Query 043159
Match_columns 201
No_of_seqs 168 out of 683
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 13:29:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043159.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043159hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00338 BRLZ basic region l 99.4 9.3E-13 2E-17 93.0 9.4 62 82-143 2-63 (65)
2 KOG4005 Transcription factor X 99.4 1.5E-12 3.3E-17 114.7 11.5 82 80-161 64-145 (292)
3 PF00170 bZIP_1: bZIP transcri 99.4 2.6E-12 5.7E-17 90.6 9.3 62 83-144 3-64 (64)
4 KOG4343 bZIP transcription fac 99.3 7.9E-12 1.7E-16 119.7 7.7 70 81-150 277-346 (655)
5 PF07716 bZIP_2: Basic region 99.2 2.7E-10 5.7E-15 78.3 8.7 52 82-134 2-53 (54)
6 KOG0709 CREB/ATF family transc 99.0 9.8E-10 2.1E-14 103.8 6.7 72 83-161 249-320 (472)
7 KOG3584 cAMP response element 98.9 2.5E-09 5.3E-14 96.7 8.1 53 83-135 289-341 (348)
8 PF03131 bZIP_Maf: bZIP Maf tr 98.2 2.6E-08 5.7E-13 75.2 -6.2 56 81-136 26-81 (92)
9 KOG0837 Transcriptional activa 97.9 3.4E-05 7.4E-10 69.1 7.8 47 87-133 208-254 (279)
10 KOG4571 Activating transcripti 97.9 6.4E-05 1.4E-09 68.1 9.1 55 81-135 222-277 (294)
11 KOG4196 bZIP transcription fac 97.6 0.0008 1.7E-08 54.9 10.3 68 82-163 50-117 (135)
12 KOG3119 Basic region leucine z 97.4 0.00077 1.7E-08 60.0 8.3 51 83-133 192-242 (269)
13 PF06156 DUF972: Protein of un 96.5 0.018 3.9E-07 45.2 8.3 53 110-162 5-57 (107)
14 PF06005 DUF904: Protein of un 96.5 0.036 7.8E-07 40.7 9.3 54 107-160 5-65 (72)
15 TIGR02449 conserved hypothetic 96.5 0.03 6.5E-07 40.7 8.6 52 109-160 3-54 (65)
16 KOG3863 bZIP transcription fac 96.4 0.0072 1.6E-07 59.6 6.6 69 85-160 490-558 (604)
17 PF06156 DUF972: Protein of un 96.3 0.028 6E-07 44.2 7.9 50 106-155 8-57 (107)
18 TIGR02449 conserved hypothetic 96.2 0.059 1.3E-06 39.2 8.7 56 106-161 7-62 (65)
19 PF06005 DUF904: Protein of un 96.2 0.078 1.7E-06 39.0 9.3 53 106-158 18-70 (72)
20 PRK13169 DNA replication intia 96.2 0.039 8.5E-07 43.7 8.3 51 110-160 5-55 (110)
21 PRK13169 DNA replication intia 96.1 0.038 8.3E-07 43.8 7.8 50 106-155 8-57 (110)
22 COG3074 Uncharacterized protei 96.0 0.067 1.4E-06 39.9 8.1 54 108-161 20-73 (79)
23 PRK15422 septal ring assembly 95.9 0.066 1.4E-06 40.4 8.2 53 109-161 21-73 (79)
24 PF02183 HALZ: Homeobox associ 95.9 0.036 7.8E-07 37.4 5.9 42 117-158 2-43 (45)
25 COG4467 Regulator of replicati 95.3 0.099 2.1E-06 41.7 7.5 50 110-159 5-54 (114)
26 PF14197 Cep57_CLD_2: Centroso 95.2 0.26 5.5E-06 35.9 8.9 56 105-160 11-66 (69)
27 PF07989 Microtub_assoc: Micro 94.9 0.26 5.6E-06 36.4 8.2 54 108-161 2-63 (75)
28 PF08614 ATG16: Autophagy prot 94.9 0.89 1.9E-05 38.2 12.5 72 84-155 115-186 (194)
29 PF07888 CALCOCO1: Calcium bin 94.8 1 2.2E-05 44.5 14.4 77 85-161 150-226 (546)
30 TIGR02894 DNA_bind_RsfA transc 94.7 0.26 5.5E-06 41.6 8.8 47 114-160 98-144 (161)
31 PRK10884 SH3 domain-containing 94.7 0.37 8E-06 41.7 10.0 43 106-148 125-167 (206)
32 PRK13729 conjugal transfer pil 94.3 0.15 3.2E-06 49.4 7.2 54 105-158 75-128 (475)
33 PF11559 ADIP: Afadin- and alp 93.7 2.4 5.3E-05 34.0 12.2 77 85-161 45-121 (151)
34 PF14662 CCDC155: Coiled-coil 93.6 0.44 9.5E-06 41.3 8.3 54 108-161 3-56 (193)
35 KOG4005 Transcription factor X 93.4 0.71 1.5E-05 41.7 9.4 75 81-157 69-148 (292)
36 PRK10884 SH3 domain-containing 93.2 2.3 5E-05 36.8 12.1 52 106-157 118-169 (206)
37 PF06785 UPF0242: Uncharacteri 93.2 0.65 1.4E-05 43.7 9.2 63 99-161 120-182 (401)
38 PRK02119 hypothetical protein; 93.2 2 4.4E-05 31.4 10.0 50 106-162 9-58 (73)
39 PRK15422 septal ring assembly 93.2 0.88 1.9E-05 34.4 8.2 55 107-161 5-59 (79)
40 PRK04406 hypothetical protein; 93.1 2.3 4.9E-05 31.4 10.3 49 107-162 12-60 (75)
41 COG4026 Uncharacterized protei 93.1 0.89 1.9E-05 40.9 9.5 56 105-160 141-196 (290)
42 PF10224 DUF2205: Predicted co 92.9 0.93 2E-05 34.1 8.1 45 109-153 19-63 (80)
43 PF09304 Cortex-I_coil: Cortex 92.8 1.6 3.5E-05 34.7 9.6 45 92-136 23-67 (107)
44 COG4467 Regulator of replicati 92.8 0.55 1.2E-05 37.6 7.0 47 106-152 8-54 (114)
45 PRK04325 hypothetical protein; 92.5 2.5 5.4E-05 31.0 9.7 49 107-162 10-58 (74)
46 TIGR00219 mreC rod shape-deter 92.4 0.36 7.9E-06 43.3 6.2 36 113-148 66-105 (283)
47 smart00340 HALZ homeobox assoc 92.4 0.35 7.5E-06 32.7 4.6 28 128-155 6-33 (44)
48 PF11559 ADIP: Afadin- and alp 92.2 2.3 4.9E-05 34.1 10.1 58 102-159 69-126 (151)
49 PF09738 DUF2051: Double stran 92.0 9.7 0.00021 35.0 15.8 86 78-163 85-176 (302)
50 PF04102 SlyX: SlyX; InterPro 91.9 1.1 2.4E-05 32.2 7.2 49 106-161 4-52 (69)
51 PF09726 Macoilin: Transmembra 91.9 2.8 6.1E-05 42.4 12.4 53 109-161 541-600 (697)
52 PRK00846 hypothetical protein; 91.8 3.4 7.4E-05 30.9 9.8 51 106-163 13-63 (77)
53 PF02183 HALZ: Homeobox associ 91.5 0.77 1.7E-05 30.9 5.6 39 124-162 2-40 (45)
54 PRK02793 phi X174 lysis protei 91.3 4.4 9.5E-05 29.6 9.8 51 106-163 8-58 (72)
55 PF13747 DUF4164: Domain of un 91.2 5.2 0.00011 30.3 11.5 75 84-158 10-84 (89)
56 PF07106 TBPIP: Tat binding pr 91.2 1.7 3.8E-05 35.5 8.6 55 108-162 81-137 (169)
57 PF15294 Leu_zip: Leucine zipp 90.9 1.2 2.6E-05 40.5 8.0 51 111-161 130-180 (278)
58 PF11932 DUF3450: Protein of u 90.9 3.9 8.6E-05 35.5 10.9 59 99-157 49-107 (251)
59 PF04880 NUDE_C: NUDE protein, 90.8 0.43 9.3E-06 40.3 4.7 46 108-157 2-47 (166)
60 PF12808 Mto2_bdg: Micro-tubul 90.7 0.82 1.8E-05 31.9 5.2 49 103-154 1-49 (52)
61 PF12325 TMF_TATA_bd: TATA ele 90.7 2.9 6.2E-05 33.5 9.1 20 139-158 94-113 (120)
62 TIGR03752 conj_TIGR03752 integ 90.5 1.6 3.5E-05 42.4 8.8 53 108-160 75-135 (472)
63 PF07106 TBPIP: Tat binding pr 90.2 1.8 4E-05 35.4 7.9 52 104-155 84-137 (169)
64 PF14197 Cep57_CLD_2: Centroso 90.1 2.2 4.8E-05 31.0 7.3 49 107-155 20-68 (69)
65 PRK11637 AmiB activator; Provi 90.0 7.3 0.00016 36.3 12.6 65 94-158 63-127 (428)
66 PRK00295 hypothetical protein; 90.0 5.7 0.00012 28.7 9.6 49 106-161 5-53 (68)
67 PF12325 TMF_TATA_bd: TATA ele 89.5 4.9 0.00011 32.2 9.5 14 144-157 71-84 (120)
68 PF10186 Atg14: UV radiation r 89.1 13 0.00028 31.9 12.6 15 109-123 87-101 (302)
69 PRK02119 hypothetical protein; 88.6 3.6 7.9E-05 30.1 7.6 46 108-160 4-49 (73)
70 PRK13922 rod shape-determining 88.6 4 8.7E-05 35.7 9.2 34 116-149 72-108 (276)
71 PF08647 BRE1: BRE1 E3 ubiquit 88.6 9 0.0002 29.1 11.2 74 88-161 6-79 (96)
72 PF08614 ATG16: Autophagy prot 88.5 9.8 0.00021 31.9 11.2 62 100-161 124-185 (194)
73 PRK11637 AmiB activator; Provi 88.1 12 0.00026 34.9 12.6 59 103-161 65-123 (428)
74 PF11932 DUF3450: Protein of u 88.0 11 0.00024 32.7 11.6 54 107-160 43-96 (251)
75 PF11180 DUF2968: Protein of u 87.8 18 0.00038 31.5 12.7 79 85-163 105-183 (192)
76 PF12711 Kinesin-relat_1: Kine 86.9 5.4 0.00012 30.5 7.9 42 116-157 20-67 (86)
77 PF01166 TSC22: TSC-22/dip/bun 86.9 1 2.3E-05 32.3 3.7 30 120-149 14-43 (59)
78 PF15058 Speriolin_N: Sperioli 86.8 1.7 3.6E-05 37.9 5.6 38 108-153 7-44 (200)
79 KOG1414 Transcriptional activa 86.8 0.03 6.5E-07 52.3 -5.4 55 80-134 149-207 (395)
80 KOG0977 Nuclear envelope prote 86.7 4.7 0.0001 39.9 9.3 62 96-157 131-192 (546)
81 PF10224 DUF2205: Predicted co 86.6 6.5 0.00014 29.6 8.0 58 105-162 7-65 (80)
82 PF15070 GOLGA2L5: Putative go 86.4 7.2 0.00016 39.0 10.6 72 90-161 106-180 (617)
83 COG3883 Uncharacterized protei 86.4 6.4 0.00014 35.7 9.4 56 105-163 58-113 (265)
84 PRK09039 hypothetical protein; 86.2 5 0.00011 37.0 8.8 50 111-160 135-184 (343)
85 PF12329 TMF_DNA_bd: TATA elem 86.1 11 0.00024 27.5 9.0 58 104-161 10-67 (74)
86 PF14662 CCDC155: Coiled-coil 86.1 5.3 0.00011 34.7 8.3 51 108-158 10-60 (193)
87 PRK02793 phi X174 lysis protei 85.8 6.6 0.00014 28.6 7.6 44 110-160 5-48 (72)
88 PF04102 SlyX: SlyX; InterPro 85.7 6.8 0.00015 28.1 7.5 44 111-161 2-45 (69)
89 PRK09039 hypothetical protein; 85.7 11 0.00024 34.8 10.7 21 110-130 141-161 (343)
90 PRK00888 ftsB cell division pr 85.6 3.1 6.8E-05 32.3 6.2 30 104-133 32-61 (105)
91 smart00338 BRLZ basic region l 85.6 4.4 9.5E-05 28.2 6.4 30 131-160 30-59 (65)
92 PRK00295 hypothetical protein; 85.6 9 0.00019 27.6 8.1 19 111-129 3-21 (68)
93 PHA02562 46 endonuclease subun 85.5 15 0.00033 34.7 11.9 44 106-149 358-401 (562)
94 PF04156 IncA: IncA protein; 85.4 19 0.00041 29.5 13.1 73 89-161 113-185 (191)
95 PF08172 CASP_C: CASP C termin 85.4 4.2 9.1E-05 36.2 7.6 39 105-150 92-130 (248)
96 PF04849 HAP1_N: HAP1 N-termin 85.3 6.2 0.00014 36.4 8.9 50 111-160 246-295 (306)
97 KOG1962 B-cell receptor-associ 85.1 3.7 8E-05 36.2 7.0 16 133-148 192-207 (216)
98 KOG1853 LIS1-interacting prote 85.1 29 0.00063 32.0 12.8 55 107-161 53-118 (333)
99 PF04111 APG6: Autophagy prote 85.1 27 0.00058 31.9 12.8 77 90-166 62-138 (314)
100 PRK00888 ftsB cell division pr 84.8 2.7 5.9E-05 32.6 5.5 31 124-154 31-61 (105)
101 COG3074 Uncharacterized protei 84.6 11 0.00024 28.3 8.2 53 108-160 6-58 (79)
102 PF05278 PEARLI-4: Arabidopsis 84.5 31 0.00068 31.4 12.8 60 105-164 206-265 (269)
103 PF07407 Seadorna_VP6: Seadorn 84.4 2 4.2E-05 40.6 5.2 32 114-147 33-64 (420)
104 KOG3119 Basic region leucine z 84.3 7.8 0.00017 34.6 8.9 32 130-161 218-249 (269)
105 KOG1318 Helix loop helix trans 84.2 35 0.00077 32.8 13.6 31 83-113 227-257 (411)
106 PF12718 Tropomyosin_1: Tropom 84.1 10 0.00023 30.8 8.8 35 107-141 15-49 (143)
107 PF05266 DUF724: Protein of un 84.0 23 0.0005 30.3 11.3 79 83-161 87-179 (190)
108 PF04728 LPP: Lipoprotein leuc 83.9 13 0.00028 26.4 8.4 47 106-152 3-49 (56)
109 PF15035 Rootletin: Ciliary ro 83.9 9 0.0002 32.6 8.7 52 107-158 68-119 (182)
110 PF09755 DUF2046: Uncharacteri 83.8 5.7 0.00012 36.8 7.9 47 109-155 23-69 (310)
111 KOG0250 DNA repair protein RAD 83.7 17 0.00037 38.7 12.1 67 95-161 368-435 (1074)
112 PRK00736 hypothetical protein; 83.6 10 0.00022 27.3 7.7 50 106-162 5-54 (68)
113 PRK04325 hypothetical protein; 83.5 10 0.00022 27.7 7.8 47 107-160 3-49 (74)
114 PF00170 bZIP_1: bZIP transcri 83.4 7.7 0.00017 26.9 6.8 30 131-160 30-59 (64)
115 PF10473 CENP-F_leu_zip: Leuci 83.4 24 0.00052 29.1 12.6 73 81-160 27-99 (140)
116 COG4026 Uncharacterized protei 83.3 9.7 0.00021 34.4 8.9 16 115-130 144-159 (290)
117 PF04899 MbeD_MobD: MbeD/MobD 83.1 16 0.00035 26.8 9.1 47 116-162 17-63 (70)
118 PF10805 DUF2730: Protein of u 82.9 12 0.00026 28.9 8.4 12 107-118 50-61 (106)
119 KOG1962 B-cell receptor-associ 82.9 18 0.0004 31.9 10.4 53 106-158 158-210 (216)
120 PF04977 DivIC: Septum formati 82.8 8 0.00017 27.0 6.8 29 104-132 22-50 (80)
121 COG1579 Zn-ribbon protein, pos 82.8 35 0.00075 30.5 12.3 46 88-133 34-79 (239)
122 PRK04406 hypothetical protein; 82.5 11 0.00023 27.9 7.5 46 108-160 6-51 (75)
123 TIGR02209 ftsL_broad cell divi 82.5 6.6 0.00014 28.2 6.4 34 121-154 25-58 (85)
124 KOG0982 Centrosomal protein Nu 82.4 23 0.0005 34.6 11.6 55 107-161 298-352 (502)
125 PF09744 Jnk-SapK_ap_N: JNK_SA 82.4 22 0.00048 29.7 10.3 50 109-158 92-141 (158)
126 KOG1414 Transcriptional activa 82.1 0.22 4.8E-06 46.5 -1.8 45 82-126 282-326 (395)
127 PF08317 Spc7: Spc7 kinetochor 82.1 12 0.00025 34.0 9.2 55 107-161 210-264 (325)
128 COG4942 Membrane-bound metallo 81.6 20 0.00044 34.5 11.0 65 85-149 38-102 (420)
129 PRK10803 tol-pal system protei 81.5 7.6 0.00016 34.4 7.7 52 106-157 54-105 (263)
130 COG4942 Membrane-bound metallo 81.1 28 0.00062 33.5 11.8 56 106-161 73-128 (420)
131 KOG4343 bZIP transcription fac 81.1 6.1 0.00013 39.4 7.4 30 106-135 309-338 (655)
132 PF07798 DUF1640: Protein of u 81.1 12 0.00026 31.0 8.4 16 145-160 117-132 (177)
133 KOG2077 JNK/SAPK-associated pr 81.0 6 0.00013 40.0 7.4 52 109-160 325-376 (832)
134 PF06785 UPF0242: Uncharacteri 80.7 25 0.00054 33.4 10.9 74 84-161 74-161 (401)
135 PRK00736 hypothetical protein; 80.5 19 0.0004 26.0 8.1 19 111-129 3-21 (68)
136 KOG3650 Predicted coiled-coil 80.2 9.4 0.0002 30.4 6.9 42 112-153 62-103 (120)
137 PF07558 Shugoshin_N: Shugoshi 79.9 2.2 4.9E-05 28.7 2.9 36 116-151 10-45 (46)
138 PF10186 Atg14: UV radiation r 79.7 38 0.00082 29.0 12.0 30 103-132 67-96 (302)
139 TIGR03752 conj_TIGR03752 integ 79.7 6.4 0.00014 38.3 7.0 38 125-162 107-144 (472)
140 PF10211 Ax_dynein_light: Axon 79.6 28 0.0006 29.6 10.2 41 108-148 122-162 (189)
141 KOG4797 Transcriptional regula 79.6 4.8 0.0001 32.4 5.2 32 119-150 66-97 (123)
142 PF05103 DivIVA: DivIVA protei 79.4 1.1 2.4E-05 34.5 1.5 53 106-158 25-77 (131)
143 PF11365 DUF3166: Protein of u 79.3 7.4 0.00016 30.3 6.0 45 117-161 5-49 (96)
144 PF04999 FtsL: Cell division p 79.2 9.1 0.0002 28.4 6.4 47 115-161 30-78 (97)
145 PF04340 DUF484: Protein of un 79.1 9.8 0.00021 32.4 7.4 44 110-157 44-87 (225)
146 PF04977 DivIC: Septum formati 78.8 7.4 0.00016 27.2 5.5 30 124-153 21-50 (80)
147 PRK00846 hypothetical protein; 78.6 19 0.0004 27.0 7.7 16 146-161 39-54 (77)
148 PF08172 CASP_C: CASP C termin 78.5 13 0.00028 33.1 8.1 54 111-164 84-137 (248)
149 PF09789 DUF2353: Uncharacteri 78.0 23 0.00051 32.9 9.9 44 110-153 69-112 (319)
150 KOG2391 Vacuolar sorting prote 77.8 23 0.00049 33.6 9.7 58 102-159 221-278 (365)
151 PF13935 Ead_Ea22: Ead/Ea22-li 77.5 27 0.00059 28.1 9.1 57 104-160 79-138 (139)
152 KOG3650 Predicted coiled-coil 77.5 13 0.00028 29.7 7.0 49 114-162 57-105 (120)
153 KOG1029 Endocytic adaptor prot 77.2 30 0.00065 36.4 11.1 19 142-160 438-456 (1118)
154 KOG1103 Predicted coiled-coil 77.2 16 0.00034 35.2 8.6 68 94-161 226-293 (561)
155 KOG4196 bZIP transcription fac 77.1 16 0.00035 30.1 7.6 55 106-161 47-101 (135)
156 PF02403 Seryl_tRNA_N: Seryl-t 77.0 29 0.00062 26.1 9.2 23 138-160 71-93 (108)
157 KOG4571 Activating transcripti 77.0 16 0.00035 33.6 8.4 35 127-161 248-282 (294)
158 TIGR02894 DNA_bind_RsfA transc 77.0 22 0.00047 30.2 8.6 44 111-154 102-145 (161)
159 PF12718 Tropomyosin_1: Tropom 76.9 26 0.00057 28.5 8.9 26 106-131 35-60 (143)
160 PF07888 CALCOCO1: Calcium bin 76.6 53 0.0011 32.8 12.4 9 36-44 75-83 (546)
161 PF05812 Herpes_BLRF2: Herpesv 76.5 4.8 0.00011 32.5 4.4 30 104-133 1-30 (118)
162 PF00038 Filament: Intermediat 76.4 53 0.0012 28.8 11.8 36 118-153 214-249 (312)
163 KOG2010 Double stranded RNA bi 76.0 26 0.00056 33.3 9.5 79 80-161 122-209 (405)
164 COG1792 MreC Cell shape-determ 75.8 7.5 0.00016 35.0 5.9 35 116-150 69-106 (284)
165 PF12709 Kinetocho_Slk19: Cent 75.6 17 0.00036 28.0 6.9 32 111-142 47-78 (87)
166 PF05377 FlaC_arch: Flagella a 75.4 15 0.00032 26.0 6.1 23 138-160 18-40 (55)
167 PF09728 Taxilin: Myosin-like 75.3 23 0.00051 32.3 9.1 56 106-161 244-299 (309)
168 PF07716 bZIP_2: Basic region 74.9 10 0.00023 25.6 5.2 28 128-155 26-53 (54)
169 PRK14127 cell division protein 74.9 8.3 0.00018 30.6 5.3 27 135-161 38-64 (109)
170 PRK10963 hypothetical protein; 74.7 14 0.0003 31.8 7.1 17 114-130 45-61 (223)
171 PF13851 GAS: Growth-arrest sp 74.5 54 0.0012 28.0 12.6 58 82-139 69-126 (201)
172 PF07926 TPR_MLP1_2: TPR/MLP1/ 74.3 41 0.00089 26.6 10.3 18 144-161 101-118 (132)
173 PRK10803 tol-pal system protei 74.2 16 0.00035 32.3 7.6 40 103-142 58-97 (263)
174 COG3879 Uncharacterized protei 73.9 22 0.00048 32.0 8.3 55 112-166 56-114 (247)
175 KOG4643 Uncharacterized coiled 73.7 18 0.00039 38.6 8.7 55 103-157 527-584 (1195)
176 PF05266 DUF724: Protein of un 73.7 57 0.0012 27.9 11.5 62 100-161 125-186 (190)
177 PHA03162 hypothetical protein; 73.6 2.7 5.8E-05 34.7 2.3 28 103-130 10-37 (135)
178 PF10482 CtIP_N: Tumour-suppre 73.5 31 0.00068 27.9 8.3 57 101-157 9-65 (120)
179 PF08826 DMPK_coil: DMPK coile 73.3 31 0.00067 24.7 7.9 40 114-160 19-58 (61)
180 KOG0250 DNA repair protein RAD 73.2 67 0.0015 34.5 12.7 58 104-161 370-428 (1074)
181 PF13863 DUF4200: Domain of un 72.9 40 0.00086 25.8 9.7 43 89-131 64-106 (126)
182 PF15035 Rootletin: Ciliary ro 72.9 29 0.00064 29.5 8.5 23 113-135 88-110 (182)
183 PF04111 APG6: Autophagy prote 72.7 64 0.0014 29.5 11.2 47 105-151 63-109 (314)
184 PF01486 K-box: K-box region; 72.3 16 0.00036 27.4 6.2 31 121-151 69-99 (100)
185 PF05667 DUF812: Protein of un 72.1 29 0.00063 34.7 9.5 55 103-157 325-379 (594)
186 PF09726 Macoilin: Transmembra 72.0 45 0.00098 33.9 10.9 15 109-123 548-562 (697)
187 PF04642 DUF601: Protein of un 71.9 5 0.00011 36.7 3.8 57 106-162 217-273 (311)
188 PF03980 Nnf1: Nnf1 ; InterPr 71.9 7.1 0.00015 29.7 4.2 28 104-131 78-105 (109)
189 PF12329 TMF_DNA_bd: TATA elem 71.8 36 0.00078 24.8 8.6 53 108-160 7-59 (74)
190 PF10174 Cast: RIM-binding pro 71.6 25 0.00054 36.3 9.1 60 102-161 297-356 (775)
191 PF01166 TSC22: TSC-22/dip/bun 71.6 7.5 0.00016 27.9 3.9 27 108-134 16-42 (59)
192 PF05667 DUF812: Protein of un 71.3 26 0.00057 34.9 9.0 59 101-160 330-388 (594)
193 PF05377 FlaC_arch: Flagella a 71.3 14 0.0003 26.2 5.2 30 108-137 2-31 (55)
194 PF10146 zf-C4H2: Zinc finger- 71.2 33 0.00072 30.3 8.7 52 105-156 49-103 (230)
195 PRK04863 mukB cell division pr 71.1 67 0.0015 35.6 12.6 20 85-104 321-340 (1486)
196 PF04849 HAP1_N: HAP1 N-termin 71.1 37 0.0008 31.5 9.3 34 118-151 232-265 (306)
197 PF14988 DUF4515: Domain of un 71.0 58 0.0013 28.1 10.0 46 111-156 154-199 (206)
198 cd07429 Cby_like Chibby, a nuc 71.0 12 0.00026 29.7 5.4 25 135-159 80-104 (108)
199 PHA03155 hypothetical protein; 70.8 5.9 0.00013 31.9 3.6 26 106-131 8-33 (115)
200 PF03980 Nnf1: Nnf1 ; InterPr 70.6 35 0.00075 25.9 7.8 32 124-155 77-108 (109)
201 KOG4643 Uncharacterized coiled 70.5 60 0.0013 34.9 11.5 81 81-161 369-449 (1195)
202 TIGR02209 ftsL_broad cell divi 70.4 19 0.0004 25.8 5.9 31 103-133 28-58 (85)
203 COG1579 Zn-ribbon protein, pos 70.2 81 0.0017 28.2 11.0 34 106-139 89-122 (239)
204 PF09789 DUF2353: Uncharacteri 70.1 14 0.00031 34.3 6.4 67 95-161 19-99 (319)
205 KOG3335 Predicted coiled-coil 70.1 10 0.00022 32.7 5.1 44 81-130 87-130 (181)
206 PF00038 Filament: Intermediat 70.1 76 0.0017 27.8 12.9 34 102-135 219-252 (312)
207 PF05837 CENP-H: Centromere pr 69.9 25 0.00055 27.1 6.9 29 107-135 18-46 (106)
208 KOG0288 WD40 repeat protein Ti 69.8 90 0.002 30.4 11.8 28 104-131 46-73 (459)
209 COG4238 Murein lipoprotein [Ce 69.7 46 0.00099 25.2 7.9 52 106-157 25-76 (78)
210 PF15397 DUF4618: Domain of un 69.4 88 0.0019 28.3 13.6 51 111-161 177-227 (258)
211 KOG0977 Nuclear envelope prote 69.3 28 0.00061 34.6 8.6 55 107-161 163-217 (546)
212 PF10805 DUF2730: Protein of u 69.1 51 0.0011 25.4 9.2 57 104-160 33-91 (106)
213 KOG0161 Myosin class II heavy 68.7 71 0.0015 36.4 12.3 55 107-161 1478-1539(1930)
214 PF09727 CortBP2: Cortactin-bi 68.7 79 0.0017 27.5 10.8 46 115-160 136-181 (192)
215 PF15290 Syntaphilin: Golgi-lo 68.6 41 0.00089 31.1 8.9 29 132-160 106-136 (305)
216 PF10506 MCC-bdg_PDZ: PDZ doma 68.5 35 0.00075 24.9 6.9 48 110-157 2-49 (67)
217 PF14915 CCDC144C: CCDC144C pr 68.4 58 0.0013 30.3 9.9 65 94-158 181-245 (305)
218 PF13815 Dzip-like_N: Iguana/D 68.1 25 0.00055 27.4 6.7 38 117-154 77-114 (118)
219 PF07412 Geminin: Geminin; In 67.9 33 0.00071 30.0 7.9 46 117-162 122-170 (200)
220 COG2433 Uncharacterized conser 67.9 39 0.00084 34.3 9.2 29 106-134 436-464 (652)
221 PF10883 DUF2681: Protein of u 67.8 38 0.00083 25.9 7.3 41 112-152 22-64 (87)
222 PF12709 Kinetocho_Slk19: Cent 67.7 27 0.00059 26.8 6.5 25 108-132 51-75 (87)
223 PF07926 TPR_MLP1_2: TPR/MLP1/ 67.7 33 0.00071 27.2 7.3 43 111-153 89-131 (132)
224 PF07334 IFP_35_N: Interferon- 67.6 16 0.00034 27.5 5.1 25 137-161 3-27 (76)
225 COG3883 Uncharacterized protei 67.0 48 0.001 30.2 9.0 60 102-161 34-93 (265)
226 PF14817 HAUS5: HAUS augmin-li 66.8 41 0.00088 34.0 9.3 44 102-145 96-139 (632)
227 PF04728 LPP: Lipoprotein leuc 66.7 43 0.00094 23.7 8.3 48 113-160 3-50 (56)
228 COG2433 Uncharacterized conser 66.5 25 0.00054 35.6 7.7 28 108-135 424-451 (652)
229 PF04871 Uso1_p115_C: Uso1 / p 66.4 68 0.0015 25.9 10.5 55 108-162 57-112 (136)
230 PF09730 BicD: Microtubule-ass 66.4 38 0.00083 34.7 9.1 53 108-160 71-123 (717)
231 KOG0946 ER-Golgi vesicle-tethe 66.3 50 0.0011 34.8 9.8 66 96-161 661-726 (970)
232 PF13815 Dzip-like_N: Iguana/D 65.5 45 0.00097 26.0 7.6 38 123-160 76-113 (118)
233 PF05911 DUF869: Plant protein 65.4 34 0.00074 35.3 8.6 46 106-151 92-158 (769)
234 KOG0995 Centromere-associated 65.4 68 0.0015 32.3 10.3 51 109-159 276-326 (581)
235 PF04136 Sec34: Sec34-like fam 65.3 57 0.0012 26.8 8.5 56 106-161 21-76 (157)
236 PRK13729 conjugal transfer pil 65.1 40 0.00086 33.1 8.6 59 104-162 67-125 (475)
237 KOG2264 Exostosin EXT1L [Signa 64.9 52 0.0011 33.6 9.5 57 105-161 92-148 (907)
238 PHA03011 hypothetical protein; 64.6 62 0.0013 26.0 8.1 56 105-160 63-118 (120)
239 PRK15396 murein lipoprotein; P 64.0 58 0.0012 24.4 7.5 45 107-151 26-70 (78)
240 TIGR02231 conserved hypothetic 63.8 1.4E+02 0.003 28.6 12.6 48 115-162 126-173 (525)
241 KOG0980 Actin-binding protein 63.8 1E+02 0.0022 32.8 11.5 60 93-152 453-512 (980)
242 PF05700 BCAS2: Breast carcino 63.8 72 0.0016 27.5 9.2 28 133-160 181-208 (221)
243 PF03670 UPF0184: Uncharacteri 63.6 60 0.0013 24.7 7.6 44 109-152 29-72 (83)
244 KOG0804 Cytoplasmic Zn-finger 63.3 1E+02 0.0023 30.3 11.0 74 88-161 367-448 (493)
245 COG1196 Smc Chromosome segrega 62.9 1.1E+02 0.0024 32.5 12.1 53 105-157 438-490 (1163)
246 PF09738 DUF2051: Double stran 62.5 57 0.0012 30.0 8.8 59 108-166 114-176 (302)
247 KOG0709 CREB/ATF family transc 62.2 22 0.00048 34.7 6.3 58 77-134 247-314 (472)
248 PF08961 DUF1875: Domain of un 62.2 2.5 5.5E-05 37.7 0.0 41 106-146 122-162 (243)
249 PF00769 ERM: Ezrin/radixin/mo 61.4 1.2E+02 0.0025 26.8 10.9 50 110-159 65-114 (246)
250 COG3352 FlaC Putative archaeal 61.3 69 0.0015 27.1 8.3 56 106-161 79-135 (157)
251 KOG4674 Uncharacterized conser 61.1 58 0.0012 36.9 9.8 64 98-161 1235-1298(1822)
252 PF12777 MT: Microtubule-bindi 60.9 68 0.0015 29.3 9.0 35 90-124 226-260 (344)
253 TIGR00606 rad50 rad50. This fa 60.8 1.3E+02 0.0027 32.5 12.1 32 92-123 843-874 (1311)
254 PRK05431 seryl-tRNA synthetase 60.7 1.4E+02 0.0029 28.4 11.2 22 139-160 71-92 (425)
255 PF10473 CENP-F_leu_zip: Leuci 60.5 95 0.0021 25.6 12.2 9 152-160 84-92 (140)
256 COG2900 SlyX Uncharacterized p 60.5 68 0.0015 23.9 8.3 50 106-162 8-57 (72)
257 KOG3156 Uncharacterized membra 60.5 64 0.0014 28.7 8.3 42 118-159 99-141 (220)
258 PF08537 NBP1: Fungal Nap bind 60.5 1.2E+02 0.0025 28.5 10.4 81 84-164 121-226 (323)
259 TIGR01843 type_I_hlyD type I s 60.4 1.2E+02 0.0025 27.2 10.3 23 145-167 257-279 (423)
260 KOG1029 Endocytic adaptor prot 60.0 1.3E+02 0.0027 32.0 11.3 14 145-158 448-461 (1118)
261 PTZ00454 26S protease regulato 59.9 46 0.00099 31.3 7.9 23 139-161 41-63 (398)
262 PF10212 TTKRSYEDQ: Predicted 59.9 1.1E+02 0.0024 30.4 10.7 57 105-161 419-475 (518)
263 PF09304 Cortex-I_coil: Cortex 59.6 89 0.0019 24.9 12.5 66 95-160 5-70 (107)
264 PF01486 K-box: K-box region; 59.6 27 0.00059 26.2 5.2 23 107-129 76-98 (100)
265 PF10828 DUF2570: Protein of u 59.4 80 0.0017 24.3 9.5 58 108-165 34-91 (110)
266 PF07889 DUF1664: Protein of u 59.3 95 0.0021 25.2 10.7 57 105-161 67-123 (126)
267 PF05529 Bap31: B-cell recepto 59.3 70 0.0015 26.5 8.2 38 118-155 152-189 (192)
268 KOG4807 F-actin binding protei 59.2 78 0.0017 31.0 9.3 53 102-154 389-455 (593)
269 PF05335 DUF745: Protein of un 59.1 1.1E+02 0.0024 26.3 9.4 60 102-161 63-122 (188)
270 PF04859 DUF641: Plant protein 59.1 36 0.00078 27.8 6.2 42 107-148 88-129 (131)
271 TIGR02977 phageshock_pspA phag 59.0 1.1E+02 0.0025 26.0 10.9 52 105-156 98-149 (219)
272 PF06632 XRCC4: DNA double-str 59.0 47 0.001 31.0 7.7 13 149-161 195-207 (342)
273 PF07058 Myosin_HC-like: Myosi 58.9 32 0.00069 32.3 6.4 47 115-161 2-48 (351)
274 PF08232 Striatin: Striatin fa 58.8 41 0.00089 27.1 6.5 33 110-142 29-61 (134)
275 PF15619 Lebercilin: Ciliary p 58.6 1.2E+02 0.0026 26.0 10.0 33 96-128 8-41 (194)
276 PRK13922 rod shape-determining 58.6 32 0.00069 30.0 6.2 38 121-158 70-110 (276)
277 KOG0288 WD40 repeat protein Ti 58.5 1.1E+02 0.0023 29.9 10.1 26 111-136 46-71 (459)
278 PF05700 BCAS2: Breast carcino 58.2 1.2E+02 0.0026 26.1 11.5 52 101-153 164-215 (221)
279 PF05837 CENP-H: Centromere pr 58.2 73 0.0016 24.5 7.5 32 134-165 58-89 (106)
280 PRK03918 chromosome segregatio 58.1 2.1E+02 0.0046 28.8 12.8 6 110-115 204-209 (880)
281 PF15619 Lebercilin: Ciliary p 58.1 91 0.002 26.7 8.8 33 127-159 157-189 (194)
282 KOG0239 Kinesin (KAR3 subfamil 57.8 1.1E+02 0.0023 31.2 10.4 10 152-161 304-313 (670)
283 PRK14872 rod shape-determining 57.6 57 0.0012 30.5 8.0 33 115-147 59-94 (337)
284 PRK11546 zraP zinc resistance 57.5 70 0.0015 26.6 7.7 53 105-157 60-112 (143)
285 PF09730 BicD: Microtubule-ass 57.4 47 0.001 34.1 7.9 47 114-160 98-147 (717)
286 PF10146 zf-C4H2: Zinc finger- 57.2 1.2E+02 0.0027 26.7 9.6 40 103-142 29-68 (230)
287 KOG0612 Rho-associated, coiled 56.7 1.8E+02 0.0038 32.1 12.1 47 107-153 502-548 (1317)
288 KOG3433 Protein involved in me 56.6 1E+02 0.0022 27.1 8.7 64 89-152 99-162 (203)
289 KOG2129 Uncharacterized conser 56.2 19 0.00041 35.2 4.7 42 109-150 46-87 (552)
290 PRK10920 putative uroporphyrin 56.0 1.1E+02 0.0025 29.0 9.8 55 107-161 68-126 (390)
291 PF10205 KLRAQ: Predicted coil 56.0 1E+02 0.0022 24.4 9.2 45 116-160 29-73 (102)
292 KOG3564 GTPase-activating prot 56.0 1E+02 0.0023 30.8 9.7 63 99-161 42-104 (604)
293 PHA02562 46 endonuclease subun 56.0 1.5E+02 0.0031 28.1 10.6 52 106-157 337-388 (562)
294 PF03961 DUF342: Protein of un 56.0 84 0.0018 29.7 8.9 56 105-160 347-408 (451)
295 PRK14127 cell division protein 55.8 40 0.00086 26.7 5.7 30 132-161 42-71 (109)
296 PRK10636 putative ABC transpor 55.7 93 0.002 30.7 9.5 57 105-161 562-625 (638)
297 KOG0996 Structural maintenance 55.5 2.6E+02 0.0056 30.8 13.0 61 95-155 531-591 (1293)
298 PF13870 DUF4201: Domain of un 55.4 1.2E+02 0.0025 24.9 9.0 57 106-162 77-133 (177)
299 PF06810 Phage_GP20: Phage min 55.3 74 0.0016 26.2 7.5 37 101-137 29-68 (155)
300 PRK03992 proteasome-activating 55.1 57 0.0012 30.2 7.6 45 110-161 5-49 (389)
301 KOG0243 Kinesin-like protein [ 55.0 1E+02 0.0022 33.1 10.1 52 108-159 443-494 (1041)
302 PRK11147 ABC transporter ATPas 54.7 68 0.0015 31.5 8.4 56 106-161 568-629 (635)
303 PF10226 DUF2216: Uncharacteri 54.5 85 0.0018 27.5 8.0 78 83-160 21-120 (195)
304 TIGR00606 rad50 rad50. This fa 54.4 1.4E+02 0.0031 32.1 11.2 58 104-161 1026-1088(1311)
305 PF12001 DUF3496: Domain of un 54.3 1.1E+02 0.0024 24.4 10.1 76 107-182 8-93 (111)
306 KOG4001 Axonemal dynein light 54.0 88 0.0019 28.1 8.1 54 94-147 169-226 (259)
307 PF14645 Chibby: Chibby family 54.0 68 0.0015 25.4 6.8 35 112-146 77-111 (116)
308 PF07200 Mod_r: Modifier of ru 53.9 1.1E+02 0.0024 24.2 8.8 74 85-160 35-108 (150)
309 KOG4360 Uncharacterized coiled 53.7 82 0.0018 31.6 8.6 46 105-150 218-263 (596)
310 PF04999 FtsL: Cell division p 53.6 45 0.00097 24.6 5.5 26 108-133 44-69 (97)
311 PF05557 MAD: Mitotic checkpoi 53.6 1.1E+02 0.0024 30.7 9.8 23 141-163 566-588 (722)
312 PF10481 CENP-F_N: Cenp-F N-te 53.6 1.5E+02 0.0033 27.5 9.8 78 81-161 30-122 (307)
313 PF08232 Striatin: Striatin fa 53.4 1.2E+02 0.0026 24.4 8.3 38 120-157 25-62 (134)
314 PF04375 HemX: HemX; InterPro 52.9 1.1E+02 0.0025 28.3 9.1 24 137-160 96-119 (372)
315 KOG0995 Centromere-associated 52.7 70 0.0015 32.2 8.1 46 105-150 279-324 (581)
316 KOG0946 ER-Golgi vesicle-tethe 52.6 1.8E+02 0.0039 30.9 11.1 62 97-158 655-716 (970)
317 PF13805 Pil1: Eisosome compon 52.5 94 0.002 28.4 8.3 64 85-153 127-191 (271)
318 PF10211 Ax_dynein_light: Axon 52.4 1.5E+02 0.0031 25.2 11.3 59 102-160 123-182 (189)
319 PF12711 Kinesin-relat_1: Kine 52.3 58 0.0013 24.9 5.9 41 114-156 45-85 (86)
320 PF05600 DUF773: Protein of un 51.9 82 0.0018 30.8 8.3 56 106-161 432-487 (507)
321 PRK03992 proteasome-activating 51.7 57 0.0012 30.2 7.0 43 106-148 8-50 (389)
322 PF00769 ERM: Ezrin/radixin/mo 51.6 1.7E+02 0.0037 25.8 10.9 73 89-161 51-123 (246)
323 COG5185 HEC1 Protein involved 51.6 85 0.0018 31.3 8.3 61 105-165 486-550 (622)
324 KOG1103 Predicted coiled-coil 51.4 1.6E+02 0.0035 28.6 9.9 67 82-151 111-177 (561)
325 PF07851 TMPIT: TMPIT-like pro 51.3 1.4E+02 0.0031 27.9 9.4 19 144-162 71-89 (330)
326 PF06818 Fez1: Fez1; InterPro 51.0 61 0.0013 28.4 6.6 21 111-131 85-105 (202)
327 KOG0804 Cytoplasmic Zn-finger 50.9 94 0.002 30.6 8.4 44 118-161 380-423 (493)
328 PRK05892 nucleoside diphosphat 50.9 1.3E+02 0.0028 24.9 8.3 58 106-163 11-76 (158)
329 PF07558 Shugoshin_N: Shugoshi 50.8 20 0.00044 24.0 2.9 40 88-128 4-43 (46)
330 PTZ00454 26S protease regulato 50.7 84 0.0018 29.6 8.0 38 111-155 27-64 (398)
331 PF11180 DUF2968: Protein of u 50.7 1.7E+02 0.0037 25.5 9.7 24 138-161 151-174 (192)
332 KOG0161 Myosin class II heavy 50.7 2.7E+02 0.0059 32.0 12.9 78 84-161 1434-1511(1930)
333 PF09311 Rab5-bind: Rabaptin-l 50.6 5.9 0.00013 33.2 0.3 51 111-161 27-77 (181)
334 PRK14872 rod shape-determining 50.4 25 0.00054 32.9 4.4 25 135-159 58-82 (337)
335 TIGR03185 DNA_S_dndD DNA sulfu 50.4 88 0.0019 30.9 8.4 17 144-160 272-288 (650)
336 PRK11546 zraP zinc resistance 50.3 1.1E+02 0.0024 25.4 7.7 17 87-103 51-67 (143)
337 PF10359 Fmp27_WPPW: RNA pol I 50.3 59 0.0013 31.2 7.1 58 106-163 170-229 (475)
338 PF12808 Mto2_bdg: Micro-tubul 50.0 31 0.00067 24.1 3.8 26 108-133 24-49 (52)
339 KOG0483 Transcription factor H 49.7 41 0.00088 29.2 5.3 44 118-161 103-146 (198)
340 PF06698 DUF1192: Protein of u 49.5 67 0.0015 22.9 5.5 24 108-131 23-46 (59)
341 TIGR00414 serS seryl-tRNA synt 49.5 98 0.0021 29.3 8.3 12 144-155 79-90 (418)
342 PF15058 Speriolin_N: Sperioli 49.4 27 0.00058 30.6 4.1 26 129-154 7-32 (200)
343 PF07407 Seadorna_VP6: Seadorn 49.3 28 0.00061 33.1 4.6 30 107-136 33-62 (420)
344 KOG0483 Transcription factor H 49.2 33 0.00072 29.7 4.7 44 116-159 108-151 (198)
345 KOG3433 Protein involved in me 49.2 1.9E+02 0.004 25.5 9.9 22 108-129 83-104 (203)
346 COG2900 SlyX Uncharacterized p 49.2 1.1E+02 0.0024 22.8 7.8 15 109-123 4-18 (72)
347 KOG0933 Structural maintenance 48.9 3.3E+02 0.0071 29.7 12.4 49 106-154 815-863 (1174)
348 PRK14160 heat shock protein Gr 48.8 1.4E+02 0.0031 26.1 8.6 39 109-147 57-95 (211)
349 PRK10929 putative mechanosensi 48.6 1.5E+02 0.0033 32.0 10.2 47 115-161 260-306 (1109)
350 KOG1853 LIS1-interacting prote 48.2 1.1E+02 0.0025 28.2 8.1 22 140-161 163-184 (333)
351 PF06428 Sec2p: GDP/GTP exchan 48.0 78 0.0017 24.6 6.2 30 132-161 42-71 (100)
352 KOG2129 Uncharacterized conser 47.8 1.1E+02 0.0025 30.1 8.4 18 114-131 286-303 (552)
353 PF14645 Chibby: Chibby family 47.5 55 0.0012 26.0 5.4 14 114-127 72-85 (116)
354 smart00340 HALZ homeobox assoc 46.8 53 0.0011 22.3 4.4 26 108-133 7-32 (44)
355 PF06210 DUF1003: Protein of u 46.8 1.4E+02 0.003 23.4 7.9 24 120-143 80-103 (108)
356 COG4372 Uncharacterized protei 46.7 2.9E+02 0.0063 27.1 10.9 40 108-147 139-178 (499)
357 PF02344 Myc-LZ: Myc leucine z 46.5 44 0.00096 21.3 3.7 24 111-134 6-29 (32)
358 PF06216 RTBV_P46: Rice tungro 46.4 1.6E+02 0.0035 27.3 8.8 46 91-139 66-111 (389)
359 PF03962 Mnd1: Mnd1 family; I 46.3 1.8E+02 0.004 24.6 9.8 8 143-150 144-151 (188)
360 PRK10361 DNA recombination pro 46.3 3E+02 0.0065 27.1 12.0 23 111-133 65-87 (475)
361 PRK04863 mukB cell division pr 46.2 3.3E+02 0.0072 30.4 12.6 10 9-18 217-226 (1486)
362 KOG0982 Centrosomal protein Nu 46.2 2.2E+02 0.0047 28.1 10.0 27 135-161 305-331 (502)
363 PF13870 DUF4201: Domain of un 46.0 1.4E+02 0.003 24.5 7.8 40 115-154 93-132 (177)
364 PF07047 OPA3: Optic atrophy 3 45.7 50 0.0011 26.5 5.0 40 81-126 93-132 (134)
365 KOG4360 Uncharacterized coiled 45.5 1.5E+02 0.0033 29.8 9.0 56 104-159 196-251 (596)
366 PF15290 Syntaphilin: Golgi-lo 45.5 2.6E+02 0.0056 26.1 12.9 26 94-120 78-103 (305)
367 COG4372 Uncharacterized protei 45.5 3E+02 0.0066 27.0 10.8 39 116-154 140-178 (499)
368 PF10883 DUF2681: Protein of u 45.2 85 0.0018 24.0 5.9 35 127-161 23-57 (87)
369 PF00261 Tropomyosin: Tropomyo 44.6 2.1E+02 0.0045 24.7 12.9 63 99-161 162-224 (237)
370 PLN02320 seryl-tRNA synthetase 44.5 2.8E+02 0.006 27.4 10.7 55 106-160 93-156 (502)
371 PF00261 Tropomyosin: Tropomyo 44.3 2.1E+02 0.0045 24.7 10.0 15 145-159 173-187 (237)
372 PF11544 Spc42p: Spindle pole 44.2 1.4E+02 0.003 22.5 9.0 53 108-161 7-59 (76)
373 PRK10722 hypothetical protein; 44.1 88 0.0019 28.3 6.7 28 134-161 176-203 (247)
374 PRK06569 F0F1 ATP synthase sub 44.0 1.9E+02 0.0042 24.2 10.8 47 82-128 38-84 (155)
375 PF10481 CENP-F_N: Cenp-F N-te 43.9 2.2E+02 0.0048 26.4 9.3 34 125-158 100-133 (307)
376 PF05384 DegS: Sensor protein 43.8 1.9E+02 0.0042 24.2 11.0 72 90-161 18-118 (159)
377 PF14282 FlxA: FlxA-like prote 43.8 1.4E+02 0.0031 22.9 7.1 50 112-161 18-71 (106)
378 KOG4797 Transcriptional regula 43.8 55 0.0012 26.5 4.8 41 82-133 54-94 (123)
379 TIGR01010 BexC_CtrB_KpsE polys 43.5 1.7E+02 0.0037 26.5 8.6 22 140-161 213-234 (362)
380 PF13118 DUF3972: Protein of u 43.5 1.2E+02 0.0027 24.7 6.9 36 106-141 78-113 (126)
381 cd07666 BAR_SNX7 The Bin/Amphi 43.5 1.9E+02 0.004 25.8 8.6 50 100-152 157-206 (243)
382 COG3159 Uncharacterized protei 43.4 1.1E+02 0.0023 27.3 7.0 29 108-136 54-85 (218)
383 PF03961 DUF342: Protein of un 43.3 2.9E+02 0.0063 26.1 10.4 27 135-161 376-402 (451)
384 COG1730 GIM5 Predicted prefold 42.8 1.5E+02 0.0033 24.5 7.5 13 132-144 120-132 (145)
385 COG2919 Septum formation initi 42.6 1.6E+02 0.0035 23.0 9.7 23 132-154 62-84 (117)
386 PF04568 IATP: Mitochondrial A 42.6 1.6E+02 0.0035 23.0 7.5 45 90-134 53-97 (100)
387 PF10226 DUF2216: Uncharacteri 42.3 2.4E+02 0.0052 24.8 9.2 36 116-151 44-79 (195)
388 COG1382 GimC Prefoldin, chaper 42.2 1.2E+02 0.0025 24.6 6.5 38 125-162 75-112 (119)
389 PF06008 Laminin_I: Laminin Do 42.2 2.2E+02 0.0047 24.8 8.8 18 144-161 123-140 (264)
390 COG5570 Uncharacterized small 42.1 49 0.0011 23.5 3.8 50 106-155 5-54 (57)
391 TIGR01554 major_cap_HK97 phage 41.8 2.4E+02 0.0053 25.7 9.4 25 107-131 35-59 (378)
392 PRK09413 IS2 repressor TnpA; R 41.6 72 0.0016 24.7 5.2 12 139-150 90-101 (121)
393 PF08606 Prp19: Prp19/Pso4-lik 41.4 1.3E+02 0.0028 22.3 6.1 45 110-154 26-70 (70)
394 TIGR01000 bacteriocin_acc bact 41.3 2.9E+02 0.0062 26.0 10.0 33 135-167 292-324 (457)
395 PF15233 SYCE1: Synaptonemal c 41.3 2.1E+02 0.0045 23.7 8.2 13 108-120 8-20 (134)
396 PF07111 HCR: Alpha helical co 41.3 4.4E+02 0.0094 27.5 11.9 37 99-135 507-543 (739)
397 KOG0978 E3 ubiquitin ligase in 41.1 3.4E+02 0.0073 28.1 10.9 44 123-166 583-626 (698)
398 PF13942 Lipoprotein_20: YfhG 41.0 1.3E+02 0.0029 25.9 7.0 28 134-161 130-157 (179)
399 KOG0933 Structural maintenance 41.0 5.2E+02 0.011 28.3 12.6 46 116-161 818-863 (1174)
400 PF05701 WEMBL: Weak chloropla 40.7 3E+02 0.0066 26.8 10.3 66 96-161 292-357 (522)
401 PF02646 RmuC: RmuC family; I 40.6 1.2E+02 0.0027 27.2 7.2 15 144-158 51-65 (304)
402 TIGR01461 greB transcription e 40.6 1.2E+02 0.0027 24.8 6.7 56 108-163 10-74 (156)
403 PF11853 DUF3373: Protein of u 40.5 24 0.00053 34.6 2.8 23 107-129 32-54 (489)
404 PF11382 DUF3186: Protein of u 40.4 1E+02 0.0022 28.0 6.7 31 106-136 32-62 (308)
405 PF06428 Sec2p: GDP/GTP exchan 40.4 1.7E+02 0.0038 22.7 8.1 19 143-161 46-64 (100)
406 PRK12705 hypothetical protein; 40.0 3.8E+02 0.0083 26.5 12.4 9 94-102 58-66 (508)
407 PF08961 DUF1875: Domain of un 40.0 9.5 0.00021 34.1 0.0 32 108-139 131-162 (243)
408 PF10168 Nup88: Nuclear pore c 40.0 4.2E+02 0.009 27.2 11.5 30 105-134 578-607 (717)
409 TIGR02231 conserved hypothetic 39.9 3.5E+02 0.0075 26.0 12.1 37 125-161 129-165 (525)
410 PF13805 Pil1: Eisosome compon 39.9 89 0.0019 28.5 6.1 53 83-135 142-194 (271)
411 PF11068 YlqD: YlqD protein; 39.9 2E+02 0.0044 23.3 9.5 57 106-162 27-88 (131)
412 PF15188 CCDC-167: Coiled-coil 39.7 1.6E+02 0.0034 22.5 6.6 24 137-160 39-62 (85)
413 PF06305 DUF1049: Protein of u 39.7 43 0.00093 22.9 3.3 12 106-117 55-66 (68)
414 PF07334 IFP_35_N: Interferon- 39.4 66 0.0014 24.1 4.4 17 116-132 3-19 (76)
415 PF05384 DegS: Sensor protein 39.3 1.8E+02 0.004 24.3 7.5 46 116-161 23-68 (159)
416 PF10498 IFT57: Intra-flagella 39.3 3.3E+02 0.0072 25.6 11.3 49 113-161 266-314 (359)
417 PF06305 DUF1049: Protein of u 39.2 31 0.00067 23.6 2.5 22 104-125 46-67 (68)
418 PF02388 FemAB: FemAB family; 39.0 1.7E+02 0.0037 27.3 8.1 26 106-131 242-267 (406)
419 KOG4807 F-actin binding protei 38.9 2E+02 0.0044 28.3 8.6 43 118-160 440-489 (593)
420 COG4717 Uncharacterized conser 38.9 2.7E+02 0.0059 29.7 10.0 71 94-164 729-811 (984)
421 TIGR01843 type_I_hlyD type I s 38.8 2.9E+02 0.0062 24.7 12.3 17 145-161 250-266 (423)
422 PF08687 ASD2: Apx/Shroom doma 38.8 1.5E+02 0.0032 27.0 7.3 28 103-130 90-117 (264)
423 PF09766 FimP: Fms-interacting 38.8 1.8E+02 0.004 26.9 8.2 39 101-139 103-141 (355)
424 PLN03188 kinesin-12 family pro 38.8 1E+02 0.0023 33.8 7.3 43 115-157 1175-1241(1320)
425 PF12777 MT: Microtubule-bindi 38.7 2.8E+02 0.0061 25.3 9.3 54 107-160 229-282 (344)
426 PF05622 HOOK: HOOK protein; 38.7 10 0.00022 37.9 0.0 34 102-135 321-354 (713)
427 PF14257 DUF4349: Domain of un 38.5 1.5E+02 0.0033 25.7 7.2 54 110-163 136-191 (262)
428 PRK11448 hsdR type I restricti 38.5 1.4E+02 0.003 32.2 8.1 37 102-138 173-209 (1123)
429 PF06548 Kinesin-related: Kine 38.5 1.4E+02 0.0029 29.5 7.4 42 116-157 406-471 (488)
430 KOG4674 Uncharacterized conser 38.5 2.6E+02 0.0056 32.1 10.3 47 115-161 117-163 (1822)
431 TIGR02680 conserved hypothetic 38.2 5.1E+02 0.011 28.4 12.4 11 106-116 882-892 (1353)
432 PRK11281 hypothetical protein; 38.1 4E+02 0.0088 28.9 11.4 47 84-130 159-216 (1113)
433 KOG4603 TBP-1 interacting prot 37.9 2.8E+02 0.006 24.3 8.8 25 138-162 120-144 (201)
434 PF04871 Uso1_p115_C: Uso1 / p 37.8 2.2E+02 0.0047 23.0 11.8 64 95-158 51-115 (136)
435 KOG0018 Structural maintenance 37.7 3.9E+02 0.0085 29.1 11.1 72 90-161 407-478 (1141)
436 TIGR02680 conserved hypothetic 37.7 3E+02 0.0065 30.1 10.6 63 104-166 267-329 (1353)
437 KOG2077 JNK/SAPK-associated pr 37.6 1.2E+02 0.0026 31.1 7.1 47 107-153 330-376 (832)
438 PF14915 CCDC144C: CCDC144C pr 37.2 2.1E+02 0.0045 26.7 8.1 55 107-161 215-298 (305)
439 PF02994 Transposase_22: L1 tr 37.1 1.4E+02 0.003 27.9 7.1 53 110-162 141-193 (370)
440 PF05600 DUF773: Protein of un 37.1 2.4E+02 0.0053 27.6 9.1 55 102-156 442-497 (507)
441 PF06632 XRCC4: DNA double-str 37.0 3.1E+02 0.0067 25.7 9.4 11 145-155 198-208 (342)
442 KOG0978 E3 ubiquitin ligase in 36.9 2.7E+02 0.0058 28.8 9.5 58 97-154 564-621 (698)
443 cd07599 BAR_Rvs167p The Bin/Am 36.8 2.6E+02 0.0055 23.5 8.9 62 99-160 117-186 (216)
444 COG4985 ABC-type phosphate tra 36.8 1.5E+02 0.0032 27.2 6.9 56 106-161 186-241 (289)
445 PF14077 WD40_alt: Alternative 36.8 39 0.00084 23.4 2.6 21 106-126 18-38 (48)
446 PRK11519 tyrosine kinase; Prov 36.6 3.3E+02 0.0072 27.4 10.1 29 93-121 261-289 (719)
447 PF05557 MAD: Mitotic checkpoi 36.5 76 0.0016 31.8 5.7 43 125-167 501-543 (722)
448 COG1340 Uncharacterized archae 36.5 3.5E+02 0.0076 25.1 12.8 72 87-158 28-100 (294)
449 PF13874 Nup54: Nucleoporin co 36.3 1.6E+02 0.0035 23.5 6.6 49 113-161 72-120 (141)
450 KOG0996 Structural maintenance 36.3 5E+02 0.011 28.7 11.6 70 92-161 521-590 (1293)
451 PF14712 Snapin_Pallidin: Snap 36.3 1.7E+02 0.0036 21.3 8.3 30 108-137 16-45 (92)
452 PF08826 DMPK_coil: DMPK coile 36.2 1.6E+02 0.0035 21.0 9.5 34 106-139 25-58 (61)
453 PF06810 Phage_GP20: Phage min 36.0 2.5E+02 0.0054 23.1 8.1 13 131-143 55-67 (155)
454 KOG2391 Vacuolar sorting prote 36.0 3.9E+02 0.0084 25.5 9.8 55 104-161 230-284 (365)
455 PF09486 HrpB7: Bacterial type 35.9 2.6E+02 0.0057 23.4 8.8 32 129-160 81-112 (158)
456 PRK00409 recombination and DNA 35.5 5.2E+02 0.011 26.7 12.5 8 89-96 520-527 (782)
457 KOG0976 Rho/Rac1-interacting s 35.3 2.2E+02 0.0048 30.5 8.7 16 19-34 20-35 (1265)
458 KOG0249 LAR-interacting protei 35.2 3.8E+02 0.0082 28.3 10.2 41 115-155 218-258 (916)
459 PF07889 DUF1664: Protein of u 35.2 2.4E+02 0.0053 22.8 8.2 43 119-161 60-102 (126)
460 PRK14160 heat shock protein Gr 35.1 2.2E+02 0.0048 25.0 7.7 24 109-132 71-94 (211)
461 KOG0999 Microtubule-associated 35.0 1.7E+02 0.0037 29.9 7.7 41 116-156 152-192 (772)
462 PRK09413 IS2 repressor TnpA; R 34.6 1E+02 0.0022 23.8 5.0 23 111-133 76-98 (121)
463 PF06424 PRP1_N: PRP1 splicing 34.5 32 0.0007 28.2 2.3 32 108-139 85-116 (133)
464 PF08912 Rho_Binding: Rho Bind 34.3 1.9E+02 0.0041 21.3 6.7 33 111-143 1-33 (69)
465 PRK11239 hypothetical protein; 34.3 76 0.0017 28.1 4.7 17 138-154 194-210 (215)
466 TIGR00219 mreC rod shape-deter 34.3 2.3E+02 0.005 25.4 7.9 40 121-160 67-110 (283)
467 PF06216 RTBV_P46: Rice tungro 34.2 2.5E+02 0.0055 26.1 8.1 31 131-161 82-112 (389)
468 KOG1937 Uncharacterized conser 34.1 3.7E+02 0.008 26.7 9.6 70 81-150 408-518 (521)
469 PF10174 Cast: RIM-binding pro 34.1 5.7E+02 0.012 26.7 12.0 54 104-157 355-408 (775)
470 cd07429 Cby_like Chibby, a nuc 34.0 1E+02 0.0022 24.5 4.9 21 114-134 80-100 (108)
471 PF11500 Cut12: Spindle pole b 33.9 2.9E+02 0.0062 23.2 8.9 52 81-132 80-131 (152)
472 KOG2189 Vacuolar H+-ATPase V0 33.9 3.1E+02 0.0067 28.9 9.4 21 104-124 54-74 (829)
473 PLN02678 seryl-tRNA synthetase 33.9 4.5E+02 0.0097 25.5 11.3 20 141-160 78-97 (448)
474 PF05852 DUF848: Gammaherpesvi 33.9 2.8E+02 0.0061 23.1 8.6 45 110-154 58-102 (146)
475 PRK03947 prefoldin subunit alp 33.7 1.7E+02 0.0036 23.0 6.2 29 110-138 105-133 (140)
476 PF05812 Herpes_BLRF2: Herpesv 33.7 64 0.0014 26.1 3.8 21 130-150 6-26 (118)
477 PF04375 HemX: HemX; InterPro 33.7 3.4E+02 0.0074 25.1 9.1 43 111-153 91-135 (372)
478 KOG2264 Exostosin EXT1L [Signa 33.7 5.2E+02 0.011 26.8 10.7 72 85-156 79-150 (907)
479 PF14775 NYD-SP28_assoc: Sperm 33.3 1.7E+02 0.0038 20.6 7.6 47 106-152 12-58 (60)
480 cd07596 BAR_SNX The Bin/Amphip 33.3 2.6E+02 0.0055 22.5 11.5 72 85-159 110-188 (218)
481 PRK11281 hypothetical protein; 33.1 2.5E+02 0.0054 30.4 9.0 75 87-161 252-326 (1113)
482 PF05082 Rop-like: Rop-like; 33.1 1.9E+02 0.0042 21.1 8.2 54 108-161 4-64 (66)
483 PHA02109 hypothetical protein 33.0 1.4E+02 0.0031 26.2 6.0 39 104-142 191-229 (233)
484 PF05103 DivIVA: DivIVA protei 33.0 35 0.00077 26.0 2.2 53 109-161 21-73 (131)
485 KOG0964 Structural maintenance 32.9 4.7E+02 0.01 28.6 10.7 73 88-160 400-472 (1200)
486 KOG0249 LAR-interacting protei 32.9 2.9E+02 0.0063 29.1 9.0 58 102-159 202-262 (916)
487 PRK10722 hypothetical protein; 32.9 3E+02 0.0065 24.9 8.3 53 108-160 146-202 (247)
488 PF07246 Phlebovirus_NSM: Phle 32.6 3.7E+02 0.0081 24.6 8.9 76 85-161 151-229 (264)
489 PF13874 Nup54: Nucleoporin co 32.6 1.8E+02 0.0039 23.3 6.3 57 105-161 64-120 (141)
490 COG1382 GimC Prefoldin, chaper 32.6 2.3E+02 0.0051 22.9 6.8 47 123-169 73-119 (119)
491 PF09766 FimP: Fms-interacting 32.5 2.9E+02 0.0063 25.6 8.5 52 109-160 90-141 (355)
492 PF04420 CHD5: CHD5-like prote 32.4 2.1E+02 0.0045 23.5 6.8 51 110-160 37-99 (161)
493 PF10205 KLRAQ: Predicted coil 32.4 2.5E+02 0.0054 22.1 8.7 53 105-157 18-70 (102)
494 COG3264 Small-conductance mech 32.4 1.8E+02 0.0039 30.6 7.6 57 105-161 71-127 (835)
495 PF07047 OPA3: Optic atrophy 3 32.4 96 0.0021 24.8 4.7 37 92-128 98-134 (134)
496 PF00435 Spectrin: Spectrin re 32.3 1.7E+02 0.0036 20.0 8.8 56 106-161 34-93 (105)
497 PF12737 Mating_C: C-terminal 32.2 48 0.001 31.9 3.3 21 101-121 397-417 (419)
498 PRK09973 putative outer membra 32.1 2.3E+02 0.005 21.6 7.4 47 107-153 25-71 (85)
499 PRK01885 greB transcription el 32.0 2.4E+02 0.0051 23.2 7.0 55 108-162 12-75 (157)
500 PRK04778 septation ring format 31.8 5E+02 0.011 25.4 10.5 78 84-161 354-431 (569)
No 1
>smart00338 BRLZ basic region leucin zipper.
Probab=99.44 E-value=9.3e-13 Score=93.01 Aligned_cols=62 Identities=35% Similarity=0.516 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 82 IDERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQEN 143 (201)
Q Consensus 82 ~deRR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN 143 (201)
.|+|+.||+++||+||++||.||++|+.+|+.+|..|..+|..|..++..|..++..+..+|
T Consensus 2 ~~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 2 EDEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46799999999999999999999999999999999999999999999987766555555444
No 2
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=99.42 E-value=1.5e-12 Score=114.67 Aligned_cols=82 Identities=30% Similarity=0.401 Sum_probs=79.3
Q ss_pred cchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 80 RIIDERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTE 159 (201)
Q Consensus 80 ~~~deRR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~ 159 (201)
-.-|||-+|||++||.+|+.+|.|||++++++|.+|..|..||+.|+.+++.|++..+.|..+|.+|+.++..+++.|..
T Consensus 64 LS~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~ 143 (292)
T KOG4005|consen 64 LSWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAE 143 (292)
T ss_pred cCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hh
Q 043159 160 LQ 161 (201)
Q Consensus 160 l~ 161 (201)
++
T Consensus 144 ~~ 145 (292)
T KOG4005|consen 144 LK 145 (292)
T ss_pred hH
Confidence 87
No 3
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=99.40 E-value=2.6e-12 Score=90.55 Aligned_cols=62 Identities=35% Similarity=0.544 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 83 DERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENA 144 (201)
Q Consensus 83 deRR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~ 144 (201)
+.++.+|+++||+||++||.||++++.+|+.+|..|..+|..|..++..|...+..|..+|.
T Consensus 3 ~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~~ 64 (64)
T PF00170_consen 3 EDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSENH 64 (64)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 56789999999999999999999999999999999999999999999999888888888773
No 4
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=99.27 E-value=7.9e-12 Score=119.65 Aligned_cols=70 Identities=33% Similarity=0.400 Sum_probs=65.4
Q ss_pred chHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 81 IIDERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEA 150 (201)
Q Consensus 81 ~~deRR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael 150 (201)
+.--||+.|||+|||||..||+|||+|+..||.++..|..||+.|+.++..|++++..++.||..||--.
T Consensus 277 ~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~kvps 346 (655)
T KOG4343|consen 277 IKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLKVPS 346 (655)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccccCC
Confidence 4456788899999999999999999999999999999999999999999999999999999999997543
No 5
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=99.16 E-value=2.7e-10 Score=78.30 Aligned_cols=52 Identities=38% Similarity=0.564 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 82 IDERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSE 134 (201)
Q Consensus 82 ~deRR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~ 134 (201)
.++++.||. +||+||++||.||++++.+|+.+|..|..+|..|..++..|..
T Consensus 2 ~~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 2 DEEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp CHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 367788888 9999999999999999999999999999999999988887754
No 6
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=98.97 E-value=9.8e-10 Score=103.79 Aligned_cols=72 Identities=28% Similarity=0.378 Sum_probs=63.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 83 DERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 83 deRR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
.-||.||||+|++||+.||+|||.|++.||.+|.....||++|.+++.. ++.+|..|-+++.+|+.++....
T Consensus 249 iLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~-------Le~~N~sLl~qL~klQt~v~q~a 320 (472)
T KOG0709|consen 249 ILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEE-------LELSNRSLLAQLKKLQTLVIQVA 320 (472)
T ss_pred HHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHH-------HhhccHHHHHHHHHHHHHHhhcc
Confidence 4478999999999999999999999999999999999999999888775 57788888888888887775543
No 7
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=98.94 E-value=2.5e-09 Score=96.68 Aligned_cols=53 Identities=30% Similarity=0.488 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 83 DERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSES 135 (201)
Q Consensus 83 deRR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~ 135 (201)
..||+-|+.||||+||.+|+|||+|+.-||.+|..|+.+|..|..+|..|++-
T Consensus 289 trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKeL 341 (348)
T KOG3584|consen 289 TRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKEL 341 (348)
T ss_pred hhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHHH
Confidence 45778899999999999999999999999999999999999999999988763
No 8
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=98.17 E-value=2.6e-08 Score=75.15 Aligned_cols=56 Identities=29% Similarity=0.455 Sum_probs=46.5
Q ss_pred chHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 81 IIDERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESH 136 (201)
Q Consensus 81 ~~deRR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~ 136 (201)
..+-|..||.++||.+|+.||.||..++.+|+.++..|+.+...|..++..+....
T Consensus 26 ~~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e~ 81 (92)
T PF03131_consen 26 IAELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQER 81 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34668899999999999999999999999999999988887777766666554433
No 9
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=97.93 E-value=3.4e-05 Score=69.10 Aligned_cols=47 Identities=30% Similarity=0.472 Sum_probs=40.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 87 QRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVS 133 (201)
Q Consensus 87 ~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~ 133 (201)
.|..++|||+|.+||.||.+||..||.+|..|..+|..|...+..|.
T Consensus 208 eRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~ 254 (279)
T KOG0837|consen 208 ERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLK 254 (279)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHH
Confidence 44478999999999999999999999999999999988777666443
No 10
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=97.91 E-value=6.4e-05 Score=68.11 Aligned_cols=55 Identities=25% Similarity=0.355 Sum_probs=45.0
Q ss_pred chHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 81 IIDERKQRR-MISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSES 135 (201)
Q Consensus 81 ~~deRR~RR-~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~ 135 (201)
..++|+.|| .+.|..+|-|.|+||++..+.|+.++..|+.+|++|+.++..+.++
T Consensus 222 ~~~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerE 277 (294)
T KOG4571|consen 222 KTPEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELERE 277 (294)
T ss_pred CCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666555 4556666999999999999999999999999999999988865543
No 11
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=97.61 E-value=0.0008 Score=54.91 Aligned_cols=68 Identities=26% Similarity=0.396 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 82 IDERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 82 ~deRR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
+--|.+||-++||--|.-+|.|+-.+-.+||.+-..|.++... |..||.+++.++..++.++..+.
T Consensus 50 vrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~--------------L~~e~s~~~~E~da~k~k~e~l~ 115 (135)
T KOG4196|consen 50 VRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEK--------------LKEENSRLRRELDAYKSKYEALQ 115 (135)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346788999999999999999999888888776655554443 45577777778888888887777
Q ss_pred cC
Q 043159 162 LS 163 (201)
Q Consensus 162 ~~ 163 (201)
..
T Consensus 116 ~~ 117 (135)
T KOG4196|consen 116 NS 117 (135)
T ss_pred hh
Confidence 43
No 12
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=97.39 E-value=0.00077 Score=59.96 Aligned_cols=51 Identities=27% Similarity=0.419 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 83 DERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVS 133 (201)
Q Consensus 83 deRR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~ 133 (201)
+.+=..|..+|=++|||||.+.+...++++.+|..|+.||..|+.++..|+
T Consensus 192 ~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~ 242 (269)
T KOG3119|consen 192 DPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLK 242 (269)
T ss_pred CHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445666899999999999999999999999999999998887766543
No 13
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=96.54 E-value=0.018 Score=45.23 Aligned_cols=53 Identities=34% Similarity=0.542 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043159 110 ELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQL 162 (201)
Q Consensus 110 eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~~ 162 (201)
+|-.++..|+..-..|..+++.|+.....|..||..|+-+...||.+|..+..
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455666666666667777777777777777888888888888888877653
No 14
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=96.52 E-value=0.036 Score=40.74 Aligned_cols=54 Identities=28% Similarity=0.457 Sum_probs=32.4
Q ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159 107 HLDELWSHVVR-------LRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 107 ~l~eLe~qV~~-------L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l 160 (201)
-++.|+.+|.. |+.++..|+.++..+......|..||..|+.+-.....+|..+
T Consensus 5 ~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~L 65 (72)
T PF06005_consen 5 LLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666655 4445555555555555556677777777777766666666543
No 15
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=96.50 E-value=0.03 Score=40.68 Aligned_cols=52 Identities=19% Similarity=0.164 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159 109 DELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 109 ~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l 160 (201)
..|+.+|++|-..-++|+.++..|.++...+..|+..|.++...-|.+|..|
T Consensus 3 ~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEam 54 (65)
T TIGR02449 3 QALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAM 54 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444455555555555555555554444
No 16
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=96.43 E-value=0.0072 Score=59.62 Aligned_cols=69 Identities=23% Similarity=0.298 Sum_probs=54.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159 85 RKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 85 RR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l 160 (201)
|=.||.=+||.||+++|+||-.-|..||.+|..|+.+.++|+++-..+.. +=.+++.++..|-+.+...
T Consensus 490 rDIRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~~~d~-------~L~~~kqqls~L~~~Vf~~ 558 (604)
T KOG3863|consen 490 RDIRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERDELDS-------TLGVMKQQLSELYQEVFQQ 558 (604)
T ss_pred hccccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 34578889999999999999999999999999999999998887665433 3345566677766655443
No 17
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=96.26 E-value=0.028 Score=44.16 Aligned_cols=50 Identities=32% Similarity=0.406 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQ 155 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~ 155 (201)
..+.+|+.++..|-.+-..|+..+..|.++...|..||..||..+.++.+
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46889999999999999999999999999999999999999999999877
No 18
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=96.20 E-value=0.059 Score=39.16 Aligned_cols=56 Identities=21% Similarity=0.340 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
+.++.|-..+.+|+.||..|+.++..+...-..+...|..=+.++.++-.+|..|.
T Consensus 7 ~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~le 62 (65)
T TIGR02449 7 AQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 56889999999999999999999999999999999999999999999999998875
No 19
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=96.16 E-value=0.078 Score=38.98 Aligned_cols=53 Identities=19% Similarity=0.240 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLT 158 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~ 158 (201)
.-+.-|..+|+.|+.+|..|..+...|...+..+..|=.....++..|=.+|.
T Consensus 18 eti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~ 70 (72)
T PF06005_consen 18 ETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKLE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34566777777777777777777777777777777776666666666555543
No 20
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=96.16 E-value=0.039 Score=43.68 Aligned_cols=51 Identities=29% Similarity=0.432 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159 110 ELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 110 eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l 160 (201)
+|=.+|..|+..-..|..+++.|+.....+..||..|+.+-..||.+|..+
T Consensus 5 elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 5 EIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555666666666666666666666677777777777777777777765
No 21
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=96.07 E-value=0.038 Score=43.75 Aligned_cols=50 Identities=28% Similarity=0.316 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQ 155 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~ 155 (201)
..+..|+.++..+-.+-..|+..+..|.+++..|..||..||..+.++..
T Consensus 8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~ 57 (110)
T PRK13169 8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELEA 57 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 46889999999999999999999999999999999999999999999844
No 22
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.96 E-value=0.067 Score=39.91 Aligned_cols=54 Identities=20% Similarity=0.361 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 108 LDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 108 l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
+.-|.-+|+.|+..|..|..+...++.....|+.||..|+.+-...+.+|..+-
T Consensus 20 I~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLL 73 (79)
T COG3074 20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALL 73 (79)
T ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666888999999999999999999999999999999999998888887764
No 23
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=95.94 E-value=0.066 Score=40.38 Aligned_cols=53 Identities=19% Similarity=0.339 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 109 DELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 109 ~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
.-|.-+|+.|+.+|..|..++..+......|..||..|+.+...+..+|..|=
T Consensus 21 ~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LL 73 (79)
T PRK15422 21 TLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL 73 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777777777777777777789999999999988888887663
No 24
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.87 E-value=0.036 Score=37.38 Aligned_cols=42 Identities=24% Similarity=0.420 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 117 RLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLT 158 (201)
Q Consensus 117 ~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~ 158 (201)
+|+.+-..|+...+.|...++.|..||..|++++..|..+|.
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 466677778888888888888888899999999988887764
No 25
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=95.34 E-value=0.099 Score=41.72 Aligned_cols=50 Identities=28% Similarity=0.413 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 110 ELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTE 159 (201)
Q Consensus 110 eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~ 159 (201)
++=.+|..|+...-.|.++++.+++.+..+..||..|+-+...||.+|..
T Consensus 5 eiFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 5 EIFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 34456667777777778888888888888999999999999999999887
No 26
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=95.23 E-value=0.26 Score=35.94 Aligned_cols=56 Identities=29% Similarity=0.353 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159 105 QRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 105 q~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l 160 (201)
+.+++-+..++.....+|..|..+-.....++...-.+|..|++++..|+..|...
T Consensus 11 r~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 11 RNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677788888888888888888887777778888888888888888888877653
No 27
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=94.86 E-value=0.26 Score=36.40 Aligned_cols=54 Identities=30% Similarity=0.415 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 108 LDELWSHVVRLRTENHNLIDKLNHVSESHD--------RVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 108 l~eLe~qV~~L~~EN~~L~~el~~L~~~~~--------~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
+.+.+.+++.|+.||=.|+-++-.|.+... .+..||..|+.++..|++.|...+
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~ 63 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKK 63 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999998887755 468899999999999998887765
No 28
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.85 E-value=0.89 Score=38.22 Aligned_cols=72 Identities=19% Similarity=0.141 Sum_probs=48.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 84 ERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQ 155 (201)
Q Consensus 84 eRR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~ 155 (201)
.++.+.....+.+-+.-.......+.++..-+..|..|...|.-++..+.+++..+..||..|-.+.++...
T Consensus 115 ~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k~ 186 (194)
T PF08614_consen 115 ERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQRKA 186 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555566666777777777777777777777777777788888888877777665443
No 29
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.83 E-value=1 Score=44.48 Aligned_cols=77 Identities=17% Similarity=0.321 Sum_probs=59.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 85 RKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 85 RR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
|....+++-..........-+.+++.|+.++...+.++..|..+...+......+..|+..|..+..+++.++..+.
T Consensus 150 kE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LE 226 (546)
T PF07888_consen 150 KEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELE 226 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445667777777777777888888888888888888888888888887777888888888877777777776665
No 30
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=94.74 E-value=0.26 Score=41.65 Aligned_cols=47 Identities=19% Similarity=0.289 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159 114 HVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 114 qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l 160 (201)
....+..||..|..++..|+.++..|..||..|..++..+..-...|
T Consensus 98 ~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L 144 (161)
T TIGR02894 98 SDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTL 144 (161)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888888888888888888888877776655544
No 31
>PRK10884 SH3 domain-containing protein; Provisional
Probab=94.69 E-value=0.37 Score=41.69 Aligned_cols=43 Identities=16% Similarity=0.126 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLRE 148 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lra 148 (201)
+.+++++.++..|+.+|++|..++..++.+.+.+.++|..++.
T Consensus 125 ~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 125 QKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555555444444444444444443
No 32
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=94.27 E-value=0.15 Score=49.38 Aligned_cols=54 Identities=19% Similarity=0.146 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 105 QRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLT 158 (201)
Q Consensus 105 q~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~ 158 (201)
+..+.+||.+++.|+.|.+.+.++...+.+++..++.||..|++++..+...+.
T Consensus 75 Q~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~~~ 128 (475)
T PRK13729 75 QVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGANPV 128 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 447889999999999999999999999999999999999999999976665543
No 33
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=93.66 E-value=2.4 Score=33.95 Aligned_cols=77 Identities=18% Similarity=0.283 Sum_probs=58.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 85 RKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 85 RR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
....|=..-||..-....++...++.|...+..|+.++..+..++..+..+...+..++..+...+...+..+..+.
T Consensus 45 ~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk 121 (151)
T PF11559_consen 45 QQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLK 121 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667788888888888888999999998888888888888888777777777777666666666665555554
No 34
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=93.65 E-value=0.44 Score=41.29 Aligned_cols=54 Identities=35% Similarity=0.444 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 108 LDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 108 l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
..+|-..|+.|+.-|+.|..++..|......++..|+.|..++.+|+..+..++
T Consensus 3 t~dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Q 56 (193)
T PF14662_consen 3 TSDLLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQ 56 (193)
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357778888899999999999998888888889999999999999998888876
No 35
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=93.37 E-value=0.71 Score=41.68 Aligned_cols=75 Identities=23% Similarity=0.298 Sum_probs=56.7
Q ss_pred chHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 81 IIDERKQRRMIS-----NRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQ 155 (201)
Q Consensus 81 ~~deRR~RR~ls-----NRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~ 155 (201)
..+.||.+-.+. .|.-||-+.+ ...+.+|+.+-..|+.||+.|+.....|..+.+.+..+=..|++++++|.+
T Consensus 69 K~~RrKLKNRVAAQtaRDrKKaRm~em--e~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~ 146 (292)
T KOG4005|consen 69 KVQRRKLKNRVAAQTARDRKKARMEEM--EYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQ 146 (292)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHH
Confidence 456666663332 3333332222 345789999999999999999999999999999999999999999999876
Q ss_pred HH
Q 043159 156 ML 157 (201)
Q Consensus 156 ~L 157 (201)
.-
T Consensus 147 ~~ 148 (292)
T KOG4005|consen 147 QQ 148 (292)
T ss_pred HH
Confidence 53
No 36
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.22 E-value=2.3 Score=36.83 Aligned_cols=52 Identities=8% Similarity=0.058 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQML 157 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L 157 (201)
++..+|..+++.+..+...|..++..|++++..+..|+..|++++..++..+
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666666666666666666666666666666666666666555433
No 37
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=93.19 E-value=0.65 Score=43.66 Aligned_cols=63 Identities=21% Similarity=0.249 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 99 RSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 99 RSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
--=+|-+.+...||.-+.+++.||+.|..+++.+.+++...+.|+..|..|+++-.+..+.++
T Consensus 120 ~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~ 182 (401)
T PF06785_consen 120 EVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELN 182 (401)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888999999999999999999999999999999999999888877666666665
No 38
>PRK02119 hypothetical protein; Provisional
Probab=93.18 E-value=2 Score=31.44 Aligned_cols=50 Identities=12% Similarity=0.052 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043159 106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQL 162 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~~ 162 (201)
+++.+||.++...+.....|-..+.. -..+-..|+.++..|..+|.++..
T Consensus 9 ~Ri~~LE~rla~QE~tie~LN~~v~~-------Qq~~id~L~~ql~~L~~rl~~~~~ 58 (73)
T PRK02119 9 NRIAELEMKIAFQENLLEELNQALIE-------QQFVIDKMQVQLRYMANKLKDMQP 58 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45666666666666655555554443 344446677788888888888763
No 39
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=93.16 E-value=0.88 Score=34.38 Aligned_cols=55 Identities=15% Similarity=0.172 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 107 HLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 107 ~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
-++.||.+|...-....-|+-+++.|+++...+..|+..++..-.+|.+.-..++
T Consensus 5 vleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk 59 (79)
T PRK15422 5 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLK 59 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4688999999999999999999999999999999988887776666666665554
No 40
>PRK04406 hypothetical protein; Provisional
Probab=93.10 E-value=2.3 Score=31.40 Aligned_cols=49 Identities=2% Similarity=0.080 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043159 107 HLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQL 162 (201)
Q Consensus 107 ~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~~ 162 (201)
++.+||.++..++.-.. .|.+....-..+-..|+.++..|..+|..+..
T Consensus 12 Ri~~LE~~lAfQE~tIe-------~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~~ 60 (75)
T PRK04406 12 RINDLECQLAFQEQTIE-------ELNDALSQQQLLITKMQDQMKYVVGKVKNMDS 60 (75)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45555555555555444 44444444455557788889999999988874
No 41
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=93.10 E-value=0.89 Score=40.87 Aligned_cols=56 Identities=29% Similarity=0.310 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159 105 QRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 105 q~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l 160 (201)
+..++++..+-..|..++..|..+++.+++.+.+++.||++|.+.+..|-..+.++
T Consensus 141 kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L 196 (290)
T COG4026 141 KEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDL 196 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHH
Confidence 45577777777888888888888888999999999999999988765544443333
No 42
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=92.92 E-value=0.93 Score=34.14 Aligned_cols=45 Identities=24% Similarity=0.437 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 109 DELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDL 153 (201)
Q Consensus 109 ~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~L 153 (201)
++|..++..|+..-..|..++..+++.+..|..||..|..=+..|
T Consensus 19 ~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 19 EELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888888888888888888888888888777777
No 43
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=92.84 E-value=1.6 Score=34.70 Aligned_cols=45 Identities=13% Similarity=0.204 Sum_probs=19.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 92 SNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESH 136 (201)
Q Consensus 92 sNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~ 136 (201)
.-.|...-|+..=.+.-++|+..+..|+.++...-.++..|..++
T Consensus 23 ~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki 67 (107)
T PF09304_consen 23 RSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKI 67 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444443344444444444444444444444444443333
No 44
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=92.83 E-value=0.55 Score=37.56 Aligned_cols=47 Identities=26% Similarity=0.309 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASD 152 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~ 152 (201)
..+.+|+.++..|-++...|+..+..+.++...|.-||..||.++.+
T Consensus 8 d~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 8 DQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 46889999999999999999999999999999999999999999988
No 45
>PRK04325 hypothetical protein; Provisional
Probab=92.50 E-value=2.5 Score=31.01 Aligned_cols=49 Identities=14% Similarity=0.043 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043159 107 HLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQL 162 (201)
Q Consensus 107 ~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~~ 162 (201)
++.+||.++..++.....|-..+..-. .+-..|+.++..|..+|.++..
T Consensus 10 Ri~~LE~klAfQE~tIe~LN~vv~~Qq-------~~I~~L~~ql~~L~~rl~~~~~ 58 (74)
T PRK04325 10 RITELEIQLAFQEDLIDGLNATVARQQ-------QTLDLLQAQLRLLYQQMRDANP 58 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhcc
Confidence 477777777777766666655554433 3446677788888888888864
No 46
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=92.37 E-value=0.36 Score=43.26 Aligned_cols=36 Identities=36% Similarity=0.417 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 043159 113 SHVVRLRTENHNLIDKLNHVSESHD----RVLQENARLRE 148 (201)
Q Consensus 113 ~qV~~L~~EN~~L~~el~~L~~~~~----~l~~EN~~Lra 148 (201)
..+..|..||++|+.++..+..+.. .+..||.+||+
T Consensus 66 ~~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~ 105 (283)
T TIGR00219 66 KDVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRE 105 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677888888888776644333 26666766666
No 47
>smart00340 HALZ homeobox associated leucin zipper.
Probab=92.37 E-value=0.35 Score=32.74 Aligned_cols=28 Identities=25% Similarity=0.443 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 128 KLNHVSESHDRVLQENARLREEASDLRQ 155 (201)
Q Consensus 128 el~~L~~~~~~l~~EN~~Lrael~~Lr~ 155 (201)
..+.|++.|..|..||++|+.++.+||+
T Consensus 6 dCe~LKrcce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 6 DCELLKRCCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567889999999999999999999985
No 48
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=92.17 E-value=2.3 Score=34.13 Aligned_cols=58 Identities=17% Similarity=0.205 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 102 MRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTE 159 (201)
Q Consensus 102 ~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~ 159 (201)
.+-+..++.|+.+++.++.+...+..+...+..++..+..-+..+++++..+...+..
T Consensus 69 ~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~ 126 (151)
T PF11559_consen 69 ERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQ 126 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555555555555555555544443
No 49
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=92.05 E-value=9.7 Score=34.96 Aligned_cols=86 Identities=24% Similarity=0.361 Sum_probs=68.2
Q ss_pred hhcchHHHHHHHHHHhH-----HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 78 QLRIIDERKQRRMISNR-----ESARRSRMRK-QRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEAS 151 (201)
Q Consensus 78 ~~~~~deRR~RR~lsNR-----ESARRSR~RK-q~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~ 151 (201)
.+...++|=++-|++|- .++-....-- +..|++|+..+.+++.+......+++.+++.++.+..|-..|++++.
T Consensus 85 ~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~ 164 (302)
T PF09738_consen 85 SLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLK 164 (302)
T ss_pred HHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777788899875 3444444444 57788899999999999988888899999999999999999999998
Q ss_pred HHHHHHHHhhcC
Q 043159 152 DLRQMLTELQLS 163 (201)
Q Consensus 152 ~Lr~~L~~l~~~ 163 (201)
..-..|..-++.
T Consensus 165 ~rdeli~khGlV 176 (302)
T PF09738_consen 165 QRDELIEKHGLV 176 (302)
T ss_pred HHHHHHHHCCee
Confidence 888888887754
No 50
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=91.91 E-value=1.1 Score=32.20 Aligned_cols=49 Identities=24% Similarity=0.287 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
+++.+||.++..++.....|-..+..-.+.++ .|+.++..|..+|.++.
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~-------~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQID-------RLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhc
Confidence 57888888888888877777776665555444 45556666666776666
No 51
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=91.87 E-value=2.8 Score=42.35 Aligned_cols=53 Identities=21% Similarity=0.207 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhh
Q 043159 109 DELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREE-------ASDLRQMLTELQ 161 (201)
Q Consensus 109 ~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrae-------l~~Lr~~L~~l~ 161 (201)
+-+..+..+|+.|-..|+.++....+++..++.|...||.. .+.|-..|..|+
T Consensus 541 e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amq 600 (697)
T PF09726_consen 541 ESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQ 600 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 34566667777777777777777777777777766655542 344444455554
No 52
>PRK00846 hypothetical protein; Provisional
Probab=91.81 E-value=3.4 Score=30.93 Aligned_cols=51 Identities=22% Similarity=0.110 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 043159 106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQLS 163 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~~~ 163 (201)
+++++||.++...+.-...| .+.......+-..|+.++..|..+|.+++..
T Consensus 13 ~Ri~~LE~rlAfQe~tIe~L-------N~~v~~qq~~I~~L~~ql~~L~~rL~~~~~s 63 (77)
T PRK00846 13 ARLVELETRLSFQEQALTEL-------SEALADARLTGARNAELIRHLLEDLGKVRST 63 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45566666666555544444 4444445556777888999999999999843
No 53
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.54 E-value=0.77 Score=30.90 Aligned_cols=39 Identities=26% Similarity=0.324 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043159 124 NLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQL 162 (201)
Q Consensus 124 ~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~~ 162 (201)
+|....+.|+..++.|.++|..|..+...|+..+..+..
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~ 40 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKE 40 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888999999999999999999999998888763
No 54
>PRK02793 phi X174 lysis protein; Provisional
Probab=91.31 E-value=4.4 Score=29.56 Aligned_cols=51 Identities=25% Similarity=0.138 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 043159 106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQLS 163 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~~~ 163 (201)
+++.+||.++...+.-...|-.-+... ..+-..|..++..|..+|.++...
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Q-------q~~I~~L~~~l~~L~~rl~~~~~~ 58 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAH-------EMEMAKLRDHLRLLTEKLKASQPS 58 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhccc
Confidence 467777777777776666655554443 334467777888888888887643
No 55
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=91.24 E-value=5.2 Score=30.29 Aligned_cols=75 Identities=19% Similarity=0.294 Sum_probs=62.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 84 ERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLT 158 (201)
Q Consensus 84 eRR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~ 158 (201)
.++..+.+.+=|++=..|.-+.....+++.+|..|......|-.++......+..++.-|.++..++...-..|.
T Consensus 10 l~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir 84 (89)
T PF13747_consen 10 LTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIR 84 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777788888887777777777799999999999999999999999999999999999888888766555444
No 56
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=91.23 E-value=1.7 Score=35.51 Aligned_cols=55 Identities=25% Similarity=0.399 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043159 108 LDELWSHVVRLRTENHNLIDKLNHVSES--HDRVLQENARLREEASDLRQMLTELQL 162 (201)
Q Consensus 108 l~eLe~qV~~L~~EN~~L~~el~~L~~~--~~~l~~EN~~Lrael~~Lr~~L~~l~~ 162 (201)
+.+|..++..|+.+...|..++..|... ...+..+-..|+.++..|..+|..+..
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5556666666666666666666666543 456666777777777777777777774
No 57
>PF15294 Leu_zip: Leucine zipper
Probab=90.93 E-value=1.2 Score=40.52 Aligned_cols=51 Identities=22% Similarity=0.389 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 111 LWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 111 Le~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
|..++..|+.||..|+.++..+...+..+..|+..|..++.+|+.......
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~ 180 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQK 180 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 788999999999999999999999999999999999999999999666555
No 58
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=90.86 E-value=3.9 Score=35.48 Aligned_cols=59 Identities=12% Similarity=0.160 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 99 RSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQML 157 (201)
Q Consensus 99 RSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L 157 (201)
.-+..-.+.+..|..+++.|+..|..|...+....++...+..+-..+......|.-.+
T Consensus 49 ~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m 107 (251)
T PF11932_consen 49 DEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLM 107 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666667777777777777777777666666666666655555544444433
No 59
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=90.79 E-value=0.43 Score=40.34 Aligned_cols=46 Identities=28% Similarity=0.404 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 108 LDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQML 157 (201)
Q Consensus 108 l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L 157 (201)
|+++|.+.++.-..|.-|..+|. +-..|..++++||.|+.+|++.|
T Consensus 2 LeD~EsklN~AIERnalLE~ELd----EKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESELD----EKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 68889999888888888888883 45567778888888888887777
No 60
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=90.67 E-value=0.82 Score=31.95 Aligned_cols=49 Identities=24% Similarity=0.198 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 103 RKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLR 154 (201)
Q Consensus 103 RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr 154 (201)
|+..+|.||+.++..=+ |.. ...-....+.+..+..||..|++++..++
T Consensus 1 kw~~Rl~ELe~klkaer-E~R--~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 1 KWLLRLEELERKLKAER-EAR--SLDRSAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred CHHHHHHHHHHHHHHhH-Hhc--cCCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46677788877665433 111 12234556777788999999999988765
No 61
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=90.67 E-value=2.9 Score=33.52 Aligned_cols=20 Identities=30% Similarity=0.478 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 043159 139 VLQENARLREEASDLRQMLT 158 (201)
Q Consensus 139 l~~EN~~Lrael~~Lr~~L~ 158 (201)
...++.+|+..+.+++..+.
T Consensus 94 K~E~veEL~~Dv~DlK~myr 113 (120)
T PF12325_consen 94 KSEEVEELRADVQDLKEMYR 113 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666665554
No 62
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=90.45 E-value=1.6 Score=42.36 Aligned_cols=53 Identities=23% Similarity=0.373 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHh
Q 043159 108 LDELWSHVVRLRTENHNLIDKLNHVSESHD--------RVLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 108 l~eLe~qV~~L~~EN~~L~~el~~L~~~~~--------~l~~EN~~Lrael~~Lr~~L~~l 160 (201)
+..|..+-+.|..||++|+.+...+.+++. .+..|-..|+.+...++..|.+|
T Consensus 75 ~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l 135 (472)
T TIGR03752 75 LAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQL 135 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666554444333322 22233444444444444444444
No 63
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=90.23 E-value=1.8 Score=35.37 Aligned_cols=52 Identities=25% Similarity=0.286 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 104 KQRHLDELWSHVVRLRTENHNLIDKL--NHVSESHDRVLQENARLREEASDLRQ 155 (201)
Q Consensus 104 Kq~~l~eLe~qV~~L~~EN~~L~~el--~~L~~~~~~l~~EN~~Lrael~~Lr~ 155 (201)
.++.+.+|..++..|+.+-..|...+ ..+......+..|+..|.+++..|+.
T Consensus 84 L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 84 LREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45567777777777777777777765 46667777778888888888877776
No 64
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=90.13 E-value=2.2 Score=31.05 Aligned_cols=49 Identities=27% Similarity=0.309 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 107 HLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQ 155 (201)
Q Consensus 107 ~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~ 155 (201)
++...+.....|..|+.....++..+-..+..|..||..|+.++..++.
T Consensus 20 k~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r~ 68 (69)
T PF14197_consen 20 KNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELRA 68 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4555566777777888888888888778888888888888888776653
No 65
>PRK11637 AmiB activator; Provisional
Probab=90.05 E-value=7.3 Score=36.35 Aligned_cols=65 Identities=12% Similarity=0.184 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 94 RESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLT 158 (201)
Q Consensus 94 RESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~ 158 (201)
....+.....-...+..|+.++..+..+-..+..++..+..++..+..+=..++.++..++..|.
T Consensus 63 i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~ 127 (428)
T PRK11637 63 VRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLA 127 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445556666666666666666666666666666666666665555555555444443
No 66
>PRK00295 hypothetical protein; Provisional
Probab=90.00 E-value=5.7 Score=28.66 Aligned_cols=49 Identities=20% Similarity=0.104 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
+++.+||.++..++.....|-..+..-.+ +-..|+.++..|..+|.++.
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~-------~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQR-------VIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhh
Confidence 45888888888888777766665554433 44667778888888888887
No 67
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=89.50 E-value=4.9 Score=32.18 Aligned_cols=14 Identities=29% Similarity=0.437 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 043159 144 ARLREEASDLRQML 157 (201)
Q Consensus 144 ~~Lrael~~Lr~~L 157 (201)
..|+.++.+|..++
T Consensus 71 ~~L~~el~~l~~ry 84 (120)
T PF12325_consen 71 EELEQELEELQQRY 84 (120)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444333
No 68
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=89.13 E-value=13 Score=31.87 Aligned_cols=15 Identities=13% Similarity=0.180 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q 043159 109 DELWSHVVRLRTENH 123 (201)
Q Consensus 109 ~eLe~qV~~L~~EN~ 123 (201)
+++..++..++..++
T Consensus 87 ~~~r~~l~~~~~~l~ 101 (302)
T PF10186_consen 87 EQKRERLEELRESLE 101 (302)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 69
>PRK02119 hypothetical protein; Provisional
Probab=88.59 E-value=3.6 Score=30.09 Aligned_cols=46 Identities=9% Similarity=0.125 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159 108 LDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 108 l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l 160 (201)
+..++.++..|+....-+..-++.|.. .+.... .++..|++.|..|
T Consensus 4 ~~~~e~Ri~~LE~rla~QE~tie~LN~---~v~~Qq----~~id~L~~ql~~L 49 (73)
T PRK02119 4 QQNLENRIAELEMKIAFQENLLEELNQ---ALIEQQ----FVIDKMQVQLRYM 49 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH----HHHHHHHHHHHHH
Confidence 456777777777766555444443321 223323 3345566666655
No 70
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=88.57 E-value=4 Score=35.69 Aligned_cols=34 Identities=38% Similarity=0.483 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 043159 116 VRLRTENHNLIDKLNHVSESH---DRVLQENARLREE 149 (201)
Q Consensus 116 ~~L~~EN~~L~~el~~L~~~~---~~l~~EN~~Lrae 149 (201)
..+..||..|++++..|+.+. ..+..||.+||+.
T Consensus 72 ~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~l 108 (276)
T PRK13922 72 FDLREENEELKKELLELESRLQELEQLEAENARLREL 108 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443322 3456666666653
No 71
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=88.55 E-value=9 Score=29.06 Aligned_cols=74 Identities=19% Similarity=0.180 Sum_probs=63.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 88 RRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 88 RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
-++...++.....=..|...+..|+.++..|..|-..-..+.-.+.+..+.+..||..|+..+..=+..+..|+
T Consensus 6 ~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~ 79 (96)
T PF08647_consen 6 VSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLK 79 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 35666777777888889999999999999999999999999999999999999999999999876665555554
No 72
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=88.54 E-value=9.8 Score=31.95 Aligned_cols=62 Identities=15% Similarity=0.176 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 100 SRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 100 SR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
-+...+..+..|+.++......++.|..++..|.-++..++.....|..+-.+|-.++....
T Consensus 124 ~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k 185 (194)
T PF08614_consen 124 ELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQRK 185 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444456666677777777777777777777777777777777777777777777765543
No 73
>PRK11637 AmiB activator; Provisional
Probab=88.14 E-value=12 Score=34.95 Aligned_cols=59 Identities=12% Similarity=0.170 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 103 RKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 103 RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
..+..+.+++.++..+..+...+..++..+..++..+..+=..|..++.+++..|....
T Consensus 65 ~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~ 123 (428)
T PRK11637 65 QQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQE 123 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555555555555555555555555555555555555555554444
No 74
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=88.01 E-value=11 Score=32.68 Aligned_cols=54 Identities=15% Similarity=0.240 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159 107 HLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 107 ~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l 160 (201)
.++++..+...|..+-..|..+++.+...+..+...-..++.++.+|.+++..+
T Consensus 43 ~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~ 96 (251)
T PF11932_consen 43 RIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQI 96 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444444443
No 75
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=87.83 E-value=18 Score=31.54 Aligned_cols=79 Identities=9% Similarity=0.172 Sum_probs=69.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 043159 85 RKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQLS 163 (201)
Q Consensus 85 RR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~~~ 163 (201)
=|+-++..-.+-+.|.-..-++++..|...+..-+.+-+....+-..++.+...|..|....+++|.+|++.|..|+..
T Consensus 105 irR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q 183 (192)
T PF11180_consen 105 IRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQ 183 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677778888888888899999999999999999888888888999999999999999999999999999999964
No 76
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=86.95 E-value=5.4 Score=30.47 Aligned_cols=42 Identities=33% Similarity=0.439 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Q 043159 116 VRLRTENHNLIDKLNHVSES------HDRVLQENARLREEASDLRQML 157 (201)
Q Consensus 116 ~~L~~EN~~L~~el~~L~~~------~~~l~~EN~~Lrael~~Lr~~L 157 (201)
..+..+|..|..++..|+.+ ......||.+|++++..|+...
T Consensus 20 ~~~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~ 67 (86)
T PF12711_consen 20 SYLEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFY 67 (86)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666677777666643 5668899999999998887665
No 77
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=86.90 E-value=1 Score=32.28 Aligned_cols=30 Identities=20% Similarity=0.357 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 120 TENHNLIDKLNHVSESHDRVLQENARLREE 149 (201)
Q Consensus 120 ~EN~~L~~el~~L~~~~~~l~~EN~~Lrae 149 (201)
.|-+.|+.+|..|..+...++.||..||+.
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345566667777777777778888888764
No 78
>PF15058 Speriolin_N: Speriolin N terminus
Probab=86.79 E-value=1.7 Score=37.92 Aligned_cols=38 Identities=24% Similarity=0.394 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 108 LDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDL 153 (201)
Q Consensus 108 l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~L 153 (201)
.+.|.+++++|-.||++|++.+. |..||.+||.-+.+-
T Consensus 7 yeGlrhqierLv~ENeeLKKlVr--------LirEN~eLksaL~ea 44 (200)
T PF15058_consen 7 YEGLRHQIERLVRENEELKKLVR--------LIRENHELKSALGEA 44 (200)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHH--------HHHHHHHHHHHHHHh
Confidence 36788889999999999988776 566888888775443
No 79
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=86.79 E-value=0.03 Score=52.27 Aligned_cols=55 Identities=22% Similarity=0.184 Sum_probs=47.6
Q ss_pred cchHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 043159 80 RIIDERKQRRMISNRESARR---SRMRKQRHLDELWSHVVRLR-TENHNLIDKLNHVSE 134 (201)
Q Consensus 80 ~~~deRR~RR~lsNRESARR---SR~RKq~~l~eLe~qV~~L~-~EN~~L~~el~~L~~ 134 (201)
...+.|+.+|+++|+.+|.+ +|.||+.....|..+|+.|+ .++..|..++..|..
T Consensus 149 ~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~Lqn 207 (395)
T KOG1414|consen 149 PEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPLQN 207 (395)
T ss_pred CcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCcccccccc
Confidence 35788999999999999999 99999999999999999999 888876666665443
No 80
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=86.71 E-value=4.7 Score=39.92 Aligned_cols=62 Identities=29% Similarity=0.451 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 96 SARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQML 157 (201)
Q Consensus 96 SARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L 157 (201)
.|.+.|..-...+.+....+..++.+...+++++..+..+...|..||.+|+.++..++..|
T Consensus 131 ~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~l 192 (546)
T KOG0977|consen 131 KAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQL 192 (546)
T ss_pred HHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 33334444445555666666777777777777777777777788888888888877777544
No 81
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=86.61 E-value=6.5 Score=29.61 Aligned_cols=58 Identities=26% Similarity=0.315 Sum_probs=42.1
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043159 105 QRHLDELWS-HVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQL 162 (201)
Q Consensus 105 q~~l~eLe~-qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~~ 162 (201)
...++.++. .-+.|..+-..|+..+..|..+.+.+..||..|+.+-.-|+.=|..|-.
T Consensus 7 ~~d~e~~~~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~ 65 (80)
T PF10224_consen 7 SEDIEKLEKEEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMS 65 (80)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444553 3567777777888888888888888888888888888888877777653
No 82
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=86.44 E-value=7.2 Score=38.98 Aligned_cols=72 Identities=22% Similarity=0.374 Sum_probs=45.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 90 MISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLID---KLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 90 ~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~---el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
...|.+.--+--..+..+|.+|+.++..+..+...... .+..=+....++++.|..||.++.+|...+..|.
T Consensus 106 qv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~lt 180 (617)
T PF15070_consen 106 QVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLT 180 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34455544444447788888888888777665433322 2222233466677778888888888877776665
No 83
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.41 E-value=6.4 Score=35.67 Aligned_cols=56 Identities=13% Similarity=0.250 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 043159 105 QRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQLS 163 (201)
Q Consensus 105 q~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~~~ 163 (201)
...++++..++..++.++.++..++..+..++..+ +..++++-.-|..+++.|+.+
T Consensus 58 ~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~---~~~I~~r~~~l~~raRAmq~n 113 (265)
T COG3883 58 DNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAEL---KENIVERQELLKKRARAMQVN 113 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHc
Confidence 33333333333444444444433333333332222 223333444444555555543
No 84
>PRK09039 hypothetical protein; Validated
Probab=86.24 E-value=5 Score=36.98 Aligned_cols=50 Identities=16% Similarity=0.153 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159 111 LWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 111 Le~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l 160 (201)
...+|..|+.+...|+.++..+...++.++.+....++++.+|.++|...
T Consensus 135 ~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 135 ALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456677777777777777777777777777777777777777766555
No 85
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=86.13 E-value=11 Score=27.51 Aligned_cols=58 Identities=14% Similarity=0.277 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 104 KQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 104 Kq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
|.+.+..|-.+-..|......+...+..|+.+...++.+...|+.++..+...+..+.
T Consensus 10 KDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~ 67 (74)
T PF12329_consen 10 KDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLE 67 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777777766666667777777776777777777776666666666554
No 86
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=86.06 E-value=5.3 Score=34.74 Aligned_cols=51 Identities=24% Similarity=0.356 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 108 LDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLT 158 (201)
Q Consensus 108 l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~ 158 (201)
+++|+..-..|..||..|++.+..+.+....|..|+..|+.++..+.+.|.
T Consensus 10 v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~ 60 (193)
T PF14662_consen 10 VEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQ 60 (193)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555555555555555554444443
No 87
>PRK02793 phi X174 lysis protein; Provisional
Probab=85.83 E-value=6.6 Score=28.61 Aligned_cols=44 Identities=18% Similarity=0.125 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159 110 ELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 110 eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l 160 (201)
+++.++..|+....-+..-++.|.+ .+.. ...++..|++.|..|
T Consensus 5 ~~e~Ri~~LE~~lafQe~tIe~Ln~---~v~~----Qq~~I~~L~~~l~~L 48 (72)
T PRK02793 5 SLEARLAELESRLAFQEITIEELNV---TVTA----HEMEMAKLRDHLRLL 48 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH---HHHH----HHHHHHHHHHHHHHH
Confidence 4677777777665555444443322 2222 233345555555555
No 88
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=85.68 E-value=6.8 Score=28.10 Aligned_cols=44 Identities=14% Similarity=0.161 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 111 LWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 111 Le~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
|+.++..|+....-+-..++.|.. .=.....++..|++.|..|.
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~-------~v~~Qq~~I~~L~~~l~~L~ 45 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELND-------VVTEQQRQIDRLQRQLRLLR 45 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 456666666555444444443322 22223335566666666665
No 89
>PRK09039 hypothetical protein; Validated
Probab=85.68 E-value=11 Score=34.75 Aligned_cols=21 Identities=24% Similarity=0.232 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 043159 110 ELWSHVVRLRTENHNLIDKLN 130 (201)
Q Consensus 110 eLe~qV~~L~~EN~~L~~el~ 130 (201)
-|..+++.|+.+...|...|.
T Consensus 141 ~L~~qI~aLr~Qla~le~~L~ 161 (343)
T PRK09039 141 LLNQQIAALRRQLAALEAALD 161 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 90
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=85.63 E-value=3.1 Score=32.26 Aligned_cols=30 Identities=10% Similarity=0.262 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 104 KQRHLDELWSHVVRLRTENHNLIDKLNHVS 133 (201)
Q Consensus 104 Kq~~l~eLe~qV~~L~~EN~~L~~el~~L~ 133 (201)
.++++++++.+++.|+.+|..|..++..|+
T Consensus 32 l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 32 VNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444455555555555555555555554443
No 91
>smart00338 BRLZ basic region leucin zipper.
Probab=85.61 E-value=4.4 Score=28.20 Aligned_cols=30 Identities=30% Similarity=0.489 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159 131 HVSESHDRVLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 131 ~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l 160 (201)
.|..++..+..+|..|+.++..|+..+..+
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~l~~e~~~l 59 (65)
T smart00338 30 ELERKVEQLEAENERLKKEIERLRRELEKL 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555555544443
No 92
>PRK00295 hypothetical protein; Provisional
Probab=85.55 E-value=9 Score=27.61 Aligned_cols=19 Identities=21% Similarity=0.171 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 043159 111 LWSHVVRLRTENHNLIDKL 129 (201)
Q Consensus 111 Le~qV~~L~~EN~~L~~el 129 (201)
++.++..|+....-+..-+
T Consensus 3 ~e~Ri~~LE~kla~qE~ti 21 (68)
T PRK00295 3 LEERVTELESRQAFQDDTI 21 (68)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555444443333
No 93
>PHA02562 46 endonuclease subunit; Provisional
Probab=85.52 E-value=15 Score=34.67 Aligned_cols=44 Identities=14% Similarity=0.290 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREE 149 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrae 149 (201)
.....|+.++..|+.++..+..++..+..++..+..+-..+..+
T Consensus 358 ~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke 401 (562)
T PHA02562 358 DKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKE 401 (562)
T ss_pred HHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555555555544444444
No 94
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=85.41 E-value=19 Score=29.52 Aligned_cols=73 Identities=22% Similarity=0.287 Sum_probs=49.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 89 RMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 89 R~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
.........+.-++.+++.++.++..+..+..+-..|..++.........+..+-..+.+....+.+++.+.+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 185 (191)
T PF04156_consen 113 KLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQ 185 (191)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555556677777777777777777777777766666666666666666666666666666666654
No 95
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=85.36 E-value=4.2 Score=36.16 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 105 QRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEA 150 (201)
Q Consensus 105 q~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael 150 (201)
+++..|||.++..+..+...|+.+++ .|.++|..|-+++
T Consensus 92 R~Rn~ELE~elr~~~~~~~~L~~Ev~-------~L~~DN~kLYEKi 130 (248)
T PF08172_consen 92 RQRNAELEEELRKQQQTISSLRREVE-------SLRADNVKLYEKI 130 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 34456677777666666655555544 4555666665554
No 96
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=85.29 E-value=6.2 Score=36.43 Aligned_cols=50 Identities=26% Similarity=0.323 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159 111 LWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 111 Le~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l 160 (201)
|+.++..+..||..|...+...+.....|.+|...|+.+.++....|.+.
T Consensus 246 lQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~Ea 295 (306)
T PF04849_consen 246 LQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEA 295 (306)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444444444444433
No 97
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=85.12 E-value=3.7 Score=36.19 Aligned_cols=16 Identities=38% Similarity=0.686 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 043159 133 SESHDRVLQENARLRE 148 (201)
Q Consensus 133 ~~~~~~l~~EN~~Lra 148 (201)
..++++|..||+.|+.
T Consensus 192 ~~EydrLlee~~~Lq~ 207 (216)
T KOG1962|consen 192 QDEYDRLLEEYSKLQE 207 (216)
T ss_pred ccHHHHHHHHHHHHHH
Confidence 3333333333333333
No 98
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=85.07 E-value=29 Score=31.97 Aligned_cols=55 Identities=22% Similarity=0.313 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 107 HLDELWSHVVRLRTENHNLIDKLNHVSES-----------HDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 107 ~l~eLe~qV~~L~~EN~~L~~el~~L~~~-----------~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
+|+.|+.+...|+.+|+.|.-++..++++ ...|+.+|..+++....|+..+..|.
T Consensus 53 qL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLE 118 (333)
T KOG1853|consen 53 QLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELE 118 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444555555544444332 34567778888888888887777765
No 99
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=85.06 E-value=27 Score=31.89 Aligned_cols=77 Identities=17% Similarity=0.238 Sum_probs=51.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 043159 90 MISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQLSSPY 166 (201)
Q Consensus 90 ~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~~~~~~ 166 (201)
.+..=+....-+..=.+.+.+|+.+...|..+-..+-.....+..+...+..|...|..++......|..+....+|
T Consensus 62 l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ktNv~ 138 (314)
T PF04111_consen 62 LLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKTNVY 138 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT--TT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 33333334444444455566666666667666666666777777777778888888888888888888888866655
No 100
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=84.81 E-value=2.7 Score=32.60 Aligned_cols=31 Identities=19% Similarity=0.347 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 124 NLIDKLNHVSESHDRVLQENARLREEASDLR 154 (201)
Q Consensus 124 ~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr 154 (201)
.+..++..+++++..+..+|..|+.++..|+
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444444444444555555555555554
No 101
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.55 E-value=11 Score=28.29 Aligned_cols=53 Identities=15% Similarity=0.167 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159 108 LDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 108 l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l 160 (201)
++.|+.+|.+.-....-|.-+++.|+++...+..|-..+.....+|++.-..+
T Consensus 6 ~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneql 58 (79)
T COG3074 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQL 58 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666555555666666666655555555555555555554443333
No 102
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=84.52 E-value=31 Score=31.40 Aligned_cols=60 Identities=13% Similarity=0.256 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 043159 105 QRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQLSS 164 (201)
Q Consensus 105 q~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~~~~ 164 (201)
+..++.+..++.+.+.+-..++.++...+.++..+..+-..|...+..+..++......+
T Consensus 206 ~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf~~~s 265 (269)
T PF05278_consen 206 KEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKFHGKS 265 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 567777777888888888888888888888888888888888888888888888776433
No 103
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=84.38 E-value=2 Score=40.57 Aligned_cols=32 Identities=38% Similarity=0.479 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 114 HVVRLRTENHNLIDKLNHVSESHDRVLQENARLR 147 (201)
Q Consensus 114 qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lr 147 (201)
+...|+.||+.|+++++.|+.+..+| ||..|+
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~eVerL--E~e~l~ 64 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKIEVERL--ENEMLR 64 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHH--HHHhhh
Confidence 55677788888888888888777777 555665
No 104
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=84.34 E-value=7.8 Score=34.62 Aligned_cols=32 Identities=22% Similarity=0.403 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 130 NHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 130 ~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
..+..+...|+.||..||.++..|++.|..+.
T Consensus 218 ~e~~~r~~~leken~~lr~~v~~l~~el~~~~ 249 (269)
T KOG3119|consen 218 DEMAHRVAELEKENEALRTQVEQLKKELATLR 249 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566666666666666666665554
No 105
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=84.18 E-value=35 Score=32.81 Aligned_cols=31 Identities=29% Similarity=0.339 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 043159 83 DERKQRRMISNRESARRSRMRKQRHLDELWS 113 (201)
Q Consensus 83 deRR~RR~lsNRESARRSR~RKq~~l~eLe~ 113 (201)
++|.+||+..--|-=||.|.+=...+.||-.
T Consensus 227 ~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~ 257 (411)
T KOG1318|consen 227 LERDRRKRDNHNEVERRRRENINDRIKELGQ 257 (411)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444443
No 106
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=84.05 E-value=10 Score=30.82 Aligned_cols=35 Identities=17% Similarity=0.299 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 107 HLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQ 141 (201)
Q Consensus 107 ~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~ 141 (201)
..++++.++..|..++..+-.+|..|..++..++.
T Consensus 15 r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~ 49 (143)
T PF12718_consen 15 RAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEE 49 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444433333333
No 107
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=84.04 E-value=23 Score=30.29 Aligned_cols=79 Identities=14% Similarity=0.178 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHH
Q 043159 83 DERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSES--------------HDRVLQENARLRE 148 (201)
Q Consensus 83 deRR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~--------------~~~l~~EN~~Lra 148 (201)
+-+-.+..+...-+-+-.+.+.+.+...|+.++..-..++..+..++..|..+ ......|..+|+.
T Consensus 87 nV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks 166 (190)
T PF05266_consen 87 NVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKS 166 (190)
T ss_pred ccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555666666666666666666666654433333333333333333 2333344555555
Q ss_pred HHHHHHHHHHHhh
Q 043159 149 EASDLRQMLTELQ 161 (201)
Q Consensus 149 el~~Lr~~L~~l~ 161 (201)
.+..+.+.+.++.
T Consensus 167 ~~~~l~~~~~~~e 179 (190)
T PF05266_consen 167 EAEALKEEIENAE 179 (190)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
No 108
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=83.92 E-value=13 Score=26.40 Aligned_cols=47 Identities=21% Similarity=0.294 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASD 152 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~ 152 (201)
+.+++|..+|..|.....+|...+..++........|=.+-..++..
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN 49 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDN 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677777777777777777777777766655555544444444433
No 109
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=83.88 E-value=9 Score=32.57 Aligned_cols=52 Identities=19% Similarity=0.275 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 107 HLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLT 158 (201)
Q Consensus 107 ~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~ 158 (201)
+|++=..+.+.|..-|.-|+.+++.....++.|..+...|..+...++..|.
T Consensus 68 rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~ 119 (182)
T PF15035_consen 68 RLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELE 119 (182)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455666666666667666666666666666666666666666555554
No 110
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=83.76 E-value=5.7 Score=36.79 Aligned_cols=47 Identities=23% Similarity=0.351 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 109 DELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQ 155 (201)
Q Consensus 109 ~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~ 155 (201)
+.|...+..|+.+|..|+.++...+..+..|..||..||+....+.+
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~ 69 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQA 69 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666666666666666666666666544443
No 111
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=83.67 E-value=17 Score=38.74 Aligned_cols=67 Identities=16% Similarity=0.279 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 95 ESARRSRMRKQRHLDELWSHV-VRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 95 ESARRSR~RKq~~l~eLe~qV-~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
...+.+..+..+.+.+++.+. ..+..+-.+...+++.|.++...++..+..|+++..++...+...+
T Consensus 368 ~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ 435 (1074)
T KOG0250|consen 368 RKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEE 435 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 334444444445555555555 4444445555555556666666666666666666555554444443
No 112
>PRK00736 hypothetical protein; Provisional
Probab=83.56 E-value=10 Score=27.31 Aligned_cols=50 Identities=20% Similarity=0.233 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043159 106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQL 162 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~~ 162 (201)
+++.+||.++..++.....|-..+..-.+.+ ..|..++..|..+|.++..
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i-------~~L~~ql~~L~~rl~~~~~ 54 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTV-------EQMRKKLDALTERFLSLEE 54 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhcc
Confidence 4588999999988887777766655544433 5666778888888888764
No 113
>PRK04325 hypothetical protein; Provisional
Probab=83.52 E-value=10 Score=27.73 Aligned_cols=47 Identities=15% Similarity=0.172 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159 107 HLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 107 ~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l 160 (201)
++..++.++..|+....-+..-++.|.. .+.... .++..|+++|..|
T Consensus 3 ~~~~~e~Ri~~LE~klAfQE~tIe~LN~---vv~~Qq----~~I~~L~~ql~~L 49 (74)
T PRK04325 3 AVQEMEDRITELEIQLAFQEDLIDGLNA---TVARQQ----QTLDLLQAQLRLL 49 (74)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH----HHHHHHHHHHHHH
Confidence 3556777777777666555544443322 222223 3345666666666
No 114
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=83.38 E-value=7.7 Score=26.91 Aligned_cols=30 Identities=23% Similarity=0.432 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159 131 HVSESHDRVLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 131 ~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l 160 (201)
.|...+..|..+|..|+.++..|...+..|
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 30 ELEEKVEELESENEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444433
No 115
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=83.36 E-value=24 Score=29.06 Aligned_cols=73 Identities=19% Similarity=0.195 Sum_probs=44.2
Q ss_pred chHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159 81 IIDERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 81 ~~deRR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l 160 (201)
..-+|-......|++.+-+=-.-+++.+..|+.++..+..+...|..++..++. |+..|-..+.+.+.++..|
T Consensus 27 ~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~s-------Ek~~L~k~lq~~q~kv~eL 99 (140)
T PF10473_consen 27 ESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRS-------EKENLDKELQKKQEKVSEL 99 (140)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 344556666777777777777777777777777777776666666666555443 4444444444444444444
No 116
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=83.31 E-value=9.7 Score=34.43 Aligned_cols=16 Identities=25% Similarity=0.522 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 043159 115 VVRLRTENHNLIDKLN 130 (201)
Q Consensus 115 V~~L~~EN~~L~~el~ 130 (201)
+..+..|+..|..++.
T Consensus 144 l~E~~~EkeeL~~ele 159 (290)
T COG4026 144 LEELQKEKEELLKELE 159 (290)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 117
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=83.12 E-value=16 Score=26.83 Aligned_cols=47 Identities=19% Similarity=0.269 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043159 116 VRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQL 162 (201)
Q Consensus 116 ~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~~ 162 (201)
......-+........+...+.....+|..|++++..|.+++..|..
T Consensus 17 ~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ 63 (70)
T PF04899_consen 17 QSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSE 63 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566777788888888889999999999999999988863
No 118
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=82.90 E-value=12 Score=28.94 Aligned_cols=12 Identities=25% Similarity=0.329 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 043159 107 HLDELWSHVVRL 118 (201)
Q Consensus 107 ~l~eLe~qV~~L 118 (201)
++..+|.+++.|
T Consensus 50 Rl~~lE~~l~~L 61 (106)
T PF10805_consen 50 RLQALETKLEHL 61 (106)
T ss_pred HHHHHHHHHHhC
Confidence 344444444444
No 119
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=82.87 E-value=18 Score=31.89 Aligned_cols=53 Identities=19% Similarity=0.288 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLT 158 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~ 158 (201)
+.++.|+.+++....+-..+..+...|+.+.+.+..|=.+|.++-..|+.++.
T Consensus 158 ~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 158 ADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444445555555555555555555555556655543
No 120
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=82.85 E-value=8 Score=27.02 Aligned_cols=29 Identities=21% Similarity=0.431 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 104 KQRHLDELWSHVVRLRTENHNLIDKLNHV 132 (201)
Q Consensus 104 Kq~~l~eLe~qV~~L~~EN~~L~~el~~L 132 (201)
.++.+.+|+.+++.++.+|..|..++..+
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445555555555555555555544443
No 121
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=82.82 E-value=35 Score=30.51 Aligned_cols=46 Identities=13% Similarity=0.270 Sum_probs=24.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 88 RRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVS 133 (201)
Q Consensus 88 RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~ 133 (201)
+++..-.+.+++.=.-++..+++|+.+|..++.+-+.+..++..+.
T Consensus 34 ~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e 79 (239)
T COG1579 34 KKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAE 79 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555566666666655555555555554443
No 122
>PRK04406 hypothetical protein; Provisional
Probab=82.54 E-value=11 Score=27.86 Aligned_cols=46 Identities=4% Similarity=0.106 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159 108 LDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 108 l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l 160 (201)
++.|+.++..|+... .....-++.|-..=.....++..|+++|..|
T Consensus 6 ~~~le~Ri~~LE~~l-------AfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L 51 (75)
T PRK04406 6 IEQLEERINDLECQL-------AFQEQTIEELNDALSQQQLLITKMQDQMKYV 51 (75)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335666666665433 3322222222222223333456666666666
No 123
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=82.53 E-value=6.6 Score=28.21 Aligned_cols=34 Identities=21% Similarity=0.323 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 121 ENHNLIDKLNHVSESHDRVLQENARLREEASDLR 154 (201)
Q Consensus 121 EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr 154 (201)
....+..++..+.++...+..||..|+.++..|.
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 25 QTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3344444555555555555556666665555543
No 124
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=82.41 E-value=23 Score=34.60 Aligned_cols=55 Identities=22% Similarity=0.225 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 107 HLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 107 ~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
..+.|+.++.+|..+|..|+..+..|+-.++.+..|-.++-.++..|+-+|.+.+
T Consensus 298 e~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq 352 (502)
T KOG0982|consen 298 EKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQ 352 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 3455667888999999999999999999999999998888888888888776655
No 125
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=82.41 E-value=22 Score=29.69 Aligned_cols=50 Identities=30% Similarity=0.392 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 109 DELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLT 158 (201)
Q Consensus 109 ~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~ 158 (201)
.+|..+|..|+.+|..|..++..+..+...+......|+.+...+..+-.
T Consensus 92 k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er~~ 141 (158)
T PF09744_consen 92 KDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHERER 141 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHH
Confidence 35666777777777777766666666666666666666666655554433
No 126
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=82.13 E-value=0.22 Score=46.52 Aligned_cols=45 Identities=33% Similarity=0.421 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 82 IDERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLI 126 (201)
Q Consensus 82 ~deRR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~ 126 (201)
.++|+.|=.++||.+|-++|.|||.....|+.+...+..+|..|.
T Consensus 282 p~~~~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~ 326 (395)
T KOG1414|consen 282 PDERRRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLL 326 (395)
T ss_pred chhhhhhhhhhhhhhhccccCCcccccccccccccchhhhhcccc
Confidence 466775559999999999999999999999999999999998876
No 127
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=82.05 E-value=12 Score=34.03 Aligned_cols=55 Identities=16% Similarity=0.254 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 107 HLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 107 ~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
.+..|..++..+..+...++.++..++.+...+..+-..+.++..++...|..+.
T Consensus 210 eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 210 ELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444444444444433
No 128
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=81.65 E-value=20 Score=34.51 Aligned_cols=65 Identities=14% Similarity=0.178 Sum_probs=31.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 85 RKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREE 149 (201)
Q Consensus 85 RR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrae 149 (201)
++.+-+.++=+.-.++....++....|+.++..++.+...+..++.........+......+...
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~ 102 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNAR 102 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHH
Confidence 33333444444444444455555556666666666665555555554444444444443333333
No 129
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=81.54 E-value=7.6 Score=34.39 Aligned_cols=52 Identities=10% Similarity=0.126 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQML 157 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L 157 (201)
+-+.+|..+++.|+.|...|+.+++.+..+++.+....+.|-.++..+..++
T Consensus 54 ~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~~~ 105 (263)
T PRK10803 54 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSSGG 105 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3457888999999999999999999999888889888888888888765433
No 130
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=81.12 E-value=28 Score=33.53 Aligned_cols=56 Identities=7% Similarity=0.128 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
..+..++.++.....++..+...|..+...+..+..+-.+=+..++++-+.+..++
T Consensus 73 ~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L~A~~r~g 128 (420)
T COG4942 73 TEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQLAALQRSG 128 (420)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44444555555555555566666666665555555544333333333333333333
No 131
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=81.11 E-value=6.1 Score=39.42 Aligned_cols=30 Identities=27% Similarity=0.368 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 106 RHLDELWSHVVRLRTENHNLIDKLNHVSES 135 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~ 135 (201)
++|.+|..+.+.|+.||..|++++..+..+
T Consensus 309 ~rLq~ll~Ene~Lk~ENatLk~qL~~l~~E 338 (655)
T KOG4343|consen 309 ARLQALLSENEQLKKENATLKRQLDELVSE 338 (655)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 344455555555555555555555554433
No 132
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=81.11 E-value=12 Score=31.02 Aligned_cols=16 Identities=38% Similarity=0.563 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHh
Q 043159 145 RLREEASDLRQMLTEL 160 (201)
Q Consensus 145 ~Lrael~~Lr~~L~~l 160 (201)
+.+++...+..++.++
T Consensus 117 ~~r~e~~~~~~ki~e~ 132 (177)
T PF07798_consen 117 RIREEQAKQELKIQEL 132 (177)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444444
No 133
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=80.97 E-value=6 Score=39.97 Aligned_cols=52 Identities=19% Similarity=0.243 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159 109 DELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 109 ~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l 160 (201)
.+|-.+|.+|..|+.-|+.++..+++.-..++..+.+|.+++..+++.+.+.
T Consensus 325 NDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~a 376 (832)
T KOG2077|consen 325 NDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDA 376 (832)
T ss_pred HHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788899999999999999999998888888888999999988888877665
No 134
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=80.72 E-value=25 Score=33.44 Aligned_cols=74 Identities=24% Similarity=0.310 Sum_probs=51.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH
Q 043159 84 ERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHV--------------SESHDRVLQENARLREE 149 (201)
Q Consensus 84 eRR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L--------------~~~~~~l~~EN~~Lrae 149 (201)
+-|.|.+.-|-|.-|..|.- +++-..+.++|+..|++|+.++..+ ......+..||..|..+
T Consensus 74 q~kirk~~e~~eglr~i~es----~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlq 149 (401)
T PF06785_consen 74 QTKIRKITEKDEGLRKIRES----VEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQ 149 (401)
T ss_pred HHHHHHHHhccHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777777877766643 3444455667777777777776544 34466778899999999
Q ss_pred HHHHHHHHHHhh
Q 043159 150 ASDLRQMLTELQ 161 (201)
Q Consensus 150 l~~Lr~~L~~l~ 161 (201)
+.++.+...++.
T Consensus 150 L~~l~~e~~Eke 161 (401)
T PF06785_consen 150 LDALQQECGEKE 161 (401)
T ss_pred HHHHHHHHhHhH
Confidence 998888876654
No 135
>PRK00736 hypothetical protein; Provisional
Probab=80.51 E-value=19 Score=25.96 Aligned_cols=19 Identities=5% Similarity=-0.020 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 043159 111 LWSHVVRLRTENHNLIDKL 129 (201)
Q Consensus 111 Le~qV~~L~~EN~~L~~el 129 (201)
++.++..|+....-+-.-+
T Consensus 3 ~e~Ri~~LE~klafqe~ti 21 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTI 21 (68)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555444443333
No 136
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=80.17 E-value=9.4 Score=30.44 Aligned_cols=42 Identities=21% Similarity=0.330 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 112 WSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDL 153 (201)
Q Consensus 112 e~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~L 153 (201)
-.||-+|+..-..|..++..++++.-.|..||..|-+-+..|
T Consensus 62 ItQVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNL 103 (120)
T KOG3650|consen 62 ITQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENL 103 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence 345665555555555555555555555555555554444433
No 137
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=79.93 E-value=2.2 Score=28.67 Aligned_cols=36 Identities=28% Similarity=0.346 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 116 VRLRTENHNLIDKLNHVSESHDRVLQENARLREEAS 151 (201)
Q Consensus 116 ~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~ 151 (201)
.+|-..|..|..++..+...+..|..||..||+++.
T Consensus 10 ~~laK~Ns~l~~ki~~le~~~s~L~~en~~lR~~~~ 45 (46)
T PF07558_consen 10 RELAKRNSALSIKIQELENEVSKLLNENVNLRELVL 45 (46)
T ss_dssp --------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHhHhHHHHhHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 344455666666666666666667777777766653
No 138
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=79.74 E-value=38 Score=28.97 Aligned_cols=30 Identities=20% Similarity=0.363 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 103 RKQRHLDELWSHVVRLRTENHNLIDKLNHV 132 (201)
Q Consensus 103 RKq~~l~eLe~qV~~L~~EN~~L~~el~~L 132 (201)
+++..+..|..++..++.+...++.++..+
T Consensus 67 ~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~ 96 (302)
T PF10186_consen 67 ELRERLERLRERIERLRKRIEQKRERLEEL 96 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444333
No 139
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=79.70 E-value=6.4 Score=38.34 Aligned_cols=38 Identities=11% Similarity=0.210 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043159 125 LIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQL 162 (201)
Q Consensus 125 L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~~ 162 (201)
|..+-..+.++..+|..|=..|...+..|.++|..+..
T Consensus 107 v~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~~~~ 144 (472)
T TIGR03752 107 VQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAGVLT 144 (472)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 44444456667778888888888888888888876653
No 140
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=79.65 E-value=28 Score=29.56 Aligned_cols=41 Identities=17% Similarity=0.318 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 108 LDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLRE 148 (201)
Q Consensus 108 l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lra 148 (201)
..+|+.++..|+.++..|..++..+..+++.+...+..+++
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~ 162 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQ 162 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888888888888888777777666655433
No 141
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=79.63 E-value=4.8 Score=32.44 Aligned_cols=32 Identities=25% Similarity=0.348 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 119 RTENHNLIDKLNHVSESHDRVLQENARLREEA 150 (201)
Q Consensus 119 ~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael 150 (201)
+.|.+.|+.++..|.++...|+.||..||.-+
T Consensus 66 REEVe~Lk~qI~eL~er~~~Le~EN~lLk~~~ 97 (123)
T KOG4797|consen 66 REEVEVLKEQIRELEERNSALERENSLLKTLA 97 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 33444555666666666777788888888654
No 142
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=79.39 E-value=1.1 Score=34.51 Aligned_cols=53 Identities=21% Similarity=0.336 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLT 158 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~ 158 (201)
.+|+.|...+..|..+|..|..++..|..++..+...+..|+..+...+....
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~aq~~a~ 77 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQAQETAD 77 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCT-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhhhhhHH
Confidence 57888888888888888888888888777777766666666665544444333
No 143
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=79.27 E-value=7.4 Score=30.32 Aligned_cols=45 Identities=18% Similarity=0.262 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 117 RLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 117 ~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
.|+.+-+-...+...+++++..++.+|..|..++.+++-....+.
T Consensus 5 eLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~d 49 (96)
T PF11365_consen 5 ELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYGDLD 49 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 444444444555556666777889999999999999888665443
No 144
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=79.24 E-value=9.1 Score=28.40 Aligned_cols=47 Identities=28% Similarity=0.425 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhh
Q 043159 115 VVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLR--QMLTELQ 161 (201)
Q Consensus 115 V~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr--~~L~~l~ 161 (201)
+.....+...+..++..+..+...+..||..|+.|...|. .++....
T Consensus 30 ~v~~~~~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~~~rIe~iA 78 (97)
T PF04999_consen 30 VVYSRHQSRQLFYELQQLEKEIDQLQEENERLRLEIATLSSPSRIERIA 78 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 3455666777888888888888899999999999888776 3444443
No 145
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=79.08 E-value=9.8 Score=32.42 Aligned_cols=44 Identities=25% Similarity=0.285 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 110 ELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQML 157 (201)
Q Consensus 110 eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L 157 (201)
=.|.|+..|+.+|+.|+.+++.|.. ...+|..+-.++..+.-.|
T Consensus 44 L~erQ~~~LR~~~~~L~~~l~~Li~----~Ar~Ne~~~~~~~~l~l~L 87 (225)
T PF04340_consen 44 LVERQLERLRERNRQLEEQLEELIE----NARENEAIFQRLHRLVLAL 87 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 3456666677777766666665543 4455655555555444433
No 146
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=78.78 E-value=7.4 Score=27.19 Aligned_cols=30 Identities=23% Similarity=0.415 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 124 NLIDKLNHVSESHDRVLQENARLREEASDL 153 (201)
Q Consensus 124 ~L~~el~~L~~~~~~l~~EN~~Lrael~~L 153 (201)
.+..++..+..++..+..||..|+.++..|
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555556666666666666666
No 147
>PRK00846 hypothetical protein; Provisional
Probab=78.58 E-value=19 Score=26.99 Aligned_cols=16 Identities=13% Similarity=0.173 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHhh
Q 043159 146 LREEASDLRQMLTELQ 161 (201)
Q Consensus 146 Lrael~~Lr~~L~~l~ 161 (201)
....+..|+++|..|.
T Consensus 39 qq~~I~~L~~ql~~L~ 54 (77)
T PRK00846 39 ARLTGARNAELIRHLL 54 (77)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334455555555443
No 148
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=78.55 E-value=13 Score=33.12 Aligned_cols=54 Identities=22% Similarity=0.258 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 043159 111 LWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQLSS 164 (201)
Q Consensus 111 Le~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~~~~ 164 (201)
+..|-+..+..|.+|..++..+.+.+..+..|-..|++.-.+|-.++..++...
T Consensus 84 VtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY~ 137 (248)
T PF08172_consen 84 VTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQSYN 137 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 445667888888888888888888888889999999999999999999988543
No 149
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=78.01 E-value=23 Score=32.88 Aligned_cols=44 Identities=16% Similarity=0.225 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 110 ELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDL 153 (201)
Q Consensus 110 eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~L 153 (201)
.|..-+...+.+|..|..++..|++++..+..++..||+.+...
T Consensus 69 ~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~ 112 (319)
T PF09789_consen 69 NLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQ 112 (319)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhh
Confidence 34444555555555555555555555555555555555555544
No 150
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.81 E-value=23 Score=33.57 Aligned_cols=58 Identities=14% Similarity=0.198 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 102 MRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTE 159 (201)
Q Consensus 102 ~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~ 159 (201)
+|.++.++.++.+.+.|+..-+.|+.-.+.|......|+++=..|.+.+.=|..+..+
T Consensus 221 ~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 221 RRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3445666666666666666666666666666666666666666666666666665555
No 151
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=77.47 E-value=27 Score=28.08 Aligned_cols=57 Identities=16% Similarity=0.204 Sum_probs=27.5
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Q 043159 104 KQRHLDELWSH--VVRLRTENHNLIDKLNHVSESH-DRVLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 104 Kq~~l~eLe~q--V~~L~~EN~~L~~el~~L~~~~-~~l~~EN~~Lrael~~Lr~~L~~l 160 (201)
+++++.+++.. +..+.....+|..+|+...... .....++......+.+++++|..|
T Consensus 79 ~~~~i~~~~~~~e~~~~a~~~~~l~~~Le~ae~~~~~~~~~~~~~~e~~~~~~~~riaEl 138 (139)
T PF13935_consen 79 AQQRIAELEQECENEDIALDVQKLRVELEAAEKRIAAELAEQAEAYEGEIADYAKRIAEL 138 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc
Confidence 34444444433 4444444444444444444433 333444455555566666666554
No 152
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=77.47 E-value=13 Score=29.65 Aligned_cols=49 Identities=33% Similarity=0.386 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043159 114 HVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQL 162 (201)
Q Consensus 114 qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~~ 162 (201)
+...|-.+.-+|...+..|.++.+.+..||-.||.+-.-|.+-+..+-.
T Consensus 57 EKaRlItQVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLMS 105 (120)
T KOG3650|consen 57 EKARLITQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMS 105 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHh
Confidence 4456666667777777777777777777777777777777777766653
No 153
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.22 E-value=30 Score=36.36 Aligned_cols=19 Identities=26% Similarity=0.403 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 043159 142 ENARLREEASDLRQMLTEL 160 (201)
Q Consensus 142 EN~~Lrael~~Lr~~L~~l 160 (201)
.+..|..++..|..+++.+
T Consensus 438 k~~ql~~eletLn~k~qql 456 (1118)
T KOG1029|consen 438 KKKQLQQELETLNFKLQQL 456 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444
No 154
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=77.16 E-value=16 Score=35.21 Aligned_cols=68 Identities=19% Similarity=0.185 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 94 RESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 94 RESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
-++|..-|.|..+--...|.+++++..|...|+.+++.......-|..||..||.-+..|.+-++-+-
T Consensus 226 eee~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~~ 293 (561)
T KOG1103|consen 226 EEEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHLR 293 (561)
T ss_pred hHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcC
Confidence 35666777777777777778888888999999999999888888899999999999998888777654
No 155
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=77.09 E-value=16 Score=30.13 Aligned_cols=55 Identities=15% Similarity=0.222 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
+.+-.|..+-..|+..-=...+++..+.++ +.|+.+|..|..++..|++.+..|.
T Consensus 47 eEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk-~eLE~~k~~L~qqv~~L~~e~s~~~ 101 (135)
T KOG4196|consen 47 EEVVRLKQRRRTLKNRGYAQSCRVKRVQQK-HELEKEKAELQQQVEKLKEENSRLR 101 (135)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555666665543 4678888888888888887777776
No 156
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=77.03 E-value=29 Score=26.09 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 043159 138 RVLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 138 ~l~~EN~~Lrael~~Lr~~L~~l 160 (201)
.+..|=..|+.++.++...+..+
T Consensus 71 ~l~~e~~~lk~~i~~le~~~~~~ 93 (108)
T PF02403_consen 71 ELKAEVKELKEEIKELEEQLKEL 93 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555544444443
No 157
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=76.97 E-value=16 Score=33.64 Aligned_cols=35 Identities=17% Similarity=0.293 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 127 DKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 127 ~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
.+-+.|.-++..|+.+|.+||.++..|.+.|..|.
T Consensus 248 ae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylK 282 (294)
T KOG4571|consen 248 AEKEALLGELEGLEKRNEELKDQASELEREIRYLK 282 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566677778888888888888877777665
No 158
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=76.95 E-value=22 Score=30.18 Aligned_cols=44 Identities=18% Similarity=0.279 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 111 LWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLR 154 (201)
Q Consensus 111 Le~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr 154 (201)
+..+...|+.++..|..++..|..++..|..+...+.+....|-
T Consensus 102 ~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~ 145 (161)
T TIGR02894 102 LQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLI 145 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444433
No 159
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=76.94 E-value=26 Score=28.48 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 106 RHLDELWSHVVRLRTENHNLIDKLNH 131 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~el~~ 131 (201)
..+..|..++..|+.+...+..++..
T Consensus 35 ~EI~sL~~K~~~lE~eld~~~~~l~~ 60 (143)
T PF12718_consen 35 QEITSLQKKNQQLEEELDKLEEQLKE 60 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444443333333
No 160
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=76.58 E-value=53 Score=32.75 Aligned_cols=9 Identities=0% Similarity=0.050 Sum_probs=4.3
Q ss_pred hhhhhhhhc
Q 043159 36 FHLNRLLAN 44 (201)
Q Consensus 36 ~~~~~~~~~ 44 (201)
.+|+.++.|
T Consensus 75 V~F~ayyLP 83 (546)
T PF07888_consen 75 VQFQAYYLP 83 (546)
T ss_pred EEECcccCC
Confidence 445544444
No 161
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=76.49 E-value=4.8 Score=32.47 Aligned_cols=30 Identities=30% Similarity=0.421 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 104 KQRHLDELWSHVVRLRTENHNLIDKLNHVS 133 (201)
Q Consensus 104 Kq~~l~eLe~qV~~L~~EN~~L~~el~~L~ 133 (201)
|..-+++|..++..|+-||..|+.++..-.
T Consensus 1 k~~t~EeLaaeL~kLqmENk~LKkkl~~~~ 30 (118)
T PF05812_consen 1 KDMTMEELAAELQKLQMENKALKKKLRQSV 30 (118)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 445689999999999999999999987543
No 162
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=76.37 E-value=53 Score=28.83 Aligned_cols=36 Identities=17% Similarity=0.287 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 118 LRTENHNLIDKLNHVSESHDRVLQENARLREEASDL 153 (201)
Q Consensus 118 L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~L 153 (201)
++.|+..++..+..|..++..+...|..|...+.++
T Consensus 214 ~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~l 249 (312)
T PF00038_consen 214 AKEELKELRRQIQSLQAELESLRAKNASLERQLREL 249 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHH
Confidence 333333333333333333444444444444443333
No 163
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=76.02 E-value=26 Score=33.26 Aligned_cols=79 Identities=15% Similarity=0.202 Sum_probs=62.6
Q ss_pred cchHHHHHHHHHHhHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 80 RIIDERKQRRMISNRESARRSRMR---------KQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEA 150 (201)
Q Consensus 80 ~~~deRR~RR~lsNRESARRSR~R---------Kq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael 150 (201)
...++|-++-|.+|= +.--.| =|..|+|++.+++.-..|+..+-.++..++..|..|...-.+||+.+
T Consensus 122 ~EveekykkaMvsna---QLDNEKsnl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l 198 (405)
T KOG2010|consen 122 SEVEEKYKKAMVSNA---QLDNEKNNLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGL 198 (405)
T ss_pred HHHHHHHHHHHHHHH---hhcccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777788872 222222 24678899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 043159 151 SDLRQMLTELQ 161 (201)
Q Consensus 151 ~~Lr~~L~~l~ 161 (201)
..--+.|..-+
T Consensus 199 ~QRdeliee~G 209 (405)
T KOG2010|consen 199 RQRDELIEEHG 209 (405)
T ss_pred HHHHHHHHHcC
Confidence 88888887765
No 164
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=75.75 E-value=7.5 Score=35.01 Aligned_cols=35 Identities=31% Similarity=0.396 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 043159 116 VRLRTENHNLIDKLNHVS---ESHDRVLQENARLREEA 150 (201)
Q Consensus 116 ~~L~~EN~~L~~el~~L~---~~~~~l~~EN~~Lrael 150 (201)
..+..||+.|+.++..+. .+...++.||.+||..+
T Consensus 69 ~~~~~en~~Lk~~l~~~~~~~~~~~~l~~EN~~Lr~lL 106 (284)
T COG1792 69 KDLALENEELKKELAELEQLLEEVESLEEENKRLKELL 106 (284)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555554333 34556677777776654
No 165
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=75.64 E-value=17 Score=27.96 Aligned_cols=32 Identities=22% Similarity=0.191 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 111 LWSHVVRLRTENHNLIDKLNHVSESHDRVLQE 142 (201)
Q Consensus 111 Le~qV~~L~~EN~~L~~el~~L~~~~~~l~~E 142 (201)
-+.+|..|+.++..|..++..|+.+++....|
T Consensus 47 wek~v~~L~~e~~~l~~E~e~L~~~l~~e~~E 78 (87)
T PF12709_consen 47 WEKKVDELENENKALKRENEQLKKKLDTEREE 78 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433333333
No 166
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=75.39 E-value=15 Score=26.05 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 043159 138 RVLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 138 ~l~~EN~~Lrael~~Lr~~L~~l 160 (201)
.+..||..|+..+.++.+-++++
T Consensus 18 tvk~en~~i~~~ve~i~envk~l 40 (55)
T PF05377_consen 18 TVKKENEEISESVEKIEENVKDL 40 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555554443
No 167
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=75.28 E-value=23 Score=32.26 Aligned_cols=56 Identities=16% Similarity=0.358 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
..++.+...+..|+.||..++.+.+.....+..+..|+..+..++..+..++..|.
T Consensus 244 ~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe 299 (309)
T PF09728_consen 244 KEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLE 299 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777777888888888888887777777888888887777777777666654
No 168
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=74.91 E-value=10 Score=25.59 Aligned_cols=28 Identities=21% Similarity=0.419 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 128 KLNHVSESHDRVLQENARLREEASDLRQ 155 (201)
Q Consensus 128 el~~L~~~~~~l~~EN~~Lrael~~Lr~ 155 (201)
....+...+..|..+|..|+.++..|..
T Consensus 26 ~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 26 REEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555566666777777777766653
No 169
>PRK14127 cell division protein GpsB; Provisional
Probab=74.86 E-value=8.3 Score=30.55 Aligned_cols=27 Identities=22% Similarity=0.345 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 135 SHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 135 ~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
.+..+..||..|++++..|..+|..++
T Consensus 38 dye~l~~e~~~Lk~e~~~l~~~l~e~~ 64 (109)
T PRK14127 38 DYEAFQKEIEELQQENARLKAQVDELT 64 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555554444444
No 170
>PRK10963 hypothetical protein; Provisional
Probab=74.72 E-value=14 Score=31.85 Aligned_cols=17 Identities=24% Similarity=0.415 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 043159 114 HVVRLRTENHNLIDKLN 130 (201)
Q Consensus 114 qV~~L~~EN~~L~~el~ 130 (201)
|+..|+.+|..|..++.
T Consensus 45 Q~~~LR~r~~~Le~~l~ 61 (223)
T PRK10963 45 QMARQRNHIHVLEEEMT 61 (223)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444444
No 171
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=74.48 E-value=54 Score=28.03 Aligned_cols=58 Identities=19% Similarity=0.288 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 82 IDERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRV 139 (201)
Q Consensus 82 ~deRR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l 139 (201)
.+-...++.+.+-++-+.+=..-+.++..++.++..|+.+++.|..++..+.+..+.|
T Consensus 69 ~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL 126 (201)
T PF13851_consen 69 EEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDEL 126 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677888888888888888888888888888888888888888888776654444
No 172
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=74.35 E-value=41 Score=26.59 Aligned_cols=18 Identities=33% Similarity=0.554 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 043159 144 ARLREEASDLRQMLTELQ 161 (201)
Q Consensus 144 ~~Lrael~~Lr~~L~~l~ 161 (201)
..|..++..+..++.+|+
T Consensus 101 ~~le~e~~~~~~r~~dL~ 118 (132)
T PF07926_consen 101 EQLEKELSELEQRIEDLN 118 (132)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555555544
No 173
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=74.17 E-value=16 Score=32.33 Aligned_cols=40 Identities=23% Similarity=0.272 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 103 RKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQE 142 (201)
Q Consensus 103 RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~E 142 (201)
-=+.+|+.|..+|..|+.+++++..+++.+.++...+-.+
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~d 97 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQ 97 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467778888888888888888888887777765555444
No 174
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.91 E-value=22 Score=31.98 Aligned_cols=55 Identities=16% Similarity=0.297 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhcCCCC
Q 043159 112 WSHVVRLRTENHNLIDKLNHVSESHDRVL----QENARLREEASDLRQMLTELQLSSPY 166 (201)
Q Consensus 112 e~qV~~L~~EN~~L~~el~~L~~~~~~l~----~EN~~Lrael~~Lr~~L~~l~~~~~~ 166 (201)
..++..++.+-.+|..++..+....+++. .-++.|..++..|+-.+......+++
T Consensus 56 ~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~~l~~l~~~aG~v~V~G~G 114 (247)
T COG3879 56 VKELRSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALEDRLEKLRMLAGSVPVTGPG 114 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHhccCCCcCCc
Confidence 33333344444444444444444433333 55667777788887776666655543
No 175
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=73.74 E-value=18 Score=38.59 Aligned_cols=55 Identities=20% Similarity=0.276 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 043159 103 RKQRHLDELWSHVVRLRTENHNLIDKLNHVSE---SHDRVLQENARLREEASDLRQML 157 (201)
Q Consensus 103 RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~---~~~~l~~EN~~Lrael~~Lr~~L 157 (201)
.+..++++|+..+..|+.||+-|..+|..|.. ....|+..|..|...-.+++..+
T Consensus 527 ~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn~~~LEq~~n~lE~~~~elkk~i 584 (1195)
T KOG4643|consen 527 LLSNKLEELEELLGNLEEENAHLLKQIQSLKTTSQNGALLEQNNNDLELIHNELKKYI 584 (1195)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34578999999999999999999999998876 23344555554444433333333
No 176
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=73.69 E-value=57 Score=27.91 Aligned_cols=62 Identities=16% Similarity=0.223 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 100 SRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 100 SR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
...++...+.+|+.++..|+.+.+.+..+.+.....+.++..+-..|.+++...+.+.+...
T Consensus 125 ~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~~~ 186 (190)
T PF05266_consen 125 ELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQSVA 186 (190)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45567788899999999999999999988888889999999999999999999988877654
No 177
>PHA03162 hypothetical protein; Provisional
Probab=73.58 E-value=2.7 Score=34.65 Aligned_cols=28 Identities=25% Similarity=0.488 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 103 RKQRHLDELWSHVVRLRTENHNLIDKLN 130 (201)
Q Consensus 103 RKq~~l~eLe~qV~~L~~EN~~L~~el~ 130 (201)
+|+.-+++|..++..|+-||..|+.++.
T Consensus 10 k~~~tmEeLaaeL~kLqmENK~LKkkl~ 37 (135)
T PHA03162 10 KAQPTMEDLAAEIAKLQLENKALKKKIK 37 (135)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667799999999999999999999984
No 178
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=73.50 E-value=31 Score=27.95 Aligned_cols=57 Identities=14% Similarity=0.246 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 101 RMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQML 157 (201)
Q Consensus 101 R~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L 157 (201)
+.=-...+.+|+.+|..|..|--.=..+++.+-.+.+.+..++..|.+.+..|..+|
T Consensus 9 kE~He~ev~glq~K~~~L~~erc~Daqrleel~~knqqLreQqk~L~e~i~~LE~RL 65 (120)
T PF10482_consen 9 KEIHEKEVQGLQNKLLELKKERCLDAQRLEELFSKNQQLREQQKTLHENIKVLENRL 65 (120)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHH
Confidence 333344555666666666555443334444444444455555555555554444443
No 179
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=73.27 E-value=31 Score=24.69 Aligned_cols=40 Identities=23% Similarity=0.407 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159 114 HVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 114 qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l 160 (201)
++...+..|..+..++.. .+..|..|.+++..|+..+..+
T Consensus 19 EL~kvk~~n~~~e~kLqe-------aE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 19 ELTKVKSANLAFESKLQE-------AEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHh
Confidence 334455555555555554 4555555555555555555444
No 180
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=73.19 E-value=67 Score=34.50 Aligned_cols=58 Identities=21% Similarity=0.378 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 104 KQRHLDELWSHVVRLRTEN-HNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 104 Kq~~l~eLe~qV~~L~~EN-~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
++..++.|+.+|..++.+- ..+..++.....++..|..|+..|...+..|+..+.++.
T Consensus 370 ~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~ 428 (1074)
T KOG0250|consen 370 LKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVK 428 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555544 455555555555555555555555555555555555554
No 181
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=72.88 E-value=40 Score=25.77 Aligned_cols=43 Identities=21% Similarity=0.351 Sum_probs=20.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 89 RMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNH 131 (201)
Q Consensus 89 R~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~ 131 (201)
|-++.-+.+.+.+..|.+.+..|..++..|+.+...+...+..
T Consensus 64 rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~ 106 (126)
T PF13863_consen 64 RAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEE 106 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444455555555555555555555554444443
No 182
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=72.85 E-value=29 Score=29.47 Aligned_cols=23 Identities=17% Similarity=0.384 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043159 113 SHVVRLRTENHNLIDKLNHVSES 135 (201)
Q Consensus 113 ~qV~~L~~EN~~L~~el~~L~~~ 135 (201)
.++++....|..|...+..+...
T Consensus 88 eQLEq~~~~N~~L~~dl~klt~~ 110 (182)
T PF15035_consen 88 EQLEQARKANEALQEDLQKLTQD 110 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 183
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=72.75 E-value=64 Score=29.46 Aligned_cols=47 Identities=23% Similarity=0.273 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 105 QRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEAS 151 (201)
Q Consensus 105 q~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~ 151 (201)
.+.+.+|+.+...|..|-..|..+...+.+.-...-.+...+.-++.
T Consensus 63 ~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~ 109 (314)
T PF04111_consen 63 LQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELI 109 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444333333333333333333
No 184
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=72.27 E-value=16 Score=27.41 Aligned_cols=31 Identities=16% Similarity=0.436 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 121 ENHNLIDKLNHVSESHDRVLQENARLREEAS 151 (201)
Q Consensus 121 EN~~L~~el~~L~~~~~~l~~EN~~Lrael~ 151 (201)
..+.|..++..+..+-..+..||..|+.++.
T Consensus 69 K~~~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 69 KDQLLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444666677777777777777777777654
No 185
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=72.11 E-value=29 Score=34.65 Aligned_cols=55 Identities=18% Similarity=0.287 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 103 RKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQML 157 (201)
Q Consensus 103 RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L 157 (201)
+.++.+++|..+|..|..+-..+..++..+...+..+..|..+.+.+..+|.+.+
T Consensus 325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~ 379 (594)
T PF05667_consen 325 EQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEEL 379 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666555555555555555555555555444444444444433
No 186
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=71.97 E-value=45 Score=33.93 Aligned_cols=15 Identities=33% Similarity=0.361 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 043159 109 DELWSHVVRLRTENH 123 (201)
Q Consensus 109 ~eLe~qV~~L~~EN~ 123 (201)
.+||.++..|+.|-.
T Consensus 548 ~~lE~E~~~lr~elk 562 (697)
T PF09726_consen 548 RQLESELKKLRRELK 562 (697)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444333
No 187
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=71.90 E-value=5 Score=36.66 Aligned_cols=57 Identities=18% Similarity=0.210 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043159 106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQL 162 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~~ 162 (201)
.++.++|.+|..|+.-|..|.++++.-...+..+..--.++|++|..+..+|..|..
T Consensus 217 dRmk~aEaqvneLEvsN~DLsaKLe~gknaY~~~ieke~q~raeL~acEEkl~kmeE 273 (311)
T PF04642_consen 217 DRMKEAEAQVNELEVSNIDLSAKLEPGKNAYLAAIEKENQARAELNACEEKLKKMEE 273 (311)
T ss_pred HHHHHHHhhhhheecccHHHHHhhcCCcchHHHHHhhHHHHHHHHHHHHHHHhcccH
Confidence 356789999999999999999999877666666655566788999888888888864
No 188
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=71.86 E-value=7.1 Score=29.74 Aligned_cols=28 Identities=21% Similarity=0.425 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 104 KQRHLDELWSHVVRLRTENHNLIDKLNH 131 (201)
Q Consensus 104 Kq~~l~eLe~qV~~L~~EN~~L~~el~~ 131 (201)
|+++++.|...+..++.+|..|..++..
T Consensus 78 ~~~~~~~L~~~l~~l~~eN~~L~~~i~~ 105 (109)
T PF03980_consen 78 KKKEREQLNARLQELEEENEALAEEIQE 105 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555443
No 189
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=71.82 E-value=36 Score=24.81 Aligned_cols=53 Identities=21% Similarity=0.289 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159 108 LDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 108 l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l 160 (201)
|.+=..+++.|..|-+.|....-.+...+..|.+.+..+...+..|..++...
T Consensus 7 l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~ 59 (74)
T PF12329_consen 7 LAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEEL 59 (74)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666666666666666666666666666666666665544
No 190
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=71.61 E-value=25 Score=36.31 Aligned_cols=60 Identities=23% Similarity=0.309 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 102 MRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 102 ~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
.||+..+..|..++..+..+...++..+..++..+.....++..|.+++..||.+|..-.
T Consensus 297 ~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~ 356 (775)
T PF10174_consen 297 SRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKN 356 (775)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 466777888888888888888888888888888888888888888888887777776554
No 191
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=71.56 E-value=7.5 Score=27.95 Aligned_cols=27 Identities=19% Similarity=0.308 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 108 LDELWSHVVRLRTENHNLIDKLNHVSE 134 (201)
Q Consensus 108 l~eLe~qV~~L~~EN~~L~~el~~L~~ 134 (201)
++.|..++..|...|.+|..++..|+.
T Consensus 16 VevLK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 16 VEVLKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555555555555555555443
No 192
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=71.33 E-value=26 Score=34.95 Aligned_cols=59 Identities=32% Similarity=0.351 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159 101 RMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 101 R~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l 160 (201)
..-=+..+++|..++..+..+...|..++..+.........++..|.+++. +..++.+|
T Consensus 330 l~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~-l~~k~~~l 388 (594)
T PF05667_consen 330 LEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK-LKKKTVEL 388 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 333456788888899999999999988888888888888888888887776 55555444
No 193
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=71.32 E-value=14 Score=26.17 Aligned_cols=30 Identities=23% Similarity=0.358 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 108 LDELWSHVVRLRTENHNLIDKLNHVSESHD 137 (201)
Q Consensus 108 l~eLe~qV~~L~~EN~~L~~el~~L~~~~~ 137 (201)
+++||.++..+...-..++++++.++...+
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve 31 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVE 31 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666555555555555444433
No 194
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=71.16 E-value=33 Score=30.27 Aligned_cols=52 Identities=23% Similarity=0.313 Sum_probs=28.8
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 105 QRHLDEL---WSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQM 156 (201)
Q Consensus 105 q~~l~eL---e~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~ 156 (201)
..|+++| ..-+..|+.....+..+..........+..|=..|+.++.++|..
T Consensus 49 ~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 49 MAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444 344455555555555555555555555666666666666666555
No 195
>PRK04863 mukB cell division protein MukB; Provisional
Probab=71.09 E-value=67 Score=35.56 Aligned_cols=20 Identities=5% Similarity=-0.029 Sum_probs=11.8
Q ss_pred HHHHHHHHhHHHHHHHHHHH
Q 043159 85 RKQRRMISNRESARRSRMRK 104 (201)
Q Consensus 85 RR~RR~lsNRESARRSR~RK 104 (201)
++.+.+.+.++.|++.+.-+
T Consensus 321 ~rL~kLEkQaEkA~kyleL~ 340 (1486)
T PRK04863 321 EAESDLEQDYQAASDHLNLV 340 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455666677777665543
No 196
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=71.07 E-value=37 Score=31.47 Aligned_cols=34 Identities=15% Similarity=0.296 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 118 LRTENHNLIDKLNHVSESHDRVLQENARLREEAS 151 (201)
Q Consensus 118 L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~ 151 (201)
.+.|...|..++..+..++..+..||..|...+.
T Consensus 232 QQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~ 265 (306)
T PF04849_consen 232 QQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQ 265 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3344555777777777778888888877766654
No 197
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=70.99 E-value=58 Score=28.14 Aligned_cols=46 Identities=17% Similarity=0.279 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 111 LWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQM 156 (201)
Q Consensus 111 Le~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~ 156 (201)
+..-...+..||..|..++..+.+.+..|...+..|..+-..|.+.
T Consensus 154 l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~e 199 (206)
T PF14988_consen 154 LDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQE 199 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344456677777777777777777777777777777776666654
No 198
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=70.98 E-value=12 Score=29.69 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 135 SHDRVLQENARLREEASDLRQMLTE 159 (201)
Q Consensus 135 ~~~~l~~EN~~Lrael~~Lr~~L~~ 159 (201)
+...|+.||.-||-++.-|-.+|..
T Consensus 80 k~~~LeEENNlLklKievLLDMLte 104 (108)
T cd07429 80 KNQQLEEENNLLKLKIEVLLDMLAE 104 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555555555555555544
No 199
>PHA03155 hypothetical protein; Provisional
Probab=70.79 E-value=5.9 Score=31.88 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 106 RHLDELWSHVVRLRTENHNLIDKLNH 131 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~el~~ 131 (201)
.-+++|..++..|+-||..|+.++..
T Consensus 8 ~tvEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 8 ADVEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34799999999999999999999864
No 200
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=70.62 E-value=35 Score=25.91 Aligned_cols=32 Identities=19% Similarity=0.238 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 124 NLIDKLNHVSESHDRVLQENARLREEASDLRQ 155 (201)
Q Consensus 124 ~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~ 155 (201)
.+......|...+..+..+|..|..++.++|+
T Consensus 77 ~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 77 YKKKEREQLNARLQELEEENEALAEEIQEQRK 108 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34566777888888999999999999998875
No 201
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=70.47 E-value=60 Score=34.94 Aligned_cols=81 Identities=23% Similarity=0.307 Sum_probs=69.5
Q ss_pred chHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159 81 IIDERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 81 ~~deRR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l 160 (201)
..-.|..+-.+.||+--..--+++-..+++++.+...|+.++..|..+++.|.+.+..+...+..|...-..|.-....|
T Consensus 369 Lts~ralkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl 448 (1195)
T KOG4643|consen 369 LTSDRALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKL 448 (1195)
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456778889999999999999999999999999999999999999999999999999888888887777776666666
Q ss_pred h
Q 043159 161 Q 161 (201)
Q Consensus 161 ~ 161 (201)
+
T Consensus 449 ~ 449 (1195)
T KOG4643|consen 449 L 449 (1195)
T ss_pred H
Confidence 5
No 202
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=70.44 E-value=19 Score=25.83 Aligned_cols=31 Identities=19% Similarity=0.249 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 103 RKQRHLDELWSHVVRLRTENHNLIDKLNHVS 133 (201)
Q Consensus 103 RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~ 133 (201)
.....+..++.+++.++.+|..|+.++..+.
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4566777888888888888888888777654
No 203
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=70.25 E-value=81 Score=28.21 Aligned_cols=34 Identities=21% Similarity=0.282 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRV 139 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l 139 (201)
..+..|..++..+...-..|..++..+......+
T Consensus 89 ~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l 122 (239)
T COG1579 89 RELRALNIEIQIAKERINSLEDELAELMEEIEKL 122 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444433333333333333333333
No 204
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=70.11 E-value=14 Score=34.26 Aligned_cols=67 Identities=24% Similarity=0.342 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159 95 ESARRSRMRKQRHLDELWSHVVRLRTENHNLID--------------KLNHVSESHDRVLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 95 ESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~--------------el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l 160 (201)
+..|.-|..=+..++.|..+...|+.....+.. ....|..-+.....+|..|..++..|+++|.++
T Consensus 19 e~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~ 98 (319)
T PF09789_consen 19 EKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKLNEA 98 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555566666665566555554441 222333444445555666666666666666555
Q ss_pred h
Q 043159 161 Q 161 (201)
Q Consensus 161 ~ 161 (201)
+
T Consensus 99 q 99 (319)
T PF09789_consen 99 Q 99 (319)
T ss_pred h
Confidence 5
No 205
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=70.09 E-value=10 Score=32.70 Aligned_cols=44 Identities=16% Similarity=0.249 Sum_probs=28.9
Q ss_pred chHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 81 IIDERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLN 130 (201)
Q Consensus 81 ~~deRR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~ 130 (201)
.-+-.|.+|..+++ -...+.++.||+.+|..|+.+.+.+...+.
T Consensus 87 v~Ey~R~~~~e~~k------ee~~~~e~~elr~~~~~l~~~i~~~~~~~~ 130 (181)
T KOG3335|consen 87 VFEYWRQARKERKK------EEKRKQEIMELRLKVEKLENAIAELTKFFS 130 (181)
T ss_pred eehhHHhhhcchhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777766 345567788888888888775554444444
No 206
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=70.05 E-value=76 Score=27.84 Aligned_cols=34 Identities=21% Similarity=0.352 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 102 MRKQRHLDELWSHVVRLRTENHNLIDKLNHVSES 135 (201)
Q Consensus 102 ~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~ 135 (201)
.+-+..+..|..++..|+..|..|...+..+...
T Consensus 219 ~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~ 252 (312)
T PF00038_consen 219 KELRRQIQSLQAELESLRAKNASLERQLRELEQR 252 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHhhhhhhccccchhhhhhhHHHHHHH
Confidence 3444556666666666666666666666655443
No 207
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=69.93 E-value=25 Score=27.13 Aligned_cols=29 Identities=24% Similarity=0.422 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 107 HLDELWSHVVRLRTENHNLIDKLNHVSES 135 (201)
Q Consensus 107 ~l~eLe~qV~~L~~EN~~L~~el~~L~~~ 135 (201)
.+..++.+--.+...|++|..++..+.++
T Consensus 18 ~L~~v~~~~l~l~~~n~el~~el~~l~~~ 46 (106)
T PF05837_consen 18 KLSDVEKKRLRLKRRNQELAQELLELAEK 46 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555443
No 208
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=69.82 E-value=90 Score=30.45 Aligned_cols=28 Identities=25% Similarity=0.223 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 104 KQRHLDELWSHVVRLRTENHNLIDKLNH 131 (201)
Q Consensus 104 Kq~~l~eLe~qV~~L~~EN~~L~~el~~ 131 (201)
=++++.++|.++..|+.||.+|..+.-.
T Consensus 46 i~a~~~~~E~~l~~Lq~e~~~l~e~~v~ 73 (459)
T KOG0288|consen 46 IKAKLQEKELELNRLQEENTQLNEERVR 73 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888999999999999988877554
No 209
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=69.67 E-value=46 Score=25.17 Aligned_cols=52 Identities=21% Similarity=0.255 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQML 157 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L 157 (201)
+.+++|...|..|.....+|....+.+.........|+.+-++++.......
T Consensus 25 aK~dqlss~vq~LnAkv~qLe~dv~a~~~~~qAAk~eaarAn~rldn~a~s~ 76 (78)
T COG4238 25 AKIDQLSSDVQTLNAKVDQLENDVNAMRSDVQAAKDEAARANQRLDNQAQSY 76 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHh
Confidence 4567788888888888888888888888888888888888888887766554
No 210
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=69.40 E-value=88 Score=28.32 Aligned_cols=51 Identities=18% Similarity=0.265 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 111 LWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 111 Le~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
...-+.....+|..+..++..-++..+.+..+...|++++..|+....+..
T Consensus 177 ~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~~~R 227 (258)
T PF15397_consen 177 MQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQDPR 227 (258)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchH
Confidence 344556677899999999999999999999999999999999988877443
No 211
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=69.31 E-value=28 Score=34.64 Aligned_cols=55 Identities=22% Similarity=0.274 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 107 HLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 107 ~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
....|+.++..|+.||..|..+|..++...+.-..--..+.-++..|...|..+.
T Consensus 163 r~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~ 217 (546)
T KOG0977|consen 163 RIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLK 217 (546)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3445556666677777777777666665444332222222233344444444443
No 212
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=69.14 E-value=51 Score=25.43 Aligned_cols=57 Identities=23% Similarity=0.284 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159 104 KQRHLDELWSHVVRLRTENHNLIDKLNHV--SESHDRVLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 104 Kq~~l~eLe~qV~~L~~EN~~L~~el~~L--~~~~~~l~~EN~~Lrael~~Lr~~L~~l 160 (201)
|+..++.|..++......-+.+..+++.+ ....+.|..+=..++.++.++..+|..+
T Consensus 33 ~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 33 KREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34555555444444444444444444444 3444444444444444444444444433
No 213
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=68.73 E-value=71 Score=36.40 Aligned_cols=55 Identities=31% Similarity=0.510 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 107 HLDELWSHVVRLRTENHNLIDKLNHVS-------ESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 107 ~l~eLe~qV~~L~~EN~~L~~el~~L~-------~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
.++++-.+++.|+.+|..|..++..+. ...+.++..++.|-.++.+|+..|.++.
T Consensus 1478 ~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE 1539 (1930)
T KOG0161|consen 1478 ALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELE 1539 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555554443 3355566666666677777777776665
No 214
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=68.72 E-value=79 Score=27.48 Aligned_cols=46 Identities=17% Similarity=0.276 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159 115 VVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 115 V~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l 160 (201)
+.-|+.|-..|+..++.=+.....++.|+..+...+.+=+.++..+
T Consensus 136 t~lLEkEReRLkq~lE~Ek~~~~~~EkE~~K~~~~l~eE~~k~K~~ 181 (192)
T PF09727_consen 136 TNLLEKERERLKQQLEQEKAQQKKLEKEHKKLVSQLEEERTKLKSF 181 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568888889999888888888999999888777776655555443
No 215
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=68.63 E-value=41 Score=31.14 Aligned_cols=29 Identities=24% Similarity=0.402 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHh
Q 043159 132 VSESHDRVLQEN--ARLREEASDLRQMLTEL 160 (201)
Q Consensus 132 L~~~~~~l~~EN--~~Lrael~~Lr~~L~~l 160 (201)
+.++|++|+++= .+-|.++..|++.+..|
T Consensus 106 IEEECHRVEAQLALKEARkEIkQLkQvieTm 136 (305)
T PF15290_consen 106 IEEECHRVEAQLALKEARKEIKQLKQVIETM 136 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566665542 23344445555555444
No 216
>PF10506 MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for Usher syndrome; InterPro: IPR019536 The entry represents a protein that has a high homology to the tumour suppressor Usher syndrome type-1C protein-binding protein 1, or known as MCC2 (mutated in colon cancer). MCC2 protein binds the first PDZ domain of AIE-75 with its C-terminal amino acids -DTFL. A possible role of MCC2 as a tumour suppressor has been put forward. The carboxyl terminus of the predicted protein was DTFL which matched the consensus motif X-S/T-X-phi (phi: hydrophobic amino acid residue) for binding to the PDZ domain of AIE-75 [, ].
Probab=68.50 E-value=35 Score=24.90 Aligned_cols=48 Identities=19% Similarity=0.300 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 110 ELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQML 157 (201)
Q Consensus 110 eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L 157 (201)
.|...+++|+..|..|...++.-+.++..+.....+-.+.+.+|+-++
T Consensus 2 rL~~~ie~L~~~n~~L~~~le~~k~~se~Ls~~lgk~es~~~alrlal 49 (67)
T PF10506_consen 2 RLKRRIEELKSQNEMLSSTLEERKQQSEELSMDLGKYESNATALRLAL 49 (67)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 466777788888888888777777777777666655555555554444
No 217
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=68.38 E-value=58 Score=30.27 Aligned_cols=65 Identities=20% Similarity=0.216 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 94 RESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLT 158 (201)
Q Consensus 94 RESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~ 158 (201)
-|+++|-....+.++.+++.-...=+..-..-..+-+.+.+++..+..||..|++++.+...+..
T Consensus 181 lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~ 245 (305)
T PF14915_consen 181 LESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKAD 245 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777788888877665555555555666677888888899999999999887766553
No 218
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=68.14 E-value=25 Score=27.39 Aligned_cols=38 Identities=18% Similarity=0.351 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 117 RLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLR 154 (201)
Q Consensus 117 ~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr 154 (201)
.|...+..|..++..+..++..+..+...+.+++..|+
T Consensus 77 ~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk 114 (118)
T PF13815_consen 77 YLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLK 114 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444443
No 219
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=67.94 E-value=33 Score=30.04 Aligned_cols=46 Identities=24% Similarity=0.310 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhc
Q 043159 117 RLRTENHNLIDKLNHVSESHDRVLQENARLREEAS---DLRQMLTELQL 162 (201)
Q Consensus 117 ~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~---~Lr~~L~~l~~ 162 (201)
..-.||..|..+++.+.+.+..+..||..|++-.. .|...|..|..
T Consensus 122 eaL~ENe~Lh~~ie~~~eEi~~lk~en~~L~elae~~~~la~~ie~l~~ 170 (200)
T PF07412_consen 122 EALEENEKLHKEIEQKDEEIAKLKEENEELKELAEHVQYLAEVIERLTG 170 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34467888888888888888888899988776544 45566666653
No 220
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=67.86 E-value=39 Score=34.29 Aligned_cols=29 Identities=21% Similarity=0.234 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 106 RHLDELWSHVVRLRTENHNLIDKLNHVSE 134 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~ 134 (201)
.+..+|+..+.+|+.++..|..++..+..
T Consensus 436 ~e~~~L~~~~ee~k~eie~L~~~l~~~~r 464 (652)
T COG2433 436 EENSELKRELEELKREIEKLESELERFRR 464 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555443
No 221
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=67.83 E-value=38 Score=25.90 Aligned_cols=41 Identities=17% Similarity=0.369 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Q 043159 112 WSHVVRLRTENHNLIDKLNHVSESHDR--VLQENARLREEASD 152 (201)
Q Consensus 112 e~qV~~L~~EN~~L~~el~~L~~~~~~--l~~EN~~Lrael~~ 152 (201)
.=++..++.+|+.|..+++.+..+... ...+|...|.+-.+
T Consensus 22 ~~k~~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn~~vrqknee 64 (87)
T PF10883_consen 22 WWKVKKAKKQNAKLQKENEQLKTEKAVAETQVKNAKVRQKNEE 64 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 334444444454444444444432222 23345555555443
No 222
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=67.74 E-value=27 Score=26.82 Aligned_cols=25 Identities=36% Similarity=0.417 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 108 LDELWSHVVRLRTENHNLIDKLNHV 132 (201)
Q Consensus 108 l~eLe~qV~~L~~EN~~L~~el~~L 132 (201)
+.+|+.++..|..||..|+.++...
T Consensus 51 v~~L~~e~~~l~~E~e~L~~~l~~e 75 (87)
T PF12709_consen 51 VDELENENKALKRENEQLKKKLDTE 75 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444333
No 223
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=67.72 E-value=33 Score=27.16 Aligned_cols=43 Identities=14% Similarity=0.225 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 111 LWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDL 153 (201)
Q Consensus 111 Le~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~L 153 (201)
|...-.....+-..|..++..+..++..|..+|..|..++..+
T Consensus 89 l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 89 LEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3333334444555677777788888888888888888887654
No 224
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=67.62 E-value=16 Score=27.47 Aligned_cols=25 Identities=36% Similarity=0.517 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 137 DRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 137 ~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
+.+..||.+|+.++.+|.+.|+.+.
T Consensus 3 ~ei~eEn~~Lk~eiqkle~ELq~~~ 27 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKLEAELQQNK 27 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888888876666666654
No 225
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.03 E-value=48 Score=30.15 Aligned_cols=60 Identities=18% Similarity=0.310 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 102 MRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 102 ~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
..+...+.+++..+..++.+.+.|..+++.+..+.+.+..++.++++++..|...|..+.
T Consensus 34 ~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~ 93 (265)
T COG3883 34 QNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELK 93 (265)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667778888888888888888888888888888888888887777777777777765
No 226
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=66.75 E-value=41 Score=33.99 Aligned_cols=44 Identities=9% Similarity=0.146 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 102 MRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENAR 145 (201)
Q Consensus 102 ~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~ 145 (201)
.+.+..|+.++.++..-+.+-.....++..+..+..-|.+-+.+
T Consensus 96 ~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~ 139 (632)
T PF14817_consen 96 QELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQ 139 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444466666665555555555555555544443333333333
No 227
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=66.70 E-value=43 Score=23.75 Aligned_cols=48 Identities=19% Similarity=0.308 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159 113 SHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 113 ~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l 160 (201)
.+|.+|..+.+.|..++..|......+..+=...++|...--++|...
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~ 50 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNI 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 466677777777777777776666666666666666666655555443
No 228
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=66.54 E-value=25 Score=35.57 Aligned_cols=28 Identities=29% Similarity=0.398 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 108 LDELWSHVVRLRTENHNLIDKLNHVSES 135 (201)
Q Consensus 108 l~eLe~qV~~L~~EN~~L~~el~~L~~~ 135 (201)
+..++..|+.|+.||+.|..++..++..
T Consensus 424 i~~~~~~ve~l~~e~~~L~~~~ee~k~e 451 (652)
T COG2433 424 IKKLEETVERLEEENSELKRELEELKRE 451 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444333
No 229
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=66.44 E-value=68 Score=25.92 Aligned_cols=55 Identities=27% Similarity=0.326 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043159 108 LDELWSHVVRLRTENHNLIDKL-NHVSESHDRVLQENARLREEASDLRQMLTELQL 162 (201)
Q Consensus 108 l~eLe~qV~~L~~EN~~L~~el-~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~~ 162 (201)
+..+..++..|+..+..|..+. ..++....-|..==.-|-..+..++.+|..++.
T Consensus 57 ~~~~~~~~~~l~~~~~kl~~E~~~~~q~EldDLL~ll~Dle~K~~kyk~rLk~LG~ 112 (136)
T PF04871_consen 57 LEELASEVKELEAEKEKLKEEARKEAQSELDDLLVLLGDLEEKRKKYKERLKELGE 112 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHcCC
Confidence 4555555555555555554433 233333333332223344556667777777774
No 230
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=66.42 E-value=38 Score=34.75 Aligned_cols=53 Identities=23% Similarity=0.221 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159 108 LDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 108 l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l 160 (201)
.+.|+.+...|+.|-.+++-+=..+.+.+..|+.||-.|..++..|++-=..+
T Consensus 71 ~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQvef 123 (717)
T PF09730_consen 71 CEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQVEF 123 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 33444444444444444444444555556666777777777776666543333
No 231
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.25 E-value=50 Score=34.76 Aligned_cols=66 Identities=12% Similarity=0.153 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 96 SARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 96 SARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
.-.--+.+-...++.|...+..|+.||.+|..++......+.++..++.-||.++...+....+|-
T Consensus 661 kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~ 726 (970)
T KOG0946|consen 661 KYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLL 726 (970)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHH
Confidence 334444555666666777777777777777777777777777777777777777665554444443
No 232
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=65.46 E-value=45 Score=25.98 Aligned_cols=38 Identities=18% Similarity=0.338 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159 123 HNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 123 ~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l 160 (201)
+.|...+..+.+.+..+..++..|+..+.++...+..+
T Consensus 76 ~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~l 113 (118)
T PF13815_consen 76 EYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKL 113 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444443
No 233
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=65.41 E-value=34 Score=35.29 Aligned_cols=46 Identities=22% Similarity=0.276 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 106 RHLDELWSHVVRLRTENHNLID---------------------KLNHVSESHDRVLQENARLREEAS 151 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~---------------------el~~L~~~~~~l~~EN~~Lrael~ 151 (201)
.+|.++..++..+..||..|.. ++..|..+++.++.||..||-++.
T Consensus 92 ~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~ 158 (769)
T PF05911_consen 92 AKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELH 158 (769)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777776654 345566677777888887777763
No 234
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=65.39 E-value=68 Score=32.26 Aligned_cols=51 Identities=14% Similarity=0.318 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 109 DELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTE 159 (201)
Q Consensus 109 ~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~ 159 (201)
.....=|..+...++.+-..++.++..+...+.|+..|+++...|+..|..
T Consensus 276 nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~ 326 (581)
T KOG0995|consen 276 NKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIEL 326 (581)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444455555555555555555555555555555555555554443
No 235
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=65.32 E-value=57 Score=26.82 Aligned_cols=56 Identities=23% Similarity=0.428 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
..+++....+..|...-.....+-..+...|..|..|...|..-..++..+|.-..
T Consensus 21 ~~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~ 76 (157)
T PF04136_consen 21 DQTDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQYFE 76 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Confidence 34555555666666666666666777777888999999999999999998887765
No 236
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=65.06 E-value=40 Score=33.07 Aligned_cols=59 Identities=10% Similarity=0.211 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043159 104 KQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQL 162 (201)
Q Consensus 104 Kq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~~ 162 (201)
-+..+.+-+.++++|+.+-..|+.+++.+..+...++.+=..|.+++..|+.++..+..
T Consensus 67 nqSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~ 125 (475)
T PRK13729 67 RQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGA 125 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 34557788888889999888888888877777777777777888888888888866553
No 237
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=64.88 E-value=52 Score=33.62 Aligned_cols=57 Identities=21% Similarity=0.212 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 105 QRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 105 q~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
...+.+||.+-.+|..|.+++..+++.+++.+.+...|=.+|+-+++.-+..+.++-
T Consensus 92 s~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~ 148 (907)
T KOG2264|consen 92 SLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELR 148 (907)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHH
Confidence 357888888989999999999999999999888888888899999988888887765
No 238
>PHA03011 hypothetical protein; Provisional
Probab=64.61 E-value=62 Score=25.96 Aligned_cols=56 Identities=21% Similarity=0.206 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159 105 QRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 105 q~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l 160 (201)
+..+++|..+-..|-.|-.-+..+...+..-.+.-..|=.-|++++.+|...+..+
T Consensus 63 ~e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~niaN~ 118 (120)
T PHA03011 63 IEILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIANL 118 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhcc
Confidence 45678888888888888888887777766655555555566777777777666543
No 239
>PRK15396 murein lipoprotein; Provisional
Probab=63.97 E-value=58 Score=24.40 Aligned_cols=45 Identities=20% Similarity=0.289 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 107 HLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEAS 151 (201)
Q Consensus 107 ~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~ 151 (201)
.++.|..+|..|..+-.+|...+..++........|=.+-.+++.
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlD 70 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLD 70 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777777777666655555444333333333
No 240
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=63.84 E-value=1.4e+02 Score=28.61 Aligned_cols=48 Identities=10% Similarity=0.048 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043159 115 VVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQL 162 (201)
Q Consensus 115 V~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~~ 162 (201)
+..+..-...+..++..+..+...+..+=..|++++.+|+++|..+..
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 126 LKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344555556666677777777777777778888888888888877763
No 241
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=63.84 E-value=1e+02 Score=32.80 Aligned_cols=60 Identities=20% Similarity=0.107 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 93 NRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASD 152 (201)
Q Consensus 93 NRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~ 152 (201)
--++|+.+.....+...+|..+|..+..+-..+..+.+.....+.++.+|=..|-.+++.
T Consensus 453 Qle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~ 512 (980)
T KOG0980|consen 453 QLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEE 512 (980)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455554444444444444444444444443333333333333333333333333333
No 242
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=63.78 E-value=72 Score=27.45 Aligned_cols=28 Identities=14% Similarity=0.335 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159 133 SESHDRVLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 133 ~~~~~~l~~EN~~Lrael~~Lr~~L~~l 160 (201)
..+...+...|-.+...+..|++.+..+
T Consensus 181 e~~W~~~v~kn~eie~a~~~Le~ei~~l 208 (221)
T PF05700_consen 181 EQRWKELVSKNLEIEVACEELEQEIEQL 208 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444433
No 243
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=63.57 E-value=60 Score=24.74 Aligned_cols=44 Identities=18% Similarity=0.261 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 109 DELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASD 152 (201)
Q Consensus 109 ~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~ 152 (201)
..+...+.+|..--..|..+...|..++..|...|++.|.+..+
T Consensus 29 ~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~ 72 (83)
T PF03670_consen 29 AAINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQE 72 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444555566667666655543
No 244
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=63.29 E-value=1e+02 Score=30.29 Aligned_cols=74 Identities=22% Similarity=0.271 Sum_probs=45.0
Q ss_pred HHHHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 88 RRMISNRESARRSRMRKQRH----LDELWSHVVRLRTENHNLIDKLNHVSES----HDRVLQENARLREEASDLRQMLTE 159 (201)
Q Consensus 88 RR~lsNRESARRSR~RKq~~----l~eLe~qV~~L~~EN~~L~~el~~L~~~----~~~l~~EN~~Lrael~~Lr~~L~~ 159 (201)
+-..+|=++++.+=.||.++ ++.+..+...++.+|..|.........+ .......+....+++.+|..+|.+
T Consensus 367 ~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrD 446 (493)
T KOG0804|consen 367 KQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRD 446 (493)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556677777777666554 4556667777777777766655444333 333344455556666777777776
Q ss_pred hh
Q 043159 160 LQ 161 (201)
Q Consensus 160 l~ 161 (201)
+-
T Consensus 447 lm 448 (493)
T KOG0804|consen 447 LM 448 (493)
T ss_pred Hh
Confidence 64
No 245
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=62.90 E-value=1.1e+02 Score=32.50 Aligned_cols=53 Identities=28% Similarity=0.366 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 105 QRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQML 157 (201)
Q Consensus 105 q~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L 157 (201)
+.+++++..++..|......+..++..+.+.+..+..+-..++.++..++.++
T Consensus 438 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 490 (1163)
T COG1196 438 QTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARL 490 (1163)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555555555555555555555555555443
No 246
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=62.52 E-value=57 Score=29.98 Aligned_cols=59 Identities=20% Similarity=0.222 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hcCCCC
Q 043159 108 LDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTEL----QLSSPY 166 (201)
Q Consensus 108 l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l----~~~~~~ 166 (201)
++-|..++..++....+|.+++......+..+-.....|+.++..|+..|... ..|+-.
T Consensus 114 vd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli~khGlV 176 (302)
T PF09738_consen 114 VDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDELIEKHGLV 176 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCee
Confidence 34444455555555555555555444445555566677777788888777655 345554
No 247
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=62.20 E-value=22 Score=34.73 Aligned_cols=58 Identities=24% Similarity=0.269 Sum_probs=46.5
Q ss_pred HhhcchHHHHHHHHHHhHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 77 QQLRIIDERKQRRMISNRESARRSRMRKQR----------HLDELWSHVVRLRTENHNLIDKLNHVSE 134 (201)
Q Consensus 77 ~~~~~~deRR~RR~lsNRESARRSR~RKq~----------~l~eLe~qV~~L~~EN~~L~~el~~L~~ 134 (201)
++.-....||.|-|++--||-|+.+.==.. .=.+|+.+|.+|+.+|..|..++..++.
T Consensus 247 EriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt 314 (472)
T KOG0709|consen 247 ERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQT 314 (472)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 334567888888999999999998865443 3358999999999999999999886654
No 248
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=62.18 E-value=2.5 Score=37.66 Aligned_cols=41 Identities=22% Similarity=0.324 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARL 146 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~L 146 (201)
..|+|...++..|+.-...|..+++.|++...+|.+||.+|
T Consensus 122 T~IEEQ~T~I~dLrrlVe~L~aeNErLr~EnkqL~ae~arL 162 (243)
T PF08961_consen 122 TRIEEQATKIADLRRLVEFLLAENERLRRENKQLKAENARL 162 (243)
T ss_dssp -----------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555566666666
No 249
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=61.43 E-value=1.2e+02 Score=26.82 Aligned_cols=50 Identities=26% Similarity=0.306 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 110 ELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTE 159 (201)
Q Consensus 110 eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~ 159 (201)
.|+.+......+...|..++..+......+..+...-..+...|+..|..
T Consensus 65 rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ 114 (246)
T PF00769_consen 65 RLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEE 114 (246)
T ss_dssp HHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444455555555554444444444444444444444333
No 250
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=61.31 E-value=69 Score=27.12 Aligned_cols=56 Identities=13% Similarity=0.143 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhh
Q 043159 106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDR-VLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~-l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
..+++|+..++.|......+.+.+.-+..++.+ ...+=..|..++.+|...+....
T Consensus 79 eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~el~~i~emv~ 135 (157)
T COG3352 79 EELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNELKMIVEMVI 135 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567888888888888888888888777654332 33356677777777776666555
No 251
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=61.10 E-value=58 Score=36.85 Aligned_cols=64 Identities=20% Similarity=0.265 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 98 RRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 98 RRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
|..+.+.-..+.+|..+|..|+.+-..|...+..+..++....+|+..|+.+...+.++.+++-
T Consensus 1235 Ree~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~ 1298 (1822)
T KOG4674|consen 1235 REENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLL 1298 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566667777777777777777777777777777777777777777766666666554
No 252
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=60.88 E-value=68 Score=29.29 Aligned_cols=35 Identities=26% Similarity=0.240 Sum_probs=16.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 90 MISNRESARRSRMRKQRHLDELWSHVVRLRTENHN 124 (201)
Q Consensus 90 ~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~ 124 (201)
....-+.|+..=..++..+.+++.++..|+.+-..
T Consensus 226 a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~ 260 (344)
T PF12777_consen 226 AEAELEEAEEQLAEKQAELAELEEKLAALQKEYEE 260 (344)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444555555555555555544433
No 253
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=60.84 E-value=1.3e+02 Score=32.53 Aligned_cols=32 Identities=25% Similarity=0.267 Sum_probs=14.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 92 SNRESARRSRMRKQRHLDELWSHVVRLRTENH 123 (201)
Q Consensus 92 sNRESARRSR~RKq~~l~eLe~qV~~L~~EN~ 123 (201)
+..++.+.-+.+++..+..|+.++..+..+..
T Consensus 843 ~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~kl 874 (1311)
T TIGR00606 843 SKIELNRKLIQDQQEQIQHLKSKTNELKSEKL 874 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555444444433333
No 254
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=60.72 E-value=1.4e+02 Score=28.40 Aligned_cols=22 Identities=36% Similarity=0.493 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 043159 139 VLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 139 l~~EN~~Lrael~~Lr~~L~~l 160 (201)
+..|-..|++++.+|...+..+
T Consensus 71 l~~~~~~l~~~~~~~~~~~~~~ 92 (425)
T PRK05431 71 LIAEVKELKEEIKALEAELDEL 92 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555444443
No 255
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=60.53 E-value=95 Score=25.57 Aligned_cols=9 Identities=22% Similarity=0.316 Sum_probs=3.3
Q ss_pred HHHHHHHHh
Q 043159 152 DLRQMLTEL 160 (201)
Q Consensus 152 ~Lr~~L~~l 160 (201)
.|.+.+..+
T Consensus 84 ~L~k~lq~~ 92 (140)
T PF10473_consen 84 NLDKELQKK 92 (140)
T ss_pred HHHHHHHHH
Confidence 333333333
No 256
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.51 E-value=68 Score=23.91 Aligned_cols=50 Identities=20% Similarity=0.126 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043159 106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQL 162 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~~ 162 (201)
+++.+||.+++.-+.-..+|...+.... ..=.++++++..|..++.+++.
T Consensus 8 ~Ri~eLE~r~AfQE~tieeLn~~laEq~-------~~i~k~q~qlr~L~~kl~~~~~ 57 (72)
T COG2900 8 ARIIELEIRLAFQEQTIEELNDALAEQQ-------LVIDKLQAQLRLLTEKLKDLQP 57 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhcc
Confidence 4677777777766665555554444322 2334566788888888888884
No 257
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=60.48 E-value=64 Score=28.70 Aligned_cols=42 Identities=14% Similarity=0.295 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 118 LRTENHNLIDKLNHVS-ESHDRVLQENARLREEASDLRQMLTE 159 (201)
Q Consensus 118 L~~EN~~L~~el~~L~-~~~~~l~~EN~~Lrael~~Lr~~L~~ 159 (201)
++..-..++.++..+. .+...|.+||..|+-+++.++..|..
T Consensus 99 Q~~~f~kiRsel~S~e~sEF~~lr~e~EklkndlEk~ks~lr~ 141 (220)
T KOG3156|consen 99 QKVDFAKIRSELVSIERSEFANLRAENEKLKNDLEKLKSSLRH 141 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555554 46778888888888888888777754
No 258
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=60.46 E-value=1.2e+02 Score=28.51 Aligned_cols=81 Identities=20% Similarity=0.300 Sum_probs=39.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH-------HHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 84 ERKQRRMISNRESARRSRMRKQRHL-------DEL------------------WSHVVRLRTENHNLIDKLNHVSESHDR 138 (201)
Q Consensus 84 eRR~RR~lsNRESARRSR~RKq~~l-------~eL------------------e~qV~~L~~EN~~L~~el~~L~~~~~~ 138 (201)
.++.|+++++|...-..=+||..++ ++| ..+|--|+.++++|..+|..+..+++.
T Consensus 121 ~~e~r~~lk~RI~rSEAFKRKllE~kYD~~mL~qLr~g~~~~~~~~~~~~~~~~D~v~LLqkk~~~l~~~l~~~~~eL~~ 200 (323)
T PF08537_consen 121 GREERRLLKDRILRSEAFKRKLLEKKYDKRMLEQLRRGRSKNRHNRPRNPSSNSDRVILLQKKIDELEERLNDLEKELEI 200 (323)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455567777776655555554332 222 124445555555555555555554444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCC
Q 043159 139 VLQENARLREEASDLRQMLTELQLSS 164 (201)
Q Consensus 139 l~~EN~~Lrael~~Lr~~L~~l~~~~ 164 (201)
+...=.--.+...-|+..|.++++..
T Consensus 201 ~~k~L~faqekn~LlqslLddaniD~ 226 (323)
T PF08537_consen 201 TKKDLKFAQEKNALLQSLLDDANIDS 226 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccH
Confidence 33322222333344555555665543
No 259
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=60.39 E-value=1.2e+02 Score=27.21 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCC
Q 043159 145 RLREEASDLRQMLTELQLSSPYT 167 (201)
Q Consensus 145 ~Lrael~~Lr~~L~~l~~~~~~~ 167 (201)
.+++++..++..+....+.+|++
T Consensus 257 ~~~~~l~~~~~~l~~~~i~AP~d 279 (423)
T TIGR01843 257 ELRERLNKARDRLQRLIIRSPVD 279 (423)
T ss_pred HHHHHHHHHHHHHhhcEEECCCC
Confidence 33444444445555555667764
No 260
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=60.05 E-value=1.3e+02 Score=32.03 Aligned_cols=14 Identities=21% Similarity=0.161 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 043159 145 RLREEASDLRQMLT 158 (201)
Q Consensus 145 ~Lrael~~Lr~~L~ 158 (201)
.|..++..|..+|+
T Consensus 448 tLn~k~qqls~kl~ 461 (1118)
T KOG1029|consen 448 TLNFKLQQLSGKLQ 461 (1118)
T ss_pred HHHHHHHHHhhhhh
Confidence 33333333333333
No 261
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=59.87 E-value=46 Score=31.30 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 043159 139 VLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 139 l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
+..+...++.++..++..|..++
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~ 63 (398)
T PTZ00454 41 IKEEQKNLKRELIRAKEEVKRIQ 63 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444444555555555554
No 262
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=59.86 E-value=1.1e+02 Score=30.35 Aligned_cols=57 Identities=18% Similarity=0.261 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 105 QRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 105 q~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
..++++|..++.........+..+...|..++...+.+...|..++..+.+.+..++
T Consensus 419 ~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~Lq 475 (518)
T PF10212_consen 419 MSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQ 475 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555555555555555555544444
No 263
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=59.62 E-value=89 Score=24.93 Aligned_cols=66 Identities=17% Similarity=0.210 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159 95 ESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 95 ESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l 160 (201)
+..--||.-.+..+..|+..++........|..+-..|......|.++|..+-.++.+|+++|.++
T Consensus 5 ~~l~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea 70 (107)
T PF09304_consen 5 EALEASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEA 70 (107)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555666677777777766666666666666666666666666666666666666666554
No 264
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=59.55 E-value=27 Score=26.21 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043159 107 HLDELWSHVVRLRTENHNLIDKL 129 (201)
Q Consensus 107 ~l~eLe~qV~~L~~EN~~L~~el 129 (201)
+++.|..++..|..+|..|+.++
T Consensus 76 ~i~~l~~ke~~l~~en~~L~~~~ 98 (100)
T PF01486_consen 76 QIEELKKKERELEEENNQLRQKI 98 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444455555555555554443
No 265
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=59.35 E-value=80 Score=24.34 Aligned_cols=58 Identities=12% Similarity=0.214 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 043159 108 LDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQLSSP 165 (201)
Q Consensus 108 l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~~~~~ 165 (201)
.+.+...+......|..|...+..-++........+.+++.+..+.+..+...-...+
T Consensus 34 n~~q~~tI~qq~~~~~~L~~~~~~~r~~~~~~~~~~qq~r~~~e~~~e~ik~~lk~d~ 91 (110)
T PF10828_consen 34 NKAQAQTIQQQEDANQELKAQLQQNRQAVEEQQKREQQLRQQSEERRESIKTALKDDP 91 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCc
Confidence 5556666777777788888888877777777888888999999999988877765444
No 266
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=59.32 E-value=95 Score=25.17 Aligned_cols=57 Identities=11% Similarity=0.237 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 105 QRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 105 q~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
.++++.|..++++...-....+.++..++.....+..+=..+..-+..|..+|..+.
T Consensus 67 sqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 67 SQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 366777777777777777777777777777777777777777777777777777665
No 267
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=59.30 E-value=70 Score=26.51 Aligned_cols=38 Identities=18% Similarity=0.421 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 118 LRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQ 155 (201)
Q Consensus 118 L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~ 155 (201)
...++..+..+++.+++++...+.|-..|+.+...|..
T Consensus 152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555666777777777777777777777777776654
No 268
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=59.23 E-value=78 Score=31.04 Aligned_cols=53 Identities=25% Similarity=0.249 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHH----------H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 102 MRKQRHLDELWSHVVR----------L----RTENHNLIDKLNHVSESHDRVLQENARLREEASDLR 154 (201)
Q Consensus 102 ~RKq~~l~eLe~qV~~----------L----~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr 154 (201)
.=|++|-++|+.+++. | ..+.+.++++++.|.+++.+.--||..|-..+.+-+
T Consensus 389 AMKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEaer 455 (593)
T KOG4807|consen 389 AMKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAER 455 (593)
T ss_pred HHHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888876642 2 234455666666666665555555554444444333
No 269
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=59.12 E-value=1.1e+02 Score=26.32 Aligned_cols=60 Identities=13% Similarity=0.148 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 102 MRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 102 ~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
.=|+.-++.|+.+|.+.+.-.++....|............--..-+.++..|...|...+
T Consensus 63 ~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~ 122 (188)
T PF05335_consen 63 AGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQ 122 (188)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368899999999999999888888888887777777776667777777777777776665
No 270
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=59.06 E-value=36 Score=27.79 Aligned_cols=42 Identities=17% Similarity=0.181 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 107 HLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLRE 148 (201)
Q Consensus 107 ~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lra 148 (201)
.+...|.-+..|+.+...=-.++..|+++++.+...|..|..
T Consensus 88 li~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lek 129 (131)
T PF04859_consen 88 LIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEK 129 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344445555556666555556666666666666666666654
No 271
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=59.02 E-value=1.1e+02 Score=26.03 Aligned_cols=52 Identities=8% Similarity=0.045 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 105 QRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQM 156 (201)
Q Consensus 105 q~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~ 156 (201)
.+.+..|+.++..++..-..|..++..|..++..+...-..|.++....+..
T Consensus 98 ~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~ 149 (219)
T TIGR02977 98 QELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSR 149 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777777777777777788777777777777767666666555543
No 272
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=58.99 E-value=47 Score=31.02 Aligned_cols=13 Identities=15% Similarity=0.457 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHhh
Q 043159 149 EASDLRQMLTELQ 161 (201)
Q Consensus 149 el~~Lr~~L~~l~ 161 (201)
++..|++.|..++
T Consensus 195 KIR~lq~~L~~~~ 207 (342)
T PF06632_consen 195 KIRELQRLLASAK 207 (342)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 3344444454444
No 273
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=58.86 E-value=32 Score=32.30 Aligned_cols=47 Identities=19% Similarity=0.282 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 115 VVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 115 V~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
|+.|+..|++|..+++.-.+++.-|..-|++=-.++.+|.+-+++|.
T Consensus 2 Vdd~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELE 48 (351)
T PF07058_consen 2 VDDVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELE 48 (351)
T ss_pred chhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777776666666666666666666666666654
No 274
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=58.83 E-value=41 Score=27.09 Aligned_cols=33 Identities=9% Similarity=0.040 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 110 ELWSHVVRLRTENHNLIDKLNHVSESHDRVLQE 142 (201)
Q Consensus 110 eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~E 142 (201)
||..+++.|+.|+..+..-...|...+.-|+..
T Consensus 29 EmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~a 61 (134)
T PF08232_consen 29 EMKARIAFLEGERRGQENLKKDLKRRIKMLEYA 61 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444443
No 275
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=58.57 E-value=1.2e+02 Score=26.03 Aligned_cols=33 Identities=36% Similarity=0.477 Sum_probs=20.6
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 96 SARRSRMRK-QRHLDELWSHVVRLRTENHNLIDK 128 (201)
Q Consensus 96 SARRSR~RK-q~~l~eLe~qV~~L~~EN~~L~~e 128 (201)
|||.-+.+. +-.+.+|..++..|..||..|+.-
T Consensus 8 Sar~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~l 41 (194)
T PF15619_consen 8 SARLHKIKELQNELAELQRKLQELRKENKTLKQL 41 (194)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466655554 345667777777777777766543
No 276
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=58.56 E-value=32 Score=30.04 Aligned_cols=38 Identities=16% Similarity=0.221 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 043159 121 ENHNLIDKLNHVSESHDRVLQENA---RLREEASDLRQMLT 158 (201)
Q Consensus 121 EN~~L~~el~~L~~~~~~l~~EN~---~Lrael~~Lr~~L~ 158 (201)
....|.+++..|++++..+..++. .|++|...|++.|.
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~ 110 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRLQELEQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344566677777766666666665 44555556665544
No 277
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=58.52 E-value=1.1e+02 Score=29.93 Aligned_cols=26 Identities=12% Similarity=0.164 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 111 LWSHVVRLRTENHNLIDKLNHVSESH 136 (201)
Q Consensus 111 Le~qV~~L~~EN~~L~~el~~L~~~~ 136 (201)
+.+.+...+.+...|+.++..+.+++
T Consensus 46 i~a~~~~~E~~l~~Lq~e~~~l~e~~ 71 (459)
T KOG0288|consen 46 IKAKLQEKELELNRLQEENTQLNEER 71 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555443
No 278
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=58.15 E-value=1.2e+02 Score=26.05 Aligned_cols=52 Identities=23% Similarity=0.296 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 101 RMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDL 153 (201)
Q Consensus 101 R~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~L 153 (201)
+.||..+++ ...++..|+..-..+..++-.+...|..|+.|-..|+.+..++
T Consensus 164 ~~RK~~Q~~-~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~ 215 (221)
T PF05700_consen 164 RERKRRQEE-AGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAEL 215 (221)
T ss_pred HHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444433 4445555555555555555555555555555444444444443
No 279
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=58.15 E-value=73 Score=24.54 Aligned_cols=32 Identities=16% Similarity=0.244 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 043159 134 ESHDRVLQENARLREEASDLRQMLTELQLSSP 165 (201)
Q Consensus 134 ~~~~~l~~EN~~Lrael~~Lr~~L~~l~~~~~ 165 (201)
.++..+..+-..-+....-++..+..+=.+|.
T Consensus 58 ~~l~~~~~~lk~~r~~~~v~k~v~q~lI~gSg 89 (106)
T PF05837_consen 58 EKLEKLEKELKKSRQRWRVMKNVFQALIVGSG 89 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33444444555555555555555555544443
No 280
>PRK03918 chromosome segregation protein; Provisional
Probab=58.08 E-value=2.1e+02 Score=28.76 Aligned_cols=6 Identities=17% Similarity=0.446 Sum_probs=2.1
Q ss_pred HHHHHH
Q 043159 110 ELWSHV 115 (201)
Q Consensus 110 eLe~qV 115 (201)
++..++
T Consensus 204 ~l~~ei 209 (880)
T PRK03918 204 EVLREI 209 (880)
T ss_pred HHHHHH
Confidence 333333
No 281
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=58.07 E-value=91 Score=26.72 Aligned_cols=33 Identities=30% Similarity=0.377 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 127 DKLNHVSESHDRVLQENARLREEASDLRQMLTE 159 (201)
Q Consensus 127 ~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~ 159 (201)
.++..-..+...+..++..|..++..|.++|.+
T Consensus 157 rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkE 189 (194)
T PF15619_consen 157 RQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKE 189 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455667777788888888888888765
No 282
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=57.79 E-value=1.1e+02 Score=31.21 Aligned_cols=10 Identities=30% Similarity=0.481 Sum_probs=4.3
Q ss_pred HHHHHHHHhh
Q 043159 152 DLRQMLTELQ 161 (201)
Q Consensus 152 ~Lr~~L~~l~ 161 (201)
+|...|.+|.
T Consensus 304 kL~N~i~eLk 313 (670)
T KOG0239|consen 304 KLHNEILELK 313 (670)
T ss_pred HHHHHHHHhh
Confidence 3444444444
No 283
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=57.58 E-value=57 Score=30.54 Aligned_cols=33 Identities=21% Similarity=0.244 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 043159 115 VVRLRTENHNLIDKLNHVSES---HDRVLQENARLR 147 (201)
Q Consensus 115 V~~L~~EN~~L~~el~~L~~~---~~~l~~EN~~Lr 147 (201)
.-.|..||++|+.++..|+.+ +..+..||..|+
T Consensus 59 y~~L~~EN~~Lk~Ena~L~~~l~~~e~l~~En~~Lr 94 (337)
T PRK14872 59 ALVLETENFLLKERIALLEERLKSYEEANQTPPLFS 94 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555432 334456666544
No 284
>PRK11546 zraP zinc resistance protein; Provisional
Probab=57.46 E-value=70 Score=26.55 Aligned_cols=53 Identities=23% Similarity=0.208 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 105 QRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQML 157 (201)
Q Consensus 105 q~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L 157 (201)
.....+|..++-.-+.|-..|...-..=.+++..|..|...|+.++.++|-.+
T Consensus 60 ~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~ 112 (143)
T PRK11546 60 YAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKR 112 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433333334557777888888888877665433
No 285
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=57.36 E-value=47 Score=34.14 Aligned_cols=47 Identities=26% Similarity=0.300 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159 114 HVVRLRTENHNLIDKLNHVSE---SHDRVLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 114 qV~~L~~EN~~L~~el~~L~~---~~~~l~~EN~~Lrael~~Lr~~L~~l 160 (201)
....|+.||-.|..++..|++ .+.++-.|+.+|.+++.-|..+|.++
T Consensus 98 dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~ 147 (717)
T PF09730_consen 98 DYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEA 147 (717)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777777777777764 35666666666666666666555443
No 286
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=57.22 E-value=1.2e+02 Score=26.71 Aligned_cols=40 Identities=13% Similarity=0.265 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 103 RKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQE 142 (201)
Q Consensus 103 RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~E 142 (201)
....+|.++..+.+.|..|-..+..+|..+.+.+..|+..
T Consensus 29 ~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~i 68 (230)
T PF10146_consen 29 NEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENI 68 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788888888888888887777776666655554433
No 287
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=56.68 E-value=1.8e+02 Score=32.10 Aligned_cols=47 Identities=15% Similarity=0.183 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 107 HLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDL 153 (201)
Q Consensus 107 ~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~L 153 (201)
.+.+.+.+...|..++..|..++..+++..+.+..++..+-+...+|
T Consensus 502 k~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~l 548 (1317)
T KOG0612|consen 502 KLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQL 548 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34444444445555555555555554444444444444333333333
No 288
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=56.65 E-value=1e+02 Score=27.08 Aligned_cols=64 Identities=17% Similarity=0.257 Sum_probs=36.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 89 RMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASD 152 (201)
Q Consensus 89 R~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~ 152 (201)
++..-=|.+.+.|....++.++|+.+...|+.+-+.|+.++...++.--.+...-..++...++
T Consensus 99 tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e~dpqv~~k~~~~~K~~~e 162 (203)
T KOG3433|consen 99 TLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQETDPQVFEKKVHLEKTMAE 162 (203)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence 3333445555666666666677777777777766666666666655444444433334333333
No 289
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=56.22 E-value=19 Score=35.17 Aligned_cols=42 Identities=21% Similarity=0.214 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 109 DELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEA 150 (201)
Q Consensus 109 ~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael 150 (201)
++|..+|..|.++|..|+.+++.++-+|.-+..||+-|+.--
T Consensus 46 e~l~~rv~slsq~Nkvlk~elet~k~kcki~qeenr~l~~As 87 (552)
T KOG2129|consen 46 ESLGARVSSLSQRNKVLKGELETLKGKCKIMQEENRPLLLAS 87 (552)
T ss_pred HHHHHHHHHHHhhhhhhhhhHHhhhhHHHHHHhcCchhhhhh
Confidence 567888899999999999999999999999999998776543
No 290
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=56.01 E-value=1.1e+02 Score=29.01 Aligned_cols=55 Identities=18% Similarity=0.305 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 107 HLDELWSHVVRLRT----ENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 107 ~l~eLe~qV~~L~~----EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
....|..++..+.. ....|...+..+......++.+...|..++..|..++.++.
T Consensus 68 ~~~~L~~ql~~~~~~~~~~~~~l~~~~~~~~~~l~~~e~~~~~l~~q~~~Lq~~~~~ls 126 (390)
T PRK10920 68 TNDALANQLTALQKAQESQKQELEGILKQQAKALDQANRQQAALAKQLDELQQKVATIS 126 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444443332 23345555555555566666666666677777766666665
No 291
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=56.00 E-value=1e+02 Score=24.39 Aligned_cols=45 Identities=18% Similarity=0.256 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159 116 VRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 116 ~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l 160 (201)
..|+.+-..--..+..+.++++.|.--|.+|-.++..|...|...
T Consensus 29 ~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~ 73 (102)
T PF10205_consen 29 AELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEES 73 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334333333334444555556666666666666777666666643
No 292
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=56.00 E-value=1e+02 Score=30.77 Aligned_cols=63 Identities=16% Similarity=0.230 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 99 RSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 99 RSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
.+.+|-.+.+.+.+..+...+.+-..|--++.+.+.+.+....+|++++.++..+..+++.+.
T Consensus 42 ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~i~~i~ 104 (604)
T KOG3564|consen 42 EKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQIQLIK 104 (604)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 334445556666677778888888888889999999999999999999999999998887765
No 293
>PHA02562 46 endonuclease subunit; Provisional
Probab=55.97 E-value=1.5e+02 Score=28.13 Aligned_cols=52 Identities=23% Similarity=0.254 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQML 157 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L 157 (201)
..+.+++.++..++..-..+..+...++.....+..++..+..++..|...|
T Consensus 337 ~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l 388 (562)
T PHA02562 337 KKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDEL 388 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHH
Confidence 3333333333333333333333333333334444444333333333333333
No 294
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=55.95 E-value=84 Score=29.66 Aligned_cols=56 Identities=20% Similarity=0.337 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159 105 QRHLDELWSHVVRLRTE------NHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 105 q~~l~eLe~qV~~L~~E------N~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l 160 (201)
+..+++|+..+..+... .......+..+.+....+..+-..|++++.+|...|..+
T Consensus 347 ~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 347 KEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44455555555555441 234455666777777788888888888888888888887
No 295
>PRK14127 cell division protein GpsB; Provisional
Probab=55.77 E-value=40 Score=26.72 Aligned_cols=30 Identities=23% Similarity=0.366 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 132 VSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 132 L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
+..++..|..||..|++++.+++.++....
T Consensus 42 l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~ 71 (109)
T PRK14127 42 FQKEIEELQQENARLKAQVDELTKQVSVGA 71 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 333444555677777777777777776543
No 296
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=55.66 E-value=93 Score=30.74 Aligned_cols=57 Identities=16% Similarity=0.186 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 105 QRHLDELWSHVVRLRTENHNLIDKLNHV-------SESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 105 q~~l~eLe~qV~~L~~EN~~L~~el~~L-------~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
++.++.||.+++.|+.+-.+|..++..- ..+...+..|=..+++++.++-.++..+.
T Consensus 562 ~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~ 625 (638)
T PRK10636 562 RKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQ 625 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678888888888887777776532 11355556666677777777777776665
No 297
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=55.49 E-value=2.6e+02 Score=30.82 Aligned_cols=61 Identities=16% Similarity=0.248 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 95 ESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQ 155 (201)
Q Consensus 95 ESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~ 155 (201)
++.+.+-.+++..+..++..+..+..|-.+...++..+......+...=..+++++.+++.
T Consensus 531 ~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks 591 (1293)
T KOG0996|consen 531 LASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKS 591 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556666666666666666666555555555555444444444455555555554
No 298
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=55.37 E-value=1.2e+02 Score=24.93 Aligned_cols=57 Identities=21% Similarity=0.245 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043159 106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQL 162 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~~ 162 (201)
.-+.....++..+..++..+..++.........+..+=..++.+...++.....+..
T Consensus 77 ~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~ 133 (177)
T PF13870_consen 77 QILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQ 133 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444456666666777777777777777777777777777777777777777663
No 299
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=55.28 E-value=74 Score=26.22 Aligned_cols=37 Identities=16% Similarity=0.298 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 043159 101 RMRKQRHLDELWSHVVRLRT---ENHNLIDKLNHVSESHD 137 (201)
Q Consensus 101 R~RKq~~l~eLe~qV~~L~~---EN~~L~~el~~L~~~~~ 137 (201)
+.-.+.+|.+...++..|+. .|..|..++..|+..+.
T Consensus 29 ~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 29 RDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 33344555566666666665 55556555555554443
No 300
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=55.15 E-value=57 Score=30.19 Aligned_cols=45 Identities=27% Similarity=0.290 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 110 ELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 110 eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
.|...+..++.++++|+.++.. +..+...++.++.+++..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 49 (389)
T PRK03992 5 ALEERNSELEEQIRQLELKLRD-------LEAENEKLERELERLKSELEKLK 49 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444444444444443 33344444455555555555444
No 301
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=54.98 E-value=1e+02 Score=33.07 Aligned_cols=52 Identities=25% Similarity=0.299 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 108 LDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTE 159 (201)
Q Consensus 108 l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~ 159 (201)
..+...++++|..+-+.+..++..+.+.+......+..|+.++..+...|..
T Consensus 443 ~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~ 494 (1041)
T KOG0243|consen 443 KKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQN 494 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455556666666666666666666665555666666665555554443
No 302
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=54.73 E-value=68 Score=31.52 Aligned_cols=56 Identities=21% Similarity=0.238 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H-HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 106 RHLDELWSHVVRLRTENHNLIDKLNHVS-----E-SHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~-----~-~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
+.++.||.+++.|+.+-..|..++..-. . +...+..|=..++.++.++-.++..+.
T Consensus 568 ~~~~~~e~~i~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 629 (635)
T PRK11147 568 RELEQLPQLLEDLEAEIEALQAQVADADFFSQPHEQTQKVLADLADAEQELEVAFERWEELE 629 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3388999999999999988888875421 1 566777777788888888888887765
No 303
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=54.51 E-value=85 Score=27.47 Aligned_cols=78 Identities=21% Similarity=0.240 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHH------
Q 043159 83 DERKQRRMISNRESARRSRMRKQR----HLDELWSHVVRLRTENHNLIDKLNHVSESHDRV----------LQE------ 142 (201)
Q Consensus 83 deRR~RR~lsNRESARRSR~RKq~----~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l----------~~E------ 142 (201)
--||.||-.+.+.++=.-+-+=.+ ++...-.++..|+..|+.|..++..|+.-|--| ..|
T Consensus 21 l~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLDddRqKgrklarEWQrFGr 100 (195)
T PF10226_consen 21 LVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRKLAREWQRFGR 100 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhHHHhHHHhHHHHHhhh
Confidence 347788888888777544443322 333344556667777777777766665433222 222
Q ss_pred --HHHHHHHHHHHHHHHHHh
Q 043159 143 --NARLREEASDLRQMLTEL 160 (201)
Q Consensus 143 --N~~Lrael~~Lr~~L~~l 160 (201)
-..++.++....++|..+
T Consensus 101 yta~vmr~eV~~Y~~KL~eL 120 (195)
T PF10226_consen 101 YTASVMRQEVAQYQQKLKEL 120 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 245666777777777766
No 304
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=54.38 E-value=1.4e+02 Score=32.15 Aligned_cols=58 Identities=9% Similarity=0.140 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 104 KQRHLDELWSHVVRLRTENH-----NLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 104 Kq~~l~eLe~qV~~L~~EN~-----~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
.+..+.+++.++..|..++. .+..+...+..++..+..++..|..++..|...|..++
T Consensus 1026 ~~~~l~el~~eI~~l~~~~~~~~~~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~ 1088 (1311)
T TIGR00606 1026 RENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFK 1088 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555544 34445555555555555555555555555555555554
No 305
>PF12001 DUF3496: Domain of unknown function (DUF3496); InterPro: IPR021885 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 110 amino acids in length.
Probab=54.31 E-value=1.1e+02 Score=24.40 Aligned_cols=76 Identities=16% Similarity=0.224 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------cCCCCCCCCccCCCC
Q 043159 107 HLDELWSHVVRLR-TENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ---------LSSPYTNASLRDLGE 176 (201)
Q Consensus 107 ~l~eLe~qV~~L~-~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~---------~~~~~~~~~~~~~~~ 176 (201)
.+.+||.++...+ .+...=..+++.-++.+..-..-+..|-.++..-..+|.+.. ..+...+-+.+.+-+
T Consensus 8 rIkdLeselsk~Ktsq~d~~~~eLEkYkqly~eElk~r~SLs~kL~ktnerLaevstkLl~Ekeq~rs~lstlttrPvlE 87 (111)
T PF12001_consen 8 RIKDLESELSKMKTSQEDSNKTELEKYKQLYLEELKLRKSLSNKLNKTNERLAEVSTKLLVEKEQNRSLLSTLTTRPVLE 87 (111)
T ss_pred HHHHHHHHHHHhHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccccccccCCCCCCC
Confidence 3667777777766 333333555665555554443334444444433333333332 224443444566777
Q ss_pred CCCCCC
Q 043159 177 VPCNTA 182 (201)
Q Consensus 177 ~p~~~~ 182 (201)
.||.+.
T Consensus 88 ~P~vgn 93 (111)
T PF12001_consen 88 SPCVGN 93 (111)
T ss_pred CCCcCC
Confidence 788543
No 306
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=54.04 E-value=88 Score=28.05 Aligned_cols=54 Identities=17% Similarity=0.091 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 94 RESARRSRMRKQRHLD----ELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLR 147 (201)
Q Consensus 94 RESARRSR~RKq~~l~----eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lr 147 (201)
=+|+=..-+||.-+.+ .++.+++.|+.++..|..+++.++.++..-+.-|.+++
T Consensus 169 yeSsvAfGmRKALqae~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~r 226 (259)
T KOG4001|consen 169 YESSVAFGMRKALQAENEKTRATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEER 226 (259)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4677788888876654 46778899999999999999988877666555444444
No 307
>PF14645 Chibby: Chibby family
Probab=54.03 E-value=68 Score=25.45 Aligned_cols=35 Identities=20% Similarity=0.115 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 112 WSHVVRLRTENHNLIDKLNHVSESHDRVLQENARL 146 (201)
Q Consensus 112 e~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~L 146 (201)
..+..+|+.||..|+-+++.|..-+....+|-.-+
T Consensus 77 ~~~n~~L~EENN~Lklk~elLlDMLtettae~~l~ 111 (116)
T PF14645_consen 77 RKENQQLEEENNLLKLKIELLLDMLTETTAEAHLL 111 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666665554444444443333
No 308
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=53.88 E-value=1.1e+02 Score=24.22 Aligned_cols=74 Identities=19% Similarity=0.220 Sum_probs=42.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159 85 RKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 85 RR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l 160 (201)
-+..=+..|+.-|...=. ++..++++..++..+-.+-..|..+...+..+++.+ ..+-..-+-...|+..+...
T Consensus 35 ~~~~l~~~n~~lAe~nL~-~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l-~~~~s~~~l~~~L~~~~~e~ 108 (150)
T PF07200_consen 35 EREELLAENEELAEQNLS-LEPELEELRSQLQELYEELKELESEYQEKEQQQDEL-SSNYSPDALLARLQAAASEA 108 (150)
T ss_dssp HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCHHHHHHHHHHHHHHH
Confidence 344445677777765533 346677777777777777777777777776666666 44444444444444444444
No 309
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=53.67 E-value=82 Score=31.58 Aligned_cols=46 Identities=22% Similarity=0.289 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 105 QRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEA 150 (201)
Q Consensus 105 q~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael 150 (201)
++.+..+..+..++..||..|..+|..++++...+..|+..|.+-+
T Consensus 218 ~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~L 263 (596)
T KOG4360|consen 218 QEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHL 263 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3445556666677777778888888877777777777776655544
No 310
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=53.65 E-value=45 Score=24.65 Aligned_cols=26 Identities=27% Similarity=0.348 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 108 LDELWSHVVRLRTENHNLIDKLNHVS 133 (201)
Q Consensus 108 l~eLe~qV~~L~~EN~~L~~el~~L~ 133 (201)
++.++.+...|+.||..|+-+...+.
T Consensus 44 l~~l~~~~~~l~~e~~~L~lE~~~l~ 69 (97)
T PF04999_consen 44 LQQLEKEIDQLQEENERLRLEIATLS 69 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56666666666666666666555443
No 311
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=53.58 E-value=1.1e+02 Score=30.73 Aligned_cols=23 Identities=26% Similarity=0.254 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcC
Q 043159 141 QENARLREEASDLRQMLTELQLS 163 (201)
Q Consensus 141 ~EN~~Lrael~~Lr~~L~~l~~~ 163 (201)
.+=..|+++..+|+.+|..+..+
T Consensus 566 ~~l~~L~~En~~L~~~l~~le~~ 588 (722)
T PF05557_consen 566 STLEALQAENEDLLARLRSLEEG 588 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHhcccC
Confidence 44567777888888888777643
No 312
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=53.55 E-value=1.5e+02 Score=27.48 Aligned_cols=78 Identities=18% Similarity=0.301 Sum_probs=41.6
Q ss_pred chHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHH
Q 043159 81 IIDERKQRR-MISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSES--------------HDRVLQENAR 145 (201)
Q Consensus 81 ~~deRR~RR-~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~--------------~~~l~~EN~~ 145 (201)
...||++|- -+-.-|+| -.|.++.+++-..++..|..||+.|...++.+... ...++.....
T Consensus 30 LkKE~qQrQfQleSlEAa---LqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s 106 (307)
T PF10481_consen 30 LKKERQQRQFQLESLEAA---LQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNS 106 (307)
T ss_pred HHHHHHHHHHhHHHHHHH---HHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHH
Confidence 344455544 23333433 23334444555566677777777777666655432 3334555555
Q ss_pred HHHHHHHHHHHHHHhh
Q 043159 146 LREEASDLRQMLTELQ 161 (201)
Q Consensus 146 Lrael~~Lr~~L~~l~ 161 (201)
.+.++..|.+.|..+.
T Consensus 107 ~Kkqie~Leqelkr~K 122 (307)
T PF10481_consen 107 CKKQIEKLEQELKRCK 122 (307)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5666666666555544
No 313
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=53.44 E-value=1.2e+02 Score=24.45 Aligned_cols=38 Identities=11% Similarity=0.117 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 120 TENHNLIDKLNHVSESHDRVLQENARLREEASDLRQML 157 (201)
Q Consensus 120 ~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L 157 (201)
.|-++|+.+|..|.-+....+.=|..|..++.-|...|
T Consensus 25 iERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aL 62 (134)
T PF08232_consen 25 IERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYAL 62 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445554444444444444444444444444333
No 314
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=52.87 E-value=1.1e+02 Score=28.30 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 043159 137 DRVLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 137 ~~l~~EN~~Lrael~~Lr~~L~~l 160 (201)
..+..+...+..++.++++++..+
T Consensus 96 ~~l~~~l~~~~~~l~~l~~~~~~l 119 (372)
T PF04375_consen 96 QQLQQELAQLQQQLAELQQQLAAL 119 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443
No 315
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=52.75 E-value=70 Score=32.15 Aligned_cols=46 Identities=15% Similarity=0.250 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 105 QRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEA 150 (201)
Q Consensus 105 q~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael 150 (201)
+.++.+++.+-..+...-..|..++.....++..+..+|..|+..+
T Consensus 279 ~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~I 324 (581)
T KOG0995|consen 279 QAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQI 324 (581)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666555555555555555555555555555555555555443
No 316
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.60 E-value=1.8e+02 Score=30.88 Aligned_cols=62 Identities=15% Similarity=0.207 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 97 ARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLT 158 (201)
Q Consensus 97 ARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~ 158 (201)
-.+-..+-+..+.+|..+++.|+..+.+|..+.+.+.+++.....+-..|+.++..|+.+|.
T Consensus 655 l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 655 LDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444555555555555555555555555555555555555555555555555555554
No 317
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=52.48 E-value=94 Score=28.36 Aligned_cols=64 Identities=27% Similarity=0.338 Sum_probs=31.9
Q ss_pred HHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 85 RKQRRMISNRESA-RRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDL 153 (201)
Q Consensus 85 RR~RR~lsNRESA-RRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~L 153 (201)
|-.-.-|+|||.. +.+|.||+.-.+++ ..|+...- -..++..|.+++..+++||....+++..+
T Consensus 127 R~~LK~IR~~E~sl~p~R~~r~~l~d~I----~kLk~k~P-~s~kl~~LeqELvraEae~lvaEAqL~n~ 191 (271)
T PF13805_consen 127 RIHLKSIRNREESLQPSRDRRRKLQDEI----AKLKYKDP-QSPKLVVLEQELVRAEAENLVAEAQLSNI 191 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH-T-TTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHhHHHHHHH----HHHHhcCC-CChHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 4444667788765 44455544332222 22322111 12345556666666666666666555443
No 318
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=52.38 E-value=1.5e+02 Score=25.18 Aligned_cols=59 Identities=17% Similarity=0.246 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q 043159 102 MRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDR-VLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 102 ~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~-l~~EN~~Lrael~~Lr~~L~~l 160 (201)
..-...+.+|+.+...|+.+-..|..+++.+.+.... ...++.....++..|++.-..+
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql 182 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQL 182 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677788888888888888888887777766544 3445666666666665544433
No 319
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=52.29 E-value=58 Score=24.90 Aligned_cols=41 Identities=32% Similarity=0.359 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 114 HVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQM 156 (201)
Q Consensus 114 qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~ 156 (201)
+|...-.||..|+.++..++.=+ ...|-..|-++++.|+..
T Consensus 45 evtr~A~EN~rL~ee~rrl~~f~--~~gerE~l~~eis~L~~~ 85 (86)
T PF12711_consen 45 EVTRFAMENIRLREELRRLQSFY--VEGEREMLLQEISELRDQ 85 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHhh
Confidence 44566678888888888776644 666777888888888765
No 320
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=51.90 E-value=82 Score=30.83 Aligned_cols=56 Identities=21% Similarity=0.258 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
+|++-|...+.+....-..+......+.++...+..|=..|.-++..|.++-..|+
T Consensus 432 rYvdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq 487 (507)
T PF05600_consen 432 RYVDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQ 487 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555555555555555555555555555544444
No 321
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=51.66 E-value=57 Score=30.21 Aligned_cols=43 Identities=16% Similarity=0.225 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLRE 148 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lra 148 (201)
+++.+|+.++..|+..+..|..++..+..+...+..++..|+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (389)
T PRK03992 8 ERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLKS 50 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3445677888899999999998888888877777777776665
No 322
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=51.64 E-value=1.7e+02 Score=25.76 Aligned_cols=73 Identities=18% Similarity=0.223 Sum_probs=41.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 89 RMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 89 R~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
++.+-|..|..-..|=..........-..|..+...+..++..|.........|...|+.++..-+..+....
T Consensus 51 ~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak 123 (246)
T PF00769_consen 51 ELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAK 123 (246)
T ss_dssp HHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444555666667788888888888888888888888888888888877777665544
No 323
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=51.60 E-value=85 Score=31.35 Aligned_cols=61 Identities=23% Similarity=0.261 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhcCCC
Q 043159 105 QRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENAR----LREEASDLRQMLTELQLSSP 165 (201)
Q Consensus 105 q~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~----Lrael~~Lr~~L~~l~~~~~ 165 (201)
++++++++.-+.+|..++..+..++..+...|.....+|.. -+.+...|...|.++++.+.
T Consensus 486 ee~i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~~e~e~~a~~~E~eklE~el~~lnL~s~ 550 (622)
T COG5185 486 EEDIKNLKHDINELTQILEKLELELSEANSKFELSKEENERELVAQRIEIEKLEKELNDLNLLSK 550 (622)
T ss_pred HHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 57888899999999999999999999888888777666544 46788899999999997554
No 324
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=51.36 E-value=1.6e+02 Score=28.58 Aligned_cols=67 Identities=18% Similarity=0.251 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 82 IDERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEAS 151 (201)
Q Consensus 82 ~deRR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~ 151 (201)
.-|+|.|..++.-|.-|. ++.++..+=..-+..|+.|..+|..+++.-.++....+.+...|..++.
T Consensus 111 AaE~khrKli~dLE~dRe---~haqdaaeGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLe 177 (561)
T KOG1103|consen 111 AAEKKHRKLIKDLEADRE---AHAQDAAEGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLE 177 (561)
T ss_pred HHHHHHHHHHHHHHHHHH---HHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666555433 3333333333345677777777777777666555555555555555443
No 325
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=51.33 E-value=1.4e+02 Score=27.95 Aligned_cols=19 Identities=21% Similarity=0.392 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 043159 144 ARLREEASDLRQMLTELQL 162 (201)
Q Consensus 144 ~~Lrael~~Lr~~L~~l~~ 162 (201)
..|+.++.+.+..+.+|..
T Consensus 71 ~~L~~~Ik~r~~~l~DmEa 89 (330)
T PF07851_consen 71 EKLEEDIKERRCQLFDMEA 89 (330)
T ss_pred HHHHHHHHHHHhhHHHHHh
Confidence 4455555566666666663
No 326
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=50.97 E-value=61 Score=28.39 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 043159 111 LWSHVVRLRTENHNLIDKLNH 131 (201)
Q Consensus 111 Le~qV~~L~~EN~~L~~el~~ 131 (201)
|..+|..|..+...|+..+..
T Consensus 85 Lrekl~~le~El~~Lr~~l~~ 105 (202)
T PF06818_consen 85 LREKLGQLEAELAELREELAC 105 (202)
T ss_pred hhhhhhhhHHHHHHHHHHHHh
Confidence 333444444444444444433
No 327
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=50.90 E-value=94 Score=30.60 Aligned_cols=44 Identities=23% Similarity=0.280 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 118 LRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 118 L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
++..-.+|..++..+..+...+..+|..|++....++.+|..++
T Consensus 380 ~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~ 423 (493)
T KOG0804|consen 380 VERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELE 423 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33334445555556666666666777777777776666666665
No 328
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=50.86 E-value=1.3e+02 Score=24.88 Aligned_cols=58 Identities=22% Similarity=0.219 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 043159 106 RHLDELWSHVVRLRTENHNLIDKLNHVSE--------SHDRVLQENARLREEASDLRQMLTELQLS 163 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~--------~~~~l~~EN~~Lrael~~Lr~~L~~l~~~ 163 (201)
+-++.|+.+++.|+.+..++..++..... .++....+-..|..++..|..+|....+.
T Consensus 11 eg~~~L~~EL~~L~~~r~~i~~~i~~Ar~~GDlsENaey~aak~~q~~~e~RI~~L~~~L~~A~ii 76 (158)
T PRK05892 11 AARDHLEAELARLRARRDRLAVEVNDRGMIGDHGDQAEAIQRADELARLDDRINELDRRLRTGPTP 76 (158)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhCEEe
Confidence 34567778888887766666666643332 25566666777888999999999987753
No 329
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=50.84 E-value=20 Score=24.01 Aligned_cols=40 Identities=33% Similarity=0.337 Sum_probs=7.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 88 RRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDK 128 (201)
Q Consensus 88 RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~e 128 (201)
++...|++=|+..-... ..+.+|+.++..|..||-.|+.+
T Consensus 4 k~~~qn~~laK~Ns~l~-~ki~~le~~~s~L~~en~~lR~~ 43 (46)
T PF07558_consen 4 KYSRQNRELAKRNSALS-IKIQELENEVSKLLNENVNLREL 43 (46)
T ss_dssp ---------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhHHHH-hHHHHHHhHHHHHHHHHHHHHHH
Confidence 34444555444433322 23555555555555555555544
No 330
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=50.71 E-value=84 Score=29.55 Aligned_cols=38 Identities=16% Similarity=0.217 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 111 LWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQ 155 (201)
Q Consensus 111 Le~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~ 155 (201)
|+.++..|+.++..|..++. .+..|-..|++++..|+.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 64 (398)
T PTZ00454 27 LEKELEFLDIQEEYIKEEQK-------NLKRELIRAKEEVKRIQS 64 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhC
Confidence 34444444444444444444 444455556666666543
No 331
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=50.70 E-value=1.7e+02 Score=25.53 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 138 RVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 138 ~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
.+..|=..|..+..+.+.+|..++
T Consensus 151 q~r~ea~aL~~e~~aaqaQL~~lQ 174 (192)
T PF11180_consen 151 QARQEAQALEAERRAAQAQLRQLQ 174 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444445555444
No 332
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=50.69 E-value=2.7e+02 Score=32.02 Aligned_cols=78 Identities=26% Similarity=0.284 Sum_probs=48.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 84 ERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 84 eRR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
++++++-.+==...++...+=...++..+.....+..+...|...+..+......+..+|..|..++.+|...+.+.+
T Consensus 1434 e~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~ 1511 (1930)
T KOG0161|consen 1434 EKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGG 1511 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444333333334444444455555556666666677777777777777777777778777777777777666655
No 333
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=50.61 E-value=5.9 Score=33.18 Aligned_cols=51 Identities=29% Similarity=0.308 Sum_probs=1.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 111 LWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 111 Le~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
|..+|..|..||..|+.++.........-..+...|-.++..|+-.+..+.
T Consensus 27 l~~qv~rL~qEN~~Lr~el~~tq~~lq~se~~~~~Lpee~~~Lqfl~~~~r 77 (181)
T PF09311_consen 27 LRAQVRRLCQENDWLRGELANTQQKLQESEQEVAQLPEEVKHLQFLVSIKR 77 (181)
T ss_dssp HHT------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCcchHHHHHHHHHhcc
Confidence 344667777777777777776666665556677777777777766655554
No 334
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=50.44 E-value=25 Score=32.90 Aligned_cols=25 Identities=24% Similarity=0.143 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 135 SHDRVLQENARLREEASDLRQMLTE 159 (201)
Q Consensus 135 ~~~~l~~EN~~Lrael~~Lr~~L~~ 159 (201)
.+..+..||.+||+++.+|++++..
T Consensus 58 ~y~~L~~EN~~Lk~Ena~L~~~l~~ 82 (337)
T PRK14872 58 HALVLETENFLLKERIALLEERLKS 82 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555444443
No 335
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=50.41 E-value=88 Score=30.94 Aligned_cols=17 Identities=24% Similarity=0.282 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHh
Q 043159 144 ARLREEASDLRQMLTEL 160 (201)
Q Consensus 144 ~~Lrael~~Lr~~L~~l 160 (201)
..|++++.+.+..+..+
T Consensus 272 ~~le~e~~e~~~~l~~l 288 (650)
T TIGR03185 272 KEIEAARKANRAQLREL 288 (650)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444443
No 336
>PRK11546 zraP zinc resistance protein; Provisional
Probab=50.31 E-value=1.1e+02 Score=25.38 Aligned_cols=17 Identities=29% Similarity=0.249 Sum_probs=6.6
Q ss_pred HHHHHHhHHHHHHHHHH
Q 043159 87 QRRMISNRESARRSRMR 103 (201)
Q Consensus 87 ~RR~lsNRESARRSR~R 103 (201)
.-..|-+.=-+.-...|
T Consensus 51 ~~q~I~~~f~~~t~~LR 67 (143)
T PRK11546 51 AWQKIHNDFYAQTSALR 67 (143)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444333333333
No 337
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=50.26 E-value=59 Score=31.20 Aligned_cols=58 Identities=21% Similarity=0.207 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 043159 106 RHLDELWSHVVRLRTENHNLID--KLNHVSESHDRVLQENARLREEASDLRQMLTELQLS 163 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~--el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~~~ 163 (201)
+++.+|+.++..++.....+.. .-..+..++..+..+-..|++++.-|...|.++...
T Consensus 170 ~Rl~~L~~qi~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~~~ 229 (475)
T PF10359_consen 170 ERLDELEEQIEKHEEKLGELELNPDDPELKSDIEELERHISSLKERIEFLENMLEDLEDS 229 (475)
T ss_pred HHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4466777777766665555432 233455677778888889999999999999998854
No 338
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=50.01 E-value=31 Score=24.09 Aligned_cols=26 Identities=19% Similarity=0.228 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 108 LDELWSHVVRLRTENHNLIDKLNHVS 133 (201)
Q Consensus 108 l~eLe~qV~~L~~EN~~L~~el~~L~ 133 (201)
-.+...++..|+.||..|+.+++.++
T Consensus 24 ~~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 24 RSAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35667788889999999999888654
No 339
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=49.72 E-value=41 Score=29.22 Aligned_cols=44 Identities=23% Similarity=0.335 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 118 LRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 118 L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
.+..+.+|..+.+.|+.+++.|..+|..|..++.+|+..+....
T Consensus 103 ARwK~kqlE~d~~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~~~~~ 146 (198)
T KOG0483|consen 103 ARWKTKQLEKDYESLKRQLESLRSENDRLQSEVQELVAELSSLK 146 (198)
T ss_pred ccccchhhhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhh
Confidence 34444455556666666666666677777777777766666554
No 340
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=49.55 E-value=67 Score=22.90 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 108 LDELWSHVVRLRTENHNLIDKLNH 131 (201)
Q Consensus 108 l~eLe~qV~~L~~EN~~L~~el~~ 131 (201)
++||+.++..|+.|...+...+..
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~ 46 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAK 46 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888777777766554
No 341
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=49.50 E-value=98 Score=29.26 Aligned_cols=12 Identities=33% Similarity=0.570 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 043159 144 ARLREEASDLRQ 155 (201)
Q Consensus 144 ~~Lrael~~Lr~ 155 (201)
..|++++.+|..
T Consensus 79 ~~l~~~~~~~~~ 90 (418)
T TIGR00414 79 KELKEELTELSA 90 (418)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 342
>PF15058 Speriolin_N: Speriolin N terminus
Probab=49.39 E-value=27 Score=30.61 Aligned_cols=26 Identities=19% Similarity=0.364 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 129 LNHVSESHDRVLQENARLREEASDLR 154 (201)
Q Consensus 129 l~~L~~~~~~l~~EN~~Lrael~~Lr 154 (201)
.+-+++++.+++.||.+||.++.-|+
T Consensus 7 yeGlrhqierLv~ENeeLKKlVrLir 32 (200)
T PF15058_consen 7 YEGLRHQIERLVRENEELKKLVRLIR 32 (200)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 44567788889999999999987665
No 343
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=49.26 E-value=28 Score=33.05 Aligned_cols=30 Identities=17% Similarity=0.134 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 107 HLDELWSHVVRLRTENHNLIDKLNHVSESH 136 (201)
Q Consensus 107 ~l~eLe~qV~~L~~EN~~L~~el~~L~~~~ 136 (201)
+.-.|..+-..|++||..|+.+++.|....
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~ 62 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKIEVERLENEM 62 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 455677778888888888888888875543
No 344
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=49.19 E-value=33 Score=29.74 Aligned_cols=44 Identities=23% Similarity=0.354 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 116 VRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTE 159 (201)
Q Consensus 116 ~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~ 159 (201)
.+|+.+-..|+.+++.|...+..+..|+..|++++..+....+.
T Consensus 108 kqlE~d~~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~~~~~~~~~~ 151 (198)
T KOG0483|consen 108 KQLEKDYESLKRQLESLRSENDRLQSEVQELVAELSSLKREMQK 151 (198)
T ss_pred hhhhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhcc
Confidence 55666777788888888888889999999999999988877766
No 345
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=49.16 E-value=1.9e+02 Score=25.48 Aligned_cols=22 Identities=23% Similarity=0.237 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 043159 108 LDELWSHVVRLRTENHNLIDKL 129 (201)
Q Consensus 108 l~eLe~qV~~L~~EN~~L~~el 129 (201)
+.+|+.+++...+.-..|...+
T Consensus 83 ~qeLe~~L~~~~qk~~tl~e~~ 104 (203)
T KOG3433|consen 83 LQELESQLATGSQKKATLGESI 104 (203)
T ss_pred HHHHHHHHHHhhhhHhHHHHHH
Confidence 3344444444444444443333
No 346
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.15 E-value=1.1e+02 Score=22.84 Aligned_cols=15 Identities=20% Similarity=0.202 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHH
Q 043159 109 DELWSHVVRLRTENH 123 (201)
Q Consensus 109 ~eLe~qV~~L~~EN~ 123 (201)
.+|+.++..|+..-.
T Consensus 4 ~~lE~Ri~eLE~r~A 18 (72)
T COG2900 4 MELEARIIELEIRLA 18 (72)
T ss_pred hhHHHHHHHHHHHHH
Confidence 456667776665443
No 347
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=48.95 E-value=3.3e+02 Score=29.69 Aligned_cols=49 Identities=14% Similarity=0.192 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLR 154 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr 154 (201)
...+.|.-++++|+.+-..+..++..+...+..+..|+..|++.+....
T Consensus 815 ~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~ 863 (1174)
T KOG0933|consen 815 NEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVE 863 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3445556666666666666777777777777777777766666654433
No 348
>PRK14160 heat shock protein GrpE; Provisional
Probab=48.80 E-value=1.4e+02 Score=26.13 Aligned_cols=39 Identities=26% Similarity=0.360 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 109 DELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLR 147 (201)
Q Consensus 109 ~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lr 147 (201)
..|+.++..|+.+...|..++..+..++.++.++-.-.|
T Consensus 57 ~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~R 95 (211)
T PRK14160 57 EELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYR 95 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444455555555444444444433333
No 349
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=48.62 E-value=1.5e+02 Score=32.04 Aligned_cols=47 Identities=21% Similarity=0.293 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 115 VVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 115 V~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
+..+-..|++|..++....++.+.+..+|.+.+.++..+++.+..++
T Consensus 260 i~~~~~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~ 306 (1109)
T PRK10929 260 IVAQFKINRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLR 306 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445679999999999999999999999998888887777777655
No 350
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=48.20 E-value=1.1e+02 Score=28.22 Aligned_cols=22 Identities=45% Similarity=0.576 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 043159 140 LQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 140 ~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
..+=.+||.+..+||+.|+--.
T Consensus 163 lesvqRLkdEardlrqelavr~ 184 (333)
T KOG1853|consen 163 LESVQRLKDEARDLRQELAVRT 184 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677888888888775443
No 351
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=47.99 E-value=78 Score=24.62 Aligned_cols=30 Identities=17% Similarity=0.313 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 132 VSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 132 L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
.+.....+...|..|..++.+.+..|..++
T Consensus 42 ar~e~~~~e~k~~~le~~l~e~~~~l~~lq 71 (100)
T PF06428_consen 42 ARRERAALEEKNEQLEKQLKEKEALLESLQ 71 (100)
T ss_dssp HHHHHHHHHHHHHHHHHCTTHHCHCCCHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666677777777766666665555
No 352
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=47.76 E-value=1.1e+02 Score=30.05 Aligned_cols=18 Identities=39% Similarity=0.368 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 043159 114 HVVRLRTENHNLIDKLNH 131 (201)
Q Consensus 114 qV~~L~~EN~~L~~el~~ 131 (201)
+-...+.||.+|.+++..
T Consensus 286 Ee~~~reen~rlQrkL~~ 303 (552)
T KOG2129|consen 286 EEVDHREENERLQRKLIN 303 (552)
T ss_pred HHhhHHHHHHHHHHHHHH
Confidence 333445555555554443
No 353
>PF14645 Chibby: Chibby family
Probab=47.54 E-value=55 Score=25.98 Aligned_cols=14 Identities=43% Similarity=0.560 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 043159 114 HVVRLRTENHNLID 127 (201)
Q Consensus 114 qV~~L~~EN~~L~~ 127 (201)
....++.+|++|..
T Consensus 72 ~~~~l~~~n~~L~E 85 (116)
T PF14645_consen 72 ENQRLRKENQQLEE 85 (116)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444333
No 354
>smart00340 HALZ homeobox associated leucin zipper.
Probab=46.80 E-value=53 Score=22.33 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 108 LDELWSHVVRLRTENHNLIDKLNHVS 133 (201)
Q Consensus 108 l~eLe~qV~~L~~EN~~L~~el~~L~ 133 (201)
.+-|..=.+.|..||..|+.++..|+
T Consensus 7 Ce~LKrcce~LteeNrRL~ke~~eLr 32 (44)
T smart00340 7 CELLKRCCESLTEENRRLQKEVQELR 32 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667888888888888887665
No 355
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=46.78 E-value=1.4e+02 Score=23.40 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 120 TENHNLIDKLNHVSESHDRVLQEN 143 (201)
Q Consensus 120 ~EN~~L~~el~~L~~~~~~l~~EN 143 (201)
.|...|..++..+.++......+.
T Consensus 80 ~ei~~l~~~l~~l~~~~~~~~~~~ 103 (108)
T PF06210_consen 80 QEIERLHRKLDALREKLGELLERD 103 (108)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHH
Confidence 345555666665555554444443
No 356
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=46.68 E-value=2.9e+02 Score=27.09 Aligned_cols=40 Identities=15% Similarity=0.227 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 108 LDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLR 147 (201)
Q Consensus 108 l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lr 147 (201)
+..+..+...|+.+...|..+-..|..+.++|.++-..|.
T Consensus 139 lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ 178 (499)
T COG4372 139 LARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ 178 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333444333333
No 357
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=46.50 E-value=44 Score=21.30 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 111 LWSHVVRLRTENHNLIDKLNHVSE 134 (201)
Q Consensus 111 Le~qV~~L~~EN~~L~~el~~L~~ 134 (201)
|-.+.++|+...++|+.+++.|+.
T Consensus 6 L~sekeqLrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 6 LISEKEQLRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445556666666666666665544
No 358
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=46.36 E-value=1.6e+02 Score=27.33 Aligned_cols=46 Identities=22% Similarity=0.257 Sum_probs=30.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 91 ISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRV 139 (201)
Q Consensus 91 lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l 139 (201)
+=|.|+-+.+ -+-..+.|..||..|+..|..+++++...+..+..|
T Consensus 66 ~y~~e~e~~s---y~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~egl 111 (389)
T PF06216_consen 66 IYNKEFERQS---YSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGL 111 (389)
T ss_pred HHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3355555444 345667777788888888888877777776666555
No 359
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=46.34 E-value=1.8e+02 Score=24.60 Aligned_cols=8 Identities=25% Similarity=0.081 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 043159 143 NARLREEA 150 (201)
Q Consensus 143 N~~Lrael 150 (201)
...+++.+
T Consensus 144 ~~~~~~~a 151 (188)
T PF03962_consen 144 IKIAKEAA 151 (188)
T ss_pred HHHHHHHH
Confidence 33333333
No 360
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=46.30 E-value=3e+02 Score=27.07 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043159 111 LWSHVVRLRTENHNLIDKLNHVS 133 (201)
Q Consensus 111 Le~qV~~L~~EN~~L~~el~~L~ 133 (201)
++.++..++.++..+..++..+.
T Consensus 65 ~~~~l~~~~~~~~~~~~~~~~l~ 87 (475)
T PRK10361 65 LNNEVRSLQSINTSLEADLREVT 87 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444433333
No 361
>PRK04863 mukB cell division protein MukB; Provisional
Probab=46.23 E-value=3.3e+02 Score=30.42 Aligned_cols=10 Identities=50% Similarity=0.939 Sum_probs=5.8
Q ss_pred cccccCCCCC
Q 043159 9 IQYYLAPENA 18 (201)
Q Consensus 9 ~~~~l~p~~~ 18 (201)
|..||.|.++
T Consensus 217 l~~yll~e~~ 226 (1486)
T PRK04863 217 LRDYLLPENS 226 (1486)
T ss_pred HHHHcCCCCh
Confidence 4456666653
No 362
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=46.20 E-value=2.2e+02 Score=28.15 Aligned_cols=27 Identities=22% Similarity=0.388 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 135 SHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 135 ~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
..+.++.||.+||..++.|+.....+.
T Consensus 305 r~qqleeentelRs~~arlksl~dkla 331 (502)
T KOG0982|consen 305 RDQQLEEENTELRSLIARLKSLADKLA 331 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667778888887777766655554
No 363
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=45.95 E-value=1.4e+02 Score=24.49 Aligned_cols=40 Identities=30% Similarity=0.444 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 115 VVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLR 154 (201)
Q Consensus 115 V~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr 154 (201)
...++.+.......+..+...+..+..+-..++....+|+
T Consensus 93 ~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~ 132 (177)
T PF13870_consen 93 LERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLR 132 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333
No 364
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=45.66 E-value=50 Score=26.48 Aligned_cols=40 Identities=20% Similarity=0.239 Sum_probs=26.9
Q ss_pred chHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 81 IIDERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLI 126 (201)
Q Consensus 81 ~~deRR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~ 126 (201)
.-|-.|..|+.++||.+. ++.+++|+.++..|+.+.+.+.
T Consensus 93 ~~E~~Rs~~ke~~Ke~~~------~~~l~~L~~~i~~L~~~~~~~~ 132 (134)
T PF07047_consen 93 IYEYWRSARKEAKKEEEL------QERLEELEERIEELEEQVEKQQ 132 (134)
T ss_pred HHHHHHHHhhHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 446677777777666643 4567777788877777666543
No 365
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=45.52 E-value=1.5e+02 Score=29.75 Aligned_cols=56 Identities=16% Similarity=0.210 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 104 KQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTE 159 (201)
Q Consensus 104 Kq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~ 159 (201)
++.-...+..++..+...-..+..++.....++.....||..|-.++.++..++..
T Consensus 196 eq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~ 251 (596)
T KOG4360|consen 196 EQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKY 251 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 33333344444444444444444444444455555555555555555555554443
No 366
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=45.48 E-value=2.6e+02 Score=26.07 Aligned_cols=26 Identities=35% Similarity=0.547 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 94 RESARRSRMRKQRHLDELWSHVVRLRT 120 (201)
Q Consensus 94 RESARRSR~RKq~~l~eLe~qV~~L~~ 120 (201)
+|+-+|-.. +...+++|..|+.+++.
T Consensus 78 kes~~~l~d-RetEI~eLksQL~RMrE 103 (305)
T PF15290_consen 78 KESENRLHD-RETEIDELKSQLARMRE 103 (305)
T ss_pred HHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence 355555444 34456667666654443
No 367
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=45.45 E-value=3e+02 Score=26.98 Aligned_cols=39 Identities=18% Similarity=0.370 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 116 VRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLR 154 (201)
Q Consensus 116 ~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr 154 (201)
..+..+-+.|..++..|.++...+.++-..|-++-..|.
T Consensus 140 ar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ 178 (499)
T COG4372 140 ARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ 178 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444
No 368
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=45.25 E-value=85 Score=24.01 Aligned_cols=35 Identities=14% Similarity=0.252 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 127 DKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 127 ~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
-++..+++++..|..||..|+.+...-...+...+
T Consensus 23 ~k~~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn~~ 57 (87)
T PF10883_consen 23 WKVKKAKKQNAKLQKENEQLKTEKAVAETQVKNAK 57 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566667777777777766666666655
No 369
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=44.62 E-value=2.1e+02 Score=24.72 Aligned_cols=63 Identities=14% Similarity=0.185 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 99 RSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 99 RSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
.+-.+--...+.++.++..|.......-.+...+...+..|..++..|..++...+.+...++
T Consensus 162 ~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~ 224 (237)
T PF00261_consen 162 ASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQ 224 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444566666677777766666666666677777777777777777766666555544
No 370
>PLN02320 seryl-tRNA synthetase
Probab=44.50 E-value=2.8e+02 Score=27.42 Aligned_cols=55 Identities=24% Similarity=0.341 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHh
Q 043159 106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHD---------RVLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~---------~l~~EN~~Lrael~~Lr~~L~~l 160 (201)
..+.+|..+...+..+-+.|+.+.+.+.+++. .+..|=..|++++.+|...+..+
T Consensus 93 d~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~ 156 (502)
T PLN02320 93 ELVLELYENMLALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKL 156 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555556555555554432 33444455555555555544443
No 371
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=44.26 E-value=2.1e+02 Score=24.69 Aligned_cols=15 Identities=33% Similarity=0.483 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 043159 145 RLREEASDLRQMLTE 159 (201)
Q Consensus 145 ~Lrael~~Lr~~L~~ 159 (201)
.+..++..|..+|..
T Consensus 173 ~~e~~i~~L~~~lke 187 (237)
T PF00261_consen 173 EYEEKIRDLEEKLKE 187 (237)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444433
No 372
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=44.20 E-value=1.4e+02 Score=22.53 Aligned_cols=53 Identities=15% Similarity=0.144 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 108 LDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 108 l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
-.+|..++..-+.|...|..-++.|+.++.....-|..|..+...++.. ....
T Consensus 7 Nk~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~~~-~~~~ 59 (76)
T PF11544_consen 7 NKELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQRS-NDLN 59 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccch
Confidence 3456666666666666666666777777777777788888888777775 4444
No 373
>PRK10722 hypothetical protein; Provisional
Probab=44.11 E-value=88 Score=28.30 Aligned_cols=28 Identities=21% Similarity=0.224 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 134 ESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 134 ~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
.+++.+..++..|..++....++|..|.
T Consensus 176 ~qlD~lrqq~~~Lq~~L~~t~rKLEnLT 203 (247)
T PRK10722 176 SELDALRQQQQRLQYQLELTTRKLENLT 203 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666666666666666554
No 374
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=44.00 E-value=1.9e+02 Score=24.18 Aligned_cols=47 Identities=15% Similarity=0.097 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 82 IDERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDK 128 (201)
Q Consensus 82 ~deRR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~e 128 (201)
.-+.|+.++..+-+.|.+.+..=.+...+.+.++..-+.+-+.++.+
T Consensus 38 iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e 84 (155)
T PRK06569 38 IFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKE 84 (155)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677778888888777776666666667776666666666555
No 375
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=43.91 E-value=2.2e+02 Score=26.45 Aligned_cols=34 Identities=24% Similarity=0.268 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 125 LIDKLNHVSESHDRVLQENARLREEASDLRQMLT 158 (201)
Q Consensus 125 L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~ 158 (201)
|..++...+..+..|..|..+|+.++...+....
T Consensus 100 lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~ 133 (307)
T PF10481_consen 100 LEGQLNSCKKQIEKLEQELKRCKSELERSQQAAS 133 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344455555666778888888888887665544
No 376
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=43.79 E-value=1.9e+02 Score=24.18 Aligned_cols=72 Identities=25% Similarity=0.350 Sum_probs=45.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH----------------------HHHHH
Q 043159 90 MISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLID-------KLNHVSES----------------------HDRVL 140 (201)
Q Consensus 90 ~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~-------el~~L~~~----------------------~~~l~ 140 (201)
+..=.|+||....+-++.|+++..+|...-.+...|.. ++..+.+. +.-+.
T Consensus 18 If~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~r 97 (159)
T PF05384_consen 18 IFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLR 97 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34446888888888888888888776655555555444 33333222 22334
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 043159 141 QENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 141 ~EN~~Lrael~~Lr~~L~~l~ 161 (201)
.+-..|+.+-.+|..+|..|.
T Consensus 98 e~E~qLr~rRD~LErrl~~l~ 118 (159)
T PF05384_consen 98 EREKQLRERRDELERRLRNLE 118 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445677777777777777776
No 377
>PF14282 FlxA: FlxA-like protein
Probab=43.78 E-value=1.4e+02 Score=22.93 Aligned_cols=50 Identities=20% Similarity=0.316 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 112 WSHVVRLRTENHNLIDKLNHVSE----SHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 112 e~qV~~L~~EN~~L~~el~~L~~----~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
..++..|......|..+|..|.. --......=..|.+++..|.+.|..++
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq 71 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQ 71 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
No 378
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=43.75 E-value=55 Score=26.49 Aligned_cols=41 Identities=22% Similarity=0.254 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 82 IDERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVS 133 (201)
Q Consensus 82 ~deRR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~ 133 (201)
+|-=|---|-.=|| .++.|..++..|...|..|.+++..|+
T Consensus 54 MDLVKtHLmfAVRE-----------EVe~Lk~qI~eL~er~~~Le~EN~lLk 94 (123)
T KOG4797|consen 54 MDLVKTHLMFAVRE-----------EVEVLKEQIRELEERNSALERENSLLK 94 (123)
T ss_pred HHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555443 455555555555555555555555443
No 379
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=43.54 E-value=1.7e+02 Score=26.46 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 043159 140 LQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 140 ~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
...-..|+.++.+++.+|..+.
T Consensus 213 ~~~i~~L~~~l~~~~~~l~~l~ 234 (362)
T TIGR01010 213 LSLISTLEGELIRVQAQLAQLR 234 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334566667777777776665
No 380
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=43.49 E-value=1.2e+02 Score=24.72 Aligned_cols=36 Identities=22% Similarity=0.205 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQ 141 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~ 141 (201)
+-+.....-+..|+.||.-|+..+-.+++-++.=..
T Consensus 78 Kvl~aKdETI~~lk~EN~fLKeAl~s~QE~y~ed~k 113 (126)
T PF13118_consen 78 KVLDAKDETIEALKNENRFLKEALYSMQELYEEDRK 113 (126)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 345555666778888888888877777665544433
No 381
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=43.47 E-value=1.9e+02 Score=25.83 Aligned_cols=50 Identities=14% Similarity=0.221 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 100 SRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASD 152 (201)
Q Consensus 100 SR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~ 152 (201)
.|.-+|..++.+..-+...+.+..++..++..+..+.+.. |..+|+++..
T Consensus 157 ~R~~~Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~kve~a---~~~~k~e~~R 206 (243)
T cd07666 157 RRDQIQAELDSKVEALANKKADRDLLKEEIEKLEDKVECA---NNALKADWER 206 (243)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 3345556666666555555665566666666655544443 6667777654
No 382
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.43 E-value=1.1e+02 Score=27.32 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 043159 108 LDELWSHVVRLR---TENHNLIDKLNHVSESH 136 (201)
Q Consensus 108 l~eLe~qV~~L~---~EN~~L~~el~~L~~~~ 136 (201)
+.+||.++..|. .+|..|..++-.+...+
T Consensus 54 ~~~Le~~l~~L~~~A~~N~~lf~r~~~lq~~L 85 (218)
T COG3159 54 IRELEEELAALMENARANERLFYRLHALQLDL 85 (218)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 344444444433 45666666655555443
No 383
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=43.28 E-value=2.9e+02 Score=26.07 Aligned_cols=27 Identities=26% Similarity=0.495 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 135 SHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 135 ~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
.+..+...-..|.+++.+|..++..++
T Consensus 376 ~~~~l~~~~~~l~~~~~~l~~~~~~l~ 402 (451)
T PF03961_consen 376 QLKKLKEKKKELKEELKELKEELKELK 402 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555555444
No 384
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=42.81 E-value=1.5e+02 Score=24.52 Aligned_cols=13 Identities=15% Similarity=0.289 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 043159 132 VSESHDRVLQENA 144 (201)
Q Consensus 132 L~~~~~~l~~EN~ 144 (201)
|.+....+..++.
T Consensus 120 l~~~~~~l~~~~q 132 (145)
T COG1730 120 LAQRIEQLEQEAQ 132 (145)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 385
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=42.64 E-value=1.6e+02 Score=22.96 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043159 132 VSESHDRVLQENARLREEASDLR 154 (201)
Q Consensus 132 L~~~~~~l~~EN~~Lrael~~Lr 154 (201)
...+++.+.++|..|++++..|+
T Consensus 62 ~~~e~~~L~~~~~~l~~ei~~L~ 84 (117)
T COG2919 62 QQAELEKLSARNTALEAEIKDLK 84 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 33333444444444444444444
No 386
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=42.60 E-value=1.6e+02 Score=22.95 Aligned_cols=45 Identities=13% Similarity=0.268 Sum_probs=22.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 90 MISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSE 134 (201)
Q Consensus 90 ~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~ 134 (201)
-..-||.|+.-.-=++...+.|+.--+.|..+...-+.+|+.+.+
T Consensus 53 ~f~krE~A~E~~Y~r~~EkEqL~~Lk~kl~~e~~~~~k~i~~le~ 97 (100)
T PF04568_consen 53 AFGKREAAQEEQYFRKKEKEQLKKLKEKLKEEIEHHRKEIDELEK 97 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566776655545544444444444444444334444444433
No 387
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=42.29 E-value=2.4e+02 Score=24.76 Aligned_cols=36 Identities=11% Similarity=0.307 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 116 VRLRTENHNLIDKLNHVSESHDRVLQENARLREEAS 151 (201)
Q Consensus 116 ~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~ 151 (201)
......-+....+|..|++.++.|..||.+||.-+.
T Consensus 44 ~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCC 79 (195)
T PF10226_consen 44 KEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCC 79 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333333344555666777778888888888887663
No 388
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=42.20 E-value=1.2e+02 Score=24.60 Aligned_cols=38 Identities=11% Similarity=0.176 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043159 125 LIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQL 162 (201)
Q Consensus 125 L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~~ 162 (201)
|..+++.|.-+...+...-..|+.++.+|+..|.++-.
T Consensus 75 L~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~ 112 (119)
T COG1382 75 LEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALG 112 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333344444444555556667777778877777653
No 389
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=42.16 E-value=2.2e+02 Score=24.81 Aligned_cols=18 Identities=22% Similarity=0.484 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 043159 144 ARLREEASDLRQMLTELQ 161 (201)
Q Consensus 144 ~~Lrael~~Lr~~L~~l~ 161 (201)
..|...+.+.+.+|..|.
T Consensus 123 ~~l~~~l~ea~~mL~emr 140 (264)
T PF06008_consen 123 EDLQRALAEAQRMLEEMR 140 (264)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333334444444443
No 390
>COG5570 Uncharacterized small protein [Function unknown]
Probab=42.07 E-value=49 Score=23.51 Aligned_cols=50 Identities=22% Similarity=0.252 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQ 155 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~ 155 (201)
.|+.+|+.+-..|+.|.+.-...-..=-..+..|....-+|+.++..|+.
T Consensus 5 shl~eL~kkHg~le~ei~ea~n~Ps~dd~~i~eLKRrKL~lKeeIEkLka 54 (57)
T COG5570 5 SHLAELEKKHGNLEREIQEAMNSPSSDDLAIRELKRRKLRLKEEIEKLKA 54 (57)
T ss_pred HHHHHHHHhhchHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHhc
Confidence 46667776666666655443222111111233344445556666666654
No 391
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=41.75 E-value=2.4e+02 Score=25.67 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 107 HLDELWSHVVRLRTENHNLIDKLNH 131 (201)
Q Consensus 107 ~l~eLe~qV~~L~~EN~~L~~el~~ 131 (201)
.+.+|+.+++.++.+...+..++..
T Consensus 35 ~~~~l~~~~~~~~~~~~~~~~~~~~ 59 (378)
T TIGR01554 35 EKEELETDVEKLKEEIKLLEDAIAD 59 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666555555554444
No 392
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=41.58 E-value=72 Score=24.68 Aligned_cols=12 Identities=33% Similarity=0.324 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHH
Q 043159 139 VLQENARLREEA 150 (201)
Q Consensus 139 l~~EN~~Lrael 150 (201)
+..||..|+.-+
T Consensus 90 L~~E~diLKKa~ 101 (121)
T PRK09413 90 KTMENELLKEAV 101 (121)
T ss_pred HHHHHHHHHHHH
Confidence 344555554443
No 393
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=41.39 E-value=1.3e+02 Score=22.28 Aligned_cols=45 Identities=20% Similarity=0.277 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 110 ELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLR 154 (201)
Q Consensus 110 eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr 154 (201)
+|..++...+.|-..-.-+.....+-+.++..|...+|+.+.+|.
T Consensus 26 ~LRk~l~~~rqELs~aLYq~DAA~RViArl~kErd~ar~~l~~l~ 70 (70)
T PF08606_consen 26 TLRKQLDQTRQELSHALYQHDAACRVIARLLKERDEAREALAELQ 70 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhcC
No 394
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=41.32 E-value=2.9e+02 Score=26.01 Aligned_cols=33 Identities=12% Similarity=0.100 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 043159 135 SHDRVLQENARLREEASDLRQMLTELQLSSPYT 167 (201)
Q Consensus 135 ~~~~l~~EN~~Lrael~~Lr~~L~~l~~~~~~~ 167 (201)
++..+.++=..+++++...+..|....+-+|++
T Consensus 292 ~l~~~~~~l~~~~~~l~~a~~~l~~~~I~AP~d 324 (457)
T TIGR01000 292 EITDLNQKLLELESKIKSLKEDSQKGVIKAPED 324 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCEEECCCC
Confidence 333444444445555555555555555667775
No 395
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=41.26 E-value=2.1e+02 Score=23.75 Aligned_cols=13 Identities=15% Similarity=0.480 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 043159 108 LDELWSHVVRLRT 120 (201)
Q Consensus 108 l~eLe~qV~~L~~ 120 (201)
+++|-.++..|++
T Consensus 8 iE~LInrInelQQ 20 (134)
T PF15233_consen 8 IEDLINRINELQQ 20 (134)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444444
No 396
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=41.26 E-value=4.4e+02 Score=27.50 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 99 RSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSES 135 (201)
Q Consensus 99 RSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~ 135 (201)
++|.+-...+..|......|+.+-..-...+..+..+
T Consensus 507 ~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~Q 543 (739)
T PF07111_consen 507 RAREQGEAERQQLSEVAQQLEQELQEKQESLAELEEQ 543 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555544444444444333
No 397
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=41.09 E-value=3.4e+02 Score=28.11 Aligned_cols=44 Identities=16% Similarity=0.191 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 043159 123 HNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQLSSPY 166 (201)
Q Consensus 123 ~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~~~~~~ 166 (201)
..+...+..+...+..+..-+.+|.+++..|+.+|..++....+
T Consensus 583 e~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~~ 626 (698)
T KOG0978|consen 583 EQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKEESG 626 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 33333333333334344444577777778888888888765553
No 398
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=41.02 E-value=1.3e+02 Score=25.95 Aligned_cols=28 Identities=21% Similarity=0.275 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 134 ESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 134 ~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
.+++.|..++..|+.++..-+++|..|.
T Consensus 130 ~~lD~Lr~qq~~Lq~qL~~T~RKLEnLT 157 (179)
T PF13942_consen 130 SELDALRQQQQRLQYQLDTTTRKLENLT 157 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3567777788888888888888877775
No 399
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=41.02 E-value=5.2e+02 Score=28.29 Aligned_cols=46 Identities=15% Similarity=0.343 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 116 VRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 116 ~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
..|.-|-.+|..++.....++.++..+=..|+.++..|+..+....
T Consensus 818 e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~ 863 (1174)
T KOG0933|consen 818 ERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVE 863 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3344444444444555555555555555556666666666655544
No 400
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=40.66 E-value=3e+02 Score=26.76 Aligned_cols=66 Identities=20% Similarity=0.256 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 96 SARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 96 SARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
.++..=.+.+..+..|...|..|+.+-...+..+..+++........-..|..++..++..|..+.
T Consensus 292 ~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~ 357 (522)
T PF05701_consen 292 EAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAK 357 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHH
Confidence 344444444555555666666666666666666666666666666666667777777777776655
No 401
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=40.63 E-value=1.2e+02 Score=27.23 Aligned_cols=15 Identities=40% Similarity=0.547 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q 043159 144 ARLREEASDLRQMLT 158 (201)
Q Consensus 144 ~~Lrael~~Lr~~L~ 158 (201)
..|..++..|...|.
T Consensus 51 ~~l~~~~~~L~~aL~ 65 (304)
T PF02646_consen 51 QQLSQEASNLTSALK 65 (304)
T ss_pred HHHHHHHHHHHHHHh
Confidence 444444444444444
No 402
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=40.58 E-value=1.2e+02 Score=24.85 Aligned_cols=56 Identities=13% Similarity=0.127 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 043159 108 LDELWSHVVRLRT-ENHNLIDKLNHVSE--------SHDRVLQENARLREEASDLRQMLTELQLS 163 (201)
Q Consensus 108 l~eLe~qV~~L~~-EN~~L~~el~~L~~--------~~~~l~~EN~~Lrael~~Lr~~L~~l~~~ 163 (201)
++.|+.+++.|.. +..++..++..... .++....+-..|..++..|.++|....+-
T Consensus 10 ~~~L~~El~~L~~~~r~~~~~~i~~Ar~~GDlsENaeY~aak~~~~~le~rI~~L~~~L~~A~ii 74 (156)
T TIGR01461 10 YEKLKQELNYLWREERPEVTQKVTWAASLGDRSENADYQYGKKRLREIDRRVRFLTKRLENLKVV 74 (156)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHhcCEEe
Confidence 3455556666642 44444454444322 34445556668888999999999988764
No 403
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=40.49 E-value=24 Score=34.57 Aligned_cols=23 Identities=17% Similarity=0.449 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043159 107 HLDELWSHVVRLRTENHNLIDKL 129 (201)
Q Consensus 107 ~l~eLe~qV~~L~~EN~~L~~el 129 (201)
+|++|++|+++|+++...|..++
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v 54 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRV 54 (489)
T ss_pred HHHHHHHHHHHHHHhhccccccc
Confidence 44555555555444444333333
No 404
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=40.44 E-value=1e+02 Score=28.00 Aligned_cols=31 Identities=26% Similarity=0.324 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 106 RHLDELWSHVVRLRTENHNLIDKLNHVSESH 136 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~ 136 (201)
.-.+.|+.++..|+.+|..|+.+++.+..+.
T Consensus 32 ~l~~~l~~~~~~lr~e~~~l~~~~~~~~~~~ 62 (308)
T PF11382_consen 32 NLIDSLEDQFDSLREENDELRAELDALQAQL 62 (308)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777778888877777777776655543
No 405
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=40.41 E-value=1.7e+02 Score=22.66 Aligned_cols=19 Identities=32% Similarity=0.427 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 043159 143 NARLREEASDLRQMLTELQ 161 (201)
Q Consensus 143 N~~Lrael~~Lr~~L~~l~ 161 (201)
...+..+...|..+|.+..
T Consensus 46 ~~~~e~k~~~le~~l~e~~ 64 (100)
T PF06428_consen 46 RAALEEKNEQLEKQLKEKE 64 (100)
T ss_dssp HHHHHHHHHHHHHCTTHHC
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 406
>PRK12705 hypothetical protein; Provisional
Probab=40.05 E-value=3.8e+02 Score=26.48 Aligned_cols=9 Identities=33% Similarity=0.305 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 043159 94 RESARRSRM 102 (201)
Q Consensus 94 RESARRSR~ 102 (201)
++-+.+.|.
T Consensus 58 ~~~~~~~~~ 66 (508)
T PRK12705 58 KELLLRERN 66 (508)
T ss_pred HHHHHHHHH
Confidence 333333333
No 407
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=39.98 E-value=9.5 Score=34.12 Aligned_cols=32 Identities=22% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 108 LDELWSHVVRLRTENHNLIDKLNHVSESHDRV 139 (201)
Q Consensus 108 l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l 139 (201)
+.+|...|..|..+|+.|+.++..|..+..+|
T Consensus 131 I~dLrrlVe~L~aeNErLr~EnkqL~ae~arL 162 (243)
T PF08961_consen 131 IADLRRLVEFLLAENERLRRENKQLKAENARL 162 (243)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443333
No 408
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=39.97 E-value=4.2e+02 Score=27.23 Aligned_cols=30 Identities=20% Similarity=0.340 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 105 QRHLDELWSHVVRLRTENHNLIDKLNHVSE 134 (201)
Q Consensus 105 q~~l~eLe~qV~~L~~EN~~L~~el~~L~~ 134 (201)
.+.+.+|+.+.+.|+..-+.|..+++.+.+
T Consensus 578 l~~L~~l~e~~~~l~~~ae~LaeR~e~a~d 607 (717)
T PF10168_consen 578 LKELQELQEERKSLRESAEKLAERYEEAKD 607 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666566665555443
No 409
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=39.94 E-value=3.5e+02 Score=25.97 Aligned_cols=37 Identities=22% Similarity=0.384 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 125 LIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 125 L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
+..-+..+.+++..+..+-..|..++.+|+.+|..++
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 165 (525)
T TIGR02231 129 WFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQ 165 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444555555555555555555555555554
No 410
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=39.89 E-value=89 Score=28.52 Aligned_cols=53 Identities=19% Similarity=0.230 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 83 DERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSES 135 (201)
Q Consensus 83 deRR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~ 135 (201)
.-|..|+++.+....=+.+.-.-..|..|+.++..++.++.....+|..++++
T Consensus 142 p~R~~r~~l~d~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL~n~kR~ 194 (271)
T PF13805_consen 142 PSRDRRRKLQDEIAKLKYKDPQSPKLVVLEQELVRAEAENLVAEAQLSNIKRQ 194 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhHHHHHHHHhhHH
Confidence 34566667777765433333333478999999999999998888888888765
No 411
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=39.85 E-value=2e+02 Score=23.28 Aligned_cols=57 Identities=18% Similarity=0.296 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043159 106 RHLDELWSHVVRLRTENHNLIDKLN-----HVSESHDRVLQENARLREEASDLRQMLTELQL 162 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~el~-----~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~~ 162 (201)
+.+..++.++.+|+.+-..+..+.. .+..-...+..|-..+.+....|...+..+..
T Consensus 27 ~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~r~e~k~~l~~ql~qv~~ 88 (131)
T PF11068_consen 27 EQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQERLEQKNQLLQQLEQVQK 88 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444555555666665555555543 33333456777777888888888888777763
No 412
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=39.74 E-value=1.6e+02 Score=22.49 Aligned_cols=24 Identities=21% Similarity=0.219 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 043159 137 DRVLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 137 ~~l~~EN~~Lrael~~Lr~~L~~l 160 (201)
..++.|=..|+..+.....+|+.|
T Consensus 39 ~~lE~E~~~l~~~l~~~E~eL~~L 62 (85)
T PF15188_consen 39 RSLEKELNELKEKLENNEKELKLL 62 (85)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHH
Confidence 334444444444444444444444
No 413
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=39.66 E-value=43 Score=22.92 Aligned_cols=12 Identities=17% Similarity=0.291 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q 043159 106 RHLDELWSHVVR 117 (201)
Q Consensus 106 ~~l~eLe~qV~~ 117 (201)
+++++++.+++.
T Consensus 55 k~l~~le~e~~~ 66 (68)
T PF06305_consen 55 KELKKLEKELEQ 66 (68)
T ss_pred HHHHHHHHHHHh
Confidence 344444444443
No 414
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=39.36 E-value=66 Score=24.13 Aligned_cols=17 Identities=18% Similarity=0.417 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 043159 116 VRLRTENHNLIDKLNHV 132 (201)
Q Consensus 116 ~~L~~EN~~L~~el~~L 132 (201)
..|..||.+|+.++..+
T Consensus 3 ~ei~eEn~~Lk~eiqkl 19 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKL 19 (76)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45566666666655543
No 415
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=39.29 E-value=1.8e+02 Score=24.33 Aligned_cols=46 Identities=28% Similarity=0.392 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 116 VRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 116 ~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
+..+.|...|..++..++.....+-.+-..|.......|.+|..+-
T Consensus 23 E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS 68 (159)
T PF05384_consen 23 EQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVS 68 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666666666666666666666666666665554
No 416
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=39.27 E-value=3.3e+02 Score=25.56 Aligned_cols=49 Identities=16% Similarity=0.241 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 113 SHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 113 ~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
.++..|..+-..++.++..+++++..+..-...+..++.++...|...+
T Consensus 266 ~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK 314 (359)
T PF10498_consen 266 NQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVK 314 (359)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777777777777888887777777777777777777776665
No 417
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=39.18 E-value=31 Score=23.64 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 043159 104 KQRHLDELWSHVVRLRTENHNL 125 (201)
Q Consensus 104 Kq~~l~eLe~qV~~L~~EN~~L 125 (201)
-+.++..++++++.++.|.++|
T Consensus 46 ~r~~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 46 LRRRIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3344455555665555555543
No 418
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=39.01 E-value=1.7e+02 Score=27.33 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 106 RHLDELWSHVVRLRTENHNLIDKLNH 131 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~el~~ 131 (201)
++++.|+.++..|+.+-.+|..+++.
T Consensus 242 ~~~~~l~~~~~~~~~~i~~l~~~l~~ 267 (406)
T PF02388_consen 242 EYLESLQEKLEKLEKEIEKLEEKLEK 267 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67777777777777777777776544
No 419
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=38.94 E-value=2e+02 Score=28.28 Aligned_cols=43 Identities=19% Similarity=0.174 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159 118 LRTENHNLIDKLNHVSES-------HDRVLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 118 L~~EN~~L~~el~~L~~~-------~~~l~~EN~~Lrael~~Lr~~L~~l 160 (201)
-.-||..|...++.-.+. .+.|.+.|.+|.-++++=-.+|..+
T Consensus 440 KCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLaaEItrLRtl 489 (593)
T KOG4807|consen 440 KCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLAAEITRLRTL 489 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 334666666555533332 3445555555544444433333333
No 420
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=38.90 E-value=2.7e+02 Score=29.74 Aligned_cols=71 Identities=24% Similarity=0.333 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHH-------HHHHH--HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 94 RESARRSRMRKQR--HLDELWSHVVR-------LRTEN--HNLI-DKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 94 RESARRSR~RKq~--~l~eLe~qV~~-------L~~EN--~~L~-~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
|+.|++++.+++. ++..++.++.- |-..+ ..+. .++..+.++.+.+..|-..|.+++..+..++..|.
T Consensus 729 ~e~A~~~qq~~q~~srl~~~~aql~~v~~~~~eL~~~~~~~~~~e~E~~~lEe~~d~~~ee~~el~a~v~~~~~qi~~lE 808 (984)
T COG4717 729 REAAREEQQLTQRESRLESLEAQLEGVAAEAYELSASLDQRELKEEELALLEEAIDALDEEVEELHAQVAALSRQIAQLE 808 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677777766652 34444444431 11111 1122 33344444555555566667777777777777666
Q ss_pred cCC
Q 043159 162 LSS 164 (201)
Q Consensus 162 ~~~ 164 (201)
.++
T Consensus 809 ~g~ 811 (984)
T COG4717 809 GGG 811 (984)
T ss_pred cCC
Confidence 443
No 421
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=38.81 E-value=2.9e+02 Score=24.71 Aligned_cols=17 Identities=18% Similarity=0.362 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHhh
Q 043159 145 RLREEASDLRQMLTELQ 161 (201)
Q Consensus 145 ~Lrael~~Lr~~L~~l~ 161 (201)
.+++++.+++..+..+.
T Consensus 250 ~~~~~l~~~~~~l~~~~ 266 (423)
T TIGR01843 250 EAQARLAELRERLNKAR 266 (423)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555555544
No 422
>PF08687 ASD2: Apx/Shroom domain ASD2; InterPro: IPR014799 Cell shape changes require the coordination of actin and microtubule cytoskeletons. The Shroom family is a small group of related proteins that are defined by sequence similarity and in most cases by some link to the actin cytoskeleton. The Shroom (Shrm) protein family is found only in animals. Proteins of this family are predicted to be utilised in multiple morphogenic and developmental processes across animal phyla to regulate cells shape or intracellular architecture in an actin and myosin-dependent manner []. While the founding member of the Shrm family is Shrm1 (formerly Apx), it appears that this protein is found only in Xenopus []. In mice and humans, the Shrm family of proteins consists of: Shrm2 (formerly Apxl), a protein involved in the morphogenesis, maintenance, and/or function of vascular endothelial cells. Shrm3 (formerly Shroom), a protein necessary for neural tube closure in vertebrate development as deficiency in Shrm results in spina bifida. Shrm3 is also conserved in some invertebrates, as orthologues can be found in sea urchins. Shrm4, a regulator of cyto-skeletal architecture that may play an important role in vertebrate development. It is implicated in X-linked mental retardation in humans. This protein family is based on the conservation of a specific arrangement of an N-terminal PDZ domain, a centrally positioned sequence motif termed ASD1 (Apx/Shrm Domain 1) and a C-terminal motif termed ASD2 [, , ]. Shrm2 and Shrm3 contain all three domains, while Shrm4 contains the PDZ and ASD2 domains, but lacks a discernible ASD1 element. To date, the ASD1 and ASD2 elements have only been found in Shrm-related proteins and do not appear in combination with other conserved domains. ASD1 is required for targeting actin, while ASD2 is capable of eliciting an actomyosin based constriction event [, ]. ASD2 is the most highly conserved sequence element shared by Shrm1, Shrm2, Shrm3, and Shrm4. It possesses a well conserved series of leucine residues that exhibit spacing consistent with that of a leucine zipper motif []. Shroom2 is both necessary and sufficient to govern the localization of pigment granules at the apical surface of epithelial cells. Shroom2 is a central regulator of RPE pigmentation. Despite their diverse biological roles, Shroom family proteins share a common activity. Since the locus encoding human SHROOM2 lies within the critical region for two distinct forms of ocular albinism, it is possible that SHROOM2 mutations may contribute to human visual system disorders [].; GO: 0000902 cell morphogenesis, 0005737 cytoplasm; PDB: 3THF_B.
Probab=38.80 E-value=1.5e+02 Score=27.00 Aligned_cols=28 Identities=18% Similarity=0.325 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 103 RKQRHLDELWSHVVRLRTENHNLIDKLN 130 (201)
Q Consensus 103 RKq~~l~eLe~qV~~L~~EN~~L~~el~ 130 (201)
||.+-++.|..++..|+.+...|..++.
T Consensus 90 Kk~eLi~~l~~kl~~L~~eqe~l~ee~~ 117 (264)
T PF08687_consen 90 KKVELIESLSKKLEVLQEEQEALQEEIQ 117 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666677766666666555544
No 423
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=38.78 E-value=1.8e+02 Score=26.93 Aligned_cols=39 Identities=23% Similarity=0.279 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 101 RMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRV 139 (201)
Q Consensus 101 R~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l 139 (201)
|++..+.+.+|+.+...|..+|...+..+..|...+..+
T Consensus 103 Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l 141 (355)
T PF09766_consen 103 RKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSL 141 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 334455566666666666666666666665555554444
No 424
>PLN03188 kinesin-12 family protein; Provisional
Probab=38.77 E-value=1e+02 Score=33.82 Aligned_cols=43 Identities=23% Similarity=0.226 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 115 VVRLRTENHNLIDKLNHVS------------------------ESHDRVLQENARLREEASDLRQML 157 (201)
Q Consensus 115 V~~L~~EN~~L~~el~~L~------------------------~~~~~l~~EN~~Lrael~~Lr~~L 157 (201)
...|+.||..|+.+|.... ++...++.||..|+.++.+|.++-
T Consensus 1175 r~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~klkrkh 1241 (1320)
T PLN03188 1175 RRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLKRKH 1241 (1320)
T ss_pred HHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555888888876432 335567889999999999888775
No 425
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=38.74 E-value=2.8e+02 Score=25.29 Aligned_cols=54 Identities=20% Similarity=0.277 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159 107 HLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 107 ~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l 160 (201)
.+.+.+.++...+.+-..+..++..+..+++....|...|..++.....+|...
T Consensus 229 ~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA 282 (344)
T PF12777_consen 229 ELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERA 282 (344)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccH
Confidence 344444444455555555555555555555555555555655555555555443
No 426
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=38.70 E-value=10 Score=37.90 Aligned_cols=34 Identities=24% Similarity=0.356 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 102 MRKQRHLDELWSHVVRLRTENHNLIDKLNHVSES 135 (201)
Q Consensus 102 ~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~ 135 (201)
++|-+.+..|..+|..|+..|..|...+..|.++
T Consensus 321 KkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEee 354 (713)
T PF05622_consen 321 KKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEE 354 (713)
T ss_dssp ----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888888888887776666555443
No 427
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=38.53 E-value=1.5e+02 Score=25.66 Aligned_cols=54 Identities=24% Similarity=0.308 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 043159 110 ELWSHVVRLRTENHNLIDKLNHVS--ESHDRVLQENARLREEASDLRQMLTELQLS 163 (201)
Q Consensus 110 eLe~qV~~L~~EN~~L~~el~~L~--~~~~~l~~EN~~Lrael~~Lr~~L~~l~~~ 163 (201)
+++.+++.|+.+-.+|..-++... +..-.++.|=.+++.++..++.++..|...
T Consensus 136 D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~ 191 (262)
T PF14257_consen 136 DLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDR 191 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444444443333221 223334444445556666666666666543
No 428
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=38.53 E-value=1.4e+02 Score=32.20 Aligned_cols=37 Identities=19% Similarity=0.230 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 102 MRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDR 138 (201)
Q Consensus 102 ~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~ 138 (201)
..+.+.+..++.....++.++.+|..+++.++.+...
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (1123)
T PRK11448 173 EAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAE 209 (1123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555566777777777777766554433
No 429
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=38.52 E-value=1.4e+02 Score=29.54 Aligned_cols=42 Identities=24% Similarity=0.272 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHH
Q 043159 116 VRLRTENHNLIDKLNHVSE------------------------SHDRVLQENARLREEASDLRQML 157 (201)
Q Consensus 116 ~~L~~EN~~L~~el~~L~~------------------------~~~~l~~EN~~Lrael~~Lr~~L 157 (201)
..|+.||..|+.++....+ ....++.||..|+.++.+|..+-
T Consensus 406 ~~l~~eNk~L~~QLrDTAEAVqAagEllvrl~eaeea~~~a~~r~~~~eqe~ek~~kqiekLK~kh 471 (488)
T PF06548_consen 406 RFLKDENKGLQIQLRDTAEAVQAAGELLVRLREAEEAASVAQERAMDAEQENEKAKKQIEKLKRKH 471 (488)
T ss_pred HHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444488888887764432 24456778888888888887653
No 430
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=38.50 E-value=2.6e+02 Score=32.07 Aligned_cols=47 Identities=19% Similarity=0.327 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 115 VVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 115 V~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
-..+..+-..|...+..+..++..+..+|..|..++..+++.++++.
T Consensus 117 ~se~~~qkr~l~~~le~~~~ele~l~~~n~~l~~ql~ss~~~~~e~e 163 (1822)
T KOG4674|consen 117 KSELQEQKRQLMELLERQKAELEALESENKDLNDQLKSSTKTLSELE 163 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444455556666777888888888888888888887776
No 431
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=38.23 E-value=5.1e+02 Score=28.43 Aligned_cols=11 Identities=9% Similarity=-0.175 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 043159 106 RHLDELWSHVV 116 (201)
Q Consensus 106 ~~l~eLe~qV~ 116 (201)
+++++++..+.
T Consensus 882 ~~le~ae~~l~ 892 (1353)
T TIGR02680 882 ARAARAESDAR 892 (1353)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 432
>PRK11281 hypothetical protein; Provisional
Probab=38.06 E-value=4e+02 Score=28.91 Aligned_cols=47 Identities=19% Similarity=0.137 Sum_probs=26.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 84 ERKQRRMISNRESARRSRMRKQ-----------RHLDELWSHVVRLRTENHNLIDKLN 130 (201)
Q Consensus 84 eRR~RR~lsNRESARRSR~RKq-----------~~l~eLe~qV~~L~~EN~~L~~el~ 130 (201)
||.+.|+-.|+.-...-+.+-+ .+...|+.+...+..+|..++.++.
T Consensus 159 ERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~~~~~~~~~~l~ 216 (1113)
T PRK11281 159 ERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSLE 216 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555566666655555554432 3455666667667666666555544
No 433
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=37.94 E-value=2.8e+02 Score=24.28 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 043159 138 RVLQENARLREEASDLRQMLTELQL 162 (201)
Q Consensus 138 ~l~~EN~~Lrael~~Lr~~L~~l~~ 162 (201)
.+..+=+.|+.++...+.+|..+..
T Consensus 120 emQe~i~~L~kev~~~~erl~~~k~ 144 (201)
T KOG4603|consen 120 EMQEEIQELKKEVAGYRERLKNIKA 144 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666666666653
No 434
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=37.80 E-value=2.2e+02 Score=23.01 Aligned_cols=64 Identities=13% Similarity=0.182 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 95 ESARRSRMRKQRHLDELWSHVVRLRTEN-HNLIDKLNHVSESHDRVLQENARLREEASDLRQMLT 158 (201)
Q Consensus 95 ESARRSR~RKq~~l~eLe~qV~~L~~EN-~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~ 158 (201)
.++..........+..|+.....|..+. ..++.++..|.-.+..+..-+..+|.++.+|..-+.
T Consensus 51 ~~~~~~~~~~~~~~~~l~~~~~kl~~E~~~~~q~EldDLL~ll~Dle~K~~kyk~rLk~LG~eVS 115 (136)
T PF04871_consen 51 QAAEAELEELASEVKELEAEKEKLKEEARKEAQSELDDLLVLLGDLEEKRKKYKERLKELGEEVS 115 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHcCCCcc
Confidence 3333344455555666666666666555 556677777777777777777777777777766553
No 435
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=37.68 E-value=3.9e+02 Score=29.15 Aligned_cols=72 Identities=15% Similarity=0.189 Sum_probs=54.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 90 MISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 90 ~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
.+.-...-..|++|.......|...+..+...-..+...+..+...+.....+=..+..++.+.+++|.+..
T Consensus 407 lE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql~das 478 (1141)
T KOG0018|consen 407 LEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEELVEVLDQLLDAS 478 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhh
Confidence 444445556677888888888888888888888888888888887777777777777777777777776665
No 436
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=37.66 E-value=3e+02 Score=30.14 Aligned_cols=63 Identities=24% Similarity=0.262 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 043159 104 KQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQLSSPY 166 (201)
Q Consensus 104 Kq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~~~~~~ 166 (201)
+...+-....++..+..+...+..++..+......+..+-..|..++..++.++..++.+..|
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~~~a~ 329 (1353)
T TIGR02680 267 RATRLRSAQTQYDQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEALQGSPAY 329 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 333334444555566666666666666666666666666666666777777777766654443
No 437
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=37.65 E-value=1.2e+02 Score=31.07 Aligned_cols=47 Identities=23% Similarity=0.197 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 107 HLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDL 153 (201)
Q Consensus 107 ~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~L 153 (201)
.+++|..+-..|+.|+..-+.--..|.+++..++.|=..+|+++..-
T Consensus 330 kVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~a 376 (832)
T KOG2077|consen 330 KVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDA 376 (832)
T ss_pred HHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555554444333344444444444444444444433
No 438
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=37.25 E-value=2.1e+02 Score=26.71 Aligned_cols=55 Identities=22% Similarity=0.338 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------HHHHHHHHHHHHHHHHHHH
Q 043159 107 HLDELWSHVVRLRTENHNLIDKLNHVSESHDR-----------------------------VLQENARLREEASDLRQML 157 (201)
Q Consensus 107 ~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~-----------------------------l~~EN~~Lrael~~Lr~~L 157 (201)
.-+.++.++.+|+.||--|+.++..+..+.+. |+..|..|-.++..|+.++
T Consensus 215 Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~n~LkEr~ 294 (305)
T PF14915_consen 215 KQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQAESEKQVLLLEERNKELINECNHLKERL 294 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34567889999999999999998876544221 4445666777777777766
Q ss_pred HHhh
Q 043159 158 TELQ 161 (201)
Q Consensus 158 ~~l~ 161 (201)
....
T Consensus 295 ~qyE 298 (305)
T PF14915_consen 295 YQYE 298 (305)
T ss_pred HHHH
Confidence 6543
No 439
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=37.14 E-value=1.4e+02 Score=27.92 Aligned_cols=53 Identities=15% Similarity=0.246 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043159 110 ELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQL 162 (201)
Q Consensus 110 eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~~ 162 (201)
.|..+|..++.....|..++..+.+....+..+...|...+.+|..+...-++
T Consensus 141 ~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsRRnNi 193 (370)
T PF02994_consen 141 SLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSRRNNI 193 (370)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEE
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccCCce
Confidence 45566666666666666666666666666666666677777777766666553
No 440
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=37.05 E-value=2.4e+02 Score=27.60 Aligned_cols=55 Identities=9% Similarity=0.206 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 043159 102 MRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASD-LRQM 156 (201)
Q Consensus 102 ~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~-Lr~~ 156 (201)
..|+.+.+.+...+..+......++.++..+..+++.+..+=+.|+.++++ |-.+
T Consensus 442 ~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~~ISk~ 497 (507)
T PF05600_consen 442 QQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIEADISKR 497 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777788888888888888888888888888888888888888888765 4443
No 441
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=36.99 E-value=3.1e+02 Score=25.66 Aligned_cols=11 Identities=9% Similarity=0.217 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 043159 145 RLREEASDLRQ 155 (201)
Q Consensus 145 ~Lrael~~Lr~ 155 (201)
.|+..+..++.
T Consensus 198 ~lq~~L~~~~~ 208 (342)
T PF06632_consen 198 ELQRLLASAKE 208 (342)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhc
Confidence 34444444444
No 442
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=36.91 E-value=2.7e+02 Score=28.82 Aligned_cols=58 Identities=19% Similarity=0.193 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 97 ARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLR 154 (201)
Q Consensus 97 ARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr 154 (201)
+..+..-=+.+++..+.++.+++..-..+..++.....+...++.|+..|+-.+..++
T Consensus 564 ~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k 621 (698)
T KOG0978|consen 564 AKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLK 621 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4445555667888888899999999999999999999999999999999998876544
No 443
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=36.85 E-value=2.6e+02 Score=23.55 Aligned_cols=62 Identities=19% Similarity=0.288 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159 99 RSRMRKQRHLDELWSHVVR-LRT-------ENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 99 RSR~RKq~~l~eLe~qV~~-L~~-------EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l 160 (201)
+-|.+|+--.+.+..++.. +.. ++..|..--..+...-.....-|..|+.++..|-.....+
T Consensus 117 kKR~~k~lDyd~~~~k~~k~~~~k~~~~~kd~~kl~kae~~l~~a~~~y~~lN~~Lk~eLP~l~~~~~~~ 186 (216)
T cd07599 117 KKRDHKKLDYDKLQNKLNKLLQKKKELSLKDEKQLAKLERKLEEAKEEYEALNELLKSELPKLLALADEF 186 (216)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3456677777777777777 432 2333443333444445555667999999998876655443
No 444
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=36.79 E-value=1.5e+02 Score=27.17 Aligned_cols=56 Identities=21% Similarity=0.263 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
+++..+..+.+.|+-+...|.-.-..=.+..+.+.+|-.+|..+...|..+|..+.
T Consensus 186 ~qv~~in~qlErLRL~krrlQl~g~Ld~~~q~~~~ae~seLq~r~~~l~~~L~~L~ 241 (289)
T COG4985 186 QQVRVINSQLERLRLEKRRLQLNGQLDDEFQQHYVAEKSELQKRLAQLQTELDALR 241 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555666666555554332222234456678888888888888888888776
No 445
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=36.76 E-value=39 Score=23.35 Aligned_cols=21 Identities=33% Similarity=0.378 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 043159 106 RHLDELWSHVVRLRTENHNLI 126 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~ 126 (201)
-++.|||.+|..|+.-|..|-
T Consensus 18 vrv~eLEeEV~~LrKINrdLf 38 (48)
T PF14077_consen 18 VRVSELEEEVRTLRKINRDLF 38 (48)
T ss_pred eeHHHHHHHHHHHHHHhHHHH
Confidence 356777777777777776653
No 446
>PRK11519 tyrosine kinase; Provisional
Probab=36.58 E-value=3.3e+02 Score=27.42 Aligned_cols=29 Identities=21% Similarity=0.157 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 93 NRESARRSRMRKQRHLDELWSHVVRLRTE 121 (201)
Q Consensus 93 NRESARRSR~RKq~~l~eLe~qV~~L~~E 121 (201)
+++.|++...==.+++.+++.+++..+.+
T Consensus 261 k~~~a~~a~~fL~~ql~~l~~~L~~aE~~ 289 (719)
T PRK11519 261 KSEEASKSLAFLAQQLPEVRSRLDVAENK 289 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444443344444444444443333
No 447
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=36.54 E-value=76 Score=31.85 Aligned_cols=43 Identities=30% Similarity=0.530 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 043159 125 LIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQLSSPYT 167 (201)
Q Consensus 125 L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~~~~~~~ 167 (201)
+..++..|+.++..|..|+..|+.++..|..+|..+++.+.|+
T Consensus 501 ~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~ 543 (722)
T PF05557_consen 501 LSEELNELQKEIEELERENERLRQELEELESELEKLTLQGEFN 543 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--B
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Confidence 3445556777788888888888888888888888876655554
No 448
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=36.48 E-value=3.5e+02 Score=25.05 Aligned_cols=72 Identities=18% Similarity=0.294 Sum_probs=37.6
Q ss_pred HHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 87 QRRMISNRESARRSRMR-KQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLT 158 (201)
Q Consensus 87 ~RR~lsNRESARRSR~R-Kq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~ 158 (201)
.|.-+.+..++-++.+. +-+.+-++..++..++.+-..+..++..++..-..+-..=..|+..+..++....
T Consensus 28 kR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~ 100 (294)
T COG1340 28 KRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRN 100 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555555555443 3345555666666666666666666665555444444443444444444444444
No 449
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=36.34 E-value=1.6e+02 Score=23.54 Aligned_cols=49 Identities=20% Similarity=0.310 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 113 SHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 113 ~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
.++..++.....|..++=.+....+-+..-+..|..+=..|+.+|..+.
T Consensus 72 ~rl~~~r~r~~~L~hR~l~v~~~~eilr~~g~~l~~eEe~L~~~le~l~ 120 (141)
T PF13874_consen 72 ARLEEARRRHQELSHRLLRVLRKQEILRNRGYALSPEEEELRKRLEALE 120 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 3334444444444444333333333333334444444444454444444
No 450
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=36.31 E-value=5e+02 Score=28.75 Aligned_cols=70 Identities=19% Similarity=0.251 Sum_probs=46.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 92 SNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 92 sNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
++=+.+.-+=.+...++++....+..+..+-..++.++..+...+..+..+-..|+..+.++|+++..+.
T Consensus 521 ~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~k 590 (1293)
T KOG0996|consen 521 KKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAK 590 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555555556666666666666666666667777777777777777777777778888877764
No 451
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=36.27 E-value=1.7e+02 Score=21.26 Aligned_cols=30 Identities=23% Similarity=0.453 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 108 LDELWSHVVRLRTENHNLIDKLNHVSESHD 137 (201)
Q Consensus 108 l~eLe~qV~~L~~EN~~L~~el~~L~~~~~ 137 (201)
++.+..+|..|+..-..|...+..+..++.
T Consensus 16 l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~ 45 (92)
T PF14712_consen 16 LDRLDQQLQELRQSQEELLQQIDRLNEKLK 45 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555554444433
No 452
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=36.23 E-value=1.6e+02 Score=21.03 Aligned_cols=34 Identities=9% Similarity=0.128 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRV 139 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l 139 (201)
.--..++.++......|..|..++..|..+...+
T Consensus 25 ~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 25 SANLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566777777788888887777776655544
No 453
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=36.04 E-value=2.5e+02 Score=23.14 Aligned_cols=13 Identities=8% Similarity=0.248 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 043159 131 HVSESHDRVLQEN 143 (201)
Q Consensus 131 ~L~~~~~~l~~EN 143 (201)
.|+.++..+..+|
T Consensus 55 eLk~~i~~lq~~~ 67 (155)
T PF06810_consen 55 ELKKQIEELQAKN 67 (155)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 454
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.99 E-value=3.9e+02 Score=25.55 Aligned_cols=55 Identities=11% Similarity=0.143 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 104 KQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 104 Kq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
-++.+++|.+.-+.|..--++|....+.|.++...+...=..|+.++.+ .|.++.
T Consensus 230 ~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e---al~~~~ 284 (365)
T KOG2391|consen 230 LQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE---ALEKAE 284 (365)
T ss_pred HHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH---HHhhhc
Confidence 3445555555566666666667777777777777777777777777777 444444
No 455
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=35.88 E-value=2.6e+02 Score=23.43 Aligned_cols=32 Identities=16% Similarity=0.095 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159 129 LNHVSESHDRVLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 129 l~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l 160 (201)
...+..++..++.+...|++.+......|..+
T Consensus 81 r~~l~~~~~~~e~~~a~l~~~l~~~~~~ia~~ 112 (158)
T PF09486_consen 81 RDVLEERVRAAEAELAALRQALRAAEDEIAAT 112 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555554444444443
No 456
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=35.51 E-value=5.2e+02 Score=26.69 Aligned_cols=8 Identities=25% Similarity=0.451 Sum_probs=2.9
Q ss_pred HHHHhHHH
Q 043159 89 RMISNRES 96 (201)
Q Consensus 89 R~lsNRES 96 (201)
+++..-+.
T Consensus 520 ~li~~l~~ 527 (782)
T PRK00409 520 ELIASLEE 527 (782)
T ss_pred HHHHHHHH
Confidence 33333333
No 457
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=35.31 E-value=2.2e+02 Score=30.51 Aligned_cols=16 Identities=13% Similarity=0.225 Sum_probs=12.0
Q ss_pred CCCCccccccccCCCC
Q 043159 19 AQLPANLGMMQANIQP 34 (201)
Q Consensus 19 ~~~~~~~~~~~~~~~~ 34 (201)
.||++.|.++..+|..
T Consensus 20 ~~yssp~qvidlnNes 35 (1265)
T KOG0976|consen 20 APYSSPFQVIDLNNES 35 (1265)
T ss_pred cccCCCceeeeccccc
Confidence 5788888887767764
No 458
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=35.24 E-value=3.8e+02 Score=28.29 Aligned_cols=41 Identities=24% Similarity=0.371 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 115 VVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQ 155 (201)
Q Consensus 115 V~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~ 155 (201)
.+.|..+-..++.++..+...-+++...+..|+.++..|++
T Consensus 218 kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~ 258 (916)
T KOG0249|consen 218 KNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRR 258 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 35566666666777777766677777777777777777774
No 459
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=35.17 E-value=2.4e+02 Score=22.81 Aligned_cols=43 Identities=12% Similarity=0.394 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 119 RTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 119 ~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
......|..+|+.|-.+++....-....+.++.+++.-+...+
T Consensus 60 ~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~ 102 (126)
T PF07889_consen 60 SSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIG 102 (126)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3334445556666665555555555555666655555555444
No 460
>PRK14160 heat shock protein GrpE; Provisional
Probab=35.13 E-value=2.2e+02 Score=24.97 Aligned_cols=24 Identities=8% Similarity=0.134 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 109 DELWSHVVRLRTENHNLIDKLNHV 132 (201)
Q Consensus 109 ~eLe~qV~~L~~EN~~L~~el~~L 132 (201)
..|+.++..|+.....+.+++...
T Consensus 71 ~~l~~e~~elkd~~lR~~AefeN~ 94 (211)
T PRK14160 71 KKLENELEALKDRLLRTVAEYDNY 94 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444433333333333333
No 461
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.03 E-value=1.7e+02 Score=29.91 Aligned_cols=41 Identities=27% Similarity=0.293 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 116 VRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQM 156 (201)
Q Consensus 116 ~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~ 156 (201)
-.|+.|...++-+=..|...+..|+.||-.|..++..||+-
T Consensus 152 ~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~s 192 (772)
T KOG0999|consen 152 RRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQS 192 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhh
Confidence 34444444444444444455555566666666555555543
No 462
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=34.64 E-value=1e+02 Score=23.82 Aligned_cols=23 Identities=4% Similarity=-0.096 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043159 111 LWSHVVRLRTENHNLIDKLNHVS 133 (201)
Q Consensus 111 Le~qV~~L~~EN~~L~~el~~L~ 133 (201)
++.++..|+.++.+|..++..|+
T Consensus 76 ~~~ei~~L~~el~~L~~E~diLK 98 (121)
T PRK09413 76 AMKQIKELQRLLGKKTMENELLK 98 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444333
No 463
>PF06424 PRP1_N: PRP1 splicing factor, N-terminal; InterPro: IPR010491 This domain is specific to the N-terminal part of the prp1 splicing factor, which is involved in mRNA splicing (and possibly also poly(A)+ RNA nuclear export and cell cycle progression). This domain is specific to the N terminus of the RNA splicing factor encoded by prp1 []. It is involved in mRNA splicing and possibly also poly(A)and RNA nuclear export and cell cycle progression.; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005634 nucleus
Probab=34.55 E-value=32 Score=28.16 Aligned_cols=32 Identities=16% Similarity=0.193 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 108 LDELWSHVVRLRTENHNLIDKLNHVSESHDRV 139 (201)
Q Consensus 108 l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l 139 (201)
-..+..++...+.+|-.+..++..|++.+..|
T Consensus 85 e~~~~~e~e~~~~~~pkI~~QFaDLKR~La~V 116 (133)
T PF06424_consen 85 EAREKEEIEKYRKENPKIQQQFADLKRSLATV 116 (133)
T ss_pred hhhhhhHHHhhhccCchHHHHHHHHHHHHccC
Confidence 33445555666666666666666665555444
No 464
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=34.34 E-value=1.9e+02 Score=21.35 Aligned_cols=33 Identities=27% Similarity=0.366 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 111 LWSHVVRLRTENHNLIDKLNHVSESHDRVLQEN 143 (201)
Q Consensus 111 Le~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN 143 (201)
|...|..|..|+..|..++..+.+.+..+..+-
T Consensus 1 L~kdv~~l~~EkeeL~~klk~~qeel~~~k~~~ 33 (69)
T PF08912_consen 1 LTKDVANLAKEKEELNNKLKKQQEELQKLKEEE 33 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777777777776666655544443
No 465
>PRK11239 hypothetical protein; Provisional
Probab=34.30 E-value=76 Score=28.13 Aligned_cols=17 Identities=24% Similarity=0.219 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 043159 138 RVLQENARLREEASDLR 154 (201)
Q Consensus 138 ~l~~EN~~Lrael~~Lr 154 (201)
.|++|-+.|++++.+|.
T Consensus 194 ~Le~eva~L~~~l~~l~ 210 (215)
T PRK11239 194 ALEIEVAELKQRLDSLL 210 (215)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 466
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=34.30 E-value=2.3e+02 Score=25.41 Aligned_cols=40 Identities=20% Similarity=0.235 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHh
Q 043159 121 ENHNLIDKLNHVSESHDRVLQE----NARLREEASDLRQMLTEL 160 (201)
Q Consensus 121 EN~~L~~el~~L~~~~~~l~~E----N~~Lrael~~Lr~~L~~l 160 (201)
....|..|++.|+++...+.++ ...|++|...||+.|.-.
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~~ 110 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNSP 110 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 4456777777777765554222 223667777777655443
No 467
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=34.18 E-value=2.5e+02 Score=26.11 Aligned_cols=31 Identities=13% Similarity=0.433 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 131 HVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 131 ~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
.|..+...|...|..+|+++.+.+.+|.-+.
T Consensus 82 ~l~~qvs~l~~~~~~~r~~~~~~~~~~eglr 112 (389)
T PF06216_consen 82 SLNDQVSHLQHQNSEQRQQIREMREIIEGLR 112 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3333333444556666666666666665554
No 468
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.08 E-value=3.7e+02 Score=26.73 Aligned_cols=70 Identities=23% Similarity=0.250 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHhHHHHHHHHHHHH------------------------------------HHHHHHHHHHHHHHHHHHH
Q 043159 81 IIDERKQRRMISNRESARRSRMRKQ------------------------------------RHLDELWSHVVRLRTENHN 124 (201)
Q Consensus 81 ~~deRR~RR~lsNRESARRSR~RKq------------------------------------~~l~eLe~qV~~L~~EN~~ 124 (201)
+.++.|.-++..|++|++--|-=-- ...+.+..+|..|+.+...
T Consensus 408 il~etreLqkq~ns~se~L~Rsfavtdellf~sakhddhvR~aykllt~iH~nc~ei~E~i~~tg~~~revrdlE~qI~~ 487 (521)
T KOG1937|consen 408 ILEETRELQKQENSESEALNRSFAVTDELLFMSAKHDDHVRLAYKLLTRIHLNCMEILEMIRETGALKREVRDLESQIYV 487 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHhH
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 125 -----LIDKLNHVSESHDRVLQENARLREEA 150 (201)
Q Consensus 125 -----L~~el~~L~~~~~~l~~EN~~Lrael 150 (201)
-...++.+.+.++.+..||..|..++
T Consensus 488 E~~k~~l~slEkl~~Dyqairqen~~L~~~i 518 (521)
T KOG1937|consen 488 EEQKQYLKSLEKLHQDYQAIRQENDQLFSEI 518 (521)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
No 469
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=34.07 E-value=5.7e+02 Score=26.72 Aligned_cols=54 Identities=17% Similarity=0.321 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 104 KQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQML 157 (201)
Q Consensus 104 Kq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L 157 (201)
|...++....++..+..+-..+..++..+...++....+-..|..++..|...|
T Consensus 355 k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l 408 (775)
T PF10174_consen 355 KNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQL 408 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444444444445555555555555544444333
No 470
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=34.01 E-value=1e+02 Score=24.51 Aligned_cols=21 Identities=24% Similarity=0.216 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 043159 114 HVVRLRTENHNLIDKLNHVSE 134 (201)
Q Consensus 114 qV~~L~~EN~~L~~el~~L~~ 134 (201)
+...|+.||.-|+-+++.|..
T Consensus 80 k~~~LeEENNlLklKievLLD 100 (108)
T cd07429 80 KNQQLEEENNLLKLKIEVLLD 100 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777766544
No 471
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=33.93 E-value=2.9e+02 Score=23.24 Aligned_cols=52 Identities=10% Similarity=0.133 Sum_probs=36.7
Q ss_pred chHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 81 IIDERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHV 132 (201)
Q Consensus 81 ~~deRR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L 132 (201)
..-++..+++++.|..|+-.=++|-....+|..++..-+....++...|..+
T Consensus 80 ~~a~~Em~KLi~yk~~aKsyAkkKD~Ea~~L~~KLkeEq~kv~~ME~~v~el 131 (152)
T PF11500_consen 80 EKAEKEMEKLIKYKQLAKSYAKKKDAEAMRLAEKLKEEQEKVAEMERHVTEL 131 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667788889999988888888888888877665555554444444433
No 472
>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]
Probab=33.93 E-value=3.1e+02 Score=28.90 Aligned_cols=21 Identities=24% Similarity=0.246 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 043159 104 KQRHLDELWSHVVRLRTENHN 124 (201)
Q Consensus 104 Kq~~l~eLe~qV~~L~~EN~~ 124 (201)
.-++++|+|+++.-|+.|-.+
T Consensus 54 evrRcdemeRklrfl~~ei~k 74 (829)
T KOG2189|consen 54 EVRRCDEMERKLRFLESEIKK 74 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555554443
No 473
>PLN02678 seryl-tRNA synthetase
Probab=33.90 E-value=4.5e+02 Score=25.48 Aligned_cols=20 Identities=20% Similarity=0.320 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 043159 141 QENARLREEASDLRQMLTEL 160 (201)
Q Consensus 141 ~EN~~Lrael~~Lr~~L~~l 160 (201)
+|=..|++++..|...+..+
T Consensus 78 ~~~~~Lk~ei~~le~~~~~~ 97 (448)
T PLN02678 78 AETKELKKEITEKEAEVQEA 97 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344555555444444443
No 474
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=33.90 E-value=2.8e+02 Score=23.15 Aligned_cols=45 Identities=20% Similarity=0.352 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 110 ELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLR 154 (201)
Q Consensus 110 eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr 154 (201)
++...|..+..+.+.-+.++..|......-...=..|..++.+|+
T Consensus 58 ~~~~~v~~~~~~i~~k~~El~~L~~~d~~kv~~~E~L~d~v~eLk 102 (146)
T PF05852_consen 58 EIKNKVSSLETEISEKKKELSHLKKFDRKKVEDLEKLTDRVEELK 102 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 334444444444444445555544432222333333444444443
No 475
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=33.73 E-value=1.7e+02 Score=22.98 Aligned_cols=29 Identities=14% Similarity=0.276 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 110 ELWSHVVRLRTENHNLIDKLNHVSESHDR 138 (201)
Q Consensus 110 eLe~qV~~L~~EN~~L~~el~~L~~~~~~ 138 (201)
.|+..+..|..+-..+..+++.+......
T Consensus 105 ~l~~~~~~l~~~l~~~~~~~~~~~~~l~~ 133 (140)
T PRK03947 105 ELEKALEKLEEALQKLASRIAQLAQELQQ 133 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433333
No 476
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=33.66 E-value=64 Score=26.09 Aligned_cols=21 Identities=14% Similarity=0.313 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 043159 130 NHVSESHDRVLQENARLREEA 150 (201)
Q Consensus 130 ~~L~~~~~~l~~EN~~Lrael 150 (201)
+.|..++..|.-||..||.++
T Consensus 6 EeLaaeL~kLqmENk~LKkkl 26 (118)
T PF05812_consen 6 EELAAELQKLQMENKALKKKL 26 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555666555544
No 477
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=33.66 E-value=3.4e+02 Score=25.15 Aligned_cols=43 Identities=19% Similarity=0.191 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Q 043159 111 LWSHVVRLRTENHNLIDKLNHVSESHDRVL--QENARLREEASDL 153 (201)
Q Consensus 111 Le~qV~~L~~EN~~L~~el~~L~~~~~~l~--~EN~~Lrael~~L 153 (201)
....+..|+.+...+..++..+..+...+. ..+..+-+|+.-|
T Consensus 91 ~~~~~~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~dW~LaEaeyL 135 (372)
T PF04375_consen 91 QQEQLQQLQQELAQLQQQLAELQQQLAALSQRSRDDWLLAEAEYL 135 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHH
Confidence 334444555555555555555555554443 3455566666554
No 478
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=33.66 E-value=5.2e+02 Score=26.84 Aligned_cols=72 Identities=15% Similarity=0.082 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 85 RKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQM 156 (201)
Q Consensus 85 RR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~ 156 (201)
|-.+-+.+=++|-+.-=.--+..-.+|..+++++....++|++.+..-+.++.+|..+=.+-...+.+|++.
T Consensus 79 r~~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~ 150 (907)
T KOG2264|consen 79 RILREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRET 150 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhh
No 479
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=33.30 E-value=1.7e+02 Score=20.55 Aligned_cols=47 Identities=13% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASD 152 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~ 152 (201)
.....++.-+..--..-.....+-..+.++...|..+|.+|+.-+..
T Consensus 12 ~~~~~~W~~L~~~l~rY~~vL~~R~~l~~e~~~L~~qN~eLr~lLkq 58 (60)
T PF14775_consen 12 DEKIRLWDALENFLKRYNKVLLDRAALIQEKESLEQQNEELRSLLKQ 58 (60)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 480
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=33.25 E-value=2.6e+02 Score=22.48 Aligned_cols=72 Identities=17% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 85 RKQRRMISNRESARRSRMRKQRHLDELWS-------HVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQML 157 (201)
Q Consensus 85 RR~RR~lsNRESARRSR~RKq~~l~eLe~-------qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L 157 (201)
+++.++...-+.|...-.+|++.++.|.. +|..|+.+-..+..++..+...+..+ +..++.++.......
T Consensus 110 ~~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i---~~~~~~El~~f~~~~ 186 (218)
T cd07596 110 DDRADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEI---SERLKEELKRFHEER 186 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q ss_pred HH
Q 043159 158 TE 159 (201)
Q Consensus 158 ~~ 159 (201)
..
T Consensus 187 ~~ 188 (218)
T cd07596 187 AR 188 (218)
T ss_pred HH
No 481
>PRK11281 hypothetical protein; Provisional
Probab=33.13 E-value=2.5e+02 Score=30.41 Aligned_cols=75 Identities=15% Similarity=0.175 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 87 QRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 87 ~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
.||...-.+.+.....-.+.....-.--+..+-..|..|..++..+.++.+.+..+|.+.+..+..+++-+..++
T Consensus 252 ~kr~~~se~~~~~a~~~~~~~~~~~~p~i~~~~~~N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~ 326 (1113)
T PRK11281 252 SKRLTLSEKTVQEAQSQDEAARIQANPLVAQELEINLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIK 326 (1113)
T ss_pred HHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 482
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=33.12 E-value=1.9e+02 Score=21.08 Aligned_cols=54 Identities=19% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 108 LDELWSHVVRLRTENHNLIDKLNHVSES-------HDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 108 l~eLe~qV~~L~~EN~~L~~el~~L~~~-------~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
+++|..+|..|...-.+....+-.|.+. +-.+.++--..-+++.+++++|..+.
T Consensus 4 ~~eLk~evkKL~~~A~~~kmdLHDLaEdLP~~w~~i~~vA~~ty~a~~~l~~ak~~L~~~e 64 (66)
T PF05082_consen 4 IEELKKEVKKLNRKATQAKMDLHDLAEDLPTNWEEIPEVAQKTYDAYAELDEAKAELKAAE 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 483
>PHA02109 hypothetical protein
Probab=33.03 E-value=1.4e+02 Score=26.19 Aligned_cols=39 Identities=23% Similarity=0.280 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 104 KQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQE 142 (201)
Q Consensus 104 Kq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~E 142 (201)
|.+++-+|+.+++.|..|-.+++.++..+++....-..|
T Consensus 191 ~L~~I~~L~~ki~~LS~E~~Q~~~Ki~N~R~~Vk~~LSE 229 (233)
T PHA02109 191 KLKQISELTIKLEALSDEACQVKHKILNLRAEVKRRLSE 229 (233)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 484
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=32.96 E-value=35 Score=26.04 Aligned_cols=53 Identities=25% Similarity=0.282 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 109 DELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 109 ~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
++...-+..|..+...|..++..|..++..+..+...++.....|++.|...+
T Consensus 21 ~eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~aq 73 (131)
T PF05103_consen 21 DEVDDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQAQ 73 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhhh
No 485
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=32.89 E-value=4.7e+02 Score=28.59 Aligned_cols=73 Identities=18% Similarity=0.242 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159 88 RRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 88 RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l 160 (201)
+++.++=.+-...+...+..+++|+.+....-.+...|...++.+.-+.+.+.+++..|+.++.+|..+=..+
T Consensus 400 ~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~l 472 (1200)
T KOG0964|consen 400 EKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKEL 472 (1200)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
No 486
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=32.89 E-value=2.9e+02 Score=29.11 Aligned_cols=58 Identities=28% Similarity=0.328 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 102 MRKQRHLDELW---SHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTE 159 (201)
Q Consensus 102 ~RKq~~l~eLe---~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~ 159 (201)
.|=+-|+.++. .+.+.|..+-..++.++..+...-+++...+..|+.++..|++....
T Consensus 202 ErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~~~~~ 262 (916)
T KOG0249|consen 202 ERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRRSSLE 262 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
No 487
>PRK10722 hypothetical protein; Provisional
Probab=32.87 E-value=3e+02 Score=24.94 Aligned_cols=53 Identities=19% Similarity=0.240 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159 108 LDELWSHVVRLRTENHNLIDKLNHV----SESHDRVLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 108 l~eLe~qV~~L~~EN~~L~~el~~L----~~~~~~l~~EN~~Lrael~~Lr~~L~~l 160 (201)
|-.|+..-..|.-.-..=+.+...| -.+++.+..++..|..++....++|..|
T Consensus 146 L~qlwr~~Q~l~l~LaeEr~Ry~rLQq~sD~qlD~lrqq~~~Lq~~L~~t~rKLEnL 202 (247)
T PRK10722 146 LYQLWRDGQALQLALAEERQRYQKLQQSSDSELDALRQQQQRLQYQLELTTRKLENL 202 (247)
T ss_pred HHHHHHHhhHHHHhHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 488
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=32.58 E-value=3.7e+02 Score=24.56 Aligned_cols=76 Identities=17% Similarity=0.291 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 85 RKQRRMISNRESARRSRMRKQRHLD---ELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 85 RR~RR~lsNRESARRSR~RKq~~l~---eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
+.+.++++.|...+.+-.|.+.... .|+.++..++.+...+..+ ..+......+.+....||.+...|+..+.++.
T Consensus 151 ~ekd~~i~~~~~~~e~d~rnq~l~~~i~~l~~~l~~~~~~~~~~~~~-~~~~~~~~e~~~r~~~lr~~~~~l~~el~~aK 229 (264)
T PF07246_consen 151 EEKDQLIKEKTQERENDRRNQILSHEISNLTNELSNLRNDIDKFQER-EDEKILHEELEARESGLRNESKWLEHELSDAK 229 (264)
T ss_pred HHHHHHHHHHhhchhhhhHHHHHHHHHHHhhhhHHHhhchhhhhhhh-hhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHH
No 489
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=32.56 E-value=1.8e+02 Score=23.28 Aligned_cols=57 Identities=23% Similarity=0.281 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 105 QRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 105 q~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
+.|-.+...++..++.....|..++=.+....+-+..-+..|..+=..|+.+|..+.
T Consensus 64 ~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~eilr~~g~~l~~eEe~L~~~le~l~ 120 (141)
T PF13874_consen 64 QKHDLETSARLEEARRRHQELSHRLLRVLRKQEILRNRGYALSPEEEELRKRLEALE 120 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
No 490
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=32.55 E-value=2.3e+02 Score=22.85 Aligned_cols=47 Identities=9% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 043159 123 HNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQLSSPYTNA 169 (201)
Q Consensus 123 ~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~~~~~~~~~ 169 (201)
..|..+++.|.-+...+...-..|+.++.+|+..|.++-.....+.+
T Consensus 73 ~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~~~~~~~~ 119 (119)
T COG1382 73 DELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALGDAANGGG 119 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
No 491
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=32.55 E-value=2.9e+02 Score=25.60 Aligned_cols=52 Identities=15% Similarity=0.226 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159 109 DELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 109 ~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l 160 (201)
+.+-.++++=..+-..|..++..+.++...+..||...+..+..|...|..+
T Consensus 90 ~lml~RL~~EL~~Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l 141 (355)
T PF09766_consen 90 QLMLARLEFELEQRKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSL 141 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
No 492
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=32.45 E-value=2.1e+02 Score=23.51 Aligned_cols=51 Identities=20% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159 110 ELWSHVVRLRTENHNLIDKLN------------HVSESHDRVLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 110 eLe~qV~~L~~EN~~L~~el~------------~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l 160 (201)
....+...|+.|-.+|++|+. .++++++.++.|-..++++...-+..+...
T Consensus 37 ~~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~ 99 (161)
T PF04420_consen 37 KSSKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKS 99 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 493
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=32.43 E-value=2.5e+02 Score=22.15 Aligned_cols=53 Identities=15% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 105 QRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQML 157 (201)
Q Consensus 105 q~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L 157 (201)
++-+.+=..+...|+.+-..--..+..+.++++.|.--|.+|-.++..|...|
T Consensus 18 KKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El 70 (102)
T PF10205_consen 18 KKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEEL 70 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 494
>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=32.43 E-value=1.8e+02 Score=30.62 Aligned_cols=57 Identities=19% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 105 QRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 105 q~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
.++++..+++++.+..++.+|..-...+.+-...+......|+..+...+.+++.++
T Consensus 71 sq~L~~~~~r~n~~~~dd~~l~~l~~ql~q~~r~i~eq~~~lr~sL~l~~~~~~q~~ 127 (835)
T COG3264 71 SQALNQQTERLNALASDDRQLANLLLQLLQSSRTIREQIAVLRGSLLLSRILLQQLG 127 (835)
T ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhc
No 495
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=32.35 E-value=96 Score=24.84 Aligned_cols=37 Identities=14% Similarity=0.205 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 92 SNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDK 128 (201)
Q Consensus 92 sNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~e 128 (201)
+.+...++-+...++.+++|+.++..|+.+.+.+..+
T Consensus 98 Rs~~ke~~Ke~~~~~~l~~L~~~i~~L~~~~~~~~~~ 134 (134)
T PF07047_consen 98 RSARKEAKKEEELQERLEELEERIEELEEQVEKQQER 134 (134)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 496
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=32.29 E-value=1.7e+02 Score=20.02 Aligned_cols=56 Identities=18% Similarity=0.308 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhh
Q 043159 106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQE----NARLREEASDLRQMLTELQ 161 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~E----N~~Lrael~~Lr~~L~~l~ 161 (201)
..+..+-.+...+..+-.....++..+......|... ...++..+..|..++..+.
T Consensus 34 ~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~ 93 (105)
T PF00435_consen 34 EELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQEKLEELNQRWEALC 93 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH
No 497
>PF12737 Mating_C: C-terminal domain of homeodomain 1; InterPro: IPR024441 Mating in fungi is controlled by the loci that determine the mating type of an individual, and only individuals with differing mating types can mate. Basidiomycete fungi have evolved a unique mating system, termed tetrapolar or bifactorial incompatibility, in which mating type is determined by two unlinked loci; compatibility at both loci is required for mating to occur. The multi-allelic tetrapolar mating system is considered to be a novel innovation that could have only evolved once, and is thus unique to the mushroom fungi. This domain is found in the C-terminal of some mating-type proteins.
Probab=32.22 E-value=48 Score=31.88 Aligned_cols=21 Identities=43% Similarity=0.550 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 043159 101 RMRKQRHLDELWSHVVRLRTE 121 (201)
Q Consensus 101 R~RKq~~l~eLe~qV~~L~~E 121 (201)
|.-|++++++|++|+..|+.|
T Consensus 397 ~~AK~reL~eLeAq~~aL~AE 417 (419)
T PF12737_consen 397 REAKRRELEELEAQARALRAE 417 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
No 498
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=32.10 E-value=2.3e+02 Score=21.64 Aligned_cols=47 Identities=15% Similarity=0.133 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 107 HLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDL 153 (201)
Q Consensus 107 ~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~L 153 (201)
.+++|..+|..|...-.++...+..++...+....|=.+=.+++...
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiDN~ 71 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLDAQ 71 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
No 499
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=31.97 E-value=2.4e+02 Score=23.22 Aligned_cols=55 Identities=13% Similarity=0.067 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043159 108 LDELWSHVVRLRT-ENHNLIDKLNHVSES--------HDRVLQENARLREEASDLRQMLTELQL 162 (201)
Q Consensus 108 l~eLe~qV~~L~~-EN~~L~~el~~L~~~--------~~~l~~EN~~Lrael~~Lr~~L~~l~~ 162 (201)
++.|+.+++.|+. +..++..++...+.. ++....+-..|..++..|.+.|...++
T Consensus 12 ~~~L~~EL~~L~~~~r~e~~~~i~~Ar~~GDl~ENaeY~aAk~~~~~~e~rI~~L~~~L~~A~i 75 (157)
T PRK01885 12 YARLKQELDYLWREERPEVTQKVSWAASLGDRSENADYIYGKKRLREIDRRVRFLTKRLENLKV 75 (157)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHcCCcchhhcHHHHHHHHHHHHHHHHHHHHHHccCEE
No 500
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=31.80 E-value=5e+02 Score=25.42 Aligned_cols=78 Identities=13% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 84 ERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 84 eRR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
+++...+.+.-......-..+..-..+++.++..+..+-..+..+...+.+....+..+-...+..+..++..|..+.
T Consensus 354 ekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ik 431 (569)
T PRK04778 354 EKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIK 431 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!