Query 043161
Match_columns 444
No_of_seqs 263 out of 1929
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 23:51:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043161.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043161hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 100.0 3.6E-47 1.2E-51 372.3 33.3 409 32-443 6-427 (460)
2 3mkt_A Multi antimicrobial ext 99.9 2.2E-21 7.7E-26 189.3 18.6 208 31-239 231-445 (460)
3 3o7q_A L-fucose-proton symport 39.3 2.2E+02 0.0075 25.8 22.4 38 40-77 28-67 (438)
4 2k1k_A Ephrin type-A receptor 20.7 95 0.0033 17.5 2.8 9 217-225 15-23 (38)
5 1qle_D Cytochrome AA3, ccytoch 7.2 4.1E+02 0.014 15.4 5.1 31 326-356 5-35 (43)
6 1m56_D Cytochrome C oxidase; m 5.9 5.5E+02 0.019 15.5 5.1 32 327-358 14-45 (51)
7 3hd7_B Syntaxin-1A; membrane p 5.6 4.8E+02 0.016 18.6 3.1 14 332-345 73-86 (109)
8 3mp7_B Preprotein translocase 5.3 5.3E+02 0.018 16.3 2.7 47 20-66 13-60 (61)
9 3hd7_A Vesicle-associated memb 5.2 5.6E+02 0.019 17.5 3.1 37 323-359 49-85 (91)
10 1pw4_A Glycerol-3-phosphate tr 4.9 1.6E+03 0.054 19.7 31.9 383 15-432 5-436 (451)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=100.00 E-value=3.6e-47 Score=372.32 Aligned_cols=409 Identities=22% Similarity=0.362 Sum_probs=374.6
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCc
Q 043161 32 VFWTETVKMWKIATPIVFNILCNYGTNSFTNIFVGHIGEIELSSVTISLSVIGTFSFGFMLGMGSALETLCGQAFGAGQV 111 (444)
Q Consensus 32 ~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~ 111 (444)
..++..|++++.++|.+++++...+.+.+|+.+++|+|++++|+++.+.++.... ..+..|++++..+.++|++|++|+
T Consensus 6 ~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~-~~~~~g~~~~~~~~is~~~g~~~~ 84 (460)
T 3mkt_A 6 RYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS-ILFGVGLLMALVPVVAQLNGAGRQ 84 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHH-HHHHHHHHHHHGGGCTTTTSSSST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCh
Confidence 3457889999999999999999999999999999999999999999999997654 567889999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCChhHHHH
Q 043161 112 HMLGVYMQRSWLILSVTCVCLLPIYCFASPILKLLGQEEQIADLAGQFTILTIPQLFSLAINFPTQKFLQAQSKVSAFAW 191 (444)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 191 (444)
++.++.++.++.+..+.+++..++..+.++++.+++.+++..+.+..|+++.+++.++..+.....+.+|+.||++.++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 164 (460)
T 3mkt_A 85 HKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMV 164 (460)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 99999999999999998888776677888888989889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHh-c---CCccchhHHHHHHHHHHHHHHHHHHHHhhhhhhh----ccCCHHhHHhHHHHHHHH
Q 043161 192 IGFVALVVHIVMLYVFIYV-F---DWGMTGAAIAYDISSWIIAIGQVIYVIGWCKETW----HGLSRAAFIEIWAFVRLS 263 (444)
Q Consensus 192 ~~~~~~~~~i~l~~~li~~-~---~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 263 (444)
.++++.++|+++++++++. + ++|+.|+++++.+++.+..++..++++|+.+... .+..+.+++..|++++.+
T Consensus 165 ~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 244 (460)
T 3mkt_A 165 IGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLG 244 (460)
T ss_dssp HHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHHh
Confidence 9999999999999999975 3 6899999999999999999988888774322111 112233457799999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 043161 264 LASAVMLCLEIWYMMSIIILTGHLDNAIVAVGSLSVCMNLNGWEAMLFIGINAAISVRVSNELGLGHPRAAKYSVYVTVF 343 (444)
Q Consensus 264 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~~~~~~~i~~a~~~~~s~~~~~~~~~~~~~~~~~~~~ 343 (444)
.|..+++....+...+++.+++.+|+ .++++|+++.++.++..++..+++++..|.+++++|++|.++.++..+++.+
T Consensus 245 ~p~~~~~~~~~~~~~~~~~~~~~~g~--~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~~ 322 (460)
T 3mkt_A 245 FPVAAALFFEVTLFAVVALLVAPLGS--TVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLM 322 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999975 4567999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCcchhhHHHHHHHHHHhhH
Q 043161 344 QSLLIGVLFMVIILITKDYFAIIFTSSAELQQAVAKLAFLLGITMVLNSVQPVISGVAIGGGWQAMVAYINIGSYYIFGL 423 (444)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i 423 (444)
+...++++.++++.++++++..+|++|+++.+.+..++++++++.++++++....+.+++.||+|.+++.++.+.|++++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i 402 (460)
T 3mkt_A 323 TGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGL 402 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988889999999999999999999999999999999999999999999889999
Q ss_pred HHHHHHHHh----cC-CCceEEecc
Q 043161 424 PLGYLLGYT----AN-LGVTVYLHT 443 (444)
Q Consensus 424 ~l~~~l~~~----~~-~~~~g~~~~ 443 (444)
|+.+++.+. ++ +|..|+|.+
T Consensus 403 ~l~~~l~~~~~~~~~~~G~~G~~~a 427 (460)
T 3mkt_A 403 PTGYILGMTNWLTEQPLGAKGFWLG 427 (460)
T ss_dssp HHHHHHHHHHTSSCCSSHHHHHHHH
T ss_pred HHHHHHHhhhhccccccCchhHHHH
Confidence 999999998 67 888888865
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.87 E-value=2.2e-21 Score=189.28 Aligned_cols=208 Identities=13% Similarity=0.165 Sum_probs=191.9
Q ss_pred hhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCC
Q 043161 31 SVFWTETVKMWKIATPIVFNILCNYGTNSFTNIFVGHIGEIELSSVTISLSVIGTFSFGFMLGMGSALETLCGQAFGAGQ 110 (444)
Q Consensus 31 ~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~ 110 (444)
+.+++..|++++.+.|..++++...+...+|+.+++++|++++|+|+++.++.++. ..+..+++++..|.+++++|++|
T Consensus 231 ~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~-~~~~~~~~~a~~p~i~~~~g~~~ 309 (460)
T 3mkt_A 231 KPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLV-FMFPMSIGAAVSIRVGHKLGEQD 309 (460)
T ss_dssp SSTTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHSSC
T ss_pred ccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCC
Confidence 44557789999999999999999999999999999999999999999999999866 56889999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCChhHH
Q 043161 111 VHMLGVYMQRSWLILSVTCVCLLPI-YCFASPILKLLGQEEQIADLAGQFTILTIPQLFSLAINFPTQKFLQAQSKVSAF 189 (444)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 189 (444)
+|+.++..+.+.......+++.+++ ..+++++..++..|++..+.+.+++++.++..++.+++.+..+.+++.||++.+
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 389 (460)
T 3mkt_A 310 TKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAI 389 (460)
T ss_dssp CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHH
Confidence 9999999999999999999998865 888999999998888888899999999999999999999999999999999999
Q ss_pred HHHHHHHH-HHHHHHHHHHHHh----cC-CccchhHHHHHHHHHHHHHHHHHHHHh
Q 043161 190 AWIGFVAL-VVHIVMLYVFIYV----FD-WGMTGAAIAYDISSWIIAIGQVIYVIG 239 (444)
Q Consensus 190 ~~~~~~~~-~~~i~l~~~li~~----~~-~g~~g~~~a~~i~~~~~~~~~~~~~~~ 239 (444)
++.++++. ++++++++++.+. ++ +|+.|+++++.+++.+..++..+.++|
T Consensus 390 ~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~ 445 (460)
T 3mkt_A 390 FHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYW 445 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998 9999999999986 56 899999999999999998877666654
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=39.30 E-value=2.2e+02 Score=25.76 Aligned_cols=38 Identities=5% Similarity=0.034 Sum_probs=18.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhhc--ChhHHHHHH
Q 043161 40 MWKIATPIVFNILCNYGTNSFTNIFVGHI--GEIELSSVT 77 (444)
Q Consensus 40 i~~~~~p~~~~~~~~~~~~~~~~~~i~~~--g~~~~~~~~ 77 (444)
+.-...-.+...............+..++ ++.+.+...
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~ 67 (438)
T 3o7q_A 28 FALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQ 67 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHH
Confidence 33334444444444445555555555556 444444443
No 4
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=20.66 E-value=95 Score=17.54 Aligned_cols=9 Identities=0% Similarity=0.021 Sum_probs=3.5
Q ss_pred hhHHHHHHH
Q 043161 217 GAAIAYDIS 225 (444)
Q Consensus 217 g~~~a~~i~ 225 (444)
|+.++.+.+
T Consensus 15 GiVvG~v~g 23 (38)
T 2k1k_A 15 AVIFGLLLG 23 (38)
T ss_dssp HHHHHHHHH
T ss_pred eeehHHHHH
Confidence 333443333
No 5
>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.23.8.1
Probab=7.19 E-value=4.1e+02 Score=15.41 Aligned_cols=31 Identities=10% Similarity=0.081 Sum_probs=17.2
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043161 326 LGLGHPRAAKYSVYVTVFQSLLIGVLFMVII 356 (444)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (444)
.|+.|+.+-++.+.--++++-..++.+.+++
T Consensus 5 hG~MD~~~hE~Ty~gFi~~~k~gt~~~~~~l 35 (43)
T 1qle_D 5 HGEMDIRHQQATFAGFIKGATWVSILSIAVL 35 (43)
T ss_dssp TTCSCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777766666655555544444433333
No 6
>1m56_D Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.23.8.1 PDB: 1m57_D*
Probab=5.85 E-value=5.5e+02 Score=15.53 Aligned_cols=32 Identities=9% Similarity=0.011 Sum_probs=19.1
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043161 327 GLGHPRAAKYSVYVTVFQSLLIGVLFMVIILI 358 (444)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (444)
|+.|+.+-++.+.--++++-..++.+.+++.+
T Consensus 14 g~MD~~~he~Ty~gFi~~~k~gt~~~~~~ll~ 45 (51)
T 1m56_D 14 GSMDITQQEKTFAGFVRMVTWAAVVIVAALIF 45 (51)
T ss_dssp TCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788877777766666555444444444433
No 7
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=5.59 E-value=4.8e+02 Score=18.59 Aligned_cols=14 Identities=7% Similarity=-0.213 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 043161 332 RAAKYSVYVTVFQS 345 (444)
Q Consensus 332 ~~~~~~~~~~~~~~ 345 (444)
+++.++-+++.+..
T Consensus 73 ~kA~~yqk~~rkk~ 86 (109)
T 3hd7_B 73 KKAVKYQSKARRKK 86 (109)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCcc
Confidence 33444444444333
No 8
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=5.34 E-value=5.3e+02 Score=16.25 Aligned_cols=47 Identities=19% Similarity=0.182 Sum_probs=0.0
Q ss_pred cccccchhhhhhhhHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHh
Q 043161 20 YEPVKNFKEAKSVFWTETVKMWKI-ATPIVFNILCNYGTNSFTNIFVG 66 (444)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~i~~~-~~p~~~~~~~~~~~~~~~~~~i~ 66 (444)
.+..+..+.-.++++++++++.+. ++-..+..++..+..++...+-|
T Consensus 13 kd~~rvlk~~~KPd~~Ef~~iak~~~iG~~i~G~iGf~Ikli~~~l~g 60 (61)
T 3mp7_B 13 KESRRAFLVTKKPNWATYKRAAKITGLGIILIGLIGMLIRIVGILILG 60 (61)
T ss_dssp HHHTHHHHHSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 9
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=5.23 E-value=5.6e+02 Score=17.52 Aligned_cols=37 Identities=11% Similarity=0.321 Sum_probs=0.0
Q ss_pred HHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043161 323 SNELGLGHPRAAKYSVYVTVFQSLLIGVLFMVIILIT 359 (444)
Q Consensus 323 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (444)
|+.+.++..+--++..++-+++.+++++++.+++++.
T Consensus 49 s~~F~~~A~~l~rkmwwkn~K~~iii~~iv~~il~ii 85 (91)
T 3hd7_A 49 ASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIII 85 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 10
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=4.88 E-value=1.6e+03 Score=19.72 Aligned_cols=383 Identities=9% Similarity=-0.083 Sum_probs=0.0
Q ss_pred CCccccccccchhhhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhc-ChhHHHHHHHHHHHHHHHHHHHHHH
Q 043161 15 PTAADYEPVKNFKEAKSVFWTETVKMWKIATPIVFNILCNYGTNSFTNIFVGHI-GEIELSSVTISLSVIGTFSFGFMLG 93 (444)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~~-g~~~~~~~~~~~~~~~~~~~~~~~g 93 (444)
++.+++++....+...+..+..++.+.....-.+...............+..++ ++.+.+.......+...+...+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~-- 82 (451)
T 1pw4_A 5 KPAPHKARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIM-- 82 (451)
T ss_dssp CCCCCCCCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSSTTCSSCHHHHHHHHHHHHHHHHHHH--
T ss_pred CCCCCcccCchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhHHHHHHHHHHHHHHHHHHhH--
Q ss_pred HHHhHHHHHHhhhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHcCCCHHHHHHHHHHHHHHHhhHHH
Q 043161 94 MGSALETLCGQAFGAGQVHMLGVYMQRSWLILSVTCVCLLPIYCF----ASPILKLLGQEEQIADLAGQFTILTIPQLFS 169 (444)
Q Consensus 94 l~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 169 (444)
..+++.+|++ ..+..+.+...+..++..+ .+.+..++ ....+.-...+...
T Consensus 83 ------G~l~dr~g~r----------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~---------~~~~l~G~~~~~~~ 137 (451)
T 1pw4_A 83 ------GSVSDRSNPR----------VFLPAGLILAAAVMLFMGFVPWATSSIAVMF---------VLLFLCGWFQGMGW 137 (451)
T ss_dssp ------HHHHHHSCHH----------HHHHHHHHHHHHHHHHHHHCHHHHSSSSHHH---------HHHHHHHHHHHHTH
T ss_pred ------HHHHHhcCch----------HHHHHHHHHHHHHHHHHHhhhhccccHHHHH---------HHHHHHHHHhhhcc
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHH-hcCCc-cchhHHHHHHHHHHHHHHHHHHHHhhhhhh---
Q 043161 170 LAINFPTQKFLQAQSKVSAFAWIGFVALVVHIVMLYVFIY-VFDWG-MTGAAIAYDISSWIIAIGQVIYVIGWCKET--- 244 (444)
Q Consensus 170 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~-~~~~g-~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~--- 244 (444)
.............+++.+.....+....+-.++...+.-. ....| .....+...+...+..++.....++..+..
T Consensus 138 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (451)
T 1pw4_A 138 PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLP 217 (451)
T ss_dssp HHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCC
T ss_pred chHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCC
Q ss_pred -------------------hccCCHHhHHhH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHhc-CCchHHHHhHHHHHH
Q 043161 245 -------------------WHGLSRAAFIEI---WAFVRLSLASAVMLCLEIWYMMSIIILTGH-LDNAIVAVGSLSVCM 301 (444)
Q Consensus 245 -------------------~~~~~~~~~~~~---~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~ 301 (444)
....+....+.. +.+....+...+..............+... ++.++.. .
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-------~ 290 (451)
T 1pw4_A 218 PIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDK-------S 290 (451)
T ss_dssp SCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHH-------H
T ss_pred ChhhhcccccccchhhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-------H
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh--cCCChHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHhhhhhhhc
Q 043161 302 NLNGWEAMLFIGINAAISVRVSNEL--GLGHPRAAKYSVYV-------------TVFQSLLIGVLFMVIILITKDYFAII 366 (444)
Q Consensus 302 ~i~~~~~~~~~~i~~a~~~~~s~~~--~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~i~~l 366 (444)
........+...++......+++.+ +++..-..-...-. .........+................
T Consensus 291 ~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 370 (451)
T 1pw4_A 291 SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLH 370 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHH
Q ss_pred cCCcHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHhcCcchhhHHHHHHHHHHhhHHHHHHHHHh
Q 043161 367 FTSSAELQQAVAKLAFLLGITMV-LNSVQPVISGVAIGGGWQAMVAYINIGSYYIFGLPLGYLLGYT 432 (444)
Q Consensus 367 ~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~ 432 (444)
..+.-+....+...=........ ...+.....+.+...-.....+...... .++...+.+.+.+.
T Consensus 371 ~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~ 436 (451)
T 1pw4_A 371 ALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGG-SILAVILLIVVMIG 436 (451)
T ss_dssp HHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH-HHHHHHHHHHHHhh
Done!