Query 043159
Match_columns 201
No_of_seqs 168 out of 683
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 23:49:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043159.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043159hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dh3_A Transcription factor CR 99.6 2.6E-15 9E-20 103.6 6.2 51 85-135 1-51 (55)
2 2wt7_A Proto-oncogene protein 99.4 1.4E-12 4.8E-17 91.7 9.0 52 84-135 1-52 (63)
3 2dgc_A Protein (GCN4); basic d 99.3 4.5E-12 1.5E-16 89.5 6.7 51 86-136 10-60 (63)
4 1t2k_D Cyclic-AMP-dependent tr 99.3 1.4E-11 5E-16 85.7 8.8 59 85-150 1-59 (61)
5 1jnm_A Proto-oncogene C-JUN; B 99.2 2.7E-11 9.4E-16 84.6 7.4 50 85-134 1-50 (62)
6 1gd2_E Transcription factor PA 99.1 2.7E-10 9.2E-15 82.3 8.3 61 86-146 9-69 (70)
7 1ci6_A Transcription factor AT 99.1 4.5E-10 1.5E-14 79.1 8.0 60 85-151 2-61 (63)
8 1hjb_A Ccaat/enhancer binding 98.7 1.4E-07 4.8E-12 70.5 9.3 51 82-132 12-62 (87)
9 1gu4_A CAAT/enhancer binding p 98.7 1.3E-07 4.5E-12 69.4 8.9 52 83-134 13-64 (78)
10 3a5t_A Transcription factor MA 98.5 5.4E-09 1.8E-13 81.0 -2.4 47 81-127 33-79 (107)
11 2wt7_B Transcription factor MA 98.3 4.9E-06 1.7E-10 62.7 9.8 66 81-160 23-88 (90)
12 2oqq_A Transcription factor HY 96.6 0.0067 2.3E-07 39.7 6.0 39 105-150 2-40 (42)
13 2jee_A YIIU; FTSZ, septum, coi 96.6 0.017 5.7E-07 42.6 9.0 51 110-160 24-74 (81)
14 1skn_P DNA-binding domain of S 96.5 0.0014 4.6E-08 49.5 2.5 33 81-113 58-90 (92)
15 3hnw_A Uncharacterized protein 95.8 0.077 2.6E-06 42.1 9.8 59 103-161 72-130 (138)
16 1deb_A APC protein, adenomatou 95.7 0.044 1.5E-06 37.3 6.8 48 108-155 5-52 (54)
17 2jee_A YIIU; FTSZ, septum, coi 95.6 0.099 3.4E-06 38.5 9.0 56 106-161 6-61 (81)
18 2w6a_A ARF GTPase-activating p 95.0 0.12 4E-06 36.3 7.3 42 107-148 21-62 (63)
19 1go4_E MAD1 (mitotic arrest de 94.4 0.21 7.1E-06 38.0 8.2 28 136-163 70-97 (100)
20 3s9g_A Protein hexim1; cyclin 94.4 0.25 8.5E-06 37.8 8.5 45 110-154 41-92 (104)
21 3a2a_A Voltage-gated hydrogen 93.1 0.27 9.2E-06 34.0 6.1 39 112-150 10-48 (58)
22 3vmx_A Voltage-gated hydrogen 93.1 0.45 1.5E-05 31.9 7.0 39 112-150 3-41 (48)
23 3hnw_A Uncharacterized protein 92.7 1.5 5E-05 34.6 10.8 56 104-159 80-135 (138)
24 3m48_A General control protein 92.0 0.18 6.2E-06 31.4 3.6 27 108-134 2-28 (33)
25 2oxj_A Hybrid alpha/beta pepti 91.8 0.26 9E-06 30.8 4.2 27 107-133 2-28 (34)
26 3a7p_A Autophagy protein 16; c 91.6 4.7 0.00016 32.7 12.6 75 87-161 70-145 (152)
27 3oja_B Anopheles plasmodium-re 91.6 1.8 6.2E-05 39.4 11.5 20 142-161 559-578 (597)
28 3he5_A Synzip1; heterodimeric 90.8 1.1 3.9E-05 29.4 6.8 36 107-142 4-39 (49)
29 2c9l_Y EB1, zebra, BZLF1 trans 90.7 1.6 5.3E-05 30.3 7.7 24 89-112 5-28 (63)
30 2dfs_A Myosin-5A; myosin-V, in 90.7 2.7 9.2E-05 42.8 12.7 59 102-160 987-1049(1080)
31 2eqb_B RAB guanine nucleotide 90.5 2.1 7.3E-05 32.3 9.1 15 139-153 45-59 (97)
32 2w83_C C-JUN-amino-terminal ki 90.4 2.6 8.8E-05 30.7 9.0 53 109-161 5-64 (77)
33 1kd8_B GABH BLL, GCN4 acid bas 90.1 0.65 2.2E-05 29.3 4.9 28 107-134 2-29 (36)
34 3cve_A Homer protein homolog 1 89.9 2.2 7.4E-05 30.6 8.2 43 110-152 4-46 (72)
35 3c3f_A Alpha/beta peptide with 89.5 0.56 1.9E-05 29.3 4.2 27 107-133 2-28 (34)
36 2kz5_A Transcription factor NF 89.3 0.027 9.1E-07 42.4 -2.3 26 81-106 62-87 (91)
37 3cvf_A Homer-3, homer protein 89.0 1.2 4.1E-05 32.5 6.4 44 108-151 8-51 (79)
38 3s9g_A Protein hexim1; cyclin 89.0 2.7 9.2E-05 32.1 8.5 30 105-134 64-93 (104)
39 2xdj_A Uncharacterized protein 88.6 3.1 0.00011 30.3 8.5 43 108-150 22-64 (83)
40 3c3g_A Alpha/beta peptide with 88.4 0.75 2.6E-05 28.5 4.2 26 108-133 2-27 (33)
41 1p9i_A Cortexillin I/GCN4 hybr 88.2 0.7 2.4E-05 27.8 3.9 23 135-157 7-29 (31)
42 1gd2_E Transcription factor PA 88.2 1.2 4.1E-05 31.6 5.9 36 125-160 34-69 (70)
43 1ci6_A Transcription factor AT 87.8 1.4 4.9E-05 30.2 5.9 34 128-161 24-57 (63)
44 2bni_A General control protein 87.6 0.74 2.5E-05 28.8 3.8 28 107-134 2-29 (34)
45 1nkp_A C-MYC, MYC proto-oncoge 87.5 2.1 7.3E-05 31.1 7.0 18 80-97 10-27 (88)
46 3efg_A Protein SLYX homolog; x 87.4 1.9 6.3E-05 31.0 6.6 50 106-162 14-63 (78)
47 1kd8_A GABH AIV, GCN4 acid bas 87.3 0.79 2.7E-05 29.0 3.9 28 107-134 2-29 (36)
48 3mq7_A Bone marrow stromal ant 87.2 3.7 0.00013 32.1 8.5 52 110-161 61-112 (121)
49 1uo4_A General control protein 87.0 0.83 2.8E-05 28.5 3.8 28 107-134 2-29 (34)
50 3s4r_A Vimentin; alpha-helix, 86.9 5.7 0.00019 29.2 9.1 33 128-160 57-89 (93)
51 2dgc_A Protein (GCN4); basic d 86.9 0.96 3.3E-05 31.2 4.6 32 127-158 30-61 (63)
52 3a7p_A Autophagy protein 16; c 86.5 10 0.00035 30.7 11.1 65 96-160 72-136 (152)
53 3o0z_A RHO-associated protein 86.5 12 0.00041 30.7 11.7 62 87-155 71-132 (168)
54 1jnm_A Proto-oncogene C-JUN; B 86.4 1.7 5.7E-05 29.5 5.6 35 127-161 22-56 (62)
55 2hy6_A General control protein 86.4 0.94 3.2E-05 28.3 3.8 28 107-134 2-29 (34)
56 1gu4_A CAAT/enhancer binding p 86.2 1.8 6.1E-05 31.3 5.9 28 134-161 43-70 (78)
57 2oxj_A Hybrid alpha/beta pepti 86.2 1.3 4.5E-05 27.6 4.4 30 129-158 3-32 (34)
58 2wq1_A General control protein 85.9 1.3 4.3E-05 27.5 4.2 27 108-134 2-28 (33)
59 1t6f_A Geminin; coiled-coil, c 85.8 1.4 4.7E-05 27.9 4.4 31 118-148 5-35 (37)
60 2yy0_A C-MYC-binding protein; 85.8 1.7 5.9E-05 29.2 5.3 31 113-150 19-49 (53)
61 3m91_A Proteasome-associated A 85.7 4.3 0.00015 27.2 7.2 23 109-131 12-34 (51)
62 1t2k_D Cyclic-AMP-dependent tr 85.7 6.2 0.00021 26.5 8.3 34 128-161 23-56 (61)
63 3iv1_A Tumor susceptibility ge 85.6 8.4 0.00029 27.9 10.1 61 101-161 13-73 (78)
64 1go4_E MAD1 (mitotic arrest de 85.5 2.5 8.6E-05 32.0 6.6 41 127-167 12-52 (100)
65 2v71_A Nuclear distribution pr 85.2 5.7 0.0002 33.1 9.3 52 108-159 90-141 (189)
66 3m9b_A Proteasome-associated A 85.0 1.3 4.3E-05 38.6 5.4 27 106-132 54-80 (251)
67 2zxx_A Geminin; coiled-coil, c 84.9 6.8 0.00023 28.5 8.5 42 117-158 31-72 (79)
68 3oja_B Anopheles plasmodium-re 84.9 11 0.00039 34.1 12.0 42 117-158 520-561 (597)
69 2yy0_A C-MYC-binding protein; 84.8 1.9 6.4E-05 29.0 5.1 24 137-160 22-45 (53)
70 2w83_C C-JUN-amino-terminal ki 84.8 1.7 5.9E-05 31.6 5.2 42 109-150 33-74 (77)
71 1dip_A Delta-sleep-inducing pe 84.6 0.79 2.7E-05 33.4 3.3 31 120-150 15-45 (78)
72 3m48_A General control protein 84.1 1.2 4.2E-05 27.6 3.5 29 130-158 3-31 (33)
73 3efg_A Protein SLYX homolog; x 83.6 3.7 0.00013 29.4 6.6 45 110-161 11-55 (78)
74 4h22_A Leucine-rich repeat fli 82.7 6 0.0002 30.2 7.7 12 82-93 7-18 (103)
75 1i84_S Smooth muscle myosin he 82.6 11 0.00038 38.3 11.9 26 135-160 914-939 (1184)
76 2lw1_A ABC transporter ATP-bin 81.8 8.7 0.0003 27.5 8.1 58 104-161 20-83 (89)
77 1hjb_A Ccaat/enhancer binding 81.7 13 0.00044 27.2 9.0 21 138-158 47-67 (87)
78 2v71_A Nuclear distribution pr 81.6 22 0.00074 29.6 12.9 45 107-151 110-154 (189)
79 3jsv_C NF-kappa-B essential mo 81.4 15 0.00051 27.6 10.2 71 91-161 8-81 (94)
80 2v66_B Nuclear distribution pr 81.4 13 0.00045 28.5 9.3 53 107-159 36-88 (111)
81 1uii_A Geminin; human, DNA rep 81.3 13 0.00046 27.2 8.9 37 117-153 43-79 (83)
82 3c3g_A Alpha/beta peptide with 81.2 2.9 9.8E-05 25.9 4.4 29 130-158 3-31 (33)
83 2oqq_A Transcription factor HY 81.0 2.9 9.8E-05 27.2 4.6 25 105-129 16-40 (42)
84 2wt7_B Transcription factor MA 80.9 15 0.00051 27.2 10.1 31 108-138 57-87 (90)
85 3c3f_A Alpha/beta peptide with 80.9 3 0.0001 26.0 4.4 30 129-158 3-32 (34)
86 4etp_A Kinesin-like protein KA 80.6 6.8 0.00023 35.4 8.7 35 106-140 10-44 (403)
87 2dfs_A Myosin-5A; myosin-V, in 80.4 21 0.00071 36.4 12.9 56 106-161 984-1043(1080)
88 3swf_A CGMP-gated cation chann 80.3 8.2 0.00028 27.8 7.3 50 109-161 3-52 (74)
89 1dh3_A Transcription factor CR 80.2 1.7 5.7E-05 29.2 3.4 30 128-157 23-52 (55)
90 3m91_A Proteasome-associated A 80.0 9.5 0.00033 25.5 7.1 29 113-141 9-37 (51)
91 3swy_A Cyclic nucleotide-gated 79.6 9.7 0.00033 25.0 6.9 44 110-156 2-45 (46)
92 3mq7_A Bone marrow stromal ant 79.5 9.5 0.00032 29.8 8.0 39 114-152 72-110 (121)
93 1gk6_A Vimentin; intermediate 79.4 9.1 0.00031 25.8 7.0 50 109-158 3-52 (59)
94 2wuj_A Septum site-determining 79.1 1.8 6.2E-05 29.1 3.4 25 132-156 32-56 (57)
95 3ra3_A P1C; coiled coil domain 79.1 2.3 7.8E-05 25.1 3.3 23 138-160 4-26 (28)
96 1nkp_B MAX protein, MYC proto- 79.0 2.8 9.4E-05 29.7 4.5 26 135-160 55-80 (83)
97 3i00_A HIP-I, huntingtin-inter 78.6 20 0.00067 27.6 9.6 48 101-155 35-82 (120)
98 1fmh_A General control protein 78.6 4.1 0.00014 24.8 4.4 26 108-133 3-28 (33)
99 4h22_A Leucine-rich repeat fli 78.5 15 0.00053 27.9 8.7 18 140-157 64-81 (103)
100 2wt7_A Proto-oncogene protein 78.5 13 0.00044 25.1 9.4 34 128-161 24-57 (63)
101 3oja_A Leucine-rich immune mol 78.3 32 0.0011 30.5 12.3 53 108-160 423-475 (487)
102 2r2v_A GCN4 leucine zipper; co 78.3 3.6 0.00012 25.6 4.2 28 107-134 2-29 (34)
103 3oja_A Leucine-rich immune mol 78.3 18 0.00062 32.2 10.7 42 120-161 428-469 (487)
104 1nlw_A MAD protein, MAX dimeri 78.2 4.6 0.00016 28.8 5.5 18 106-123 47-64 (80)
105 2v4h_A NF-kappa-B essential mo 78.2 21 0.00072 27.4 11.9 65 96-160 35-109 (110)
106 1wlq_A Geminin; coiled-coil; 2 77.7 16 0.00056 26.8 8.4 36 117-152 35-70 (83)
107 3u06_A Protein claret segregat 77.6 7.5 0.00026 35.4 8.0 24 111-134 15-38 (412)
108 3a7o_A Autophagy protein 16; c 77.4 11 0.00039 27.0 7.3 48 108-155 27-74 (75)
109 3m9b_A Proteasome-associated A 76.4 3.3 0.00011 36.0 5.0 43 113-162 54-96 (251)
110 2j5u_A MREC protein; bacterial 76.3 1.3 4.4E-05 37.8 2.4 34 116-149 22-58 (255)
111 2v66_B Nuclear distribution pr 76.2 24 0.00082 27.0 12.6 47 105-151 55-101 (111)
112 3nmd_A CGMP dependent protein 76.2 7.3 0.00025 27.9 6.0 27 104-130 38-64 (72)
113 2oa5_A Hypothetical protein BQ 75.6 12 0.00042 28.8 7.5 26 106-131 8-33 (110)
114 1joc_A EEA1, early endosomal a 75.5 22 0.00075 27.0 9.1 45 106-150 11-55 (125)
115 2xv5_A Lamin-A/C; structural p 74.8 20 0.00068 25.4 8.5 50 109-158 8-57 (74)
116 4etp_A Kinesin-like protein KA 74.7 11 0.00039 33.9 8.4 55 107-161 4-58 (403)
117 1kd8_B GABH BLL, GCN4 acid bas 74.3 6.8 0.00023 24.6 4.7 30 130-159 4-33 (36)
118 1p9i_A Cortexillin I/GCN4 hybr 73.8 4.9 0.00017 24.1 3.8 26 109-134 2-27 (31)
119 2wvr_A Geminin; DNA replicatio 73.8 24 0.00082 29.9 9.5 47 116-162 111-160 (209)
120 1wt6_A Myotonin-protein kinase 73.8 20 0.00068 26.2 7.9 42 114-162 32-73 (81)
121 2bni_A General control protein 73.7 3.9 0.00013 25.5 3.5 29 130-158 4-32 (34)
122 4emc_A Monopolin complex subun 73.6 7 0.00024 32.7 6.1 14 114-127 21-34 (190)
123 3he5_A Synzip1; heterodimeric 72.6 17 0.00059 23.7 7.4 44 114-157 4-47 (49)
124 2ocy_A RAB guanine nucleotide 72.6 17 0.00058 29.3 8.0 29 133-161 107-135 (154)
125 1jcd_A Major outer membrane li 72.5 19 0.00064 24.1 7.7 33 107-139 5-37 (52)
126 1a93_B MAX protein, coiled coi 71.9 6.6 0.00023 24.4 4.2 27 127-153 7-33 (34)
127 1uo4_A General control protein 71.9 5.2 0.00018 24.9 3.7 28 130-157 4-31 (34)
128 1dip_A Delta-sleep-inducing pe 71.9 4.3 0.00015 29.5 3.9 21 106-126 22-42 (78)
129 2ve7_C Kinetochore protein NUF 69.8 2.5 8.5E-05 36.1 2.7 81 81-161 116-203 (250)
130 3na7_A HP0958; flagellar bioge 69.8 31 0.0011 28.8 9.5 52 106-157 32-83 (256)
131 3ra3_A P1C; coiled coil domain 69.5 2.9 0.0001 24.6 2.1 24 116-139 3-26 (28)
132 1ic2_A Tropomyosin alpha chain 69.5 24 0.00081 24.8 7.4 55 105-159 19-73 (81)
133 3bas_A Myosin heavy chain, str 69.5 29 0.00098 25.0 12.8 55 104-158 33-87 (89)
134 3u1c_A Tropomyosin alpha-1 cha 69.4 31 0.0011 25.3 9.4 13 148-160 86-98 (101)
135 1nkp_B MAX protein, MYC proto- 69.3 8 0.00027 27.2 4.9 16 138-153 65-80 (83)
136 1nkp_A C-MYC, MYC proto-oncoge 68.7 16 0.00054 26.3 6.5 15 139-153 71-85 (88)
137 3ra3_B P2F; coiled coil domain 68.5 5.9 0.0002 23.3 3.2 22 139-160 5-26 (28)
138 3q8t_A Beclin-1; autophagy, AT 67.9 33 0.0011 25.1 8.7 21 115-135 27-47 (96)
139 3e98_A GAF domain of unknown f 67.8 16 0.00056 30.9 7.4 43 111-157 70-112 (252)
140 2wuj_A Septum site-determining 67.6 5.8 0.0002 26.6 3.6 30 106-135 27-56 (57)
141 1am9_A Srebp-1A, protein (ster 67.4 9.3 0.00032 27.1 4.9 70 91-161 8-77 (82)
142 1am9_A Srebp-1A, protein (ster 67.2 21 0.00072 25.2 6.8 50 81-130 11-74 (82)
143 3vkg_A Dynein heavy chain, cyt 66.9 54 0.0019 37.5 12.9 23 138-160 2081-2103(3245)
144 2hy6_A General control protein 66.8 10 0.00034 23.6 4.2 29 130-158 4-32 (34)
145 3u59_A Tropomyosin beta chain; 66.5 35 0.0012 24.9 9.0 53 105-157 22-74 (101)
146 3he5_B Synzip2; heterodimeric 65.1 27 0.00091 23.0 6.7 38 123-160 6-43 (52)
147 1x8y_A Lamin A/C; structural p 64.7 36 0.0012 24.3 10.3 55 104-158 26-80 (86)
148 2j5u_A MREC protein; bacterial 64.6 4.2 0.00014 34.6 3.0 16 125-140 24-39 (255)
149 2oto_A M protein; helical coil 64.3 48 0.0017 25.7 9.5 32 108-139 52-83 (155)
150 1kd8_A GABH AIV, GCN4 acid bas 63.9 10 0.00036 23.8 4.0 29 131-159 5-33 (36)
151 1fmh_A General control protein 63.3 13 0.00046 22.5 4.2 26 130-155 4-29 (33)
152 1gk7_A Vimentin; intermediate 63.2 11 0.00039 23.7 4.2 25 127-151 13-37 (39)
153 1nlw_A MAD protein, MAX dimeri 62.7 12 0.00042 26.6 4.8 27 132-158 52-78 (80)
154 4emc_A Monopolin complex subun 62.2 25 0.00087 29.3 7.3 31 108-138 22-52 (190)
155 2xdj_A Uncharacterized protein 61.7 42 0.0014 24.2 9.5 30 105-134 26-55 (83)
156 3w03_C DNA repair protein XRCC 61.2 14 0.00046 30.7 5.4 25 107-131 153-177 (184)
157 3i00_A HIP-I, huntingtin-inter 60.6 52 0.0018 25.2 8.4 15 147-161 67-81 (120)
158 3u06_A Protein claret segregat 60.1 42 0.0014 30.4 9.0 31 109-139 6-36 (412)
159 3u1c_A Tropomyosin alpha-1 cha 59.9 48 0.0017 24.3 12.6 34 108-141 25-58 (101)
160 2wq1_A General control protein 59.3 18 0.00063 22.3 4.4 27 131-157 4-30 (33)
161 3tnu_B Keratin, type II cytosk 57.7 19 0.00063 27.4 5.4 29 107-135 44-72 (129)
162 2oto_A M protein; helical coil 57.2 65 0.0022 24.9 8.8 28 130-157 53-80 (155)
163 1wle_A Seryl-tRNA synthetase; 57.2 1.2E+02 0.0042 28.1 12.1 21 139-159 121-141 (501)
164 2ve7_C Kinetochore protein NUF 57.2 11 0.00036 32.2 4.2 38 124-161 145-182 (250)
165 1ik9_A DNA repair protein XRCC 56.7 36 0.0012 28.4 7.4 23 108-130 141-163 (213)
166 1zme_C Proline utilization tra 55.6 11 0.00038 24.8 3.4 25 105-129 43-67 (70)
167 2lz1_A Nuclear factor erythroi 55.5 0.18 6.3E-06 37.8 -6.1 24 82-105 63-86 (90)
168 3bas_A Myosin heavy chain, str 55.4 54 0.0019 23.5 9.5 55 107-161 29-83 (89)
169 3cve_A Homer protein homolog 1 55.0 54 0.0018 23.3 8.4 49 106-161 21-69 (72)
170 3ra3_B P2F; coiled coil domain 55.0 11 0.00037 22.1 2.7 19 117-135 4-22 (28)
171 1wle_A Seryl-tRNA synthetase; 54.9 61 0.0021 30.2 9.3 20 141-160 130-149 (501)
172 2e7s_A RAB guanine nucleotide 54.6 47 0.0016 26.2 7.3 20 140-159 102-121 (135)
173 3q0x_A Centriole protein; cent 53.5 59 0.002 27.6 8.3 48 83-136 161-208 (228)
174 3o0z_A RHO-associated protein 53.3 91 0.0031 25.4 9.2 25 111-135 39-63 (168)
175 3tnu_B Keratin, type II cytosk 53.1 71 0.0024 24.1 9.6 50 107-156 76-125 (129)
176 3trt_A Vimentin; cytoskeleton, 53.0 51 0.0018 22.5 8.9 35 108-142 37-71 (77)
177 2r2v_A GCN4 leucine zipper; co 52.9 27 0.00091 21.7 4.4 29 130-158 4-32 (34)
178 2fxo_A Myosin heavy chain, car 52.6 73 0.0025 24.1 11.4 52 108-159 64-115 (129)
179 3vkg_A Dynein heavy chain, cyt 52.3 50 0.0017 37.7 9.5 48 114-161 2029-2076(3245)
180 3ol1_A Vimentin; structural ge 52.1 73 0.0025 23.9 9.5 36 126-161 68-103 (119)
181 3qne_A Seryl-tRNA synthetase, 51.9 1.4E+02 0.0048 27.8 11.3 21 139-159 76-96 (485)
182 3tnu_A Keratin, type I cytoske 51.8 75 0.0026 24.0 10.1 52 106-157 77-128 (131)
183 3nmd_A CGMP dependent protein 51.7 42 0.0014 23.9 6.0 31 124-154 37-67 (72)
184 3cvf_A Homer-3, homer protein 51.6 65 0.0022 23.2 9.7 50 106-162 27-76 (79)
185 3oa7_A Head morphogenesis prot 51.5 61 0.0021 27.3 7.9 40 115-154 32-71 (206)
186 3q8t_A Beclin-1; autophagy, AT 51.4 68 0.0023 23.4 11.4 52 108-159 41-92 (96)
187 3w03_C DNA repair protein XRCC 50.6 57 0.002 26.9 7.5 27 106-132 145-171 (184)
188 1wt6_A Myotonin-protein kinase 50.5 70 0.0024 23.3 9.5 36 105-140 37-72 (81)
189 3m0d_C TNF receptor-associated 49.8 58 0.002 22.1 9.7 58 104-161 4-61 (65)
190 3thf_A Protein shroom; coiled- 49.4 57 0.0019 27.2 7.3 47 101-158 14-60 (190)
191 1ses_A Seryl-tRNA synthetase; 47.9 1.6E+02 0.0053 26.5 12.1 26 107-132 29-54 (421)
192 1jcd_A Major outer membrane li 47.8 59 0.002 21.6 7.9 44 114-157 5-48 (52)
193 2dq0_A Seryl-tRNA synthetase; 47.7 1.7E+02 0.0056 26.8 12.1 20 140-159 75-94 (455)
194 1hlo_A Protein (transcription 47.4 53 0.0018 22.8 6.0 51 105-155 28-78 (80)
195 2zvf_A Alanyl-tRNA synthetase; 47.2 17 0.00057 28.1 3.6 25 125-149 30-54 (171)
196 3tnu_A Keratin, type I cytoske 47.1 90 0.0031 23.6 9.5 10 140-149 90-99 (131)
197 2w6a_A ARF GTPase-activating p 46.5 71 0.0024 22.2 6.9 38 124-161 17-54 (63)
198 3bbp_D GRIP and coiled-coil do 46.2 28 0.00094 24.9 4.2 15 139-153 48-62 (71)
199 3s4r_A Vimentin; alpha-helix, 46.0 63 0.0022 23.5 6.4 9 146-154 82-90 (93)
200 2v4h_A NF-kappa-B essential mo 46.0 99 0.0034 23.7 12.6 68 83-150 36-106 (110)
201 3mq9_A Bone marrow stromal ant 45.8 1.6E+02 0.0053 25.9 10.8 30 131-160 440-469 (471)
202 3q0x_A Centriole protein; cent 45.7 98 0.0034 26.2 8.4 17 114-130 172-188 (228)
203 3iox_A AGI/II, PA; alpha helix 45.5 1.1E+02 0.0037 29.0 9.4 31 108-138 36-66 (497)
204 1lwu_C Fibrinogen gamma chain; 45.4 60 0.002 28.8 7.3 20 111-130 17-36 (323)
205 1gk4_A Vimentin; intermediate 44.8 79 0.0027 22.3 12.0 58 101-158 21-78 (84)
206 1zxa_A CGMP-dependent protein 44.8 47 0.0016 23.3 5.3 27 104-130 23-49 (67)
207 3mov_A Lamin-B1; LMNB1, B-type 44.7 89 0.0031 22.8 10.3 53 105-157 36-88 (95)
208 3lay_A Zinc resistance-associa 44.5 66 0.0023 26.0 6.9 20 135-154 114-133 (175)
209 3trt_A Vimentin; cytoskeleton, 44.2 73 0.0025 21.7 7.3 13 148-160 56-68 (77)
210 2ve7_A Kinetochore protein HEC 42.7 28 0.00097 30.3 4.8 33 112-144 184-216 (315)
211 4gkw_A Spindle assembly abnorm 42.5 1.3E+02 0.0045 24.1 8.2 25 130-154 136-160 (167)
212 4dk0_A Putative MACA; alpha-ha 42.0 1.5E+02 0.0053 24.8 11.8 34 134-167 129-162 (369)
213 2ve7_A Kinetochore protein HEC 41.6 64 0.0022 28.0 6.9 30 105-134 184-213 (315)
214 4ati_A MITF, microphthalmia-as 41.5 39 0.0013 25.5 4.8 20 136-155 93-112 (118)
215 2fic_A Bridging integrator 1; 41.3 1.4E+02 0.0047 24.1 8.8 11 143-153 199-209 (251)
216 3a5t_A Transcription factor MA 40.9 0.98 3.3E-05 34.6 -4.3 40 122-161 60-99 (107)
217 2dq0_A Seryl-tRNA synthetase; 40.7 1E+02 0.0036 28.1 8.4 30 132-161 74-103 (455)
218 3u59_A Tropomyosin beta chain; 40.6 1E+02 0.0035 22.3 12.6 60 101-160 39-98 (101)
219 2er8_A Regulatory protein Leu3 40.1 16 0.00054 24.3 2.2 21 105-125 48-68 (72)
220 1deb_A APC protein, adenomatou 40.0 84 0.0029 21.2 7.6 44 118-161 8-51 (54)
221 1hlo_A Protein (transcription 39.8 20 0.00069 25.0 2.8 17 81-97 17-33 (80)
222 4ath_A MITF, microphthalmia-as 39.8 1.1E+02 0.0036 22.3 6.8 25 108-132 51-75 (83)
223 2fxo_A Myosin heavy chain, car 39.7 1.2E+02 0.0041 22.9 13.2 58 104-161 67-124 (129)
224 1fmh_B General control protein 39.7 55 0.0019 19.7 4.2 24 133-156 7-30 (33)
225 1uix_A RHO-associated kinase; 39.5 99 0.0034 21.9 8.2 30 111-140 2-31 (71)
226 3ol1_A Vimentin; structural ge 39.4 1.2E+02 0.0041 22.7 9.4 39 116-154 65-103 (119)
227 1g6u_A Domain swapped dimer; d 39.3 77 0.0026 20.5 5.9 27 135-161 21-47 (48)
228 2xv5_A Lamin-A/C; structural p 38.9 1E+02 0.0034 21.7 7.7 43 101-143 7-49 (74)
229 2q6q_A Spindle POLE BODY compo 38.7 1E+02 0.0036 21.9 8.9 54 109-162 6-59 (74)
230 3mud_A DNA repair protein XRCC 38.6 1.3E+02 0.0045 24.6 7.9 19 112-130 134-152 (175)
231 3csx_A Putative uncharacterize 38.4 1.1E+02 0.0038 22.2 7.3 11 150-160 66-76 (81)
232 4ath_A MITF, microphthalmia-as 38.3 79 0.0027 23.0 5.8 22 135-156 57-78 (83)
233 3qne_A Seryl-tRNA synthetase, 38.0 1.4E+02 0.0047 27.9 8.9 57 105-161 46-105 (485)
234 2avr_X Adhesion A; antiparalle 37.7 1.4E+02 0.0048 23.1 9.7 54 108-161 11-64 (119)
235 1ik9_A DNA repair protein XRCC 37.1 1.8E+02 0.0061 24.1 9.1 34 110-143 136-169 (213)
236 1s1c_X RHO-associated, coiled- 36.9 1.1E+02 0.0038 21.6 7.5 31 110-140 3-33 (71)
237 3he4_A Synzip6; heterodimeric 36.9 55 0.0019 21.8 4.3 32 109-140 20-51 (56)
238 3v86_A De novo design helix; c 36.9 58 0.002 18.8 3.9 20 111-130 5-24 (27)
239 4b4t_K 26S protease regulatory 36.8 59 0.002 29.5 6.1 20 142-161 71-90 (428)
240 2p22_A Suppressor protein STP2 36.1 1.7E+02 0.006 23.7 8.4 56 100-155 28-84 (174)
241 3qh9_A Liprin-beta-2; coiled-c 36.1 1.2E+02 0.0042 22.0 8.9 28 106-133 26-53 (81)
242 2js5_A Uncharacterized protein 35.3 1.2E+02 0.004 21.5 8.3 54 108-161 5-65 (71)
243 2w6b_A RHO guanine nucleotide 35.3 1.1E+02 0.0036 20.9 6.6 21 110-130 14-34 (56)
244 3a2a_A Voltage-gated hydrogen 35.2 1.1E+02 0.0036 21.0 6.0 34 125-158 16-49 (58)
245 1joc_A EEA1, early endosomal a 35.1 1.3E+02 0.0044 22.6 6.9 38 110-147 8-45 (125)
246 1f5n_A Interferon-induced guan 34.6 3E+02 0.01 26.0 12.0 15 148-162 567-581 (592)
247 3ghg_A Fibrinogen alpha chain; 34.0 3.2E+02 0.011 26.2 11.0 38 124-161 114-151 (562)
248 4b4t_K 26S protease regulatory 33.9 86 0.0029 28.4 6.6 38 110-154 53-90 (428)
249 3htk_A Structural maintenance 33.5 97 0.0033 20.0 8.9 32 125-156 24-55 (60)
250 3viq_B Mating-type switching p 32.7 1.4E+02 0.0049 21.7 9.0 56 106-161 8-68 (85)
251 2k48_A Nucleoprotein; viral pr 32.0 1.7E+02 0.0058 22.3 9.5 25 137-161 78-102 (107)
252 2zvf_A Alanyl-tRNA synthetase; 31.6 1.6E+02 0.0055 22.3 7.1 26 110-135 29-54 (171)
253 1f5n_A Interferon-induced guan 31.3 3.4E+02 0.012 25.6 11.0 19 139-157 565-583 (592)
254 3fx0_A NF-kappa-B essential mo 31.2 22 0.00074 26.8 1.8 39 103-141 35-76 (96)
255 2i1j_A Moesin; FERM, coiled-co 31.2 49 0.0017 31.1 4.7 24 108-131 337-360 (575)
256 1fxk_C Protein (prefoldin); ar 31.1 1.4E+02 0.0048 22.0 6.5 26 110-135 99-124 (133)
257 3iox_A AGI/II, PA; alpha helix 31.1 1.7E+02 0.0058 27.7 8.2 35 108-142 29-63 (497)
258 2dq3_A Seryl-tRNA synthetase; 30.8 1.3E+02 0.0044 27.1 7.2 15 145-159 86-100 (425)
259 3gp4_A Transcriptional regulat 30.7 1.7E+02 0.0058 22.2 7.0 24 107-130 89-112 (142)
260 3ghg_A Fibrinogen alpha chain; 30.5 2.8E+02 0.0096 26.6 9.6 50 101-150 105-154 (562)
261 1tu3_F RAB GTPase binding effe 30.1 27 0.00093 25.3 2.1 34 145-178 44-77 (79)
262 3lss_A Seryl-tRNA synthetase; 30.0 2E+02 0.0067 26.8 8.5 13 146-158 123-135 (484)
263 3mtu_A Tropomyosin alpha-1 cha 30.0 1.1E+02 0.0038 21.3 5.3 39 106-144 16-54 (75)
264 3q4f_C DNA repair protein XRCC 29.7 49 0.0017 27.5 3.9 23 106-128 161-183 (186)
265 1deq_A Fibrinogen (alpha chain 29.5 2.5E+02 0.0085 25.8 8.8 38 124-161 117-154 (390)
266 1a93_B MAX protein, coiled coi 29.5 92 0.0031 19.2 4.2 18 112-129 13-30 (34)
267 1m1j_B Fibrinogen beta chain; 29.5 2.4E+02 0.0083 26.2 9.0 57 105-161 127-188 (464)
268 4dzo_A Mitotic spindle assembl 29.4 1.2E+02 0.0042 23.0 6.0 38 107-161 5-42 (123)
269 2l5g_A GPS2 protein, G protein 29.3 66 0.0023 20.3 3.5 20 106-125 15-34 (38)
270 1x8y_A Lamin A/C; structural p 29.2 1.5E+02 0.0052 20.9 6.7 27 106-132 35-61 (86)
271 2ocy_A RAB guanine nucleotide 27.4 2.4E+02 0.0081 22.5 11.8 45 111-155 49-93 (154)
272 2oa5_A Hypothetical protein BQ 27.3 36 0.0012 26.1 2.5 20 131-150 12-31 (110)
273 3lss_A Seryl-tRNA synthetase; 27.2 3.1E+02 0.011 25.4 9.3 19 143-161 113-131 (484)
274 3he4_A Synzip6; heterodimeric 27.0 35 0.0012 22.8 2.1 26 136-161 26-51 (56)
275 2p4v_A Transcription elongatio 27.0 2.2E+02 0.0076 22.1 9.1 56 108-163 11-75 (158)
276 3mq9_A Bone marrow stromal ant 26.6 3.2E+02 0.011 23.8 13.4 15 145-159 447-461 (471)
277 3vmx_A Voltage-gated hydrogen 26.5 1.4E+02 0.0048 19.7 7.0 35 124-158 8-42 (48)
278 1avy_A Fibritin, gpwac M; bact 26.3 1.5E+02 0.0053 21.1 5.4 36 127-162 8-43 (74)
279 1zxa_A CGMP-dependent protein 26.2 1.1E+02 0.0037 21.4 4.6 22 136-157 34-55 (67)
280 3fpp_A Macrolide-specific effl 26.2 1.9E+02 0.0066 23.9 7.1 6 162-167 156-161 (341)
281 4b4t_M 26S protease regulatory 25.9 70 0.0024 29.1 4.6 26 136-161 48-73 (434)
282 1ses_A Seryl-tRNA synthetase; 25.6 2E+02 0.007 25.8 7.6 19 142-160 79-97 (421)
283 1ez3_A Syntaxin-1A; three heli 25.4 1.6E+02 0.0054 21.2 5.8 13 147-159 94-106 (127)
284 2wvr_A Geminin; DNA replicatio 25.4 3E+02 0.01 23.1 9.3 20 108-127 124-143 (209)
285 2yko_A LINE-1 ORF1P; RNA-bindi 25.1 1.5E+02 0.0051 25.3 6.2 54 109-162 2-55 (233)
286 1nfn_A Apolipoprotein E3; lipi 25.0 1.8E+02 0.0063 23.3 6.6 57 105-161 105-163 (191)
287 4dyl_A Tyrosine-protein kinase 24.8 3.6E+02 0.012 23.7 13.3 77 89-165 313-397 (406)
288 3ljm_A Coil Ser L9C; de novo d 24.6 1.2E+02 0.004 18.1 4.4 23 109-131 4-26 (31)
289 2eqb_B RAB guanine nucleotide 24.2 2.2E+02 0.0076 21.1 11.3 18 135-152 77-94 (97)
290 3he5_B Synzip2; heterodimeric 24.1 1.6E+02 0.0053 19.3 6.8 14 114-127 11-24 (52)
291 3jsv_C NF-kappa-B essential mo 23.0 1.8E+02 0.0061 21.7 5.5 50 113-162 40-89 (94)
292 3r2p_A Apolipoprotein A-I; amp 22.9 1.9E+02 0.0063 22.8 6.1 18 103-120 86-103 (185)
293 3mud_A DNA repair protein XRCC 22.6 2E+02 0.0069 23.5 6.3 34 97-130 133-166 (175)
294 2wg5_A General control protein 22.4 82 0.0028 23.3 3.6 25 138-162 11-35 (109)
295 2z5i_A TM, general control pro 21.9 1.7E+02 0.0059 19.1 6.5 20 97-116 10-29 (52)
296 4e61_A Protein BIM1; EB1-like 21.4 2.7E+02 0.0091 21.0 9.0 34 111-144 9-42 (106)
297 4fi5_A Nucleoprotein; structur 21.4 2.8E+02 0.0096 21.2 9.0 28 136-163 64-91 (113)
298 3rrk_A V-type ATPase 116 kDa s 21.2 3.7E+02 0.013 22.7 8.9 28 108-135 228-255 (357)
299 2akf_A Coronin-1A; coiled coil 21.2 1.5E+02 0.005 17.9 4.8 23 111-133 4-26 (32)
300 2aze_B Transcription factor E2 21.1 1.6E+02 0.0054 21.9 5.0 33 108-140 8-40 (106)
301 2aze_A Transcription factor DP 20.8 2.2E+02 0.0077 22.8 6.1 37 88-124 8-44 (155)
302 2q6q_A Spindle POLE BODY compo 20.7 2.3E+02 0.008 20.1 7.8 49 113-161 17-65 (74)
303 3uun_A Dystrophin; triple heli 20.6 2.1E+02 0.0072 19.5 8.8 15 125-139 83-97 (119)
304 3swk_A Vimentin; cytoskeleton, 20.1 2.4E+02 0.0082 20.0 8.4 24 109-132 3-26 (86)
305 3lay_A Zinc resistance-associa 20.1 3.4E+02 0.012 21.8 9.2 18 145-162 128-145 (175)
306 2aze_B Transcription factor E2 20.1 2E+02 0.0068 21.3 5.4 27 135-161 14-40 (106)
No 1
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=99.57 E-value=2.6e-15 Score=103.62 Aligned_cols=51 Identities=31% Similarity=0.535 Sum_probs=47.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 85 RKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSES 135 (201)
Q Consensus 85 RR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~ 135 (201)
||.+||++||+||++||.||++|+++||.+|..|+.||..|..++..|.+.
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999998887654
No 2
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=99.40 E-value=1.4e-12 Score=91.68 Aligned_cols=52 Identities=21% Similarity=0.318 Sum_probs=47.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 84 ERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSES 135 (201)
Q Consensus 84 eRR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~ 135 (201)
|||++|+++||+||++||.||++++.+|+.+|..|..+|..|..++..|..+
T Consensus 1 Ekr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e 52 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKE 52 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999988755443
No 3
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=99.30 E-value=4.5e-12 Score=89.55 Aligned_cols=51 Identities=27% Similarity=0.346 Sum_probs=42.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 86 KQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESH 136 (201)
Q Consensus 86 R~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~ 136 (201)
..++..+||+||+|||.||++|+.+|+.+|..|+.+|..|..++..|++.+
T Consensus 10 ~~~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 10 AALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344599999999999999999999999999999998888887776543
No 4
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=99.29 E-value=1.4e-11 Score=85.69 Aligned_cols=59 Identities=22% Similarity=0.317 Sum_probs=50.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 85 RKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEA 150 (201)
Q Consensus 85 RR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael 150 (201)
||++|+++||+||++||.||++++.+|+.+|..|..+|..|..++..|. .|+..|+..+
T Consensus 1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~-------~e~~~Lk~~l 59 (61)
T 1t2k_D 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLR-------NEVAQLKQLL 59 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHh
Confidence 5789999999999999999999999999999999999999998887654 4555555443
No 5
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=99.22 E-value=2.7e-11 Score=84.63 Aligned_cols=50 Identities=30% Similarity=0.436 Sum_probs=45.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 85 RKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSE 134 (201)
Q Consensus 85 RR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~ 134 (201)
|+.||..+||+||++||.||++++.+|+.+|..|+.+|..|..++..|..
T Consensus 1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~ 50 (62)
T 1jnm_A 1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLRE 50 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788899999999999999999999999999999999999888876544
No 6
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=99.11 E-value=2.7e-10 Score=82.28 Aligned_cols=61 Identities=25% Similarity=0.301 Sum_probs=50.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 86 KQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARL 146 (201)
Q Consensus 86 R~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~L 146 (201)
..||+..||+|+|.+|.||++|+.+||.+|..|+.++..|..++..|...+..|..||..|
T Consensus 9 ~~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 9 SSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3688999999999999999999999999999999998887666666666666666666554
No 7
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=99.07 E-value=4.5e-10 Score=79.05 Aligned_cols=60 Identities=22% Similarity=0.338 Sum_probs=46.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 85 RKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEAS 151 (201)
Q Consensus 85 RR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~ 151 (201)
|+.+++.+||.||+|+|.||++++.+|+.++..|+.+|..|..++..| ..|+..|+.-+.
T Consensus 2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L-------~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSL-------AKEIQYLKDLIE 61 (63)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHh
Confidence 678899999999999999999999999999999999999999888754 556666665443
No 8
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=98.66 E-value=1.4e-07 Score=70.55 Aligned_cols=51 Identities=24% Similarity=0.248 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 82 IDERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHV 132 (201)
Q Consensus 82 ~deRR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L 132 (201)
.|++-..|..+|.++|+|||.++++...+++.+|..|+.||..|+.++..|
T Consensus 12 ~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L 62 (87)
T 1hjb_A 12 HSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQL 62 (87)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566778899999999999999999999999999999999998888753
No 9
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=98.65 E-value=1.3e-07 Score=69.40 Aligned_cols=52 Identities=25% Similarity=0.274 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 83 DERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSE 134 (201)
Q Consensus 83 deRR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~ 134 (201)
++.-..|..+|.++|+|||.+++....+++.+|..|+.||..|..++..|..
T Consensus 13 d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~ 64 (78)
T 1gu4_A 13 SDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSR 64 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556789999999999999999999999999999999999888876544
No 10
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=98.49 E-value=5.4e-09 Score=81.01 Aligned_cols=47 Identities=28% Similarity=0.413 Sum_probs=39.2
Q ss_pred chHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 81 IIDERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLID 127 (201)
Q Consensus 81 ~~deRR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~ 127 (201)
...-|.+||.++||.+|+.||.||.+.+++||.++..|..+...|..
T Consensus 33 ~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~ 79 (107)
T 3a5t_A 33 IIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLAS 79 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTS
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45679999999999999999999999999999888766665554433
No 11
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=98.30 E-value=4.9e-06 Score=62.65 Aligned_cols=66 Identities=23% Similarity=0.323 Sum_probs=51.5
Q ss_pred chHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159 81 IIDERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 81 ~~deRR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l 160 (201)
...-|..||.++||-+|+-||.||.....+||.++..|..+-..|+. ||..+..++..+.+++..|
T Consensus 23 v~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~--------------e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 23 VIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQ--------------EVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHh
Confidence 46778899999999999999999999999999888887766655544 5555555666666666555
No 12
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=96.57 E-value=0.0067 Score=39.72 Aligned_cols=39 Identities=31% Similarity=0.357 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 105 QRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEA 150 (201)
Q Consensus 105 q~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael 150 (201)
|+|+.+||.++..|+..|.+|..++.. |..||.-||+-+
T Consensus 2 KaYl~eLE~r~k~le~~naeLEervst-------Lq~EN~mLRqvl 40 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEERLST-------LQNENQMLRHIL 40 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhHHHHHHHh
Confidence 589999999999999999888877775 566888777654
No 13
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=96.57 E-value=0.017 Score=42.65 Aligned_cols=51 Identities=20% Similarity=0.362 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159 110 ELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 110 eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l 160 (201)
-|.-+|+.|+.+|..|..++..++.....+..||..|+++......+|..+
T Consensus 24 lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~L 74 (81)
T 2jee_A 24 LLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777777777777777777778889999999998888888765
No 14
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=96.46 E-value=0.0014 Score=49.47 Aligned_cols=33 Identities=30% Similarity=0.261 Sum_probs=28.2
Q ss_pred chHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 043159 81 IIDERKQRRMISNRESARRSRMRKQRHLDELWS 113 (201)
Q Consensus 81 ~~deRR~RR~lsNRESARRSR~RKq~~l~eLe~ 113 (201)
....|..||..+||.+|+++|+||...+++|+.
T Consensus 58 l~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~ 90 (92)
T 1skn_P 58 RQLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH 90 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence 457789999999999999999999999888763
No 15
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=95.78 E-value=0.077 Score=42.06 Aligned_cols=59 Identities=15% Similarity=0.188 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 103 RKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 103 RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
+.++..+.|+.++..+..|...|+.++..+..++..+..|+..|+.++.+|+.++..+.
T Consensus 72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566788888888888888888888888888888888888888888888888887775
No 16
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=95.68 E-value=0.044 Score=37.33 Aligned_cols=48 Identities=27% Similarity=0.381 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 108 LDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQ 155 (201)
Q Consensus 108 l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~ 155 (201)
.+.|-.||+.|+.||..|++++..-..++..|+.|-.-+|+-+..|..
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq~ 52 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQG 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHcc
Confidence 467889999999999999999999999999999988877776665543
No 17
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=95.58 E-value=0.099 Score=38.51 Aligned_cols=56 Identities=14% Similarity=0.171 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
.-++.|+.+|..+-....-|+-+++.|+++...+..||..++.....|++....+.
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk 61 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLK 61 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34788999999999999999999999999999999999997776666666665554
No 18
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=94.97 E-value=0.12 Score=36.30 Aligned_cols=42 Identities=26% Similarity=0.328 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 107 HLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLRE 148 (201)
Q Consensus 107 ~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lra 148 (201)
-+..-|++|.+|..-|..|..++..++.+++.+..||..||.
T Consensus 21 ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 21 ALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 455668899999999999999999999999999999999983
No 19
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=94.44 E-value=0.21 Score=38.03 Aligned_cols=28 Identities=21% Similarity=0.483 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 043159 136 HDRVLQENARLREEASDLRQMLTELQLS 163 (201)
Q Consensus 136 ~~~l~~EN~~Lrael~~Lr~~L~~l~~~ 163 (201)
..+...+=..|++++..|+.+|..|..+
T Consensus 70 ~~~~~~~~e~Lq~E~erLr~~v~~lEeg 97 (100)
T 1go4_E 70 RQRLREDHSQLQAECERLRGLLRAMERG 97 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445566678888999999999888763
No 20
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=94.41 E-value=0.25 Score=37.81 Aligned_cols=45 Identities=29% Similarity=0.310 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 110 ELWSHVVRLRTENHNLID-------KLNHVSESHDRVLQENARLREEASDLR 154 (201)
Q Consensus 110 eLe~qV~~L~~EN~~L~~-------el~~L~~~~~~l~~EN~~Lrael~~Lr 154 (201)
+||..++.++.||..|+. ++..|..++..|.+||..|+.+-...+
T Consensus 41 ~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~~~ 92 (104)
T 3s9g_A 41 ELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELHR 92 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345555555555444444 444455555555555555555544433
No 21
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=93.12 E-value=0.27 Score=33.98 Aligned_cols=39 Identities=28% Similarity=0.283 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 112 WSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEA 150 (201)
Q Consensus 112 e~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael 150 (201)
+.++..|+..|-.|..+++.|..+|...++|+.+|++-+
T Consensus 10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LL 48 (58)
T 3a2a_A 10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLL 48 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568889999999999999999999999999888877654
No 22
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=93.12 E-value=0.45 Score=31.87 Aligned_cols=39 Identities=28% Similarity=0.289 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 112 WSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEA 150 (201)
Q Consensus 112 e~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael 150 (201)
+.++..|+.-|..|..++..|...|..+++|+.+|+.-+
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LL 41 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLL 41 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 578899999999999999999999999999988887654
No 23
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=92.69 E-value=1.5 Score=34.62 Aligned_cols=56 Identities=11% Similarity=0.080 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 104 KQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTE 159 (201)
Q Consensus 104 Kq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~ 159 (201)
=.+.+++++.++..|..+...+..+++.+.++...+..++..|..++.+|...+..
T Consensus 80 L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 80 LSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666666666666666666666666666667777777777777777666544
No 24
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=92.02 E-value=0.18 Score=31.38 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 108 LDELWSHVVRLRTENHNLIDKLNHVSE 134 (201)
Q Consensus 108 l~eLe~qV~~L~~EN~~L~~el~~L~~ 134 (201)
+..||.+|+.|..+|..|..++..|+.
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 456777777777777777776665543
No 25
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=91.81 E-value=0.26 Score=30.80 Aligned_cols=27 Identities=19% Similarity=0.263 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 107 HLDELWSHVVRLRTENHNLIDKLNHVS 133 (201)
Q Consensus 107 ~l~eLe~qV~~L~~EN~~L~~el~~L~ 133 (201)
++..||.+|+.|-.+|..|..++..|+
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk 28 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLK 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 466777777777777766666655544
No 26
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=91.60 E-value=4.7 Score=32.70 Aligned_cols=75 Identities=9% Similarity=-0.016 Sum_probs=50.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhh
Q 043159 87 QRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLR-QMLTELQ 161 (201)
Q Consensus 87 ~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr-~~L~~l~ 161 (201)
.+.+.+-+.+.++.-......+.+-..-+..|..|...|..++..+..+...+..||..|-++...-. +.-..|+
T Consensus 70 I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk~qEAe~MN 145 (152)
T 3a7p_A 70 LAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKTEKETEAMN 145 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444455555666777888899999999999999999999999988887766543 3334444
No 27
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=91.56 E-value=1.8 Score=39.43 Aligned_cols=20 Identities=40% Similarity=0.513 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 043159 142 ENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 142 EN~~Lrael~~Lr~~L~~l~ 161 (201)
.-.+|+++...+++++..+.
T Consensus 559 ~~~~l~~e~~~~~~~~~~l~ 578 (597)
T 3oja_B 559 KQAELRQETSLKRQKVKQLE 578 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444454444
No 28
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=90.83 E-value=1.1 Score=29.37 Aligned_cols=36 Identities=25% Similarity=0.217 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 107 HLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQE 142 (201)
Q Consensus 107 ~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~E 142 (201)
.+..|+.+|..|+.||..|+.+.-.-+.-+.-++.|
T Consensus 4 lvaqlenevaslenenetlkkknlhkkdliayleke 39 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKKKNLHKKDLIAYLEKE 39 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHH
Confidence 356789999999999999988765544444444443
No 29
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=90.70 E-value=1.6 Score=30.26 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=18.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHH
Q 043159 89 RMISNRESARRSRMRKQRHLDELW 112 (201)
Q Consensus 89 R~lsNRESARRSR~RKq~~l~eLe 112 (201)
..-+||.++|++|.|=+..++...
T Consensus 5 kryknr~asrk~rakfkn~lqh~r 28 (63)
T 2c9l_Y 5 KRYKNRVAARKSRAKFKQLLQHYR 28 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999998877665443
No 30
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=90.67 E-value=2.7 Score=42.77 Aligned_cols=59 Identities=14% Similarity=0.252 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159 102 MRKQRHLDELWSHVVRLRTENHNLIDKLNHV----SESHDRVLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 102 ~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L----~~~~~~l~~EN~~Lrael~~Lr~~L~~l 160 (201)
...++.+++|+.++..+..|...|..++..+ .++...|..||..|++++.+|...+...
T Consensus 987 ~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~ 1049 (1080)
T 2dfs_A 987 LSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQ 1049 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555554444333 3455667888888888888887655544
No 31
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=90.55 E-value=2.1 Score=32.33 Aligned_cols=15 Identities=33% Similarity=0.508 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q 043159 139 VLQENARLREEASDL 153 (201)
Q Consensus 139 l~~EN~~Lrael~~L 153 (201)
++.++..+..++.+|
T Consensus 45 aE~~~~~ie~ElEeL 59 (97)
T 2eqb_B 45 AEEEADKLNKEVEDL 59 (97)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 32
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=90.37 E-value=2.6 Score=30.71 Aligned_cols=53 Identities=23% Similarity=0.252 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 109 DELWSHVVRLRTENHNLIDKLN-------HVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 109 ~eLe~qV~~L~~EN~~L~~el~-------~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
.++..+|+.|-.||.+|...-+ .|..+.+.|..|+..|+.++..+++....+.
T Consensus 5 ~gmgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~ 64 (77)
T 2w83_C 5 EFMGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLE 64 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4667788888888888876543 4556788899999999999999888887776
No 33
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=90.11 E-value=0.65 Score=29.33 Aligned_cols=28 Identities=18% Similarity=0.335 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 107 HLDELWSHVVRLRTENHNLIDKLNHVSE 134 (201)
Q Consensus 107 ~l~eLe~qV~~L~~EN~~L~~el~~L~~ 134 (201)
++..||.+|+.|-.+|..|..++..|+.
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4677888888888877777777776654
No 34
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=89.86 E-value=2.2 Score=30.61 Aligned_cols=43 Identities=12% Similarity=0.228 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 110 ELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASD 152 (201)
Q Consensus 110 eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~ 152 (201)
++..++..++.+|+.|..++..+...+..-..+-..++.++..
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~ 46 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKT 46 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777777777777766666555555555543
No 35
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=89.52 E-value=0.56 Score=29.27 Aligned_cols=27 Identities=0% Similarity=0.094 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 107 HLDELWSHVVRLRTENHNLIDKLNHVS 133 (201)
Q Consensus 107 ~l~eLe~qV~~L~~EN~~L~~el~~L~ 133 (201)
++..||.+|+.|-.+|..|..++..|+
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk 28 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIX 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 466777777777777766666666554
No 36
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=89.26 E-value=0.027 Score=42.38 Aligned_cols=26 Identities=31% Similarity=0.267 Sum_probs=22.3
Q ss_pred chHHHHHHHHHHhHHHHHHHHHHHHH
Q 043159 81 IIDERKQRRMISNRESARRSRMRKQR 106 (201)
Q Consensus 81 ~~deRR~RR~lsNRESARRSR~RKq~ 106 (201)
...-|..||.-+||.+|+++|+||..
T Consensus 62 l~lIrdiRRRgKNKvAAqnCRKRKld 87 (91)
T 2kz5_A 62 LALVRDIRRRGKNKVAAQNYRKRKLE 87 (91)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCCCCCC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34668899999999999999999854
No 37
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=88.98 E-value=1.2 Score=32.47 Aligned_cols=44 Identities=27% Similarity=0.304 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 108 LDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEAS 151 (201)
Q Consensus 108 l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~ 151 (201)
.+++..++..++.+|+.|..++..+...+..-..+-..++.++.
T Consensus 8 ~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk 51 (79)
T 3cvf_A 8 REETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVG 51 (79)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777777777777666665555555555543
No 38
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=88.97 E-value=2.7 Score=32.08 Aligned_cols=30 Identities=27% Similarity=0.297 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 105 QRHLDELWSHVVRLRTENHNLIDKLNHVSE 134 (201)
Q Consensus 105 q~~l~eLe~qV~~L~~EN~~L~~el~~L~~ 134 (201)
-..+.+|+.+|..|+.||+.|+.+.+...+
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e~~~~~~ 93 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTENELHRQ 93 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 578899999999999999999988776543
No 39
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=88.57 E-value=3.1 Score=30.27 Aligned_cols=43 Identities=9% Similarity=0.175 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 108 LDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEA 150 (201)
Q Consensus 108 l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael 150 (201)
+.+|..++..|+.|...|+..++.+..++..+....+.+-..+
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dL 64 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQI 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666667777666666666666665555555444444443
No 40
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=88.44 E-value=0.75 Score=28.55 Aligned_cols=26 Identities=4% Similarity=0.204 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 108 LDELWSHVVRLRTENHNLIDKLNHVS 133 (201)
Q Consensus 108 l~eLe~qV~~L~~EN~~L~~el~~L~ 133 (201)
+..||.+|+.|-.+|..|..++..|+
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk 27 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 45677777777666666666665544
No 41
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=88.24 E-value=0.7 Score=27.83 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043159 135 SHDRVLQENARLREEASDLRQML 157 (201)
Q Consensus 135 ~~~~l~~EN~~Lrael~~Lr~~L 157 (201)
-+.++++||.+|++.+.+|-.++
T Consensus 7 llasleaenkqlkakveellakv 29 (31)
T 1p9i_A 7 LLASLEAENKQLKAKVEELLAKV 29 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567888888888888876654
No 42
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=88.19 E-value=1.2 Score=31.59 Aligned_cols=36 Identities=28% Similarity=0.363 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159 125 LIDKLNHVSESHDRVLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 125 L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l 160 (201)
|..++..+......+..||..|+.++..|+..+..+
T Consensus 34 LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 34 LETQVVTLKELHSSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334444455555566777777777777777766543
No 43
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=87.76 E-value=1.4 Score=30.18 Aligned_cols=34 Identities=18% Similarity=0.291 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 128 KLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 128 el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
+...+..+...|..+|..|+.++..|+..+..|.
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666667777777777777766665553
No 44
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=87.56 E-value=0.74 Score=28.77 Aligned_cols=28 Identities=7% Similarity=0.361 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 107 HLDELWSHVVRLRTENHNLIDKLNHVSE 134 (201)
Q Consensus 107 ~l~eLe~qV~~L~~EN~~L~~el~~L~~ 134 (201)
++..||.+|+.|-.+|..|..++..|+.
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 4566777777777777776666665543
No 45
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=87.51 E-value=2.1 Score=31.08 Aligned_cols=18 Identities=22% Similarity=0.185 Sum_probs=10.1
Q ss_pred cchHHHHHHHHHHhHHHH
Q 043159 80 RIIDERKQRRMISNRESA 97 (201)
Q Consensus 80 ~~~deRR~RR~lsNRESA 97 (201)
...-||++|-.++++-.+
T Consensus 10 Hn~~ER~RR~~ln~~f~~ 27 (88)
T 1nkp_A 10 HNVLERQRRNELKRSFFA 27 (88)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 345566666566655444
No 46
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=87.44 E-value=1.9 Score=31.04 Aligned_cols=50 Identities=20% Similarity=0.108 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043159 106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQL 162 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~~ 162 (201)
+++.+||.+++.++.....|...+..-...+ ..|+.++..|..+|.++..
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~I-------d~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTG-------ARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhh
Confidence 4677777777777777766666665554444 4455566666666666653
No 47
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=87.31 E-value=0.79 Score=28.96 Aligned_cols=28 Identities=14% Similarity=0.287 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 107 HLDELWSHVVRLRTENHNLIDKLNHVSE 134 (201)
Q Consensus 107 ~l~eLe~qV~~L~~EN~~L~~el~~L~~ 134 (201)
++..||.+|+.|..+|..|..++..|+.
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ 29 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEK 29 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4567888888888888877777776654
No 48
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=87.20 E-value=3.7 Score=32.12 Aligned_cols=52 Identities=15% Similarity=0.163 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 110 ELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 110 eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
.|+.+..+-....++|..+|..|.+++....+|=.+||.+...|..++.+-.
T Consensus 61 SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~~~ 112 (121)
T 3mq7_A 61 SLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIADKK 112 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhhcc
Confidence 3443333333445555555555555555555555556655555555554443
No 49
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=86.99 E-value=0.83 Score=28.54 Aligned_cols=28 Identities=4% Similarity=0.144 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 107 HLDELWSHVVRLRTENHNLIDKLNHVSE 134 (201)
Q Consensus 107 ~l~eLe~qV~~L~~EN~~L~~el~~L~~ 134 (201)
++..||.+|+.|-.+|..|..++..|+.
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3566777777777777777776665543
No 50
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=86.93 E-value=5.7 Score=29.20 Aligned_cols=33 Identities=18% Similarity=0.381 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159 128 KLNHVSESHDRVLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 128 el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l 160 (201)
.+..|+.+++.+..||..|..++..|+..+.++
T Consensus 57 ~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~ 89 (93)
T 3s4r_A 57 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRL 89 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666666666666666555544
No 51
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=86.86 E-value=0.96 Score=31.24 Aligned_cols=32 Identities=16% Similarity=0.472 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 127 DKLNHVSESHDRVLQENARLREEASDLRQMLT 158 (201)
Q Consensus 127 ~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~ 158 (201)
..+..|..+...|..||..|+.++..|+..|.
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566666777788899999999999888764
No 52
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=86.49 E-value=10 Score=30.69 Aligned_cols=65 Identities=14% Similarity=0.099 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159 96 SARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 96 SARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l 160 (201)
+-+.-+......+..|+..+..-...++.|..++..|.-++..++.....|+++-..|-++|..-
T Consensus 72 ~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~r 136 (152)
T 3a7p_A 72 ILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKK 136 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566666677777777777777888888888788888888888888887777777543
No 53
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=86.48 E-value=12 Score=30.71 Aligned_cols=62 Identities=16% Similarity=0.230 Sum_probs=37.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 87 QRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQ 155 (201)
Q Consensus 87 ~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~ 155 (201)
...+..-=+.=|+.|.+-.+.+.+|+.++..|..|...++. ....+..||..|-.++..|..
T Consensus 71 ~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~-------~~~k~~~e~r~L~Ekl~~lEK 132 (168)
T 3o0z_A 71 YYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKH-------NLEKVEGERKEAQDMLNHSEK 132 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 33455555566677777777777777777666665555444 344555566666666555544
No 54
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=86.39 E-value=1.7 Score=29.52 Aligned_cols=35 Identities=20% Similarity=0.399 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 127 DKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 127 ~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
..+..|......+..+|..|+.++..|+..+..|.
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666667777888888888888887776664
No 55
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=86.38 E-value=0.94 Score=28.28 Aligned_cols=28 Identities=18% Similarity=0.305 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 107 HLDELWSHVVRLRTENHNLIDKLNHVSE 134 (201)
Q Consensus 107 ~l~eLe~qV~~L~~EN~~L~~el~~L~~ 134 (201)
++..||.+|+.|-.+|..|..++..|+.
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4567788888877777777777666544
No 56
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=86.25 E-value=1.8 Score=31.28 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 134 ESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 134 ~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
.....|..||..|+.++..|...+..|.
T Consensus 43 ~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 43 HKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555554443
No 57
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=86.19 E-value=1.3 Score=27.62 Aligned_cols=30 Identities=17% Similarity=0.364 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 129 LNHVSESHDRVLQENARLREEASDLRQMLT 158 (201)
Q Consensus 129 l~~L~~~~~~l~~EN~~Lrael~~Lr~~L~ 158 (201)
..+|..+...|..+|..|..++..|+..|.
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLKXLVX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 345666777788888888888888887663
No 58
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=85.93 E-value=1.3 Score=27.52 Aligned_cols=27 Identities=4% Similarity=0.083 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 108 LDELWSHVVRLRTENHNLIDKLNHVSE 134 (201)
Q Consensus 108 l~eLe~qV~~L~~EN~~L~~el~~L~~ 134 (201)
+..||.+|+.|-.+|..|..++..++.
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 567888888888877777777766543
No 59
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=85.83 E-value=1.4 Score=27.94 Aligned_cols=31 Identities=26% Similarity=0.339 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 118 LRTENHNLIDKLNHVSESHDRVLQENARLRE 148 (201)
Q Consensus 118 L~~EN~~L~~el~~L~~~~~~l~~EN~~Lra 148 (201)
.-.||.+|..+++.-.+++.+|..||..|.+
T Consensus 5 ~L~ENekLhk~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 5 ALKENEKLHKEIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 3468999999999988999999999998864
No 60
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=85.81 E-value=1.7 Score=29.15 Aligned_cols=31 Identities=23% Similarity=0.405 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 113 SHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEA 150 (201)
Q Consensus 113 ~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael 150 (201)
..|+.|+.||..|+.++.. |..++..|++++
T Consensus 19 ~d~eaLk~E~~eLk~k~~~-------L~~~~~el~~~l 49 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEA-------IVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 4556666666655555543 344444444443
No 61
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=85.73 E-value=4.3 Score=27.20 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043159 109 DELWSHVVRLRTENHNLIDKLNH 131 (201)
Q Consensus 109 ~eLe~qV~~L~~EN~~L~~el~~ 131 (201)
.+|..++..|...|..|..-+..
T Consensus 12 ~~l~~~l~~L~~rN~rL~~~L~~ 34 (51)
T 3m91_A 12 HQLEARIDSLAARNSKLMETLKE 34 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555444444443
No 62
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=85.70 E-value=6.2 Score=26.47 Aligned_cols=34 Identities=18% Similarity=0.301 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 128 KLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 128 el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
.+..|......+..+|..|+.++..|+..+..|.
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666677777777777777777666553
No 63
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=85.64 E-value=8.4 Score=27.95 Aligned_cols=61 Identities=21% Similarity=0.250 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 101 RMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 101 R~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
|+|=++.+..-..++..|+.....|..--..|..-+..+..|-..|...+..|+.+...|.
T Consensus 13 Rrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 13 RWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677888888899999999999888888888888999999999999999999988876
No 64
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=85.47 E-value=2.5 Score=32.04 Aligned_cols=41 Identities=22% Similarity=0.303 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 043159 127 DKLNHVSESHDRVLQENARLREEASDLRQMLTELQLSSPYT 167 (201)
Q Consensus 127 ~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~~~~~~~ 167 (201)
.++..++++++.|..||..|+.++..|..+|....+.+-|+
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~ 52 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYD 52 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 36777888888999999999999999999998876656664
No 65
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=85.23 E-value=5.7 Score=33.08 Aligned_cols=52 Identities=13% Similarity=0.178 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 108 LDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTE 159 (201)
Q Consensus 108 l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~ 159 (201)
+..|+.++..|+..+..|...+..|...++.++...+.+.+-+.++..+|..
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~ 141 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQ 141 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHH
Confidence 4555555555555566666666655555666666556655666666555543
No 66
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=84.97 E-value=1.3 Score=38.64 Aligned_cols=27 Identities=22% Similarity=0.431 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 106 RHLDELWSHVVRLRTENHNLIDKLNHV 132 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~el~~L 132 (201)
..+.+|+.++..|...|..|...+..+
T Consensus 54 ~~l~eL~~ql~~L~arNe~L~~~Lk~a 80 (251)
T 3m9b_A 54 RDIHQLEARIDSLAARNSKLMETLKEA 80 (251)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666665555554443
No 67
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=84.88 E-value=6.8 Score=28.54 Aligned_cols=42 Identities=24% Similarity=0.287 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 117 RLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLT 158 (201)
Q Consensus 117 ~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~ 158 (201)
..-.||..|..++..+...+..+..||..|+.-+...+....
T Consensus 31 eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~~lae 72 (79)
T 2zxx_A 31 EALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMAE 72 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444689999999999999999999999998877666555443
No 68
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=84.85 E-value=11 Score=34.12 Aligned_cols=42 Identities=14% Similarity=0.102 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 117 RLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLT 158 (201)
Q Consensus 117 ~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~ 158 (201)
.+..+++.+..+++...+.++.+..|...|+.++.+.++++.
T Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~ 561 (597)
T 3oja_B 520 FKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQA 561 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHH
Confidence 333333334434433334444444444444444443333333
No 69
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=84.83 E-value=1.9 Score=28.96 Aligned_cols=24 Identities=17% Similarity=0.178 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 043159 137 DRVLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 137 ~~l~~EN~~Lrael~~Lr~~L~~l 160 (201)
..|..||..|++++..|...+..+
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el 45 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKL 45 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433
No 70
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=84.77 E-value=1.7 Score=31.61 Aligned_cols=42 Identities=26% Similarity=0.355 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 109 DELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEA 150 (201)
Q Consensus 109 ~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael 150 (201)
++|-.+|++|..|+..|+.++..+.+....+...+..|.+++
T Consensus 33 ~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeEl 74 (77)
T 2w83_C 33 NDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777766666665555555555554444
No 71
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=84.55 E-value=0.79 Score=33.37 Aligned_cols=31 Identities=23% Similarity=0.310 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 120 TENHNLIDKLNHVSESHDRVLQENARLREEA 150 (201)
Q Consensus 120 ~EN~~L~~el~~L~~~~~~l~~EN~~Lrael 150 (201)
.|...|+.+|..|.++...|+.||..||.-+
T Consensus 15 EEVevLKe~I~EL~e~~~qLE~EN~~Lk~~a 45 (78)
T 1dip_A 15 EEVEILKEQIRELVEKNSQLERENTLLKTLA 45 (78)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3556677777788888888888999888653
No 72
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=84.13 E-value=1.2 Score=27.63 Aligned_cols=29 Identities=17% Similarity=0.384 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 130 NHVSESHDRVLQENARLREEASDLRQMLT 158 (201)
Q Consensus 130 ~~L~~~~~~l~~EN~~Lrael~~Lr~~L~ 158 (201)
.+|..+...|..+|..|..++..|+..|.
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLKKLVG 31 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 35566777888899999999998887653
No 73
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=83.57 E-value=3.7 Score=29.43 Aligned_cols=45 Identities=20% Similarity=0.161 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 110 ELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 110 eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
+|+.++..|+..-.-+-.-++.| -..=.+-..++..|+++|..|.
T Consensus 11 ~le~Ri~~LE~klAfqE~tIeeL-------n~~v~~Qq~~Id~L~~ql~~L~ 55 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALTEL-------SEALADARLTGARNAELIRHLL 55 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666655544444333332 2222333445566666666665
No 74
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=82.67 E-value=6 Score=30.19 Aligned_cols=12 Identities=33% Similarity=0.750 Sum_probs=6.3
Q ss_pred hHHHHHHHHHHh
Q 043159 82 IDERKQRRMISN 93 (201)
Q Consensus 82 ~deRR~RR~lsN 93 (201)
.++|=++-|++|
T Consensus 7 vEEKyrKAMVsn 18 (103)
T 4h22_A 7 VEEKYKKAMVSN 18 (103)
T ss_dssp -CCTHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 345555566664
No 75
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=82.64 E-value=11 Score=38.26 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159 135 SHDRVLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 135 ~~~~l~~EN~~Lrael~~Lr~~L~~l 160 (201)
.+..+..+...|.+++.++...+..+
T Consensus 914 ~l~~l~~~~~~Le~~l~ele~elee~ 939 (1184)
T 1i84_S 914 MRVRLAAKKQELEEILHEMEARIEEE 939 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555554444
No 76
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=81.78 E-value=8.7 Score=27.53 Aligned_cols=58 Identities=21% Similarity=0.223 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 104 KQRHLDELWSHVVRLRTENHNLIDKLNHV------SESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 104 Kq~~l~eLe~qV~~L~~EN~~L~~el~~L------~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
-++.++.|+.++..|+.+...|..++..- -..+..+..+=..+..++..+-.++..|.
T Consensus 20 eqrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe 83 (89)
T 2lw1_A 20 LQRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLE 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35679999999999999999999998642 24577788888888888888888877664
No 77
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=81.72 E-value=13 Score=27.24 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 043159 138 RVLQENARLREEASDLRQMLT 158 (201)
Q Consensus 138 ~l~~EN~~Lrael~~Lr~~L~ 158 (201)
.|+.||..|++++..|...+.
T Consensus 47 ~Le~EN~~Lr~~v~~L~~E~~ 67 (87)
T 1hjb_A 47 ELTAENERLQKKVEQLSRELS 67 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444443333
No 78
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=81.58 E-value=22 Score=29.56 Aligned_cols=45 Identities=20% Similarity=0.195 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 107 HLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEAS 151 (201)
Q Consensus 107 ~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~ 151 (201)
++-+||..-..|+.....+...+..+..+++.+...|+-|-.++.
T Consensus 110 ~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~ 154 (189)
T 2v71_A 110 YVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELD 154 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333444444444444444444444443
No 79
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=81.45 E-value=15 Score=27.58 Aligned_cols=71 Identities=17% Similarity=0.163 Sum_probs=51.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 91 ISNRESARRSRMRKQRHLDELWSHVVRLR---TENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 91 lsNRESARRSR~RKq~~l~eLe~qV~~L~---~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
..|-.+|-..=..|+..+++|...+..++ .....|+.++......+..-.+.=..+..+...|...|..++
T Consensus 8 ~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq 81 (94)
T 3jsv_C 8 RQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQ 81 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34556677777779999999999888888 566778888888777766666655666666666666666655
No 80
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=81.38 E-value=13 Score=28.49 Aligned_cols=53 Identities=13% Similarity=0.183 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 107 HLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTE 159 (201)
Q Consensus 107 ~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~ 159 (201)
.+..|+.++..|+..+..|...+..|.+.++.++...+..-+-+.++..++..
T Consensus 36 ~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~ 88 (111)
T 2v66_B 36 QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQ 88 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHH
Confidence 46668888888888888888888888888888888887777777777777654
No 81
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=81.34 E-value=13 Score=27.24 Aligned_cols=37 Identities=24% Similarity=0.314 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 117 RLRTENHNLIDKLNHVSESHDRVLQENARLREEASDL 153 (201)
Q Consensus 117 ~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~L 153 (201)
..-.||..|..++..+.+.+..+..+|..|+.-+...
T Consensus 43 eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~~ 79 (83)
T 1uii_A 43 EALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHV 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445788888888877777777777777666554443
No 82
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=81.24 E-value=2.9 Score=25.93 Aligned_cols=29 Identities=3% Similarity=0.172 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 130 NHVSESHDRVLQENARLREEASDLRQMLT 158 (201)
Q Consensus 130 ~~L~~~~~~l~~EN~~Lrael~~Lr~~L~ 158 (201)
.+|..+...+..+|..|..++..|+..|.
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIKXLLX 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 45566777788899999999998887763
No 83
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=80.96 E-value=2.9 Score=27.22 Aligned_cols=25 Identities=28% Similarity=0.283 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 105 QRHLDELWSHVVRLRTENHNLIDKL 129 (201)
Q Consensus 105 q~~l~eLe~qV~~L~~EN~~L~~el 129 (201)
.....+||.+|..|+.||+.|+.-+
T Consensus 16 e~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 16 ENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 4567889999999999999887654
No 84
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=80.90 E-value=15 Score=27.23 Aligned_cols=31 Identities=16% Similarity=0.218 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 108 LDELWSHVVRLRTENHNLIDKLNHVSESHDR 138 (201)
Q Consensus 108 l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~ 138 (201)
...|..+++.|..|+..+..++..+++++..
T Consensus 57 ~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~ 87 (90)
T 2wt7_B 57 KTQLIQQVEQLKQEVSRLARERDAYKVKSEK 87 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666666666665554
No 85
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=80.89 E-value=3 Score=26.01 Aligned_cols=30 Identities=10% Similarity=0.259 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 129 LNHVSESHDRVLQENARLREEASDLRQMLT 158 (201)
Q Consensus 129 l~~L~~~~~~l~~EN~~Lrael~~Lr~~L~ 158 (201)
.++|..+...+..+|..|..++..|+..|.
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIXKLLX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 345666777888899999999998887763
No 86
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=80.65 E-value=6.8 Score=35.43 Aligned_cols=35 Identities=9% Similarity=0.068 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVL 140 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~ 140 (201)
..+.+|+.++..|+.+...+..++..+.+++...+
T Consensus 10 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 44 (403)
T 4etp_A 10 EKIAALKEKIAALKEKIKDTELGMKELNEILIKEE 44 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444333333
No 87
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=80.37 E-value=21 Score=36.37 Aligned_cols=56 Identities=23% Similarity=0.272 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhh
Q 043159 106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVL----QENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~----~EN~~Lrael~~Lr~~L~~l~ 161 (201)
+.+..|+.+++.|+.+.+.+..+...+.+.+..+. ..-..|+.+...|++.+.++.
T Consensus 984 ~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 984 NRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444333322 222334444445555555444
No 88
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=80.35 E-value=8.2 Score=27.81 Aligned_cols=50 Identities=14% Similarity=0.240 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 109 DELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 109 ~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
++||.+|..|+.--..|..++..|..++. +-...||+++..|..++....
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfARLLaEy~---ssQ~KLKqRit~LE~~~~~~~ 52 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFARILAEYE---SMQQKLKQRLTKVEKFLKPLI 52 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcccC
Confidence 46788888888877777777776655443 335689999999999998865
No 89
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=80.23 E-value=1.7 Score=29.24 Aligned_cols=30 Identities=17% Similarity=0.236 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 128 KLNHVSESHDRVLQENARLREEASDLRQML 157 (201)
Q Consensus 128 el~~L~~~~~~l~~EN~~Lrael~~Lr~~L 157 (201)
.+..|..+...|..||..|+.++..|++.+
T Consensus 23 ~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 23 YVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355666677788889999999998887654
No 90
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=79.97 E-value=9.5 Score=25.47 Aligned_cols=29 Identities=14% Similarity=0.185 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 113 SHVVRLRTENHNLIDKLNHVSESHDRVLQ 141 (201)
Q Consensus 113 ~qV~~L~~EN~~L~~el~~L~~~~~~l~~ 141 (201)
.++..|+.++..|..++..|..-+.....
T Consensus 9 ~r~~~l~~~l~~L~~rN~rL~~~L~~AR~ 37 (51)
T 3m91_A 9 RDIHQLEARIDSLAARNSKLMETLKEARQ 37 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555444444444443333333
No 91
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=79.62 E-value=9.7 Score=25.01 Aligned_cols=44 Identities=14% Similarity=0.216 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 110 ELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQM 156 (201)
Q Consensus 110 eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~ 156 (201)
+||.+|..|+.--..|..++..|..++.+ -...|+.++..|..+
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~s---sq~KlKqRit~lE~~ 45 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNA---TQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhc
Confidence 57777877777777776666665544332 345677777766543
No 92
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=79.53 E-value=9.5 Score=29.82 Aligned_cols=39 Identities=31% Similarity=0.328 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 114 HVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASD 152 (201)
Q Consensus 114 qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~ 152 (201)
+|..|+.|+..|..++.....+..++..+|..|..++..
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~ 110 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIAD 110 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhh
Confidence 466666666666666666666667777777777766543
No 93
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=79.39 E-value=9.1 Score=25.80 Aligned_cols=50 Identities=20% Similarity=0.266 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 109 DELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLT 158 (201)
Q Consensus 109 ~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~ 158 (201)
..+...+..|+.+.+.++.++....+.++.|..=...|-.+++..|..|.
T Consensus 3 ~~~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRkLLE 52 (59)
T 1gk6_A 3 KQLEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRKLLE 52 (59)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 45666777777777788888887778888888888889999999888775
No 94
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=79.07 E-value=1.8 Score=29.15 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 132 VSESHDRVLQENARLREEASDLRQM 156 (201)
Q Consensus 132 L~~~~~~l~~EN~~Lrael~~Lr~~ 156 (201)
+...+..+..||..|+.++..|..+
T Consensus 32 v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 32 VRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344555555666666665555543
No 95
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=79.07 E-value=2.3 Score=25.06 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 043159 138 RVLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 138 ~l~~EN~~Lrael~~Lr~~L~~l 160 (201)
.++-||..|.+.+..|.+++..+
T Consensus 4 alefendaleqkiaalkqkiasl 26 (28)
T 3ra3_A 4 ALEFENDALEQKIAALKQKIASL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhccHHHHHHHHHHHHHHHHh
Confidence 45566666666666666666654
No 96
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=78.98 E-value=2.8 Score=29.68 Aligned_cols=26 Identities=19% Similarity=0.222 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159 135 SHDRVLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 135 ~~~~l~~EN~~Lrael~~Lr~~L~~l 160 (201)
....+..|...|+.+...|+++|..+
T Consensus 55 ~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 55 KNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444555555555555555544
No 97
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=78.62 E-value=20 Score=27.65 Aligned_cols=48 Identities=23% Similarity=0.304 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 101 RMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQ 155 (201)
Q Consensus 101 R~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~ 155 (201)
...-+.++..|..+|..|+.+.. .-+...+.+..||..|+.++..|+.
T Consensus 35 ~~E~q~~v~ql~~~i~~Le~eL~-------e~r~~~q~a~~e~e~Lr~e~~~l~~ 82 (120)
T 3i00_A 35 KTESQRVVLQLKGHVSELEADLA-------EQQHLRQQAADDCEFLRAELDELRR 82 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666666666655544 4444455677788888888887643
No 98
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=78.58 E-value=4.1 Score=24.77 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 108 LDELWSHVVRLRTENHNLIDKLNHVS 133 (201)
Q Consensus 108 l~eLe~qV~~L~~EN~~L~~el~~L~ 133 (201)
+..|+.+|.+.+.||-+|..++..|.
T Consensus 3 vaqlekevaqaeaenyqleqevaqle 28 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLE 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34556666666666655555555443
No 99
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=78.52 E-value=15 Score=27.90 Aligned_cols=18 Identities=11% Similarity=0.248 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 043159 140 LQENARLREEASDLRQML 157 (201)
Q Consensus 140 ~~EN~~Lrael~~Lr~~L 157 (201)
......|+.++..|+..|
T Consensus 64 Kr~~~~L~~~~~~lk~~L 81 (103)
T 4h22_A 64 KHAHSILQFQFAEVKEAL 81 (103)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334444444444444
No 100
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=78.47 E-value=13 Score=25.15 Aligned_cols=34 Identities=18% Similarity=0.285 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 128 KLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 128 el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
.+..|..+...|..+|..|+.++..|+..+..|.
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666777777777777777777766654
No 101
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=78.30 E-value=32 Score=30.55 Aligned_cols=53 Identities=17% Similarity=0.057 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159 108 LDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 108 l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l 160 (201)
..+++.+....+.+....+.+++.++++.+.+..+...+..++.+.++.|+++
T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (487)
T 3oja_A 423 YVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQEL 475 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHH
Confidence 34444444455555555555556555555555555666666666666655554
No 102
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=78.26 E-value=3.6 Score=25.62 Aligned_cols=28 Identities=11% Similarity=0.191 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 107 HLDELWSHVVRLRTENHNLIDKLNHVSE 134 (201)
Q Consensus 107 ~l~eLe~qV~~L~~EN~~L~~el~~L~~ 134 (201)
++..|+.+|+.|-.++..|..++..|++
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4566777777777777777666665543
No 103
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=78.25 E-value=18 Score=32.21 Aligned_cols=42 Identities=19% Similarity=0.281 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 120 TENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 120 ~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
.|-....+..+..+++...+..||++|+.++.++-..+.+..
T Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (487)
T 3oja_A 428 SVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASAN 469 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcc
Confidence 333334455556666777788888888888888887777654
No 104
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=78.24 E-value=4.6 Score=28.84 Aligned_cols=18 Identities=11% Similarity=0.038 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 043159 106 RHLDELWSHVVRLRTENH 123 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~ 123 (201)
.|+..|+.+...|..+..
T Consensus 47 ~yI~~L~~~~~~l~~e~~ 64 (80)
T 1nlw_A 47 LHIKKLEDSDRKAVHQID 64 (80)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444443333333
No 105
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=78.24 E-value=21 Score=27.45 Aligned_cols=65 Identities=15% Similarity=0.248 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159 96 SARRSRMRKQRHLDELWSHVVRLRT---ENHNLIDKLNHVSES-------HDRVLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 96 SARRSR~RKq~~l~eLe~qV~~L~~---EN~~L~~el~~L~~~-------~~~l~~EN~~Lrael~~Lr~~L~~l 160 (201)
+|-..=..|+..+++|..++..++. ...-|+.++...... -..+..|...|..++..|.+++..+
T Consensus 35 ~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~l 109 (110)
T 2v4h_A 35 QAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKL 109 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 3333444466666666666666655 444555555544443 3445556666666666666655443
No 106
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=77.71 E-value=16 Score=26.77 Aligned_cols=36 Identities=25% Similarity=0.292 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 117 RLRTENHNLIDKLNHVSESHDRVLQENARLREEASD 152 (201)
Q Consensus 117 ~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~ 152 (201)
..-.||..|..++..+...+..+..||..|++-...
T Consensus 35 eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~ 70 (83)
T 1wlq_A 35 EALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEH 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444678888888888888888888888888765443
No 107
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=77.59 E-value=7.5 Score=35.39 Aligned_cols=24 Identities=21% Similarity=0.169 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 111 LWSHVVRLRTENHNLIDKLNHVSE 134 (201)
Q Consensus 111 Le~qV~~L~~EN~~L~~el~~L~~ 134 (201)
|..++..|+.++.++..++..+.+
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~~~~~ 38 (412)
T 3u06_A 15 LRQRTEELLRCNEQQAAELETCKE 38 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 108
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=77.39 E-value=11 Score=27.04 Aligned_cols=48 Identities=19% Similarity=0.141 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 108 LDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQ 155 (201)
Q Consensus 108 l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~ 155 (201)
+.+=+.++..|+..-.-=..-.+.|.-++-++--||..|..++.+|.+
T Consensus 27 L~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~~ 74 (75)
T 3a7o_A 27 LKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLKK 74 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHhc
Confidence 333333444444333333333445666677788899999988887764
No 109
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=76.40 E-value=3.3 Score=36.01 Aligned_cols=43 Identities=14% Similarity=0.245 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043159 113 SHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQL 162 (201)
Q Consensus 113 ~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~~ 162 (201)
.++..|+.++..|..++. .|..+=..++.++..|+..|..|+.
T Consensus 54 ~~l~eL~~ql~~L~arNe-------~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 54 RDIHQLEARIDSLAARNS-------KLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHHHTTTHH-------HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344444444444444444 4444555555555566666666653
No 110
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=76.32 E-value=1.3 Score=37.79 Aligned_cols=34 Identities=26% Similarity=0.381 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 043159 116 VRLRTENHNLIDKLNHVSES---HDRVLQENARLREE 149 (201)
Q Consensus 116 ~~L~~EN~~L~~el~~L~~~---~~~l~~EN~~Lrae 149 (201)
..|..||++|+.++..|+.+ +..+..||.+||+.
T Consensus 22 ~~l~~eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr~l 58 (255)
T 2j5u_A 22 KNTYTENQHLKERLEELAQLESEVADLKKENKDLKES 58 (255)
T ss_dssp ----CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777665542 33445555555443
No 111
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=76.17 E-value=24 Score=27.01 Aligned_cols=47 Identities=19% Similarity=0.215 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 105 QRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEAS 151 (201)
Q Consensus 105 q~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~ 151 (201)
+.++-+||..-+.|+.........+..+..++..+...|+-|-.++.
T Consensus 55 ~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~ 101 (111)
T 2v66_B 55 HKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELD 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444443
No 112
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=76.17 E-value=7.3 Score=27.93 Aligned_cols=27 Identities=19% Similarity=0.165 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 104 KQRHLDELWSHVVRLRTENHNLIDKLN 130 (201)
Q Consensus 104 Kq~~l~eLe~qV~~L~~EN~~L~~el~ 130 (201)
|...+.+|+.++.....+.+.|+.++.
T Consensus 38 kd~~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 38 RDALIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555444
No 113
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=75.55 E-value=12 Score=28.77 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 106 RHLDELWSHVVRLRTENHNLIDKLNH 131 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~el~~ 131 (201)
.-+++|..++..|+-||..|++++..
T Consensus 8 ~t~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 8 KTYEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45799999999999999999999873
No 114
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=75.46 E-value=22 Score=27.02 Aligned_cols=45 Identities=18% Similarity=0.166 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEA 150 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael 150 (201)
+.....|.+|+.|+.++.+|+.++.........+..+|..|....
T Consensus 11 ~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~lq~~~ 55 (125)
T 1joc_A 11 ERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQIKH 55 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Confidence 445556667888888888888888877766666777777765443
No 115
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=74.78 E-value=20 Score=25.41 Aligned_cols=50 Identities=14% Similarity=0.179 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 109 DELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLT 158 (201)
Q Consensus 109 ~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~ 158 (201)
+.+...+..|+.+-+.++.++....+.++.|..=...|-.+++..|..|.
T Consensus 8 ~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkLLE 57 (74)
T 2xv5_A 8 DTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLE 57 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445555555555566666666666777777777888888988887764
No 116
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=74.68 E-value=11 Score=33.95 Aligned_cols=55 Identities=15% Similarity=0.172 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 107 HLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 107 ~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
.+++|+.++..|+.+...|..++..+..++..+..+=..-......|-..|.+|.
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elk 58 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELR 58 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4677888888888888888888887777666665544444444455666666766
No 117
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=74.29 E-value=6.8 Score=24.65 Aligned_cols=30 Identities=10% Similarity=0.201 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 130 NHVSESHDRVLQENARLREEASDLRQMLTE 159 (201)
Q Consensus 130 ~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~ 159 (201)
.+|..+...|..+|..|..++..|+..|..
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 344555566777788888888888877754
No 118
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=73.84 E-value=4.9 Score=24.11 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 109 DELWSHVVRLRTENHNLIDKLNHVSE 134 (201)
Q Consensus 109 ~eLe~qV~~L~~EN~~L~~el~~L~~ 134 (201)
+.|..-+..|+.||.+|+.+++.+..
T Consensus 2 dqlnallasleaenkqlkakveella 27 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVEELLA 27 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788899999999988887643
No 119
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=73.80 E-value=24 Score=29.89 Aligned_cols=47 Identities=21% Similarity=0.299 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhc
Q 043159 116 VRLRTENHNLIDKLNHVSESHDRVLQENARLREEASD---LRQMLTELQL 162 (201)
Q Consensus 116 ~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~---Lr~~L~~l~~ 162 (201)
...-.||..|..++..+.+.+..+..||..|+.-+.. |...|..|..
T Consensus 111 ~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~l~~ 160 (209)
T 2wvr_A 111 YEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNG 160 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445689999999999999999999999888876554 4455555543
No 120
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=73.75 E-value=20 Score=26.23 Aligned_cols=42 Identities=24% Similarity=0.365 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043159 114 HVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQL 162 (201)
Q Consensus 114 qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~~ 162 (201)
++...+..|..+.+++. ..+..|..|..++..|+.++.+++.
T Consensus 32 ELs~vr~~ni~~eskL~-------eae~rn~eL~~e~~~l~~~~eelq~ 73 (81)
T 1wt6_A 32 EMEAIRTDNQNFASQLR-------EAEARNRDLEAHVRQLQERMELLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44555555655555544 5566777777778888888877763
No 121
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=73.65 E-value=3.9 Score=25.48 Aligned_cols=29 Identities=10% Similarity=0.408 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 130 NHVSESHDRVLQENARLREEASDLRQMLT 158 (201)
Q Consensus 130 ~~L~~~~~~l~~EN~~Lrael~~Lr~~L~ 158 (201)
.+|..+...+..+|..|..++..|+..|.
T Consensus 4 nQLEdKvEeLl~~~~~L~~EV~RLk~lL~ 32 (34)
T 2bni_A 4 KQIEDKLEEILSKGHHICNELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHHhc
Confidence 45556677788889999999988887654
No 122
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=73.63 E-value=7 Score=32.72 Aligned_cols=14 Identities=36% Similarity=0.344 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 043159 114 HVVRLRTENHNLID 127 (201)
Q Consensus 114 qV~~L~~EN~~L~~ 127 (201)
.|..|..||..|..
T Consensus 21 LV~~L~~En~~L~~ 34 (190)
T 4emc_A 21 LVANLVNENFVLSE 34 (190)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 123
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=72.60 E-value=17 Score=23.71 Aligned_cols=44 Identities=20% Similarity=0.215 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 114 HVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQML 157 (201)
Q Consensus 114 qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L 157 (201)
-|.+|+.|...|..+.+.|+.+.-....==+-|..+++.||.++
T Consensus 4 lvaqlenevaslenenetlkkknlhkkdliaylekeianlrkki 47 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 36777777777777777776654443333455666777777665
No 124
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=72.58 E-value=17 Score=29.34 Aligned_cols=29 Identities=21% Similarity=0.241 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 133 SESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 133 ~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
+.....+...|..|+.++.+-...|..++
T Consensus 107 r~~~~~~e~r~~~L~~ql~e~~~~l~~lq 135 (154)
T 2ocy_A 107 RKEKYAIEILNKRLTEQLREKDTLLDTLT 135 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677778888888888888888877
No 125
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=72.55 E-value=19 Score=24.13 Aligned_cols=33 Identities=9% Similarity=0.060 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 107 HLDELWSHVVRLRTENHNLIDKLNHVSESHDRV 139 (201)
Q Consensus 107 ~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l 139 (201)
.+++|..+|..|..+...|...+..++......
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~~v~~a 37 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARSDAQAA 37 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777777777777777666666544433
No 126
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=71.92 E-value=6.6 Score=24.44 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 127 DKLNHVSESHDRVLQENARLREEASDL 153 (201)
Q Consensus 127 ~el~~L~~~~~~l~~EN~~Lrael~~L 153 (201)
+++...++.++.+..+|..|.+++..|
T Consensus 7 rKn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 7 RKNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 344444444555566677766666443
No 127
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=71.91 E-value=5.2 Score=24.93 Aligned_cols=28 Identities=11% Similarity=0.415 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 130 NHVSESHDRVLQENARLREEASDLRQML 157 (201)
Q Consensus 130 ~~L~~~~~~l~~EN~~Lrael~~Lr~~L 157 (201)
.+|..+...+..+|..|..++..|+..|
T Consensus 4 ~QLEdKVEeLl~~n~~Le~EV~RLk~LL 31 (34)
T 1uo4_A 4 KQIEDKGEEILSKLYHIENELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4555667778888888888888887765
No 128
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=71.87 E-value=4.3 Score=29.49 Aligned_cols=21 Identities=29% Similarity=0.294 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 043159 106 RHLDELWSHVVRLRTENHNLI 126 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~ 126 (201)
.++.+|+.++.+|+.||.-|+
T Consensus 22 e~I~EL~e~~~qLE~EN~~Lk 42 (78)
T 1dip_A 22 EQIRELVEKNSQLERENTLLK 42 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555554443
No 129
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=69.82 E-value=2.5 Score=36.14 Aligned_cols=81 Identities=14% Similarity=0.193 Sum_probs=45.1
Q ss_pred chHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 81 IIDERKQRRMISN-------RESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDL 153 (201)
Q Consensus 81 ~~deRR~RR~lsN-------RESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~L 153 (201)
..+.+|.||.+|- ||+..---....++.+++..++++|..||+.+..+++.++.+..+..++=.-.+..+..|
T Consensus 116 kP~~~Rt~~iLSalINF~~FRE~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~te~~p~~k~~~ql 195 (250)
T 2ve7_C 116 CPKAKRTSRFLSGIINFIHFREACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTVTIPSAVYVAQL 195 (250)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC-------------CTTTHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 5678899998764 444444445555666666777777777777777777777666554444433335566667
Q ss_pred HHHHHHhh
Q 043159 154 RQMLTELQ 161 (201)
Q Consensus 154 r~~L~~l~ 161 (201)
...+...+
T Consensus 196 y~~vt~i~ 203 (250)
T 2ve7_C 196 YHQVSKIE 203 (250)
T ss_dssp HHHHHCCE
T ss_pred HHHHhhce
Confidence 77776665
No 130
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=69.77 E-value=31 Score=28.76 Aligned_cols=52 Identities=10% Similarity=0.052 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQML 157 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L 157 (201)
+.+.+|+.++..++..-..+..++..+......+..+=..+++++...+.++
T Consensus 32 ~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l 83 (256)
T 3na7_A 32 KDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKM 83 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555544444444444444444444444444
No 131
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=69.52 E-value=2.9 Score=24.58 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 116 VRLRTENHNLIDKLNHVSESHDRV 139 (201)
Q Consensus 116 ~~L~~EN~~L~~el~~L~~~~~~l 139 (201)
..|+.||..|..++..|++++.++
T Consensus 3 dalefendaleqkiaalkqkiasl 26 (28)
T 3ra3_A 3 DALEFENDALEQKIAALKQKIASL 26 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHhccHHHHHHHHHHHHHHHHh
Confidence 467888888888888887776654
No 132
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=69.48 E-value=24 Score=24.83 Aligned_cols=55 Identities=13% Similarity=0.091 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 105 QRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTE 159 (201)
Q Consensus 105 q~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~ 159 (201)
...++.++.++...+.....+-.++..|..++..++.+=.....++.....+|..
T Consensus 19 ~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 19 LDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666666666666666666666666666666666554
No 133
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=69.47 E-value=29 Score=24.97 Aligned_cols=55 Identities=20% Similarity=0.382 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 104 KQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLT 158 (201)
Q Consensus 104 Kq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~ 158 (201)
-.....+|+.+...|..+...|..++..+...+..|......|...+.+|..+|.
T Consensus 33 ~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl~ 87 (89)
T 3bas_A 33 TERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLVG 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445567888888888888888888888888888999988899988888888764
No 134
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=69.36 E-value=31 Score=25.35 Aligned_cols=13 Identities=15% Similarity=0.294 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHh
Q 043159 148 EEASDLRQMLTEL 160 (201)
Q Consensus 148 ael~~Lr~~L~~l 160 (201)
+++..|.++|+-+
T Consensus 86 ~ev~~L~Rriqll 98 (101)
T 3u1c_A 86 SEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3566666666544
No 135
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=69.32 E-value=8 Score=27.21 Aligned_cols=16 Identities=25% Similarity=0.376 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 043159 138 RVLQENARLREEASDL 153 (201)
Q Consensus 138 ~l~~EN~~Lrael~~L 153 (201)
.+..+|..|++++..|
T Consensus 65 ~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 65 DLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3444555555555443
No 136
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=68.66 E-value=16 Score=26.35 Aligned_cols=15 Identities=13% Similarity=0.346 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q 043159 139 VLQENARLREEASDL 153 (201)
Q Consensus 139 l~~EN~~Lrael~~L 153 (201)
+..+|..|+.++..|
T Consensus 71 L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 71 LRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 334444444444443
No 137
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=68.51 E-value=5.9 Score=23.29 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 043159 139 VLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 139 l~~EN~~Lrael~~Lr~~L~~l 160 (201)
+.+.|.+|++++..|.-.+..+
T Consensus 5 lkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 5 LKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHh
Confidence 4445666666666665555443
No 138
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=67.87 E-value=33 Score=25.13 Aligned_cols=21 Identities=10% Similarity=0.245 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 043159 115 VVRLRTENHNLIDKLNHVSES 135 (201)
Q Consensus 115 V~~L~~EN~~L~~el~~L~~~ 135 (201)
+..|+.+...|..++..+...
T Consensus 27 L~~lEke~~~l~~el~~le~E 47 (96)
T 3q8t_A 27 LEDVEKNRKVVAENLEKVQAE 47 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 139
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=67.78 E-value=16 Score=30.87 Aligned_cols=43 Identities=28% Similarity=0.339 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 111 LWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQML 157 (201)
Q Consensus 111 Le~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L 157 (201)
.|.|++.|+.+|..|..++..|.. ...+|..+-.++..|..+|
T Consensus 70 ~erQ~~~LR~r~~~Le~~L~~Li~----~A~~Ne~l~~~~~~l~l~L 112 (252)
T 3e98_A 70 VERQVRLLRERNIEMRHRLSQLMD----VARENDRLFDKTRRLVLDL 112 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555554432 3445555555544444333
No 140
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=67.60 E-value=5.8 Score=26.62 Aligned_cols=30 Identities=17% Similarity=0.212 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 106 RHLDELWSHVVRLRTENHNLIDKLNHVSES 135 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~ 135 (201)
+.|+.+...+..|..||..|+.++..+.++
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467777788888888888888887766543
No 141
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=67.35 E-value=9.3 Score=27.11 Aligned_cols=70 Identities=19% Similarity=0.185 Sum_probs=36.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 91 ISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 91 lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
..--.+-|+-|.+=...+.+|..-|-..... ..=..-+....+-+..|..++..|.++...|+..+...+
T Consensus 8 ~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k-~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~~ 77 (82)
T 1am9_A 8 TAHNAIEKRYRSSINDKIIELKDLVVGTEAK-LNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKSK 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHhccCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3333455555555566677777666432000 000112223334555566666677777777776666544
No 142
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=67.23 E-value=21 Score=25.21 Aligned_cols=50 Identities=16% Similarity=0.159 Sum_probs=29.4
Q ss_pred chHHHHHHHHHHhHHHHHHHH-------H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 81 IIDERKQRRMISNRESARRSR-------M-------RKQRHLDELWSHVVRLRTENHNLIDKLN 130 (201)
Q Consensus 81 ~~deRR~RR~lsNRESARRSR-------~-------RKq~~l~eLe~qV~~L~~EN~~L~~el~ 130 (201)
..-||++|-.+..+-.+=++- . +--.|+..|+.++..|..++..|+.++.
T Consensus 11 ~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~ 74 (82)
T 1am9_A 11 NAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVH 74 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677776676665553332 1 2235666666666666666666666554
No 143
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=66.90 E-value=54 Score=37.45 Aligned_cols=23 Identities=9% Similarity=0.325 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 043159 138 RVLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 138 ~l~~EN~~Lrael~~Lr~~L~~l 160 (201)
.|..|+.+=.+.+..|...+..+
T Consensus 2081 gL~~Ek~RW~~~~~~l~~~~~~L 2103 (3245)
T 3vkg_A 2081 NLNSERGRWEQQSENFNTQMSTV 2103 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccHHHHHHHHHHHHHhc
Confidence 34455555555555555544444
No 144
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=66.82 E-value=10 Score=23.62 Aligned_cols=29 Identities=10% Similarity=0.265 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 130 NHVSESHDRVLQENARLREEASDLRQMLT 158 (201)
Q Consensus 130 ~~L~~~~~~l~~EN~~Lrael~~Lr~~L~ 158 (201)
.+|..+...|..+|..|..++..|+..|.
T Consensus 4 nQLEdkVEeLl~~~~~Le~eV~RL~~ll~ 32 (34)
T 2hy6_A 4 KQLADAVEELASANYHLANAVARLAKAVG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 34555566677788888888888887664
No 145
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=66.48 E-value=35 Score=24.87 Aligned_cols=53 Identities=8% Similarity=0.077 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 105 QRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQML 157 (201)
Q Consensus 105 q~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L 157 (201)
....+.++.++..++..+..+-.++..|..++..+..+=..+...+......|
T Consensus 22 ~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kL 74 (101)
T 3u59_A 22 IDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKL 74 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666666666666655555444444454444443
No 146
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=65.13 E-value=27 Score=23.04 Aligned_cols=38 Identities=16% Similarity=0.295 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159 123 HNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 123 ~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l 160 (201)
.-|+.++..|++..-+++..-.-|..-++.||..+..+
T Consensus 6 aylrkkiarlkkdnlqlerdeqnlekiianlrdeiarl 43 (52)
T 3he5_B 6 AYLRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARL 43 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444
No 147
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=64.65 E-value=36 Score=24.33 Aligned_cols=55 Identities=15% Similarity=0.166 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 104 KQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLT 158 (201)
Q Consensus 104 Kq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~ 158 (201)
-...+..+...+..|+.+-..++.++....+.++.|..=...|-.+++..|..|.
T Consensus 26 ~~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLLE 80 (86)
T 1x8y_A 26 LARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLE 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 3446667777788888888888888888888888888888889999999888774
No 148
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=64.58 E-value=4.2 Score=34.57 Aligned_cols=16 Identities=13% Similarity=0.210 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 043159 125 LIDKLNHVSESHDRVL 140 (201)
Q Consensus 125 L~~el~~L~~~~~~l~ 140 (201)
|..+++.|++++..+.
T Consensus 24 l~~eN~~Lk~e~~~l~ 39 (255)
T 2j5u_A 24 TYTENQHLKERLEELA 39 (255)
T ss_dssp --CTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445555555444443
No 149
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=64.26 E-value=48 Score=25.70 Aligned_cols=32 Identities=22% Similarity=0.250 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 108 LDELWSHVVRLRTENHNLIDKLNHVSESHDRV 139 (201)
Q Consensus 108 l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l 139 (201)
..+|+.++..|+..|..|..++..+..++..+
T Consensus 52 ~~eL~~~~~~Le~~n~~L~~~lke~~~~~~~l 83 (155)
T 2oto_A 52 AEELEKAKQALEDQRKDLETKLKELQQDYDLA 83 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777788888888888888877777666444
No 150
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=63.92 E-value=10 Score=23.80 Aligned_cols=29 Identities=17% Similarity=0.212 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 131 HVSESHDRVLQENARLREEASDLRQMLTE 159 (201)
Q Consensus 131 ~L~~~~~~l~~EN~~Lrael~~Lr~~L~~ 159 (201)
+|..+...+..+|..|..++..|+..|..
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 33444455666777777777777766643
No 151
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=63.31 E-value=13 Score=22.48 Aligned_cols=26 Identities=19% Similarity=0.318 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 130 NHVSESHDRVLQENARLREEASDLRQ 155 (201)
Q Consensus 130 ~~L~~~~~~l~~EN~~Lrael~~Lr~ 155 (201)
..|.+...+.++||-+|.+++..|..
T Consensus 4 aqlekevaqaeaenyqleqevaqleh 29 (33)
T 1fmh_A 4 AQLEKEVAQAEAENYQLEQEVAQLEH 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34445556678889999988888765
No 152
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=63.20 E-value=11 Score=23.65 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 127 DKLNHVSESHDRVLQENARLREEAS 151 (201)
Q Consensus 127 ~el~~L~~~~~~l~~EN~~Lrael~ 151 (201)
.++.....+...|+.+|..|..++.
T Consensus 13 drlAsyidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 13 DRFANYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444556667778887777664
No 153
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=62.67 E-value=12 Score=26.56 Aligned_cols=27 Identities=19% Similarity=0.415 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 132 VSESHDRVLQENARLREEASDLRQMLT 158 (201)
Q Consensus 132 L~~~~~~l~~EN~~Lrael~~Lr~~L~ 158 (201)
|.+....+..|...|+.+...|+++|.
T Consensus 52 L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 52 LEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344444455555555555555544
No 154
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=62.24 E-value=25 Score=29.34 Aligned_cols=31 Identities=10% Similarity=0.138 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 108 LDELWSHVVRLRTENHNLIDKLNHVSESHDR 138 (201)
Q Consensus 108 l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~ 138 (201)
+..|..++..|..+++....++..|++++..
T Consensus 22 V~~L~~En~~L~~ql~~k~~ei~~L~~ql~s 52 (190)
T 4emc_A 22 VANLVNENFVLSEKLDTKATEIKQLQKQIDS 52 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443333
No 155
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=61.69 E-value=42 Score=24.17 Aligned_cols=30 Identities=30% Similarity=0.300 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 105 QRHLDELWSHVVRLRTENHNLIDKLNHVSE 134 (201)
Q Consensus 105 q~~l~eLe~qV~~L~~EN~~L~~el~~L~~ 134 (201)
+..++.|..+|..|+..++.+..+++.+.+
T Consensus 26 q~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~ 55 (83)
T 2xdj_A 26 QQQLSDNQSDIDSLRGQIQENQYQLNQVVE 55 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 344444444444444444444444444443
No 156
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=61.23 E-value=14 Score=30.69 Aligned_cols=25 Identities=24% Similarity=0.302 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 107 HLDELWSHVVRLRTENHNLIDKLNH 131 (201)
Q Consensus 107 ~l~eLe~qV~~L~~EN~~L~~el~~ 131 (201)
.+.+|..++.+|+.+|+.|+.+.+.
T Consensus 153 ~~~~L~~~n~~LqkeNeRL~~E~n~ 177 (184)
T 3w03_C 153 TIAENQAKNEHLQKENERLLRDWND 177 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555544444443
No 157
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=60.61 E-value=52 Score=25.22 Aligned_cols=15 Identities=33% Similarity=0.459 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHhh
Q 043159 147 REEASDLRQMLTELQ 161 (201)
Q Consensus 147 rael~~Lr~~L~~l~ 161 (201)
+.+...|+..+..+.
T Consensus 67 ~~e~e~Lr~e~~~l~ 81 (120)
T 3i00_A 67 ADDCEFLRAELDELR 81 (120)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334556666666554
No 158
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=60.10 E-value=42 Score=30.44 Aligned_cols=31 Identities=19% Similarity=0.258 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 109 DELWSHVVRLRTENHNLIDKLNHVSESHDRV 139 (201)
Q Consensus 109 ~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l 139 (201)
.+|+.++..|+.+...|.+++..+......+
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~ 36 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETC 36 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666665555555555544433333
No 159
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=59.92 E-value=48 Score=24.27 Aligned_cols=34 Identities=6% Similarity=0.027 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 108 LDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQ 141 (201)
Q Consensus 108 l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~ 141 (201)
.+.++.++..++..+..+-.++..|..++..+..
T Consensus 25 ae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~ 58 (101)
T 3u1c_A 25 AEQAEADKKAAEERSKQLEDDIVQLEKQLRVTED 58 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444333333333
No 160
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=59.31 E-value=18 Score=22.28 Aligned_cols=27 Identities=4% Similarity=0.059 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 131 HVSESHDRVLQENARLREEASDLRQML 157 (201)
Q Consensus 131 ~L~~~~~~l~~EN~~Lrael~~Lr~~L 157 (201)
+|..+...+..+|..|..++..|+..|
T Consensus 4 QLEdKVEell~~~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 4 QLEDKIEENTSKIYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 344455566677777777777777655
No 161
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=57.73 E-value=19 Score=27.39 Aligned_cols=29 Identities=10% Similarity=0.270 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 107 HLDELWSHVVRLRTENHNLIDKLNHVSES 135 (201)
Q Consensus 107 ~l~eLe~qV~~L~~EN~~L~~el~~L~~~ 135 (201)
.+..|+.++..++..+..|...+..+...
T Consensus 44 ~iq~L~~el~~l~~~~~~LE~~l~e~e~~ 72 (129)
T 3tnu_B 44 MIQRLRAEIDNVKKQCANLQNAIADAEQR 72 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 35555555666666666666655555443
No 162
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=57.24 E-value=65 Score=24.93 Aligned_cols=28 Identities=11% Similarity=0.240 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 130 NHVSESHDRVLQENARLREEASDLRQML 157 (201)
Q Consensus 130 ~~L~~~~~~l~~EN~~Lrael~~Lr~~L 157 (201)
..+......|..+|..|+.++.+++...
T Consensus 53 ~eL~~~~~~Le~~n~~L~~~lke~~~~~ 80 (155)
T 2oto_A 53 EELEKAKQALEDQRKDLETKLKELQQDY 80 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555444
No 163
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=57.20 E-value=1.2e+02 Score=28.13 Aligned_cols=21 Identities=10% Similarity=0.110 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 043159 139 VLQENARLREEASDLRQMLTE 159 (201)
Q Consensus 139 l~~EN~~Lrael~~Lr~~L~~ 159 (201)
+.+|=..|++++.+|...+..
T Consensus 121 l~~~~~~l~~~i~~l~~~~~~ 141 (501)
T 1wle_A 121 LRARGREIRKQLTLLYPKEAQ 141 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444433333
No 164
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=57.19 E-value=11 Score=32.20 Aligned_cols=38 Identities=5% Similarity=0.059 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 124 NLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 124 ~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
++..+.+.+..+...+..||+.+++++.+|++.+.+..
T Consensus 145 e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~ 182 (250)
T 2ve7_C 145 EFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDT 182 (250)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHSCC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33444445555556677778888888888887776655
No 165
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=56.71 E-value=36 Score=28.40 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043159 108 LDELWSHVVRLRTENHNLIDKLN 130 (201)
Q Consensus 108 l~eLe~qV~~L~~EN~~L~~el~ 130 (201)
...|..++..|+.+...|..+++
T Consensus 141 ~~~L~~e~~~l~~~~~~l~~qlE 163 (213)
T 1ik9_A 141 NEHLQKENERLLRDWNDVQGRFE 163 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444433333
No 166
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=55.62 E-value=11 Score=24.79 Aligned_cols=25 Identities=24% Similarity=0.244 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 105 QRHLDELWSHVVRLRTENHNLIDKL 129 (201)
Q Consensus 105 q~~l~eLe~qV~~L~~EN~~L~~el 129 (201)
..+++.|+.+|..|+.....|...+
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468888888888888777776544
No 167
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=55.51 E-value=0.18 Score=37.75 Aligned_cols=24 Identities=33% Similarity=0.261 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHH
Q 043159 82 IDERKQRRMISNRESARRSRMRKQ 105 (201)
Q Consensus 82 ~deRR~RR~lsNRESARRSR~RKq 105 (201)
.--|..||.-+||.+|+++|+||.
T Consensus 63 ~lIrdiRRRgKNkvAAqnCRKRKl 86 (90)
T 2lz1_A 63 ALIRDIRRRGKNKVAAQNCRKRKL 86 (90)
T ss_dssp HHHHHHHHHSCSCCCCCCCSCCCC
T ss_pred HHHHHHHHhhhhHHHHHHcchhhc
Confidence 455778899999999999999985
No 168
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=55.42 E-value=54 Score=23.45 Aligned_cols=55 Identities=16% Similarity=0.177 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 107 HLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 107 ~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
.+...+.....|+..+..|..+...|..++..+..-...|-+.-.+|..+|.+++
T Consensus 29 ~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~ 83 (89)
T 3bas_A 29 DLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLK 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666777777777777777777766667677777777778888877775
No 169
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=55.03 E-value=54 Score=23.27 Aligned_cols=49 Identities=22% Similarity=0.307 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
..+..|+.+++.-+.+-..++.++..+.+.++.-..| +.+||+.|..+.
T Consensus 21 ~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~e-------L~elrq~LakL~ 69 (72)
T 3cve_A 21 GQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFE-------LTELRDNLAKLL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-------HHHHHHHHHHhc
Confidence 3445555555555555555555555555555554443 445555555443
No 170
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=54.98 E-value=11 Score=22.15 Aligned_cols=19 Identities=21% Similarity=0.372 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 043159 117 RLRTENHNLIDKLNHVSES 135 (201)
Q Consensus 117 ~L~~EN~~L~~el~~L~~~ 135 (201)
.|.+.|..|+.++..|.-+
T Consensus 4 rlkqknarlkqeiaaleye 22 (28)
T 3ra3_B 4 RLKQKNARLKQEIAALEYE 22 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHH
Confidence 4445555555555544433
No 171
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=54.88 E-value=61 Score=30.25 Aligned_cols=20 Identities=10% Similarity=0.064 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 043159 141 QENARLREEASDLRQMLTEL 160 (201)
Q Consensus 141 ~EN~~Lrael~~Lr~~L~~l 160 (201)
.+=..|.+++.++...|..+
T Consensus 130 ~~i~~l~~~~~~~~~~l~~~ 149 (501)
T 1wle_A 130 KQLTLLYPKEAQLEEQFYLR 149 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444333
No 172
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=54.62 E-value=47 Score=26.23 Aligned_cols=20 Identities=25% Similarity=0.240 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 043159 140 LQENARLREEASDLRQMLTE 159 (201)
Q Consensus 140 ~~EN~~Lrael~~Lr~~L~~ 159 (201)
...|..|++++.+-...|..
T Consensus 102 e~r~~~L~~ql~e~e~ll~~ 121 (135)
T 2e7s_A 102 EILNKRLTEQLREKDMLLDT 121 (135)
T ss_dssp HHHHHHHHHTTTHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444443333333
No 173
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=53.48 E-value=59 Score=27.61 Aligned_cols=48 Identities=13% Similarity=0.278 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 83 DERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESH 136 (201)
Q Consensus 83 deRR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~ 136 (201)
.+...|+-+..|-.+=+ +.+..|+.++.+.+.|+..+...+...+++.
T Consensus 161 sde~Ik~yLa~R~~~lK------~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~ 208 (228)
T 3q0x_A 161 NDSVVKQFLAFRLSEVK------GTCHDLSDDLSRTRDDRDSMVAQLAQCRQQL 208 (228)
T ss_dssp CHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666655554332 3566677777777777776666666554443
No 174
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=53.32 E-value=91 Score=25.41 Aligned_cols=25 Identities=16% Similarity=0.256 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 111 LWSHVVRLRTENHNLIDKLNHVSES 135 (201)
Q Consensus 111 Le~qV~~L~~EN~~L~~el~~L~~~ 135 (201)
+...+..++..+..|...+..|...
T Consensus 39 l~k~~~~~E~~~rELq~~~~~L~~~ 63 (168)
T 3o0z_A 39 MSKSISQLESLNRELQERNRILENS 63 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 175
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=53.10 E-value=71 Score=24.07 Aligned_cols=50 Identities=10% Similarity=0.203 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 107 HLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQM 156 (201)
Q Consensus 107 ~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~ 156 (201)
.+..+...+..|+.+-+.++.++......+..|..=--.|..+++..|..
T Consensus 76 ~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EIatYRkL 125 (129)
T 3tnu_B 76 ALKDARNKLAELEEALQKAKQDMARLLREYQELMNTKLALDVEIATYRKL 125 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444455556666666666666666666666666556666666666543
No 176
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=52.99 E-value=51 Score=22.46 Aligned_cols=35 Identities=9% Similarity=0.016 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 108 LDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQE 142 (201)
Q Consensus 108 l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~E 142 (201)
+++|...+..-..+....+.++..++..++.|..|
T Consensus 37 ~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~e 71 (77)
T 3trt_A 37 FADLSEAANRNNDALRQAKQESTEYRRQVQSLTME 71 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555444444444444444444444444443
No 177
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=52.87 E-value=27 Score=21.68 Aligned_cols=29 Identities=14% Similarity=0.213 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 130 NHVSESHDRVLQENARLREEASDLRQMLT 158 (201)
Q Consensus 130 ~~L~~~~~~l~~EN~~Lrael~~Lr~~L~ 158 (201)
.+|..+...|..+|..|..++..|+..|.
T Consensus 4 nQledKvEel~~~~~~l~nEv~Rl~~lLg 32 (34)
T 2r2v_A 4 KQVADKLEEVASKLYHNANELARVAKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 44555566677777777778877777664
No 178
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=52.64 E-value=73 Score=24.09 Aligned_cols=52 Identities=17% Similarity=0.174 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 108 LDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTE 159 (201)
Q Consensus 108 l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~ 159 (201)
+.+.+..+..|......|-.++..+...+......|..|-+....|...+..
T Consensus 64 l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~ 115 (129)
T 2fxo_A 64 LADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSE 115 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555555555544444444444333
No 179
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=52.25 E-value=50 Score=37.70 Aligned_cols=48 Identities=10% Similarity=0.177 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 114 HVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 114 qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
++...+.+-..|..+++.|+.+++....|-..|+.++.....+|....
T Consensus 2029 ~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~ 2076 (3245)
T 3vkg_A 2029 KQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSI 2076 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555566666777777777888888888888887777766543
No 180
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=52.06 E-value=73 Score=23.93 Aligned_cols=36 Identities=14% Similarity=0.200 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 126 IDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 126 ~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
...+..+++..+....-...|..++..|...|..|.
T Consensus 68 E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLK 103 (119)
T 3ol1_A 68 ENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLK 103 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444455555555555555443
No 181
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=51.91 E-value=1.4e+02 Score=27.81 Aligned_cols=21 Identities=19% Similarity=0.387 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 043159 139 VLQENARLREEASDLRQMLTE 159 (201)
Q Consensus 139 l~~EN~~Lrael~~Lr~~L~~ 159 (201)
+.+|=..|++++.+|...+..
T Consensus 76 l~~~~~~l~~~i~~le~~~~~ 96 (485)
T 3qne_A 76 LIAEKEKLSNEKKEIIEKEAE 96 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444333
No 182
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=51.81 E-value=75 Score=24.02 Aligned_cols=52 Identities=15% Similarity=0.257 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQML 157 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L 157 (201)
..+..+...+..|+.+-+.++.++......+..|..=--.|..+++..|..|
T Consensus 77 ~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EIatYRkLL 128 (131)
T 3tnu_A 77 MQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIATYRRLL 128 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3444455556666666666666666666666666666666666666666544
No 183
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=51.67 E-value=42 Score=23.93 Aligned_cols=31 Identities=13% Similarity=0.050 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 124 NLIDKLNHVSESHDRVLQENARLREEASDLR 154 (201)
Q Consensus 124 ~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr 154 (201)
..-..+..+..++.....+...|+.++.+++
T Consensus 37 ~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 37 QRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333444444445555555555555555443
No 184
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=51.56 E-value=65 Score=23.20 Aligned_cols=50 Identities=22% Similarity=0.235 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043159 106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQL 162 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~~ 162 (201)
..+..|+.+++.-+.+-..++.++..+.+.++.-.. ++.+||+.|..+..
T Consensus 27 ~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~-------eL~elRqgLakL~~ 76 (79)
T 3cvf_A 27 HQLRAMERSLEEARAERERARAEVGRAAQLLDVSLF-------ELSELREGLARLAE 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-------HHHHHHHHHHHhcc
Confidence 344555555555555555555555555555555544 34556666665553
No 185
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=51.52 E-value=61 Score=27.34 Aligned_cols=40 Identities=23% Similarity=0.426 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 115 VVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLR 154 (201)
Q Consensus 115 V~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr 154 (201)
+.+|+.+-.....+.+.|...+..+.+||..|+..+..|.
T Consensus 32 ~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLe 71 (206)
T 3oa7_A 32 LQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLE 71 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 3444444444555555566666666666655555555554
No 186
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=51.36 E-value=68 Score=23.40 Aligned_cols=52 Identities=12% Similarity=0.140 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 108 LDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTE 159 (201)
Q Consensus 108 l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~ 159 (201)
+..++.+...|..+-...-.+.+....+...+..|-..|..++.--...|..
T Consensus 41 l~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdk 92 (96)
T 3q8t_A 41 LEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDK 92 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333334444444444444444444333
No 187
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=50.56 E-value=57 Score=26.89 Aligned_cols=27 Identities=7% Similarity=0.086 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 106 RHLDELWSHVVRLRTENHNLIDKLNHV 132 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~el~~L 132 (201)
+.++-+-..+..|+.+|..|..+++.|
T Consensus 145 elid~~ld~~~~L~~~n~~LqkeNeRL 171 (184)
T 3w03_C 145 ELICYCLDTIAENQAKNEHLQKENERL 171 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555444443333
No 188
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=50.51 E-value=70 Score=23.29 Aligned_cols=36 Identities=11% Similarity=0.178 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 105 QRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVL 140 (201)
Q Consensus 105 q~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~ 140 (201)
+.-...++.++...+..|+.|..++..+.+++..+.
T Consensus 37 r~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq 72 (81)
T 1wt6_A 37 RTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555667777888888888887777776665543
No 189
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=49.82 E-value=58 Score=22.09 Aligned_cols=58 Identities=21% Similarity=0.169 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 104 KQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 104 Kq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
|.+-+.+|+.++..++.--..+..+++.+.-....+..++..=+..+..|.+++..+.
T Consensus 4 ~~~~~~~le~kl~~lEnIv~~l~~eve~~~~~lea~~rq~~~d~~~Ie~Le~kv~~l~ 61 (65)
T 3m0d_C 4 KEKLLAELEGKLRVFENIVAVLNKEVEASHLALATSIHQSQLDRERILSLEQRVVELQ 61 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 4456677777777776666666566665555555444444444555666666665543
No 190
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=49.44 E-value=57 Score=27.21 Aligned_cols=47 Identities=15% Similarity=0.237 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 101 RMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLT 158 (201)
Q Consensus 101 R~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~ 158 (201)
+.||.+-++-|..++..|+.+-..|..++. .|..|.+++..+-+.++
T Consensus 14 ~~Kk~ELi~~L~~kL~~L~~eqe~l~ee~~-----------~N~~lG~~vea~V~~~c 60 (190)
T 3thf_A 14 KQKMDELIKHLNQKIVSLKREQQTISEECS-----------ANDRLGQDLFAKLAEKV 60 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHhHHHHHHHHHHh
Confidence 456778888888888888888877776655 45666665555544443
No 191
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=47.91 E-value=1.6e+02 Score=26.55 Aligned_cols=26 Identities=23% Similarity=0.183 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 107 HLDELWSHVVRLRTENHNLIDKLNHV 132 (201)
Q Consensus 107 ~l~eLe~qV~~L~~EN~~L~~el~~L 132 (201)
.+.+|..+...+..+-+.|+.+.+.+
T Consensus 29 ~~~~~~~~~r~~~~~~~~l~~~~n~~ 54 (421)
T 1ses_A 29 ALLALDREVQELKKRLQEVQTERNQV 54 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443333
No 192
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=47.80 E-value=59 Score=21.64 Aligned_cols=44 Identities=9% Similarity=0.137 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 114 HVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQML 157 (201)
Q Consensus 114 qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L 157 (201)
++.+|..+-+.|..++..|......+..+-..-+++...--.+|
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~Rl 48 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45555555555555555555554444444444444444433333
No 193
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=47.68 E-value=1.7e+02 Score=26.76 Aligned_cols=20 Identities=15% Similarity=0.315 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 043159 140 LQENARLREEASDLRQMLTE 159 (201)
Q Consensus 140 ~~EN~~Lrael~~Lr~~L~~ 159 (201)
.+|=..|++++.+|...+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~ 94 (455)
T 2dq0_A 75 LAKSREIVKRIGELENEVEE 94 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333
No 194
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=47.41 E-value=53 Score=22.77 Aligned_cols=51 Identities=18% Similarity=0.269 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 105 QRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQ 155 (201)
Q Consensus 105 q~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~ 155 (201)
...+.+|..-|-.+....-.=..-|.....-+..|..++..|.+++..|++
T Consensus 28 n~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 28 KDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp HHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666666665443211001111222334456677777777777777765
No 195
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=47.23 E-value=17 Score=28.08 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 125 LIDKLNHVSESHDRVLQENARLREE 149 (201)
Q Consensus 125 L~~el~~L~~~~~~l~~EN~~Lrae 149 (201)
|..++..|.+++..+..|...|+.+
T Consensus 30 l~~~v~~l~~e~k~l~ke~~~l~~~ 54 (171)
T 2zvf_A 30 LPKTVERFFEEWKDQRKEIERLKSV 54 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334443333333333333333333
No 196
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=47.14 E-value=90 Score=23.57 Aligned_cols=10 Identities=40% Similarity=0.361 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 043159 140 LQENARLREE 149 (201)
Q Consensus 140 ~~EN~~Lrae 149 (201)
+.+=..+|++
T Consensus 90 E~eL~~~r~e 99 (131)
T 3tnu_A 90 EEQLAQLRCE 99 (131)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 197
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=46.45 E-value=71 Score=22.18 Aligned_cols=38 Identities=21% Similarity=0.348 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 124 NLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 124 ~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
+++.-+..-..+.++|..=|..|-+++..++.+|..|+
T Consensus 17 evK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQ 54 (63)
T 2w6a_A 17 ELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQ 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHH
Confidence 34444555555677777788888888888888888776
No 198
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=46.18 E-value=28 Score=24.88 Aligned_cols=15 Identities=20% Similarity=0.352 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 043159 139 VLQENARLREEASDL 153 (201)
Q Consensus 139 l~~EN~~Lrael~~L 153 (201)
|..+|..||.++..|
T Consensus 48 L~eq~~lLK~EIRRl 62 (71)
T 3bbp_D 48 LMEQIKLLKSEIRRL 62 (71)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444433
No 199
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=45.99 E-value=63 Score=23.46 Aligned_cols=9 Identities=44% Similarity=0.590 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 043159 146 LREEASDLR 154 (201)
Q Consensus 146 Lrael~~Lr 154 (201)
|.+.+..++
T Consensus 82 l~~~~~~~k 90 (93)
T 3s4r_A 82 LAEDIMRLR 90 (93)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 200
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=45.95 E-value=99 Score=23.68 Aligned_cols=68 Identities=7% Similarity=0.021 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 83 DERKQRRMISNRESARRSRMRKQR---HLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEA 150 (201)
Q Consensus 83 deRR~RR~lsNRESARRSR~RKq~---~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael 150 (201)
-|+...-|..-..-.++.-.++.+ .+.-|+.||.-.+..-..=+.--+.+..+...|..+...|..++
T Consensus 36 AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~ 106 (110)
T 2v4h_A 36 AEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREF 106 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHH
Confidence 333333344434444444444444 67777788876655433322222333333444444444444433
No 201
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=45.85 E-value=1.6e+02 Score=25.93 Aligned_cols=30 Identities=13% Similarity=0.133 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159 131 HVSESHDRVLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 131 ~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l 160 (201)
....++..++.|=..|..++.++++.+..+
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 440 QGQKKVEELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333445556666666666666666666544
No 202
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=45.75 E-value=98 Score=26.23 Aligned_cols=17 Identities=24% Similarity=0.468 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 043159 114 HVVRLRTENHNLIDKLN 130 (201)
Q Consensus 114 qV~~L~~EN~~L~~el~ 130 (201)
++..++.++..|..++.
T Consensus 172 R~~~lK~kl~~l~~~L~ 188 (228)
T 3q0x_A 172 RLSEVKGTCHDLSDDLS 188 (228)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33433333333333333
No 203
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=45.54 E-value=1.1e+02 Score=28.97 Aligned_cols=31 Identities=10% Similarity=0.059 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 108 LDELWSHVVRLRTENHNLIDKLNHVSESHDR 138 (201)
Q Consensus 108 l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~ 138 (201)
+.+...+-+.++.||..++.++...+..+..
T Consensus 36 ~ae~~a~n~~i~aeNeaikkrNa~aka~Ye~ 66 (497)
T 3iox_A 36 VAANNAANAALTAENTAIKKRNADAKADYEA 66 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555566666776666666665554433
No 204
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=45.39 E-value=60 Score=28.80 Aligned_cols=20 Identities=15% Similarity=0.004 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 043159 111 LWSHVVRLRTENHNLIDKLN 130 (201)
Q Consensus 111 Le~qV~~L~~EN~~L~~el~ 130 (201)
||..|.....+.+.|...+.
T Consensus 17 ~e~~i~~~~~~i~~L~~~l~ 36 (323)
T 1lwu_C 17 LEQIGVSHDAQIQELSEMWR 36 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcHHHHHHHHHHHHH
Confidence 34444443333334433333
No 205
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=44.84 E-value=79 Score=22.27 Aligned_cols=58 Identities=16% Similarity=0.179 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 101 RMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLT 158 (201)
Q Consensus 101 R~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~ 158 (201)
..|-...+..+...+..|+.+-+.++.++....+.++.|..=...|-.+++..|..|.
T Consensus 21 e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkLLE 78 (84)
T 1gk4_A 21 EENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLE 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 3344556777788888888888888888888888888888888889999998887763
No 206
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=44.76 E-value=47 Score=23.28 Aligned_cols=27 Identities=26% Similarity=0.316 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 104 KQRHLDELWSHVVRLRTENHNLIDKLN 130 (201)
Q Consensus 104 Kq~~l~eLe~qV~~L~~EN~~L~~el~ 130 (201)
|...+.+|+..+..-..+.+.|+.++.
T Consensus 23 Kde~I~eLE~~L~~kd~eI~eLr~~Ld 49 (67)
T 1zxa_A 23 KEERIKELEKRLSEKEEEIQELKRKLH 49 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666665555554444444433
No 207
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=44.72 E-value=89 Score=22.83 Aligned_cols=53 Identities=17% Similarity=0.232 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 105 QRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQML 157 (201)
Q Consensus 105 q~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L 157 (201)
...+..+...+..|+.+-..++.++......+..|..-...|..+++..|..|
T Consensus 36 ~~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIatYrkLL 88 (95)
T 3mov_A 36 AKEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAYRKLL 88 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666777777777777777777777777777778888888887766
No 208
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=44.53 E-value=66 Score=26.05 Aligned_cols=20 Identities=20% Similarity=0.258 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 043159 135 SHDRVLQENARLREEASDLR 154 (201)
Q Consensus 135 ~~~~l~~EN~~Lrael~~Lr 154 (201)
++..+..|-..|+.++...|
T Consensus 114 kI~aL~~Ei~~Lr~qL~~~R 133 (175)
T 3lay_A 114 KINAVAKEMESLGQKLDEQR 133 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555554443
No 209
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=44.17 E-value=73 Score=21.66 Aligned_cols=13 Identities=23% Similarity=0.560 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHh
Q 043159 148 EEASDLRQMLTEL 160 (201)
Q Consensus 148 ael~~Lr~~L~~l 160 (201)
.++.+|++.|+.|
T Consensus 56 ~Ei~elrr~iq~L 68 (77)
T 3trt_A 56 QESTEYRRQVQSL 68 (77)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444433
No 210
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=42.72 E-value=28 Score=30.33 Aligned_cols=33 Identities=15% Similarity=0.227 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 112 WSHVVRLRTENHNLIDKLNHVSESHDRVLQENA 144 (201)
Q Consensus 112 e~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~ 144 (201)
+.+++.|+.+++.|..+++.|.+....+...|.
T Consensus 184 ~~eie~L~~~~~~L~eEi~~Le~~~e~~~k~n~ 216 (315)
T 2ve7_A 184 AFKLESLEAKNRALNEQIARLEQERSTANKANA 216 (315)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 456667777777777777777655555554443
No 211
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=42.46 E-value=1.3e+02 Score=24.10 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 130 NHVSESHDRVLQENARLREEASDLR 154 (201)
Q Consensus 130 ~~L~~~~~~l~~EN~~Lrael~~Lr 154 (201)
..+...+..|..||..+++++.-.|
T Consensus 136 ~E~MdSFE~LkvENE~vkerl~mYR 160 (167)
T 4gkw_A 136 AENMDSFEKLSMENENLKEKIAHYR 160 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhhHhHHHHHHHHH
Confidence 3444456666777777777665544
No 212
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=41.96 E-value=1.5e+02 Score=24.78 Aligned_cols=34 Identities=18% Similarity=0.161 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 043159 134 ESHDRVLQENARLREEASDLRQMLTELQLSSPYT 167 (201)
Q Consensus 134 ~~~~~l~~EN~~Lrael~~Lr~~L~~l~~~~~~~ 167 (201)
.++..+.++=..+++++..++..|....+.+|++
T Consensus 129 a~~~~~~~~l~~~~~~l~~a~~~l~~~~i~AP~~ 162 (369)
T 4dk0_A 129 AEMDVVQENIKQAEIEVNTAETNLGYTKITSPID 162 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCEEECCCC
Confidence 3333333333444455555555555555667764
No 213
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=41.64 E-value=64 Score=28.05 Aligned_cols=30 Identities=13% Similarity=0.083 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 105 QRHLDELWSHVVRLRTENHNLIDKLNHVSE 134 (201)
Q Consensus 105 q~~l~eLe~qV~~L~~EN~~L~~el~~L~~ 134 (201)
.+.++.|+.+...|+.|-++|..+...+..
T Consensus 184 ~~eie~L~~~~~~L~eEi~~Le~~~e~~~k 213 (315)
T 2ve7_A 184 AFKLESLEAKNRALNEQIARLEQERSTANK 213 (315)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 346777777777777777777666655554
No 214
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=41.47 E-value=39 Score=25.50 Aligned_cols=20 Identities=15% Similarity=0.238 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 043159 136 HDRVLQENARLREEASDLRQ 155 (201)
Q Consensus 136 ~~~l~~EN~~Lrael~~Lr~ 155 (201)
...+..+|..|..++.+|..
T Consensus 93 ~~~l~~~n~~L~~riqeLE~ 112 (118)
T 4ati_A 93 QKKLEHANRHLLLRVQELEM 112 (118)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33455666666666655543
No 215
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=41.33 E-value=1.4e+02 Score=24.05 Aligned_cols=11 Identities=45% Similarity=0.607 Sum_probs=6.1
Q ss_pred HHHHHHHHHHH
Q 043159 143 NARLREEASDL 153 (201)
Q Consensus 143 N~~Lrael~~L 153 (201)
|..|+.++..|
T Consensus 199 n~~L~~eLp~l 209 (251)
T 2fic_A 199 NVDLQEELPSL 209 (251)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555544
No 216
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=40.94 E-value=0.98 Score=34.62 Aligned_cols=40 Identities=23% Similarity=0.339 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 122 NHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 122 N~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
...|..++..|..+...|..||..|+.++..++.++..|.
T Consensus 60 ~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~lk~k~e~L~ 99 (107)
T 3a5t_A 60 KEELEKQKAELQQEVEKLASENASMKLELDALRSKYEALQ 99 (107)
T ss_dssp HHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSSSSCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555667777777777777666666655
No 217
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=40.71 E-value=1e+02 Score=28.10 Aligned_cols=30 Identities=10% Similarity=0.244 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 132 VSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 132 L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
+..+...+..+=..|.+++.++...|..+-
T Consensus 74 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (455)
T 2dq0_A 74 LLAKSREIVKRIGELENEVEELKKKIDYYL 103 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555556666666665544
No 218
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=40.56 E-value=1e+02 Score=22.30 Aligned_cols=60 Identities=8% Similarity=0.115 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159 101 RMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 101 R~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l 160 (201)
..++-..+..|..++..|+.+-..+..++..+...+......=..--+++..|.++|+-+
T Consensus 39 ~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqll 98 (101)
T 3u59_A 39 CKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444455444444444444444333332222222222334566777776654
No 219
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=40.07 E-value=16 Score=24.28 Aligned_cols=21 Identities=14% Similarity=0.117 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 043159 105 QRHLDELWSHVVRLRTENHNL 125 (201)
Q Consensus 105 q~~l~eLe~qV~~L~~EN~~L 125 (201)
..++++|+.+|..|+.....|
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888887655544
No 220
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=39.97 E-value=84 Score=21.16 Aligned_cols=44 Identities=20% Similarity=0.288 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 118 LRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 118 L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
|-.+.+.|+.++..|++++..-...=..|..+...+...|..++
T Consensus 8 L~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq 51 (54)
T 1deb_A 8 LLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQ 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHc
Confidence 33334444444444444333333333344444444444444443
No 221
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=39.84 E-value=20 Score=25.00 Aligned_cols=17 Identities=29% Similarity=0.229 Sum_probs=8.8
Q ss_pred chHHHHHHHHHHhHHHH
Q 043159 81 IIDERKQRRMISNRESA 97 (201)
Q Consensus 81 ~~deRR~RR~lsNRESA 97 (201)
..-||++|..+...-..
T Consensus 17 n~~Er~RR~~in~~f~~ 33 (80)
T 1hlo_A 17 NALERKRRDHIKDSFHS 33 (80)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 44555555555554433
No 222
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=39.79 E-value=1.1e+02 Score=22.29 Aligned_cols=25 Identities=16% Similarity=0.303 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 108 LDELWSHVVRLRTENHNLIDKLNHV 132 (201)
Q Consensus 108 l~eLe~qV~~L~~EN~~L~~el~~L 132 (201)
+.+.+.+...|+..|..|..++..|
T Consensus 51 ~~e~e~r~k~le~~n~~l~~riqEL 75 (83)
T 4ath_A 51 AKDLENRQKKLEHANRHLLLRVQEL 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 3444444444445555444444433
No 223
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=39.72 E-value=1.2e+02 Score=22.85 Aligned_cols=58 Identities=17% Similarity=0.382 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 104 KQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 104 Kq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
....+..|..+-..|...-..|..++......+..+..+-..|..++..|...|.++.
T Consensus 67 ~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e 124 (129)
T 2fxo_A 67 AEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLE 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555566666666666666666666666666666666666554
No 224
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=39.65 E-value=55 Score=19.74 Aligned_cols=24 Identities=13% Similarity=0.185 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 133 SESHDRVLQENARLREEASDLRQM 156 (201)
Q Consensus 133 ~~~~~~l~~EN~~Lrael~~Lr~~ 156 (201)
+...+.+.+.|-.-++.+..||.+
T Consensus 7 kkrvqalkarnyaakqkvqalrhk 30 (33)
T 1fmh_B 7 KKRVQALKARNYAAKQKVQALRHK 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHh
Confidence 333344455555555556555554
No 225
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=39.55 E-value=99 Score=21.89 Aligned_cols=30 Identities=30% Similarity=0.327 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 111 LWSHVVRLRTENHNLIDKLNHVSESHDRVL 140 (201)
Q Consensus 111 Le~qV~~L~~EN~~L~~el~~L~~~~~~l~ 140 (201)
|...|..|..|+..|..++..+.+.+..+.
T Consensus 2 ~~k~v~~l~~E~eel~~klk~~~ee~~~~~ 31 (71)
T 1uix_A 2 STSDVANLANEKEELNNKLKEAQEQLSRLK 31 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777777766666555443
No 226
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=39.35 E-value=1.2e+02 Score=22.72 Aligned_cols=39 Identities=13% Similarity=0.129 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 116 VRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLR 154 (201)
Q Consensus 116 ~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr 154 (201)
..++.+...|+..+..+.-....|+.+=..|++++.=|+
T Consensus 65 ~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLK 103 (119)
T 3ol1_A 65 EEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLK 103 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666555545555555666666665554
No 227
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=39.32 E-value=77 Score=20.52 Aligned_cols=27 Identities=19% Similarity=0.222 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 135 SHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 135 ~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
++..++.|=..|...+..|..+|+.+.
T Consensus 21 elaaleselqalekklaalksklqalk 47 (48)
T 1g6u_A 21 ELAALESELQALEKKLAALKSKLQALK 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345566666666666666666666553
No 228
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=38.87 E-value=1e+02 Score=21.70 Aligned_cols=43 Identities=16% Similarity=0.155 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 101 RMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQEN 143 (201)
Q Consensus 101 R~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN 143 (201)
|...+..+..|+.++..++.+-+....+...|..--..|..|=
T Consensus 7 ~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EI 49 (74)
T 2xv5_A 7 RDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEI 49 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555554444444444443
No 229
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=38.73 E-value=1e+02 Score=21.91 Aligned_cols=54 Identities=13% Similarity=0.201 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043159 109 DELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQL 162 (201)
Q Consensus 109 ~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~~ 162 (201)
.+|..+|..-+.|...|..-++.++.++..-..=|..|..+..-++..+.+++.
T Consensus 6 KeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~k 59 (74)
T 2q6q_A 6 KELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLEK 59 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHh
Confidence 355555555555666665556666666666666677777777777777777774
No 230
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=38.63 E-value=1.3e+02 Score=24.62 Aligned_cols=19 Identities=11% Similarity=0.151 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 043159 112 WSHVVRLRTENHNLIDKLN 130 (201)
Q Consensus 112 e~qV~~L~~EN~~L~~el~ 130 (201)
+..|..|+.++..|..++.
T Consensus 134 ertV~kLqkeiD~LEDeL~ 152 (175)
T 3mud_A 134 LDTTAKNEKSIDDLEEKVA 152 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 231
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=38.43 E-value=1.1e+02 Score=22.15 Aligned_cols=11 Identities=18% Similarity=0.247 Sum_probs=4.4
Q ss_pred HHHHHHHHHHh
Q 043159 150 ASDLRQMLTEL 160 (201)
Q Consensus 150 l~~Lr~~L~~l 160 (201)
+.+++++|..+
T Consensus 66 l~~ak~~L~~~ 76 (81)
T 3csx_A 66 LDQLKKKLNIW 76 (81)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444333
No 232
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=38.28 E-value=79 Score=23.00 Aligned_cols=22 Identities=14% Similarity=0.199 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 043159 135 SHDRVLQENARLREEASDLRQM 156 (201)
Q Consensus 135 ~~~~l~~EN~~Lrael~~Lr~~ 156 (201)
+...++..|..|--++.+|.-+
T Consensus 57 r~k~le~~n~~l~~riqELE~q 78 (83)
T 4ath_A 57 RQKKLEHANRHLLLRVQELEMQ 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhHHHHHHHHHHHHH
Confidence 3445788888888888777644
No 233
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=37.99 E-value=1.4e+02 Score=27.86 Aligned_cols=57 Identities=12% Similarity=0.154 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 105 QRHLDELWSHVVRLRTENHNLIDK---LNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 105 q~~l~eLe~qV~~L~~EN~~L~~e---l~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
+..+++|..+.+.+..+...++.. ...+..+...+..+=..|.+++.++...|..+-
T Consensus 46 ~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l 105 (485)
T 3qne_A 46 RFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKI 105 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444333221 223444455555555566666666666665544
No 234
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=37.66 E-value=1.4e+02 Score=23.06 Aligned_cols=54 Identities=17% Similarity=0.179 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 108 LDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 108 l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
+..||.+...|...-.+--.+-....+.......+...+++++.+.-.+|..+.
T Consensus 11 l~~LEaeyq~L~~kE~qrynqeka~AE~A~~~L~~~~~m~~~i~ek~~~i~~~~ 64 (119)
T 2avr_X 11 LQALDAEYQNLANQEEARFNEERAQADAARQALAQNEQVYNELSQRAQRLQAEA 64 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444433332333333344445555666666666666666666654
No 235
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=37.14 E-value=1.8e+02 Score=24.09 Aligned_cols=34 Identities=21% Similarity=0.306 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 110 ELWSHVVRLRTENHNLIDKLNHVSESHDRVLQEN 143 (201)
Q Consensus 110 eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN 143 (201)
+|+.++..|..+|..|...+..+..+++.+..+-
T Consensus 136 ~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K 169 (213)
T 1ik9_A 136 ENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAK 169 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555666666666555555555555554443
No 236
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=36.93 E-value=1.1e+02 Score=21.64 Aligned_cols=31 Identities=26% Similarity=0.267 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 110 ELWSHVVRLRTENHNLIDKLNHVSESHDRVL 140 (201)
Q Consensus 110 eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~ 140 (201)
+|...|..|..|+..|..++..+.+.+..+.
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~~~ 33 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKLEK 33 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777888888888888888877776665554
No 237
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=36.91 E-value=55 Score=21.80 Aligned_cols=32 Identities=22% Similarity=0.298 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 109 DELWSHVVRLRTENHNLIDKLNHVSESHDRVL 140 (201)
Q Consensus 109 ~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~ 140 (201)
..||.-|..|+..|..|...+..|...+..++
T Consensus 20 aklenivarlendnanlekdianlekdianle 51 (56)
T 3he4_A 20 AKLENIVARLENDNANLEKDIANLEKDIANLE 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 44666667777777777666666655544443
No 238
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=36.88 E-value=58 Score=18.85 Aligned_cols=20 Identities=30% Similarity=0.328 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 043159 111 LWSHVVRLRTENHNLIDKLN 130 (201)
Q Consensus 111 Le~qV~~L~~EN~~L~~el~ 130 (201)
|..+|.+|..|...|+.++.
T Consensus 5 lkdevgelkgevralkdevk 24 (27)
T 3v86_A 5 LKDEVGELKGEVRALKDEVK 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhHHHHHHHHHh
Confidence 33444444444444444433
No 239
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=36.80 E-value=59 Score=29.50 Aligned_cols=20 Identities=20% Similarity=0.358 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 043159 142 ENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 142 EN~~Lrael~~Lr~~L~~l~ 161 (201)
|...|+.++..++..+..++
T Consensus 71 ~~~~~~~e~~~~~ee~~~l~ 90 (428)
T 4b4t_K 71 EQRHLKRELKRAQEEVKRIQ 90 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 33344444555555555554
No 240
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=36.10 E-value=1.7e+02 Score=23.70 Aligned_cols=56 Identities=9% Similarity=-0.024 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 100 SRMRKQRHLDELWSHV-VRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQ 155 (201)
Q Consensus 100 SR~RKq~~l~eLe~qV-~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~ 155 (201)
-|.+.+..+......+ ..|+...+.|......+......++.+=..|...+..|..
T Consensus 28 ~~~~~~e~l~~~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~ 84 (174)
T 2p22_A 28 DVDYVADKILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTA 84 (174)
T ss_dssp HHHHHHHHTGGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444333333 3334444444444444444455555555555555555555
No 241
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=36.06 E-value=1.2e+02 Score=21.97 Aligned_cols=28 Identities=25% Similarity=0.208 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 106 RHLDELWSHVVRLRTENHNLIDKLNHVS 133 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~ 133 (201)
+.+.+|.-+|..++.|--+...++...+
T Consensus 26 qEi~~Lr~kv~elEnErlQyEkKLKsTK 53 (81)
T 3qh9_A 26 QELRHLKIKVEELENERNQYEWKLKATK 53 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 3455555555555555555444444443
No 242
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=35.30 E-value=1.2e+02 Score=21.51 Aligned_cols=54 Identities=17% Similarity=0.248 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 108 LDELWSHVVRLRTENHNLIDKLNHVSES-------HDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 108 l~eLe~qV~~L~~EN~~L~~el~~L~~~-------~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
+++|..+|..|...-.+.+..+-.|.+. +-.+.++--..-+++.+++++|..+.
T Consensus 5 i~eLkkevkKL~~~A~q~kmdLHDLaEdLP~~w~~i~~vA~~tyda~~~l~~ak~~L~~~~ 65 (71)
T 2js5_A 5 AEELKAKLKKLNAQATALKMDLHDLAEDLPTGWNRIMEVAEKTYEAYRQLDEFRKSTASLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666665555442 44455555555566667777776664
No 243
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=35.27 E-value=1.1e+02 Score=20.91 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 043159 110 ELWSHVVRLRTENHNLIDKLN 130 (201)
Q Consensus 110 eLe~qV~~L~~EN~~L~~el~ 130 (201)
.|..+|..|++||..|...++
T Consensus 14 aLkDqV~eL~qe~k~m~k~lE 34 (56)
T 2w6b_A 14 ALKDEVQELRQDNKKMKKSLE 34 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666655555443
No 244
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=35.22 E-value=1.1e+02 Score=20.97 Aligned_cols=34 Identities=12% Similarity=0.111 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 125 LIDKLNHVSESHDRVLQENARLREEASDLRQMLT 158 (201)
Q Consensus 125 L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~ 158 (201)
|+..+..|..+...|+..+..-.+++..|++.|.
T Consensus 16 LKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLk 49 (58)
T 3a2a_A 16 LKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLR 49 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444443
No 245
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=35.15 E-value=1.3e+02 Score=22.61 Aligned_cols=38 Identities=16% Similarity=0.135 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 110 ELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLR 147 (201)
Q Consensus 110 eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lr 147 (201)
.|-.+....+.|...|+.++..|+..++....--..|.
T Consensus 8 ~~~~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g 45 (125)
T 1joc_A 8 ALLERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELG 45 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555566667777777766666655444333333
No 246
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=34.57 E-value=3e+02 Score=25.99 Aligned_cols=15 Identities=20% Similarity=0.379 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHhhc
Q 043159 148 EEASDLRQMLTELQL 162 (201)
Q Consensus 148 ael~~Lr~~L~~l~~ 162 (201)
.+...|...+.+|+.
T Consensus 567 ~~~~~~~~ei~~l~~ 581 (592)
T 1f5n_A 567 KESRIMKNEIQDLQT 581 (592)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555555553
No 247
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=34.01 E-value=3.2e+02 Score=26.18 Aligned_cols=38 Identities=11% Similarity=0.104 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 124 NLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 124 ~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
+|++++..|+++++.....=+.|+.-|.+++.+|+.|.
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLE 151 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLE 151 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666655555555666667777776666665
No 248
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=33.94 E-value=86 Score=28.43 Aligned_cols=38 Identities=18% Similarity=0.212 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 110 ELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLR 154 (201)
Q Consensus 110 eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr 154 (201)
.|+.+...|..++..|+.+.. .+..|-..+++++..|+
T Consensus 53 ~le~~~~~L~~e~e~l~~~~~-------~~~~e~~~~~ee~~~l~ 90 (428)
T 4b4t_K 53 KLEKEYELLTLQEDYIKDEQR-------HLKRELKRAQEEVKRIQ 90 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHc
Confidence 344444455555444444444 44445555666665554
No 249
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=33.45 E-value=97 Score=19.97 Aligned_cols=32 Identities=13% Similarity=0.257 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 125 LIDKLNHVSESHDRVLQENARLREEASDLRQM 156 (201)
Q Consensus 125 L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~ 156 (201)
+..++..+...+..+..+=...+..+..+...
T Consensus 24 ~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~q 55 (60)
T 3htk_A 24 KTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQ 55 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333334444444333
No 250
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=32.70 E-value=1.4e+02 Score=21.70 Aligned_cols=56 Identities=16% Similarity=0.215 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 106 RHLDELWSHVVRLRTENHNLIDKLN-----HVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~el~-----~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
..+..|+.+...|..+-+.+..++. ...+++-.+..|=..+|.-...|-.+|.++.
T Consensus 8 ~~i~~L~~q~~~L~~ei~~~~a~L~~~~~~~~~~~hI~~Lh~YNeiKD~gq~L~g~iA~~r 68 (85)
T 3viq_B 8 SRVHLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLLHTYNEIRDIALGMIGKVAEHE 68 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Confidence 4455555555555555555554322 2235566777777788888888888888776
No 251
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=32.03 E-value=1.7e+02 Score=22.30 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 137 DRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 137 ~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
.+-..+=..|...+.+|.++|.+.-
T Consensus 78 ~~R~~~Vsalq~KiaeLKrqLAd~v 102 (107)
T 2k48_A 78 QNRRAAVSTLETKLGELKRQLADLV 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455667777777777776653
No 252
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=31.57 E-value=1.6e+02 Score=22.34 Aligned_cols=26 Identities=15% Similarity=0.141 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 110 ELWSHVVRLRTENHNLIDKLNHVSES 135 (201)
Q Consensus 110 eLe~qV~~L~~EN~~L~~el~~L~~~ 135 (201)
++..+|..|..++..|..++..++.+
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~ 54 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSV 54 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 253
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=31.30 E-value=3.4e+02 Score=25.62 Aligned_cols=19 Identities=21% Similarity=0.396 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 043159 139 VLQENARLREEASDLRQML 157 (201)
Q Consensus 139 l~~EN~~Lrael~~Lr~~L 157 (201)
...+...|..++..|+...
T Consensus 565 ~~~~~~~~~~ei~~l~~~~ 583 (592)
T 1f5n_A 565 FQKESRIMKNEIQDLQTKM 583 (592)
T ss_dssp CHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3455677777787777763
No 254
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=31.22 E-value=22 Score=26.81 Aligned_cols=39 Identities=15% Similarity=0.075 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 043159 103 RKQRHLDELWSHVVRLR---TENHNLIDKLNHVSESHDRVLQ 141 (201)
Q Consensus 103 RKq~~l~eLe~qV~~L~---~EN~~L~~el~~L~~~~~~l~~ 141 (201)
.|+..+++|..++..++ .....|+.++......+..-.+
T Consensus 35 ~KQ~~ideLKe~i~q~~~~~E~i~vL~aQ~~iY~~DF~aERa 76 (96)
T 3fx0_A 35 AKQEVIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERQ 76 (96)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 36677777777766666 3444455555555544443333
No 255
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=31.21 E-value=49 Score=31.14 Aligned_cols=24 Identities=13% Similarity=0.097 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 108 LDELWSHVVRLRTENHNLIDKLNH 131 (201)
Q Consensus 108 l~eLe~qV~~L~~EN~~L~~el~~ 131 (201)
..+|+.++.+++.+.......+..
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~l~~ 360 (575)
T 2i1j_A 337 QQEYQDRLRQMQEEMERSQANLLE 360 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666665555544443
No 256
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=31.12 E-value=1.4e+02 Score=22.03 Aligned_cols=26 Identities=19% Similarity=0.230 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 110 ELWSHVVRLRTENHNLIDKLNHVSES 135 (201)
Q Consensus 110 eLe~qV~~L~~EN~~L~~el~~L~~~ 135 (201)
.|+..++.|+..-..++.++..+...
T Consensus 99 ~l~~~~~~l~~~l~~l~~~i~~~~~~ 124 (133)
T 1fxk_C 99 ELESTLQKMGENLRAITDIMMKLSPQ 124 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333
No 257
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=31.07 E-value=1.7e+02 Score=27.67 Aligned_cols=35 Identities=9% Similarity=0.035 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 108 LDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQE 142 (201)
Q Consensus 108 l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~E 142 (201)
..+-+..|+..+.+|..+..+++.+++++....+.
T Consensus 29 ka~Ye~~~ae~~a~n~~i~aeNeaikkrNa~aka~ 63 (497)
T 3iox_A 29 KAAYEAAVAANNAANAALTAENTAIKKRNADAKAD 63 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666666666666555554444
No 258
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=30.75 E-value=1.3e+02 Score=27.10 Aligned_cols=15 Identities=33% Similarity=0.497 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 043159 145 RLREEASDLRQMLTE 159 (201)
Q Consensus 145 ~Lrael~~Lr~~L~~ 159 (201)
.|.+++.++...|..
T Consensus 86 ~~~~~~~~~~~~~~~ 100 (425)
T 2dq3_A 86 RLEEELRKVEEELKN 100 (425)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333343444433
No 259
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=30.74 E-value=1.7e+02 Score=22.18 Aligned_cols=24 Identities=17% Similarity=0.069 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 107 HLDELWSHVVRLRTENHNLIDKLN 130 (201)
Q Consensus 107 ~l~eLe~qV~~L~~EN~~L~~el~ 130 (201)
++++|+.++..|+.....|...+.
T Consensus 89 ~~~~l~~~i~~L~~~~~~L~~~i~ 112 (142)
T 3gp4_A 89 QRIELKNRIDVMQEALDRLDFKID 112 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444433333333
No 260
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=30.47 E-value=2.8e+02 Score=26.60 Aligned_cols=50 Identities=14% Similarity=0.175 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 101 RMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEA 150 (201)
Q Consensus 101 R~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael 150 (201)
...+.++.++|++++..|+.+...-...|..|+..+..++.+=.+|...+
T Consensus 105 dNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 105 DNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666678888887777776666777777766666666666665544
No 261
>1tu3_F RAB GTPase binding effector protein 1; rabaptin5, effector-binding, protein transport; HET: GNP; 2.31A {Homo sapiens} SCOP: h.1.27.2
Probab=30.13 E-value=27 Score=25.32 Aligned_cols=34 Identities=18% Similarity=0.335 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCC
Q 043159 145 RLREEASDLRQMLTELQLSSPYTNASLRDLGEVP 178 (201)
Q Consensus 145 ~Lrael~~Lr~~L~~l~~~~~~~~~~~~~~~~~p 178 (201)
.|..+++++|+.=..=+...-.+-..++||.++|
T Consensus 44 sLQvqLE~IRqadt~~qvr~Il~e~~l~di~~~~ 77 (79)
T 1tu3_F 44 TLQVQLERIRQADSLERIRAILNDTKLTDINQLP 77 (79)
T ss_dssp HHHHHHHHHHTCCSHHHHHHHTC-----------
T ss_pred HHHHHHHHHHhhhhHHHHHHHHccCccchHhhCC
Confidence 6666777776422111111111113456666665
No 262
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=29.96 E-value=2e+02 Score=26.80 Aligned_cols=13 Identities=31% Similarity=0.350 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 043159 146 LREEASDLRQMLT 158 (201)
Q Consensus 146 Lrael~~Lr~~L~ 158 (201)
|.+++.++...|.
T Consensus 123 le~~~~~~~~~~~ 135 (484)
T 3lss_A 123 LAKEAQQLEEERD 135 (484)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333334444443
No 263
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=29.96 E-value=1.1e+02 Score=21.34 Aligned_cols=39 Identities=10% Similarity=0.078 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENA 144 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~ 144 (201)
.+.+++..++..|+.|..-.-.++..+.--|+..+.++.
T Consensus 16 ~Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q~~e~e~~ 54 (75)
T 3mtu_A 16 LDKENALDRAEQAEADKDFYFGKLRNIELICQENEGEND 54 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTC
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhH
Confidence 355566666666666666555566666555555444443
No 264
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=29.66 E-value=49 Score=27.51 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043159 106 RHLDELWSHVVRLRTENHNLIDK 128 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~e 128 (201)
..+.+|+++..+|+.||+.|.++
T Consensus 161 ~~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 161 DTIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555565555555543
No 265
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=29.54 E-value=2.5e+02 Score=25.76 Aligned_cols=38 Identities=13% Similarity=0.144 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 124 NLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 124 ~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
.|..++..|++....-...=+.|+.-|.+++-+++.|.
T Consensus 117 eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE 154 (390)
T 1deq_A 117 DLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLE 154 (390)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555554444444556666666666665554
No 266
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=29.53 E-value=92 Score=19.22 Aligned_cols=18 Identities=17% Similarity=0.215 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 043159 112 WSHVVRLRTENHNLIDKL 129 (201)
Q Consensus 112 e~qV~~L~~EN~~L~~el 129 (201)
...+++|+.+|..|..++
T Consensus 13 qqDIddlkrQN~~Le~Qi 30 (34)
T 1a93_B 13 QQDIDDLKRQNALLEQQV 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHH
Confidence 334444445554444444
No 267
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=29.49 E-value=2.4e+02 Score=26.18 Aligned_cols=57 Identities=12% Similarity=0.049 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhh
Q 043159 105 QRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQEN-----ARLREEASDLRQMLTELQ 161 (201)
Q Consensus 105 q~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN-----~~Lrael~~Lr~~L~~l~ 161 (201)
+..+.+++.++..+.....+...+++.....+..+...+ ..|+..+..|+.+|..|.
T Consensus 127 q~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~~~~~~i~~L~~~~~~l~~ki~~l~ 188 (464)
T 1m1j_B 127 DNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNLDNNIPSSLRVLRAVIDSLHKKIQKLE 188 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHH
No 268
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=29.44 E-value=1.2e+02 Score=23.02 Aligned_cols=38 Identities=18% Similarity=0.263 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 107 HLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 107 ~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
.+.+|+.+|+.++..+++|+.-.. +...+.|..+..+-
T Consensus 5 e~~~l~~qi~~~ekr~~RLKevF~-----------------~ks~eFReav~~Ll 42 (123)
T 4dzo_A 5 EVAELKKQVESAELKNQRLKEVFQ-----------------TKIQEFRKACYTLT 42 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHh
Confidence 455566666655555555444332 34566666666653
No 269
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=29.33 E-value=66 Score=20.32 Aligned_cols=20 Identities=25% Similarity=0.428 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 043159 106 RHLDELWSHVVRLRTENHNL 125 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L 125 (201)
.++..|+.++..|+.|.++|
T Consensus 15 eQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 15 EQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 270
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=29.23 E-value=1.5e+02 Score=20.92 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 106 RHLDELWSHVVRLRTENHNLIDKLNHV 132 (201)
Q Consensus 106 ~~l~eLe~qV~~L~~EN~~L~~el~~L 132 (201)
..+..|+.++..++.+-+....+...|
T Consensus 35 ~~i~~lE~el~~~r~e~~~ql~EYq~L 61 (86)
T 1x8y_A 35 RLLAEKEREMAEMRARMQQQLDEYQEL 61 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433333333
No 271
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=27.37 E-value=2.4e+02 Score=22.54 Aligned_cols=45 Identities=20% Similarity=0.262 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 111 LWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQ 155 (201)
Q Consensus 111 Le~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~ 155 (201)
|+.++.....+...|..++..-......++.+...+..++.+|..
T Consensus 49 l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTa 93 (154)
T 2ocy_A 49 LKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTA 93 (154)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444443333334444444444444444443
No 272
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=27.33 E-value=36 Score=26.12 Aligned_cols=20 Identities=20% Similarity=0.375 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 043159 131 HVSESHDRVLQENARLREEA 150 (201)
Q Consensus 131 ~L~~~~~~l~~EN~~Lrael 150 (201)
.|..++.+|.-||..||.++
T Consensus 12 eLaaeL~kLqmENK~LKkkl 31 (110)
T 2oa5_A 12 EMVKEVERLKLENKTLKQKV 31 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555555443
No 273
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=27.18 E-value=3.1e+02 Score=25.45 Aligned_cols=19 Identities=16% Similarity=0.331 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 043159 143 NARLREEASDLRQMLTELQ 161 (201)
Q Consensus 143 N~~Lrael~~Lr~~L~~l~ 161 (201)
-..|++++.+|...+..+.
T Consensus 113 ~~~l~~~i~~le~~~~~~~ 131 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLE 131 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555554
No 274
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=27.02 E-value=35 Score=22.77 Aligned_cols=26 Identities=23% Similarity=0.450 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 136 HDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 136 ~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
..+++..|.-|...+..|..-+..+.
T Consensus 26 varlendnanlekdianlekdianle 51 (56)
T 3he4_A 26 VARLENDNANLEKDIANLEKDIANLE 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccchHHHHHHHHHHHHHHHH
Confidence 34566777777777777776666553
No 275
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=26.99 E-value=2.2e+02 Score=22.10 Aligned_cols=56 Identities=11% Similarity=0.144 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 043159 108 LDELWSHVVRLRT-ENHNLIDKLNHVS--------ESHDRVLQENARLREEASDLRQMLTELQLS 163 (201)
Q Consensus 108 l~eLe~qV~~L~~-EN~~L~~el~~L~--------~~~~~l~~EN~~Lrael~~Lr~~L~~l~~~ 163 (201)
++.|+.+++.|.. +-..+...+...+ ..++....+-..+..++..|..+|...++-
T Consensus 11 ~~~L~~EL~~L~~~~R~~i~~~i~~Ar~~GDlsENaeY~aak~~q~~~e~rI~~L~~~L~~A~vi 75 (158)
T 2p4v_A 11 YEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCMENLKIV 75 (158)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEC
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhCeec
Confidence 4455666666633 3444444444433 235555666778888899999999888753
No 276
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=26.58 E-value=3.2e+02 Score=23.84 Aligned_cols=15 Identities=27% Similarity=0.426 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 043159 145 RLREEASDLRQMLTE 159 (201)
Q Consensus 145 ~Lrael~~Lr~~L~~ 159 (201)
+|..++.+|.++|.+
T Consensus 447 ~~~~~~~~~~~~~~~ 461 (471)
T 3mq9_A 447 ELEGEITTLNHKLQD 461 (471)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 277
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=26.53 E-value=1.4e+02 Score=19.67 Aligned_cols=35 Identities=11% Similarity=0.100 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 124 NLIDKLNHVSESHDRVLQENARLREEASDLRQMLT 158 (201)
Q Consensus 124 ~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~ 158 (201)
.|+.-+..|..+...+..-...+.+++..|++.|.
T Consensus 8 kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLk 42 (48)
T 3vmx_A 8 RLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLK 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444443
No 278
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=26.28 E-value=1.5e+02 Score=21.10 Aligned_cols=36 Identities=22% Similarity=0.231 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043159 127 DKLNHVSESHDRVLQENARLREEASDLRQMLTELQL 162 (201)
Q Consensus 127 ~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~~ 162 (201)
..+..+...+..+..|=.-++..+.++...++.|+.
T Consensus 8 nsVk~~eT~iaa~~~ev~t~~~~l~~~e~~vqaL~~ 43 (74)
T 1avy_A 8 NKIKAIETDIASVRQEVNTAKGNISSLQGDVQALQE 43 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhcccccchhhhheeeccccchhhhhhhhhHHHHh
Confidence 344444445556666667788889999999999885
No 279
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=26.23 E-value=1.1e+02 Score=21.42 Aligned_cols=22 Identities=14% Similarity=0.160 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 043159 136 HDRVLQENARLREEASDLRQML 157 (201)
Q Consensus 136 ~~~l~~EN~~Lrael~~Lr~~L 157 (201)
+..-..|...|+.++.+++..+
T Consensus 34 L~~kd~eI~eLr~~LdK~qsVl 55 (67)
T 1zxa_A 34 LSEKEEEIQELKRKLHKCQSVL 55 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3334444444444444444433
No 280
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=26.18 E-value=1.9e+02 Score=23.93 Aligned_cols=6 Identities=17% Similarity=0.606 Sum_probs=3.1
Q ss_pred cCCCCC
Q 043159 162 LSSPYT 167 (201)
Q Consensus 162 ~~~~~~ 167 (201)
+.+|++
T Consensus 156 i~AP~~ 161 (341)
T 3fpp_A 156 IVAPMA 161 (341)
T ss_dssp EECSSS
T ss_pred EECCCC
Confidence 445653
No 281
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.89 E-value=70 Score=29.11 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 136 HDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 136 ~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
...+..|+..|+.++.+++.++..++
T Consensus 48 ~~r~~~e~~~~~~~~~~~~~~i~~~~ 73 (434)
T 4b4t_M 48 LQRLSHENNVMLEKIKDNKEKIKNNR 73 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33455556666666666666665544
No 282
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=25.59 E-value=2e+02 Score=25.78 Aligned_cols=19 Identities=32% Similarity=0.373 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 043159 142 ENARLREEASDLRQMLTEL 160 (201)
Q Consensus 142 EN~~Lrael~~Lr~~L~~l 160 (201)
+=..|.+++.++...|..+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~ 97 (421)
T 1ses_A 79 EAKRLEEALREKEARLEAL 97 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433
No 283
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=25.43 E-value=1.6e+02 Score=21.20 Aligned_cols=13 Identities=23% Similarity=0.391 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHH
Q 043159 147 REEASDLRQMLTE 159 (201)
Q Consensus 147 rael~~Lr~~L~~ 159 (201)
+.+...|..++.+
T Consensus 94 ~~q~~~L~~kf~e 106 (127)
T 1ez3_A 94 KTQHSTLSRKFVE 106 (127)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444455555443
No 284
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=25.38 E-value=3e+02 Score=23.13 Aligned_cols=20 Identities=25% Similarity=0.513 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 043159 108 LDELWSHVVRLRTENHNLID 127 (201)
Q Consensus 108 l~eLe~qV~~L~~EN~~L~~ 127 (201)
++.|+.++..|+.+|..|+.
T Consensus 124 ie~l~eEi~~LkeEn~eLke 143 (209)
T 2wvr_A 124 IEQKDNEIARLKKENKELAE 143 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555554433
No 285
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=25.07 E-value=1.5e+02 Score=25.34 Aligned_cols=54 Identities=13% Similarity=0.129 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043159 109 DELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQL 162 (201)
Q Consensus 109 ~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~~ 162 (201)
++|-++|+.++.....|..+++.+.+..+..+..=..+...+.+|...+..-++
T Consensus 2 e~lnsRvd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~iRr~NI 55 (233)
T 2yko_A 2 ASLRSRCDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDYVKRPNL 55 (233)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEE
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccce
Confidence 344444444444444444555544444444444444555556666666655553
No 286
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=25.03 E-value=1.8e+02 Score=23.30 Aligned_cols=57 Identities=21% Similarity=0.303 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhh
Q 043159 105 QRHLDELWSHVVRLRTENHN-LIDKLNHVSESHDRVLQE-NARLREEASDLRQMLTELQ 161 (201)
Q Consensus 105 q~~l~eLe~qV~~L~~EN~~-L~~el~~L~~~~~~l~~E-N~~Lrael~~Lr~~L~~l~ 161 (201)
++.+++|..++.....|-.. +...++.++.++.-...| -..|...+.+|+.+|.-+.
T Consensus 105 ~kdlEelr~kL~P~~eEL~~~l~~~~Eelr~~L~Py~eelr~kl~~~~eeLr~~l~P~~ 163 (191)
T 1nfn_A 105 GADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLAVYQ 163 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhHHHH
Confidence 55666666666555544332 222222444444444443 4556666777777776554
No 287
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=24.79 E-value=3.6e+02 Score=23.70 Aligned_cols=77 Identities=17% Similarity=0.164 Sum_probs=50.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159 89 RMISNRESARRSRMRKQRHLDELWSHVVRLRT------ENHNLI--DKLNHVSESHDRVLQENARLREEASDLRQMLTEL 160 (201)
Q Consensus 89 R~lsNRESARRSR~RKq~~l~eLe~qV~~L~~------EN~~L~--~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l 160 (201)
+...-=+-+++.=..|.+.+++|+..+..-+. +...|. .-+....+....+...-+.|.++..-|.++|..+
T Consensus 313 ~~~~~l~~~~~~~~~k~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~q~~~~~~~~~~~ 392 (406)
T 4dyl_A 313 SVTDELAVATEMVFRRQEMVTQLQQELRNEEENTHPRERVQLLGKRQVLQEALQGLQVALCSQAKLQAQQELLQTKLEHL 392 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 34444445666667788888888877765533 111122 1233445567778888999999999999999999
Q ss_pred hcCCC
Q 043159 161 QLSSP 165 (201)
Q Consensus 161 ~~~~~ 165 (201)
+...|
T Consensus 393 ~~~~~ 397 (406)
T 4dyl_A 393 GPGEP 397 (406)
T ss_dssp TTSCC
T ss_pred CCCCC
Confidence 85433
No 288
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=24.61 E-value=1.2e+02 Score=18.05 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043159 109 DELWSHVVRLRTENHNLIDKLNH 131 (201)
Q Consensus 109 ~eLe~qV~~L~~EN~~L~~el~~ 131 (201)
+.|+.++..|+..-+.|..+++.
T Consensus 4 ealekkcaalesklqalekklea 26 (31)
T 3ljm_A 4 EALEKKCAALESKLQALEKKLEA 26 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555565555555555554443
No 289
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=24.17 E-value=2.2e+02 Score=21.15 Aligned_cols=18 Identities=22% Similarity=0.215 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 043159 135 SHDRVLQENARLREEASD 152 (201)
Q Consensus 135 ~~~~l~~EN~~Lrael~~ 152 (201)
....+...|..|++++.+
T Consensus 77 e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 77 EKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 344445555555555543
No 290
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=24.13 E-value=1.6e+02 Score=19.32 Aligned_cols=14 Identities=29% Similarity=0.515 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 043159 114 HVVRLRTENHNLID 127 (201)
Q Consensus 114 qV~~L~~EN~~L~~ 127 (201)
++..|...|-+|.+
T Consensus 11 kiarlkkdnlqler 24 (52)
T 3he5_B 11 KIARLKKDNLQLER 24 (52)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhh
Confidence 34444444444433
No 291
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=23.02 E-value=1.8e+02 Score=21.65 Aligned_cols=50 Identities=12% Similarity=0.291 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043159 113 SHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQL 162 (201)
Q Consensus 113 ~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~~ 162 (201)
.+|..|+.+..-...-...=+..-..+..|...|..++..|++.+..++.
T Consensus 40 E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~L~~ 89 (94)
T 3jsv_C 40 ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKLKV 89 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555544455556666677777777777777666653
No 292
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=22.92 E-value=1.9e+02 Score=22.81 Aligned_cols=18 Identities=17% Similarity=0.213 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 043159 103 RKQRHLDELWSHVVRLRT 120 (201)
Q Consensus 103 RKq~~l~eLe~qV~~L~~ 120 (201)
+=.++++++..++.-+..
T Consensus 86 ~l~kdlee~r~~l~P~~~ 103 (185)
T 3r2p_A 86 EMSKDLEEVKAKVQPYLD 103 (185)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 334455555554444333
No 293
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=22.65 E-value=2e+02 Score=23.52 Aligned_cols=34 Identities=21% Similarity=0.375 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 97 ARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLN 130 (201)
Q Consensus 97 ARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~ 130 (201)
|=|+-.+-++.++.||.++.....++..+..++.
T Consensus 133 AertV~kLqkeiD~LEDeL~~eKek~k~i~~eLD 166 (175)
T 3mud_A 133 CLDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLD 166 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555666666666666655555555544
No 294
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=22.40 E-value=82 Score=23.27 Aligned_cols=25 Identities=12% Similarity=0.155 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 043159 138 RVLQENARLREEASDLRQMLTELQL 162 (201)
Q Consensus 138 ~l~~EN~~Lrael~~Lr~~L~~l~~ 162 (201)
++..+...|+.++..++..|..++.
T Consensus 11 ~l~~~~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 11 QLEDKVEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3556666777777777777777774
No 295
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=21.90 E-value=1.7e+02 Score=19.05 Aligned_cols=20 Identities=15% Similarity=0.209 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 043159 97 ARRSRMRKQRHLDELWSHVV 116 (201)
Q Consensus 97 ARRSR~RKq~~l~eLe~qV~ 116 (201)
|-||=.|-++.++.||.++.
T Consensus 10 AERsV~KLek~ID~LEdeL~ 29 (52)
T 2z5i_A 10 LENEVARLKKLVDDLEDELY 29 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333
No 296
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=21.42 E-value=2.7e+02 Score=21.03 Aligned_cols=34 Identities=6% Similarity=0.110 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 111 LWSHVVRLRTENHNLIDKLNHVSESHDRVLQENA 144 (201)
Q Consensus 111 Le~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~ 144 (201)
|..++.....+...|..++..++..+..++.|-.
T Consensus 9 l~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERD 42 (106)
T 4e61_A 9 IQAELTKSQETIGSLNEEIEQYKGTVSTLEIERE 42 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444555555555555555443
No 297
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=21.37 E-value=2.8e+02 Score=21.25 Aligned_cols=28 Identities=7% Similarity=0.101 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 043159 136 HDRVLQENARLREEASDLRQMLTELQLS 163 (201)
Q Consensus 136 ~~~l~~EN~~Lrael~~Lr~~L~~l~~~ 163 (201)
+.+-..+=..|...+.+|.++|.+.-..
T Consensus 64 l~~R~~~Vs~lq~KiaeLKrqLAd~va~ 91 (113)
T 4fi5_A 64 LTDREGVAVSIQAKIDELKRQLADRIAT 91 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555667888888888888877643
No 298
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=21.23 E-value=3.7e+02 Score=22.65 Aligned_cols=28 Identities=7% Similarity=0.035 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 108 LDELWSHVVRLRTENHNLIDKLNHVSES 135 (201)
Q Consensus 108 l~eLe~qV~~L~~EN~~L~~el~~L~~~ 135 (201)
+.+|+.++..|+.+...+..++..+...
T Consensus 228 l~~l~~~i~~l~~~l~~~~~~l~~~~~~ 255 (357)
T 3rrk_A 228 AARMKERARLAPEELVGIREEVARLSRE 255 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444433
No 299
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=21.16 E-value=1.5e+02 Score=17.90 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043159 111 LWSHVVRLRTENHNLIDKLNHVS 133 (201)
Q Consensus 111 Le~qV~~L~~EN~~L~~el~~L~ 133 (201)
||+.|..|..-.++|..++..|.
T Consensus 4 lee~~r~l~~ivq~lq~r~drle 26 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDRLE 26 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555556555555555555443
No 300
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=21.08 E-value=1.6e+02 Score=21.87 Aligned_cols=33 Identities=15% Similarity=0.169 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 108 LDELWSHVVRLRTENHNLIDKLNHVSESHDRVL 140 (201)
Q Consensus 108 l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~ 140 (201)
+..|..++..|..+-+.|-..+..+++++..+.
T Consensus 8 ~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lt 40 (106)
T 2aze_B 8 LEGLTQDLRQLQESEQQLDHLMNICTTQLRLLS 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445556666666666666555555555555444
No 301
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=20.78 E-value=2.2e+02 Score=22.81 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 88 RRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHN 124 (201)
Q Consensus 88 RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~ 124 (201)
+++..-|.-.+.+-++|+++|.+|..|...++.--++
T Consensus 8 ~~Le~Ek~~~~~rI~~K~~~LqeL~~Q~vafknLv~R 44 (155)
T 2aze_A 8 QNLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQR 44 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 302
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=20.72 E-value=2.3e+02 Score=20.09 Aligned_cols=49 Identities=20% Similarity=0.334 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 113 SHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 113 ~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
.++..|..-...|+.++....+-...|+.++..++.-+.+|...+.+-.
T Consensus 17 ~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~k~~~d~~ 65 (74)
T 2q6q_A 17 NEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLEKKLSDAN 65 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhccccc
Confidence 3444444444455566666666667788888888888888887776544
No 303
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=20.60 E-value=2.1e+02 Score=19.49 Aligned_cols=15 Identities=7% Similarity=0.291 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q 043159 125 LIDKLNHVSESHDRV 139 (201)
Q Consensus 125 L~~el~~L~~~~~~l 139 (201)
+..++..|...+..|
T Consensus 83 i~~~l~~l~~rw~~L 97 (119)
T 3uun_A 83 VQEQMNLLNSRWECL 97 (119)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444444
No 304
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=20.12 E-value=2.4e+02 Score=19.98 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 043159 109 DELWSHVVRLRTENHNLIDKLNHV 132 (201)
Q Consensus 109 ~eLe~qV~~L~~EN~~L~~el~~L 132 (201)
.+|..++..+..+|..|..++..+
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~ 26 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNL 26 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 445555555555555554444433
No 305
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=20.11 E-value=3.4e+02 Score=21.75 Aligned_cols=18 Identities=11% Similarity=0.217 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 043159 145 RLREEASDLRQMLTELQL 162 (201)
Q Consensus 145 ~Lrael~~Lr~~L~~l~~ 162 (201)
+|..+..+.+.++..-++
T Consensus 128 qL~~~R~k~~~em~KeGi 145 (175)
T 3lay_A 128 KLDEQRVKRDVAMAQAGI 145 (175)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhCC
Confidence 445555666667765554
No 306
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=20.08 E-value=2e+02 Score=21.30 Aligned_cols=27 Identities=11% Similarity=0.055 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159 135 SHDRVLQENARLREEASDLRQMLTELQ 161 (201)
Q Consensus 135 ~~~~l~~EN~~Lrael~~Lr~~L~~l~ 161 (201)
++..|..+-+.|-..+..+++.|..+.
T Consensus 14 El~~L~~~E~~LD~~i~~~~~~l~~lt 40 (106)
T 2aze_B 14 DLRQLQESEQQLDHLMNICTTQLRLLS 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344444444444444444444443
Done!