence 45566665 77777776543 335566777778999999999999999999993 2 233
Q ss_pred CHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 043158 154 NWNC-MEKLLEVLIAIGDEVACLSVAELILRHWPSHSR 190 (1962)
Q Consensus 154 ~~~A-l~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a~ 190 (1962)
+-+- ..-+|.++.++|+.++|+.++.+.....|-.+.
T Consensus 112 DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~ 149 (242)
T 3kae_A 112 DEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSP 149 (242)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccch
Confidence 4444 356778999999999999999999999987653
No 251
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=43.54 E-value=36 Score=46.64 Aligned_cols=89 Identities=12% Similarity=-0.012 Sum_probs=70.7
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH---h--------------------CCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 043158 88 LKNLATVFLQQGSSHYESALRCYLQAVE---I--------------------DTKDSVVWNQLGTLACSMGLLSISRWAF 144 (1962)
Q Consensus 88 ykNLG~lLl~~g~Gr~eEALe~y~rALa---L--------------------DP~DaeaW~nLG~al~~LGr~eeAr~al 144 (1962)
-+-+|.+++.. |++++|.++|.+|.. . ...-+..++++..++.+.|.++.++..-
T Consensus 845 ~yl~g~~~L~~--ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa 922 (1139)
T 4fhn_B 845 VYLKALIYLKS--KEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFS 922 (1139)
T ss_dssp HHHHHHHHHHT--TCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHhc--CCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 46789999999 899999999998721 1 1123467889999999999999999999
Q ss_pred HHHHhcCCCCHH-----HHHHHHHHHHHcCCHHHHHHHH
Q 043158 145 EQGLLCSPNNWN-----CMEKLLEVLIAIGDEVACLSVA 178 (1962)
Q Consensus 145 ErALeLdPd~~~-----Al~nLg~aL~~LGdyeeAL~~~ 178 (1962)
+.||+..+.+.+ .|.++=.....+|+|++|-.++
T Consensus 923 ~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL 961 (1139)
T 4fhn_B 923 LLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVAL 961 (1139)
T ss_dssp HHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHH
T ss_pred HHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 999987754432 4667777888999999997754
No 252
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=36.49 E-value=2.7e+02 Score=34.14 Aligned_cols=98 Identities=10% Similarity=-0.027 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----hCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCCH
Q 043158 85 FLALKNLATVFLQQGSSHYESALRCYLQAVE----IDTK--DSVVWNQLGTLACSMGLLSISRWAFEQGLL---CSPNNW 155 (1962)
Q Consensus 85 ylAykNLG~lLl~~g~Gr~eEALe~y~rALa----LDP~--DaeaW~nLG~al~~LGr~eeAr~alErALe---LdPd~~ 155 (1962)
+....-|+.++.+. |++.+|...+..... .++. -.+++..-.+++...+++..|...+.++.. -.+.++
T Consensus 137 arl~~~La~i~e~~--g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~ 214 (445)
T 4b4t_P 137 ARVTKDLVEIKKEE--GKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYE 214 (445)
T ss_dssp HHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCH
T ss_pred HHHHHHHHHHHHHc--cCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcH
Confidence 44566799999999 999999999887642 1111 157889999999999999999999998742 234444
Q ss_pred HH----HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 043158 156 NC----MEKLLEVLIAIGDEVACLSVAELILRH 184 (1962)
Q Consensus 156 ~A----l~nLg~aL~~LGdyeeAL~~~~rALeL 184 (1962)
.. +...|.++..-++|.+|..+|..+...
T Consensus 215 ~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 215 SLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 33 455667777889999999999888764
No 253
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=35.49 E-value=2.8e+02 Score=38.31 Aligned_cols=96 Identities=8% Similarity=-0.067 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCCHHHHH
Q 043158 86 LALKNLATVFLQQGSSHYESALRCYLQAVEI----DTKDSVVWNQLGTLACSMGLLSISRWAFEQGLL--CSPNNWNCME 159 (1962)
Q Consensus 86 lAykNLG~lLl~~g~Gr~eEALe~y~rALaL----DP~DaeaW~nLG~al~~LGr~eeAr~alErALe--LdPd~~~Al~ 159 (1962)
.+|.-+=..|... |+.++|.+.|.+.-.. -.-|...|+-|-..+++.|++++|+..|++..+ +.|| .-.+.
T Consensus 128 ~TynaLIdglcK~--G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PD-vvTYn 204 (1134)
T 3spa_A 128 QRLLAFFKCCLLT--DQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPD-LLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHH--TCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC-HHHHH
T ss_pred HHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCc-HHHHH
Confidence 4667777788888 8999999999765432 234788999999999999999999999998876 4464 66677
Q ss_pred HHHHHHHHcCC-HHHHHHHHHHHHHh
Q 043158 160 KLLEVLIAIGD-EVACLSVAELILRH 184 (1962)
Q Consensus 160 nLg~aL~~LGd-yeeAL~~~~rALeL 184 (1962)
.+...+.+.|+ .++|...++...+.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 88888888898 47788888776654
No 254
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=31.39 E-value=5.3e+02 Score=27.92 Aligned_cols=145 Identities=11% Similarity=0.039 Sum_probs=91.7
Q ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhcc-----CCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHH
Q 043158 31 SHLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAA-----DGKSSDGHLLQLRFLALKNLATVFLQQGSSHYES 105 (1962)
Q Consensus 31 eeAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~-----d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eE 105 (1962)
.+..+-+..|-.+.-.|..++..++..+.....+.+++.|- +. ...+. -+..+-..|..+--...|+...
T Consensus 5 ~el~kkLmeAK~~ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~-a~C~y----~v~vLd~IGkiFDis~C~NlKr 79 (172)
T 1wy6_A 5 SEIIRKLMDAKKFLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLES-IDCRY----MFQVLDKIGSYFDLDKCQNLKS 79 (172)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHH-CCHHH----HHHHHHHHGGGSCGGGCSCTHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHcCCCCccccceeeeecchh-hchhH----HHHHHHHHhhhcCcHhhhcHHH
Confidence 45667778888899999999999999999886554544430 00 00011 1223334444331111267778
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 043158 106 ALRCYLQAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAELILRH 184 (1962)
Q Consensus 106 ALe~y~rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg~aL~~LGdyeeAL~~~~rALeL 184 (1962)
.+.||.++ ..+.+.....-.++...|+.+.--..+...+.-+|-.|+.+..+|.+|..+|+..+|.+...+|.+.
T Consensus 80 Vi~C~~~~----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 80 VVECGVIN----NTLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHHT----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHh----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 88887653 2233333333356667777776666666656666667888888888888888888888888887765
No 255
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=30.83 E-value=5.8e+02 Score=30.23 Aligned_cols=113 Identities=15% Similarity=0.006 Sum_probs=0.0
Q ss_pred cHHHHHH-HHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 043158 32 HLTQTYH-EGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCY 110 (1962)
Q Consensus 32 eAlalYq-kAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y 110 (1962)
||.+.|. .+..+.++++|++|++++... +..+++. |+..-|.+.-
T Consensus 31 EAhQ~~Rtl~~Ry~~~~~~~eAidlL~~g--------------------------------a~~ll~~--~Q~~sa~DLa 76 (312)
T 2wpv_A 31 EAHQTLRTIANRYVRSKSYEHAIELISQG--------------------------------ALSFLKA--KQGGSGTDLI 76 (312)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHH--------------------------------HHHHHHT--TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHH--------------------------------HHHHHHC--CCcchHHHHH
Q ss_pred HHHHHh-----CCCCHHHHHHHHHHHHHcCChHHHHHHH-HHHH-------hcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 043158 111 LQAVEI-----DTKDSVVWNQLGTLACSMGLLSISRWAF-EQGL-------LCSPNNWNCMEKLLEVLIAIGDEVACLSV 177 (1962)
Q Consensus 111 ~rALaL-----DP~DaeaW~nLG~al~~LGr~eeAr~al-ErAL-------eLdPd~~~Al~nLg~aL~~LGdyeeAL~~ 177 (1962)
.-.++. .|-+.+...++..++..+..-+..+.-| .+|+ ...-.+|..|..+|..+..-|++.+|..+
T Consensus 77 ~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H 156 (312)
T 2wpv_A 77 FYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERY 156 (312)
T ss_dssp HHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHH
Q ss_pred H
Q 043158 178 A 178 (1962)
Q Consensus 178 ~ 178 (1962)
+
T Consensus 157 ~ 157 (312)
T 2wpv_A 157 F 157 (312)
T ss_dssp H
T ss_pred H
No 256
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=29.68 E-value=2.1e+02 Score=34.28 Aligned_cols=51 Identities=12% Similarity=0.031 Sum_probs=34.6
Q ss_pred HHHHHHHhcCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 043158 142 WAFEQGLLCSPNNWNCMEKLL-EVLIAIGDEVACLSVAELILRHWPSHSRAL 192 (1962)
Q Consensus 142 ~alErALeLdPd~~~Al~nLg-~aL~~LGdyeeAL~~~~rALeLdPd~a~Al 192 (1962)
.+|=.-..+.|.|.-.-.+.| .+.+..++|..|....+|.|++.|....+-
T Consensus 184 AAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~~~ 235 (320)
T 3mkr_B 184 AAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPEVAQ 235 (320)
T ss_dssp HHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHHH
Confidence 344444556666544333333 667889999999999999999988754433
No 257
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.63 E-value=4e+02 Score=32.69 Aligned_cols=105 Identities=10% Similarity=-0.016 Sum_probs=74.6
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 043158 32 HLTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYL 111 (1962)
Q Consensus 32 eAlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~ 111 (1962)
.|.-....|-.+...|++.+|...+..+...- . +..+. ..+...+.-...++... +++..|...+.
T Consensus 136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et--------~--~~~~~--~~kve~~l~q~rl~l~~--~d~~~a~~~~~ 201 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEGKIDEAADILCELQVET--------Y--GSMEM--SEKIQFILEQMELSILK--GDYSQATVLSR 201 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--------C--SSSCH--HHHHHHHHHHHHHHHHH--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH--------H--hcccH--HHHHHHHHHHHHHHHHC--CCHHHHHHHHH
Confidence 44455667777888899999999999986410 0 00111 11334555667777777 89999999999
Q ss_pred HHH---HhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 043158 112 QAV---EIDTKDS----VVWNQLGTLACSMGLLSISRWAFEQGLLC 150 (1962)
Q Consensus 112 rAL---aLDP~Da----eaW~nLG~al~~LGr~eeAr~alErALeL 150 (1962)
++. --.+.++ ......|..+...++|.+|-.+|..++..
T Consensus 202 ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 202 KILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 874 2345554 45667889999999999999999988763
No 258
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=27.31 E-value=2.5e+02 Score=33.67 Aligned_cols=135 Identities=12% Similarity=0.045 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHH-hHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 043158 33 LTQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQL-RFLALKNLATVFLQQGSSHYESALRCYL 111 (1962)
Q Consensus 33 AlalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL-~ylAykNLG~lLl~~g~Gr~eEALe~y~ 111 (1962)
....++.|.++...|+|+||+..|+.+|..-++.. . +...-...+-++ .--.-|-+|.-+ +.-+
T Consensus 114 L~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~--v-~~~~e~~e~~eli~icrEYilal~i------------El~R 178 (325)
T 3mv2_A 114 VNEKMNEGYKNFKLNKPDIAIECFREAIYRITLLM--V-DDAEDEKLAHKILETAREYILGLSI------------ELER 178 (325)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCC--B-CSSHHHHHHHHHHHHHHHHHHHHHH------------HHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheee--e-ccHHHHHHHHHHHHHHHHHHHHHHH------------HHHH
Confidence 34568899999999999999999999996321110 0 100000111110 001111222211 1112
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 043158 112 QAVEIDTKDSVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNNWNCMEKLL-EVLIAIGDEVACLSVAELILRHWPSHSR 190 (1962)
Q Consensus 112 rALaLDP~DaeaW~nLG~al~~LGr~eeAr~alErALeLdPd~~~Al~nLg-~aL~~LGdyeeAL~~~~rALeLdPd~a~ 190 (1962)
+++ ..+++. ...-+.+|=.-..+.|.|.-.-.+.| .+.+..++|..|....++.|++.|....
T Consensus 179 r~l--~~~~~k--------------R~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~ 242 (325)
T 3mv2_A 179 RSL--KEGNTV--------------RMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPR 242 (325)
T ss_dssp HTC--CTTCHH--------------HHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHH
T ss_pred Hhc--CcccHH--------------HHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHH
Confidence 222 112210 11123444455566666644333333 6778999999999999999999997765
Q ss_pred HHHHHHHh
Q 043158 191 ALHVKNTI 198 (1962)
Q Consensus 191 Al~lk~~I 198 (1962)
+--.+..+
T Consensus 243 a~qArkil 250 (325)
T 3mv2_A 243 AEQARKIK 250 (325)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 54444443
No 259
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=27.22 E-value=3.3e+02 Score=33.26 Aligned_cols=84 Identities=8% Similarity=-0.092 Sum_probs=58.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHH------HHHHHHHHcCChHHHHHHHHHHHh----cCCC--CHHHHHHHHHHHHHc
Q 043158 101 SHYESALRCYLQAVEIDTKDSVVWN------QLGTLACSMGLLSISRWAFEQGLL----CSPN--NWNCMEKLLEVLIAI 168 (1962)
Q Consensus 101 Gr~eEALe~y~rALaLDP~DaeaW~------nLG~al~~LGr~eeAr~alErALe----LdPd--~~~Al~nLg~aL~~L 168 (1962)
+..+.-++....+++-.-+.--.|. +||.++...|+|.+|...+.+.+. +|.. -.+.+..-..++..+
T Consensus 73 ~~~~~~~~~~~~~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~ 152 (394)
T 3txn_A 73 AGTGIEVQLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHAL 152 (394)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHh
Confidence 4455556666666654444433442 789999999999999999887776 2211 133345555788999
Q ss_pred CCHHHHHHHHHHHHHh
Q 043158 169 GDEVACLSVAELILRH 184 (1962)
Q Consensus 169 GdyeeAL~~~~rALeL 184 (1962)
|++..+.+.+.+|...
T Consensus 153 ~n~~k~k~~l~~a~~~ 168 (394)
T 3txn_A 153 SNLPKARAALTSARTT 168 (394)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhh
Confidence 9999999988877655
No 260
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.98 E-value=77 Score=40.20 Aligned_cols=67 Identities=12% Similarity=-0.049 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 043158 121 SVVWNQLGTLACSMGLLSISRWAFEQGLLCSPNN-------WNCMEKLLEVLIAIGDEVACLSVAELILRHWPSHS 189 (1962)
Q Consensus 121 aeaW~nLG~al~~LGr~eeAr~alErALeLdPd~-------~~Al~nLg~aL~~LGdyeeAL~~~~rALeLdPd~a 189 (1962)
+.+|+.+-+.|...+.++.|.....++. -|.. ..-++-+|.+....++|.+|..++..|+..-|.+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 7888999999999999999999999985 3322 22356789999999999999999999999887664
No 261
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=23.13 E-value=2.3e+02 Score=38.17 Aligned_cols=102 Identities=23% Similarity=0.163 Sum_probs=64.2
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhc-CCcccchhccCCCCCchhhhH------HhHHHHHHHHHHHHHcCCCC
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLK-DPLIANAQAADGKSSDGHLLQ------LRFLALKNLATVFLQQGSSH 102 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa-~p~lk~a~~~d~~~s~s~lLq------L~ylAykNLG~lLl~~g~Gr 102 (1962)
+..+...|-+|..++..|++++|.++|+++-. ...... .. ........++. +....|.+...++.+. +-
T Consensus 837 ~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~-~~-~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~--~a 912 (950)
T 4gq2_M 837 NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTS-QF-AVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEE--SA 912 (950)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCC-SC-GGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHT--TC
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcc-cc-cchhhhhhccCcccccchhHHHHHHHHHHHHhc--CC
Confidence 34566779999999999999999999998753 110000 00 00000000100 1224555777788877 88
Q ss_pred HHHHHHHHHHHHHh-CCCCHH----HHHHHHHHHHHcC
Q 043158 103 YESALRCYLQAVEI-DTKDSV----VWNQLGTLACSMG 135 (1962)
Q Consensus 103 ~eEALe~y~rALaL-DP~Dae----aW~nLG~al~~LG 135 (1962)
++-+++.-+.|++. +++|.. +|.++=.++.++|
T Consensus 913 ~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 913 YIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 99999999999964 566665 6666666665554
No 262
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=22.37 E-value=71 Score=30.97 Aligned_cols=32 Identities=6% Similarity=-0.008 Sum_probs=28.9
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLK 61 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa 61 (1962)
.+.|..+..+|...-+.|++++|..+|.++++
T Consensus 16 ~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 16 EEMARKYAINAVKADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 35788899999999999999999999999987
No 263
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=22.15 E-value=4e+02 Score=36.78 Aligned_cols=106 Identities=11% Similarity=-0.029 Sum_probs=74.8
Q ss_pred cccHHHHHHHHH-HHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHH
Q 043158 30 ESHLTQTYHEGL-LKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALR 108 (1962)
Q Consensus 30 eeeAlalYqkAL-~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe 108 (1962)
...-...|+.-+ .+.+.|+.++|.++|++.-... .....++..+|+-+-..|... |+.++|++
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~--------------~kG~~PdvvTYNtLI~Glck~--G~~~eA~~ 186 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQR--------------QKRKLLTLDMYNAVMLGWARQ--GAFKELVY 186 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSH--------------HHHTTCCHHHHHHHHHHHHHH--TCHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--------------hcCCCCCHhHHHHHHHHHHhC--CCHHHHHH
Confidence 333344455444 3677899999999997754320 000111346788888888888 89999999
Q ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhcC
Q 043158 109 CYLQAVEID-TKDSVVWNQLGTLACSMGLL-SISRWAFEQGLLCS 151 (1962)
Q Consensus 109 ~y~rALaLD-P~DaeaW~nLG~al~~LGr~-eeAr~alErALeLd 151 (1962)
.|.+-.+.. .-|...+..+=.++++.|+. ++|...|++..+..
T Consensus 187 Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 187 VLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 999987763 22677788888899999985 78889999887643
No 264
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=22.10 E-value=72 Score=30.77 Aligned_cols=31 Identities=3% Similarity=-0.044 Sum_probs=28.5
Q ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Q 043158 31 SHLTQTYHEGLLKLQSKEYDKAQELLESVLK 61 (1962)
Q Consensus 31 eeAlalYqkAL~L~qqGRfeEA~eaY~raLa 61 (1962)
+.|..+..+|...-+.|++++|+.+|.++++
T Consensus 9 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 9 DMARKYAILAVKADKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4678899999999999999999999999987
No 265
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=21.63 E-value=60 Score=31.96 Aligned_cols=34 Identities=6% Similarity=0.005 Sum_probs=30.2
Q ss_pred CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC
Q 043158 29 PESHLTQTYHEGLLKLQSKEYDKAQELLESVLKD 62 (1962)
Q Consensus 29 ~eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa~ 62 (1962)
..+.|..+..+|...-..|+|++|+.+|..+++.
T Consensus 11 ~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~ 44 (93)
T 1wfd_A 11 DSTAAVAVLKRAVELDAESRYQQALVCYQEGIDM 44 (93)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3567889999999999999999999999999873
No 266
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=20.87 E-value=1.2e+02 Score=32.22 Aligned_cols=82 Identities=20% Similarity=0.267 Sum_probs=56.2
Q ss_pred HHHHHHHHHhhhhccccccCCCCCCcHHHHHHHHHHHHhhcCcch-hccCCCCCCCcccchhhHhhHHHHHHHHHhhccc
Q 043158 1594 LGRYIRALLSSMHHSGITYSSAGSSSELVLEKIFALFMEQGNLWP-EICGAPEIMSPEISESSLYGYLHEHIVSLESKVK 1672 (1962)
Q Consensus 1594 ~~l~i~~l~~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~w~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1672 (1962)
+..|.++....+.+++.-. .++-+|.+|-+||=+.++-- -|..-|+..+....+ +..+ +..|. +.-
T Consensus 33 l~~ylrta~~llr~A~~y~------~egd~e~AYily~R~~~L~~e~IpkHpdy~~~~~~~---~~~~---l~~l~-~~~ 99 (146)
T 2xze_A 33 PRRYFRSGVEIIRMASIYS------EEGNIEHAFILYNKYITLFIEKLPKHRDYKSAVIPE---KKDT---VKKLK-EIA 99 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHH------HHTCHHHHHHHHHHHHHHHHTTGGGSTTTTTCCCTT---HHHH---HHHHH-HTH
T ss_pred HHHHHHHHHHHHHHHHHHH------HCCCHHHHHHHHHHHHHHHHHHcccCccchhhhhHH---HHHH---HHHHH-HHh
Confidence 7777777777777765332 33457999999999988885 677888887754444 3333 33343 234
Q ss_pred hhhHHHHHHHHHhhhC
Q 043158 1673 LETLEAINEKIRKRFK 1688 (1962)
Q Consensus 1673 ~~~~~~~~~~~~~~~~ 1688 (1962)
+++||.+-..|.+|+.
T Consensus 100 ~~~lE~LK~~L~~rY~ 115 (146)
T 2xze_A 100 FPKAEELKAELLKRYT 115 (146)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8889988888887764
No 267
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.79 E-value=1.4e+02 Score=36.34 Aligned_cols=100 Identities=11% Similarity=0.002 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccchhccCCCCCchhhhHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 043158 34 TQTYHEGLLKLQSKEYDKAQELLESVLKDPLIANAQAADGKSSDGHLLQLRFLALKNLATVFLQQGSSHYESALRCYLQA 113 (1962)
Q Consensus 34 lalYqkAL~L~qqGRfeEA~eaY~raLa~p~lk~a~~~d~~~s~s~lLqL~ylAykNLG~lLl~~g~Gr~eEALe~y~rA 113 (1962)
...+..|-.+.+.|++++|.++|.++...-. .. .+ ....+.+.-.+.... +++..|...+.+|
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~-------~~----~~----kid~~l~~irl~l~~--~d~~~~~~~~~ka 194 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAI-------ST----GA----KIDVMLTIARLGFFY--NDQLYVKEKLEAV 194 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHT-------CC----CS----HHHHHHHHHHHHHHH--TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-------Ch----HH----HHHHHHHHHHHHHHh--ccHHHHHHHHHHH
Confidence 3456788888899999999999999875210 00 01 234566666667777 8999999999999
Q ss_pred HHh--CCCCHHH----HHHHHHHHHHcCChHHHHHHHHHHHhc
Q 043158 114 VEI--DTKDSVV----WNQLGTLACSMGLLSISRWAFEQGLLC 150 (1962)
Q Consensus 114 LaL--DP~Daea----W~nLG~al~~LGr~eeAr~alErALeL 150 (1962)
-.+ ...|++. ...-|.++...++|..|...|-.++.-
T Consensus 195 ~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 195 NSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 765 3344443 345578888999999999999887654
No 268
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=20.14 E-value=81 Score=30.73 Aligned_cols=32 Identities=6% Similarity=0.039 Sum_probs=28.8
Q ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Q 043158 30 ESHLTQTYHEGLLKLQSKEYDKAQELLESVLK 61 (1962)
Q Consensus 30 eeeAlalYqkAL~L~qqGRfeEA~eaY~raLa 61 (1962)
...|..+..+|+..-..|++++|+.+|.++++
T Consensus 13 ~~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 13 STAAATVLKRAVELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44678899999999999999999999999986
Done!