BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043159
         (201 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3F7P|A Chain A, Crystal Structure Of A Complex Between Integrin Beta4 And
           Plectin
 pdb|3F7P|B Chain B, Crystal Structure Of A Complex Between Integrin Beta4 And
           Plectin
          Length = 296

 Score = 28.5 bits (62), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 6/76 (7%)

Query: 72  DEAEEQQLRIIDERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNH 131
           D AE   +RI DER + +  +  +   +  ++ QRH+ +L+  +     + HNLI  L  
Sbjct: 57  DPAERAVIRIADERDRVQKKTFTKWVNKHLIKAQRHISDLYEDL----RDGHNLISLLEV 112

Query: 132 VSESHDRVLQENARLR 147
           +  S D + +E  R+R
Sbjct: 113 L--SGDSLPREKGRMR 126


>pdb|1VE3|A Chain A, Crystal Structure Of Ph0226 Protein From Pyrococcus
           Horikoshii Ot3
 pdb|1VE3|B Chain B, Crystal Structure Of Ph0226 Protein From Pyrococcus
           Horikoshii Ot3
          Length = 227

 Score = 28.1 bits (61), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 3/82 (3%)

Query: 85  RKQRRMISNRESARRSRMRKQRHL---DELWSHVVRLRTENHNLIDKLNHVSESHDRVLQ 141
           RK R    +RES     +   R L   D+ + +V+ + +  H    +LN V +   RVL+
Sbjct: 74  RKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLK 133

Query: 142 ENARLREEASDLRQMLTELQLS 163
            + +     +DLR++L  L+ S
Sbjct: 134 PSGKFIXYFTDLRELLPRLKES 155


>pdb|2PG6|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
 pdb|2PG6|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
 pdb|2PG6|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
 pdb|2PG6|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
          Length = 476

 Score = 27.3 bits (59), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 14/43 (32%), Positives = 24/43 (55%)

Query: 8   GIQYYLAPENAAQLPANLGMMQANIQPNFHLNRLLANLPNSLI 50
           GI+  +  E    + A  G   ANI P F L+R ++N+ +S++
Sbjct: 122 GIEERIQEEAGFLIDALRGTGGANIDPTFFLSRTVSNVISSIV 164


>pdb|2PG7|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
 pdb|2PG7|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
 pdb|2PG7|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
 pdb|2PG7|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
          Length = 476

 Score = 27.3 bits (59), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 14/43 (32%), Positives = 24/43 (55%)

Query: 8   GIQYYLAPENAAQLPANLGMMQANIQPNFHLNRLLANLPNSLI 50
           GI+  +  E    + A  G   ANI P F L+R ++N+ +S++
Sbjct: 122 GIEERIQEEAGFLIDALRGTGGANIDPTFFLSRTVSNVISSIV 164


>pdb|2PG5|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 N297q
 pdb|2PG5|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 N297q
 pdb|2PG5|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 N297q
 pdb|2PG5|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 N297q
          Length = 476

 Score = 26.9 bits (58), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 14/43 (32%), Positives = 24/43 (55%)

Query: 8   GIQYYLAPENAAQLPANLGMMQANIQPNFHLNRLLANLPNSLI 50
           GI+  +  E    + A  G   ANI P F L+R ++N+ +S++
Sbjct: 122 GIEERIQEEAGFLIDALRGTGGANIDPTFFLSRTVSNVISSIV 164


>pdb|1Z10|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With
           Coumarin Bound
 pdb|1Z10|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With
           Coumarin Bound
 pdb|1Z10|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With
           Coumarin Bound
 pdb|1Z10|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With
           Coumarin Bound
 pdb|1Z11|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With
           Methoxsalen Bound
 pdb|1Z11|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With
           Methoxsalen Bound
 pdb|1Z11|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With
           Methoxsalen Bound
 pdb|1Z11|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With
           Methoxsalen Bound
 pdb|2FDU|A Chain A, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
           (Pyridin-3-Yl)furan-2-Yl)methanamine Bound
 pdb|2FDU|B Chain B, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
           (Pyridin-3-Yl)furan-2-Yl)methanamine Bound
 pdb|2FDU|C Chain C, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
           (Pyridin-3-Yl)furan-2-Yl)methanamine Bound
 pdb|2FDU|D Chain D, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
           (Pyridin-3-Yl)furan-2-Yl)methanamine Bound
 pdb|2FDV|A Chain A, Microsomal P450 2a6 With The Inhibitor
           N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
 pdb|2FDV|B Chain B, Microsomal P450 2a6 With The Inhibitor
           N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
 pdb|2FDV|C Chain C, Microsomal P450 2a6 With The Inhibitor
           N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
 pdb|2FDV|D Chain D, Microsomal P450 2a6 With The Inhibitor
           N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
 pdb|2FDW|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With The
           Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
 pdb|2FDW|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With The
           Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
 pdb|2FDW|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With The
           Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
 pdb|2FDW|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With The
           Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
 pdb|2FDY|A Chain A, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
 pdb|2FDY|B Chain B, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
 pdb|2FDY|C Chain C, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
 pdb|2FDY|D Chain D, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
 pdb|3T3R|A Chain A, Human Cytochrome P450 2a6 In Complex With Pilocarpine
 pdb|3T3R|B Chain B, Human Cytochrome P450 2a6 In Complex With Pilocarpine
 pdb|3T3R|C Chain C, Human Cytochrome P450 2a6 In Complex With Pilocarpine
 pdb|3T3R|D Chain D, Human Cytochrome P450 2a6 In Complex With Pilocarpine
 pdb|4EJJ|A Chain A, Human Cytochrome P450 2a6 In Complex With Nicotine
 pdb|4EJJ|B Chain B, Human Cytochrome P450 2a6 In Complex With Nicotine
 pdb|4EJJ|C Chain C, Human Cytochrome P450 2a6 In Complex With Nicotine
 pdb|4EJJ|D Chain D, Human Cytochrome P450 2a6 In Complex With Nicotine
          Length = 476

 Score = 26.9 bits (58), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 14/43 (32%), Positives = 24/43 (55%)

Query: 8   GIQYYLAPENAAQLPANLGMMQANIQPNFHLNRLLANLPNSLI 50
           GI+  +  E    + A  G   ANI P F L+R ++N+ +S++
Sbjct: 122 GIEERIQEEAGFLIDALRGTGGANIDPTFFLSRTVSNVISSIV 164


>pdb|3EBS|A Chain A, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
           With Phenacetin
 pdb|3EBS|B Chain B, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
           With Phenacetin
 pdb|3EBS|C Chain C, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
           With Phenacetin
 pdb|3EBS|D Chain D, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
           With Phenacetin
 pdb|3T3Q|A Chain A, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
           WITH Pilocarpine
 pdb|3T3Q|B Chain B, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
           WITH Pilocarpine
 pdb|3T3Q|C Chain C, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
           WITH Pilocarpine
 pdb|3T3Q|D Chain D, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
           WITH Pilocarpine
          Length = 476

 Score = 26.9 bits (58), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 14/43 (32%), Positives = 24/43 (55%)

Query: 8   GIQYYLAPENAAQLPANLGMMQANIQPNFHLNRLLANLPNSLI 50
           GI+  +  E    + A  G   ANI P F L+R ++N+ +S++
Sbjct: 122 GIEERIQEEAGFLIDALRGTGGANIDPTFFLSRTVSNVISSIV 164


>pdb|2P85|A Chain A, Structure Of Human Lung Cytochrome P450 2a13 With Indole
           Bound In Two Alternate Conformations
 pdb|2P85|B Chain B, Structure Of Human Lung Cytochrome P450 2a13 With Indole
           Bound In Two Alternate Conformations
 pdb|2P85|C Chain C, Structure Of Human Lung Cytochrome P450 2a13 With Indole
           Bound In Two Alternate Conformations
 pdb|2P85|D Chain D, Structure Of Human Lung Cytochrome P450 2a13 With Indole
           Bound In Two Alternate Conformations
 pdb|2P85|E Chain E, Structure Of Human Lung Cytochrome P450 2a13 With Indole
           Bound In Two Alternate Conformations
 pdb|2P85|F Chain F, Structure Of Human Lung Cytochrome P450 2a13 With Indole
           Bound In Two Alternate Conformations
 pdb|3T3S|A Chain A, Human Cytochrome P450 2a13 In Complex With Pilocarpine
 pdb|3T3S|B Chain B, Human Cytochrome P450 2a13 In Complex With Pilocarpine
 pdb|3T3S|C Chain C, Human Cytochrome P450 2a13 In Complex With Pilocarpine
 pdb|3T3S|D Chain D, Human Cytochrome P450 2a13 In Complex With Pilocarpine
 pdb|3T3S|E Chain E, Human Cytochrome P450 2a13 In Complex With Pilocarpine
 pdb|3T3S|F Chain F, Human Cytochrome P450 2a13 In Complex With Pilocarpine
 pdb|3T3S|G Chain G, Human Cytochrome P450 2a13 In Complex With Pilocarpine
 pdb|3T3S|H Chain H, Human Cytochrome P450 2a13 In Complex With Pilocarpine
 pdb|4EJG|A Chain A, Human Cytochrome P450 2a13 In Complex With Nicotine
 pdb|4EJG|B Chain B, Human Cytochrome P450 2a13 In Complex With Nicotine
 pdb|4EJG|C Chain C, Human Cytochrome P450 2a13 In Complex With Nicotine
 pdb|4EJG|D Chain D, Human Cytochrome P450 2a13 In Complex With Nicotine
 pdb|4EJG|E Chain E, Human Cytochrome P450 2a13 In Complex With Nicotine
 pdb|4EJG|F Chain F, Human Cytochrome P450 2a13 In Complex With Nicotine
 pdb|4EJG|G Chain G, Human Cytochrome P450 2a13 In Complex With Nicotine
 pdb|4EJG|H Chain H, Human Cytochrome P450 2a13 In Complex With Nicotine
 pdb|4EJH|A Chain A, Human Cytochrome P450 2a13 In Complex With
           4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
 pdb|4EJH|B Chain B, Human Cytochrome P450 2a13 In Complex With
           4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
 pdb|4EJH|C Chain C, Human Cytochrome P450 2a13 In Complex With
           4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
 pdb|4EJH|D Chain D, Human Cytochrome P450 2a13 In Complex With
           4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
 pdb|4EJH|E Chain E, Human Cytochrome P450 2a13 In Complex With
           4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
 pdb|4EJH|F Chain F, Human Cytochrome P450 2a13 In Complex With
           4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
 pdb|4EJH|G Chain G, Human Cytochrome P450 2a13 In Complex With
           4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
 pdb|4EJH|H Chain H, Human Cytochrome P450 2a13 In Complex With
           4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
 pdb|4EJI|A Chain A, Human Cytochrome P450 2a13 In Complex With Two Molecules
           Of 4- (Methylnitrosamino)-1-(3-Puridyl)-1-Butanone
          Length = 476

 Score = 26.6 bits (57), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 14/43 (32%), Positives = 24/43 (55%)

Query: 8   GIQYYLAPENAAQLPANLGMMQANIQPNFHLNRLLANLPNSLI 50
           GI+  +  E    + A  G   ANI P F L+R ++N+ +S++
Sbjct: 122 GIEERIQEEAGFLIDALRGTHGANIDPTFFLSRTVSNVISSIV 164


>pdb|2A2D|A Chain A, X-Ray Structure Of Human N-Acetyl Galactosamine Kinase
           Complexed With Mn-Amppnp And N-Acetyl Glactosamine
 pdb|2A2C|A Chain A, X-Ray Structure Of Human N-Acetyl Galactosamine Kinase
           Complexed With Mg-Adp And N-Acetyl Galactosamine 1-
           Phosphate
          Length = 478

 Score = 26.6 bits (57), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 6/75 (8%)

Query: 108 LDELWSHVVRLRTEN---HNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQLSS 164
           L+EL + ++   T++     L  +  HV     RVLQ      E   ++ Q+L EL   S
Sbjct: 328 LEELRTQILSPNTQDVLIFKLYQRAKHVYSEAARVLQFKKICEEAPENMVQLLGELMNQS 387

Query: 165 PYTNASLRDLGEVPC 179
              + S RD+ E  C
Sbjct: 388 ---HMSCRDMYECSC 399


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.129    0.362 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,768,275
Number of Sequences: 62578
Number of extensions: 152830
Number of successful extensions: 505
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 482
Number of HSP's gapped (non-prelim): 33
length of query: 201
length of database: 14,973,337
effective HSP length: 94
effective length of query: 107
effective length of database: 9,091,005
effective search space: 972737535
effective search space used: 972737535
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)