Query 043160
Match_columns 333
No_of_seqs 167 out of 1991
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 23:50:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043160.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043160hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.9 1.1E-09 3.8E-14 84.2 4.5 69 258-326 35-105 (137)
2 3b5d_A Multidrug transporter E 98.8 5.4E-08 1.9E-12 72.1 12.2 100 10-152 3-103 (110)
3 2i68_A Protein EMRE; transmemb 98.8 1.3E-08 4.4E-13 78.2 8.7 70 78-153 34-104 (137)
4 3b5d_A Multidrug transporter E 98.7 2.4E-08 8E-13 74.1 6.5 70 258-327 35-106 (110)
5 2l2t_A Receptor tyrosine-prote 44.6 16 0.00053 21.4 2.3 16 315-330 26-41 (44)
6 2ks1_B Epidermal growth factor 37.5 22 0.00075 20.8 2.1 6 321-326 33-38 (44)
7 2jwa_A Receptor tyrosine-prote 24.5 25 0.00086 20.5 0.9 8 325-332 36-43 (44)
8 1pw4_A Glycerol-3-phosphate tr 11.3 7.2E+02 0.025 21.2 20.9 18 110-127 195-212 (451)
9 1q90_R Cytochrome B6-F complex 8.5 3.6E+02 0.012 15.9 3.3 36 65-100 6-41 (49)
10 2hac_A T-cell surface glycopro 7.6 3.3E+02 0.011 14.6 2.5 18 111-128 13-30 (33)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.89 E-value=1.1e-09 Score=84.18 Aligned_cols=69 Identities=17% Similarity=0.382 Sum_probs=52.8
Q ss_pred HHHH-HHHHHHHHHHHHhhcCceeeeec-cchhHHHHHHHHHHHhccccchhhhHHHHHHHhhhhhheecC
Q 043160 258 GGFV-SCTAYFIMGWLMKRKGPVFVSSF-NPLSMVIIAILGSFFIAEELFLGRIVGAIVIVIGLYMVLWGR 326 (333)
Q Consensus 258 ~~~~-~~~~~~~~~~a~~~~~~~~~~~~-~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~ 326 (333)
++++ .+++++++.+++++.+++.+.++ ..+.|+++.+++++++||++++.+++|+++|++|+++....+
T Consensus 35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4556 99999999999999999999998 899999999999999999999999999999999999987644
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.84 E-value=5.4e-08 Score=72.13 Aligned_cols=100 Identities=17% Similarity=0.255 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 043160 10 PYLGVIFMQFCSSIMSIITKIALTQGMSQHVLVAYRMVVATSLIAPFAIVLERKTRPKMTFRIFAKIALLGLFEPVIGQN 89 (333)
Q Consensus 10 ~~l~~~~~~~~~~~~~~~~k~~l~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 89 (333)
.+++.+++.++-.......|.. + +.. + .++. +.+.+....++.
T Consensus 3 ~~l~l~~a~~~e~~~~~~lK~s-~-~~~---------------------------------~-~~~~-~~~~~~~~~~~~ 45 (110)
T 3b5d_A 3 PYIYLGGAILAEVIGTTLMKFS-E-GFT---------------------------------R-LWPS-VGTIICYCASFW 45 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-c-Ccc---------------------------------h-HHHH-HHHHHHHHHHHH
Confidence 4677777777777777777765 2 111 1 1222 455666688999
Q ss_pred HHHHHhcccchhhHHHh-hchHHHHHHHHHHHHhccccceecccchhhHHHHHHHHHHHHHHHH
Q 043160 90 LYFTGLKCSTATFTVAM-CNILPALTFLMAWIFRLEKVKIKSMRSQAKILGTIVTAGGAMCMTL 152 (333)
Q Consensus 90 ~~~~al~~~~~~~~~~l-~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~ 152 (333)
++.+++++.|.+.+.++ ..+.|+++.+++++++||++|..+ ++|+.+++.|++++..
T Consensus 46 ~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~------~~Gi~lIi~Gv~~l~~ 103 (110)
T 3b5d_A 46 LLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPA------IIGMMLICAGVLIINL 103 (110)
T ss_pred HHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHhc
Confidence 99999999999999998 799999999999999999999997 9999999999999863
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.83 E-value=1.3e-08 Score=78.20 Aligned_cols=70 Identities=17% Similarity=0.266 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHhcccchhhHHHh-hchHHHHHHHHHHHHhccccceecccchhhHHHHHHHHHHHHHHHHh
Q 043160 78 LLGLFEPVIGQNLYFTGLKCSTATFTVAM-CNILPALTFLMAWIFRLEKVKIKSMRSQAKILGTIVTAGGAMCMTLL 153 (333)
Q Consensus 78 ~~g~~~~~~~~~~~~~al~~~~~~~~~~l-~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~ 153 (333)
+.+++..+++++++.+++++.|++.+..+ .++.|+++++++++++||+++..+ ++|++++++|++++...
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~------~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPA------IIGMMLICAGVLIINLL 104 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------C------HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHhcC
Confidence 46666679999999999999999999998 899999999999999999999998 99999999999998753
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.71 E-value=2.4e-08 Score=74.11 Aligned_cols=70 Identities=17% Similarity=0.375 Sum_probs=64.3
Q ss_pred HHHH-HHHHHHHHHHHHhhcCceeeeec-cchhHHHHHHHHHHHhccccchhhhHHHHHHHhhhhhheecCC
Q 043160 258 GGFV-SCTAYFIMGWLMKRKGPVFVSSF-NPLSMVIIAILGSFFIAEELFLGRIVGAIVIVIGLYMVLWGRS 327 (333)
Q Consensus 258 ~~~~-~~~~~~~~~~a~~~~~~~~~~~~-~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~ 327 (333)
.+++ ...++.++.+++|+.+.+.+.++ ..+.|+++.+.+++++||++++.+++|.++|++|++.....++
T Consensus 35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~~ 106 (110)
T 3b5d_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLSR 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 4555 88999999999999999999888 8999999999999999999999999999999999999877653
No 5
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=44.56 E-value=16 Score=21.42 Aligned_cols=16 Identities=6% Similarity=0.123 Sum_probs=6.3
Q ss_pred HHhhhhhheecCCCCC
Q 043160 315 IVIGLYMVLWGRSKDQ 330 (333)
Q Consensus 315 i~~g~~~~~~~~~~~~ 330 (333)
+..+.+++.+++++++
T Consensus 26 i~~~~~~~~RRRr~~~ 41 (44)
T 2l2t_A 26 VGLTFAVYVRRKSIKK 41 (44)
T ss_dssp HHHHHHHHHHTTCSSC
T ss_pred HHHHHHHHhhhhhhhh
Confidence 3333344444443333
No 6
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=37.54 E-value=22 Score=20.79 Aligned_cols=6 Identities=17% Similarity=0.435 Sum_probs=2.2
Q ss_pred hheecC
Q 043160 321 MVLWGR 326 (333)
Q Consensus 321 ~~~~~~ 326 (333)
++.+++
T Consensus 33 ~~~RRr 38 (44)
T 2ks1_B 33 LFMRRR 38 (44)
T ss_dssp HHHHTT
T ss_pred HHhhhh
Confidence 333333
No 7
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=24.47 E-value=25 Score=20.52 Aligned_cols=8 Identities=13% Similarity=0.194 Sum_probs=3.1
Q ss_pred cCCCCCCC
Q 043160 325 GRSKDQSP 332 (333)
Q Consensus 325 ~~~~~~~~ 332 (333)
++++++++
T Consensus 36 RRR~~~~k 43 (44)
T 2jwa_A 36 KRRQQKIR 43 (44)
T ss_dssp HHHCSCCC
T ss_pred ehhhhhcc
Confidence 33333343
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=11.26 E-value=7.2e+02 Score=21.22 Aligned_cols=18 Identities=17% Similarity=0.200 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHhccccc
Q 043160 110 LPALTFLMAWIFRLEKVK 127 (333)
Q Consensus 110 ~pi~~~ll~~~~~~e~~~ 127 (333)
..+...++..++.+|+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 195 CAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp HHHHHHHHHHHHCCCSST
T ss_pred HHHHHHHHHHhhccCCHh
Confidence 334444555566666543
No 9
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=8.55 E-value=3.6e+02 Score=15.91 Aligned_cols=36 Identities=19% Similarity=0.027 Sum_probs=21.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccch
Q 043160 65 RPKMTFRIFAKIALLGLFEPVIGQNLYFTGLKCSTA 100 (333)
Q Consensus 65 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~ 100 (333)
.+.++||++...+..|.........++=+.--.+++
T Consensus 6 ~pdm~RRqfln~l~~G~~a~~a~~~~~P~v~ffvpP 41 (49)
T 1q90_R 6 VPDMNKRNIMNLILAGGAGLPITTLALGYGAFFVPP 41 (49)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHhhheeecCC
Confidence 356678888888877777644444444333333343
No 10
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=7.65 E-value=3.3e+02 Score=14.62 Aligned_cols=18 Identities=11% Similarity=0.030 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHhccccce
Q 043160 111 PALTFLMAWIFRLEKVKI 128 (333)
Q Consensus 111 pi~~~ll~~~~~~e~~~~ 128 (333)
-+...++..++.+||++.
T Consensus 13 ~iYgii~T~Ly~R~K~~~ 30 (33)
T 2hac_A 13 FIYGVILTALFLRVKFSR 30 (33)
T ss_dssp HHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 344456666677777664
Done!