Query 043160
Match_columns 333
No_of_seqs 167 out of 1991
Neff 9.7
Searched_HMMs 13730
Date Mon Mar 25 23:50:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043160.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/043160hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 15.7 60 0.0043 14.9 2.8 18 184-201 2-19 (27)
2 d1q90r_ f.23.12.1 (R:) ISP sub 11.6 1.1E+02 0.0081 15.8 3.3 29 66-94 5-33 (39)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 8.5 4.2E+02 0.03 20.4 21.4 17 109-125 191-207 (447)
4 d1rh5b_ f.23.28.1 (B:) Preprot 7.0 89 0.0065 17.7 1.3 26 124-149 16-41 (56)
5 d1v54m_ f.23.7.1 (M:) Mitochon 5.5 1.8E+02 0.013 15.4 1.9 22 123-149 7-28 (43)
6 d2axtt1 f.23.34.1 (T:1-30) Pho 4.7 2.1E+02 0.016 13.1 2.0 8 297-304 20-27 (30)
7 d1u7ga_ f.44.1.1 (A:) Ammonium 3.2 9.9E+02 0.072 18.7 21.1 26 76-101 198-223 (383)
8 d1wpga4 f.33.1.1 (A:1-124,A:24 2.0 1.4E+03 0.11 17.8 13.8 65 34-98 263-337 (472)
9 d1gl4a1 d.22.1.2 (A:399-631) D 2.0 3.1E+02 0.022 20.4 0.9 37 92-129 42-78 (233)
10 d3cx5d2 f.23.11.1 (D:261-307) 1.9 6.4E+02 0.047 13.3 2.7 29 2-30 2-30 (47)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=15.71 E-value=60 Score=14.89 Aligned_cols=18 Identities=11% Similarity=0.335 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 043160 184 TKGALMIAAGCFSWSCFI 201 (333)
Q Consensus 184 ~~G~~~~l~a~~~~a~~~ 201 (333)
..|.+..-+++++|+.|.
T Consensus 2 vlgli~~tl~glf~aayq 19 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAYQ 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHHH
Confidence 357777888888888763
No 2
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=11.64 E-value=1.1e+02 Score=15.84 Aligned_cols=29 Identities=24% Similarity=0.124 Sum_probs=18.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043160 66 PKMTFRIFAKIALLGLFEPVIGQNLYFTG 94 (333)
Q Consensus 66 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~a 94 (333)
|...||+...+++.|.+.......++=|+
T Consensus 5 pDMgrR~~MNLll~G~~~~~~~g~l~py~ 33 (39)
T d1q90r_ 5 PDMNKRNIMNLILAGGAGLPITTLALGYG 33 (39)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHhccchhhhhhcccee
Confidence 55667888888888777645555444443
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=8.51 E-value=4.2e+02 Score=20.39 Aligned_cols=17 Identities=18% Similarity=0.237 Sum_probs=8.3
Q ss_pred hHHHHHHHHHHHHhccc
Q 043160 109 ILPALTFLMAWIFRLEK 125 (333)
Q Consensus 109 ~~pi~~~ll~~~~~~e~ 125 (333)
...+...++.+.+.+|+
T Consensus 191 ~~~~~~~~~~~~~~~~~ 207 (447)
T d1pw4a_ 191 FCAILVALFAFAMMRDT 207 (447)
T ss_dssp HHHHHHHHHHHHHCCCS
T ss_pred hhHHHHHHHHHHhcccc
Confidence 34444455555555443
No 4
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=6.96 E-value=89 Score=17.74 Aligned_cols=26 Identities=15% Similarity=0.078 Sum_probs=15.6
Q ss_pred cccceecccchhhHHHHHHHHHHHHH
Q 043160 124 EKVKIKSMRSQAKILGTIVTAGGAMC 149 (333)
Q Consensus 124 e~~~~~~~~~~~~~~g~~l~~~Gv~l 149 (333)
.++++.+.....+..|+.+.+.|.+-
T Consensus 16 ~KP~~~Ef~~ia~v~~iG~~i~G~IG 41 (56)
T d1rh5b_ 16 KKPTKDEYLAVAKVTALGISLLGIIG 41 (56)
T ss_dssp ECCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666665555566666666665543
No 5
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.53 E-value=1.8e+02 Score=15.37 Aligned_cols=22 Identities=18% Similarity=0.058 Sum_probs=13.1
Q ss_pred ccccceecccchhhHHHHHHHHHHHHH
Q 043160 123 LEKVKIKSMRSQAKILGTIVTAGGAMC 149 (333)
Q Consensus 123 ~e~~~~~~~~~~~~~~g~~l~~~Gv~l 149 (333)
+|+++..+ |.+|+..++.+.+.
T Consensus 7 ~~~ls~~E-----~aigLt~~f~~~L~ 28 (43)
T d1v54m_ 7 KTPTSPKE-----QAIGLSVTFLSFLL 28 (43)
T ss_dssp SSCCCHHH-----HHHHHHHHHHHHHH
T ss_pred CCCCCHHH-----HHHHHHHHHHHHHc
Confidence 34555555 67777777666544
No 6
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.66 E-value=2.1e+02 Score=13.15 Aligned_cols=8 Identities=25% Similarity=0.430 Sum_probs=3.8
Q ss_pred HHHhcccc
Q 043160 297 SFFIAEEL 304 (333)
Q Consensus 297 ~~~~~e~~ 304 (333)
.+++.|.|
T Consensus 20 aiffrepp 27 (30)
T d2axtt1 20 AIFFREPP 27 (30)
T ss_dssp HHHTSCCC
T ss_pred HHHhcCCC
Confidence 34455544
No 7
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=3.24 E-value=9.9e+02 Score=18.68 Aligned_cols=26 Identities=15% Similarity=0.092 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccchh
Q 043160 76 IALLGLFEPVIGQNLYFTGLKCSTAT 101 (333)
Q Consensus 76 ~~~~g~~~~~~~~~~~~~al~~~~~~ 101 (333)
....|.+..-.++..++-+-......
T Consensus 198 ~~~lG~~iLw~gW~gFN~gs~~~~~~ 223 (383)
T d1u7ga_ 198 MVFTGTAILYIGWFGFNAGSAGTANE 223 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGSSSSH
T ss_pred hhhHHHHHHHHHHHHhccccccccch
Confidence 34455555477777777766554333
No 8
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=2.01 E-value=1.4e+03 Score=17.82 Aligned_cols=65 Identities=11% Similarity=0.127 Sum_probs=34.7
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHH------HHhhcCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 043160 34 QGMSQHVLVAYRMVVATSLIAPFAI------VLERKTR----PKMTFRIFAKIALLGLFEPVIGQNLYFTGLKCS 98 (333)
Q Consensus 34 ~~~~~~~~~~~r~~~~~~~l~~~~~------~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~ 98 (333)
..++|.++.+..+..-.+....+.. ..+|+.+ +..+++.+..+...|..........+++...+.
T Consensus 263 ~pl~~~qILwinli~d~lpaiaL~~ep~d~~iM~~~Pr~~~~~li~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~ 337 (472)
T d1wpga4 263 EALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRSPKEPLISGWLFFRYMAIGGYVGAATVGAAAWWFMYA 337 (472)
T ss_dssp CSCCHHHHHHHHHTTTHHHHHHHTTCCCCSGGGGSCCCCTTCCSSCTHHHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred ccccHHHHHHHHHHhHHHHHHHHhcCCCchhhhcCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3578888888877665544443322 1111111 223455566666666655455555666655443
No 9
>d1gl4a1 d.22.1.2 (A:399-631) Domain G2 of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=1.97 E-value=3.1e+02 Score=20.40 Aligned_cols=37 Identities=19% Similarity=0.434 Sum_probs=0.0
Q ss_pred HHHhcccchhhHHHhhchHHHHHHHHHHHHhcccccee
Q 043160 92 FTGLKCSTATFTVAMCNILPALTFLMAWIFRLEKVKIK 129 (333)
Q Consensus 92 ~~al~~~~~~~~~~l~~~~pi~~~ll~~~~~~e~~~~~ 129 (333)
|.+++.+|+..+..+..+.|+...+ +|+|-+|.-+..
T Consensus 42 ytaIs~IP~~~G~~L~~L~~ig~~i-gWlFA~e~~~a~ 78 (233)
T d1gl4a1 42 YTAISTIPETVGYSLLPLAPIGGII-GWMFAVEQDGFK 78 (233)
T ss_dssp EEEEESCCHHHHGGGTTCTHHHHHH-HHHTCEECTTCC
T ss_pred EEEccCCChhHhhhhhhhhhhcCce-eeeEEeecCCcc
No 10
>d3cx5d2 f.23.11.1 (D:261-307) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=1.91 E-value=6.4e+02 Score=13.29 Aligned_cols=29 Identities=10% Similarity=-0.048 Sum_probs=0.0
Q ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHH
Q 043160 2 ILQYHHAKPYLGVIFMQFCSSIMSIITKI 30 (333)
Q Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~k~ 30 (333)
+++.|+..|+=.+++.+++++.....-|.
T Consensus 2 EhDeRK~mg~K~~~i~s~l~~~~~y~KR~ 30 (47)
T d3cx5d2 2 EHDERKRLGLKTVIILSSLYLLSIWVKKF 30 (47)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHh
Done!