Query 043163
Match_columns 172
No_of_seqs 154 out of 1920
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 23:52:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043163.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043163hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.8 1.9E-19 6.5E-24 120.7 7.9 80 47-127 8-89 (91)
2 1x4j_A Ring finger protein 38; 99.7 2.2E-18 7.4E-23 111.3 3.6 66 61-127 6-72 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.7 5.9E-18 2E-22 102.7 3.7 52 75-126 3-54 (55)
4 2ect_A Ring finger protein 126 99.7 4E-17 1.4E-21 105.9 5.9 55 74-129 12-66 (78)
5 2kiz_A E3 ubiquitin-protein li 99.7 3.6E-17 1.2E-21 103.8 5.1 53 74-127 11-63 (69)
6 2ecl_A Ring-box protein 2; RNF 99.7 2.8E-17 9.4E-22 107.8 4.0 54 76-129 14-78 (81)
7 2ep4_A Ring finger protein 24; 99.7 5.7E-17 1.9E-21 104.2 5.0 52 75-127 13-64 (74)
8 1v87_A Deltex protein 2; ring- 99.6 1.3E-15 4.4E-20 105.7 7.2 51 76-127 24-94 (114)
9 2ecm_A Ring finger and CHY zin 99.6 3.5E-16 1.2E-20 94.7 3.7 50 76-126 4-54 (55)
10 3ng2_A RNF4, snurf, ring finge 99.6 3.9E-16 1.3E-20 99.3 3.0 56 75-131 8-67 (71)
11 3dpl_R Ring-box protein 1; ubi 99.6 1.2E-15 4.1E-20 104.8 4.7 52 76-128 36-102 (106)
12 2xeu_A Ring finger protein 4; 99.6 6.3E-16 2.1E-20 96.2 2.2 55 76-131 2-60 (64)
13 2ea6_A Ring finger protein 4; 99.6 1.4E-15 4.7E-20 96.0 3.6 52 74-126 12-67 (69)
14 2d8s_A Cellular modulator of i 99.5 3.5E-15 1.2E-19 97.5 4.1 54 75-130 13-73 (80)
15 2d8t_A Dactylidin, ring finger 99.5 3.6E-15 1.2E-19 95.0 3.7 54 75-132 13-66 (71)
16 2djb_A Polycomb group ring fin 99.5 7.9E-15 2.7E-19 93.7 4.5 53 74-129 12-64 (72)
17 2ecn_A Ring finger protein 141 99.5 6.1E-15 2.1E-19 93.6 3.4 49 75-128 13-61 (70)
18 2ct2_A Tripartite motif protei 99.5 1.3E-14 4.5E-19 95.8 5.0 54 74-128 12-69 (88)
19 1chc_A Equine herpes virus-1 r 99.5 6.7E-15 2.3E-19 92.8 3.0 49 76-127 4-52 (68)
20 4a0k_B E3 ubiquitin-protein li 99.5 2.1E-15 7.3E-20 105.2 0.2 52 76-128 47-113 (117)
21 2ysl_A Tripartite motif-contai 99.5 4.5E-14 1.5E-18 90.1 4.9 52 74-129 17-71 (73)
22 2ecy_A TNF receptor-associated 99.5 3.7E-14 1.3E-18 89.0 4.0 50 75-128 13-63 (66)
23 2csy_A Zinc finger protein 183 99.5 4.8E-14 1.6E-18 92.0 4.5 49 74-126 12-60 (81)
24 2yur_A Retinoblastoma-binding 99.4 6.8E-14 2.3E-18 89.8 4.6 52 74-128 12-65 (74)
25 4ayc_A E3 ubiquitin-protein li 99.4 5.5E-14 1.9E-18 100.8 3.6 48 76-127 52-99 (138)
26 3lrq_A E3 ubiquitin-protein li 99.4 5.3E-14 1.8E-18 95.6 3.3 55 75-132 20-75 (100)
27 2ct0_A Non-SMC element 1 homol 99.4 1.8E-13 6.3E-18 87.8 4.6 50 75-127 13-64 (74)
28 1t1h_A Gspef-atpub14, armadill 99.4 1.7E-13 5.9E-18 88.6 4.5 51 74-128 5-56 (78)
29 4ap4_A E3 ubiquitin ligase RNF 99.4 8.3E-14 2.9E-18 98.3 3.0 57 75-132 5-65 (133)
30 2ecw_A Tripartite motif-contai 99.4 2E-13 6.7E-18 89.3 4.0 52 75-130 17-74 (85)
31 2egp_A Tripartite motif-contai 99.4 5.8E-14 2E-18 90.9 1.3 53 74-130 9-68 (79)
32 2y43_A E3 ubiquitin-protein li 99.4 2.3E-13 7.9E-18 92.0 4.3 51 75-128 20-70 (99)
33 1g25_A CDK-activating kinase a 99.4 2.2E-13 7.4E-18 85.2 3.7 54 77-131 3-59 (65)
34 2ecv_A Tripartite motif-contai 99.4 3.4E-13 1.2E-17 88.1 4.3 52 75-130 17-74 (85)
35 2ysj_A Tripartite motif-contai 99.4 5.1E-13 1.8E-17 82.9 4.4 44 74-121 17-63 (63)
36 2ckl_A Polycomb group ring fin 99.4 5.9E-13 2E-17 91.4 4.6 51 74-127 12-62 (108)
37 4ap4_A E3 ubiquitin ligase RNF 99.3 3.1E-13 1.1E-17 95.4 2.8 57 75-132 70-130 (133)
38 2ecj_A Tripartite motif-contai 99.3 9E-13 3.1E-17 80.2 3.7 44 74-121 12-58 (58)
39 2ckl_B Ubiquitin ligase protei 99.3 1.9E-12 6.6E-17 95.2 5.9 50 75-127 52-102 (165)
40 3fl2_A E3 ubiquitin-protein li 99.3 1.4E-12 4.7E-17 91.7 4.3 49 75-127 50-99 (124)
41 3ztg_A E3 ubiquitin-protein li 99.3 1.5E-12 5.2E-17 86.7 3.7 50 74-126 10-61 (92)
42 1jm7_A BRCA1, breast cancer ty 99.3 1.6E-12 5.5E-17 89.5 3.2 50 76-129 20-72 (112)
43 3hct_A TNF receptor-associated 99.3 2.8E-12 9.4E-17 89.5 3.6 52 74-129 15-67 (118)
44 1rmd_A RAG1; V(D)J recombinati 99.2 3.7E-12 1.3E-16 88.4 3.9 51 76-130 22-73 (116)
45 1z6u_A NP95-like ring finger p 99.2 6E-12 2E-16 91.4 4.0 49 76-128 77-126 (150)
46 3l11_A E3 ubiquitin-protein li 99.2 1.7E-12 5.6E-17 90.1 0.6 49 75-127 13-62 (115)
47 2vje_A E3 ubiquitin-protein li 99.2 5.8E-12 2E-16 78.6 2.6 50 75-127 6-57 (64)
48 2kr4_A Ubiquitin conjugation f 99.2 1.5E-11 5.1E-16 81.0 4.4 52 74-129 11-62 (85)
49 1e4u_A Transcriptional repress 99.2 1.8E-11 6.1E-16 79.4 4.5 55 74-129 8-64 (78)
50 2kre_A Ubiquitin conjugation f 99.2 1.9E-11 6.5E-16 82.9 4.2 52 74-129 26-77 (100)
51 2y1n_A E3 ubiquitin-protein li 99.2 2.2E-11 7.6E-16 100.4 5.1 51 76-130 331-382 (389)
52 1wgm_A Ubiquitin conjugation f 99.2 2.9E-11 9.8E-16 81.8 4.7 51 75-129 20-71 (98)
53 2vje_B MDM4 protein; proto-onc 99.2 1.3E-11 4.5E-16 76.7 2.7 50 75-127 5-56 (63)
54 3knv_A TNF receptor-associated 99.1 1.7E-11 5.9E-16 88.1 3.1 49 74-126 28-77 (141)
55 1bor_A Transcription factor PM 99.1 9.9E-12 3.4E-16 75.5 1.3 46 75-127 4-49 (56)
56 1jm7_B BARD1, BRCA1-associated 99.1 1.7E-11 5.8E-16 85.3 1.4 47 75-127 20-67 (117)
57 4ic3_A E3 ubiquitin-protein li 99.1 2.6E-11 9E-16 77.7 1.7 44 76-127 23-67 (74)
58 3k1l_B Fancl; UBC, ring, RWD, 99.0 4E-11 1.4E-15 96.9 1.5 53 75-127 306-373 (381)
59 3hcs_A TNF receptor-associated 99.0 1.7E-10 5.8E-15 85.1 3.7 51 74-128 15-66 (170)
60 2yu4_A E3 SUMO-protein ligase 99.0 3.4E-10 1.2E-14 75.8 3.8 50 75-127 5-63 (94)
61 2c2l_A CHIP, carboxy terminus 98.9 4.8E-10 1.6E-14 88.1 4.2 52 74-129 205-257 (281)
62 1wim_A KIAA0161 protein; ring 98.9 4E-10 1.4E-14 75.3 2.5 52 76-128 4-67 (94)
63 1vyx_A ORF K3, K3RING; zinc-bi 98.9 6.6E-10 2.3E-14 68.3 3.0 48 75-126 4-58 (60)
64 2ecg_A Baculoviral IAP repeat- 98.9 5.2E-10 1.8E-14 71.7 2.5 43 77-127 25-68 (75)
65 2ea5_A Cell growth regulator w 98.9 9.7E-10 3.3E-14 69.3 3.2 45 75-127 13-58 (68)
66 2f42_A STIP1 homology and U-bo 98.8 2.1E-09 7.1E-14 80.0 4.5 54 73-130 102-156 (179)
67 2yho_A E3 ubiquitin-protein li 98.8 7.9E-10 2.7E-14 71.7 1.2 45 76-128 17-62 (79)
68 3htk_C E3 SUMO-protein ligase 98.7 7.3E-09 2.5E-13 81.0 4.2 52 75-129 179-234 (267)
69 2bay_A PRE-mRNA splicing facto 98.7 8.1E-09 2.8E-13 63.6 2.2 52 78-132 4-55 (61)
70 3t6p_A Baculoviral IAP repeat- 98.6 6.1E-09 2.1E-13 85.0 1.5 45 75-127 293-338 (345)
71 3vk6_A E3 ubiquitin-protein li 98.5 8.9E-08 3.1E-12 63.9 3.4 51 79-132 3-54 (101)
72 3nw0_A Non-structural maintena 98.3 6.3E-07 2.1E-11 69.5 4.9 50 76-128 179-230 (238)
73 2ko5_A Ring finger protein Z; 96.5 0.0065 2.2E-07 39.8 5.5 48 75-127 26-73 (99)
74 2lri_C Autoimmune regulator; Z 96.0 0.004 1.4E-07 38.4 2.5 45 76-124 11-59 (66)
75 2jun_A Midline-1; B-BOX, TRIM, 95.7 0.0067 2.3E-07 40.1 3.0 34 77-111 3-36 (101)
76 1we9_A PHD finger family prote 94.6 0.01 3.4E-07 36.1 1.1 50 75-124 4-58 (64)
77 1wil_A KIAA1045 protein; ring 94.6 0.034 1.2E-06 35.7 3.5 36 74-111 12-47 (89)
78 2l5u_A Chromodomain-helicase-D 94.6 0.028 9.4E-07 33.9 3.0 45 75-123 9-57 (61)
79 2k16_A Transcription initiatio 94.3 0.023 7.8E-07 35.6 2.3 52 75-127 16-71 (75)
80 1mm2_A MI2-beta; PHD, zinc fin 94.1 0.011 3.9E-07 35.7 0.5 48 75-126 7-58 (61)
81 2yt5_A Metal-response element- 93.6 0.026 8.8E-07 34.4 1.4 51 75-125 4-62 (66)
82 2yql_A PHD finger protein 21A; 93.3 0.014 4.8E-07 34.6 -0.2 46 74-123 6-55 (56)
83 3lqh_A Histone-lysine N-methyl 92.8 0.039 1.3E-06 40.8 1.6 48 78-125 3-64 (183)
84 3u5n_A E3 ubiquitin-protein li 92.4 0.034 1.1E-06 41.7 0.9 47 75-125 5-55 (207)
85 1wev_A Riken cDNA 1110020M19; 92.2 0.048 1.6E-06 35.4 1.3 50 77-126 16-74 (88)
86 2puy_A PHD finger protein 21A; 92.0 0.023 7.7E-07 34.1 -0.4 47 76-126 4-54 (60)
87 2l43_A N-teminal domain from h 91.9 0.065 2.2E-06 34.7 1.7 55 75-129 23-80 (88)
88 3ql9_A Transcriptional regulat 91.8 0.29 1E-05 34.0 5.0 52 71-126 51-113 (129)
89 1wep_A PHF8; structural genomi 91.7 0.27 9.1E-06 31.0 4.4 50 77-127 12-66 (79)
90 1f62_A Transcription factor WS 91.6 0.084 2.9E-06 30.3 1.8 44 79-123 2-49 (51)
91 3o36_A Transcription intermedi 91.5 0.12 4.1E-06 37.9 2.9 46 76-125 3-52 (184)
92 2lbm_A Transcriptional regulat 91.4 0.27 9.4E-06 34.7 4.5 48 73-124 59-117 (142)
93 2ku3_A Bromodomain-containing 91.1 0.1 3.5E-06 32.4 1.9 50 75-124 14-66 (71)
94 3v43_A Histone acetyltransfera 91.0 0.36 1.2E-05 32.4 4.8 46 77-122 5-62 (112)
95 3v43_A Histone acetyltransfera 91.0 0.059 2E-06 36.4 0.7 45 79-123 63-111 (112)
96 1xwh_A Autoimmune regulator; P 90.2 0.064 2.2E-06 32.7 0.4 46 75-124 6-55 (66)
97 2ysm_A Myeloid/lymphoid or mix 90.2 0.076 2.6E-06 35.7 0.8 47 75-122 5-55 (111)
98 2vpb_A Hpygo1, pygopus homolog 90.1 0.27 9.1E-06 29.9 3.1 34 76-109 7-41 (65)
99 2e6r_A Jumonji/ARID domain-con 90.1 0.13 4.5E-06 33.5 1.8 50 75-125 14-67 (92)
100 2ks1_B Epidermal growth factor 90.0 0.52 1.8E-05 26.4 4.0 12 6-17 13-24 (44)
101 2l2t_A Receptor tyrosine-prote 89.6 0.86 2.9E-05 25.5 4.7 13 6-18 12-24 (44)
102 2ri7_A Nucleosome-remodeling f 88.6 0.26 8.7E-06 35.6 2.6 48 76-124 7-59 (174)
103 2kgg_A Histone demethylase jar 88.4 0.15 5.1E-06 29.5 1.0 44 79-122 4-52 (52)
104 2l8s_A Integrin alpha-1; trans 88.4 0.7 2.4E-05 27.0 3.9 30 4-33 10-40 (54)
105 2kwj_A Zinc finger protein DPF 87.9 0.36 1.2E-05 32.6 2.8 45 78-122 2-59 (114)
106 1fp0_A KAP-1 corepressor; PHD 87.7 0.2 6.7E-06 32.5 1.3 47 74-124 22-72 (88)
107 1wee_A PHD finger family prote 87.7 0.11 3.8E-06 32.2 0.1 49 75-124 14-66 (72)
108 2knc_A Integrin alpha-IIB; tra 87.5 1.2 4.2E-05 26.0 4.6 29 4-32 13-42 (54)
109 3m62_A Ubiquitin conjugation f 87.3 0.71 2.4E-05 42.1 5.1 53 74-130 888-941 (968)
110 2ro1_A Transcription intermedi 85.2 0.18 6.2E-06 37.2 0.2 44 77-124 2-49 (189)
111 2e6s_A E3 ubiquitin-protein li 84.1 0.16 5.5E-06 32.0 -0.4 44 79-123 28-76 (77)
112 2xb1_A Pygopus homolog 2, B-ce 83.6 0.62 2.1E-05 31.0 2.3 47 78-124 4-61 (105)
113 3asl_A E3 ubiquitin-protein li 83.1 0.17 5.9E-06 31.2 -0.6 44 79-123 20-68 (70)
114 4gne_A Histone-lysine N-methyl 82.7 1.3 4.3E-05 29.7 3.5 45 74-124 12-62 (107)
115 2lv9_A Histone-lysine N-methyl 82.5 0.47 1.6E-05 31.2 1.3 44 78-123 29-75 (98)
116 1wfk_A Zinc finger, FYVE domai 80.1 1.6 5.4E-05 28.0 3.2 52 76-127 8-66 (88)
117 3shb_A E3 ubiquitin-protein li 79.2 0.3 1E-05 30.7 -0.5 44 79-123 28-76 (77)
118 1z2q_A LM5-1; membrane protein 78.6 1.6 5.5E-05 27.6 2.8 51 76-126 20-78 (84)
119 1joc_A EEA1, early endosomal a 78.5 1.4 4.8E-05 30.2 2.7 35 77-111 69-103 (125)
120 1vfy_A Phosphatidylinositol-3- 78.2 1.7 5.8E-05 26.7 2.8 33 78-110 12-44 (73)
121 1wem_A Death associated transc 77.9 0.99 3.4E-05 28.0 1.6 45 78-124 17-70 (76)
122 2yw8_A RUN and FYVE domain-con 77.7 1.7 5.7E-05 27.4 2.7 35 77-111 19-53 (82)
123 3t7l_A Zinc finger FYVE domain 77.4 1.7 5.7E-05 28.0 2.7 50 77-126 20-75 (90)
124 1y02_A CARP2, FYVE-ring finger 76.7 0.4 1.4E-05 32.8 -0.5 47 78-124 20-66 (120)
125 3o70_A PHD finger protein 13; 76.3 0.8 2.7E-05 28.0 0.8 47 75-123 17-66 (68)
126 2ysm_A Myeloid/lymphoid or mix 75.8 0.55 1.9E-05 31.3 -0.0 45 79-124 56-104 (111)
127 1wen_A Inhibitor of growth fam 75.6 2.1 7.2E-05 26.3 2.7 44 76-124 15-65 (71)
128 1x4u_A Zinc finger, FYVE domai 75.2 2 6.8E-05 27.2 2.5 34 77-110 14-47 (84)
129 2k1a_A Integrin alpha-IIB; sin 74.9 1.5 5.2E-05 24.2 1.6 24 4-27 11-35 (42)
130 3i2d_A E3 SUMO-protein ligase 74.7 2.9 0.0001 34.0 4.0 47 78-127 250-300 (371)
131 1wew_A DNA-binding family prot 74.5 1.3 4.3E-05 27.7 1.5 48 76-125 15-73 (78)
132 2klu_A T-cell surface glycopro 73.9 4.6 0.00016 24.5 3.7 6 99-104 59-64 (70)
133 1zbd_B Rabphilin-3A; G protein 73.7 2.1 7.3E-05 29.7 2.6 49 75-123 53-106 (134)
134 3a1b_A DNA (cytosine-5)-methyl 73.5 4.2 0.00015 29.1 4.2 47 73-123 75-133 (159)
135 1weu_A Inhibitor of growth fam 73.4 1.8 6.1E-05 28.1 2.0 45 75-124 34-85 (91)
136 2vnf_A ING 4, P29ING4, inhibit 72.9 1.5 5.1E-05 26.0 1.4 42 77-123 10-58 (60)
137 4fo9_A E3 SUMO-protein ligase 72.8 3.5 0.00012 33.4 4.0 47 78-127 216-266 (360)
138 3c6w_A P28ING5, inhibitor of g 72.5 1.6 5.5E-05 25.8 1.5 42 77-123 9-57 (59)
139 1dvp_A HRS, hepatocyte growth 72.4 1.9 6.5E-05 32.2 2.3 35 77-111 161-195 (220)
140 2cs3_A Protein C14ORF4, MY039 72.0 3.9 0.00013 25.9 3.2 38 77-114 15-52 (93)
141 2kwj_A Zinc finger protein DPF 70.7 0.54 1.8E-05 31.7 -1.1 47 79-126 60-110 (114)
142 3zyq_A Hepatocyte growth facto 70.2 2.4 8.1E-05 32.0 2.4 35 77-111 164-198 (226)
143 1wyh_A SLIM 2, skeletal muscle 69.7 3.5 0.00012 24.5 2.7 40 78-127 6-45 (72)
144 3kqi_A GRC5, PHD finger protei 69.5 1.5 5.2E-05 27.1 1.0 46 79-125 12-62 (75)
145 2cu8_A Cysteine-rich protein 2 68.6 3.4 0.00011 25.0 2.5 39 78-127 10-48 (76)
146 2jvx_A NF-kappa-B essential mo 68.3 0.94 3.2E-05 22.8 -0.2 14 115-128 3-16 (28)
147 1x4l_A Skeletal muscle LIM-pro 67.7 4 0.00014 24.3 2.7 40 78-127 6-47 (72)
148 2rsd_A E3 SUMO-protein ligase 67.5 0.83 2.8E-05 27.8 -0.6 44 78-123 11-64 (68)
149 2zet_C Melanophilin; complex, 67.1 3.7 0.00013 29.2 2.7 49 75-124 66-117 (153)
150 1iml_A CRIP, cysteine rich int 66.6 2.8 9.4E-05 25.5 1.7 25 80-107 3-27 (76)
151 1weo_A Cellulose synthase, cat 66.5 23 0.00078 22.8 7.0 49 78-126 17-69 (93)
152 3ask_A E3 ubiquitin-protein li 66.4 1.6 5.3E-05 33.2 0.6 44 79-123 176-224 (226)
153 2gmg_A Hypothetical protein PF 65.8 1.2 4E-05 29.7 -0.2 25 98-127 72-96 (105)
154 1x61_A Thyroid receptor intera 64.8 4.9 0.00017 23.9 2.6 39 78-126 6-44 (72)
155 1x4k_A Skeletal muscle LIM-pro 64.7 3.8 0.00013 24.4 2.1 39 79-127 7-45 (72)
156 2dj7_A Actin-binding LIM prote 64.6 4.8 0.00016 24.8 2.6 39 77-126 15-53 (80)
157 1x63_A Skeletal muscle LIM-pro 63.9 5.3 0.00018 24.4 2.7 40 78-127 16-55 (82)
158 1z60_A TFIIH basal transcripti 63.6 3.8 0.00013 24.3 1.8 42 78-121 16-58 (59)
159 2g6q_A Inhibitor of growth pro 63.0 3.4 0.00012 24.6 1.6 44 77-123 11-59 (62)
160 3f6q_B LIM and senescent cell 62.9 3.7 0.00013 24.3 1.8 41 78-128 12-52 (72)
161 1m3v_A FLIN4, fusion of the LI 62.9 16 0.00055 24.2 5.3 55 78-134 33-88 (122)
162 2k9y_A Ephrin type-A receptor 62.7 3.5 0.00012 22.2 1.5 11 6-16 15-25 (41)
163 3o7a_A PHD finger protein 13 v 61.7 1.8 6.3E-05 24.7 0.2 41 82-123 8-51 (52)
164 2pv0_B DNA (cytosine-5)-methyl 61.0 7.7 0.00026 31.7 3.8 46 74-123 90-147 (386)
165 1g47_A Pinch protein; LIM doma 60.2 5 0.00017 24.2 2.1 40 78-127 12-51 (77)
166 2d8v_A Zinc finger FYVE domain 60.0 6.5 0.00022 23.8 2.4 32 75-111 6-38 (67)
167 1x68_A FHL5 protein; four-and- 59.2 6.3 0.00021 23.8 2.4 39 78-126 6-46 (76)
168 2o35_A Hypothetical protein DU 58.4 3.6 0.00012 27.0 1.2 11 103-113 43-53 (105)
169 3fyb_A Protein of unknown func 58.0 3.7 0.00013 26.9 1.2 11 103-113 42-52 (104)
170 3mpx_A FYVE, rhogef and PH dom 57.7 2.2 7.4E-05 34.9 0.0 49 77-125 375-430 (434)
171 2l3k_A Rhombotin-2, linker, LI 55.5 5.9 0.0002 26.5 2.0 28 79-108 10-37 (123)
172 2jp3_A FXYD domain-containing 54.1 25 0.00086 21.2 4.3 17 8-24 21-37 (67)
173 1zfo_A LAsp-1; LIM domain, zin 53.2 4 0.00014 20.6 0.6 28 78-108 4-31 (31)
174 3kv5_D JMJC domain-containing 52.2 3.9 0.00013 34.5 0.7 49 76-125 36-89 (488)
175 2co8_A NEDD9 interacting prote 51.9 9.3 0.00032 23.5 2.3 39 78-127 16-54 (82)
176 2d8y_A Eplin protein; LIM doma 51.7 19 0.00064 22.4 3.8 39 77-126 15-53 (91)
177 1a7i_A QCRP2 (LIM1); LIM domai 51.1 6.3 0.00021 24.1 1.4 38 78-126 8-45 (81)
178 2akl_A PHNA-like protein PA012 49.7 6.6 0.00023 27.1 1.4 27 77-103 27-54 (138)
179 2ehe_A Four and A half LIM dom 48.0 12 0.0004 22.8 2.3 39 79-127 17-55 (82)
180 2jmi_A Protein YNG1, ING1 homo 47.9 5.3 0.00018 25.7 0.7 46 75-123 24-75 (90)
181 2jrp_A Putative cytoplasmic pr 47.5 8.4 0.00029 24.3 1.5 46 78-134 3-48 (81)
182 1x62_A C-terminal LIM domain p 47.3 11 0.00039 22.8 2.2 38 78-127 16-53 (79)
183 3pwf_A Rubrerythrin; non heme 45.9 12 0.00041 26.8 2.4 26 92-124 137-162 (170)
184 3mjh_B Early endosome antigen 45.5 5.3 0.00018 20.9 0.3 11 116-126 6-16 (34)
185 1x64_A Alpha-actinin-2 associa 45.0 20 0.00068 22.2 3.1 39 77-127 25-63 (89)
186 2d8z_A Four and A half LIM dom 44.5 14 0.00049 21.6 2.3 37 78-126 6-42 (70)
187 2egq_A FHL1 protein; LIM domai 44.4 15 0.0005 22.0 2.4 39 78-127 16-58 (77)
188 2jo1_A Phospholemman; FXYD1, N 44.0 53 0.0018 20.0 6.0 17 9-25 21-37 (72)
189 2ct7_A Ring finger protein 31; 43.6 2.2 7.6E-05 27.0 -1.7 19 93-111 43-61 (86)
190 2rgt_A Fusion of LIM/homeobox 43.4 11 0.00039 26.5 2.0 38 79-126 67-104 (169)
191 2l4z_A DNA endonuclease RBBP8, 43.3 15 0.0005 24.7 2.4 38 78-126 62-99 (123)
192 1nyp_A Pinch protein; LIM doma 43.0 15 0.0005 21.3 2.1 38 78-127 6-43 (66)
193 2pk7_A Uncharacterized protein 43.0 4.2 0.00014 24.9 -0.4 19 109-127 2-20 (69)
194 2jmo_A Parkin; IBR, E3 ligase, 42.2 2 6.7E-05 27.0 -2.1 14 98-111 55-68 (80)
195 2jny_A Uncharacterized BCR; st 41.6 4 0.00014 24.8 -0.6 20 109-128 4-23 (67)
196 1rut_X Flinc4, fusion protein 40.6 16 0.00054 26.2 2.4 28 79-108 71-98 (188)
197 2kpi_A Uncharacterized protein 40.3 9.7 0.00033 22.1 0.9 28 77-104 10-39 (56)
198 1yuz_A Nigerythrin; rubrythrin 40.0 16 0.00054 26.9 2.3 26 92-124 170-195 (202)
199 3kv4_A PHD finger protein 8; e 40.0 7.9 0.00027 32.3 0.7 51 80-130 7-62 (447)
200 2cuq_A Four and A half LIM dom 37.5 21 0.00072 21.4 2.3 38 78-127 16-53 (80)
201 1lko_A Rubrerythrin all-iron(I 37.3 13 0.00044 27.1 1.4 26 93-124 155-180 (191)
202 2dar_A PDZ and LIM domain prot 37.3 16 0.00055 22.7 1.8 38 78-127 26-63 (90)
203 2lcq_A Putative toxin VAPC6; P 36.5 10 0.00036 26.7 0.8 26 95-126 134-159 (165)
204 2iyb_E Testin, TESS, TES; LIM 36.3 19 0.00066 20.8 1.9 39 79-127 4-44 (65)
205 1wig_A KIAA1808 protein; LIM d 36.2 22 0.00074 21.2 2.2 36 79-126 7-42 (73)
206 2d8x_A Protein pinch; LIM doma 35.5 23 0.00079 20.6 2.2 38 78-127 6-43 (70)
207 2cur_A Skeletal muscle LIM-pro 35.2 25 0.00086 20.4 2.3 37 78-126 6-42 (69)
208 2cor_A Pinch protein; LIM doma 35.2 28 0.00096 21.0 2.6 38 78-127 16-53 (79)
209 2jne_A Hypothetical protein YF 34.7 12 0.00039 24.5 0.7 46 78-134 33-78 (101)
210 2zxe_G FXYD10, phospholemman-l 33.4 18 0.00063 22.2 1.4 16 9-24 24-39 (74)
211 1v6g_A Actin binding LIM prote 32.8 23 0.00077 21.4 1.9 36 79-126 17-52 (81)
212 2fiy_A Protein FDHE homolog; F 32.6 5.7 0.0002 31.5 -1.2 48 76-124 181-231 (309)
213 2csz_A Synaptotagmin-like prot 32.5 15 0.00051 22.8 0.9 34 75-108 23-57 (76)
214 2a20_A Regulating synaptic mem 32.5 41 0.0014 19.8 2.8 48 75-123 7-59 (62)
215 1afo_A Glycophorin A; integral 32.2 61 0.0021 17.3 4.2 17 7-23 13-29 (40)
216 1pi7_A VPU protein, U ORF prot 32.1 59 0.002 17.0 4.0 9 13-21 14-22 (36)
217 2jr6_A UPF0434 protein NMA0874 32.0 4.3 0.00015 24.7 -1.6 18 111-128 4-21 (68)
218 1wd2_A Ariadne-1 protein homol 32.0 4.7 0.00016 23.8 -1.4 35 78-112 7-45 (60)
219 2jtn_A LIM domain-binding prot 31.9 14 0.00047 26.4 0.8 46 76-127 86-131 (182)
220 2xjy_A Rhombotin-2; oncoprotei 31.7 30 0.001 22.9 2.5 47 78-126 30-77 (131)
221 1x4i_A Inhibitor of growth pro 31.3 28 0.00097 21.0 2.1 47 78-127 7-58 (70)
222 1twf_L ABC10-alpha, DNA-direct 30.9 28 0.00095 21.2 2.0 16 115-130 45-60 (70)
223 1b8t_A Protein (CRP1); LIM dom 30.4 27 0.00094 25.0 2.3 29 77-108 115-143 (192)
224 2cup_A Skeletal muscle LIM-pro 30.0 22 0.00075 22.4 1.5 29 78-108 67-95 (101)
225 2i50_A Ubiquitin carboxyl-term 29.7 13 0.00044 25.3 0.3 27 98-124 6-37 (126)
226 2js4_A UPF0434 protein BB2007; 29.3 4.6 0.00016 24.7 -1.8 18 111-128 4-21 (70)
227 2dlo_A Thyroid receptor-intera 28.4 27 0.00092 21.0 1.7 38 78-127 16-53 (81)
228 4gut_A Lysine-specific histone 28.3 34 0.0012 30.4 2.9 38 76-114 12-56 (776)
229 2hf1_A Tetraacyldisaccharide-1 28.3 4.2 0.00014 24.8 -2.1 18 111-128 4-21 (68)
230 4bbq_A Lysine-specific demethy 27.6 18 0.00061 23.8 0.7 45 79-123 61-113 (117)
231 3vhs_A ATPase wrnip1; zinc fin 27.5 14 0.00049 17.9 0.2 11 116-126 7-17 (29)
232 1j2o_A FLIN2, fusion of rhombo 27.4 41 0.0014 21.8 2.5 34 78-113 31-65 (114)
233 1r79_A Diacylglycerol kinase, 26.7 86 0.0029 19.6 3.8 43 74-120 35-80 (84)
234 2xqn_T Testin, TESS; metal-bin 25.8 37 0.0013 22.3 2.1 44 78-126 31-74 (126)
235 2ku7_A MLL1 PHD3-CYP33 RRM chi 25.6 92 0.0031 20.2 4.2 26 98-123 7-43 (140)
236 2das_A Zinc finger MYM-type pr 24.2 76 0.0026 18.7 2.9 34 78-111 21-55 (62)
237 1x3h_A Leupaxin; paxillin fami 23.9 55 0.0019 19.4 2.5 38 78-127 16-53 (80)
238 4b6d_A RAC GTPase-activating p 22.8 58 0.002 18.9 2.3 33 77-109 19-51 (61)
239 1l8d_A DNA double-strand break 21.2 23 0.0008 23.0 0.3 13 115-127 47-59 (112)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.79 E-value=1.9e-19 Score=120.71 Aligned_cols=80 Identities=34% Similarity=0.693 Sum_probs=69.0
Q ss_pred CCCCCCCCCCCHHHHhhCCCeecccCC--CCCccccccccccccCCCeeeecCCCCCcccHhhHHHHHcCCCCccccccc
Q 043163 47 TRNSPANKGLKKKILRTLPKQTFTSES--VAKFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQI 124 (172)
Q Consensus 47 ~~~~~~~~~~~~~~i~~l~~~~~~~~~--~~~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~ 124 (172)
........+++++.++.++...+.... ...+..|+|||+.|..++.++.++ |+|.||..||..|++.+.+||+||..
T Consensus 8 ~~~~~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~ 86 (91)
T 2l0b_A 8 HSHMVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCM 86 (91)
T ss_dssp SCCSSCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCB
T ss_pred CCCCcCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCcc
Confidence 344556778999999999998876543 456678999999999999999999 99999999999999999999999998
Q ss_pred ccc
Q 043163 125 LVV 127 (172)
Q Consensus 125 l~~ 127 (172)
+..
T Consensus 87 ~~~ 89 (91)
T 2l0b_A 87 FPP 89 (91)
T ss_dssp SSC
T ss_pred CCC
Confidence 864
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.2e-18 Score=111.31 Aligned_cols=66 Identities=33% Similarity=0.813 Sum_probs=55.2
Q ss_pred HhhCCCeecccCC-CCCccccccccccccCCCeeeecCCCCCcccHhhHHHHHcCCCCcccccccccc
Q 043163 61 LRTLPKQTFTSES-VAKFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILVV 127 (172)
Q Consensus 61 i~~l~~~~~~~~~-~~~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 127 (172)
++.++...+.... ...+.+|+||++.|..++.++.++ |+|.||..||..|++.+.+||+||+.+..
T Consensus 6 i~~lp~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 6 SGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp CSSCCCEEBCSSSCSSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred HhhCCcEEecCccccCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 3456666665433 445678999999999999999999 99999999999999999999999998874
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.70 E-value=5.9e-18 Score=102.69 Aligned_cols=52 Identities=56% Similarity=1.287 Sum_probs=46.8
Q ss_pred CCccccccccccccCCCeeeecCCCCCcccHhhHHHHHcCCCCccccccccc
Q 043163 75 AKFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILV 126 (172)
Q Consensus 75 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 126 (172)
.++.+|+||++.|..++.+..++.|+|.||.+||..|++.+.+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 3456899999999998888888679999999999999999999999999875
No 4
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.68 E-value=4e-17 Score=105.94 Aligned_cols=55 Identities=40% Similarity=0.935 Sum_probs=49.1
Q ss_pred CCCccccccccccccCCCeeeecCCCCCcccHhhHHHHHcCCCCcccccccccccc
Q 043163 74 VAKFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILVVAR 129 (172)
Q Consensus 74 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~ 129 (172)
.....+|+||++.|...+.+..++ |+|.||..||..|++.+.+||+||..+....
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQN 66 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCSC
T ss_pred CCCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCcc
Confidence 345568999999999888888998 9999999999999999999999999998643
No 5
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.68 E-value=3.6e-17 Score=103.75 Aligned_cols=53 Identities=38% Similarity=0.891 Sum_probs=47.8
Q ss_pred CCCccccccccccccCCCeeeecCCCCCcccHhhHHHHHcCCCCcccccccccc
Q 043163 74 VAKFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILVV 127 (172)
Q Consensus 74 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 127 (172)
......|+||++.|..++.++.++ |+|.||..||..|+..+.+||+||..+..
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred CCCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 345567999999998888899998 99999999999999999999999998875
No 6
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=2.8e-17 Score=107.82 Aligned_cols=54 Identities=35% Similarity=0.850 Sum_probs=43.5
Q ss_pred CccccccccccccC-----------CCeeeecCCCCCcccHhhHHHHHcCCCCcccccccccccc
Q 043163 76 KFSDCAICLTEFVN-----------GDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILVVAR 129 (172)
Q Consensus 76 ~~~~C~ICL~~~~~-----------~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~ 129 (172)
++..|+||+++|++ ++.++.++.|+|.||.+||.+|++.+.+||+||+++..+.
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~~ 78 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQR 78 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchhh
Confidence 34567777777753 4556666569999999999999999999999999988654
No 7
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=5.7e-17 Score=104.19 Aligned_cols=52 Identities=35% Similarity=0.852 Sum_probs=47.4
Q ss_pred CCccccccccccccCCCeeeecCCCCCcccHhhHHHHHcCCCCcccccccccc
Q 043163 75 AKFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILVV 127 (172)
Q Consensus 75 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 127 (172)
..+.+|+||++.|...+.+.+++ |+|.||.+||..|++.+.+||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred CCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 44568999999999888898998 99999999999999999999999999874
No 8
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.61 E-value=1.3e-15 Score=105.70 Aligned_cols=51 Identities=29% Similarity=0.681 Sum_probs=41.9
Q ss_pred CccccccccccccCCC---------------eeeecCCCCCcccHhhHHHHH-----cCCCCcccccccccc
Q 043163 76 KFSDCAICLTEFVNGD---------------EIRVLPQCGHGFHVACIDTWL-----GSHSSCPSCRQILVV 127 (172)
Q Consensus 76 ~~~~C~ICL~~~~~~~---------------~~~~l~~C~H~FH~~Ci~~Wl-----~~~~~CP~CR~~l~~ 127 (172)
.+.+|+|||+.|.... .+..++ |+|.||.+||..|+ ..+.+||+||..+..
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 3458999999996643 344777 99999999999999 457789999998874
No 9
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.61 E-value=3.5e-16 Score=94.70 Aligned_cols=50 Identities=34% Similarity=0.681 Sum_probs=43.1
Q ss_pred CccccccccccccCC-CeeeecCCCCCcccHhhHHHHHcCCCCccccccccc
Q 043163 76 KFSDCAICLTEFVNG-DEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILV 126 (172)
Q Consensus 76 ~~~~C~ICL~~~~~~-~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 126 (172)
.+.+|+||++.|.++ +.+..++ |+|.||.+||..|++.+.+||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 456799999999654 4577787 9999999999999999999999998874
No 10
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.59 E-value=3.9e-16 Score=99.30 Aligned_cols=56 Identities=29% Similarity=0.688 Sum_probs=47.1
Q ss_pred CCccccccccccccC----CCeeeecCCCCCcccHhhHHHHHcCCCCcccccccccccccc
Q 043163 75 AKFSDCAICLTEFVN----GDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILVVARCQ 131 (172)
Q Consensus 75 ~~~~~C~ICL~~~~~----~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~~~ 131 (172)
..+.+|+||++.+.+ ++.+..++ |||.||..||..|++.+.+||+||..+...+..
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 67 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRYH 67 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChhhee
Confidence 455689999999865 24557787 999999999999999999999999999866544
No 11
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.58 E-value=1.2e-15 Score=104.85 Aligned_cols=52 Identities=27% Similarity=0.610 Sum_probs=43.8
Q ss_pred CccccccccccccCC---------------CeeeecCCCCCcccHhhHHHHHcCCCCccccccccccc
Q 043163 76 KFSDCAICLTEFVNG---------------DEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILVVA 128 (172)
Q Consensus 76 ~~~~C~ICL~~~~~~---------------~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 128 (172)
.++.|+||++.|+.. ..++.++ |+|.||.+||..||..+.+||+||+.+..+
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~~ 102 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWEFQ 102 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCCEE
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCcceee
Confidence 456799999999753 1356677 999999999999999999999999987644
No 12
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.57 E-value=6.3e-16 Score=96.23 Aligned_cols=55 Identities=27% Similarity=0.654 Sum_probs=45.9
Q ss_pred CccccccccccccCC----CeeeecCCCCCcccHhhHHHHHcCCCCcccccccccccccc
Q 043163 76 KFSDCAICLTEFVNG----DEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILVVARCQ 131 (172)
Q Consensus 76 ~~~~C~ICL~~~~~~----~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~~~ 131 (172)
++.+|+||++.+.+. +.+..++ |||.||.+|+..|+..+..||+||..+...+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 60 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRYH 60 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCEE
T ss_pred CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCcccee
Confidence 346799999999752 4557777 999999999999999999999999998865543
No 13
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=1.4e-15 Score=96.05 Aligned_cols=52 Identities=27% Similarity=0.639 Sum_probs=43.9
Q ss_pred CCCccccccccccccCC----CeeeecCCCCCcccHhhHHHHHcCCCCccccccccc
Q 043163 74 VAKFSDCAICLTEFVNG----DEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILV 126 (172)
Q Consensus 74 ~~~~~~C~ICL~~~~~~----~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 126 (172)
.....+|+||++.|.+. ..+..++ |||.||..||..|+..+..||+||..+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 34556799999999753 3457787 9999999999999999999999999875
No 14
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=3.5e-15 Score=97.47 Aligned_cols=54 Identities=26% Similarity=0.628 Sum_probs=45.1
Q ss_pred CCccccccccccccCCCeeeecCCCC-----CcccHhhHHHHHcCC--CCccccccccccccc
Q 043163 75 AKFSDCAICLTEFVNGDEIRVLPQCG-----HGFHVACIDTWLGSH--SSCPSCRQILVVARC 130 (172)
Q Consensus 75 ~~~~~C~ICL~~~~~~~~~~~l~~C~-----H~FH~~Ci~~Wl~~~--~~CP~CR~~l~~~~~ 130 (172)
..+..|.|||++|++++.+ ++| |+ |.||.+||++|+..+ .+||+||..+..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~ 73 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETK 73 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCC
T ss_pred CCCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcc
Confidence 4456799999999877776 588 96 999999999999764 589999999986543
No 15
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=3.6e-15 Score=95.04 Aligned_cols=54 Identities=30% Similarity=0.516 Sum_probs=45.3
Q ss_pred CCccccccccccccCCCeeeecCCCCCcccHhhHHHHHcCCCCccccccccccccccc
Q 043163 75 AKFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILVVARCQK 132 (172)
Q Consensus 75 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~~~~ 132 (172)
..+.+|+||++.+.+ ...++ |||.||..||..|+..+..||+||..+....+.+
T Consensus 13 ~~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 66 (71)
T 2d8t_A 13 LTVPECAICLQTCVH---PVSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPEDFLDS 66 (71)
T ss_dssp SSCCBCSSSSSBCSS---EEEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCHHHHSC
T ss_pred CCCCCCccCCcccCC---CEEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCHhhccC
Confidence 445679999999865 45667 9999999999999999999999999998765444
No 16
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=7.9e-15 Score=93.69 Aligned_cols=53 Identities=21% Similarity=0.560 Sum_probs=44.1
Q ss_pred CCCccccccccccccCCCeeeecCCCCCcccHhhHHHHHcCCCCcccccccccccc
Q 043163 74 VAKFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILVVAR 129 (172)
Q Consensus 74 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~ 129 (172)
......|+||++.+.+ .+.+++ |||.||..||..|+..+..||+||..+...+
T Consensus 12 ~~~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 12 LTPYILCSICKGYLID--ATTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQ 64 (72)
T ss_dssp CCGGGSCTTTSSCCSS--CEECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred cCCCCCCCCCChHHHC--cCEECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCccc
Confidence 3456689999999965 444447 9999999999999998999999999987643
No 17
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=6.1e-15 Score=93.57 Aligned_cols=49 Identities=37% Similarity=0.913 Sum_probs=42.9
Q ss_pred CCccccccccccccCCCeeeecCCCCCcccHhhHHHHHcCCCCccccccccccc
Q 043163 75 AKFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILVVA 128 (172)
Q Consensus 75 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 128 (172)
.....|+||++.+.+ ..++ |+|.||..||..|+..+..||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred CCCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence 445689999999866 5677 999999999999999999999999988754
No 18
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=1.3e-14 Score=95.78 Aligned_cols=54 Identities=28% Similarity=0.735 Sum_probs=45.8
Q ss_pred CCCccccccccccccCCCe-eeecCCCCCcccHhhHHHHHcCC---CCccccccccccc
Q 043163 74 VAKFSDCAICLTEFVNGDE-IRVLPQCGHGFHVACIDTWLGSH---SSCPSCRQILVVA 128 (172)
Q Consensus 74 ~~~~~~C~ICL~~~~~~~~-~~~l~~C~H~FH~~Ci~~Wl~~~---~~CP~CR~~l~~~ 128 (172)
.....+|+||++.|.+.+. ...++ |||.||..||..|+..+ ..||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred ccCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 4556689999999987664 77787 99999999999999875 7899999988754
No 19
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.50 E-value=6.7e-15 Score=92.81 Aligned_cols=49 Identities=33% Similarity=0.770 Sum_probs=42.6
Q ss_pred CccccccccccccCCCeeeecCCCCCcccHhhHHHHHcCCCCcccccccccc
Q 043163 76 KFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILVV 127 (172)
Q Consensus 76 ~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 127 (172)
.+.+|+||++.+.+ ....++ |||.||..|+..|+..+.+||+||..+..
T Consensus 4 ~~~~C~IC~~~~~~--~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSN--YSMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCS--CEEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccC--CcEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 45679999999854 457788 99999999999999989999999998863
No 20
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.49 E-value=2.1e-15 Score=105.16 Aligned_cols=52 Identities=27% Similarity=0.648 Sum_probs=1.0
Q ss_pred CccccccccccccCC--------------C-eeeecCCCCCcccHhhHHHHHcCCCCccccccccccc
Q 043163 76 KFSDCAICLTEFVNG--------------D-EIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILVVA 128 (172)
Q Consensus 76 ~~~~C~ICL~~~~~~--------------~-~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 128 (172)
.++.|+||++.|+.. + .+..++ |+|.||.+||.+||+.+.+||+||+++..+
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~-C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~~ 113 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWEFQ 113 (117)
T ss_dssp CC------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCC-cCceEcHHHHHHHHHcCCcCCCCCCeeeee
Confidence 456899999999752 2 223345 999999999999999999999999987643
No 21
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=4.5e-14 Score=90.14 Aligned_cols=52 Identities=25% Similarity=0.551 Sum_probs=42.5
Q ss_pred CCCccccccccccccCCCeeeecCCCCCcccHhhHHHHHc---CCCCcccccccccccc
Q 043163 74 VAKFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLG---SHSSCPSCRQILVVAR 129 (172)
Q Consensus 74 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~---~~~~CP~CR~~l~~~~ 129 (172)
...+..|+||++.+.+ ...++ |||.||..||..|+. .+..||+||..+....
T Consensus 17 ~~~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 17 LQEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCCBCTTTCSBCSS---EEECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred CccCCEeccCCcccCC---eEEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 3455689999999865 45567 999999999999996 4568999999987643
No 22
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=3.7e-14 Score=88.98 Aligned_cols=50 Identities=24% Similarity=0.604 Sum_probs=41.3
Q ss_pred CCccccccccccccCCCeeeecCCCCCcccHhhHHHHHc-CCCCccccccccccc
Q 043163 75 AKFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLG-SHSSCPSCRQILVVA 128 (172)
Q Consensus 75 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~l~~~ 128 (172)
.....|+||++.+.+. ..++ |||.||..||..|+. .+..||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSP---KQTE-CGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCCEECTTTCCEESSC---CCCS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CcCCCCCCCChHhcCe---eECC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 4456899999999762 3367 999999999999994 567899999998764
No 23
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=4.8e-14 Score=92.00 Aligned_cols=49 Identities=27% Similarity=0.384 Sum_probs=42.0
Q ss_pred CCCccccccccccccCCCeeeecCCCCCcccHhhHHHHHcCCCCccccccccc
Q 043163 74 VAKFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILV 126 (172)
Q Consensus 74 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 126 (172)
......|+||++.|.+ ..+++ |||.||..||..|+.....||+||..+.
T Consensus 12 ~~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAFQN---PVVTK-CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBCCS---EEECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCCcCCCchhcC---eeEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 3445679999999965 44677 9999999999999998899999999875
No 24
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.45 E-value=6.8e-14 Score=89.83 Aligned_cols=52 Identities=31% Similarity=0.604 Sum_probs=41.7
Q ss_pred CCCccccccccccccCCCeeeecCCCCCcccHhhHHHHHcCC--CCccccccccccc
Q 043163 74 VAKFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGSH--SSCPSCRQILVVA 128 (172)
Q Consensus 74 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~--~~CP~CR~~l~~~ 128 (172)
...+..|+||++.|.+ ...++.|||.||..||..|+..+ ..||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2yur_A 12 IPDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP 65 (74)
T ss_dssp SCGGGSCSSSCCCCTT---CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCT
T ss_pred CCCCCCCcCCChHHhC---CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCc
Confidence 4556689999999975 34465599999999999999765 6899999976543
No 25
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.43 E-value=5.5e-14 Score=100.79 Aligned_cols=48 Identities=31% Similarity=0.783 Sum_probs=41.9
Q ss_pred CccccccccccccCCCeeeecCCCCCcccHhhHHHHHcCCCCcccccccccc
Q 043163 76 KFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILVV 127 (172)
Q Consensus 76 ~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 127 (172)
.+..|+||++.|.+ ..+++ |||.||..||..|+..+.+||+||.++..
T Consensus 52 ~~~~C~iC~~~~~~---~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 52 NELQCIICSEYFIE---AVTLN-CAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HHSBCTTTCSBCSS---EEEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred ccCCCcccCcccCC---ceECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 34579999999965 55678 99999999999999999999999998864
No 26
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.43 E-value=5.3e-14 Score=95.55 Aligned_cols=55 Identities=25% Similarity=0.604 Sum_probs=45.0
Q ss_pred CCccccccccccccCCCeeeecCCCCCcccHhhHHHHHcCC-CCccccccccccccccc
Q 043163 75 AKFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGSH-SSCPSCRQILVVARCQK 132 (172)
Q Consensus 75 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~l~~~~~~~ 132 (172)
..+..|+||++.|.+ .+..++ |||.||..||..|+..+ ..||+||..+....+.+
T Consensus 20 ~~~~~C~IC~~~~~~--p~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~ 75 (100)
T 3lrq_A 20 AEVFRCFICMEKLRD--ARLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVN 75 (100)
T ss_dssp HHHTBCTTTCSBCSS--EEECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEE
T ss_pred CCCCCCccCCccccC--ccccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHh
Confidence 455679999999965 443377 99999999999999887 69999999987665544
No 27
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=1.8e-13 Score=87.78 Aligned_cols=50 Identities=24% Similarity=0.707 Sum_probs=42.1
Q ss_pred CCccccccccccccCCCeeeecCCCCCcccHhhHHHHHcCC--CCcccccccccc
Q 043163 75 AKFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGSH--SSCPSCRQILVV 127 (172)
Q Consensus 75 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~--~~CP~CR~~l~~ 127 (172)
....+|+||++.+..++... .|+|.||..||..||+.+ .+||+||..+..
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~---~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECS---SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCCCcCcchhhHcccCCccC---CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 34567999999998765443 499999999999999887 789999998874
No 28
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.41 E-value=1.7e-13 Score=88.57 Aligned_cols=51 Identities=24% Similarity=0.617 Sum_probs=43.0
Q ss_pred CCCccccccccccccCCCeeeecCCCCCcccHhhHHHHHcC-CCCccccccccccc
Q 043163 74 VAKFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGS-HSSCPSCRQILVVA 128 (172)
Q Consensus 74 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~l~~~ 128 (172)
...+..|+||++.|.+ ...++ |||.||..||..|+.. +..||+||..+...
T Consensus 5 ~~~~~~C~IC~~~~~~---Pv~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 5 FPEYFRCPISLELMKD---PVIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp CSSSSSCTTTSCCCSS---EEEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred CcccCCCCCccccccC---CEEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 3556789999999965 45567 9999999999999987 78899999988754
No 29
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.40 E-value=8.3e-14 Score=98.33 Aligned_cols=57 Identities=26% Similarity=0.607 Sum_probs=47.4
Q ss_pred CCccccccccccccCC----CeeeecCCCCCcccHhhHHHHHcCCCCccccccccccccccc
Q 043163 75 AKFSDCAICLTEFVNG----DEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILVVARCQK 132 (172)
Q Consensus 75 ~~~~~C~ICL~~~~~~----~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~~~~ 132 (172)
.++.+|+||++.|.+. +.+..++ |||.||.+||..|++.+.+||+||..+.......
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~ 65 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHP 65 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEE
T ss_pred CCCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCccccccc
Confidence 3456899999999753 4457787 9999999999999999999999999998665543
No 30
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.39 E-value=2e-13 Score=89.29 Aligned_cols=52 Identities=29% Similarity=0.540 Sum_probs=42.9
Q ss_pred CCccccccccccccCCCeeeecCCCCCcccHhhHHHHHcC------CCCccccccccccccc
Q 043163 75 AKFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGS------HSSCPSCRQILVVARC 130 (172)
Q Consensus 75 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~------~~~CP~CR~~l~~~~~ 130 (172)
..+..|+||++.+.+ ...++ |||.||..||..|+.. ...||+||..+....+
T Consensus 17 ~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 74 (85)
T 2ecw_A 17 KEEVTCPICLELLKE---PVSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNL 74 (85)
T ss_dssp CTTTSCTTTCSCCSS---CEECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCC
T ss_pred ccCCCCcCCChhhCc---ceeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhC
Confidence 445689999999866 33677 9999999999999977 6789999999876433
No 31
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.39 E-value=5.8e-14 Score=90.90 Aligned_cols=53 Identities=32% Similarity=0.568 Sum_probs=43.5
Q ss_pred CCCccccccccccccCCCeeeecCCCCCcccHhhHHHHHcC-------CCCccccccccccccc
Q 043163 74 VAKFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGS-------HSSCPSCRQILVVARC 130 (172)
Q Consensus 74 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~-------~~~CP~CR~~l~~~~~ 130 (172)
...+..|+||++.|.+ ...++ |||.||..||..|+.. ...||+||..+....+
T Consensus 9 ~~~~~~C~IC~~~~~~---p~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l 68 (79)
T 2egp_A 9 VQEEVTCPICLELLTE---PLSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHL 68 (79)
T ss_dssp CCCCCEETTTTEECSS---CCCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGG
T ss_pred cccCCCCcCCCcccCC---eeECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhC
Confidence 3456789999999966 44577 9999999999999976 5689999999876543
No 32
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.39 E-value=2.3e-13 Score=92.00 Aligned_cols=51 Identities=24% Similarity=0.659 Sum_probs=42.5
Q ss_pred CCccccccccccccCCCeeeecCCCCCcccHhhHHHHHcCCCCccccccccccc
Q 043163 75 AKFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILVVA 128 (172)
Q Consensus 75 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 128 (172)
.....|+||++.|.+ .+..++ |||.||..||..|+..+..||+||..+...
T Consensus 20 ~~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 70 (99)
T 2y43_A 20 DDLLRCGICFEYFNI--AMIIPQ-CSHNYCSLCIRKFLSYKTQCPTCCVTVTEP 70 (99)
T ss_dssp HHHTBCTTTCSBCSS--EEECTT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred CCCCCcccCChhhCC--cCEECC-CCCHhhHHHHHHHHHCCCCCCCCCCcCChh
Confidence 344679999999965 444446 999999999999999999999999988754
No 33
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.38 E-value=2.2e-13 Score=85.19 Aligned_cols=54 Identities=26% Similarity=0.525 Sum_probs=42.4
Q ss_pred ccccccccc-cccCCCee-eecCCCCCcccHhhHHHHHcC-CCCcccccccccccccc
Q 043163 77 FSDCAICLT-EFVNGDEI-RVLPQCGHGFHVACIDTWLGS-HSSCPSCRQILVVARCQ 131 (172)
Q Consensus 77 ~~~C~ICL~-~~~~~~~~-~~l~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~l~~~~~~ 131 (172)
+..|+||++ .+.+.... ..++ |||.||..||..|+.. +..||+||..+......
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~ 59 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFR 59 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCE
T ss_pred CCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCccccccce
Confidence 457999999 77665433 4566 9999999999999754 56799999998765443
No 34
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=3.4e-13 Score=88.14 Aligned_cols=52 Identities=33% Similarity=0.611 Sum_probs=43.1
Q ss_pred CCccccccccccccCCCeeeecCCCCCcccHhhHHHHHcC------CCCccccccccccccc
Q 043163 75 AKFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGS------HSSCPSCRQILVVARC 130 (172)
Q Consensus 75 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~------~~~CP~CR~~l~~~~~ 130 (172)
....+|+||++.+.+ ...++ |||.||..|+..|+.. ...||+||..+....+
T Consensus 17 ~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 74 (85)
T 2ecv_A 17 KEEVTCPICLELLTQ---PLSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENI 74 (85)
T ss_dssp CCCCCCTTTCSCCSS---CBCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSC
T ss_pred cCCCCCCCCCcccCC---ceeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhc
Confidence 445689999999965 34567 9999999999999976 7789999999886443
No 35
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=5.1e-13 Score=82.89 Aligned_cols=44 Identities=30% Similarity=0.665 Sum_probs=36.6
Q ss_pred CCCccccccccccccCCCeeeecCCCCCcccHhhHHHHHc---CCCCcccc
Q 043163 74 VAKFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLG---SHSSCPSC 121 (172)
Q Consensus 74 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~---~~~~CP~C 121 (172)
...+..|+||++.+.+ ...++ |||.||..||..|++ .+..||+|
T Consensus 17 ~~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSS---CEECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCC---eEEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3456689999999975 45567 999999999999997 46689998
No 36
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.35 E-value=5.9e-13 Score=91.39 Aligned_cols=51 Identities=24% Similarity=0.594 Sum_probs=43.2
Q ss_pred CCCccccccccccccCCCeeeecCCCCCcccHhhHHHHHcCCCCcccccccccc
Q 043163 74 VAKFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILVV 127 (172)
Q Consensus 74 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 127 (172)
...+..|+||++.|.+ .+..++ |||.||..||..|+..+..||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFID--ATTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp HGGGTBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred cCCcCCCccCChHHhC--cCEeCC-CCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 3456689999999965 454457 99999999999999999999999998874
No 37
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.34 E-value=3.1e-13 Score=95.35 Aligned_cols=57 Identities=28% Similarity=0.672 Sum_probs=47.0
Q ss_pred CCccccccccccccC----CCeeeecCCCCCcccHhhHHHHHcCCCCccccccccccccccc
Q 043163 75 AKFSDCAICLTEFVN----GDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILVVARCQK 132 (172)
Q Consensus 75 ~~~~~C~ICL~~~~~----~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~~~~ 132 (172)
.....|+||++.|.+ ...+..++ |||.||..||.+|+..+.+||+||..+....+.+
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 130 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHP 130 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGEEE
T ss_pred CCCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChhccee
Confidence 445679999999875 23446677 9999999999999999999999999998766543
No 38
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=9e-13 Score=80.21 Aligned_cols=44 Identities=32% Similarity=0.865 Sum_probs=35.8
Q ss_pred CCCccccccccccccCCCeeeecCCCCCcccHhhHHHHHc---CCCCcccc
Q 043163 74 VAKFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLG---SHSSCPSC 121 (172)
Q Consensus 74 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~---~~~~CP~C 121 (172)
......|+||++.+.+ ...++ |||.||..||..|+. .+..||+|
T Consensus 12 ~~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKE---PVIIE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSS---CCCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCc---cEeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3455689999999976 34577 999999999999954 56789998
No 39
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.31 E-value=1.9e-12 Score=95.23 Aligned_cols=50 Identities=38% Similarity=0.672 Sum_probs=41.9
Q ss_pred CCccccccccccccCCCeeeecCCCCCcccHhhHHHHHcC-CCCcccccccccc
Q 043163 75 AKFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGS-HSSCPSCRQILVV 127 (172)
Q Consensus 75 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~l~~ 127 (172)
.....|+||++.|.+ .+..++ |||.||..||..|+.. +..||+||..+..
T Consensus 52 ~~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 52 HSELMCPICLDMLKN--TMTTKE-CLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHHBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCCcccChHhhC--cCEeCC-CCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 345689999999975 555557 9999999999999987 7789999999853
No 40
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.30 E-value=1.4e-12 Score=91.67 Aligned_cols=49 Identities=24% Similarity=0.461 Sum_probs=41.0
Q ss_pred CCccccccccccccCCCeeeecCCCCCcccHhhHHHHHcCC-CCcccccccccc
Q 043163 75 AKFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGSH-SSCPSCRQILVV 127 (172)
Q Consensus 75 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~l~~ 127 (172)
..+..|+||++.|.+ ...++ |||.||..||..|+..+ ..||+||..+..
T Consensus 50 ~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELVFR---PITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHHcC---cEEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 345679999999975 45677 99999999999999854 489999999875
No 41
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.29 E-value=1.5e-12 Score=86.68 Aligned_cols=50 Identities=32% Similarity=0.637 Sum_probs=40.6
Q ss_pred CCCccccccccccccCCCeeeecCCCCCcccHhhHHHHHcC--CCCccccccccc
Q 043163 74 VAKFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGS--HSSCPSCRQILV 126 (172)
Q Consensus 74 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~--~~~CP~CR~~l~ 126 (172)
...+..|+||++.|.+ ...++.|||.||..||..|+.. +..||+||..+.
T Consensus 10 ~~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 10 IPDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCTTTEETTTTEECSS---CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CCcCCCCCCCChhhcC---ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 4556789999999975 3456559999999999999964 368999999874
No 42
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.27 E-value=1.6e-12 Score=89.45 Aligned_cols=50 Identities=26% Similarity=0.561 Sum_probs=40.9
Q ss_pred CccccccccccccCCCeeeecCCCCCcccHhhHHHHHcCCC---Ccccccccccccc
Q 043163 76 KFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGSHS---SCPSCRQILVVAR 129 (172)
Q Consensus 76 ~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~---~CP~CR~~l~~~~ 129 (172)
....|+||++.+.+ ...++ |||.||..||..|+..+. .||+||..+....
T Consensus 20 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 72 (112)
T 1jm7_A 20 KILECPICLELIKE---PVSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS 72 (112)
T ss_dssp HHTSCSSSCCCCSS---CCBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTT
T ss_pred CCCCCcccChhhcC---eEECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhh
Confidence 34579999999865 34467 999999999999998653 8999999887643
No 43
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.25 E-value=2.8e-12 Score=89.45 Aligned_cols=52 Identities=31% Similarity=0.635 Sum_probs=43.0
Q ss_pred CCCccccccccccccCCCeeeecCCCCCcccHhhHHHHHcCCC-Ccccccccccccc
Q 043163 74 VAKFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGSHS-SCPSCRQILVVAR 129 (172)
Q Consensus 74 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~-~CP~CR~~l~~~~ 129 (172)
...+..|+||++.+.+ ...++ |||.||..||..|+..+. .||+||..+....
T Consensus 15 ~~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 67 (118)
T 3hct_A 15 LESKYECPICLMALRE---AVQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67 (118)
T ss_dssp CCGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCcCChhhcC---eEECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCHHh
Confidence 4556689999999965 35577 999999999999998754 9999999887643
No 44
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.24 E-value=3.7e-12 Score=88.41 Aligned_cols=51 Identities=31% Similarity=0.470 Sum_probs=42.7
Q ss_pred CccccccccccccCCCeeeecCCCCCcccHhhHHHHHcC-CCCccccccccccccc
Q 043163 76 KFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGS-HSSCPSCRQILVVARC 130 (172)
Q Consensus 76 ~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~l~~~~~ 130 (172)
.+..|+||++.+.+ ...++ |||.||..||..|+.. +..||+||..+....+
T Consensus 22 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 73 (116)
T 1rmd_A 22 KSISCQICEHILAD---PVETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPTDL 73 (116)
T ss_dssp HHTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred CCCCCCCCCcHhcC---cEEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhc
Confidence 34679999999965 44577 9999999999999986 7789999999886544
No 45
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.22 E-value=6e-12 Score=91.44 Aligned_cols=49 Identities=22% Similarity=0.423 Sum_probs=41.3
Q ss_pred CccccccccccccCCCeeeecCCCCCcccHhhHHHHHcCCC-Cccccccccccc
Q 043163 76 KFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGSHS-SCPSCRQILVVA 128 (172)
Q Consensus 76 ~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~-~CP~CR~~l~~~ 128 (172)
....|+||++.|.+ ...++ |||.||..||..|+.... .||+||..+...
T Consensus 77 ~~~~C~IC~~~~~~---pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQ---PVTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcC---CEEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 44679999999965 44577 999999999999998754 899999998854
No 46
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.21 E-value=1.7e-12 Score=90.07 Aligned_cols=49 Identities=27% Similarity=0.644 Sum_probs=41.1
Q ss_pred CCccccccccccccCCCeeeecCCCCCcccHhhHHHHHcC-CCCcccccccccc
Q 043163 75 AKFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGS-HSSCPSCRQILVV 127 (172)
Q Consensus 75 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~l~~ 127 (172)
..+..|+||++.+.+ ...++ |||.||..||..|+.. +..||+||..+..
T Consensus 13 ~~~~~C~iC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILVE---PVTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCSS---CEECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccCc---eeEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 345679999999865 45667 9999999999999976 6789999998864
No 47
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.20 E-value=5.8e-12 Score=78.61 Aligned_cols=50 Identities=24% Similarity=0.418 Sum_probs=40.4
Q ss_pred CCccccccccccccCCCeee-ecCCCCCc-ccHhhHHHHHcCCCCcccccccccc
Q 043163 75 AKFSDCAICLTEFVNGDEIR-VLPQCGHG-FHVACIDTWLGSHSSCPSCRQILVV 127 (172)
Q Consensus 75 ~~~~~C~ICL~~~~~~~~~~-~l~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~l~~ 127 (172)
..+.+|+||++...+ .+. .+| |||. |+.+|+..|.+.+..||+||+++..
T Consensus 6 ~~~~~C~IC~~~~~~--~~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 6 NAIEPCVICQGRPKN--GCIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQM 57 (64)
T ss_dssp GGGSCCTTTSSSCSC--EEEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred CCcCCCCcCCCCCCC--EEEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence 345579999998754 333 248 9999 8999999999888899999998753
No 48
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.19 E-value=1.5e-11 Score=81.02 Aligned_cols=52 Identities=19% Similarity=0.085 Sum_probs=44.7
Q ss_pred CCCccccccccccccCCCeeeecCCCCCcccHhhHHHHHcCCCCcccccccccccc
Q 043163 74 VAKFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILVVAR 129 (172)
Q Consensus 74 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~ 129 (172)
...+..|+||++.|++ ..+++ |||.|+..||..|+..+.+||+||..+....
T Consensus 11 ~p~~~~CpI~~~~m~d---PV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~ 62 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTD---PVRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTESM 62 (85)
T ss_dssp CCTTTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CchheECcccCchhcC---CeECC-CCCEECHHHHHHHHhcCCCCCCCcCCCChHh
Confidence 3456789999999976 56787 9999999999999998899999999887543
No 49
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.18 E-value=1.8e-11 Score=79.39 Aligned_cols=55 Identities=18% Similarity=0.392 Sum_probs=42.1
Q ss_pred CCCccccccccccccCCCe-eeecCCCCCcccHhhHHHHHcC-CCCcccccccccccc
Q 043163 74 VAKFSDCAICLTEFVNGDE-IRVLPQCGHGFHVACIDTWLGS-HSSCPSCRQILVVAR 129 (172)
Q Consensus 74 ~~~~~~C~ICL~~~~~~~~-~~~l~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~l~~~~ 129 (172)
..++.+|+||++.+...+. +..++ |||.||..|+..|+.. ...||+||+.+....
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred cccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 3556689999999865432 23345 9999999999998854 678999999888643
No 50
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.16 E-value=1.9e-11 Score=82.93 Aligned_cols=52 Identities=19% Similarity=0.057 Sum_probs=44.7
Q ss_pred CCCccccccccccccCCCeeeecCCCCCcccHhhHHHHHcCCCCcccccccccccc
Q 043163 74 VAKFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILVVAR 129 (172)
Q Consensus 74 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~ 129 (172)
...+..|+||++.|.+ ..+++ |||.|+..||..|+..+.+||+||.++....
T Consensus 26 ~p~~~~CpI~~~~m~d---PV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~ 77 (100)
T 2kre_A 26 APDEFRDPLMDTLMTD---PVRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTESM 77 (100)
T ss_dssp CSTTTBCTTTCSBCSS---EEEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCTTS
T ss_pred CcHhhCCcCccCcccC---CeECC-CCCEEchHHHHHHHHcCCCCCCCCCCCChhh
Confidence 4556789999999976 55677 9999999999999998899999999887543
No 51
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.16 E-value=2.2e-11 Score=100.37 Aligned_cols=51 Identities=27% Similarity=0.722 Sum_probs=43.3
Q ss_pred CccccccccccccCCCeeeecCCCCCcccHhhHHHHHc-CCCCccccccccccccc
Q 043163 76 KFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLG-SHSSCPSCRQILVVARC 130 (172)
Q Consensus 76 ~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~l~~~~~ 130 (172)
...+|+||++.+.+ +..++ |||.||..|+..|+. .+..||+||..+.....
T Consensus 331 ~~~~C~ICle~~~~---pv~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~ 382 (389)
T 2y1n_A 331 TFQLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP 382 (389)
T ss_dssp SSSBCTTTSSSBCC---EEEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCEEEE
T ss_pred CCCCCCccCcCCCC---eEEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCCcee
Confidence 34689999999855 66788 999999999999998 68899999999886543
No 52
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.16 E-value=2.9e-11 Score=81.75 Aligned_cols=51 Identities=22% Similarity=0.096 Sum_probs=43.8
Q ss_pred CCccccccccccccCCCeeeecCCCC-CcccHhhHHHHHcCCCCcccccccccccc
Q 043163 75 AKFSDCAICLTEFVNGDEIRVLPQCG-HGFHVACIDTWLGSHSSCPSCRQILVVAR 129 (172)
Q Consensus 75 ~~~~~C~ICL~~~~~~~~~~~l~~C~-H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~ 129 (172)
..+..|+||++.|++ ..+++ || |.|+..||..|+..+.+||+||.++....
T Consensus 20 p~~~~CpI~~~~m~d---PV~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~ 71 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCD---PVVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQ 71 (98)
T ss_dssp CTTTBCTTTCSBCSS---EEECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTT
T ss_pred cHhcCCcCccccccC---CeECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCChhh
Confidence 456689999999976 55677 99 99999999999998889999999887543
No 53
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.15 E-value=1.3e-11 Score=76.74 Aligned_cols=50 Identities=18% Similarity=0.354 Sum_probs=40.2
Q ss_pred CCccccccccccccCCCee-eecCCCCCc-ccHhhHHHHHcCCCCcccccccccc
Q 043163 75 AKFSDCAICLTEFVNGDEI-RVLPQCGHG-FHVACIDTWLGSHSSCPSCRQILVV 127 (172)
Q Consensus 75 ~~~~~C~ICL~~~~~~~~~-~~l~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~l~~ 127 (172)
.....|.||++...+ .+ ..+| |||. |+..|+..|.+.+..||+||+++..
T Consensus 5 ~~~~~C~IC~~~~~~--~~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 5 NLLKPCSLCEKRPRD--GNIIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQL 56 (63)
T ss_dssp GGGSBCTTTSSSBSC--EEEEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred CcCCCCcccCCcCCC--eEEEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence 345579999998644 22 2347 9999 9999999999888899999998853
No 54
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.14 E-value=1.7e-11 Score=88.14 Aligned_cols=49 Identities=20% Similarity=0.456 Sum_probs=40.7
Q ss_pred CCCccccccccccccCCCeeeecCCCCCcccHhhHHHHHcCCC-Cccccccccc
Q 043163 74 VAKFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGSHS-SCPSCRQILV 126 (172)
Q Consensus 74 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~-~CP~CR~~l~ 126 (172)
...+..|+||++.+.+ ...++ |||.||..||..|+.... .||+||.++.
T Consensus 28 l~~~~~C~IC~~~~~~---pv~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 28 LEAKYLCSACRNVLRR---PFQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp CCGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred CCcCcCCCCCChhhcC---cEECC-CCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 4556789999999966 34577 999999999999998654 8999999764
No 55
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.13 E-value=9.9e-12 Score=75.46 Aligned_cols=46 Identities=26% Similarity=0.621 Sum_probs=38.5
Q ss_pred CCccccccccccccCCCeeeecCCCCCcccHhhHHHHHcCCCCcccccccccc
Q 043163 75 AKFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILVV 127 (172)
Q Consensus 75 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 127 (172)
.++..|+||++.|.+ ...++ |||.||..|+..| ...||+||..+..
T Consensus 4 ~~~~~C~IC~~~~~~---p~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKC---PKLLP-CLHTLCSGCLEAS---GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBC---CSCST-TSCCSBTTTCSSS---SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCC---eEEcC-CCCcccHHHHccC---CCCCCcCCcEeec
Confidence 455679999999976 46788 9999999999884 6789999998874
No 56
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.09 E-value=1.7e-11 Score=85.29 Aligned_cols=47 Identities=26% Similarity=0.612 Sum_probs=39.2
Q ss_pred CCccccccccccccCCCeeeec-CCCCCcccHhhHHHHHcCCCCcccccccccc
Q 043163 75 AKFSDCAICLTEFVNGDEIRVL-PQCGHGFHVACIDTWLGSHSSCPSCRQILVV 127 (172)
Q Consensus 75 ~~~~~C~ICL~~~~~~~~~~~l-~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 127 (172)
.....|+||++.|.+ ...+ + |||.||..||..|+. ..||+||..+..
T Consensus 20 ~~~~~C~IC~~~~~~---pv~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 20 EKLLRCSRCTNILRE---PVCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAWI 67 (117)
T ss_dssp HHTTSCSSSCSCCSS---CBCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCSC
T ss_pred hhCCCCCCCChHhhC---ccEeCC-CCCHHHHHHHHHHhc--CCCcCCCCcCcc
Confidence 345679999999965 3455 7 999999999999987 789999998854
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.08 E-value=2.6e-11 Score=77.69 Aligned_cols=44 Identities=27% Similarity=0.713 Sum_probs=37.6
Q ss_pred CccccccccccccCCCeeeecCCCCCc-ccHhhHHHHHcCCCCcccccccccc
Q 043163 76 KFSDCAICLTEFVNGDEIRVLPQCGHG-FHVACIDTWLGSHSSCPSCRQILVV 127 (172)
Q Consensus 76 ~~~~C~ICL~~~~~~~~~~~l~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~l~~ 127 (172)
++..|+||++.+.+ ...+| |||. ||..|+..| ..||+||..+..
T Consensus 23 ~~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCC---EEEET-TCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCC---EEEcC-CCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 34579999998855 56678 9999 999999998 889999998864
No 58
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=99.04 E-value=4e-11 Score=96.87 Aligned_cols=53 Identities=25% Similarity=0.657 Sum_probs=40.5
Q ss_pred CCccccccccccccCCCeee----ecCCCCCcccHhhHHHHHcCC-----------CCcccccccccc
Q 043163 75 AKFSDCAICLTEFVNGDEIR----VLPQCGHGFHVACIDTWLGSH-----------SSCPSCRQILVV 127 (172)
Q Consensus 75 ~~~~~C~ICL~~~~~~~~~~----~l~~C~H~FH~~Ci~~Wl~~~-----------~~CP~CR~~l~~ 127 (172)
....+|+||++.+.++..+. ..+.|+|.||..|+.+|++.. .+||+||+++..
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 45668999999988744332 122499999999999999652 369999998873
No 59
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.00 E-value=1.7e-10 Score=85.08 Aligned_cols=51 Identities=31% Similarity=0.634 Sum_probs=42.5
Q ss_pred CCCccccccccccccCCCeeeecCCCCCcccHhhHHHHHcCC-CCccccccccccc
Q 043163 74 VAKFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGSH-SSCPSCRQILVVA 128 (172)
Q Consensus 74 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~l~~~ 128 (172)
......|+||++.+.+ ...++ |||.||..||..|+..+ ..||+||..+...
T Consensus 15 ~~~~~~C~IC~~~~~~---pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 15 LESKYECPICLMALRE---AVQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp CCGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCChhhcC---cEECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 4566789999999966 34577 99999999999999764 4899999988764
No 60
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.97 E-value=3.4e-10 Score=75.80 Aligned_cols=50 Identities=22% Similarity=0.450 Sum_probs=39.0
Q ss_pred CCccccccccccccCCCeeeecCCCCCcccHhhHHHHHcCC------CCccc--cccc-ccc
Q 043163 75 AKFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGSH------SSCPS--CRQI-LVV 127 (172)
Q Consensus 75 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~------~~CP~--CR~~-l~~ 127 (172)
..+..|+||++.|.+ .| +++.|||.|+..||..|+..+ ..||+ |+.. +..
T Consensus 5 ~~~~~CPI~~~~~~d--PV-~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~ 63 (94)
T 2yu4_A 5 SSGFTCPITKEEMKK--PV-KNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRK 63 (94)
T ss_dssp SSCCBCTTTCSBCSS--EE-EESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCG
T ss_pred CcEeECcCcCchhcC--CE-EcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCH
Confidence 445679999999965 44 453399999999999999753 58999 9866 543
No 61
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.94 E-value=4.8e-10 Score=88.12 Aligned_cols=52 Identities=15% Similarity=0.180 Sum_probs=43.2
Q ss_pred CCCccccccccccccCCCeeeecCCCCCcccHhhHHHHHcC-CCCcccccccccccc
Q 043163 74 VAKFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGS-HSSCPSCRQILVVAR 129 (172)
Q Consensus 74 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~l~~~~ 129 (172)
......|+||++.|.+ ..+++ |||.|+..||..|+.. +.+||+||.++....
T Consensus 205 ~~~~~~c~i~~~~~~d---Pv~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~ 257 (281)
T 2c2l_A 205 IPDYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQ 257 (281)
T ss_dssp CCSTTBCTTTCSBCSS---EEECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCGGG
T ss_pred CCcccCCcCcCCHhcC---CeECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCchhc
Confidence 4566789999999976 55788 9999999999999976 445999999987543
No 62
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.91 E-value=4e-10 Score=75.30 Aligned_cols=52 Identities=25% Similarity=0.559 Sum_probs=41.9
Q ss_pred CccccccccccccCCCeeeecCCCCCcccHhhHHHHHcC--------CCCccc--cccc--cccc
Q 043163 76 KFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGS--------HSSCPS--CRQI--LVVA 128 (172)
Q Consensus 76 ~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~--------~~~CP~--CR~~--l~~~ 128 (172)
...+|+||++.+...+.+...+ |||.||.+|+..++.. ...||. |+.. +...
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~ 67 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQEN 67 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHH
T ss_pred CCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHH
Confidence 3457999999998776776677 9999999999999853 247999 9988 6544
No 63
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.90 E-value=6.6e-10 Score=68.33 Aligned_cols=48 Identities=31% Similarity=0.766 Sum_probs=37.2
Q ss_pred CCccccccccccccCCCeeeecCCCC--C---cccHhhHHHHHcC--CCCccccccccc
Q 043163 75 AKFSDCAICLTEFVNGDEIRVLPQCG--H---GFHVACIDTWLGS--HSSCPSCRQILV 126 (172)
Q Consensus 75 ~~~~~C~ICL~~~~~~~~~~~l~~C~--H---~FH~~Ci~~Wl~~--~~~CP~CR~~l~ 126 (172)
.....|.||+++. ++.+ ++| |. | .||.+|+.+|+.. +.+||+||..+.
T Consensus 4 ~~~~~CrIC~~~~--~~~l-~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEEL--GNER-FRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEEC--SCCC-CCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCC--CCce-ecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 3456799999984 3344 577 65 4 8999999999964 678999998765
No 64
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=5.2e-10 Score=71.70 Aligned_cols=43 Identities=28% Similarity=0.725 Sum_probs=35.7
Q ss_pred ccccccccccccCCCeeeecCCCCCc-ccHhhHHHHHcCCCCcccccccccc
Q 043163 77 FSDCAICLTEFVNGDEIRVLPQCGHG-FHVACIDTWLGSHSSCPSCRQILVV 127 (172)
Q Consensus 77 ~~~C~ICL~~~~~~~~~~~l~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~l~~ 127 (172)
+.+|+||++.+.+ +..+| |||. ||..|+.. ...||+||..+..
T Consensus 25 ~~~C~IC~~~~~~---~~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCC---BCCSS-SCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCcCCCCCCC---EEEec-CCCHHHHHHHhhC----CCCCccCCceecC
Confidence 4579999999755 56688 9999 99999965 3789999998864
No 65
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=9.7e-10 Score=69.25 Aligned_cols=45 Identities=33% Similarity=0.777 Sum_probs=37.2
Q ss_pred CCccccccccccccCCCeeeecCCCCCc-ccHhhHHHHHcCCCCcccccccccc
Q 043163 75 AKFSDCAICLTEFVNGDEIRVLPQCGHG-FHVACIDTWLGSHSSCPSCRQILVV 127 (172)
Q Consensus 75 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~l~~ 127 (172)
.....|.||++...+ +..+| |||. |+..|+.. ...||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVN---WVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCC---CEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCCC---EEEEC-CCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 345679999998654 77888 9999 99999984 4789999998874
No 66
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.84 E-value=2.1e-09 Score=80.00 Aligned_cols=54 Identities=15% Similarity=0.154 Sum_probs=44.2
Q ss_pred CCCCccccccccccccCCCeeeecCCCCCcccHhhHHHHHcC-CCCccccccccccccc
Q 043163 73 SVAKFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGS-HSSCPSCRQILVVARC 130 (172)
Q Consensus 73 ~~~~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~l~~~~~ 130 (172)
.......||||++.|.+ +.+++ |||.|+..||..|+.. ..+||+||.++....+
T Consensus 102 ~ip~~f~CPI~~elm~D---PV~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L 156 (179)
T 2f42_A 102 EIPDYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQL 156 (179)
T ss_dssp CCCGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred CCcHhhcccCccccCCC---CeECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCChhhC
Confidence 35677889999999976 55677 9999999999999976 3479999998875443
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.82 E-value=7.9e-10 Score=71.70 Aligned_cols=45 Identities=31% Similarity=0.670 Sum_probs=37.4
Q ss_pred CccccccccccccCCCeeeecCCCCCc-ccHhhHHHHHcCCCCccccccccccc
Q 043163 76 KFSDCAICLTEFVNGDEIRVLPQCGHG-FHVACIDTWLGSHSSCPSCRQILVVA 128 (172)
Q Consensus 76 ~~~~C~ICL~~~~~~~~~~~l~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 128 (172)
.+..|+||++.+.+ +..+| |||. |+..|+..| ..||+||..+...
T Consensus 17 ~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 17 EAMLCMVCCEEEIN---STFCP-CGHTVCCESCAAQL----QSCPVCRSRVEHV 62 (79)
T ss_dssp HHTBCTTTSSSBCC---EEEET-TCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred CCCEeEEeCcccCc---EEEEC-CCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence 34579999998755 66788 9999 999999887 4999999988753
No 68
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.72 E-value=7.3e-09 Score=80.98 Aligned_cols=52 Identities=21% Similarity=0.453 Sum_probs=42.0
Q ss_pred CCccccccccccccCCCeeeecCCCCCcccHhhHHHHHcCC--CCccc--ccccccccc
Q 043163 75 AKFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGSH--SSCPS--CRQILVVAR 129 (172)
Q Consensus 75 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~--~~CP~--CR~~l~~~~ 129 (172)
..+..||||++.|.+ .|+.+. |||.|+..||..|+..+ ..||+ ||..+....
T Consensus 179 ~~el~CPIcl~~f~D--PVts~~-CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~d 234 (267)
T 3htk_C 179 KIELTCPITCKPYEA--PLISRK-CNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRD 234 (267)
T ss_dssp BCCSBCTTTSSBCSS--EEEESS-SCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGG
T ss_pred ceeeECcCccCcccC--CeeeCC-CCCcccHHHHHHHHHhCCCCCCCcccccCcCchhh
Confidence 445579999999955 666566 99999999999999764 47999 999876544
No 69
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.66 E-value=8.1e-09 Score=63.61 Aligned_cols=52 Identities=12% Similarity=0.101 Sum_probs=43.4
Q ss_pred cccccccccccCCCeeeecCCCCCcccHhhHHHHHcCCCCccccccccccccccc
Q 043163 78 SDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILVVARCQK 132 (172)
Q Consensus 78 ~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~~~~ 132 (172)
..|+||++.+++ .+...+ +||.|.+.||.+|++.+.+||+.+.+|....+.+
T Consensus 4 ~~CpIs~~~m~d--PV~~~~-sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip 55 (61)
T 2bay_A 4 MLCAISGKVPRR--PVLSPK-SRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVE 55 (61)
T ss_dssp CCCTTTCSCCSS--EEEETT-TTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEE
T ss_pred EEecCCCCCCCC--CEEeCC-CCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEE
Confidence 469999999975 444326 9999999999999988888999999998776654
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.63 E-value=6.1e-09 Score=84.97 Aligned_cols=45 Identities=29% Similarity=0.745 Sum_probs=38.0
Q ss_pred CCccccccccccccCCCeeeecCCCCCc-ccHhhHHHHHcCCCCcccccccccc
Q 043163 75 AKFSDCAICLTEFVNGDEIRVLPQCGHG-FHVACIDTWLGSHSSCPSCRQILVV 127 (172)
Q Consensus 75 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~l~~ 127 (172)
..+..|+||++.+.+ +..+| |||. ||..|+..| ..||+||..+..
T Consensus 293 ~~~~~C~IC~~~~~~---~v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 293 QEERTCKVCMDKEVS---VVFIP-CGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp HTTCBCTTTSSSBCC---EEEET-TCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred cCCCCCCccCCcCCc---eEEcC-CCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 344679999999865 56678 9999 999999988 789999998864
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.47 E-value=8.9e-08 Score=63.90 Aligned_cols=51 Identities=22% Similarity=0.371 Sum_probs=41.7
Q ss_pred ccccccccccCCCeeeecCCCCCcccHhhHHHHHc-CCCCccccccccccccccc
Q 043163 79 DCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLG-SHSSCPSCRQILVVARCQK 132 (172)
Q Consensus 79 ~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~l~~~~~~~ 132 (172)
.|.+|--.+.. -.|+.| |+|+|+.+|+..|.+ ....||+|+.++..-+..+
T Consensus 3 fC~~C~~Pi~i--ygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~~~ 54 (101)
T 3vk6_A 3 FCDKCGLPIKV--YGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQCT 54 (101)
T ss_dssp BCTTTCSBCSE--EEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEEEE
T ss_pred ecCccCCCeEE--Eeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeeeeeEEec
Confidence 48888887744 789999 999999999999985 4688999999887655443
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.29 E-value=6.3e-07 Score=69.53 Aligned_cols=50 Identities=24% Similarity=0.697 Sum_probs=40.5
Q ss_pred CccccccccccccCCCeeeecCCCCCcccHhhHHHHHcCCC--Cccccccccccc
Q 043163 76 KFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGSHS--SCPSCRQILVVA 128 (172)
Q Consensus 76 ~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~--~CP~CR~~l~~~ 128 (172)
...+|.||.+-+..+. ..+.|+|.||..|+..|++.+. .||.|+..+..+
T Consensus 179 ~i~~C~iC~~iv~~g~---~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQ---SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp TCCBCTTTCSBCSSCE---ECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCCcCcchhhHHhCCc---ccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 4567999999987653 3334999999999999998754 899999987743
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=96.48 E-value=0.0065 Score=39.81 Aligned_cols=48 Identities=21% Similarity=0.371 Sum_probs=38.3
Q ss_pred CCccccccccccccCCCeeeecCCCCCcccHhhHHHHHcCCCCcccccccccc
Q 043163 75 AKFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILVV 127 (172)
Q Consensus 75 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 127 (172)
..-..|-.|+-+.+. ++.. ..|.+|..|+...|.....||+|+.+|..
T Consensus 26 ~G~~nCKsCWf~~k~---LV~C--~dHYLCl~CLtlmL~~SdrCpIC~~pLPt 73 (99)
T 2ko5_A 26 LGPQFCKSCWFENKG---LVEC--NNHYLCLNCLTLLLSVSNRCPICKMPLPT 73 (99)
T ss_dssp SCCCCCCSSCSCCSS---EEEC--SSCEEEHHHHHHTCSSSSEETTTTEECCC
T ss_pred cCcccChhhccccCC---eeee--cchhhHHHHHHHHHhhccCCcccCCcCCc
Confidence 344569999987644 4332 45999999999999999999999999984
No 74
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=95.98 E-value=0.004 Score=38.39 Aligned_cols=45 Identities=22% Similarity=0.385 Sum_probs=33.3
Q ss_pred CccccccccccccCCCeeeecCCCCCcccHhhHHHHHcC----CCCccccccc
Q 043163 76 KFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGS----HSSCPSCRQI 124 (172)
Q Consensus 76 ~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~ 124 (172)
....|.||.+. + .+.....|...||..|+...+.. .-.||.|+..
T Consensus 11 ~~~~C~vC~~~---~-~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 11 PGARCGVCGDG---T-DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TTCCCTTTSCC---T-TCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCcCCCCCC---C-eEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 34569999753 3 35566679999999999988755 3469999754
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.72 E-value=0.0067 Score=40.07 Aligned_cols=34 Identities=12% Similarity=0.302 Sum_probs=25.1
Q ss_pred ccccccccccccCCCeeeecCCCCCcccHhhHHHH
Q 043163 77 FSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTW 111 (172)
Q Consensus 77 ~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~W 111 (172)
+..|.||++.+.......-+. |+|.|+..|+..+
T Consensus 3 e~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHH
Confidence 457999998753333333366 9999999999984
No 76
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=94.63 E-value=0.01 Score=36.09 Aligned_cols=50 Identities=20% Similarity=0.454 Sum_probs=35.8
Q ss_pred CCccccccccccccCCCeeeecCCCCCcccHhhHHHHHc-----CCCCccccccc
Q 043163 75 AKFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLG-----SHSSCPSCRQI 124 (172)
Q Consensus 75 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~-----~~~~CP~CR~~ 124 (172)
.+...|+||...+.++...+....|..=||..|+..-.. ....||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 344569999998866555666666998899999764321 35679999753
No 77
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=94.60 E-value=0.034 Score=35.66 Aligned_cols=36 Identities=19% Similarity=0.433 Sum_probs=24.1
Q ss_pred CCCccccccccccccCCCeeeecCCCCCcccHhhHHHH
Q 043163 74 VAKFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTW 111 (172)
Q Consensus 74 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~W 111 (172)
...+..|.||-. +..++.. -..-|+-+||..|+.+-
T Consensus 12 ~~~D~~C~VC~~-~t~~~l~-pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 12 VVNDEMCDVCEV-WTAESLF-PCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCSCCCTTTCC-CCSSCCS-SCSSSSSCCCHHHHHHH
T ss_pred CCCCcccCcccc-cccccee-ccccccccccHhhcccc
Confidence 345667999963 3333332 22249999999999996
No 78
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=94.56 E-value=0.028 Score=33.90 Aligned_cols=45 Identities=29% Similarity=0.756 Sum_probs=32.6
Q ss_pred CCccccccccccccCCCeeeecCCCCCcccHhhHHHHHcC----CCCcccccc
Q 043163 75 AKFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGS----HSSCPSCRQ 123 (172)
Q Consensus 75 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~----~~~CP~CR~ 123 (172)
..+..|.+|.+. + .+.....|...||..|+..-+.. .-.||.|+.
T Consensus 9 ~~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQG---G-EIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCC---S-SEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCccCCCC---C-cEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 455679999873 3 45555569999999999875432 346999965
No 79
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=94.32 E-value=0.023 Score=35.59 Aligned_cols=52 Identities=17% Similarity=0.361 Sum_probs=36.9
Q ss_pred CCccccccccccccCCCeeeecCCCCCcccHhhHHHHHc----CCCCcccccccccc
Q 043163 75 AKFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLG----SHSSCPSCRQILVV 127 (172)
Q Consensus 75 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~----~~~~CP~CR~~l~~ 127 (172)
.+...|.||..... ++.++....|..-||..|+..-.. ....||.|+..+..
T Consensus 16 ~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 16 NQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp CEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred CCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 34456999988753 445556667999999999876443 24569999877654
No 80
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=94.10 E-value=0.011 Score=35.65 Aligned_cols=48 Identities=23% Similarity=0.603 Sum_probs=33.5
Q ss_pred CCccccccccccccCCCeeeecCCCCCcccHhhHHHHHcC----CCCccccccccc
Q 043163 75 AKFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGS----HSSCPSCRQILV 126 (172)
Q Consensus 75 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~l~ 126 (172)
..+..|.||.+. + .+.....|...||..|+..-+.. .-.||.|+....
T Consensus 7 ~~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 58 (61)
T 1mm2_A 7 HHMEFCRVCKDG---G-ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPAL 58 (61)
T ss_dssp SSCSSCTTTCCC---S-SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCC
T ss_pred CCCCcCCCCCCC---C-CEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCchh
Confidence 455679999863 3 45555569999999999864433 346999976544
No 81
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=93.58 E-value=0.026 Score=34.40 Aligned_cols=51 Identities=24% Similarity=0.605 Sum_probs=36.0
Q ss_pred CCcccccccccccc-CCCeeeecCCCCCcccHhhHHHHH-------cCCCCcccccccc
Q 043163 75 AKFSDCAICLTEFV-NGDEIRVLPQCGHGFHVACIDTWL-------GSHSSCPSCRQIL 125 (172)
Q Consensus 75 ~~~~~C~ICL~~~~-~~~~~~~l~~C~H~FH~~Ci~~Wl-------~~~~~CP~CR~~l 125 (172)
..+..|.||..... .+..+.....|...||..|+..=+ ...-.||.|+...
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 45567999998642 344666677799999999988532 2345699996643
No 82
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.28 E-value=0.014 Score=34.56 Aligned_cols=46 Identities=24% Similarity=0.670 Sum_probs=32.3
Q ss_pred CCCccccccccccccCCCeeeecCCCCCcccHhhHHHHHcC----CCCcccccc
Q 043163 74 VAKFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGS----HSSCPSCRQ 123 (172)
Q Consensus 74 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~----~~~CP~CR~ 123 (172)
...+..|.+|.+. + .+.....|...||..|+.+=+.. .-.||.|+.
T Consensus 6 ~~~~~~C~vC~~~---g-~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS---S-CCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCC---C-eEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 3456679999874 3 45555569999999999864433 335998854
No 83
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=92.82 E-value=0.039 Score=40.79 Aligned_cols=48 Identities=19% Similarity=0.432 Sum_probs=35.5
Q ss_pred cccccccccccCCCe---eeecCCCCCcccHhhHHH------HHc-----CCCCcccccccc
Q 043163 78 SDCAICLTEFVNGDE---IRVLPQCGHGFHVACIDT------WLG-----SHSSCPSCRQIL 125 (172)
Q Consensus 78 ~~C~ICL~~~~~~~~---~~~l~~C~H~FH~~Ci~~------Wl~-----~~~~CP~CR~~l 125 (172)
..|+||...|.+++. ++....|..=||..|+.- -+. ....||.|+..-
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 359999999988763 666667999999999642 111 157899998753
No 84
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=92.42 E-value=0.034 Score=41.73 Aligned_cols=47 Identities=28% Similarity=0.499 Sum_probs=34.6
Q ss_pred CCccccccccccccCCCeeeecCCCCCcccHhhHHHHHcC----CCCcccccccc
Q 043163 75 AKFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGS----HSSCPSCRQIL 125 (172)
Q Consensus 75 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~l 125 (172)
..+..|.+|.+. ..+.....|...||..|+.+-+.. ...||.|+..-
T Consensus 5 ~~~~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 5 PNEDWCAVCQNG----GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSCSSBTTTCCC----EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCC----CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 455679999753 346667779999999999876543 34699997643
No 85
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=92.18 E-value=0.048 Score=35.35 Aligned_cols=50 Identities=18% Similarity=0.422 Sum_probs=35.9
Q ss_pred ccccccccccccC-CCeeeecCCCCCcccHhhHHHHHc--------CCCCccccccccc
Q 043163 77 FSDCAICLTEFVN-GDEIRVLPQCGHGFHVACIDTWLG--------SHSSCPSCRQILV 126 (172)
Q Consensus 77 ~~~C~ICL~~~~~-~~~~~~l~~C~H~FH~~Ci~~Wl~--------~~~~CP~CR~~l~ 126 (172)
+..|.||...-.. +..+.....|...||..|+.+=+. ....||.|+....
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 4569999986332 346667777999999999986543 2457999976543
No 86
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=92.04 E-value=0.023 Score=34.10 Aligned_cols=47 Identities=23% Similarity=0.679 Sum_probs=33.6
Q ss_pred CccccccccccccCCCeeeecCCCCCcccHhhHHHHHcC----CCCccccccccc
Q 043163 76 KFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGS----HSSCPSCRQILV 126 (172)
Q Consensus 76 ~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~l~ 126 (172)
.+..|.+|... + .+.....|...||..|+.+=+.. .-.||.|+....
T Consensus 4 ~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 4 HEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54 (60)
T ss_dssp CCSSCTTTCCC---S-SCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred CCCCCcCCCCC---C-cEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence 45679999874 3 45555569999999999864432 346999977655
No 87
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=91.94 E-value=0.065 Score=34.74 Aligned_cols=55 Identities=20% Similarity=0.335 Sum_probs=38.0
Q ss_pred CCccccccccccc-cCCCeeeecCCCCCcccHhhHHHHH--cCCCCcccccccccccc
Q 043163 75 AKFSDCAICLTEF-VNGDEIRVLPQCGHGFHVACIDTWL--GSHSSCPSCRQILVVAR 129 (172)
Q Consensus 75 ~~~~~C~ICL~~~-~~~~~~~~l~~C~H~FH~~Ci~~Wl--~~~~~CP~CR~~l~~~~ 129 (172)
..+..|.||.+.- .+.+.+.....|.-.||..|+..-+ ...-.||.|........
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~~~ 80 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARPA 80 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTSCC
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccchhh
Confidence 4456799999753 3344666777799999999997532 12446999977655443
No 88
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=91.80 E-value=0.29 Score=33.98 Aligned_cols=52 Identities=19% Similarity=0.337 Sum_probs=36.8
Q ss_pred cCCCCCccccccccccccCCCeeeecCCCCCcccHhhHHHHH-----------cCCCCccccccccc
Q 043163 71 SESVAKFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWL-----------GSHSSCPSCRQILV 126 (172)
Q Consensus 71 ~~~~~~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl-----------~~~~~CP~CR~~l~ 126 (172)
.++...++.|.||-+- -.+.....|-..||.+||.+-+ ...-.|++|+..-+
T Consensus 51 ~d~Dg~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~pl 113 (129)
T 3ql9_A 51 RDSDGMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPEPL 113 (129)
T ss_dssp BCTTSCBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCGGG
T ss_pred cCCCCCCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCHHH
Confidence 3345666779999864 3566666799999999999752 12457999976543
No 89
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=91.70 E-value=0.27 Score=30.96 Aligned_cols=50 Identities=18% Similarity=0.363 Sum_probs=34.2
Q ss_pred ccccccccccccCCCeeeecCCCCCcccHhhHHHHH-----cCCCCcccccccccc
Q 043163 77 FSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWL-----GSHSSCPSCRQILVV 127 (172)
Q Consensus 77 ~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl-----~~~~~CP~CR~~l~~ 127 (172)
...| ||...+..+...+....|..=||..|+.--- .....||.|+.....
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~ 66 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFGP 66 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSCS
T ss_pred ccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccCC
Confidence 3457 9998886455555555698889999985321 135679999876543
No 90
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=91.59 E-value=0.084 Score=30.31 Aligned_cols=44 Identities=25% Similarity=0.710 Sum_probs=30.1
Q ss_pred ccccccccccCCCeeeecCCCCCcccHhhHHHHHcC----CCCcccccc
Q 043163 79 DCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGS----HSSCPSCRQ 123 (172)
Q Consensus 79 ~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~----~~~CP~CR~ 123 (172)
.|.||...-.. +.+.....|...||..|+.+=+.. .-.||.|+.
T Consensus 2 ~C~vC~~~~~~-~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGED-DKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCC-SCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCC-CCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 48899875433 345556679999999999753432 335999964
No 91
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=91.48 E-value=0.12 Score=37.87 Aligned_cols=46 Identities=26% Similarity=0.580 Sum_probs=33.6
Q ss_pred CccccccccccccCCCeeeecCCCCCcccHhhHHHHHcC----CCCcccccccc
Q 043163 76 KFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGS----HSSCPSCRQIL 125 (172)
Q Consensus 76 ~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~l 125 (172)
.+..|.+|.+. ++ +.....|...||..|+.+-+.. ...||.|+..-
T Consensus 3 ~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG---GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC---SS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC---Ce-eeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 45679999854 33 5566679999999998776543 34699998654
No 92
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=91.37 E-value=0.27 Score=34.69 Aligned_cols=48 Identities=25% Similarity=0.438 Sum_probs=35.4
Q ss_pred CCCCccccccccccccCCCeeeecCCCCCcccHhhHHHHHc-----------CCCCccccccc
Q 043163 73 SVAKFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLG-----------SHSSCPSCRQI 124 (172)
Q Consensus 73 ~~~~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~-----------~~~~CP~CR~~ 124 (172)
+...+..|.+|-+. + .+.....|-..||..||.+-+. ..-.||+|+..
T Consensus 59 ~Dg~~d~C~vC~~G---G-~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 59 SDGMDEQCRWCAEG---G-NLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp TTSCBCSCSSSCCC---S-SEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCCCeecccCCC---C-cEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 34567789999874 3 4555666999999999997652 24579999754
No 93
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=91.12 E-value=0.1 Score=32.40 Aligned_cols=50 Identities=22% Similarity=0.398 Sum_probs=35.1
Q ss_pred CCccccccccccc-cCCCeeeecCCCCCcccHhhHHHHH--cCCCCccccccc
Q 043163 75 AKFSDCAICLTEF-VNGDEIRVLPQCGHGFHVACIDTWL--GSHSSCPSCRQI 124 (172)
Q Consensus 75 ~~~~~C~ICL~~~-~~~~~~~~l~~C~H~FH~~Ci~~Wl--~~~~~CP~CR~~ 124 (172)
..+..|.||.+.- .+++.+.....|.-.||..|+..-. ...-.||.|+..
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 4456799998753 3445666777799999999987532 124469999653
No 94
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=91.00 E-value=0.36 Score=32.45 Aligned_cols=46 Identities=22% Similarity=0.558 Sum_probs=31.4
Q ss_pred ccccccccccc-----cCCCeeeecCCCCCcccHhhHHH------HH-cCCCCccccc
Q 043163 77 FSDCAICLTEF-----VNGDEIRVLPQCGHGFHVACIDT------WL-GSHSSCPSCR 122 (172)
Q Consensus 77 ~~~C~ICL~~~-----~~~~~~~~l~~C~H~FH~~Ci~~------Wl-~~~~~CP~CR 122 (172)
...|.+|+..- ..++.++....|+..||..|+.. .+ ...-.||-|+
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 45699999753 12345666667999999999953 12 3355687775
No 95
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=90.97 E-value=0.059 Score=36.43 Aligned_cols=45 Identities=31% Similarity=0.656 Sum_probs=32.1
Q ss_pred ccccccccccCCCeeeecCCCCCcccHhhHHHHHcC----CCCcccccc
Q 043163 79 DCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGS----HSSCPSCRQ 123 (172)
Q Consensus 79 ~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~----~~~CP~CR~ 123 (172)
.|.||.+.-.+++.+.....|...||..|+.+-|.. .-.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 588888753344456666679999999998765533 346999974
No 96
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=90.25 E-value=0.064 Score=32.74 Aligned_cols=46 Identities=33% Similarity=0.691 Sum_probs=32.4
Q ss_pred CCccccccccccccCCCeeeecCCCCCcccHhhHHHHHcC----CCCccccccc
Q 043163 75 AKFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGS----HSSCPSCRQI 124 (172)
Q Consensus 75 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~ 124 (172)
..+..|.||.+. + .+.....|...||..|+.+=+.. .-.||.|...
T Consensus 6 ~~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 6 KNEDECAVCRDG---G-ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp SCCCSBSSSSCC---S-SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCccCCCC---C-CEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 345679999864 3 45555569999999999864432 3469999653
No 97
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=90.21 E-value=0.076 Score=35.69 Aligned_cols=47 Identities=23% Similarity=0.536 Sum_probs=31.3
Q ss_pred CCccccccccccccCCCeeeecCCCCCcccHhhHHHHHcC----CCCccccc
Q 043163 75 AKFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGS----HSSCPSCR 122 (172)
Q Consensus 75 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~----~~~CP~CR 122 (172)
..+..|.||.+.=+.. .+.....|...||..|+...+.. ...||.|+
T Consensus 5 ~~~~~C~~C~~~g~~~-~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLL-DQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCTT-TSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCCc-CCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 4556799998863222 23444569999999999877642 33566654
No 98
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=90.11 E-value=0.27 Score=29.92 Aligned_cols=34 Identities=24% Similarity=0.551 Sum_probs=27.0
Q ss_pred CccccccccccccCCCeeeecC-CCCCcccHhhHH
Q 043163 76 KFSDCAICLTEFVNGDEIRVLP-QCGHGFHVACID 109 (172)
Q Consensus 76 ~~~~C~ICL~~~~~~~~~~~l~-~C~H~FH~~Ci~ 109 (172)
....|++|...+.+++..+... .|.--||..|+.
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 3456999999998877777776 799999999974
No 99
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.07 E-value=0.13 Score=33.54 Aligned_cols=50 Identities=20% Similarity=0.420 Sum_probs=34.4
Q ss_pred CCccccccccccccCCCeeeecCCCCCcccHhhHHHHHcC----CCCcccccccc
Q 043163 75 AKFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGS----HSSCPSCRQIL 125 (172)
Q Consensus 75 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~l 125 (172)
.....|.||...-.. +.+.....|...||..|+.+=+.. .-.||.|+..-
T Consensus 14 ~~~~~C~vC~~~~~~-~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~~ 67 (92)
T 2e6r_A 14 IDSYICQVCSRGDED-DKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILAE 67 (92)
T ss_dssp CCCCCCSSSCCSGGG-GGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHHH
T ss_pred cCCCCCccCCCcCCC-CCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCcc
Confidence 445579999886432 345566679999999999743322 34599996643
No 100
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=89.99 E-value=0.52 Score=26.38 Aligned_cols=12 Identities=25% Similarity=0.445 Sum_probs=5.0
Q ss_pred hHHHHHHHHHHH
Q 043163 6 ILAALLCALICV 17 (172)
Q Consensus 6 i~~~~l~~li~v 17 (172)
|...+++.++++
T Consensus 13 IA~gVVgGv~~~ 24 (44)
T 2ks1_B 13 IATGMVGALLLL 24 (44)
T ss_dssp STHHHHHHHHHH
T ss_pred EEeehhHHHHHH
Confidence 344444433333
No 101
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=89.61 E-value=0.86 Score=25.47 Aligned_cols=13 Identities=23% Similarity=0.419 Sum_probs=5.4
Q ss_pred hHHHHHHHHHHHH
Q 043163 6 ILAALLCALICVL 18 (172)
Q Consensus 6 i~~~~l~~li~vi 18 (172)
|...+++.+++++
T Consensus 12 IA~gVVgGv~~v~ 24 (44)
T 2l2t_A 12 IAAGVIGGLFILV 24 (44)
T ss_dssp HHHHHHHHHHHHH
T ss_pred EEEeehHHHHHHH
Confidence 4444444344333
No 102
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=88.60 E-value=0.26 Score=35.64 Aligned_cols=48 Identities=21% Similarity=0.382 Sum_probs=34.4
Q ss_pred CccccccccccccCCCeeeecCCCCCcccHhhHHHHH-----cCCCCccccccc
Q 043163 76 KFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWL-----GSHSSCPSCRQI 124 (172)
Q Consensus 76 ~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl-----~~~~~CP~CR~~ 124 (172)
....| +|.....++..++....|..-||..|+..-- .....||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 34569 9998876555566666799999999985211 235679999764
No 103
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=88.43 E-value=0.15 Score=29.48 Aligned_cols=44 Identities=16% Similarity=0.323 Sum_probs=30.9
Q ss_pred ccccccccccCCCeeeecC-CCCCcccHhhHHHH----HcCCCCccccc
Q 043163 79 DCAICLTEFVNGDEIRVLP-QCGHGFHVACIDTW----LGSHSSCPSCR 122 (172)
Q Consensus 79 ~C~ICL~~~~~~~~~~~l~-~C~H~FH~~Ci~~W----l~~~~~CP~CR 122 (172)
.|.+|...+.+++..+... .|..=||..|+..- ...+..||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 3779999887666666665 58888999996532 12566799885
No 104
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=88.39 E-value=0.7 Score=26.99 Aligned_cols=30 Identities=23% Similarity=0.359 Sum_probs=14.3
Q ss_pred eehHHHHHH-HHHHHHHHHHHHHHHHHhhcc
Q 043163 4 VVILAALLC-ALICVLGLIAVARCAWLRRLS 33 (172)
Q Consensus 4 ~ii~~~~l~-~li~vi~l~~~~r~~~~r~~~ 33 (172)
++|++++++ .+++++.++.++++.+.+|.+
T Consensus 10 WiIi~svl~GLLLL~Lii~~LwK~GFFKR~~ 40 (54)
T 2l8s_A 10 WVILLSAFAGLLLLMLLILALWKIGFFKRPL 40 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcccCCC
Confidence 344444444 444444445555666555433
No 105
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=87.88 E-value=0.36 Score=32.60 Aligned_cols=45 Identities=27% Similarity=0.554 Sum_probs=30.3
Q ss_pred ccccccccccc------CCCeeeecCCCCCcccHhhHHHHH-------cCCCCccccc
Q 043163 78 SDCAICLTEFV------NGDEIRVLPQCGHGFHVACIDTWL-------GSHSSCPSCR 122 (172)
Q Consensus 78 ~~C~ICL~~~~------~~~~~~~l~~C~H~FH~~Ci~~Wl-------~~~~~CP~CR 122 (172)
..|.||+..-. +++.++....|+..||..|+.... ...-.||.|+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 35999997542 124566666799999999987542 2345677774
No 106
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=87.66 E-value=0.2 Score=32.52 Aligned_cols=47 Identities=26% Similarity=0.559 Sum_probs=33.4
Q ss_pred CCCccccccccccccCCCeeeecCCCCCcccHhhHHHHHcC----CCCccccccc
Q 043163 74 VAKFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGS----HSSCPSCRQI 124 (172)
Q Consensus 74 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~ 124 (172)
...+..|.+|.+. + .+.....|.-.||..|+.+=+.. .-.||.|+..
T Consensus 22 d~n~~~C~vC~~~---g-~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 22 DDSATICRVCQKP---G-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSCCSSSCSS---S-CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCCcCcCcCCC---C-CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 3555679999864 3 35556669999999999775533 3369999753
No 107
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=87.66 E-value=0.11 Score=32.18 Aligned_cols=49 Identities=27% Similarity=0.421 Sum_probs=33.1
Q ss_pred CCccccccccccccCCCeeeecCCCCCcccHhhHHHHH----cCCCCccccccc
Q 043163 75 AKFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWL----GSHSSCPSCRQI 124 (172)
Q Consensus 75 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl----~~~~~CP~CR~~ 124 (172)
.....| ||-.....++..+....|..=||..|+..-- ..+..||.|+..
T Consensus 14 ~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 14 NWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp SSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred CcceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 344568 7988765555555555688889999976431 234579999754
No 108
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=87.48 E-value=1.2 Score=25.95 Aligned_cols=29 Identities=17% Similarity=0.312 Sum_probs=13.7
Q ss_pred eehHHHHHH-HHHHHHHHHHHHHHHHHhhc
Q 043163 4 VVILAALLC-ALICVLGLIAVARCAWLRRL 32 (172)
Q Consensus 4 ~ii~~~~l~-~li~vi~l~~~~r~~~~r~~ 32 (172)
++|++++++ .+++++.++.++++.+.+|.
T Consensus 13 wiIi~svl~GLllL~li~~~LwK~GFFkR~ 42 (54)
T 2knc_A 13 WWVLVGVLGGLLLLTILVLAMWKVGFFKRN 42 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcccCC
Confidence 344444443 44444444555566555543
No 109
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=87.34 E-value=0.71 Score=42.15 Aligned_cols=53 Identities=21% Similarity=0.124 Sum_probs=44.0
Q ss_pred CCCccccccccccccCCCeeeecCCCC-CcccHhhHHHHHcCCCCccccccccccccc
Q 043163 74 VAKFSDCAICLTEFVNGDEIRVLPQCG-HGFHVACIDTWLGSHSSCPSCRQILVVARC 130 (172)
Q Consensus 74 ~~~~~~C~ICL~~~~~~~~~~~l~~C~-H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~~ 130 (172)
...+..|||=++-+.+ +.+++ -| +.|-+..|.+|+..+.+||+=|.+|....+
T Consensus 888 iP~~F~cPIs~~lM~D---PVilp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~l 941 (968)
T 3m62_A 888 VPDEFLDPLMYTIMKD---PVILP-ASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDV 941 (968)
T ss_dssp SCGGGBCTTTCSBCSS---EEECT-TTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGC
T ss_pred CcHHhCCcchhhHHhC---CeEcC-CCCEEECHHHHHHHHhcCCCCCCCCCCCCcccc
Confidence 4666779999999866 55677 76 689999999999999999999998876544
No 110
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=85.19 E-value=0.18 Score=37.22 Aligned_cols=44 Identities=30% Similarity=0.635 Sum_probs=31.0
Q ss_pred ccccccccccccCCCeeeecCCCCCcccHhhHHHHHcC----CCCccccccc
Q 043163 77 FSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGS----HSSCPSCRQI 124 (172)
Q Consensus 77 ~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~ 124 (172)
+..|.+|.+. ++ +.....|...||..|+.+=+.. ...||.|+..
T Consensus 2 ~~~C~~C~~~---g~-ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP---GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC---SS-CCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC---Cc-eeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 3569999854 33 4455569999999999754432 3469999765
No 111
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.11 E-value=0.16 Score=32.00 Aligned_cols=44 Identities=23% Similarity=0.620 Sum_probs=30.1
Q ss_pred ccccccccccCCCeeeecCCCCCcccHhhHHHHHcC-----CCCcccccc
Q 043163 79 DCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGS-----HSSCPSCRQ 123 (172)
Q Consensus 79 ~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~-----~~~CP~CR~ 123 (172)
.|.||...-. +..+.....|...||..|+.+=|.. .-.||.|..
T Consensus 28 ~C~vC~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHE-PNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCC-STTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCC-CCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 6889986432 3345566679999999999853322 346888864
No 112
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=83.63 E-value=0.62 Score=31.02 Aligned_cols=47 Identities=21% Similarity=0.489 Sum_probs=34.1
Q ss_pred cccccccccccCCCeeeecC-CCCCcccHhhHHHH------H----cCCCCccccccc
Q 043163 78 SDCAICLTEFVNGDEIRVLP-QCGHGFHVACIDTW------L----GSHSSCPSCRQI 124 (172)
Q Consensus 78 ~~C~ICL~~~~~~~~~~~l~-~C~H~FH~~Ci~~W------l----~~~~~CP~CR~~ 124 (172)
..|.||...+.++...+..- .|..=||.+|+.-= + ..+..||.|+..
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~ 61 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKT 61 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCc
Confidence 46999999987766666664 58888999997521 1 034579999764
No 113
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=83.15 E-value=0.17 Score=31.21 Aligned_cols=44 Identities=32% Similarity=0.737 Sum_probs=29.0
Q ss_pred ccccccccccCCCeeeecCCCCCcccHhhHHHHHcC-----CCCcccccc
Q 043163 79 DCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGS-----HSSCPSCRQ 123 (172)
Q Consensus 79 ~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~-----~~~CP~CR~ 123 (172)
.|.||...- ++..+.....|...||..|+.+=|.. .-.||.|+.
T Consensus 20 ~C~~C~~~~-~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCS-CGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcC-CCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 466777542 23355566679999999999854332 346998864
No 114
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=82.71 E-value=1.3 Score=29.69 Aligned_cols=45 Identities=22% Similarity=0.501 Sum_probs=29.8
Q ss_pred CCCccccccccccccCCCeeeecC--CCCCcccHhhHHHHHcC----CCCccccccc
Q 043163 74 VAKFSDCAICLTEFVNGDEIRVLP--QCGHGFHVACIDTWLGS----HSSCPSCRQI 124 (172)
Q Consensus 74 ~~~~~~C~ICL~~~~~~~~~~~l~--~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~ 124 (172)
...+..|.+|.+ +..++... .|-..||..|+. |.. .-.||.|+..
T Consensus 12 ~~~~~~C~~C~~----~G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~ 62 (107)
T 4gne_A 12 QMHEDYCFQCGD----GGELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCD 62 (107)
T ss_dssp CSSCSSCTTTCC----CSEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCT
T ss_pred CCCCCCCCcCCC----CCcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCC
Confidence 345567999984 23455554 488999999997 433 2358877543
No 115
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=82.51 E-value=0.47 Score=31.18 Aligned_cols=44 Identities=20% Similarity=0.463 Sum_probs=30.2
Q ss_pred cccccccccccCCCeeeecCCCCCcccHhhHHHHHc---CCCCcccccc
Q 043163 78 SDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLG---SHSSCPSCRQ 123 (172)
Q Consensus 78 ~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~---~~~~CP~CR~ 123 (172)
..| ||-.....+ .++....|.--||..|+..=+. ....||.|+.
T Consensus 29 vrC-iC~~~~~~~-~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 29 TRC-ICGFTHDDG-YMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCC-TTSCCSCSS-CEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred EEe-ECCCccCCC-cEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 458 897766544 4455556999999999865222 2457999974
No 116
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=80.09 E-value=1.6 Score=28.02 Aligned_cols=52 Identities=23% Similarity=0.391 Sum_probs=35.1
Q ss_pred CccccccccccccCCCeeeecCCCCCcccHhhHHHHHc-------CCCCcccccccccc
Q 043163 76 KFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLG-------SHSSCPSCRQILVV 127 (172)
Q Consensus 76 ~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~-------~~~~CP~CR~~l~~ 127 (172)
+...|.+|...|..-..-.-...||++|+..|....+. ....|-.|-..|..
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~~ 66 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTR 66 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHHH
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHHh
Confidence 34579999999975443344446999999999765431 12458888666653
No 117
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=79.23 E-value=0.3 Score=30.74 Aligned_cols=44 Identities=32% Similarity=0.737 Sum_probs=29.2
Q ss_pred ccccccccccCCCeeeecCCCCCcccHhhHHHHHcC----C-CCcccccc
Q 043163 79 DCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGS----H-SSCPSCRQ 123 (172)
Q Consensus 79 ~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~----~-~~CP~CR~ 123 (172)
.|.||...- +.+.+.....|...||..|+.+-|.. . -.||.|+.
T Consensus 28 ~C~vC~~~~-d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCS-CGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCC-CCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 366676543 23455566679999999999865533 2 46999875
No 118
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=78.58 E-value=1.6 Score=27.63 Aligned_cols=51 Identities=18% Similarity=0.298 Sum_probs=33.0
Q ss_pred CccccccccccccCCCeeeecCCCCCcccHhhHHHHHc--------CCCCccccccccc
Q 043163 76 KFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLG--------SHSSCPSCRQILV 126 (172)
Q Consensus 76 ~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~--------~~~~CP~CR~~l~ 126 (172)
+...|.+|...|.--..-.-...||++|+..|....+. ....|-.|-..+.
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l~ 78 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRGITEPERVCDACYLALR 78 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCEEEETTTTEEEEEECCHHHHHHHH
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCCeEeccCCCCCCCCEECHHHHHHHh
Confidence 34579999999975443344446999999999765421 1234666655444
No 119
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=78.51 E-value=1.4 Score=30.20 Aligned_cols=35 Identities=23% Similarity=0.402 Sum_probs=25.3
Q ss_pred ccccccccccccCCCeeeecCCCCCcccHhhHHHH
Q 043163 77 FSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTW 111 (172)
Q Consensus 77 ~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~W 111 (172)
...|.+|...|..-..-.-...||++||..|....
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 34699999999654333444569999999996543
No 120
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=78.16 E-value=1.7 Score=26.74 Aligned_cols=33 Identities=21% Similarity=0.372 Sum_probs=24.2
Q ss_pred cccccccccccCCCeeeecCCCCCcccHhhHHH
Q 043163 78 SDCAICLTEFVNGDEIRVLPQCGHGFHVACIDT 110 (172)
Q Consensus 78 ~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~ 110 (172)
..|.+|...|..-..-.-...||++|+..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 479999999865433344446999999999653
No 121
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=77.92 E-value=0.99 Score=27.97 Aligned_cols=45 Identities=27% Similarity=0.559 Sum_probs=30.6
Q ss_pred cccccccccccCCCeeeecCCCCCcccHhhHHHH---------HcCCCCccccccc
Q 043163 78 SDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTW---------LGSHSSCPSCRQI 124 (172)
Q Consensus 78 ~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~W---------l~~~~~CP~CR~~ 124 (172)
..| ||...+..+ ..+....|..=||..|+..- ......||.|+..
T Consensus 17 ~~C-~C~~~~~~~-~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 17 LYC-ICRQPHNNR-FMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCS-TTCCCCCSS-CEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CEE-ECCCccCCC-CEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 457 898877533 44455569988999998521 1246789999754
No 122
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=77.67 E-value=1.7 Score=27.43 Aligned_cols=35 Identities=26% Similarity=0.473 Sum_probs=25.7
Q ss_pred ccccccccccccCCCeeeecCCCCCcccHhhHHHH
Q 043163 77 FSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTW 111 (172)
Q Consensus 77 ~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~W 111 (172)
...|.+|...|.--..-.-...||++|+..|....
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 34699999999754333444469999999997653
No 123
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=77.40 E-value=1.7 Score=27.97 Aligned_cols=50 Identities=18% Similarity=0.404 Sum_probs=33.4
Q ss_pred ccccccccccccCCCeeeecCCCCCcccHhhHHHHHc------CCCCccccccccc
Q 043163 77 FSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLG------SHSSCPSCRQILV 126 (172)
Q Consensus 77 ~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~------~~~~CP~CR~~l~ 126 (172)
...|.+|...|.--..-.....||++|+..|...++. ....|-.|-..|.
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~ 75 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETIS 75 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHHH
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHHH
Confidence 3469999999965433344456999999999776532 1234777755544
No 124
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=76.71 E-value=0.4 Score=32.83 Aligned_cols=47 Identities=19% Similarity=0.477 Sum_probs=31.5
Q ss_pred cccccccccccCCCeeeecCCCCCcccHhhHHHHHcCCCCccccccc
Q 043163 78 SDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQI 124 (172)
Q Consensus 78 ~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~ 124 (172)
..|..|-..|..-..-.....||.+|+..|....+.....|-.|-..
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~ 66 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRF 66 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHH
T ss_pred CcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHH
Confidence 46999999986533333444699999999977665556678888543
No 125
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=76.27 E-value=0.8 Score=27.95 Aligned_cols=47 Identities=21% Similarity=0.571 Sum_probs=31.0
Q ss_pred CCccccccccccccCCCeeeecCCCCCcccHhhHHHHH---cCCCCcccccc
Q 043163 75 AKFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWL---GSHSSCPSCRQ 123 (172)
Q Consensus 75 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl---~~~~~CP~CR~ 123 (172)
.+...| ||-..+. ++..+....|..=||..|+..-- .....||.|+.
T Consensus 17 ~~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 334568 9988765 44455555698889999986421 13456999864
No 126
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=75.82 E-value=0.55 Score=31.33 Aligned_cols=45 Identities=24% Similarity=0.579 Sum_probs=30.0
Q ss_pred ccccccccccCCCeeeecCCCCCcccHhhHHHHHcC----CCCccccccc
Q 043163 79 DCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGS----HSSCPSCRQI 124 (172)
Q Consensus 79 ~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~ 124 (172)
.|.+|...-.+ +.+.....|...||..|+.+=+.. ...||.|+.-
T Consensus 56 ~C~~C~~~~~~-~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGED-SKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCC-TTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCC-CCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 47777765332 345556679999999999864432 3469988543
No 127
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=75.64 E-value=2.1 Score=26.29 Aligned_cols=44 Identities=32% Similarity=0.662 Sum_probs=28.5
Q ss_pred CccccccccccccCCCeeeecCC--CC-CcccHhhHHHHHcC----CCCccccccc
Q 043163 76 KFSDCAICLTEFVNGDEIRVLPQ--CG-HGFHVACIDTWLGS----HSSCPSCRQI 124 (172)
Q Consensus 76 ~~~~C~ICL~~~~~~~~~~~l~~--C~-H~FH~~Ci~~Wl~~----~~~CP~CR~~ 124 (172)
+...| ||-.... + .++..-. |. .-||..|+. |.. +..||.|+..
T Consensus 15 ~~~~C-~C~~~~~-g-~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 15 EPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp SCCCS-TTCCCSC-S-SEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred CCCEE-ECCCCCC-C-CEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcc
Confidence 34558 8987642 3 3444545 55 589999987 332 4469999764
No 128
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.16 E-value=2 Score=27.17 Aligned_cols=34 Identities=26% Similarity=0.604 Sum_probs=24.2
Q ss_pred ccccccccccccCCCeeeecCCCCCcccHhhHHH
Q 043163 77 FSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDT 110 (172)
Q Consensus 77 ~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~ 110 (172)
...|.+|...|..-..-.-...||++|+..|...
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 3469999999965333333446999999999543
No 129
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=74.86 E-value=1.5 Score=24.20 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=9.5
Q ss_pred eehHHHHHHHHHHH-HHHHHHHHHH
Q 043163 4 VVILAALLCALICV-LGLIAVARCA 27 (172)
Q Consensus 4 ~ii~~~~l~~li~v-i~l~~~~r~~ 27 (172)
+++++.++..++++ +.++.++++.
T Consensus 11 wiIi~s~l~GLllL~li~~~LwK~G 35 (42)
T 2k1a_A 11 WWVLVGVLGGLLLLTILVLAMWKVG 35 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34444444443333 3333333333
No 130
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=74.66 E-value=2.9 Score=34.02 Aligned_cols=47 Identities=19% Similarity=0.349 Sum_probs=31.8
Q ss_pred cccccccccccCCCeeeecCCCCCc--ccHhhHHHHH--cCCCCcccccccccc
Q 043163 78 SDCAICLTEFVNGDEIRVLPQCGHG--FHVACIDTWL--GSHSSCPSCRQILVV 127 (172)
Q Consensus 78 ~~C~ICL~~~~~~~~~~~l~~C~H~--FH~~Ci~~Wl--~~~~~CP~CR~~l~~ 127 (172)
..|||=+..+.. .++-.. |.|+ |-..=+.... .....||+|...+..
T Consensus 250 L~CPlS~~ri~~--PvRg~~-C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~ 300 (371)
T 3i2d_A 250 LQCPISYTRMKY--PSKSIN-CKHLQCFDALWFLHSQLQIPTWQCPVCQIDIAL 300 (371)
T ss_dssp SBCTTTSSBCSS--EEEETT-CCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCG
T ss_pred ecCCCccccccc--cCcCCc-CCCcceECHHHHHHHhhcCCceeCCCCCcccCH
Confidence 469988888754 788887 9998 5533333322 235679999987743
No 131
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=74.55 E-value=1.3 Score=27.71 Aligned_cols=48 Identities=19% Similarity=0.289 Sum_probs=30.9
Q ss_pred CccccccccccccCCCeeeecC--CCCCcccHhhHHHHH---------cCCCCcccccccc
Q 043163 76 KFSDCAICLTEFVNGDEIRVLP--QCGHGFHVACIDTWL---------GSHSSCPSCRQIL 125 (172)
Q Consensus 76 ~~~~C~ICL~~~~~~~~~~~l~--~C~H~FH~~Ci~~Wl---------~~~~~CP~CR~~l 125 (172)
....| ||-.....+ ..+..- .|..=||..|+.--- ..+..||.|+..-
T Consensus 15 ~~~~C-iC~~~~~~g-~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 15 IKVRC-VCGNSLETD-SMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCC-SSCCCCCCS-CEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCEEe-ECCCcCCCC-CEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 33458 798874444 344444 588899999985321 2356799997643
No 132
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=73.95 E-value=4.6 Score=24.47 Aligned_cols=6 Identities=33% Similarity=0.650 Sum_probs=3.0
Q ss_pred CCCccc
Q 043163 99 CGHGFH 104 (172)
Q Consensus 99 C~H~FH 104 (172)
|.|.|.
T Consensus 59 C~hr~q 64 (70)
T 2klu_A 59 SPHRFQ 64 (70)
T ss_dssp CCCCCC
T ss_pred CcHHHh
Confidence 555544
No 133
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=73.71 E-value=2.1 Score=29.72 Aligned_cols=49 Identities=16% Similarity=0.308 Sum_probs=32.1
Q ss_pred CCcccccccccccc-CCCeeeecCCCCCcccHhhHHHHHcC----CCCcccccc
Q 043163 75 AKFSDCAICLTEFV-NGDEIRVLPQCGHGFHVACIDTWLGS----HSSCPSCRQ 123 (172)
Q Consensus 75 ~~~~~C~ICL~~~~-~~~~~~~l~~C~H~FH~~Ci~~Wl~~----~~~CP~CR~ 123 (172)
..+..|.+|...|. -...-+....|.|.+|..|-..-... .-.|=+|+.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLE 106 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHH
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHH
Confidence 35567999999994 33334556669999999995431111 123888865
No 134
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=73.49 E-value=4.2 Score=29.07 Aligned_cols=47 Identities=30% Similarity=0.612 Sum_probs=33.9
Q ss_pred CCCCccccccccccccCCCeeeecC--CCCCcccHhhHHHHHcC----------CCCcccccc
Q 043163 73 SVAKFSDCAICLTEFVNGDEIRVLP--QCGHGFHVACIDTWLGS----------HSSCPSCRQ 123 (172)
Q Consensus 73 ~~~~~~~C~ICL~~~~~~~~~~~l~--~C~H~FH~~Ci~~Wl~~----------~~~CP~CR~ 123 (172)
+...+..|.||-+ +..+.... .|...|+.+||..++.. .-+|=+|.-
T Consensus 75 eDG~~~yC~wC~~----Gg~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 75 DDGYQSYCTICCG----GREVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp TTSSBSSCTTTSC----CSEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred CCCCcceeeEecC----CCeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 3455677999986 34666666 69999999999998742 335877753
No 135
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=73.36 E-value=1.8 Score=28.06 Aligned_cols=45 Identities=31% Similarity=0.645 Sum_probs=28.6
Q ss_pred CCccccccccccccCCCeeeecCC--CC-CcccHhhHHHHHcC----CCCccccccc
Q 043163 75 AKFSDCAICLTEFVNGDEIRVLPQ--CG-HGFHVACIDTWLGS----HSSCPSCRQI 124 (172)
Q Consensus 75 ~~~~~C~ICL~~~~~~~~~~~l~~--C~-H~FH~~Ci~~Wl~~----~~~CP~CR~~ 124 (172)
.+...| ||..... + .++.... |. .-||..|+. |.. +..||.|+..
T Consensus 34 ~e~~yC-iC~~~~~-g-~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 34 NEPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CCCBCS-TTCCBCC-S-CCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCC
T ss_pred CCCcEE-ECCCCCC-C-CEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCc
Confidence 344557 9988653 3 3444444 54 579999987 322 4569999764
No 136
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=72.88 E-value=1.5 Score=25.99 Aligned_cols=42 Identities=33% Similarity=0.705 Sum_probs=27.2
Q ss_pred ccccccccccccCCCeeeecCC--CC-CcccHhhHHHHHcC----CCCcccccc
Q 043163 77 FSDCAICLTEFVNGDEIRVLPQ--CG-HGFHVACIDTWLGS----HSSCPSCRQ 123 (172)
Q Consensus 77 ~~~C~ICL~~~~~~~~~~~l~~--C~-H~FH~~Ci~~Wl~~----~~~CP~CR~ 123 (172)
...| ||..... + .++.... |. .-||..|+. |.. +..||.|+.
T Consensus 10 ~~~C-~C~~~~~-g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCEE-ECCCcCC-C-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 3457 8987642 3 4555555 44 679999987 332 346999964
No 137
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=72.81 E-value=3.5 Score=33.41 Aligned_cols=47 Identities=19% Similarity=0.299 Sum_probs=32.3
Q ss_pred cccccccccccCCCeeeecCCCCCc--ccHhhHHHHHc--CCCCcccccccccc
Q 043163 78 SDCAICLTEFVNGDEIRVLPQCGHG--FHVACIDTWLG--SHSSCPSCRQILVV 127 (172)
Q Consensus 78 ~~C~ICL~~~~~~~~~~~l~~C~H~--FH~~Ci~~Wl~--~~~~CP~CR~~l~~ 127 (172)
..|+|=+..++. .++-.. |.|. |-..=+..... ....||+|...+..
T Consensus 216 L~CPlS~~ri~~--P~Rg~~-C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~ 266 (360)
T 4fo9_A 216 LMCPLGKMRLTI--PCRAVT-CTHLQCFDAALYLQMNEKKPTWICPVCDKKAAY 266 (360)
T ss_dssp SBCTTTCSBCSS--EEEETT-CCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCG
T ss_pred eeCCCccceecc--CCcCCC-CCCCccCCHHHHHHHHhhCCCeECCCCCcccCH
Confidence 459988888754 788887 9998 65443333322 34679999988753
No 138
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=72.54 E-value=1.6 Score=25.76 Aligned_cols=42 Identities=36% Similarity=0.709 Sum_probs=27.8
Q ss_pred ccccccccccccCCCeeeecCC--CC-CcccHhhHHHHHcC----CCCcccccc
Q 043163 77 FSDCAICLTEFVNGDEIRVLPQ--CG-HGFHVACIDTWLGS----HSSCPSCRQ 123 (172)
Q Consensus 77 ~~~C~ICL~~~~~~~~~~~l~~--C~-H~FH~~Ci~~Wl~~----~~~CP~CR~ 123 (172)
...| ||-... .+ .++.... |. .-||..|+. |.. +..||.|+.
T Consensus 9 ~~yC-~C~~~~-~g-~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 9 PTYC-LCHQVS-YG-EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CEET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CcEE-ECCCCC-CC-CeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 3457 898864 23 4555556 65 689999987 332 346999964
No 139
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=72.39 E-value=1.9 Score=32.25 Aligned_cols=35 Identities=23% Similarity=0.375 Sum_probs=25.7
Q ss_pred ccccccccccccCCCeeeecCCCCCcccHhhHHHH
Q 043163 77 FSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTW 111 (172)
Q Consensus 77 ~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~W 111 (172)
...|.+|...|.--..-.-...||++||..|....
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 46899999999654333444569999999996543
No 140
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=72.04 E-value=3.9 Score=25.89 Aligned_cols=38 Identities=16% Similarity=0.290 Sum_probs=27.7
Q ss_pred ccccccccccccCCCeeeecCCCCCcccHhhHHHHHcC
Q 043163 77 FSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGS 114 (172)
Q Consensus 77 ~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~ 114 (172)
...|.+|.+.+++..-+.--..=.|.||.-|-...++.
T Consensus 15 ~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 15 PLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp SCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred eeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 45799999999876544322123699999999998864
No 141
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=70.70 E-value=0.54 Score=31.69 Aligned_cols=47 Identities=26% Similarity=0.658 Sum_probs=31.9
Q ss_pred ccccccccccCCCeeeecCCCCCcccHhhHHHHHcC----CCCccccccccc
Q 043163 79 DCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGS----HSSCPSCRQILV 126 (172)
Q Consensus 79 ~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~l~ 126 (172)
.|.||...-.. ..+.....|...||..|+.+=+.. .-.||.|+..+.
T Consensus 60 ~C~~C~~~~~~-~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~ 110 (114)
T 2kwj_A 60 SCILCGTSEND-DQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLK 110 (114)
T ss_dssp CCTTTTCCTTT-TTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHH
T ss_pred ccCcccccCCC-CceEEcCCCCccccccccCCCccCCCCCCeECccccchhh
Confidence 48888775433 345556669999999999854332 335999976544
No 142
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=70.25 E-value=2.4 Score=31.98 Aligned_cols=35 Identities=20% Similarity=0.414 Sum_probs=26.2
Q ss_pred ccccccccccccCCCeeeecCCCCCcccHhhHHHH
Q 043163 77 FSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTW 111 (172)
Q Consensus 77 ~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~W 111 (172)
...|.+|...|.--..-.-...||++||..|-...
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 35799999999754433445569999999997654
No 143
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=69.72 E-value=3.5 Score=24.53 Aligned_cols=40 Identities=28% Similarity=0.545 Sum_probs=27.8
Q ss_pred cccccccccccCCCeeeecCCCCCcccHhhHHHHHcCCCCcccccccccc
Q 043163 78 SDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILVV 127 (172)
Q Consensus 78 ~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 127 (172)
..|+-|-..+..++.+... -+..||.+| ..|-.|+.+|..
T Consensus 6 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~ 45 (72)
T 1wyh_A 6 SGCSACGETVMPGSRKLEY--GGQTWHEHC--------FLCSGCEQPLGS 45 (72)
T ss_dssp CBCSSSCCBCCSSSCEECS--TTCCEETTT--------CBCTTTCCBTTT
T ss_pred CCCccCCCccccCccEEEE--CccccCccc--------CeECCCCCcCCC
Confidence 3699999988764443322 578899888 457778777654
No 144
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=69.52 E-value=1.5 Score=27.08 Aligned_cols=46 Identities=20% Similarity=0.445 Sum_probs=31.4
Q ss_pred ccccccccccCCCeeeecCCCCCcccHhhHHHHHc-----CCCCcccccccc
Q 043163 79 DCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLG-----SHSSCPSCRQIL 125 (172)
Q Consensus 79 ~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~-----~~~~CP~CR~~l 125 (172)
.| ||-..+..+...+....|.-=||..|+.---. ....||.|+...
T Consensus 12 yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~ 62 (75)
T 3kqi_A 12 YC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTH 62 (75)
T ss_dssp ET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHH
T ss_pred EE-ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcccC
Confidence 35 88887754555556666988899999864211 345799997653
No 145
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=68.63 E-value=3.4 Score=25.05 Aligned_cols=39 Identities=23% Similarity=0.583 Sum_probs=29.4
Q ss_pred cccccccccccCCCeeeecCCCCCcccHhhHHHHHcCCCCcccccccccc
Q 043163 78 SDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILVV 127 (172)
Q Consensus 78 ~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 127 (172)
..|+.|-+.+..++.+.. -+..||.+| ..|-.|+..|..
T Consensus 10 ~~C~~C~~~I~~~~~v~a---~~~~~H~~C--------F~C~~C~~~L~~ 48 (76)
T 2cu8_A 10 SKCPKCDKTVYFAEKVSS---LGKDWHKFC--------LKCERCSKTLTP 48 (76)
T ss_dssp CBCTTTCCBCCTTTEEEE---TTEEEETTT--------CBCSSSCCBCCT
T ss_pred CCCcCCCCEeECCeEEEE---CCeEeeCCC--------CCCCCCCCccCC
Confidence 469999999886666543 578899888 458888877764
No 146
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=68.32 E-value=0.94 Score=22.76 Aligned_cols=14 Identities=21% Similarity=0.470 Sum_probs=10.1
Q ss_pred CCCccccccccccc
Q 043163 115 HSSCPSCRQILVVA 128 (172)
Q Consensus 115 ~~~CP~CR~~l~~~ 128 (172)
+..||+|+..+++.
T Consensus 3 k~~CpvCk~q~Pd~ 16 (28)
T 2jvx_A 3 DFCCPKCQYQAPDM 16 (28)
T ss_dssp CEECTTSSCEESSH
T ss_pred cccCccccccCcCh
Confidence 45689998877654
No 147
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=67.68 E-value=4 Score=24.35 Aligned_cols=40 Identities=28% Similarity=0.530 Sum_probs=27.8
Q ss_pred cccccccccccC--CCeeeecCCCCCcccHhhHHHHHcCCCCcccccccccc
Q 043163 78 SDCAICLTEFVN--GDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILVV 127 (172)
Q Consensus 78 ~~C~ICL~~~~~--~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 127 (172)
..|+-|-+.+.. ++.+... -+..||.+| ..|-.|+.+|..
T Consensus 6 ~~C~~C~~~I~~~~~~~~~~a--~~~~wH~~C--------F~C~~C~~~L~~ 47 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKYISF--EERQWHNDC--------FNCKKCSLSLVG 47 (72)
T ss_dssp CSBTTTTBCCCCSSSCSCEEC--SSCEECTTT--------CBCSSSCCBCTT
T ss_pred CCCcCCCccccCCCCcceEEE--CCcccCccc--------CEeccCCCcCCC
Confidence 469999998875 3333222 678899888 468888887763
No 148
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=67.47 E-value=0.83 Score=27.77 Aligned_cols=44 Identities=25% Similarity=0.454 Sum_probs=26.7
Q ss_pred cccccccccccCCCeeeecC--CCCCcccHhhHHHH--------HcCCCCcccccc
Q 043163 78 SDCAICLTEFVNGDEIRVLP--QCGHGFHVACIDTW--------LGSHSSCPSCRQ 123 (172)
Q Consensus 78 ~~C~ICL~~~~~~~~~~~l~--~C~H~FH~~Ci~~W--------l~~~~~CP~CR~ 123 (172)
..| ||-.....+.. +..- .|..=||..|+.-- +..+..||.||.
T Consensus 11 v~C-~C~~~~~~g~m-I~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 11 VRC-ICSSTMVNDSM-IQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp ECC-TTCCCSCCSCE-EECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred EEe-ECCCCcCCCCE-EEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 457 79766554443 3342 38777999997321 012456999974
No 149
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=67.08 E-value=3.7 Score=29.18 Aligned_cols=49 Identities=18% Similarity=0.289 Sum_probs=32.2
Q ss_pred CCccccccccccccCC-CeeeecCCCCCcccHhhHHHHHcCC--CCccccccc
Q 043163 75 AKFSDCAICLTEFVNG-DEIRVLPQCGHGFHVACIDTWLGSH--SSCPSCRQI 124 (172)
Q Consensus 75 ~~~~~C~ICL~~~~~~-~~~~~l~~C~H~FH~~Ci~~Wl~~~--~~CP~CR~~ 124 (172)
..+..|++|...|.-- ..-.....|+|.+|..|- .|.... -.|-+|+..
T Consensus 66 ~~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 66 LNETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSSSSSCEEHHHHHH
T ss_pred CCCccchhhcCccccccCCCCcCCCCCchhhcccc-cccCCCCcEeeHHHHHH
Confidence 3567899999987532 233445569999999996 243332 248888653
No 150
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=66.61 E-value=2.8 Score=25.45 Aligned_cols=25 Identities=24% Similarity=0.634 Sum_probs=12.8
Q ss_pred cccccccccCCCeeeecCCCCCcccHhh
Q 043163 80 CAICLTEFVNGDEIRVLPQCGHGFHVAC 107 (172)
Q Consensus 80 C~ICL~~~~~~~~~~~l~~C~H~FH~~C 107 (172)
|+-|-+.+..++.+.. -+..||.+|
T Consensus 3 C~~C~~~I~~~~~v~a---~~~~~H~~C 27 (76)
T 1iml_A 3 CPKCDKEVYFAERVTS---LGKDWHRPC 27 (76)
T ss_dssp CTTTSSBCCGGGEEEE---TTEEEETTT
T ss_pred CCCCCCEEECceEEEE---CCccccCCC
Confidence 5666665554443332 245566655
No 151
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=66.53 E-value=23 Score=22.75 Aligned_cols=49 Identities=22% Similarity=0.459 Sum_probs=35.1
Q ss_pred cccccccccccC---CCeeeecCCCCCcccHhhHHHHHc-CCCCccccccccc
Q 043163 78 SDCAICLTEFVN---GDEIRVLPQCGHGFHVACIDTWLG-SHSSCPSCRQILV 126 (172)
Q Consensus 78 ~~C~ICL~~~~~---~~~~~~l~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~l~ 126 (172)
..|.||=+++.- ++.....-.|+--.|+.|++-=.+ .+..||-|+...-
T Consensus 17 qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 17 QFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp CBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 469999998643 333333335777799999886554 4778999988776
No 152
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=66.36 E-value=1.6 Score=33.20 Aligned_cols=44 Identities=32% Similarity=0.737 Sum_probs=27.4
Q ss_pred ccccccccccCCCeeeecCCCCCcccHhhHHHHHcC-----CCCcccccc
Q 043163 79 DCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGS-----HSSCPSCRQ 123 (172)
Q Consensus 79 ~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~-----~~~CP~CR~ 123 (172)
.|.+|...- ++..+.....|...||..|+.+=|.. .-.||.|+.
T Consensus 176 ~C~vC~~~~-~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCC-C--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCC-CCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 588887642 23345566679999999999854432 346999965
No 153
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=65.77 E-value=1.2 Score=29.73 Aligned_cols=25 Identities=28% Similarity=0.717 Sum_probs=17.1
Q ss_pred CCCCcccHhhHHHHHcCCCCcccccccccc
Q 043163 98 QCGHGFHVACIDTWLGSHSSCPSCRQILVV 127 (172)
Q Consensus 98 ~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 127 (172)
.||+.|. .=+.....||.|++.-++
T Consensus 72 ~CG~~F~-----~~~~kPsrCP~CkSe~Ie 96 (105)
T 2gmg_A 72 KCGFVFK-----AEINIPSRCPKCKSEWIE 96 (105)
T ss_dssp TTCCBCC-----CCSSCCSSCSSSCCCCBC
T ss_pred hCcCeec-----ccCCCCCCCcCCCCCccC
Confidence 5999991 112345679999987664
No 154
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=64.82 E-value=4.9 Score=23.91 Aligned_cols=39 Identities=33% Similarity=0.593 Sum_probs=24.3
Q ss_pred cccccccccccCCCeeeecCCCCCcccHhhHHHHHcCCCCccccccccc
Q 043163 78 SDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILV 126 (172)
Q Consensus 78 ~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 126 (172)
..|+.|-+.+...+.+... =+..||.+| ..|-.|+..|.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~ 44 (72)
T 1x61_A 6 SGCGGCGEDVVGDGAGVVA--LDRVFHVGC--------FVCSTCRAQLR 44 (72)
T ss_dssp CCCSSSCSCCCSSSCCEEC--SSSEECTTT--------CBCSSSCCBCT
T ss_pred CCCccCCCccCCCceEEEE--CCCeEcccC--------CcccccCCcCC
Confidence 3588888877653322222 467788777 34777777664
No 155
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=64.70 E-value=3.8 Score=24.40 Aligned_cols=39 Identities=23% Similarity=0.540 Sum_probs=26.8
Q ss_pred ccccccccccCCCeeeecCCCCCcccHhhHHHHHcCCCCcccccccccc
Q 043163 79 DCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILVV 127 (172)
Q Consensus 79 ~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 127 (172)
.|+.|-+.+...+.+... -+..||.+| ..|-.|+..|..
T Consensus 7 ~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~ 45 (72)
T 1x4k_A 7 GCQECKKTIMPGTRKMEY--KGSSWHETC--------FICHRCQQPIGT 45 (72)
T ss_dssp CBSSSCCCCCSSSCEEEE--TTEEEETTT--------TCCSSSCCCCCS
T ss_pred CCccCCCcccCCceEEEE--CcCeecccC--------CcccccCCccCC
Confidence 599999988765433332 567899888 347777776653
No 156
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=64.63 E-value=4.8 Score=24.84 Aligned_cols=39 Identities=33% Similarity=0.698 Sum_probs=28.8
Q ss_pred ccccccccccccCCCeeeecCCCCCcccHhhHHHHHcCCCCccccccccc
Q 043163 77 FSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILV 126 (172)
Q Consensus 77 ~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 126 (172)
...|+-|-..+..++.+.. -+..||.+| ..|-.|+..|.
T Consensus 15 ~~~C~~C~~~I~~~~~v~a---~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLLA---LDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp CSCCTTTCCCCSSSCCEEE---TTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCcCcCCeeCCCeEEEE---CCccccccc--------CCcCcCCCCcC
Confidence 3469999998876665544 467899888 45788877775
No 157
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=63.87 E-value=5.3 Score=24.41 Aligned_cols=40 Identities=28% Similarity=0.682 Sum_probs=28.8
Q ss_pred cccccccccccCCCeeeecCCCCCcccHhhHHHHHcCCCCcccccccccc
Q 043163 78 SDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILVV 127 (172)
Q Consensus 78 ~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 127 (172)
..|+.|-..+..++.++.. =+..||.+| ..|-.|+..|..
T Consensus 16 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~ 55 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNVEY--KGTVWHKDC--------FTCSNCKQVIGT 55 (82)
T ss_dssp CBCSSSCCBCCSSSCEEEC--SSCEEETTT--------CCCSSSCCCCTT
T ss_pred CcCccCCcccccCceEEEE--Ccccccccc--------CchhhCCCccCC
Confidence 4699999998766554332 578899888 457778777764
No 158
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=63.63 E-value=3.8 Score=24.28 Aligned_cols=42 Identities=29% Similarity=0.611 Sum_probs=29.0
Q ss_pred cccccccccccCCCeeeecCCCCCcccHhhHHHHHcC-CCCcccc
Q 043163 78 SDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGS-HSSCPSC 121 (172)
Q Consensus 78 ~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~-~~~CP~C 121 (172)
..|--|...+.+. .....+.|++.|+.+|= .++.. =.+||-|
T Consensus 16 ~~C~~C~~~~~~~-~~y~C~~C~~~FC~dCD-~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQ-HVYVCAVCQNVFCVDCD-VFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTS-EEECCTTTTCCBCHHHH-HTTTTTSCSSSTT
T ss_pred CcccccCcccCCC-ccEECCccCcCcccchh-HHHHhhccCCcCC
Confidence 3599999998532 33567789999999993 33322 3468877
No 159
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=63.04 E-value=3.4 Score=24.60 Aligned_cols=44 Identities=27% Similarity=0.584 Sum_probs=27.4
Q ss_pred ccccccccccccCCCeeeecCC--CC-CcccHhhHHHHH--cCCCCcccccc
Q 043163 77 FSDCAICLTEFVNGDEIRVLPQ--CG-HGFHVACIDTWL--GSHSSCPSCRQ 123 (172)
Q Consensus 77 ~~~C~ICL~~~~~~~~~~~l~~--C~-H~FH~~Ci~~Wl--~~~~~CP~CR~ 123 (172)
...| ||-... .+ .++.... |. .-||..|+..=- ..+..||.|+.
T Consensus 11 ~~yC-~C~~~~-~g-~MI~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 11 PTYC-LCNQVS-YG-EMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CEET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHT
T ss_pred CcEE-ECCCCC-CC-CeeeeeCCCCCcccEecccCCcCcCCCCCEECcCccc
Confidence 3457 898863 23 4555555 44 789999987210 12456999964
No 160
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=62.91 E-value=3.7 Score=24.27 Aligned_cols=41 Identities=24% Similarity=0.547 Sum_probs=30.5
Q ss_pred cccccccccccCCCeeeecCCCCCcccHhhHHHHHcCCCCccccccccccc
Q 043163 78 SDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILVVA 128 (172)
Q Consensus 78 ~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 128 (172)
..|+-|-..+..++.+... =+..||.+|+ .|-.|..+|...
T Consensus 12 ~~C~~C~~~i~~~e~~~~~--~~~~~H~~CF--------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 12 ATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPEG 52 (72)
T ss_dssp CBCTTTCCBCCTTCEEEEE--TTEEEETTTS--------SCTTTCCCCGGG
T ss_pred ccchhcCccccCCceEEEe--CcCeeCcCCC--------cccCCCCCCCCC
Confidence 4699999998876655432 5678999885 588888887653
No 161
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=62.86 E-value=16 Score=24.21 Aligned_cols=55 Identities=13% Similarity=0.126 Sum_probs=38.1
Q ss_pred cccccccccccC-CCeeeecCCCCCcccHhhHHHHHcCCCCcccccccccccccccCC
Q 043163 78 SDCAICLTEFVN-GDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILVVARCQKCG 134 (172)
Q Consensus 78 ~~C~ICL~~~~~-~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~~~~~~ 134 (172)
..|..|-..+.+ +... ... =+..||..|...-+..+..|-.|...|....+...+
T Consensus 33 F~C~~C~~~L~~~~~~~-~~~-~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~~~~~~g 88 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSS-YTK-SGMILCRNDYIRLFGNSGAGGSGGHMGSGGDVMVVG 88 (122)
T ss_dssp HCCSSSCCCTTTSEECC-EEE-TTEEECHHHHHHHHCCCCSSSCSSCCSCCEESSSSS
T ss_pred CCcCCCCCcccccCCeE-EEE-CCeeecHHHHHHHcCCCCccccCCCCcCchheEEcC
Confidence 468888887753 1222 222 577899999988776666899999998876554433
No 162
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=62.65 E-value=3.5 Score=22.16 Aligned_cols=11 Identities=0% Similarity=0.347 Sum_probs=4.5
Q ss_pred hHHHHHHHHHH
Q 043163 6 ILAALLCALIC 16 (172)
Q Consensus 6 i~~~~l~~li~ 16 (172)
+.+.++..+++
T Consensus 15 I~~~vv~Gv~l 25 (41)
T 2k9y_A 15 VIGGVAVGVVL 25 (41)
T ss_dssp HHHHHHHHHHH
T ss_pred EEeehhHHHHH
Confidence 33444444443
No 163
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=61.66 E-value=1.8 Score=24.66 Aligned_cols=41 Identities=22% Similarity=0.563 Sum_probs=26.4
Q ss_pred cccccccCCCeeeecCCCCCcccHhhHHHHH---cCCCCcccccc
Q 043163 82 ICLTEFVNGDEIRVLPQCGHGFHVACIDTWL---GSHSSCPSCRQ 123 (172)
Q Consensus 82 ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl---~~~~~CP~CR~ 123 (172)
||-.... +...+....|+.=||..|+.--- ..+..||.|+.
T Consensus 8 ~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCT-TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCC-CCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 6766554 33444555688889999976321 23557999865
No 164
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=61.00 E-value=7.7 Score=31.74 Aligned_cols=46 Identities=24% Similarity=0.577 Sum_probs=33.2
Q ss_pred CCCccccccccccccCCCeeeecC--CCCCcccHhhHHHHHc----------CCCCcccccc
Q 043163 74 VAKFSDCAICLTEFVNGDEIRVLP--QCGHGFHVACIDTWLG----------SHSSCPSCRQ 123 (172)
Q Consensus 74 ~~~~~~C~ICL~~~~~~~~~~~l~--~C~H~FH~~Ci~~Wl~----------~~~~CP~CR~ 123 (172)
...+..|.+|-+. ..+.... .|...||.+||..++. ..-+|=+|.-
T Consensus 90 DG~~~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 90 DGYQSYCSICCSG----ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp SSSBCSCTTTCCC----SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CCCcccceEcCCC----CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 4556678888763 3566666 6999999999999972 2446877754
No 165
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.18 E-value=5 Score=24.19 Aligned_cols=40 Identities=25% Similarity=0.525 Sum_probs=28.2
Q ss_pred cccccccccccCCCeeeecCCCCCcccHhhHHHHHcCCCCcccccccccc
Q 043163 78 SDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILVV 127 (172)
Q Consensus 78 ~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 127 (172)
..|+-|-+.+...+.+... -+..||.+| ..|-.|+.+|..
T Consensus 12 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~ 51 (77)
T 1g47_A 12 ATCERCKGGFAPAEKIVNS--NGELYHEQC--------FVCAQCFQQFPE 51 (77)
T ss_dssp CBCSSSCCBCCSTTTCEEE--TTEEECTTT--------CCCTTTCCCCGG
T ss_pred CCchhcCCccCCCceEEEe--CccEecccc--------CeECCCCCCCCC
Confidence 4699999988754444322 567899888 457778777764
No 166
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=59.96 E-value=6.5 Score=23.80 Aligned_cols=32 Identities=22% Similarity=0.543 Sum_probs=24.8
Q ss_pred CCccccccccccccCCCeeeecCCC-CCcccHhhHHHH
Q 043163 75 AKFSDCAICLTEFVNGDEIRVLPQC-GHGFHVACIDTW 111 (172)
Q Consensus 75 ~~~~~C~ICL~~~~~~~~~~~l~~C-~H~FH~~Ci~~W 111 (172)
.+..-|.||.++- .++-+. | +-+||..|..+-
T Consensus 6 ee~pWC~ICneDA----tlrC~g-CdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 6 SGLPWCCICNEDA----TLRCAG-CDGDLYCARCFREG 38 (67)
T ss_dssp CCCSSCTTTCSCC----CEEETT-TTSEEECSSHHHHH
T ss_pred cCCCeeEEeCCCC----eEEecC-CCCceehHHHHHHH
Confidence 3445699999974 577776 9 789999998874
No 167
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=59.21 E-value=6.3 Score=23.79 Aligned_cols=39 Identities=26% Similarity=0.605 Sum_probs=26.4
Q ss_pred cccccccccccC--CCeeeecCCCCCcccHhhHHHHHcCCCCccccccccc
Q 043163 78 SDCAICLTEFVN--GDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILV 126 (172)
Q Consensus 78 ~~C~ICL~~~~~--~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 126 (172)
..|+-|-..+.. +...+.. -+..||.+| ..|-.|+.+|.
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a--~~~~wH~~C--------F~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICF--QDSQWHSEC--------FNCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEE--TTEEEEGGG--------CBCTTTCCBCS
T ss_pred CCCccCCCcccCCCCceeEEE--CCcccCccc--------CChhhCCCcCC
Confidence 359999998874 2233222 578899998 45777777665
No 168
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=58.45 E-value=3.6 Score=27.02 Aligned_cols=11 Identities=27% Similarity=0.966 Sum_probs=10.2
Q ss_pred ccHhhHHHHHc
Q 043163 103 FHVACIDTWLG 113 (172)
Q Consensus 103 FH~~Ci~~Wl~ 113 (172)
||..|+..|++
T Consensus 43 FCRNCLskWy~ 53 (105)
T 2o35_A 43 FCRNCLSNWYR 53 (105)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999985
No 169
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=58.00 E-value=3.7 Score=26.91 Aligned_cols=11 Identities=36% Similarity=0.975 Sum_probs=10.2
Q ss_pred ccHhhHHHHHc
Q 043163 103 FHVACIDTWLG 113 (172)
Q Consensus 103 FH~~Ci~~Wl~ 113 (172)
||..|+..|+.
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999985
No 170
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=57.70 E-value=2.2 Score=34.92 Aligned_cols=49 Identities=18% Similarity=0.248 Sum_probs=0.0
Q ss_pred ccccccccccccCCCeeeecCCCCCcccHhhHHHHHcC-------CCCcccccccc
Q 043163 77 FSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGS-------HSSCPSCRQIL 125 (172)
Q Consensus 77 ~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~-------~~~CP~CR~~l 125 (172)
...|.+|-..|.--..-..+..||++||..|-..++.. ...|-.|-..+
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp --------------------------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 45699999988643333334469999999998766421 23477775544
No 171
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=55.47 E-value=5.9 Score=26.50 Aligned_cols=28 Identities=18% Similarity=0.347 Sum_probs=15.1
Q ss_pred ccccccccccCCCeeeecCCCCCcccHhhH
Q 043163 79 DCAICLTEFVNGDEIRVLPQCGHGFHVACI 108 (172)
Q Consensus 79 ~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci 108 (172)
.|+-|-..+...+.+... -++.||.+|+
T Consensus 10 ~C~~C~~~I~~~e~~~~a--~~~~~H~~CF 37 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMRV--KDKVYHLECF 37 (123)
T ss_dssp CCSSSSCCCCTTCCCCCC--SSCCCCTTTC
T ss_pred cccCCCCeecCCceEEEE--CCcccccccC
Confidence 477777766543333211 3566666663
No 172
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=54.12 E-value=25 Score=21.19 Aligned_cols=17 Identities=18% Similarity=0.571 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 043163 8 AALLCALICVLGLIAVA 24 (172)
Q Consensus 8 ~~~l~~li~vi~l~~~~ 24 (172)
..++.+++|++++++++
T Consensus 21 GLifA~vLfi~GI~iil 37 (67)
T 2jp3_A 21 GLIFGGLLCIAGIALAL 37 (67)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHH
Confidence 34444555666665554
No 173
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=53.20 E-value=4 Score=20.58 Aligned_cols=28 Identities=21% Similarity=0.473 Sum_probs=19.4
Q ss_pred cccccccccccCCCeeeecCCCCCcccHhhH
Q 043163 78 SDCAICLTEFVNGDEIRVLPQCGHGFHVACI 108 (172)
Q Consensus 78 ~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci 108 (172)
+.|+.|-..+-..+.+.. =|..||..|+
T Consensus 4 ~~C~~C~k~Vy~~Ek~~~---~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVNC---LDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCCS---SSSCCCGGGC
T ss_pred CcCCccCCEEecceeEEE---CCeEecccCC
Confidence 369999887655444432 5788999884
No 174
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=52.25 E-value=3.9 Score=34.53 Aligned_cols=49 Identities=18% Similarity=0.383 Sum_probs=33.1
Q ss_pred CccccccccccccCCCeeeecCCCCCcccHhhHHHHHc-----CCCCcccccccc
Q 043163 76 KFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLG-----SHSSCPSCRQIL 125 (172)
Q Consensus 76 ~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~-----~~~~CP~CR~~l 125 (172)
....| ||-..+..+...+.+..|.-=||..|+.---. .+..||.|+...
T Consensus 36 ~~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 89 (488)
T 3kv5_D 36 PPVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLH 89 (488)
T ss_dssp CCEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHH
T ss_pred CCeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCCc
Confidence 33457 99888764555666667998899999853211 235699998643
No 175
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.85 E-value=9.3 Score=23.51 Aligned_cols=39 Identities=31% Similarity=0.606 Sum_probs=28.7
Q ss_pred cccccccccccCCCeeeecCCCCCcccHhhHHHHHcCCCCcccccccccc
Q 043163 78 SDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILVV 127 (172)
Q Consensus 78 ~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 127 (172)
..|+-|-..+...+.+.. -+..||.+| ..|-.|+..|..
T Consensus 16 ~~C~~C~~~I~~~e~v~a---~~~~wH~~C--------F~C~~C~~~L~~ 54 (82)
T 2co8_A 16 DLCALCGEHLYVLERLCV---NGHFFHRSC--------FRCHTCEATLWP 54 (82)
T ss_dssp CBCSSSCCBCCTTTBCCB---TTBCCBTTT--------CBCSSSCCBCCT
T ss_pred CCCcccCCCcccceEEEE---CCCeeCCCc--------CEEcCCCCCcCC
Confidence 469999998866555542 577899998 457788777764
No 176
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.65 E-value=19 Score=22.44 Aligned_cols=39 Identities=21% Similarity=0.534 Sum_probs=25.9
Q ss_pred ccccccccccccCCCeeeecCCCCCcccHhhHHHHHcCCCCccccccccc
Q 043163 77 FSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILV 126 (172)
Q Consensus 77 ~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 126 (172)
...|+-|-+.+...+.+. . -+..||.+|+ .|-.|...|.
T Consensus 15 ~~~C~~C~~~I~~~~~v~--a-~~~~~H~~CF--------~C~~C~~~L~ 53 (91)
T 2d8y_A 15 RETCVECQKTVYPMERLL--A-NQQVFHISCF--------RCSYCNNKLS 53 (91)
T ss_dssp SCBCTTTCCBCCTTSEEE--C-SSSEEETTTC--------BCTTTCCBCC
T ss_pred CCcCccCCCccCCceeEE--E-CCCEECCCCC--------eeCCCCCCCC
Confidence 346999999887666543 2 6788998884 3555555544
No 177
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=51.07 E-value=6.3 Score=24.09 Aligned_cols=38 Identities=29% Similarity=0.714 Sum_probs=25.4
Q ss_pred cccccccccccCCCeeeecCCCCCcccHhhHHHHHcCCCCccccccccc
Q 043163 78 SDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILV 126 (172)
Q Consensus 78 ~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 126 (172)
..|+.|-+.+..++.+.. -+..||.+|+ .|-.|+.+|.
T Consensus 8 ~~C~~C~~~I~~~~~~~a---~~~~~H~~CF--------~C~~C~~~L~ 45 (81)
T 1a7i_A 8 NKCGACGRTVYHAEEVQC---DGRSFHRCCF--------LCMVCRKNLD 45 (81)
T ss_dssp CBCSSSCCBCSSTTEEEE---TTEEEESSSE--------ECSSSCCEEC
T ss_pred CcCcCcCccccCceeEEe---CCcccccccC--------ccCCCCCCCC
Confidence 469999998876665433 5678888873 3555555554
No 178
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=49.74 E-value=6.6 Score=27.10 Aligned_cols=27 Identities=30% Similarity=0.807 Sum_probs=17.3
Q ss_pred ccccccccccccCCC-eeeecCCCCCcc
Q 043163 77 FSDCAICLTEFVNGD-EIRVLPQCGHGF 103 (172)
Q Consensus 77 ~~~C~ICL~~~~~~~-~~~~l~~C~H~F 103 (172)
-..||-|-.+|.-.+ .+.+.|.|+|-|
T Consensus 27 lP~CP~C~seytYeDg~l~vCPeC~hEW 54 (138)
T 2akl_A 27 LPPCPQCNSEYTYEDGALLVCPECAHEW 54 (138)
T ss_dssp SCCCTTTCCCCCEECSSSEEETTTTEEE
T ss_pred CCCCCCCCCcceEecCCeEECCcccccc
Confidence 356999999886433 445555566654
No 179
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.00 E-value=12 Score=22.80 Aligned_cols=39 Identities=23% Similarity=0.445 Sum_probs=26.6
Q ss_pred ccccccccccCCCeeeecCCCCCcccHhhHHHHHcCCCCcccccccccc
Q 043163 79 DCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILVV 127 (172)
Q Consensus 79 ~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 127 (172)
.|+-|-..+..++.+... =+..||.+| ..|-.|+.+|..
T Consensus 17 ~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~ 55 (82)
T 2ehe_A 17 TCAECQQLIGHDSRELFY--EDRHFHEGC--------FRCCRCQRSLAD 55 (82)
T ss_dssp BCTTTCCBCCSSCCBCCC--SSCCCBTTT--------SBCTTTCCBCSS
T ss_pred cCccCCCccccCcEEEEe--CCccccccC--------CeecCCCCccCC
Confidence 699999988743333221 478899888 457778777663
No 180
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=47.88 E-value=5.3 Score=25.72 Aligned_cols=46 Identities=17% Similarity=0.377 Sum_probs=27.7
Q ss_pred CCccccccccccccCCCeeeecCCCC---CcccHhhHHHHH--cCCCCccc-ccc
Q 043163 75 AKFSDCAICLTEFVNGDEIRVLPQCG---HGFHVACIDTWL--GSHSSCPS-CRQ 123 (172)
Q Consensus 75 ~~~~~C~ICL~~~~~~~~~~~l~~C~---H~FH~~Ci~~Wl--~~~~~CP~-CR~ 123 (172)
.+...| ||-.... ++ ++....|. .-||..|+..=- ..+..||. |+.
T Consensus 24 ~~~~yC-iC~~~~~-g~-MI~CD~c~C~~eWfH~~CVgl~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 24 QEEVYC-FCRNVSY-GP-MVACDNPACPFEWFHYGCVGLKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CCSCCS-TTTCCCS-SS-EECCCSSSCSCSCEETTTSSCSSCTTSCCCSSHHHHH
T ss_pred CCCcEE-EeCCCCC-CC-EEEecCCCCccccCcCccCCCCcCCCCCccCChhhcc
Confidence 344568 9987532 33 44444554 579999986210 12456999 974
No 181
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=47.54 E-value=8.4 Score=24.32 Aligned_cols=46 Identities=26% Similarity=0.677 Sum_probs=25.9
Q ss_pred cccccccccccCCCeeeecCCCCCcccHhhHHHHHcCCCCcccccccccccccccCC
Q 043163 78 SDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILVVARCQKCG 134 (172)
Q Consensus 78 ~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~~~~~~ 134 (172)
..||.|-.++..+........|+- . +.....||-|.++|.+ +..||
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~~C~~--------~-~~~~afCPeCgq~Le~--lkACG 48 (81)
T 2jrp_A 3 ITCPVCHHALERNGDTAHCETCAK--------D-FSLQALCPDCRQPLQV--LKACG 48 (81)
T ss_dssp CCCSSSCSCCEECSSEEECTTTCC--------E-EEEEEECSSSCSCCCE--EEETT
T ss_pred CCCCCCCCccccCCCceECccccc--------c-CCCcccCcchhhHHHH--HHhcC
Confidence 468888887755433333333332 2 2233368888877765 56665
No 182
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.29 E-value=11 Score=22.77 Aligned_cols=38 Identities=24% Similarity=0.356 Sum_probs=26.7
Q ss_pred cccccccccccCCCeeeecCCCCCcccHhhHHHHHcCCCCcccccccccc
Q 043163 78 SDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILVV 127 (172)
Q Consensus 78 ~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 127 (172)
..|+-|-+.+.. +.+ .- -+..||.+|+ .|-.|+..|..
T Consensus 16 ~~C~~C~~~I~~-~~~--~a-~~~~~H~~CF--------~C~~C~~~L~~ 53 (79)
T 1x62_A 16 PMCDKCGTGIVG-VFV--KL-RDRHRHPECY--------VCTDCGTNLKQ 53 (79)
T ss_dssp CCCSSSCCCCCS-SCE--EC-SSCEECTTTT--------SCSSSCCCHHH
T ss_pred CccccCCCCccC-cEE--EE-CcceeCcCcC--------eeCCCCCCCCC
Confidence 469999998865 222 22 6789999884 57778777653
No 183
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=45.87 E-value=12 Score=26.82 Aligned_cols=26 Identities=23% Similarity=0.522 Sum_probs=17.1
Q ss_pred eeeecCCCCCcccHhhHHHHHcCCCCccccccc
Q 043163 92 EIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQI 124 (172)
Q Consensus 92 ~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~ 124 (172)
...+++.|||++-. .....||+|..+
T Consensus 137 ~~~~C~~CG~i~~~-------~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 137 KVYICPICGYTAVD-------EAPEYCPVCGAP 162 (170)
T ss_dssp CEEECTTTCCEEES-------CCCSBCTTTCCB
T ss_pred CeeEeCCCCCeeCC-------CCCCCCCCCCCC
Confidence 34556669998762 234589999753
No 184
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=45.52 E-value=5.3 Score=20.87 Aligned_cols=11 Identities=36% Similarity=0.754 Sum_probs=7.2
Q ss_pred CCccccccccc
Q 043163 116 SSCPSCRQILV 126 (172)
Q Consensus 116 ~~CP~CR~~l~ 126 (172)
..||+|...+.
T Consensus 6 FiCP~C~~~l~ 16 (34)
T 3mjh_B 6 FICPQCMKSLG 16 (34)
T ss_dssp EECTTTCCEES
T ss_pred cCCcHHHHHcC
Confidence 35777776655
No 185
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=45.05 E-value=20 Score=22.20 Aligned_cols=39 Identities=21% Similarity=0.365 Sum_probs=27.1
Q ss_pred ccccccccccccCCCeeeecCCCCCcccHhhHHHHHcCCCCcccccccccc
Q 043163 77 FSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILVV 127 (172)
Q Consensus 77 ~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 127 (172)
...|+-|-+.+.. +.+ .- -+..||.+| ..|-.|+..|..
T Consensus 25 ~~~C~~C~~~I~~-~~~--~a-~~~~~H~~C--------F~C~~C~~~L~~ 63 (89)
T 1x64_A 25 MPLCDKCGSGIVG-AVV--KA-RDKYRHPEC--------FVCADCNLNLKQ 63 (89)
T ss_dssp CCBCTTTCCBCCS-CCE--ES-SSCEECTTT--------CCCSSSCCCTTT
T ss_pred CCCcccCCCEecc-cEE--EE-CCceECccC--------CEecCCCCCCCC
Confidence 3469999998864 222 22 678999988 457778777764
No 186
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.52 E-value=14 Score=21.57 Aligned_cols=37 Identities=24% Similarity=0.579 Sum_probs=25.5
Q ss_pred cccccccccccCCCeeeecCCCCCcccHhhHHHHHcCCCCccccccccc
Q 043163 78 SDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILV 126 (172)
Q Consensus 78 ~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 126 (172)
..|+-|-..+.. +.+ .. -+..||.+| ..|-.|+.+|.
T Consensus 6 ~~C~~C~~~I~~-~~~--~a-~~~~~H~~C--------F~C~~C~~~L~ 42 (70)
T 2d8z_A 6 SGCVQCKKPITT-GGV--TY-REQPWHKEC--------FVCTACRKQLS 42 (70)
T ss_dssp CBCSSSCCBCCS-SEE--ES-SSSEEETTT--------SBCSSSCCBCT
T ss_pred CCCcccCCeecc-ceE--EE-CccccCCCC--------CccCCCCCcCC
Confidence 358899888864 232 22 578899888 45777877775
No 187
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=44.42 E-value=15 Score=22.00 Aligned_cols=39 Identities=26% Similarity=0.560 Sum_probs=27.8
Q ss_pred cccccccccccC---C-CeeeecCCCCCcccHhhHHHHHcCCCCcccccccccc
Q 043163 78 SDCAICLTEFVN---G-DEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILVV 127 (172)
Q Consensus 78 ~~C~ICL~~~~~---~-~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 127 (172)
..|+-|-..+.. + ..+.. =+..||.+| ..|-.|+.+|..
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~~a---~~~~~H~~C--------F~C~~C~~~L~~ 58 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVVAY---EGQSWHDYC--------FHCKKCSVNLAN 58 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEEEE---TTEEEETTT--------CBCSSSCCBCTT
T ss_pred ccCcccCCcccCCCCCceeEEE---CcceeCccc--------CEehhcCCCCCC
Confidence 469999998874 2 33332 467899888 468889888763
No 188
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=43.98 E-value=53 Score=19.99 Aligned_cols=17 Identities=18% Similarity=0.583 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 043163 9 ALLCALICVLGLIAVAR 25 (172)
Q Consensus 9 ~~l~~li~vi~l~~~~r 25 (172)
.++.+++|++++++++.
T Consensus 21 LifA~vLfi~GI~iilS 37 (72)
T 2jo1_A 21 LVIAGILFILGILIVLS 37 (72)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHc
Confidence 34445555555555543
No 189
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=43.57 E-value=2.2 Score=27.03 Aligned_cols=19 Identities=37% Similarity=0.833 Sum_probs=15.5
Q ss_pred eeecCCCCCcccHhhHHHH
Q 043163 93 IRVLPQCGHGFHVACIDTW 111 (172)
Q Consensus 93 ~~~l~~C~H~FH~~Ci~~W 111 (172)
.+..+.|+|.|+..|-..|
T Consensus 43 ~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 43 EATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CEECTTTCCEECSSSCSBC
T ss_pred ceEeCCCCCccccccCCch
Confidence 3566679999999998887
No 190
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=43.38 E-value=11 Score=26.49 Aligned_cols=38 Identities=24% Similarity=0.604 Sum_probs=20.1
Q ss_pred ccccccccccCCCeeeecCCCCCcccHhhHHHHHcCCCCccccccccc
Q 043163 79 DCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILV 126 (172)
Q Consensus 79 ~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 126 (172)
.|..|-..+...+.+... -++.||.+|+ .|-.|+..|.
T Consensus 67 ~C~~C~~~I~~~~~v~~a--~~~~~H~~CF--------~C~~C~~~L~ 104 (169)
T 2rgt_A 67 KCAACQLGIPPTQVVRRA--QDFVYHLHCF--------ACVVCKRQLA 104 (169)
T ss_dssp BCTTTCCBCCTTSEEEEE--TTEEEEGGGC--------BCTTTCCBCC
T ss_pred cccccccccCCCcEEEEc--CCceEeeCCC--------cCCCCCCCCC
Confidence 466666655544333221 4566666663 4666655554
No 191
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=43.26 E-value=15 Score=24.68 Aligned_cols=38 Identities=24% Similarity=0.446 Sum_probs=29.0
Q ss_pred cccccccccccCCCeeeecCCCCCcccHhhHHHHHcCCCCccccccccc
Q 043163 78 SDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILV 126 (172)
Q Consensus 78 ~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 126 (172)
..|+-|-..+.....+.. -+..||.+| ..|-.|+..|.
T Consensus 62 ~~C~~C~~~I~~~~~v~a---~~~~wH~~C--------F~C~~C~~~L~ 99 (123)
T 2l4z_A 62 KRCAGCGGKIADRFLLYA---MDSYWHSRC--------LKCSSCQAQLG 99 (123)
T ss_dssp SBBSSSSSBCCSSSEEEE---TTEEEETTT--------SBCTTTCCBGG
T ss_pred CcCcCCCCCcCCcEEEEe---CCcEEcccc--------cCcCcCCCccc
Confidence 469999998875433432 678899998 56899998886
No 192
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=43.04 E-value=15 Score=21.28 Aligned_cols=38 Identities=21% Similarity=0.498 Sum_probs=27.2
Q ss_pred cccccccccccCCCeeeecCCCCCcccHhhHHHHHcCCCCcccccccccc
Q 043163 78 SDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILVV 127 (172)
Q Consensus 78 ~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 127 (172)
..|+-|-+.+. ++.+ .. -+..||.+| ..|-.|+.+|..
T Consensus 6 ~~C~~C~~~I~-~~~~--~a-~~~~~H~~C--------F~C~~C~~~L~~ 43 (66)
T 1nyp_A 6 PICGACRRPIE-GRVV--NA-MGKQWHVEH--------FVCAKCEKPFLG 43 (66)
T ss_dssp CEETTTTEECC-SCEE--CC-TTSBEETTT--------CBCTTTCCBCSS
T ss_pred CCCcccCCEec-ceEE--EE-CccccccCc--------CEECCCCCCCCC
Confidence 35999999887 3332 32 678899888 458888887764
No 193
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=43.01 E-value=4.2 Score=24.87 Aligned_cols=19 Identities=37% Similarity=0.573 Sum_probs=13.9
Q ss_pred HHHHcCCCCcccccccccc
Q 043163 109 DTWLGSHSSCPSCRQILVV 127 (172)
Q Consensus 109 ~~Wl~~~~~CP~CR~~l~~ 127 (172)
+.|+..--.||+|+.+|..
T Consensus 2 d~~LLeiL~CP~ck~~L~~ 20 (69)
T 2pk7_A 2 DTKLLDILACPICKGPLKL 20 (69)
T ss_dssp -CCGGGTCCCTTTCCCCEE
T ss_pred ChHHHhheeCCCCCCcCeE
Confidence 4456666789999998874
No 194
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=42.22 E-value=2 Score=26.96 Aligned_cols=14 Identities=29% Similarity=0.904 Sum_probs=12.7
Q ss_pred CCCCcccHhhHHHH
Q 043163 98 QCGHGFHVACIDTW 111 (172)
Q Consensus 98 ~C~H~FH~~Ci~~W 111 (172)
.|+|.|+..|-..|
T Consensus 55 ~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 55 GCGFAFCRECKEAY 68 (80)
T ss_dssp CCSCCEETTTTEEC
T ss_pred CCCCeeccccCccc
Confidence 59999999998887
No 195
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=41.61 E-value=4 Score=24.81 Aligned_cols=20 Identities=25% Similarity=0.230 Sum_probs=14.9
Q ss_pred HHHHcCCCCccccccccccc
Q 043163 109 DTWLGSHSSCPSCRQILVVA 128 (172)
Q Consensus 109 ~~Wl~~~~~CP~CR~~l~~~ 128 (172)
+.|+..--.||+|+.+|...
T Consensus 4 d~~LLeiL~CP~ck~~L~~~ 23 (67)
T 2jny_A 4 DPQLLEVLACPKDKGPLRYL 23 (67)
T ss_dssp CGGGTCCCBCTTTCCBCEEE
T ss_pred CHHHHHHhCCCCCCCcCeEe
Confidence 45666777899999987753
No 196
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=40.61 E-value=16 Score=26.25 Aligned_cols=28 Identities=18% Similarity=0.516 Sum_probs=19.6
Q ss_pred ccccccccccCCCeeeecCCCCCcccHhhH
Q 043163 79 DCAICLTEFVNGDEIRVLPQCGHGFHVACI 108 (172)
Q Consensus 79 ~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci 108 (172)
.|+.|-..+...+.+... -++.||.+|+
T Consensus 71 ~C~~C~~~I~~~e~~i~a--~~~~~H~~CF 98 (188)
T 1rut_X 71 ACSACGQSIPASELVMRA--QGNVYHLKCF 98 (188)
T ss_dssp ECTTTCCEECTTSEEEEE--TTEEECGGGC
T ss_pred ccccCCCccccCcEEEEc--CCCEEeCCCC
Confidence 588898888665544332 5788998883
No 197
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=40.31 E-value=9.7 Score=22.13 Aligned_cols=28 Identities=18% Similarity=0.506 Sum_probs=16.3
Q ss_pred ccccccccccccCCCeeeecC--CCCCccc
Q 043163 77 FSDCAICLTEFVNGDEIRVLP--QCGHGFH 104 (172)
Q Consensus 77 ~~~C~ICL~~~~~~~~~~~l~--~C~H~FH 104 (172)
-..|++|...++-.+...+.+ .|++.|-
T Consensus 10 iL~CP~c~~~L~~~~~~L~C~~~~c~~~YP 39 (56)
T 2kpi_A 10 ILACPACHAPLEERDAELICTGQDCGLAYP 39 (56)
T ss_dssp SCCCSSSCSCEEEETTEEEECSSSCCCEEE
T ss_pred heeCCCCCCcceecCCEEEcCCcCCCcEEe
Confidence 346999998765433222333 4776663
No 198
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=40.00 E-value=16 Score=26.95 Aligned_cols=26 Identities=23% Similarity=0.585 Sum_probs=17.2
Q ss_pred eeeecCCCCCcccHhhHHHHHcCCCCccccccc
Q 043163 92 EIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQI 124 (172)
Q Consensus 92 ~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~ 124 (172)
...+++.|||++- . .....||+|..+
T Consensus 170 ~~~~C~~CG~i~~-g------~~p~~CP~C~~~ 195 (202)
T 1yuz_A 170 KFHLCPICGYIHK-G------EDFEKCPICFRP 195 (202)
T ss_dssp CEEECSSSCCEEE-S------SCCSBCTTTCCB
T ss_pred cEEEECCCCCEEc-C------cCCCCCCCCCCC
Confidence 3556666999965 2 223579999764
No 199
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=39.97 E-value=7.9 Score=32.29 Aligned_cols=51 Identities=16% Similarity=0.282 Sum_probs=33.8
Q ss_pred cccccccccCCCeeeecCCCCCcccHhhHHHH---H--cCCCCccccccccccccc
Q 043163 80 CAICLTEFVNGDEIRVLPQCGHGFHVACIDTW---L--GSHSSCPSCRQILVVARC 130 (172)
Q Consensus 80 C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~W---l--~~~~~CP~CR~~l~~~~~ 130 (172)
.-||-..+..+...+.+..|.-=||..|+.-- . ..+..||.|+.......+
T Consensus 7 yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~~~~~~ 62 (447)
T 3kv4_A 7 YCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHGPSIM 62 (447)
T ss_dssp ETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHHCCCEE
T ss_pred EEeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCccccCCchh
Confidence 34888877545556666679888999998421 1 134679999876554433
No 200
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.47 E-value=21 Score=21.43 Aligned_cols=38 Identities=26% Similarity=0.572 Sum_probs=25.9
Q ss_pred cccccccccccCCCeeeecCCCCCcccHhhHHHHHcCCCCcccccccccc
Q 043163 78 SDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILVV 127 (172)
Q Consensus 78 ~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 127 (172)
..|+-|-+.+... . +.. =+..||.+| ..|-.|+.+|..
T Consensus 16 ~~C~~C~~~I~~~-~--v~a-~~~~~H~~C--------F~C~~C~~~L~~ 53 (80)
T 2cuq_A 16 PRCARCSKTLTQG-G--VTY-RDQPWHREC--------LVCTGCQTPLAG 53 (80)
T ss_dssp CCCTTTCCCCCSC-C--EES-SSSEECTTT--------CBCSSSCCBCTT
T ss_pred CcCCCCCCEecCc-E--EEE-CCchhhhhh--------CCcccCCCcCCC
Confidence 4588998888653 2 222 678899888 357778777753
No 201
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=37.32 E-value=13 Score=27.11 Aligned_cols=26 Identities=23% Similarity=0.478 Sum_probs=17.0
Q ss_pred eeecCCCCCcccHhhHHHHHcCCCCccccccc
Q 043163 93 IRVLPQCGHGFHVACIDTWLGSHSSCPSCRQI 124 (172)
Q Consensus 93 ~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~ 124 (172)
..+++.|||++-.+ .....||+|..+
T Consensus 155 ~~~C~~CG~~~~g~------~~p~~CP~C~~~ 180 (191)
T 1lko_A 155 KWRCRNCGYVHEGT------GAPELCPACAHP 180 (191)
T ss_dssp EEEETTTCCEEEEE------ECCSBCTTTCCB
T ss_pred eEEECCCCCEeeCC------CCCCCCCCCcCC
Confidence 45556699997532 123489999774
No 202
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.29 E-value=16 Score=22.69 Aligned_cols=38 Identities=21% Similarity=0.479 Sum_probs=27.3
Q ss_pred cccccccccccCCCeeeecCCCCCcccHhhHHHHHcCCCCcccccccccc
Q 043163 78 SDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILVV 127 (172)
Q Consensus 78 ~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 127 (172)
..|+-|-..+. ++.+. . -+..||.+| ..|-.|+..|..
T Consensus 26 ~~C~~C~~~I~-~~~v~--a-~~~~~H~~C--------F~C~~C~~~L~~ 63 (90)
T 2dar_A 26 PMCAHCNQVIR-GPFLV--A-LGKSWHPEE--------FNCAHCKNTMAY 63 (90)
T ss_dssp CBBSSSCCBCC-SCEEE--E-TTEEECTTT--------CBCSSSCCBCSS
T ss_pred CCCccCCCEec-ceEEE--E-CCccccccC--------CccCCCCCCCCC
Confidence 46999999884 33333 2 678899888 468888877764
No 203
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=36.51 E-value=10 Score=26.69 Aligned_cols=26 Identities=27% Similarity=0.598 Sum_probs=16.7
Q ss_pred ecCCCCCcccHhhHHHHHcCCCCccccccccc
Q 043163 95 VLPQCGHGFHVACIDTWLGSHSSCPSCRQILV 126 (172)
Q Consensus 95 ~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 126 (172)
.+..|||.|-.. .....||.|-.++.
T Consensus 134 ~C~~Cg~~~~~~------~~~~~Cp~CG~~~~ 159 (165)
T 2lcq_A 134 VCIGCGRKFSTL------PPGGVCPDCGSKVK 159 (165)
T ss_dssp EESSSCCEESSC------CGGGBCTTTCCBEE
T ss_pred ECCCCCCcccCC------CCCCcCCCCCCcce
Confidence 344588888643 22347999988753
No 204
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=36.33 E-value=19 Score=20.79 Aligned_cols=39 Identities=18% Similarity=0.406 Sum_probs=27.4
Q ss_pred ccccccccccCCCeeeecCCCCCccc--HhhHHHHHcCCCCcccccccccc
Q 043163 79 DCAICLTEFVNGDEIRVLPQCGHGFH--VACIDTWLGSHSSCPSCRQILVV 127 (172)
Q Consensus 79 ~C~ICL~~~~~~~~~~~l~~C~H~FH--~~Ci~~Wl~~~~~CP~CR~~l~~ 127 (172)
.|+-|-..+..++....- -+..|| .+| ..|-.|+.+|..
T Consensus 4 ~C~~C~~~I~~~~~~v~a--~~~~wH~~~~C--------F~C~~C~~~L~~ 44 (65)
T 2iyb_E 4 VCQGCHNAIDPEVQRVTY--NNFSWHASTEC--------FLCSCCSKCLIG 44 (65)
T ss_dssp ECTTTSSEECTTSCEEEE--TTEEEETTTTT--------SBCTTTCCBCTT
T ss_pred CCcCCCCeeccCceEEEE--CCCccCCCCCC--------EECCCCCCcCCC
Confidence 589999988764333222 578899 888 468888887753
No 205
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.17 E-value=22 Score=21.17 Aligned_cols=36 Identities=19% Similarity=0.549 Sum_probs=22.6
Q ss_pred ccccccccccCCCeeeecCCCCCcccHhhHHHHHcCCCCccccccccc
Q 043163 79 DCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILV 126 (172)
Q Consensus 79 ~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 126 (172)
.|+-|-..+.. +.+ . .-+..||.+| ..|-.|+.+|.
T Consensus 7 ~C~~C~~~I~~-~~v--~-a~~~~wH~~C--------F~C~~C~~~L~ 42 (73)
T 1wig_A 7 GCDSCEKYITG-RVL--E-AGEKHYHPSC--------ALCVRCGQMFA 42 (73)
T ss_dssp SCSSSCCCCSS-CCB--C-CSSCCBCTTT--------SCCSSSCCCCC
T ss_pred CcccCCCEecC-eeE--E-eCCCCCCCCc--------CEeCCCCCCCC
Confidence 58888877754 222 2 2677888877 34666666655
No 206
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.51 E-value=23 Score=20.62 Aligned_cols=38 Identities=24% Similarity=0.634 Sum_probs=25.3
Q ss_pred cccccccccccCCCeeeecCCCCCcccHhhHHHHHcCCCCcccccccccc
Q 043163 78 SDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILVV 127 (172)
Q Consensus 78 ~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 127 (172)
..|+-|-+.+.. +.+.. -+..||.+|+ .|-.|+..|..
T Consensus 6 ~~C~~C~~~I~~-~~~~a---~~~~~H~~CF--------~C~~C~~~L~~ 43 (70)
T 2d8x_A 6 SGCHQCGEFIIG-RVIKA---MNNSWHPECF--------RCDLCQEVLAD 43 (70)
T ss_dssp SBCSSSCCBCCS-CCEEE---TTEEECTTTS--------BCSSSCCBCSS
T ss_pred CcCccCCCEecc-eEEEE---CcccccccCC--------EeCCCCCcCCC
Confidence 458888888763 33322 5678888883 57777777664
No 207
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.20 E-value=25 Score=20.40 Aligned_cols=37 Identities=24% Similarity=0.583 Sum_probs=24.2
Q ss_pred cccccccccccCCCeeeecCCCCCcccHhhHHHHHcCCCCccccccccc
Q 043163 78 SDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILV 126 (172)
Q Consensus 78 ~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 126 (172)
..|+-|-+.+.. +.+.. -+..||.+| ..|-.|+.+|.
T Consensus 6 ~~C~~C~~~I~~-~~~~a---~~~~~H~~C--------F~C~~C~~~L~ 42 (69)
T 2cur_A 6 SGCVKCNKAITS-GGITY---QDQPWHADC--------FVCVTCSKKLA 42 (69)
T ss_dssp CCCSSSCCCCCT-TCEEE---TTEEECTTT--------TBCTTTCCBCT
T ss_pred CCCcccCCEeCc-ceEEE---CccccccCc--------CEECCCCCCCC
Confidence 358888887753 33322 467788877 35777777765
No 208
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.17 E-value=28 Score=21.03 Aligned_cols=38 Identities=16% Similarity=0.352 Sum_probs=26.6
Q ss_pred cccccccccccCCCeeeecCCCCCcccHhhHHHHHcCCCCcccccccccc
Q 043163 78 SDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILVV 127 (172)
Q Consensus 78 ~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 127 (172)
..|+-|-..+. ++.+ . .-+..||.+| ..|-.|+.+|..
T Consensus 16 ~~C~~C~~~I~-~~~v--~-a~~~~~H~~C--------F~C~~C~~~L~~ 53 (79)
T 2cor_A 16 YICQKCHAIID-EQPL--I-FKNDPYHPDH--------FNCANCGKELTA 53 (79)
T ss_dssp CBCTTTCCBCC-SCCC--C-CSSSCCCTTT--------SBCSSSCCBCCT
T ss_pred CCCccCCCEec-ceEE--E-ECcceeCCCC--------CEeCCCCCccCC
Confidence 46999998886 3332 2 2678899888 468888877764
No 209
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=34.65 E-value=12 Score=24.55 Aligned_cols=46 Identities=26% Similarity=0.605 Sum_probs=28.4
Q ss_pred cccccccccccCCCeeeecCCCCCcccHhhHHHHHcCCCCcccccccccccccccCC
Q 043163 78 SDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILVVARCQKCG 134 (172)
Q Consensus 78 ~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~~~~~~ 134 (172)
..||+|-.+++... ++.++..|-.. ++....||-|..+|. .++.||
T Consensus 33 ~~CP~Cq~eL~~~g--------~~~hC~~C~~~-f~~~a~CPdC~q~Le--vLkACG 78 (101)
T 2jne_A 33 LHCPQCQHVLDQDN--------GHARCRSCGEF-IEMKALCPDCHQPLQ--VLKACG 78 (101)
T ss_dssp CBCSSSCSBEEEET--------TEEEETTTCCE-EEEEEECTTTCSBCE--EEEETT
T ss_pred ccCccCCCcceecC--------CEEECccccch-hhccccCcchhhHHH--HHHHhc
Confidence 57999998874322 23334555332 344567999988775 356665
No 210
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=33.42 E-value=18 Score=22.23 Aligned_cols=16 Identities=31% Similarity=0.870 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 043163 9 ALLCALICVLGLIAVA 24 (172)
Q Consensus 9 ~~l~~li~vi~l~~~~ 24 (172)
.++.+++|++++++++
T Consensus 24 LifA~vLfi~GI~iil 39 (74)
T 2zxe_G 24 LIVAAVLCVIGIIILL 39 (74)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHH
Confidence 3444555555555553
No 211
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.80 E-value=23 Score=21.41 Aligned_cols=36 Identities=25% Similarity=0.598 Sum_probs=25.4
Q ss_pred ccccccccccCCCeeeecCCCCCcccHhhHHHHHcCCCCccccccccc
Q 043163 79 DCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILV 126 (172)
Q Consensus 79 ~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 126 (172)
.|+-|-..+. ++.+.. -+..||.+| ..|-.|+.+|.
T Consensus 17 ~C~~C~~~I~-~~~v~a---~~~~wH~~C--------F~C~~C~~~L~ 52 (81)
T 1v6g_A 17 RCFSCDQFIE-GEVVSA---LGKTYHPDC--------FVCAVCRLPFP 52 (81)
T ss_dssp BCTTTCCBCC-SCCEEE---TTEEECTTT--------SSCSSSCCCCC
T ss_pred cCccccCEec-cceEEE---CCceeCccC--------CccccCCCCCC
Confidence 6999999887 333332 578899888 44777777765
No 212
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=32.62 E-value=5.7 Score=31.46 Aligned_cols=48 Identities=21% Similarity=0.347 Sum_probs=28.7
Q ss_pred CccccccccccccCCCeeee-cCCCC--CcccHhhHHHHHcCCCCccccccc
Q 043163 76 KFSDCAICLTEFVNGDEIRV-LPQCG--HGFHVACIDTWLGSHSSCPSCRQI 124 (172)
Q Consensus 76 ~~~~C~ICL~~~~~~~~~~~-l~~C~--H~FH~~Ci~~Wl~~~~~CP~CR~~ 124 (172)
....||+|-..-... .++. -..=| |.+|.-|-..|--.+..||.|-..
T Consensus 181 ~~~~CPvCGs~P~~s-~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 181 SRTLCPACGSPPMAG-MIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TCSSCTTTCCCEEEE-EEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred cCCCCCCCCCcCcee-EEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 345799998764321 1111 00022 556667777787778899999664
No 213
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.52 E-value=15 Score=22.84 Aligned_cols=34 Identities=18% Similarity=0.296 Sum_probs=23.4
Q ss_pred CCccccccccccccC-CCeeeecCCCCCcccHhhH
Q 043163 75 AKFSDCAICLTEFVN-GDEIRVLPQCGHGFHVACI 108 (172)
Q Consensus 75 ~~~~~C~ICL~~~~~-~~~~~~l~~C~H~FH~~Ci 108 (172)
..+..|+.|.+.|-- .+.-...+.|.|..+.+|-
T Consensus 23 ~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Cr 57 (76)
T 2csz_A 23 YSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCR 57 (76)
T ss_dssp CCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSE
T ss_pred CCccchhhhCccccccccCCCcCcccChhhccccc
Confidence 555689999999853 2233344468898888883
No 214
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=32.51 E-value=41 Score=19.84 Aligned_cols=48 Identities=23% Similarity=0.481 Sum_probs=29.0
Q ss_pred CCccccccccc-cccCCCeeeecCCCCCcccHhhHHHHHcC-CC---Ccccccc
Q 043163 75 AKFSDCAICLT-EFVNGDEIRVLPQCGHGFHVACIDTWLGS-HS---SCPSCRQ 123 (172)
Q Consensus 75 ~~~~~C~ICL~-~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~-~~---~CP~CR~ 123 (172)
.....|.||+. .|.++-.-.-.- |.-.|+..|-..|-.. +. .|-+||+
T Consensus 7 ~d~~~C~iC~KTKFADG~Gh~C~y-Ck~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 7 GDAPTCGICHKTKFADGCGHNCSY-CQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp SCCCCCSSSSCSCCCSSCCEEBTT-TCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred CCcchhhhhccceeccCCCccccc-cCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 44567999998 665554333333 7777777776655322 22 3777764
No 215
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=32.24 E-value=61 Score=17.31 Aligned_cols=17 Identities=18% Similarity=0.309 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 043163 7 LAALLCALICVLGLIAV 23 (172)
Q Consensus 7 ~~~~l~~li~vi~l~~~ 23 (172)
.+++++++..+++.+++
T Consensus 13 ~lII~~vmaGiIG~Ill 29 (40)
T 1afo_A 13 TLIIFGVMAGVIGTILL 29 (40)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 216
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=32.06 E-value=59 Score=17.04 Aligned_cols=9 Identities=22% Similarity=0.287 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 043163 13 ALICVLGLI 21 (172)
Q Consensus 13 ~li~vi~l~ 21 (172)
++++.++.+
T Consensus 14 alIiaIVVW 22 (36)
T 1pi7_A 14 AIIIAIVVW 22 (36)
T ss_pred HHHHHHHHH
Confidence 333333333
No 217
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=32.02 E-value=4.3 Score=24.75 Aligned_cols=18 Identities=17% Similarity=0.121 Sum_probs=13.0
Q ss_pred HHcCCCCccccccccccc
Q 043163 111 WLGSHSSCPSCRQILVVA 128 (172)
Q Consensus 111 Wl~~~~~CP~CR~~l~~~ 128 (172)
|+..--.||+|+.+|...
T Consensus 4 ~LL~iL~CP~ck~~L~~~ 21 (68)
T 2jr6_A 4 KFLDILVCPVTKGRLEYH 21 (68)
T ss_dssp SSSCCCBCSSSCCBCEEE
T ss_pred HHhhheECCCCCCcCeEe
Confidence 455556799999887754
No 218
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=31.99 E-value=4.7 Score=23.83 Aligned_cols=35 Identities=17% Similarity=0.554 Sum_probs=22.0
Q ss_pred cccccccccccCCCeeeecC--C--CCCcccHhhHHHHH
Q 043163 78 SDCAICLTEFVNGDEIRVLP--Q--CGHGFHVACIDTWL 112 (172)
Q Consensus 78 ~~C~ICL~~~~~~~~~~~l~--~--C~H~FH~~Ci~~Wl 112 (172)
..||-|...++..+....+. . |+|.|+..|..+|-
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~ 45 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWE 45 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcc
Confidence 35999988887755332222 2 56777777776664
No 219
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=31.92 E-value=14 Score=26.39 Aligned_cols=46 Identities=11% Similarity=0.119 Sum_probs=28.9
Q ss_pred CccccccccccccCCCeeeecCCCCCcccHhhHHHHHcCCCCcccccccccc
Q 043163 76 KFSDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILVV 127 (172)
Q Consensus 76 ~~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 127 (172)
.-..|..|...+.... .. . =|..||..|...- -...|..|...|..
T Consensus 86 ~CF~C~~C~~~L~~~~--f~-~-~g~~yC~~~y~~~--f~~kC~~C~~~I~~ 131 (182)
T 2jtn_A 86 KCLKCSDCHVPLAERC--FS-R-GESVYCKDDFFKR--FGTKCAACQLGIPP 131 (182)
T ss_dssp STTSCTTTCCCCSSCC--EE-E-TTEEECHHHHHHT--TSCCCTTTCCCCCS
T ss_pred ccCccCCCCCccCCCc--ee-E-CCEeeecCccccc--cccccccCCCccCC
Confidence 3456888888776532 22 2 4677888877653 24567777776654
No 220
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=31.71 E-value=30 Score=22.92 Aligned_cols=47 Identities=17% Similarity=0.356 Sum_probs=26.7
Q ss_pred cccccccccccC-CCeeeecCCCCCcccHhhHHHHHcCCCCccccccccc
Q 043163 78 SDCAICLTEFVN-GDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILV 126 (172)
Q Consensus 78 ~~C~ICL~~~~~-~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 126 (172)
..|..|-..+.. +...... =|..|+..|..+-+..+..|..|...|.
T Consensus 30 F~C~~C~~~L~~~~~~~~~~--~g~~yC~~~y~~~~~~~~~C~~C~~~I~ 77 (131)
T 2xjy_A 30 LSCDLCGCRLGEVGRRLYYK--LGRKLCRRDYLRLFGQDGLCASCDKRIR 77 (131)
T ss_dssp CBCTTTCCBCSSTTCCEEEE--TTEEECHHHHHHHHCCCEECTTTCCEEC
T ss_pred cccCcCCCccccCCCeEEEE--CCEEeecCchhhhCCCccChhhcCCccC
Confidence 456667666643 2222222 4566777777665544446777777665
No 221
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.33 E-value=28 Score=20.95 Aligned_cols=47 Identities=23% Similarity=0.415 Sum_probs=27.6
Q ss_pred cccccccccccCCCeeeecCCCC---CcccHhhHHHHH--cCCCCcccccccccc
Q 043163 78 SDCAICLTEFVNGDEIRVLPQCG---HGFHVACIDTWL--GSHSSCPSCRQILVV 127 (172)
Q Consensus 78 ~~C~ICL~~~~~~~~~~~l~~C~---H~FH~~Ci~~Wl--~~~~~CP~CR~~l~~ 127 (172)
..| ||-... .+ .++....|. .-||..|+..-- .....||.|+.....
T Consensus 7 ~yC-~C~~~~-~g-~MI~CD~cdC~~~WfH~~Cvgl~~~p~~~w~Cp~C~~~~~k 58 (70)
T 1x4i_A 7 GYC-ICNQVS-YG-EMVGCDNQDCPIEWFHYGCVGLTEAPKGKWYCPQCTAAMKR 58 (70)
T ss_dssp CCS-TTSCCC-CS-SEECCSCTTCSCCCEEHHHHTCSSCCSSCCCCHHHHHHHHH
T ss_pred eEE-EcCCCC-CC-CEeEeCCCCCCccCCcccccccCcCCCCCEECCCCCccccc
Confidence 346 577653 33 344444453 569999987311 124569999876543
No 222
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=30.94 E-value=28 Score=21.16 Aligned_cols=16 Identities=13% Similarity=0.457 Sum_probs=8.7
Q ss_pred CCCccccccccccccc
Q 043163 115 HSSCPSCRQILVVARC 130 (172)
Q Consensus 115 ~~~CP~CR~~l~~~~~ 130 (172)
...||.|...++-..+
T Consensus 45 ~irCp~CG~RILyK~R 60 (70)
T 1twf_L 45 AVRCKDCGHRILLKAR 60 (70)
T ss_dssp TTCCSSSCCCCCBCCC
T ss_pred CccCCCCCceEeEecC
Confidence 3457777665554433
No 223
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=30.43 E-value=27 Score=24.99 Aligned_cols=29 Identities=17% Similarity=0.511 Sum_probs=20.9
Q ss_pred ccccccccccccCCCeeeecCCCCCcccHhhH
Q 043163 77 FSDCAICLTEFVNGDEIRVLPQCGHGFHVACI 108 (172)
Q Consensus 77 ~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci 108 (172)
...|+.|-..+..++.+.. =+..||.+|+
T Consensus 115 ~~~C~~C~~~I~~~~~v~a---~~~~~H~~CF 143 (192)
T 1b8t_A 115 SDGCPRCGQAVYAAEKVIG---AGKSWHKSCF 143 (192)
T ss_dssp CEECTTTSCEECSSSCEEE---TTEEECTTTC
T ss_pred CCcCCCCCCEecCcEEEec---CCCccchhcC
Confidence 3469999998876665543 4678888873
No 224
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=29.95 E-value=22 Score=22.39 Aligned_cols=29 Identities=28% Similarity=0.596 Sum_probs=19.9
Q ss_pred cccccccccccCCCeeeecCCCCCcccHhhH
Q 043163 78 SDCAICLTEFVNGDEIRVLPQCGHGFHVACI 108 (172)
Q Consensus 78 ~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci 108 (172)
..|..|-..+..++.++.. =+..||.+|+
T Consensus 67 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF 95 (101)
T 2cup_A 67 PKCKGCFKAIVAGDQNVEY--KGTVWHKDCF 95 (101)
T ss_dssp CBCSSSCCBCCSSSCEEES--SSCEEETTTC
T ss_pred CccccCCCccccCCeEEEe--CCcchHHhCC
Confidence 4688888888765544333 5788888773
No 225
>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens}
Probab=29.72 E-value=13 Score=25.35 Aligned_cols=27 Identities=15% Similarity=0.207 Sum_probs=20.2
Q ss_pred CCCCcccHhhHHHHHc---C--CCCccccccc
Q 043163 98 QCGHGFHVACIDTWLG---S--HSSCPSCRQI 124 (172)
Q Consensus 98 ~C~H~FH~~Ci~~Wl~---~--~~~CP~CR~~ 124 (172)
.|.|+++..++..|-. . ...|+.|+..
T Consensus 6 ~C~H~~~~~~l~~~~~~~~~~~~~~C~~C~~~ 37 (126)
T 2i50_A 6 VCRHIRKGLEQGNLKKALVNVEWNICQDCKTD 37 (126)
T ss_dssp CCSCHHHHCCHHHHHHHHSSCCSSSCHHHHTC
T ss_pred CCcChhhccccccccccccCCCCCcCcccccc
Confidence 3999999999888742 2 2469999763
No 226
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=29.26 E-value=4.6 Score=24.73 Aligned_cols=18 Identities=28% Similarity=0.447 Sum_probs=12.5
Q ss_pred HHcCCCCccccccccccc
Q 043163 111 WLGSHSSCPSCRQILVVA 128 (172)
Q Consensus 111 Wl~~~~~CP~CR~~l~~~ 128 (172)
|+..--.||+|+.+|...
T Consensus 4 ~LL~iL~CP~ck~~L~~~ 21 (70)
T 2js4_A 4 RLLDILVCPVCKGRLEFQ 21 (70)
T ss_dssp CCCCCCBCTTTCCBEEEE
T ss_pred HHhhheECCCCCCcCEEe
Confidence 444556799999887753
No 227
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.41 E-value=27 Score=21.03 Aligned_cols=38 Identities=26% Similarity=0.659 Sum_probs=26.3
Q ss_pred cccccccccccCCCeeeecCCCCCcccHhhHHHHHcCCCCcccccccccc
Q 043163 78 SDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILVV 127 (172)
Q Consensus 78 ~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 127 (172)
..|+-|-..+.. ..+. . -+..||.+| ..|-.|+.+|..
T Consensus 16 ~~C~~C~~~I~~-~~~~--a-~~~~~H~~C--------F~C~~C~~~L~~ 53 (81)
T 2dlo_A 16 EKCATCSQPILD-RILR--A-MGKAYHPGC--------FTCVVCHRGLDG 53 (81)
T ss_dssp CBCTTTCCBCCS-CCEE--E-TTEEECTTT--------CBCSSSCCBCTT
T ss_pred CccccCCCeecc-eeEE--E-CCccccHHh--------cCcccCCCccCC
Confidence 469999888863 2222 2 578899888 458888877763
No 228
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=28.34 E-value=34 Score=30.41 Aligned_cols=38 Identities=24% Similarity=0.565 Sum_probs=28.4
Q ss_pred CccccccccccccC-------CCeeeecCCCCCcccHhhHHHHHcC
Q 043163 76 KFSDCAICLTEFVN-------GDEIRVLPQCGHGFHVACIDTWLGS 114 (172)
Q Consensus 76 ~~~~C~ICL~~~~~-------~~~~~~l~~C~H~FH~~Ci~~Wl~~ 114 (172)
-..+||+|+....+ .....-+. |+-.||.+|++..++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~e~~c~~c~~~~~~~ 56 (776)
T 4gut_A 12 CTATCPVCFASASERCAKNGYTSRWYHLS-CGEHFCNECFDHYYRS 56 (776)
T ss_dssp CCCSSCCBSCCCSTTCCTTSCBSCEEEEE-TTEEEEHHHHHHHHST
T ss_pred CcccccHHHHHHHHHHHhCCCCcceeEec-cccchhHHHHHHHhcc
Confidence 34578999877644 23577887 9999999999977654
No 229
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=28.29 E-value=4.2 Score=24.76 Aligned_cols=18 Identities=28% Similarity=0.442 Sum_probs=12.2
Q ss_pred HHcCCCCccccccccccc
Q 043163 111 WLGSHSSCPSCRQILVVA 128 (172)
Q Consensus 111 Wl~~~~~CP~CR~~l~~~ 128 (172)
|+..--.||+|+.+|...
T Consensus 4 ~LL~iL~CP~ck~~L~~~ 21 (68)
T 2hf1_A 4 KFLEILVCPLCKGPLVFD 21 (68)
T ss_dssp CCEEECBCTTTCCBCEEE
T ss_pred HHhhheECCCCCCcCeEe
Confidence 344445699999887753
No 230
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=27.59 E-value=18 Score=23.84 Aligned_cols=45 Identities=16% Similarity=0.192 Sum_probs=27.9
Q ss_pred ccccccccccCCCeeeecCCCCCcccHhhHHHHHc--------CCCCcccccc
Q 043163 79 DCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLG--------SHSSCPSCRQ 123 (172)
Q Consensus 79 ~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~--------~~~~CP~CR~ 123 (172)
.|..|....+.+..+.....|...||..|...... ....||.|+.
T Consensus 61 ~c~~c~~~~~~~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~ 113 (117)
T 4bbq_A 61 EVDQNEETQDFEKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQ 113 (117)
T ss_dssp CBCCHHHHCCGGGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC-
T ss_pred cccccccccccCcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcC
Confidence 35555555544455666667999999999764321 1235999864
No 231
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=27.51 E-value=14 Score=17.87 Aligned_cols=11 Identities=36% Similarity=1.105 Sum_probs=7.2
Q ss_pred CCccccccccc
Q 043163 116 SSCPSCRQILV 126 (172)
Q Consensus 116 ~~CP~CR~~l~ 126 (172)
.+||+|..-++
T Consensus 7 vqcpvcqq~mp 17 (29)
T 3vhs_A 7 VQCPVCQQMMP 17 (29)
T ss_dssp EECTTTCCEEE
T ss_pred eeChHHHHhCc
Confidence 35888866554
No 232
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=27.37 E-value=41 Score=21.83 Aligned_cols=34 Identities=15% Similarity=0.219 Sum_probs=16.5
Q ss_pred cccccccccccC-CCeeeecCCCCCcccHhhHHHHHc
Q 043163 78 SDCAICLTEFVN-GDEIRVLPQCGHGFHVACIDTWLG 113 (172)
Q Consensus 78 ~~C~ICL~~~~~-~~~~~~l~~C~H~FH~~Ci~~Wl~ 113 (172)
..|..|-..+.. +.... .. =+..|+..|..+-+.
T Consensus 31 F~C~~C~~~L~~~g~~~~-~~-~g~~yC~~~y~~~f~ 65 (114)
T 1j2o_A 31 LSCDLCGCRLGEVGRRLY-YK-LGRKLCRRDYLRLGG 65 (114)
T ss_dssp CCCSSSCSCCCCSSSCCC-CB-TTBCCCHHHHHHHHT
T ss_pred CcccccCCchhcCCCeeE-EE-CCeeechHHHHHHhC
Confidence 456666665542 11221 11 355666666665443
No 233
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: g.49.1.1
Probab=26.74 E-value=86 Score=19.60 Aligned_cols=43 Identities=19% Similarity=0.459 Sum_probs=29.9
Q ss_pred CCCccccccccccccCC---CeeeecCCCCCcccHhhHHHHHcCCCCccc
Q 043163 74 VAKFSDCAICLTEFVNG---DEIRVLPQCGHGFHVACIDTWLGSHSSCPS 120 (172)
Q Consensus 74 ~~~~~~C~ICL~~~~~~---~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~ 120 (172)
......|.+|-+..... ...+-+- |+-..|.+|+... ...|++
T Consensus 35 l~~~s~C~vC~k~c~s~~~L~g~rC~W-Cq~~VH~~C~~~~---~~eC~l 80 (84)
T 1r79_A 35 LPVSAKCTVCDKTCGSVLRLQDWRCLW-CKAMVHTSCKESL---LTKCSG 80 (84)
T ss_dssp CCTTCBCSSSCCBCCCTTTCCCEEESS-SCCEECHHHHHHC---CSCBCC
T ss_pred CCCCCEeCCCCCEeCCccCCCCCCCcc-cChhHHHHHHHhc---cCcCCC
Confidence 34446799998875432 3456666 9999999999885 555654
No 234
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=25.80 E-value=37 Score=22.26 Aligned_cols=44 Identities=14% Similarity=0.215 Sum_probs=22.7
Q ss_pred cccccccccccCCCeeeecCCCCCcccHhhHHHHHcCCCCccccccccc
Q 043163 78 SDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILV 126 (172)
Q Consensus 78 ~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 126 (172)
..|..|-..+... .. ... =|..||..|...- ....|..|...|.
T Consensus 31 F~C~~C~~~L~~~-~f-~~~-~g~~yC~~cy~~~--~~~~C~~C~~~I~ 74 (126)
T 2xqn_T 31 FCCFDCDSILAGE-IY-VMV-NDKPVCKPCYVKN--HAVVCQGCHNAID 74 (126)
T ss_dssp SBCTTTCCBCTTS-EE-EEE-TTEEEEHHHHHHH--SCCBCTTTCSBCC
T ss_pred CCcCCCCCCCCcC-EE-EeE-CCEEechHHhCcC--cCccCcccCCcCC
Confidence 4566666665431 22 122 4556666666542 2345666666665
No 235
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=25.65 E-value=92 Score=20.25 Aligned_cols=26 Identities=23% Similarity=0.657 Sum_probs=17.2
Q ss_pred CCCCcccHhhHH------HHHcC-----CCCcccccc
Q 043163 98 QCGHGFHVACID------TWLGS-----HSSCPSCRQ 123 (172)
Q Consensus 98 ~C~H~FH~~Ci~------~Wl~~-----~~~CP~CR~ 123 (172)
.|++-||..|+. .-+.. ...||.|..
T Consensus 7 ~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~ 43 (140)
T 2ku7_A 7 KCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTE 43 (140)
T ss_dssp CCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTT
T ss_pred cCCCccCCcccccCHHHHHHHhhccccceeeCccccc
Confidence 489999999952 11222 367999954
No 236
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=24.19 E-value=76 Score=18.68 Aligned_cols=34 Identities=21% Similarity=0.457 Sum_probs=27.9
Q ss_pred cccccccccccCCCeeeecCCCCCcccHh-hHHHH
Q 043163 78 SDCAICLTEFVNGDEIRVLPQCGHGFHVA-CIDTW 111 (172)
Q Consensus 78 ~~C~ICL~~~~~~~~~~~l~~C~H~FH~~-Ci~~W 111 (172)
..|+-|-..+.++.....-...-|+||.. ||..+
T Consensus 21 v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL~~f 55 (62)
T 2das_A 21 ITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSF 55 (62)
T ss_dssp CBCTTTCCBCCTTSCCEECTTCCCEESSHHHHHHH
T ss_pred cChhhccchhhcCceeeeecCchhheechHHHccc
Confidence 46999999999998776666688999875 88875
No 237
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.93 E-value=55 Score=19.42 Aligned_cols=38 Identities=16% Similarity=0.441 Sum_probs=26.2
Q ss_pred cccccccccccCCCeeeecCCCCCcccHhhHHHHHcCCCCcccccccccc
Q 043163 78 SDCAICLTEFVNGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILVV 127 (172)
Q Consensus 78 ~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 127 (172)
..|+-|-..+.. +.+.. -+..||.+| ..|-.|+.+|..
T Consensus 16 ~~C~~C~~~I~~-~~v~a---~~~~~H~~C--------F~C~~C~~~L~~ 53 (80)
T 1x3h_A 16 PKCGGCNRPVLE-NYLSA---MDTVWHPEC--------FVCGDCFTSFST 53 (80)
T ss_dssp CBCTTTCCBCCS-SCEEE---TTEEECTTT--------CBCSSSCCBSCS
T ss_pred CccccCCCeecc-eeEEE---CCCeEecCc--------CChhhCCCCCCC
Confidence 359999888865 33322 567889888 457888877764
No 238
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=22.80 E-value=58 Score=18.95 Aligned_cols=33 Identities=21% Similarity=0.276 Sum_probs=24.6
Q ss_pred ccccccccccccCCCeeeecCCCCCcccHhhHH
Q 043163 77 FSDCAICLTEFVNGDEIRVLPQCGHGFHVACID 109 (172)
Q Consensus 77 ~~~C~ICL~~~~~~~~~~~l~~C~H~FH~~Ci~ 109 (172)
...|.+|-+.+.-+........|+-.-|.+|.+
T Consensus 19 ~~~C~~Cg~~i~~gkq~~kC~dC~~~cH~~C~~ 51 (61)
T 4b6d_A 19 PESCVPCGKRIKFGKLSLKCRDCRVVSHPECRD 51 (61)
T ss_dssp CEECTTTCCEECTTCEEEEESSSSCEECGGGGG
T ss_pred CcccccccCEEEEeeEeeECCCCCCeEchhHhh
Confidence 357999987776665555556799999999944
No 239
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=21.22 E-value=23 Score=23.02 Aligned_cols=13 Identities=31% Similarity=0.759 Sum_probs=9.2
Q ss_pred CCCcccccccccc
Q 043163 115 HSSCPSCRQILVV 127 (172)
Q Consensus 115 ~~~CP~CR~~l~~ 127 (172)
...||+|.+.+..
T Consensus 47 g~~CPvCgs~l~~ 59 (112)
T 1l8d_A 47 KGKCPVCGRELTD 59 (112)
T ss_dssp SEECTTTCCEECH
T ss_pred CCCCCCCCCcCCH
Confidence 4469999877663
Done!