Query 043161
Match_columns 444
No_of_seqs 263 out of 1929
Neff 10.5
Searched_HMMs 13730
Date Mon Mar 25 23:51:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043161.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/043161hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 32.6 1.3E+02 0.0094 25.0 21.5 27 212-238 406-432 (447)
2 d1pv7a_ f.38.1.2 (A:) Lactose 29.8 1.3E+02 0.0096 24.2 17.4 6 214-219 377-382 (417)
3 d1nkzb_ f.3.1.1 (B:) Light-har 7.5 1.8E+02 0.013 15.2 4.5 34 330-363 7-40 (41)
4 d3dhwa1 f.58.1.1 (A:6-208) D-m 6.4 3E+02 0.022 19.9 4.8 38 34-71 127-165 (203)
5 d1m56d_ f.23.8.1 (D:) Bacteria 5.7 2.4E+02 0.017 14.9 5.2 33 326-358 4-36 (42)
6 d1qled_ f.23.8.1 (D:) Bacteria 4.7 2.9E+02 0.021 14.7 5.2 33 326-358 5-37 (43)
7 d2yvxa3 f.57.1.1 (A:276-448) M 3.4 7.5E+02 0.054 17.5 7.0 35 100-134 61-97 (173)
8 d1ijdb_ f.3.1.1 (B:) Light-har 3.2 3.8E+02 0.028 13.8 4.3 31 330-360 8-38 (40)
9 d1rh5b_ f.23.28.1 (B:) Preprot 2.4 6E+02 0.043 14.3 2.7 14 30-43 16-29 (56)
10 d1su0b_ d.224.1.2 (B:) IscU ho 2.3 8.7E+02 0.063 16.0 5.0 30 313-342 61-90 (136)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=32.59 E-value=1.3e+02 Score=24.95 Aligned_cols=27 Identities=19% Similarity=0.190 Sum_probs=13.0
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHHHH
Q 043161 212 DWGMTGAAIAYDISSWIIAIGQVIYVI 238 (444)
Q Consensus 212 ~~g~~g~~~a~~i~~~~~~~~~~~~~~ 238 (444)
..|..+..+.......+..++......
T Consensus 406 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ 432 (447)
T d1pw4a_ 406 FFGWDGGFMVMIGGSILAVILLIVVMI 432 (447)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346555555444444444444444433
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=29.85 E-value=1.3e+02 Score=24.20 Aligned_cols=6 Identities=50% Similarity=0.833 Sum_probs=2.5
Q ss_pred ccchhH
Q 043161 214 GMTGAA 219 (444)
Q Consensus 214 g~~g~~ 219 (444)
|.....
T Consensus 377 g~~~~~ 382 (417)
T d1pv7a_ 377 GFQGAY 382 (417)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 444433
No 3
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=7.52 E-value=1.8e+02 Score=15.20 Aligned_cols=34 Identities=6% Similarity=0.001 Sum_probs=25.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 043161 330 HPRAAKYSVYVTVFQSLLIGVLFMVIILITKDYF 363 (444)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 363 (444)
+.+++.+.+..+.++...+.++.=++.+...+|+
T Consensus 7 eaEElHk~vIdGtRvF~~iA~~AH~La~~~tPWL 40 (41)
T d1nkzb_ 7 QSEELHKYVIDGTRVFLGLALVAHFLAFSATPWL 40 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTT
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhCccc
Confidence 4577888888888888888887777766666654
No 4
>d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease protein MetI {Escherichia coli [TaxId: 562]}
Probab=6.44 E-value=3e+02 Score=19.87 Aligned_cols=38 Identities=13% Similarity=-0.105 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhc-Chh
Q 043161 34 WTETVKMWKIATPIVFNILCNYGTNSFTNIFVGHI-GEI 71 (444)
Q Consensus 34 ~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~~-g~~ 71 (444)
+..+|-++..+.|..+..........+....+..+ |..
T Consensus 127 q~~~~vilP~~~p~i~~~~~~~~~~~i~~~~~~~~ig~~ 165 (203)
T d3dhwa1 127 QIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAG 165 (203)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCCSTTCC
T ss_pred hhhHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566677777777777776666666666554 443
No 5
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=5.72 E-value=2.4e+02 Score=14.92 Aligned_cols=33 Identities=9% Similarity=-0.002 Sum_probs=19.0
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043161 326 LGLGHPRAAKYSVYVTVFQSLLIGVLFMVIILI 358 (444)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (444)
.|+-|.+.-.+.+.--+++..-.++.+.+++++
T Consensus 4 HG~MDi~vQEKTF~gFik~~t~~~i~~i~~lif 36 (42)
T d1m56d_ 4 AGSMDITQQEKTFAGFVRMVTWAAVVIVAALIF 36 (42)
T ss_dssp TTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677766666666666665554444444433
No 6
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=4.69 E-value=2.9e+02 Score=14.67 Aligned_cols=33 Identities=9% Similarity=0.104 Sum_probs=18.3
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043161 326 LGLGHPRAAKYSVYVTVFQSLLIGVLFMVIILI 358 (444)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (444)
.|+-|.+.-.+.+.--+++..-.++.+.+++++
T Consensus 5 HG~MDi~vQEkTF~gFi~~~t~~~i~~i~~lif 37 (43)
T d1qled_ 5 HGEMDIRHQQATFAGFIKGATWVSILSIAVLVF 37 (43)
T ss_dssp TTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666655544444444333
No 7
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=3.36 E-value=7.5e+02 Score=17.46 Aligned_cols=35 Identities=11% Similarity=-0.051 Sum_probs=20.5
Q ss_pred HHHHhhhcCC--CccchHHHHHHHHHHHHHHHHHHHH
Q 043161 100 TLCGQAFGAG--QVHMLGVYMQRSWLILSVTCVCLLP 134 (444)
Q Consensus 100 ~~is~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (444)
..+-|..+.+ ++++.++.+.+=...+++.+..+.+
T Consensus 61 ti~iR~La~g~i~~~~~~~~l~kE~~vgll~G~~l~~ 97 (173)
T d2yvxa3 61 TLIIRALATRDLDLRDWRRVFLKEMGVGLLLGLTLSF 97 (173)
T ss_dssp HHHHHHHHTTCSCSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444544444 5556677777766666666665553
No 8
>d1ijdb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=3.23 E-value=3.8e+02 Score=13.77 Aligned_cols=31 Identities=10% Similarity=0.025 Sum_probs=21.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043161 330 HPRAAKYSVYVTVFQSLLIGVLFMVIILITK 360 (444)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (444)
+.+++.+.+..+.++...+.++.=++.+...
T Consensus 8 eaEElHk~vIdGtRvF~~iA~~AH~La~~~t 38 (40)
T d1ijdb_ 8 QAEELHKHVIDGTRVFLVIAAIAHFLAFTLT 38 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHhcC
Confidence 4567778888888887777776655554443
No 9
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=2.40 E-value=6e+02 Score=14.28 Aligned_cols=14 Identities=21% Similarity=0.079 Sum_probs=6.9
Q ss_pred hhhhHHHHHHHHHH
Q 043161 30 KSVFWTETVKMWKI 43 (444)
Q Consensus 30 ~~~~~~~~~~i~~~ 43 (444)
+++++++++++.+.
T Consensus 16 ~KP~~~Ef~~ia~v 29 (56)
T d1rh5b_ 16 KKPTKDEYLAVAKV 29 (56)
T ss_dssp ECCCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHH
Confidence 34455555555443
No 10
>d1su0b_ d.224.1.2 (B:) IscU homolog SPy0289 {Streptococcus pyogenes [TaxId: 1314]}
Probab=2.30 E-value=8.7e+02 Score=15.96 Aligned_cols=30 Identities=13% Similarity=-0.059 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 043161 313 GINAAISVRVSNELGLGHPRAAKYSVYVTV 342 (444)
Q Consensus 313 ~i~~a~~~~~s~~~~~~~~~~~~~~~~~~~ 342 (444)
++++|....+++...-++.+++.+......
T Consensus 61 ai~~ASasil~e~i~gk~~~e~~~l~~~~~ 90 (136)
T d1su0b_ 61 TISTASSSMMTDAVIGKSKEEALALADIFS 90 (136)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 567888888888888788888877765544
Done!