Query 043161
Match_columns 444
No_of_seqs 263 out of 1929
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 13:30:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043161.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043161hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 6.1E-54 1.3E-58 414.0 50.2 407 33-443 12-424 (455)
2 PRK00187 multidrug efflux prot 100.0 5.3E-50 1.1E-54 390.4 52.3 409 32-443 4-425 (464)
3 PRK10189 MATE family multidrug 100.0 8.5E-50 1.8E-54 388.9 51.0 407 34-443 25-443 (478)
4 PRK01766 multidrug efflux prot 100.0 9.5E-48 2.1E-52 375.9 51.6 409 32-443 6-423 (456)
5 PRK09575 vmrA multidrug efflux 100.0 1.9E-47 4E-52 372.0 48.5 405 34-443 8-417 (453)
6 PRK10367 DNA-damage-inducible 100.0 4.1E-47 8.9E-52 366.7 49.9 400 34-443 5-412 (441)
7 TIGR00797 matE putative efflux 100.0 2.4E-36 5.2E-41 285.0 42.8 336 46-384 1-341 (342)
8 TIGR01695 mviN integral membra 100.0 7.9E-35 1.7E-39 289.0 46.3 394 40-443 2-409 (502)
9 KOG1347 Uncharacterized membra 100.0 3.9E-36 8.4E-41 287.7 32.5 409 34-443 24-433 (473)
10 TIGR02900 spore_V_B stage V sp 100.0 2.8E-34 6.2E-39 284.1 43.7 394 41-443 2-415 (488)
11 PRK15099 O-antigen translocase 100.0 8.6E-32 1.9E-36 260.2 41.0 382 40-438 3-390 (416)
12 PF03023 MVIN: MviN-like prote 100.0 5.2E-28 1.1E-32 234.1 43.0 364 68-438 5-381 (451)
13 COG0728 MviN Uncharacterized m 100.0 7.6E-27 1.6E-31 221.9 46.4 397 37-437 6-414 (518)
14 PRK10459 colanic acid exporter 100.0 2.9E-25 6.4E-30 219.6 41.6 375 37-436 4-381 (492)
15 COG2244 RfbX Membrane protein 99.9 1.2E-24 2.6E-29 214.8 35.8 389 35-441 3-393 (480)
16 PRK00187 multidrug efflux prot 99.9 5.7E-22 1.2E-26 193.6 27.8 208 30-238 228-442 (464)
17 PRK01766 multidrug efflux prot 99.9 4.8E-21 1.1E-25 187.6 26.4 208 31-239 232-441 (456)
18 COG0534 NorM Na+-driven multid 99.9 1.5E-20 3.2E-25 182.0 27.7 210 28-239 231-442 (455)
19 PRK10189 MATE family multidrug 99.9 4E-20 8.6E-25 180.7 27.5 206 32-238 253-460 (478)
20 PRK09575 vmrA multidrug efflux 99.9 5.4E-20 1.2E-24 179.4 28.1 209 30-241 226-437 (453)
21 TIGR01695 mviN integral membra 99.9 8E-19 1.7E-23 174.4 31.6 231 32-270 217-452 (502)
22 PRK10367 DNA-damage-inducible 99.8 1.3E-18 2.9E-23 168.4 23.2 188 254-443 6-193 (441)
23 PF01943 Polysacc_synt: Polysa 99.8 5E-16 1.1E-20 141.6 33.8 272 40-326 1-273 (273)
24 PF03023 MVIN: MviN-like prote 99.8 1.6E-16 3.4E-21 154.2 30.9 211 30-242 190-405 (451)
25 TIGR02900 spore_V_B stage V sp 99.8 2.6E-16 5.5E-21 156.0 28.6 205 32-241 219-435 (488)
26 PF01554 MatE: MatE; InterPro 99.8 8.9E-19 1.9E-23 146.5 7.8 162 265-428 1-162 (162)
27 PRK10459 colanic acid exporter 99.8 6E-15 1.3E-19 146.1 34.5 202 32-239 201-404 (492)
28 COG0728 MviN Uncharacterized m 99.8 1E-14 2.2E-19 139.5 34.3 214 30-245 224-442 (518)
29 PF01554 MatE: MatE; InterPro 99.7 2E-18 4.3E-23 144.4 5.9 160 46-206 1-162 (162)
30 PRK15099 O-antigen translocase 99.7 3.4E-15 7.4E-20 144.5 27.2 202 30-238 207-410 (416)
31 TIGR00797 matE putative efflux 99.7 4.3E-15 9.3E-20 140.2 20.3 175 265-442 1-177 (342)
32 COG2244 RfbX Membrane protein 99.7 8.7E-14 1.9E-18 137.5 27.2 187 33-225 208-396 (480)
33 PF13440 Polysacc_synt_3: Poly 99.6 1.8E-12 4E-17 116.5 31.2 246 56-324 2-250 (251)
34 KOG1347 Uncharacterized membra 99.1 6E-09 1.3E-13 100.8 17.4 186 253-442 24-210 (473)
35 PF04506 Rft-1: Rft protein; 99.0 3.4E-07 7.5E-12 90.0 27.6 399 41-442 4-450 (549)
36 PF07260 ANKH: Progressive ank 99.0 2.5E-06 5.4E-11 75.4 29.3 269 35-311 8-293 (345)
37 KOG2864 Nuclear division RFT1 98.8 2.9E-05 6.3E-10 71.9 28.6 386 36-435 6-424 (530)
38 PF04506 Rft-1: Rft protein; 98.7 2.1E-06 4.6E-11 84.5 19.8 206 37-243 252-473 (549)
39 PF14667 Polysacc_synt_C: Poly 98.6 7.1E-06 1.5E-10 66.9 17.5 81 160-242 2-82 (146)
40 KOG2864 Nuclear division RFT1 98.3 4.5E-05 9.7E-10 70.7 15.6 202 38-241 239-450 (530)
41 PF01943 Polysacc_synt: Polysa 97.6 0.00052 1.1E-08 62.2 10.0 73 32-105 199-272 (273)
42 PF07260 ANKH: Progressive ank 97.5 0.026 5.6E-07 50.6 18.5 164 254-424 8-174 (345)
43 COG4267 Predicted membrane pro 97.3 0.13 2.8E-06 47.3 32.0 330 85-440 71-422 (467)
44 PF13440 Polysacc_synt_3: Poly 96.7 0.28 6.1E-06 43.6 18.8 123 281-419 9-132 (251)
45 PF14667 Polysacc_synt_C: Poly 96.1 0.0065 1.4E-07 49.2 3.9 59 381-440 2-60 (146)
46 PF04505 Dispanin: Interferon- 71.8 25 0.00055 25.0 6.7 40 311-350 33-72 (82)
47 COG4267 Predicted membrane pro 47.1 2.6E+02 0.0057 26.6 16.4 107 309-429 75-181 (467)
48 PF05313 Pox_P21: Poxvirus P21 41.1 1.2E+02 0.0027 25.1 6.4 26 214-239 135-160 (189)
49 PF03904 DUF334: Domain of unk 24.8 3.6E+02 0.0078 23.5 6.8 39 110-148 142-180 (230)
50 PF01102 Glycophorin_A: Glycop 24.8 1.1E+02 0.0024 23.7 3.5 6 234-239 85-90 (122)
51 PF03609 EII-Sor: PTS system s 22.2 5.5E+02 0.012 22.7 16.4 66 302-367 104-170 (238)
52 PRK10739 putative antibiotic t 20.3 5.5E+02 0.012 21.9 9.4 57 319-379 21-77 (197)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=6.1e-54 Score=414.01 Aligned_cols=407 Identities=24% Similarity=0.371 Sum_probs=383.1
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcc
Q 043161 33 FWTETVKMWKIATPIVFNILCNYGTNSFTNIFVGHIGEIELSSVTISLSVIGTFSFGFMLGMGSALETLCGQAFGAGQVH 112 (444)
Q Consensus 33 ~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~ 112 (444)
+++..|+++++++|.+++++...+++.+|+.++||+|++++++.+++.++...+ ..+..|++.+.++.++|++|+||++
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~-~~~~~gl~~g~~~liaq~~Ga~~~~ 90 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-IAIFIGLGTGTTVLVAQAIGAGDRK 90 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHcCCchH
Confidence 456899999999999999999999999999999999999999999999998755 6799999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCChhHHHH
Q 043161 113 MLGVYMQRSWLILSVTCVCLLPI-YCFASPILKLLGQEEQIADLAGQFTILTIPQLFSLAINFPTQKFLQAQSKVSAFAW 191 (444)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 191 (444)
++++..++++.++++.+++..++ +.+.++++.+++.++|+.+.+.+|+++..++.|+..+..++.+.+|+.||+|.+++
T Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~ 170 (455)
T COG0534 91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY 170 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence 99999999999999999777754 89999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHh-cC-CccchhHHHHHHHHHHHHHHHHHHHHhhh---hhhhccCCHHhHHhHHHHHHHHhHH
Q 043161 192 IGFVALVVHIVMLYVFIYV-FD-WGMTGAAIAYDISSWIIAIGQVIYVIGWC---KETWHGLSRAAFIEIWAFVRLSLAS 266 (444)
Q Consensus 192 ~~~~~~~~~i~l~~~li~~-~~-~g~~g~~~a~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~ 266 (444)
.++++.++|+++|++++++ ++ +|+.|+++||++++.+..++..++++|+. .....+..+.+++.+|++++.|+|.
T Consensus 171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~ 250 (455)
T COG0534 171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPI 250 (455)
T ss_pred HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccH
Confidence 9999999999999999998 57 99999999999999999999999998543 2222333344568899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 043161 267 AVMLCLEIWYMMSIIILTGHLDNAIVAVGSLSVCMNLNGWEAMLFIGINAAISVRVSNELGLGHPRAAKYSVYVTVFQSL 346 (444)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~~~~~~~i~~a~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 346 (444)
.+++..+...+...+.+++++|+ .++|+|+++.++.++.++++.|++++..+.+++++|++|++++++..+.+.+++.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~G~--~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~ 328 (455)
T COG0534 251 FLESLSESLGFLLLTLFVARLGT--VALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSL 328 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999995 4667999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCcchhhHHHHHHHHHHhhHHHH
Q 043161 347 LIGVLFMVIILITKDYFAIIFTSSAELQQAVAKLAFLLGITMVLNSVQPVISGVAIGGGWQAMVAYINIGSYYIFGLPLG 426 (444)
Q Consensus 347 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~ 426 (444)
.++...++++.++++++.++|++|+|+.+.+..++++..+..++++.+....+.+|+.||+|.+++.++.+.|++.+|+.
T Consensus 329 ~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~ 408 (455)
T COG0534 329 LIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLA 408 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCceEEecc
Q 043161 427 YLLGYTANLGVTVYLHT 443 (444)
Q Consensus 427 ~~l~~~~~~~~~g~~~~ 443 (444)
|++.+++ +|..|+|.+
T Consensus 409 ~~l~~~~-~g~~Gvw~~ 424 (455)
T COG0534 409 YLLGFFF-LGLAGVWIG 424 (455)
T ss_pred HHHhhhc-ccchHHHHH
Confidence 9999987 899999875
No 2
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=5.3e-50 Score=390.36 Aligned_cols=409 Identities=19% Similarity=0.240 Sum_probs=372.7
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCc
Q 043161 32 VFWTETVKMWKIATPIVFNILCNYGTNSFTNIFVGHIGEIELSSVTISLSVIGTFSFGFMLGMGSALETLCGQAFGAGQV 111 (444)
Q Consensus 32 ~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~ 111 (444)
++++..|++++.++|.+++++...+.+.+|+.+++|+|++++++++++.++.++. ..+..|++++..+.++|++|++|+
T Consensus 4 ~~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~-~~~~~gl~~~~~~i~aq~~Ga~~~ 82 (464)
T PRK00187 4 PPTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFV-SIFCVGVIAAVGTLVAIRHGAGDI 82 (464)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCh
Confidence 3557899999999999999999999999999999999999999999999998765 567899999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCChhHHHH
Q 043161 112 HMLGVYMQRSWLILSVTCVCLLPIYCFASPILKLLGQEEQIADLAGQFTILTIPQLFSLAINFPTQKFLQAQSKVSAFAW 191 (444)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 191 (444)
|++++..+.++.+..+++++..++..+.++++.+++.|+|+.+.+.+|+++..++.|+..+....++++|+.||++.+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 162 (464)
T PRK00187 83 EGATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMV 162 (464)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 99999999999999998888776655679999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhc----CCccchhHHHHHHHHHHHHHHHHHHHHhhh-h--hhhc-cCCHHhHHhHHHHHHHH
Q 043161 192 IGFVALVVHIVMLYVFIYVF----DWGMTGAAIAYDISSWIIAIGQVIYVIGWC-K--ETWH-GLSRAAFIEIWAFVRLS 263 (444)
Q Consensus 192 ~~~~~~~~~i~l~~~li~~~----~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~-~--~~~~-~~~~~~~~~~~~~~~~~ 263 (444)
.++++.++|++++++++++. ++|+.|+++|+.+++....+...++++++. . .+.+ +..+.+++.+|++++.+
T Consensus 163 ~~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg 242 (464)
T PRK00187 163 ISLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLG 242 (464)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhh
Confidence 99999999999999999753 489999999999999888777666665321 1 1111 12233457799999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 043161 264 LASAVMLCLEIWYMMSIIILTGHLDNAIVAVGSLSVCMNLNGWEAMLFIGINAAISVRVSNELGLGHPRAAKYSVYVTVF 343 (444)
Q Consensus 264 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~~~~~~~i~~a~~~~~s~~~~~~~~~~~~~~~~~~~~ 343 (444)
+|..+++..+.....+++.+++++|+. ++++++++.++..+..++..|++++..+.+++++|++|.+++++..+.+..
T Consensus 243 ~P~~~~~~~~~~~~~i~~~~i~~~G~~--alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~~~~~~~~~l~ 320 (464)
T PRK00187 243 LPIGGTYAVEVGLFTFAALCMGALGST--QLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRLLEARRAGRVGIG 320 (464)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999964 566999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhccCC--cH---HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCcchhhHHHHHHHH
Q 043161 344 QSLLIGVLFMVIILITKDYFAIIFTS--SA---ELQQAVAKLAFLLGITMVLNSVQPVISGVAIGGGWQAMVAYINIGSY 418 (444)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~i~~l~~~--~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 418 (444)
++..++++.++++.++++++.++|++ |+ |+.+.+..++++.+++.++++++....+++++.||+|.++++++.+.
T Consensus 321 ~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~~~~~~~~~~~ 400 (464)
T PRK00187 321 FGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDARTTFLIGLACY 400 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCccHHHHHHHHHHH
Confidence 99999999999999999999999964 43 67888899999999999999999999999999999999999999999
Q ss_pred HHhhHHHHHHHHHhcCCCceEEecc
Q 043161 419 YIFGLPLGYLLGYTANLGVTVYLHT 443 (444)
Q Consensus 419 ~~~~i~l~~~l~~~~~~~~~g~~~~ 443 (444)
|++++|+.|++.+.+|+|+.|+|.+
T Consensus 401 ~~~~ipl~~ll~~~~~~g~~Gvw~~ 425 (464)
T PRK00187 401 WLVGAPLAWLLAFTLGWGAVGVWWG 425 (464)
T ss_pred HHHHHHHHHHHHhccCCCceeeHHH
Confidence 9999999999999999999999975
No 3
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=8.5e-50 Score=388.88 Aligned_cols=407 Identities=15% Similarity=0.189 Sum_probs=372.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCccc
Q 043161 34 WTETVKMWKIATPIVFNILCNYGTNSFTNIFVGHIGEIELSSVTISLSVIGTFSFGFMLGMGSALETLCGQAFGAGQVHM 113 (444)
Q Consensus 34 ~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~ 113 (444)
-+..|++++.++|.+++++...+.+.+|+.+++++|++++++++++.++..+. ..+..|++++..+.++|++|++|+|+
T Consensus 25 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~-~~~~~gl~~g~~~lvsq~~Ga~~~~~ 103 (478)
T PRK10189 25 VLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVI-MAFFAAIDLGTTVVVAFSLGKRDRRR 103 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 45799999999999999999999999999999999999999999999998754 67889999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcC--CCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCChhHHH
Q 043161 114 LGVYMQRSWLILSVTCVCLLPI-YCFASPILKLLG--QEEQIADLAGQFTILTIPQLFSLAINFPTQKFLQAQSKVSAFA 190 (444)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 190 (444)
+++..++++.++.+.+++..++ +.+.++++.++. .|+|+.+.+.+|+++..++.|+..+....++.+|+.||++.++
T Consensus 104 ~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~ 183 (478)
T PRK10189 104 ARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPL 183 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhH
Confidence 9999999999999998888765 778899999984 6899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhc----CCccchhHHHHHHHHHHHHHHHHHHHHhhhh--h--hhcc-CCHHhHHhHHHHHH
Q 043161 191 WIGFVALVVHIVMLYVFIYVF----DWGMTGAAIAYDISSWIIAIGQVIYVIGWCK--E--TWHG-LSRAAFIEIWAFVR 261 (444)
Q Consensus 191 ~~~~~~~~~~i~l~~~li~~~----~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~--~--~~~~-~~~~~~~~~~~~~~ 261 (444)
+.+++..++|+++++++++.+ ++|+.|+++|+.+++.+..++..+++.++.+ . ++++ ..+.+++.+|++++
T Consensus 184 ~i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 263 (478)
T PRK10189 184 LINGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFAIIWEVMG 263 (478)
T ss_pred HHHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCCHHHHHHHHH
Confidence 999999999999999999853 7899999999999999998877666553211 1 1111 11224578999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHH
Q 043161 262 LSLASAVMLCLEIWYMMSIIILTGHLDNAIVAVGSLSVCMNLNGWEAMLFIGINAAISVRVSNELGLGHPRAAKYSVYVT 341 (444)
Q Consensus 262 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~~~~~~~i~~a~~~~~s~~~~~~~~~~~~~~~~~~ 341 (444)
.|+|..++.........+.+.+++.+|+ .++|+|+++.++.++..++..|++++..+.+++++|++|.+++|+..+.+
T Consensus 264 iG~P~~~~~~~~~~~~~~~~~~~~~~G~--~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~~a~~~~~~~ 341 (478)
T PRK10189 264 IGIPASIESVLFNGGKLLTQMFVAGMGT--SVIAGNFIAFSIAALINLPGNALGSASTIITGTRLGKGQIAQAERQLRHV 341 (478)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999999999999988888888899886 46679999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCcchhhHHHHHHHHHHh
Q 043161 342 VFQSLLIGVLFMVIILITKDYFAIIFTSSAELQQAVAKLAFLLGITMVLNSVQPVISGVAIGGGWQAMVAYINIGSYYIF 421 (444)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 421 (444)
.++++.+++..+++++++++++.++|++|+|+.+.+..++++.++..++++++....+.+++.||++.++++++.+.|++
T Consensus 342 ~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~i~~~~~~~v 421 (478)
T PRK10189 342 FWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAMWVSMLGMWGC 421 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCCceEEecc
Q 043161 422 GLPLGYLLGYTANLGVTVYLHT 443 (444)
Q Consensus 422 ~i~l~~~l~~~~~~~~~g~~~~ 443 (444)
.+|+.|++...+++|+.|+|.+
T Consensus 422 ~ip~~~ll~~~~~~g~~Gvw~~ 443 (478)
T PRK10189 422 RVVAGYILGIMLGFGVVGVWMG 443 (478)
T ss_pred HHHHHHHHHHHhCCCHHHHHHH
Confidence 9999999999889999999975
No 4
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=9.5e-48 Score=375.86 Aligned_cols=409 Identities=21% Similarity=0.380 Sum_probs=374.2
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCc
Q 043161 32 VFWTETVKMWKIATPIVFNILCNYGTNSFTNIFVGHIGEIELSSVTISLSVIGTFSFGFMLGMGSALETLCGQAFGAGQV 111 (444)
Q Consensus 32 ~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~ 111 (444)
..++..|++++.++|.+++++...+.+.+|+.+++++|++++++++.+.++.... ..+..|++.+..+.++|++|++|+
T Consensus 6 ~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~-~~~~~g~~~a~~~~vs~~~g~~~~ 84 (456)
T PRK01766 6 KYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPV-ILFGHGLLLALTPIVAQLNGAGRR 84 (456)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCh
Confidence 3457899999999999999999999999999999999999999999999886644 567889999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCChhHHH
Q 043161 112 HMLGVYMQRSWLILSVTCVCLLPI-YCFASPILKLLGQEEQIADLAGQFTILTIPQLFSLAINFPTQKFLQAQSKVSAFA 190 (444)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 190 (444)
|++++..+.+..+.++.+++..++ +.+.+++..+++.|+|..+.+.+|+++.+++.++..+..+.++++|+.|+++.++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 164 (456)
T PRK01766 85 ERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTM 164 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHH
Confidence 999999999999999999887765 7778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh----cCCccchhHHHHHHHHHHHHHHHHHHHHhhhhh----hhccCCHHhHHhHHHHHHH
Q 043161 191 WIGFVALVVHIVMLYVFIYV----FDWGMTGAAIAYDISSWIIAIGQVIYVIGWCKE----TWHGLSRAAFIEIWAFVRL 262 (444)
Q Consensus 191 ~~~~~~~~~~i~l~~~li~~----~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 262 (444)
+.+.++.++|+++++++++. .++|+.|+++++.+++.+..++..++++|+.+. .+.+..+.+++..|++++.
T Consensus 165 ~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~l 244 (456)
T PRK01766 165 VIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLKL 244 (456)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHHHc
Confidence 99999999999999999864 257999999999999999999888877643221 1122222345779999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 043161 263 SLASAVMLCLEIWYMMSIIILTGHLDNAIVAVGSLSVCMNLNGWEAMLFIGINAAISVRVSNELGLGHPRAAKYSVYVTV 342 (444)
Q Consensus 263 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~~~~~~~i~~a~~~~~s~~~~~~~~~~~~~~~~~~~ 342 (444)
++|..++...+...+.++..+++++|+. ++++++++.++.++..+++.|++++..+.+++++|++|++++++..+.++
T Consensus 245 ~~P~~~~~~~~~~~~~~~~~~~~~~G~~--~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~~~~~~~~~~ 322 (456)
T PRK01766 245 GLPIGLAIFFEVSLFAVVTLLVSPLGTV--TVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRTLDARQYAYIGL 322 (456)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHcChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999864 56699999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCcchhhHHHHHHHHHHhh
Q 043161 343 FQSLLIGVLFMVIILITKDYFAIIFTSSAELQQAVAKLAFLLGITMVLNSVQPVISGVAIGGGWQAMVAYINIGSYYIFG 422 (444)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 422 (444)
+++..++++.++++..+++++.++|++|+++.+.+..++++..+..++++++....+++++.||+|.++.+++.+.|++.
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~ 402 (456)
T PRK01766 323 AVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFITFIAYWVLG 402 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCceEEecc
Q 043161 423 LPLGYLLGYTANLGVTVYLHT 443 (444)
Q Consensus 423 i~l~~~l~~~~~~~~~g~~~~ 443 (444)
+|+.+++.+..++|..|+|++
T Consensus 403 i~~~~~l~~~~~~G~~G~~~~ 423 (456)
T PRK01766 403 LPLGYILALTDPMGPFGFWIG 423 (456)
T ss_pred HHHHHHHHhccCCCceehHHH
Confidence 999999999999999999975
No 5
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=1.9e-47 Score=371.97 Aligned_cols=405 Identities=20% Similarity=0.244 Sum_probs=368.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhc-ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcc
Q 043161 34 WTETVKMWKIATPIVFNILCNYGTNSFTNIFVGHI-GEIELSSVTISLSVIGTFSFGFMLGMGSALETLCGQAFGAGQVH 112 (444)
Q Consensus 34 ~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~~-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~ 112 (444)
++..|++++.++|.+++++...+++.+|+.+++|+ |++++++++.+.++.++. ..+..+++.+..+.++|++|+||+|
T Consensus 8 ~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~ 86 (453)
T PRK09575 8 QSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGII-LGIGLMVGMGTGSLLSIKRGEGDLE 86 (453)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH-HHHHHHHhccHHHHHHHHhcCCCHH
Confidence 35779999999999999999999999999999997 999999999999998754 5678899999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCChhHHHH
Q 043161 113 MLGVYMQRSWLILSVTCVCLLPI-YCFASPILKLLGQEEQIADLAGQFTILTIPQLFSLAINFPTQKFLQAQSKVSAFAW 191 (444)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 191 (444)
++++..+.++.++.+.+++..++ ..+.++++.+++.|++..+.+.+|+++..++.++..+.....+.+|+.|+++.+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 166 (453)
T PRK09575 87 KAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATG 166 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 99999999999999999888765 78899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHh-hhhhhhcc-CCHHhHHhHHHHHHHHhHHHHH
Q 043161 192 IGFVALVVHIVMLYVFIYVFDWGMTGAAIAYDISSWIIAIGQVIYVIG-WCKETWHG-LSRAAFIEIWAFVRLSLASAVM 269 (444)
Q Consensus 192 ~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~ 269 (444)
.++.+.++|+++++++++.+++|+.|+++|+.+++.+..++..++++| +.+.++.. ..+.+++.+|++++.|.|..++
T Consensus 167 ~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~~ 246 (453)
T PRK09575 167 LMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKELRFNWSLAPKIVLLGSSSFFM 246 (453)
T ss_pred HHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccCCcCHHHHHHHHHhChhHHHH
Confidence 999999999999999999888999999999999999999988777763 22222211 1122456789999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHH
Q 043161 270 LCLEIWYMMSIIILTGHLDNAIVAVGSLSVCMNLNGWEAMLFIGINAAISVRVSNELGLGHPRAAKYSVYVTVFQSLLIG 349 (444)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~~~~~~~i~~a~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (444)
.........+.+.+.+++|+ +.++|+|+++.++.++..++..|++++..|.+|+++|+||++++++..+.+.++++..+
T Consensus 247 ~~~~~~~~~~~~~~~~~~g~-~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~~~~~~~~~~~l~l~~~~~ 325 (453)
T PRK09575 247 YLYGSFVVALHNRLFMEYGS-ALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQYDNIKKLLKLAMKVTVLAG 325 (453)
T ss_pred HHHHHHHHHHHHHHHHHhCc-hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence 99999999998888888886 33577999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhccCC-cHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCcchhhHHHHHHHHHHhhHHHHHH
Q 043161 350 VLFMVIILITKDYFAIIFTS-SAELQQAVAKLAFLLGITMVLNSVQPVISGVAIGGGWQAMVAYINIGSYYIFGLPLGYL 428 (444)
Q Consensus 350 ~~~~~~~~~~~~~i~~l~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~ 428 (444)
++.++++..+++++.++|++ |+|+.+.+..++++..++.++++++....+.+++.||++.++..++.+ +++++|+.++
T Consensus 326 ~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~v~ip~~~l 404 (453)
T PRK09575 326 IAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKALFISIGN-MLIQLPFLFI 404 (453)
T ss_pred HHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHh-HHHHHHHHHH
Confidence 99999999999999999995 788999999999999999999999999999999999999999999877 6789999999
Q ss_pred HHHhcCCCceEEecc
Q 043161 429 LGYTANLGVTVYLHT 443 (444)
Q Consensus 429 l~~~~~~~~~g~~~~ 443 (444)
+... +|+.|+|.+
T Consensus 405 l~~~--~G~~Gvw~a 417 (453)
T PRK09575 405 LPKW--LGVDGVWLA 417 (453)
T ss_pred HHHH--HCcchHhhH
Confidence 9765 478888874
No 6
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=4.1e-47 Score=366.68 Aligned_cols=400 Identities=17% Similarity=0.162 Sum_probs=351.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhc-ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcc
Q 043161 34 WTETVKMWKIATPIVFNILCNYGTNSFTNIFVGHI-GEIELSSVTISLSVIGTFSFGFMLGMGSALETLCGQAFGAGQVH 112 (444)
Q Consensus 34 ~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~~-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~ 112 (444)
.+..|+++|.++|.+++++...+++.+|+.++||+ |++++++++++.++.++. ..+..+++.+..+.++|++|+||+|
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~ 83 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFL-FMLLLFLRMSTTGLTAQAFGAKNPQ 83 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 35688999999999999999999999999999999 788999999999998755 6688899999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCChhHHHH
Q 043161 113 MLGVYMQRSWLILSVTCVCLLPI-YCFASPILKLLGQEEQIADLAGQFTILTIPQLFSLAINFPTQKFLQAQSKVSAFAW 191 (444)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 191 (444)
++++..++++.++.+.+++..++ ..+.++++.+++.|+|+.+.+.+|+++..++.|+..+..+..+.+|+.||++.+++
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 163 (441)
T PRK10367 84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI 163 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence 99999999999999988887755 77888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHhhhhhh---hccCCHHhHHhHHHHHHHHhHHHH
Q 043161 192 IGFVALVVHIVMLYVFIYVFDWGMTGAAIAYDISSWIIAIGQVIYVIGWCKET---WHGLSRAAFIEIWAFVRLSLASAV 268 (444)
Q Consensus 192 ~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~p~~~ 268 (444)
.++++.++|+++++++++.+++|+.|+++||.+++.+..++..++++|+.+.+ .+..+.+.++..|++++.+.|..+
T Consensus 164 ~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~ 243 (441)
T PRK10367 164 LLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKTAWRGNFRRLLALNRDIML 243 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhhhhHHHHHHHHHhCchHHH
Confidence 99999999999999999988999999999999999999888777776432211 111111112468999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 043161 269 MLCLEIWYMMSIIILTGHLDNAIVAVGSLSVCMNLNGWEAMLFIGINAAISVRVSNELGLGHPRAAKYSVYVTVFQSLLI 348 (444)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~~~~~~~i~~a~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (444)
+...+...+.+.+.+++++|+ .++++|+++.++.++.+++..|++++..|.+++++|++|.+++|+..+++.+++..+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~G~--~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~ 321 (441)
T PRK10367 244 RSLLLQLCFGAITVLGARLGS--DIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACRQSGIV 321 (441)
T ss_pred HHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999996 467799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCc---chhhHHHHHHHHHHhhHHH
Q 043161 349 GVLFMVIILITKDYFAIIFTSSAELQQAVAKLAFLLGITMVLNSVQPVISGVAIGGGW---QAMVAYINIGSYYIFGLPL 425 (444)
Q Consensus 349 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~---~~~~~~~~~~~~~~~~i~l 425 (444)
+.+.+++++.+++++..+|++|+|+.+.+..++++..+..+..+......+++++.+| +|.++.++..+.|+..+++
T Consensus 322 ~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~~~~~~~~~~~~~~~~ 401 (441)
T PRK10367 322 ALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNSMAVAAAGFALTLLTL 401 (441)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988764433345455555666555 9999999999977533322
Q ss_pred HHHHHHhcCCCceEEecc
Q 043161 426 GYLLGYTANLGVTVYLHT 443 (444)
Q Consensus 426 ~~~l~~~~~~~~~g~~~~ 443 (444)
+ ++|+.|+|.+
T Consensus 402 -----~--~~g~~Gvw~a 412 (441)
T PRK10367 402 -----P--WLGNHGLWLA 412 (441)
T ss_pred -----H--HcCchHHHHH
Confidence 2 3578888875
No 7
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=100.00 E-value=2.4e-36 Score=285.04 Aligned_cols=336 Identities=27% Similarity=0.495 Sum_probs=303.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCccchHHHHHHHHHHH
Q 043161 46 PIVFNILCNYGTNSFTNIFVGHIGEIELSSVTISLSVIGTFSFGFMLGMGSALETLCGQAFGAGQVHMLGVYMQRSWLIL 125 (444)
Q Consensus 46 p~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~ 125 (444)
|.+++++...+...+|+.+++++|++++++++.+.++.... ..+..|++++..+.++++.|++|+|+.++..+....+.
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~-~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 79 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFL-FSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLA 79 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHH-HHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999887754 56888999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHH
Q 043161 126 SVTCVCLLPI-YCFASPILKLLGQEEQIADLAGQFTILTIPQLFSLAINFPTQKFLQAQSKVSAFAWIGFVALVVHIVML 204 (444)
Q Consensus 126 ~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~ 204 (444)
.+.+++..++ +.+.+++..+++.|++..+++.++++++++..++.++..+..+.+|+.||++.+.+.++++.+++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~ 159 (342)
T TIGR00797 80 LLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILN 159 (342)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh
Confidence 9999888865 788899999888788888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-hcC-CccchhHHHHHHHHHHHHHHHHHHHHhhhhh--hhccCCHHhHHhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 043161 205 YVFIY-VFD-WGMTGAAIAYDISSWIIAIGQVIYVIGWCKE--TWHGLSRAAFIEIWAFVRLSLASAVMLCLEIWYMMSI 280 (444)
Q Consensus 205 ~~li~-~~~-~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 280 (444)
+++++ .++ +|+.|+++++.+++++..++..++.+|+.+. ++++..+.+++..|++++++.|..++++..++...++
T Consensus 160 ~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~ 239 (342)
T TIGR00797 160 YILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFALL 239 (342)
T ss_pred HHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 99887 567 8899999999999999998887777642222 2222222345779999999999999999999999999
Q ss_pred HHHHhcCCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043161 281 IILTGHLDNAIVAVGSLSVCMNLNGWEAMLFIGINAAISVRVSNELGLGHPRAAKYSVYVTVFQSLLIGVLFMVIILITK 360 (444)
Q Consensus 281 ~~~~~~~~~~~~~v~~~~~~~~i~~~~~~~~~~i~~a~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (444)
+.+++.+|. .++++|+++.++.++...++.+++++..|.++++++++|.++.++..++++++.+.++++.++++.+++
T Consensus 240 ~~i~~~~g~--~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 317 (342)
T TIGR00797 240 ALLVARLGS--IALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAIILILFR 317 (342)
T ss_pred HHHHHHcCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988885 456799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCcHHHHHHHHHHHHHH
Q 043161 361 DYFAIIFTSSAELQQAVAKLAFLL 384 (444)
Q Consensus 361 ~~i~~l~~~~~~~~~~~~~~l~~~ 384 (444)
+++.++|++|+++.+.+..++++.
T Consensus 318 ~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 318 EFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHh
Confidence 999999999999888888877764
No 8
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=100.00 E-value=7.9e-35 Score=289.01 Aligned_cols=394 Identities=14% Similarity=0.087 Sum_probs=325.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhhc-ChhHH-HHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHhhhcCCCccchHH
Q 043161 40 MWKIATPIVFNILCNYGTNSFTNIFVGHI-GEIEL-SSVTISLSVIGTFSFGFM-LGMGSALETLCGQAFGAGQVHMLGV 116 (444)
Q Consensus 40 i~~~~~p~~~~~~~~~~~~~~~~~~i~~~-g~~~~-~~~~~~~~~~~~~~~~~~-~gl~~~~~~~is~~~g~~~~~~~~~ 116 (444)
+.|.+.-..++++...+.+++|..+++|+ |++++ ++++.+.++.+.+..... .|++++..+...++.+++ |++++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~~~ 79 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEARR 79 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHHHH
Confidence 56888899999999999999999999995 99999 899999999865433333 468888777776654322 56676
Q ss_pred HHHHHHHHHHHHHH-HHHH-HHHhHHHHHHHc--CCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCChhHHHHH
Q 043161 117 YMQRSWLILSVTCV-CLLP-IYCFASPILKLL--GQEEQIADLAGQFTILTIPQLFSLAINFPTQKFLQAQSKVSAFAWI 192 (444)
Q Consensus 117 ~~~~~~~~~~~~~~-~~~~-~~~~~~~i~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 192 (444)
.+..+.....+.+. +..+ .+.+++++..++ +.++|..+.+.+|+++..++.++..+..+.++++|+.+|++.+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (502)
T TIGR01695 80 AFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFS 159 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHH
Confidence 67666655554443 3344 467788888877 4466777889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccchhH--HHHHHHHHHHHHHHHHHHHhhhhhhhccCCHHhHHhHHHHHHHHhHHHHHH
Q 043161 193 GFVALVVHIVMLYVFIYVFDWGMTGAA--IAYDISSWIIAIGQVIYVIGWCKETWHGLSRAAFIEIWAFVRLSLASAVML 270 (444)
Q Consensus 193 ~~~~~~~~i~l~~~li~~~~~g~~g~~--~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 270 (444)
+++..+++++...++. .++|..|++ +++.+++.+..++..++.+|+.. +++.....+++..|++++.+.|..+++
T Consensus 160 ~i~~~i~~i~~~~~~~--~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~k~~l~~~~p~~~~~ 236 (502)
T TIGR01695 160 PILFNIGVILSLLFFD--WNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGF-LLKPRFNFRDPGLKRFLKLFLPTTLGS 236 (502)
T ss_pred HHHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-cccCcCCCCChhHHHHHHHHHHHHHHH
Confidence 9998887766543333 468999988 99999999998887776654321 111111123467899999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCchHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHH
Q 043161 271 CLEIWYMMSIIILTGHLDNAIVAVGSLSVCMNLNGWEAM-LFIGINAAISVRVSNELGLGHPRAAKYSVYVTVFQSLLIG 349 (444)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~~~-~~~~i~~a~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (444)
....+...++..+.+.++.+ ++++|+.+.++.+++.. +..+++++..|.++++++++|.+++++..+++.++...++
T Consensus 237 ~~~~~~~~id~~~~~~~~~~--~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (502)
T TIGR01695 237 SASQITLLINTALASFLEIG--SVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNELRDLLNQGIRLSLLLT 314 (502)
T ss_pred HHHHHHHHHHHHHHhcCCcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999887777753 46699999999988875 5789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhccCC----cHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCcchhhHHHHHHHHHHhhHHH
Q 043161 350 VLFMVIILITKDYFAIIFTS----SAELQQAVAKLAFLLGITMVLNSVQPVISGVAIGGGWQAMVAYINIGSYYIFGLPL 425 (444)
Q Consensus 350 ~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l 425 (444)
+|.++++.++++++.++|.+ |+|..+....++++++++.++.+++....+.+++.||+|.+++.++.+ .++++|+
T Consensus 315 ~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~-~~i~i~l 393 (502)
T TIGR01695 315 IPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTPFINSVIS-VVLNALL 393 (502)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccCHHHHHHH-HHHHHHH
Confidence 99999999999999999976 556788899999999999999999999999999999999999999998 5789999
Q ss_pred HHHHHHhcCCCceEEecc
Q 043161 426 GYLLGYTANLGVTVYLHT 443 (444)
Q Consensus 426 ~~~l~~~~~~~~~g~~~~ 443 (444)
.+++.+.+| ..|+|.+
T Consensus 394 ~~~l~~~~G--~~G~~~a 409 (502)
T TIGR01695 394 SLLLIFPLG--LVGIALA 409 (502)
T ss_pred HHHHHHHHh--hhHHHHH
Confidence 999988765 5565543
No 9
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=100.00 E-value=3.9e-36 Score=287.67 Aligned_cols=409 Identities=38% Similarity=0.651 Sum_probs=392.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCccc
Q 043161 34 WTETVKMWKIATPIVFNILCNYGTNSFTNIFVGHIGEIELSSVTISLSVIGTFSFGFMLGMGSALETLCGQAFGAGQVHM 113 (444)
Q Consensus 34 ~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~ 113 (444)
..+.|++++++.|..+..+.....+.++..++||+|+.++++.+++.+..+.....+..|+..+..+.++|++|.++++.
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~~ 103 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFTA 103 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccch
Confidence 67889999999999999999999999999999999999999999999999877788999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCChhHHHHHH
Q 043161 114 LGVYMQRSWLILSVTCVCLLPIYCFASPILKLLGQEEQIADLAGQFTILTIPQLFSLAINFPTQKFLQAQSKVSAFAWIG 193 (444)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 193 (444)
.....+++........++...++.+.+++...+++|+++...+..|.++..+..+..........++|++++.....+..
T Consensus 104 lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~~ 183 (473)
T KOG1347|consen 104 LGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLVIG 183 (473)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHH-hhhhhhhccCCHHhHHhHHHHHHHHhHHHHHHHH
Q 043161 194 FVALVVHIVMLYVFIYVFDWGMTGAAIAYDISSWIIAIGQVIYVI-GWCKETWHGLSRAAFIEIWAFVRLSLASAVMLCL 272 (444)
Q Consensus 194 ~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 272 (444)
....++++++++++++..++|..|++++..+++.........|.. ......|..+..+ +++++++++.++|..++..+
T Consensus 184 ~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~~~~~w~~~s~~-~~~~~~~~~lai~s~~micl 262 (473)
T KOG1347|consen 184 LVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSGCLAAWSGFSGE-FDSWGPFFALAIPSAVMICL 262 (473)
T ss_pred HHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecCchhhhhhhhHh-hhhHHHHHHHhhcchheeHH
Confidence 999999999999999999999999999999999999999988887 3456666666666 79999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHH
Q 043161 273 EIWYMMSIIILTGHLDNAIVAVGSLSVCMNLNGWEAMLFIGINAAISVRVSNELGLGHPRAAKYSVYVTVFQSLLIGVLF 352 (444)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~~~~~~~i~~a~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (444)
+++.+.+.....+.++++...+++.++..++....++++.+++.+...++++.+|+++.+++|...+.+...++..+...
T Consensus 263 E~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~~ar~~~~v~~~~~~~~g~~~ 342 (473)
T KOG1347|consen 263 EWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPKRARVSAKVALQTSVAIGASL 342 (473)
T ss_pred HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999998888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCcchhhHHHHHHHHHHhhHHHHHHHHHh
Q 043161 353 MVIILITKDYFAIIFTSSAELQQAVAKLAFLLGITMVLNSVQPVISGVAIGGGWQAMVAYINIGSYYIFGLPLGYLLGYT 432 (444)
Q Consensus 353 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~ 432 (444)
+..+....+.+..+|++|+++.+...+..+++++..++++.+....+..++.|+++...++++.+.+++++|...++.+.
T Consensus 343 ~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~vnl~~yyl~G~p~g~~l~~~ 422 (473)
T KOG1347|consen 343 GTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGAVINLVAYYLVGAPVGLYLGFF 422 (473)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceEEEeeeeeeEecCcceeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceEEecc
Q 043161 433 ANLGVTVYLHT 443 (444)
Q Consensus 433 ~~~~~~g~~~~ 443 (444)
+++++.|+|..
T Consensus 423 ~~~g~~glw~G 433 (473)
T KOG1347|consen 423 TKFGVKGLWIG 433 (473)
T ss_pred EecCceEEEee
Confidence 99999999985
No 10
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=100.00 E-value=2.8e-34 Score=284.09 Aligned_cols=394 Identities=13% Similarity=0.156 Sum_probs=325.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhhc-ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCccchHHHHH
Q 043161 41 WKIATPIVFNILCNYGTNSFTNIFVGHI-GEIELSSVTISLSVIGTFSFGFMLGMGSALETLCGQAFGAGQVHMLGVYMQ 119 (444)
Q Consensus 41 ~~~~~p~~~~~~~~~~~~~~~~~~i~~~-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~ 119 (444)
.|.+.|..++++...+.+++|+.+++|+ |++++|+++.+.++.++.......|++++..+.++|+.|++|+++.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~ 81 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK 81 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence 4778999999999999999999999997 999999999999988765444556999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 043161 120 RSWLILSVTCVCLLPI-YCFASPILKLLGQEEQIADLAGQFTILTIPQLFSLAINFPTQKFLQAQSKVSAFAWIGFVALV 198 (444)
Q Consensus 120 ~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 198 (444)
.+..+..+.+++..++ ..+.+++...+.++++. ..++++..+..++..+....++.+|+.+|++..+..+.++.+
T Consensus 82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i 157 (488)
T TIGR02900 82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQI 157 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHH
Confidence 9999999988887765 66777777766666543 346788889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh-----cCCccchhHHHHHHHHHHHHHHHHHHHHhhhhh--hhc--cCCHHhHHhHHHHHHHHhHHHHH
Q 043161 199 VHIVMLYVFIYV-----FDWGMTGAAIAYDISSWIIAIGQVIYVIGWCKE--TWH--GLSRAAFIEIWAFVRLSLASAVM 269 (444)
Q Consensus 199 ~~i~l~~~li~~-----~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~p~~~~ 269 (444)
+++.++..++.. .++|+.|+++++.+++.+..++..++.+|+.+. +.. +..+.+++.+|++++++.|..++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~l~ 237 (488)
T TIGR02900 158 VRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLS 237 (488)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHHHH
Confidence 998776665542 235688888999999999988877666543221 111 11223356799999999999999
Q ss_pred HHHHHHHHHHHHHHHhcC----Cc-hH---HHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHH
Q 043161 270 LCLEIWYMMSIIILTGHL----DN-AI---VAVGSL-SVCMNLNGWEAMLFIGINAAISVRVSNELGLGHPRAAKYSVYV 340 (444)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~----~~-~~---~~v~~~-~~~~~i~~~~~~~~~~i~~a~~~~~s~~~~~~~~~~~~~~~~~ 340 (444)
++.......+|+.++++. +. .. ..++.| +++.++.+++..+..+++++..|.++++.|++|.++.++..++
T Consensus 238 ~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~s~~~~~~~~~~~~~~~~~ 317 (488)
T TIGR02900 238 RFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPDISEAMAKKNYSSIEKRINQ 317 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999998777643 11 01 123333 4567788888888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCcchhhHHHHHHHHHH
Q 043161 341 TVFQSLLIGVLFMVIILITKDYFAIIFTSSAELQQAVAKLAFLLGITMVLNSVQPVISGVAIGGGWQAMVAYINIGSYYI 420 (444)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 420 (444)
..++...++.|.++++..+++++..++.++++ +..+++++++..++.+++....+.+++.||+|.+++.++.+ .+
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~i 392 (488)
T TIGR02900 318 AIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSAPLQSILQGLGKQKVALRNSLIG-AI 392 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHH-HH
Confidence 99999999999999999999999999986543 56788999999999999999999999999999999999998 57
Q ss_pred hhHHHHHHHHHhcCCCceEEecc
Q 043161 421 FGLPLGYLLGYTANLGVTVYLHT 443 (444)
Q Consensus 421 ~~i~l~~~l~~~~~~~~~g~~~~ 443 (444)
+++++.+++.....+|..|.|.+
T Consensus 393 ~~i~l~~~l~~~~~~G~~Gaaia 415 (488)
T TIGR02900 393 VKIILLFVLTSIPSINIYGYAIT 415 (488)
T ss_pred HHHHHHHHHHhccccccHHHHHH
Confidence 89999999872233456665543
No 11
>PRK15099 O-antigen translocase; Provisional
Probab=100.00 E-value=8.6e-32 Score=260.21 Aligned_cols=382 Identities=12% Similarity=-0.003 Sum_probs=317.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhhc-ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCccchHHHH
Q 043161 40 MWKIATPIVFNILCNYGTNSFTNIFVGHI-GEIELSSVTISLSVIGTFSFGFMLGMGSALETLCGQAFGAGQVHMLGVYM 118 (444)
Q Consensus 40 i~~~~~p~~~~~~~~~~~~~~~~~~i~~~-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~ 118 (444)
+.|.+.....+++...+.+++...+++|+ |++++|.++..+++...+......|++++..+.++|+ ++|+|+.++.+
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~ 80 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVV 80 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHH
Confidence 67888889999999999999999999998 9999999999999888665555788888888899987 67888899999
Q ss_pred HHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 043161 119 QRSWLILSVTCVCLLPI-YCFASPILKLLGQEEQIADLAGQFTILTIPQLFSLAINFPTQKFLQAQSKVSAFAWIGFVAL 197 (444)
Q Consensus 119 ~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 197 (444)
+.++...++.+++.+++ +.+.+++...+..+++. ..+..+..+..+...+.....+.+|+.+|++.++..++++.
T Consensus 81 ~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~ 156 (416)
T PRK15099 81 GTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDY----QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGS 156 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988887765 78888888877776652 24566666666677788899999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHhhhhhhh--ccCCHHhHHhHHHHHHHHhHHHHHHHHHHH
Q 043161 198 VVHIVMLYVFIYVFDWGMTGAAIAYDISSWIIAIGQVIYVIGWCKETW--HGLSRAAFIEIWAFVRLSLASAVMLCLEIW 275 (444)
Q Consensus 198 ~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 275 (444)
++|+.+ .++... ..|+.|+++|+.+++.+..+...++++|+.+.+. .+.+ .+++..|+++++|.|..+++....+
T Consensus 157 ~~~i~l-~i~~~~-~~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~k~ll~~g~p~~~~~~~~~i 233 (416)
T PRK15099 157 LIGVAA-YYLCYR-LGGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKPS-WDNGLAGQLGKFTLMALITSVTLPV 233 (416)
T ss_pred HHHHHH-HHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhcc-CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999877 444332 2399999999999999988877776664322111 1222 2346789999999999999999999
Q ss_pred HHHHHHHHHh-cCCchHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHH
Q 043161 276 YMMSIIILTG-HLDNAIVAVGSLSVCMNLNGW-EAMLFIGINAAISVRVSNELGLGHPRAAKYSVYVTVFQSLLIGVLFM 353 (444)
Q Consensus 276 ~~~~~~~~~~-~~~~~~~~v~~~~~~~~i~~~-~~~~~~~i~~a~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (444)
....++.+++ .+|+ .++|.|+.+.|+.+. ...+..+++++..|.+++. +|.+|.++..++..+....+..+.+
T Consensus 234 ~~~~~~~~l~~~~g~--~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (416)
T PRK15099 234 AYVMMRNLLAAHYSW--DEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKRDITREIVKALKFVLPAVAAAS 308 (416)
T ss_pred HHHHHHHHHHhcCCH--HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988885 7774 477899999999874 5789999999999999995 6788899999999999999999999
Q ss_pred HHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCcchhhHHHHHHHHHHhhHHHHHHHHHhc
Q 043161 354 VIILITKDYFAIIFTSSAELQQAVAKLAFLLGITMVLNSVQPVISGVAIGGGWQAMVAYINIGSYYIFGLPLGYLLGYTA 433 (444)
Q Consensus 354 ~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~ 433 (444)
+++.++++++.+++.+|+ ++.+.+++++++++.++...+........+.++++.....++.. .++.+|+.+++.+.+
T Consensus 309 ~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~l~i~l~~~li~~~ 385 (416)
T PRK15099 309 FTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEVSQ-FTLLTGFAHWLIPLH 385 (416)
T ss_pred HHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 999999999999999876 56678899999999999888888877777888888776666665 788999999999998
Q ss_pred CCCce
Q 043161 434 NLGVT 438 (444)
Q Consensus 434 ~~~~~ 438 (444)
|..+.
T Consensus 386 G~~G~ 390 (416)
T PRK15099 386 GALGA 390 (416)
T ss_pred hhHHH
Confidence 65443
No 12
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.98 E-value=5.2e-28 Score=234.08 Aligned_cols=364 Identities=15% Similarity=0.148 Sum_probs=310.3
Q ss_pred cCh-hHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHhhhcCCCccchHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHH
Q 043161 68 IGE-IELSSVTISLSVIGTFSFGFM-LGMGSALETLCGQAFGAGQVHMLGVYMQRSWLILSVTCVCLLPI-YCFASPILK 144 (444)
Q Consensus 68 ~g~-~~~~~~~~~~~~~~~~~~~~~-~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~ 144 (444)
+|. ++..+|..+.++.+++...+. .+++++..|...+.. ++++|+.++..+.......+..+.++++ +++++++.+
T Consensus 5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~ 83 (451)
T PF03023_consen 5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVR 83 (451)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 464 456799999999987644443 568999999999998 7888888998888887777777777655 888899998
Q ss_pred Hc--CCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHhcCCc---cchhH
Q 043161 145 LL--GQEEQIADLAGQFTILTIPQLFSLAINFPTQKFLQAQSKVSAFAWIGFVALVVHIVMLYVFIYVFDWG---MTGAA 219 (444)
Q Consensus 145 ~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g---~~g~~ 219 (444)
.+ +.+++..+.+.+++++.++..++.++..++.+++|+++|...+....+..++..++...++.. ..| +.+.+
T Consensus 84 ~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~~--~~~~~~i~~la 161 (451)
T PF03023_consen 84 LLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLSN--SWGQENIYALA 161 (451)
T ss_pred HHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHH--hcCchHHHHHH
Confidence 87 557788899999999999999999999999999999999999999999888776554444433 346 88999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccCCHHhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhHHHH
Q 043161 220 IAYDISSWIIAIGQVIYVIGWCKETWHGLSRAAFIEIWAFVRLSLASAVMLCLEIWYMMSIIILTGHLDNAIVAVGSLSV 299 (444)
Q Consensus 220 ~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 299 (444)
++..++.++..++.+...+|...+...+++. +.++.|++++...|..+.....++...+++.+.+.++++. +++++.
T Consensus 162 ~g~~~g~~~~~l~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~--vs~l~Y 238 (451)
T PF03023_consen 162 WGVLIGAIIQFLIQLPYLRRFGFRFRPKFDW-RDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGS--VSALNY 238 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcccccCCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccH--HHHHHH
Confidence 9999999999988888777432211111111 2356899999999999999999999999999999998765 459999
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCC----cHHHH
Q 043161 300 CMNLNGWEA-MLFIGINAAISVRVSNELGLGHPRAAKYSVYVTVFQSLLIGVLFMVIILITKDYFAIIFTS----SAELQ 374 (444)
Q Consensus 300 ~~~i~~~~~-~~~~~i~~a~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~----~~~~~ 374 (444)
+.++.+++. .+..+++++..|.+|+...++|.++.++..++.++....+.+|.++++..+++++.+++.. |+|..
T Consensus 239 A~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~ 318 (451)
T PF03023_consen 239 AQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDT 318 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHH
Confidence 999999988 5568999999999999999999999999999999999999999999999999999999862 56678
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCcchhhHHHHHHHHHHhhHHHHHHHHHhcCCCce
Q 043161 375 QAVAKLAFLLGITMVLNSVQPVISGVAIGGGWQAMVAYINIGSYYIFGLPLGYLLGYTANLGVT 438 (444)
Q Consensus 375 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~~~~ 438 (444)
+..+..+.+++++.++.+++..+...+++.||+|.++..++.+ .++++.+.+++.+.+|..+.
T Consensus 319 ~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~-~~lni~l~~~l~~~~g~~Gl 381 (451)
T PF03023_consen 319 QLTASALRIYALGLPFYALNDLLSRVFYALGDTKTPVRISVIS-VVLNIILSILLVPFFGVAGL 381 (451)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999998 68899999999998865443
No 13
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.97 E-value=7.6e-27 Score=221.87 Aligned_cols=397 Identities=12% Similarity=0.033 Sum_probs=329.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhc-Chh-HHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHhhhcCCCccc
Q 043161 37 TVKMWKIATPIVFNILCNYGTNSFTNIFVGHI-GEI-ELSSVTISLSVIGTFSFG-FMLGMGSALETLCGQAFGAGQVHM 113 (444)
Q Consensus 37 ~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~~-g~~-~~~~~~~~~~~~~~~~~~-~~~gl~~~~~~~is~~~g~~~~~~ 113 (444)
.++++|.++-....++++.+.+++...+++++ |++ ...++.++.++.+.+--. --.+++++..|...++..++++|+
T Consensus 6 ~~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~ 85 (518)
T COG0728 6 KMSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEA 85 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhH
Confidence 34677788888889999999999999999987 885 567999999999965333 334578999999999988777777
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHc-CC--CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCChhHH
Q 043161 114 LGVYMQRSWLILSVTCVCLLPI-YCFASPILKLL-GQ--EEQIADLAGQFTILTIPQLFSLAINFPTQKFLQAQSKVSAF 189 (444)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~-~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 189 (444)
.++..+........+.+..+++ .++.+++.+.. .. |++....+....+++.+..++.++.....+.+++.+|...+
T Consensus 86 ~~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~ 165 (518)
T COG0728 86 ARFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIP 165 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechh
Confidence 7777777665555555555554 67777777444 33 23333368888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCHHhHHhHHHHHHHHhHHHHH
Q 043161 190 AWIGFVALVVHIVMLYVFIYVFDWGMTGAAIAYDISSWIIAIGQVIYVIGWCKETWHGLSRAAFIEIWAFVRLSLASAVM 269 (444)
Q Consensus 190 ~~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 269 (444)
.+..+..++.-+.....+.+.......+.++++.++-+.+.++.+..++|.......++..++ ++.|++.+.-.|..+.
T Consensus 166 a~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~~~~~-~~lk~~~~~~~p~~l~ 244 (518)
T COG0728 166 AFAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRFGFKD-PGLKRFLKLMLPALLG 244 (518)
T ss_pred hhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCCCCc-hhHHHHHHHHHHHHHH
Confidence 999998888777565555554322367889999999999999999998853211111222222 6799999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCchHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 043161 270 LCLEIWYMMSIIILTGHLDNAIVAVGSLSVCMNLNGWEA-MLFIGINAAISVRVSNELGLGHPRAAKYSVYVTVFQSLLI 348 (444)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~~-~~~~~i~~a~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (444)
....+++..+++.+.+.+.++..+ .++.++++.+++. .+..+++++..|.+||+..++|.++.++..+++.+.++.+
T Consensus 245 ~sisQi~lli~~~iAS~l~~Gsis--~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~lll 322 (518)
T COG0728 245 VSISQINLLIDTAIASFLAEGSVS--WLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLTLLL 322 (518)
T ss_pred HHHHHHHHHHHHHHHHhhccccHH--HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHH
Confidence 999999999999999999866544 9999999999999 6789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhccCC----cHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCcchhhHHHHHHHHHHhhHH
Q 043161 349 GVLFMVIILITKDYFAIIFTS----SAELQQAVAKLAFLLGITMVLNSVQPVISGVAIGGGWQAMVAYINIGSYYIFGLP 424 (444)
Q Consensus 349 ~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 424 (444)
.+|.++++.++++|+.++++. ++++.....+.+..++++.++..+..+....+++.+|+|.|+.+++++ .++++.
T Consensus 323 ~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP~~i~ii~-~~~n~~ 401 (518)
T COG0728 323 TLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTPMKIAIIS-LVVNIL 401 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcChHHHHHH-HHHHHH
Confidence 999999999999999999853 456678889999999999999999999999999999999999999999 688999
Q ss_pred HHHHHHHhcCCCc
Q 043161 425 LGYLLGYTANLGV 437 (444)
Q Consensus 425 l~~~l~~~~~~~~ 437 (444)
+++.+...++.++
T Consensus 402 l~~~l~~~~~~~g 414 (518)
T COG0728 402 LNLLLIPPLGHVG 414 (518)
T ss_pred HHHHHHhhccchH
Confidence 9988888777655
No 14
>PRK10459 colanic acid exporter; Provisional
Probab=99.96 E-value=2.9e-25 Score=219.62 Aligned_cols=375 Identities=13% Similarity=0.100 Sum_probs=296.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhc-ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCccchH
Q 043161 37 TVKMWKIATPIVFNILCNYGTNSFTNIFVGHI-GEIELSSVTISLSVIGTFSFGFMLGMGSALETLCGQAFGAGQVHMLG 115 (444)
Q Consensus 37 ~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~~-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~ 115 (444)
.++..|.+.+..++++...+.+++...+++|+ ||+++|.++.+..+.++.......|++++. .|. +|++ +
T Consensus 4 ~~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~ai----i~~---~~~~--~ 74 (492)
T PRK10459 4 REKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASI----IQR---QDIS--H 74 (492)
T ss_pred HHHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHH----Hhc---ccCC--H
Confidence 36678889999999999999999999999997 999999999999999877666677777764 221 1211 2
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCChhHHHHHHH
Q 043161 116 VYMQRSWLILSVTCVCLLPI-YCFASPILKLLGQEEQIADLAGQFTILTIPQLFSLAINFPTQKFLQAQSKVSAFAWIGF 194 (444)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 194 (444)
+..+.......+.+++..++ +.+.+++...++ +++. ...+++..+..++..+.....+.++..++.+.....+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~ 149 (492)
T PRK10459 75 LQLSTLYWLNVGLGIVVFVLVFLLSPLIADFYH-NPEL----APLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEI 149 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-Chhh----HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHH
Confidence 34455556666666666554 445555555443 4442 34577777888888888889999999999999999888
Q ss_pred HHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCHHhHHhHHHHHHHHhHHHHHHHHHH
Q 043161 195 VALVVHIVMLYVFIYVFDWGMTGAAIAYDISSWIIAIGQVIYVIGWCKETWHGLSRAAFIEIWAFVRLSLASAVMLCLEI 274 (444)
Q Consensus 195 ~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 274 (444)
...+....+...+.. .++|+.+.+++..+++.+..+......+|+.+.++ ..+++..|++++++.|...++....
T Consensus 150 ~~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~k~ll~~~~~~~~~~~~~~ 224 (492)
T PRK10459 150 SAVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFGYFGRKIYRPAL----HFSLASVKPNLSFGAWQTAERIINY 224 (492)
T ss_pred HHHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHhcccCCccc----eecHHHHHHHHhhhHHHHHHHHHHH
Confidence 888877777666554 37899999999999988877655433333222111 1123568999999999999999999
Q ss_pred HHHHHHHHHHhcCCchHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHH
Q 043161 275 WYMMSIIILTGHLDNAIVAVGSLSVCMNLNGWEAM-LFIGINAAISVRVSNELGLGHPRAAKYSVYVTVFQSLLIGVLFM 353 (444)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~~~-~~~~i~~a~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (444)
+....|+.+++.+.+ +.++|.|+.+.++.+.+.. +...++++..|..++. ++|.++.++..++..++...+++|.+
T Consensus 225 ~~~~~d~~~lg~~lg-~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p~~ 301 (492)
T PRK10459 225 LNTNIDTILIGRILG-AEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEKLRVGFLKLLSVLGIINFPLL 301 (492)
T ss_pred HHhcCchhhhhHhhc-hHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998877655 4468899999999987654 4556788999999985 57889999999999999999999999
Q ss_pred HHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCcchhhHHHHHHHHHHhhHHHHHHHHHhc
Q 043161 354 VIILITKDYFAIIFTSSAELQQAVAKLAFLLGITMVLNSVQPVISGVAIGGGWQAMVAYINIGSYYIFGLPLGYLLGYTA 433 (444)
Q Consensus 354 ~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~ 433 (444)
+++.++++++..++.+|+ +..+...++++++..++..+.......+++.||+|..+..++.. .++.+|..+++.+.+
T Consensus 302 ~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~-~~~~i~~~~~~~~~~ 378 (492)
T PRK10459 302 LGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFK-TFLFIPAIVIGGQLA 378 (492)
T ss_pred HHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHH-HHHHHHHHHHHHhhc
Confidence 999999999999988765 67788999999999999999999999999999999999898887 577888888887766
Q ss_pred CCC
Q 043161 434 NLG 436 (444)
Q Consensus 434 ~~~ 436 (444)
|..
T Consensus 379 G~~ 381 (492)
T PRK10459 379 GLI 381 (492)
T ss_pred cHH
Confidence 543
No 15
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.95 E-value=1.2e-24 Score=214.78 Aligned_cols=389 Identities=16% Similarity=0.139 Sum_probs=303.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhc-ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCccc
Q 043161 35 TETVKMWKIATPIVFNILCNYGTNSFTNIFVGHI-GEIELSSVTISLSVIGTFSFGFMLGMGSALETLCGQAFGAGQVHM 113 (444)
Q Consensus 35 ~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~~-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~ 113 (444)
+..+++.|.+.....+++...+.+++....++|. |++++|.++.+.++.+++......|++.+..+.++++.++++++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~ 82 (480)
T COG2244 3 SLKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLL 82 (480)
T ss_pred hHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHH
Confidence 3557888999999999999999999999999997 999999999999999987766778999998888888765554444
Q ss_pred hHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCChhHHHHH
Q 043161 114 LGVY-MQRSWLILSVTCVCLLPIYCFASPILKLLGQEEQIADLAGQFTILTIPQLFSLAINFPTQKFLQAQSKVSAFAWI 192 (444)
Q Consensus 114 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 192 (444)
.+.. ...........+++.........+. ++ .....++...+..+.........+.+|+.++.+.....
T Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (480)
T COG2244 83 LILLSVLLLLLLALILLLLLLLIAYLLAPI------DP----VLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALS 152 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc------Ch----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhH
Confidence 4443 3333333333333332222222111 22 23345678888899999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCHHhHHhHHHHHHHHhHHHHHHHH
Q 043161 193 GFVALVVHIVMLYVFIYVFDWGMTGAAIAYDISSWIIAIGQVIYVIGWCKETWHGLSRAAFIEIWAFVRLSLASAVMLCL 272 (444)
Q Consensus 193 ~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 272 (444)
...+ ..-......+.. .......++...+..........+.+++.+...+......++..|+.+++++|....+..
T Consensus 153 ~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~ 228 (480)
T COG2244 153 IVSS-IFLLAAVFALLF---AALGLAVWALVLGAVVSLLVLLILLGKKKRGLKRPILRFSLALLKELLRFGLPLLLSSLL 228 (480)
T ss_pred HHHH-HHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHhhHHHHHHHH
Confidence 4444 111122222221 244556666677766666655555542222222212222357899999999999999999
Q ss_pred HHHHHHHHHHHHhcCCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHH
Q 043161 273 EIWYMMSIIILTGHLDNAIVAVGSLSVCMNLNGWEAMLFIGINAAISVRVSNELGLGHPRAAKYSVYVTVFQSLLIGVLF 352 (444)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~~~~~~~i~~a~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (444)
..+....|+++++.+-+ +..+|.|+.+.++......+..+++++..|.+++..+++|.++.++..++..++...+++|.
T Consensus 229 ~~l~~~~D~~~i~~~l~-~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 307 (480)
T COG2244 229 NFLFTNIDTLLLGLFLG-PAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIPA 307 (480)
T ss_pred HHHHHHHHHHHHHHHhh-hhHheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988887755 44678999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCcchhhHHHHHHHHHHhhHHHHHHHHHh
Q 043161 353 MVIILITKDYFAIIFTSSAELQQAVAKLAFLLGITMVLNSVQPVISGVAIGGGWQAMVAYINIGSYYIFGLPLGYLLGYT 432 (444)
Q Consensus 353 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~ 432 (444)
.+++..+++++..++.+++ +..+...+.+++++..+.+........+++.||++..++.+..+ .+.++.+.+++++.
T Consensus 308 ~~~l~~~~~~~i~~~fg~~--~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~i~~~~l~~~li~~ 384 (480)
T COG2244 308 LLGLLLLAPPIITLLFGEK--YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLIS-ALLNLILNLLLIPR 384 (480)
T ss_pred HHHHHHHHhhhheeecCCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHH-HHHHHHHHhHHHHh
Confidence 9999999999999998876 44488899999999999999999999999999999999999998 57889999999999
Q ss_pred cCCCceEEe
Q 043161 433 ANLGVTVYL 441 (444)
Q Consensus 433 ~~~~~~g~~ 441 (444)
+|..+.+..
T Consensus 385 ~g~~g~~~a 393 (480)
T COG2244 385 FGLIGAAIA 393 (480)
T ss_pred hhhhhHHHH
Confidence 888776654
No 16
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.91 E-value=5.7e-22 Score=193.56 Aligned_cols=208 Identities=15% Similarity=0.233 Sum_probs=189.9
Q ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCC
Q 043161 30 KSVFWTETVKMWKIATPIVFNILCNYGTNSFTNIFVGHIGEIELSSVTISLSVIGTFSFGFMLGMGSALETLCGQAFGAG 109 (444)
Q Consensus 30 ~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~ 109 (444)
.+.+++..|+++|.++|.+++++.......+|..+++++|++++++++++.++..+. ..+..|++++.++.++|++|+|
T Consensus 228 ~~~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l~-~~~~~gi~~a~~~lvgq~~Ga~ 306 (464)
T PRK00187 228 SRPSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSVA-FMVPVGLSYAVTMRVGQHYGAG 306 (464)
T ss_pred cCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCC
Confidence 345677899999999999999999999999999999999999999999999998754 6789999999999999999999
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCC--CH---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHc
Q 043161 110 QVHMLGVYMQRSWLILSVTCVCLLPI-YCFASPILKLLGQ--EE---QIADLAGQFTILTIPQLFSLAINFPTQKFLQAQ 183 (444)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~--~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 183 (444)
|+|++++..+.++.++.+.+++..++ +.+.+++.+++.. ++ |+.+.+..|+++.+++.++..++.+..+.+|+.
T Consensus 307 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~ 386 (464)
T PRK00187 307 RLLEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGL 386 (464)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcc
Confidence 99999999999999999999887765 7889999999853 43 678889999999999999999999999999999
Q ss_pred CChhHHHHHHHHHH-HHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHH
Q 043161 184 SKVSAFAWIGFVAL-VVHIVMLYVFIYVFDWGMTGAAIAYDISSWIIAIGQVIYVI 238 (444)
Q Consensus 184 ~~~~~~~~~~~~~~-~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~ 238 (444)
||++.+++.++++. ++++++++++.+.+++|+.|+++++.+++.+..+.....++
T Consensus 387 G~~~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~ 442 (464)
T PRK00187 387 KDARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFE 442 (464)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999997 99999999999877899999999999999998876655553
No 17
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.89 E-value=4.8e-21 Score=187.56 Aligned_cols=208 Identities=19% Similarity=0.222 Sum_probs=192.5
Q ss_pred hhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCC
Q 043161 31 SVFWTETVKMWKIATPIVFNILCNYGTNSFTNIFVGHIGEIELSSVTISLSVIGTFSFGFMLGMGSALETLCGQAFGAGQ 110 (444)
Q Consensus 31 ~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~ 110 (444)
+.+++..|++++.++|..++++.......++..+++++|++++++++++.++.++. ..+..|++.+.++.++|++|+||
T Consensus 232 ~~~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~-~~~~~gl~~a~~~~v~~~~Ga~~ 310 (456)
T PRK01766 232 KPDWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSLL-FMLPLSLAMALTIRVGFELGAGR 310 (456)
T ss_pred CCCHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCC
Confidence 34667899999999999999999999999999999999999999999999998865 56889999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCChhHH
Q 043161 111 VHMLGVYMQRSWLILSVTCVCLLPI-YCFASPILKLLGQEEQIADLAGQFTILTIPQLFSLAINFPTQKFLQAQSKVSAF 189 (444)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 189 (444)
++++++..+.+..++...+++..++ +.+.+++.+++..|+|+.+.+..++++..+..++..++.+..+.+||.||++.+
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~ 390 (456)
T PRK01766 311 TLDARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVI 390 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHH
Confidence 9999999999999999999887755 789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHh
Q 043161 190 AWIGFVAL-VVHIVMLYVFIYVFDWGMTGAAIAYDISSWIIAIGQVIYVIG 239 (444)
Q Consensus 190 ~~~~~~~~-~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 239 (444)
+..++++. ++++++.+++.+..++|+.|+++++.+++.+..++..++++|
T Consensus 391 ~~~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~ 441 (456)
T PRK01766 391 FFITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRK 441 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHH
Confidence 99999987 789999999887778999999999999999999877777653
No 18
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.89 E-value=1.5e-20 Score=182.03 Aligned_cols=210 Identities=17% Similarity=0.247 Sum_probs=196.1
Q ss_pred hhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhc
Q 043161 28 EAKSVFWTETVKMWKIATPIVFNILCNYGTNSFTNIFVGHIGEIELSSVTISLSVIGTFSFGFMLGMGSALETLCGQAFG 107 (444)
Q Consensus 28 ~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g 107 (444)
+..+++++..|+++|.+.|..++++.......+.+.+++++|++.+|+++++.++.++. ..+..|++++.++.++|++|
T Consensus 231 ~~~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~-~~~~~gi~~a~~~lvG~~~G 309 (455)
T COG0534 231 KLLKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFI-FMPPFGIAQAVTILVGQNLG 309 (455)
T ss_pred hccCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhC
Confidence 34467889999999999999999999999999999999999999999999999999865 67999999999999999999
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCh
Q 043161 108 AGQVHMLGVYMQRSWLILSVTCVCLLPI-YCFASPILKLLGQEEQIADLAGQFTILTIPQLFSLAINFPTQKFLQAQSKV 186 (444)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~ 186 (444)
+||+|++++..+.+..++.++++...++ +.+++++..+|.+|+|+.+.+..++++..+..++.+.+.+..+.+||.||+
T Consensus 310 a~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~ 389 (455)
T COG0534 310 AGNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDA 389 (455)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 9999999999999999999999888865 899999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHH-HHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHh
Q 043161 187 SAFAWIGFVAL-VVHIVMLYVFIYVFDWGMTGAAIAYDISSWIIAIGQVIYVIG 239 (444)
Q Consensus 187 ~~~~~~~~~~~-~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 239 (444)
+.+++.++++. .+.+++.+++.+.. +|..|.|++...++.+..+...++++|
T Consensus 390 ~~~~~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~ 442 (455)
T COG0534 390 KIPFIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRR 442 (455)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999986 66788888888764 899999999999999999988888774
No 19
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.88 E-value=4e-20 Score=180.74 Aligned_cols=206 Identities=13% Similarity=0.183 Sum_probs=190.2
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCc
Q 043161 32 VFWTETVKMWKIATPIVFNILCNYGTNSFTNIFVGHIGEIELSSVTISLSVIGTFSFGFMLGMGSALETLCGQAFGAGQV 111 (444)
Q Consensus 32 ~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~ 111 (444)
.+++..|+++|.+.|..++.....+...+.+.+++++|++++++++++.++.++. ..+..|++++.++.++|++|++|.
T Consensus 253 ~~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~~~-~~~~~gi~~A~~~lvg~~~Ga~~~ 331 (478)
T PRK10189 253 LNFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAALI-NLPGNALGSASTIITGTRLGKGQI 331 (478)
T ss_pred CCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCH
Confidence 4678899999999999999999999999999999999999999999999999865 668999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCChhHHH
Q 043161 112 HMLGVYMQRSWLILSVTCVCLLPI-YCFASPILKLLGQEEQIADLAGQFTILTIPQLFSLAINFPTQKFLQAQSKVSAFA 190 (444)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 190 (444)
|++++..+.+..++.+.++.+.++ +.+++++..+|.+|+|+.+.+..++++.++..++.+.+.+..+.+||.||++.++
T Consensus 332 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~ 411 (478)
T PRK10189 332 AQAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAM 411 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHH
Confidence 999999999999999988888765 7889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-HHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHH
Q 043161 191 WIGFVAL-VVHIVMLYVFIYVFDWGMTGAAIAYDISSWIIAIGQVIYVI 238 (444)
Q Consensus 191 ~~~~~~~-~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~ 238 (444)
+.++.+. ++.+++.+++....++|+.|.+++..+++.+..++..+.++
T Consensus 412 ~i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~ 460 (478)
T PRK10189 412 WVSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMV 460 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999886 78888888887767899999999999999999887776665
No 20
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.87 E-value=5.4e-20 Score=179.43 Aligned_cols=209 Identities=11% Similarity=0.162 Sum_probs=189.0
Q ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcCh-hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcC
Q 043161 30 KSVFWTETVKMWKIATPIVFNILCNYGTNSFTNIFVGHIGE-IELSSVTISLSVIGTFSFGFMLGMGSALETLCGQAFGA 108 (444)
Q Consensus 30 ~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~~g~-~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~ 108 (444)
++.+++..|++++.+.|..++.....+...+.+.+++++|+ +++++++++.++.++. ..+..|++++.++.++|++|+
T Consensus 226 ~~~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~~-~~~~~gi~~a~~~lvg~~~Ga 304 (453)
T PRK09575 226 LRFNWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVLY-YLVAEGIAEGMQPPVSYYFGA 304 (453)
T ss_pred CCcCHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHhcC
Confidence 34567789999999999999999999999999999999974 6899999999998765 678999999999999999999
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCC-CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCh
Q 043161 109 GQVHMLGVYMQRSWLILSVTCVCLLPI-YCFASPILKLLGQ-EEQIADLAGQFTILTIPQLFSLAINFPTQKFLQAQSKV 186 (444)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~ 186 (444)
||+|++++..+.++.++...+++..++ +.+++++..++.. |+|+.+.+.+|+++.+++.++..+..+..+++||.||+
T Consensus 305 ~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~ 384 (453)
T PRK09575 305 RQYDNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQG 384 (453)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 999999999999999999999988865 7899999999985 78899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHhhh
Q 043161 187 SAFAWIGFVALVVHIVMLYVFIYVFDWGMTGAAIAYDISSWIIAIGQVIYVIGWC 241 (444)
Q Consensus 187 ~~~~~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~ 241 (444)
+.+++.+....++++++.+++... +|+.|+|+++.+++.+..++..++++|+.
T Consensus 385 ~~~~~~~~~~~~v~ip~~~ll~~~--~G~~Gvw~a~~~~~~~~~~~~~~~~~~~~ 437 (453)
T PRK09575 385 GKALFISIGNMLIQLPFLFILPKW--LGVDGVWLAMPLSNIALSLVVAPMLWRDV 437 (453)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHH--HCcchHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888899888887643 69999999999999999888877776433
No 21
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.86 E-value=8e-19 Score=174.43 Aligned_cols=231 Identities=13% Similarity=0.073 Sum_probs=195.0
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCc
Q 043161 32 VFWTETVKMWKIATPIVFNILCNYGTNSFTNIFVGHIGEIELSSVTISLSVIGTFSFGFMLGMGSALETLCGQAFGAGQV 111 (444)
Q Consensus 32 ~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~ 111 (444)
.+++..|++++.+.|..++++...+...+|+.+.+++|++++++|+.+.++.+.....+..+++++..|.++++.+++|+
T Consensus 217 ~~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~ 296 (502)
T TIGR01695 217 FRDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNW 296 (502)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 35578899999999999999999999999998855569999999999999987553446779999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCC----CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCh
Q 043161 112 HMLGVYMQRSWLILSVTCVCLLPI-YCFASPILKLLGQ----EEQIADLAGQFTILTIPQLFSLAINFPTQKFLQAQSKV 186 (444)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~ 186 (444)
++.++..+++.......+++..++ ..+++++..++.+ |+|..+.+.+++++.++..++..+..+..+.+++.||+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~ 376 (502)
T TIGR01695 297 NELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDT 376 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCC
Confidence 999999999999999999998865 7889999988765 45778889999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCHHhHHhHHHHHHHHhHH
Q 043161 187 SAFAWIGFVALVVHIVMLYVFIYVFDWGMTGAAIAYDISSWIIAIGQVIYVIGWCKETWHGLSRAAFIEIWAFVRLSLAS 266 (444)
Q Consensus 187 ~~~~~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 266 (444)
+.+++.+....++++++++++++. +|..|+++++.+++.+..++..++.+|+.+.. . ..+..+++.|...+.
T Consensus 377 ~~~~~~~~~~~~i~i~l~~~l~~~--~G~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~as 448 (502)
T TIGR01695 377 RTPFINSVISVVLNALLSLLLIFP--LGLVGIALATSAASMVSSVLLYLMLNRRLKGI---L---PFGVLKVLAKLVIAS 448 (502)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcC---C---chHHHHHHHHHHHHH
Confidence 999999999999999999998764 69999999999999999988877776543211 0 113355555655554
Q ss_pred HHHH
Q 043161 267 AVML 270 (444)
Q Consensus 267 ~~~~ 270 (444)
.+..
T Consensus 449 ~~m~ 452 (502)
T TIGR01695 449 AIIG 452 (502)
T ss_pred HHHH
Confidence 4443
No 22
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.83 E-value=1.3e-18 Score=168.40 Aligned_cols=188 Identities=15% Similarity=0.128 Sum_probs=176.3
Q ss_pred HhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHH
Q 043161 254 IEIWAFVRLSLASAVMLCLEIWYMMSIIILTGHLDNAIVAVGSLSVCMNLNGWEAMLFIGINAAISVRVSNELGLGHPRA 333 (444)
Q Consensus 254 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~~~~~~~i~~a~~~~~s~~~~~~~~~~ 333 (444)
++.|++++.++|..++++.......+|+.+++++++ +.++++.+++.++.++...+..+++.+..+.+||++|++|+++
T Consensus 6 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g-~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~ 84 (441)
T PRK10367 6 SSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDS-PVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQA 84 (441)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 458899999999999999999999999999999854 4467799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCcchhhHHH
Q 043161 334 AKYSVYVTVFQSLLIGVLFMVIILITKDYFAIIFTSSAELQQAVAKLAFLLGITMVLNSVQPVISGVAIGGGWQAMVAYI 413 (444)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 413 (444)
+++..++++..++.++++..+....+.+++.++++.|+|+.+.+.+|+++..++.++..+.....+.+++.||+|.+++.
T Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~~ 164 (441)
T PRK10367 85 LARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVIL 164 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHH
Confidence 99999999999999999988888888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHHHhcCCCceEEecc
Q 043161 414 NIGSYYIFGLPLGYLLGYTANLGVTVYLHT 443 (444)
Q Consensus 414 ~~~~~~~~~i~l~~~l~~~~~~~~~g~~~~ 443 (444)
++++ .++++++.+++.+.+++|+.|.+.+
T Consensus 165 ~ii~-~~vni~l~~~lI~~~~lGv~Gaa~A 193 (441)
T PRK10367 165 LVVG-NILNIVLDLWLVMGLHMNVQGAALA 193 (441)
T ss_pred HHHH-HHHHHHHHHHHHHHcCCccHHHHHH
Confidence 9999 6889999999999899999988765
No 23
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.80 E-value=5e-16 Score=141.56 Aligned_cols=272 Identities=16% Similarity=0.183 Sum_probs=204.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhhc-ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCccchHHHH
Q 043161 40 MWKIATPIVFNILCNYGTNSFTNIFVGHI-GEIELSSVTISLSVIGTFSFGFMLGMGSALETLCGQAFGAGQVHMLGVYM 118 (444)
Q Consensus 40 i~~~~~p~~~~~~~~~~~~~~~~~~i~~~-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~ 118 (444)
+.|.+.....+++...+.+++...+++|. |++++|.++...++.+++......|++++....+++...+ +++.+...
T Consensus 1 l~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~ 78 (273)
T PF01943_consen 1 LLKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYF 78 (273)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHH
Confidence 35778888999999999999999999997 9999999999999998776656889999988888876432 23334444
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 043161 119 QRSWLILSVTCVCLLPIYCFASPILKLLGQEEQIADLAGQFTILTIPQLFSLAINFPTQKFLQAQSKVSAFAWIGFVALV 198 (444)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 198 (444)
........+.+++...... +...+..++ ... .+........+..........++++.++.+.....++...+
T Consensus 79 ~~~~~~~~~~~~i~~~~~~----~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (273)
T PF01943_consen 79 SSVLFLLLIFSLIFLLILL----IASFFGNPS-LSL---ILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSL 150 (273)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHcCCch-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444433333333222222 222333332 211 12222222225677888899999999999999999999988
Q ss_pred HHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCHHhHHhHHHHHHHHhHHHHHHHHHHHHHH
Q 043161 199 VHIVMLYVFIYVFDWGMTGAAIAYDISSWIIAIGQVIYVIGWCKETWHGLSRAAFIEIWAFVRLSLASAVMLCLEIWYMM 278 (444)
Q Consensus 199 ~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 278 (444)
...++...++.. +.++.+..++..++..+..++..++.+|+.+.++ +..+++..|++++.+.|..+.+....+...
T Consensus 151 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (273)
T PF01943_consen 151 LSLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKLRPRF---SFFSKKFFKEILRFGLPLFLSSLLSWLYSQ 226 (273)
T ss_pred HHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc---cccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888777666654 4458889999999999888888888775543222 222257799999999999999999999999
Q ss_pred HHHHHHhcCCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043161 279 SIIILTGHLDNAIVAVGSLSVCMNLNGWEAMLFIGINAAISVRVSNEL 326 (444)
Q Consensus 279 ~~~~~~~~~~~~~~~v~~~~~~~~i~~~~~~~~~~i~~a~~~~~s~~~ 326 (444)
.|..+++.+.+ ..++|.|+++.++......+..++.++..|.++|.+
T Consensus 227 ~d~~ii~~~~g-~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l~ 273 (273)
T PF01943_consen 227 IDRLIIGYFLG-PEAVGIYSVAYRLASAISFLLSSISTVLFPRLSRLW 273 (273)
T ss_pred hHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999888866 446889999999999999999999999999999863
No 24
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.80 E-value=1.6e-16 Score=154.22 Aligned_cols=211 Identities=14% Similarity=0.113 Sum_probs=191.9
Q ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCC
Q 043161 30 KSVFWTETVKMWKIATPIVFNILCNYGTNSFTNIFVGHIGEIELSSVTISLSVIGTFSFGFMLGMGSALETLCGQAFGAG 109 (444)
Q Consensus 30 ~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~ 109 (444)
++..++..|++++...|..++....++...+|+.+.+++++.++++++.+.++.+.....+..+++++..|.+++...++
T Consensus 190 ~~~~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~ 269 (451)
T PF03023_consen 190 FDWRDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEG 269 (451)
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33445678999999999999999999999999999999999999999999999997766778899999999999999999
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcC----CCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC
Q 043161 110 QVHMLGVYMQRSWLILSVTCVCLLPI-YCFASPILKLLG----QEEQIADLAGQFTILTIPQLFSLAINFPTQKFLQAQS 184 (444)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 184 (444)
|+++.++..++.+.....+.+|.++. +.+++++++.+. -+.|..+.+...+++++++.++..+..++...+.+.+
T Consensus 270 d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~ 349 (451)
T PF03023_consen 270 DWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALG 349 (451)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999999865 899999998764 2566677889999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHhhhh
Q 043161 185 KVSAFAWIGFVALVVHIVMLYVFIYVFDWGMTGAAIAYDISSWIIAIGQVIYVIGWCK 242 (444)
Q Consensus 185 ~~~~~~~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~ 242 (444)
|+|.++..+.++.++|++++..+... +|..|.++++.++..+..++..+.++|+.+
T Consensus 350 ~~~~~~~~~~~~~~lni~l~~~l~~~--~g~~Glala~sl~~~i~~~~l~~~l~r~~~ 405 (451)
T PF03023_consen 350 DTKTPVRISVISVVLNIILSILLVPF--FGVAGLALATSLSAIISALLLYILLRRRLG 405 (451)
T ss_pred CcHhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999888874 699999999999999999988888875544
No 25
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.78 E-value=2.6e-16 Score=155.98 Aligned_cols=205 Identities=14% Similarity=0.120 Sum_probs=173.2
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhc-Ch------h---HHHHH-HHHHHHHHHHHHHHHHHHHHhHHH
Q 043161 32 VFWTETVKMWKIATPIVFNILCNYGTNSFTNIFVGHI-GE------I---ELSSV-TISLSVIGTFSFGFMLGMGSALET 100 (444)
Q Consensus 32 ~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~~-g~------~---~~~~~-~~~~~~~~~~~~~~~~gl~~~~~~ 100 (444)
.+++..|++++.+.|..++++...+...+|+.++++. ++ + .+|.+ +.+.++.+.. ..+..+++++..|
T Consensus 219 ~~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~-~~~~~~l~~~~~p 297 (488)
T TIGR02900 219 EGKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFP-AVITSSLSTALVP 297 (488)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhH-HHHHHHHHHHHHH
Confidence 3456889999999999999999999999999999885 32 1 22322 3445555544 4567899999999
Q ss_pred HHHhhhcCCCccchHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 043161 101 LCGQAFGAGQVHMLGVYMQRSWLILSVTCVCLLPI-YCFASPILKLLGQEEQIADLAGQFTILTIPQLFSLAINFPTQKF 179 (444)
Q Consensus 101 ~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 179 (444)
.++++.|++|+|+.++..++...+....+++..++ ..++++++.++.+++ ++.++++++++..++..+.....+.
T Consensus 298 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~----~~~~~l~i~~~~~~~~~~~~~~~~~ 373 (488)
T TIGR02900 298 DISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRP----DAGNFIRVLAPSFPFLYFSAPLQSI 373 (488)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888765 788899988887543 3567899999999999999999999
Q ss_pred HHHcCChhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHhhh
Q 043161 180 LQAQSKVSAFAWIGFVALVVHIVMLYVFIYVFDWGMTGAAIAYDISSWIIAIGQVIYVIGWC 241 (444)
Q Consensus 180 l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~ 241 (444)
+++.||+|.+++.++...+++++++++++....+|+.|+++++.+++.+..++..++.+|..
T Consensus 374 l~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~~ 435 (488)
T TIGR02900 374 LQGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKNI 435 (488)
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999887333579999999999999999998888776543
No 26
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.77 E-value=8.9e-19 Score=146.49 Aligned_cols=162 Identities=24% Similarity=0.437 Sum_probs=156.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 043161 265 ASAVMLCLEIWYMMSIIILTGHLDNAIVAVGSLSVCMNLNGWEAMLFIGINAAISVRVSNELGLGHPRAAKYSVYVTVFQ 344 (444)
Q Consensus 265 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~~~~~~~i~~a~~~~~s~~~~~~~~~~~~~~~~~~~~~ 344 (444)
|..++++.+...+.+++.+++++|+ .++++++++.++.++...+..+++++..+.+|+++|++|++++++..+++..+
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~--~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~ 78 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGP--EALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLL 78 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTT--CCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCH--HHHHHHHHHHHHHHHHhhhcccccccccceeeccccccccccccccccccccc
Confidence 8899999999999999999999975 45669999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCcchhhHHHHHHHHHHhhHH
Q 043161 345 SLLIGVLFMVIILITKDYFAIIFTSSAELQQAVAKLAFLLGITMVLNSVQPVISGVAIGGGWQAMVAYINIGSYYIFGLP 424 (444)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 424 (444)
...++++.+++...+++++.++|++|+|+.+.+.+++++..++.++.++.....+++++.||+|.+++.++.+.|++++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 158 (162)
T PF01554_consen 79 SLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIP 158 (162)
T ss_dssp HHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHH
T ss_pred chhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999899999
Q ss_pred HHHH
Q 043161 425 LGYL 428 (444)
Q Consensus 425 l~~~ 428 (444)
+.|+
T Consensus 159 l~yl 162 (162)
T PF01554_consen 159 LAYL 162 (162)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9885
No 27
>PRK10459 colanic acid exporter; Provisional
Probab=99.75 E-value=6e-15 Score=146.14 Aligned_cols=202 Identities=13% Similarity=0.065 Sum_probs=172.8
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhc-ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCC
Q 043161 32 VFWTETVKMWKIATPIVFNILCNYGTNSFTNIFVGHI-GEIELSSVTISLSVIGTFSFGFMLGMGSALETLCGQAFGAGQ 110 (444)
Q Consensus 32 ~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~~-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~ 110 (444)
.+++..|++++.+.|...+++...+...+|+.+++++ |++++|.|+.+.++.+.....+...+++...|..++. ++|
T Consensus 201 ~~~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~ 278 (492)
T PRK10459 201 FSLASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDD 278 (492)
T ss_pred ecHHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCC
Confidence 4457789999999999999999999999999999998 9999999999999987554445556777888998885 567
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCChhHH
Q 043161 111 VHMLGVYMQRSWLILSVTCVCLLPI-YCFASPILKLLGQEEQIADLAGQFTILTIPQLFSLAINFPTQKFLQAQSKVSAF 189 (444)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 189 (444)
+++.++.+++........++|+.++ ..++++++.++.+++ +..+...++++++...+..........+++.||+|..
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~ 356 (492)
T PRK10459 279 TEKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLS 356 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchh
Confidence 7888999999999888889998865 788899988876654 5668899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHh
Q 043161 190 AWIGFVALVVHIVMLYVFIYVFDWGMTGAAIAYDISSWIIAIGQVIYVIG 239 (444)
Q Consensus 190 ~~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 239 (444)
...+++..++.++..+.+.. .+|+.|+++++.+++.+...+..++..|
T Consensus 357 ~~~~~~~~~~~i~~~~~~~~--~~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 357 FKWNVFKTFLFIPAIVIGGQ--LAGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888877766654 4699999999999999988888777743
No 28
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.75 E-value=1e-14 Score=139.49 Aligned_cols=214 Identities=13% Similarity=0.057 Sum_probs=190.9
Q ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCC
Q 043161 30 KSVFWTETVKMWKIATPIVFNILCNYGTNSFTNIFVGHIGEIELSSVTISLSVIGTFSFGFMLGMGSALETLCGQAFGAG 109 (444)
Q Consensus 30 ~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~ 109 (444)
+..+.+..|++.+...|..++....++...+|+.+.+.+.+..++.+..+.++.+...-.+..++++...|.+||+..++
T Consensus 224 ~~~~~~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~ 303 (518)
T COG0728 224 FGFKDPGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANG 303 (518)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 33444789999999999999999999999999999999999999999999999997766789999999999999999999
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCC----CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC
Q 043161 110 QVHMLGVYMQRSWLILSVTCVCLLPI-YCFASPILKLLGQ----EEQIADLAGQFTILTIPQLFSLAINFPTQKFLQAQS 184 (444)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 184 (444)
|+++.++..+.++....+.++|..+. ..+++|+.+.+.. +++....+.+.+.....+.++..+..++...+.+.+
T Consensus 304 ~~~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~ 383 (518)
T COG0728 304 DWPEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYARE 383 (518)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999999875 8999999987632 445566788899999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 043161 185 KVSAFAWIGFVALVVHIVMLYVFIYVFDWGMTGAAIAYDISSWIIAIGQVIYVIGWCKETW 245 (444)
Q Consensus 185 ~~~~~~~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~ 245 (444)
|+|.|+++.+++.++|+.+++.+... +|..|.++++.++.+++..+.++..+|+....+
T Consensus 384 d~ktP~~i~ii~~~~n~~l~~~l~~~--~~~~giala~s~a~~~~~~ll~~~l~k~~~~~~ 442 (518)
T COG0728 384 DTKTPMKIAIISLVVNILLNLLLIPP--LGHVGLALATSLAAWVNALLLYYLLRKRLVYLP 442 (518)
T ss_pred CCCcChHHHHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 99999999999999999999777764 578889999999999999988888876554433
No 29
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.74 E-value=2e-18 Score=144.39 Aligned_cols=160 Identities=23% Similarity=0.386 Sum_probs=152.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCccchHHHHHHHHHHH
Q 043161 46 PIVFNILCNYGTNSFTNIFVGHIGEIELSSVTISLSVIGTFSFGFMLGMGSALETLCGQAFGAGQVHMLGVYMQRSWLIL 125 (444)
Q Consensus 46 p~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~ 125 (444)
|..++++...+...+|+.+++++|++++++++++.++.++. ..+..|++++..+.++|++|++|+|++++..+.+..+.
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~-~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~ 79 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSIL-FMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLS 79 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH-hhhcccccccccceeecccccccccccccccccccccc
Confidence 88999999999999999999999999999999999999865 56999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH-HHHHHH
Q 043161 126 SVTCVCLLPI-YCFASPILKLLGQEEQIADLAGQFTILTIPQLFSLAINFPTQKFLQAQSKVSAFAWIGFVAL-VVHIVM 203 (444)
Q Consensus 126 ~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~l 203 (444)
.+.+++..++ ..+.+++..+++.|+|+.+++.+|+++..+..++..+.....+++++.||++.+++.++++. ++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l 159 (162)
T PF01554_consen 80 LIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPL 159 (162)
T ss_dssp HHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhH
Confidence 9999999876 88899999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHH
Q 043161 204 LYV 206 (444)
Q Consensus 204 ~~~ 206 (444)
+++
T Consensus 160 ~yl 162 (162)
T PF01554_consen 160 AYL 162 (162)
T ss_dssp HHH
T ss_pred HhC
Confidence 874
No 30
>PRK15099 O-antigen translocase; Provisional
Probab=99.73 E-value=3.4e-15 Score=144.55 Aligned_cols=202 Identities=7% Similarity=-0.089 Sum_probs=173.3
Q ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh-cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcC
Q 043161 30 KSVFWTETVKMWKIATPIVFNILCNYGTNSFTNIFVGH-IGEIELSSVTISLSVIGTFSFGFMLGMGSALETLCGQAFGA 108 (444)
Q Consensus 30 ~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~-~g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~ 108 (444)
.+.+++..|++++.+.|..++++...+....|+.++++ +|++++|.|+.+.++.+.+...+..+++++..|.+++.
T Consensus 207 ~~~~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~--- 283 (416)
T PRK15099 207 PSWDNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL--- 283 (416)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 45567889999999999999999999999999999985 59999999999999977444568899999999999995
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCChh
Q 043161 109 GQVHMLGVYMQRSWLILSVTCVCLLPI-YCFASPILKLLGQEEQIADLAGQFTILTIPQLFSLAINFPTQKFLQAQSKVS 187 (444)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 187 (444)
+|+|+.++..++........+++..++ .+++++++.++.+++ .+++.++++++++..++..........+-+.++.+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~ 361 (416)
T PRK15099 284 TEKRDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLR 361 (416)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888988888888888877765 689999999988765 34467788898888888877777777777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHH
Q 043161 188 AFAWIGFVALVVHIVMLYVFIYVFDWGMTGAAIAYDISSWIIAIGQVIYVI 238 (444)
Q Consensus 188 ~~~~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~ 238 (444)
......+...++++++++++++. +|..|+++++.+++.+...+..+...
T Consensus 362 ~~~~~~~~~~~l~i~l~~~li~~--~G~~G~a~a~~is~~~~~~~~~~~~~ 410 (416)
T PRK15099 362 FYILAEVSQFTLLTGFAHWLIPL--HGALGAAQAYMATYIVYFSLCCGVFL 410 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888889999999999875 59999999999999999988776655
No 31
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.68 E-value=4.3e-15 Score=140.19 Aligned_cols=175 Identities=16% Similarity=0.232 Sum_probs=160.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 043161 265 ASAVMLCLEIWYMMSIIILTGHLDNAIVAVGSLSVCMNLNGWEAMLFIGINAAISVRVSNELGLGHPRAAKYSVYVTVFQ 344 (444)
Q Consensus 265 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~~~~~~~i~~a~~~~~s~~~~~~~~~~~~~~~~~~~~~ 344 (444)
|..+++....+...+++.+++++++ .++++|+.+.++..+...+..+++++..|.++++.|++|+++.++..+....+
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~ 78 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGP--VDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLL 78 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccH--HHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 6788899999999999999999985 35669999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCcchhhHHHHHHHHHHhhHH
Q 043161 345 SLLIGVLFMVIILITKDYFAIIFTSSAELQQAVAKLAFLLGITMVLNSVQPVISGVAIGGGWQAMVAYINIGSYYIFGLP 424 (444)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 424 (444)
...++++.+++..++++++.++++.|++..+.+..+++++.++.++.++.....+.+++.||.+.....++.+ .+++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~-~~~~i~ 157 (342)
T TIGR00797 79 ALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIG-NVINII 157 (342)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH-HHHHHH
Confidence 9999999999999999999999987788888899999999999999999999999999999999999999998 577899
Q ss_pred HHHHHHH-hcC-CCceEEec
Q 043161 425 LGYLLGY-TAN-LGVTVYLH 442 (444)
Q Consensus 425 l~~~l~~-~~~-~~~~g~~~ 442 (444)
+.+++.+ .+| ++..|.++
T Consensus 158 ~~~~li~~~~g~~g~~g~~~ 177 (342)
T TIGR00797 158 LNYILIFGKFGFLGIVGAAL 177 (342)
T ss_pred HhHHHHhcCccccccHHHHH
Confidence 9998887 778 77776654
No 32
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.65 E-value=8.7e-14 Score=137.54 Aligned_cols=187 Identities=19% Similarity=0.258 Sum_probs=168.8
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhc-ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCc
Q 043161 33 FWTETVKMWKIATPIVFNILCNYGTNSFTNIFVGHI-GEIELSSVTISLSVIGTFSFGFMLGMGSALETLCGQAFGAGQV 111 (444)
Q Consensus 33 ~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~~-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~ 111 (444)
.++..|+.++.+.|...+++...+.+.+|+.+++++ |++++|.|+.+.++.... ..+...++.+..|.+++...++|+
T Consensus 208 ~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~-~~~~~~l~~~l~P~~s~~~~~~~~ 286 (480)
T COG2244 208 SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLL-LIVASALNRVLFPALSRAYAEGDR 286 (480)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHH-HHHHHHHHHHHHHHHHHHHHcCcH
Confidence 368999999999999999999999999999999998 999999999888887754 668889999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCChhHHH
Q 043161 112 HMLGVYMQRSWLILSVTCVCLLPI-YCFASPILKLLGQEEQIADLAGQFTILTIPQLFSLAINFPTQKFLQAQSKVSAFA 190 (444)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 190 (444)
++.++..++........+++..++ ..+++++...+.+++. ..+...++++++..++..+.......+++.||.+...
T Consensus 287 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~--~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~ 364 (480)
T COG2244 287 KALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKY--ASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLL 364 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence 999999999999999999999876 7888899988766652 3377889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHH
Q 043161 191 WIGFVALVVHIVMLYVFIYVFDWGMTGAAIAYDIS 225 (444)
Q Consensus 191 ~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~ 225 (444)
+.+.++.++|+++++++++. +|..|++.++ .+
T Consensus 365 ~~~~~~~i~~~~l~~~li~~--~g~~g~~~a~-~~ 396 (480)
T COG2244 365 LISLISALLNLILNLLLIPR--FGLIGAAIAT-AS 396 (480)
T ss_pred HHHHHHHHHHHHHHhHHHHh--hhhhhHHHHH-HH
Confidence 99999999999999999884 5888999988 44
No 33
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.63 E-value=1.8e-12 Score=116.54 Aligned_cols=246 Identities=19% Similarity=0.217 Sum_probs=174.8
Q ss_pred HHHHHHHHHHhhc-ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCccchHHHHHHHHHHHHHHHHHHHH
Q 043161 56 GTNSFTNIFVGHI-GEIELSSVTISLSVIGTFSFGFMLGMGSALETLCGQAFGAGQVHMLGVYMQRSWLILSVTCVCLLP 134 (444)
Q Consensus 56 ~~~~~~~~~i~~~-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (444)
..+++...+++|. |++++|.|+....+..+.......|+.+.... . .++|+++.++..+.......+.+++..+
T Consensus 2 ~~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (251)
T PF13440_consen 2 GINFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR----S-AARDKQDIRSLLRFSLLVSLLLAVILAI 76 (251)
T ss_pred hHHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----h-hccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778899997 99999999999999886655456667666433 2 2345555666655555444443333332
Q ss_pred HHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 043161 135 IYCFASPILKLLGQEEQIADLAGQFTILTIPQLFSLAINFPTQKFLQAQSKVSAFAWIGFVALVVHIVMLYVFIYVFDWG 214 (444)
Q Consensus 135 ~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g 214 (444)
+ ...+...+ .+++ ...++....+..+.........+.+++++|.+.....+....+....+...+... +.+
T Consensus 77 ~---~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 147 (251)
T PF13440_consen 77 L---AILIAYFF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLYL-GLN 147 (251)
T ss_pred H---HHHHHHHh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh
Confidence 2 11122233 3332 2234556677788888899999999999999999999999988875555444443 448
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCHHhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc-CCchHHH
Q 043161 215 MTGAAIAYDISSWIIAIGQVIYVIGWCKETWHGLSRAAFIEIWAFVRLSLASAVMLCLEIWYMMSIIILTGH-LDNAIVA 293 (444)
Q Consensus 215 ~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 293 (444)
..+..++..+++.+..+..+...+++.+. ++ +.+..| ..+.+.|..+.+...+.....+..+++. ++ ..+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~--~~~ 218 (251)
T PF13440_consen 148 LWSILLAFIISALLALLISFYLLRRKLRL-----SF-KFSWRR-LLKYGLPFSLSSLLSWLLSQIDRLLIGYFLG--PEA 218 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCC-----Cc-hhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--HHH
Confidence 88888888888888777665543322111 11 222234 7899999999999999999999999888 64 446
Q ss_pred HhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 043161 294 VGSLSVCMNLNGWEA-MLFIGINAAISVRVSN 324 (444)
Q Consensus 294 v~~~~~~~~i~~~~~-~~~~~i~~a~~~~~s~ 324 (444)
+|.|+.+.++.+.+. .+..++++...|.++|
T Consensus 219 ~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar 250 (251)
T PF13440_consen 219 VGIYSVAQRLASLPASLLSSAISSVFFPKLAR 250 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 779999999999888 9999999999999987
No 34
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.08 E-value=6e-09 Score=100.80 Aligned_cols=186 Identities=15% Similarity=0.206 Sum_probs=167.5
Q ss_pred HHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCCh
Q 043161 253 FIEIWAFVRLSLASAVMLCLEIWYMMSIIILTGHLDNAIVAVGSLSVCMNLNGW-EAMLFIGINAAISVRVSNELGLGHP 331 (444)
Q Consensus 253 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~-~~~~~~~i~~a~~~~~s~~~~~~~~ 331 (444)
.++.|++.+++.|..+....+.....++..+++++|+.+.+ +.++++...+. -+.+..++..+..+..++.+|.+++
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLa--a~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~ 101 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELA--SVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKF 101 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHH--HHHHHHHhhcccchHHhhccchhhhcchHhhhccccc
Confidence 57789999999999999999999999999999999986555 88888877765 5567889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCcchhhH
Q 043161 332 RAAKYSVYVTVFQSLLIGVLFMVIILITKDYFAIIFTSSAELQQAVAKLAFLLGITMVLNSVQPVISGVAIGGGWQAMVA 411 (444)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 411 (444)
+......+++........++.+... .+.+++...+.+|+++...+..+.++.....+.+.........+|+.+++....
T Consensus 102 ~~lg~~lqrs~~~l~~~~~~~~~l~-~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~ 180 (473)
T KOG1347|consen 102 TALGVYLQRSGIVLLVQGLPISLLI-LNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLL 180 (473)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHH-HccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHH
Confidence 9999999999988888888876554 566999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHhcCCCceEEec
Q 043161 412 YINIGSYYIFGLPLGYLLGYTANLGVTVYLH 442 (444)
Q Consensus 412 ~~~~~~~~~~~i~l~~~l~~~~~~~~~g~~~ 442 (444)
++.... .++.+++.+++.+..++|..|.-.
T Consensus 181 ~~~~~~-~~lhi~~~~llv~~~~~g~~Gaal 210 (473)
T KOG1347|consen 181 VIGLVA-LVLHILLTWLLVSKLGLGIKGAAL 210 (473)
T ss_pred HHHHHH-HHHHHHHHHHhhhcccCCCccchH
Confidence 999988 788999999999999999876543
No 35
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=99.03 E-value=3.4e-07 Score=90.00 Aligned_cols=399 Identities=12% Similarity=0.034 Sum_probs=224.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhhc-ChhHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHhhhcCCCccchHHHH
Q 043161 41 WKIATPIVFNILCNYGTNSFTNIFVGHI-GEIELSSVTISLSVIG-TFSFGFMLGMGSALETLCGQAFGAGQVHMLGVYM 118 (444)
Q Consensus 41 ~~~~~p~~~~~~~~~~~~~~~~~~i~~~-g~~~~~~~~~~~~~~~-~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~ 118 (444)
.+.+.-.++.++...+.+++-+.++-|. +|+.+|..++=..+.. .+.+.-=-++-.+....=.+...++|.++..+..
T Consensus 4 ~~gas~li~lQl~sRllTFvlN~lllR~lsp~ilGi~nv~LeLl~sTILFlSRE~fR~A~lR~~~~~~~~~~~~~~~n~~ 83 (549)
T PF04506_consen 4 AKGASFLILLQLLSRLLTFVLNQLLLRFLSPEILGIANVQLELLYSTILFLSREAFRRACLRQPSSSIDKSNWAQSINLL 83 (549)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCcccHHHhhhcc
Confidence 3556677888999999999988888886 9999998865554442 2223344555555333222111111122222222
Q ss_pred HHHHHHHHHHHHHHHHH-H-Hh--HHH--HHHHc-CCCHH---HHHHHHHHHHHHHhhHHHHHHHHHH----HHHHHHcC
Q 043161 119 QRSWLILSVTCVCLLPI-Y-CF--ASP--ILKLL-GQEEQ---IADLAGQFTILTIPQLFSLAINFPT----QKFLQAQS 184 (444)
Q Consensus 119 ~~~~~~~~~~~~~~~~~-~-~~--~~~--i~~~~-~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~----~~~l~~~~ 184 (444)
+.......+..+++..+ + .. +.. ...+. ...++ ..+.....+.+...+...-.+.+.+ +..+.-..
T Consensus 84 wls~~lq~vvn~~~~~I~l~~igi~~~~~~~~~~~~~~~~~~~~~p~~~~~v~l~~~s~~iELlsEP~~il~Q~~l~~~~ 163 (549)
T PF04506_consen 84 WLSVPLQAVVNLICSYIWLAWIGIPLSILLSQYQYASISNAFVIEPYFEPSVFLYGLSAFIELLSEPLYILAQQMLFFKL 163 (549)
T ss_pred cccCcchhheehhHHHHhHhhccccHHHHHHHHHhhcchhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhe
Confidence 22222222222222111 1 00 011 11111 11111 1222233344445555554444444 44444444
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHh-cCCcc------chhHHHHHHHHHHHHHHHHHHHH--hhhh-----hhhccCCH
Q 043161 185 KVSAFAWIGFVALVVHIVMLYVFIYV-FDWGM------TGAAIAYDISSWIIAIGQVIYVI--GWCK-----ETWHGLSR 250 (444)
Q Consensus 185 ~~~~~~~~~~~~~~~~i~l~~~li~~-~~~g~------~g~~~a~~i~~~~~~~~~~~~~~--~~~~-----~~~~~~~~ 250 (444)
|.+.-........+++..+....... .+++. .-+.++..++++...+....... ...+ ....+...
T Consensus 164 Rv~~E~~A~~~k~i~t~~~v~~~~~~~~~~~~~~~~~~~~~~l~Falgq~~ys~~l~~~y~~~~~~~~~~~s~~lp~i~~ 243 (549)
T PF04506_consen 164 RVKAESLAVFAKCIVTFALVVLAERSGYGFFYFLSGQEGLAILAFALGQLAYSITLFFCYYWMYFFPFKSFSDLLPKISS 243 (549)
T ss_pred eeEechHHHHHHHHHHHHHHHHHHhcccceeeeeccchhHHHHHHHHHHHHHHHHHHhhHHhhccCcccchhhccccccc
Confidence 55555555555555554444333221 01111 11244555566555443322221 1111 11111111
Q ss_pred ---HhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc--CCc-hHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 043161 251 ---AAFIEIWAFVRLSLASAVMLCLEIWYMMSIIILTGH--LDN-AIVAVGSLSVCMNLNGWEA-MLFIGINAAISVRVS 323 (444)
Q Consensus 251 ---~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~v~~~~~~~~i~~~~~-~~~~~i~~a~~~~~s 323 (444)
.....-+++++........+....+...-+.+++.. +.+ .++ |.|++++++.+++. .+...+..+.....+
T Consensus 244 ~~~~~~~fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~Q--GvY~lv~N~GSLvaR~lF~PiEEs~~~~Fs 321 (549)
T PF04506_consen 244 GNPKSYYFDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQ--GVYALVSNYGSLVARLLFQPIEESSRLYFS 321 (549)
T ss_pred cccccccCCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHh--hHHHHHhhHHHHHHHHHhCcHHHHHHHHHH
Confidence 011124778888888999999999999999888777 544 344 49999999998876 667889999988888
Q ss_pred HhhcCCCh---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHHHhhHH
Q 043161 324 NELGLGHP---------RAAKYSVYVTVFQSLLIGVLFMVIILITKDYFAIIFTSSAELQQAVAKLAFLLGITMVLNSVQ 394 (444)
Q Consensus 324 ~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 394 (444)
+...+++. ++..+.+...++....+++.+...-...++.+.+++.++.=........++.++...++.++|
T Consensus 322 k~l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~N 401 (549)
T PF04506_consen 322 KLLSRDNSKKKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAIN 401 (549)
T ss_pred HHhcccCchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHc
Confidence 88765433 345566777777777777776666666677777777553311223578899999999999999
Q ss_pred HHHHHHHHhcCcchhhHHHHHH--HHHHhhHHHHHHHHHhcCCCceEEec
Q 043161 395 PVISGVAIGGGWQAMVAYINIG--SYYIFGLPLGYLLGYTANLGVTVYLH 442 (444)
Q Consensus 395 ~~~~~~l~~~g~~~~~~~~~~~--~~~~~~i~l~~~l~~~~~~~~~g~~~ 442 (444)
++.....++....+..-..+-. .+.++.+..+|.+... ++|..|...
T Consensus 402 Gi~EaF~~s~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~ 450 (549)
T PF04506_consen 402 GITEAFVFSVASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLIL 450 (549)
T ss_pred cHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHH
Confidence 9999999999887765333322 1124456678888887 778777644
No 36
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=99.02 E-value=2.5e-06 Score=75.40 Aligned_cols=269 Identities=12% Similarity=0.056 Sum_probs=166.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhc--Ch-hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCc
Q 043161 35 TETVKMWKIATPIVFNILCNYGTNSFTNIFVGHI--GE-IELSSVTISLSVIGTFSFGFMLGMGSALETLCGQAFGAGQV 111 (444)
Q Consensus 35 ~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~~--g~-~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~ 111 (444)
...+++.++-+|+.++.....+...+.+.-++|- .+ +.+++|+++.++.-++ ..+...+-+.... ++++++
T Consensus 8 ~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~-~sp~~~~~~igl~-----~V~s~r 81 (345)
T PF07260_consen 8 TSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFF-ASPLSMFHHIGLV-----FVNSKR 81 (345)
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH-hChhhhhHHHHHH-----Hhcchh
Confidence 5678899999999999999999999999999984 34 4599999999987654 4566666555433 334433
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHH-H-HhHHHHH-HHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCChhH
Q 043161 112 HMLGVYMQRSWLILSVTCVCLLPI-Y-CFASPIL-KLLGQEEQIADLAGQFTILTIPQLFSLAINFPTQKFLQAQSKVSA 188 (444)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~i~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 188 (444)
++.+.... ....+.+...+..++ + .+...++ ..++.++++.+.+...+.++.+--++.++....++++.=++++..
T Consensus 82 srr~~vl~-~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~i 160 (345)
T PF07260_consen 82 SRRKAVLC-MAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWI 160 (345)
T ss_pred hhHHHHHH-HHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeE
Confidence 33222222 222222222221222 2 2334444 556889999999999999999988999999999999887777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcc-ch---hHHHHHHHHHHHHHHHH-HHHH--hhhhhhhccCCHHhHHhHHHHHH
Q 043161 189 FAWIGFVALVVHIVMLYVFIYVFDWGM-TG---AAIAYDISSWIIAIGQV-IYVI--GWCKETWHGLSRAAFIEIWAFVR 261 (444)
Q Consensus 189 ~~~~~~~~~~~~i~l~~~li~~~~~g~-~g---~~~a~~i~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 261 (444)
....++...+..+++...++.. +... .. -.++...+..+.+.+.. -|+. ++......+....+...++++++
T Consensus 161 V~~aSI~~v~~qvV~v~~ll~~-~l~~~~pllipil~~y~g~~vr~t~v~LGy~~~i~~~~p~~~~~~~~~~~tl~~~l~ 239 (345)
T PF07260_consen 161 VGSASIADVIAQVVLVAILLSM-HLEPQDPLLIPILALYAGIAVRFTIVCLGYYQSIHDIIPQLSGLEKGDSATLQRMLK 239 (345)
T ss_pred eehHHHHHHHHHHHHHHHHHcc-ccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcccCCChhHHHHHH
Confidence 7766666665555555445432 1111 11 12222333322222211 1221 12111111122222356899999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhc-CCch---HHHHhHHHHHHHHHHHHHHHH
Q 043161 262 LSLASAVMLCLEIWYMMSIIILTGH-LDNA---IVAVGSLSVCMNLNGWEAMLF 311 (444)
Q Consensus 262 ~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~v~~~~~~~~i~~~~~~~~ 311 (444)
+.+|.+........+..+.+.++++ +++. ..+++...+.+......+...
T Consensus 240 F~~PL~~~~~tq~~SrplVnl~vsR~l~gs~a~~~avavl~~~ypvgh~~y~w~ 293 (345)
T PF07260_consen 240 FWWPLALVLATQRISRPLVNLFVSRDLSGSQAATEAVAVLTATYPVGHMPYGWL 293 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhhccccCCCcCcchhH
Confidence 9999999999999999999999888 5553 245555555555554444444
No 37
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.79 E-value=2.9e-05 Score=71.92 Aligned_cols=386 Identities=12% Similarity=0.022 Sum_probs=212.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhc-ChhHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHhhhcCCCcc-
Q 043161 36 ETVKMWKIATPIVFNILCNYGTNSFTNIFVGHI-GEIELSSVTISLSVIGTF-SFGFMLGMGSALETLCGQAFGAGQVH- 112 (444)
Q Consensus 36 ~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~~-g~~~~~~~~~~~~~~~~~-~~~~~~gl~~~~~~~is~~~g~~~~~- 112 (444)
...+-.+.+...+..++...+.++..+..+-|+ +++.+|..++-..+.+-. .+..--++.-+ ....|..+.|
T Consensus 6 vL~ss~~ga~~~i~~Q~~~RiiTF~lN~~liR~~s~~v~gi~nvrl~lL~sTiLFlsREair~A-----~l~~gs~~~d~ 80 (530)
T KOG2864|consen 6 VLESSFSGAVFSIRGQLLARIITFALNALLIRFLSPEVLGIVNVRLELLQSTILFLSREAIRLA-----ELRIGSEPADT 80 (530)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcChhheehhHHHHHHHHHHHHHhhHHHHHHH-----hccCCCCCCcc
Confidence 444556666777777888888877777666665 999999998766665411 12222333333 3333333323
Q ss_pred --chHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCC-CHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCChhH
Q 043161 113 --MLGVYMQRSWLILSVTCVCLLPIYCFASPILKLLGQ-EEQ-IADLAGQFTILTIPQLFSLAINFPTQKFLQAQSKVSA 188 (444)
Q Consensus 113 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 188 (444)
+..+..+.+..+..+..+++.-+ ++.+... |+. ..+.-..-..+...+...-.+...+.-..|..-+.+.
T Consensus 81 ~te~~n~~wlS~~L~~~i~~~~i~~------wl~~~~s~d~i~~~p~y~~~I~~~~~S~vvELlsEp~~iv~Q~~~~~~~ 154 (530)
T KOG2864|consen 81 WTEFINLLWLSVPLQTAINVACIYF------WLGFLSSSDEISYSPLYAFAIFIIGLSIVVELLSEPLYIVSQCGLKVQL 154 (530)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHH------HHHHhhccchhhcCchHhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 33333333433444333333322 1111111 111 1111111223333444444445555566666667777
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHhcC-CccchhHHHHHHHHHHHHHHHHHHHHhhhh------------hhhccCCHH--h
Q 043161 189 FAWIGFVALVVHIVMLY-VFIYVFD-WGMTGAAIAYDISSWIIAIGQVIYVIGWCK------------ETWHGLSRA--A 252 (444)
Q Consensus 189 ~~~~~~~~~~~~i~l~~-~li~~~~-~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~------------~~~~~~~~~--~ 252 (444)
-.+...+..+++-+..+ +++.+.+ +++.-.++|.........+...+++.+..+ ..+.+.... .
T Consensus 155 ~~i~e~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Yf~~~~s~~~~~~~~r~Sdllpk~~~n~~~ 234 (530)
T KOG2864|consen 155 RAIAEGLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFYFYIRGSIPETEPFSRFSDLLPKVSENERG 234 (530)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccchhhhhhhccCCCCCCcc
Confidence 77777777766633333 3333222 344444444444333333311122222111 000000000 0
Q ss_pred HHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcC---CchHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcC
Q 043161 253 FIEIWAFVRLSLASAVMLCLEIWYMMSIIILTGHL---DNAIVAVGSLSVCMNLNGWEA-MLFIGINAAISVRVSNELGL 328 (444)
Q Consensus 253 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~i~~~~~-~~~~~i~~a~~~~~s~~~~~ 328 (444)
.---++..+..........+.++...-+..+++.. .-++++ .|..+++..++.. .+...+-.......+|...+
T Consensus 235 ~ffd~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~Qg--vYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~ 312 (530)
T KOG2864|consen 235 IFFDNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQG--VYDLVSNYGSLLARLIFRPIEESSYIYFARLLSR 312 (530)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhh--HHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhc
Confidence 01234455555566666667777777666555532 223566 9999999998776 67788899999999998887
Q ss_pred CChHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcC
Q 043161 329 GHPRAAKYSV---YVTVFQSLLIGVLFMVIILITKDYFAIIFTSSAELQQAVAKLAFLLGITMVLNSVQPVISGVAIGGG 405 (444)
Q Consensus 329 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g 405 (444)
++.|+.++.. ....+....+++..++.=...++....++++++=.-..+...++++++..++.+++++..+...+.+
T Consensus 313 ~~qe~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~ 392 (530)
T KOG2864|consen 313 DNQENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVA 392 (530)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 7777666554 4445555555555544444556677777765331122256789999999999999999999999988
Q ss_pred cchhhHHH---HHHHHHHhhHHHHHHHHHhcCC
Q 043161 406 WQAMVAYI---NIGSYYIFGLPLGYLLGYTANL 435 (444)
Q Consensus 406 ~~~~~~~~---~~~~~~~~~i~l~~~l~~~~~~ 435 (444)
..+....- ..+. -+..+.++|++...+|.
T Consensus 393 t~~qi~~~n~~mlaf-SviflilsylL~~~~~~ 424 (530)
T KOG2864|consen 393 TSRQIDKHNKFMLAF-SVIFLILSYLLIRWFGL 424 (530)
T ss_pred cHHHHHhcccchhHH-HHHHHHHHHHHHHHhch
Confidence 76654211 1111 24456688888888765
No 38
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.69 E-value=2.1e-06 Score=84.50 Aligned_cols=206 Identities=10% Similarity=0.059 Sum_probs=161.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh--c-ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcc-
Q 043161 37 TVKMWKIATPIVFNILCNYGTNSFTNIFVGH--I-GEIELSSVTISLSVIGTFSFGFMLGMGSALETLCGQAFGAGQVH- 112 (444)
Q Consensus 37 ~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~--~-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~- 112 (444)
-++.++.......+.+.-.+.+--|+.++.. + ..++.|.|+++.++-++..=.+...+--......++...+++.+
T Consensus 252 d~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~ 331 (549)
T PF04506_consen 252 DRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKK 331 (549)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchh
Confidence 4678889999999999999999999999999 7 89999999999999987776777888888878888877654332
Q ss_pred --------chHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHc
Q 043161 113 --------MLGVYMQRSWLILSVTCVCLLPI-YCFASPILKLLGQEEQIADLAGQFTILTIPQLFSLAINFPTQKFLQAQ 183 (444)
Q Consensus 113 --------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 183 (444)
+..+.+...+.....++++.... ...++.++.+++++.=..+.+...++..+..+|+.+++.+..++.++.
T Consensus 332 ~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~ 411 (549)
T PF04506_consen 332 KQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSV 411 (549)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 24455666667777777666644 667777777775543223345778999999999999999999999998
Q ss_pred CChhHHHHHH---HHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 043161 184 SKVSAFAWIG---FVALVVHIVMLYVFIYVFDWGMTGAAIAYDISSWIIAIGQVIYVIGWCKE 243 (444)
Q Consensus 184 ~~~~~~~~~~---~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~ 243 (444)
...+.....+ .+..++.+..+++++.. ++|..|..+|.++...+..+....+++|..+.
T Consensus 412 a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~~~~ 473 (549)
T PF04506_consen 412 ASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRYFRN 473 (549)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7766555444 44456667788888876 78999999999999999999999988765443
No 39
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.60 E-value=7.1e-06 Score=66.87 Aligned_cols=81 Identities=26% Similarity=0.309 Sum_probs=73.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHh
Q 043161 160 TILTIPQLFSLAINFPTQKFLQAQSKVSAFAWIGFVALVVHIVMLYVFIYVFDWGMTGAAIAYDISSWIIAIGQVIYVIG 239 (444)
Q Consensus 160 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 239 (444)
+++++++.++.++....++.+++.||++..++.+.++.++|+++++.+++ ++|..|+++++.+++.+...+..++.+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~--~~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIP--RFGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888999999999999999999999999999999999999999999987 4699999999999999999988888876
Q ss_pred hhh
Q 043161 240 WCK 242 (444)
Q Consensus 240 ~~~ 242 (444)
+.+
T Consensus 80 ~~~ 82 (146)
T PF14667_consen 80 KIG 82 (146)
T ss_pred HhC
Confidence 543
No 40
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.27 E-value=4.5e-05 Score=70.73 Aligned_cols=202 Identities=10% Similarity=0.049 Sum_probs=149.7
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHhhc---ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCccch
Q 043161 38 VKMWKIATPIVFNILCNYGTNSFTNIFVGHI---GEIELSSVTISLSVIGTFSFGFMLGMGSALETLCGQAFGAGQVHML 114 (444)
Q Consensus 38 ~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~~---g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~ 114 (444)
++..+.......+.+.-++.+--|.++++.. +-++.|.|....++-++..=.+...+--....+.+|...++++|+.
T Consensus 239 ~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~ 318 (530)
T KOG2864|consen 239 NDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENV 318 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhH
Confidence 4455566666777778888888899998854 5668888998888887777777888888888888988887777776
Q ss_pred HHHHH---HHHHHHHHHHHHHHH-HHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCChhHHH
Q 043161 115 GVYMQ---RSWLILSVTCVCLLP-IYCFASPILKLLGQEEQIADLAGQFTILTIPQLFSLAINFPTQKFLQAQSKVSAFA 190 (444)
Q Consensus 115 ~~~~~---~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 190 (444)
++... ..+.....++++... +...++..+.++++++=....+...+++.+..+|+.+++.+..++..+....+..-
T Consensus 319 k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~ 398 (530)
T KOG2864|consen 319 KKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQID 398 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHH
Confidence 66544 445555555655443 35666777777766542233455779999999999999999999999887665543
Q ss_pred ---HHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHhhh
Q 043161 191 ---WIGFVALVVHIVMLYVFIYVFDWGMTGAAIAYDISSWIIAIGQVIYVIGWC 241 (444)
Q Consensus 191 ---~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~ 241 (444)
+...+.++...+++++++..+ |..|..+|.++...+..+...+++++..
T Consensus 399 ~~n~~mlafSviflilsylL~~~~--~~~GlIlANiiNm~lRIlys~~fI~~~y 450 (530)
T KOG2864|consen 399 KHNKFMLAFSVIFLILSYLLIRWF--GLVGLILANIINMSLRILYSLRFIRHYY 450 (530)
T ss_pred hcccchhHHHHHHHHHHHHHHHHh--chhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455677788899998865 7799999999999988888877777433
No 41
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=97.57 E-value=0.00052 Score=62.16 Aligned_cols=73 Identities=7% Similarity=0.128 Sum_probs=66.7
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhc-ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q 043161 32 VFWTETVKMWKIATPIVFNILCNYGTNSFTNIFVGHI-GEIELSSVTISLSVIGTFSFGFMLGMGSALETLCGQA 105 (444)
Q Consensus 32 ~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~~-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~ 105 (444)
.+++..|++++.+.|..++++...+....|+.+++++ |++++|.|+.+.++.... ..+...+.+...|.++|.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~g~~~vg~Y~~a~~l~~~~-~~~~~~~~~~~~P~~s~l 272 (273)
T PF01943_consen 199 FSKKFFKEILRFGLPLFLSSLLSWLYSQIDRLIIGYFLGPEAVGIYSVAYRLASAI-SFLLSSISTVLFPRLSRL 272 (273)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence 3368899999999999999999999999999999998 999999999999999865 567888999999999875
No 42
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=97.48 E-value=0.026 Score=50.62 Aligned_cols=164 Identities=12% Similarity=0.103 Sum_probs=112.4
Q ss_pred HhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc-CCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChH
Q 043161 254 IEIWAFVRLSLASAVMLCLEIWYMMSIIILTGH-LDNAIVAVGSLSVCMNLNGWEAMLFIGINAAISVRVSNELGLGHPR 332 (444)
Q Consensus 254 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~i~~~~~~~~~~i~~a~~~~~s~~~~~~~~~ 332 (444)
.++++++++-+|..++.....+.-.+.+.-+++ ..+....+|+|+++..+.-++..+...+.+.....+... .+
T Consensus 8 ~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~s~-----rs 82 (345)
T PF07260_consen 8 TSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVNSK-----RS 82 (345)
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhcch-----hh
Confidence 458899999999999999999999988877766 455455678999999999999999988888777665441 12
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHhhh-hhhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCcchhh
Q 043161 333 AAKYSVYVTVFQSLLIGVL-FMVIILITKD-YFAIIFTSSAELQQAVAKLAFLLGITMVLNSVQPVISGVAIGGGWQAMV 410 (444)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 410 (444)
-++........+.+.... ..+..--++. .+..++.-|+++-+.+...+.++.+..+++++....++++.=.+++...
T Consensus 83 -rr~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~iV 161 (345)
T PF07260_consen 83 -RRKAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWIV 161 (345)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeEe
Confidence 222222222222222111 1111111222 3445667788989999999999999999999999999998866666666
Q ss_pred HHHHHHHHHHhhHH
Q 043161 411 AYINIGSYYIFGLP 424 (444)
Q Consensus 411 ~~~~~~~~~~~~i~ 424 (444)
...++.. .+..+.
T Consensus 162 ~~aSI~~-v~~qvV 174 (345)
T PF07260_consen 162 GSASIAD-VIAQVV 174 (345)
T ss_pred ehHHHHH-HHHHHH
Confidence 5555554 333343
No 43
>COG4267 Predicted membrane protein [Function unknown]
Probab=97.32 E-value=0.13 Score=47.28 Aligned_cols=330 Identities=11% Similarity=0.064 Sum_probs=180.1
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 043161 85 TFSFGFMLGMGSALETLCGQAFGAGQVHMLGVYMQRSWLILSVTCVCLLPIYCFASPILKLLGQEEQIADLAGQFTILTI 164 (444)
Q Consensus 85 ~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~ 164 (444)
++.+.+..|+....++++|...=++|++++..-+.-...+....+..+.. ++-...++... ... ...+
T Consensus 71 ifS~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~-------~vf~~~~~~si---~yk--~l~~ 138 (467)
T COG4267 71 IFSQIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGL-------IVFFVNNQYSI---VYK--ILAC 138 (467)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH-------HhhhhcCchhH---HHH--HHHH
Confidence 34455678888888999998887777777654443333332222222221 11111222211 111 1223
Q ss_pred hhHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 043161 165 PQLFSLAINFPTQKFLQAQSKVSAFAWIGFVALVVHIVMLYVFIYVFDWGMTGAAIAYDISSWIIAIGQVIYVIGWCKET 244 (444)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~ 244 (444)
......+..=+...++.+.+|.+.....-.++.++...+..++-. .+..|..++..++..+.......++.|..+.+
T Consensus 139 ~~FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~Ilr~fk~~ 215 (467)
T COG4267 139 ALFVGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYILRYFKSS 215 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHHHHhcccc
Confidence 333444555566778889999999998888888888888766643 58999999999999998888777776543322
Q ss_pred hccCCHHhHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCchHH------HHhHHHHHHHHHHHHHHHHH-----H
Q 043161 245 WHGLSRAAFIEIWAFVRLSLASAVMLCLEIWYMMSIIILTGHLDNAIV------AVGSLSVCMNLNGWEAMLFI-----G 313 (444)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~------~v~~~~~~~~i~~~~~~~~~-----~ 313 (444)
.+ ...+-.+..++ -....+-......+-++++.+.=.-++++. +-..|.+..-...+...|.. .
T Consensus 216 ~~-i~FdFL~~~~~----y~SLllIg~FY~lgiwid~FifW~~~~~~~Iag~~~~S~lYDvpiF~ayl~~iPs~vvF~i~ 290 (467)
T COG4267 216 RR-IGFDFLLYRRK----YPSLLLIGFFYNLGIWIDNFIFWKVPTGIEIAGPFFASPLYDVPIFYAYLFIIPSMVVFLIS 290 (467)
T ss_pred cc-cceehhhhhhc----chHHHHHHHHHHhHhhhhheeeEecCCCCEeecceecchhhhHHHHHHHHHhcchhheeeee
Confidence 11 11111111211 112234445555666666544322221111 11123444333333333322 2
Q ss_pred HHHHHHHHHHHhh----cC-------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHHHHH
Q 043161 314 INAAISVRVSNEL----GL-------GHPRAAKYSVYVTVFQSLLIGVLFMVIILITKDYFAIIFTSSAELQQAVAKLAF 382 (444)
Q Consensus 314 i~~a~~~~~s~~~----~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~ 382 (444)
+.+...+.--+.+ +. ++.++.....++...-.+-+....++.++++++.+..++.-|+. ..+..+
T Consensus 291 lET~F~~~Yk~~y~~I~~g~tl~~I~~~~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~~----~l~lF~ 366 (467)
T COG4267 291 LETDFQENYKEYYQAIRGGGTLREIENNLKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSEY----YLDLFY 366 (467)
T ss_pred eeehHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHH----HHHHHH
Confidence 2333333322222 21 22333444455555555566777888899999999998876643 344556
Q ss_pred HHHHHHHHhhHHHHHHHHHHhcCcchhhHHHHHHHHHHhhHHHHHHHHHhcCCCceEE
Q 043161 383 LLGITMVLNSVQPVISGVAIGGGWQAMVAYINIGSYYIFGLPLGYLLGYTANLGVTVY 440 (444)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~~~~g~ 440 (444)
+-.++.-++......-++..=.++-|..+..+..- .+.+-.++++... .|-+-+|+
T Consensus 367 vd~lg~s~~i~f~~ll~i~lyfd~r~i~l~~t~~f-li~N~ilT~i~l~-lgp~~~g~ 422 (467)
T COG4267 367 VDVLGVSCQIVFMSLLNIFLYFDYRRIALELTALF-LISNGILTFIFLE-LGPGYYGV 422 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHH-HHHhHHHHHHHHH-hCccceeh
Confidence 66666666655555555555566666665555444 5556666666543 44444443
No 44
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=96.74 E-value=0.28 Score=43.57 Aligned_cols=123 Identities=15% Similarity=0.264 Sum_probs=78.8
Q ss_pred HHHHhcCCchHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043161 281 IILTGHLDNAIVAVGSLSVCMNLNGWEAMLF-IGINAAISVRVSNELGLGHPRAAKYSVYVTVFQSLLIGVLFMVIILIT 359 (444)
Q Consensus 281 ~~~~~~~~~~~~~v~~~~~~~~i~~~~~~~~-~~i~~a~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (444)
..+...++.++ .|.|+....+..+...+. .|+.+...- ..++|.++.++..+..........+...++
T Consensus 9 ~~lar~l~~~~--~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 77 (251)
T PF13440_consen 9 ILLARYLGPED--FGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAIL---- 77 (251)
T ss_pred HHHHHHCCHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 34555556544 569999999888888764 455444332 234666677777666665544444443333
Q ss_pred hhhhhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCcchhhHHHHHHHHH
Q 043161 360 KDYFAIIFTSSAELQQAVAKLAFLLGITMVLNSVQPVISGVAIGGGWQAMVAYINIGSYY 419 (444)
Q Consensus 360 ~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 419 (444)
...+...+ ++++ ...++.+..+..++........+.+++.+|.+...........
T Consensus 78 ~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 132 (251)
T PF13440_consen 78 AILIAYFF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSL 132 (251)
T ss_pred HHHHHHHh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 22223333 3333 2345567777888889999999999999999998888777743
No 45
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=96.11 E-value=0.0065 Score=49.22 Aligned_cols=59 Identities=12% Similarity=0.119 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhcCcchhhHHHHHHHHHHhhHHHHHHHHHhcCCCceEE
Q 043161 381 AFLLGITMVLNSVQPVISGVAIGGGWQAMVAYINIGSYYIFGLPLGYLLGYTANLGVTVY 440 (444)
Q Consensus 381 l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~~~~g~ 440 (444)
+++++++.++.++.....+++++.||+|..+..++.+ .++++++.+++.+.+|..+.++
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~-~~v~i~~~~~li~~~G~~Gaa~ 60 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIG-AIVNIILNYILIPRFGIYGAAI 60 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHH
Confidence 6788999999999999999999999999999999998 7889999999998887665543
No 46
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=71.76 E-value=25 Score=25.04 Aligned_cols=40 Identities=13% Similarity=0.046 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHH
Q 043161 311 FIGINAAISVRVSNELGLGHPRAAKYSVYVTVFQSLLIGV 350 (444)
Q Consensus 311 ~~~i~~a~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (444)
..-++......+.+.+.++|++++++..+++.+++.+-..
T Consensus 33 lGi~Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~ 72 (82)
T PF04505_consen 33 LGIVAIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAII 72 (82)
T ss_pred HHHHHheechhhHHHHHCCCHHHHHHHHHHhHHHHHHHHH
Confidence 3444445566777788899999999999999988864333
No 47
>COG4267 Predicted membrane protein [Function unknown]
Probab=47.10 E-value=2.6e+02 Score=26.61 Aligned_cols=107 Identities=16% Similarity=0.093 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHH
Q 043161 309 MLFIGINAAISVRVSNELGLGHPRAAKYSVYVTVFQSLLIGVLFMVIILITKDYFAIIFTSSAELQQAVAKLAFLLGITM 388 (444)
Q Consensus 309 ~~~~~i~~a~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~ 388 (444)
.+..+++...+-.+|...=++|.+++...+.-...+....+..++..++ +.+++ +....+.+ .+...
T Consensus 75 IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf---------~~~~~--~si~yk~l--~~~~F 141 (467)
T COG4267 75 IITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVF---------FVNNQ--YSIVYKIL--ACALF 141 (467)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhh---------hhcCc--hhHHHHHH--HHHHH
Confidence 4456667677777787777788888877777666666655555553221 12222 22233332 23344
Q ss_pred HHhhHHHHHHHHHHhcCcchhhHHHHHHHHHHhhHHHHHHH
Q 043161 389 VLNSVQPVISGVAIGGGWQAMVAYINIGSYYIFGLPLGYLL 429 (444)
Q Consensus 389 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l 429 (444)
+..+...+....+.+++|.|........+ .++.+.++.++
T Consensus 142 V~m~~~Wi~~iFlS~lK~y~~iv~sF~iG-~~~sv~La~~~ 181 (467)
T COG4267 142 VGMSLVWILMIFLSGLKKYKLIVLSFFIG-YVVSVLLARLF 181 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 45566667778888888888776665555 45555555544
No 48
>PF05313 Pox_P21: Poxvirus P21 membrane protein; InterPro: IPR007977 The p21 membrane protein of vaccinia virus, encoded by the A17L (or A18L) gene, has been reported to localise on the inner of the two membranes of the intracellular mature virus (IMV). It has also been shown that p21 acts as a membrane anchor for the externally located fusion protein P14 (A27L gene) [].; GO: 0016021 integral to membrane
Probab=41.06 E-value=1.2e+02 Score=25.09 Aligned_cols=26 Identities=38% Similarity=0.514 Sum_probs=18.7
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHh
Q 043161 214 GMTGAAIAYDISSWIIAIGQVIYVIG 239 (444)
Q Consensus 214 g~~g~~~a~~i~~~~~~~~~~~~~~~ 239 (444)
++.|-..++.+++++..++...|.+|
T Consensus 135 ~~s~s~~~~ti~yIiL~iLf~~Ya~n 160 (189)
T PF05313_consen 135 SVSGSSGAYTISYIILAILFCIYAFN 160 (189)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHheee
Confidence 34466677788888888877777764
No 49
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=24.82 E-value=3.6e+02 Score=23.46 Aligned_cols=39 Identities=8% Similarity=0.032 Sum_probs=20.3
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCC
Q 043161 110 QVHMLGVYMQRSWLILSVTCVCLLPIYCFASPILKLLGQ 148 (444)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 148 (444)
++++..+.+..++...+++..+.++++....++..+++.
T Consensus 142 ~y~k~~k~~~~gi~aml~Vf~LF~lvmt~g~d~m~fl~v 180 (230)
T PF03904_consen 142 KYQKRQKSMYKGIGAMLFVFMLFALVMTIGSDFMDFLHV 180 (230)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchhhhhH
Confidence 334444445555544444443444456666677777764
No 50
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=24.81 E-value=1.1e+02 Score=23.74 Aligned_cols=6 Identities=0% Similarity=-0.136 Sum_probs=2.2
Q ss_pred HHHHHh
Q 043161 234 VIYVIG 239 (444)
Q Consensus 234 ~~~~~~ 239 (444)
.++++|
T Consensus 85 ~y~irR 90 (122)
T PF01102_consen 85 SYCIRR 90 (122)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 51
>PF03609 EII-Sor: PTS system sorbose-specific iic component; InterPro: IPR004700 Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane
Probab=22.18 E-value=5.5e+02 Score=22.67 Aligned_cols=66 Identities=12% Similarity=0.021 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhhhcc
Q 043161 302 NLNGWEAMLFIGINAAISVRVSNELGLGHPRAAKYSVYVTVFQSLLIGVLF-MVIILITKDYFAIIF 367 (444)
Q Consensus 302 ~i~~~~~~~~~~i~~a~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~l~ 367 (444)
.+.+....+...++.....+.-+...++|.++.++................ ..+...++.+..+-+
T Consensus 104 ~lg~~l~~~~~~~n~~~~~~adk~ae~gn~~~i~~~~~~~~~~~~~~~~v~~~fl~~~~G~~~v~~~ 170 (238)
T PF03609_consen 104 ILGQQLDNLLRTINSFFVHRADKAAEEGNYKKINRIHWIGPILFFLIYFVPPVFLAVYFGSDAVQAL 170 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 444555666677788888888888889999998887666654444444443 444445555554434
No 52
>PRK10739 putative antibiotic transporter; Provisional
Probab=20.32 E-value=5.5e+02 Score=21.92 Aligned_cols=57 Identities=12% Similarity=0.124 Sum_probs=36.8
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHH
Q 043161 319 SVRVSNELGLGHPRAAKYSVYVTVFQSLLIGVLFMVIILITKDYFAIIFTSSAELQQAVAK 379 (444)
Q Consensus 319 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~ 379 (444)
.|..-...++.+.++.|+..++...... .+.+++.+.++.+.+.|+-+-+..+.+.-
T Consensus 21 ipiflslt~~~~~~~r~~ia~~a~~~a~----~ill~f~~~G~~iL~~fGIsl~afrIAGG 77 (197)
T PRK10739 21 LPIFMSVLKHLEPKRRRAIMIRELLIAL----LVMLVFLFAGEKILAFLNLRTETVSISGG 77 (197)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3444445555667777777766655444 44456778899999999876655555443
Done!