Your job contains 1 sequence.
>043164
MDPGRYGLQQGWDNNSALEGYGAIHEPNFRVGGSYDERRFLDERYSRDNIYPRNAFQREN
YPPPPVGLWPQSRRRNYEEDYSLDRESRRHEKPYIDSYHEMDAYCGHEIDSFPEFDKFRD
GYRNIENYRDHGFERPPRFGGRDRDRDDYDDYDYRSRSSHQSREDSREGDCDFGRLSYDS
DYDRGSRRDGSWRRHESRDRERDKRCLSRERELSPHRRHEHSASRSQSRSRSRGRDDRPR
SRSPRGRSHGRSHREDSYDDGRYERIEKRRDREERRQREHYAVAPSGTIVVKGLSQKTTE
EDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKL
FFEYSSKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEAR
TDDAPPAEMNSSNPIPLGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLV
RDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYAKSILGPGSGMSASS
QSSSLAAAAIEAAAFSQQYDAVGWAPKEYNPDDKQPTRGQEQRSDGDMVQKDGLALQSGF
VWDEASGYYYDAASGFYYDGNTGLYYDGNSGIWYSYDQQTQQYIPCTDQNDNKTSGNGSE
PSKQVDGGSKNRKVVISAPAATVSSVEKPASLPDAVQAAATAAIAAEKKGKEKSKEVKVV
SKSTIVANKKKLNNATMWKQWSHDNQQSASADDRPGPAGQASKTKFKSDSAATKENNTFS
SGAGAPTAIPQAVGLDSPVKSKPVSSTSGGTLMGVIRNSGRGFQPGSSGGLSASSTAPPS
SAGSSSSVNSDTITAVTPFRTDASALGSYTPPVATGSGKRRFSEMPLPPATQKEQPQTTY
RDRAAERRSLYGSSFSAGDDLPDVGSGDSNRDFALKKGSVDSMPFPPGVGGRGFTADSVQ
SYEVITADKAIDENNVGNRMLRSMGWHEGLGLGKDGSGMIEPVQAQAMDSRAGLGSQQKK
VDPSLEVQAGDSYKTLIHKKALARFREMS
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 043164
(1049 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|A0JMV4 - symbol:rbm5-a "RNA-binding protein 5-A... 202 4.8e-46 6
UNIPROTKB|A4IGK4 - symbol:rbm5 "RNA-binding protein 5" sp... 199 1.1e-45 6
UNIPROTKB|Q6DDU9 - symbol:rbm5-b "RNA-binding protein 5-B... 198 1.4e-45 6
MGI|MGI:1933204 - symbol:Rbm5 "RNA binding motif protein ... 185 1.2e-42 6
UNIPROTKB|F1SPQ8 - symbol:RBM5 "Uncharacterized protein" ... 184 1.5e-42 6
UNIPROTKB|P52756 - symbol:RBM5 "RNA-binding protein 5" sp... 185 1.9e-42 6
RGD|1305059 - symbol:Rbm5 "RNA binding motif protein 5" s... 185 1.9e-42 6
UNIPROTKB|E2QUP3 - symbol:RBM5 "Uncharacterized protein" ... 185 3.7e-42 6
UNIPROTKB|Q1RMU5 - symbol:RBM5 "RNA-binding protein 5" sp... 185 9.6e-42 6
UNIPROTKB|E1BXK5 - symbol:E1BXK5 "Uncharacterized protein... 163 3.5e-39 6
UNIPROTKB|P98175 - symbol:RBM10 "RNA-binding protein 10" ... 172 1.6e-33 5
UNIPROTKB|F1LWM0 - symbol:F1LWM0 "Uncharacterized protein... 172 5.1e-33 5
MGI|MGI:2384310 - symbol:Rbm10 "RNA binding motif protein... 172 5.1e-33 5
UNIPROTKB|F1MFZ9 - symbol:RBM10 "Uncharacterized protein"... 175 6.1e-32 4
UNIPROTKB|F1RWX6 - symbol:LOC100525622 "Uncharacterized p... 175 8.6e-32 5
RGD|631366 - symbol:Rbm10 "RNA binding motif protein 10" ... 172 4.0e-31 5
UNIPROTKB|P70501 - symbol:Rbm10 "RNA-binding protein 10" ... 172 4.0e-31 5
UNIPROTKB|F1PDM2 - symbol:RBM10 "Uncharacterized protein"... 175 1.7e-30 4
UNIPROTKB|J9P453 - symbol:RBM10 "Uncharacterized protein"... 175 2.5e-29 5
DICTYBASE|DDB_G0269006 - symbol:DDB_G0269006 "D111/G-patc... 171 8.7e-29 5
FB|FBgn0031319 - symbol:CG4896 species:7227 "Drosophila m... 139 3.7e-27 5
FB|FBgn0031318 - symbol:CG4887 species:7227 "Drosophila m... 131 6.8e-26 5
WB|WBGene00020346 - symbol:T08B2.5 species:6239 "Caenorha... 156 1.8e-19 5
ZFIN|ZDB-GENE-060929-836 - symbol:aggf1 "angiogenic facto... 156 1.4e-16 4
UNIPROTKB|F1MKY1 - symbol:AGGF1 "Uncharacterized protein"... 144 1.6e-15 2
ASPGD|ASPL0000078120 - symbol:AN4850 species:162425 "Emer... 141 2.5e-15 6
UNIPROTKB|F1NWU4 - symbol:AGGF1 "Uncharacterized protein"... 141 2.6e-15 2
ZFIN|ZDB-GENE-100922-245 - symbol:si:ch73-205c16.2 "si:ch... 122 7.2e-15 4
UNIPROTKB|F1S2H1 - symbol:AGGF1 "Uncharacterized protein"... 138 5.4e-14 3
UNIPROTKB|E2RLI2 - symbol:AGGF1 "Uncharacterized protein"... 135 5.5e-14 3
MGI|MGI:1913799 - symbol:Aggf1 "angiogenic factor with G ... 136 1.3e-13 2
UNIPROTKB|F1MAK0 - symbol:F1MAK0 "Uncharacterized protein... 132 2.1e-13 2
POMBASE|SPAC57A7.13 - symbol:SPAC57A7.13 "RNA-binding pro... 131 2.4e-13 3
UNIPROTKB|Q8N302 - symbol:AGGF1 "Angiogenic factor with G... 131 3.6e-13 2
UNIPROTKB|Q5R951 - symbol:DKFZp459G1317 "Putative unchara... 133 6.4e-13 3
UNIPROTKB|Q28IQ9 - symbol:cirbp "Cold-inducible RNA-bindi... 138 1.1e-11 2
DICTYBASE|DDB_G0290307 - symbol:DDB_G0290307 "ELAVL1-like... 137 2.2e-11 2
FB|FBgn0034002 - symbol:CG8079 species:7227 "Drosophila m... 144 2.7e-11 3
TAIR|locus:2124306 - symbol:AT4G34140 species:3702 "Arabi... 103 6.3e-10 3
UNIPROTKB|P98179 - symbol:RBM3 "Putative RNA-binding prot... 136 6.3e-10 2
ZFIN|ZDB-GENE-050417-329 - symbol:zgc:112425 "zgc:112425"... 138 1.0e-09 2
FB|FBgn0038345 - symbol:CG5213 species:7227 "Drosophila m... 108 1.1e-09 2
UNIPROTKB|B4DQI6 - symbol:TRA2A "cDNA FLJ50614, highly si... 150 1.9e-09 1
UNIPROTKB|B4DUA9 - symbol:TRA2A "Transformer-2 protein ho... 150 1.9e-09 1
TAIR|locus:2136298 - symbol:CCR1 "cold, circadian rhythm,... 131 4.3e-09 2
TAIR|locus:2184837 - symbol:AT5G09390 "AT5G09390" species... 166 4.5e-09 1
UNIPROTKB|E1BZU3 - symbol:RBM6 "Uncharacterized protein" ... 129 5.5e-09 4
UNIPROTKB|E1C875 - symbol:TRA2A "Uncharacterized protein"... 145 6.4e-09 1
GENEDB_PFALCIPARUM|MAL13P1.120 - symbol:MAL13P1.120 "spli... 112 6.7e-09 3
UNIPROTKB|Q8IE99 - symbol:MAL13P1.120 "Splicing factor, p... 112 6.7e-09 3
UNIPROTKB|I3L834 - symbol:GPATCH2 "Uncharacterized protei... 144 8.1e-09 1
UNIPROTKB|F1SMV6 - symbol:LOC100737174 "Uncharacterized p... 164 8.4e-09 1
UNIPROTKB|H7BY16 - symbol:NCL "Nucleolin" species:9606 "H... 161 9.7e-09 1
WB|WBGene00013224 - symbol:Y55D9A.2 species:6239 "Caenorh... 171 1.6e-08 2
UNIPROTKB|H9L0U4 - symbol:CIRBP "Uncharacterized protein"... 131 2.3e-08 2
UNIPROTKB|H9L3B3 - symbol:CIRBP "Uncharacterized protein"... 131 2.3e-08 2
UNIPROTKB|E2R6G2 - symbol:CIRBP "Uncharacterized protein"... 132 2.9e-08 2
UNIPROTKB|K7EMY9 - symbol:CIRBP "Cold-inducible RNA-bindi... 132 2.9e-08 2
UNIPROTKB|K7EPM4 - symbol:CIRBP "Cold-inducible RNA-bindi... 132 2.9e-08 2
UNIPROTKB|Q14011 - symbol:CIRBP "Cold-inducible RNA-bindi... 132 2.9e-08 2
UNIPROTKB|Q5RF83 - symbol:CIRBP "Cold-inducible RNA-bindi... 132 2.9e-08 2
UNIPROTKB|I3LRH2 - symbol:LOC100737210 "Uncharacterized p... 164 3.0e-08 1
UNIPROTKB|I3L5X7 - symbol:RBM3 "Uncharacterized protein" ... 138 3.6e-08 1
UNIPROTKB|Q9DED4 - symbol:cirbp-b "Cold-inducible RNA-bin... 138 3.6e-08 1
FB|FBgn0264270 - symbol:Sxl "Sex lethal" species:7227 "Dr... 108 3.7e-08 2
UNIPROTKB|G3MYJ0 - symbol:G3MYJ0 "Uncharacterized protein... 162 3.9e-08 1
UNIPROTKB|G3MXT4 - symbol:G3MXT4 "Uncharacterized protein... 162 4.0e-08 1
UNIPROTKB|G3X7M4 - symbol:G3X7M4 "Uncharacterized protein... 162 4.0e-08 1
MGI|MGI:1099460 - symbol:Rbm3 "RNA binding motif protein ... 137 4.6e-08 1
UNIPROTKB|G3V6P6 - symbol:Rbm3 "Putative RNA-binding prot... 137 4.6e-08 1
MGI|MGI:97286 - symbol:Ncl "nucleolin" species:10090 "Mus... 162 4.7e-08 1
RGD|3153 - symbol:Ncl "nucleolin" species:10116 "Rattus n... 162 4.8e-08 1
UNIPROTKB|P08199 - symbol:NCL "Nucleolin" species:10036 "... 162 4.8e-08 1
UNIPROTKB|Q5U328 - symbol:Ncl "Nucleolin, isoform CRA_c" ... 162 4.8e-08 1
UNIPROTKB|E1B8K6 - symbol:NCL "Uncharacterized protein" s... 162 4.9e-08 1
UNIPROTKB|F6RBQ9 - symbol:F6RBQ9 "Uncharacterized protein... 136 5.8e-08 1
UNIPROTKB|P19338 - symbol:NCL "Nucleolin" species:9606 "H... 161 6.1e-08 1
UNIPROTKB|Q9DDU8 - symbol:TRA2B "Uncharacterized protein"... 156 6.1e-08 2
UNIPROTKB|Q4R4J7 - symbol:NCL "Nucleolin" species:9541 "M... 161 6.1e-08 1
UNIPROTKB|Q5RF26 - symbol:NCL "Nucleolin" species:9601 "P... 161 6.1e-08 1
UNIPROTKB|F1Q0B0 - symbol:NCL "Uncharacterized protein" s... 161 6.2e-08 1
UNIPROTKB|F1N3T3 - symbol:F1N3T3 "Uncharacterized protein... 113 6.8e-08 2
UNIPROTKB|E9PTI5 - symbol:E9PTI5 "Uncharacterized protein... 158 9.1e-08 1
UNIPROTKB|I3LBN9 - symbol:TRA2B "Uncharacterized protein"... 152 1.1e-07 2
UNIPROTKB|Q9PTX2 - symbol:cirbp "Cold-inducible RNA-bindi... 133 1.2e-07 1
RGD|620145 - symbol:Rbm3 "RNA binding motif (RNP1, RRM) p... 133 1.2e-07 1
UNIPROTKB|P78332 - symbol:RBM6 "RNA-binding protein 6" sp... 96 1.4e-07 6
UNIPROTKB|E2R4B2 - symbol:TRA2A "Uncharacterized protein"... 150 1.4e-07 1
UNIPROTKB|Q3ZBT6 - symbol:TRA2B "Transformer-2 protein ho... 152 1.4e-07 2
UNIPROTKB|E2RD37 - symbol:TRA2B "Uncharacterized protein"... 152 1.4e-07 2
UNIPROTKB|P62995 - symbol:TRA2B "Transformer-2 protein ho... 152 1.4e-07 2
MGI|MGI:106016 - symbol:Tra2b "transformer 2 beta homolog... 152 1.4e-07 2
RGD|619886 - symbol:Tra2b "transformer 2 beta homolog (Dr... 152 1.4e-07 2
UNIPROTKB|Q06AA6 - symbol:TRA2A "Uncharacterized protein"... 150 1.4e-07 1
UNIPROTKB|Q2KJ71 - symbol:TRA2A "Transformer 2 alpha homo... 150 1.4e-07 1
MGI|MGI:1933972 - symbol:Tra2a "transformer 2 alpha homol... 150 1.4e-07 1
UNIPROTKB|Q13595 - symbol:TRA2A "Transformer-2 protein ho... 150 1.4e-07 1
RGD|1562563 - symbol:Tra2a "transformer 2 alpha homolog (... 150 1.4e-07 1
UNIPROTKB|K7ER40 - symbol:CIRBP "Cold-inducible RNA-bindi... 132 1.6e-07 1
UNIPROTKB|K7EJV5 - symbol:CIRBP "Cold-inducible RNA-bindi... 132 1.6e-07 1
WARNING: Descriptions of 497 database sequences were not reported due to the
limiting value of parameter V = 100.
>UNIPROTKB|A0JMV4 [details] [associations]
symbol:rbm5-a "RNA-binding protein 5-A" species:8355
"Xenopus laevis" [GO:0000245 "spliceosomal complex assembly"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0043065
"positive regulation of apoptotic process" evidence=ISS]
InterPro:IPR000467 InterPro:IPR000504 InterPro:IPR001876
InterPro:IPR007087 InterPro:IPR012677 InterPro:IPR015880
Pfam:PF00641 Pfam:PF01585 PROSITE:PS00028 PROSITE:PS01358
PROSITE:PS50102 PROSITE:PS50157 PROSITE:PS50174 PROSITE:PS50199
SMART:SM00355 SMART:SM00360 SMART:SM00443 SMART:SM00547
GO:GO:0005634 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0043065
GO:GO:0000245 GO:GO:0000381 KO:K13094 EMBL:BC126019
RefSeq:NP_001090434.1 UniGene:Xl.7259 GeneID:779346 KEGG:xla:779346
CTD:779346 Xenbase:XB-GENE-494991 Uniprot:A0JMV4
Length = 833
Score = 202 (76.2 bits), Expect = 4.8e-46, Sum P(6) = 4.8e-46
Identities = 49/118 (41%), Positives = 66/118 (55%)
Query: 931 RDFALKKGSVDSMPFPPGVGGRGFTADSVQSYEVITADKAIDENNVGNRMLRSMGWHEGL 990
RD A ++ +P PP + F A +V +YE T D ID +N+GN+ML++MGW EG
Sbjct: 721 RDRAAERRVKYGIPEPPEPKRKRF-APTVVNYEQPTKD-GIDNSNIGNKMLQAMGWKEGS 778
Query: 991 GLGKDGSGMIEPVQAQAMDSRAGLGSQQKKVDPSLEVQAGDSYKTLIHKKALARFREM 1048
GLG+ G+ P+QAQ AGLG++ S V DSYK + K ARF EM
Sbjct: 779 GLGRKSQGITAPIQAQVRMRGAGLGAKGS----SYGVNTSDSYKDAVRKAMFARFSEM 832
Score = 175 (66.7 bits), Expect = 4.8e-46, Sum P(6) = 4.8e-46
Identities = 44/156 (28%), Positives = 77/156 (49%)
Query: 378 QESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPL 437
Q + +SN + DW+C CG NF RR CF+C A+ + A SS
Sbjct: 171 QGKTIAMHYSNPRPKFE-DWLCNKCGLYNFRRRLKCFRCGAAKAESDMEAPSGSSEAPQS 229
Query: 438 GKKGSDTG-PTHVLVVRGLDEYADEEMLRYEFSKHAP--IKDLRLVRDKFTHVSRGFAFL 494
SD+G + +++R + + + + + + + ++RL++DK T +RGFAF+
Sbjct: 230 ADYYSDSGYVSSAIILRNIGPHTVVDSILSALAPYVSLVVSNIRLIKDKQTQQNRGFAFV 289
Query: 495 HFHSVEDASKALEA--TNGTTLEKNGQILRVAYAKS 528
S +AS+ L+ T L+ +G+ + V +AKS
Sbjct: 290 QLPSALEASQLLQILQTLHPPLKIDGKTIGVDFAKS 325
Score = 146 (56.5 bits), Expect = 4.8e-46, Sum P(6) = 4.8e-46
Identities = 28/77 (36%), Positives = 42/77 (54%)
Query: 598 SGFVWDEASGYYYDAASGFYYDGNTGLYYDGNSGIWYSYDQQTQQYIPCTD-QNDNKTSG 656
S + +DE+SGYYYD +G YYD N+ YY+ + + +D + Q Y+P D + T
Sbjct: 475 STYQYDESSGYYYDPQTGLYYDPNSQYYYNSLTQQYLYWDGEKQTYLPAADGAGQSGTQP 534
Query: 657 NGSEPSKQVDGGSKNRK 673
NG+ P +G K K
Sbjct: 535 NGANPGTSKEGKEKKEK 551
Score = 106 (42.4 bits), Expect = 4.8e-46, Sum P(6) = 4.8e-46
Identities = 27/83 (32%), Positives = 49/83 (59%)
Query: 286 SGTIVVKGLSQKTTEEDLYQILAEW-GPL-RHVRVIKERNSGVSRGFAFIDFPSVGAARA 343
S TI+++GL E D+ +++ + GP VR++K R +G+SRGFAF++F + + +
Sbjct: 101 SKTIMLRGLPININENDIRELVESFEGPQPADVRLMK-RKTGLSRGFAFVEFYHLQDSTS 159
Query: 344 MMDRIGDDGLVVDGRKLFFEYSS 366
M+ LV+ G+ + YS+
Sbjct: 160 WMEA-NQKKLVIQGKTIAMHYSN 181
Score = 88 (36.0 bits), Expect = 2.3e-30, Sum P(5) = 2.3e-30
Identities = 27/87 (31%), Positives = 48/87 (55%)
Query: 443 DTGPTHVLVVRGLDEYADEEMLRY---EFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSV 499
D + +++RGL +E +R F P D+RL++ K T +SRGFAF+ F+ +
Sbjct: 97 DEKESKTIMLRGLPININENDIRELVESFEGPQPA-DVRLMKRK-TGLSRGFAFVEFYHL 154
Query: 500 EDASKALEATNGTTLEKNGQILRVAYA 526
+D++ +EA N L G+ + + Y+
Sbjct: 155 QDSTSWMEA-NQKKLVIQGKTIAMHYS 180
Score = 83 (34.3 bits), Expect = 7.5e-30, Sum P(5) = 7.5e-30
Identities = 20/84 (23%), Positives = 44/84 (52%)
Query: 286 SGTIVVKGLSQKTTEEDLYQILAEWGPL--RHVRVIKERNSGVSRGFAFIDFPSVGAARA 343
S I+++ + T + + LA + L ++R+IK++ + +RGFAF+ PS A
Sbjct: 240 SSAIILRNIGPHTVVDSILSALAPYVSLVVSNIRLIKDKQTQQNRGFAFVQLPSALEASQ 299
Query: 344 MMDRIGD--DGLVVDGRKLFFEYS 365
++ + L +DG+ + +++
Sbjct: 300 LLQILQTLHPPLKIDGKTIGVDFA 323
Score = 61 (26.5 bits), Expect = 4.8e-46, Sum P(6) = 4.8e-46
Identities = 14/23 (60%), Positives = 17/23 (73%)
Query: 890 ATQKEQPQTTYRDRAAERRSLYG 912
A Q E+ ++ YRDRAAERR YG
Sbjct: 711 AEQTER-ESKYRDRAAERRVKYG 732
Score = 60 (26.2 bits), Expect = 4.8e-46, Sum P(6) = 4.8e-46
Identities = 23/84 (27%), Positives = 33/84 (39%)
Query: 26 EPNFRVGGSYDERRFLDERYSRDNIYPRNAFQRENYPPPPVGLWPQSRRRNY-EEDYSLD 84
E + R G +D D+R RDN R + + Y + R + E D D
Sbjct: 11 ERSGRYGSGFDR----DDRDDRDNRSRRRDSEYKRYRDERSDRYDDYRDYDSPERDRMRD 66
Query: 85 RESRRHEKPYIDSYHEMDAYCGHE 108
RE R ++ D YH Y H+
Sbjct: 67 RERRNSDRSE-DGYHSDGDYMDHD 89
Score = 54 (24.1 bits), Expect = 2.0e-45, Sum P(6) = 2.0e-45
Identities = 15/57 (26%), Positives = 24/57 (42%)
Query: 84 DRESRRHEKPYIDSYHEMDAYCGHEIDSFPE-----FDKFRDGYRNIENYRDHGFER 135
D E +R+ D Y + Y E D + D+ DGY + +Y DH + +
Sbjct: 36 DSEYKRYRDERSDRYDDYRDYDSPERDRMRDRERRNSDRSEDGYHSDGDYMDHDYRQ 92
Score = 45 (20.9 bits), Expect = 9.0e-36, Sum P(6) = 9.0e-36
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 747 QSASADDRPGPAGQASKTKFKSDSAATKENNTFSSGAGAPTAI 789
QS +PG Q+S + + +AT + T + A AP AI
Sbjct: 423 QSPQMYQQPGSPTQSSTSTVAA--SATPASGTSAEEAAAPNAI 463
Score = 44 (20.5 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 905 AERRSLYGSSFSAGDDLPDVGSGDSNRDFALKK 937
+ER YGS F DD D + RD K+
Sbjct: 10 SERSGRYGSGFDR-DDRDDRDNRSRRRDSEYKR 41
>UNIPROTKB|A4IGK4 [details] [associations]
symbol:rbm5 "RNA-binding protein 5" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0000245 "spliceosomal complex assembly"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0043065
"positive regulation of apoptotic process" evidence=ISS]
InterPro:IPR000467 InterPro:IPR000504 InterPro:IPR001876
InterPro:IPR007087 InterPro:IPR012677 InterPro:IPR015880
Pfam:PF00641 Pfam:PF01585 PROSITE:PS00028 PROSITE:PS01358
PROSITE:PS50102 PROSITE:PS50157 PROSITE:PS50174 PROSITE:PS50199
SMART:SM00355 SMART:SM00360 SMART:SM00443 SMART:SM00547
GO:GO:0005634 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0043065
GeneTree:ENSGT00510000046476 GO:GO:0000245 GO:GO:0000381
eggNOG:NOG290849 KO:K13094 HOGENOM:HOG000046285 CTD:10181
OMA:TADSYKD EMBL:CR855749 EMBL:BC135140 RefSeq:NP_001017278.1
UniGene:Str.11018 ProteinModelPortal:A4IGK4 STRING:A4IGK4
Ensembl:ENSXETT00000015911 GeneID:550032 KEGG:xtr:550032
Xenbase:XB-GENE-494987 Bgee:A4IGK4 Uniprot:A4IGK4
Length = 838
Score = 199 (75.1 bits), Expect = 1.1e-45, Sum P(6) = 1.1e-45
Identities = 48/118 (40%), Positives = 65/118 (55%)
Query: 931 RDFALKKGSVDSMPFPPGVGGRGFTADSVQSYEVITADKAIDENNVGNRMLRSMGWHEGL 990
RD A ++ +P PP + F +V +YE T D ID +N+GN+ML++MGW EG
Sbjct: 726 RDRAAERREKYGIPEPPEPKRKRFDP-TVVNYEQPTKD-GIDNSNIGNKMLQAMGWKEGS 783
Query: 991 GLGKDGSGMIEPVQAQAMDSRAGLGSQQKKVDPSLEVQAGDSYKTLIHKKALARFREM 1048
GLG+ G+ P+QAQ AGLG++ S V DSYK + K ARF EM
Sbjct: 784 GLGRKSQGITAPIQAQVRMRGAGLGAKGS----SYGVNTSDSYKDAVRKAMFARFSEM 837
Score = 172 (65.6 bits), Expect = 1.1e-45, Sum P(6) = 1.1e-45
Identities = 44/156 (28%), Positives = 78/156 (50%)
Query: 378 QESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPL 437
Q + +SN + DW+C CG NF RR CF+C A+ + A SS+
Sbjct: 172 QGKTIAMHYSNPRPKFE-DWLCNKCGLYNFRRRLKCFRCGAAKAESDLEAPSGSSDAPQS 230
Query: 438 GKKGSDTG-PTHVLVVRGLDEYADEEMLRYEFSKHAP--IKDLRLVRDKFTHVSRGFAFL 494
SD+G + +++R + + + + + + + ++RL++DK T +RGFAF+
Sbjct: 231 TDYYSDSGYVSSAIILRNIGPHTVVDSILSALAPYVSLVVSNIRLIKDKQTQQNRGFAFV 290
Query: 495 HFHSVEDASKALEA--TNGTTLEKNGQILRVAYAKS 528
S +AS+ L+ T L+ +G+ + V +AKS
Sbjct: 291 QLPSTLEASQLLQILQTLHPPLKIDGKTVGVDFAKS 326
Score = 136 (52.9 bits), Expect = 1.1e-45, Sum P(6) = 1.1e-45
Identities = 38/180 (21%), Positives = 68/180 (37%)
Query: 598 SGFVWDEASGYYYDAASGFYYDGNTGLYYDGNSGIWYSYDQQTQQYIPCTD-QNDNKTSG 656
S + +DE+SGYYYD +G YYD N+ YY+ + + +D + Q Y+P D +
Sbjct: 476 STYQYDESSGYYYDPQTGLYYDPNSQYYYNSLTQQYLYWDGEKQTYLPAADGAGQSGAQP 535
Query: 657 NGSEPSKQVDGGSKNRKVVISAPAATVSSVEKPASLPDAVQXXXXXXXXXXXXXXXXXXX 716
NG+ +G K K +E+ A + +
Sbjct: 536 NGANAGSSKEGKEKKEKPKSKTAQQIAKDMERWAKSLNKQKENFKNSFQPLSARDEERKE 595
Query: 717 XXXXXXXTIVANKKKLNNATMWKQWSHDNQQSASADDRPGPAGQASKTKFKSDSAATKEN 776
+ KK+ A + +Q+ D + ++ P +A + DS +E+
Sbjct: 596 SAAADAGFALFEKKQ--GALLERQFMPDMMMMVNTEEEEKPPNKALVAAYSGDSDNEEES 653
Score = 107 (42.7 bits), Expect = 1.1e-45, Sum P(6) = 1.1e-45
Identities = 28/83 (33%), Positives = 48/83 (57%)
Query: 286 SGTIVVKGLSQKTTEEDLYQILAEW-GPL-RHVRVIKERNSGVSRGFAFIDFPSVGAARA 343
S TI+++GL E D+ +++ + GP VR++K R +G+SRGFAF++F + A
Sbjct: 102 SKTIMLRGLPININENDIRELVESFEGPQPADVRLMK-RKTGLSRGFAFVEFYHLQDATR 160
Query: 344 MMDRIGDDGLVVDGRKLFFEYSS 366
M+ LV+ G+ + YS+
Sbjct: 161 WMEA-NQKKLVIQGKTIAMHYSN 182
Score = 93 (37.8 bits), Expect = 1.0e-30, Sum P(5) = 1.0e-30
Identities = 28/87 (32%), Positives = 49/87 (56%)
Query: 443 DTGPTHVLVVRGLDEYADEEMLRY---EFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSV 499
D + +++RGL +E +R F P D+RL++ K T +SRGFAF+ F+ +
Sbjct: 98 DEKESKTIMLRGLPININENDIRELVESFEGPQPA-DVRLMKRK-TGLSRGFAFVEFYHL 155
Query: 500 EDASKALEATNGTTLEKNGQILRVAYA 526
+DA++ +EA N L G+ + + Y+
Sbjct: 156 QDATRWMEA-NQKKLVIQGKTIAMHYS 181
Score = 82 (33.9 bits), Expect = 1.3e-29, Sum P(5) = 1.3e-29
Identities = 20/84 (23%), Positives = 44/84 (52%)
Query: 286 SGTIVVKGLSQKTTEEDLYQILAEWGPL--RHVRVIKERNSGVSRGFAFIDFPSVGAARA 343
S I+++ + T + + LA + L ++R+IK++ + +RGFAF+ PS A
Sbjct: 241 SSAIILRNIGPHTVVDSILSALAPYVSLVVSNIRLIKDKQTQQNRGFAFVQLPSTLEASQ 300
Query: 344 MMDRIGD--DGLVVDGRKLFFEYS 365
++ + L +DG+ + +++
Sbjct: 301 LLQILQTLHPPLKIDGKTVGVDFA 324
Score = 69 (29.3 bits), Expect = 1.1e-45, Sum P(6) = 1.1e-45
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 879 KRRFSEMPLPPATQKEQPQTTYRDRAAERRSLYG 912
+ + SE L KE+ + YRDRAAERR YG
Sbjct: 705 RSKMSEQELEALELKER-EAKYRDRAAERREKYG 737
Score = 64 (27.6 bits), Expect = 1.1e-45, Sum P(6) = 1.1e-45
Identities = 30/101 (29%), Positives = 46/101 (45%)
Query: 42 DERYSRDNIYPR--NAFQRENYPPPPVGLWPQSRRRNYEEDYSLDRESRRHEKPYIDSYH 99
D+R SR R +AF R++ +SRRR+ E Y R+ R E+ Y D Y
Sbjct: 4 DKRVSRSERSGRYGSAFDRDDRDDRDT----RSRRRDSE--YKRYRDERSSER-Y-DDYR 55
Query: 100 EMDAYCGHEIDSFPE-----FDKFRDGYRNIENYRDHGFER 135
+ D+ E D + D+ DGY + +Y DH + +
Sbjct: 56 DYDS---PERDRMRDRERRNSDRSEDGYHSDGDYMDHDYRQ 93
Score = 45 (20.9 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 905 AERRSLYGSSFSAGDDLPDVGSGDSNRDFALKK 937
+ER YGS+F DD D + RD K+
Sbjct: 10 SERSGRYGSAFDR-DDRDDRDTRSRRRDSEYKR 41
>UNIPROTKB|Q6DDU9 [details] [associations]
symbol:rbm5-b "RNA-binding protein 5-B" species:8355
"Xenopus laevis" [GO:0000245 "spliceosomal complex assembly"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0043065
"positive regulation of apoptotic process" evidence=ISS]
InterPro:IPR000467 InterPro:IPR000504 InterPro:IPR001876
InterPro:IPR012677 Pfam:PF00641 Pfam:PF01585 PROSITE:PS01358
PROSITE:PS50102 PROSITE:PS50174 PROSITE:PS50199 SMART:SM00360
SMART:SM00443 SMART:SM00547 GO:GO:0005634 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0043065 GO:GO:0000245 GO:GO:0000381 KO:K13094
EMBL:BC077408 RefSeq:NP_001086761.1 UniGene:Xl.19852 HSSP:O95218
ProteinModelPortal:Q6DDU9 GeneID:446596 KEGG:xla:446596 CTD:446596
Xenbase:XB-GENE-6256678 Uniprot:Q6DDU9
Length = 749
Score = 198 (74.8 bits), Expect = 1.4e-45, Sum P(6) = 1.4e-45
Identities = 48/118 (40%), Positives = 65/118 (55%)
Query: 931 RDFALKKGSVDSMPFPPGVGGRGFTADSVQSYEVITADKAIDENNVGNRMLRSMGWHEGL 990
RD A ++ +P PP + F +V +YE T D ID +N+GN+ML++MGW EG
Sbjct: 637 RDRAAERREKYGIPEPPEPKRKRFDP-TVVNYEQPTKD-GIDNSNIGNKMLQAMGWKEGS 694
Query: 991 GLGKDGSGMIEPVQAQAMDSRAGLGSQQKKVDPSLEVQAGDSYKTLIHKKALARFREM 1048
GLG+ G+ P+QAQ AGLG++ S V DSYK + K ARF EM
Sbjct: 695 GLGRKSQGITAPIQAQVRMRGAGLGAKGS----SYGVNTSDSYKDAVKKAMFARFSEM 748
Score = 175 (66.7 bits), Expect = 1.4e-45, Sum P(6) = 1.4e-45
Identities = 44/156 (28%), Positives = 77/156 (49%)
Query: 378 QESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPL 437
Q + +SN + DW+C CG NF RR CF+C A+ + A SS
Sbjct: 171 QGKTIAMHYSNPRPKFE-DWLCNKCGLYNFRRRLKCFRCGAAKAESDMEAPSGSSETPQS 229
Query: 438 GKKGSDTG-PTHVLVVRGLDEYADEEMLRYEFSKHAP--IKDLRLVRDKFTHVSRGFAFL 494
SD+G + +++R + + + + + + + ++RL++DK T +RGFAF+
Sbjct: 230 ADYYSDSGYVSSAIILRNIGPHTVVDSILSALAPYVSLVVSNIRLIKDKQTQQNRGFAFV 289
Query: 495 HFHSVEDASKALEA--TNGTTLEKNGQILRVAYAKS 528
S +AS+ L+ T L+ +G+ + V +AKS
Sbjct: 290 QLPSALEASQLLQILQTLHPPLKIDGKTIGVDFAKS 325
Score = 141 (54.7 bits), Expect = 1.4e-45, Sum P(6) = 1.4e-45
Identities = 27/77 (35%), Positives = 41/77 (53%)
Query: 598 SGFVWDEASGYYYDAASGFYYDGNTGLYYDGNSGIWYSYDQQTQQYIPCTD-QNDNKTSG 656
S + +DE+SGYYYD +G YYD N+ YY+ + + +D + Q Y+P D +
Sbjct: 473 STYQYDESSGYYYDPQTGLYYDPNSQYYYNSLTQQYLYWDGEKQTYLPAADGTGQSGAQP 532
Query: 657 NGSEPSKQVDGGSKNRK 673
NG+ P +G K K
Sbjct: 533 NGANPGTSKEGKEKKEK 549
Score = 107 (42.7 bits), Expect = 1.4e-45, Sum P(6) = 1.4e-45
Identities = 28/83 (33%), Positives = 48/83 (57%)
Query: 286 SGTIVVKGLSQKTTEEDLYQILAEW-GPL-RHVRVIKERNSGVSRGFAFIDFPSVGAARA 343
S TI+++GL E D+ +++ + GP VR++K R +G+SRGFAF++F + A
Sbjct: 101 SKTIMLRGLPININENDIRELVESFEGPQPADVRLMK-RKTGLSRGFAFVEFYHLQDATR 159
Query: 344 MMDRIGDDGLVVDGRKLFFEYSS 366
M+ LV+ G+ + YS+
Sbjct: 160 WMEA-NQKKLVIQGKTIAMHYSN 181
Score = 93 (37.8 bits), Expect = 3.0e-30, Sum P(5) = 3.0e-30
Identities = 28/87 (32%), Positives = 49/87 (56%)
Query: 443 DTGPTHVLVVRGLDEYADEEMLRY---EFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSV 499
D + +++RGL +E +R F P D+RL++ K T +SRGFAF+ F+ +
Sbjct: 97 DEKESKTIMLRGLPININENDIRELVESFEGPQPA-DVRLMKRK-TGLSRGFAFVEFYHL 154
Query: 500 EDASKALEATNGTTLEKNGQILRVAYA 526
+DA++ +EA N L G+ + + Y+
Sbjct: 155 QDATRWMEA-NQKKLVIQGKTIAMHYS 180
Score = 83 (34.3 bits), Expect = 3.1e-29, Sum P(5) = 3.1e-29
Identities = 20/84 (23%), Positives = 44/84 (52%)
Query: 286 SGTIVVKGLSQKTTEEDLYQILAEWGPL--RHVRVIKERNSGVSRGFAFIDFPSVGAARA 343
S I+++ + T + + LA + L ++R+IK++ + +RGFAF+ PS A
Sbjct: 240 SSAIILRNIGPHTVVDSILSALAPYVSLVVSNIRLIKDKQTQQNRGFAFVQLPSALEASQ 299
Query: 344 MMDRIGD--DGLVVDGRKLFFEYS 365
++ + L +DG+ + +++
Sbjct: 300 LLQILQTLHPPLKIDGKTIGVDFA 323
Score = 68 (29.0 bits), Expect = 1.4e-45, Sum P(6) = 1.4e-45
Identities = 14/23 (60%), Positives = 17/23 (73%)
Query: 891 TQKEQPQTT-YRDRAAERRSLYG 912
T++E+P YRDRAAERR YG
Sbjct: 626 TEEEKPPNAKYRDRAAERREKYG 648
Score = 53 (23.7 bits), Expect = 1.4e-45, Sum P(6) = 1.4e-45
Identities = 26/98 (26%), Positives = 43/98 (43%)
Query: 42 DERYSRDNIYPR--NAFQRENYPPPPVGLWPQSRRRNYEEDYSLDRESRRHEKPYIDSYH 99
D+R SR R +AF R++ +SRRR+ E Y R+ R + Y D Y
Sbjct: 4 DKRVSRSERSGRYGSAFDRDDRDDRD----SRSRRRDSE--YKRYRDERNDQ--Y-DDYR 54
Query: 100 EMDAYCGHEIDSFPE--FDKFRDGYRNIENYRDHGFER 135
+ ++ + D+ DGY + +Y DH + +
Sbjct: 55 DYESPERERMRDRERRNSDRSEDGYHSDGDYMDHDYRQ 92
Score = 52 (23.4 bits), Expect = 1.7e-45, Sum P(6) = 1.7e-45
Identities = 21/84 (25%), Positives = 34/84 (40%)
Query: 26 EPNFRVGGSYDERRFLDERYSRDNIYPRNAFQRENYPPPPVGLWPQSRR-RNYEEDYSLD 84
E + R G ++D D+R RD+ R + + Y + R + E + D
Sbjct: 11 ERSGRYGSAFDR----DDRDDRDSRSRRRDSEYKRYRDERNDQYDDYRDYESPERERMRD 66
Query: 85 RESRRHEKPYIDSYHEMDAYCGHE 108
RE R ++ D YH Y H+
Sbjct: 67 RERRNSDRSE-DGYHSDGDYMDHD 89
Score = 48 (22.0 bits), Expect = 9.9e-12, Sum P(2) = 9.9e-12
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 905 AERRSLYGSSFSAGDDLPDVGSGDSNRDFALKK 937
+ER YGS+F DD D S RD K+
Sbjct: 10 SERSGRYGSAFDR-DDRDDRDSRSRRRDSEYKR 41
Score = 37 (18.1 bits), Expect = 5.1e-35, Sum P(6) = 5.1e-35
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 747 QSASADDRPGPAGQASKTKFKSDSAATKENNTFSSGAGAPTAIPQAV 793
QS +PG Q+ + + ++ T + T + A PTAI V
Sbjct: 422 QSPQMYQQPGSPTQSGTS---TAASTTPASTTSTEEATTPTAIVPGV 465
>MGI|MGI:1933204 [details] [associations]
symbol:Rbm5 "RNA binding motif protein 5" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000245 "spliceosomal complex assembly" evidence=ISO]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=ISO] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0043065 "positive regulation of
apoptotic process" evidence=ISO] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR000467 InterPro:IPR000504
InterPro:IPR001876 InterPro:IPR007087 InterPro:IPR012677
InterPro:IPR015880 Pfam:PF00641 Pfam:PF01585 PROSITE:PS00028
PROSITE:PS01358 PROSITE:PS50102 PROSITE:PS50157 PROSITE:PS50174
PROSITE:PS50199 SMART:SM00355 SMART:SM00360 SMART:SM00443
SMART:SM00547 MGI:MGI:1933204 GO:GO:0005634 GO:GO:0006915
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0043065
GeneTree:ENSGT00510000046476 PDB:2CLV PDB:2OL3 PDBsum:2CLV
PDBsum:2OL3 GO:GO:0000245 GO:GO:0000381 eggNOG:NOG290849
HOVERGEN:HBG000318 KO:K13094 HOGENOM:HOG000046285 CTD:10181
OMA:TADSYKD OrthoDB:EOG4VT5WV EMBL:AJ309168 EMBL:AK134183
EMBL:AK146880 EMBL:BC003988 EMBL:BC023854 EMBL:BC031899
EMBL:BC043058 EMBL:BC054729 IPI:IPI00130160 IPI:IPI00798508
RefSeq:NP_683732.1 UniGene:Mm.259197 ProteinModelPortal:Q91YE7
SMR:Q91YE7 STRING:Q91YE7 PhosphoSite:Q91YE7 PaxDb:Q91YE7
PRIDE:Q91YE7 Ensembl:ENSMUST00000035199 GeneID:83486 KEGG:mmu:83486
UCSC:uc009rmv.2 UCSC:uc009rmw.2 InParanoid:Q91YE7
EvolutionaryTrace:Q91YE7 NextBio:350596 Bgee:Q91YE7 CleanEx:MM_RBM5
Genevestigator:Q91YE7 GermOnline:ENSMUSG00000032580 Uniprot:Q91YE7
Length = 815
Score = 185 (70.2 bits), Expect = 1.2e-42, Sum P(6) = 1.2e-42
Identities = 46/119 (38%), Positives = 66/119 (55%)
Query: 931 RDFALKKGSVDSMPFPPGVGGRG-FTADSVQSYEVITADKAIDENNVGNRMLRSMGWHEG 989
RD A ++ +P PP + F A +V +YE T D ID +N+GN+ML++MGW EG
Sbjct: 702 RDRAAERREKYGIPEPPEPKRKKQFDAGTV-NYEQPTKD-GIDHSNIGNKMLQAMGWREG 759
Query: 990 LGLGKDGSGMIEPVQAQAMDSRAGLGSQQKKVDPSLEVQAGDSYKTLIHKKALARFREM 1048
GLG+ G+ P++AQ AGLG++ + + DSYK + K ARF EM
Sbjct: 760 SGLGRKCQGITAPIEAQVRLKGAGLGAKGS----AYGLSGADSYKDAVRKAMFARFTEM 814
Score = 154 (59.3 bits), Expect = 1.2e-42, Sum P(6) = 1.2e-42
Identities = 45/159 (28%), Positives = 77/159 (48%)
Query: 377 GQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTD---DAPPAEMNSSN 433
G+ AM +SN + DW+C C NF +R CF+C + D + PP S+
Sbjct: 168 GKHIAM--HYSNPRPKFE-DWLCNKCCLNNFRKRLKCFRCGADKFDSEQEVPPGTTESAQ 224
Query: 434 PIPLGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAP--IKDLRLVRDKFTHVSRGF 491
+ DT +++R + + + + S +A + ++RL++DK T +RGF
Sbjct: 225 SVDYY---CDT-----IILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGF 276
Query: 492 AFLHFHSVEDASKALEATNGT--TLEKNGQILRVAYAKS 528
AF+ S DAS+ L+ L+ +G+ + V +AKS
Sbjct: 277 AFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAKS 315
Score = 131 (51.2 bits), Expect = 1.2e-42, Sum P(6) = 1.2e-42
Identities = 26/76 (34%), Positives = 44/76 (57%)
Query: 598 SGFVWDEASGYYYDAASGFYYDGNTGLYYDGNSGIWYSYDQQTQQYIPCTDQNDNKTSGN 657
S + +DE+SGYYYD +G YYD N+ YY+ + + +D + + Y+P + + N+ +G
Sbjct: 460 STYQYDESSGYYYDPTTGLYYDPNSQYYYNSLTQQYLYWDGEKETYVPAAEASSNQQTGL 519
Query: 658 GSEPSKQVDGGSKNRK 673
PS + +G K K
Sbjct: 520 ---PSTK-EGKEKKEK 531
Score = 116 (45.9 bits), Expect = 1.2e-42, Sum P(6) = 1.2e-42
Identities = 30/83 (36%), Positives = 50/83 (60%)
Query: 286 SGTIVVKGLSQKTTEEDLYQILAEW-GPL-RHVRVIKERNSGVSRGFAFIDFPSVGAARA 343
S TI+++GL TE D+ +++ + GP VR++K R +GVSRGFAF++F + A +
Sbjct: 97 SKTIMLRGLPITITESDIREMMESFEGPQPADVRLMK-RKTGVSRGFAFVEFYHLQDATS 155
Query: 344 MMDRIGDDGLVVDGRKLFFEYSS 366
M+ LV+ G+ + YS+
Sbjct: 156 WMEA-NQKKLVIQGKHIAMHYSN 177
Score = 94 (38.1 bits), Expect = 9.7e-29, Sum P(5) = 9.7e-29
Identities = 30/88 (34%), Positives = 48/88 (54%)
Query: 442 SDTGPTHVLVVRGLDEYADEEMLRY---EFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHS 498
SD + +++RGL E +R F P D+RL++ K T VSRGFAF+ F+
Sbjct: 92 SDERESKTIMLRGLPITITESDIREMMESFEGPQPA-DVRLMKRK-TGVSRGFAFVEFYH 149
Query: 499 VEDASKALEATNGTTLEKNGQILRVAYA 526
++DA+ +EA N L G+ + + Y+
Sbjct: 150 LQDATSWMEA-NQKKLVIQGKHIAMHYS 176
Score = 78 (32.5 bits), Expect = 4.1e-27, Sum P(5) = 4.1e-27
Identities = 18/82 (21%), Positives = 44/82 (53%)
Query: 288 TIVVKGLSQKTTEEDLYQILAEWGPL--RHVRVIKERNSGVSRGFAFIDFPSVGAARAMM 345
TI+++ ++ T + + L+ + L ++R+IK++ + +RGFAF+ S A ++
Sbjct: 232 TIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLL 291
Query: 346 DRIGD--DGLVVDGRKLFFEYS 365
+ L +DG+ + +++
Sbjct: 292 QILQSLHPPLKIDGKTIGVDFA 313
Score = 68 (29.0 bits), Expect = 1.2e-42, Sum P(6) = 1.2e-42
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 879 KRRFSEMPLPPATQKEQPQTTYRDRAAERRSLYG 912
+ R SE L +E+ + YRDRAAERR YG
Sbjct: 681 RSRLSEQELEALELRER-EMKYRDRAAERREKYG 713
Score = 64 (27.6 bits), Expect = 1.2e-42, Sum P(6) = 1.2e-42
Identities = 18/63 (28%), Positives = 31/63 (49%)
Query: 71 QSRRRNYEEDYSLDRESRRHEKPYIDSYHEMDAYCGHEIDSFPEFDKFRDGYRNIENYRD 130
+SR R + DY + RR ++ Y D Y + D+ E + D+ DGY + +Y +
Sbjct: 29 ESRSRRRDSDYKRSSDDRRGDR-Y-DDYRDYDSP-ERERER-RNSDRSEDGYHSDGDYGE 84
Query: 131 HGF 133
H +
Sbjct: 85 HDY 87
Score = 38 (18.4 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 89 RHEKPYIDSYHE--MDAYCGHEIDSFPEFDKFRDGYRNIENYRDHGFERPPRFG 140
RH++ + H+ MD Y + S E + R ++ YRD ER ++G
Sbjct: 664 RHQQ--LSDLHKQNMDIYRRSRL-SEQELEALELREREMK-YRDRAAERREKYG 713
>UNIPROTKB|F1SPQ8 [details] [associations]
symbol:RBM5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043065 "positive regulation of apoptotic process"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000245 "spliceosomal
complex assembly" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000467 InterPro:IPR000504 InterPro:IPR001876
InterPro:IPR007087 InterPro:IPR012677 InterPro:IPR015880
Pfam:PF00641 Pfam:PF01585 PROSITE:PS01358 PROSITE:PS50102
PROSITE:PS50157 PROSITE:PS50174 PROSITE:PS50199 SMART:SM00355
SMART:SM00360 SMART:SM00443 SMART:SM00547 GO:GO:0005634
GO:GO:0000166 GO:GO:0008270 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0043065 GeneTree:ENSGT00510000046476 GO:GO:0000245
GO:GO:0000381 KO:K13094 CTD:10181 OMA:TADSYKD EMBL:CU861627
RefSeq:XP_003132269.3 UniGene:Ssc.49591 Ensembl:ENSSSCT00000012473
GeneID:100515237 KEGG:ssc:100515237 Uniprot:F1SPQ8
Length = 815
Score = 184 (69.8 bits), Expect = 1.5e-42, Sum P(6) = 1.5e-42
Identities = 46/119 (38%), Positives = 66/119 (55%)
Query: 931 RDFALKKGSVDSMPFPPGVGGRG-FTADSVQSYEVITADKAIDENNVGNRMLRSMGWHEG 989
RD A ++ +P PP + F A +V +YE T D ID +N+GN+ML++MGW EG
Sbjct: 702 RDRAAERREKYGIPEPPEPKRKKQFDAGTV-NYEQPTKD-GIDHSNIGNKMLQAMGWREG 759
Query: 990 LGLGKDGSGMIEPVQAQAMDSRAGLGSQQKKVDPSLEVQAGDSYKTLIHKKALARFREM 1048
GLG+ G+ P++AQ AGLG++ + + DSYK + K ARF EM
Sbjct: 760 SGLGRKCQGITAPIEAQVRLKGAGLGAKGS----AYGLTGADSYKDAVRKAMFARFTEM 814
Score = 151 (58.2 bits), Expect = 1.5e-42, Sum P(6) = 1.5e-42
Identities = 45/159 (28%), Positives = 76/159 (47%)
Query: 377 GQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTD---DAPPAEMNSSN 433
G+ AM +SN + DW+C C NF +R CF+C + D + PP S
Sbjct: 168 GKHIAM--HYSNPRPKFE-DWLCNKCCLNNFRKRLKCFRCGADKFDSEQEVPPGTTESVQ 224
Query: 434 PIPLGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAP--IKDLRLVRDKFTHVSRGF 491
+ DT +++R + + + + S +A + ++RL++DK T +RGF
Sbjct: 225 SVDYY---CDT-----IILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGF 276
Query: 492 AFLHFHSVEDASKALEATNGT--TLEKNGQILRVAYAKS 528
AF+ S DAS+ L+ L+ +G+ + V +AKS
Sbjct: 277 AFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAKS 315
Score = 134 (52.2 bits), Expect = 1.5e-42, Sum P(6) = 1.5e-42
Identities = 26/76 (34%), Positives = 44/76 (57%)
Query: 598 SGFVWDEASGYYYDAASGFYYDGNTGLYYDGNSGIWYSYDQQTQQYIPCTDQNDNKTSGN 657
S + +DE+SGYYYD +G YYD N+ YY+ + + +D + + Y+P + N ++ +G
Sbjct: 460 STYQYDESSGYYYDPTTGLYYDPNSQYYYNSLTQQYLYWDGEKETYVPAAESNSHQQTG- 518
Query: 658 GSEPSKQVDGGSKNRK 673
P+K+ G K K
Sbjct: 519 -LPPAKE--GKEKKEK 531
Score = 116 (45.9 bits), Expect = 1.5e-42, Sum P(6) = 1.5e-42
Identities = 30/83 (36%), Positives = 50/83 (60%)
Query: 286 SGTIVVKGLSQKTTEEDLYQILAEW-GPL-RHVRVIKERNSGVSRGFAFIDFPSVGAARA 343
S TI+++GL TE D+ +++ + GP VR++K R +GVSRGFAF++F + A +
Sbjct: 97 SKTIMLRGLPITITESDIREMMESFEGPQPADVRLMK-RKTGVSRGFAFVEFYHLQDATS 155
Query: 344 MMDRIGDDGLVVDGRKLFFEYSS 366
M+ LV+ G+ + YS+
Sbjct: 156 WMEA-NQKKLVIQGKHIAMHYSN 177
Score = 94 (38.1 bits), Expect = 6.2e-29, Sum P(5) = 6.2e-29
Identities = 30/88 (34%), Positives = 48/88 (54%)
Query: 442 SDTGPTHVLVVRGLDEYADEEMLRY---EFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHS 498
SD + +++RGL E +R F P D+RL++ K T VSRGFAF+ F+
Sbjct: 92 SDERESKTIMLRGLPITITESDIREMMESFEGPQPA-DVRLMKRK-TGVSRGFAFVEFYH 149
Query: 499 VEDASKALEATNGTTLEKNGQILRVAYA 526
++DA+ +EA N L G+ + + Y+
Sbjct: 150 LQDATSWMEA-NQKKLVIQGKHIAMHYS 176
Score = 78 (32.5 bits), Expect = 2.6e-27, Sum P(5) = 2.6e-27
Identities = 18/82 (21%), Positives = 44/82 (53%)
Query: 288 TIVVKGLSQKTTEEDLYQILAEWGPL--RHVRVIKERNSGVSRGFAFIDFPSVGAARAMM 345
TI+++ ++ T + + L+ + L ++R+IK++ + +RGFAF+ S A ++
Sbjct: 232 TIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLL 291
Query: 346 DRIGD--DGLVVDGRKLFFEYS 365
+ L +DG+ + +++
Sbjct: 292 QILQSLHPPLKIDGKTIGVDFA 313
Score = 68 (29.0 bits), Expect = 1.5e-42, Sum P(6) = 1.5e-42
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 879 KRRFSEMPLPPATQKEQPQTTYRDRAAERRSLYG 912
+ R SE L +E+ + YRDRAAERR YG
Sbjct: 681 RSRLSEQELEALELRER-EMKYRDRAAERREKYG 713
Score = 64 (27.6 bits), Expect = 1.5e-42, Sum P(6) = 1.5e-42
Identities = 18/63 (28%), Positives = 31/63 (49%)
Query: 71 QSRRRNYEEDYSLDRESRRHEKPYIDSYHEMDAYCGHEIDSFPEFDKFRDGYRNIENYRD 130
+SR R + DY + RR ++ Y D Y + D+ E + D+ DGY + +Y +
Sbjct: 29 ESRSRRRDSDYKRSSDDRRGDR-Y-DDYRDYDSP-ERERER-RNSDRSEDGYHSDGDYGE 84
Query: 131 HGF 133
H +
Sbjct: 85 HDY 87
Score = 47 (21.6 bits), Expect = 1.0e-33, Sum P(6) = 1.0e-33
Identities = 25/108 (23%), Positives = 41/108 (37%)
Query: 580 QEQRSDGDMVQKDGLAL-QSGFVWDEASGYYYDAASGFYYDGNTGLYYDGNSGIWYSYDQ 638
Q Q +G V L Q G+ + + Y D FY GL D +S +
Sbjct: 347 QSQSGEGGSVDYSYLQPGQDGYA--QYAQYSQDYQQ-FYQQQAGGLESDASSASGTAVTT 403
Query: 639 QTQQYIPCTDQNDNKTSGNGSEPSKQVDGGSKNRKVVISAPAATVSSV 686
+ + + Q N+TS P+++ + APAA+ + V
Sbjct: 404 TSAAVVSQSPQLYNQTSNTPGSPTEEAQPSTSTST---QAPAASPTGV 448
Score = 40 (19.1 bits), Expect = 3.1e-15, Sum P(4) = 3.1e-15
Identities = 14/51 (27%), Positives = 19/51 (37%)
Query: 913 SSFSAGDDLPDVGSGDSNRDFALKKGSVDSMPFPPGVGGRGFTADSVQSYE 963
S+FS S + + + GSVD PG G A Q Y+
Sbjct: 329 SAFSVASTAIAAAQWSSTQSQSGEGGSVDYSYLQPGQDGYAQYAQYSQDYQ 379
Score = 38 (18.4 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 89 RHEKPYIDSYHE--MDAYCGHEIDSFPEFDKFRDGYRNIENYRDHGFERPPRFG 140
RH++ + H+ MD Y + S E + R ++ YRD ER ++G
Sbjct: 664 RHQQ--LSDLHKQNMDIYRRSRL-SEQELEALELREREMK-YRDRAAERREKYG 713
>UNIPROTKB|P52756 [details] [associations]
symbol:RBM5 "RNA-binding protein 5" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000245 "spliceosomal complex assembly" evidence=IDA]
[GO:0008285 "negative regulation of cell proliferation"
evidence=TAS] [GO:0043065 "positive regulation of apoptotic
process" evidence=IDA;TAS] [GO:0005681 "spliceosomal complex"
evidence=TAS] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0003677
"DNA binding" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0006396 "RNA processing" evidence=TAS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005730 "nucleolus"
evidence=IDA] Reactome:REACT_71 InterPro:IPR000467
InterPro:IPR000504 InterPro:IPR001876 InterPro:IPR007087
InterPro:IPR012677 InterPro:IPR015880 Pfam:PF00641 Pfam:PF01585
PROSITE:PS00028 PROSITE:PS01358 PROSITE:PS50102 PROSITE:PS50157
PROSITE:PS50174 PROSITE:PS50199 SMART:SM00355 SMART:SM00360
SMART:SM00443 SMART:SM00547 GO:GO:0006915 GO:GO:0008285
GO:GO:0005654 GO:GO:0000166 EMBL:CH471055 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Reactome:REACT_1675 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0043065 GO:GO:0000245
GO:GO:0000381 eggNOG:NOG290849 HOVERGEN:HBG000318 KO:K13094
CTD:10181 OMA:TADSYKD OrthoDB:EOG4VT5WV EMBL:U23946 EMBL:AF091263
EMBL:AF103802 EMBL:AF107493 EMBL:AK297249 EMBL:AK297445
EMBL:AK302766 EMBL:AK314032 EMBL:U73168 IPI:IPI00005036
IPI:IPI00796867 IPI:IPI00927051 IPI:IPI00930333 IPI:IPI00930619
RefSeq:NP_005769.1 UniGene:Hs.439480 PDB:2LK0 PDB:2LK1 PDB:2LKZ
PDBsum:2LK0 PDBsum:2LK1 PDBsum:2LKZ ProteinModelPortal:P52756
SMR:P52756 DIP:DIP-47277N IntAct:P52756 MINT:MINT-1406668
STRING:P52756 PhosphoSite:P52756 DMDM:13124794 PaxDb:P52756
PRIDE:P52756 Ensembl:ENST00000347869 Ensembl:ENST00000469838
GeneID:10181 KEGG:hsa:10181 UCSC:uc003cyg.3 GeneCards:GC03P050101
HGNC:HGNC:9902 HPA:HPA017335 HPA:HPA018011 MIM:606884
neXtProt:NX_P52756 PharmGKB:PA34267 InParanoid:P52756
PhylomeDB:P52756 ChiTaRS:RBM5 GenomeRNAi:10181 NextBio:38542
ArrayExpress:P52756 Bgee:P52756 Genevestigator:P52756
GermOnline:ENSG00000003756 Uniprot:P52756
Length = 815
Score = 185 (70.2 bits), Expect = 1.9e-42, Sum P(6) = 1.9e-42
Identities = 46/119 (38%), Positives = 66/119 (55%)
Query: 931 RDFALKKGSVDSMPFPPGVGGRG-FTADSVQSYEVITADKAIDENNVGNRMLRSMGWHEG 989
RD A ++ +P PP + F A +V +YE T D ID +N+GN+ML++MGW EG
Sbjct: 702 RDRAAERREKYGIPEPPEPKRKKQFDAGTV-NYEQPTKD-GIDHSNIGNKMLQAMGWREG 759
Query: 990 LGLGKDGSGMIEPVQAQAMDSRAGLGSQQKKVDPSLEVQAGDSYKTLIHKKALARFREM 1048
GLG+ G+ P++AQ AGLG++ + + DSYK + K ARF EM
Sbjct: 760 SGLGRKCQGITAPIEAQVRLKGAGLGAKGS----AYGLSGADSYKDAVRKAMFARFTEM 814
Score = 151 (58.2 bits), Expect = 1.9e-42, Sum P(6) = 1.9e-42
Identities = 45/159 (28%), Positives = 76/159 (47%)
Query: 377 GQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTD---DAPPAEMNSSN 433
G+ AM +SN + DW+C C NF +R CF+C + D + PP S
Sbjct: 168 GKHIAM--HYSNPRPKFE-DWLCNKCCLNNFRKRLKCFRCGADKFDSEQEVPPGTTESVQ 224
Query: 434 PIPLGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAP--IKDLRLVRDKFTHVSRGF 491
+ DT +++R + + + + S +A + ++RL++DK T +RGF
Sbjct: 225 SVDYY---CDT-----IILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGF 276
Query: 492 AFLHFHSVEDASKALEATNGT--TLEKNGQILRVAYAKS 528
AF+ S DAS+ L+ L+ +G+ + V +AKS
Sbjct: 277 AFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAKS 315
Score = 132 (51.5 bits), Expect = 1.9e-42, Sum P(6) = 1.9e-42
Identities = 26/76 (34%), Positives = 44/76 (57%)
Query: 598 SGFVWDEASGYYYDAASGFYYDGNTGLYYDGNSGIWYSYDQQTQQYIPCTDQNDNKTSGN 657
S + +DE+SGYYYD +G YYD N+ YY+ + + +D + + Y+P + + ++ SG
Sbjct: 460 STYQYDESSGYYYDPTTGLYYDPNSQYYYNSLTQQYLYWDGEKETYVPAAESSSHQQSG- 518
Query: 658 GSEPSKQVDGGSKNRK 673
P+K+ G K K
Sbjct: 519 -LPPAKE--GKEKKEK 531
Score = 116 (45.9 bits), Expect = 1.9e-42, Sum P(6) = 1.9e-42
Identities = 30/83 (36%), Positives = 50/83 (60%)
Query: 286 SGTIVVKGLSQKTTEEDLYQILAEW-GPL-RHVRVIKERNSGVSRGFAFIDFPSVGAARA 343
S TI+++GL TE D+ +++ + GP VR++K R +GVSRGFAF++F + A +
Sbjct: 97 SKTIMLRGLPITITESDIREMMESFEGPQPADVRLMK-RKTGVSRGFAFVEFYHLQDATS 155
Query: 344 MMDRIGDDGLVVDGRKLFFEYSS 366
M+ LV+ G+ + YS+
Sbjct: 156 WMEA-NQKKLVIQGKHIAMHYSN 177
Score = 94 (38.1 bits), Expect = 7.7e-29, Sum P(5) = 7.7e-29
Identities = 30/88 (34%), Positives = 48/88 (54%)
Query: 442 SDTGPTHVLVVRGLDEYADEEMLRY---EFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHS 498
SD + +++RGL E +R F P D+RL++ K T VSRGFAF+ F+
Sbjct: 92 SDERESKTIMLRGLPITITESDIREMMESFEGPQPA-DVRLMKRK-TGVSRGFAFVEFYH 149
Query: 499 VEDASKALEATNGTTLEKNGQILRVAYA 526
++DA+ +EA N L G+ + + Y+
Sbjct: 150 LQDATSWMEA-NQKKLVIQGKHIAMHYS 176
Score = 78 (32.5 bits), Expect = 3.2e-27, Sum P(5) = 3.2e-27
Identities = 18/82 (21%), Positives = 44/82 (53%)
Query: 288 TIVVKGLSQKTTEEDLYQILAEWGPL--RHVRVIKERNSGVSRGFAFIDFPSVGAARAMM 345
TI+++ ++ T + + L+ + L ++R+IK++ + +RGFAF+ S A ++
Sbjct: 232 TIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLL 291
Query: 346 DRIGD--DGLVVDGRKLFFEYS 365
+ L +DG+ + +++
Sbjct: 292 QILQSLHPPLKIDGKTIGVDFA 313
Score = 68 (29.0 bits), Expect = 1.9e-42, Sum P(6) = 1.9e-42
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 879 KRRFSEMPLPPATQKEQPQTTYRDRAAERRSLYG 912
+ R SE L +E+ + YRDRAAERR YG
Sbjct: 681 RSRLSEQELEALELRER-EMKYRDRAAERREKYG 713
Score = 64 (27.6 bits), Expect = 1.9e-42, Sum P(6) = 1.9e-42
Identities = 18/63 (28%), Positives = 31/63 (49%)
Query: 71 QSRRRNYEEDYSLDRESRRHEKPYIDSYHEMDAYCGHEIDSFPEFDKFRDGYRNIENYRD 130
+SR R + DY + RR ++ Y D Y + D+ E + D+ DGY + +Y +
Sbjct: 29 ESRSRRRDSDYKRSSDDRRGDR-Y-DDYRDYDSP-ERERER-RNSDRSEDGYHSDGDYGE 84
Query: 131 HGF 133
H +
Sbjct: 85 HDY 87
Score = 40 (19.1 bits), Expect = 3.1e-15, Sum P(4) = 3.1e-15
Identities = 14/51 (27%), Positives = 19/51 (37%)
Query: 913 SSFSAGDDLPDVGSGDSNRDFALKKGSVDSMPFPPGVGGRGFTADSVQSYE 963
S+FS S + + + GSVD PG G A Q Y+
Sbjct: 329 SAFSVASTAIAAAQWSSTQSQSGEGGSVDYSYLQPGQDGYAQYAQYSQDYQ 379
Score = 38 (18.4 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 89 RHEKPYIDSYHE--MDAYCGHEIDSFPEFDKFRDGYRNIENYRDHGFERPPRFG 140
RH++ + H+ MD Y + S E + R ++ YRD ER ++G
Sbjct: 664 RHQQ--LSDLHKQNMDIYRRSRL-SEQELEALELREREMK-YRDRAAERREKYG 713
>RGD|1305059 [details] [associations]
symbol:Rbm5 "RNA binding motif protein 5" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000245 "spliceosomal complex assembly" evidence=ISO;ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO;ISS] [GO:0003729 "mRNA binding"
evidence=ISO;ISS] [GO:0005634 "nucleus" evidence=ISO;ISS]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000467 InterPro:IPR000504 InterPro:IPR001876
InterPro:IPR007087 InterPro:IPR012677 InterPro:IPR015880
Pfam:PF00641 Pfam:PF01585 PROSITE:PS00028 PROSITE:PS01358
PROSITE:PS50102 PROSITE:PS50157 PROSITE:PS50174 PROSITE:PS50199
SMART:SM00355 SMART:SM00360 SMART:SM00443 SMART:SM00547 RGD:1305059
GO:GO:0005634 GO:GO:0006915 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0043065 EMBL:CH473954 GeneTree:ENSGT00510000046476
GO:GO:0000245 GO:GO:0000381 eggNOG:NOG290849 KO:K13094
HOGENOM:HOG000046285 CTD:10181 OrthoDB:EOG4VT5WV EMBL:BC166477
IPI:IPI00193008 RefSeq:NP_001094018.1 UniGene:Rn.17033
ProteinModelPortal:B2GV05 STRING:B2GV05 PhosphoSite:B2GV05
PRIDE:B2GV05 Ensembl:ENSRNOT00000024529 GeneID:300996
KEGG:rno:300996 UCSC:RGD:1305059 NextBio:647878 ArrayExpress:B2GV05
Genevestigator:B2GV05 Uniprot:B2GV05
Length = 815
Score = 185 (70.2 bits), Expect = 1.9e-42, Sum P(6) = 1.9e-42
Identities = 46/119 (38%), Positives = 66/119 (55%)
Query: 931 RDFALKKGSVDSMPFPPGVGGRG-FTADSVQSYEVITADKAIDENNVGNRMLRSMGWHEG 989
RD A ++ +P PP + F A +V +YE T D ID +N+GN+ML++MGW EG
Sbjct: 702 RDRAAERREKYGIPEPPEPKRKKQFDAGTV-NYEQPTKD-GIDHSNIGNKMLQAMGWREG 759
Query: 990 LGLGKDGSGMIEPVQAQAMDSRAGLGSQQKKVDPSLEVQAGDSYKTLIHKKALARFREM 1048
GLG+ G+ P++AQ AGLG++ + + DSYK + K ARF EM
Sbjct: 760 SGLGRKCQGITAPIEAQVRLKGAGLGAKGS----AYGLSGADSYKDAVRKAMFARFTEM 814
Score = 151 (58.2 bits), Expect = 1.9e-42, Sum P(6) = 1.9e-42
Identities = 45/159 (28%), Positives = 76/159 (47%)
Query: 377 GQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTD---DAPPAEMNSSN 433
G+ AM +SN + DW+C C NF +R CF+C + D + PP S
Sbjct: 168 GKHIAM--HYSNPRPKFE-DWLCNKCCLNNFRKRLKCFRCGADKFDSEQEVPPGTTESVQ 224
Query: 434 PIPLGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAP--IKDLRLVRDKFTHVSRGF 491
+ DT +++R + + + + S +A + ++RL++DK T +RGF
Sbjct: 225 SVDYY---CDT-----IILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGF 276
Query: 492 AFLHFHSVEDASKALEATNGT--TLEKNGQILRVAYAKS 528
AF+ S DAS+ L+ L+ +G+ + V +AKS
Sbjct: 277 AFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAKS 315
Score = 132 (51.5 bits), Expect = 1.9e-42, Sum P(6) = 1.9e-42
Identities = 26/76 (34%), Positives = 44/76 (57%)
Query: 598 SGFVWDEASGYYYDAASGFYYDGNTGLYYDGNSGIWYSYDQQTQQYIPCTDQNDNKTSGN 657
S + +DE+SGYYYD +G YYD N+ YY+ + + +D + + Y+P + + N+ +G
Sbjct: 460 STYQYDESSGYYYDPTTGLYYDPNSQYYYNSLTQQYLYWDGEKETYVPAAESSSNQQAGL 519
Query: 658 GSEPSKQVDGGSKNRK 673
PS + +G K K
Sbjct: 520 ---PSTK-EGKEKKEK 531
Score = 116 (45.9 bits), Expect = 1.9e-42, Sum P(6) = 1.9e-42
Identities = 30/83 (36%), Positives = 50/83 (60%)
Query: 286 SGTIVVKGLSQKTTEEDLYQILAEW-GPL-RHVRVIKERNSGVSRGFAFIDFPSVGAARA 343
S TI+++GL TE D+ +++ + GP VR++K R +GVSRGFAF++F + A +
Sbjct: 97 SKTIMLRGLPITITESDIREMMESFEGPQPADVRLMK-RKTGVSRGFAFVEFYHLQDATS 155
Query: 344 MMDRIGDDGLVVDGRKLFFEYSS 366
M+ LV+ G+ + YS+
Sbjct: 156 WMEA-NQKKLVIQGKHIAMHYSN 177
Score = 94 (38.1 bits), Expect = 7.7e-29, Sum P(5) = 7.7e-29
Identities = 30/88 (34%), Positives = 48/88 (54%)
Query: 442 SDTGPTHVLVVRGLDEYADEEMLRY---EFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHS 498
SD + +++RGL E +R F P D+RL++ K T VSRGFAF+ F+
Sbjct: 92 SDERESKTIMLRGLPITITESDIREMMESFEGPQPA-DVRLMKRK-TGVSRGFAFVEFYH 149
Query: 499 VEDASKALEATNGTTLEKNGQILRVAYA 526
++DA+ +EA N L G+ + + Y+
Sbjct: 150 LQDATSWMEA-NQKKLVIQGKHIAMHYS 176
Score = 78 (32.5 bits), Expect = 3.2e-27, Sum P(5) = 3.2e-27
Identities = 18/82 (21%), Positives = 44/82 (53%)
Query: 288 TIVVKGLSQKTTEEDLYQILAEWGPL--RHVRVIKERNSGVSRGFAFIDFPSVGAARAMM 345
TI+++ ++ T + + L+ + L ++R+IK++ + +RGFAF+ S A ++
Sbjct: 232 TIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLL 291
Query: 346 DRIGD--DGLVVDGRKLFFEYS 365
+ L +DG+ + +++
Sbjct: 292 QILQSLHPPLKIDGKTIGVDFA 313
Score = 68 (29.0 bits), Expect = 1.9e-42, Sum P(6) = 1.9e-42
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 879 KRRFSEMPLPPATQKEQPQTTYRDRAAERRSLYG 912
+ R SE L +E+ + YRDRAAERR YG
Sbjct: 681 RSRLSEQELEALELRER-EMKYRDRAAERREKYG 713
Score = 64 (27.6 bits), Expect = 1.9e-42, Sum P(6) = 1.9e-42
Identities = 18/63 (28%), Positives = 31/63 (49%)
Query: 71 QSRRRNYEEDYSLDRESRRHEKPYIDSYHEMDAYCGHEIDSFPEFDKFRDGYRNIENYRD 130
+SR R + DY + RR ++ Y D Y + D+ E + D+ DGY + +Y +
Sbjct: 29 ESRSRRRDSDYKRSSDDRRGDR-Y-DDYRDYDSP-ERERER-RNSDRSEDGYHSDGDYGE 84
Query: 131 HGF 133
H +
Sbjct: 85 HDY 87
Score = 38 (18.4 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 89 RHEKPYIDSYHE--MDAYCGHEIDSFPEFDKFRDGYRNIENYRDHGFERPPRFG 140
RH++ + H+ MD Y + S E + R ++ YRD ER ++G
Sbjct: 664 RHQQ--LSDLHKQNMDIYRRSRL-SEQELEALELREREMK-YRDRAAERREKYG 713
>UNIPROTKB|E2QUP3 [details] [associations]
symbol:RBM5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000245 "spliceosomal complex assembly" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000467
InterPro:IPR000504 InterPro:IPR001876 InterPro:IPR007087
InterPro:IPR012677 InterPro:IPR015880 Pfam:PF00641 Pfam:PF01585
PROSITE:PS01358 PROSITE:PS50102 PROSITE:PS50157 PROSITE:PS50174
PROSITE:PS50199 SMART:SM00355 SMART:SM00360 SMART:SM00443
SMART:SM00547 GO:GO:0005634 GO:GO:0000166 GO:GO:0008270
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0043065
GeneTree:ENSGT00510000046476 GO:GO:0000245 GO:GO:0000381 KO:K13094
CTD:10181 OMA:TADSYKD EMBL:AAEX03012225 RefSeq:XP_861224.2
ProteinModelPortal:E2QUP3 Ensembl:ENSCAFT00000017309 GeneID:476618
KEGG:cfa:476618 NextBio:20852241 Uniprot:E2QUP3
Length = 815
Score = 185 (70.2 bits), Expect = 3.7e-42, Sum P(6) = 3.7e-42
Identities = 46/119 (38%), Positives = 66/119 (55%)
Query: 931 RDFALKKGSVDSMPFPPGVGGRG-FTADSVQSYEVITADKAIDENNVGNRMLRSMGWHEG 989
RD A ++ +P PP + F A +V +YE T D ID +N+GN+ML++MGW EG
Sbjct: 702 RDRAAERREKYGIPEPPEPKRKKQFDAGTV-NYEQPTKD-GIDHSNIGNKMLQAMGWREG 759
Query: 990 LGLGKDGSGMIEPVQAQAMDSRAGLGSQQKKVDPSLEVQAGDSYKTLIHKKALARFREM 1048
GLG+ G+ P++AQ AGLG++ + + DSYK + K ARF EM
Sbjct: 760 SGLGRKCQGITAPIEAQVRLKGAGLGAKGS----AYGLSGADSYKDAVRKAMFARFTEM 814
Score = 151 (58.2 bits), Expect = 3.7e-42, Sum P(6) = 3.7e-42
Identities = 45/159 (28%), Positives = 76/159 (47%)
Query: 377 GQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTD---DAPPAEMNSSN 433
G+ AM +SN + DW+C C NF +R CF+C + D + PP S
Sbjct: 168 GKHIAM--HYSNPRPKFE-DWLCNKCCLNNFRKRLKCFRCGADKFDSEQEVPPGTTESVQ 224
Query: 434 PIPLGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAP--IKDLRLVRDKFTHVSRGF 491
+ DT +++R + + + + S +A + ++RL++DK T +RGF
Sbjct: 225 SVDYY---CDT-----IILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGF 276
Query: 492 AFLHFHSVEDASKALEATNGT--TLEKNGQILRVAYAKS 528
AF+ S DAS+ L+ L+ +G+ + V +AKS
Sbjct: 277 AFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAKS 315
Score = 129 (50.5 bits), Expect = 3.7e-42, Sum P(6) = 3.7e-42
Identities = 25/76 (32%), Positives = 44/76 (57%)
Query: 598 SGFVWDEASGYYYDAASGFYYDGNTGLYYDGNSGIWYSYDQQTQQYIPCTDQNDNKTSGN 657
S + +DE+SGYYYD +G YYD N+ YY+ + + +D + + Y+P + + ++ +G
Sbjct: 460 STYQYDESSGYYYDPTTGLYYDPNSQYYYNSLTQQYLYWDGEKETYVPAAESSSHQQTG- 518
Query: 658 GSEPSKQVDGGSKNRK 673
P+K+ G K K
Sbjct: 519 -LPPAKE--GKEKKEK 531
Score = 116 (45.9 bits), Expect = 3.7e-42, Sum P(6) = 3.7e-42
Identities = 30/83 (36%), Positives = 50/83 (60%)
Query: 286 SGTIVVKGLSQKTTEEDLYQILAEW-GPL-RHVRVIKERNSGVSRGFAFIDFPSVGAARA 343
S TI+++GL TE D+ +++ + GP VR++K R +GVSRGFAF++F + A +
Sbjct: 97 SKTIMLRGLPITITESDIREMMESFEGPQPADVRLMK-RKTGVSRGFAFVEFYHLQDATS 155
Query: 344 MMDRIGDDGLVVDGRKLFFEYSS 366
M+ LV+ G+ + YS+
Sbjct: 156 WMEA-NQKKLVIQGKHIAMHYSN 177
Score = 94 (38.1 bits), Expect = 1.6e-28, Sum P(5) = 1.6e-28
Identities = 30/88 (34%), Positives = 48/88 (54%)
Query: 442 SDTGPTHVLVVRGLDEYADEEMLRY---EFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHS 498
SD + +++RGL E +R F P D+RL++ K T VSRGFAF+ F+
Sbjct: 92 SDERESKTIMLRGLPITITESDIREMMESFEGPQPA-DVRLMKRK-TGVSRGFAFVEFYH 149
Query: 499 VEDASKALEATNGTTLEKNGQILRVAYA 526
++DA+ +EA N L G+ + + Y+
Sbjct: 150 LQDATSWMEA-NQKKLVIQGKHIAMHYS 176
Score = 78 (32.5 bits), Expect = 6.5e-27, Sum P(5) = 6.5e-27
Identities = 18/82 (21%), Positives = 44/82 (53%)
Query: 288 TIVVKGLSQKTTEEDLYQILAEWGPL--RHVRVIKERNSGVSRGFAFIDFPSVGAARAMM 345
TI+++ ++ T + + L+ + L ++R+IK++ + +RGFAF+ S A ++
Sbjct: 232 TIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLL 291
Query: 346 DRIGD--DGLVVDGRKLFFEYS 365
+ L +DG+ + +++
Sbjct: 292 QILQSLHPPLKIDGKTIGVDFA 313
Score = 68 (29.0 bits), Expect = 3.7e-42, Sum P(6) = 3.7e-42
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 879 KRRFSEMPLPPATQKEQPQTTYRDRAAERRSLYG 912
+ R SE L +E+ + YRDRAAERR YG
Sbjct: 681 RSRLSEQELEALELRER-EMKYRDRAAERREKYG 713
Score = 64 (27.6 bits), Expect = 3.7e-42, Sum P(6) = 3.7e-42
Identities = 18/63 (28%), Positives = 31/63 (49%)
Query: 71 QSRRRNYEEDYSLDRESRRHEKPYIDSYHEMDAYCGHEIDSFPEFDKFRDGYRNIENYRD 130
+SR R + DY + RR ++ Y D Y + D+ E + D+ DGY + +Y +
Sbjct: 29 ESRSRRRDSDYKRSSDDRRGDR-Y-DDYRDYDSP-ERERER-RNSDRSEDGYHSDGDYGE 84
Query: 131 HGF 133
H +
Sbjct: 85 HDY 87
Score = 49 (22.3 bits), Expect = 4.9e-34, Sum P(6) = 4.9e-34
Identities = 26/108 (24%), Positives = 42/108 (38%)
Query: 580 QEQRSDGDMVQKDGLAL-QSGFVWDEASGYYYDAASGFYYDGNTGLYYDGNSGIWYSYDQ 638
Q Q +G V L Q G+ + + Y D FY GL D +S +
Sbjct: 347 QSQSGEGGSVDYSYLQPGQDGYA--QYAQYSQDYQQ-FYQQQAGGLESDASSASGTAVTT 403
Query: 639 QTQQYIPCTDQNDNKTSGNGSEPSKQVDGGSKNRKVVISAPAATVSSV 686
+ + + Q N+TS S P+++ + APAA+ + V
Sbjct: 404 TSAAVVSQSPQLYNQTSNPPSSPTEEAQPSTSTST---QAPAASPTGV 448
Score = 40 (19.1 bits), Expect = 3.1e-15, Sum P(4) = 3.1e-15
Identities = 14/51 (27%), Positives = 19/51 (37%)
Query: 913 SSFSAGDDLPDVGSGDSNRDFALKKGSVDSMPFPPGVGGRGFTADSVQSYE 963
S+FS S + + + GSVD PG G A Q Y+
Sbjct: 329 SAFSVASTAIAAAQWSSTQSQSGEGGSVDYSYLQPGQDGYAQYAQYSQDYQ 379
Score = 38 (18.4 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 89 RHEKPYIDSYHE--MDAYCGHEIDSFPEFDKFRDGYRNIENYRDHGFERPPRFG 140
RH++ + H+ MD Y + S E + R ++ YRD ER ++G
Sbjct: 664 RHQQ--LSDLHKQNMDIYRRSRL-SEQELEALELREREMK-YRDRAAERREKYG 713
>UNIPROTKB|Q1RMU5 [details] [associations]
symbol:RBM5 "RNA-binding protein 5" species:9913 "Bos
taurus" [GO:0000245 "spliceosomal complex assembly" evidence=ISS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0043065 "positive
regulation of apoptotic process" evidence=ISS] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000467
InterPro:IPR000504 InterPro:IPR001876 InterPro:IPR007087
InterPro:IPR012677 InterPro:IPR015880 Pfam:PF00641 Pfam:PF01585
PROSITE:PS00028 PROSITE:PS01358 PROSITE:PS50102 PROSITE:PS50157
PROSITE:PS50174 PROSITE:PS50199 SMART:SM00355 SMART:SM00360
SMART:SM00443 SMART:SM00547 GO:GO:0005634 GO:GO:0006915
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0043065
GeneTree:ENSGT00510000046476 GO:GO:0000245 GO:GO:0000381
eggNOG:NOG290849 HOVERGEN:HBG000318 KO:K13094 HOGENOM:HOG000046285
EMBL:BC114706 IPI:IPI00731526 RefSeq:NP_001039839.1
UniGene:Bt.76139 ProteinModelPortal:Q1RMU5 STRING:Q1RMU5
PRIDE:Q1RMU5 Ensembl:ENSBTAT00000008305 GeneID:534216
KEGG:bta:534216 CTD:10181 InParanoid:Q1RMU5 OMA:TADSYKD
OrthoDB:EOG4VT5WV NextBio:20876310 Uniprot:Q1RMU5
Length = 815
Score = 185 (70.2 bits), Expect = 9.6e-42, Sum P(6) = 9.6e-42
Identities = 46/119 (38%), Positives = 66/119 (55%)
Query: 931 RDFALKKGSVDSMPFPPGVGGRG-FTADSVQSYEVITADKAIDENNVGNRMLRSMGWHEG 989
RD A ++ +P PP + F A +V +YE T D ID +N+GN+ML++MGW EG
Sbjct: 702 RDRAAERREKYGIPEPPEPKRKKQFDAGTV-NYEQPTKD-GIDHSNIGNKMLQAMGWREG 759
Query: 990 LGLGKDGSGMIEPVQAQAMDSRAGLGSQQKKVDPSLEVQAGDSYKTLIHKKALARFREM 1048
GLG+ G+ P++AQ AGLG++ + + DSYK + K ARF EM
Sbjct: 760 SGLGRKCQGITAPIEAQVRLKGAGLGAKGS----AYGLSGADSYKDAVRKAMFARFTEM 814
Score = 151 (58.2 bits), Expect = 9.6e-42, Sum P(6) = 9.6e-42
Identities = 45/159 (28%), Positives = 76/159 (47%)
Query: 377 GQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTD---DAPPAEMNSSN 433
G+ AM +SN + DW+C C NF +R CF+C + D + PP S
Sbjct: 168 GKHIAM--HYSNPRPKFE-DWLCNKCCLNNFRKRLKCFRCGADKFDSEQEVPPGTTESVQ 224
Query: 434 PIPLGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAP--IKDLRLVRDKFTHVSRGF 491
+ DT +++R + + + + S +A + ++RL++DK T +RGF
Sbjct: 225 SVDYY---CDT-----IILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGF 276
Query: 492 AFLHFHSVEDASKALEATNGT--TLEKNGQILRVAYAKS 528
AF+ S DAS+ L+ L+ +G+ + V +AKS
Sbjct: 277 AFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAKS 315
Score = 125 (49.1 bits), Expect = 9.6e-42, Sum P(6) = 9.6e-42
Identities = 33/90 (36%), Positives = 44/90 (48%)
Query: 562 VGWAPKEYNPDDKQPTRGQE--QRSDGDMVQKD-----GLALQSGFVWDEASGYYYDAAS 614
V +P+ YN P+ E Q S Q G+ + + + S Y YD +S
Sbjct: 409 VSQSPQLYNQTSNPPSSPTEEAQPSTSTSTQAPAASPTGVVPGTKYAVPDTSTYQYDESS 468
Query: 615 GFYYDGNTGLYYDGNSGIWYSYDQQTQQYI 644
G+YYD TGLYYD NS Y Y+ TQQY+
Sbjct: 469 GYYYDPTTGLYYDPNSQ--YYYNSLTQQYL 496
Score = 122 (48.0 bits), Expect = 1.9e-41, Sum P(6) = 1.9e-41
Identities = 25/76 (32%), Positives = 43/76 (56%)
Query: 598 SGFVWDEASGYYYDAASGFYYDGNTGLYYDGNSGIWYSYDQQTQQYIPCTDQNDNKTSGN 657
S + +DE+SGYYYD +G YYD N+ YY+ + + +D + + Y+ + N ++ +G
Sbjct: 460 STYQYDESSGYYYDPTTGLYYDPNSQYYYNSLTQQYLYWDGEKETYMLAAESNSHQQTG- 518
Query: 658 GSEPSKQVDGGSKNRK 673
P+K+ G K K
Sbjct: 519 -LPPAKE--GKEKKEK 531
Score = 116 (45.9 bits), Expect = 9.6e-42, Sum P(6) = 9.6e-42
Identities = 30/83 (36%), Positives = 50/83 (60%)
Query: 286 SGTIVVKGLSQKTTEEDLYQILAEW-GPL-RHVRVIKERNSGVSRGFAFIDFPSVGAARA 343
S TI+++GL TE D+ +++ + GP VR++K R +GVSRGFAF++F + A +
Sbjct: 97 SKTIMLRGLPITITESDIREMMESFEGPQPADVRLMK-RKTGVSRGFAFVEFYHLQDATS 155
Query: 344 MMDRIGDDGLVVDGRKLFFEYSS 366
M+ LV+ G+ + YS+
Sbjct: 156 WMEA-NQKKLVIQGKHIAMHYSN 177
Score = 94 (38.1 bits), Expect = 3.9e-28, Sum P(5) = 3.9e-28
Identities = 30/88 (34%), Positives = 48/88 (54%)
Query: 442 SDTGPTHVLVVRGLDEYADEEMLRY---EFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHS 498
SD + +++RGL E +R F P D+RL++ K T VSRGFAF+ F+
Sbjct: 92 SDERESKTIMLRGLPITITESDIREMMESFEGPQPA-DVRLMKRK-TGVSRGFAFVEFYH 149
Query: 499 VEDASKALEATNGTTLEKNGQILRVAYA 526
++DA+ +EA N L G+ + + Y+
Sbjct: 150 LQDATSWMEA-NQKKLVIQGKHIAMHYS 176
Score = 78 (32.5 bits), Expect = 1.6e-26, Sum P(5) = 1.6e-26
Identities = 18/82 (21%), Positives = 44/82 (53%)
Query: 288 TIVVKGLSQKTTEEDLYQILAEWGPL--RHVRVIKERNSGVSRGFAFIDFPSVGAARAMM 345
TI+++ ++ T + + L+ + L ++R+IK++ + +RGFAF+ S A ++
Sbjct: 232 TIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLL 291
Query: 346 DRIGD--DGLVVDGRKLFFEYS 365
+ L +DG+ + +++
Sbjct: 292 QILQSLHPPLKIDGKTIGVDFA 313
Score = 68 (29.0 bits), Expect = 9.6e-42, Sum P(6) = 9.6e-42
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 879 KRRFSEMPLPPATQKEQPQTTYRDRAAERRSLYG 912
+ R SE L +E+ + YRDRAAERR YG
Sbjct: 681 RSRLSEQELEALELRER-EMKYRDRAAERREKYG 713
Score = 64 (27.6 bits), Expect = 9.6e-42, Sum P(6) = 9.6e-42
Identities = 18/63 (28%), Positives = 31/63 (49%)
Query: 71 QSRRRNYEEDYSLDRESRRHEKPYIDSYHEMDAYCGHEIDSFPEFDKFRDGYRNIENYRD 130
+SR R + DY + RR ++ Y D Y + D+ E + D+ DGY + +Y +
Sbjct: 29 ESRSRRRDSDYKRSSDDRRGDR-Y-DDYRDYDSP-ERERER-RNSDRSEDGYHSDGDYGE 84
Query: 131 HGF 133
H +
Sbjct: 85 HDY 87
Score = 49 (22.3 bits), Expect = 4.9e-34, Sum P(6) = 4.9e-34
Identities = 26/108 (24%), Positives = 42/108 (38%)
Query: 580 QEQRSDGDMVQKDGLAL-QSGFVWDEASGYYYDAASGFYYDGNTGLYYDGNSGIWYSYDQ 638
Q Q +G V L Q G+ + + Y D FY GL D +S +
Sbjct: 347 QSQSGEGGSVDYSYLQPGQDGYA--QYAQYSQDYQQ-FYQQQAGGLESDASSASGTAVTT 403
Query: 639 QTQQYIPCTDQNDNKTSGNGSEPSKQVDGGSKNRKVVISAPAATVSSV 686
+ + + Q N+TS S P+++ + APAA+ + V
Sbjct: 404 TSAAVVSQSPQLYNQTSNPPSSPTEEAQPSTSTST---QAPAASPTGV 448
Score = 40 (19.1 bits), Expect = 3.1e-15, Sum P(4) = 3.1e-15
Identities = 14/51 (27%), Positives = 19/51 (37%)
Query: 913 SSFSAGDDLPDVGSGDSNRDFALKKGSVDSMPFPPGVGGRGFTADSVQSYE 963
S+FS S + + + GSVD PG G A Q Y+
Sbjct: 329 SAFSVASTAIAAAQWSSTQSQSGEGGSVDYSYLQPGQDGYAQYAQYSQDYQ 379
Score = 38 (18.4 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 89 RHEKPYIDSYHE--MDAYCGHEIDSFPEFDKFRDGYRNIENYRDHGFERPPRFG 140
RH++ + H+ MD Y + S E + R ++ YRD ER ++G
Sbjct: 664 RHQQ--LSDLHKQNMDIYRRSRL-SEQELEALELREREMK-YRDRAAERREKYG 713
>UNIPROTKB|E1BXK5 [details] [associations]
symbol:E1BXK5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000245
"spliceosomal complex assembly" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0043065 "positive regulation of
apoptotic process" evidence=IEA] InterPro:IPR000467
InterPro:IPR000504 InterPro:IPR001876 InterPro:IPR007087
InterPro:IPR012677 InterPro:IPR015880 Pfam:PF00641 Pfam:PF01585
PROSITE:PS01358 PROSITE:PS50102 PROSITE:PS50157 PROSITE:PS50174
PROSITE:PS50199 SMART:SM00355 SMART:SM00360 SMART:SM00443
SMART:SM00547 GO:GO:0005634 GO:GO:0000166 GO:GO:0008270
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0043065
GeneTree:ENSGT00510000046476 GO:GO:0000245 GO:GO:0000381
OMA:TADSYKD EMBL:AADN02056427 EMBL:AADN02056428 EMBL:AADN02056429
IPI:IPI00585702 Ensembl:ENSGALT00000007370 Uniprot:E1BXK5
Length = 810
Score = 163 (62.4 bits), Expect = 3.5e-39, Sum P(6) = 3.5e-39
Identities = 44/120 (36%), Positives = 63/120 (52%)
Query: 931 RDFALKKGSVDSMPFPPGVGGRG-FTADSVQSYEVITADKAIDENNVGNRMLRSMGWHEG 989
RD A ++ +P PP + + A +V +YE T D +D +N+GN+ML++MGW EG
Sbjct: 696 RDRAAERREKYGIPEPPEPKRKKVYDAGTV-NYEQPTKD-GLDNSNIGNKMLQAMGWREG 753
Query: 990 LGLGKDGSGMIEPVQA-QAMDSRAGLGSQQKKVDPSLEVQAGDSYKTLIHKKALARFREM 1048
GLG+ G+ P++ A A +G V S V DSYK + K ARF EM
Sbjct: 754 SGLGRKCQGITAPIEGGMAGFKPAAVGF----VSSSYGVSTADSYKDAVRKAMFARFTEM 809
Score = 160 (61.4 bits), Expect = 3.5e-39, Sum P(6) = 3.5e-39
Identities = 44/156 (28%), Positives = 75/156 (48%)
Query: 377 GQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIP 436
G++ AM +SN + DW+C C NF RR CF+C + D ++ +
Sbjct: 167 GKQIAM--HYSNPRPKFE-DWLCNKCCLYNFRRRLKCFRCGADKFDSEQEVPPGTAEAVQ 223
Query: 437 LGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAP--IKDLRLVRDKFTHVSRGFAFL 494
DT +++R + + E + S +A + ++RL++DK T +RGFAF+
Sbjct: 224 SVDYYCDT-----IILRNIAPHTVVESIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFV 278
Query: 495 HFHSVEDASKALEATNGTT--LEKNGQILRVAYAKS 528
S DAS+ L+ L+ +G+ + V +AKS
Sbjct: 279 QLSSAMDASQLLQILQSLQPPLKIDGKTIGVDFAKS 314
Score = 120 (47.3 bits), Expect = 3.5e-39, Sum P(6) = 3.5e-39
Identities = 30/88 (34%), Positives = 41/88 (46%)
Query: 562 VGWAPKEYN-----PDDKQPTRGQEQRSDGDMVQKDGLALQSGFVWDEASGYYYDAASGF 616
V +P+ YN PD + G+ + + + S Y YD +SG+
Sbjct: 408 VSQSPQLYNQQTNSPDSPTQAAPASTSTQAQTAAPTGVVPGTKYAVPDTSTYQYDESSGY 467
Query: 617 YYDGNTGLYYDGNSGIWYSYDQQTQQYI 644
YYD TGLYYD NS Y Y+ TQQY+
Sbjct: 468 YYDPVTGLYYDPNSQ--YYYNALTQQYL 493
Score = 114 (45.2 bits), Expect = 1.4e-38, Sum P(6) = 1.4e-38
Identities = 19/51 (37%), Positives = 32/51 (62%)
Query: 598 SGFVWDEASGYYYDAASGFYYDGNTGLYYDGNSGIWYSYDQQTQQYIPCTD 648
S + +DE+SGYYYD +G YYD N+ YY+ + + +D + + Y+P +
Sbjct: 457 STYQYDESSGYYYDPVTGLYYDPNSQYYYNALTQQYLYWDGEKETYMPAAE 507
Score = 112 (44.5 bits), Expect = 3.5e-39, Sum P(6) = 3.5e-39
Identities = 29/83 (34%), Positives = 49/83 (59%)
Query: 286 SGTIVVKGLSQKTTEEDLYQILAEW-GPL-RHVRVIKERNSGVSRGFAFIDFPSVGAARA 343
S TI+++GL TE D+ +++ + P VR++K R +GVSRGFAF++F A +
Sbjct: 96 SKTIMLRGLPITVTENDIRELIESFESPQPADVRLMK-RKTGVSRGFAFVEFYHFQDATS 154
Query: 344 MMDRIGDDGLVVDGRKLFFEYSS 366
M+ LV+ G+++ YS+
Sbjct: 155 WMEA-NQKKLVIQGKQIAMHYSN 176
Score = 92 (37.4 bits), Expect = 6.5e-25, Sum P(5) = 6.5e-25
Identities = 29/88 (32%), Positives = 47/88 (53%)
Query: 442 SDTGPTHVLVVRGLDEYADEEMLRY---EFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHS 498
+D + +++RGL E +R F P D+RL++ K T VSRGFAF+ F+
Sbjct: 91 NDEKESKTIMLRGLPITVTENDIRELIESFESPQPA-DVRLMKRK-TGVSRGFAFVEFYH 148
Query: 499 VEDASKALEATNGTTLEKNGQILRVAYA 526
+DA+ +EA N L G+ + + Y+
Sbjct: 149 FQDATSWMEA-NQKKLVIQGKQIAMHYS 175
Score = 81 (33.6 bits), Expect = 8.4e-24, Sum P(5) = 8.4e-24
Identities = 19/82 (23%), Positives = 44/82 (53%)
Query: 288 TIVVKGLSQKTTEEDLYQILAEWGPL--RHVRVIKERNSGVSRGFAFIDFPSVGAARAMM 345
TI+++ ++ T E + L+ + L ++R+IK++ + +RGFAF+ S A ++
Sbjct: 231 TIILRNIAPHTVVESIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLL 290
Query: 346 DRIGD--DGLVVDGRKLFFEYS 365
+ L +DG+ + +++
Sbjct: 291 QILQSLQPPLKIDGKTIGVDFA 312
Score = 75 (31.5 bits), Expect = 1.3e-34, Sum P(6) = 1.3e-34
Identities = 22/84 (26%), Positives = 37/84 (44%)
Query: 598 SGFVWDEASGYYYDAASGFYYDGNTG--LYYDGNS--------GIWYSYDQQTQQYIPCT 647
SG+ +D +G YYD S +YY+ T LY+DG GI Y T
Sbjct: 465 SGYYYDPVTGLYYDPNSQYYYNALTQQYLYWDGEKETYMPAAEGITYQQTTTTTTTKEVK 524
Query: 648 DQNDNKTSGNGSEPSKQVDGGSKN 671
++ + S + +K ++ +K+
Sbjct: 525 EKKEKPKSKTAQQIAKDMERWAKS 548
Score = 66 (28.3 bits), Expect = 3.5e-39, Sum P(6) = 3.5e-39
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 71 QSRRRNYEEDYSLDRESRRHEKPYIDSYHEMDAYCGHEIDSFPEFDKFRDGYRNIENYRD 130
+SRRR +DY E RR ++ Y D Y + D+ E + DK DGY + +Y +
Sbjct: 31 RSRRR---DDYKRSSEERRGDR-Y-DDYRDYDSR-DRERER-RNSDKSEDGYHSDGDYGE 83
Query: 131 HGF 133
H +
Sbjct: 84 HDY 86
Score = 65 (27.9 bits), Expect = 3.5e-39, Sum P(6) = 3.5e-39
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 879 KRRFSEMPLPPATQKEQPQTTYRDRAAERRSLYG 912
+ + SE L +E+ + YRDRAAERR YG
Sbjct: 675 RSKLSEQELEALELRER-EMKYRDRAAERREKYG 707
Score = 55 (24.4 bits), Expect = 4.6e-38, Sum P(6) = 4.6e-38
Identities = 26/81 (32%), Positives = 35/81 (43%)
Query: 33 GSYDERRFLDERYSRDNIYPRNAFQRENYPPPPVGLWPQSRRRNYEEDY----SLDRE-S 87
GS ER DER SR R+ ++R + + RR + +DY S DRE
Sbjct: 17 GSIVEREDRDERESRSR--RRDDYKRSS----------EERRGDRYDDYRDYDSRDRERE 64
Query: 88 RRHEKPYIDSYHEMDAYCGHE 108
RR+ D YH Y H+
Sbjct: 65 RRNSDKSEDGYHSDGDYGEHD 85
Score = 43 (20.2 bits), Expect = 7.6e-37, Sum P(6) = 7.6e-37
Identities = 7/11 (63%), Positives = 11/11 (100%)
Query: 195 HESRDRERDKR 205
++SRDRER++R
Sbjct: 56 YDSRDRERERR 66
Score = 39 (18.8 bits), Expect = 2.4e-28, Sum P(5) = 2.4e-28
Identities = 14/52 (26%), Positives = 22/52 (42%)
Query: 848 VNSDTIT-AVTPFRTDASALGSYTPPVATGSGKRRFSEMPLPPATQKEQPQT 898
++SD T + P T +A+ S +P + S PA+ Q QT
Sbjct: 388 LDSDAATISGAPVTTTTAAVVSQSPQLYNQQTNSPDSPTQAAPASTSTQAQT 439
Score = 39 (18.8 bits), Expect = 5.9e-07, Sum P(2) = 5.9e-07
Identities = 15/54 (27%), Positives = 26/54 (48%)
Query: 89 RHEKPYIDSYHE--MDAYCGHEIDSFPEFDKFRDGYRNIENYRDHGFERPPRFG 140
RH++ + H+ MD Y ++ S E + R ++ YRD ER ++G
Sbjct: 658 RHQQ--LSDLHKQNMDIYRRSKL-SEQELEALELREREMK-YRDRAAERREKYG 707
Score = 38 (18.4 bits), Expect = 6.9e-31, Sum P(6) = 6.9e-31
Identities = 9/26 (34%), Positives = 9/26 (34%)
Query: 597 QSGFVWDEASGYYYDAASGFYYDGNT 622
Q WD Y AA G Y T
Sbjct: 490 QQYLYWDGEKETYMPAAEGITYQQTT 515
>UNIPROTKB|P98175 [details] [associations]
symbol:RBM10 "RNA-binding protein 10" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0034393 "positive regulation of
smooth muscle cell apoptotic process" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0003723 "RNA
binding" evidence=NAS] [GO:0005634 "nucleus" evidence=IDA;NAS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR000467 InterPro:IPR000504
InterPro:IPR001876 InterPro:IPR007087 InterPro:IPR012677
InterPro:IPR015880 Pfam:PF00641 Pfam:PF01585 PROSITE:PS01358
PROSITE:PS50102 PROSITE:PS50157 PROSITE:PS50174 PROSITE:PS50199
SMART:SM00355 SMART:SM00360 SMART:SM00443 SMART:SM00547
GO:GO:0008380 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0016585
EMBL:CH471164 EMBL:AL513366 EMBL:D50912 EMBL:AK292758 EMBL:AL137421
EMBL:BC003089 EMBL:BC004181 EMBL:BC008733 EMBL:BC024153 EMBL:U35373
IPI:IPI00375731 IPI:IPI00549342 IPI:IPI00915253 IPI:IPI00916428
RefSeq:NP_001191395.1 RefSeq:NP_001191396.1 RefSeq:NP_005667.2
RefSeq:NP_690595.1 UniGene:Hs.401509 PDB:2LXI PDB:2M2B PDBsum:2LXI
PDBsum:2M2B ProteinModelPortal:P98175 SMR:P98175 IntAct:P98175
MINT:MINT-2864879 STRING:P98175 PhosphoSite:P98175 DMDM:218512116
PaxDb:P98175 PRIDE:P98175 DNASU:8241 Ensembl:ENST00000329236
Ensembl:ENST00000345781 Ensembl:ENST00000377604 GeneID:8241
KEGG:hsa:8241 UCSC:uc004dhf.3 UCSC:uc004dhg.3 UCSC:uc004dhh.3
UCSC:uc010nhq.3 CTD:8241 GeneCards:GC0XP047004 HGNC:HGNC:9896
HPA:HPA034972 MIM:300080 MIM:311900 neXtProt:NX_P98175
Orphanet:2886 PharmGKB:PA34259 eggNOG:NOG290849 HOVERGEN:HBG000318
InParanoid:P98175 KO:K13094 OMA:NQHSLNI OrthoDB:EOG4DZ1TN
PhylomeDB:P98175 ChiTaRS:RBM10 GenomeRNAi:8241 NextBio:30996
Bgee:P98175 CleanEx:HS_RBM10 Genevestigator:P98175
GermOnline:ENSG00000182872 Uniprot:P98175
Length = 930
Score = 172 (65.6 bits), Expect = 1.6e-33, Sum P(5) = 1.6e-33
Identities = 42/119 (35%), Positives = 65/119 (54%)
Query: 931 RDFALKKGSVDSMPFPPGVGGRGFTADSVQS--YEVITADKAIDENNVGNRMLRSMGWHE 988
RD A ++ +P PP R + S S +E T D + +N+G+RML++MGW E
Sbjct: 815 RDRAAERREKYGIPEPPEPKRRKYGGISTASVDFEQPTRD-GLGSDNIGSRMLQAMGWKE 873
Query: 989 GLGLGKDGSGMIEPVQAQAMDSRAGLGSQQKKVDPSLEVQAGDSYKTLIHKKALARFRE 1047
G GLG+ G++ P++AQ +GLG++ S V + +SYK +HK + RF E
Sbjct: 874 GSGLGRKKQGIVTPIEAQTRVRGSGLGARGS----SYGVTSTESYKETLHKTMVTRFNE 928
Score = 144 (55.7 bits), Expect = 1.6e-33, Sum P(5) = 1.6e-33
Identities = 46/180 (25%), Positives = 73/180 (40%)
Query: 598 SGFVWDEASGYYYDAASGFYYDGNTGLYYDGNSGIWYSYDQQTQQYIPCTDQNDNKTSGN 657
S + +DE SGYYYD +G YYD N+ YY+ S + +D + + Y+P +Q+ +
Sbjct: 570 STYQYDETSGYYYDPQTGLYYDPNSQYYYNAQSQQYLYWDGERRTYVPALEQSADGHKET 629
Query: 658 GSEPSKQVDGGSKNRKVVISAPAATVSSVEKPA-SLPDAVQXXXXXXXXXXXXXXXXXXX 716
G+ PSK+ G K K +E+ A SL +
Sbjct: 630 GA-PSKE--GKEKKEKHKTKTAQQIAKDMERWARSLNKQKENFKNSFQPISSLRDDERRE 686
Query: 717 XXXXXXXTIVANKKKLNNATMWKQWSHDNQQSASADDRPGPA-GQASKTKFKSDSAATKE 775
+ KK A +Q + + ++DDRP P G + +SDS +E
Sbjct: 687 SATADAGYAILEKK---GALAERQHTSMDLPKLASDDRPSPPRGLVAAYSGESDSEEEQE 743
Score = 111 (44.1 bits), Expect = 1.6e-33, Sum P(5) = 1.6e-33
Identities = 29/85 (34%), Positives = 47/85 (55%)
Query: 286 SGTIVVKGLSQKTTEEDLYQILAEWG-PLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
S ++++ L Q TE+D+ L G R VR+++ ++SG SRGFAF++F + A
Sbjct: 128 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRW 187
Query: 345 MDRIGDDGLVVDGRKLFFEYSS-KP 368
M+ L + G+K+ YS KP
Sbjct: 188 MEA-NQHSLNILGQKVSMHYSDPKP 211
Score = 111 (44.1 bits), Expect = 9.0e-28, Sum P(4) = 9.0e-28
Identities = 26/81 (32%), Positives = 52/81 (64%)
Query: 447 THVLVVRGLDEYADEEMLRYEFSKHA-PIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKA 505
++++++R L + A E+ +R + H +++RL+R+K + SRGFAF+ F ++DA++
Sbjct: 128 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRW 187
Query: 506 LEATNGTTLEKNGQILRVAYA 526
+EA N +L GQ + + Y+
Sbjct: 188 MEA-NQHSLNILGQKVSMHYS 207
Score = 98 (39.6 bits), Expect = 1.6e-33, Sum P(5) = 1.6e-33
Identities = 23/72 (31%), Positives = 34/72 (47%)
Query: 377 GQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTD---DAPPAEMNSSN 433
GQ+ +M +S+ K I DW+C CG NF RR CF+C +++ P
Sbjct: 199 GQKVSM--HYSDPKPKINEDWLCNKCGVQNFKRREKCFKCGVPKSEAEQKLPLGTRLDQQ 256
Query: 434 PIPLGKKGSDTG 445
+PLG + G
Sbjct: 257 TLPLGGRELSQG 268
Score = 96 (38.9 bits), Expect = 2.5e-33, Sum P(5) = 2.5e-33
Identities = 22/101 (21%), Positives = 54/101 (53%)
Query: 431 SSNPIPLGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIK--DLRLVRDKFTHVS 488
+S + G + S +++R L+ ++ + + + +A + ++R+++DK T ++
Sbjct: 283 ASQALSQGSEPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLN 342
Query: 489 RGFAFLHFHSVEDASKALEATNGT--TLEKNGQILRVAYAK 527
RGFAF+ ++ +A++ L+ L +G+ + V +AK
Sbjct: 343 RGFAFIQLSTIVEAAQLLQILQALHPPLTIDGKTINVEFAK 383
Score = 94 (38.1 bits), Expect = 4.9e-26, Sum P(4) = 4.9e-26
Identities = 23/82 (28%), Positives = 47/82 (57%)
Query: 288 TIVVKGLSQKTTEEDLYQILAEWGPLR--HVRVIKERNSGVSRGFAFIDFPSVGAARAMM 345
TI+++ L+ +T + + LA + L +VRVIK++ + ++RGFAFI ++ A ++
Sbjct: 301 TIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTIVEAAQLL 360
Query: 346 DRIG--DDGLVVDGRKLFFEYS 365
+ L +DG+ + E++
Sbjct: 361 QILQALHPPLTIDGKTINVEFA 382
Score = 69 (29.3 bits), Expect = 1.6e-33, Sum P(5) = 1.6e-33
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 879 KRRFSEMPLPPATQKEQPQTTYRDRAAERRSLYG 912
+ SE L + + Q YRDRAAERR YG
Sbjct: 793 RAHLSENELEALEKNDMEQMKYRDRAAERREKYG 826
Score = 44 (20.5 bits), Expect = 1.5e-20, Sum P(4) = 1.5e-20
Identities = 11/56 (19%), Positives = 28/56 (50%)
Query: 849 NSDTITAVTP--FRTDASAL---GSYTPPVATGSGKRRFSEMPLPPATQKEQPQTT 899
NS + T ++P +++ + S PP + + + +S+ P+P + + +T+
Sbjct: 523 NSQSYTIMSPAVLKSELQSPTHPSSALPPATSPTAQESYSQYPVPDVSTYQYDETS 578
>UNIPROTKB|F1LWM0 [details] [associations]
symbol:F1LWM0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000467 InterPro:IPR000504
InterPro:IPR001876 InterPro:IPR007087 InterPro:IPR012677
InterPro:IPR015880 Pfam:PF00641 Pfam:PF01585 PROSITE:PS01358
PROSITE:PS50102 PROSITE:PS50157 PROSITE:PS50174 PROSITE:PS50199
SMART:SM00355 SMART:SM00360 SMART:SM00443 SMART:SM00547
GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0016585 IPI:IPI00557539 Ensembl:ENSRNOT00000040618
ArrayExpress:F1LWM0 Uniprot:F1LWM0
Length = 929
Score = 172 (65.6 bits), Expect = 5.1e-33, Sum P(5) = 5.1e-33
Identities = 42/119 (35%), Positives = 65/119 (54%)
Query: 931 RDFALKKGSVDSMPFPPGVGGRGFTADSVQS--YEVITADKAIDENNVGNRMLRSMGWHE 988
RD A ++ +P PP R + S S +E T D + +N+G+RML++MGW E
Sbjct: 814 RDRAAERREKYGIPEPPEPKRRKYGGISTASVDFEQPTRD-GLGSDNIGSRMLQAMGWKE 872
Query: 989 GLGLGKDGSGMIEPVQAQAMDSRAGLGSQQKKVDPSLEVQAGDSYKTLIHKKALARFRE 1047
G GLG+ G++ P++AQ +GLG++ S V + +SYK +HK + RF E
Sbjct: 873 GSGLGRKKQGIVTPIEAQTRVRGSGLGARGS----SYGVTSTESYKETLHKTMVTRFNE 927
Score = 139 (54.0 bits), Expect = 5.1e-33, Sum P(5) = 5.1e-33
Identities = 46/180 (25%), Positives = 72/180 (40%)
Query: 598 SGFVWDEASGYYYDAASGFYYDGNTGLYYDGNSGIWYSYDQQTQQYIPCTDQNDNKTSGN 657
S + +DE SGYYYD +G YYD N+ YY+ S + +D + + YIP +Q+ +
Sbjct: 569 STYQYDETSGYYYDPQTGLYYDPNSQYYYNAQSQQYLYWDGERRTYIPALEQSADGHKDT 628
Query: 658 GSEPSKQVDGGSKNRKVVISAPAATVSSVEKPA-SLPDAVQXXXXXXXXXXXXXXXXXXX 716
G+ SK+ G K K +E+ A SL +
Sbjct: 629 GAS-SKE--GKEKKEKHKTKTAQQIAKDMERWARSLNKQKENFKNSFQPISALRDDERRE 685
Query: 717 XXXXXXXTIVANKKKLNNATMWKQWSHDNQQSASADDRPGPA-GQASKTKFKSDSAATKE 775
+ KK A +Q + + ++DDRP P G + +SDS +E
Sbjct: 686 SATADAGYAILEKK---GALAERQHTSMDLPKLASDDRPSPPRGLVAAYSGESDSEEEQE 742
Score = 111 (44.1 bits), Expect = 5.1e-33, Sum P(5) = 5.1e-33
Identities = 29/85 (34%), Positives = 47/85 (55%)
Query: 286 SGTIVVKGLSQKTTEEDLYQILAEWG-PLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
S ++++ L Q TE+D+ L G R VR+++ ++SG SRGFAF++F + A
Sbjct: 128 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRW 187
Query: 345 MDRIGDDGLVVDGRKLFFEYSS-KP 368
M+ L + G+K+ YS KP
Sbjct: 188 MEA-NQHSLNILGQKVSMHYSDPKP 211
Score = 111 (44.1 bits), Expect = 2.9e-27, Sum P(4) = 2.9e-27
Identities = 26/81 (32%), Positives = 52/81 (64%)
Query: 447 THVLVVRGLDEYADEEMLRYEFSKHA-PIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKA 505
++++++R L + A E+ +R + H +++RL+R+K + SRGFAF+ F ++DA++
Sbjct: 128 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRW 187
Query: 506 LEATNGTTLEKNGQILRVAYA 526
+EA N +L GQ + + Y+
Sbjct: 188 MEA-NQHSLNILGQKVSMHYS 207
Score = 98 (39.6 bits), Expect = 5.1e-33, Sum P(5) = 5.1e-33
Identities = 23/72 (31%), Positives = 34/72 (47%)
Query: 377 GQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTD---DAPPAEMNSSN 433
GQ+ +M +S+ K I DW+C CG NF RR CF+C +++ P
Sbjct: 199 GQKVSM--HYSDPKPKINEDWLCNKCGVQNFKRREKCFKCGVPKSEAEQKLPLGTRLDQQ 256
Query: 434 PIPLGKKGSDTG 445
+PLG + G
Sbjct: 257 ALPLGGRELSQG 268
Score = 69 (29.3 bits), Expect = 5.1e-33, Sum P(5) = 5.1e-33
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 879 KRRFSEMPLPPATQKEQPQTTYRDRAAERRSLYG 912
+ SE L + + Q YRDRAAERR YG
Sbjct: 792 RAHLSENELEALEKNDMEQMKYRDRAAERREKYG 825
Score = 42 (19.8 bits), Expect = 2.4e-20, Sum P(4) = 2.4e-20
Identities = 11/56 (19%), Positives = 27/56 (48%)
Query: 849 NSDTITAVTP--FRTDASAL---GSYTPPVATGSGKRRFSEMPLPPATQKEQPQTT 899
NS + T ++P +++ + S PP + + +S+ P+P + + +T+
Sbjct: 522 NSQSYTIMSPAVLKSELQSPTHPSSALPPATSPTAPESYSQYPVPDVSTYQYDETS 577
>MGI|MGI:2384310 [details] [associations]
symbol:Rbm10 "RNA binding motif protein 10" species:10090
"Mus musculus" [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008285 "negative regulation of cell proliferation"
evidence=IGI;IDA] [GO:0034391 "regulation of smooth muscle cell
apoptotic process" evidence=IGI] [GO:0034393 "positive regulation
of smooth muscle cell apoptotic process" evidence=IDA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IDA] InterPro:IPR000467 InterPro:IPR000504
InterPro:IPR001876 InterPro:IPR007087 InterPro:IPR012677
InterPro:IPR015880 Pfam:PF00641 Pfam:PF01585 PROSITE:PS01358
PROSITE:PS50102 PROSITE:PS50157 PROSITE:PS50174 PROSITE:PS50199
SMART:SM00355 SMART:SM00360 SMART:SM00443 SMART:SM00547
MGI:MGI:2384310 GO:GO:0008285 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000122
GeneTree:ENSGT00510000046476 GO:GO:0034393 GO:GO:0016585
GO:GO:0070935 HSSP:P08199 CTD:8241 eggNOG:NOG290849
HOVERGEN:HBG000318 KO:K13094 OrthoDB:EOG4DZ1TN EMBL:AK122208
EMBL:AK089105 EMBL:AK145991 EMBL:AK153736 EMBL:AK167666
EMBL:AL672073 EMBL:AL807240 EMBL:BC004674 IPI:IPI00116031
IPI:IPI00468834 IPI:IPI00776254 RefSeq:NP_001161247.1
RefSeq:NP_001161248.1 RefSeq:NP_663602.1 UniGene:Mm.279194
UniGene:Mm.383632 UniGene:Mm.475412 ProteinModelPortal:Q99KG3
SMR:Q99KG3 STRING:Q99KG3 PhosphoSite:Q99KG3 PaxDb:Q99KG3
PRIDE:Q99KG3 Ensembl:ENSMUST00000064911 Ensembl:ENSMUST00000082089
Ensembl:ENSMUST00000084383 Ensembl:ENSMUST00000115374
Ensembl:ENSMUST00000115375 Ensembl:ENSMUST00000177738 GeneID:236732
KEGG:mmu:236732 UCSC:uc009stf.2 UCSC:uc009sth.2 UCSC:uc009sti.2
HOGENOM:HOG000046285 InParanoid:Q99KG3 NextBio:383047 Bgee:Q99KG3
Genevestigator:Q99KG3 Uniprot:Q99KG3
Length = 930
Score = 172 (65.6 bits), Expect = 5.1e-33, Sum P(5) = 5.1e-33
Identities = 42/119 (35%), Positives = 65/119 (54%)
Query: 931 RDFALKKGSVDSMPFPPGVGGRGFTADSVQS--YEVITADKAIDENNVGNRMLRSMGWHE 988
RD A ++ +P PP R + S S +E T D + +N+G+RML++MGW E
Sbjct: 815 RDRAAERREKYGIPEPPEPKRRKYGGISTASVDFEQPTRD-GLGSDNIGSRMLQAMGWKE 873
Query: 989 GLGLGKDGSGMIEPVQAQAMDSRAGLGSQQKKVDPSLEVQAGDSYKTLIHKKALARFRE 1047
G GLG+ G++ P++AQ +GLG++ S V + +SYK +HK + RF E
Sbjct: 874 GSGLGRKKQGIVTPIEAQTRVRGSGLGARGS----SYGVTSTESYKETLHKTMVTRFNE 928
Score = 139 (54.0 bits), Expect = 5.1e-33, Sum P(5) = 5.1e-33
Identities = 46/180 (25%), Positives = 72/180 (40%)
Query: 598 SGFVWDEASGYYYDAASGFYYDGNTGLYYDGNSGIWYSYDQQTQQYIPCTDQNDNKTSGN 657
S + +DE SGYYYD +G YYD N+ YY+ S + +D + + YIP +Q+ +
Sbjct: 570 STYQYDETSGYYYDPQTGLYYDPNSQYYYNAQSQQYLYWDGERRTYIPALEQSADGHKDT 629
Query: 658 GSEPSKQVDGGSKNRKVVISAPAATVSSVEKPA-SLPDAVQXXXXXXXXXXXXXXXXXXX 716
G+ SK+ G K K +E+ A SL +
Sbjct: 630 GAS-SKE--GKEKKEKHKTKTAQQIAKDMERWARSLNKQKENFKNSFQPISALRDDERRE 686
Query: 717 XXXXXXXTIVANKKKLNNATMWKQWSHDNQQSASADDRPGPA-GQASKTKFKSDSAATKE 775
+ KK A +Q + + ++DDRP P G + +SDS +E
Sbjct: 687 SATADAGYAILEKK---GALAERQHTSMDLPKLASDDRPSPPRGLVAAYSGESDSEEEQE 743
Score = 111 (44.1 bits), Expect = 5.1e-33, Sum P(5) = 5.1e-33
Identities = 29/85 (34%), Positives = 47/85 (55%)
Query: 286 SGTIVVKGLSQKTTEEDLYQILAEWG-PLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
S ++++ L Q TE+D+ L G R VR+++ ++SG SRGFAF++F + A
Sbjct: 128 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRW 187
Query: 345 MDRIGDDGLVVDGRKLFFEYSS-KP 368
M+ L + G+K+ YS KP
Sbjct: 188 MEA-NQHSLNILGQKVSMHYSDPKP 211
Score = 111 (44.1 bits), Expect = 2.9e-27, Sum P(4) = 2.9e-27
Identities = 26/81 (32%), Positives = 52/81 (64%)
Query: 447 THVLVVRGLDEYADEEMLRYEFSKHA-PIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKA 505
++++++R L + A E+ +R + H +++RL+R+K + SRGFAF+ F ++DA++
Sbjct: 128 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRW 187
Query: 506 LEATNGTTLEKNGQILRVAYA 526
+EA N +L GQ + + Y+
Sbjct: 188 MEA-NQHSLNILGQKVSMHYS 207
Score = 98 (39.6 bits), Expect = 5.1e-33, Sum P(5) = 5.1e-33
Identities = 23/72 (31%), Positives = 34/72 (47%)
Query: 377 GQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTD---DAPPAEMNSSN 433
GQ+ +M +S+ K I DW+C CG NF RR CF+C +++ P
Sbjct: 199 GQKVSM--HYSDPKPKINEDWLCNKCGVQNFKRREKCFKCGVPKSEAEQKLPLGTRLDQQ 256
Query: 434 PIPLGKKGSDTG 445
+PLG + G
Sbjct: 257 ALPLGGRELSQG 268
Score = 96 (38.9 bits), Expect = 8.2e-33, Sum P(5) = 8.2e-33
Identities = 22/101 (21%), Positives = 54/101 (53%)
Query: 431 SSNPIPLGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIK--DLRLVRDKFTHVS 488
+S + G + S +++R L+ ++ + + + +A + ++R+++DK T ++
Sbjct: 283 TSQALSQGSEPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLN 342
Query: 489 RGFAFLHFHSVEDASKALEATNGT--TLEKNGQILRVAYAK 527
RGFAF+ ++ +A++ L+ L +G+ + V +AK
Sbjct: 343 RGFAFIQLSTIVEAAQLLQILQALHPPLTIDGKTINVEFAK 383
Score = 94 (38.1 bits), Expect = 1.6e-25, Sum P(4) = 1.6e-25
Identities = 23/82 (28%), Positives = 47/82 (57%)
Query: 288 TIVVKGLSQKTTEEDLYQILAEWGPLR--HVRVIKERNSGVSRGFAFIDFPSVGAARAMM 345
TI+++ L+ +T + + LA + L +VRVIK++ + ++RGFAFI ++ A ++
Sbjct: 301 TIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTIVEAAQLL 360
Query: 346 DRIG--DDGLVVDGRKLFFEYS 365
+ L +DG+ + E++
Sbjct: 361 QILQALHPPLTIDGKTINVEFA 382
Score = 69 (29.3 bits), Expect = 5.1e-33, Sum P(5) = 5.1e-33
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 879 KRRFSEMPLPPATQKEQPQTTYRDRAAERRSLYG 912
+ SE L + + Q YRDRAAERR YG
Sbjct: 793 RAHLSENELEALEKNDMEQMKYRDRAAERREKYG 826
Score = 44 (20.5 bits), Expect = 1.5e-20, Sum P(4) = 1.5e-20
Identities = 11/57 (19%), Positives = 25/57 (43%)
Query: 849 NSDTITAVTP------FRTDASALGSYTPPVATGSGKRRFSEMPLPPATQKEQPQTT 899
NS + T ++P ++ S PP + + +S+ P+P + + +T+
Sbjct: 522 NSQSYTIISPAVLKAELQSPTQPSSSAFPPATSPTAPEAYSQYPVPDVSTYQYDETS 578
>UNIPROTKB|F1MFZ9 [details] [associations]
symbol:RBM10 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0034393 "positive regulation of smooth muscle
cell apoptotic process" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000467 InterPro:IPR000504
InterPro:IPR007087 InterPro:IPR012677 InterPro:IPR015880
Pfam:PF01585 PROSITE:PS50102 PROSITE:PS50157 PROSITE:PS50174
SMART:SM00355 SMART:SM00360 SMART:SM00443 GO:GO:0000166
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00510000046476 GO:GO:0016585 OMA:NQHSLNI
EMBL:DAAA02073014 EMBL:DAAA02073009 EMBL:DAAA02073010
EMBL:DAAA02073011 EMBL:DAAA02073012 EMBL:DAAA02073013
IPI:IPI00999955 Ensembl:ENSBTAT00000003758 Uniprot:F1MFZ9
Length = 996
Score = 175 (66.7 bits), Expect = 6.1e-32, Sum P(4) = 6.1e-32
Identities = 42/119 (35%), Positives = 66/119 (55%)
Query: 931 RDFALKKGSVDSMPFPPGVGGRGFTADSVQS--YEVITADKAIDENNVGNRMLRSMGWHE 988
RD A ++ +P PP R ++ S S +E T D + +N+G+RML++MGW E
Sbjct: 881 RDRAAERREKYGIPEPPEPKRRKYSGMSAASVDFEQPTRD-GLGSDNIGSRMLQAMGWKE 939
Query: 989 GLGLGKDGSGMIEPVQAQAMDSRAGLGSQQKKVDPSLEVQAGDSYKTLIHKKALARFRE 1047
G GLG+ G++ P++AQ +GLG++ S V + +SYK +HK + RF E
Sbjct: 940 GSGLGRKKQGIVTPIEAQTRVRGSGLGARGS----SYGVTSTESYKETLHKTMVTRFNE 994
Score = 151 (58.2 bits), Expect = 6.1e-32, Sum P(4) = 6.1e-32
Identities = 59/259 (22%), Positives = 117/259 (45%)
Query: 286 SGTIVVKGLSQKTTEEDLYQILAEWG-PLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
S ++++ L Q TE+D+ L G R VR+++ ++SG SRGFAF++F + A
Sbjct: 193 SNIVMLRMLPQAATEDDIRGQLQSHGIQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRW 252
Query: 345 MDRIGDDGLVVDGRKLFFEYSS-KPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICG 403
M+ L + G+K+ YS KP ++ + + S +ST C
Sbjct: 253 MEA-NQHSLNILGQKVSMHYSDPKPKINEDWLCNKDRKV-MKVSEKESTFWCGMPLAEAE 310
Query: 404 C-----VNFARRTSCFQCNEARTDDAP---PAEMN---SSNPIPLGKKGSDTGPTHVLVV 452
++T E P P + +S + G + S +++
Sbjct: 311 QKLPLGARLDQQTLPLGGRELSQGLLPLPQPYQAQGVLASQALSQGSEPSSENANDTIIL 370
Query: 453 RGLDEYADEEMLRYEFSKHAPIK--DLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATN 510
R L+ ++ + + + +A + ++R+++DK T ++RGFAF+ ++ +A++ L+
Sbjct: 371 RNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTIVEAAQLLQILQ 430
Query: 511 GT--TLEKNGQILRVAYAK 527
L +G+ + V +AK
Sbjct: 431 ALHPPLTIDGKTINVEFAK 449
Score = 143 (55.4 bits), Expect = 6.1e-32, Sum P(4) = 6.1e-32
Identities = 46/180 (25%), Positives = 73/180 (40%)
Query: 598 SGFVWDEASGYYYDAASGFYYDGNTGLYYDGNSGIWYSYDQQTQQYIPCTDQNDNKTSGN 657
S + +DE SGYYYD +G YYD N+ YY+ S + +D + + Y+P +Q+ +
Sbjct: 636 STYQYDETSGYYYDPQTGLYYDPNSQYYYNAQSQQYLYWDGERRTYVPALEQSADGHKET 695
Query: 658 GSEPSKQVDGGSKNRKVVISAPAATVSSVEKPA-SLPDAVQXXXXXXXXXXXXXXXXXXX 716
G+ PSK+ G K K +E+ A SL +
Sbjct: 696 GA-PSKE--GKEKKEKHKTKTAQQIAKDMERWARSLNKQKENFKNSFQPISNLRDDERRE 752
Query: 717 XXXXXXXTIVANKKKLNNATMWKQWSHDNQQSASADDRPGPA-GQASKTKFKSDSAATKE 775
+ KK A +Q + + ++DDRP P G + +SDS +E
Sbjct: 753 SATADAGYAILEKK---GALAERQHTSMDLPKLASDDRPSPPRGLVAAYSGESDSEEEQE 809
Score = 69 (29.3 bits), Expect = 6.1e-32, Sum P(4) = 6.1e-32
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 879 KRRFSEMPLPPATQKEQPQTTYRDRAAERRSLYG 912
+ SE L + + Q YRDRAAERR YG
Sbjct: 859 RAHLSENELEALEKNDMEQMKYRDRAAERREKYG 892
Score = 49 (22.3 bits), Expect = 9.0e-20, Sum P(3) = 9.0e-20
Identities = 12/56 (21%), Positives = 28/56 (50%)
Query: 849 NSDTITAVTP--FRTDASAL---GSYTPPVATGSGKRRFSEMPLPPATQKEQPQTT 899
NS + T ++P +++ + S PP + S + +S+ P+P + + +T+
Sbjct: 589 NSQSYTIISPAVLKSELQSPTHPSSTLPPATSPSAQESYSQYPVPDVSTYQYDETS 644
>UNIPROTKB|F1RWX6 [details] [associations]
symbol:LOC100525622 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0034393 "positive regulation of smooth muscle
cell apoptotic process" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000467 InterPro:IPR000504
InterPro:IPR007087 InterPro:IPR012677 InterPro:IPR015880
Pfam:PF01585 PROSITE:PS50102 PROSITE:PS50157 PROSITE:PS50174
SMART:SM00355 SMART:SM00360 SMART:SM00443 GO:GO:0000166
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00510000046476 GO:GO:0016585 OMA:NQHSLNI
EMBL:FP710256 Ensembl:ENSSSCT00000013419 Uniprot:F1RWX6
Length = 788
Score = 175 (66.7 bits), Expect = 8.6e-32, Sum P(5) = 8.6e-32
Identities = 44/120 (36%), Positives = 67/120 (55%)
Query: 931 RDFALKKGSVDSMPFPPGVGGR---GFTADSVQSYEVITADKAIDENNVGNRMLRSMGWH 987
RD A ++ +P PP R G +A SV +E T D + +N+G+RML++MGW
Sbjct: 673 RDRAAERREKYGIPEPPEPKRRKYGGMSAASVD-FEQPTRD-GLGSDNIGSRMLQAMGWK 730
Query: 988 EGLGLGKDGSGMIEPVQAQAMDSRAGLGSQQKKVDPSLEVQAGDSYKTLIHKKALARFRE 1047
EG GLG+ G++ P++AQ +GLG++ S V + +SYK +HK + RF E
Sbjct: 731 EGSGLGRKKQGIVTPIEAQTRVRGSGLGARGS----SYGVTSTESYKETLHKTMVTRFNE 786
Score = 144 (55.7 bits), Expect = 8.6e-32, Sum P(5) = 8.6e-32
Identities = 46/180 (25%), Positives = 73/180 (40%)
Query: 598 SGFVWDEASGYYYDAASGFYYDGNTGLYYDGNSGIWYSYDQQTQQYIPCTDQNDNKTSGN 657
S + +DE SGYYYD +G YYD N+ YY+ S + +D + + Y+P +Q+ +
Sbjct: 428 STYQYDETSGYYYDPQTGLYYDPNSQYYYNAQSQQYLYWDGERRTYVPALEQSADGHKET 487
Query: 658 GSEPSKQVDGGSKNRKVVISAPAATVSSVEKPA-SLPDAVQXXXXXXXXXXXXXXXXXXX 716
G+ PSK+ G K K +E+ A SL +
Sbjct: 488 GA-PSKE--GKEKKEKHKTKTAQQIAKDMERWARSLNKQKENFKNSFQPISSLRDDERRE 544
Query: 717 XXXXXXXTIVANKKKLNNATMWKQWSHDNQQSASADDRPGPA-GQASKTKFKSDSAATKE 775
+ KK A +Q + + ++DDRP P G + +SDS +E
Sbjct: 545 SATADAGYAILEKK---GALAERQHTSMDLPKLASDDRPSPPRGLVAAYSGESDSEEEQE 601
Score = 96 (38.9 bits), Expect = 8.6e-32, Sum P(5) = 8.6e-32
Identities = 22/101 (21%), Positives = 54/101 (53%)
Query: 431 SSNPIPLGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIK--DLRLVRDKFTHVS 488
+S + G + S +++R L+ ++ + + + +A + ++R+++DK T ++
Sbjct: 140 ASQALSQGSEPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLN 199
Query: 489 RGFAFLHFHSVEDASKALEATNGT--TLEKNGQILRVAYAK 527
RGFAF+ ++ +A++ L+ L +G+ + V +AK
Sbjct: 200 RGFAFIQLSTIVEAAQLLQILQALHPPLTIDGKTINVEFAK 240
Score = 94 (38.1 bits), Expect = 9.6e-27, Sum P(4) = 9.6e-27
Identities = 23/82 (28%), Positives = 47/82 (57%)
Query: 288 TIVVKGLSQKTTEEDLYQILAEWGPLR--HVRVIKERNSGVSRGFAFIDFPSVGAARAMM 345
TI+++ L+ +T + + LA + L +VRVIK++ + ++RGFAFI ++ A ++
Sbjct: 158 TIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTIVEAAQLL 217
Query: 346 DRIG--DDGLVVDGRKLFFEYS 365
+ L +DG+ + E++
Sbjct: 218 QILQALHPPLTIDGKTINVEFA 239
Score = 91 (37.1 bits), Expect = 1.9e-26, Sum P(4) = 1.9e-26
Identities = 22/64 (34%), Positives = 40/64 (62%)
Query: 464 LRYEFSKHA-PIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILR 522
+R + H +++RL+R+K + SRGFAF+ F ++DA++ +EA N +L GQ +
Sbjct: 1 IRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEA-NQHSLNILGQKVS 59
Query: 523 VAYA 526
+ Y+
Sbjct: 60 MHYS 63
Score = 88 (36.0 bits), Expect = 8.6e-32, Sum P(5) = 8.6e-32
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 314 RHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYSS-KP 368
R VR+++ ++SG SRGFAF++F + A M+ L + G+K+ YS KP
Sbjct: 13 REVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEA-NQHSLNILGQKVSMHYSDPKP 67
Score = 69 (29.3 bits), Expect = 8.6e-32, Sum P(5) = 8.6e-32
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 879 KRRFSEMPLPPATQKEQPQTTYRDRAAERRSLYG 912
+ SE L + + Q YRDRAAERR YG
Sbjct: 651 RAHLSENELEALEKNDMEQMKYRDRAAERREKYG 684
Score = 55 (24.4 bits), Expect = 9.1e-23, Sum P(4) = 9.1e-23
Identities = 20/73 (27%), Positives = 29/73 (39%)
Query: 377 GQESAMGARHSNHKSTIPCDWMCTI-CGCVNFARRTSCFQCNEARTD---DAPPAEMNSS 432
GQ+ +M +S+ K I DW+C C V RR +C T+ P
Sbjct: 55 GQKVSM--HYSDPKPKINEDWLCNKPCDVVGAGRRLRGRRCGRPLTEAEQKLPLGARLDQ 112
Query: 433 NPIPLGKKGSDTG 445
+PLG + G
Sbjct: 113 QTLPLGGRELSQG 125
Score = 44 (20.5 bits), Expect = 1.0e-18, Sum P(4) = 1.0e-18
Identities = 11/56 (19%), Positives = 28/56 (50%)
Query: 849 NSDTITAVTP--FRTDASAL---GSYTPPVATGSGKRRFSEMPLPPATQKEQPQTT 899
NS + T ++P +++ + S PP + + + +S+ P+P + + +T+
Sbjct: 381 NSQSYTIMSPAVLKSELQSPTHPSSSLPPATSPTAQESYSQYPVPDVSTYQYDETS 436
>RGD|631366 [details] [associations]
symbol:Rbm10 "RNA binding motif protein 10" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IEA;ISO] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008285 "negative regulation of cell proliferation"
evidence=IEA;ISO] [GO:0034391 "regulation of smooth muscle cell
apoptotic process" evidence=ISO] [GO:0034393 "positive regulation
of smooth muscle cell apoptotic process" evidence=IEA;ISO]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000467
InterPro:IPR000504 InterPro:IPR001876 InterPro:IPR007087
InterPro:IPR012677 InterPro:IPR015880 Pfam:PF00641 Pfam:PF01585
PROSITE:PS01358 PROSITE:PS50102 PROSITE:PS50157 PROSITE:PS50174
PROSITE:PS50199 SMART:SM00355 SMART:SM00360 SMART:SM00443
SMART:SM00547 RGD:631366 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0016585 CTD:8241
eggNOG:NOG290849 HOVERGEN:HBG000318 KO:K13094 EMBL:D83948
IPI:IPI00189558 RefSeq:NP_690600.1 UniGene:Rn.8822
ProteinModelPortal:P70501 PhosphoSite:P70501 PRIDE:P70501
GeneID:64510 KEGG:rno:64510 UCSC:RGD:631366 NextBio:613290
Genevestigator:P70501 Uniprot:P70501
Length = 852
Score = 172 (65.6 bits), Expect = 4.0e-31, Sum P(5) = 4.0e-31
Identities = 42/119 (35%), Positives = 65/119 (54%)
Query: 931 RDFALKKGSVDSMPFPPGVGGRGFTADSVQS--YEVITADKAIDENNVGNRMLRSMGWHE 988
RD A ++ +P PP R + S S +E T D + +N+G+RML++MGW E
Sbjct: 737 RDRAAERREKYGIPEPPEPKRRKYGGISTASVDFEQPTRD-GLGSDNIGSRMLQAMGWKE 795
Query: 989 GLGLGKDGSGMIEPVQAQAMDSRAGLGSQQKKVDPSLEVQAGDSYKTLIHKKALARFRE 1047
G GLG+ G++ P++AQ +GLG++ S V + +SYK +HK + RF E
Sbjct: 796 GSGLGRKKQGIVTPIEAQTRVRGSGLGARGS----SYGVTSTESYKETLHKTMVTRFNE 850
Score = 139 (54.0 bits), Expect = 4.0e-31, Sum P(5) = 4.0e-31
Identities = 46/180 (25%), Positives = 72/180 (40%)
Query: 598 SGFVWDEASGYYYDAASGFYYDGNTGLYYDGNSGIWYSYDQQTQQYIPCTDQNDNKTSGN 657
S + +DE SGYYYD +G YYD N+ YY+ S + +D + + YIP +Q+ +
Sbjct: 492 STYQYDETSGYYYDPQTGLYYDPNSQYYYNAQSQQYLYWDGERRTYIPALEQSADGHKDT 551
Query: 658 GSEPSKQVDGGSKNRKVVISAPAATVSSVEKPA-SLPDAVQXXXXXXXXXXXXXXXXXXX 716
G+ SK+ G K K +E+ A SL +
Sbjct: 552 GAS-SKE--GKEKKEKHKTKTAQQIAKDMERWARSLNKQKENFKNSFQPISALRDDERRE 608
Query: 717 XXXXXXXTIVANKKKLNNATMWKQWSHDNQQSASADDRPGPA-GQASKTKFKSDSAATKE 775
+ KK A +Q + + ++DDRP P G + +SDS +E
Sbjct: 609 SATADAGYAILEKK---GALAERQHTSMDLPKLASDDRPSPPRGLVAAYSGESDSEEEQE 665
Score = 98 (39.6 bits), Expect = 4.0e-31, Sum P(5) = 4.0e-31
Identities = 23/72 (31%), Positives = 34/72 (47%)
Query: 377 GQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTD---DAPPAEMNSSN 433
GQ+ +M +S+ K I DW+C CG NF RR CF+C +++ P
Sbjct: 122 GQKVSM--HYSDPKPKINEDWLCNKCGVQNFKRREKCFKCGVPKSEAEQKLPLGTRLDQQ 179
Query: 434 PIPLGKKGSDTG 445
+PLG + G
Sbjct: 180 ALPLGGRELSQG 191
Score = 96 (38.9 bits), Expect = 6.3e-31, Sum P(5) = 6.3e-31
Identities = 22/101 (21%), Positives = 54/101 (53%)
Query: 431 SSNPIPLGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIK--DLRLVRDKFTHVS 488
+S + G + S +++R L+ ++ + + + +A + ++R+++DK T ++
Sbjct: 206 TSQALSQGSEPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLN 265
Query: 489 RGFAFLHFHSVEDASKALEATNGT--TLEKNGQILRVAYAK 527
RGFAF+ ++ +A++ L+ L +G+ + V +AK
Sbjct: 266 RGFAFIQLSTIVEAAQLLQILQALHPPLTIDGKTINVEFAK 306
Score = 96 (38.9 bits), Expect = 6.3e-26, Sum P(4) = 6.3e-26
Identities = 28/79 (35%), Positives = 46/79 (58%)
Query: 454 GLDEYAD--EEM---LRYEFSKHA-PIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALE 507
G EY D EE +R + H +++RL+R+K + SRGFAF+ F ++DA++ +E
Sbjct: 53 GKHEYDDSSEEQSAEIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWME 112
Query: 508 ATNGTTLEKNGQILRVAYA 526
A N +L GQ + + Y+
Sbjct: 113 A-NQHSLNILGQKVSMHYS 130
Score = 94 (38.1 bits), Expect = 1.0e-25, Sum P(4) = 1.0e-25
Identities = 23/82 (28%), Positives = 47/82 (57%)
Query: 288 TIVVKGLSQKTTEEDLYQILAEWGPLR--HVRVIKERNSGVSRGFAFIDFPSVGAARAMM 345
TI+++ L+ +T + + LA + L +VRVIK++ + ++RGFAFI ++ A ++
Sbjct: 224 TIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTIVEAAQLL 283
Query: 346 DRIG--DDGLVVDGRKLFFEYS 365
+ L +DG+ + E++
Sbjct: 284 QILQALHPPLTIDGKTINVEFA 305
Score = 90 (36.7 bits), Expect = 4.0e-31, Sum P(5) = 4.0e-31
Identities = 24/75 (32%), Positives = 41/75 (54%)
Query: 295 SQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLV 354
S++ + E Q+ + R VR+++ ++SG SRGFAF++F + A M+ L
Sbjct: 61 SEEQSAEIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEA-NQHSLN 119
Query: 355 VDGRKLFFEYSS-KP 368
+ G+K+ YS KP
Sbjct: 120 ILGQKVSMHYSDPKP 134
Score = 69 (29.3 bits), Expect = 4.0e-31, Sum P(5) = 4.0e-31
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 879 KRRFSEMPLPPATQKEQPQTTYRDRAAERRSLYG 912
+ SE L + + Q YRDRAAERR YG
Sbjct: 715 RAHLSENELEALEKNDMEQMKYRDRAAERREKYG 748
Score = 42 (19.8 bits), Expect = 2.1e-18, Sum P(4) = 2.1e-18
Identities = 11/56 (19%), Positives = 27/56 (48%)
Query: 849 NSDTITAVTP--FRTDASAL---GSYTPPVATGSGKRRFSEMPLPPATQKEQPQTT 899
NS + T ++P +++ + S PP + + +S+ P+P + + +T+
Sbjct: 445 NSQSYTIMSPAVLKSELQSPTHPSSALPPATSPTAPESYSQYPVPDVSTYQYDETS 500
>UNIPROTKB|P70501 [details] [associations]
symbol:Rbm10 "RNA-binding protein 10" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000467
InterPro:IPR000504 InterPro:IPR001876 InterPro:IPR007087
InterPro:IPR012677 InterPro:IPR015880 Pfam:PF00641 Pfam:PF01585
PROSITE:PS01358 PROSITE:PS50102 PROSITE:PS50157 PROSITE:PS50174
PROSITE:PS50199 SMART:SM00355 SMART:SM00360 SMART:SM00443
SMART:SM00547 RGD:631366 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0016585 CTD:8241
eggNOG:NOG290849 HOVERGEN:HBG000318 KO:K13094 EMBL:D83948
IPI:IPI00189558 RefSeq:NP_690600.1 UniGene:Rn.8822
ProteinModelPortal:P70501 PhosphoSite:P70501 PRIDE:P70501
GeneID:64510 KEGG:rno:64510 UCSC:RGD:631366 NextBio:613290
Genevestigator:P70501 Uniprot:P70501
Length = 852
Score = 172 (65.6 bits), Expect = 4.0e-31, Sum P(5) = 4.0e-31
Identities = 42/119 (35%), Positives = 65/119 (54%)
Query: 931 RDFALKKGSVDSMPFPPGVGGRGFTADSVQS--YEVITADKAIDENNVGNRMLRSMGWHE 988
RD A ++ +P PP R + S S +E T D + +N+G+RML++MGW E
Sbjct: 737 RDRAAERREKYGIPEPPEPKRRKYGGISTASVDFEQPTRD-GLGSDNIGSRMLQAMGWKE 795
Query: 989 GLGLGKDGSGMIEPVQAQAMDSRAGLGSQQKKVDPSLEVQAGDSYKTLIHKKALARFRE 1047
G GLG+ G++ P++AQ +GLG++ S V + +SYK +HK + RF E
Sbjct: 796 GSGLGRKKQGIVTPIEAQTRVRGSGLGARGS----SYGVTSTESYKETLHKTMVTRFNE 850
Score = 139 (54.0 bits), Expect = 4.0e-31, Sum P(5) = 4.0e-31
Identities = 46/180 (25%), Positives = 72/180 (40%)
Query: 598 SGFVWDEASGYYYDAASGFYYDGNTGLYYDGNSGIWYSYDQQTQQYIPCTDQNDNKTSGN 657
S + +DE SGYYYD +G YYD N+ YY+ S + +D + + YIP +Q+ +
Sbjct: 492 STYQYDETSGYYYDPQTGLYYDPNSQYYYNAQSQQYLYWDGERRTYIPALEQSADGHKDT 551
Query: 658 GSEPSKQVDGGSKNRKVVISAPAATVSSVEKPA-SLPDAVQXXXXXXXXXXXXXXXXXXX 716
G+ SK+ G K K +E+ A SL +
Sbjct: 552 GAS-SKE--GKEKKEKHKTKTAQQIAKDMERWARSLNKQKENFKNSFQPISALRDDERRE 608
Query: 717 XXXXXXXTIVANKKKLNNATMWKQWSHDNQQSASADDRPGPA-GQASKTKFKSDSAATKE 775
+ KK A +Q + + ++DDRP P G + +SDS +E
Sbjct: 609 SATADAGYAILEKK---GALAERQHTSMDLPKLASDDRPSPPRGLVAAYSGESDSEEEQE 665
Score = 98 (39.6 bits), Expect = 4.0e-31, Sum P(5) = 4.0e-31
Identities = 23/72 (31%), Positives = 34/72 (47%)
Query: 377 GQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTD---DAPPAEMNSSN 433
GQ+ +M +S+ K I DW+C CG NF RR CF+C +++ P
Sbjct: 122 GQKVSM--HYSDPKPKINEDWLCNKCGVQNFKRREKCFKCGVPKSEAEQKLPLGTRLDQQ 179
Query: 434 PIPLGKKGSDTG 445
+PLG + G
Sbjct: 180 ALPLGGRELSQG 191
Score = 96 (38.9 bits), Expect = 6.3e-31, Sum P(5) = 6.3e-31
Identities = 22/101 (21%), Positives = 54/101 (53%)
Query: 431 SSNPIPLGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIK--DLRLVRDKFTHVS 488
+S + G + S +++R L+ ++ + + + +A + ++R+++DK T ++
Sbjct: 206 TSQALSQGSEPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLN 265
Query: 489 RGFAFLHFHSVEDASKALEATNGT--TLEKNGQILRVAYAK 527
RGFAF+ ++ +A++ L+ L +G+ + V +AK
Sbjct: 266 RGFAFIQLSTIVEAAQLLQILQALHPPLTIDGKTINVEFAK 306
Score = 96 (38.9 bits), Expect = 6.3e-26, Sum P(4) = 6.3e-26
Identities = 28/79 (35%), Positives = 46/79 (58%)
Query: 454 GLDEYAD--EEM---LRYEFSKHA-PIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALE 507
G EY D EE +R + H +++RL+R+K + SRGFAF+ F ++DA++ +E
Sbjct: 53 GKHEYDDSSEEQSAEIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWME 112
Query: 508 ATNGTTLEKNGQILRVAYA 526
A N +L GQ + + Y+
Sbjct: 113 A-NQHSLNILGQKVSMHYS 130
Score = 94 (38.1 bits), Expect = 1.0e-25, Sum P(4) = 1.0e-25
Identities = 23/82 (28%), Positives = 47/82 (57%)
Query: 288 TIVVKGLSQKTTEEDLYQILAEWGPLR--HVRVIKERNSGVSRGFAFIDFPSVGAARAMM 345
TI+++ L+ +T + + LA + L +VRVIK++ + ++RGFAFI ++ A ++
Sbjct: 224 TIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTIVEAAQLL 283
Query: 346 DRIG--DDGLVVDGRKLFFEYS 365
+ L +DG+ + E++
Sbjct: 284 QILQALHPPLTIDGKTINVEFA 305
Score = 90 (36.7 bits), Expect = 4.0e-31, Sum P(5) = 4.0e-31
Identities = 24/75 (32%), Positives = 41/75 (54%)
Query: 295 SQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLV 354
S++ + E Q+ + R VR+++ ++SG SRGFAF++F + A M+ L
Sbjct: 61 SEEQSAEIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEA-NQHSLN 119
Query: 355 VDGRKLFFEYSS-KP 368
+ G+K+ YS KP
Sbjct: 120 ILGQKVSMHYSDPKP 134
Score = 69 (29.3 bits), Expect = 4.0e-31, Sum P(5) = 4.0e-31
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 879 KRRFSEMPLPPATQKEQPQTTYRDRAAERRSLYG 912
+ SE L + + Q YRDRAAERR YG
Sbjct: 715 RAHLSENELEALEKNDMEQMKYRDRAAERREKYG 748
Score = 42 (19.8 bits), Expect = 2.1e-18, Sum P(4) = 2.1e-18
Identities = 11/56 (19%), Positives = 27/56 (48%)
Query: 849 NSDTITAVTP--FRTDASAL---GSYTPPVATGSGKRRFSEMPLPPATQKEQPQTT 899
NS + T ++P +++ + S PP + + +S+ P+P + + +T+
Sbjct: 445 NSQSYTIMSPAVLKSELQSPTHPSSALPPATSPTAPESYSQYPVPDVSTYQYDETS 500
>UNIPROTKB|F1PDM2 [details] [associations]
symbol:RBM10 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000467 InterPro:IPR000504
InterPro:IPR007087 InterPro:IPR012677 InterPro:IPR015880
Pfam:PF01585 PROSITE:PS50102 PROSITE:PS50157 PROSITE:PS50174
SMART:SM00355 SMART:SM00360 SMART:SM00443 GO:GO:0000166
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GeneTree:ENSGT00510000046476 OMA:NQHSLNI EMBL:AAEX03026316
EMBL:AAEX03026318 EMBL:AAEX03026317 Ensembl:ENSCAFT00000023612
Uniprot:F1PDM2
Length = 995
Score = 175 (66.7 bits), Expect = 1.7e-30, Sum P(4) = 1.7e-30
Identities = 44/120 (36%), Positives = 67/120 (55%)
Query: 931 RDFALKKGSVDSMPFPPGVGGR---GFTADSVQSYEVITADKAIDENNVGNRMLRSMGWH 987
RD A ++ +P PP R G +A SV +E T D + +N+G+RML++MGW
Sbjct: 880 RDRAAERREKYGIPEPPEPKRRKYGGMSAASVD-FEQPTRD-GLGSDNIGSRMLQAMGWK 937
Query: 988 EGLGLGKDGSGMIEPVQAQAMDSRAGLGSQQKKVDPSLEVQAGDSYKTLIHKKALARFRE 1047
EG GLG+ G++ P++AQ +GLG++ S V + +SYK +HK + RF E
Sbjct: 938 EGSGLGRKKQGIVTPIEAQTRVRGSGLGARGS----SYGVTSTESYKETLHKTMVTRFNE 993
Score = 144 (55.7 bits), Expect = 1.7e-30, Sum P(4) = 1.7e-30
Identities = 46/180 (25%), Positives = 73/180 (40%)
Query: 598 SGFVWDEASGYYYDAASGFYYDGNTGLYYDGNSGIWYSYDQQTQQYIPCTDQNDNKTSGN 657
S + +DE SGYYYD +G YYD N+ YY+ S + +D + + Y+P +Q+ +
Sbjct: 635 STYQYDETSGYYYDPQTGLYYDPNSQYYYNAQSQQYLYWDGERRTYVPALEQSADGHKET 694
Query: 658 GSEPSKQVDGGSKNRKVVISAPAATVSSVEKPA-SLPDAVQXXXXXXXXXXXXXXXXXXX 716
G+ PSK+ G K K +E+ A SL +
Sbjct: 695 GA-PSKE--GKEKKEKHKTKTAQQIAKDMERWARSLNKQKENFKNSFQPISSLRDDERRE 751
Query: 717 XXXXXXXTIVANKKKLNNATMWKQWSHDNQQSASADDRPGPA-GQASKTKFKSDSAATKE 775
+ KK A +Q + + ++DDRP P G + +SDS +E
Sbjct: 752 SATADAGYAILEKK---GALAERQHTSMDLPKLASDDRPSPPRGLVAAYSGESDSEEEQE 808
Score = 136 (52.9 bits), Expect = 1.7e-30, Sum P(4) = 1.7e-30
Identities = 59/261 (22%), Positives = 115/261 (44%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNS---GVSRGFAFIDFPSVGAA 341
PS ++++ L Q E+D+ L+ +R +R IK R + G SRGFAF++F + A
Sbjct: 192 PSNIVMLRMLPQAAPEDDVRAPLS--AHVRKMRKIKPRGNKSPGQSRGFAFVEFSHLQDA 249
Query: 342 RAMMDRIGDDGLVVDGRKLFFEYSSKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTI 401
M+ L + G+K+ YS P + G R N +++ C T
Sbjct: 250 TRWMEA-NQHSLNILGQKVSMHYSD-PKPKINEDWLCNKVQG-RFLNREASFRCGGPLTE 306
Query: 402 CGC-----VNFARRTSCFQCNEARTDDAP---PAEMN---SSNPIPLGKKGSDTGPTHVL 450
++T E P P + +S + G + S +
Sbjct: 307 AEQKLPLGARLDQQTLPLGGRELSQGLLPLPQPYQAQGVLASQALSQGSEPSSENANDTI 366
Query: 451 VVRGLDEYADEEMLRYEFSKHAPIK--DLRLVRDKFTHVSRGFAFLHFHSVEDASKALEA 508
++R L+ ++ + + + +A + ++R+++DK T ++RGFAF+ ++ +A++ L+
Sbjct: 367 ILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTIVEAAQLLQI 426
Query: 509 TNGT--TLEKNGQILRVAYAK 527
L +G+ + V +AK
Sbjct: 427 LQALHPPLTIDGKTINVEFAK 447
Score = 69 (29.3 bits), Expect = 1.7e-30, Sum P(4) = 1.7e-30
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 879 KRRFSEMPLPPATQKEQPQTTYRDRAAERRSLYG 912
+ SE L + + Q YRDRAAERR YG
Sbjct: 858 RAHLSENELEALEKNDMEQMKYRDRAAERREKYG 891
Score = 44 (20.5 bits), Expect = 1.0e-17, Sum P(3) = 1.0e-17
Identities = 11/56 (19%), Positives = 28/56 (50%)
Query: 849 NSDTITAVTP--FRTDASAL---GSYTPPVATGSGKRRFSEMPLPPATQKEQPQTT 899
NS + T ++P +++ + S PP + + + +S+ P+P + + +T+
Sbjct: 588 NSQSYTIMSPAVLKSELQSPTHPSSALPPATSPTAQESYSQYPVPDVSTYQYDETS 643
>UNIPROTKB|J9P453 [details] [associations]
symbol:RBM10 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000467 InterPro:IPR000504
InterPro:IPR001876 InterPro:IPR007087 InterPro:IPR012677
InterPro:IPR015880 Pfam:PF00641 Pfam:PF01585 PROSITE:PS01358
PROSITE:PS50102 PROSITE:PS50157 PROSITE:PS50174 PROSITE:PS50199
SMART:SM00355 SMART:SM00360 SMART:SM00443 SMART:SM00547
GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005622 GeneTree:ENSGT00510000046476 EMBL:AAEX03026316
EMBL:AAEX03026318 EMBL:AAEX03026317 Ensembl:ENSCAFT00000046659
Uniprot:J9P453
Length = 768
Score = 175 (66.7 bits), Expect = 2.5e-29, Sum P(5) = 2.5e-29
Identities = 44/120 (36%), Positives = 67/120 (55%)
Query: 931 RDFALKKGSVDSMPFPPGVGGR---GFTADSVQSYEVITADKAIDENNVGNRMLRSMGWH 987
RD A ++ +P PP R G +A SV +E T D + +N+G+RML++MGW
Sbjct: 653 RDRAAERREKYGIPEPPEPKRRKYGGMSAASVD-FEQPTRD-GLGSDNIGSRMLQAMGWK 710
Query: 988 EGLGLGKDGSGMIEPVQAQAMDSRAGLGSQQKKVDPSLEVQAGDSYKTLIHKKALARFRE 1047
EG GLG+ G++ P++AQ +GLG++ S V + +SYK +HK + RF E
Sbjct: 711 EGSGLGRKKQGIVTPIEAQTRVRGSGLGARGS----SYGVTSTESYKETLHKTMVTRFNE 766
Score = 144 (55.7 bits), Expect = 2.5e-29, Sum P(5) = 2.5e-29
Identities = 46/180 (25%), Positives = 73/180 (40%)
Query: 598 SGFVWDEASGYYYDAASGFYYDGNTGLYYDGNSGIWYSYDQQTQQYIPCTDQNDNKTSGN 657
S + +DE SGYYYD +G YYD N+ YY+ S + +D + + Y+P +Q+ +
Sbjct: 408 STYQYDETSGYYYDPQTGLYYDPNSQYYYNAQSQQYLYWDGERRTYVPALEQSADGHKET 467
Query: 658 GSEPSKQVDGGSKNRKVVISAPAATVSSVEKPA-SLPDAVQXXXXXXXXXXXXXXXXXXX 716
G+ PSK+ G K K +E+ A SL +
Sbjct: 468 GA-PSKE--GKEKKEKHKTKTAQQIAKDMERWARSLNKQKENFKNSFQPISSLRDDERRE 524
Query: 717 XXXXXXXTIVANKKKLNNATMWKQWSHDNQQSASADDRPGPA-GQASKTKFKSDSAATKE 775
+ KK A +Q + + ++DDRP P G + +SDS +E
Sbjct: 525 SATADAGYAILEKK---GALAERQHTSMDLPKLASDDRPSPPRGLVAAYSGESDSEEEQE 581
Score = 98 (39.6 bits), Expect = 3.2e-27, Sum P(4) = 3.2e-27
Identities = 23/72 (31%), Positives = 34/72 (47%)
Query: 377 GQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTD---DAPPAEMNSSN 433
GQ+ +M +S+ K I DW+C CG NF RR CF+C +++ P
Sbjct: 36 GQKVSM--HYSDPKPKINEDWLCNKCGVQNFKRREKCFKCGVPKSEAEQKLPLGARLDQQ 93
Query: 434 PIPLGKKGSDTG 445
+PLG + G
Sbjct: 94 TLPLGGRELSQG 105
Score = 96 (38.9 bits), Expect = 2.5e-29, Sum P(5) = 2.5e-29
Identities = 22/101 (21%), Positives = 54/101 (53%)
Query: 431 SSNPIPLGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIK--DLRLVRDKFTHVS 488
+S + G + S +++R L+ ++ + + + +A + ++R+++DK T ++
Sbjct: 120 ASQALSQGSEPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLN 179
Query: 489 RGFAFLHFHSVEDASKALEATNGT--TLEKNGQILRVAYAK 527
RGFAF+ ++ +A++ L+ L +G+ + V +AK
Sbjct: 180 RGFAFIQLSTIVEAAQLLQILQALHPPLTIDGKTINVEFAK 220
Score = 94 (38.1 bits), Expect = 8.3e-27, Sum P(4) = 8.3e-27
Identities = 23/82 (28%), Positives = 47/82 (57%)
Query: 288 TIVVKGLSQKTTEEDLYQILAEWGPLR--HVRVIKERNSGVSRGFAFIDFPSVGAARAMM 345
TI+++ L+ +T + + LA + L +VRVIK++ + ++RGFAFI ++ A ++
Sbjct: 138 TIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTIVEAAQLL 197
Query: 346 DRIG--DDGLVVDGRKLFFEYS 365
+ L +DG+ + E++
Sbjct: 198 QILQALHPPLTIDGKTINVEFA 219
Score = 69 (29.3 bits), Expect = 2.5e-29, Sum P(5) = 2.5e-29
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 879 KRRFSEMPLPPATQKEQPQTTYRDRAAERRSLYG 912
+ SE L + + Q YRDRAAERR YG
Sbjct: 631 RAHLSENELEALEKNDMEQMKYRDRAAERREKYG 664
Score = 67 (28.6 bits), Expect = 4.7e-24, Sum P(4) = 4.7e-24
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 488 SRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYA 526
SRGFAF+ F ++DA++ +EA N +L GQ + + Y+
Sbjct: 7 SRGFAFVEFSHLQDATRWMEA-NQHSLNILGQKVSMHYS 44
Score = 63 (27.2 bits), Expect = 2.5e-29, Sum P(5) = 2.5e-29
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 325 GVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYSS-KP 368
G SRGFAF++F + A M+ L + G+K+ YS KP
Sbjct: 5 GQSRGFAFVEFSHLQDATRWMEA-NQHSLNILGQKVSMHYSDPKP 48
Score = 44 (20.5 bits), Expect = 3.0e-16, Sum P(4) = 3.0e-16
Identities = 11/56 (19%), Positives = 28/56 (50%)
Query: 849 NSDTITAVTP--FRTDASAL---GSYTPPVATGSGKRRFSEMPLPPATQKEQPQTT 899
NS + T ++P +++ + S PP + + + +S+ P+P + + +T+
Sbjct: 361 NSQSYTIMSPAVLKSELQSPTHPSSALPPATSPTAQESYSQYPVPDVSTYQYDETS 416
>DICTYBASE|DDB_G0269006 [details] [associations]
symbol:DDB_G0269006 "D111/G-patch domain-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000467
InterPro:IPR000504 InterPro:IPR001876 InterPro:IPR007087
InterPro:IPR012677 InterPro:IPR015880 Pfam:PF01585 PROSITE:PS01358
PROSITE:PS50102 PROSITE:PS50157 PROSITE:PS50174 SMART:SM00355
SMART:SM00360 SMART:SM00443 SMART:SM00547 dictyBase:DDB_G0269006
GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AAFI02000004 GO:GO:0005622 InterPro:IPR022755 Pfam:PF12171
eggNOG:NOG290849 KO:K13094 RefSeq:XP_646990.1
ProteinModelPortal:Q55EN0 EnsemblProtists:DDB0233764 GeneID:8616683
KEGG:ddi:DDB_G0269006 InParanoid:Q55EN0 OMA:QCNEPRA
ProtClustDB:CLSZ2846940 Uniprot:Q55EN0
Length = 914
Score = 171 (65.3 bits), Expect = 8.7e-29, Sum P(5) = 8.7e-29
Identities = 32/78 (41%), Positives = 45/78 (57%)
Query: 968 DKAIDENNVGNRMLRSMGWHEGLGLGKDGSGMIEPVQAQAMDSRAGLGSQQKKVDPSLEV 1027
D EN++G ++L+ GW +G GLGK+ GM +Q R+GLGSQ +DP +
Sbjct: 821 DSTFGENSIGVKLLKKTGWKQGEGLGKNSDGMTSTIQVTMKTERSGLGSQTN-IDPRFVI 879
Query: 1028 QAGDSYKTLIHKKALARF 1045
Q GD Y+T + KK RF
Sbjct: 880 QPGDDYQTRLKKKNFQRF 897
Score = 148 (57.2 bits), Expect = 8.7e-29, Sum P(5) = 8.7e-29
Identities = 37/138 (26%), Positives = 64/138 (46%)
Query: 561 AVGWAPKEYNPDDKQ----PTRGQEQRSDGDM-VQKDGLA-LQSGFVWDEASGYYYDAAS 614
++ +A Y K+ P G +SD D + G + + SGF + ASGYYY+ +
Sbjct: 359 SISYAKNNYENSSKKEVLDPNTGLT-KSDMDQWLNNYGASNIPSGFNFHAASGYYYNPET 417
Query: 615 GFYYDGNTGLY--YDGNSGIWYSYDQQTQQYIPCTDQNDNKTSGNGSEPSKQVDGGSKNR 672
++YD ++G+Y YD NS +Y YD T Y+P ++++K + S
Sbjct: 418 SYFYDHSSGVYFYYDNNSQAYYYYDSTTNSYLPFIPKSNDKAIDQSGTDAINTTMTSSTT 477
Query: 673 KVVISAPAATVSSVEKPA 690
+A T ++ P+
Sbjct: 478 TTTTTATTTTTATTSSPS 495
Score = 116 (45.9 bits), Expect = 4.8e-25, Sum P(5) = 4.8e-25
Identities = 32/97 (32%), Positives = 57/97 (58%)
Query: 430 NSSNPIPLGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSK-HAPIKDLRLVRDKFTHVS 488
N+ + KG + PT++L+++GL+ +EE L +F K + + L + DK +
Sbjct: 139 NNHHKSSSSSKGDE--PTNILMLKGLNNSINEERLS-DFMKVYGAFESLSIKYDKNGEI- 194
Query: 489 RGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525
RGFAF+++ +VE+AS L +T GT L +G + ++Y
Sbjct: 195 RGFAFVNYKTVEEASTILLSTGGT-LSIDGTRIYLSY 230
Score = 102 (41.0 bits), Expect = 8.7e-29, Sum P(5) = 8.7e-29
Identities = 22/80 (27%), Positives = 43/80 (53%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
P+ +++KGL+ EE L + +G + + ++N G RGFAF+++ +V A +
Sbjct: 153 PTNILMLKGLNNSINEERLSDFMKVYGAFESLSIKYDKN-GEIRGFAFVNYKTVEEASTI 211
Query: 345 MDRIGDDGLVVDGRKLFFEY 364
+ G L +DG +++ Y
Sbjct: 212 LLSTGGT-LSIDGTRIYLSY 230
Score = 88 (36.0 bits), Expect = 8.7e-29, Sum P(5) = 8.7e-29
Identities = 33/134 (24%), Positives = 62/134 (46%)
Query: 396 DWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKGSDTGPTHVLVVRGL 455
DW+C C N++ R SC +C+ T + P +N P + + P++ L++R L
Sbjct: 238 DWICETCNNSNYSWRPSCHKCHSNITRE-PRWVVNQ--PHQSQQYQENFIPSNTLILREL 294
Query: 456 DEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKAL-EATNGTTL 514
A +E+L FS+ K R+ K + GF + ++++ DA +
Sbjct: 295 SLLATDEILALCFSQFNR-KPKRVSVSKKRNNCIGF--VEYYAINDAIDVFTQCQKKLPY 351
Query: 515 EKNGQILRVAYAKS 528
+G + ++YAK+
Sbjct: 352 ICDGVVGSISYAKN 365
Score = 53 (23.7 bits), Expect = 4.8e-19, Sum P(4) = 4.8e-19
Identities = 17/59 (28%), Positives = 33/59 (55%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWG--PLRHVRVIKERNSGVSRGFAFIDFPSVGAA 341
PS T++++ LS T+E L +++ P R V V K+RN+ + F+++ ++ A
Sbjct: 285 PSNTLILRELSLLATDEILALCFSQFNRKPKR-VSVSKKRNNCIG----FVEYYAINDA 338
Score = 44 (20.5 bits), Expect = 1.5e-18, Sum P(4) = 1.5e-18
Identities = 13/48 (27%), Positives = 21/48 (43%)
Query: 848 VNSDTITAVTPFRTDASALGSYTPPVATGSGKRRFSEMPLPPATQKEQ 895
+ S T T T T +A S +P +AT + ++ P Q +Q
Sbjct: 472 MTSSTTTTTTTATTTTTATTS-SPSIATSTSTTLMTKTDTPTNDQTKQ 518
Score = 39 (18.8 bits), Expect = 1.4e-15, Sum P(4) = 1.4e-15
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 849 NSDTITAV--TPFRTDASALGSYT 870
NSD +T+ +T+ S LGS T
Sbjct: 848 NSDGMTSTIQVTMKTERSGLGSQT 871
Score = 38 (18.4 bits), Expect = 8.7e-29, Sum P(5) = 8.7e-29
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 848 VNSDTITAVTPFRTDASALGSYTPPVATGSGK 879
+N++ +TP S L + T +T +GK
Sbjct: 592 LNTEEYDPLTPDIISTSTLTTTTTATSTSTGK 623
Score = 38 (18.4 bits), Expect = 6.1e-18, Sum P(4) = 6.1e-18
Identities = 9/39 (23%), Positives = 17/39 (43%)
Query: 637 DQQTQQYIPCTDQNDNKTSGNGSEPSKQVDGGSKNRKVV 675
DQ + T+ N+N + N + S Q R+++
Sbjct: 686 DQGGESQKQNTNNNNNNNNNNSNNQSTQDQSKIVQRQII 724
Score = 37 (18.1 bits), Expect = 4.8e-25, Sum P(5) = 4.8e-25
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 356 DGRKLFFEYSSKPTGGSGGHYGQESAMGARHSNHKS 391
D R + YS++ GG G + +S +S
Sbjct: 82 DSRDGYNRYSNRGGGGGGRRKSYSRSRSRSYSRSRS 117
Score = 37 (18.1 bits), Expect = 7.8e-18, Sum P(4) = 7.8e-18
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 648 DQNDNKTSGNGSEPSKQ 664
+ N+N GN SE +K+
Sbjct: 802 NNNNNSGFGNNSESNKR 818
Score = 37 (18.1 bits), Expect = 7.8e-18, Sum P(4) = 7.8e-18
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 650 NDNKTSGNGSEPSKQVDGGSKNRKVVISAPAATVSSVEKPASL 692
+ + +SG GS S GG K K SA + K SL
Sbjct: 637 SSSSSSGGGSSSSS--GGGIKFSKPTTSAIKVVSPVIIKKQSL 677
>FB|FBgn0031319 [details] [associations]
symbol:CG4896 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR000467
InterPro:IPR000504 InterPro:IPR001876 InterPro:IPR012677
InterPro:IPR015880 Pfam:PF01585 PROSITE:PS01358 PROSITE:PS50102
PROSITE:PS50174 PROSITE:PS50199 SMART:SM00355 SMART:SM00360
SMART:SM00443 SMART:SM00547 EMBL:AE014134 GO:GO:0000166
GO:GO:0008270 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0005622
GeneTree:ENSGT00510000046476 KO:K13094 OMA:QCNEPRA
FlyBase:FBgn0031319 GenomeRNAi:33305 NextBio:782948
UniGene:Dm.30757 GeneID:33305 KEGG:dme:Dmel_CG4896
RefSeq:NP_722689.2 ProteinModelPortal:Q8IPW6 SMR:Q8IPW6
STRING:Q8IPW6 EnsemblMetazoa:FBtr0077970 UCSC:CG4896-RC
InParanoid:Q8IPW6 PhylomeDB:Q8IPW6 ArrayExpress:Q8IPW6 Bgee:Q8IPW6
Uniprot:Q8IPW6
Length = 968
Score = 139 (54.0 bits), Expect = 3.7e-27, Sum P(5) = 3.7e-27
Identities = 43/135 (31%), Positives = 62/135 (45%)
Query: 917 AGDDLPDVGSGDSNRDFALKKGSVDSMPFPPGVGGRGFTAD--SVQSYEV----ITADKA 970
AG D + D ++ LK G D P PP F + ++QS + TA
Sbjct: 840 AGTD-EGLSYRDRAKERRLKYGESD--PPPPNRSRERFEQEIKTLQSRQKDSFGATAAMP 896
Query: 971 IDENNVGNRMLRSMGWHEGLGLGKDGSGMIEPVQAQAMDSRAGLGSQQKKVDPSLEVQAG 1030
I NVG+R+++ MGW EG GLGK G E ++A + GLG+ + P G
Sbjct: 897 ISSTNVGSRLMQKMGWSEGQGLGKKNQGRTEIIEADGRSNNVGLGNNTGHMAP------G 950
Query: 1031 DSYKTLIHKKALARF 1045
+ YK+ I K R+
Sbjct: 951 NDYKSYIKKMMKQRY 965
Score = 130 (50.8 bits), Expect = 3.7e-27, Sum P(5) = 3.7e-27
Identities = 37/126 (29%), Positives = 58/126 (46%)
Query: 396 DWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKGSDTGP---THVLVV 452
DW C CG NF RR C+ CN +R + S N + +G D T +++
Sbjct: 316 DWTCIKCGASNFKRRFQCYMCNASRAE--------SENALYGAGEGVDEISQILTKKIML 367
Query: 453 RGLDEYADEEMLRYEFSKHAP-----IKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALE 507
RGLD +EE + + P + + + RD T+ SRG +L+F ++ D+ +
Sbjct: 368 RGLDALTNEEGVLTALQQRLPELAKTVSKVLVSRDALTNASRGICYLNFDTLIDS---MN 424
Query: 508 ATNGTT 513
NG T
Sbjct: 425 VFNGLT 430
Score = 121 (47.7 bits), Expect = 3.7e-27, Sum P(5) = 3.7e-27
Identities = 20/50 (40%), Positives = 31/50 (62%)
Query: 598 SGFVWDEASGYYYDAASGFYYDGNTGLYYDGNSGIWYSYDQQTQQYIPCT 647
S + +DE SGYYYD +G YYD ++ YY+ +G + +DQ+ Y+ T
Sbjct: 586 SKYQYDETSGYYYDHVTGLYYDAHSQYYYNNETGAYLYWDQKRSTYVLAT 635
Score = 103 (41.3 bits), Expect = 2.4e-25, Sum P(5) = 2.4e-25
Identities = 20/41 (48%), Positives = 26/41 (63%)
Query: 604 EASGYYYDAASGFYYDGNTGLYYDGNSGIWYSYDQQTQQYI 644
+ S Y YD SG+YYD TGLYYD +S Y Y+ +T Y+
Sbjct: 584 DVSKYQYDETSGYYYDHVTGLYYDAHSQ--YYYNNETGAYL 622
Score = 92 (37.4 bits), Expect = 2.6e-18, Sum P(4) = 2.6e-18
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 441 GSDTGPTHVLVVRGLDEYADEEMLRYEFSK-HAPIKDLRLVRDKFTHVSRGFAFLHFHSV 499
GS P + +++ GL ++ E + E K +R++R + T SR FAF+ F +V
Sbjct: 225 GSSVEPLNNIILFGLKKHVTEADIMGELIKVDLEPTSIRVMRKQQTGASRCFAFVEFKTV 284
Query: 500 EDASKALEATNG 511
E+A++ +E T G
Sbjct: 285 EEATRWMELTQG 296
Score = 91 (37.1 bits), Expect = 3.7e-27, Sum P(5) = 3.7e-27
Identities = 25/86 (29%), Positives = 46/86 (53%)
Query: 282 AVAPSGTIVVKGLSQKTTEEDLYQ--ILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVG 339
+V P I++ GL + TE D+ I + P +RV++++ +G SR FAF++F +V
Sbjct: 227 SVEPLNNIILFGLKKHVTEADIMGELIKVDLEPTS-IRVMRKQQTGASRCFAFVEFKTVE 285
Query: 340 AARAMMDRIGDDGLVVDGRKLFFEYS 365
A M+ + L + ++ +YS
Sbjct: 286 EATRWME-LTQGVLQLGDHRVTMQYS 310
Score = 58 (25.5 bits), Expect = 5.9e-19, Sum P(5) = 5.9e-19
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 879 KRRFSEMPLPPATQKEQPQ-TTYRDRAAERRSLYGSS 914
K ++ PA + + +YRDRA ERR YG S
Sbjct: 826 KENLDKLKRNPAVEAGTDEGLSYRDRAKERRLKYGES 862
Score = 54 (24.1 bits), Expect = 3.7e-27, Sum P(5) = 3.7e-27
Identities = 36/182 (19%), Positives = 60/182 (32%)
Query: 32 GGSYDERRFLDERY-SRDNIYPRNAFQRENYPPPPVGLWPQSRRRNYEEDYSLDRESRRH 90
G RR+ R SR+ RN ++R N + R +Y D S DR+ R
Sbjct: 35 GSESGYRRYSRSRSRSRERSRDRNEYRRRNSRSRS-----RERSSHYRNDRSPDRDLYRD 89
Query: 91 EKPYIDSYHEMDAYCGHE-IDSFPEFDKFRDGYRNIENYRDHGFERPPRFGGXXXXXXXX 149
+ Y + Y + +D DK+ + + + RDH + G
Sbjct: 90 L--INEDYEDQGNYNSRQNLDQRHGEDKYDRRHADSQGRRDHD-SNYDKSGQDMDKDRDH 146
Query: 150 XXXXXXXXXXHQSREDSREGDCDFGRLXXXXXXXXXXXXXXXXXXHE-SRDRERDKRCLS 208
++ +D G R + ++R+RD+RC S
Sbjct: 147 RWKNYDRVSRERNHDDFDRGSERSSRSNDQRQFNNNGNSNSSSSYRDREKERDRDRRCSS 206
Query: 209 RE 210
E
Sbjct: 207 DE 208
Score = 49 (22.3 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 877 SGKRRFSEMPLPPATQKEQPQTTYRDRAAERRSLYGSSFSAGDDLPD 923
SG RR+S + ++ + + YR R + RS SS D PD
Sbjct: 38 SGYRRYSRSR-SRSRERSRDRNEYRRRNSRSRSRERSSHYRNDRSPD 83
Score = 40 (19.1 bits), Expect = 5.0e-19, Sum P(5) = 5.0e-19
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 620 GNTGLYYDGNSGIWYSYDQQTQQY 643
GN G YD Y YD+ + Y
Sbjct: 574 GNDGKKYDTPDVSKYQYDETSGYY 597
Score = 39 (18.8 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 900 YRDRAAERRSLYGSSFSAGD 919
Y A + S YG SFS G+
Sbjct: 13 YNRFALDMDSRYGHSFSGGN 32
>FB|FBgn0031318 [details] [associations]
symbol:CG4887 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
[GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR000467 InterPro:IPR000504 InterPro:IPR001876
InterPro:IPR007087 InterPro:IPR012677 InterPro:IPR015880
Pfam:PF01585 PROSITE:PS01358 PROSITE:PS50102 PROSITE:PS50157
PROSITE:PS50174 PROSITE:PS50199 SMART:SM00355 SMART:SM00360
SMART:SM00443 SMART:SM00547 GO:GO:0000166 GO:GO:0008270
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011 GO:GO:0000398
eggNOG:NOG290849 EMBL:AY070653 ProteinModelPortal:Q8SZM4 SMR:Q8SZM4
STRING:Q8SZM4 PaxDb:Q8SZM4 PRIDE:Q8SZM4 FlyBase:FBgn0031318
InParanoid:Q8SZM4 OrthoDB:EOG498SFS ArrayExpress:Q8SZM4 Bgee:Q8SZM4
Uniprot:Q8SZM4
Length = 1004
Score = 131 (51.2 bits), Expect = 6.8e-26, Sum P(5) = 6.8e-26
Identities = 31/100 (31%), Positives = 55/100 (55%)
Query: 600 FVWDEASGYYYDAASGFYYDGNTGLYYDGNSGIWYSYDQQTQQYI---PCTDQN------ 650
+ +DE SGYYYD+ +G YY+ ++ YY+ +G + +DQ+ Y+ P + Q
Sbjct: 630 YQYDETSGYYYDSTTGLYYNAHSQYYYNNETGAYLYWDQRRSTYVLATPASTQAALQEVL 689
Query: 651 -DNKTSGNG-SEPSKQVDGGSKNRKVVISAPAATVSSVEK 688
D + G S+ +K+ +GG+K+ KV ++ V +EK
Sbjct: 690 ADAEQKGEEESKKAKEKEGGNKHDKVKVAKKI--VKDMEK 727
Score = 131 (51.2 bits), Expect = 6.8e-26, Sum P(5) = 6.8e-26
Identities = 39/124 (31%), Positives = 62/124 (50%)
Query: 928 DSNRDFALKKGSVDSMPFPPGVGGRGFTAD--SVQSYEV--ITADKA--IDENNVGNRML 981
D ++ LK G D P PP F + ++QS + +A A I +NVG+R+L
Sbjct: 886 DRAKERRLKYGESD--PPPPNRSRERFEQEIKTLQSRQKQSTSATPAMPISSSNVGSRLL 943
Query: 982 RSMGWHEGLGLGKDGSGMIEPVQAQAMDSRAGLGSQQKKVDPSLEVQAGDSYKTLIHKKA 1041
+ MGW EG GLG+ G + ++A + GLG++ ++ P G+ YK+ I K
Sbjct: 944 QKMGWSEGQGLGRKNQGRTQIIEADGRSNYVGLGNKSGQMIP------GNDYKSYIKKMM 997
Query: 1042 LARF 1045
R+
Sbjct: 998 KQRY 1001
Score = 127 (49.8 bits), Expect = 6.8e-26, Sum P(5) = 6.8e-26
Identities = 43/142 (30%), Positives = 63/142 (44%)
Query: 396 DWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKGSD---TGPTHVLVV 452
DW C CG NF R CF C +R D +E S+ G +G D T T +++
Sbjct: 341 DWNCYKCGVCNFKFRFYCFVCKTSRED----SETTFSS----GSEGVDEVSTILTKKIML 392
Query: 453 RGLDEYADEEMLRYEFSKHAPIKDLR------LV-RDKFTHVSRGFAFLHFHSVEDASKA 505
R LD +EE + H +KDL L+ RD T SRG +LHF ++ D+
Sbjct: 393 RNLDALTNEEAVLTALQLH--LKDLSKTVSKVLISRDSLTQASRGICYLHFDTLVDSMNV 450
Query: 506 LEATNGTT--LEKNGQILRVAY 525
A L + +++ + Y
Sbjct: 451 HNALTALDPPLTLDDRVVAITY 472
Score = 100 (40.3 bits), Expect = 9.0e-23, Sum P(5) = 9.0e-23
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 604 EASGYYYDAASGFYYDGNTGLYYDGNSGIWYSYDQQTQQYI 644
+ + Y YD SG+YYD TGLYY+ +S Y Y+ +T Y+
Sbjct: 626 DVTQYQYDETSGYYYDSTTGLYYNAHSQ--YYYNNETGAYL 664
Score = 89 (36.4 bits), Expect = 2.2e-17, Sum P(4) = 2.2e-17
Identities = 24/89 (26%), Positives = 48/89 (53%)
Query: 439 KKGSDTGPTHVLVVRGLDEYADEEMLRYEFSK-HAPIKDLRLVRDKFTHVSRGFAFLHFH 497
K S T +++++ GL + + E K + +R++R + T SRG AF+ F+
Sbjct: 248 KYRSTTEALNIIIIFGLTKEMTRADIMSELIKVNMEPACIRIIRKQGTDSSRGIAFVEFN 307
Query: 498 SVEDASKALEATNGTTLEKNGQILRVAYA 526
+VE+A + ++ T G L+ N + + + Y+
Sbjct: 308 TVEEAKQWMDITQGV-LKLNDERVSMRYS 335
Score = 88 (36.0 bits), Expect = 6.8e-26, Sum P(5) = 6.8e-26
Identities = 24/81 (29%), Positives = 44/81 (54%)
Query: 289 IVVKGLSQKTTEEDLYQ--ILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
I++ GL+++ T D+ I P +R+I+++ + SRG AF++F +V A+ MD
Sbjct: 259 IIIFGLTKEMTRADIMSELIKVNMEPAC-IRIIRKQGTDSSRGIAFVEFNTVEEAKQWMD 317
Query: 347 RIGDDGLVVDGRKLFFEYSSK 367
I L ++ ++ YS K
Sbjct: 318 -ITQGVLKLNDERVSMRYSHK 337
Score = 54 (24.1 bits), Expect = 3.6e-18, Sum P(5) = 3.6e-18
Identities = 11/15 (73%), Positives = 11/15 (73%)
Query: 900 YRDRAAERRSLYGSS 914
YRDRA ERR YG S
Sbjct: 884 YRDRAKERRLKYGES 898
Score = 48 (22.0 bits), Expect = 1.4e-17, Sum P(5) = 1.4e-17
Identities = 19/81 (23%), Positives = 33/81 (40%)
Query: 620 GNTGLYYDGNSGIWYSYDQQTQQYIPCTD---QNDNKTSGNGSEPSKQVDGGSKNRKVVI 676
GN G Y Y YD+ + Y T N + +E + + V+
Sbjct: 616 GNDGKIYPTPDVTQYQYDETSGYYYDSTTGLYYNAHSQYYYNNETGAYLYWDQRRSTYVL 675
Query: 677 SAPAATVSSVEKPASLPDAVQ 697
+ PA+T +++++ L DA Q
Sbjct: 676 ATPASTQAALQEV--LADAEQ 694
Score = 47 (21.6 bits), Expect = 6.8e-26, Sum P(5) = 6.8e-26
Identities = 20/69 (28%), Positives = 28/69 (40%)
Query: 74 RRNYEEDYSLDRES--RRHEKPYIDSYHEMDAY----CGHEIDSFPEFDKFRDGYRNIEN 127
R N+E +S RRH +S E++ Y ++DS RD Y N
Sbjct: 106 RSNFENRQFRRHDSFDRRHRDRDGESDRELNDYEYEQRSRDLDSRDRSSTDRDWYHNRSR 165
Query: 128 YRDHGFERP 136
R+H RP
Sbjct: 166 SREHS--RP 172
Score = 44 (20.5 bits), Expect = 3.5e-17, Sum P(5) = 3.5e-17
Identities = 25/92 (27%), Positives = 38/92 (41%)
Query: 925 GSGDSNRDFALKKGSVDSMPFPPGVGGRGFTADSVQSYEV--ITADKAIDENNVGNRMLR 982
G+ DS D A + S G GG +D V +++ + +A V + L+
Sbjct: 800 GTSDSEEDNAASSQNTQSSAVVSG-GGGAEESDYVDFHKLTCLLCKRAFQSLEVLQKHLK 858
Query: 983 SMGWH-EGLG-LGKDGSGMIEPVQAQAMDSRA 1012
H E L L ++ S IE +A A RA
Sbjct: 859 MSTLHKENLAKLNQNTSSSIE--EALAYRDRA 888
Score = 43 (20.2 bits), Expect = 1.7e-25, Sum P(5) = 1.7e-25
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 75 RNYEEDYSLD-RESRRHEKPYIDSYH-EMDAYCGHEIDSFPEFDKFRD 120
RNY + + R+ RRH+ D H + D E++ + + RD
Sbjct: 101 RNYNSRSNFENRQFRRHDS--FDRRHRDRDGESDRELNDYEYEQRSRD 146
>WB|WBGene00020346 [details] [associations]
symbol:T08B2.5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR000467 InterPro:IPR000504 InterPro:IPR001876
InterPro:IPR012677 InterPro:IPR015880 Pfam:PF01585 PROSITE:PS01358
PROSITE:PS50102 PROSITE:PS50174 PROSITE:PS50199 SMART:SM00355
SMART:SM00443 SMART:SM00547 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0000003 GO:GO:0003676 GO:GO:0005622
GeneTree:ENSGT00510000046476 KO:K13094 EMBL:FO080899
UniGene:Cel.5094 GeneID:172312 KEGG:cel:CELE_T08B2.5 UCSC:T08B2.5c
CTD:172312 HOGENOM:HOG000019748 NextBio:874967 PIR:T28754
RefSeq:NP_491793.1 ProteinModelPortal:Q9BIC2 SMR:Q9BIC2
IntAct:Q9BIC2 MINT:MINT-1114302 STRING:Q9BIC2 PRIDE:Q9BIC2
EnsemblMetazoa:T08B2.5b WormBase:T08B2.5b InParanoid:Q9BIC2
OMA:GDDWICA ArrayExpress:Q9BIC2 Uniprot:Q9BIC2
Length = 925
Score = 156 (60.0 bits), Expect = 1.8e-19, Sum P(5) = 1.8e-19
Identities = 37/131 (28%), Positives = 66/131 (50%)
Query: 916 SAGDDLPDVGSGDS----NRDFALKK-G-SVDSMPFPPGVGGRGFTADSVQSYEVITADK 969
++ DLP + D R F + G + D M PPG ++++ + +
Sbjct: 792 ASAPDLPKIVYRDRAKERRRQFGIDSTGYAFDVMGGPPGPTSVRHE-ETIRKVSEEASKR 850
Query: 970 AIDENNVGNRMLRSMGWHEGLGLGKDGSGMIEPVQAQAMDSRAGLGSQQKKVDPSLEVQA 1029
+DE+N+GNR+L+SMGW EG G+GK G++ P++A+ AGLG+ K+ E
Sbjct: 851 PLDESNIGNRLLKSMGWKEGQGVGKHAQGIVNPIEAERFVQGAGLGAAGSKMRHGAEASH 910
Query: 1030 GDSYKTLIHKK 1040
+ + ++ +
Sbjct: 911 KEKTRQALYSR 921
Score = 104 (41.7 bits), Expect = 1.8e-19, Sum P(5) = 1.8e-19
Identities = 30/132 (22%), Positives = 61/132 (46%)
Query: 396 DWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKGSDTGPTHVLVVRGL 455
DW+C C NF +R +CF+C E D + E ++ + G DT L++RGL
Sbjct: 319 DWICAHCSMNNFVKRQTCFKC-EISKDQSMELEKLGAHMV--GMTPCDT-----LLIRGL 370
Query: 456 DEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLE 515
+ + ++ + + ++ K + S+ FA+L S ++A L T + +
Sbjct: 371 PDGINNSLIFDSLGALVCLSSISMI--KLSE-SKRFAYLQMKSADEAKMLLNLTYKSPIR 427
Query: 516 KNGQILRVAYAK 527
+ ++V++ +
Sbjct: 428 IKDKDVQVSWCR 439
Score = 91 (37.1 bits), Expect = 1.8e-19, Sum P(5) = 1.8e-19
Identities = 23/89 (25%), Positives = 36/89 (40%)
Query: 600 FVWDEASGYYYDAASGFYYDGNTGLYYDGNSGIWYSYDQQTQQYIPCTDQNDNKTSGNGS 659
F D GYY D + F YD TG Y++ + W ++D Y P ++
Sbjct: 560 FAHDPNLGYYVDPITKFCYDSATGYYFNNATSQWCNWDLTHHTYFPVETPAVINSADPEE 619
Query: 660 EPSKQVDGGSKNRKVVISAPAATVSSVEK 688
E K+ + G K + ++ A EK
Sbjct: 620 EKMKKNEEGPKTAQDLVKDMAKWAKRQEK 648
Score = 69 (29.3 bits), Expect = 2.7e-13, Sum P(4) = 2.7e-13
Identities = 24/86 (27%), Positives = 39/86 (45%)
Query: 446 PTHVLVVRGLDEYADEEMLRYEFSK--HAPIKDLRLVR--DKFTHVSRGFAFLHFHSVED 501
P++ L + + D + K + P +D+R + DK T R FAF+ F + E
Sbjct: 222 PSNKLAILNMPNDVDNTKITLSLGKCGYLP-QDVRTMTKFDKNTKQIRTFAFVEFSNRET 280
Query: 502 ASKALEATNGTTLEKNGQILRVAYAK 527
A + + G +G+ L V YAK
Sbjct: 281 AEQWMTDYEGWLTLDDGRTLAVEYAK 306
Score = 67 (28.6 bits), Expect = 1.8e-19, Sum P(5) = 1.8e-19
Identities = 25/93 (26%), Positives = 40/93 (43%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPL-RHVRVIK--ERNSGVSRGFAFIDFPSVGAA 341
PS + + + + L + G L + VR + ++N+ R FAF++F + A
Sbjct: 222 PSNKLAILNMPNDVDNTKITLSLGKCGYLPQDVRTMTKFDKNTKQIRTFAFVEFSNRETA 281
Query: 342 RAMMDRIGDDGLVVDGRKLFFEYSS-KPTGGSG 373
M + DGR L EY+ P GSG
Sbjct: 282 EQWMTDYEGWLTLDDGRTLAVEYAKGDPAAGSG 314
Score = 57 (25.1 bits), Expect = 2.4e-09, Sum P(5) = 2.4e-09
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 890 ATQKEQPQTTYRDRAAERRSLYG 912
A+ + P+ YRDRA ERR +G
Sbjct: 792 ASAPDLPKIVYRDRAKERRRQFG 814
Score = 39 (18.8 bits), Expect = 5.8e-08, Sum P(4) = 5.8e-08
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 426 PAEMNSSNPIPLGKKGSDTGP-THVLVVRGLDEYADEE 462
PA +NS++P K ++ GP T +V+ + ++A +
Sbjct: 609 PAVINSADPEEEKMKKNEEGPKTAQDLVKDMAKWAKRQ 646
Score = 38 (18.4 bits), Expect = 1.8e-19, Sum P(5) = 1.8e-19
Identities = 18/60 (30%), Positives = 23/60 (38%)
Query: 42 DERYSRDNIYPRN-AFQRENYPPPPVG---LWPQSRR---RNYEEDYSL--DRESRRHEK 92
D R R + R+ + R PP W S R R YS DR SRR ++
Sbjct: 145 DRRDDRSSRRRRDRSHSRSRSPPSSANGSSHWSSSNRHSRRRRSRSYSRERDRNSRRDDR 204
>ZFIN|ZDB-GENE-060929-836 [details] [associations]
symbol:aggf1 "angiogenic factor with G patch and
FHA domains 1" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0001525 "angiogenesis" evidence=IMP]
[GO:0051897 "positive regulation of protein kinase B signaling
cascade" evidence=IMP] [GO:0060841 "venous blood vessel
development" evidence=IMP] [GO:0001570 "vasculogenesis"
evidence=IMP] InterPro:IPR000253 InterPro:IPR000467
InterPro:IPR008984 Pfam:PF00498 Pfam:PF01585 PROSITE:PS50006
PROSITE:PS50174 SMART:SM00240 SMART:SM00443
ZFIN:ZDB-GENE-060929-836 GO:GO:0003676 Gene3D:2.60.200.20
SUPFAM:SSF49879 CTD:55109 eggNOG:NOG270400 HOGENOM:HOG000033843
HOVERGEN:HBG050465 OrthoDB:EOG4S1T6Q EMBL:BC124193 IPI:IPI00801129
RefSeq:NP_001073451.1 UniGene:Dr.75501 ProteinModelPortal:Q08CK9
PRIDE:Q08CK9 GeneID:559905 KEGG:dre:559905 InParanoid:Q08CK9
NextBio:20883193 ArrayExpress:Q08CK9 Bgee:Q08CK9 Uniprot:Q08CK9
Length = 774
Score = 156 (60.0 bits), Expect = 1.4e-16, Sum P(4) = 1.4e-16
Identities = 25/47 (53%), Positives = 38/47 (80%)
Query: 597 QSGFVWDEASGYYYDAASGFYYDGNTGLYYDGNSGIWYSYDQQTQQY 643
Q+ FV+DE+SG YYD ++GFYYD ++ LYYD N+G++Y YD ++ +Y
Sbjct: 215 QTNFVFDESSGMYYDHSTGFYYDSSSQLYYDANTGMYYYYDPESGKY 261
Score = 126 (49.4 bits), Expect = 1.4e-16, Sum P(4) = 1.4e-16
Identities = 30/78 (38%), Positives = 45/78 (57%)
Query: 971 IDENNVGNRMLRSMGWHEGLGLGKDGSGMIEPVQAQAMDSRAGLGSQQKKVDPSLEVQAG 1030
I + N G +ML MGW G GLGKDG+G+ +P+Q +++GLGS + S+E +
Sbjct: 674 IGDENKGRQMLEKMGWKRGEGLGKDGAGIKDPIQLHMRKAQSGLGSSGSAM--SVEDASL 731
Query: 1031 DSYKTLIH-KKALARFRE 1047
KT + ++A RF E
Sbjct: 732 TKSKTQRNWERARERFSE 749
Score = 56 (24.8 bits), Expect = 1.4e-16, Sum P(4) = 1.4e-16
Identities = 17/44 (38%), Positives = 20/44 (45%)
Query: 892 QKEQPQTTYRDRAAERRSLYGSSFS-AGDDLP---DVGSGDSNR 931
QK + Y+DRA RR GS DD P V GD N+
Sbjct: 636 QKPLKNSKYKDRAENRRQTVGSEGKFQRDDAPASVHVEIGDENK 679
Score = 45 (20.9 bits), Expect = 1.4e-16, Sum P(4) = 1.4e-16
Identities = 14/58 (24%), Positives = 26/58 (44%)
Query: 638 QQTQQYIPCTDQNDNKTSGNG-SEPSKQVDGGSKNRKVVISAPAATVSSVEKPASLPD 694
++T++ D+ G+ SEP + S S +++VSS++K PD
Sbjct: 393 KKTKKKRALRDRKSGSDEGSSESEPEEGEITESDGENHSCSVSSSSVSSIQKTLDSPD 450
Score = 40 (19.1 bits), Expect = 0.00018, Sum P(3) = 0.00018
Identities = 9/36 (25%), Positives = 19/36 (52%)
Query: 325 GVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKL 360
GVS+ A + F ++D+ +G V++G ++
Sbjct: 510 GVSKSHAEVYFDQDQQCYMLIDQGSQNGTVLNGNRI 545
Score = 38 (18.4 bits), Expect = 0.00029, Sum P(3) = 0.00029
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 632 IWYSYDQQTQQYIPCTDQNDNKTSGN 657
+++ DQQ I QN +GN
Sbjct: 518 VYFDQDQQCYMLIDQGSQNGTVLNGN 543
>UNIPROTKB|F1MKY1 [details] [associations]
symbol:AGGF1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0045766 "positive regulation of angiogenesis" evidence=IEA]
[GO:0043499 "eukaryotic cell surface binding" evidence=IEA]
[GO:0007155 "cell adhesion" evidence=IEA] [GO:0005576
"extracellular region" evidence=IEA] [GO:0001938 "positive
regulation of endothelial cell proliferation" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000253
InterPro:IPR000467 InterPro:IPR008984 Pfam:PF00498 Pfam:PF01585
PROSITE:PS50006 PROSITE:PS50174 SMART:SM00240 SMART:SM00443
GO:GO:0048471 GO:GO:0005576 GO:GO:0001938 GO:GO:0043499
GO:GO:0007155 GO:GO:0045766 GO:GO:0003676 Gene3D:2.60.200.20
SUPFAM:SSF49879 CTD:55109 OMA:NKNKKNW GeneTree:ENSGT00510000046476
EMBL:DAAA02027763 EMBL:DAAA02027764 IPI:IPI00721733
RefSeq:NP_001069000.2 UniGene:Bt.26680 ProteinModelPortal:F1MKY1
Ensembl:ENSBTAT00000049280 GeneID:511650 KEGG:bta:511650
NextBio:20870033 ArrayExpress:F1MKY1 Uniprot:F1MKY1
Length = 712
Score = 144 (55.7 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 35/100 (35%), Positives = 55/100 (55%)
Query: 597 QSGFVWDEASGYYYDAASGFYYDGNTGLYYDGNSGIWYSYDQQT--QQYIPCTDQNDNKT 654
Q+GF +DE +G Y+D ++GFYYD LYYD ++GI+Y D ++ Q+ D +T
Sbjct: 202 QTGFSYDENTGLYFDHSTGFYYDSENQLYYDPSTGIYYYCDVESGRYQFHSRVDLQPYQT 261
Query: 655 SGNGSEPSKQVDGGSKNRKVVISAPAATVSSVEKPASLPD 694
SG K++ K RK PA++ ++ EK + D
Sbjct: 262 SGTKQSKDKKL---KKKRK----DPASSTTNEEKNLNSED 294
Score = 140 (54.3 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 48/165 (29%), Positives = 73/165 (44%)
Query: 884 EMPLPPATQKEQPQTTYRDRAAERRSLYGSSFSAGDDLPDVGSGDSNRDFALKKGSVDSM 943
E+ + PA KE+ + R + R YG + +D + +D A K+
Sbjct: 540 ELFVGPALSKEEKELERRKELKKIRVKYGLQNTDYEDEKTL-KNPKYKDRAGKRREQ--- 595
Query: 944 PFPPGVGGRG-FTADSVQSYEVITADKAIDENNVGNRMLRSMGWHEGLGLGKDGSGMIEP 1002
+G G F D + + I ++N G +ML MGW +G GLGKDG GM P
Sbjct: 596 -----IGSEGTFQRDDAPA----SVHSEITDSNKGRKMLEKMGWKKGEGLGKDGGGMKTP 646
Query: 1003 VQAQAMDSRAGLGSQQKKVDPSLEVQAGDSYKTLIHKKALARFRE 1047
+Q Q + AGLG+ + +++ S K +KA RF E
Sbjct: 647 IQLQLRRTHAGLGTGKPSSIEDVQLLQNKSKKNW--EKARERFAE 689
Score = 41 (19.5 bits), Expect = 7.1e-05, Sum P(2) = 7.1e-05
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 325 GVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKL 360
GVS+ A I F + ++D+ +G VV+G+++
Sbjct: 450 GVSKFHAEIYFDHDLQSYVLVDQGSQNGTVVNGKQI 485
>ASPGD|ASPL0000078120 [details] [associations]
symbol:AN4850 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000467
InterPro:IPR000504 InterPro:IPR001876 InterPro:IPR007087
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00641 Pfam:PF01585
PROSITE:PS01358 PROSITE:PS50102 PROSITE:PS50157 PROSITE:PS50174
PROSITE:PS50199 SMART:SM00360 SMART:SM00443 SMART:SM00547
GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005622 EMBL:BN001303 OMA:IHAGVFV
EnsemblFungi:CADANIAT00005559 HOGENOM:HOG000194939 Uniprot:C8VA69
Length = 734
Score = 141 (54.7 bits), Expect = 2.5e-15, Sum P(6) = 2.5e-15
Identities = 45/169 (26%), Positives = 73/169 (43%)
Query: 313 LRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYSSKPTGGS 372
L VRVI++R + +SR F+ F S+ +RA M++ + + G + +K
Sbjct: 184 LEEVRVIRDRQTRISRQLGFLRFRSLNHSRAFMEQ-NFPTIYLCGPSAQDDRGTKVRIA- 241
Query: 373 GGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSS 432
Y +E + K+ DW C +C VN++ R CF+C R D P +
Sbjct: 242 ---YSRE-----KEDRAKARAEGDWTCKMCSIVNYSTRHKCFRCQAPRPDAGPTGPPGIA 293
Query: 433 NPIPLGKKGSDTGP----THVLVVRGLDEYADEEMLRYEFSK-HAPIKD 476
P +D P + L+ RGL+ EE+L +K + P D
Sbjct: 294 PPKVKNHGDNDAAPENQPSQFLLFRGLETSVTEELLAKGVAKLYRPNSD 342
Score = 99 (39.9 bits), Expect = 2.5e-15, Sum P(6) = 2.5e-15
Identities = 25/80 (31%), Positives = 38/80 (47%)
Query: 971 IDENNVGNRMLRSMGWHEGLGLGKDGSGMIEPVQAQAMDSRAGLGSQQKKVDPSLEVQAG 1030
+ + G +L MGW G GLG G+GM P+ + GLG+Q K+ + E A
Sbjct: 649 VQTTSKGASLLSKMGWSAGTGLGAQGTGMTAPITTEVYAQGVGLGAQGGKLGEASEEAAR 708
Query: 1031 DS---YKTLIHK-KALARFR 1046
++ Y + K + AR R
Sbjct: 709 NTRNRYDEFLEKTRQTARER 728
Score = 69 (29.3 bits), Expect = 7.3e-06, Sum P(5) = 7.3e-06
Identities = 18/62 (29%), Positives = 34/62 (54%)
Query: 474 IKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTL--------EKNGQILRVAY 525
++++R++RD+ T +SR FL F S+ S+A N T+ + G +R+AY
Sbjct: 184 LEEVRVIRDRQTRISRQLGFLRFRSLNH-SRAFMEQNFPTIYLCGPSAQDDRGTKVRIAY 242
Query: 526 AK 527
++
Sbjct: 243 SR 244
Score = 59 (25.8 bits), Expect = 2.5e-15, Sum P(6) = 2.5e-15
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 469 SKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKAL 506
++ I+ + LVRD+ T+ S + F F +++DA A+
Sbjct: 365 AREGSIRRVLLVRDRRTNESWRYGFAEFATIQDAQAAI 402
Score = 55 (24.4 bits), Expect = 2.5e-15, Sum P(6) = 2.5e-15
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 896 PQTT-YRDRAAERRSLYGSSFSA 917
PQ YRDRA ERR +G S +A
Sbjct: 611 PQPPEYRDRARERRQAFGRSKNA 633
Score = 53 (23.7 bits), Expect = 2.5e-15, Sum P(6) = 2.5e-15
Identities = 27/104 (25%), Positives = 39/104 (37%)
Query: 44 RYSRDN-IYPRNAFQRENYPPPPVGLWPQS----RRRNYEEDYSLDRESRRHEKPYIDSY 98
R RD +Y N+ R P P P+ RRR+Y +S R R+ D +
Sbjct: 23 RDDRDGRMYDDNSPSRSRSPGGPSHTPPRGPAADRRRDYSRGHSGSRS--RYRSRDRDEF 80
Query: 99 HEMDAYCGHEIDSFPEFDKFRDGYRNIENYRDHGFERP--PRFG 140
+ D+ R+GYR+ R + R PR G
Sbjct: 81 RRRSSRSPPRRPRHGYRDRDREGYRSRSRSRSYSRSRSRSPRRG 124
Score = 45 (20.9 bits), Expect = 2.6e-08, Sum P(5) = 2.6e-08
Identities = 16/54 (29%), Positives = 23/54 (42%)
Query: 874 ATGSGKRRFSEMPLPPATQKEQPQTTYRDRAAERRSLYGSSFSAGDDLPDVGSG 927
A G K ++ P PP ++ P + A S G +SAG L G+G
Sbjct: 626 AFGRSKNATAK-PAPPPEREPSPPVQTTSKGASLLSKMG--WSAGTGLGAQGTG 676
Score = 39 (18.8 bits), Expect = 2.5e-15, Sum P(6) = 2.5e-15
Identities = 12/51 (23%), Positives = 23/51 (45%)
Query: 730 KKLNNATMWKQWSHDNQQSASADDRPGPAGQASKTKFKSDSAATKENNTFS 780
KK+ + + WS N+ + + P G+ S + SD AA +++
Sbjct: 509 KKMAMPSHLQFWS--NRHAELHGIKKDPEGKGSADQNSSDEAAAPPRQSYA 557
Score = 37 (18.1 bits), Expect = 2.4e-13, Sum P(5) = 2.4e-13
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 889 PATQKEQPQTTYRDRAAERRSLYGSSFS 916
PA Q+E D+A +R++ SS S
Sbjct: 479 PAAQQEGKAKEASDKAKKRKADAASSAS 506
>UNIPROTKB|F1NWU4 [details] [associations]
symbol:AGGF1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0001938 "positive regulation of endothelial cell proliferation"
evidence=IEA] [GO:0005576 "extracellular region" evidence=IEA]
[GO:0007155 "cell adhesion" evidence=IEA] [GO:0043499 "eukaryotic
cell surface binding" evidence=IEA] [GO:0045766 "positive
regulation of angiogenesis" evidence=IEA] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IEA] InterPro:IPR000253
InterPro:IPR000467 InterPro:IPR008984 Pfam:PF00498 Pfam:PF01585
PROSITE:PS50006 PROSITE:PS50174 SMART:SM00240 SMART:SM00443
GO:GO:0048471 GO:GO:0005576 GO:GO:0001938 GO:GO:0043499
GO:GO:0007155 GO:GO:0045766 GO:GO:0003676 Gene3D:2.60.200.20
SUPFAM:SSF49879 OMA:NKNKKNW GeneTree:ENSGT00510000046476
EMBL:AADN02046231 EMBL:AADN02046232 EMBL:AADN02046233
EMBL:AADN02046234 IPI:IPI00823383 Ensembl:ENSGALT00000006867
Uniprot:F1NWU4
Length = 644
Score = 141 (54.7 bits), Expect = 2.6e-15, Sum P(2) = 2.6e-15
Identities = 49/164 (29%), Positives = 71/164 (43%)
Query: 884 EMPLPPATQKEQPQTTYRDRAAERRSLYGSSFSAGDDLPDVGSGDSNRDFALKKGSVDSM 943
E + PA KE+ + R + R YG + +D V +D A K+
Sbjct: 472 ESSVCPALSKEERELVRRKALKQIRVKYGLQNTEYEDNKAV-KNPKYKDRAGKRRETIGS 530
Query: 944 PFPPGVGGRGFTADSVQSYEVITADKAIDENNVGNRMLRSMGWHEGLGLGKDGSGMIEPV 1003
G RG T SV I ++N G++ML MGW +G GLGKDG GM +P+
Sbjct: 531 E---GTFQRGDTPASVHI--------EISDSNKGHKMLEKMGWKKGEGLGKDGGGMKDPI 579
Query: 1004 QAQAMDSRAGLGSQQKKVDPSLEVQAGDSYKTLIHKKALARFRE 1047
Q AGLG+ + +++ + K +KA RF E
Sbjct: 580 HLQLHKMHAGLGTSRPTSIEDIQIVPSKNKKNW--EKARERFAE 621
Score = 140 (54.3 bits), Expect = 2.6e-15, Sum P(2) = 2.6e-15
Identities = 29/77 (37%), Positives = 46/77 (59%)
Query: 597 QSGFVWDEASGYYYDAASGFYYDGNTGLYYDGNSGIWYSYDQQTQQYIPCTDQNDNKTSG 656
Q+GF++DE +G YYD ++GFYY+ LYYD +GI+Y D ++ +Y + +
Sbjct: 126 QTGFIYDENTGLYYDHSTGFYYNSENQLYYDPATGIYYYCDVESGRYQFHSRVDLQSYQA 185
Query: 657 NGSEPSKQVDGGSKNRK 673
+GS+ +K G K RK
Sbjct: 186 SGSQHAKDKKG-KKKRK 201
Score = 56 (24.8 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 23/112 (20%), Positives = 50/112 (44%)
Query: 590 QKDGLALQ---SGFVWDEASGYYYDAASGFYYDGNTGLYYDGNSGIWYSYDQQTQQYIPC 646
QKD +++ + W +A YYY+ YY+ Y + +++ + ++
Sbjct: 13 QKDTSSVEVQTEDYAWSQADYYYYEN----YYNHTDAQDYASELSVQHNHGTEGTEH-DF 67
Query: 647 TDQNDNKTSGNGSEPSKQV-DGGSKNRKVVISAPAATVSSVEKPASLPDAVQ 697
T+++ T+ S +V +GG + + S A S+ E SL ++++
Sbjct: 68 TEESQMDTNIPSRVNSTEVAEGGGEENLIQNSQEAEDASAPE--GSLAESLR 117
Score = 42 (19.8 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 879 KRRFSEMPLPPATQKEQPQTT 899
+ RF+E P +QK+ P++T
Sbjct: 616 RERFAENFQEPKSQKDTPKST 636
Score = 38 (18.4 bits), Expect = 8.6e-05, Sum P(2) = 8.6e-05
Identities = 11/57 (19%), Positives = 25/57 (43%)
Query: 731 KLNNATMWKQWSHDN--QQSASADDRPGPAGQ-ASKTKFKSDSAATKENNTFSSGAG 784
++N+ + + +N Q S A+D P G A + +++A ++ + G
Sbjct: 80 RVNSTEVAEGGGEENLIQNSQEAEDASAPEGSLAESLRAAAEAAVSQTGFIYDENTG 136
>ZFIN|ZDB-GENE-100922-245 [details] [associations]
symbol:si:ch73-205c16.2 "si:ch73-205c16.2"
species:7955 "Danio rerio" [GO:0005622 "intracellular"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001876
InterPro:IPR007087 InterPro:IPR012677 InterPro:IPR015880
Pfam:PF00641 PROSITE:PS01358 PROSITE:PS50102 PROSITE:PS50157
PROSITE:PS50199 SMART:SM00355 SMART:SM00360 SMART:SM00547
ZFIN:ZDB-GENE-100922-245 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GeneTree:ENSGT00510000046476 EMBL:CU927920 IPI:IPI00931142
Ensembl:ENSDART00000111456 Uniprot:F1R9N7
Length = 666
Score = 122 (48.0 bits), Expect = 7.2e-15, Sum P(4) = 7.2e-15
Identities = 24/75 (32%), Positives = 43/75 (57%)
Query: 598 SGFVWDEASGYYYDAASGFYYDGNTGLYYDGNSGIWYSYDQQTQQYIPCTDQNDNKTSGN 657
S + +DE+SGYYYD +G YYD N+ Y++ ++ + +D + Y+P Q+++ ++GN
Sbjct: 404 STYQYDESSGYYYDPFTGLYYDPNSQYYFNPHTQQYMYWDGEKHTYVPAPSQSED-SAGN 462
Query: 658 --GSEPSKQVDGGSK 670
P+ D K
Sbjct: 463 ELSGAPNSSKDKKDK 477
Score = 113 (44.8 bits), Expect = 6.7e-14, Sum P(4) = 6.7e-14
Identities = 26/53 (49%), Positives = 33/53 (62%)
Query: 593 GLALQSGFVWD-EASGYYYDAASGFYYDGNTGLYYDGNSGIWYSYDQQTQQYI 644
G AL+ D + S Y YD +SG+YYD TGLYYD NS Y ++ TQQY+
Sbjct: 390 GTALECQQYPDPDVSTYQYDESSGYYYDPFTGLYYDPNSQ--YYFNPHTQQYM 440
Score = 103 (41.3 bits), Expect = 7.2e-15, Sum P(4) = 7.2e-15
Identities = 30/101 (29%), Positives = 55/101 (54%)
Query: 431 SSNPIPLGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIK--DLRLVRDKFTHVS 488
SS+P P + +DT L++R L + E + + A + ++RL++DK T ++
Sbjct: 140 SSSPQP-SEAANDT-----LILRNLGPHTTLEAILSALAPFATLSPSNVRLIKDKQTQLN 193
Query: 489 RGFAFLHFHSVEDASKALEATNGTT--LEKNGQILRVAYAK 527
RGFAFL ++ +AS+ L+ L +G+++ V +AK
Sbjct: 194 RGFAFLQLTTIVEASQLLQILQALQPPLSIDGKLISVEFAK 234
Score = 94 (38.1 bits), Expect = 5.8e-09, Sum P(3) = 5.8e-09
Identities = 23/86 (26%), Positives = 48/86 (55%)
Query: 284 APSGTIVVKGLSQKTTEEDLYQILAEWGPLR--HVRVIKERNSGVSRGFAFIDFPSVGAA 341
A + T++++ L TT E + LA + L +VR+IK++ + ++RGFAF+ ++ A
Sbjct: 148 AANDTLILRNLGPHTTLEAILSALAPFATLSPSNVRLIKDKQTQLNRGFAFLQLTTIVEA 207
Query: 342 RAMMDRIG--DDGLVVDGRKLFFEYS 365
++ + L +DG+ + E++
Sbjct: 208 SQLLQILQALQPPLSIDGKLISVEFA 233
Score = 91 (37.1 bits), Expect = 7.2e-15, Sum P(4) = 7.2e-15
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 377 GQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDA 424
GQ +M +S+ K DW+C CG NF RR CF+C ++ +A
Sbjct: 55 GQRVSM--HYSDPKPRANEDWLCNKCGVQNFKRREKCFKCGVPKSAEA 100
Score = 89 (36.4 bits), Expect = 1.9e-08, Sum P(3) = 1.9e-08
Identities = 20/52 (38%), Positives = 36/52 (69%)
Query: 475 KDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYA 526
+++RL+R+K + SRGFAF+ F+ +++AS+ +E TN L GQ + + Y+
Sbjct: 13 REVRLMRNKSSGQSRGFAFVEFNHLQEASRWME-TNQKVLTILGQRVSMHYS 63
Score = 85 (35.0 bits), Expect = 2.9e-14, Sum P(4) = 2.9e-14
Identities = 20/56 (35%), Positives = 33/56 (58%)
Query: 314 RHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYSS-KP 368
R VR+++ ++SG SRGFAF++F + A M+ L + G+++ YS KP
Sbjct: 13 REVRLMRNKSSGQSRGFAFVEFNHLQEASRWMET-NQKVLTILGQRVSMHYSDPKP 67
Score = 57 (25.1 bits), Expect = 2.8e-08, Sum P(4) = 2.8e-08
Identities = 35/153 (22%), Positives = 57/153 (37%)
Query: 604 EASGYYYDAASGFYYDGNTGLYYDGNSGIWYSYDQQTQQYI-PCTDQN---DNKTSGNGS 659
E Y S + YD ++G YYD +G++Y D +Q Y P T Q D +
Sbjct: 394 ECQQYPDPDVSTYQYDESSGYYYDPFTGLYY--DPNSQYYFNPHTQQYMYWDGEKHTYVP 451
Query: 660 EPSKQVDGGSKNRKVVISAPAATVSSVEKPASLPDAVQXXXXXXXXXXXXXXXXXXXXXX 719
PS+ D + AP ++ +KP + A Q
Sbjct: 452 APSQSEDSAGNE---LSGAPNSSKDKKDKPKN-KSAQQIAKDMERWAKSLNRQKENGR-- 505
Query: 720 XXXXTIVANKKKLNNATMWKQWSHDNQQSASAD 752
++ N + + ++ S D ++SASAD
Sbjct: 506 ----SVNTNPRLMTHSR-----SDDRRESASAD 529
Score = 49 (22.3 bits), Expect = 7.2e-15, Sum P(4) = 7.2e-15
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 891 TQK-EQPQTTYRDRAAERR 908
TQ+ + + YRDRAAERR
Sbjct: 633 TQEGSETELKYRDRAAERR 651
>UNIPROTKB|F1S2H1 [details] [associations]
symbol:AGGF1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0045766 "positive regulation of angiogenesis" evidence=IEA]
[GO:0043499 "eukaryotic cell surface binding" evidence=IEA]
[GO:0007155 "cell adhesion" evidence=IEA] [GO:0005576
"extracellular region" evidence=IEA] [GO:0001938 "positive
regulation of endothelial cell proliferation" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000253
InterPro:IPR000467 InterPro:IPR008984 Pfam:PF00498 Pfam:PF01585
PROSITE:PS50006 PROSITE:PS50174 SMART:SM00240 SMART:SM00443
GO:GO:0048471 GO:GO:0005576 GO:GO:0001938 GO:GO:0043499
GO:GO:0007155 GO:GO:0045766 GO:GO:0003676 Gene3D:2.60.200.20
SUPFAM:SSF49879 CTD:55109 OMA:NKNKKNW GeneTree:ENSGT00510000046476
EMBL:CU467996 EMBL:CU928290 RefSeq:XP_003123763.1
Ensembl:ENSSSCT00000015395 GeneID:100520064 KEGG:ssc:100520064
Uniprot:F1S2H1
Length = 714
Score = 138 (53.6 bits), Expect = 5.4e-14, Sum P(3) = 5.4e-14
Identities = 34/100 (34%), Positives = 54/100 (54%)
Query: 597 QSGFVWDEASGYYYDAASGFYYDGNTGLYYDGNSGIWYSYDQQT--QQYIPCTDQNDNKT 654
Q+GF +DE +G Y+D ++GFYYD LYYD ++GI+Y D ++ Q+ D +T
Sbjct: 204 QTGFSYDENTGLYFDHSTGFYYDSENQLYYDPSTGIYYYCDVESGRYQFHSRVDLQPYQT 263
Query: 655 SGNGSEPSKQVDGGSKNRKVVISAPAATVSSVEKPASLPD 694
SG K++ K RK P ++ ++ EK + D
Sbjct: 264 SGTKQSKDKKL---KKKRK----DPDSSTTNEEKNLNSED 296
Score = 130 (50.8 bits), Expect = 5.4e-14, Sum P(3) = 5.4e-14
Identities = 30/77 (38%), Positives = 41/77 (53%)
Query: 971 IDENNVGNRMLRSMGWHEGLGLGKDGSGMIEPVQAQAMDSRAGLGSQQKKVDPSLEVQAG 1030
I ++N G +ML MGW +G GLGKDG GM P+Q Q + AGLG+ + +
Sbjct: 617 ITDSNKGRKMLEKMGWKKGEGLGKDGGGMKTPIQLQLRRTHAGLGTGTPSSIEDVHLLQS 676
Query: 1031 DSYKTLIHKKALARFRE 1047
+ K +KA RF E
Sbjct: 677 KNKKNW--EKARERFAE 691
Score = 47 (21.6 bits), Expect = 5.4e-14, Sum P(3) = 5.4e-14
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 892 QKEQPQTTYRDRAAERRSLYGSSFS-AGDDLP 922
+K Y+DRA +RR GS + DD P
Sbjct: 579 EKALKNPKYKDRAGKRREQVGSEGTFQRDDAP 610
Score = 41 (19.5 bits), Expect = 0.00032, Sum P(3) = 0.00032
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 325 GVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKL 360
GVS+ A I F + ++D+ +G VV+G+++
Sbjct: 452 GVSKFHAEIYFDHDLQSYVLVDQGSQNGTVVNGKQI 487
Score = 37 (18.1 bits), Expect = 0.00079, Sum P(3) = 0.00079
Identities = 16/57 (28%), Positives = 24/57 (42%)
Query: 454 GLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATN 510
G+ Y D E RY+F H+ + DL+ + T S+ D+S E N
Sbjct: 238 GIYYYCDVESGRYQF--HSRV-DLQPYQTSGTKQSKDKKLKKKRKDPDSSTTNEEKN 291
>UNIPROTKB|E2RLI2 [details] [associations]
symbol:AGGF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0045766 "positive regulation of angiogenesis"
evidence=IEA] [GO:0043499 "eukaryotic cell surface binding"
evidence=IEA] [GO:0007155 "cell adhesion" evidence=IEA] [GO:0005576
"extracellular region" evidence=IEA] [GO:0001938 "positive
regulation of endothelial cell proliferation" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000253
InterPro:IPR000467 InterPro:IPR008984 Pfam:PF00498 Pfam:PF01585
PROSITE:PS50006 PROSITE:PS50174 SMART:SM00240 SMART:SM00443
GO:GO:0048471 GO:GO:0005576 GO:GO:0001938 GO:GO:0043499
GO:GO:0007155 GO:GO:0045766 GO:GO:0003676 Gene3D:2.60.200.20
SUPFAM:SSF49879 CTD:55109 OMA:NKNKKNW GeneTree:ENSGT00510000046476
EMBL:AAEX03002138 RefSeq:XP_536317.2 ProteinModelPortal:E2RLI2
Ensembl:ENSCAFT00000014724 GeneID:479176 KEGG:cfa:479176
Uniprot:E2RLI2
Length = 711
Score = 135 (52.6 bits), Expect = 5.5e-14, Sum P(3) = 5.5e-14
Identities = 33/100 (33%), Positives = 54/100 (54%)
Query: 597 QSGFVWDEASGYYYDAASGFYYDGNTGLYYDGNSGIWYSYDQQT--QQYIPCTDQNDNKT 654
Q+GF +DE +G Y+D ++GFYYD LYYD ++GI+Y D ++ Q+ D +T
Sbjct: 201 QTGFSYDENTGLYFDHSTGFYYDSENQLYYDPSTGIYYYCDVESGRYQFHSRVDLQPYQT 260
Query: 655 SGNGSEPSKQVDGGSKNRKVVISAPAATVSSVEKPASLPD 694
G K++ K RK P +++++ EK + D
Sbjct: 261 CGTKQSKDKKL---KKKRK----DPDSSLANEEKDLNSED 293
Score = 133 (51.9 bits), Expect = 5.5e-14, Sum P(3) = 5.5e-14
Identities = 31/77 (40%), Positives = 42/77 (54%)
Query: 971 IDENNVGNRMLRSMGWHEGLGLGKDGSGMIEPVQAQAMDSRAGLGSQQKKVDPSLEVQAG 1030
I ++N G +ML MGW +G GLGKDG GM P+Q Q + AGLG+ + + +
Sbjct: 614 ITDSNKGRKMLEKMGWKKGEGLGKDGGGMKIPIQLQLRRTHAGLGTGKPSSIEDVHLLQN 673
Query: 1031 DSYKTLIHKKALARFRE 1047
S K +KA RF E
Sbjct: 674 KSKKNW--EKARERFAE 688
Score = 47 (21.6 bits), Expect = 5.5e-14, Sum P(3) = 5.5e-14
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 892 QKEQPQTTYRDRAAERRSLYGSSFS-AGDDLP 922
+K Y+DRA +RR GS + DD P
Sbjct: 576 EKALKNPKYKDRAGKRREQIGSEGTFQRDDAP 607
Score = 41 (19.5 bits), Expect = 0.00015, Sum P(3) = 0.00015
Identities = 10/36 (27%), Positives = 21/36 (58%)
Query: 325 GVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKL 360
GVS+ A I F + ++D+ +G +V+G+++
Sbjct: 449 GVSKFHAEIYFDHELQSYVLVDQGSQNGTIVNGKQI 484
Score = 37 (18.1 bits), Expect = 0.00038, Sum P(3) = 0.00038
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 636 YDQQTQQYIPCTDQNDNKTSGNGSE 660
+D + Q Y+ + N T NG +
Sbjct: 459 FDHELQSYVLVDQGSQNGTIVNGKQ 483
>MGI|MGI:1913799 [details] [associations]
symbol:Aggf1 "angiogenic factor with G patch and FHA domains
1" species:10090 "Mus musculus" [GO:0001525 "angiogenesis"
evidence=IEA] [GO:0001938 "positive regulation of endothelial cell
proliferation" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005576 "extracellular region" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0007155 "cell adhesion"
evidence=ISO] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0043499 "eukaryotic cell surface binding" evidence=ISO]
[GO:0045766 "positive regulation of angiogenesis" evidence=ISO]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISO]
InterPro:IPR000253 InterPro:IPR000467 InterPro:IPR008984
Pfam:PF00498 Pfam:PF01585 PROSITE:PS50006 PROSITE:PS50174
SMART:SM00240 SMART:SM00443 MGI:MGI:1913799 GO:GO:0048471
GO:GO:0005576 GO:GO:0030154 GO:GO:0001938 GO:GO:0043499
GO:GO:0007155 GO:GO:0001525 GO:GO:0045766 GO:GO:0003676
Gene3D:2.60.200.20 SUPFAM:SSF49879 CTD:55109 eggNOG:NOG270400
HOGENOM:HOG000033843 HOVERGEN:HBG050465 OMA:NKNKKNW
OrthoDB:EOG4S1T6Q ChiTaRS:AGGF1 EMBL:AY500995 EMBL:AK008168
EMBL:AK008399 EMBL:AK009533 EMBL:AK017248 EMBL:BC027286
EMBL:BC052410 IPI:IPI00187239 RefSeq:NP_079906.2 UniGene:Mm.36785
ProteinModelPortal:Q7TN31 SMR:Q7TN31 STRING:Q7TN31
PhosphoSite:Q7TN31 PRIDE:Q7TN31 Ensembl:ENSMUST00000022189
GeneID:66549 KEGG:mmu:66549 UCSC:uc007rmi.1
GeneTree:ENSGT00510000046476 InParanoid:Q7TN31 NextBio:321992
Bgee:Q7TN31 CleanEx:MM_AGGF1 Genevestigator:Q7TN31
GermOnline:ENSMUSG00000021681 Uniprot:Q7TN31
Length = 711
Score = 136 (52.9 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 22/47 (46%), Positives = 35/47 (74%)
Query: 597 QSGFVWDEASGYYYDAASGFYYDGNTGLYYDGNSGIWYSYDQQTQQY 643
Q+GF +DE++G Y+D ++GFYYD LYYD ++GI+Y D ++ +Y
Sbjct: 204 QTGFTYDESTGLYFDHSTGFYYDSENQLYYDPSTGIYYYCDVESGRY 250
Score = 130 (50.8 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 37/101 (36%), Positives = 48/101 (47%)
Query: 949 VGGRG-FTADSVQSYEVITADKAIDENNVGNRMLRSMGWHEGLGLGKDGSGMIEPVQAQA 1007
VG G F D + + I ++N G +ML MGW G GLGKDG GM P+Q Q
Sbjct: 595 VGSEGTFQRDDAPA----SVHSEITDSNKGRKMLEKMGWKRGEGLGKDGGGMKTPIQLQL 650
Query: 1008 MDSRAGLGSQQKKVDPSLEVQAGDSYKTLIH-KKALARFRE 1047
+ AGLG+ + + + S K H KA RF E
Sbjct: 651 RRTHAGLGTGKLSSIDDVHLIQNKSKK---HWDKARERFAE 688
Score = 49 (22.3 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 17/44 (38%), Positives = 22/44 (50%)
Query: 892 QKEQPQTTYRDRAAERRSLYGSSFS-AGDDLP-DVGSG--DSNR 931
+K Y+DRA +RR GS + DD P V S DSN+
Sbjct: 576 EKALKNPKYKDRAGKRREQVGSEGTFQRDDAPASVHSEITDSNK 619
>UNIPROTKB|F1MAK0 [details] [associations]
symbol:F1MAK0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000253 InterPro:IPR000467
InterPro:IPR008984 Pfam:PF00498 Pfam:PF01585 PROSITE:PS50006
PROSITE:PS50174 SMART:SM00240 SMART:SM00443 GO:GO:0048471
GO:GO:0005576 GO:GO:0001938 GO:GO:0043499 GO:GO:0007155
GO:GO:0045766 GO:GO:0003676 Gene3D:2.60.200.20 SUPFAM:SSF49879
GeneTree:ENSGT00510000046476 IPI:IPI00763234
Ensembl:ENSRNOT00000051653 Uniprot:F1MAK0
Length = 706
Score = 132 (51.5 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
Identities = 21/47 (44%), Positives = 34/47 (72%)
Query: 597 QSGFVWDEASGYYYDAASGFYYDGNTGLYYDGNSGIWYSYDQQTQQY 643
Q+ F +DE++G Y+D ++GFYYD LYYD ++GI+Y D ++ +Y
Sbjct: 197 QTSFTYDESTGLYFDHSTGFYYDSENQLYYDASTGIYYYCDVESGRY 243
Score = 132 (51.5 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
Identities = 36/100 (36%), Positives = 47/100 (47%)
Query: 949 VGGRG-FTADSVQSYEVITADKAIDENNVGNRMLRSMGWHEGLGLGKDGSGMIEPVQAQA 1007
VG G F D + + I ++N G +ML MGW +G GLGKDG GM P+Q Q
Sbjct: 590 VGSEGTFQRDDAPA----SVHSEITDSNKGRKMLEKMGWKKGEGLGKDGGGMKTPIQLQL 645
Query: 1008 MDSRAGLGSQQKKVDPSLEVQAGDSYKTLIHKKALARFRE 1047
+ AGLG+ + + S K KA RF E
Sbjct: 646 RRTHAGLGTGKPSSIDDVHFLQNKSKKNW--DKARERFAE 683
Score = 49 (22.3 bits), Expect = 7.5e-05, Sum P(2) = 7.5e-05
Identities = 17/44 (38%), Positives = 22/44 (50%)
Query: 892 QKEQPQTTYRDRAAERRSLYGSSFS-AGDDLP-DVGSG--DSNR 931
+K Y+DRA +RR GS + DD P V S DSN+
Sbjct: 571 EKALKNPKYKDRAGKRREQVGSEGTFQRDDAPASVHSEITDSNK 614
>POMBASE|SPAC57A7.13 [details] [associations]
symbol:SPAC57A7.13 "RNA-binding protein, involved in
splicing (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003723 "RNA binding" evidence=ISM] [GO:0005634 "nucleus"
evidence=IDA] [GO:0008270 "zinc ion binding" evidence=ISM]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=NAS]
InterPro:IPR000467 InterPro:IPR000504 InterPro:IPR001876
InterPro:IPR012677 InterPro:IPR015880 Pfam:PF01585 PROSITE:PS00028
PROSITE:PS01358 PROSITE:PS50102 PROSITE:PS50157 PROSITE:PS50174
PROSITE:PS50199 SMART:SM00355 SMART:SM00360 SMART:SM00443
PomBase:SPAC57A7.13 GO:GO:0005634 EMBL:CU329670 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0045292 PIR:T38941 RefSeq:NP_593368.1
ProteinModelPortal:P87143 EnsemblFungi:SPAC57A7.13.1 GeneID:2542526
KEGG:spo:SPAC57A7.13 eggNOG:NOG308443 OMA:IHAGVFV OrthoDB:EOG4HB1TR
NextBio:20803579 Uniprot:P87143
Length = 565
Score = 131 (51.2 bits), Expect = 2.4e-13, Sum P(3) = 2.4e-13
Identities = 35/111 (31%), Positives = 53/111 (47%)
Query: 397 WMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKGSDTGPTHVLVVRGLD 456
W C C +N++ R SCF+C R + A A N G P+ L++R LD
Sbjct: 159 WCCQNCDILNYSYRESCFKCRVPR-NQASIAIGNHKISKRNGDMDVSDVPSVYLILRNLD 217
Query: 457 EYADEEMLRYEFSK-HAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKAL 506
EE L SK ++ + ++R KF G+A L F V++++KAL
Sbjct: 218 RSLSEETLWKGLSKLEIDVQRVFMIRYKFNDAFCGYAILEFKDVDESAKAL 268
Score = 96 (38.9 bits), Expect = 2.4e-13, Sum P(3) = 2.4e-13
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 974 NNVGNRMLRSMGWHEGLGLGKDGSGMIEPVQAQAMDSRAGLGSQQKKV 1021
+NV +ML SMGW++G GLG + +G+ E +Q GLG++ K+
Sbjct: 491 SNVSMKMLNSMGWNKGSGLGTNENGIKEAIQPTMYLPGVGLGNKGSKI 538
Score = 90 (36.7 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 25/84 (29%), Positives = 47/84 (55%)
Query: 446 PTHVLVVRGLD-EYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASK 504
P ++++GL E +E + ++ A + + L+R+K T SR FAF F S++D+
Sbjct: 69 PNQEIILQGLTPEILEEHIELALYATGAKVSTVTLIREKETQKSRCFAFAKFVSLQDSKD 128
Query: 505 ALEATNGTTLEKNGQILRVAYAKS 528
+EA N TL +G + V ++++
Sbjct: 129 WMEA-NFPTLVIDGIDVSVRFSRA 151
Score = 78 (32.5 bits), Expect = 2.4e-13, Sum P(3) = 2.4e-13
Identities = 26/87 (29%), Positives = 45/87 (51%)
Query: 280 HYAVAPSGTIVVKGLSQKTTEEDLYQILAEWGP-LRHVRVIKERNSGVSRGFAFIDFPSV 338
H V P+ I+++GL+ + EE + L G + V +I+E+ + SR FAF F S+
Sbjct: 65 HIGV-PNQEIILQGLTPEILEEHIELALYATGAKVSTVTLIREKETQKSRCFAFAKFVSL 123
Query: 339 GAARAMMDRIGDDGLVVDGRKLFFEYS 365
++ M+ LV+DG + +S
Sbjct: 124 QDSKDWMEA-NFPTLVIDGIDVSVRFS 149
Score = 45 (20.9 bits), Expect = 3.4e-08, Sum P(3) = 3.4e-08
Identities = 20/88 (22%), Positives = 36/88 (40%)
Query: 893 KEQPQTTYRDRAAERRSLYGSSFSAGDDLPDVGSGDSNRDFA-LKKGSVDSMPFPPGVGG 951
++ YRDRA ERR + +S + G S + + ++SM + G G
Sbjct: 450 RQTESVDYRDRATERRIVPAASSDTIVEAKKSSQGSSFHSTSNVSMKMLNSMGWNKG-SG 508
Query: 952 RGFTADSVQSYEVITADKAIDENNVGNR 979
G + ++ E I + +GN+
Sbjct: 509 LGTNENGIK--EAIQPTMYLPGVGLGNK 534
>UNIPROTKB|Q8N302 [details] [associations]
symbol:AGGF1 "Angiogenic factor with G patch and FHA
domains 1" species:9606 "Homo sapiens" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0001525 "angiogenesis" evidence=IEA]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IDA]
[GO:0043499 "eukaryotic cell surface binding" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005576 "extracellular
region" evidence=IDA] [GO:0045766 "positive regulation of
angiogenesis" evidence=IDA] [GO:0001938 "positive regulation of
endothelial cell proliferation" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0007155 "cell adhesion" evidence=IDA] [GO:0001570
"vasculogenesis" evidence=TAS] InterPro:IPR000253
InterPro:IPR000467 InterPro:IPR008984 Pfam:PF00498 Pfam:PF01585
PROSITE:PS50006 PROSITE:PS50174 SMART:SM00240 SMART:SM00443
GO:GO:0048471 GO:GO:0005576 GO:GO:0001938 GO:GO:0043499
GO:GO:0007155 GO:GO:0001525 GO:GO:0045766 GO:GO:0003676
Gene3D:2.60.200.20 SUPFAM:SSF49879 GO:GO:0006396 GO:GO:0001570
EMBL:AY500994 EMBL:AY500996 EMBL:U84971 EMBL:BC002828 EMBL:BC029382
EMBL:AK001145 IPI:IPI00018027 IPI:IPI00106911 IPI:IPI00164579
RefSeq:NP_060516.2 UniGene:Hs.634849 ProteinModelPortal:Q8N302
SMR:Q8N302 IntAct:Q8N302 MINT:MINT-1475154 STRING:Q8N302
PhosphoSite:Q8N302 DMDM:45477317 PaxDb:Q8N302 PRIDE:Q8N302
DNASU:55109 Ensembl:ENST00000312916 Ensembl:ENST00000506806
GeneID:55109 KEGG:hsa:55109 UCSC:uc003kes.3 UCSC:uc003ket.3
CTD:55109 GeneCards:GC05P076362 HGNC:HGNC:24684 HPA:HPA043500
MIM:149000 MIM:608464 neXtProt:NX_Q8N302 Orphanet:90308
PharmGKB:PA134951291 eggNOG:NOG270400 HOGENOM:HOG000033843
HOVERGEN:HBG050465 InParanoid:Q8N302 OMA:NKNKKNW OrthoDB:EOG4S1T6Q
PhylomeDB:Q8N302 ChiTaRS:AGGF1 GenomeRNAi:55109 NextBio:58725
PMAP-CutDB:Q8N302 ArrayExpress:Q8N302 Bgee:Q8N302 CleanEx:HS_AGGF1
Genevestigator:Q8N302 GermOnline:ENSG00000164252 Uniprot:Q8N302
Length = 714
Score = 131 (51.2 bits), Expect = 3.6e-13, Sum P(2) = 3.6e-13
Identities = 22/47 (46%), Positives = 34/47 (72%)
Query: 597 QSGFVWDEASGYYYDAASGFYYDGNTGLYYDGNSGIWYSYDQQTQQY 643
Q+GF +DE +G Y+D ++GFYYD LYYD ++GI+Y D ++ +Y
Sbjct: 204 QTGFSYDENTGLYFDHSTGFYYDSENQLYYDPSTGIYYYCDVESGRY 250
Score = 131 (51.2 bits), Expect = 3.6e-13, Sum P(2) = 3.6e-13
Identities = 35/100 (35%), Positives = 48/100 (48%)
Query: 949 VGGRG-FTADSVQSYEVITADKAIDENNVGNRMLRSMGWHEGLGLGKDGSGMIEPVQAQA 1007
VG G F D + + I ++N G +ML MGW +G GLGKDG GM P+Q Q
Sbjct: 598 VGSEGTFQRDDAPA----SVHSEITDSNKGRKMLEKMGWKKGEGLGKDGGGMKTPIQLQL 653
Query: 1008 MDSRAGLGSQQKKVDPSLEVQAGDSYKTLIHKKALARFRE 1047
+ AGLG+ + + + + K KA RF E
Sbjct: 654 RRTHAGLGTGKPSSFEDVHLLQNKNKKNW--DKARERFTE 691
Score = 49 (22.3 bits), Expect = 9.8e-05, Sum P(2) = 9.8e-05
Identities = 17/44 (38%), Positives = 22/44 (50%)
Query: 892 QKEQPQTTYRDRAAERRSLYGSSFS-AGDDLP-DVGSG--DSNR 931
+K Y+DRA +RR GS + DD P V S DSN+
Sbjct: 579 EKTLKNPKYKDRAGKRREQVGSEGTFQRDDAPASVHSEITDSNK 622
Score = 40 (19.1 bits), Expect = 0.00081, Sum P(2) = 0.00081
Identities = 10/36 (27%), Positives = 21/36 (58%)
Query: 325 GVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKL 360
GVS+ A I F + ++D+ +G +V+G+++
Sbjct: 452 GVSKFHAEIYFDHDLQSYVLVDQGSQNGTIVNGKQI 487
>UNIPROTKB|Q5R951 [details] [associations]
symbol:DKFZp459G1317 "Putative uncharacterized protein
DKFZp459G1317" species:9601 "Pongo abelii" [GO:0001938 "positive
regulation of endothelial cell proliferation" evidence=ISS]
[GO:0005576 "extracellular region" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007155 "cell adhesion" evidence=ISS]
[GO:0043499 "eukaryotic cell surface binding" evidence=ISS]
[GO:0045766 "positive regulation of angiogenesis" evidence=ISS]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISS]
InterPro:IPR000253 InterPro:IPR000467 InterPro:IPR008984
Pfam:PF00498 Pfam:PF01585 PROSITE:PS50006 PROSITE:PS50174
SMART:SM00240 SMART:SM00443 GO:GO:0048471 GO:GO:0005576
GO:GO:0001938 GO:GO:0043499 GO:GO:0007155 GO:GO:0045766
GO:GO:0003676 Gene3D:2.60.200.20 SUPFAM:SSF49879
HOGENOM:HOG000033843 HOVERGEN:HBG050465 EMBL:CR859544
UniGene:Pab.11802 ProteinModelPortal:Q5R951 InParanoid:Q5R951
Uniprot:Q5R951
Length = 609
Score = 133 (51.9 bits), Expect = 6.4e-13, Sum P(3) = 6.4e-13
Identities = 33/100 (33%), Positives = 53/100 (53%)
Query: 597 QSGFVWDEASGYYYDAASGFYYDGNTGLYYDGNSGIWYSYDQQT--QQYIPCTDQNDNKT 654
Q+GF +DE +G Y+D ++GFYYD LYYD ++GI+Y D ++ Q+ D +T
Sbjct: 99 QTGFSYDENTGLYFDHSTGFYYDSENQLYYDPSTGIYYYCDVESGRYQFHSRVDLQPYQT 158
Query: 655 SGNGSEPSKQVDGGSKNRKVVISAPAATVSSVEKPASLPD 694
S K++ K RK P ++ ++ EK + D
Sbjct: 159 SSTKQSKDKKL---KKKRK----DPDSSATNEEKDLNSED 191
Score = 132 (51.5 bits), Expect = 6.4e-13, Sum P(3) = 6.4e-13
Identities = 35/100 (35%), Positives = 48/100 (48%)
Query: 949 VGGRG-FTADSVQSYEVITADKAIDENNVGNRMLRSMGWHEGLGLGKDGSGMIEPVQAQA 1007
VG G F D + + I ++N G +ML MGW +G GLGKDG GM P+Q Q
Sbjct: 493 VGSEGTFQRDDAPA----SVHSEITDSNKGRKMLEKMGWKKGEGLGKDGGGMKTPIQLQL 548
Query: 1008 MDSRAGLGSQQKKVDPSLEVQAGDSYKTLIHKKALARFRE 1047
+ AGLG+ + + + + K KA RF E
Sbjct: 549 RRTHAGLGTGKPSSIEDIHLLQNKNKKNW--DKARERFTE 586
Score = 49 (22.3 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 17/44 (38%), Positives = 22/44 (50%)
Query: 892 QKEQPQTTYRDRAAERRSLYGSSFS-AGDDLP-DVGSG--DSNR 931
+K Y+DRA +RR GS + DD P V S DSN+
Sbjct: 474 EKTLKNPKYKDRAGKRREQVGSEGTFQRDDAPASVHSEITDSNK 517
Score = 40 (19.1 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 10/36 (27%), Positives = 21/36 (58%)
Query: 325 GVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKL 360
GVS+ A I F + ++D+ +G +V+G+++
Sbjct: 347 GVSKFHAEIYFDRDLQSYVLVDQGSQNGTIVNGKQI 382
Score = 37 (18.1 bits), Expect = 6.4e-13, Sum P(3) = 6.4e-13
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 495 HFHSVEDASKALEATNGTTLEKNG--QILRVAYAKSILGPG 533
HF S S + AT T+LE + + LR A ++ G
Sbjct: 61 HFASNSQESASALATEDTSLEGSSLAESLRAAAEAAVSQTG 101
Score = 37 (18.1 bits), Expect = 0.00084, Sum P(2) = 0.00084
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 454 GLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSR 489
G+ Y D E RY+F H+ + DL+ + T S+
Sbjct: 133 GIYYYCDVESGRYQF--HSRV-DLQPYQTSSTKQSK 165
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 138 (53.6 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 34/95 (35%), Positives = 55/95 (57%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
G + V GL+ +TTEE L Q+ +++G + V V+K+R S SRGF F+ F + A+ M
Sbjct: 6 GKLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAM- 64
Query: 347 RIGDDGLVVDGRKLFFEYSSKPTGGS-GGHYGQES 380
+ +G VDGR++ + + K + GG+ G S
Sbjct: 65 -MAMNGKSVDGRQIRVDQAGKSSNDRRGGYRGGSS 98
Score = 119 (46.9 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 29/77 (37%), Positives = 46/77 (59%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
L V GL+ EE L FSK+ + ++ +V+D+ + SRGF F+ F + EDA A+ A
Sbjct: 8 LFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAM 67
Query: 510 NGTTLEKNGQILRVAYA 526
NG +++ G+ +RV A
Sbjct: 68 NGKSVD--GRQIRVDQA 82
Score = 58 (25.5 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 602 WDEASGYYYDAASGFYYDGNTGLYYDGNSGIWY-SYDQQTQQ 642
++ SG Y + S YY + G Y D + G + SYD T Q
Sbjct: 124 FENRSGGYQSSGSRDYYGRSHGSYGDRSGGSYRDSYDSYTTQ 165
>DICTYBASE|DDB_G0290307 [details] [associations]
symbol:DDB_G0290307 "ELAVL1-like protein"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0290307 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000162 eggNOG:NOG256997 RefSeq:XP_635793.1
ProteinModelPortal:Q54G90 EnsemblProtists:DDB0233651 GeneID:8627598
KEGG:ddi:DDB_G0290307 InParanoid:Q54G90 OMA:SATNQCK Uniprot:Q54G90
Length = 459
Score = 137 (53.3 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 36/114 (31%), Positives = 59/114 (51%)
Query: 414 FQCNEARTDDAPPAEMNSSNPIPLGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAP 473
F N + P + + SS+ P G K T PT+ L V L AD+ +L FS
Sbjct: 349 FYQNMPTMNSLPNSMIGSSSQPPPGGKNPGTDPTN-LYVYNLPSDADDSLLYRLFSPCGA 407
Query: 474 IKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYAK 527
I +++VRD+ T V RG+ F+ S+ D+ A+ + NG ++ G+ + V++ K
Sbjct: 408 IASVKIVRDQTTQVCRGYGFVRMVSLADSYSAINSING--VQVGGKTISVSFKK 459
Score = 102 (41.0 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 25/90 (27%), Positives = 47/90 (52%)
Query: 284 APSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARA 343
A SG + + L T + L I + +G + RV+ + N+G+SRGF F+ F V +A+
Sbjct: 96 ANSGNLFISFLPATYTSDTLRSIFSAFGEIDSCRVMVDLNTGLSRGFGFVKFKDVASAQY 155
Query: 344 MMDRIGDDGLVVDGRKLFFEYS-SKPTGGS 372
++ + +G V+ + L ++ S P +
Sbjct: 156 AINSM--NGAKVENKTLLVRFANSDPNSNN 183
Score = 79 (32.9 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 21/75 (28%), Positives = 38/75 (50%)
Query: 452 VRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNG 511
+RGL D+ L FS + + + +L+ D T+ SRG + + + A A+++ NG
Sbjct: 223 IRGLPIEFDKNQLSELFSAYGEVVESKLLIDITTNASRGQGLVRYIDTQSAINAVKSLNG 282
Query: 512 TTLEKNGQILRVAYA 526
L+ + L V +A
Sbjct: 283 FILQDPEKPLIVRFA 297
Score = 44 (20.5 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 12/63 (19%), Positives = 32/63 (50%)
Query: 286 SGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRG---FAFIDFPS-VGAA 341
S + ++GL + + L ++ + +G + +++ + + SRG +ID S + A
Sbjct: 218 SNNVFIRGLPIEFDKNQLSELFSAYGEVVESKLLIDITTNASRGQGLVRYIDTQSAINAV 277
Query: 342 RAM 344
+++
Sbjct: 278 KSL 280
>FB|FBgn0034002 [details] [associations]
symbol:CG8079 species:7227 "Drosophila melanogaster"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:0071011 "precatalytic
spliceosome" evidence=IDA] InterPro:IPR000253 InterPro:IPR000467
InterPro:IPR008984 Pfam:PF00498 Pfam:PF01585 PROSITE:PS50006
PROSITE:PS50174 SMART:SM00240 SMART:SM00443 EMBL:AE013599
GO:GO:0003676 Gene3D:2.60.200.20 SUPFAM:SSF49879
GeneTree:ENSGT00510000046476 GO:GO:0071011 GO:GO:0000398
UniGene:Dm.30922 GeneID:36689 KEGG:dme:Dmel_CG8079
FlyBase:FBgn0034002 GenomeRNAi:36689 NextBio:799880 EMBL:AY069548
RefSeq:NP_611023.1 SMR:Q7K0W0 STRING:Q7K0W0
EnsemblMetazoa:FBtr0087368 UCSC:CG8079-RA InParanoid:Q7K0W0
OMA:QVQANDA Uniprot:Q7K0W0
Length = 601
Score = 144 (55.7 bits), Expect = 2.7e-11, Sum P(3) = 2.7e-11
Identities = 23/46 (50%), Positives = 31/46 (67%)
Query: 598 SGFVWDEASGYYYDAASGFYYDGNTGLYYDGNSGIWYSYDQQTQQY 643
+ FV++ SG YYD +G+YY+ GLYYDGN+G +YSYD Y
Sbjct: 129 NNFVYEHTSGMYYDPKTGYYYNAEYGLYYDGNNGCYYSYDHAKDSY 174
Score = 103 (41.3 bits), Expect = 2.7e-11, Sum P(3) = 2.7e-11
Identities = 29/99 (29%), Positives = 48/99 (48%)
Query: 953 GFTADSVQSYEVITADKAIDENNVGNRMLRSMGWHEGLGLGKDGS--GMIEPVQAQAMDS 1010
G + D ++ EV + I +N G +ML +GW +G LGK + G++EP+ A +
Sbjct: 497 GSSTDKEKT-EVACVNTEIGSSNKGFKMLSKLGWQKGEKLGKTNASAGLLEPINVVANEG 555
Query: 1011 RAGLGSQQKKVDPSLEVQAGDSYKTLIHKKALARFREMS 1049
+GLG+ + S + D K K AR++ S
Sbjct: 556 TSGLGNSDPVLSSSRTI---DKRKLANLKITQARYQRAS 591
Score = 52 (23.4 bits), Expect = 3.6e-06, Sum P(3) = 3.6e-06
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 897 QTTYRDRAAERRSLYGSSFSAGD-DLPDVGS--GDSNRDFAL 935
Q+ Y DRAA RR GSS ++ V + G SN+ F +
Sbjct: 482 QSNYNDRAATRRVQVGSSTDKEKTEVACVNTEIGSSNKGFKM 523
Score = 38 (18.4 bits), Expect = 2.7e-11, Sum P(3) = 2.7e-11
Identities = 13/57 (22%), Positives = 27/57 (47%)
Query: 78 EEDYSLDRESRRHEKPYIDSYHEMDAYCGHEIDSFPEFDKFRDGYRNIENYRDHGFE 134
E YS++ + ++K D +++ A D+F D+ R ++ EN + +E
Sbjct: 86 ECQYSMENDEDTNKK---DQPNDLSA-----TDAFSFVDEMRQAAKHAENLNNFVYE 134
>TAIR|locus:2124306 [details] [associations]
symbol:AT4G34140 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM]
InterPro:IPR000467 Pfam:PF01585 PROSITE:PS50174 SMART:SM00443
EMBL:CP002687 GO:GO:0003676 IPI:IPI00539127 RefSeq:NP_195140.5
UniGene:At.31524 ProteinModelPortal:F4JKK9
EnsemblPlants:AT4G34140.1 GeneID:829562 KEGG:ath:AT4G34140
Uniprot:F4JKK9
Length = 530
Score = 103 (41.3 bits), Expect = 6.3e-10, Sum P(3) = 6.3e-10
Identities = 25/77 (32%), Positives = 39/77 (50%)
Query: 597 QSGFVWDEASGYYYDAASGFYYDGNTGLYYDGNSGIWYSYDQQTQQYIPCT-DQNDNKTS 655
+ +VWD + Y +SGFY+D N G YY G +Y ++ +Y+P D++
Sbjct: 14 EDSYVWDSDTQLYIHHSSGFYHDPNAGWYYCSKDGRYYKHENG--EYVPLEYDESSVNPP 71
Query: 656 GN--GSEPSKQVDGGSK 670
G+ EPS+ D G K
Sbjct: 72 GDIVTYEPSED-DLGRK 87
Score = 101 (40.6 bits), Expect = 6.3e-10, Sum P(3) = 6.3e-10
Identities = 27/86 (31%), Positives = 43/86 (50%)
Query: 936 KKGS-VDSMPFPPGVGGRGFTADSVQSYEVITADKAIDENNVGNRMLRSMGWHEGLGLGK 994
+KG+ VD V G D+V E + + + + R++ +MGW EG LGK
Sbjct: 447 QKGTTVDHNTDEHSVPDTGSEEDTVA--EAL--ELSFGSGSYARRIMGNMGWKEGETLGK 502
Query: 995 DGSGMIEPVQAQAMDSRAGLGSQQKK 1020
+ G++EP+QA GLG Q++
Sbjct: 503 NTKGLVEPIQAVGNTGNVGLGFPQRR 528
Score = 68 (29.0 bits), Expect = 6.3e-10, Sum P(3) = 6.3e-10
Identities = 13/20 (65%), Positives = 17/20 (85%)
Query: 893 KEQPQTTYRDRAAERRSLYG 912
+EQ +YRDRAAERR+L+G
Sbjct: 420 EEQRSCSYRDRAAERRNLHG 439
>UNIPROTKB|P98179 [details] [associations]
symbol:RBM3 "Putative RNA-binding protein 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030425
"dendrite" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0015934
"large ribosomal subunit" evidence=ISS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
GO:GO:0045727 eggNOG:COG0724 GO:GO:0015934 HOVERGEN:HBG107480
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GO:GO:0035196 EMBL:AF196969
GO:GO:0043023 EMBL:U28686 EMBL:BC006825 IPI:IPI00024320 PIR:G01859
RefSeq:NP_006734.1 UniGene:Hs.301404 ProteinModelPortal:P98179
SMR:P98179 IntAct:P98179 MINT:MINT-5002714 STRING:P98179
PhosphoSite:P98179 DMDM:1710620 PaxDb:P98179 PeptideAtlas:P98179
PRIDE:P98179 DNASU:5935 Ensembl:ENST00000376755
Ensembl:ENST00000376759 GeneID:5935 KEGG:hsa:5935 UCSC:uc004dkf.2
CTD:5935 GeneCards:GC0XP048432 HGNC:HGNC:9900 HPA:HPA003624
MIM:300027 neXtProt:NX_P98179 PharmGKB:PA34265 InParanoid:P98179
KO:K13186 OMA:SDAMRAM PhylomeDB:P98179 ChiTaRS:RBM3 GenomeRNAi:5935
NextBio:23136 ArrayExpress:P98179 Bgee:P98179 CleanEx:HS_RBM3
Genevestigator:P98179 GermOnline:ENSG00000102317 Uniprot:P98179
Length = 157
Score = 136 (52.9 bits), Expect = 6.3e-10, Sum P(2) = 6.3e-10
Identities = 35/83 (42%), Positives = 50/83 (60%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
L V GL+ DE+ L FS PI ++ +V+D+ T SRGF F+ F + E AS A+ A
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAM 67
Query: 510 NGTTLEKNGQILRVAYA-KSILG 531
NG +L+ G+ +RV +A KS G
Sbjct: 68 NGESLD--GRQIRVDHAGKSARG 88
Score = 125 (49.1 bits), Expect = 9.0e-09, Sum P(2) = 9.0e-09
Identities = 31/92 (33%), Positives = 50/92 (54%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
G + V GL+ T E+ L + +GP+ V V+K+R + SRGF FI F + A M
Sbjct: 6 GKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMR 65
Query: 347 RIGDDGLVVDGRKLFFEYSSKPTGGS-GGHYG 377
+ + L DGR++ +++ K G+ GG +G
Sbjct: 66 AMNGESL--DGRQIRVDHAGKSARGTRGGGFG 95
Score = 43 (20.2 bits), Expect = 6.3e-10, Sum P(2) = 6.3e-10
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 606 SGYYYDAASGFY-YDGNTGLYYDG-NSGIWYSY 636
SG YYD+ G Y Y Y+G N G + Y
Sbjct: 114 SGRYYDSRPGGYGYGYGRSRDYNGRNQGGYDRY 146
>ZFIN|ZDB-GENE-050417-329 [details] [associations]
symbol:zgc:112425 "zgc:112425" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
Length = 185
Score = 138 (53.6 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 31/95 (32%), Positives = 52/95 (54%)
Query: 283 VAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAAR 342
++ G + + GLS TTE+ L +++G + +V V + R + SRGF F+ F + A+
Sbjct: 1 MSDEGKLFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAK 60
Query: 343 AMMDRIGDDGLVVDGRKLFFEYSSKPTGGSGGHYG 377
++ G +G VDGR + + + K GG GG G
Sbjct: 61 DALE--GMNGKSVDGRTIRVDEAGKGGGGGGGRSG 93
Score = 118 (46.6 bits), Expect = 0.00012, P = 0.00012
Identities = 30/82 (36%), Positives = 47/82 (57%)
Query: 442 SDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVED 501
SD G L + GL E+ L FSK+ I ++ + R++ T+ SRGF F+ F + +D
Sbjct: 2 SDEGK---LFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDD 58
Query: 502 ASKALEATNGTTLEKNGQILRV 523
A ALE NG +++ G+ +RV
Sbjct: 59 AKDALEGMNGKSVD--GRTIRV 78
Score = 39 (18.8 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 369 TGGSGGHYGQE--SAMGARHSNHK 390
+ G GG Y ++ S G R S++K
Sbjct: 152 SSGGGGGYNRDRGSGYGDRSSSYK 175
>FB|FBgn0038345 [details] [associations]
symbol:CG5213 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339
GeneTree:ENSGT00560000077064 EMBL:AY089405 RefSeq:NP_650473.1
UniGene:Dm.5039 SMR:Q9VF55 STRING:Q9VF55 EnsemblMetazoa:FBtr0083148
GeneID:41892 KEGG:dme:Dmel_CG5213 UCSC:CG5213-RA
FlyBase:FBgn0038345 eggNOG:NOG294033 InParanoid:Q9VF55 OMA:RRERTND
OrthoDB:EOG4DNCM8 GenomeRNAi:41892 NextBio:826136 Uniprot:Q9VF55
Length = 251
Score = 108 (43.1 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 28/78 (35%), Positives = 40/78 (51%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
L V L Y DE+ +R F+ + I D+ L+R KF + SRG AFL F V DA A
Sbjct: 129 LYVGNLPTYMDEKKVRELFATYGNIVDVNLLRHKFNNRSRGVAFLQFELVRDAEVAKYGM 188
Query: 510 NGTTLEKNGQILRVAYAK 527
+ +E + L V + +
Sbjct: 189 DRYMIEGASRPLTVKFVE 206
Score = 107 (42.7 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 21/72 (29%), Positives = 44/72 (61%)
Query: 289 IVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRI 348
+++ L Q TE +L+++ +++G +R ++I+ R +G+S + F+D+ S A A ++
Sbjct: 43 LILNYLPQDMTESELHRLFSKFGEIRKAKIIRHRRTGISCCYGFVDYVSERQAAAAVN-- 100
Query: 349 GDDGLVVDGRKL 360
G DG G++L
Sbjct: 101 GMDGYETRGKRL 112
>UNIPROTKB|B4DQI6 [details] [associations]
symbol:TRA2A "cDNA FLJ50614, highly similar to
Transformer-2 protein homolog" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107480 IPI:IPI00220447
UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A EMBL:AC023105
EMBL:AK298815 SMR:B4DQI6 STRING:B4DQI6 Ensembl:ENST00000392502
Uniprot:B4DQI6
Length = 180
Score = 150 (57.9 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 31/81 (38%), Positives = 52/81 (64%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
P+ + V GLS TTE DL ++ + +GPL V V+ ++ +G SRGFAF+ F + ++
Sbjct: 16 PNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEA 75
Query: 345 MDRIGDDGLVVDGRKLFFEYS 365
M+R +G+ +DGR++ +YS
Sbjct: 76 MERA--NGMELDGRRIRVDYS 94
Score = 146 (56.5 bits), Expect = 5.0e-09, P = 5.0e-09
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKA 505
P L V GL Y E LR FS++ P+ + +V D+ T SRGFAF++F ++D+ +A
Sbjct: 16 PNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEA 75
Query: 506 LEATNGTTLEKNGQILRVAYA 526
+E NG +E +G+ +RV Y+
Sbjct: 76 MERANG--MELDGRRIRVDYS 94
>UNIPROTKB|B4DUA9 [details] [associations]
symbol:TRA2A "Transformer-2 protein homolog alpha"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A
EMBL:AC023105 EMBL:AK300565 EMBL:AK300741 IPI:IPI01014274
SMR:B4DUA9 STRING:B4DUA9 Ensembl:ENST00000538367 Uniprot:B4DUA9
Length = 181
Score = 150 (57.9 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 31/81 (38%), Positives = 52/81 (64%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
P+ + V GLS TTE DL ++ + +GPL V V+ ++ +G SRGFAF+ F + ++
Sbjct: 16 PNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEA 75
Query: 345 MDRIGDDGLVVDGRKLFFEYS 365
M+R +G+ +DGR++ +YS
Sbjct: 76 MERA--NGMELDGRRIRVDYS 94
Score = 146 (56.5 bits), Expect = 5.0e-09, P = 5.0e-09
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKA 505
P L V GL Y E LR FS++ P+ + +V D+ T SRGFAF++F ++D+ +A
Sbjct: 16 PNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEA 75
Query: 506 LEATNGTTLEKNGQILRVAYA 526
+E NG +E +G+ +RV Y+
Sbjct: 76 MERANG--MELDGRRIRVDYS 94
>TAIR|locus:2136298 [details] [associations]
symbol:CCR1 "cold, circadian rhythm, and RNA binding 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0005618 "cell wall" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0009651 "response to salt
stress" evidence=IEP] [GO:0005777 "peroxisome" evidence=IDA]
[GO:0010043 "response to zinc ion" evidence=IEP] [GO:0009737
"response to abscisic acid stimulus" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
[GO:0048046 "apoplast" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0000380 "alternative mRNA splicing, via spliceosome"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005886 GO:GO:0009506
GO:GO:0009737 GO:GO:0005794 GO:GO:0005618 GO:GO:0009507
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0005730 GO:GO:0005777
GO:GO:0000166 GO:GO:0010043 GO:GO:0048046 GO:GO:0009651
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003723
EMBL:AL161594 eggNOG:COG0724 EMBL:AL050351 GO:GO:0000380
HOGENOM:HOG000276232 UniGene:At.23968 ProtClustDB:CLSN2913158
EMBL:Z14988 EMBL:L00649 EMBL:L04171 EMBL:AY034997 EMBL:AY063005
IPI:IPI00520057 IPI:IPI00526742 PIR:S30148 RefSeq:NP_195637.1
ProteinModelPortal:Q03251 SMR:Q03251 MINT:MINT-1163792
STRING:Q03251 PaxDb:Q03251 PRIDE:Q03251 ProMEX:Q03251
EnsemblPlants:AT4G39260.1 GeneID:830082 KEGG:ath:AT4G39260
TAIR:At4g39260 InParanoid:Q03251 OMA:GNNSGGY Genevestigator:Q03251
Uniprot:Q03251
Length = 169
Score = 131 (51.2 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 33/89 (37%), Positives = 51/89 (57%)
Query: 291 VKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGD 350
V GL+ T +EDL + +++G + ++I +R SG SRGF F+ F +AM D I +
Sbjct: 10 VGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKD---EKAMRDAIEE 66
Query: 351 -DGLVVDGRKLFF-EYSSKPTGGSGGHYG 377
+G +DGR + E S+ +GG GG G
Sbjct: 67 MNGKELDGRVITVNEAQSRGSGGGGGGRG 95
Score = 40 (19.1 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 11/29 (37%), Positives = 12/29 (41%)
Query: 606 SGYYYDAASGFYYDGNTGLYYDGNSGIWY 634
SG Y + G Y G G Y G G Y
Sbjct: 97 SGGGYRSGGGGGYSGGGGGGYSGGGGGGY 125
Score = 38 (18.4 bits), Expect = 6.9e-09, Sum P(2) = 6.9e-09
Identities = 11/34 (32%), Positives = 13/34 (38%)
Query: 598 SGFVWDEASGYYYDAASGFYYDGNTGLYYDGNSG 631
SG + G Y G Y G G Y+ SG
Sbjct: 97 SGGGYRSGGGGGYSGGGGGGYSGGGGGGYERRSG 130
>TAIR|locus:2184837 [details] [associations]
symbol:AT5G09390 "AT5G09390" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] EMBL:CP002688 eggNOG:NOG301637 KO:K13099 EMBL:AY085215
EMBL:AY123988 EMBL:BT000562 IPI:IPI00541029 RefSeq:NP_568211.1
UniGene:At.27973 STRING:Q8L4S3 PaxDb:Q8L4S3 PRIDE:Q8L4S3
EnsemblPlants:AT5G09390.1 GeneID:830798 KEGG:ath:AT5G09390
TAIR:At5g09390 HOGENOM:HOG000243095 InParanoid:Q8L4S3 OMA:EGYFDAD
PhylomeDB:Q8L4S3 ProtClustDB:CLSN2689558 Genevestigator:Q8L4S3
Uniprot:Q8L4S3
Length = 351
Score = 166 (63.5 bits), Expect = 4.5e-09, P = 4.5e-09
Identities = 29/75 (38%), Positives = 45/75 (60%)
Query: 569 YNPDDKQPTRGQEQRSDGDMVQKDGLALQSGFVWDEASGYYYDAASGFYYDGNTGLYYDG 628
+ D+ P + + + G L S +V+DE+SGYYY ++ G+YYD NTGLY
Sbjct: 268 FGDDENAPEPSSDLQPSSSI---SGTQLNSDYVFDESSGYYYSSSLGYYYDPNTGLYCYA 324
Query: 629 NSGIWYSYDQQTQQY 643
+G WY YD++T++Y
Sbjct: 325 TTGKWYRYDEETKEY 339
>UNIPROTKB|E1BZU3 [details] [associations]
symbol:RBM6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000467 InterPro:IPR000504 InterPro:IPR001876
InterPro:IPR012677 InterPro:IPR015880 Pfam:PF01585 PROSITE:PS01358
PROSITE:PS50174 SMART:SM00355 SMART:SM00360 SMART:SM00443
SMART:SM00547 GO:GO:0005634 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00510000046476
OMA:YDLDFRG EMBL:AADN02056480 EMBL:AADN02056481 EMBL:AADN02056482
IPI:IPI00819472 Ensembl:ENSGALT00000004643 Uniprot:E1BZU3
Length = 1119
Score = 129 (50.5 bits), Expect = 5.5e-09, Sum P(4) = 5.5e-09
Identities = 28/81 (34%), Positives = 47/81 (58%)
Query: 968 DKAIDENNVGNRMLRSMGWHEGLGLGKDGSGMIEPVQAQAMDSRAGLGSQQKKVDPSLEV 1027
D ID NN GNRML+S GW +G G + G+ P++A+ GLG+Q + P+
Sbjct: 1044 DPRIDSNNKGNRMLQSTGWKKGFGHNQQGT--TSPMEAENRKRGPGLGAQGR---PNRR- 1097
Query: 1028 QAGDSYKTLIHKKALARFREM 1048
Q+ ++Y+ + + AR++E+
Sbjct: 1098 QSNETYRDAVRRVMFARYKEL 1118
Score = 76 (31.8 bits), Expect = 5.5e-09, Sum P(4) = 5.5e-09
Identities = 24/86 (27%), Positives = 38/86 (44%)
Query: 575 QPTRGQEQRSDGDMVQKDGLALQSGFVWDEASGYYYDAASGFYYDGNTGLYYDGNSGIWY 634
Q RG R G+ ++ QS + S Y YD +G YYD G YYD +
Sbjct: 763 QGRRGMRDRRGGESQRRT--RAQSP---SDVSTYIYDPETGNYYDPIAGTYYDPRTQREV 817
Query: 635 SYDQQTQQYIPCTDQNDNKTSGNGSE 660
+ D++ PC+ +N+ + S+
Sbjct: 818 TIDRE-----PCSSPPENRRRRHESQ 838
Score = 70 (29.7 bits), Expect = 5.5e-09, Sum P(4) = 5.5e-09
Identities = 23/99 (23%), Positives = 48/99 (48%)
Query: 286 SGTIVVKGLSQKTTEEDLYQILAEWGPLR--HVRVIKERNSGVSRGFAFIDFPSVGAARA 343
S TI++K +++ T E + +LA + + +VR++K + + + + FI+ S A
Sbjct: 661 SRTIMLKRITRFTPPEVIVGLLAPYVRISTSNVRIMKNKAGRMGQTYGFIELDSHAEALR 720
Query: 344 MMDRIG--DDGLVVDGRKLFFEYSSKPTGGSGGHYGQES 380
++ + D + +DGR L ++ G +G S
Sbjct: 721 LLKILQNLDPPICIDGRTLEVNLATGRRRNDYGEHGDNS 759
Score = 62 (26.9 bits), Expect = 3.3e-08, Sum P(4) = 3.3e-08
Identities = 21/82 (25%), Positives = 41/82 (50%)
Query: 446 PTHVLVVRGLDEYA--DEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDAS 503
P+ ++ + G+ E A D+ + + P+K+LRL +D + + + F +E+A
Sbjct: 468 PSKLIRLGGVPETATKDDILNAFRGPDGMPVKNLRL-KDYSSGYDYRYVCVEFSLLEEAI 526
Query: 504 KALEATNGTTLEKNGQILRVAY 525
+EA GT L G+ + + Y
Sbjct: 527 GCMEANQGT-LTIGGEEVTLEY 547
Score = 54 (24.1 bits), Expect = 2.0e-07, Sum P(4) = 2.0e-07
Identities = 25/102 (24%), Positives = 37/102 (36%)
Query: 347 RIGDDGLVVDGRKLFFEYS--SKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGC 404
R+ D D R + E+S + G + G + G + + P W C C
Sbjct: 502 RLKDYSSGYDYRYVCVEFSLLEEAIGCMEANQGTLTIGGEEVTLEYTLCPEFWRCKRCKV 561
Query: 405 VNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKGSDTGP 446
N R+SC C R DA +P+ + GS P
Sbjct: 562 CNVGYRSSCSYCKLPR--DAETKLEKPEQELPV-QPGSPKQP 600
Score = 53 (23.7 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 892 QKEQPQTTYRDRAAERRSLYGSSFSAGDDLPDVG-SGDSNRDF 933
Q+EQPQT + ++ +++ L G D D+G G+ + DF
Sbjct: 366 QEEQPQT-FANKQQQQQQLSGGEQQRSDS--DLGLKGEDDLDF 405
Score = 41 (19.5 bits), Expect = 5.5e-09, Sum P(4) = 5.5e-09
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 886 PLPPATQKEQPQ 897
P PPA ++EQP+
Sbjct: 931 PHPPAQREEQPR 942
Score = 39 (18.8 bits), Expect = 8.6e-09, Sum P(4) = 8.6e-09
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 862 DASALGSYTPPVATGSGKRRFSE----MPLPPATQKEQ 895
D G TP ++ F+E PLPP+ +K++
Sbjct: 854 DKKEKGKNTPAKNDCGEEKFFAEDVFKKPLPPSVKKDE 891
>UNIPROTKB|E1C875 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02000941 EMBL:AADN02000942
IPI:IPI00681985 ProteinModelPortal:E1C875
Ensembl:ENSGALT00000031186 Uniprot:E1C875
Length = 182
Score = 145 (56.1 bits), Expect = 6.4e-09, P = 6.4e-09
Identities = 30/81 (37%), Positives = 51/81 (62%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
P+ + V GLS TTE DL ++ + +GPL V V+ ++ +G SRGFAF+ F + ++
Sbjct: 16 PNTCLGVFGLSLYTTERDLREVFSRYGPLTGVNVVYDQRTGRSRGFAFVYFERIDDSKEA 75
Query: 345 MDRIGDDGLVVDGRKLFFEYS 365
M+ +G+ +DGR++ +YS
Sbjct: 76 MEHA--NGMELDGRRIRVDYS 94
Score = 144 (55.7 bits), Expect = 8.1e-09, P = 8.1e-09
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKA 505
P L V GL Y E LR FS++ P+ + +V D+ T SRGFAF++F ++D+ +A
Sbjct: 16 PNTCLGVFGLSLYTTERDLREVFSRYGPLTGVNVVYDQRTGRSRGFAFVYFERIDDSKEA 75
Query: 506 LEATNGTTLEKNGQILRVAYA 526
+E NG +E +G+ +RV Y+
Sbjct: 76 MEHANG--MELDGRRIRVDYS 94
>GENEDB_PFALCIPARUM|MAL13P1.120 [details] [associations]
symbol:MAL13P1.120 "splicing factor,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 EMBL:AL844509 HSSP:Q60900 TIGRFAMs:TIGR01622
KO:K13091 OMA:VDINIDE RefSeq:XP_001349956.1
ProteinModelPortal:Q8IE99 IntAct:Q8IE99 MINT:MINT-1582995
EnsemblProtists:MAL13P1.120:mRNA GeneID:813670 KEGG:pfa:MAL13P1.120
EuPathDB:PlasmoDB:PF3D7_1321700 ProtClustDB:CLSZ2848098
Uniprot:Q8IE99
Length = 864
Score = 112 (44.5 bits), Expect = 6.7e-09, Sum P(3) = 6.7e-09
Identities = 24/67 (35%), Positives = 39/67 (58%)
Query: 461 EEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQI 520
E+ L+ F+ I D+ + RD +T S+GF F+ FH +A +AL NG +E G+
Sbjct: 602 EQELKQLFNPFGDILDVEIHRDPYTGKSKGFGFIQFHKASEAIEALTVMNG--MEVAGRE 659
Query: 521 LRVAYAK 527
++V YA+
Sbjct: 660 IKVGYAQ 666
Score = 100 (40.3 bits), Expect = 6.7e-09, Sum P(3) = 6.7e-09
Identities = 22/79 (27%), Positives = 46/79 (58%)
Query: 288 TIVVKGLSQKTTEEDLYQILAEW-GPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
T++V L K E D+Y+ +E G +R ++ IK++ SG S+G A+++F + A++
Sbjct: 488 TVLVLNLDLKADERDIYEFFSEVAGKVRDIQCIKDQRSGKSKGVAYVEFYT---QEAVIK 544
Query: 347 RIGDDGLVVDGRKLFFEYS 365
+ +G+++ R + + S
Sbjct: 545 ALAANGMMLKNRPIKIQSS 563
Score = 57 (25.1 bits), Expect = 6.7e-09, Sum P(3) = 6.7e-09
Identities = 18/65 (27%), Positives = 28/65 (43%)
Query: 71 QSRRRNYEEDYSLDRESRRHEKPYIDSYHEMDAYCGHEIDSFPEFDKFRDGYRNIENYRD 130
+ R R+ + D DR+ R D + D + D + D++RD R + YRD
Sbjct: 367 RERERDRDRDRDRDRDRDRDRDRDRDRDRDRDREREKDKDRDRDHDRYRD--RERDRYRD 424
Query: 131 HGFER 135
ER
Sbjct: 425 RERER 429
Score = 54 (24.1 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
Identities = 17/65 (26%), Positives = 28/65 (43%)
Query: 71 QSRRRNYEEDYSLDRESRRHEKPYIDSYHEMDAYCGHEIDSFPEFDKFRDGYRNIENYRD 130
+ R R+ + D DR+ R + D + D Y E D + + ++ R R E R+
Sbjct: 381 RDRDRDRDRDRDRDRDRDREREKDKDRDRDHDRYRDRERDRYRDRERERRKDRERERERE 440
Query: 131 HGFER 135
ER
Sbjct: 441 REKER 445
Score = 51 (23.0 bits), Expect = 2.7e-08, Sum P(3) = 2.7e-08
Identities = 19/65 (29%), Positives = 27/65 (41%)
Query: 71 QSRRRNYEEDYSLDRESRRHEKPYIDSYHEMDAYCGHEIDSFPEFDKFRDGYRNIENYRD 130
+ R R+ + D DR+ R D E D + D + D+ RD YR+ E R
Sbjct: 373 RDRDRDRDRDRDRDRDRDRDRDRDRDREREKDKDRDRDHDRYR--DRERDRYRDRERERR 430
Query: 131 HGFER 135
ER
Sbjct: 431 KDRER 435
Score = 50 (22.7 bits), Expect = 3.4e-08, Sum P(3) = 3.4e-08
Identities = 19/67 (28%), Positives = 30/67 (44%)
Query: 69 WPQSRRRNYEEDYSLDRESRRHEKPYIDSYHEMDAYCGHEIDSFPEFDKFRDGYRNIENY 128
+ + +RR+ E + DR+ R D + D + D E DK RD R+ + Y
Sbjct: 359 YDKMKRRDRERERDRDRDRDRDRDRDRDRDRDRDR--DRDRDREREKDKDRD--RDHDRY 414
Query: 129 RDHGFER 135
RD +R
Sbjct: 415 RDRERDR 421
Score = 43 (20.2 bits), Expect = 1.7e-07, Sum P(3) = 1.7e-07
Identities = 14/53 (26%), Positives = 20/53 (37%)
Query: 161 QSREDSREGDCDFGRLXXXXXXXXXXXXXXXXXXHE-SRDRERDKRCLSRERE 212
+ RE ++ D D R E R+RER+K + RE E
Sbjct: 399 REREKDKDRDRDHDRYRDRERDRYRDRERERRKDREREREREREKERIRRENE 451
>UNIPROTKB|Q8IE99 [details] [associations]
symbol:MAL13P1.120 "Splicing factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 EMBL:AL844509 HSSP:Q60900 TIGRFAMs:TIGR01622
KO:K13091 OMA:VDINIDE RefSeq:XP_001349956.1
ProteinModelPortal:Q8IE99 IntAct:Q8IE99 MINT:MINT-1582995
EnsemblProtists:MAL13P1.120:mRNA GeneID:813670 KEGG:pfa:MAL13P1.120
EuPathDB:PlasmoDB:PF3D7_1321700 ProtClustDB:CLSZ2848098
Uniprot:Q8IE99
Length = 864
Score = 112 (44.5 bits), Expect = 6.7e-09, Sum P(3) = 6.7e-09
Identities = 24/67 (35%), Positives = 39/67 (58%)
Query: 461 EEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQI 520
E+ L+ F+ I D+ + RD +T S+GF F+ FH +A +AL NG +E G+
Sbjct: 602 EQELKQLFNPFGDILDVEIHRDPYTGKSKGFGFIQFHKASEAIEALTVMNG--MEVAGRE 659
Query: 521 LRVAYAK 527
++V YA+
Sbjct: 660 IKVGYAQ 666
Score = 100 (40.3 bits), Expect = 6.7e-09, Sum P(3) = 6.7e-09
Identities = 22/79 (27%), Positives = 46/79 (58%)
Query: 288 TIVVKGLSQKTTEEDLYQILAEW-GPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
T++V L K E D+Y+ +E G +R ++ IK++ SG S+G A+++F + A++
Sbjct: 488 TVLVLNLDLKADERDIYEFFSEVAGKVRDIQCIKDQRSGKSKGVAYVEFYT---QEAVIK 544
Query: 347 RIGDDGLVVDGRKLFFEYS 365
+ +G+++ R + + S
Sbjct: 545 ALAANGMMLKNRPIKIQSS 563
Score = 57 (25.1 bits), Expect = 6.7e-09, Sum P(3) = 6.7e-09
Identities = 18/65 (27%), Positives = 28/65 (43%)
Query: 71 QSRRRNYEEDYSLDRESRRHEKPYIDSYHEMDAYCGHEIDSFPEFDKFRDGYRNIENYRD 130
+ R R+ + D DR+ R D + D + D + D++RD R + YRD
Sbjct: 367 RERERDRDRDRDRDRDRDRDRDRDRDRDRDRDREREKDKDRDRDHDRYRD--RERDRYRD 424
Query: 131 HGFER 135
ER
Sbjct: 425 RERER 429
Score = 54 (24.1 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
Identities = 17/65 (26%), Positives = 28/65 (43%)
Query: 71 QSRRRNYEEDYSLDRESRRHEKPYIDSYHEMDAYCGHEIDSFPEFDKFRDGYRNIENYRD 130
+ R R+ + D DR+ R + D + D Y E D + + ++ R R E R+
Sbjct: 381 RDRDRDRDRDRDRDRDRDREREKDKDRDRDHDRYRDRERDRYRDRERERRKDRERERERE 440
Query: 131 HGFER 135
ER
Sbjct: 441 REKER 445
Score = 51 (23.0 bits), Expect = 2.7e-08, Sum P(3) = 2.7e-08
Identities = 19/65 (29%), Positives = 27/65 (41%)
Query: 71 QSRRRNYEEDYSLDRESRRHEKPYIDSYHEMDAYCGHEIDSFPEFDKFRDGYRNIENYRD 130
+ R R+ + D DR+ R D E D + D + D+ RD YR+ E R
Sbjct: 373 RDRDRDRDRDRDRDRDRDRDRDRDRDREREKDKDRDRDHDRYR--DRERDRYRDRERERR 430
Query: 131 HGFER 135
ER
Sbjct: 431 KDRER 435
Score = 50 (22.7 bits), Expect = 3.4e-08, Sum P(3) = 3.4e-08
Identities = 19/67 (28%), Positives = 30/67 (44%)
Query: 69 WPQSRRRNYEEDYSLDRESRRHEKPYIDSYHEMDAYCGHEIDSFPEFDKFRDGYRNIENY 128
+ + +RR+ E + DR+ R D + D + D E DK RD R+ + Y
Sbjct: 359 YDKMKRRDRERERDRDRDRDRDRDRDRDRDRDRDR--DRDRDREREKDKDRD--RDHDRY 414
Query: 129 RDHGFER 135
RD +R
Sbjct: 415 RDRERDR 421
Score = 43 (20.2 bits), Expect = 1.7e-07, Sum P(3) = 1.7e-07
Identities = 14/53 (26%), Positives = 20/53 (37%)
Query: 161 QSREDSREGDCDFGRLXXXXXXXXXXXXXXXXXXHE-SRDRERDKRCLSRERE 212
+ RE ++ D D R E R+RER+K + RE E
Sbjct: 399 REREKDKDRDRDHDRYRDRERDRYRDRERERRKDREREREREREKERIRRENE 451
>UNIPROTKB|I3L834 [details] [associations]
symbol:GPATCH2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010923 "negative regulation of phosphatase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000467 Pfam:PF01585 PROSITE:PS50174 SMART:SM00443
GO:GO:0003676 GO:GO:0010923 GeneTree:ENSGT00410000025698
EMBL:CU855830 Ensembl:ENSSSCT00000025633 Uniprot:I3L834
Length = 185
Score = 144 (55.7 bits), Expect = 8.1e-09, P = 8.1e-09
Identities = 26/52 (50%), Positives = 34/52 (65%)
Query: 973 ENNVGNRMLRSMGWHEGLGLGKDGSGMIEPVQAQAMDSRAGLGSQQKKVDPS 1024
+NN+GNRML++MGW G GLG+DG G+ EP+QA GLG K P+
Sbjct: 124 DNNIGNRMLQNMGWTPGSGLGRDGKGIAEPIQAMQRPKGLGLGFPLPKTTPA 175
>UNIPROTKB|F1SMV6 [details] [associations]
symbol:LOC100737174 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:CU856676
Ensembl:ENSSSCT00000017723 Uniprot:F1SMV6
Length = 365
Score = 164 (62.8 bits), Expect = 8.4e-09, P = 8.4e-09
Identities = 40/102 (39%), Positives = 60/102 (58%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
PS T+ VKGLS++TTEE L + G +R R++ +R +G S+GF F+DF S A+A
Sbjct: 224 PSKTLFVKGLSEETTEETLKESFD--GSIR-ARIVTDRETGSSKGFGFVDFNSEEDAKAA 280
Query: 345 MDRIGDDGLVVDGRKLFFEYSS-KPTGGSGGHYGQESAMGAR 385
+ + +DG +DG K+ +++ K GG GG G G R
Sbjct: 281 KEAM-EDG-EIDGNKVTLDWAKPKGEGGFGGRGGGRGGFGGR 320
Score = 117 (46.2 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 35/98 (35%), Positives = 48/98 (48%)
Query: 436 PLGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLH 495
P G + + P+ L V+GL E EE L+ F I+ R+V D+ T S+GF F+
Sbjct: 214 PRGSPNARSQPSKTLFVKGLSEETTEETLKESFD--GSIR-ARIVTDRETGSSKGFGFVD 270
Query: 496 FHSVEDASKALEATNGTTLEKNGQILRVAYAKSILGPG 533
F+S EDA A EA ++ N L A K G G
Sbjct: 271 FNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGFG 308
Score = 97 (39.2 bits), Expect = 5.7e-05, Sum P(2) = 5.7e-05
Identities = 30/86 (34%), Positives = 44/86 (51%)
Query: 438 GKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFH 497
GK + +G + LV+ L A EE L+ F K IK V S+G+AF+ F
Sbjct: 130 GKNSTWSGESKTLVLSNLAYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFA 185
Query: 498 SVEDASKALEATNGTTLEKNGQILRV 523
S EDA +AL + N +E G+ +R+
Sbjct: 186 SFEDAKEALNSCNKREIE--GRAIRL 209
Score = 79 (32.9 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 19/80 (23%), Positives = 41/80 (51%)
Query: 288 TIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDR 347
T++ K L K T+++L ++ + +R++ + G S+G A+I+F + A ++
Sbjct: 48 TLLAKNLPYKVTQDELKEVFED---AVEIRLVSK--DGKSKGIAYIEFKTEADAEKTLEE 102
Query: 348 IGDDGLVVDGRKLFFEYSSK 367
G +DGR + Y+ +
Sbjct: 103 --KQGTEIDGRSISLYYTGE 120
Score = 78 (32.5 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
Identities = 24/85 (28%), Positives = 43/85 (50%)
Query: 286 SGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMM 345
S T+V+ L+ TEE L ++ + ++V + +N G S+G+AFI+F S A+ +
Sbjct: 139 SKTLVLSNLAYSATEETLQEVFEK---ATFIKVPQNQN-GKSKGYAFIEFASFEDAKEAL 194
Query: 346 DRIGDDGLVVDGRKLFFEYSSKPTG 370
+ ++GR + E P G
Sbjct: 195 NSCNKRE--IEGRAIRLELQG-PRG 216
>UNIPROTKB|H7BY16 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC017104 HGNC:HGNC:7667
ChiTaRS:NCL ProteinModelPortal:H7BY16 PRIDE:H7BY16
Ensembl:ENST00000356936 Bgee:H7BY16 Uniprot:H7BY16
Length = 297
Score = 161 (61.7 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 40/102 (39%), Positives = 59/102 (57%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
PS T+ VKGLS+ TTEE L + G +R R++ +R +G S+GF F+DF S A+A
Sbjct: 195 PSKTLFVKGLSEDTTEETLKESFD--GSVR-ARIVTDRETGSSKGFGFVDFNSEEDAKAA 251
Query: 345 MDRIGDDGLVVDGRKLFFEYSS-KPTGGSGGHYGQESAMGAR 385
+ + +DG +DG K+ +++ K GG GG G G R
Sbjct: 252 KEAM-EDG-EIDGNKVTLDWAKPKGEGGFGGRGGGRGGFGGR 291
Score = 115 (45.5 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 34/98 (34%), Positives = 48/98 (48%)
Query: 436 PLGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLH 495
P G + + P+ L V+GL E EE L+ F ++ R+V D+ T S+GF F+
Sbjct: 185 PRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSVR-ARIVTDRETGSSKGFGFVD 241
Query: 496 FHSVEDASKALEATNGTTLEKNGQILRVAYAKSILGPG 533
F+S EDA A EA ++ N L A K G G
Sbjct: 242 FNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGFG 279
Score = 83 (34.3 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 25/90 (27%), Positives = 45/90 (50%)
Query: 281 YAVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGA 340
+ + S T+V+ LS TEE L ++ + ++V + +N G S+G+AFI+F S
Sbjct: 105 HVLGESKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNQN-GKSKGYAFIEFASFED 160
Query: 341 ARAMMDRIGDDGLVVDGRKLFFEYSSKPTG 370
A+ ++ ++GR + E P G
Sbjct: 161 AKEALNSCNKRE--IEGRAIRLELQG-PRG 187
Score = 66 (28.3 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 17/74 (22%), Positives = 36/74 (48%)
Query: 294 LSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGL 353
L K T+++L ++ + +R++ + G S+G A+I+F + A + G
Sbjct: 1 LPYKVTQDELKEVFED---AAEIRLVSK--DGKSKGIAYIEFKTEADAEKTFEE--KQGT 53
Query: 354 VVDGRKLFFEYSSK 367
+DGR + Y+ +
Sbjct: 54 EIDGRSISLYYTGE 67
>WB|WBGene00013224 [details] [associations]
symbol:Y55D9A.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000253
InterPro:IPR000467 InterPro:IPR008984 Pfam:PF01585 PROSITE:PS50174
SMART:SM00443 GO:GO:0003676 Gene3D:2.60.200.20 SUPFAM:SSF49879
eggNOG:NOG270400 GeneTree:ENSGT00510000046476 EMBL:AL032649
PIR:T27191 RefSeq:NP_502415.1 ProteinModelPortal:Q95Q15 SMR:Q95Q15
IntAct:Q95Q15 STRING:Q95Q15 PaxDb:Q95Q15 PRIDE:Q95Q15
EnsemblMetazoa:Y55D9A.2b GeneID:178216 KEGG:cel:CELE_Y55D9A.2
UCSC:Y55D9A.2a CTD:178216 WormBase:Y55D9A.2b HOGENOM:HOG000020034
InParanoid:Q95Q15 OMA:FKLLKSM NextBio:900202 ArrayExpress:Q95Q15
Uniprot:Q95Q15
Length = 511
Score = 171 (65.3 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 42/112 (37%), Positives = 60/112 (53%)
Query: 938 GSVDSMPFPPGVGGRGFTADSVQS-YEVITADKAIDENNVGNRMLRSMGWHEGLGLGKDG 996
GS + P P G R F S + A K +D NVG ++L+SMGW EG GLGK+
Sbjct: 399 GSCAAKPMPEGQ--RKFDLPSTSAAVAAAAAPKPLDSGNVGFKLLKSMGWSEGQGLGKEK 456
Query: 997 SGMIEPVQAQAMDSRAGLGSQQKKVDPSLEVQAGDSYKTLIHKKALARFREM 1048
G +EPV + ++R GLG+ +K +P + SYK + +K RF E+
Sbjct: 457 QGHVEPVATEVKNNRKGLGANEK--EPPTK-----SYKDQVLEKTKQRFNEV 501
Score = 40 (19.1 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 7/36 (19%), Positives = 16/36 (44%)
Query: 609 YYDAASGFYYDGNTGLYYDGNSGIWYSYDQQTQQYI 644
Y+ G +Y+ +T +Y Y + + +Y+
Sbjct: 33 YWSHEHGMFYNPDTEQFYRPEDKTVYQLNAEGSEYV 68
>UNIPROTKB|H9L0U4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
Length = 167
Score = 131 (51.2 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 31/92 (33%), Positives = 54/92 (58%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
G ++V GLS T E+ L Q+ +++G + V V+K+R + SRGF F+ F ++ A+ M
Sbjct: 6 GKLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM- 64
Query: 347 RIGDDGLVVDGRKLFFEYSSKPTGG-SGGHYG 377
+ +G VDGR++ + + K + S G+ G
Sbjct: 65 -MAMNGKSVDGRQIRVDQAGKSSENRSRGYRG 95
Score = 127 (49.8 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 29/77 (37%), Positives = 48/77 (62%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
L+V GL +E+ L FSK+ I ++ +V+D+ T SRGF F+ F +++DA A+ A
Sbjct: 8 LLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 510 NGTTLEKNGQILRVAYA 526
NG +++ G+ +RV A
Sbjct: 68 NGKSVD--GRQIRVDQA 82
Score = 37 (18.1 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 10/29 (34%), Positives = 11/29 (37%)
Query: 925 GSGDSNRDFALKKGSVDSMPFPPGVGGRG 953
G NR + GS F G GRG
Sbjct: 83 GKSSENRSRGYRGGSTGGRGFFRGGRGRG 111
>UNIPROTKB|H9L3B3 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
Length = 172
Score = 131 (51.2 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 31/92 (33%), Positives = 54/92 (58%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
G ++V GLS T E+ L Q+ +++G + V V+K+R + SRGF F+ F ++ A+ M
Sbjct: 6 GKLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM- 64
Query: 347 RIGDDGLVVDGRKLFFEYSSKPTGG-SGGHYG 377
+ +G VDGR++ + + K + S G+ G
Sbjct: 65 -MAMNGKSVDGRQIRVDQAGKSSENRSRGYRG 95
Score = 127 (49.8 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 29/77 (37%), Positives = 48/77 (62%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
L+V GL +E+ L FSK+ I ++ +V+D+ T SRGF F+ F +++DA A+ A
Sbjct: 8 LLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 510 NGTTLEKNGQILRVAYA 526
NG +++ G+ +RV A
Sbjct: 68 NGKSVD--GRQIRVDQA 82
Score = 37 (18.1 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 10/29 (34%), Positives = 11/29 (37%)
Query: 925 GSGDSNRDFALKKGSVDSMPFPPGVGGRG 953
G NR + GS F G GRG
Sbjct: 83 GKSSENRSRGYRGGSTGGRGFFRGGRGRG 111
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 132 (51.5 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 32/97 (32%), Positives = 53/97 (54%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
G + V GLS T E+ L Q+ +++G + V V+K+R + SRGF F+ F ++ A+ M
Sbjct: 6 GKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM- 64
Query: 347 RIGDDGLVVDGRKLFFEYSSKPTGGSGGHYGQESAMG 383
+ +G VDGR++ + + K + Y SA G
Sbjct: 65 -MAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGG 100
Score = 126 (49.4 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 32/85 (37%), Positives = 50/85 (58%)
Query: 442 SDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVED 501
SD G L V GL +E+ L FSK+ I ++ +V+D+ T SRGF F+ F +++D
Sbjct: 3 SDEGK---LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 502 ASKALEATNGTTLEKNGQILRVAYA 526
A A+ A NG +++ G+ +RV A
Sbjct: 60 AKDAMMAMNGKSVD--GRQIRVDQA 82
Score = 37 (18.1 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 10/29 (34%), Positives = 11/29 (37%)
Query: 925 GSGDSNRDFALKKGSVDSMPFPPGVGGRG 953
G NR + GS F G GRG
Sbjct: 83 GKSSDNRSRGYRGGSAGGRGFFRGGRGRG 111
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 132 (51.5 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 32/97 (32%), Positives = 53/97 (54%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
G + V GLS T E+ L Q+ +++G + V V+K+R + SRGF F+ F ++ A+ M
Sbjct: 6 GKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM- 64
Query: 347 RIGDDGLVVDGRKLFFEYSSKPTGGSGGHYGQESAMG 383
+ +G VDGR++ + + K + Y SA G
Sbjct: 65 -MAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGG 100
Score = 126 (49.4 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 32/85 (37%), Positives = 50/85 (58%)
Query: 442 SDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVED 501
SD G L V GL +E+ L FSK+ I ++ +V+D+ T SRGF F+ F +++D
Sbjct: 3 SDEGK---LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 502 ASKALEATNGTTLEKNGQILRVAYA 526
A A+ A NG +++ G+ +RV A
Sbjct: 60 AKDAMMAMNGKSVD--GRQIRVDQA 82
Score = 37 (18.1 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 10/29 (34%), Positives = 11/29 (37%)
Query: 925 GSGDSNRDFALKKGSVDSMPFPPGVGGRG 953
G NR + GS F G GRG
Sbjct: 83 GKSSDNRSRGYRGGSAGGRGFFRGGRGRG 111
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 132 (51.5 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 32/97 (32%), Positives = 53/97 (54%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
G + V GLS T E+ L Q+ +++G + V V+K+R + SRGF F+ F ++ A+ M
Sbjct: 6 GKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM- 64
Query: 347 RIGDDGLVVDGRKLFFEYSSKPTGGSGGHYGQESAMG 383
+ +G VDGR++ + + K + Y SA G
Sbjct: 65 -MAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGG 100
Score = 126 (49.4 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 32/85 (37%), Positives = 50/85 (58%)
Query: 442 SDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVED 501
SD G L V GL +E+ L FSK+ I ++ +V+D+ T SRGF F+ F +++D
Sbjct: 3 SDEGK---LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 502 ASKALEATNGTTLEKNGQILRVAYA 526
A A+ A NG +++ G+ +RV A
Sbjct: 60 AKDAMMAMNGKSVD--GRQIRVDQA 82
Score = 37 (18.1 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 10/29 (34%), Positives = 11/29 (37%)
Query: 925 GSGDSNRDFALKKGSVDSMPFPPGVGGRG 953
G NR + GS F G GRG
Sbjct: 83 GKSSDNRSRGYRGGSAGGRGFFRGGRGRG 111
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 132 (51.5 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 32/97 (32%), Positives = 53/97 (54%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
G + V GLS T E+ L Q+ +++G + V V+K+R + SRGF F+ F ++ A+ M
Sbjct: 6 GKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM- 64
Query: 347 RIGDDGLVVDGRKLFFEYSSKPTGGSGGHYGQESAMG 383
+ +G VDGR++ + + K + Y SA G
Sbjct: 65 -MAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGG 100
Score = 126 (49.4 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 32/85 (37%), Positives = 50/85 (58%)
Query: 442 SDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVED 501
SD G L V GL +E+ L FSK+ I ++ +V+D+ T SRGF F+ F +++D
Sbjct: 3 SDEGK---LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 502 ASKALEATNGTTLEKNGQILRVAYA 526
A A+ A NG +++ G+ +RV A
Sbjct: 60 AKDAMMAMNGKSVD--GRQIRVDQA 82
Score = 37 (18.1 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 10/29 (34%), Positives = 11/29 (37%)
Query: 925 GSGDSNRDFALKKGSVDSMPFPPGVGGRG 953
G NR + GS F G GRG
Sbjct: 83 GKSSDNRSRGYRGGSAGGRGFFRGGRGRG 111
>UNIPROTKB|Q5RF83 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
Uniprot:Q5RF83
Length = 172
Score = 132 (51.5 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 32/97 (32%), Positives = 53/97 (54%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
G + V GLS T E+ L Q+ +++G + V V+K+R + SRGF F+ F ++ A+ M
Sbjct: 6 GKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM- 64
Query: 347 RIGDDGLVVDGRKLFFEYSSKPTGGSGGHYGQESAMG 383
+ +G VDGR++ + + K + Y SA G
Sbjct: 65 -MAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGG 100
Score = 126 (49.4 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 32/85 (37%), Positives = 50/85 (58%)
Query: 442 SDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVED 501
SD G L V GL +E+ L FSK+ I ++ +V+D+ T SRGF F+ F +++D
Sbjct: 3 SDEGK---LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 502 ASKALEATNGTTLEKNGQILRVAYA 526
A A+ A NG +++ G+ +RV A
Sbjct: 60 AKDAMMAMNGKSVD--GRQIRVDQA 82
Score = 37 (18.1 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 10/29 (34%), Positives = 11/29 (37%)
Query: 925 GSGDSNRDFALKKGSVDSMPFPPGVGGRG 953
G NR + GS F G GRG
Sbjct: 83 GKSSDNRSRGYRGGSAGGRGFFRGGRGRG 111
>UNIPROTKB|I3LRH2 [details] [associations]
symbol:LOC100737210 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 OMA:RLEYSQS RefSeq:XP_003133770.2
Ensembl:ENSSSCT00000032422 GeneID:100519984 KEGG:ssc:100519984
Uniprot:I3LRH2
Length = 724
Score = 164 (62.8 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 40/102 (39%), Positives = 60/102 (58%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
PS T+ VKGLS++TTEE L + G +R R++ +R +G S+GF F+DF S A+A
Sbjct: 583 PSKTLFVKGLSEETTEETLKESFD--GSIR-ARIVTDRETGSSKGFGFVDFNSEEDAKAA 639
Query: 345 MDRIGDDGLVVDGRKLFFEYSS-KPTGGSGGHYGQESAMGAR 385
+ + +DG +DG K+ +++ K GG GG G G R
Sbjct: 640 KEAM-EDG-EIDGNKVTLDWAKPKGEGGFGGRGGGRGGFGGR 679
Score = 117 (46.2 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 35/98 (35%), Positives = 48/98 (48%)
Query: 436 PLGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLH 495
P G + + P+ L V+GL E EE L+ F I+ R+V D+ T S+GF F+
Sbjct: 573 PRGSPNARSQPSKTLFVKGLSEETTEETLKESFD--GSIR-ARIVTDRETGSSKGFGFVD 629
Query: 496 FHSVEDASKALEATNGTTLEKNGQILRVAYAKSILGPG 533
F+S EDA A EA ++ N L A K G G
Sbjct: 630 FNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGFG 667
Score = 97 (39.2 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 30/86 (34%), Positives = 44/86 (51%)
Query: 438 GKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFH 497
GK + +G + LV+ L A EE L+ F K IK V S+G+AF+ F
Sbjct: 489 GKNSTWSGESKTLVLSNLAYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFA 544
Query: 498 SVEDASKALEATNGTTLEKNGQILRV 523
S EDA +AL + N +E G+ +R+
Sbjct: 545 SFEDAKEALNSCNKREIE--GRAIRL 568
Score = 79 (32.9 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 19/80 (23%), Positives = 41/80 (51%)
Query: 288 TIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDR 347
T++ K L K T+++L ++ + +R++ + G S+G A+I+F + A ++
Sbjct: 407 TLLAKNLPYKVTQDELKEVFED---AVEIRLVSK--DGKSKGIAYIEFKTEADAEKTLEE 461
Query: 348 IGDDGLVVDGRKLFFEYSSK 367
G +DGR + Y+ +
Sbjct: 462 --KQGTEIDGRSISLYYTGE 479
Score = 78 (32.5 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 24/85 (28%), Positives = 43/85 (50%)
Query: 286 SGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMM 345
S T+V+ L+ TEE L ++ + ++V + +N G S+G+AFI+F S A+ +
Sbjct: 498 SKTLVLSNLAYSATEETLQEVFEK---ATFIKVPQNQN-GKSKGYAFIEFASFEDAKEAL 553
Query: 346 DRIGDDGLVVDGRKLFFEYSSKPTG 370
+ ++GR + E P G
Sbjct: 554 NSCNKRE--IEGRAIRLELQG-PRG 575
>UNIPROTKB|I3L5X7 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
Uniprot:I3L5X7
Length = 156
Score = 138 (53.6 bits), Expect = 3.6e-08, P = 3.6e-08
Identities = 35/83 (42%), Positives = 50/83 (60%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
L V GL+ DE+ L FS PI ++ +V+D+ T SRGF F+ F + E AS A+ A
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRAM 67
Query: 510 NGTTLEKNGQILRVAYA-KSILG 531
NG +L+ G+ +RV +A KS G
Sbjct: 68 NGESLD--GRQIRVDHAGKSARG 88
Score = 123 (48.4 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 31/92 (33%), Positives = 50/92 (54%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
G + V GL+ T E+ L + +GP+ V V+K+R + SRGF FI F + A M
Sbjct: 6 GKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMR 65
Query: 347 RIGDDGLVVDGRKLFFEYSSKPTGGS-GGHYG 377
+ + L DGR++ +++ K G+ GG +G
Sbjct: 66 AMNGESL--DGRQIRVDHAGKSARGTRGGAFG 95
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 138 (53.6 bits), Expect = 3.6e-08, P = 3.6e-08
Identities = 32/99 (32%), Positives = 56/99 (56%)
Query: 283 VAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAAR 342
++ G + + GL+ T EE L Q+ +++G + V V+K+R + SRGF F+ F + A+
Sbjct: 1 MSDEGKLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAK 60
Query: 343 AMMDRIGDDGLVVDGRKLFFEYSSKPTGGS-GGHYGQES 380
M + +G VDGR++ + + K +G GG+ G S
Sbjct: 61 DAM--MAMNGKAVDGRQIRVDQAGKSSGDRRGGYRGGSS 97
Score = 122 (48.0 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 32/85 (37%), Positives = 49/85 (57%)
Query: 442 SDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVED 501
SD G L + GL+ +EE L FSK+ I ++ +V+D+ T SRGF F+ F + +D
Sbjct: 2 SDEGK---LFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDD 58
Query: 502 ASKALEATNGTTLEKNGQILRVAYA 526
A A+ A NG ++ G+ +RV A
Sbjct: 59 AKDAMMAMNGKAVD--GRQIRVDQA 81
>FB|FBgn0264270 [details] [associations]
symbol:Sxl "Sex lethal" species:7227 "Drosophila
melanogaster" [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=NAS;TAS] [GO:0019099 "female germ-line sex
determination" evidence=TAS] [GO:0007549 "dosage compensation"
evidence=NAS;TAS] [GO:0019101 "female somatic sex determination"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008187 "poly-pyrimidine tract binding" evidence=IDA]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=TAS] [GO:0007541 "sex determination, primary response to
X:A ratio" evidence=NAS;TAS] [GO:0048477 "oogenesis" evidence=TAS]
[GO:0030237 "female sex determination" evidence=NAS] [GO:0007131
"reciprocal meiotic recombination" evidence=TAS] [GO:0018993
"somatic sex determination" evidence=NAS;TAS] [GO:0003729 "mRNA
binding" evidence=ISS;TAS] [GO:0007530 "sex determination"
evidence=NAS;TAS] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0007281 "germ cell development" evidence=TAS] [GO:0007548 "sex
differentiation" evidence=NAS;TAS] [GO:0017148 "negative regulation
of translation" evidence=IMP;IDA;NAS;TAS] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA;TAS] [GO:0000900 "translation repressor
activity, nucleic acid binding" evidence=TAS] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=TAS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0007224 "smoothened signaling pathway"
evidence=IDA] [GO:0008083 "growth factor activity" evidence=IDA]
[GO:0007446 "imaginal disc growth" evidence=IMP] [GO:0009994
"oocyte differentiation" evidence=IDA] [GO:0043234 "protein
complex" evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006546
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0043234 GO:GO:0008266
GO:GO:0006355 GO:GO:0000166 EMBL:AE014298 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0048027 GO:GO:0003730 GO:GO:0007281
GO:GO:0008083 GO:GO:0007548 GO:GO:0007224 GO:GO:0007131
GO:GO:0009994 GO:GO:0000900 GO:GO:0048025 GO:GO:0019099
GO:GO:0000380 GO:GO:0007541 GO:GO:0007446 GO:GO:0007549
GO:GO:0019101 GeneTree:ENSGT00560000077064 EMBL:M23635 EMBL:M23636
EMBL:M59447 EMBL:M59448 EMBL:BT003583 EMBL:BT099922 EMBL:BT100240
EMBL:BT120392 EMBL:S88324 EMBL:D84425 PIR:A31639 PIR:A39725
RefSeq:NP_001027062.1 RefSeq:NP_001027063.1 RefSeq:NP_001027064.1
RefSeq:NP_001027065.1 RefSeq:NP_001027066.1 RefSeq:NP_001162686.1
RefSeq:NP_001162687.1 RefSeq:NP_001162688.1 RefSeq:NP_001162689.1
RefSeq:NP_001162690.1 RefSeq:NP_001162691.1 RefSeq:NP_001245559.1
RefSeq:NP_524791.3 RefSeq:NP_727160.2 RefSeq:NP_727161.2
RefSeq:NP_727162.2 RefSeq:NP_727163.2 RefSeq:NP_727164.2
RefSeq:NP_727165.2 RefSeq:NP_727166.2 RefSeq:NP_727167.2
RefSeq:NP_727168.1 UniGene:Dm.4502 PDB:1B7F PDB:1SXL PDB:2SXL
PDB:3SXL PDBsum:1B7F PDBsum:1SXL PDBsum:2SXL PDBsum:3SXL
ProteinModelPortal:P19339 SMR:P19339 IntAct:P19339 MINT:MINT-276991
STRING:P19339 PaxDb:P19339 PRIDE:P19339 EnsemblMetazoa:FBtr0331255
EnsemblMetazoa:FBtr0331262 EnsemblMetazoa:FBtr0331268
GeneID:3772180 KEGG:dme:Dmel_CG18350 CTD:3772180
FlyBase:FBgn0003659 eggNOG:NOG249299 InParanoid:P19339 OMA:HRDGAME
OrthoDB:EOG4F4QSS EvolutionaryTrace:P19339 NextBio:852740
Bgee:P19339 GermOnline:CG18350 TIGRFAMs:TIGR01659 Uniprot:P19339
Length = 354
Score = 108 (43.1 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 27/90 (30%), Positives = 50/90 (55%)
Query: 284 APSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPS-VGAAR 342
A + ++V L Q T+ +LY + GP+ R++++ +G S G+AF+DF S + + R
Sbjct: 122 ASNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQR 181
Query: 343 AMMDRIGDDGLVVDGRKLFFEYSSKPTGGS 372
A+ +G+ V ++L Y+ +P G S
Sbjct: 182 AIKVL---NGITVRNKRLKVSYA-RPGGES 207
Score = 98 (39.6 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 29/92 (31%), Positives = 42/92 (45%)
Query: 436 PLGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLH 495
P G+ DT L V L ++ L F K+ I ++RDK T RG AF+
Sbjct: 203 PGGESIKDTN----LYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVR 258
Query: 496 FHSVEDASKALEATNGTTLEKNGQILRVAYAK 527
++ E+A +A+ A N E Q L V A+
Sbjct: 259 YNKREEAQEAISALNNVIPEGGSQPLSVRLAE 290
>UNIPROTKB|G3MYJ0 [details] [associations]
symbol:G3MYJ0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000064073 Uniprot:G3MYJ0
Length = 625
Score = 162 (62.1 bits), Expect = 3.9e-08, P = 3.9e-08
Identities = 40/102 (39%), Positives = 59/102 (57%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
PS T+ VKGLS+ TTEE L + G +R R++ +R +G S+GF F+DF S A+A
Sbjct: 485 PSKTLFVKGLSEDTTEETLKESFD--GSIR-ARIVTDRETGSSKGFGFVDFNSEEDAKAA 541
Query: 345 MDRIGDDGLVVDGRKLFFEYSS-KPTGGSGGHYGQESAMGAR 385
+ + +DG +DG K+ +++ K GG GG G G R
Sbjct: 542 KEAM-EDG-EIDGNKVTLDWAKPKGEGGFGGRGGGRGGFGGR 581
Score = 126 (49.4 bits), Expect = 0.00031, P = 0.00031
Identities = 73/268 (27%), Positives = 114/268 (42%)
Query: 288 TIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDR 347
T++ K L K T+++L ++ + +R++ + G S+G A+I+F + A ++
Sbjct: 316 TLLAKNLPYKVTQDELKEVFED---AVEIRLVSK--DGKSKGIAYIEFKTEADAEKTLEE 370
Query: 348 IGDDGLVVD--GRKLFFEYSSKPTGGSGGHYGQESAM----GARHSNHKSTIP--CDWMC 399
G +D G K S GG + ES +S + T+ +
Sbjct: 371 --KQGTEIDYTGEK---GQSQDHRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKAT 425
Query: 400 TICGCVNFARRTSCFQCNE-ARTDDAPPAEMNSSNP-------IPL---GKKGSDTG--- 445
I N ++ + E A +DA A +NS N I L G +GS
Sbjct: 426 HIKVPQNQNGKSKGYAFIEFASFEDAKEA-LNSCNKREIEGRAIRLELQGPRGSPNARSQ 484
Query: 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKA 505
P+ L V+GL E EE L+ F I+ R+V D+ T S+GF F+ F+S EDA A
Sbjct: 485 PSKTLFVKGLSEDTTEETLKESFD--GSIR-ARIVTDRETGSSKGFGFVDFNSEEDAKAA 541
Query: 506 LEATNGTTLEKNGQILRVAYAKSILGPG 533
EA ++ N L A K G G
Sbjct: 542 KEAMEDGEIDGNKVTLDWAKPKGEGGFG 569
>UNIPROTKB|G3MXT4 [details] [associations]
symbol:G3MXT4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000065413 Uniprot:G3MXT4
Length = 630
Score = 162 (62.1 bits), Expect = 4.0e-08, P = 4.0e-08
Identities = 40/102 (39%), Positives = 59/102 (57%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
PS T+ VKGLS+ TTEE L + G +R R++ +R +G S+GF F+DF S A+A
Sbjct: 490 PSKTLFVKGLSEDTTEETLKESFD--GSIR-ARIVTDRETGSSKGFGFVDFNSEEDAKAA 546
Query: 345 MDRIGDDGLVVDGRKLFFEYSS-KPTGGSGGHYGQESAMGAR 385
+ + +DG +DG K+ +++ K GG GG G G R
Sbjct: 547 KEAM-EDG-EIDGNKVTLDWAKPKGEGGFGGRGGGRGGFGGR 586
Score = 126 (49.4 bits), Expect = 0.00031, P = 0.00031
Identities = 73/268 (27%), Positives = 114/268 (42%)
Query: 288 TIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDR 347
T++ K L K T+++L ++ + +R++ + G S+G A+I+F + A ++
Sbjct: 321 TLLAKNLPYKVTQDELKEVFED---AVEIRLVSK--DGKSKGIAYIEFKTEADAEKTLEE 375
Query: 348 IGDDGLVVD--GRKLFFEYSSKPTGGSGGHYGQESAM----GARHSNHKSTIP--CDWMC 399
G +D G K S GG + ES +S + T+ +
Sbjct: 376 --KQGTEIDYTGEK---GQSQDHRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKAT 430
Query: 400 TICGCVNFARRTSCFQCNE-ARTDDAPPAEMNSSNP-------IPL---GKKGSDTG--- 445
I N ++ + E A +DA A +NS N I L G +GS
Sbjct: 431 HIKVPQNQNGKSKGYAFIEFASFEDAKEA-LNSCNKREIEGRAIRLELQGPRGSPNARSQ 489
Query: 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKA 505
P+ L V+GL E EE L+ F I+ R+V D+ T S+GF F+ F+S EDA A
Sbjct: 490 PSKTLFVKGLSEDTTEETLKESFD--GSIR-ARIVTDRETGSSKGFGFVDFNSEEDAKAA 546
Query: 506 LEATNGTTLEKNGQILRVAYAKSILGPG 533
EA ++ N L A K G G
Sbjct: 547 KEAMEDGEIDGNKVTLDWAKPKGEGGFG 574
>UNIPROTKB|G3X7M4 [details] [associations]
symbol:G3X7M4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000038502 OMA:ENAMEIR Uniprot:G3X7M4
Length = 630
Score = 162 (62.1 bits), Expect = 4.0e-08, P = 4.0e-08
Identities = 40/102 (39%), Positives = 59/102 (57%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
PS T+ VKGLS+ TTEE L + G +R R++ +R +G S+GF F+DF S A+A
Sbjct: 490 PSKTLFVKGLSEDTTEETLKESFD--GSIR-ARIVTDRETGSSKGFGFVDFNSEEDAKAA 546
Query: 345 MDRIGDDGLVVDGRKLFFEYSS-KPTGGSGGHYGQESAMGAR 385
+ + +DG +DG K+ +++ K GG GG G G R
Sbjct: 547 KEAM-EDG-EIDGNKVTLDWAKPKGEGGFGGRGGGRGGFGGR 586
Score = 126 (49.4 bits), Expect = 0.00031, P = 0.00031
Identities = 73/268 (27%), Positives = 114/268 (42%)
Query: 288 TIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDR 347
T++ K L K T+++L ++ + +R++ + G S+G A+I+F + A ++
Sbjct: 321 TLLAKNLPYKVTQDELKEVFED---AVEIRLVSK--DGKSKGIAYIEFKTEADAEKTLEE 375
Query: 348 IGDDGLVVD--GRKLFFEYSSKPTGGSGGHYGQESAM----GARHSNHKSTIP--CDWMC 399
G +D G K S GG + ES +S + T+ +
Sbjct: 376 --KQGTEIDYTGEK---GQSQDHRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKAT 430
Query: 400 TICGCVNFARRTSCFQCNE-ARTDDAPPAEMNSSNP-------IPL---GKKGSDTG--- 445
I N ++ + E A +DA A +NS N I L G +GS
Sbjct: 431 HIKVPQNQNGKSKGYAFIEFASFEDAKEA-LNSCNKREIEGRAIRLELQGPRGSPNARSQ 489
Query: 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKA 505
P+ L V+GL E EE L+ F I+ R+V D+ T S+GF F+ F+S EDA A
Sbjct: 490 PSKTLFVKGLSEDTTEETLKESFD--GSIR-ARIVTDRETGSSKGFGFVDFNSEEDAKAA 546
Query: 506 LEATNGTTLEKNGQILRVAYAKSILGPG 533
EA ++ N L A K G G
Sbjct: 547 KEAMEDGEIDGNKVTLDWAKPKGEGGFG 574
>MGI|MGI:1099460 [details] [associations]
symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
[GO:0006950 "response to stress" evidence=IEA] [GO:0009409
"response to cold" evidence=IDA] [GO:0015934 "large ribosomal
subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
[GO:0043023 "ribosomal large subunit binding" evidence=IPI]
[GO:0045727 "positive regulation of translation" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
GermOnline:ENSMUSG00000031167 Uniprot:O89086
Length = 153
Score = 137 (53.3 bits), Expect = 4.6e-08, P = 4.6e-08
Identities = 35/83 (42%), Positives = 50/83 (60%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
L V GL+ DE+ L FS PI ++ +V+D+ T SRGF F+ F + E AS A+ A
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAM 67
Query: 510 NGTTLEKNGQILRVAYA-KSILG 531
NG +L+ G+ +RV +A KS G
Sbjct: 68 NGESLD--GRQIRVDHAGKSARG 88
Score = 126 (49.4 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 32/92 (34%), Positives = 50/92 (54%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
G + V GL+ T E+ L + +GP+ V V+K+R + SRGF FI F + A M
Sbjct: 6 GKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMR 65
Query: 347 RIGDDGLVVDGRKLFFEYSSKPTGGS-GGHYG 377
+ + L DGR++ +++ K GS GG +G
Sbjct: 66 AMNGESL--DGRQIRVDHAGKSARGSRGGAFG 95
>UNIPROTKB|G3V6P6 [details] [associations]
symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
subunit binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
Uniprot:G3V6P6
Length = 156
Score = 137 (53.3 bits), Expect = 4.6e-08, P = 4.6e-08
Identities = 35/83 (42%), Positives = 50/83 (60%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
L V GL+ DE+ L FS PI ++ +V+D+ T SRGF F+ F + E AS A+ A
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAM 67
Query: 510 NGTTLEKNGQILRVAYA-KSILG 531
NG +L+ G+ +RV +A KS G
Sbjct: 68 NGESLD--GRQIRVDHAGKSARG 88
Score = 123 (48.4 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 31/92 (33%), Positives = 50/92 (54%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
G + V GL+ T E+ L + +GP+ V V+K+R + SRGF FI F + A M
Sbjct: 6 GKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMR 65
Query: 347 RIGDDGLVVDGRKLFFEYSSKPTGGS-GGHYG 377
+ + L DGR++ +++ K G+ GG +G
Sbjct: 66 AMNGESL--DGRQIRVDHAGKSARGTRGGAFG 95
>MGI|MGI:97286 [details] [associations]
symbol:Ncl "nucleolin" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=ISO;IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005938
"cell cortex" evidence=ISO] [GO:0008022 "protein C-terminus
binding" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0042162 "telomeric DNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:97286 GO:GO:0005938 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0001525
GO:GO:0003723 GO:GO:0030529 GO:GO:0042162 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691
HOGENOM:HOG000113885 OMA:KERDTRT OrthoDB:EOG45MN5J ChiTaRS:NCL
EMBL:X07699 EMBL:AF318184 EMBL:AK050958 EMBL:AK083307 EMBL:AK144894
EMBL:AK161706 EMBL:AK163275 EMBL:BC005460 EMBL:M22089
IPI:IPI00317794 PIR:A29958 RefSeq:NP_035010.3 UniGene:Mm.154378
UniGene:Mm.474153 ProteinModelPortal:P09405 SMR:P09405
IntAct:P09405 STRING:P09405 PhosphoSite:P09405
REPRODUCTION-2DPAGE:P09405 PaxDb:P09405 PRIDE:P09405
Ensembl:ENSMUST00000027438 GeneID:17975 KEGG:mmu:17975
UCSC:uc007bvl.1 InParanoid:P09405 NextBio:292933 PMAP-CutDB:P09405
Bgee:P09405 CleanEx:MM_NCL Genevestigator:P09405
GermOnline:ENSMUSG00000026234 Uniprot:P09405
Length = 707
Score = 162 (62.1 bits), Expect = 4.7e-08, P = 4.7e-08
Identities = 40/102 (39%), Positives = 59/102 (57%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
PS T+ VKGLS+ TTEE L + G +R R++ +R +G S+GF F+DF S A+A
Sbjct: 567 PSKTLFVKGLSEDTTEETLKESFE--GSVR-ARIVTDRETGSSKGFGFVDFNSEEDAKAA 623
Query: 345 MDRIGDDGLVVDGRKLFFEYSS-KPTGGSGGHYGQESAMGAR 385
+ + +DG +DG K+ +++ K GG GG G G R
Sbjct: 624 KEAM-EDG-EIDGNKVTLDWAKPKGEGGFGGRGGGRGGFGGR 663
Score = 151 (58.2 bits), Expect = 7.3e-07, P = 7.3e-07
Identities = 73/272 (26%), Positives = 122/272 (44%)
Query: 283 VAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAAR 342
V + T++ K LS TE++L ++ + +R++ + G S+G A+I+F S A
Sbjct: 391 VRAARTLLAKNLSFNITEDELKEVFED---AMEIRLVSQ--DGKSKGIAYIEFKSEADAE 445
Query: 343 AMMDRIGDDGLVVDGRKLFFEYSSKP------TGGSGGHYGQESAM---GARHSNHKSTI 393
++ G +DGR + Y+ + TG + G+ + +S K T+
Sbjct: 446 KNLEE--KQGAEIDGRSVSLYYTGEKGQRQERTGKTSTWSGESKTLVLSNLSYSATKETL 503
Query: 394 P--CDWMCTICGCVNFARRTSCFQCNE-ARTDDAPPAEMNSSNPIPL-GK------KGSD 443
+ I N + + E A +DA A +NS N + + G+ +GS+
Sbjct: 504 EEVFEKATFIKVPQNPHGKPKGYAFIEFASFEDAKEA-LNSCNKMEIEGRTIRLELQGSN 562
Query: 444 TG--PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVED 501
+ P+ L V+GL E EE L+ F ++ R+V D+ T S+GF F+ F+S ED
Sbjct: 563 SRSQPSKTLFVKGLSEDTTEETLKESFE--GSVR-ARIVTDRETGSSKGFGFVDFNSEED 619
Query: 502 ASKALEATNGTTLEKNGQILRVAYAKSILGPG 533
A A EA ++ N L A K G G
Sbjct: 620 AKAAKEAMEDGEIDGNKVTLDWAKPKGEGGFG 651
>RGD|3153 [details] [associations]
symbol:Ncl "nucleolin" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005938 "cell cortex" evidence=ISO] [GO:0008022
"protein C-terminus binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:3153 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
OrthoDB:EOG45MN5J EMBL:M55022 EMBL:M55015 EMBL:M55017 EMBL:M55020
EMBL:M22090 IPI:IPI00882501 PIR:JH0148 UniGene:Rn.144561
UniGene:Rn.7735 ProteinModelPortal:P13383 SMR:P13383 IntAct:P13383
STRING:P13383 PhosphoSite:P13383 PRIDE:P13383 UCSC:RGD:3153
InParanoid:P13383 ArrayExpress:P13383 Genevestigator:P13383
GermOnline:ENSRNOG00000018273 Uniprot:P13383
Length = 713
Score = 162 (62.1 bits), Expect = 4.8e-08, P = 4.8e-08
Identities = 40/102 (39%), Positives = 59/102 (57%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
PS T+ VKGLS+ TTEE L + G +R R++ +R +G S+GF F+DF S A+A
Sbjct: 573 PSKTLFVKGLSEDTTEETLKESFE--GSVR-ARIVTDRETGSSKGFGFVDFNSEEDAKAA 629
Query: 345 MDRIGDDGLVVDGRKLFFEYSS-KPTGGSGGHYGQESAMGAR 385
+ + +DG +DG K+ +++ K GG GG G G R
Sbjct: 630 KEAM-EDG-EIDGNKVTLDWAKPKGEGGFGGRGGGRGGFGGR 669
Score = 115 (45.5 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 34/98 (34%), Positives = 48/98 (48%)
Query: 436 PLGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLH 495
P G + + P+ L V+GL E EE L+ F ++ R+V D+ T S+GF F+
Sbjct: 563 PRGSPNARSQPSKTLFVKGLSEDTTEETLKESFE--GSVR-ARIVTDRETGSSKGFGFVD 619
Query: 496 FHSVEDASKALEATNGTTLEKNGQILRVAYAKSILGPG 533
F+S EDA A EA ++ N L A K G G
Sbjct: 620 FNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGFG 657
Score = 98 (39.6 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 30/86 (34%), Positives = 45/86 (52%)
Query: 438 GKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFH 497
GK + +G + LV+ L A EE L+ F K IK + K S+G+AF+ F
Sbjct: 479 GKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNPHGK----SKGYAFIEFA 534
Query: 498 SVEDASKALEATNGTTLEKNGQILRV 523
S EDA +AL + N +E G+ +R+
Sbjct: 535 SFEDAKEALNSCNKMEIE--GRTIRL 558
Score = 81 (33.6 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 22/85 (25%), Positives = 43/85 (50%)
Query: 283 VAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAAR 342
V + T++ K LS TE++L ++ + +R++ + G S+G A+I+F S A
Sbjct: 393 VRAARTLLAKNLSFNITEDELKEVFED---AVEIRLVSQ--DGRSKGIAYIEFKSEADAE 447
Query: 343 AMMDRIGDDGLVVDGRKLFFEYSSK 367
++ G +DGR + Y+ +
Sbjct: 448 KNLEE--KQGAEIDGRSVSLYYTGE 470
Score = 78 (32.5 bits), Expect = 5.3e-06, Sum P(2) = 5.3e-06
Identities = 24/85 (28%), Positives = 42/85 (49%)
Query: 286 SGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMM 345
S T+V+ LS TEE L ++ + ++V + G S+G+AFI+F S A+ +
Sbjct: 488 SKTLVLSNLSYSATEETLQEVFEK---ATFIKV-PQNPHGKSKGYAFIEFASFEDAKEAL 543
Query: 346 DRIGDDGLVVDGRKLFFEYSSKPTG 370
+ + ++GR + E P G
Sbjct: 544 NSCNK--MEIEGRTIRLELQG-PRG 565
>UNIPROTKB|P08199 [details] [associations]
symbol:NCL "Nucleolin" species:10036 "Mesocricetus auratus"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 EMBL:M15825
PIR:A27441 PDB:1FJ7 PDB:1FJC PDB:1FJE PDB:1RKJ PDBsum:1FJ7
PDBsum:1FJC PDBsum:1FJE PDBsum:1RKJ ProteinModelPortal:P08199
SMR:P08199 PRIDE:P08199 EvolutionaryTrace:P08199 Uniprot:P08199
Length = 714
Score = 162 (62.1 bits), Expect = 4.8e-08, P = 4.8e-08
Identities = 40/102 (39%), Positives = 59/102 (57%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
PS T+ VKGLS+ TTEE L + G +R R++ +R +G S+GF F+DF S A+A
Sbjct: 570 PSKTLFVKGLSEDTTEETLKESFE--GSVR-ARIVTDRETGSSKGFGFVDFNSEEDAKAA 626
Query: 345 MDRIGDDGLVVDGRKLFFEYSS-KPTGGSGGHYGQESAMGAR 385
+ + +DG +DG K+ +++ K GG GG G G R
Sbjct: 627 KEAM-EDG-EIDGNKVTLDWAKPKGEGGFGGRGGGRGGFGGR 666
Score = 115 (45.5 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 34/98 (34%), Positives = 48/98 (48%)
Query: 436 PLGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLH 495
P G + + P+ L V+GL E EE L+ F ++ R+V D+ T S+GF F+
Sbjct: 560 PRGSPNARSQPSKTLFVKGLSEDTTEETLKESFE--GSVR-ARIVTDRETGSSKGFGFVD 616
Query: 496 FHSVEDASKALEATNGTTLEKNGQILRVAYAKSILGPG 533
F+S EDA A EA ++ N L A K G G
Sbjct: 617 FNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGFG 654
Score = 99 (39.9 bits), Expect = 8.0e-05, Sum P(2) = 8.0e-05
Identities = 30/86 (34%), Positives = 46/86 (53%)
Query: 438 GKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFH 497
GK + +G + LV+ L A EE L+ F K IK + + K S+G+AF+ F
Sbjct: 476 GKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQQGK----SKGYAFIEFA 531
Query: 498 SVEDASKALEATNGTTLEKNGQILRV 523
S EDA +AL + N +E G+ +R+
Sbjct: 532 SFEDAKEALNSCNKMEIE--GRTIRL 555
Score = 83 (34.3 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 22/85 (25%), Positives = 43/85 (50%)
Query: 283 VAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAAR 342
V + T++ K LS TE++L ++ + +R++ + G S+G A+I+F S A
Sbjct: 390 VRAARTLLAKNLSFNITEDELKEVFED---ALEIRLVSQ--DGKSKGIAYIEFKSEADAE 444
Query: 343 AMMDRIGDDGLVVDGRKLFFEYSSK 367
++ G +DGR + Y+ +
Sbjct: 445 KNLEE--KQGAEIDGRSVSLYYTGE 467
Score = 81 (33.6 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 24/85 (28%), Positives = 42/85 (49%)
Query: 286 SGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMM 345
S T+V+ LS TEE L ++ + ++V + G S+G+AFI+F S A+ +
Sbjct: 485 SKTLVLSNLSYSATEETLQEVFEK---ATFIKV-PQNQQGKSKGYAFIEFASFEDAKEAL 540
Query: 346 DRIGDDGLVVDGRKLFFEYSSKPTG 370
+ + ++GR + E P G
Sbjct: 541 NSCNK--MEIEGRTIRLELQG-PRG 562
>UNIPROTKB|Q5U328 [details] [associations]
symbol:Ncl "Nucleolin, isoform CRA_c" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:3153 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 HOGENOM:HOG000113885
UniGene:Rn.144561 UniGene:Rn.7735 EMBL:CH474004 OMA:ENAMEIR
EMBL:BC085751 IPI:IPI00231827 RefSeq:NP_036881.2 SMR:Q5U328
STRING:Q5U328 Ensembl:ENSRNOT00000024712 GeneID:25135
KEGG:rno:25135 InParanoid:Q5U328 NextBio:605553
Genevestigator:Q5U328 Uniprot:Q5U328
Length = 714
Score = 162 (62.1 bits), Expect = 4.8e-08, P = 4.8e-08
Identities = 40/102 (39%), Positives = 59/102 (57%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
PS T+ VKGLS+ TTEE L + G +R R++ +R +G S+GF F+DF S A+A
Sbjct: 574 PSKTLFVKGLSEDTTEETLKESFE--GSVR-ARIVTDRETGSSKGFGFVDFNSEEDAKAA 630
Query: 345 MDRIGDDGLVVDGRKLFFEYSS-KPTGGSGGHYGQESAMGAR 385
+ + +DG +DG K+ +++ K GG GG G G R
Sbjct: 631 KEAM-EDG-EIDGNKVTLDWAKPKGEGGFGGRGGGRGGFGGR 670
Score = 115 (45.5 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 34/98 (34%), Positives = 48/98 (48%)
Query: 436 PLGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLH 495
P G + + P+ L V+GL E EE L+ F ++ R+V D+ T S+GF F+
Sbjct: 564 PRGSPNARSQPSKTLFVKGLSEDTTEETLKESFE--GSVR-ARIVTDRETGSSKGFGFVD 620
Query: 496 FHSVEDASKALEATNGTTLEKNGQILRVAYAKSILGPG 533
F+S EDA A EA ++ N L A K G G
Sbjct: 621 FNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGFG 658
Score = 98 (39.6 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 30/86 (34%), Positives = 45/86 (52%)
Query: 438 GKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFH 497
GK + +G + LV+ L A EE L+ F K IK + K S+G+AF+ F
Sbjct: 480 GKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNPHGK----SKGYAFIEFA 535
Query: 498 SVEDASKALEATNGTTLEKNGQILRV 523
S EDA +AL + N +E G+ +R+
Sbjct: 536 SFEDAKEALNSCNKMEIE--GRTIRL 559
Score = 81 (33.6 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 22/85 (25%), Positives = 43/85 (50%)
Query: 283 VAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAAR 342
V + T++ K LS TE++L ++ + +R++ + G S+G A+I+F S A
Sbjct: 394 VRAARTLLAKNLSFNITEDELKEVFED---AVEIRLVSQ--DGRSKGIAYIEFKSEADAE 448
Query: 343 AMMDRIGDDGLVVDGRKLFFEYSSK 367
++ G +DGR + Y+ +
Sbjct: 449 KNLEE--KQGAEIDGRSVSLYYTGE 471
Score = 78 (32.5 bits), Expect = 5.3e-06, Sum P(2) = 5.3e-06
Identities = 24/85 (28%), Positives = 42/85 (49%)
Query: 286 SGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMM 345
S T+V+ LS TEE L ++ + ++V + G S+G+AFI+F S A+ +
Sbjct: 489 SKTLVLSNLSYSATEETLQEVFEK---ATFIKV-PQNPHGKSKGYAFIEFASFEDAKEAL 544
Query: 346 DRIGDDGLVVDGRKLFFEYSSKPTG 370
+ + ++GR + E P G
Sbjct: 545 NSCNK--MEIEGRTIRLELQG-PRG 566
>UNIPROTKB|E1B8K6 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 EMBL:DAAA02006195
IPI:IPI00971535 RefSeq:NP_001193589.1 UniGene:Bt.107977
UniGene:Bt.108558 UniGene:Bt.7403 UniGene:Bt.79166
ProteinModelPortal:E1B8K6 IntAct:E1B8K6 PRIDE:E1B8K6
Ensembl:ENSBTAT00000021529 GeneID:497013 KEGG:bta:497013
OMA:RLEYSQS NextBio:20865826 Uniprot:E1B8K6
Length = 720
Score = 162 (62.1 bits), Expect = 4.9e-08, P = 4.9e-08
Identities = 40/102 (39%), Positives = 59/102 (57%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
PS T+ VKGLS+ TTEE L + G +R R++ +R +G S+GF F+DF S A+A
Sbjct: 580 PSKTLFVKGLSEDTTEETLKESFD--GSIR-ARIVTDRETGSSKGFGFVDFNSEEDAKAA 636
Query: 345 MDRIGDDGLVVDGRKLFFEYSS-KPTGGSGGHYGQESAMGAR 385
+ + +DG +DG K+ +++ K GG GG G G R
Sbjct: 637 KEAM-EDG-EIDGNKVTLDWAKPKGEGGFGGRGGGRGGFGGR 676
Score = 116 (45.9 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 35/98 (35%), Positives = 48/98 (48%)
Query: 436 PLGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLH 495
P G + + P+ L V+GL E EE L+ F I+ R+V D+ T S+GF F+
Sbjct: 570 PRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSIR-ARIVTDRETGSSKGFGFVD 626
Query: 496 FHSVEDASKALEATNGTTLEKNGQILRVAYAKSILGPG 533
F+S EDA A EA ++ N L A K G G
Sbjct: 627 FNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGFG 664
Score = 101 (40.6 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 30/86 (34%), Positives = 44/86 (51%)
Query: 438 GKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFH 497
GK + +G + LV+ L A EE L+ F K IK V S+G+AF+ F
Sbjct: 486 GKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATHIK----VPQNQNGKSKGYAFIEFA 541
Query: 498 SVEDASKALEATNGTTLEKNGQILRV 523
S EDA +AL + N +E G+ +R+
Sbjct: 542 SFEDAKEALNSCNKREIE--GRAIRL 565
Score = 90 (36.7 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 26/85 (30%), Positives = 44/85 (51%)
Query: 286 SGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMM 345
S T+V+ LS TEE L ++ + H++V + +N G S+G+AFI+F S A+ +
Sbjct: 495 SKTLVLSNLSYSATEETLQEVFEK---ATHIKVPQNQN-GKSKGYAFIEFASFEDAKEAL 550
Query: 346 DRIGDDGLVVDGRKLFFEYSSKPTG 370
+ ++GR + E P G
Sbjct: 551 NSCNKRE--IEGRAIRLELQG-PRG 572
Score = 87 (35.7 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
Identities = 23/94 (24%), Positives = 48/94 (51%)
Query: 288 TIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDR 347
T++ K L K T+++L ++ + +R++ + G S+G A+I+F + A ++
Sbjct: 404 TLLAKNLPYKVTQDELKEVFED---AVEIRLVSK--DGKSKGIAYIEFKTEADAEKTLEE 458
Query: 348 IGDDGLVVDGRKLFFEYSSKPTGGSGGHYGQESA 381
G +DGR + Y+ + G S H G +++
Sbjct: 459 --KQGTEIDGRSISLYYTGEK-GQSQDHRGGKNS 489
>UNIPROTKB|F6RBQ9 [details] [associations]
symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
Length = 160
Score = 136 (52.9 bits), Expect = 5.8e-08, P = 5.8e-08
Identities = 35/83 (42%), Positives = 49/83 (59%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
L V GL+ DE L FS PI ++ +V+D+ T SRGF F+ F + E AS A+ A
Sbjct: 8 LFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRAM 67
Query: 510 NGTTLEKNGQILRVAYA-KSILG 531
NG +L+ G+ +RV +A KS G
Sbjct: 68 NGESLD--GRQIRVDHAGKSARG 88
Score = 124 (48.7 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 32/92 (34%), Positives = 49/92 (53%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
G + V GL+ T E L + +GP+ V V+K+R + SRGF FI F + A M
Sbjct: 6 GKLFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMR 65
Query: 347 RIGDDGLVVDGRKLFFEYSSKPTGGS-GGHYG 377
+ + L DGR++ +++ K GS GG +G
Sbjct: 66 AMNGESL--DGRQIRVDHAGKSARGSRGGAFG 95
>UNIPROTKB|P19338 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IPI] [GO:0001525 "angiogenesis" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0042162 "telomeric DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938
Pathway_Interaction_DB:telomerasepathway GO:GO:0005654
GO:GO:0005730 Pathway_Interaction_DB:aurora_b_pathway GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0003723 GO:GO:0030529
GO:GO:0042162 EMBL:AC017104 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K11294 CTD:4691 HOGENOM:HOG000113885 EMBL:M60858 EMBL:AK091742
IPI:IPI00604620 PIR:A35804 PIR:S53728 RefSeq:NP_005372.2
UniGene:Hs.79110 PDB:2FC8 PDB:2FC9 PDB:2KRR PDBsum:2FC8 PDBsum:2FC9
PDBsum:2KRR ProteinModelPortal:P19338 SMR:P19338 DIP:DIP-89N
IntAct:P19338 MINT:MINT-4999081 STRING:P19338 PhosphoSite:P19338
DMDM:90110781 DOSAC-COBS-2DPAGE:P19338 SWISS-2DPAGE:P19338
PaxDb:P19338 PRIDE:P19338 DNASU:4691 Ensembl:ENST00000322723
GeneID:4691 KEGG:hsa:4691 UCSC:uc002vru.3 GeneCards:GC02M232318
HGNC:HGNC:7667 HPA:CAB004210 HPA:HPA023981 MIM:164035
neXtProt:NX_P19338 PharmGKB:PA31469 InParanoid:P19338 OMA:KERDTRT
OrthoDB:EOG45MN5J PhylomeDB:P19338 ChiTaRS:NCL
EvolutionaryTrace:P19338 GenomeRNAi:4691 NextBio:18090
PMAP-CutDB:P19338 ArrayExpress:P19338 Bgee:P19338 CleanEx:HS_NCL
Genevestigator:P19338 GermOnline:ENSG00000115053 Uniprot:P19338
Length = 710
Score = 161 (61.7 bits), Expect = 6.1e-08, P = 6.1e-08
Identities = 40/102 (39%), Positives = 59/102 (57%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
PS T+ VKGLS+ TTEE L + G +R R++ +R +G S+GF F+DF S A+A
Sbjct: 570 PSKTLFVKGLSEDTTEETLKESFD--GSVR-ARIVTDRETGSSKGFGFVDFNSEEDAKAA 626
Query: 345 MDRIGDDGLVVDGRKLFFEYSS-KPTGGSGGHYGQESAMGAR 385
+ + +DG +DG K+ +++ K GG GG G G R
Sbjct: 627 KEAM-EDG-EIDGNKVTLDWAKPKGEGGFGGRGGGRGGFGGR 666
Score = 115 (45.5 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 34/98 (34%), Positives = 48/98 (48%)
Query: 436 PLGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLH 495
P G + + P+ L V+GL E EE L+ F ++ R+V D+ T S+GF F+
Sbjct: 560 PRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSVR-ARIVTDRETGSSKGFGFVD 616
Query: 496 FHSVEDASKALEATNGTTLEKNGQILRVAYAKSILGPG 533
F+S EDA A EA ++ N L A K G G
Sbjct: 617 FNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGFG 654
Score = 99 (39.9 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 30/86 (34%), Positives = 44/86 (51%)
Query: 438 GKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFH 497
GK + +G + LV+ L A EE L+ F K IK V S+G+AF+ F
Sbjct: 476 GKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFA 531
Query: 498 SVEDASKALEATNGTTLEKNGQILRV 523
S EDA +AL + N +E G+ +R+
Sbjct: 532 SFEDAKEALNSCNKREIE--GRAIRL 555
Score = 81 (33.6 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 25/85 (29%), Positives = 43/85 (50%)
Query: 286 SGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMM 345
S T+V+ LS TEE L ++ + ++V + +N G S+G+AFI+F S A+ +
Sbjct: 485 SKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNQN-GKSKGYAFIEFASFEDAKEAL 540
Query: 346 DRIGDDGLVVDGRKLFFEYSSKPTG 370
+ ++GR + E P G
Sbjct: 541 NSCNKRE--IEGRAIRLELQG-PRG 562
Score = 81 (33.6 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 24/106 (22%), Positives = 46/106 (43%)
Query: 288 TIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDR 347
T++ K L K T+++L ++ + +R++ + G S+G A+I+F + A +
Sbjct: 394 TLLAKNLPYKVTQDELKEVFED---AAEIRLVSK--DGKSKGIAYIEFKTEADAEKTFEE 448
Query: 348 IGDDGLVVDGRKLFFEYSSKPTGGSGGHYGQESAMGARHSNHKSTI 393
G +DGR + Y TG G + + S T+
Sbjct: 449 --KQGTEIDGRSISLYY----TGEKGQNQDYRGGKNSTWSGESKTL 488
>UNIPROTKB|Q9DDU8 [details] [associations]
symbol:TRA2B "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0000398 HSSP:Q9V535 GO:GO:0048026 GO:GO:0000381
HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 KO:K12897
OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 OMA:YDDREYY
EMBL:AADN02024287 EMBL:AF282244 IPI:IPI00571265 RefSeq:NP_990009.1
UniGene:Gga.4158 SMR:Q9DDU8 Ensembl:ENSGALT00000010555
GeneID:395403 KEGG:gga:395403 InParanoid:Q9DDU8 NextBio:20815487
Uniprot:Q9DDU8
Length = 289
Score = 156 (60.0 bits), Expect = 6.1e-08, Sum P(2) = 6.1e-08
Identities = 37/90 (41%), Positives = 56/90 (62%)
Query: 437 LGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHF 496
+G + ++ P L V GL Y E LR FSK+ PI D+ +V D+ + SRGFAF++F
Sbjct: 108 IGNR-ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYF 166
Query: 497 HSVEDASKALEATNGTTLEKNGQILRVAYA 526
+VEDA +A E NG +E +G+ +RV ++
Sbjct: 167 ENVEDAKEAKERANG--MELDGRRIRVDFS 194
Score = 139 (54.0 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 34/108 (31%), Positives = 64/108 (59%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
P+ + V GLS TTE DL ++ +++GP+ V ++ ++ S SRGFAF+ F +V A+
Sbjct: 116 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVEDAKEA 175
Query: 345 MDRIGDDGLVVDGRKLFFEYS--SKPTGGSGGHY-GQESAMGARHSNH 389
+R +G+ +DGR++ ++S +P + G Y G+ + +R ++
Sbjct: 176 KERA--NGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRRDY 221
Score = 39 (18.8 bits), Expect = 6.1e-08, Sum P(2) = 6.1e-08
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 71 QSRRRNYEEDYSLDRESRRH 90
+SR R+Y DY R S H
Sbjct: 80 RSRSRSYSRDYRR-RHSHSH 98
Score = 38 (18.4 bits), Expect = 7.7e-08, Sum P(2) = 7.7e-08
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 71 QSRRRNYEEDYSLDRESRR-HEKPYIDSYHEMDAY 104
+S RR+Y S R RR + Y Y ++
Sbjct: 62 RSSRRHYTRSRSRSRSHRRSRSRSYSRDYRRRHSH 96
>UNIPROTKB|Q4R4J7 [details] [associations]
symbol:NCL "Nucleolin" species:9541 "Macaca fascicularis"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 OrthoDB:EOG45MN5J
EMBL:AB169897 EMBL:AB168220 ProteinModelPortal:Q4R4J7 SMR:Q4R4J7
PRIDE:Q4R4J7 Uniprot:Q4R4J7
Length = 711
Score = 161 (61.7 bits), Expect = 6.1e-08, P = 6.1e-08
Identities = 40/102 (39%), Positives = 59/102 (57%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
PS T+ VKGLS+ TTEE L + G +R R++ +R +G S+GF F+DF S A+A
Sbjct: 571 PSKTLFVKGLSEDTTEETLKESFD--GSVR-ARIVTDRETGSSKGFGFVDFNSEEDAKAA 627
Query: 345 MDRIGDDGLVVDGRKLFFEYSS-KPTGGSGGHYGQESAMGAR 385
+ + +DG +DG K+ +++ K GG GG G G R
Sbjct: 628 KEAM-EDG-EIDGNKVTLDWAKPKGEGGFGGRGGGRGGFGGR 667
Score = 115 (45.5 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 34/98 (34%), Positives = 48/98 (48%)
Query: 436 PLGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLH 495
P G + + P+ L V+GL E EE L+ F ++ R+V D+ T S+GF F+
Sbjct: 561 PRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSVR-ARIVTDRETGSSKGFGFVD 617
Query: 496 FHSVEDASKALEATNGTTLEKNGQILRVAYAKSILGPG 533
F+S EDA A EA ++ N L A K G G
Sbjct: 618 FNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGFG 655
Score = 99 (39.9 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 30/86 (34%), Positives = 44/86 (51%)
Query: 438 GKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFH 497
GK + +G + LV+ L A EE L+ F K IK V S+G+AF+ F
Sbjct: 477 GKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFA 532
Query: 498 SVEDASKALEATNGTTLEKNGQILRV 523
S EDA +AL + N +E G+ +R+
Sbjct: 533 SFEDAKEALNSCNKREIE--GRAIRL 556
Score = 81 (33.6 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 25/85 (29%), Positives = 43/85 (50%)
Query: 286 SGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMM 345
S T+V+ LS TEE L ++ + ++V + +N G S+G+AFI+F S A+ +
Sbjct: 486 SKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNQN-GKSKGYAFIEFASFEDAKEAL 541
Query: 346 DRIGDDGLVVDGRKLFFEYSSKPTG 370
+ ++GR + E P G
Sbjct: 542 NSCNKRE--IEGRAIRLELQG-PRG 563
Score = 81 (33.6 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 24/106 (22%), Positives = 46/106 (43%)
Query: 288 TIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDR 347
T++ K L K T+++L ++ + +R++ + G S+G A+I+F + A +
Sbjct: 395 TLLAKNLPYKVTQDELKEVFED---AAEIRLVSK--DGKSKGIAYIEFKTEADAEKTFEE 449
Query: 348 IGDDGLVVDGRKLFFEYSSKPTGGSGGHYGQESAMGARHSNHKSTI 393
G +DGR + Y TG G + + S T+
Sbjct: 450 --KQGTEIDGRSISLYY----TGEKGQNQDYRGGKNSTWSGESKTL 489
>UNIPROTKB|Q5RF26 [details] [associations]
symbol:NCL "Nucleolin" species:9601 "Pongo abelii"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 KO:K11294 CTD:4691
EMBL:CR857335 RefSeq:NP_001127178.1 UniGene:Pab.18146
ProteinModelPortal:Q5RF26 SMR:Q5RF26 GeneID:100174230
KEGG:pon:100174230 InParanoid:Q5RF26 Uniprot:Q5RF26
Length = 712
Score = 161 (61.7 bits), Expect = 6.1e-08, P = 6.1e-08
Identities = 40/102 (39%), Positives = 59/102 (57%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
PS T+ VKGLS+ TTEE L + G +R R++ +R +G S+GF F+DF S A+A
Sbjct: 572 PSKTLFVKGLSEDTTEETLKESFD--GSVR-ARIVTDRETGSSKGFGFVDFNSEEDAKAA 628
Query: 345 MDRIGDDGLVVDGRKLFFEYSS-KPTGGSGGHYGQESAMGAR 385
+ + +DG +DG K+ +++ K GG GG G G R
Sbjct: 629 KEAM-EDG-EIDGNKVTLDWAKPKGEGGFGGRGGGRGGFGGR 668
Score = 115 (45.5 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 34/98 (34%), Positives = 48/98 (48%)
Query: 436 PLGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLH 495
P G + + P+ L V+GL E EE L+ F ++ R+V D+ T S+GF F+
Sbjct: 562 PRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSVR-ARIVTDRETGSSKGFGFVD 618
Query: 496 FHSVEDASKALEATNGTTLEKNGQILRVAYAKSILGPG 533
F+S EDA A EA ++ N L A K G G
Sbjct: 619 FNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGFG 656
Score = 99 (39.9 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 30/86 (34%), Positives = 44/86 (51%)
Query: 438 GKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFH 497
GK + +G + LV+ L A EE L+ F K IK V S+G+AF+ F
Sbjct: 478 GKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFA 533
Query: 498 SVEDASKALEATNGTTLEKNGQILRV 523
S EDA +AL + N +E G+ +R+
Sbjct: 534 SFEDAKEALNSCNKREIE--GRAIRL 557
Score = 81 (33.6 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 25/85 (29%), Positives = 43/85 (50%)
Query: 286 SGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMM 345
S T+V+ LS TEE L ++ + ++V + +N G S+G+AFI+F S A+ +
Sbjct: 487 SKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNQN-GKSKGYAFIEFASFEDAKEAL 542
Query: 346 DRIGDDGLVVDGRKLFFEYSSKPTG 370
+ ++GR + E P G
Sbjct: 543 NSCNKRE--IEGRAIRLELQG-PRG 564
Score = 81 (33.6 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 24/106 (22%), Positives = 46/106 (43%)
Query: 288 TIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDR 347
T++ K L K T+++L ++ + +R++ + G S+G A+I+F + A +
Sbjct: 396 TLLAKNLPYKVTQDELKEVFED---AAEIRLVSK--DGKSKGIAYIEFKTEADAEKTFEE 450
Query: 348 IGDDGLVVDGRKLFFEYSSKPTGGSGGHYGQESAMGARHSNHKSTI 393
G +DGR + Y TG G + + S T+
Sbjct: 451 --KQGTEIDGRSISLYY----TGEKGQNQDYRGGKNSTWSGESKTL 490
>UNIPROTKB|F1Q0B0 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008022
"protein C-terminus binding" evidence=IEA] [GO:0005938 "cell
cortex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0001525 "angiogenesis" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0030529 GO:GO:0042162
KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691 OMA:KERDTRT
EMBL:AAEX03014432 RefSeq:XP_850477.2 Ensembl:ENSCAFT00000017622
GeneID:608445 KEGG:cfa:608445 Uniprot:F1Q0B0
Length = 715
Score = 161 (61.7 bits), Expect = 6.2e-08, P = 6.2e-08
Identities = 40/102 (39%), Positives = 59/102 (57%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
PS T+ VKGLS+ TTEE L + G +R R++ +R +G S+GF F+DF S A+A
Sbjct: 575 PSKTLFVKGLSEDTTEETLKESFD--GSVR-ARIVTDRETGSSKGFGFVDFNSEEDAKAA 631
Query: 345 MDRIGDDGLVVDGRKLFFEYSS-KPTGGSGGHYGQESAMGAR 385
+ + +DG +DG K+ +++ K GG GG G G R
Sbjct: 632 KEAM-EDG-EIDGNKVTLDWAKPKGEGGFGGRGGGRGGFGGR 671
Score = 115 (45.5 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 34/98 (34%), Positives = 48/98 (48%)
Query: 436 PLGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLH 495
P G + + P+ L V+GL E EE L+ F ++ R+V D+ T S+GF F+
Sbjct: 565 PRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSVR-ARIVTDRETGSSKGFGFVD 621
Query: 496 FHSVEDASKALEATNGTTLEKNGQILRVAYAKSILGPG 533
F+S EDA A EA ++ N L A K G G
Sbjct: 622 FNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGFG 659
Score = 99 (39.9 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 30/86 (34%), Positives = 44/86 (51%)
Query: 438 GKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFH 497
GK + +G + LV+ L A EE L+ F K IK V S+G+AF+ F
Sbjct: 481 GKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFA 536
Query: 498 SVEDASKALEATNGTTLEKNGQILRV 523
S EDA +AL + N +E G+ +R+
Sbjct: 537 SFEDAKEALNSCNKREIE--GRAIRL 560
Score = 81 (33.6 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 25/85 (29%), Positives = 43/85 (50%)
Query: 286 SGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMM 345
S T+V+ LS TEE L ++ + ++V + +N G S+G+AFI+F S A+ +
Sbjct: 490 SKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNQN-GKSKGYAFIEFASFEDAKEAL 545
Query: 346 DRIGDDGLVVDGRKLFFEYSSKPTG 370
+ ++GR + E P G
Sbjct: 546 NSCNKRE--IEGRAIRLELQG-PRG 567
Score = 79 (32.9 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
Identities = 22/94 (23%), Positives = 47/94 (50%)
Query: 288 TIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDR 347
T++ K L K T+++L ++ + +R++ + G S+G A+I+F + A +
Sbjct: 399 TLLAKNLPYKVTQDELKEVFED---AVEIRLVSK--DGKSKGIAYIEFKTEADAEKTFEE 453
Query: 348 IGDDGLVVDGRKLFFEYSSKPTGGSGGHYGQESA 381
G +DGR + Y+ + G S + G +++
Sbjct: 454 --KQGTEIDGRSISLYYTGEK-GQSQDYRGGKNS 484
>UNIPROTKB|F1N3T3 [details] [associations]
symbol:F1N3T3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:DAAA02019525 IPI:IPI00709098
Ensembl:ENSBTAT00000014774 OMA:FGGYPCY Uniprot:F1N3T3
Length = 352
Score = 113 (44.8 bits), Expect = 6.8e-08, Sum P(2) = 6.8e-08
Identities = 32/84 (38%), Positives = 41/84 (48%)
Query: 289 IVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAA-RAMMDR 347
+ + GLS +TTEE L +WG L VI+ S SRGF F+ F SV AM R
Sbjct: 23 LFIGGLSSETTEESLKNYYQQWGELTDCVVIRGLASQKSRGFGFVTFSSVAEVDAAMAAR 82
Query: 348 IGD-DGLVVDGRKLFFEYSSKPTG 370
DG VVD ++ S+ G
Sbjct: 83 PHSIDGRVVDPKRAVSREKSEKQG 106
Score = 90 (36.7 bits), Expect = 6.8e-08, Sum P(2) = 6.8e-08
Identities = 27/87 (31%), Positives = 39/87 (44%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKAL--- 506
L V G+ E +E LR F K+ I + ++ D+ + RGF F+ F + K +
Sbjct: 114 LFVGGIKEDTEEHHLREYFEKYGKIDAIEIITDRQSGKKRGFGFVTFDDYDPVDKIMLQK 173
Query: 507 -EATNGTTLEKNGQILRVAYAKSILGP 532
A NG E G+ L K I GP
Sbjct: 174 YHAINGHRAEV-GKALSRQEMKEIQGP 199
>UNIPROTKB|E9PTI5 [details] [associations]
symbol:E9PTI5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 IPI:IPI01007589
Ensembl:ENSRNOT00000011480 Uniprot:E9PTI5
Length = 567
Score = 158 (60.7 bits), Expect = 9.1e-08, P = 9.1e-08
Identities = 39/102 (38%), Positives = 58/102 (56%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
PS T+ VKGLS+ TTEE L + G +R R++ +R +G S+GF F+DF S A+
Sbjct: 427 PSKTLFVKGLSEDTTEETLKESFE--GSVR-ARIVTDRETGSSKGFGFVDFNSEEDAKTA 483
Query: 345 MDRIGDDGLVVDGRKLFFEYSS-KPTGGSGGHYGQESAMGAR 385
+ + +DG +DG K+ +++ K GG GG G G R
Sbjct: 484 KEAM-EDG-EIDGNKVTLDWAKPKGKGGFGGRGGGRGGFGGR 523
Score = 115 (45.5 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 34/98 (34%), Positives = 48/98 (48%)
Query: 436 PLGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLH 495
P G + + P+ L V+GL E EE L+ F ++ R+V D+ T S+GF F+
Sbjct: 417 PRGSPNARSQPSKTLFVKGLSEDTTEETLKESFE--GSVR-ARIVTDRETGSSKGFGFVD 473
Query: 496 FHSVEDASKALEATNGTTLEKNGQILRVAYAKSILGPG 533
F+S EDA A EA ++ N L A K G G
Sbjct: 474 FNSEEDAKTAKEAMEDGEIDGNKVTLDWAKPKGKGGFG 511
Score = 98 (39.6 bits), Expect = 9.4e-05, Sum P(2) = 9.4e-05
Identities = 30/86 (34%), Positives = 45/86 (52%)
Query: 438 GKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFH 497
GK + +G + LV+ L A EE L+ F K IK + K S+G+AF+ F
Sbjct: 333 GKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNPHGK----SKGYAFIEFA 388
Query: 498 SVEDASKALEATNGTTLEKNGQILRV 523
S EDA +AL + N +E G+ +R+
Sbjct: 389 SFEDAKEALNSCNKMEIE--GRTIRL 412
Score = 81 (33.6 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 22/85 (25%), Positives = 43/85 (50%)
Query: 283 VAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAAR 342
V + T++ K LS TE++L ++ + +R++ + G S+G A+I+F S A
Sbjct: 247 VRAARTLLAKNLSFNITEDELKEVFED---AVEIRLVSQ--DGRSKGIAYIEFKSEADAE 301
Query: 343 AMMDRIGDDGLVVDGRKLFFEYSSK 367
++ G +DGR + Y+ +
Sbjct: 302 KNLEE--KQGAEIDGRSVSLYYTGE 324
Score = 78 (32.5 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 24/85 (28%), Positives = 42/85 (49%)
Query: 286 SGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMM 345
S T+V+ LS TEE L ++ + ++V + G S+G+AFI+F S A+ +
Sbjct: 342 SKTLVLSNLSYSATEETLQEVFEK---ATFIKV-PQNPHGKSKGYAFIEFASFEDAKEAL 397
Query: 346 DRIGDDGLVVDGRKLFFEYSSKPTG 370
+ + ++GR + E P G
Sbjct: 398 NSCNK--MEIEGRTIRLELQG-PRG 419
>UNIPROTKB|I3LBN9 [details] [associations]
symbol:TRA2B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048026 "positive regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0000398 GO:GO:0048026 GO:GO:0000381
GeneTree:ENSGT00700000104309 OMA:YDDREYY Ensembl:ENSSSCT00000025696
Uniprot:I3LBN9
Length = 280
Score = 152 (58.6 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 35/81 (43%), Positives = 51/81 (62%)
Query: 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKA 505
P L V GL Y E LR FSK+ PI D+ +V D+ + SRGFAF++F +V+DA +A
Sbjct: 108 PNCCLGVFGLSLYTTESDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEA 167
Query: 506 LEATNGTTLEKNGQILRVAYA 526
E NG +E +G+ +RV ++
Sbjct: 168 KERANG--MELDGRRIRVDFS 186
Score = 140 (54.3 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 34/108 (31%), Positives = 64/108 (59%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
P+ + V GLS TTE DL ++ +++GP+ V ++ ++ S SRGFAF+ F +V A+
Sbjct: 108 PNCCLGVFGLSLYTTESDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEA 167
Query: 345 MDRIGDDGLVVDGRKLFFEYS--SKPTGGSGGHY-GQESAMGARHSNH 389
+R +G+ +DGR++ ++S +P + G Y G+ + +R ++
Sbjct: 168 KERA--NGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRRDY 213
Score = 40 (19.1 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 22/74 (29%), Positives = 27/74 (36%)
Query: 20 GYGAIHEPNFRVGGSYDERRFLDERYSRDNIYPRNA-FQRENYPPPPVGLWP--QSRRRN 76
G A H P R D RR + SR R+ R +Y +SR R+
Sbjct: 19 GKSARHTPA-RSRSKEDSRRSRSKSRSRSESRSRSRRSSRRHYTRSRSRSRSHRRSRSRS 77
Query: 77 YEEDYSLDRESRRH 90
Y DY R S H
Sbjct: 78 YSRDYRR-RHSHSH 90
>UNIPROTKB|Q9PTX2 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
"response to cold" evidence=ISS] [GO:0009790 "embryo development"
evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
[GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
"neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
evidence=IEP] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
Length = 164
Score = 133 (51.9 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 33/99 (33%), Positives = 54/99 (54%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
G + V GLS T E+ L + +++G ++ V V+K+R + SRGF F+ F + A+ M
Sbjct: 6 GKLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAM- 64
Query: 347 RIGDDGLVVDGRKLFFEYSSKPTGGSGGHYGQESAMGAR 385
G +G VDGR++ + + K + G Y S+ G R
Sbjct: 65 -AGMNGKTVDGRQIRVDQAGKSSNDRRGGYRGGSSGGGR 102
Score = 129 (50.5 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 31/77 (40%), Positives = 46/77 (59%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
L V GL DE+ L FSK+ I+++ +V+D+ T SRGF F+ F + EDA A+
Sbjct: 8 LFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGM 67
Query: 510 NGTTLEKNGQILRVAYA 526
NG T++ G+ +RV A
Sbjct: 68 NGKTVD--GRQIRVDQA 82
>RGD|620145 [details] [associations]
symbol:Rbm3 "RNA binding motif (RNP1, RRM) protein 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006412 "translation"
evidence=ISO] [GO:0006417 "regulation of translation"
evidence=ISO;ISS] [GO:0006950 "response to stress" evidence=IEA]
[GO:0009409 "response to cold" evidence=ISO] [GO:0015934 "large
ribosomal subunit" evidence=IDA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=ISO] [GO:0043023 "ribosomal large
subunit binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620145 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727
eggNOG:COG0724 HOVERGEN:HBG107480 HSSP:P09651 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186
EMBL:FM093406 EMBL:AF355190 IPI:IPI00367437 IPI:IPI00955177
RefSeq:NP_446148.1 UniGene:Rn.18057 ProteinModelPortal:Q925G0
MINT:MINT-4611770 STRING:Q925G0 PRIDE:Q925G0 GeneID:114488
KEGG:rno:114488 UCSC:RGD:620145 InParanoid:Q925G0 NextBio:618509
Genevestigator:Q925G0 Uniprot:Q925G0
Length = 155
Score = 133 (51.9 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 34/83 (40%), Positives = 49/83 (59%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
L V GL+ DE+ L FS PI ++ +V+D+ T SRGF F+ F + E AS + A
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRAM 67
Query: 510 NGTTLEKNGQILRVAYA-KSILG 531
NG +L+ G+ +RV +A KS G
Sbjct: 68 NGESLD--GRQIRVDHAGKSARG 88
Score = 125 (49.1 bits), Expect = 8.7e-07, P = 8.7e-07
Identities = 31/92 (33%), Positives = 51/92 (55%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
G + V GL+ T E+ L + +GP+ V V+K+R + SRGF FI F + A +M
Sbjct: 6 GKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMR 65
Query: 347 RIGDDGLVVDGRKLFFEYSSKPTGGS-GGHYG 377
+ + L DGR++ +++ K G+ GG +G
Sbjct: 66 AMNGESL--DGRQIRVDHAGKSARGTRGGAFG 95
>UNIPROTKB|P78332 [details] [associations]
symbol:RBM6 "RNA-binding protein 6" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
InterPro:IPR000467 InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR015880 Pfam:PF01585 PROSITE:PS50102 PROSITE:PS50174
SMART:SM00355 SMART:SM00360 SMART:SM00443 GO:GO:0005634
GO:GO:0000166 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0003723 GO:GO:0006396 EMBL:AC105935
EMBL:AF042857 EMBL:AF069517 EMBL:AF091264 EMBL:U50839 EMBL:AC104450
EMBL:BC046643 IPI:IPI00297723 IPI:IPI00793735 RefSeq:NP_001161054.1
RefSeq:NP_005768.1 UniGene:Hs.696735 ProteinModelPortal:P78332
SMR:P78332 IntAct:P78332 STRING:P78332 PhosphoSite:P78332
DMDM:116242749 PaxDb:P78332 PRIDE:P78332 DNASU:10180
Ensembl:ENST00000266022 Ensembl:ENST00000422955
Ensembl:ENST00000442092 GeneID:10180 KEGG:hsa:10180 UCSC:uc003cyc.3
CTD:10180 GeneCards:GC03P049952 HGNC:HGNC:9903 HPA:HPA026272
HPA:HPA027164 MIM:606886 neXtProt:NX_P78332 PharmGKB:PA34268
eggNOG:NOG319164 HOGENOM:HOG000133022 HOVERGEN:HBG007537
InParanoid:P78332 OMA:YDLDFRG PhylomeDB:P78332 ChiTaRS:RBM6
GenomeRNAi:10180 NextBio:38538 ArrayExpress:P78332 Bgee:P78332
CleanEx:HS_RBM6 Genevestigator:P78332 GermOnline:ENSG00000004534
Uniprot:P78332
Length = 1123
Score = 96 (38.9 bits), Expect = 1.4e-07, Sum P(6) = 1.4e-07
Identities = 35/112 (31%), Positives = 55/112 (49%)
Query: 567 KEYNPDDKQPTRGQEQRSDGDMVQKDGLALQSG-FVWDEASGYYYDAASGFYYDGNTG-- 623
K+Y D + R + SD + G S +++D A+GYYYD +G YYD NT
Sbjct: 759 KKYFRDRRGGGRNSDWSSD---TNRQGQQSSSDCYIYDSATGYYYDPLAGTYYDPNTQQE 815
Query: 624 LYYDGNSGIWYSYDQQTQQYIPCTDQNDNKTSGNGSEPSKQVDGGSKNRKVV 675
+Y + G+ +++ ++ P T Q K+S E SK+ DG K + V
Sbjct: 816 VYVPQDPGL--PEEEEIKEKKP-TSQG--KSSSK-KEMSKR-DGKEKKDRGV 860
Score = 81 (33.6 bits), Expect = 1.4e-07, Sum P(6) = 1.4e-07
Identities = 24/90 (26%), Positives = 48/90 (53%)
Query: 442 SDTGPTHVLVVRGLDEYAD-EEMLR-YEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSV 499
S+ P+ ++ + G+ E A EE+L + P+K+L+L ++ T G+ + F +
Sbjct: 450 SEEKPSRLIRLSGVPEDATKEEILNAFRTPDGMPVKNLQL-KEYNTGYDYGYVCVEFSLL 508
Query: 500 EDASKALEATNGTTLEKNGQILRVAYAKSI 529
EDA +EA GT + ++ ++ + Y S+
Sbjct: 509 EDAIGCMEANQGTLMIQDKEVT-LEYVSSL 537
Score = 79 (32.9 bits), Expect = 1.4e-07, Sum P(6) = 1.4e-07
Identities = 19/82 (23%), Positives = 42/82 (51%)
Query: 968 DKA-IDENNVGNRMLRSMGWHEGLGLGKDGSGMIEPVQAQAMDSRAGLGSQQKKVDPSLE 1026
DK ID ++ G + ++ GW +G GLG G+ +A+ +G+ + + +
Sbjct: 1045 DKEDIDTSSKGGCVQQATGWRKGTGLGYGHPGLASSEEAEGRMRGPSVGASGR----TSK 1100
Query: 1027 VQAGDSYKTLIHKKALARFREM 1048
Q+ ++Y+ + + AR++E+
Sbjct: 1101 RQSNETYRDAVRRVMFARYKEL 1122
Score = 74 (31.1 bits), Expect = 6.1e-07, Sum P(6) = 6.1e-07
Identities = 25/95 (26%), Positives = 45/95 (47%)
Query: 286 SGTIVVKGLSQKTTEEDLYQILAEWGPLR--HVRVIKERNSGVSRGFAFIDFPSVGAARA 343
S TI++K + + T E + ++L + L +VR+IK R + + FID S A
Sbjct: 655 SKTIMLKRIYRSTPPEVIVEVLEPYVRLTTANVRIIKNRTGPMGHTYGFIDLDSHAEALR 714
Query: 344 MMDRIG--DDGLVVDGRKLFFEYSS-KPTGGSGGH 375
++ + D +DG+ + ++ K SG H
Sbjct: 715 VVKILQNLDPPFSIDGKMVAVNLATGKRRNDSGDH 749
Score = 68 (29.0 bits), Expect = 4.4e-07, Sum P(7) = 4.4e-07
Identities = 19/84 (22%), Positives = 43/84 (51%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILA--EWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAAR 342
PS I + G+ + T+E++ + P+++++ +KE N+G G+ ++F + A
Sbjct: 454 PSRLIRLSGVPEDATKEEILNAFRTPDGMPVKNLQ-LKEYNTGYDYGYVCVEFSLLEDAI 512
Query: 343 AMMDRIGDDGLVVDGRKLFFEYSS 366
M+ L++ +++ EY S
Sbjct: 513 GCMEA-NQGTLMIQDKEVTLEYVS 535
Score = 47 (21.6 bits), Expect = 1.4e-07, Sum P(6) = 1.4e-07
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 60 NYPPPPVGLWPQSRRR-NYEEDYSLDRESRRHEKP 93
+YPPPP+ Q R N+ SL + + H P
Sbjct: 29 DYPPPPLKSHAQERHSGNFPGRDSLPFDFQGHSGP 63
Score = 47 (21.6 bits), Expect = 0.00039, Sum P(5) = 0.00039
Identities = 21/68 (30%), Positives = 31/68 (45%)
Query: 420 RTDDAPPAEMNSSNPIPLGKKGSDTGPTHVLVVRGLD----EYADEEMLRYEFSKHAPIK 475
R DAPP++ L +G D G +H RG D ++ E R +F ++ +
Sbjct: 166 RGRDAPPSDFRGRGTYDLDFRGRD-G-SHA-DFRGRDLSDLDFRAREQSRSDF-RNRDVS 221
Query: 476 DLRLVRDK 483
DL RDK
Sbjct: 222 DLDF-RDK 228
Score = 44 (20.5 bits), Expect = 4.4e-07, Sum P(7) = 4.4e-07
Identities = 15/51 (29%), Positives = 19/51 (37%)
Query: 397 WMCTICGCVNFARRTSCFQCNEAR-TDDAP------PAEMNSSNPIPLGKK 440
W C C R+SC C R +A P +S P PL K+
Sbjct: 540 WYCKRCKANIGGHRSSCSFCKNPREVTEAKQELITYPQPQKTSIPAPLEKQ 590
Score = 44 (20.5 bits), Expect = 0.00025, Sum P(5) = 0.00025
Identities = 16/51 (31%), Positives = 23/51 (45%)
Query: 864 SALGSYTPPVATGS---GKRRFSEMPLPPATQKEQPQTTYRDRAAERRSLY 911
+ LG P +A+ G+ R + T K Q TYRD A RR ++
Sbjct: 1068 TGLGYGHPGLASSEEAEGRMRGPSVGASGRTSKRQSNETYRD--AVRRVMF 1116
Score = 41 (19.5 bits), Expect = 1.4e-07, Sum P(6) = 1.4e-07
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 111 SFPEFDKFRDGYRNIEN--YRDHGFERPP 137
SFPE RD R++++ YR E P
Sbjct: 426 SFPEGKTARDAQRDLQDQDYRTGPSEEKP 454
Score = 41 (19.5 bits), Expect = 4.2e-06, Sum P(5) = 4.2e-06
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 57 QRENYPPPPVGLWPQSRRRNYEEDYSLDRESRRHEK 92
++ N P P P+ R+R ++ L + R E+
Sbjct: 589 KQPNQPLRPADKEPEPRKREEGQESRLGHQKREAER 624
Score = 38 (18.4 bits), Expect = 1.4e-07, Sum P(6) = 1.4e-07
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 886 PLPPATQKEQ 895
PLPP +KE+
Sbjct: 881 PLPPTVKKEE 890
Score = 37 (18.1 bits), Expect = 3.2e-07, Sum P(6) = 3.2e-07
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 123 RNIENYRDHGFERPPRFG 140
R E+ DH ERP FG
Sbjct: 312 RREESTHDHTIERPA-FG 328
>UNIPROTKB|E2R4B2 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 OMA:DRYEEYD EMBL:AAEX03009371
Ensembl:ENSCAFT00000004456 Uniprot:E2R4B2
Length = 278
Score = 150 (57.9 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 31/81 (38%), Positives = 52/81 (64%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
P+ + V GLS TTE DL ++ + +GPL V V+ ++ +G SRGFAF+ F + ++
Sbjct: 117 PNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEA 176
Query: 345 MDRIGDDGLVVDGRKLFFEYS 365
M+R +G+ +DGR++ +YS
Sbjct: 177 MERA--NGMELDGRRIRVDYS 195
Score = 146 (56.5 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKA 505
P L V GL Y E LR FS++ P+ + +V D+ T SRGFAF++F ++D+ +A
Sbjct: 117 PNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEA 176
Query: 506 LEATNGTTLEKNGQILRVAYA 526
+E NG +E +G+ +RV Y+
Sbjct: 177 MERANG--MELDGRRIRVDYS 195
>UNIPROTKB|Q3ZBT6 [details] [associations]
symbol:TRA2B "Transformer-2 protein homolog beta"
species:9913 "Bos taurus" [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0000398 GO:GO:0048026 GO:GO:0000381 HOGENOM:HOG000276232
GeneTree:ENSGT00700000104309 HSSP:P62995 KO:K12897
OrthoDB:EOG4BVRW2 EMBL:BC103113 IPI:IPI00717759
RefSeq:NP_001029948.1 UniGene:Bt.49333 ProteinModelPortal:Q3ZBT6
SMR:Q3ZBT6 STRING:Q3ZBT6 PRIDE:Q3ZBT6 Ensembl:ENSBTAT00000002225
GeneID:615156 KEGG:bta:615156 CTD:6434 eggNOG:NOG297815
HOVERGEN:HBG104971 InParanoid:Q3ZBT6 OMA:YDDREYY NextBio:20899475
Uniprot:Q3ZBT6
Length = 288
Score = 152 (58.6 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 35/81 (43%), Positives = 51/81 (62%)
Query: 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKA 505
P L V GL Y E LR FSK+ PI D+ +V D+ + SRGFAF++F +V+DA +A
Sbjct: 116 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEA 175
Query: 506 LEATNGTTLEKNGQILRVAYA 526
E NG +E +G+ +RV ++
Sbjct: 176 KERANG--MELDGRRIRVDFS 194
Score = 140 (54.3 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 34/108 (31%), Positives = 64/108 (59%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
P+ + V GLS TTE DL ++ +++GP+ V ++ ++ S SRGFAF+ F +V A+
Sbjct: 116 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEA 175
Query: 345 MDRIGDDGLVVDGRKLFFEYS--SKPTGGSGGHY-GQESAMGARHSNH 389
+R +G+ +DGR++ ++S +P + G Y G+ + +R ++
Sbjct: 176 KERA--NGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRRDY 221
Score = 40 (19.1 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 22/74 (29%), Positives = 27/74 (36%)
Query: 20 GYGAIHEPNFRVGGSYDERRFLDERYSRDNIYPRNA-FQRENYPPPPVGLWP--QSRRRN 76
G A H P R D RR + SR R+ R +Y +SR R+
Sbjct: 27 GKSARHTPA-RSRSKEDSRRSRSKSRSRSESRSRSRRSSRRHYTRSRSRSRSHRRSRSRS 85
Query: 77 YEEDYSLDRESRRH 90
Y DY R S H
Sbjct: 86 YSRDYRR-RHSHSH 98
>UNIPROTKB|E2RD37 [details] [associations]
symbol:TRA2B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 OMA:YDDREYY EMBL:AAEX03017294
ProteinModelPortal:E2RD37 PRIDE:E2RD37 Ensembl:ENSCAFT00000021194
NextBio:20853966 Uniprot:E2RD37
Length = 288
Score = 152 (58.6 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 35/81 (43%), Positives = 51/81 (62%)
Query: 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKA 505
P L V GL Y E LR FSK+ PI D+ +V D+ + SRGFAF++F +V+DA +A
Sbjct: 116 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEA 175
Query: 506 LEATNGTTLEKNGQILRVAYA 526
E NG +E +G+ +RV ++
Sbjct: 176 KERANG--MELDGRRIRVDFS 194
Score = 140 (54.3 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 34/108 (31%), Positives = 64/108 (59%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
P+ + V GLS TTE DL ++ +++GP+ V ++ ++ S SRGFAF+ F +V A+
Sbjct: 116 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEA 175
Query: 345 MDRIGDDGLVVDGRKLFFEYS--SKPTGGSGGHY-GQESAMGARHSNH 389
+R +G+ +DGR++ ++S +P + G Y G+ + +R ++
Sbjct: 176 KERA--NGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRRDY 221
Score = 40 (19.1 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 22/74 (29%), Positives = 27/74 (36%)
Query: 20 GYGAIHEPNFRVGGSYDERRFLDERYSRDNIYPRNA-FQRENYPPPPVGLWP--QSRRRN 76
G A H P R D RR + SR R+ R +Y +SR R+
Sbjct: 27 GKSARHTPA-RSRSKEDSRRSRSKSRSRSESRSRSRRSSRRHYTRSRSRSRSHRRSRSRS 85
Query: 77 YEEDYSLDRESRRH 90
Y DY R S H
Sbjct: 86 YSRDYRR-RHSHSH 98
>UNIPROTKB|P62995 [details] [associations]
symbol:TRA2B "Transformer-2 protein homolog beta"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000375 "RNA splicing, via
transesterification reactions" evidence=TAS] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0048026
"positive regulation of mRNA splicing, via spliceosome"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
EMBL:CH471052 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0048026 GO:GO:0000381 HOGENOM:HOG000276232 KO:K12897
OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 HOVERGEN:HBG104971
OMA:YDDREYY EMBL:U61267 EMBL:U87836 EMBL:AF057159 EMBL:U68063
EMBL:AK301118 EMBL:BC000160 EMBL:BC000451 EMBL:BC005898
IPI:IPI00220938 IPI:IPI00301503 IPI:IPI00472633
RefSeq:NP_001230808.1 RefSeq:NP_004584.1 UniGene:Hs.533122 PDB:2CQC
PDB:2KXN PDB:2RRA PDB:2RRB PDBsum:2CQC PDBsum:2KXN PDBsum:2RRA
PDBsum:2RRB ProteinModelPortal:P62995 SMR:P62995 DIP:DIP-42278N
IntAct:P62995 MINT:MINT-5004415 STRING:P62995 PhosphoSite:P62995
DMDM:51703330 PaxDb:P62995 PRIDE:P62995 DNASU:6434
Ensembl:ENST00000342294 Ensembl:ENST00000382191
Ensembl:ENST00000453386 Ensembl:ENST00000456380 GeneID:6434
KEGG:hsa:6434 UCSC:uc003fpv.3 GeneCards:GC03M185632
H-InvDB:HIX0003928 HGNC:HGNC:10781 HPA:CAB011692 MIM:602719
neXtProt:NX_P62995 PharmGKB:PA35697 InParanoid:P62995
PhylomeDB:P62995 ChiTaRS:TRA2B EvolutionaryTrace:P62995
GenomeRNAi:6434 NextBio:24991 Bgee:P62995 CleanEx:HS_SFRS10
Genevestigator:P62995 GermOnline:ENSG00000136527 Uniprot:P62995
Length = 288
Score = 152 (58.6 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 35/81 (43%), Positives = 51/81 (62%)
Query: 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKA 505
P L V GL Y E LR FSK+ PI D+ +V D+ + SRGFAF++F +V+DA +A
Sbjct: 116 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEA 175
Query: 506 LEATNGTTLEKNGQILRVAYA 526
E NG +E +G+ +RV ++
Sbjct: 176 KERANG--MELDGRRIRVDFS 194
Score = 140 (54.3 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 34/108 (31%), Positives = 64/108 (59%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
P+ + V GLS TTE DL ++ +++GP+ V ++ ++ S SRGFAF+ F +V A+
Sbjct: 116 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEA 175
Query: 345 MDRIGDDGLVVDGRKLFFEYS--SKPTGGSGGHY-GQESAMGARHSNH 389
+R +G+ +DGR++ ++S +P + G Y G+ + +R ++
Sbjct: 176 KERA--NGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRRDY 221
Score = 40 (19.1 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 22/74 (29%), Positives = 27/74 (36%)
Query: 20 GYGAIHEPNFRVGGSYDERRFLDERYSRDNIYPRNA-FQRENYPPPPVGLWP--QSRRRN 76
G A H P R D RR + SR R+ R +Y +SR R+
Sbjct: 27 GKSARHTPA-RSRSKEDSRRSRSKSRSRSESRSRSRRSSRRHYTRSRSRSRSHRRSRSRS 85
Query: 77 YEEDYSLDRESRRH 90
Y DY R S H
Sbjct: 86 YSRDYRR-RHSHSH 98
>MGI|MGI:106016 [details] [associations]
symbol:Tra2b "transformer 2 beta homolog (Drosophila)"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:106016 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0000398 GO:GO:0048026 GO:GO:0000381
HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 KO:K12897
OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 HOVERGEN:HBG104971
OMA:YDDREYY EMBL:X80232 EMBL:AK049573 EMBL:AK077418 EMBL:AK080378
EMBL:BC061177 IPI:IPI00139259 IPI:IPI00457594 PIR:S68798
RefSeq:NP_033212.1 UniGene:Mm.210352 UniGene:Mm.389440
UniGene:Mm.442193 ProteinModelPortal:P62996 SMR:P62996
STRING:P62996 PhosphoSite:P62996 PaxDb:P62996 PRIDE:P62996
Ensembl:ENSMUST00000161286 Ensembl:ENSMUST00000162413 GeneID:20462
KEGG:mmu:20462 UCSC:uc007ysc.1 InParanoid:P62996 NextBio:298551
Bgee:P62996 Genevestigator:P62996 GermOnline:ENSMUSG00000022858
Uniprot:P62996
Length = 288
Score = 152 (58.6 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 35/81 (43%), Positives = 51/81 (62%)
Query: 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKA 505
P L V GL Y E LR FSK+ PI D+ +V D+ + SRGFAF++F +V+DA +A
Sbjct: 116 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEA 175
Query: 506 LEATNGTTLEKNGQILRVAYA 526
E NG +E +G+ +RV ++
Sbjct: 176 KERANG--MELDGRRIRVDFS 194
Score = 140 (54.3 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 34/108 (31%), Positives = 64/108 (59%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
P+ + V GLS TTE DL ++ +++GP+ V ++ ++ S SRGFAF+ F +V A+
Sbjct: 116 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEA 175
Query: 345 MDRIGDDGLVVDGRKLFFEYS--SKPTGGSGGHY-GQESAMGARHSNH 389
+R +G+ +DGR++ ++S +P + G Y G+ + +R ++
Sbjct: 176 KERA--NGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRRDY 221
Score = 40 (19.1 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 22/74 (29%), Positives = 27/74 (36%)
Query: 20 GYGAIHEPNFRVGGSYDERRFLDERYSRDNIYPRNA-FQRENYPPPPVGLWP--QSRRRN 76
G A H P R D RR + SR R+ R +Y +SR R+
Sbjct: 27 GKSARHTPA-RSRSKEDSRRSRSKSRSRSESRSRSRRSSRRHYTRSRSRSRSHRRSRSRS 85
Query: 77 YEEDYSLDRESRRH 90
Y DY R S H
Sbjct: 86 YSRDYRR-RHSHSH 98
>RGD|619886 [details] [associations]
symbol:Tra2b "transformer 2 beta homolog (Drosophila)"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000302 "response to reactive oxygen species"
evidence=IEP] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO;ISS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO;ISS] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0003729 "mRNA binding" evidence=ISO;ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;ISS] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISO;ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:619886 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0000302 GO:GO:0000398 GO:GO:0048026
GO:GO:0000381 HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309
KO:K12897 OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815
HOVERGEN:HBG104971 EMBL:D49708 EMBL:BC070948 IPI:IPI00202484
RefSeq:NP_476460.1 UniGene:Rn.8538 ProteinModelPortal:P62997
SMR:P62997 IntAct:P62997 STRING:P62997 PhosphoSite:P62997
PRIDE:P62997 Ensembl:ENSRNOT00000002429 GeneID:117259
KEGG:rno:117259 UCSC:RGD:619886 InParanoid:P62997 NextBio:620130
Genevestigator:P62997 GermOnline:ENSRNOG00000001783 Uniprot:P62997
Length = 288
Score = 152 (58.6 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 35/81 (43%), Positives = 51/81 (62%)
Query: 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKA 505
P L V GL Y E LR FSK+ PI D+ +V D+ + SRGFAF++F +V+DA +A
Sbjct: 116 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEA 175
Query: 506 LEATNGTTLEKNGQILRVAYA 526
E NG +E +G+ +RV ++
Sbjct: 176 KERANG--MELDGRRIRVDFS 194
Score = 140 (54.3 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 34/108 (31%), Positives = 64/108 (59%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
P+ + V GLS TTE DL ++ +++GP+ V ++ ++ S SRGFAF+ F +V A+
Sbjct: 116 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEA 175
Query: 345 MDRIGDDGLVVDGRKLFFEYS--SKPTGGSGGHY-GQESAMGARHSNH 389
+R +G+ +DGR++ ++S +P + G Y G+ + +R ++
Sbjct: 176 KERA--NGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRRDY 221
Score = 40 (19.1 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 22/74 (29%), Positives = 27/74 (36%)
Query: 20 GYGAIHEPNFRVGGSYDERRFLDERYSRDNIYPRNA-FQRENYPPPPVGLWP--QSRRRN 76
G A H P R D RR + SR R+ R +Y +SR R+
Sbjct: 27 GKSARHTPA-RSRSKEDSRRSRSKSRSRSESRSRSRRSSRRHYTRSRSRSRSHRRSRSRS 85
Query: 77 YEEDYSLDRESRRH 90
Y DY R S H
Sbjct: 86 YSRDYRR-RHSHSH 98
>UNIPROTKB|Q06AA6 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000398 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 CTD:29896
HOVERGEN:HBG102125 KO:K12897 OMA:DRYEEYD OrthoDB:EOG4BVRW2
EMBL:CU928731 EMBL:DQ972958 RefSeq:NP_001070691.1 UniGene:Ssc.14084
SMR:Q06AA6 Ensembl:ENSSSCT00000016762 GeneID:768110 KEGG:ssc:768110
Uniprot:Q06AA6
Length = 279
Score = 150 (57.9 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 31/81 (38%), Positives = 52/81 (64%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
P+ + V GLS TTE DL ++ + +GPL V V+ ++ +G SRGFAF+ F + ++
Sbjct: 117 PNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEA 176
Query: 345 MDRIGDDGLVVDGRKLFFEYS 365
M+R +G+ +DGR++ +YS
Sbjct: 177 MERA--NGMELDGRRIRVDYS 195
Score = 146 (56.5 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKA 505
P L V GL Y E LR FS++ P+ + +V D+ T SRGFAF++F ++D+ +A
Sbjct: 117 PNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEA 176
Query: 506 LEATNGTTLEKNGQILRVAYA 526
+E NG +E +G+ +RV Y+
Sbjct: 177 MERANG--MELDGRRIRVDYS 195
>UNIPROTKB|Q2KJ71 [details] [associations]
symbol:TRA2A "Transformer 2 alpha homolog (Drosophila)"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0000398 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00700000104309 CTD:29896 HOVERGEN:HBG102125 KO:K12897
OMA:DRYEEYD OrthoDB:EOG4BVRW2 EMBL:DAAA02010222 EMBL:BC105489
IPI:IPI00695902 RefSeq:NP_001039845.1 UniGene:Bt.43563 SMR:Q2KJ71
STRING:Q2KJ71 Ensembl:ENSBTAT00000016756 GeneID:534586
KEGG:bta:534586 InParanoid:Q2KJ71 NextBio:20876456 Uniprot:Q2KJ71
Length = 281
Score = 150 (57.9 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 31/81 (38%), Positives = 52/81 (64%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
P+ + V GLS TTE DL ++ + +GPL V V+ ++ +G SRGFAF+ F + ++
Sbjct: 117 PNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEA 176
Query: 345 MDRIGDDGLVVDGRKLFFEYS 365
M+R +G+ +DGR++ +YS
Sbjct: 177 MERA--NGMELDGRRIRVDYS 195
Score = 146 (56.5 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKA 505
P L V GL Y E LR FS++ P+ + +V D+ T SRGFAF++F ++D+ +A
Sbjct: 117 PNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEA 176
Query: 506 LEATNGTTLEKNGQILRVAYA 526
+E NG +E +G+ +RV Y+
Sbjct: 177 MERANG--MELDGRRIRVDYS 195
>MGI|MGI:1933972 [details] [associations]
symbol:Tra2a "transformer 2 alpha homolog (Drosophila)"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0042802 "identical protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1933972 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000276232
HOVERGEN:HBG102125 OrthoDB:EOG4BVRW2 ChiTaRS:TRA2A EMBL:BC057448
IPI:IPI01008014 UniGene:Mm.196598 ProteinModelPortal:Q6PFR5
SMR:Q6PFR5 IntAct:Q6PFR5 STRING:Q6PFR5 PhosphoSite:Q6PFR5
PaxDb:Q6PFR5 PRIDE:Q6PFR5 UCSC:uc009bwm.1 InParanoid:Q6PFR5
CleanEx:MM_TRA2A Genevestigator:Q6PFR5
GermOnline:ENSMUSG00000029817 Uniprot:Q6PFR5
Length = 281
Score = 150 (57.9 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 31/81 (38%), Positives = 52/81 (64%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
P+ + V GLS TTE DL ++ + +GPL V V+ ++ +G SRGFAF+ F + ++
Sbjct: 115 PNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEA 174
Query: 345 MDRIGDDGLVVDGRKLFFEYS 365
M+R +G+ +DGR++ +YS
Sbjct: 175 MERA--NGMELDGRRIRVDYS 193
Score = 146 (56.5 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKA 505
P L V GL Y E LR FS++ P+ + +V D+ T SRGFAF++F ++D+ +A
Sbjct: 115 PNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEA 174
Query: 506 LEATNGTTLEKNGQILRVAYA 526
+E NG +E +G+ +RV Y+
Sbjct: 175 MERANG--MELDGRRIRVDYS 193
>UNIPROTKB|Q13595 [details] [associations]
symbol:TRA2A "Transformer-2 protein homolog alpha"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:U53209 EMBL:BC017094
IPI:IPI00013891 IPI:IPI00220447 RefSeq:NP_037425.1
UniGene:Hs.445652 ProteinModelPortal:Q13595 SMR:Q13595
IntAct:Q13595 MINT:MINT-1683046 STRING:Q13595 PhosphoSite:Q13595
DMDM:4033480 PaxDb:Q13595 PRIDE:Q13595 DNASU:29896
Ensembl:ENST00000297071 GeneID:29896 KEGG:hsa:29896 UCSC:uc003swi.3
CTD:29896 GeneCards:GC07M023544 HGNC:HGNC:16645 HPA:HPA054018
MIM:602718 neXtProt:NX_Q13595 PharmGKB:PA164726707
HOVERGEN:HBG102125 InParanoid:Q13595 KO:K12897 OMA:DRYEEYD
OrthoDB:EOG4BVRW2 PhylomeDB:Q13595 ChiTaRS:TRA2A GenomeRNAi:29896
NextBio:52459 ArrayExpress:Q13595 Bgee:Q13595 Genevestigator:Q13595
GermOnline:ENSG00000164548 Uniprot:Q13595
Length = 282
Score = 150 (57.9 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 31/81 (38%), Positives = 52/81 (64%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
P+ + V GLS TTE DL ++ + +GPL V V+ ++ +G SRGFAF+ F + ++
Sbjct: 117 PNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEA 176
Query: 345 MDRIGDDGLVVDGRKLFFEYS 365
M+R +G+ +DGR++ +YS
Sbjct: 177 MERA--NGMELDGRRIRVDYS 195
Score = 146 (56.5 bits), Expect = 4.2e-07, P = 4.2e-07
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKA 505
P L V GL Y E LR FS++ P+ + +V D+ T SRGFAF++F ++D+ +A
Sbjct: 117 PNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEA 176
Query: 506 LEATNGTTLEKNGQILRVAYA 526
+E NG +E +G+ +RV Y+
Sbjct: 177 MERANG--MELDGRRIRVDYS 195
>RGD|1562563 [details] [associations]
symbol:Tra2a "transformer 2 alpha homolog (Drosophila)"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA;ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0042802 "identical protein binding"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1562563 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000398
eggNOG:COG0724 HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309
HOVERGEN:HBG102125 OrthoDB:EOG4BVRW2 EMBL:BC161978 IPI:IPI00201580
UniGene:Rn.203363 SMR:B1WC25 STRING:B1WC25
Ensembl:ENSRNOT00000012325 UCSC:RGD:1562563 Genevestigator:B1WC25
Uniprot:B1WC25
Length = 282
Score = 150 (57.9 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 31/81 (38%), Positives = 52/81 (64%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
P+ + V GLS TTE DL ++ + +GPL V V+ ++ +G SRGFAF+ F + ++
Sbjct: 115 PNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEA 174
Query: 345 MDRIGDDGLVVDGRKLFFEYS 365
M+R +G+ +DGR++ +YS
Sbjct: 175 MERA--NGMELDGRRIRVDYS 193
Score = 146 (56.5 bits), Expect = 4.2e-07, P = 4.2e-07
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKA 505
P L V GL Y E LR FS++ P+ + +V D+ T SRGFAF++F ++D+ +A
Sbjct: 115 PNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEA 174
Query: 506 LEATNGTTLEKNGQILRVAYA 526
+E NG +E +G+ +RV Y+
Sbjct: 175 MERANG--MELDGRRIRVDYS 193
>UNIPROTKB|K7ER40 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
Length = 174
Score = 132 (51.5 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 32/97 (32%), Positives = 53/97 (54%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
G + V GLS T E+ L Q+ +++G + V V+K+R + SRGF F+ F ++ A+ M
Sbjct: 6 GKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM- 64
Query: 347 RIGDDGLVVDGRKLFFEYSSKPTGGSGGHYGQESAMG 383
+ +G VDGR++ + + K + Y SA G
Sbjct: 65 -MAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGG 100
Score = 126 (49.4 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 32/85 (37%), Positives = 50/85 (58%)
Query: 442 SDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVED 501
SD G L V GL +E+ L FSK+ I ++ +V+D+ T SRGF F+ F +++D
Sbjct: 3 SDEGK---LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 502 ASKALEATNGTTLEKNGQILRVAYA 526
A A+ A NG +++ G+ +RV A
Sbjct: 60 AKDAMMAMNGKSVD--GRQIRVDQA 82
Score = 37 (18.1 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 10/29 (34%), Positives = 11/29 (37%)
Query: 925 GSGDSNRDFALKKGSVDSMPFPPGVGGRG 953
G NR + GS F G GRG
Sbjct: 83 GKSSDNRSRGYRGGSAGGRGFFRGGRGRG 111
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 132 (51.5 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 32/97 (32%), Positives = 53/97 (54%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
G + V GLS T E+ L Q+ +++G + V V+K+R + SRGF F+ F ++ A+ M
Sbjct: 6 GKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM- 64
Query: 347 RIGDDGLVVDGRKLFFEYSSKPTGGSGGHYGQESAMG 383
+ +G VDGR++ + + K + Y SA G
Sbjct: 65 -MAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGG 100
Score = 126 (49.4 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 32/85 (37%), Positives = 50/85 (58%)
Query: 442 SDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVED 501
SD G L V GL +E+ L FSK+ I ++ +V+D+ T SRGF F+ F +++D
Sbjct: 3 SDEGK---LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 502 ASKALEATNGTTLEKNGQILRVAYA 526
A A+ A NG +++ G+ +RV A
Sbjct: 60 AKDAMMAMNGKSVD--GRQIRVDQA 82
>UNIPROTKB|F1S6R1 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:CU929580
Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
Length = 172
Score = 132 (51.5 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 32/95 (33%), Positives = 54/95 (56%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
G + V GLS T E+ L Q+ +++G + V V+K+R + SRGF F+ F ++ A+ M
Sbjct: 6 GKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM- 64
Query: 347 RIGDDGLVVDGRKLFFEYSSKPTGG-SGGHYGQES 380
+ +G VDGR++ + + K + S G+ G S
Sbjct: 65 -MAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSS 98
Score = 126 (49.4 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 32/85 (37%), Positives = 50/85 (58%)
Query: 442 SDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVED 501
SD G L V GL +E+ L FSK+ I ++ +V+D+ T SRGF F+ F +++D
Sbjct: 3 SDEGK---LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 502 ASKALEATNGTTLEKNGQILRVAYA 526
A A+ A NG +++ G+ +RV A
Sbjct: 60 AKDAMMAMNGKSVD--GRQIRVDQA 82
>UNIPROTKB|H9KZV5 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0009411 "response to UV"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0048255 "mRNA stabilization" evidence=IEA] [GO:0070181 "SSU
rRNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000019966 Uniprot:H9KZV5
Length = 190
Score = 131 (51.2 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 31/92 (33%), Positives = 54/92 (58%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
G ++V GLS T E+ L Q+ +++G + V V+K+R + SRGF F+ F ++ A+ M
Sbjct: 6 GKLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM- 64
Query: 347 RIGDDGLVVDGRKLFFEYSSKPTGG-SGGHYG 377
+ +G VDGR++ + + K + S G+ G
Sbjct: 65 -MAMNGKSVDGRQIRVDQAGKSSENRSRGYRG 95
Score = 127 (49.8 bits), Expect = 8.4e-07, Sum P(2) = 8.4e-07
Identities = 29/77 (37%), Positives = 48/77 (62%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
L+V GL +E+ L FSK+ I ++ +V+D+ T SRGF F+ F +++DA A+ A
Sbjct: 8 LLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 510 NGTTLEKNGQILRVAYA 526
NG +++ G+ +RV A
Sbjct: 68 NGKSVD--GRQIRVDQA 82
Score = 45 (20.9 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 599 GFVWDEASGYYYDAASGFYYDGNTGLYYDGNSGIWY--SYD 637
G +D SG Y + + +Y + G Y D +SG Y SYD
Sbjct: 125 GSRFDSRSGGY-NGSRDYYNSRSQGGYGDRSSGGSYRDSYD 164
Score = 37 (18.1 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
Identities = 10/29 (34%), Positives = 11/29 (37%)
Query: 925 GSGDSNRDFALKKGSVDSMPFPPGVGGRG 953
G NR + GS F G GRG
Sbjct: 83 GKSSENRSRGYRGGSTGGRGFFRGGRGRG 111
>UNIPROTKB|O93235 [details] [associations]
symbol:cirbp-a "Cold-inducible RNA-binding protein A"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=IMP] [GO:0009409
"response to cold" evidence=IEP] [GO:0009411 "response to UV"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016477
"cell migration" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0019899 "enzyme binding"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030371
"translation repressor activity" evidence=ISS] [GO:0034063 "stress
granule assembly" evidence=ISS] [GO:0045727 "positive regulation of
translation" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0048793 "pronephros development"
evidence=IEP;IMP] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0070181 "SSU rRNA binding" evidence=ISS] [GO:0072004 "kidney
field specification" evidence=IMP] [GO:0005840 "ribosome"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0016477 GO:GO:0022008 GO:GO:0000166
GO:GO:0030371 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0019899
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0007369
GO:GO:0010494 GO:GO:0034063 GO:GO:0048793 EMBL:AB007597
EMBL:AF278702 EMBL:BC041204 RefSeq:NP_001080069.1 UniGene:Xl.4515
ProteinModelPortal:O93235 SMR:O93235 GeneID:379761 KEGG:xla:379761
CTD:379761 Xenbase:XB-GENE-6256647 HOVERGEN:HBG107480 GO:GO:0070181
GO:GO:0072004 GO:GO:0060212 Uniprot:O93235
Length = 166
Score = 131 (51.2 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 32/99 (32%), Positives = 56/99 (56%)
Query: 283 VAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAAR 342
++ G + + GL+ +T E+ L Q ++G + V V+K+R + SRGF F+ F +V A+
Sbjct: 1 MSDEGKLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAK 60
Query: 343 AMMDRIGDDGLVVDGRKLFFEYSSKPTGGS-GGHYGQES 380
M + +G VDGR++ + + K +G GG+ G S
Sbjct: 61 DAM--MAMNGKSVDGRQIRVDQAGKSSGERRGGYRGGSS 97
Score = 124 (48.7 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 31/85 (36%), Positives = 51/85 (60%)
Query: 442 SDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVED 501
SD G L + GL+ +E+ L F+K+ I ++ +V+D+ T SRGF F+ F +V+D
Sbjct: 2 SDEGK---LFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDD 58
Query: 502 ASKALEATNGTTLEKNGQILRVAYA 526
A A+ A NG +++ G+ +RV A
Sbjct: 59 AKDAMMAMNGKSVD--GRQIRVDQA 81
>UNIPROTKB|E2R771 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:AAEX03026334 RefSeq:XP_863171.1 ProteinModelPortal:E2R771
Ensembl:ENSCAFT00000024556 GeneID:609457 KEGG:cfa:609457
Uniprot:E2R771
Length = 162
Score = 131 (51.2 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 34/83 (40%), Positives = 48/83 (57%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
L V GL+ DE+ L F PI ++ +V+D+ T SRGF F+ F E AS A+ A
Sbjct: 8 LFVGGLNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHASDAMRAM 67
Query: 510 NGTTLEKNGQILRVAYA-KSILG 531
NG +L+ G+ +RV +A KS G
Sbjct: 68 NGESLD--GRQIRVDHAGKSARG 88
Score = 120 (47.3 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 31/92 (33%), Positives = 48/92 (52%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
G + V GL+ T E+ L +GP+ V V+K+R + SRGF FI F A M
Sbjct: 6 GKLFVGGLNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHASDAMR 65
Query: 347 RIGDDGLVVDGRKLFFEYSSKPTGGS-GGHYG 377
+ + L DGR++ +++ K G+ GG +G
Sbjct: 66 AMNGESL--DGRQIRVDHAGKSARGTRGGAFG 95
>TAIR|locus:2172144 [details] [associations]
symbol:AT5G54580 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005739
"mitochondrion" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB016879 HOGENOM:HOG000276232
HSSP:Q61474 UniGene:At.52694 EMBL:AY072101 EMBL:AY096589
EMBL:AY085234 IPI:IPI00521049 RefSeq:NP_200269.1 UniGene:At.20805
ProteinModelPortal:Q9FIU6 SMR:Q9FIU6 IntAct:Q9FIU6 PaxDb:Q9FIU6
PRIDE:Q9FIU6 EnsemblPlants:AT5G54580.1 GeneID:835546
KEGG:ath:AT5G54580 TAIR:At5g54580 eggNOG:NOG324885
InParanoid:Q9FIU6 OMA:IKGMDGK PhylomeDB:Q9FIU6
ProtClustDB:CLSN2696829 ArrayExpress:Q9FIU6 Genevestigator:Q9FIU6
Uniprot:Q9FIU6
Length = 156
Score = 131 (51.2 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 32/97 (32%), Positives = 55/97 (56%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSV-GAARA 343
PS + V GLS++TT E L A++G + +V+ +R SG S+GF F+ + ++ +A+
Sbjct: 54 PSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKG 113
Query: 344 MMDRIGDDGLVVDGRKLFFEYSSKPTGGSGGHYGQES 380
+ G DG +DG +F EY+ +P S + Q +
Sbjct: 114 IA---GMDGKFLDGWVIFAEYA-RPREQSQSYQPQNN 146
Score = 112 (44.5 bits), Expect = 8.5e-05, P = 8.5e-05
Identities = 24/82 (29%), Positives = 46/82 (56%)
Query: 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKA 505
P+ L V GL + E LR F++ + D ++V D+ + S+GF F+ + ++ED++K
Sbjct: 54 PSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKG 113
Query: 506 LEATNGTTLEKNGQILRVAYAK 527
+ +G L+ G ++ YA+
Sbjct: 114 IAGMDGKFLD--GWVIFAEYAR 133
>UNIPROTKB|J3KP15 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000358156
Uniprot:J3KP15
Length = 134
Score = 131 (51.2 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 32/90 (35%), Positives = 47/90 (52%)
Query: 438 GKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFH 497
G+ D L V L + LR F K+ + D+ + RD++T SRGFAF+ FH
Sbjct: 4 GRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFH 63
Query: 498 SVEDASKALEATNGTTLEKNGQILRVAYAK 527
DA A++A +G L+ G+ LRV A+
Sbjct: 64 DKRDAEDAMDAMDGAVLD--GRELRVQMAR 91
Score = 101 (40.6 bits), Expect = 0.00032, P = 0.00032
Identities = 24/73 (32%), Positives = 43/73 (58%)
Query: 288 TIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDR 347
++ V L+ +T+ + L ++ ++G + V + ++R + SRGFAF+ F A MD
Sbjct: 15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 74
Query: 348 IGDDGLVVDGRKL 360
+ DG V+DGR+L
Sbjct: 75 M--DGAVLDGREL 85
>UNIPROTKB|J3QL05 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000583836
Uniprot:J3QL05
Length = 130
Score = 131 (51.2 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 32/90 (35%), Positives = 47/90 (52%)
Query: 438 GKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFH 497
G+ D L V L + LR F K+ + D+ + RD++T SRGFAF+ FH
Sbjct: 4 GRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFH 63
Query: 498 SVEDASKALEATNGTTLEKNGQILRVAYAK 527
DA A++A +G L+ G+ LRV A+
Sbjct: 64 DKRDAEDAMDAMDGAVLD--GRELRVQMAR 91
Score = 101 (40.6 bits), Expect = 0.00032, P = 0.00032
Identities = 24/73 (32%), Positives = 43/73 (58%)
Query: 288 TIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDR 347
++ V L+ +T+ + L ++ ++G + V + ++R + SRGFAF+ F A MD
Sbjct: 15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 74
Query: 348 IGDDGLVVDGRKL 360
+ DG V+DGR+L
Sbjct: 75 M--DGAVLDGREL 85
>GENEDB_PFALCIPARUM|PF13_0122 [details] [associations]
symbol:PF13_0122 "cyclophilin, putative"
species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=ISS] [GO:0006457 "protein folding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K01802 EMBL:AL844509 HOGENOM:HOG000276232
GO:GO:0003755 RefSeq:XP_002809024.1 ProteinModelPortal:C0H5C7
EnsemblProtists:PF13_0122:mRNA GeneID:814093 KEGG:pfa:PF13_0122
EuPathDB:PlasmoDB:PF3D7_1320900 ProtClustDB:CLSZ2433376
Uniprot:C0H5C7
Length = 125
Score = 131 (51.2 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 32/87 (36%), Positives = 48/87 (55%)
Query: 442 SDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVED 501
SD T +L V G+DE DE+ L FS I+++ + + T +RGFAF+ + V+D
Sbjct: 2 SDNNATDILFVGGIDETIDEKSLYDIFSSFGDIRNIEVPLNMTTKKNRGFAFVEYVEVDD 61
Query: 502 ASKALEATNGTTLEKNGQILRVAYAKS 528
A AL N E NG+ + V Y+K+
Sbjct: 62 AKHALYNMNN--FELNGKRIHVNYSKT 86
>UNIPROTKB|C0H5C7 [details] [associations]
symbol:PF13_0122 "RRM containing cyclophilin" species:36329
"Plasmodium falciparum 3D7" [GO:0000413 "protein peptidyl-prolyl
isomerization" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=ISS] [GO:0006457 "protein folding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K01802 EMBL:AL844509 HOGENOM:HOG000276232
GO:GO:0003755 RefSeq:XP_002809024.1 ProteinModelPortal:C0H5C7
EnsemblProtists:PF13_0122:mRNA GeneID:814093 KEGG:pfa:PF13_0122
EuPathDB:PlasmoDB:PF3D7_1320900 ProtClustDB:CLSZ2433376
Uniprot:C0H5C7
Length = 125
Score = 131 (51.2 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 32/87 (36%), Positives = 48/87 (55%)
Query: 442 SDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVED 501
SD T +L V G+DE DE+ L FS I+++ + + T +RGFAF+ + V+D
Sbjct: 2 SDNNATDILFVGGIDETIDEKSLYDIFSSFGDIRNIEVPLNMTTKKNRGFAFVEYVEVDD 61
Query: 502 ASKALEATNGTTLEKNGQILRVAYAKS 528
A AL N E NG+ + V Y+K+
Sbjct: 62 AKHALYNMNN--FELNGKRIHVNYSKT 86
>UNIPROTKB|Q5ZI72 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 EMBL:AJ720912 IPI:IPI00591109
RefSeq:NP_001026313.1 UniGene:Gga.4605 HSSP:Q14103
ProteinModelPortal:Q5ZI72 SMR:Q5ZI72 PRIDE:Q5ZI72
Ensembl:ENSGALT00000018235 GeneID:422601 KEGG:gga:422601 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 NextBio:20825211
Uniprot:Q5ZI72
Length = 301
Score = 80 (33.2 bits), Expect = 2.4e-07, Sum P(3) = 2.4e-07
Identities = 21/69 (30%), Positives = 32/69 (46%)
Query: 440 KGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSV 499
KG + P + V GL EE ++ F I+++ L D T+ RGF F+ +
Sbjct: 109 KGKE--PPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDE 166
Query: 500 EDASKALEA 508
E K LE+
Sbjct: 167 EPVKKLLES 175
Score = 79 (32.9 bits), Expect = 2.4e-07, Sum P(3) = 2.4e-07
Identities = 19/75 (25%), Positives = 40/75 (53%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
G + + GLS T+++DL + L+ +G + + + +G SRGF F+ F + +++
Sbjct: 30 GKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLE 89
Query: 347 RIGD--DGLVVDGRK 359
DG ++D ++
Sbjct: 90 LKEHKLDGKLIDPKR 104
Score = 79 (32.9 bits), Expect = 2.4e-07, Sum P(3) = 2.4e-07
Identities = 27/97 (27%), Positives = 37/97 (38%)
Query: 566 PKEYNPDDKQPTRGQEQRSDGDMVQKDGLALQSGFVWDEASGYYYDAASGFYYDGNTGLY 625
PKE +Q +G + + G G G W++ YYD G Y +
Sbjct: 192 PKEVYRQQQQQQKGGKSNASGGRGGGRGRGRGQGQNWNQGFNNYYDQGYGNYNSAYSDQS 251
Query: 626 YDGNSGIWYS-YDQQTQQYIP-CTDQNDNK-TSGNGS 659
Y G G YS Y+ Y P TD + + T G S
Sbjct: 252 YSGYGGYDYSGYNYPNYGYGPGYTDYSGQQSTYGKAS 288
>TAIR|locus:2083810 [details] [associations]
symbol:PSRP2 "plastid-specific ribosomal protein 2"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009773
"photosynthetic electron transport in photosystem I" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0045036 "protein
targeting to chloroplast" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0009941 GO:GO:0003676 GO:GO:0009535 KO:K13126 HSSP:Q61474
EMBL:AY070427 EMBL:AY133746 IPI:IPI00523226 RefSeq:NP_001030841.1
RefSeq:NP_566958.3 UniGene:At.3215 ProteinModelPortal:Q8VYM4
SMR:Q8VYM4 STRING:Q8VYM4 PRIDE:Q8VYM4 ProMEX:Q8VYM4
EnsemblPlants:AT3G52150.1 EnsemblPlants:AT3G52150.2 GeneID:824379
KEGG:ath:AT3G52150 TAIR:At3g52150 InParanoid:Q8VYM4 OMA:AEVMYDK
PhylomeDB:Q8VYM4 ProtClustDB:CLSN2918324 ArrayExpress:Q8VYM4
Genevestigator:Q8VYM4 Uniprot:Q8VYM4
Length = 253
Score = 104 (41.7 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 24/84 (28%), Positives = 46/84 (54%)
Query: 289 IVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRI 348
+ + + + T E L +++ E G + V+V+ ++ SG SR F F SV A A+++++
Sbjct: 78 VYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKL 137
Query: 349 GDDGLVVDGRKLFFEYSSKPTGGS 372
+G V+GR++ + KP S
Sbjct: 138 --NGNTVEGREIKVNITEKPIASS 159
Score = 89 (36.4 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 26/72 (36%), Positives = 36/72 (50%)
Query: 452 VRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNG 511
V L + +EML FS+ + ++ R T S GF F+ F S ED A+ A N
Sbjct: 181 VGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNN 240
Query: 512 TTLEKNGQILRV 523
+ LE GQ +RV
Sbjct: 241 SLLE--GQKIRV 250
>WB|WBGene00004723 [details] [associations]
symbol:sap-49 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0040022 "feminization of hermaphroditic germ-line"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0005681
GO:GO:0003723 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281 EMBL:Z46676
GO:GO:0040020 NextBio:883379 GO:GO:0040022 eggNOG:COG0724
GeneTree:ENSGT00690000101901 PIR:T19069 RefSeq:NP_001021932.1
ProteinModelPortal:Q09442 SMR:Q09442 IntAct:Q09442 STRING:Q09442
PaxDb:Q09442 EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2
GeneID:4363023 KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
Uniprot:Q09442
Length = 388
Score = 110 (43.8 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 32/89 (35%), Positives = 48/89 (53%)
Query: 439 KKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDL-RLVRDKFTHVSRGFAFLHFH 497
+K D G + V LD DE++L FS I + +++RD + S+GFAF++F
Sbjct: 93 EKNMDVGAN--IFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFA 150
Query: 498 SVEDASKALEATNGTTLEKNGQILRVAYA 526
S E + ALEA NG L + + V+YA
Sbjct: 151 SFEASDTALEAMNGQFL--CNRAITVSYA 177
Score = 89 (36.4 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 17/48 (35%), Positives = 31/48 (64%)
Query: 288 TIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDF 335
TI V GL +K +E L++++ + GP+ V + K+R + +GF F++F
Sbjct: 14 TIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEF 61
>UNIPROTKB|Q09442 [details] [associations]
symbol:sap-49 "Splicing factor 3B subunit 4" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011
GO:GO:0005681 GO:GO:0003723 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 EMBL:Z46676 GO:GO:0040020 NextBio:883379
GO:GO:0040022 eggNOG:COG0724 GeneTree:ENSGT00690000101901
PIR:T19069 RefSeq:NP_001021932.1 ProteinModelPortal:Q09442
SMR:Q09442 IntAct:Q09442 STRING:Q09442 PaxDb:Q09442
EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2 GeneID:4363023
KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
Uniprot:Q09442
Length = 388
Score = 110 (43.8 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 32/89 (35%), Positives = 48/89 (53%)
Query: 439 KKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDL-RLVRDKFTHVSRGFAFLHFH 497
+K D G + V LD DE++L FS I + +++RD + S+GFAF++F
Sbjct: 93 EKNMDVGAN--IFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFA 150
Query: 498 SVEDASKALEATNGTTLEKNGQILRVAYA 526
S E + ALEA NG L + + V+YA
Sbjct: 151 SFEASDTALEAMNGQFL--CNRAITVSYA 177
Score = 89 (36.4 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 17/48 (35%), Positives = 31/48 (64%)
Query: 288 TIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDF 335
TI V GL +K +E L++++ + GP+ V + K+R + +GF F++F
Sbjct: 14 TIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEF 61
>UNIPROTKB|P60826 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
CTD:1153 Uniprot:P60826
Length = 172
Score = 130 (50.8 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 32/97 (32%), Positives = 53/97 (54%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
G + V GLS T E+ L Q+ +++G + V V+K+R + SRGF F+ F ++ A+ M
Sbjct: 6 GKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM- 64
Query: 347 RIGDDGLVVDGRKLFFEYSSKPTGGSGGHYGQESAMG 383
+ +G VDGR++ + + K + Y SA G
Sbjct: 65 -MAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGG 100
Score = 126 (49.4 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 32/85 (37%), Positives = 50/85 (58%)
Query: 442 SDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVED 501
SD G L V GL +E+ L FSK+ I ++ +V+D+ T SRGF F+ F +++D
Sbjct: 3 SDEGK---LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 502 ASKALEATNGTTLEKNGQILRVAYA 526
A A+ A NG +++ G+ +RV A
Sbjct: 60 AKDAMMAMNGKSVD--GRQIRVDQA 82
>MGI|MGI:893588 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
"negative regulation of translation" evidence=IDA] [GO:0030371
"translation repressor activity" evidence=IDA] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
GermOnline:ENSMUSG00000045193 Uniprot:P60824
Length = 172
Score = 130 (50.8 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 32/97 (32%), Positives = 53/97 (54%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
G + V GLS T E+ L Q+ +++G + V V+K+R + SRGF F+ F ++ A+ M
Sbjct: 6 GKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM- 64
Query: 347 RIGDDGLVVDGRKLFFEYSSKPTGGSGGHYGQESAMG 383
+ +G VDGR++ + + K + Y SA G
Sbjct: 65 -MAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGG 100
Score = 126 (49.4 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 32/85 (37%), Positives = 50/85 (58%)
Query: 442 SDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVED 501
SD G L V GL +E+ L FSK+ I ++ +V+D+ T SRGF F+ F +++D
Sbjct: 3 SDEGK---LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 502 ASKALEATNGTTLEKNGQILRVAYA 526
A A+ A NG +++ G+ +RV A
Sbjct: 60 AKDAMMAMNGKSVD--GRQIRVDQA 82
>RGD|620756 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030371 "translation repressor activity" evidence=ISO;ISS]
[GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
"positive regulation of translation" evidence=ISO;ISS] [GO:0048255
"mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
Length = 172
Score = 130 (50.8 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 32/97 (32%), Positives = 53/97 (54%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
G + V GLS T E+ L Q+ +++G + V V+K+R + SRGF F+ F ++ A+ M
Sbjct: 6 GKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM- 64
Query: 347 RIGDDGLVVDGRKLFFEYSSKPTGGSGGHYGQESAMG 383
+ +G VDGR++ + + K + Y SA G
Sbjct: 65 -MAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGG 100
Score = 126 (49.4 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 32/85 (37%), Positives = 50/85 (58%)
Query: 442 SDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVED 501
SD G L V GL +E+ L FSK+ I ++ +V+D+ T SRGF F+ F +++D
Sbjct: 3 SDEGK---LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 502 ASKALEATNGTTLEKNGQILRVAYA 526
A A+ A NG +++ G+ +RV A
Sbjct: 60 AKDAMMAMNGKSVD--GRQIRVDQA 82
>ASPGD|ASPL0000076731 [details] [associations]
symbol:AN4865 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
Length = 524
Score = 121 (47.7 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 33/110 (30%), Positives = 56/110 (50%)
Query: 286 SGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMM 345
S + V LS TEE L+Q ++G L R++ ER++G SRGF +++F + A
Sbjct: 276 SANLFVGNLSWNVTEEWLHQEFEQFGELS-ARIMTERDTGRSRGFGYVEFTNAADAAKAY 334
Query: 346 DRIGDDGLVVDGRKLFFEYSS-KPTGGSGGHYGQESAMGARHSNHKSTIP 394
+ + + +DGRK+ +Y++ +P G + +E A S T P
Sbjct: 335 EAMKEHE--IDGRKINLDYATGRPANKDQGGF-KERAQNRARSFGDQTSP 381
Score = 81 (33.6 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 22/87 (25%), Positives = 42/87 (48%)
Query: 441 GSDTGP-THVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSV 499
G T P + L V L A+E+ + F + +RL D + +GF ++ + SV
Sbjct: 376 GDQTSPESDTLFVGNLPFSANEDSVHEVFGPQGNVLGIRLPTDMESGRPKGFGYVQYSSV 435
Query: 500 EDASKALEATNGTTLEKNGQILRVAYA 526
++A KA G ++ G+ +R+ ++
Sbjct: 436 DEARKAYNELQGAEID--GRPIRLDFS 460
>MGI|MGI:107914 [details] [associations]
symbol:Tia1 "cytotoxic granule-associated RNA binding protein
1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0017091 "AU-rich element binding"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IMP] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IMP] [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107914 GO:GO:0005634 GO:GO:0006915 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 GO:GO:0010494 eggNOG:COG0724 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:U00689
EMBL:U55862 IPI:IPI00132462 PIR:S72435 RefSeq:NP_035715.1
UniGene:Mm.333219 PDB:2DGO PDB:2RNE PDBsum:2DGO PDBsum:2RNE
ProteinModelPortal:P52912 SMR:P52912 STRING:P52912
PhosphoSite:P52912 PaxDb:P52912 PRIDE:P52912
Ensembl:ENSMUST00000095753 GeneID:21841 KEGG:mmu:21841
InParanoid:P52912 OMA:TSAPWMG EvolutionaryTrace:P52912
NextBio:301304 Bgee:P52912 Genevestigator:P52912
GermOnline:ENSMUSG00000071337 Uniprot:P52912
Length = 386
Score = 102 (41.0 bits), Expect = 2.8e-07, Sum P(3) = 2.8e-07
Identities = 33/111 (29%), Positives = 56/111 (50%)
Query: 425 PPAEMNS--SNPIPLG--KKGSDTGPTHVLVV-RGLDEYADEEMLRYEFSKHAPIKDLRL 479
PPA ++ SN L + S + P + V G+ E+++R FS I ++R+
Sbjct: 186 PPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRV 245
Query: 480 VRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYAKSIL 530
DK G++F+ F S E A+ A+ + NGTT+E G +++ + K L
Sbjct: 246 FPDK------GYSFVRFSSHESAAHAIVSVNGTTIE--GHVVKCYWGKETL 288
Score = 89 (36.4 bits), Expect = 2.8e-07, Sum P(3) = 2.8e-07
Identities = 23/81 (28%), Positives = 44/81 (54%)
Query: 289 IVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRI 348
+ V LS + T ED+ A +G + RV+K+ +G S+G+ F+ F + A + ++
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 349 GDDGLVVDGRKLFFEYSS-KP 368
G G + GR++ +++ KP
Sbjct: 168 G--GQWLGGRQIRTNWATRKP 186
Score = 63 (27.2 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 18/82 (21%), Positives = 45/82 (54%)
Query: 288 TIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDR 347
T+ V LS+ TE + Q+ ++ GP ++ ++I + +G + + F++F A A +
Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD-TAG-NDPYCFVEFHEHRHAAAALAA 65
Query: 348 IGDDGLVVDGRKLFFEYSSKPT 369
+ +G + G+++ +++ P+
Sbjct: 66 M--NGRKIMGKEVKVNWATTPS 85
Score = 49 (22.3 bits), Expect = 2.8e-07, Sum P(3) = 2.8e-07
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 628 GNSGIWYSYDQQTQQYIP 645
G G WY QQ QY+P
Sbjct: 307 GQWGQWYGNAQQIGQYVP 324
Score = 37 (18.1 bits), Expect = 4.4e-06, Sum P(3) = 4.4e-06
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 993 GKDGSGMIEPVQAQ 1006
GK+ MI PVQ Q
Sbjct: 284 GKETLDMINPVQQQ 297
>UNIPROTKB|Q5JQF3 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 EMBL:AL662874 UniGene:Hs.246590 HGNC:HGNC:13629
IPI:IPI00647470 SMR:Q5JQF3 STRING:Q5JQF3 Ensembl:ENST00000373105
HOGENOM:HOG000138175 OrthoDB:EOG4X3H3C Uniprot:Q5JQF3
Length = 218
Score = 103 (41.3 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 25/80 (31%), Positives = 45/80 (56%)
Query: 289 IVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAA-RAMMDR 347
+ VK + +E L ++ E+GP V+VI++ SG S+GF F+ + + AA +A++D
Sbjct: 37 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 95
Query: 348 IGDDGLVVDGRKLFFEYSSK 367
G +DG+ L+ + K
Sbjct: 96 HGKS---IDGKVLYVGRAQK 112
Score = 86 (35.3 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 19/62 (30%), Positives = 35/62 (56%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
+ ++ LDE ++E L+ EFS I +++ + +GF + F S E+A+KA++
Sbjct: 140 IYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEM 197
Query: 510 NG 511
NG
Sbjct: 198 NG 199
>RGD|1305742 [details] [associations]
symbol:Tia1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA;ISO] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO] [GO:0017148 "negative regulation of
translation" evidence=IEA;ISO] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA;ISO] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CH473957 eggNOG:COG0724
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 EMBL:BC087064 IPI:IPI00563419
RefSeq:NP_001012096.1 UniGene:Rn.198158 SMR:Q5PQR7 STRING:Q5PQR7
Ensembl:ENSRNOT00000023103 GeneID:312510 KEGG:rno:312510
UCSC:RGD:1305742 NextBio:664964 Genevestigator:Q5PQR7
Uniprot:Q5PQR7
Length = 375
Score = 101 (40.6 bits), Expect = 3.2e-07, Sum P(3) = 3.2e-07
Identities = 33/111 (29%), Positives = 56/111 (50%)
Query: 425 PPAEMNS--SNPIPLG--KKGSDTGPTHVLVV-RGLDEYADEEMLRYEFSKHAPIKDLRL 479
PPA ++ SN L + S + P + V G+ E+++R FS I ++R+
Sbjct: 175 PPAPKSTYESNTKQLSYDEVVSQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRV 234
Query: 480 VRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYAKSIL 530
DK G++F+ F S E A+ A+ + NGTT+E G +++ + K L
Sbjct: 235 FPDK------GYSFIRFSSHESAAHAIVSVNGTTIE--GHVVKCYWGKETL 277
Score = 89 (36.4 bits), Expect = 3.2e-07, Sum P(3) = 3.2e-07
Identities = 23/81 (28%), Positives = 44/81 (54%)
Query: 289 IVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRI 348
+ V LS + T ED+ A +G + RV+K+ +G S+G+ F+ F + A + ++
Sbjct: 97 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 156
Query: 349 GDDGLVVDGRKLFFEYSS-KP 368
G G + GR++ +++ KP
Sbjct: 157 G--GQWLGGRQIRTNWATRKP 175
Score = 63 (27.2 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 18/82 (21%), Positives = 45/82 (54%)
Query: 288 TIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDR 347
T+ V LS+ TE + Q+ ++ GP ++ ++I + +G + + F++F A A +
Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD-TAG-NDPYCFVEFHEHRHAAAALAA 65
Query: 348 IGDDGLVVDGRKLFFEYSSKPT 369
+ +G + G+++ +++ P+
Sbjct: 66 M--NGRKIMGKEVKVNWATTPS 85
Score = 49 (22.3 bits), Expect = 3.2e-07, Sum P(3) = 3.2e-07
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 628 GNSGIWYSYDQQTQQYIP 645
G G WY QQ QY+P
Sbjct: 296 GQWGQWYGNAQQIGQYVP 313
Score = 37 (18.1 bits), Expect = 5.0e-06, Sum P(3) = 5.0e-06
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 993 GKDGSGMIEPVQAQ 1006
GK+ MI PVQ Q
Sbjct: 273 GKETLDMINPVQQQ 286
>TAIR|locus:2049359 [details] [associations]
symbol:GRP7 "AT2G21660" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0009409 "response
to cold" evidence=IGI;IEP] [GO:0009414 "response to water
deprivation" evidence=IEP] [GO:0009651 "response to salt stress"
evidence=IEP;RCA] [GO:0046686 "response to cadmium ion"
evidence=IEP;RCA] [GO:0010501 "RNA secondary structure unwinding"
evidence=IDA] [GO:0032508 "DNA duplex unwinding" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IMP;IDA] [GO:0005777
"peroxisome" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0010119 "regulation of stomatal movement"
evidence=IMP] [GO:0009507 "chloroplast" evidence=IDA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA;IMP] [GO:0010043 "response to zinc ion" evidence=IEP]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0048046 "apoplast" evidence=IDA] [GO:0006094
"gluconeogenesis" evidence=RCA] [GO:0006096 "glycolysis"
evidence=RCA] [GO:0006833 "water transport" evidence=RCA]
[GO:0006972 "hyperosmotic response" evidence=RCA] [GO:0007030
"Golgi organization" evidence=RCA] [GO:0007623 "circadian rhythm"
evidence=IEP;RCA;TAS] [GO:0009266 "response to temperature
stimulus" evidence=RCA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0009506 GO:GO:0005634
GO:GO:0009507 GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0005777 GO:GO:0010119 GO:GO:0000166 GO:GO:0010043
GO:GO:0048046 GO:GO:0007623 GO:GO:0009651 GO:GO:0009409
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003690
GO:GO:0003697 GO:GO:0006406 GO:GO:0010228 eggNOG:COG0724
GO:GO:0000380 HOGENOM:HOG000276232 GO:GO:0010501 GO:GO:0032508
EMBL:AC007119 UniGene:At.22672 UniGene:At.23628 EMBL:Z14987
EMBL:L00648 EMBL:L04172 EMBL:AF428381 EMBL:AY054284 EMBL:AY042826
EMBL:AY072523 EMBL:AK318968 EMBL:AY085214 IPI:IPI00523161
IPI:IPI00542675 PIR:S30147 RefSeq:NP_179760.1 UniGene:At.24279
UniGene:At.72988 ProteinModelPortal:Q03250 SMR:Q03250 IntAct:Q03250
MINT:MINT-1163877 STRING:Q03250 PaxDb:Q03250 PRIDE:Q03250
ProMEX:Q03250 EnsemblPlants:AT2G21660.1 GeneID:816705
KEGG:ath:AT2G21660 TAIR:At2g21660 InParanoid:Q03250 OMA:SQHEDGH
ProtClustDB:CLSN2913158 Genevestigator:Q03250 Uniprot:Q03250
Length = 176
Score = 129 (50.5 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 33/89 (37%), Positives = 49/89 (55%)
Query: 291 VKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRI-G 349
V GL+ T + L A++G + ++I +R +G SRGF F+ F +AM D I G
Sbjct: 12 VGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKD---EKAMKDAIEG 68
Query: 350 DDGLVVDGRKLFF-EYSSKPTGGSGGHYG 377
+G +DGR + E S+ +GG GGH G
Sbjct: 69 MNGQDLDGRSITVNEAQSRGSGGGGGHRG 97
>UNIPROTKB|D4A6U8 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 GO:GO:0048024
OrthoDB:EOG4B5P59 IPI:IPI00778030 ProteinModelPortal:D4A6U8
Ensembl:ENSRNOT00000041366 Uniprot:D4A6U8
Length = 382
Score = 101 (40.6 bits), Expect = 3.5e-07, Sum P(3) = 3.5e-07
Identities = 33/111 (29%), Positives = 56/111 (50%)
Query: 425 PPAEMNS--SNPIPLG--KKGSDTGPTHVLVV-RGLDEYADEEMLRYEFSKHAPIKDLRL 479
PPA ++ SN L + S + P + V G+ E+++R FS I ++R+
Sbjct: 182 PPAPKSTYESNTKQLSYDEVVSQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRV 241
Query: 480 VRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYAKSIL 530
DK G++F+ F S E A+ A+ + NGTT+E G +++ + K L
Sbjct: 242 FPDK------GYSFIRFSSHESAAHAIVSVNGTTIE--GHVVKCYWGKETL 284
Score = 89 (36.4 bits), Expect = 3.5e-07, Sum P(3) = 3.5e-07
Identities = 23/81 (28%), Positives = 44/81 (54%)
Query: 289 IVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRI 348
+ V LS + T ED+ A +G + RV+K+ +G S+G+ F+ F + A + ++
Sbjct: 104 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 163
Query: 349 GDDGLVVDGRKLFFEYSS-KP 368
G G + GR++ +++ KP
Sbjct: 164 G--GQWLGGRQIRTNWATRKP 182
Score = 63 (27.2 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 18/82 (21%), Positives = 45/82 (54%)
Query: 288 TIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDR 347
T+ V LS+ TE + Q+ ++ GP ++ ++I + +G + + F++F A A +
Sbjct: 4 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD-TAG-NDPYCFVEFHEHRHAAAALAA 61
Query: 348 IGDDGLVVDGRKLFFEYSSKPT 369
+ +G + G+++ +++ P+
Sbjct: 62 M--NGRKIMGKEVKVNWATTPS 81
Score = 49 (22.3 bits), Expect = 3.5e-07, Sum P(3) = 3.5e-07
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 628 GNSGIWYSYDQQTQQYIP 645
G G WY QQ QY+P
Sbjct: 303 GQWGQWYGNAQQIGQYVP 320
Score = 37 (18.1 bits), Expect = 5.4e-06, Sum P(3) = 5.4e-06
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 993 GKDGSGMIEPVQAQ 1006
GK+ MI PVQ Q
Sbjct: 280 GKETLDMINPVQQQ 293
>UNIPROTKB|Q92804 [details] [associations]
symbol:TAF15 "TATA-binding protein-associated factor 2N"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR000504 InterPro:IPR001876 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00641 PROSITE:PS01358 PROSITE:PS50102
PROSITE:PS50199 SMART:SM00360 SMART:SM00547 GO:GO:0005634
GO:GO:0005737 GO:GO:0045893 GO:GO:0000166 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471147 eggNOG:NOG240581 HOGENOM:HOG000038010 EMBL:AC015849
EMBL:U51334 EMBL:X98893 EMBL:AB010067 EMBL:AY197697 EMBL:AK313223
IPI:IPI00020194 IPI:IPI00294426 PIR:S71954 RefSeq:NP_003478.1
RefSeq:NP_631961.1 UniGene:Hs.402752 ProteinModelPortal:Q92804
SMR:Q92804 IntAct:Q92804 STRING:Q92804 PhosphoSite:Q92804
DMDM:8928305 PaxDb:Q92804 PRIDE:Q92804 DNASU:8148
Ensembl:ENST00000311979 GeneID:8148 KEGG:hsa:8148 UCSC:uc002hkc.3
UCSC:uc002hkd.3 CTD:8148 GeneCards:GC17P034136 HGNC:HGNC:11547
HPA:HPA052059 MIM:601574 neXtProt:NX_Q92804 PharmGKB:PA36322
HOVERGEN:HBG005755 InParanoid:Q92804 KO:K14651 OMA:YGNQGSQ
OrthoDB:EOG4MW872 PhylomeDB:Q92804 ChiTaRS:TAF15 GenomeRNAi:8148
NextBio:30819 PMAP-CutDB:Q92804 ArrayExpress:Q92804 Bgee:Q92804
CleanEx:HS_TAF15 Genevestigator:Q92804 GermOnline:ENSG00000172660
Uniprot:Q92804
Length = 592
Score = 138 (53.6 bits), Expect = 3.7e-07, Sum P(3) = 3.7e-07
Identities = 44/160 (27%), Positives = 77/160 (48%)
Query: 286 SGTIVVKGLSQKTTEEDLYQILAEWGPLRH--------VRVIKERNSGVSRGFAFIDFPS 337
+ TI V+GL + + + + + + G ++ + + ++++G +G A + F
Sbjct: 233 NNTIFVQGLGEGVSTDQVGEFFKQIGIIKTNKKTGKPMINLYTDKDTGKPKGEATVSFDD 292
Query: 338 VGAARAMMDRIGDDGLVVDGRKLFFEYSSK-PT----GGSGG-HYGQESAMGARHSNHKS 391
+A+A +D DG G + ++++ P GGSGG G+ G +
Sbjct: 293 PPSAKAAIDWF--DGKEFHGNIIKVSFATRRPEFMRGGGSGGGRRGRGGYRGRGGFQGRG 350
Query: 392 TIPC--DWMCT--ICGCVNFARRTSCFQCNEARTDDAPPA 427
P DW+C CG +NFARR SC QCNE R +D+ P+
Sbjct: 351 GDPKSGDWVCPNPSCGNMNFARRNSCNQCNEPRPEDSRPS 390
Score = 53 (23.7 bits), Expect = 3.7e-07, Sum P(3) = 3.7e-07
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 599 GFVWDEASGYYYDAASGFYYDGNTGLYYDGNSGIWYSYDQ 638
G+ D + G Y SG Y G+ G Y G+ G Y D+
Sbjct: 436 GYSGDRSGGGYGGDRSGGGYGGDRGGGYGGDRGGGYGGDR 475
Score = 53 (23.7 bits), Expect = 3.7e-07, Sum P(3) = 3.7e-07
Identities = 33/138 (23%), Positives = 56/138 (40%)
Query: 7 GLQQGWDNNSALEGYGAIHE-PNFRVGGSYDERRFLDER---YSRDNIYPRNAFQRENYP 62
G QQ +++ + G ++ P++ SYD++ D+ Y + Y + Q ++Y
Sbjct: 87 GQQQNMESSGSQGGRAPSYDQPDYGQQDSYDQQSGYDQHQGSYDEQSNYDQ---QHDSYS 143
Query: 63 PPPVGLWPQSRRRNYEEDYSLDRE--SRRHE--KPYIDSYHEMDAYCGHEIDSF-PEFDK 117
S+R NY DR SR E + Y S G++ D P
Sbjct: 144 QNQQSY--HSQRENYSHHTQDDRRDVSRYGEDNRGYGGSQGGGRGRGGYDKDGRGPMTGS 201
Query: 118 F---RDGYRNIENYRDHG 132
R G++N +RD+G
Sbjct: 202 SGGDRGGFKNFGGHRDYG 219
Score = 51 (23.0 bits), Expect = 5.8e-07, Sum P(3) = 5.8e-07
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 598 SGFVWDEASGYYYDAASGFYYDGNTGLYYDGNSG 631
SG+ D + GY D + G Y G+ G Y G+ G
Sbjct: 539 SGYGGDRSGGYGGDRSGGGY-GGDRGGGYGGDRG 571
Score = 43 (20.2 bits), Expect = 3.7e-06, Sum P(3) = 3.7e-06
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 599 GFVWDEASGYYY-DAASGFYYDGNTGLYYDGNSGIWYSYDQ 638
G+ D + G Y D G Y G+ G Y G+ G Y D+
Sbjct: 445 GYGGDRSGGGYGGDRGGG--YGGDRGGGYGGDRGGGYGGDR 483
>ZFIN|ZDB-GENE-040426-1391 [details] [associations]
symbol:tra2a "transformer-2 alpha" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1391 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00700000104309 HSSP:P52298 CTD:29896
HOVERGEN:HBG102125 KO:K12897 OMA:DRYEEYD OrthoDB:EOG4BVRW2
EMBL:BX469899 EMBL:BC054632 IPI:IPI00510581 RefSeq:NP_956710.1
UniGene:Dr.75585 SMR:Q7T2A0 STRING:Q7T2A0
Ensembl:ENSDART00000008595 GeneID:393388 KEGG:dre:393388
InParanoid:Q7T2A0 NextBio:20814435 Uniprot:Q7T2A0
Length = 297
Score = 147 (56.8 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 40/120 (33%), Positives = 64/120 (53%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
P+ + V GLS TTE DL ++ + +G L V V+ ++ +G SRGFAF+ F + A+
Sbjct: 133 PNTCLGVFGLSLYTTERDLREVFSRYGSLAGVNVVYDQRTGRSRGFAFVYFEHIDDAKEA 192
Query: 345 MDRIGDDGLVVDGRKLFFEYS--------------SKPT-GGSGGHYGQESAMGARHSNH 389
M+R +G+ +DGR++ +YS +PT G GG G S+ G R ++
Sbjct: 193 MERA--NGMELDGRRIRVDYSITKRPHTPTPGIYMGRPTHNGGGGGGGGSSSGGRRRDSY 250
Score = 142 (55.0 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 33/89 (37%), Positives = 52/89 (58%)
Query: 438 GKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFH 497
G ++ P L V GL Y E LR FS++ + + +V D+ T SRGFAF++F
Sbjct: 125 GDARANPDPNTCLGVFGLSLYTTERDLREVFSRYGSLAGVNVVYDQRTGRSRGFAFVYFE 184
Query: 498 SVEDASKALEATNGTTLEKNGQILRVAYA 526
++DA +A+E NG +E +G+ +RV Y+
Sbjct: 185 HIDDAKEAMERANG--MELDGRRIRVDYS 211
>UNIPROTKB|Q2KF84 [details] [associations]
symbol:MGCH7_ch7g802 "Putative uncharacterized protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000467
InterPro:IPR000504 InterPro:IPR001876 InterPro:IPR012677
InterPro:IPR015880 Pfam:PF01585 PROSITE:PS01358 PROSITE:PS50174
PROSITE:PS50199 SMART:SM00355 SMART:SM00360 SMART:SM00443
SMART:SM00547 GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005622 EMBL:CM000230 ProteinModelPortal:Q2KF84
Uniprot:Q2KF84
Length = 803
Score = 103 (41.3 bits), Expect = 4.0e-07, Sum P(4) = 4.0e-07
Identities = 27/78 (34%), Positives = 38/78 (48%)
Query: 977 GNRMLRSMGWHEGLGLGKDGSGMIEPVQAQAMDSRAGLGSQQKKVDPSLEVQA----G-- 1030
G +L MGW G GLG DGSG E ++ + GLG++ KV + E + G
Sbjct: 700 GAALLSKMGWTAGQGLGADGSGRAEAIRTEMYRPGVGLGAEGGKVGDAAEAASRNTKGVY 759
Query: 1031 DSYKTLIHKKALARFREM 1048
D + + KA R+R M
Sbjct: 760 DDFVKVTKDKARERYRAM 777
Score = 96 (38.9 bits), Expect = 4.0e-07, Sum P(4) = 4.0e-07
Identities = 25/78 (32%), Positives = 38/78 (48%)
Query: 397 WMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKGSDTGPTHV----LVV 452
W C C VN++RR +C++C D + + PI G+ +D P H+ LVV
Sbjct: 200 WTCAHCSGVNYSRRVACYKCGREEDD-------SGTGPILTGE--TDEAPAHLPSQYLVV 250
Query: 453 RGLDEYADEEMLRYEFSK 470
R L+ EE+L +K
Sbjct: 251 RDLEGSITEEVLAKGITK 268
Score = 73 (30.8 bits), Expect = 0.00019, Sum P(3) = 0.00019
Identities = 33/153 (21%), Positives = 64/153 (41%)
Query: 888 PPATQKEQPQTTYRDRAAERRSLYGSSFSAGDDLPDVGSGDSNRDFALKKGSVDSMPFPP 947
P + ++ YRDRA ERR +G S A G +D K+ + P
Sbjct: 644 PIQMRPKESGNQYRDRARERRKAFGPSTKAKS-----GQNQPKKDGGKKEEAAPKEKQP- 697
Query: 948 GVGGRGFTADSVQSYEVITADKAIDENNVGN-RMLRSMGWHEGLGLGKDGSGMIEPVQAQ 1006
+G S + TA + + + G +R+ + G+GLG +G + + +A
Sbjct: 698 ---SKGAALLSKMGW---TAGQGLGADGSGRAEAIRTEMYRPGVGLGAEGGKVGDAAEAA 751
Query: 1007 AMDSRAGLGSQQKKVDPSLEVQAGDSYKTLIHK 1039
+ +++ G+ KV +A + Y+ ++ +
Sbjct: 752 SRNTK-GVYDDFVKVTKD---KARERYRAMVER 780
Score = 55 (24.4 bits), Expect = 4.0e-07, Sum P(4) = 4.0e-07
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 469 SKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKA 505
+K ++ + L+RD+ T+ S + F F ++EDA A
Sbjct: 301 AKPGSLRRVFLMRDRRTNESWRYGFAEFRTLEDAQAA 337
Score = 38 (18.4 bits), Expect = 4.0e-07, Sum P(4) = 4.0e-07
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 563 GWAPKEYNPDDKQPTRG 579
G +E P +KQP++G
Sbjct: 684 GGKKEEAAPKEKQPSKG 700
>UNIPROTKB|F1NCV5 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104347 OMA:QHPPADN
EMBL:AADN02009038 EMBL:AADN02009039 IPI:IPI00822447
Ensembl:ENSGALT00000038016 Uniprot:F1NCV5
Length = 338
Score = 80 (33.2 bits), Expect = 4.0e-07, Sum P(3) = 4.0e-07
Identities = 21/69 (30%), Positives = 32/69 (46%)
Query: 440 KGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSV 499
KG + P + V GL EE ++ F I+++ L D T+ RGF F+ +
Sbjct: 145 KGKE--PPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDE 202
Query: 500 EDASKALEA 508
E K LE+
Sbjct: 203 EPVKKLLES 211
Score = 79 (32.9 bits), Expect = 4.0e-07, Sum P(3) = 4.0e-07
Identities = 19/75 (25%), Positives = 40/75 (53%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
G + + GLS T+++DL + L+ +G + + + +G SRGF F+ F + +++
Sbjct: 66 GKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLE 125
Query: 347 RIGD--DGLVVDGRK 359
DG ++D ++
Sbjct: 126 LKEHKLDGKLIDPKR 140
Score = 79 (32.9 bits), Expect = 4.0e-07, Sum P(3) = 4.0e-07
Identities = 26/95 (27%), Positives = 36/95 (37%)
Query: 566 PKEYNPDDKQPTRGQEQRSDGDMVQKDGLALQSGFVWDEASGYYYDAASGFYYDGNTGLY 625
PKE +Q +G + + G G G W++ YYD G Y +
Sbjct: 228 PKEVYRQQQQQQKGGKSNASGGRGGGRGRGRGQGQNWNQGFNNYYDQGYGNYNSAYSDQS 287
Query: 626 YDGNSGIWYS-YDQQTQQYIP-CTDQNDNKTSGNG 658
Y G G YS Y+ Y P TD + + S G
Sbjct: 288 YSGYGGYDYSGYNYPNYGYGPGYTDYSAGQQSTYG 322
>TAIR|locus:2077137 [details] [associations]
symbol:AT3G46020 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL162459 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q61474 EMBL:BT012586 EMBL:BT015095
IPI:IPI00521590 RefSeq:NP_190188.1 UniGene:At.35968
ProteinModelPortal:Q9LZT1 SMR:Q9LZT1 EnsemblPlants:AT3G46020.1
GeneID:823745 KEGG:ath:AT3G46020 TAIR:At3g46020 InParanoid:Q9LZT1
OMA:QIKEARL PhylomeDB:Q9LZT1 ProtClustDB:CLSN2915511
Genevestigator:Q9LZT1 Uniprot:Q9LZT1
Length = 102
Score = 128 (50.1 bits), Expect = 4.2e-07, P = 4.2e-07
Identities = 30/79 (37%), Positives = 46/79 (58%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
L V L Y ++ LR FS IK+ RL+RD T +GF F+ F S +DA KAL++
Sbjct: 9 LFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSL 68
Query: 510 NGTTLEKNGQILRVAYAKS 528
+G ++ G+++ V AK+
Sbjct: 69 DGKIVD--GRLIFVEVAKN 85
Score = 121 (47.7 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 27/78 (34%), Positives = 44/78 (56%)
Query: 286 SGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMM 345
S + V LS TT++ L Q+ + +G ++ R+I++ + +GF FI F S AR +
Sbjct: 6 SAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL 65
Query: 346 DRIGDDGLVVDGRKLFFE 363
+ DG +VDGR +F E
Sbjct: 66 KSL--DGKIVDGRLIFVE 81
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 106 (42.4 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 26/65 (40%), Positives = 39/65 (60%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
L V+ LD+ D+E LR EFS + I +++ + H S+GF F+ F S E+A+KA+
Sbjct: 296 LYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEG-GH-SKGFGFVCFSSPEEATKAVTEM 353
Query: 510 NGTTL 514
NG L
Sbjct: 354 NGRIL 358
Score = 103 (41.3 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 27/78 (34%), Positives = 45/78 (57%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
+ V+ L DE+ L+ FS+ + ++++RD H SRGF F++F E+A KA+
Sbjct: 193 IYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDDSGH-SRGFGFVNFQKHEEAQKAVMDM 251
Query: 510 NGTTLEKNGQILRVAYAK 527
NG E +G++L V A+
Sbjct: 252 NGK--EVSGRLLYVGRAQ 267
Score = 97 (39.2 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 27/80 (33%), Positives = 44/80 (55%)
Query: 289 IVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPS-VGAARAMMDR 347
I VK L E+ L + + +G + V+V+++ +SG SRGF F++F A +A+MD
Sbjct: 193 IYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRD-DSGHSRGFGFVNFQKHEEAQKAVMDM 251
Query: 348 IGDDGLVVDGRKLFFEYSSK 367
G + V GR L+ + K
Sbjct: 252 NGKE---VSGRLLYVGRAQK 268
Score = 94 (38.1 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 26/79 (32%), Positives = 41/79 (51%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
+ ++ L++ D + L FS I ++V D H SRGF F+HF + E A +A+
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDD--HGSRGFGFVHFETHEAAQQAITTM 158
Query: 510 NGTTLEKNGQILRVAYAKS 528
NG L N + + V + KS
Sbjct: 159 NGMLL--NDRKVFVGHFKS 175
Score = 83 (34.3 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 22/86 (25%), Positives = 42/86 (48%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
P ++ V L TE LY+ + GP+ +RV ++ + S G+A+I+F A
Sbjct: 9 PLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERA 68
Query: 345 MDRIGDDGLVVDGRKLFFEYSSKPTG 370
+D + + V+ G+ + +S + G
Sbjct: 69 LDTMNFE--VIKGQPIRIMWSQRDPG 92
Score = 81 (33.6 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 20/75 (26%), Positives = 40/75 (53%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
G I +K L + LY + +G + +V+ + + SRGF F+ F + AA+ +
Sbjct: 99 GNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHG--SRGFGFVHFETHEAAQQAIT 156
Query: 347 RIGDDGLVVDGRKLF 361
+ +G++++ RK+F
Sbjct: 157 TM--NGMLLNDRKVF 169
>FB|FBgn0024987 [details] [associations]
symbol:ssx "sister-of-Sex-lethal" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0042742 "defense response to bacterium"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE014298 GO:GO:0042742
GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339 EMBL:AL023893
SMR:O76876 IntAct:O76876 MINT:MINT-315293 STRING:O76876
UCSC:CG3056-RA FlyBase:FBgn0024987 eggNOG:NOG321849
InParanoid:O76876 OrthoDB:EOG4M37RG NextBio:771866 Uniprot:O76876
Length = 485
Score = 103 (41.3 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 27/87 (31%), Positives = 45/87 (51%)
Query: 441 GSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVE 500
G T++ V+ L +++ML FS + I ++RDK T RG AF+ ++ E
Sbjct: 173 GQSIKDTNLYVIN-LSRNINDDMLDRIFSPYGLIVQRNILRDKLTGRPRGVAFVRYNKRE 231
Query: 501 DASKALEATNGTTLEKNGQILRVAYAK 527
+A +A++A N T E Q + V A+
Sbjct: 232 EAQEAIKALNNTVPEGGSQPIWVRLAE 258
Score = 97 (39.2 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 19/84 (22%), Positives = 46/84 (54%)
Query: 289 IVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRI 348
+++ L Q T+ +LY + + GP+ +++++ +G S G+ F+D+ + + + ++
Sbjct: 95 LIINYLPQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTESDSEDAIQKL 154
Query: 349 GDDGLVVDGRKLFFEYSSKPTGGS 372
+G V ++L Y+ +P G S
Sbjct: 155 --NGFYVRNKRLKVSYA-RPGGQS 175
>UNIPROTKB|E9PGM9 [details] [associations]
symbol:RBM6 "RNA-binding protein 6" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000467 InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR015880 Pfam:PF01585 PROSITE:PS50102 PROSITE:PS50174
SMART:SM00355 SMART:SM00360 SMART:SM00443 GO:GO:0005634
GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC105935 EMBL:AC104450 HGNC:HGNC:9903 ChiTaRS:RBM6
IPI:IPI00927608 ProteinModelPortal:E9PGM9 SMR:E9PGM9
Ensembl:ENST00000443081 ArrayExpress:E9PGM9 Bgee:E9PGM9
Uniprot:E9PGM9
Length = 991
Score = 96 (38.9 bits), Expect = 4.8e-07, Sum P(5) = 4.8e-07
Identities = 35/112 (31%), Positives = 55/112 (49%)
Query: 567 KEYNPDDKQPTRGQEQRSDGDMVQKDGLALQSG-FVWDEASGYYYDAASGFYYDGNTG-- 623
K+Y D + R + SD + G S +++D A+GYYYD +G YYD NT
Sbjct: 627 KKYFRDRRGGGRNSDWSSD---TNRQGQQSSSDCYIYDSATGYYYDPLAGTYYDPNTQQE 683
Query: 624 LYYDGNSGIWYSYDQQTQQYIPCTDQNDNKTSGNGSEPSKQVDGGSKNRKVV 675
+Y + G+ +++ ++ P T Q K+S E SK+ DG K + V
Sbjct: 684 VYVPQDPGL--PEEEEIKEKKP-TSQG--KSSSK-KEMSKR-DGKEKKDRGV 728
Score = 81 (33.6 bits), Expect = 4.8e-07, Sum P(5) = 4.8e-07
Identities = 24/90 (26%), Positives = 48/90 (53%)
Query: 442 SDTGPTHVLVVRGLDEYAD-EEMLR-YEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSV 499
S+ P+ ++ + G+ E A EE+L + P+K+L+L ++ T G+ + F +
Sbjct: 318 SEEKPSRLIRLSGVPEDATKEEILNAFRTPDGMPVKNLQL-KEYNTGYDYGYVCVEFSLL 376
Query: 500 EDASKALEATNGTTLEKNGQILRVAYAKSI 529
EDA +EA GT + ++ ++ + Y S+
Sbjct: 377 EDAIGCMEANQGTLMIQDKEVT-LEYVSSL 405
Score = 79 (32.9 bits), Expect = 4.8e-07, Sum P(5) = 4.8e-07
Identities = 19/82 (23%), Positives = 42/82 (51%)
Query: 968 DKA-IDENNVGNRMLRSMGWHEGLGLGKDGSGMIEPVQAQAMDSRAGLGSQQKKVDPSLE 1026
DK ID ++ G + ++ GW +G GLG G+ +A+ +G+ + + +
Sbjct: 913 DKEDIDTSSKGGCVQQATGWRKGTGLGYGHPGLASSEEAEGRMRGPSVGASGR----TSK 968
Query: 1027 VQAGDSYKTLIHKKALARFREM 1048
Q+ ++Y+ + + AR++E+
Sbjct: 969 RQSNETYRDAVRRVMFARYKEL 990
Score = 74 (31.1 bits), Expect = 2.2e-06, Sum P(5) = 2.2e-06
Identities = 25/95 (26%), Positives = 45/95 (47%)
Query: 286 SGTIVVKGLSQKTTEEDLYQILAEWGPLR--HVRVIKERNSGVSRGFAFIDFPSVGAARA 343
S TI++K + + T E + ++L + L +VR+IK R + + FID S A
Sbjct: 523 SKTIMLKRIYRSTPPEVIVEVLEPYVRLTTANVRIIKNRTGPMGHTYGFIDLDSHAEALR 582
Query: 344 MMDRIG--DDGLVVDGRKLFFEYSS-KPTGGSGGH 375
++ + D +DG+ + ++ K SG H
Sbjct: 583 VVKILQNLDPPFSIDGKMVAVNLATGKRRNDSGDH 617
Score = 68 (29.0 bits), Expect = 2.0e-06, Sum P(6) = 2.0e-06
Identities = 19/84 (22%), Positives = 43/84 (51%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILA--EWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAAR 342
PS I + G+ + T+E++ + P+++++ +KE N+G G+ ++F + A
Sbjct: 322 PSRLIRLSGVPEDATKEEILNAFRTPDGMPVKNLQ-LKEYNTGYDYGYVCVEFSLLEDAI 380
Query: 343 AMMDRIGDDGLVVDGRKLFFEYSS 366
M+ L++ +++ EY S
Sbjct: 381 GCMEA-NQGTLMIQDKEVTLEYVS 403
Score = 44 (20.5 bits), Expect = 2.0e-06, Sum P(6) = 2.0e-06
Identities = 15/51 (29%), Positives = 19/51 (37%)
Query: 397 WMCTICGCVNFARRTSCFQCNEAR-TDDAP------PAEMNSSNPIPLGKK 440
W C C R+SC C R +A P +S P PL K+
Sbjct: 408 WYCKRCKANIGGHRSSCSFCKNPREVTEAKQELITYPQPQKTSIPAPLEKQ 458
Score = 44 (20.5 bits), Expect = 0.00080, Sum P(4) = 0.00080
Identities = 16/51 (31%), Positives = 23/51 (45%)
Query: 864 SALGSYTPPVATGS---GKRRFSEMPLPPATQKEQPQTTYRDRAAERRSLY 911
+ LG P +A+ G+ R + T K Q TYRD A RR ++
Sbjct: 936 TGLGYGHPGLASSEEAEGRMRGPSVGASGRTSKRQSNETYRD--AVRRVMF 984
Score = 41 (19.5 bits), Expect = 4.8e-07, Sum P(5) = 4.8e-07
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 111 SFPEFDKFRDGYRNIEN--YRDHGFERPP 137
SFPE RD R++++ YR E P
Sbjct: 294 SFPEGKTARDAQRDLQDQDYRTGPSEEKP 322
Score = 41 (19.5 bits), Expect = 2.2e-06, Sum P(5) = 2.2e-06
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 57 QRENYPPPPVGLWPQSRRRNYEEDYSLDRESRRHEK 92
++ N P P P+ R+R ++ L + R E+
Sbjct: 457 KQPNQPLRPADKEPEPRKREEGQESRLGHQKREAER 492
Score = 38 (18.4 bits), Expect = 4.8e-07, Sum P(5) = 4.8e-07
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 886 PLPPATQKEQ 895
PLPP +KE+
Sbjct: 749 PLPPTVKKEE 758
Score = 37 (18.1 bits), Expect = 1.2e-06, Sum P(5) = 1.2e-06
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 123 RNIENYRDHGFERPPRFG 140
R E+ DH ERP FG
Sbjct: 180 RREESTHDHTIERPA-FG 196
>UNIPROTKB|F1NPM7 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0000398 GeneTree:ENSGT00700000104309
OMA:DRYEEYD EMBL:AADN02000941 EMBL:AADN02000942 IPI:IPI00590713
Ensembl:ENSGALT00000017877 Uniprot:F1NPM7
Length = 277
Score = 145 (56.1 bits), Expect = 5.1e-07, P = 5.1e-07
Identities = 30/81 (37%), Positives = 51/81 (62%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
P+ + V GLS TTE DL ++ + +GPL V V+ ++ +G SRGFAF+ F + ++
Sbjct: 119 PNTCLGVFGLSLYTTERDLREVFSRYGPLTGVNVVYDQRTGRSRGFAFVYFERIDDSKEA 178
Query: 345 MDRIGDDGLVVDGRKLFFEYS 365
M+ +G+ +DGR++ +YS
Sbjct: 179 MEHA--NGMELDGRRIRVDYS 197
Score = 144 (55.7 bits), Expect = 6.6e-07, P = 6.6e-07
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKA 505
P L V GL Y E LR FS++ P+ + +V D+ T SRGFAF++F ++D+ +A
Sbjct: 119 PNTCLGVFGLSLYTTERDLREVFSRYGPLTGVNVVYDQRTGRSRGFAFVYFERIDDSKEA 178
Query: 506 LEATNGTTLEKNGQILRVAYA 526
+E NG +E +G+ +RV Y+
Sbjct: 179 MEHANG--MELDGRRIRVDYS 197
>UNIPROTKB|H3BNY3 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
Length = 347
Score = 101 (40.6 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 452 VRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNG 511
++ E D+E L+ F K P ++++ D+ + S+GF F+ F EDA KA++ NG
Sbjct: 195 IKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 512 TTLEKNGQILRVAYAK 527
L NG+ + V A+
Sbjct: 254 KEL--NGKQIYVGRAQ 267
Score = 94 (38.1 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 22/82 (26%), Positives = 46/82 (56%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
G I VK L + + LY ++ +G + V+ + N S+G+ F+ F + AA +
Sbjct: 99 GNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG--SKGYGFVHFETHEAAERAIK 156
Query: 347 RIGDDGLVVDGRKLFF-EYSSK 367
++ +G++++GRK+F ++ S+
Sbjct: 157 KM--NGMLLNGRKVFVGQFKSR 176
Score = 79 (32.9 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 19/83 (22%), Positives = 41/83 (49%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
P+ ++ V L TE LY+ + GP+ +R+ ++ + S +A+++F A
Sbjct: 9 PTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHA 68
Query: 345 MDRIGDDGLVVDGRKLFFEYSSK 367
+D + D V+ G+ + +S +
Sbjct: 69 LDTMNFD--VIKGKPVRIMWSQR 89
Score = 73 (30.8 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDAS 503
L V+ LD+ D+E LR FS I +++ + S+GF F+ F S E+A+
Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEAT 347
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 127 (49.8 bits), Expect = 5.3e-07, P = 5.3e-07
Identities = 28/83 (33%), Positives = 49/83 (59%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
G + V GLS T E+ L Q+ +++G + V V+K+R + SRGF F+ F ++ A+ M
Sbjct: 6 GKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM- 64
Query: 347 RIGDDGLVVDGRKLFFEYSSKPT 369
+ +G VDGR++ + +P+
Sbjct: 65 -MAMNGKSVDGRQIRVDQPLRPS 86
Score = 125 (49.1 bits), Expect = 8.7e-07, P = 8.7e-07
Identities = 31/82 (37%), Positives = 49/82 (59%)
Query: 442 SDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVED 501
SD G L V GL +E+ L FSK+ I ++ +V+D+ T SRGF F+ F +++D
Sbjct: 3 SDEGK---LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 502 ASKALEATNGTTLEKNGQILRV 523
A A+ A NG +++ G+ +RV
Sbjct: 60 AKDAMMAMNGKSVD--GRQIRV 79
>UNIPROTKB|E1BC65 [details] [associations]
symbol:RBM6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000467 InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR015880 PROSITE:PS50102 PROSITE:PS50174 SMART:SM00355
SMART:SM00443 GO:GO:0005634 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00510000046476
OMA:YDLDFRG EMBL:DAAA02054416 EMBL:DAAA02054415 IPI:IPI00715714
Ensembl:ENSBTAT00000008300 Uniprot:E1BC65
Length = 1120
Score = 94 (38.1 bits), Expect = 6.0e-07, Sum P(5) = 6.0e-07
Identities = 22/57 (38%), Positives = 31/57 (54%)
Query: 567 KEYNPDDKQPTRGQEQRSDGDMVQKDGLALQSG-FVWDEASGYYYDAASGFYYDGNT 622
K+Y D + R + SD V + G S +++D A+GYYYD +G YYD NT
Sbjct: 756 KKYFRDRRGGGRNSDWSSD---VNRQGQQSSSDCYIYDSATGYYYDPLAGTYYDPNT 809
Score = 86 (35.3 bits), Expect = 3.9e-06, Sum P(5) = 3.9e-06
Identities = 21/63 (33%), Positives = 30/63 (47%)
Query: 608 YYYDAASGFYYDGNTGLYYDGNSGIWYSYDQQTQQYIPCTDQNDNKTSGNGSEPSKQVDG 667
Y YD+A+G+YYD G YYD N+ Q + Y+P + + +PS Q
Sbjct: 787 YIYDSATGYYYDPLAGTYYDPNT--------QQEVYVPQDPGSPEEEDIKEKKPSSQGKS 838
Query: 668 GSK 670
SK
Sbjct: 839 SSK 841
Score = 83 (34.3 bits), Expect = 6.0e-07, Sum P(5) = 6.0e-07
Identities = 25/90 (27%), Positives = 48/90 (53%)
Query: 442 SDTGPTHVLVVRGLDEYAD-EEMLRYEFSKHA-PIKDLRLVRDKFTHVSRGFAFLHFHSV 499
S+ P+ ++ + G+ E A EE+L ++ P+KDL+L ++ T G+ + F +
Sbjct: 450 SEEKPSKLIRLNGVPENATKEEILNAFWTPDGMPVKDLQL-KEYNTGYDYGYVCVEFSLL 508
Query: 500 EDASKALEATNGTTLEKNGQILRVAYAKSI 529
EDA +EA GT + + ++ + Y S+
Sbjct: 509 EDAIGCMEANQGTLMIHDKEVT-LEYVPSL 537
Score = 75 (31.5 bits), Expect = 6.0e-07, Sum P(5) = 6.0e-07
Identities = 18/82 (21%), Positives = 39/82 (47%)
Query: 969 KAIDENNVGNRMLRSMGWHEGLGLG--KDGSGMIEPVQAQAMDSRAGLGSQQKKVDPSLE 1026
+ I+ ++ G + ++ GW +G GLG G G E +++ G + K
Sbjct: 1044 EGINSSSTGGYVQQATGWRKGAGLGYGHPGLGSAEETESRMRGPNVGAPGRTSKR----- 1098
Query: 1027 VQAGDSYKTLIHKKALARFREM 1048
Q+ ++Y+ + + AR++E+
Sbjct: 1099 -QSNETYRDAVRRVMFARYKEL 1119
Score = 65 (27.9 bits), Expect = 1.5e-05, Sum P(6) = 1.5e-05
Identities = 21/84 (25%), Positives = 43/84 (51%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEW---G-PLRHVRVIKERNSGVSRGFAFIDFPSVGA 340
PS I + G+ + T+E++ A W G P++ ++ +KE N+G G+ ++F +
Sbjct: 454 PSKLIRLNGVPENATKEEILN--AFWTPDGMPVKDLQ-LKEYNTGYDYGYVCVEFSLLED 510
Query: 341 ARAMMDRIGDDGLVVDGRKLFFEY 364
A M+ L++ +++ EY
Sbjct: 511 AIGCMEA-NQGTLMIHDKEVTLEY 533
Score = 65 (27.9 bits), Expect = 3.0e-05, Sum P(5) = 3.0e-05
Identities = 23/95 (24%), Positives = 44/95 (46%)
Query: 286 SGTIVVKGLSQKTTEEDLYQILAEWGPLR--HVRVIKERNSGVSRGFAFIDFPSVGAARA 343
S TI++K + + T E + ++L + L ++R+IK R + + FID S A
Sbjct: 652 SKTIMLKRIYRSTPPEVIVEVLEPYVRLTTANIRIIKNRTGHMGHTYGFIDLDSHAEALR 711
Query: 344 MMDRIG--DDGLVVDGRKLFFEYSS-KPTGGSGGH 375
++ + D + G+ + ++ K SG H
Sbjct: 712 VVKILQNLDPPFSIAGKMVAVNLATGKRRNDSGDH 746
Score = 47 (21.6 bits), Expect = 6.0e-07, Sum P(5) = 6.0e-07
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 60 NYPPPPVGLWPQSRRR-NYEEDYSLDRESRRHEKP 93
+YPPPP+ Q R N+ SL + + H P
Sbjct: 29 DYPPPPLKSHAQERHSGNFPGRDSLPFDFQGHSGP 63
Score = 46 (21.3 bits), Expect = 0.00024, Sum P(4) = 0.00024
Identities = 23/64 (35%), Positives = 28/64 (43%)
Query: 853 ITAVTPFRTDASALGSYTPPVATGSGKRRFSEM--P---LPPATQKEQPQTTYRDRAAER 907
+ T +R A LG Y P GS + S M P P T K Q TYRD A R
Sbjct: 1055 VQQATGWRKGAG-LG-YGHP-GLGSAEETESRMRGPNVGAPGRTSKRQSNETYRD--AVR 1109
Query: 908 RSLY 911
R ++
Sbjct: 1110 RVMF 1113
Score = 41 (19.5 bits), Expect = 1.5e-05, Sum P(6) = 1.5e-05
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 397 WMCTICGCVNFARRTSCFQCNEARTD 422
W C C R+SC C R +
Sbjct: 540 WYCKWCKASTGGHRSSCSFCKCPREE 565
Score = 38 (18.4 bits), Expect = 6.0e-07, Sum P(5) = 6.0e-07
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 886 PLPPATQKEQ 895
PLPP +KE+
Sbjct: 878 PLPPTVKKEE 887
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 102 (41.0 bits), Expect = 6.7e-07, Sum P(2) = 6.7e-07
Identities = 21/76 (27%), Positives = 43/76 (56%)
Query: 286 SGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMM 345
SG I +K L + LY + +G + ++ + N G S+GF F+ F GAA+ +
Sbjct: 125 SGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDEN-GKSKGFGFVHFEEEGAAKEAI 183
Query: 346 DRIGDDGLVVDGRKLF 361
D + +G++++G++++
Sbjct: 184 DAL--NGMLLNGQEIY 197
Score = 98 (39.6 bits), Expect = 6.7e-07, Sum P(2) = 6.7e-07
Identities = 26/78 (33%), Positives = 44/78 (56%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
L V+ LD+ D+E L EF+ + I +++R + S+GF F+ F + E+A+KA+
Sbjct: 324 LFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTE-NGKSKGFGFVCFSTPEEATKAITEK 382
Query: 510 NGTTLEKNGQILRVAYAK 527
N + G+ L VA A+
Sbjct: 383 NQQIVA--GKPLYVAIAQ 398
Score = 96 (38.9 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 26/78 (33%), Positives = 42/78 (53%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
L V+ ++ +E + F+K PI L +D + +GF F+++ EDA KA+EA
Sbjct: 221 LYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKL-KGFGFVNYEKHEDAVKAVEAL 279
Query: 510 NGTTLEKNGQILRVAYAK 527
N + L NG+ L V A+
Sbjct: 280 NDSEL--NGEKLYVGRAQ 295
Score = 87 (35.7 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 20/79 (25%), Positives = 43/79 (54%)
Query: 289 IVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRI 348
+ VK ++ +TT+E ++ A++GP+ + K+ + G +GF F+++ A ++ +
Sbjct: 221 LYVKNINSETTDEQFQELFAKFGPIVSASLEKDAD-GKLKGFGFVNYEKHEDAVKAVEAL 279
Query: 349 GDDGLVVDGRKLFFEYSSK 367
D L +G KL+ + K
Sbjct: 280 NDSEL--NGEKLYVGRAQK 296
Score = 74 (31.1 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 16/63 (25%), Positives = 33/63 (52%)
Query: 286 SGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMM 345
S ++ V L +E LY I + G + +RV ++ + S G+A+++F A R +
Sbjct: 37 SASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAI 96
Query: 346 DRI 348
+++
Sbjct: 97 EQL 99
>UNIPROTKB|F2Z2U1 [details] [associations]
symbol:RBMY1A1 "RNA-binding motif protein, Y chromosome,
family 1 member E" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC010141 HGNC:HGNC:9912
HGNC:HGNC:23914 EMBL:AC007322 HGNC:HGNC:23915 HGNC:HGNC:23916
IPI:IPI00916472 SMR:F2Z2U1 Ensembl:ENST00000358944
Ensembl:ENST00000361046 Ensembl:ENST00000382639
Ensembl:ENST00000382653 Uniprot:F2Z2U1
Length = 81
Score = 126 (49.4 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 26/62 (41%), Positives = 39/62 (62%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
L + GL+ +E+ML+ F KH PI ++ L++D+ T SRGFAF+ F + DA A +
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDM 68
Query: 510 NG 511
NG
Sbjct: 69 NG 70
Score = 101 (40.6 bits), Expect = 0.00032, P = 0.00032
Identities = 27/71 (38%), Positives = 42/71 (59%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAAR-AMM 345
G + + GL+++T E+ L + + GP+ V +IK+R S SRGFAFI F + A+ A
Sbjct: 8 GKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSK-SRGFAFITFENPADAKNAAK 66
Query: 346 DRIGDDGLVVD 356
D G ++VD
Sbjct: 67 DMNGK--MMVD 75
>UNIPROTKB|F1PB61 [details] [associations]
symbol:TAF15 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001876
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00641 PROSITE:PS01358
PROSITE:PS50102 PROSITE:PS50199 SMART:SM00360 SMART:SM00547
GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005622 GeneTree:ENSGT00530000063105 CTD:8148 KO:K14651
OMA:YGNQGSQ EMBL:AAEX03006620 EMBL:AAEX03006619 RefSeq:XP_548255.2
ProteinModelPortal:F1PB61 Ensembl:ENSCAFT00000028877 GeneID:491135
KEGG:cfa:491135 Uniprot:F1PB61
Length = 571
Score = 138 (53.6 bits), Expect = 7.5e-07, Sum P(4) = 7.5e-07
Identities = 44/160 (27%), Positives = 77/160 (48%)
Query: 286 SGTIVVKGLSQKTTEEDLYQILAEWGPLRH--------VRVIKERNSGVSRGFAFIDFPS 337
+ TI V+GL + + + + + + G ++ + + ++++G +G A + F
Sbjct: 232 NNTIFVQGLGEGVSTDQVGEFFKQIGIIKTNKKTGKPMINLYTDKDTGKPKGEATVSFDD 291
Query: 338 VGAARAMMDRIGDDGLVVDGRKLFFEYSSK-PT----GGSGG-HYGQESAMGARHSNHKS 391
+A+A +D DG G + ++++ P GGSGG G+ G +
Sbjct: 292 PPSAKAAIDWF--DGKEFHGNIIKVSFATRRPEFMRGGGSGGGRRGRGGYRGRGGFQGRG 349
Query: 392 TIPC--DWMCT--ICGCVNFARRTSCFQCNEARTDDAPPA 427
P DW+C CG +NFARR SC QCNE R +D+ P+
Sbjct: 350 GDPKSGDWVCPNPSCGNMNFARRNSCNQCNEPRPEDSRPS 389
Score = 52 (23.4 bits), Expect = 7.5e-07, Sum P(4) = 7.5e-07
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 599 GFVWDEASGYYYDAASGFYYDGNTGLYYDGNSGIWYSYDQ 638
G+ D + G Y SG Y G+ G Y G+ G Y D+
Sbjct: 435 GYGGDRSGGGYGGDRSGGGYGGDRGGGYGGDRGGGYGGDR 474
Score = 51 (23.0 bits), Expect = 9.4e-07, Sum P(4) = 9.4e-07
Identities = 14/40 (35%), Positives = 18/40 (45%)
Query: 599 GFVWDEASGYYYDAASGFYYDGNTGLYYDGNSGIWYSYDQ 638
G+ D GY D G Y G+ G Y G+ G Y D+
Sbjct: 469 GYGGDRGGGYGGDRGGG--YGGDRGGGYGGDRGGGYGGDR 506
Score = 51 (23.0 bits), Expect = 9.4e-07, Sum P(4) = 9.4e-07
Identities = 14/40 (35%), Positives = 18/40 (45%)
Query: 599 GFVWDEASGYYYDAASGFYYDGNTGLYYDGNSGIWYSYDQ 638
G+ D GY D G Y G+ G Y G+ G Y D+
Sbjct: 461 GYGGDRGGGYGGDRGGG--YGGDRGGGYGGDRGGGYGGDR 498
Score = 51 (23.0 bits), Expect = 9.4e-07, Sum P(4) = 9.4e-07
Identities = 14/40 (35%), Positives = 18/40 (45%)
Query: 599 GFVWDEASGYYYDAASGFYYDGNTGLYYDGNSGIWYSYDQ 638
G+ D GY D G Y G+ G Y G+ G Y D+
Sbjct: 453 GYGGDRGGGYGGDRGGG--YGGDRGGGYGGDRGGGYGGDR 490
Score = 48 (22.0 bits), Expect = 1.8e-06, Sum P(4) = 1.8e-06
Identities = 14/40 (35%), Positives = 17/40 (42%)
Query: 599 GFVWDEASGYYYDAASGFYYDGNTGLYYDGNSGIWYSYDQ 638
G+ D GY D G Y G+ G Y SG Y D+
Sbjct: 485 GYGGDRGGGYGGDRGGG--YGGDRGGYGGDRSGGGYGGDR 522
Score = 47 (21.6 bits), Expect = 7.5e-07, Sum P(4) = 7.5e-07
Identities = 19/61 (31%), Positives = 27/61 (44%)
Query: 2 DPGRYGLQQGWDNNSALEGYGAIHEPNFRVGGSYDERRFLDERYSRDNIYPRNAF-QREN 60
D YG Q +D S GY H+ GSYDE+ ++ N ++ QR+N
Sbjct: 105 DQSDYGQQDSYDQQS---GYDQ-HQ------GSYDEQSNYGPQHDSYNQNQQSYHSQRDN 154
Query: 61 Y 61
Y
Sbjct: 155 Y 155
Score = 46 (21.3 bits), Expect = 2.9e-06, Sum P(4) = 2.9e-06
Identities = 16/47 (34%), Positives = 21/47 (44%)
Query: 599 GFVWDEASGYYYDAASGFYYDGNTGLYYDGNSGIWYSY--DQQTQQY 643
G+ D GY D + G Y G+ G Y G G Y DQ+ + Y
Sbjct: 527 GYGGDRGGGYGGDRSGGGY-GGDRG-GYGGKMGGRNDYRNDQRNRPY 571
Score = 45 (20.9 bits), Expect = 3.6e-06, Sum P(4) = 3.6e-06
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 597 QSGFVWDEASGYYY-DAASGFYYDGNTGLYYDGN-SGIWYSYDQ 638
+ G+ D + G Y D G Y G+ G Y G+ SG Y D+
Sbjct: 506 RGGYGGDRSGGGYGGDRGGGGGYGGDRGGGYGGDRSGGGYGGDR 549
Score = 43 (20.2 bits), Expect = 5.6e-06, Sum P(4) = 5.6e-06
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 599 GFVWDEASGYYY-DAASGFYYDGNTGLYYDGNSGIWYSYDQ 638
G+ D + G Y D G Y G+ G Y G+ G Y D+
Sbjct: 444 GYGGDRSGGGYGGDRGGG--YGGDRGGGYGGDRGGGYGGDR 482
Score = 42 (19.8 bits), Expect = 7.5e-07, Sum P(4) = 7.5e-07
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 119 RDGYRNIENYRDHGFERP 136
R G++N +RD+G RP
Sbjct: 205 RGGFKNFGGHRDYG-PRP 221
>UNIPROTKB|E1BT66 [details] [associations]
symbol:TAF15 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR001876
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00641 PROSITE:PS01358
PROSITE:PS50102 PROSITE:PS50199 SMART:SM00360 SMART:SM00547
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00530000063105
OMA:YGNQGSQ EMBL:AADN02025953 EMBL:AADN02025954 IPI:IPI00575015
ProteinModelPortal:E1BT66 Ensembl:ENSGALT00000003204 Uniprot:E1BT66
Length = 443
Score = 139 (54.0 bits), Expect = 8.4e-07, Sum P(2) = 8.4e-07
Identities = 43/160 (26%), Positives = 75/160 (46%)
Query: 286 SGTIVVKGLSQKTTEEDLYQILAEWGPLRH--------VRVIKERNSGVSRGFAFIDFPS 337
+ TI V+GL + + + + + G ++ + + ++++G +G A + F
Sbjct: 237 NNTIFVQGLGEDVSTDQVADYFKQIGIIKTNKKTGKPMINLYTDKDTGKPKGEATVSFDD 296
Query: 338 VGAARAMMDRIGDDGLVVDGRKLFFEYSSK-PT----GGSGGHYGQESAMGARHS-NHKS 391
+A+A +D DG +G + ++++ P GG GG G G +S
Sbjct: 297 PPSAKAAIDWF--DGKEFNGNVIKVSFATRRPEFMRGGGGGGRRGSRGGYGRGGGFQGRS 354
Query: 392 TIPC--DWMCT--ICGCVNFARRTSCFQCNEARTDDAPPA 427
P DW+C CG +NFARR SC QC E R +D+ P+
Sbjct: 355 GEPKNGDWVCPNPSCGNMNFARRNSCNQCGEPRPEDSRPS 394
Score = 55 (24.4 bits), Expect = 8.4e-07, Sum P(2) = 8.4e-07
Identities = 32/132 (24%), Positives = 56/132 (42%)
Query: 4 GRYGLQQGWDNNSALEGYGAIHEPNF---RVGGSYDERRFLDERYSRDNIYPRNAFQREN 60
G G Q DN+S + YG H N+ + G D + DE S DN ++++ +++
Sbjct: 33 GYSGYGQSGDNSSYGQSYGNYHG-NYGQNQTGYGQDSHGYDDES-SYDN-QNQSSYNQQS 89
Query: 61 YPPPPVGLWP-QSRRRNYEEDYSLDRESRRHEKPYIDSYHEMDAYCGHEIDSFPEFDKFR 119
Y + R +Y Y D++S + SY + Y GH+ +D+ +
Sbjct: 90 YSNQGQQKGSSRGGRGSYSSSY--DQQSGYGHQ---GSYDQQSGY-GHQ----SSYDQ-K 138
Query: 120 DGYRNIENYRDH 131
GY ++ H
Sbjct: 139 SGYNQHQSSYGH 150
Score = 48 (22.0 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 38/139 (27%), Positives = 57/139 (41%)
Query: 4 GRYGLQQGWDNNSALEGYGAIHEPNFRVGGSYDERRFLDERYSRDNIYPRNAFQRENYPP 63
GR +D S GYG H+ GSYD++ + S D N Q +Y
Sbjct: 103 GRGSYSSSYDQQS---GYG--HQ------GSYDQQSGYGHQSSYDQKSGYNQHQ-SSYGH 150
Query: 64 PPVGLWPQSRRRNYEEDYSLDR--ESRRHE--KPYIDSY------HEMDAYCGHEIDSFP 113
QS++ +Y + DR +SR E + Y S ++MD GH + +
Sbjct: 151 SQQSY--QSQKGSYSHNSQDDRREKSRYGEDNRGYGGSQGGGRGGYDMDGR-GH-MSGYS 206
Query: 114 EFDKFRDGYRNIENYRDHG 132
D R G++N RD+G
Sbjct: 207 GGD--RGGFKNYGGQRDYG 223
>ZFIN|ZDB-GENE-040426-1546 [details] [associations]
symbol:zgc:66127 "zgc:66127" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1546 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104376 EMBL:CABZ01055593
EMBL:CABZ01000532 EMBL:CABZ01000533 EMBL:CABZ01000534
EMBL:CABZ01000536 EMBL:CABZ01000539 EMBL:CABZ01000540
EMBL:CABZ01085064 EMBL:CABZ01085065 EMBL:CABZ01085066
EMBL:CABZ01085067 EMBL:CABZ01085068 EMBL:CABZ01088246
EMBL:CABZ01088247 EMBL:CABZ01088248 EMBL:CABZ01088249
EMBL:CABZ01088250 EMBL:CABZ01088251 EMBL:CABZ01092715
EMBL:CABZ01092716 EMBL:CABZ01092717 EMBL:CABZ01092718
IPI:IPI00971841 Ensembl:ENSDART00000082448 Bgee:E7FAB3
Uniprot:E7FAB3
Length = 411
Score = 118 (46.6 bits), Expect = 8.5e-07, Sum P(3) = 8.5e-07
Identities = 31/83 (37%), Positives = 45/83 (54%)
Query: 289 IVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRI 348
+ + GLS +TT+E L +WG L V+++ N+ SRGF F+ + SVG A MD
Sbjct: 40 LFIGGLSFETTDESLRAHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYSSVGEVDAAMDAR 99
Query: 349 GD--DGLVVDGRKLFF-EYSSKP 368
DG V+ ++ E SSKP
Sbjct: 100 PHKVDGRAVEPKRAVSREDSSKP 122
Score = 79 (32.9 bits), Expect = 8.5e-07, Sum P(3) = 8.5e-07
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHF--HSVED 501
+ V G+ E DEE LR F + I ++ ++ +K + RGFAF+ F H D
Sbjct: 131 MFVGGIKEDTDEEHLREYFGQFGKIDEVNIMTEKNSDKRRGFAFITFDDHDAVD 184
Score = 38 (18.4 bits), Expect = 8.5e-07, Sum P(3) = 8.5e-07
Identities = 13/41 (31%), Positives = 13/41 (31%)
Query: 618 YDGNTGLYYDGNSGIWYSYDQQTQQYIPCTDQNDNKTSGNG 658
Y GN G G G Y Q Y N N G G
Sbjct: 283 YGGNRGYGSGGGGGGGGGYGNQGGGYGGGGYDNYNNNGGGG 323
>UNIPROTKB|F6XHA7 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
Uniprot:F6XHA7
Length = 185
Score = 132 (51.5 bits), Expect = 9.4e-07, P = 9.4e-07
Identities = 32/97 (32%), Positives = 53/97 (54%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
G + V GLS T E+ L Q+ +++G + V V+K+R + SRGF F+ F ++ A+ M
Sbjct: 6 GKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM- 64
Query: 347 RIGDDGLVVDGRKLFFEYSSKPTGGSGGHYGQESAMG 383
+ +G VDGR++ + + K + Y SA G
Sbjct: 65 -MAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGG 100
Score = 126 (49.4 bits), Expect = 4.9e-06, Sum P(2) = 4.9e-06
Identities = 32/85 (37%), Positives = 50/85 (58%)
Query: 442 SDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVED 501
SD G L V GL +E+ L FSK+ I ++ +V+D+ T SRGF F+ F +++D
Sbjct: 3 SDEGK---LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 502 ASKALEATNGTTLEKNGQILRVAYA 526
A A+ A NG +++ G+ +RV A
Sbjct: 60 AKDAMMAMNGKSVD--GRQIRVDQA 82
Score = 37 (18.1 bits), Expect = 4.9e-06, Sum P(2) = 4.9e-06
Identities = 10/29 (34%), Positives = 11/29 (37%)
Query: 925 GSGDSNRDFALKKGSVDSMPFPPGVGGRG 953
G NR + GS F G GRG
Sbjct: 83 GKSSDNRSRGYRGGSAGGRGFFRGGRGRG 111
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 108 (43.1 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 30/91 (32%), Positives = 51/91 (56%)
Query: 437 LGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHF 496
LG K + T+V + + + D+E L+ FSK+ ++++ D T S+GF F+ F
Sbjct: 183 LGAKAKEF--TNVYI-KNFGDDMDDERLKELFSKYGKTLSVKVMTDP-TGKSKGFGFVSF 238
Query: 497 HSVEDASKALEATNGTTLEKNGQILRVAYAK 527
EDA+KA+E NG + NG+++ V A+
Sbjct: 239 EKHEDANKAVEEMNGKDI--NGKMVFVGRAQ 267
Score = 98 (39.6 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 23/62 (37%), Positives = 36/62 (58%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
L ++ LD+ D+E LR EFS I +++ + S+GF F+ F S E+A+KA+
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEM 353
Query: 510 NG 511
NG
Sbjct: 354 NG 355
Score = 91 (37.1 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 19/75 (25%), Positives = 43/75 (57%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
G + +K L + + LY + +G + +V+ + N S+G+AF+ F + AA ++
Sbjct: 99 GNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIE 156
Query: 347 RIGDDGLVVDGRKLF 361
++ +G++++ RK+F
Sbjct: 157 KM--NGMLLNDRKVF 169
Score = 90 (36.7 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 21/63 (33%), Positives = 36/63 (57%)
Query: 452 VRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNG 511
++ LD+ D + L FS I ++V D+ + S+G+AF+HF + + A +A+E NG
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKMNG 160
Query: 512 TTL 514
L
Sbjct: 161 MLL 163
Score = 84 (34.6 bits), Expect = 5.2e-06, Sum P(2) = 5.2e-06
Identities = 21/83 (25%), Positives = 41/83 (49%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
P ++ V L TE LY+ + GP+ +RV ++ + S G+A+++F A
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERA 68
Query: 345 MDRIGDDGLVVDGRKLFFEYSSK 367
+D + D V+ G+ + +S +
Sbjct: 69 LDTMNFD--VIKGKPIRIMWSQR 89
>UNIPROTKB|J3KQ82 [details] [associations]
symbol:RBMY1J "RNA-binding motif protein, Y chromosome,
family 1 member F/J" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012604 Pfam:PF08081
EMBL:AC023342 EMBL:AC007320 HGNC:HGNC:23974 HGNC:HGNC:23917
ProteinModelPortal:J3KQ82 Ensembl:ENST00000445779
Ensembl:ENST00000454978 Uniprot:J3KQ82
Length = 459
Score = 147 (56.8 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 32/78 (41%), Positives = 50/78 (64%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
L + GL+ +E+ML+ F KH PI ++ L++D+ T SRGFAF+ F + DA A +
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDM 68
Query: 510 NGTTLEKNGQILRVAYAK 527
NGT+L +G+ ++V AK
Sbjct: 69 NGTSL--HGKAIKVEQAK 84
>UNIPROTKB|F1S187 [details] [associations]
symbol:LOC100518332 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001876 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00641
PROSITE:PS01358 PROSITE:PS50102 PROSITE:PS50199 SMART:SM00360
SMART:SM00547 GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005622 GeneTree:ENSGT00530000063105
EMBL:CU896616 Ensembl:ENSSSCT00000019273 OMA:TESSSGX Uniprot:F1S187
Length = 406
Score = 138 (53.6 bits), Expect = 1.0e-06, Sum P(3) = 1.0e-06
Identities = 44/160 (27%), Positives = 77/160 (48%)
Query: 286 SGTIVVKGLSQKTTEEDLYQILAEWGPLRH--------VRVIKERNSGVSRGFAFIDFPS 337
+ TI V+GL + + + + + + G ++ + + ++++G +G A + F
Sbjct: 36 NNTIFVQGLGEGVSTDQVGEFFKQIGIIKTNKKTGKPMINLYTDKDTGKPKGEATVSFDD 95
Query: 338 VGAARAMMDRIGDDGLVVDGRKLFFEYSSK-PT----GGSGG-HYGQESAMGARHSNHKS 391
+A+A +D DG G + ++++ P GGSGG G+ G +
Sbjct: 96 PPSAKAAIDWF--DGKEFHGNIIKVSFATRRPEFMRGGGSGGGRRGRGGYRGRGGFQGRG 153
Query: 392 TIPC--DWMCT--ICGCVNFARRTSCFQCNEARTDDAPPA 427
P DW+C CG +NFARR SC QCNE R +D+ P+
Sbjct: 154 GDPKSGDWVCPNPSCGNMNFARRNSCNQCNEPRPEDSRPS 193
Score = 52 (23.4 bits), Expect = 1.0e-06, Sum P(3) = 1.0e-06
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 599 GFVWDEASGYYYDAASGFYYDGNTGLYYDGNSGIWYSYDQ 638
G+ D + GY D G Y G+ G Y G+ G Y D+
Sbjct: 281 GYGGDRSGGYGGDRGGG--YGGDRGGGYGGDRGGGYGGDR 318
Score = 52 (23.4 bits), Expect = 1.0e-06, Sum P(3) = 1.0e-06
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 599 GFVWDEASGYYYDAASGFYYDGNTGLYYDGNSGIWYSYDQ 638
G+ D GY D + G Y G+ G Y G+ G Y D+
Sbjct: 273 GYGGDRGGGYGGDRSGG--YGGDRGGGYGGDRGGGYGGDR 310
Score = 52 (23.4 bits), Expect = 1.0e-06, Sum P(3) = 1.0e-06
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 599 GFVWDEASGYYYDAASGFYYDGNTGLYYDGNSGIWYSYDQ 638
G+ D + G Y SG Y G+ G Y G+ G Y D+
Sbjct: 239 GYGGDRSGGGYGGDRSGGGYGGDRGGGYGGDRGGGYGGDR 278
Score = 51 (23.0 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 14/40 (35%), Positives = 18/40 (45%)
Query: 599 GFVWDEASGYYYDAASGFYYDGNTGLYYDGNSGIWYSYDQ 638
G+ D GY D G Y G+ G Y G+ G Y D+
Sbjct: 289 GYGGDRGGGYGGDRGGG--YGGDRGGGYGGDRGGGYGGDR 326
Score = 47 (21.6 bits), Expect = 3.2e-06, Sum P(3) = 3.2e-06
Identities = 17/54 (31%), Positives = 23/54 (42%)
Query: 598 SGFVWDEASGYYYDAASGFYYDGNTGLY------YDGNSGIWYSY--DQQTQQY 643
SG+ D + GY D + G Y +G Y Y G G Y DQ+ + Y
Sbjct: 353 SGYGGDRSGGYGGDRSGGGYGGDRSGGYGGDRGGYGGKMGGRNDYRNDQRNRPY 406
Score = 46 (21.3 bits), Expect = 4.0e-06, Sum P(3) = 4.0e-06
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 599 GFVWDEASGYYYDAASGFYYDGNTGLYYDGNSGIWYSYDQ 638
G+ D GY D G+ D + G Y G+ G Y D+
Sbjct: 265 GYGGDRGGGYGGDRGGGYGGDRSGG--YGGDRGGGYGGDR 302
Score = 45 (20.9 bits), Expect = 5.0e-06, Sum P(3) = 5.0e-06
Identities = 13/40 (32%), Positives = 17/40 (42%)
Query: 599 GFVWDEASGYYYDAASGFYYDGNTGLYYDGNSGIWYSYDQ 638
G+ D GY D G Y G+ G Y G+ Y D+
Sbjct: 257 GYGGDRGGGYGGDRGGG--YGGDRGGGYGGDRSGGYGGDR 294
Score = 44 (20.5 bits), Expect = 6.3e-06, Sum P(3) = 6.3e-06
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 597 QSGFVWDEASGYYY-DAASGFYYDGNTGLYYDGN-SGIWYSYDQ 638
+ G+ D + G Y D SG Y G+ Y G+ SG Y D+
Sbjct: 333 RGGYGGDRSGGGYGGDRGSGSGYGGDRSGGYGGDRSGGGYGGDR 376
Score = 43 (20.2 bits), Expect = 8.0e-06, Sum P(3) = 8.0e-06
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 599 GFVWDEASGYYY-DAASGFYYDGNTGLYYDGNSGIWYSYDQ 638
G+ D + G Y D G Y G+ G Y G+ G Y D+
Sbjct: 248 GYGGDRSGGGYGGDRGGG--YGGDRGGGYGGDRGGGYGGDR 286
Score = 42 (19.8 bits), Expect = 1.0e-06, Sum P(3) = 1.0e-06
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 119 RDGYRNIENYRDHGFERP 136
R G++N +RD+G RP
Sbjct: 9 RGGFKNFGGHRDYG-PRP 25
>TAIR|locus:2077427 [details] [associations]
symbol:AT3G08000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC013483 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q14103 UniGene:At.40270 UniGene:At.28103
EMBL:BT012118 EMBL:BT012373 IPI:IPI00520412 RefSeq:NP_187457.1
ProteinModelPortal:Q9SFB4 SMR:Q9SFB4 EnsemblPlants:AT3G08000.1
GeneID:819991 KEGG:ath:AT3G08000 TAIR:At3g08000 InParanoid:Q9SFB4
OMA:FCTSSSA PhylomeDB:Q9SFB4 ProtClustDB:CLSN2915579
Genevestigator:Q9SFB4 Uniprot:Q9SFB4
Length = 143
Score = 124 (48.7 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 29/91 (31%), Positives = 47/91 (51%)
Query: 282 AVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAA 341
+ +PS + + GLS E+ L + +G + VR+ ++ SG SRGF F+DF G A
Sbjct: 36 SASPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDA 95
Query: 342 RAMMDRIGDDGLVVDGRKLFFEYS-SKPTGG 371
+ D + GL+ GR L ++ + GG
Sbjct: 96 LSAKDAMDGKGLL--GRPLRISFALERVRGG 124
Score = 118 (46.6 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 34/108 (31%), Positives = 54/108 (50%)
Query: 420 RTDDAPPAEMNSS-NPIPLGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLR 478
R P ++SS + +P S P+ L + GL DE+ L+ FS + ++R
Sbjct: 12 RVSAIPQHSISSSFHFLPQFCTSSSASPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVR 71
Query: 479 LVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYA 526
+ DK + SRGF F+ F DA A +A +G L G+ LR+++A
Sbjct: 72 IAYDKGSGRSRGFGFVDFAEEGDALSAKDAMDGKGLL--GRPLRISFA 117
>UNIPROTKB|Q15415 [details] [associations]
symbol:RBMY1F "RNA-binding motif protein, Y chromosome,
family 1 member F/J" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0007283 "spermatogenesis" evidence=NAS]
[GO:0003723 "RNA binding" evidence=NAS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 HPA:HPA001534
MIM:400006 eggNOG:NOG140744 OrthoDB:EOG4TF0N7 EMBL:X76060
EMBL:AK313597 EMBL:AC023342 EMBL:AC007320 EMBL:BC030018
EMBL:BC152392 IPI:IPI00413949 IPI:IPI00879122 PIR:B49418
RefSeq:NP_001006117.2 RefSeq:NP_689798.1 UniGene:Hs.567746
HSSP:Q14011 ProteinModelPortal:Q15415 SMR:Q15415 STRING:Q15415
PhosphoSite:Q15415 PaxDb:Q15415 PRIDE:Q15415 DNASU:159163
DNASU:378951 Ensembl:ENST00000250831 Ensembl:ENST00000303766
Ensembl:ENST00000414629 GeneID:159163 GeneID:378951 KEGG:hsa:159163
KEGG:hsa:378951 UCSC:uc004fva.3 UCSC:uc010nxh.3 CTD:159163
CTD:378951 GeneCards:GC0YM024314 GeneCards:GC0YP024456
HGNC:HGNC:23974 HGNC:HGNC:23917 neXtProt:NX_Q15415
PharmGKB:PA134946298 InParanoid:Q15415 OMA:KDMNGTS PhylomeDB:Q15415
NextBio:87890 Bgee:Q15415 CleanEx:HS_RBMY1F Genevestigator:Q15415
Uniprot:Q15415
Length = 496
Score = 147 (56.8 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 32/78 (41%), Positives = 50/78 (64%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
L + GL+ +E+ML+ F KH PI ++ L++D+ T SRGFAF+ F + DA A +
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDM 68
Query: 510 NGTTLEKNGQILRVAYAK 527
NGT+L +G+ ++V AK
Sbjct: 69 NGTSL--HGKAIKVEQAK 84
Score = 122 (48.0 bits), Expect = 0.00060, P = 0.00060
Identities = 32/89 (35%), Positives = 51/89 (57%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAAR-AMM 345
G + + GL+++T E+ L + + GP+ V +IK+R S SRGFAFI F + A+ A
Sbjct: 8 GKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSK-SRGFAFITFENPADAKNAAK 66
Query: 346 DRIGDDGLVVDGRKLFFEYSSKPTGGSGG 374
D +G + G+ + E + KP+ SGG
Sbjct: 67 DM---NGTSLHGKAIKVEQAKKPSFQSGG 92
>UNIPROTKB|F1LM82 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310403 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00700000104376 IPI:IPI00923129
Ensembl:ENSRNOT00000015325 ArrayExpress:F1LM82 Uniprot:F1LM82
Length = 312
Score = 106 (42.4 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 31/83 (37%), Positives = 43/83 (51%)
Query: 289 IVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAA-RAMMDR 347
+ + GLS +TTEE L +WG L V+++ S SRGF F+ F S+ AM R
Sbjct: 22 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 81
Query: 348 IGD-DGLVVDGRKLFF-EYSSKP 368
DG VV+ ++ E S KP
Sbjct: 82 PHSIDGRVVEPKRAVAREESGKP 104
Score = 74 (31.1 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 19/67 (28%), Positives = 31/67 (46%)
Query: 438 GKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFH 497
GK G+ L V G+ E +E LR F ++ I + ++ D+ + RGF F+ F
Sbjct: 102 GKPGAHV-TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFD 160
Query: 498 SVEDASK 504
+ K
Sbjct: 161 DHDPVDK 167
Score = 49 (22.3 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 14/40 (35%), Positives = 18/40 (45%)
Query: 611 DAASGFYYDGNTGLYYDGNSGIWYSYDQQTQQYIPCTDQN 650
D +G Y G G Y GN + +Y+QQ Y P N
Sbjct: 241 DGYNG-YGGGPGGNYGSGNYNDFGNYNQQPSNYGPMKSGN 279
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 108 (43.1 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 27/78 (34%), Positives = 45/78 (57%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
L ++ LD+ D+E LR EFS I +++++++ S+GF + F S EDA+KA+
Sbjct: 295 LYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQ--SKGFGLICFSSPEDATKAMTEM 352
Query: 510 NGTTLEKNGQILRVAYAK 527
NG L + L +A A+
Sbjct: 353 NGRIL--GSKPLSIALAQ 368
Score = 100 (40.3 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 25/68 (36%), Positives = 40/68 (58%)
Query: 460 DEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQ 519
D+E L+ FSK+ ++++ D + S+GF F+ F S E A KA+E NG + NGQ
Sbjct: 202 DDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDSHEAAKKAVEEMNGRDI--NGQ 258
Query: 520 ILRVAYAK 527
++ V A+
Sbjct: 259 LIFVGRAQ 266
Score = 87 (35.7 bits), Expect = 0.00091, Sum P(2) = 0.00091
Identities = 20/64 (31%), Positives = 34/64 (53%)
Query: 452 VRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNG 511
++ LD+ D + L FS I +++ D S+G+AF+HF + A +A+E NG
Sbjct: 102 IKNLDKSIDNKTLYEHFSAFGKILSSKVMSDD--QGSKGYAFVHFQNQSAADRAIEEMNG 159
Query: 512 TTLE 515
L+
Sbjct: 160 KLLK 163
Score = 84 (34.6 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 20/79 (25%), Positives = 43/79 (54%)
Query: 289 IVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRI 348
+ +K +E L + +++G V+V+ + +SG S+GF F+ F S AA+ ++ +
Sbjct: 192 VYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSHEAAKKAVEEM 250
Query: 349 GDDGLVVDGRKLFFEYSSK 367
+G ++G+ +F + K
Sbjct: 251 --NGRDINGQLIFVGRAQK 267
Score = 79 (32.9 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 19/75 (25%), Positives = 42/75 (56%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
G + +K L + + LY+ + +G + +V+ + + G S+G+AF+ F + AA ++
Sbjct: 98 GNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSD-DQG-SKGYAFVHFQNQSAADRAIE 155
Query: 347 RIGDDGLVVDGRKLF 361
+ +G ++ G K+F
Sbjct: 156 EM--NGKLLKGCKVF 168
Score = 78 (32.5 bits), Expect = 4.8e-06, Sum P(2) = 4.8e-06
Identities = 17/80 (21%), Positives = 44/80 (55%)
Query: 288 TIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDR 347
++ V L TE+ L++ + GP+ +R+ +++ + S G+A+++F + A+ +D
Sbjct: 11 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 70
Query: 348 IGDDGLVVDGRKLFFEYSSK 367
+ D ++ G+ + +S +
Sbjct: 71 MNFD--IIKGKSIRLMWSQR 88
>UNIPROTKB|B4DNY1 [details] [associations]
symbol:RBM6 "cDNA FLJ60318, highly similar to RNA-binding
protein 6" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000467
InterPro:IPR012677 InterPro:IPR015880 Pfam:PF01585 PROSITE:PS50174
SMART:SM00355 SMART:SM00443 GO:GO:0005634 GO:GO:0000166
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC105935
EMBL:AC104450 UniGene:Hs.696735 HGNC:HGNC:9903 ChiTaRS:RBM6
EMBL:AK298108 IPI:IPI00926778 SMR:B4DNY1 STRING:B4DNY1
Ensembl:ENST00000539992 UCSC:uc011bdi.2 HOVERGEN:HBG067411
Uniprot:B4DNY1
Length = 465
Score = 96 (38.9 bits), Expect = 1.2e-06, Sum P(4) = 1.2e-06
Identities = 35/112 (31%), Positives = 55/112 (49%)
Query: 567 KEYNPDDKQPTRGQEQRSDGDMVQKDGLALQSG-FVWDEASGYYYDAASGFYYDGNTG-- 623
K+Y D + R + SD + G S +++D A+GYYYD +G YYD NT
Sbjct: 101 KKYFRDRRGGGRNSDWSSD---TNRQGQQSSSDCYIYDSATGYYYDPLAGTYYDPNTQQE 157
Query: 624 LYYDGNSGIWYSYDQQTQQYIPCTDQNDNKTSGNGSEPSKQVDGGSKNRKVV 675
+Y + G+ +++ ++ P T Q K+S E SK+ DG K + V
Sbjct: 158 VYVPQDPGL--PEEEEIKEKKP-TSQG--KSSSK-KEMSKR-DGKEKKDRGV 202
Score = 79 (32.9 bits), Expect = 1.2e-06, Sum P(4) = 1.2e-06
Identities = 19/82 (23%), Positives = 42/82 (51%)
Query: 968 DKA-IDENNVGNRMLRSMGWHEGLGLGKDGSGMIEPVQAQAMDSRAGLGSQQKKVDPSLE 1026
DK ID ++ G + ++ GW +G GLG G+ +A+ +G+ + + +
Sbjct: 387 DKEDIDTSSKGGCVQQATGWRKGTGLGYGHPGLASSEEAEGRMRGPSVGASGR----TSK 442
Query: 1027 VQAGDSYKTLIHKKALARFREM 1048
Q+ ++Y+ + + AR++E+
Sbjct: 443 RQSNETYRDAVRRVMFARYKEL 464
Score = 63 (27.2 bits), Expect = 1.2e-06, Sum P(4) = 1.2e-06
Identities = 22/91 (24%), Positives = 42/91 (46%)
Query: 290 VVKGLSQKTTEEDLYQILAEWGPLR--HVRVIKERNSGVSRGFAFIDFPSVGAARAMMDR 347
++K + + T E + ++L + L +VR+IK R + + FID S A ++
Sbjct: 1 MLKRIYRSTPPEVIVEVLEPYVRLTTANVRIIKNRTGPMGHTYGFIDLDSHAEALRVVKI 60
Query: 348 IG--DDGLVVDGRKLFFEYSS-KPTGGSGGH 375
+ D +DG+ + ++ K SG H
Sbjct: 61 LQNLDPPFSIDGKMVAVNLATGKRRNDSGDH 91
Score = 38 (18.4 bits), Expect = 1.2e-06, Sum P(4) = 1.2e-06
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 886 PLPPATQKEQ 895
PLPP +KE+
Sbjct: 223 PLPPTVKKEE 232
>UNIPROTKB|H3BPI5 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL359757 HGNC:HGNC:8556 ProteinModelPortal:H3BPI5 SMR:H3BPI5
Ensembl:ENST00000562709 Bgee:H3BPI5 Uniprot:H3BPI5
Length = 255
Score = 94 (38.1 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 22/82 (26%), Positives = 46/82 (56%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
G I VK L + + LY ++ +G + V+ + N S+G+ F+ F + AA +
Sbjct: 99 GNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG--SKGYGFVHFETHEAAERAIK 156
Query: 347 RIGDDGLVVDGRKLFF-EYSSK 367
++ +G++++GRK+F ++ S+
Sbjct: 157 KM--NGMLLNGRKVFVGQFKSR 176
Score = 93 (37.8 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 20/60 (33%), Positives = 34/60 (56%)
Query: 452 VRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNG 511
++ E D+E L+ F K P ++++ D+ + S+GF F+ F EDA KA++ NG
Sbjct: 195 IKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNG 253
Score = 79 (32.9 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 19/83 (22%), Positives = 41/83 (49%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
P+ ++ V L TE LY+ + GP+ +R+ ++ + S +A+++F A
Sbjct: 9 PTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHA 68
Query: 345 MDRIGDDGLVVDGRKLFFEYSSK 367
+D + D V+ G+ + +S +
Sbjct: 69 LDTMNFD--VIKGKPVRIMWSQR 89
>MGI|MGI:109157 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=ISO;IDA] [GO:0030154 "cell
differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109157 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OMA:ARRYTGP
ChiTaRS:ELAVL3 EMBL:U29148 EMBL:U29149 EMBL:BC052097
IPI:IPI00122451 IPI:IPI00222990 RefSeq:NP_034617.1
UniGene:Mm.390167 PDB:1D8Z PDB:1D9A PDB:1FNX PDBsum:1D8Z
PDBsum:1D9A PDBsum:1FNX ProteinModelPortal:Q60900 SMR:Q60900
STRING:Q60900 PhosphoSite:Q60900 PaxDb:Q60900 PRIDE:Q60900
Ensembl:ENSMUST00000003501 GeneID:15571 KEGG:mmu:15571
UCSC:uc009onl.2 UCSC:uc009onn.1 InParanoid:Q60900 OrthoDB:EOG43R3N0
EvolutionaryTrace:Q60900 NextBio:288556 Bgee:Q60900
Genevestigator:Q60900 GermOnline:ENSMUSG00000003410 Uniprot:Q60900
Length = 367
Score = 144 (55.7 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 57/245 (23%), Positives = 110/245 (44%)
Query: 289 IVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPS-VGAARAMMDR 347
+ V GL + +++++ Q+ +++G + R++ ++ +GVSRG FI F + A A+
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 348 IGDDGLVVDGRKLFFEYSSKPTGGSGG----HYGQESAMGARHSNHKSTIPCDWMCTICG 403
G L + ++++ P+ +G H Q SA H T +
Sbjct: 187 NGQKPLGA-AEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQT----QRFRLDN 241
Query: 404 CVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKGSDTGPTHVLVVRGLDEYADEEM 463
+N A AR +P A S +G G G + V L ADE +
Sbjct: 242 LLNMAYGVKSPLSLIARF--SPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESV 299
Query: 464 LRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRV 523
L F + +++++RD T+ +GF F+ + ++A+ A+ + NG L + ++L+V
Sbjct: 300 LWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGE--RVLQV 357
Query: 524 AYAKS 528
++ S
Sbjct: 358 SFKTS 362
Score = 120 (47.3 bits), Expect = 0.00061, P = 0.00061
Identities = 32/111 (28%), Positives = 56/111 (50%)
Query: 418 EARTDDAPPAEMNSSNPIPLGKKGS-DTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKD 476
E++ P + P+ LG G+ D T+ L+V L + ++ + F I+
Sbjct: 10 ESQVGGGPAGPALPNGPL-LGTNGATDDSKTN-LIVNYLPQNMTQDEFKSLFGSIGDIES 67
Query: 477 LRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYAK 527
+LVRDK T S G+ F+++ DA KA+ NG L+ + ++V+YA+
Sbjct: 68 CKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQT--KTIKVSYAR 116
>RGD|628892 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:628892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 HSSP:P19339 eggNOG:COG0724 EMBL:CH473993
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OrthoDB:EOG43R3N0
EMBL:AB097198 IPI:IPI00192527 RefSeq:NP_758827.1 UniGene:Rn.22586
SMR:Q76IJ9 STRING:Q76IJ9 Ensembl:ENSRNOT00000018416 GeneID:282824
KEGG:rno:282824 UCSC:RGD:628892 InParanoid:Q76IJ9 NextBio:624869
Genevestigator:Q76IJ9 Uniprot:Q76IJ9
Length = 367
Score = 144 (55.7 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 57/245 (23%), Positives = 110/245 (44%)
Query: 289 IVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPS-VGAARAMMDR 347
+ V GL + +++++ Q+ +++G + R++ ++ +GVSRG FI F + A A+
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 348 IGDDGLVVDGRKLFFEYSSKPTGGSGG----HYGQESAMGARHSNHKSTIPCDWMCTICG 403
G L + ++++ P+ +G H Q SA H T +
Sbjct: 187 NGQKPLGA-AEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQT----QRFRLDN 241
Query: 404 CVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKGSDTGPTHVLVVRGLDEYADEEM 463
+N A AR +P A S +G G G + V L ADE +
Sbjct: 242 LLNMAYGVKSPLSLIARF--SPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESV 299
Query: 464 LRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRV 523
L F + +++++RD T+ +GF F+ + ++A+ A+ + NG L + ++L+V
Sbjct: 300 LWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGE--RVLQV 357
Query: 524 AYAKS 528
++ S
Sbjct: 358 SFKTS 362
Score = 120 (47.3 bits), Expect = 0.00061, P = 0.00061
Identities = 32/111 (28%), Positives = 56/111 (50%)
Query: 418 EARTDDAPPAEMNSSNPIPLGKKGS-DTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKD 476
E++ P + P+ LG G+ D T+ L+V L + ++ + F I+
Sbjct: 10 ESQVGGGPAGPALPNGPL-LGTNGATDDSKTN-LIVNYLPQNMTQDEFKSLFGSIGDIES 67
Query: 477 LRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYAK 527
+LVRDK T S G+ F+++ DA KA+ NG L+ + ++V+YA+
Sbjct: 68 CKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQT--KTIKVSYAR 116
>RGD|1560367 [details] [associations]
symbol:Rbm6 "RNA binding motif protein 6" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000467 InterPro:IPR000504
InterPro:IPR007087 InterPro:IPR012677 InterPro:IPR015880
PROSITE:PS50102 PROSITE:PS50157 PROSITE:PS50174 SMART:SM00355
SMART:SM00360 SMART:SM00443 RGD:1560367 GO:GO:0005634 GO:GO:0000166
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH473954
GeneTree:ENSGT00510000046476 CTD:10180 OMA:YDLDFRG IPI:IPI00371062
RefSeq:NP_001101656.1 UniGene:Rn.94277 Ensembl:ENSRNOT00000024939
GeneID:315997 KEGG:rno:315997 UCSC:RGD:1560367 OrthoDB:EOG4BCDMX
NextBio:670225 Uniprot:D4ACW0
Length = 1119
Score = 92 (37.4 bits), Expect = 1.5e-06, Sum P(5) = 1.5e-06
Identities = 21/57 (36%), Positives = 30/57 (52%)
Query: 567 KEYNPDDKQPTRGQEQRSDGDMVQKDGLALQSG-FVWDEASGYYYDAASGFYYDGNT 622
K+Y D + R + SD + G S +++D A+GYYYD +G YYD NT
Sbjct: 756 KKYFRDRRGGNRNSDWSSD---TNRQGQQSSSDCYIYDSATGYYYDPLAGTYYDPNT 809
Score = 83 (34.3 bits), Expect = 1.5e-06, Sum P(5) = 1.5e-06
Identities = 23/75 (30%), Positives = 40/75 (53%)
Query: 442 SDTGPTHVLVVRGLDEYAD-EEMLR-YEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSV 499
S+ P ++ + G+ E A EE+L + S P+K+L+L ++ T G+ + F +
Sbjct: 450 SEEKPNRLIRLNGVPENATKEEILNAFRTSDGLPVKELQL-KEYNTGYDYGYVCVEFSLL 508
Query: 500 EDASKALEATNGTTL 514
EDA +EA GT +
Sbjct: 509 EDAIGCMEANQGTLM 523
Score = 81 (33.6 bits), Expect = 1.8e-05, Sum P(5) = 1.8e-05
Identities = 21/66 (31%), Positives = 29/66 (43%)
Query: 608 YYYDAASGFYYDGNTGLYYDGNSGIWYSYDQQTQQYIPCTDQNDNKTSGNGSEPSKQVDG 667
Y YD+A+G+YYD G YYD N+ Q + Y+P Q+ + K
Sbjct: 787 YIYDSATGYYYDPLAGTYYDPNT--------QQEVYVP---QDPESPEEEEIKEKKSTSQ 835
Query: 668 GSKNRK 673
G N K
Sbjct: 836 GKSNSK 841
Score = 74 (31.1 bits), Expect = 1.5e-06, Sum P(5) = 1.5e-06
Identities = 19/79 (24%), Positives = 37/79 (46%)
Query: 972 DENNVGNRMLRSMGWHEGLGLGKD--GSGMIEPVQAQAMDSRAGLGSQQKKVDPSLEVQA 1029
D ++ G ++ GW +G GLG G G E ++ + S G K+ Q+
Sbjct: 1047 DTSSKGGCTQQATGWRKGAGLGYSHPGLGSSEEIEGRMRGSGGAPGRTSKR-------QS 1099
Query: 1030 GDSYKTLIHKKALARFREM 1048
++Y+ + + AR++E+
Sbjct: 1100 NETYRDAVRRVMFARYKEL 1118
Score = 74 (31.1 bits), Expect = 1.1e-05, Sum P(5) = 1.1e-05
Identities = 25/95 (26%), Positives = 45/95 (47%)
Query: 286 SGTIVVKGLSQKTTEEDLYQILAEWGPLR--HVRVIKERNSGVSRGFAFIDFPSVGAARA 343
S TI++K + + T E + ++L + L +VR+IK R + + FID S A
Sbjct: 652 SKTIMLKRIYRSTPPEVIVEVLEPYVHLTTANVRIIKNRTGPMGHTYGFIDLDSHAEALR 711
Query: 344 MMDRIG--DDGLVVDGRKLFFEYSS-KPTGGSGGH 375
++ + D +DG+ + ++ K SG H
Sbjct: 712 VVKILQNLDPPFSIDGKMVAVNLATGKRRNDSGDH 746
Score = 67 (28.6 bits), Expect = 1.9e-05, Sum P(6) = 1.9e-05
Identities = 18/86 (20%), Positives = 43/86 (50%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQIL--AEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAAR 342
P+ I + G+ + T+E++ ++ P++ ++ +KE N+G G+ ++F + A
Sbjct: 454 PNRLIRLNGVPENATKEEILNAFRTSDGLPVKELQ-LKEYNTGYDYGYVCVEFSLLEDAI 512
Query: 343 AMMDRIGDDGLVVDGRKLFFEYSSKP 368
M+ L++ +++ EY P
Sbjct: 513 GCMEA-NQGTLMIHDKEVTLEYVPSP 537
Score = 46 (21.3 bits), Expect = 1.5e-06, Sum P(5) = 1.5e-06
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 60 NYPPPPVGLWPQSRRR-NYEEDYSLDRESRRHEKP 93
+YPPPP+ Q R N+ SL + + H P
Sbjct: 29 DYPPPPLKSHAQERHPGNFPGRDSLPFDFQGHSGP 63
Score = 44 (20.5 bits), Expect = 0.00072, Sum P(4) = 0.00072
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 888 PPATQKEQPQTTYRDRAAERRSLY 911
P T K Q TYRD A RR ++
Sbjct: 1091 PGRTSKRQSNETYRD--AVRRVMF 1112
Score = 42 (19.8 bits), Expect = 1.9e-05, Sum P(6) = 1.9e-05
Identities = 13/58 (22%), Positives = 21/58 (36%)
Query: 394 PCDWMCTICGCVNFARRTSCFQCN----EARTDDAP-PAEMNSSNPIPLGKKGSDTGP 446
P W C C ++ C C E + + P +S P+P K+ + P
Sbjct: 537 PDFWYCKRCKASTGGHQSCCSYCKGPKEEVKQELVSYPQPQKTSIPVPSEKQPNQPRP 594
Score = 38 (18.4 bits), Expect = 1.5e-06, Sum P(5) = 1.5e-06
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 886 PLPPATQKEQ 895
PLPP +KE+
Sbjct: 878 PLPPTVKKEE 887
>TAIR|locus:2133862 [details] [associations]
symbol:AT4G26650 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0042732 "D-xylose
metabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 EMBL:AF419605 EMBL:AY097345 IPI:IPI00533249
RefSeq:NP_567753.1 UniGene:At.20416 UniGene:At.67937
ProteinModelPortal:Q8W569 SMR:Q8W569 STRING:Q8W569 PRIDE:Q8W569
EnsemblPlants:AT4G26650.1 GeneID:828772 KEGG:ath:AT4G26650
TAIR:At4g26650 InParanoid:Q8W569 OMA:LVEAVIM PhylomeDB:Q8W569
ProtClustDB:CLSN2689626 Genevestigator:Q8W569 Uniprot:Q8W569
Length = 455
Score = 116 (45.9 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 28/75 (37%), Positives = 44/75 (58%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDF--PSVGAARAM 344
G + + G+S T EE L + ++G L ++++R +G +RGF FI F PSV A R +
Sbjct: 15 GKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSV-AERVI 73
Query: 345 MDRIGDDGLVVDGRK 359
MD+ DG V+ +K
Sbjct: 74 MDKHIIDGRTVEAKK 88
Score = 72 (30.4 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 24/80 (30%), Positives = 34/80 (42%)
Query: 447 THVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKAL 506
T + V GL E + F + I D+ ++ D T RGF F+ F S E L
Sbjct: 121 TKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVL 180
Query: 507 EATNGTTLEKNGQILRVAYA 526
T E NG+++ V A
Sbjct: 181 HKTFH---ELNGKMVEVKRA 197
Score = 46 (21.3 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 618 YDGNTGLYYDGNSGIWYSYDQQTQQYIPCTDQNDNKTSG 656
+DG+ G Y G+S YS D QQ +P Q+ N+ G
Sbjct: 380 FDGSIGELYRGSSV--YS-DSTWQQSMP-HHQSSNELDG 414
Score = 37 (18.1 bits), Expect = 1.4e-05, Sum P(3) = 1.4e-05
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 911 YGSSFSAGDDLPDVG-SGDSN 930
YG S+ AG L + +G++N
Sbjct: 358 YGRSYGAGSGLSGLSFAGNTN 378
>UNIPROTKB|Q14576 [details] [associations]
symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
Length = 367
Score = 143 (55.4 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 57/245 (23%), Positives = 110/245 (44%)
Query: 289 IVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPS-VGAARAMMDR 347
+ V GL + +++++ Q+ +++G + R++ ++ +GVSRG FI F + A A+
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 348 IGDDGLVVDGRKLFFEYSSKPTGGSGG----HYGQESAMGARHSNHKSTIPCDWMCTICG 403
G L + ++++ P+ +G H Q SA H T +
Sbjct: 187 NGQKPLGA-AEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQT----QRFRLDN 241
Query: 404 CVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKGSDTGPTHVLVVRGLDEYADEEM 463
+N A AR +P A S +G G G + V L ADE +
Sbjct: 242 LLNMAYGVKSPLSLIARF--SPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESV 299
Query: 464 LRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRV 523
L F + +++++RD T+ +GF F+ + ++A+ A+ + NG L + ++L+V
Sbjct: 300 LWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGE--RVLQV 357
Query: 524 AYAKS 528
++ S
Sbjct: 358 SFKTS 362
Score = 120 (47.3 bits), Expect = 0.00061, P = 0.00061
Identities = 32/111 (28%), Positives = 56/111 (50%)
Query: 418 EARTDDAPPAEMNSSNPIPLGKKGS-DTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKD 476
E++ P + P+ LG G+ D T+ L+V L + ++ + F I+
Sbjct: 10 ESQVGGGPAGPALPNGPL-LGTNGATDDSKTN-LIVNYLPQNMTQDEFKSLFGSIGDIES 67
Query: 477 LRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYAK 527
+LVRDK T S G+ F+++ DA KA+ NG L+ + ++V+YA+
Sbjct: 68 CKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQT--KTIKVSYAR 116
>UNIPROTKB|F1PVV1 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
Length = 367
Score = 143 (55.4 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 57/245 (23%), Positives = 110/245 (44%)
Query: 289 IVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPS-VGAARAMMDR 347
+ V GL + +++++ Q+ +++G + R++ ++ +GVSRG FI F + A A+
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 348 IGDDGLVVDGRKLFFEYSSKPTGGSGG----HYGQESAMGARHSNHKSTIPCDWMCTICG 403
G L + ++++ P+ +G H Q SA H T +
Sbjct: 187 NGQKPLGA-AEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQT----QRFRLDN 241
Query: 404 CVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKGSDTGPTHVLVVRGLDEYADEEM 463
+N A AR +P A S +G G G + V L ADE +
Sbjct: 242 LLNMAYGVKSPLSLIARF--SPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESV 299
Query: 464 LRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRV 523
L F + +++++RD T+ +GF F+ + ++A+ A+ + NG L + ++L+V
Sbjct: 300 LWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGE--RVLQV 357
Query: 524 AYAKS 528
++ S
Sbjct: 358 SFKTS 362
Score = 119 (46.9 bits), Expect = 0.00078, P = 0.00078
Identities = 32/111 (28%), Positives = 56/111 (50%)
Query: 418 EARTDDAPPAEMNSSNPIPLGKKGS-DTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKD 476
E++ P + P+ LG G+ D T+ L+V L + ++ + F I+
Sbjct: 10 ESQVAGGPAGPALPNGPL-LGTNGATDDSKTN-LIVNYLPQNMTQDEFKSLFGSIGDIES 67
Query: 477 LRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYAK 527
+LVRDK T S G+ F+++ DA KA+ NG L+ + ++V+YA+
Sbjct: 68 CKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQT--KTIKVSYAR 116
>ZFIN|ZDB-GENE-040426-1094 [details] [associations]
symbol:tra2b "transformer 2 beta homolog
(Drosophila)" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-1094
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:Q9V535
HOVERGEN:HBG107480 KO:K12897 CTD:6434 EMBL:BC049051 IPI:IPI00493400
RefSeq:NP_957491.1 UniGene:Dr.9221 ProteinModelPortal:Q7ZUG9
SMR:Q7ZUG9 STRING:Q7ZUG9 PRIDE:Q7ZUG9 GeneID:394172 KEGG:dre:394172
InParanoid:Q7ZUG9 NextBio:20815117 ArrayExpress:Q7ZUG9 Bgee:Q7ZUG9
Uniprot:Q7ZUG9
Length = 278
Score = 140 (54.3 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 33/81 (40%), Positives = 49/81 (60%)
Query: 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKA 505
P L V GL Y E LR FSK+ P+ D+ +V D+ + SRGFA ++F + ED+ +A
Sbjct: 121 PNCCLGVFGLSLYTTERDLREVFSKYGPLSDVCIVYDQQSRRSRGFALVYFENREDSKEA 180
Query: 506 LEATNGTTLEKNGQILRVAYA 526
E NG +E +G+ +RV Y+
Sbjct: 181 KERANG--MELDGRRIRVDYS 199
Score = 125 (49.1 bits), Expect = 9.7e-05, Sum P(2) = 9.7e-05
Identities = 28/81 (34%), Positives = 50/81 (61%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
P+ + V GLS TTE DL ++ +++GPL V ++ ++ S SRGFA + F + ++
Sbjct: 121 PNCCLGVFGLSLYTTERDLREVFSKYGPLSDVCIVYDQQSRRSRGFALVYFENREDSKEA 180
Query: 345 MDRIGDDGLVVDGRKLFFEYS 365
+R +G+ +DGR++ +YS
Sbjct: 181 KERA--NGMELDGRRIRVDYS 199
Score = 42 (19.8 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 71 QSRRRNYEEDYSLDRESRRH 90
+SR R+Y +Y R S H
Sbjct: 84 RSRSRSYSSEYHRRRSSHSH 103
>UNIPROTKB|E2R228 [details] [associations]
symbol:E2R228 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AAEX03026350
Ensembl:ENSCAFT00000025375 OMA:SDVEYRC Uniprot:E2R228
Length = 149
Score = 122 (48.0 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 29/78 (37%), Positives = 47/78 (60%)
Query: 449 VLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEA 508
+L + GL+ +E+ L FS PI ++ +V+D+ T SRGF F+ F + E AS A+
Sbjct: 7 MLFLGGLNFNTNEQALEDHFSSFGPISEVVVVKDRETQRSRGFCFITFTNPEHASDAMRP 66
Query: 509 TNGTTLEKNGQILRVAYA 526
NG +L+ G+ +RV +A
Sbjct: 67 MNGKSLD--GRQIRVDHA 82
Score = 111 (44.1 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 28/88 (31%), Positives = 48/88 (54%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
G + + GL+ T E+ L + +GP+ V V+K+R + SRGF FI F + A M
Sbjct: 6 GMLFLGGLNFNTNEQALEDHFSSFGPISEVVVVKDRETQRSRGFCFITFTNPEHASDAMR 65
Query: 347 RIGDDGLVVDGRKLFFEYSSKPTGGSGG 374
+ +G +DGR++ +++ K G+ G
Sbjct: 66 PM--NGKSLDGRQIRVDHAGKLARGTRG 91
>TAIR|locus:2168133 [details] [associations]
symbol:AT5G59860 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00539298
RefSeq:NP_200794.1 UniGene:At.66722 ProteinModelPortal:F4JXD2
SMR:F4JXD2 EnsemblPlants:AT5G59860.1 GeneID:836108
KEGG:ath:AT5G59860 Uniprot:F4JXD2
Length = 157
Score = 122 (48.0 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 30/79 (37%), Positives = 45/79 (56%)
Query: 454 GLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTT 513
GL Y ++ LR F+ A RL++D+ T +GF F+ F S +DA KAL+A NG
Sbjct: 77 GLSAYTTDQSLRQLFAPFA-----RLIKDQQTQRPKGFGFITFESEDDAQKALKALNGKI 131
Query: 514 LEKNGQILRVAYAKSILGP 532
+ NG+++ V AK + P
Sbjct: 132 V--NGRLIFVETAKEVEAP 148
>TAIR|locus:505006587 [details] [associations]
symbol:AT5G08535 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000467
Pfam:PF01585 PROSITE:PS50174 SMART:SM00443 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0003676 EMBL:AK118260
IPI:IPI00521879 RefSeq:NP_568199.1 UniGene:At.28760 PRIDE:Q8GXG0
EnsemblPlants:AT5G08535.1 GeneID:830753 KEGG:ath:AT5G08535
TAIR:At5g08535 eggNOG:NOG301240 HOGENOM:HOG000077546
InParanoid:Q8GXG0 OMA:FFREFWP PhylomeDB:Q8GXG0
ProtClustDB:CLSN2717629 Genevestigator:Q8GXG0 Uniprot:Q8GXG0
Length = 141
Score = 122 (48.0 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 26/79 (32%), Positives = 45/79 (56%)
Query: 970 AIDENNVGNRMLRSMGWHEGLGLGKDGSGMIEPVQAQAMDSRAGLGSQQKKVDPSLEVQA 1029
AI+ +N+G ++L+ GW EG GLG G++ P+QA+ ++ G+G++Q + QA
Sbjct: 38 AINSSNIGFQLLKKHGWKEGTGLGIAEQGILVPLQAEPKHNKRGVGAKQPAKRKVAQPQA 97
Query: 1030 GDSYKTLIHKKALARFREM 1048
D + KK + R+M
Sbjct: 98 KDEEVSKQSKKLSKKMRKM 116
>UNIPROTKB|F1N4Q4 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
KO:K13126 TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT EMBL:DAAA02070194 IPI:IPI00700504
RefSeq:NP_001179218.1 UniGene:Bt.60242 ProteinModelPortal:F1N4Q4
Ensembl:ENSBTAT00000026566 GeneID:511286 KEGG:bta:511286
NextBio:20869865 Uniprot:F1N4Q4
Length = 382
Score = 101 (40.6 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 24/80 (30%), Positives = 46/80 (57%)
Query: 289 IVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAA-RAMMDR 347
+ VK ++ L ++ +E+GP V+VI++ +SG S+GF F+ + + AA +A++D
Sbjct: 201 VFVKNFGDDMDDDKLKELFSEYGPTESVKVIRD-SSGKSKGFGFVRYETHEAAQKAVLDL 259
Query: 348 IGDDGLVVDGRKLFFEYSSK 367
G +DG+ L+ + K
Sbjct: 260 HGKS---IDGKVLYVGRAQK 276
Score = 96 (38.9 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 23/81 (28%), Positives = 49/81 (60%)
Query: 447 THVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKAL 506
T+V V + + D++ L+ FS++ P + ++++RD + S+GF F+ + + E A KA+
Sbjct: 199 TNVFV-KNFGDDMDDDKLKELFSEYGPTESVKVIRDS-SGKSKGFGFVRYETHEAAQKAV 256
Query: 507 EATNGTTLEKNGQILRVAYAK 527
+G +++ G++L V A+
Sbjct: 257 LDLHGKSID--GKVLYVGRAQ 275
Score = 90 (36.7 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 20/62 (32%), Positives = 35/62 (56%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
+ ++ LDE D+E L+ EFS I +++ + +GF + F S E+A+KA++
Sbjct: 304 IYIKNLDETIDDEKLKEEFSSFGSISRAKVMVE--VGQGKGFGVICFSSFEEATKAVDEM 361
Query: 510 NG 511
NG
Sbjct: 362 NG 363
Score = 75 (31.5 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 17/75 (22%), Positives = 41/75 (54%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
G I +K L + L+ + + +G + +V+ + N S+G+A++ F S+ AA +
Sbjct: 106 GNIFIKNLDKSIDNRALFYLFSAFGSILSCKVVCDDNG--SKGYAYVHFDSLAAANRAIW 163
Query: 347 RIGDDGLVVDGRKLF 361
+ +G+ ++ R+++
Sbjct: 164 HM--NGVRLNNRQVY 176
>UNIPROTKB|J3KTH5 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
Uniprot:J3KTH5
Length = 428
Score = 108 (43.1 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 27/78 (34%), Positives = 45/78 (57%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
L ++ LD+ D+E LR EFS I +++++++ S+GF + F S EDA+KA+
Sbjct: 353 LYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQ--SKGFGLICFSSPEDATKAMTEM 410
Query: 510 NGTTLEKNGQILRVAYAK 527
NG L + L +A A+
Sbjct: 411 NGRIL--GSKPLSIALAQ 426
Score = 100 (40.3 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 25/68 (36%), Positives = 40/68 (58%)
Query: 460 DEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQ 519
D+E L+ FSK+ ++++ D + S+GF F+ F S E A KA+E NG + NGQ
Sbjct: 260 DDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDSHEAAKKAVEEMNGRDI--NGQ 316
Query: 520 ILRVAYAK 527
++ V A+
Sbjct: 317 LIFVGRAQ 324
Score = 84 (34.6 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 20/79 (25%), Positives = 43/79 (54%)
Query: 289 IVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRI 348
+ +K +E L + +++G V+V+ + +SG S+GF F+ F S AA+ ++ +
Sbjct: 250 VYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSHEAAKKAVEEM 308
Query: 349 GDDGLVVDGRKLFFEYSSK 367
+G ++G+ +F + K
Sbjct: 309 --NGRDINGQLIFVGRAQK 325
Score = 79 (32.9 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
Identities = 19/75 (25%), Positives = 42/75 (56%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
G + +K L + + LY+ + +G + +V+ + + G S+G+AF+ F + AA ++
Sbjct: 156 GNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSD-DQG-SKGYAFVHFQNQSAADRAIE 213
Query: 347 RIGDDGLVVDGRKLF 361
+ +G ++ G K+F
Sbjct: 214 EM--NGKLLKGCKVF 226
Score = 78 (32.5 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 17/80 (21%), Positives = 44/80 (55%)
Query: 288 TIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDR 347
++ V L TE+ L++ + GP+ +R+ +++ + S G+A+++F + A+ +D
Sbjct: 69 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 128
Query: 348 IGDDGLVVDGRKLFFEYSSK 367
+ D ++ G+ + +S +
Sbjct: 129 MNFD--IIKGKSIRLMWSQR 146
>UNIPROTKB|G3XAC6 [details] [associations]
symbol:RBM39 "RNA-binding region (RNP1, RRM) containing 2,
isoform CRA_f" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39
ProteinModelPortal:G3XAC6 SMR:G3XAC6 Ensembl:ENST00000338163
ArrayExpress:G3XAC6 Bgee:G3XAC6 Uniprot:G3XAC6
Length = 423
Score = 106 (42.4 bits), Expect = 1.9e-06, Sum P(3) = 1.9e-06
Identities = 36/103 (34%), Positives = 51/103 (49%)
Query: 424 APPAEMNSSNPIPLG-KKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRD 482
A AE N + + +KGS GP L V L E+MLR F I+ ++L+ D
Sbjct: 227 ASQAEKNRAAAMANNLQKGS-AGPMR-LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMD 284
Query: 483 KFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525
T S+G+ F+ F E A KALE NG E G+ ++V +
Sbjct: 285 SETGRSKGYGFITFSDSECAKKALEQLNG--FELAGRPMKVGH 325
Score = 82 (33.9 bits), Expect = 1.9e-06, Sum P(3) = 1.9e-06
Identities = 17/53 (32%), Positives = 30/53 (56%)
Query: 288 TIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGA 340
T+ L+ + DL + + G +R VR+I +RNS S+G A+++F V +
Sbjct: 154 TVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSS 206
Score = 45 (20.9 bits), Expect = 1.9e-06, Sum P(3) = 1.9e-06
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 197 SRDRERDKRCLSRERE 212
SRDRER K+ SRER+
Sbjct: 58 SRDRER-KKSKSRERK 72
>UNIPROTKB|Q5F3Y2 [details] [associations]
symbol:GPATCH2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0010923 "negative regulation of phosphatase activity"
evidence=IEA] InterPro:IPR000467 Pfam:PF01585 PROSITE:PS50174
SMART:SM00443 GO:GO:0003676 GO:GO:0010923
GeneTree:ENSGT00410000025698 HOGENOM:HOG000294060
InterPro:IPR026291 PANTHER:PTHR14195 CTD:55105 eggNOG:NOG300034
HOVERGEN:HBG062801 OMA:VPWWEKE OrthoDB:EOG4WM4TR EMBL:AADN02012112
EMBL:AADN02012113 EMBL:AADN02012114 EMBL:AJ851518 IPI:IPI00580287
RefSeq:NP_001026217.1 UniGene:Gga.22671 Ensembl:ENSGALT00000015679
GeneID:421355 KEGG:gga:421355 InParanoid:Q5F3Y2 NextBio:20824132
Uniprot:Q5F3Y2
Length = 504
Score = 145 (56.1 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 44/128 (34%), Positives = 57/128 (44%)
Query: 889 PATQKEQPQTTYRDRAAERRSLYGSSFSAGDDLPDVGSGD-SNRDFALKKGSVDSMPFPP 947
P +KE Q RD ++R SS V G D ++ + P P
Sbjct: 391 PGARKEHSQLL-RDNRSDRGHKKNSSVKTASRQTSVHLGSLCMGDIKRRRKAA---PLP- 445
Query: 948 GVGGRGFTADSVQSYEVITADKAIDENNVGNRMLRSMGWHEGLGLGKDGSGMIEPVQAQA 1007
G GF ++ Q I ENN+GNRML+SMGW G GLG DG G+ EP++A
Sbjct: 446 --GPTGFVGENTQP---------IPENNIGNRMLQSMGWTPGTGLGPDGKGIAEPIRAIQ 494
Query: 1008 MDSRAGLG 1015
GLG
Sbjct: 495 RPKGLGLG 502
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 101 (40.6 bits), Expect = 2.0e-06, Sum P(3) = 2.0e-06
Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 452 VRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNG 511
++ E D+E L+ F K P ++++ D+ + S+GF F+ F EDA KA++ NG
Sbjct: 195 IKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 512 TTLEKNGQILRVAYAK 527
L NG+ + V A+
Sbjct: 254 KEL--NGKQIYVGRAQ 267
Score = 94 (38.1 bits), Expect = 2.0e-06, Sum P(3) = 2.0e-06
Identities = 22/82 (26%), Positives = 46/82 (56%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
G I VK L + + LY ++ +G + V+ + N S+G+ F+ F + AA +
Sbjct: 99 GNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG--SKGYGFVHFETHEAAERAIK 156
Query: 347 RIGDDGLVVDGRKLFF-EYSSK 367
++ +G++++GRK+F ++ S+
Sbjct: 157 KM--NGMLLNGRKVFVGQFKSR 176
Score = 92 (37.4 bits), Expect = 1.7e-05, Sum P(3) = 1.7e-05
Identities = 23/62 (37%), Positives = 35/62 (56%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
L V+ LD+ D+E LR FS I +++ + S+GF F+ F S E+A+KA+
Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEM 353
Query: 510 NG 511
NG
Sbjct: 354 NG 355
Score = 84 (34.6 bits), Expect = 0.00017, Sum P(3) = 0.00017
Identities = 19/79 (24%), Positives = 42/79 (53%)
Query: 289 IVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRI 348
+ +K + +E L + ++GP V+V+ + SG S+GF F+ F A+ +D +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 349 GDDGLVVDGRKLFFEYSSK 367
+G ++G++++ + K
Sbjct: 252 --NGKELNGKQIYVGRAQK 268
Score = 79 (32.9 bits), Expect = 6.1e-05, Sum P(3) = 6.1e-05
Identities = 19/83 (22%), Positives = 41/83 (49%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
P+ ++ V L TE LY+ + GP+ +R+ ++ + S +A+++F A
Sbjct: 9 PTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHA 68
Query: 345 MDRIGDDGLVVDGRKLFFEYSSK 367
+D + D V+ G+ + +S +
Sbjct: 69 LDTMNFD--VIKGKPVRIMWSQR 89
Score = 45 (20.9 bits), Expect = 2.0e-06, Sum P(3) = 2.0e-06
Identities = 18/56 (32%), Positives = 26/56 (46%)
Query: 849 NSDTITAVTPFRTDASALGSYTPPVATGSGKRRFSEMPLPPATQKEQPQTTYRDRA 904
N+ T T V P R A+A + TP V T + + + P + QPQ T + A
Sbjct: 478 NTSTQT-VGP-RPAAAAAAAATPAVRTVPRYKYAAGVRNPQQHRNAQPQVTMQQLA 531
Score = 38 (18.4 bits), Expect = 9.9e-06, Sum P(3) = 9.9e-06
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 858 PFRTDASALGSYTPPVATGSGKRRFSEMPLPPATQK 893
PF+ SA+ P V + + S++P +TQ+
Sbjct: 440 PFQNKPSAIRPGAPRVPFSTMRPASSQVPRVMSTQR 475
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 105 (42.0 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 29/91 (31%), Positives = 50/91 (54%)
Query: 437 LGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHF 496
+G K + T+V + + + D++ L+ F K+ ++++ D T SRGF F+ +
Sbjct: 184 MGAKAKEF--TNVYI-KNFGDDMDDQRLKELFDKYGKTLSVKVMTDP-TGKSRGFGFVSY 239
Query: 497 HSVEDASKALEATNGTTLEKNGQILRVAYAK 527
EDA+KA+E NGT L NG+ + V A+
Sbjct: 240 EKHEDANKAVEEMNGTEL--NGKTVFVGRAQ 268
Score = 100 (40.3 bits), Expect = 7.3e-06, Sum P(2) = 7.3e-06
Identities = 23/62 (37%), Positives = 37/62 (59%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
L ++ LD+ D+E LR EFS I +++ ++ S+GF F+ F S E+A+KA+
Sbjct: 297 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEEGR--SKGFGFVCFSSPEEATKAVTEM 354
Query: 510 NG 511
NG
Sbjct: 355 NG 356
Score = 91 (37.1 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 19/75 (25%), Positives = 43/75 (57%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
G + +K L + + LY + +G + +V+ + N S+G+AF+ F + AA ++
Sbjct: 100 GNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIE 157
Query: 347 RIGDDGLVVDGRKLF 361
++ +G++++ RK+F
Sbjct: 158 KM--NGMLLNDRKVF 170
Score = 90 (36.7 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 21/63 (33%), Positives = 36/63 (57%)
Query: 452 VRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNG 511
++ LD+ D + L FS I ++V D+ + S+G+AF+HF + + A +A+E NG
Sbjct: 104 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKMNG 161
Query: 512 TTL 514
L
Sbjct: 162 MLL 164
Score = 84 (34.6 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 22/83 (26%), Positives = 41/83 (49%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
P ++ V L TE LY+ + GP+ +RV ++ + S G+A+++F A
Sbjct: 10 PMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERA 69
Query: 345 MDRIGDDGLVVDGRKLFFEYSSK 367
+D + D VV G+ + +S +
Sbjct: 70 LDTMNFD--VVKGKPIRIMWSQR 90
>UNIPROTKB|D6RD18 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00966854 ProteinModelPortal:D6RD18
SMR:D6RD18 Ensembl:ENST00000514633 ArrayExpress:D6RD18 Bgee:D6RD18
Uniprot:D6RD18
Length = 283
Score = 98 (39.6 bits), Expect = 2.2e-06, Sum P(3) = 2.2e-06
Identities = 24/76 (31%), Positives = 41/76 (53%)
Query: 286 SGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMM 345
+G + V GLS T+++DL ++G + + + N+G SRGF FI F + ++
Sbjct: 69 AGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL 128
Query: 346 DRIGD--DGLVVDGRK 359
D+ DG V+D +K
Sbjct: 129 DQKEHRLDGRVIDPKK 144
Score = 88 (36.0 bits), Expect = 2.2e-06, Sum P(3) = 2.2e-06
Identities = 26/84 (30%), Positives = 37/84 (44%)
Query: 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKA 505
P + V GL+ A EE +R F + I+ + L D + RGF F+ F E K
Sbjct: 152 PVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKV 211
Query: 506 LEATNGTTLEKNGQILRVAYAKSI 529
LE T +I +VA K +
Sbjct: 212 LEKKFHTVSGSKCEI-KVAQPKEV 234
Score = 39 (18.8 bits), Expect = 2.2e-06, Sum P(3) = 2.2e-06
Identities = 12/52 (23%), Positives = 18/52 (34%)
Query: 726 VANKKKLNNATMWKQWSHDNQQSASADDRPGPAGQASKTKFKSDSAATKENN 777
VA K++ + N+ + G GQ S KS +NN
Sbjct: 228 VAQPKEVYQQQQYGSGGRGNRNRGNRGSGGGGGGQGSTNYGKSQRRGGHQNN 279
>UNIPROTKB|D6R9P3 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964686 ProteinModelPortal:D6R9P3
SMR:D6R9P3 Ensembl:ENST00000515193 ArrayExpress:D6R9P3 Bgee:D6R9P3
Uniprot:D6R9P3
Length = 280
Score = 98 (39.6 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 24/76 (31%), Positives = 41/76 (53%)
Query: 286 SGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMM 345
+G + V GLS T+++DL ++G + + + N+G SRGF FI F + ++
Sbjct: 69 AGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL 128
Query: 346 DRIGD--DGLVVDGRK 359
D+ DG V+D +K
Sbjct: 129 DQKEHRLDGRVIDPKK 144
Score = 88 (36.0 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 26/84 (30%), Positives = 37/84 (44%)
Query: 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKA 505
P + V GL+ A EE +R F + I+ + L D + RGF F+ F E K
Sbjct: 152 PVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKV 211
Query: 506 LEATNGTTLEKNGQILRVAYAKSI 529
LE T +I +VA K +
Sbjct: 212 LEKKFHTVSGSKCEI-KVAQPKEV 234
>UNIPROTKB|F1PQV8 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:140886 OMA:FSEYGPT
EMBL:AAEX03026633 RefSeq:XP_549122.2 ProteinModelPortal:F1PQV8
Ensembl:ENSCAFT00000027652 GeneID:492002 KEGG:cfa:492002
Uniprot:F1PQV8
Length = 382
Score = 98 (39.6 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 22/65 (33%), Positives = 37/65 (56%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
+ ++ LDE D+E L+ EFS I +++ + +GF + F S EDA+KA++
Sbjct: 304 IYIKNLDETIDDEKLKEEFSSFGSISRAKVMVE--VGQGKGFGVVCFSSFEDATKAVDEM 361
Query: 510 NGTTL 514
NG T+
Sbjct: 362 NGRTV 366
Score = 97 (39.2 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 25/81 (30%), Positives = 47/81 (58%)
Query: 447 THVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKAL 506
T+V V + D+E L+ FS + P + ++++RD + S+GF F+ + + E A KA+
Sbjct: 199 TNVFV-KNFGNDMDDEKLKEIFSGYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAV 256
Query: 507 EATNGTTLEKNGQILRVAYAK 527
+G ++ NG++L V A+
Sbjct: 257 LDLHGKSI--NGKVLYVGRAQ 275
Score = 92 (37.4 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 24/80 (30%), Positives = 44/80 (55%)
Query: 289 IVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAA-RAMMDR 347
+ VK +E L +I + +GP V+VI++ SG S+GF F+ + + AA +A++D
Sbjct: 201 VFVKNFGNDMDDEKLKEIFSGYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259
Query: 348 IGDDGLVVDGRKLFFEYSSK 367
G ++G+ L+ + K
Sbjct: 260 HGKS---INGKVLYVGRAQK 276
Score = 74 (31.1 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 17/75 (22%), Positives = 41/75 (54%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
G I +K L + L+ + + +G + +V+ + N S+G+A++ F S+ AA +
Sbjct: 106 GNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG--SKGYAYVHFDSLAAANRAIW 163
Query: 347 RIGDDGLVVDGRKLF 361
+ +G+ ++ R+++
Sbjct: 164 HM--NGVRLNNRQVY 176
>TAIR|locus:2168848 [details] [associations]
symbol:AT5G40490 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 EMBL:AB009052 HOGENOM:HOG000234441
HSSP:Q61474 KO:K12741 eggNOG:NOG289504 EMBL:AY136466
IPI:IPI00518075 RefSeq:NP_198865.1 UniGene:At.30284
ProteinModelPortal:Q9FM47 SMR:Q9FM47 PaxDb:Q9FM47 PRIDE:Q9FM47
EnsemblPlants:AT5G40490.1 GeneID:834047 KEGG:ath:AT5G40490
TAIR:At5g40490 InParanoid:Q9FM47 OMA:YESEDMV PhylomeDB:Q9FM47
ProtClustDB:CLSN2916909 ArrayExpress:Q9FM47 Genevestigator:Q9FM47
Uniprot:Q9FM47
Length = 423
Score = 96 (38.9 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 20/78 (25%), Positives = 45/78 (57%)
Query: 283 VAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAAR 342
V +G I V GL+++TT + + ++G + ++K+R +G RGF F+ + A
Sbjct: 38 VDSAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTY----ADS 93
Query: 343 AMMDRIGDDGLVVDGRKL 360
+++D++ D ++ G+++
Sbjct: 94 SVVDKVIQDNHIIIGKQV 111
Score = 95 (38.5 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 27/93 (29%), Positives = 46/93 (49%)
Query: 435 IPLGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFL 494
IP G S+ T + V G+ D++ + F + +K+ +++RD T SRGF F+
Sbjct: 117 IPRGSMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFV 176
Query: 495 HFHSVEDASKALEATNGTTLEKNGQILRVAYAK 527
+ S ED L A G +E +G + + A+
Sbjct: 177 TYES-EDMVDHLLA-KGNRIELSGTQVEIKKAE 207
>FB|FBgn0031883 [details] [associations]
symbol:CG11266 species:7227 "Drosophila melanogaster"
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0008380 "RNA
splicing" evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014134
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 GO:GO:0000381 HSSP:Q60900
TIGRFAMs:TIGR01622 KO:K13091 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 UniGene:Dm.7322 GeneID:33989
KEGG:dme:Dmel_CG11266 FlyBase:FBgn0031883 ChiTaRS:CG11266
GenomeRNAi:33989 NextBio:786302 EMBL:AY051860 RefSeq:NP_609095.1
RefSeq:NP_723243.1 SMR:Q9VM49 IntAct:Q9VM49 MINT:MINT-745605
STRING:Q9VM49 EnsemblMetazoa:FBtr0089636 EnsemblMetazoa:FBtr0089640
UCSC:CG11266-RA InParanoid:Q9VM49 Uniprot:Q9VM49
Length = 594
Score = 131 (51.2 bits), Expect = 2.6e-06, Sum P(3) = 2.6e-06
Identities = 36/98 (36%), Positives = 51/98 (52%)
Query: 427 AEMNS-SNPIPLGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFT 485
AE N N P + S TGP L V L E+MLR F I ++L+ D T
Sbjct: 314 AEKNRLQNAAPAFQPKSHTGPMR-LYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTET 372
Query: 486 HVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRV 523
S+G+ F+ +H+ +DA KALE NG E G++++V
Sbjct: 373 GRSKGYGFITYHNADDAKKALEQLNG--FELAGRLMKV 408
Score = 62 (26.9 bits), Expect = 2.6e-06, Sum P(3) = 2.6e-06
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 288 TIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDF 335
T+ LSQ+ DL + + G +R VR+I + +G A+I+F
Sbjct: 238 TVFCIQLSQRVRARDLEEFFSSVGKVRDVRLITCNKTKRFKGIAYIEF 285
Score = 43 (20.2 bits), Expect = 2.6e-06, Sum P(3) = 2.6e-06
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 199 DRERDKRCLSRERE 212
DR RDKR SR R+
Sbjct: 167 DRSRDKRRRSRSRD 180
Score = 40 (19.1 bits), Expect = 5.2e-06, Sum P(3) = 5.2e-06
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 198 RDRERDKRCLSRERE 212
R+RERD+ SR R+
Sbjct: 123 RERERDRSRRSRSRD 137
Score = 39 (18.8 bits), Expect = 0.00063, Sum P(2) = 0.00063
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 357 GRKLFFEYSSKPTGGSGGHYGQESAMGARHSN 388
GRK S P GG GGH + G R+ +
Sbjct: 29 GRK---RSGSSP-GGGGGHDDDYAENGPRNGS 56
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 106 (42.4 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 25/76 (32%), Positives = 43/76 (56%)
Query: 452 VRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNG 511
++ E D++ L+ FSK+ +R++ D+ SRGF F+ F EDA +A++ NG
Sbjct: 195 IKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDE-NGKSRGFGFVSFERHEDAQRAVDEMNG 253
Query: 512 TTLEKNGQILRVAYAK 527
E NG+++ V A+
Sbjct: 254 K--EMNGKLIYVGRAQ 267
Score = 102 (41.0 bits), Expect = 7.1e-06, Sum P(2) = 7.1e-06
Identities = 25/62 (40%), Positives = 36/62 (58%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
L V+ LD+ D+E LR EFS I +++ D S+GF F+ F S E+A+KA+
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMDGGR--SKGFGFVCFSSPEEATKAVTEM 353
Query: 510 NG 511
NG
Sbjct: 354 NG 355
Score = 90 (36.7 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
+ ++ LD+ D + L FS I ++V D+ + S+G+ F+HF + E A +A+E
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 510 NGTTL 514
NG L
Sbjct: 159 NGMLL 163
Score = 89 (36.4 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 19/75 (25%), Positives = 42/75 (56%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
G I +K L + + LY + +G + +V+ + N S+G+ F+ F + AA ++
Sbjct: 99 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIE 156
Query: 347 RIGDDGLVVDGRKLF 361
++ +G++++ RK+F
Sbjct: 157 KM--NGMLLNDRKVF 169
Score = 85 (35.0 bits), Expect = 6.8e-06, Sum P(2) = 6.8e-06
Identities = 22/83 (26%), Positives = 41/83 (49%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
P ++ V L Q TE LY+ + G + +RV ++ + S G+A+++F A
Sbjct: 9 PMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERA 68
Query: 345 MDRIGDDGLVVDGRKLFFEYSSK 367
+D + D V+ GR + +S +
Sbjct: 69 LDTMNFD--VIKGRPVRIMWSQR 89
Score = 82 (33.9 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 19/79 (24%), Positives = 41/79 (51%)
Query: 289 IVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRI 348
+ +K + ++ L I +++G +RV+ + N G SRGF F+ F A+ +D +
Sbjct: 193 VYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDEN-GKSRGFGFVSFERHEDAQRAVDEM 251
Query: 349 GDDGLVVDGRKLFFEYSSK 367
+G ++G+ ++ + K
Sbjct: 252 --NGKEMNGKLIYVGRAQK 268
>RGD|1310888 [details] [associations]
symbol:Aggf1 "angiogenic factor with G patch and FHA domains 1"
species:10116 "Rattus norvegicus" [GO:0001938 "positive regulation
of endothelial cell proliferation" evidence=ISO] [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005576 "extracellular region" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0007155 "cell adhesion"
evidence=ISO] [GO:0008150 "biological_process" evidence=ND]
[GO:0043499 "eukaryotic cell surface binding" evidence=ISO]
[GO:0045766 "positive regulation of angiogenesis" evidence=ISO]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISO]
RGD:1310888 eggNOG:NOG270400 HOGENOM:HOG000033843
HOVERGEN:HBG050465 OrthoDB:EOG4S1T6Q IPI:IPI00763234 EMBL:BC099754
UniGene:Rn.231974 STRING:Q499U9 UCSC:RGD:1310888 InParanoid:Q499U9
Genevestigator:Q499U9 Uniprot:Q499U9
Length = 285
Score = 139 (54.0 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 29/79 (36%), Positives = 47/79 (59%)
Query: 597 QSGFVWDEASGYYYDAASGFYYDGNTGLYYDGNSGIWYSYDQQT--QQYIPCTDQNDNKT 654
Q+ F +DE++G Y+D ++GFYYD LYYD ++GI+Y D ++ Q+ D +T
Sbjct: 197 QTSFTYDESTGLYFDHSTGFYYDSENQLYYDASTGIYYYCDVESGRYQFHSRVDLQPYQT 256
Query: 655 SGNGSEPSKQVDGGSKNRK 673
S ++PSK+ K +K
Sbjct: 257 SS--TKPSKKKKKKKKKKK 273
>UNIPROTKB|Q5RBU8 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9601 "Pongo abelii" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0030529
HOVERGEN:HBG002295 CTD:3181 KO:K13158 EMBL:CR858535
RefSeq:NP_001127331.1 UniGene:Pab.19213 HSSP:P22626
ProteinModelPortal:Q5RBU8 SMR:Q5RBU8 PRIDE:Q5RBU8 GeneID:100174392
KEGG:pon:100174392 InParanoid:Q5RBU8 Uniprot:Q5RBU8
Length = 353
Score = 106 (42.4 bits), Expect = 2.7e-06, Sum P(3) = 2.7e-06
Identities = 31/83 (37%), Positives = 43/83 (51%)
Query: 289 IVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAA-RAMMDR 347
+ + GLS +TTEE L +WG L V+++ S SRGF F+ F S+ AM R
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 82
Query: 348 IGD-DGLVVDGRKLFF-EYSSKP 368
DG VV+ ++ E S KP
Sbjct: 83 PHSIDGRVVEPKRAVAREESGKP 105
Score = 77 (32.2 bits), Expect = 2.7e-06, Sum P(3) = 2.7e-06
Identities = 21/83 (25%), Positives = 37/83 (44%)
Query: 438 GKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFH 497
GK G+ L V G+ E +E LR F ++ I + ++ D+ + RGF F+ F
Sbjct: 103 GKPGAHV-TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFD 161
Query: 498 SVEDASKALEATNGTTLEKNGQI 520
+ K + + T N ++
Sbjct: 162 DHDPVDKIVLQKHHTINGHNAEV 184
Score = 45 (20.9 bits), Expect = 2.7e-06, Sum P(3) = 2.7e-06
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 615 GFYYDGNTGLYYDGNSGIWYSYDQQTQQYIPCTDQN 650
G Y + G Y GN + +Y+QQ Y P N
Sbjct: 285 GGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGN 320
>UNIPROTKB|Q96DU9 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471115 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AJ278963 EMBL:AK290105
EMBL:AL662874 EMBL:BC063113 EMBL:AL122118 IPI:IPI00061206
PIR:T34543 RefSeq:NP_543022.1 UniGene:Hs.246590
ProteinModelPortal:Q96DU9 SMR:Q96DU9 IntAct:Q96DU9 STRING:Q96DU9
PhosphoSite:Q96DU9 DMDM:28201851 PaxDb:Q96DU9 PRIDE:Q96DU9
DNASU:140886 Ensembl:ENST00000312600 GeneID:140886 KEGG:hsa:140886
UCSC:uc004efg.3 CTD:140886 GeneCards:GC0XP090689 HGNC:HGNC:13629
HPA:HPA000164 HPA:HPA000165 MIM:300407 neXtProt:NX_Q96DU9
PharmGKB:PA32884 InParanoid:Q96DU9 OMA:FSEYGPT PhylomeDB:Q96DU9
GenomeRNAi:140886 NextBio:84542 ArrayExpress:Q96DU9 Bgee:Q96DU9
CleanEx:HS_PABPC5 Genevestigator:Q96DU9 GermOnline:ENSG00000174740
Uniprot:Q96DU9
Length = 382
Score = 103 (41.3 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 25/80 (31%), Positives = 45/80 (56%)
Query: 289 IVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAA-RAMMDR 347
+ VK + +E L ++ E+GP V+VI++ SG S+GF F+ + + AA +A++D
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259
Query: 348 IGDDGLVVDGRKLFFEYSSK 367
G +DG+ L+ + K
Sbjct: 260 HGKS---IDGKVLYVGRAQK 276
Score = 95 (38.5 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 23/81 (28%), Positives = 49/81 (60%)
Query: 447 THVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKAL 506
T+V V + + + D+E L+ F ++ P + ++++RD + S+GF F+ + + E A KA+
Sbjct: 199 TNVFV-KNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAV 256
Query: 507 EATNGTTLEKNGQILRVAYAK 527
+G +++ G++L V A+
Sbjct: 257 LDLHGKSID--GKVLYVGRAQ 275
Score = 86 (35.3 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 19/62 (30%), Positives = 35/62 (56%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
+ ++ LDE ++E L+ EFS I +++ + +GF + F S E+A+KA++
Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEM 361
Query: 510 NG 511
NG
Sbjct: 362 NG 363
Score = 74 (31.1 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 17/75 (22%), Positives = 41/75 (54%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
G I +K L + L+ + + +G + +V+ + N S+G+A++ F S+ AA +
Sbjct: 106 GNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG--SKGYAYVHFDSLAAANRAIW 163
Query: 347 RIGDDGLVVDGRKLF 361
+ +G+ ++ R+++
Sbjct: 164 HM--NGVRLNNRQVY 176
>TAIR|locus:2134638 [details] [associations]
symbol:LIF2 "LHP1-Interacting Factor 2" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0010048 "vernalization response" evidence=RCA] [GO:0016558
"protein import into peroxisome matrix" evidence=RCA] [GO:0048573
"photoperiodism, flowering" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13161 UniGene:At.24279
HSSP:Q9Y5S9 EMBL:AF367357 EMBL:AY113171 EMBL:AK227578
IPI:IPI00532730 RefSeq:NP_001031566.1 RefSeq:NP_567192.1
ProteinModelPortal:Q9ASP6 SMR:Q9ASP6 PRIDE:Q9ASP6
EnsemblPlants:AT4G00830.1 EnsemblPlants:AT4G00830.2 GeneID:827998
KEGG:ath:AT4G00830 TAIR:At4g00830 HOGENOM:HOG000243749
InParanoid:Q9ASP6 PhylomeDB:Q9ASP6 ProtClustDB:CLSN2698006
Genevestigator:Q9ASP6 Uniprot:Q9ASP6
Length = 495
Score = 107 (42.7 bits), Expect = 2.9e-06, Sum P(3) = 2.9e-06
Identities = 22/68 (32%), Positives = 42/68 (61%)
Query: 282 AVAPSGT-IVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGA 340
++ P G+ + + GL + EEDL + E G + VR++K+R+SG S+G+AF+ F +
Sbjct: 110 SLPPHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDV 169
Query: 341 ARAMMDRI 348
A+ ++ +
Sbjct: 170 AQKAIEEL 177
Score = 82 (33.9 bits), Expect = 2.9e-06, Sum P(3) = 2.9e-06
Identities = 30/124 (24%), Positives = 48/124 (38%)
Query: 404 CVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKGSDTGPTHVLVVRGLDEYADEEM 463
C +++R+ N +AP P + + L V+ + E E
Sbjct: 251 CADYSRQ-KMIDSNFKLEGNAPTVTWADPKSSP--EHSAAAAQVKALYVKNIPENTSTEQ 307
Query: 464 LRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRV 523
L+ F +H + ++V R F F+H+ A KA++ T E NGQ L V
Sbjct: 308 LKELFQRHGEVT--KIVTPPGKGGKRDFGFVHYAERSSALKAVKDTE--RYEVNGQPLEV 363
Query: 524 AYAK 527
AK
Sbjct: 364 VLAK 367
Score = 45 (20.9 bits), Expect = 2.9e-06, Sum P(3) = 2.9e-06
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 648 DQNDNKTSGNGSEPSKQVDGGSKNRK 673
D+N+ + G+G + S + DG R+
Sbjct: 466 DRNNGSSGGSGRDNSHEHDGNRGGRR 491
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 102 (41.0 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 30/91 (32%), Positives = 50/91 (54%)
Query: 437 LGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHF 496
LG K + T+V + + E D+E LR FS+ ++++RD + S+GF F+ +
Sbjct: 112 LGAKAKEF--TNVYI-KNFGEEVDDENLRELFSQFGKTLSVKVMRD-CSGKSKGFGFVSY 167
Query: 497 HSVEDASKALEATNGTTLEKNGQILRVAYAK 527
EDA+KA+E NG E +G+ + V A+
Sbjct: 168 EKHEDANKAVEEMNGK--EMSGKSIFVGRAQ 196
Score = 98 (39.6 bits), Expect = 7.7e-06, Sum P(2) = 7.7e-06
Identities = 23/62 (37%), Positives = 36/62 (58%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
L ++ LD+ D+E LR EFS I +++ + S+GF F+ F S E+A+KA+
Sbjct: 225 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEM 282
Query: 510 NG 511
NG
Sbjct: 283 NG 284
Score = 92 (37.4 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 19/75 (25%), Positives = 43/75 (57%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
G + +K L + + LY + +G + +V+ + N S+G+AF+ F + AA ++
Sbjct: 28 GNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAANKAIE 85
Query: 347 RIGDDGLVVDGRKLF 361
++ +G++++ RK+F
Sbjct: 86 KM--NGMLLNDRKVF 98
Score = 80 (33.2 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 17/79 (21%), Positives = 43/79 (54%)
Query: 289 IVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRI 348
+ +K ++ +E+L ++ +++G V+V+++ SG S+GF F+ + A ++ +
Sbjct: 122 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKAVEEM 180
Query: 349 GDDGLVVDGRKLFFEYSSK 367
+G + G+ +F + K
Sbjct: 181 --NGKEMSGKSIFVGRAQK 197
>DICTYBASE|DDB_G0290745 [details] [associations]
symbol:pabpc1B "putative polyadenylate binding
protein (PABP)" species:44689 "Dictyostelium discoideum"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS] [GO:0005737
"cytoplasm" evidence=IEA;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0290745 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378
GenomeReviews:CM000154_GR eggNOG:COG0724 EMBL:AAFI02000169
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
RefSeq:XP_001134510.1 ProteinModelPortal:Q1ZXC2 SMR:Q1ZXC2
EnsemblProtists:DDB0233386 GeneID:8627795 KEGG:ddi:DDB_G0290745
OMA:NAIASIH Uniprot:Q1ZXC2
Length = 814
Score = 126 (49.4 bits), Expect = 2.9e-06, Sum P(3) = 2.9e-06
Identities = 22/64 (34%), Positives = 42/64 (65%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
L + +DE D ++++ EF+KH I +++V+D+ ++GF F+ F +++A KAL++
Sbjct: 472 LFINNIDESIDRDLIKEEFAKHGTIIGIKIVQDENAR-NKGFGFISFSEIQEAQKALDSL 530
Query: 510 NGTT 513
NG T
Sbjct: 531 NGFT 534
Score = 75 (31.5 bits), Expect = 2.9e-06, Sum P(3) = 2.9e-06
Identities = 20/82 (24%), Positives = 42/82 (51%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
G I VK L + LY + +G + +V E G+S+G+ ++ F + +A ++
Sbjct: 274 GNIFVKNLEKGVDNAMLYDTFSSFGNILSCKV--EFEKGISKGYGYVHFETNDSAEKAIE 331
Query: 347 RIGDDGLVVDGRKLFFE-YSSK 367
++ +G ++ G+ + E + SK
Sbjct: 332 KV--NGTLILGKPINVERFVSK 351
Score = 40 (19.1 bits), Expect = 2.9e-06, Sum P(3) = 2.9e-06
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 627 DGNSGIWYSYDQQTQQYIPCTDQN--DNKTSGNGSEPSKQV-DGGS 669
D +G + +Q Q D N +NK +GN ++ +K + GG+
Sbjct: 528 DSLNGFTFG-SKQIQVSFSNKDNNQINNKLNGNSTKITKNIIQGGA 572
>UNIPROTKB|F1SPQ9 [details] [associations]
symbol:RBM6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000467 InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR015880 Pfam:PF01585 PROSITE:PS50102 PROSITE:PS50174
SMART:SM00355 SMART:SM00360 SMART:SM00443 GO:GO:0005634
GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00510000046476 CTD:10180 OMA:YDLDFRG EMBL:CU861627
EMBL:FP085495 RefSeq:XP_003483235.1 Ensembl:ENSSSCT00000012472
GeneID:100515053 KEGG:ssc:100515053 Uniprot:F1SPQ9
Length = 1120
Score = 90 (36.7 bits), Expect = 3.0e-06, Sum P(5) = 3.0e-06
Identities = 21/57 (36%), Positives = 30/57 (52%)
Query: 567 KEYNPDDKQPTRGQEQRSDGDMVQKDGLALQSG-FVWDEASGYYYDAASGFYYDGNT 622
K+Y D + R + SD + G S +++D A+GYYYD +G YYD NT
Sbjct: 757 KKYFRDRRGGGRNSDWSSD---TNRQGQQSSSDCYIYDSATGYYYDPLAGTYYDPNT 810
Score = 87 (35.7 bits), Expect = 5.9e-06, Sum P(5) = 5.9e-06
Identities = 20/63 (31%), Positives = 31/63 (49%)
Query: 608 YYYDAASGFYYDGNTGLYYDGNSGIWYSYDQQTQQYIPCTDQNDNKTSGNGSEPSKQVDG 667
Y YD+A+G+YYD G YYD N+ Q + Y+P ++ + +P+ Q
Sbjct: 788 YIYDSATGYYYDPLAGTYYDPNT--------QQEVYVPQDPESPEEEEIKEKKPTSQGKS 839
Query: 668 GSK 670
SK
Sbjct: 840 SSK 842
Score = 82 (33.9 bits), Expect = 3.0e-06, Sum P(5) = 3.0e-06
Identities = 25/90 (27%), Positives = 47/90 (52%)
Query: 442 SDTGPTHVLVVRGLDEYAD-EEMLR-YEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSV 499
S+ P+ ++ + G+ E A EE+L + P+KDL+L ++ T G+ + F +
Sbjct: 450 SEEKPSKLIRLSGVPENATKEEILNAFRTPDGMPVKDLQL-KEFNTGYDYGYVCVEFSLL 508
Query: 500 EDASKALEATNGTTLEKNGQILRVAYAKSI 529
EDA +EA GT + + ++ + Y S+
Sbjct: 509 EDAIGCMEANQGTLMIHDKEVT-LEYVPSL 537
Score = 74 (31.1 bits), Expect = 3.0e-06, Sum P(5) = 3.0e-06
Identities = 16/80 (20%), Positives = 40/80 (50%)
Query: 969 KAIDENNVGNRMLRSMGWHEGLGLGKDGSGMIEPVQAQAMDSRAGLGSQQKKVDPSLEVQ 1028
+ ID ++ G + ++ GW +G GLG G+ + + +G+ + + + Q
Sbjct: 1044 EGIDNSSKGGCVQQATGWRKGTGLGYGHLGLASAEETEGRIRGPSVGAPGR----TSKRQ 1099
Query: 1029 AGDSYKTLIHKKALARFREM 1048
+ ++Y+ + + AR++E+
Sbjct: 1100 SNETYRDAVRRVMFARYKEL 1119
Score = 74 (31.1 bits), Expect = 1.7e-05, Sum P(5) = 1.7e-05
Identities = 25/95 (26%), Positives = 45/95 (47%)
Query: 286 SGTIVVKGLSQKTTEEDLYQILAEWGPLR--HVRVIKERNSGVSRGFAFIDFPSVGAARA 343
S TI++K + + T E + ++L + L +VR+IK R + + FID S A
Sbjct: 653 SKTIMLKRIYRSTPPEVIVEVLEPYVRLTTANVRIIKNRTGPMGHTYGFIDLDSHAEALR 712
Query: 344 MMDRIG--DDGLVVDGRKLFFEYSS-KPTGGSGGH 375
++ + D +DG+ + ++ K SG H
Sbjct: 713 VVKILQNLDPPFSIDGKMVAVNLATGKRRNDSGDH 747
Score = 63 (27.2 bits), Expect = 0.00018, Sum P(5) = 0.00018
Identities = 18/82 (21%), Positives = 41/82 (50%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILA--EWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAAR 342
PS I + G+ + T+E++ + P++ ++ +KE N+G G+ ++F + A
Sbjct: 454 PSKLIRLSGVPENATKEEILNAFRTPDGMPVKDLQ-LKEFNTGYDYGYVCVEFSLLEDAI 512
Query: 343 AMMDRIGDDGLVVDGRKLFFEY 364
M+ L++ +++ EY
Sbjct: 513 GCMEA-NQGTLMIHDKEVTLEY 533
Score = 48 (22.0 bits), Expect = 0.00060, Sum P(4) = 0.00060
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 878 GKRRFSEMPLPPATQKEQPQTTYRDRAAERRSLY 911
G+ R + P T K Q TYRD A RR ++
Sbjct: 1082 GRIRGPSVGAPGRTSKRQSNETYRD--AVRRVMF 1113
Score = 46 (21.3 bits), Expect = 3.0e-06, Sum P(5) = 3.0e-06
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 60 NYPPPPVGLWPQSRRR-NYEEDYSLDRESRRHEKP 93
+YPPPP+ Q R N+ SL + + H P
Sbjct: 29 DYPPPPLKSHVQERHSGNFPGRDSLPFDFQGHSGP 63
Score = 45 (20.9 bits), Expect = 2.1e-05, Sum P(5) = 2.1e-05
Identities = 12/49 (24%), Positives = 23/49 (46%)
Query: 52 PRNAFQRENYPPPPVGLWPQSRRRNYEEDYSLDRESRRHEKPYIDSYHE 100
P + ++ + PP P+ R+R ++ L + R E+ Y+ S E
Sbjct: 583 PAPSEKQPSQPPRSADKEPEPRKREEGQEPRLGHQKREAER-YLPSRRE 630
Score = 38 (18.4 bits), Expect = 3.0e-06, Sum P(5) = 3.0e-06
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 886 PLPPATQKEQ 895
PLPP +KE+
Sbjct: 879 PLPPTVKKEE 888
>UNIPROTKB|I3LH22 [details] [associations]
symbol:LOC100514264 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:CU915617
Ensembl:ENSSSCT00000023009 OMA:QALEDHI Uniprot:I3LH22
Length = 161
Score = 120 (47.3 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 31/83 (37%), Positives = 48/83 (57%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
L V GL+ +D++ L S PI ++ +V+D+ T SRGF F+ F + E AS + A
Sbjct: 8 LFVGGLNFNSDKQALEDHISSFRPISEVVIVKDRETQRSRGFGFITFTNPEHASNVMRAM 67
Query: 510 NGTTLEKNGQILRVAYA-KSILG 531
NG +L+ G+ + V +A KS G
Sbjct: 68 NGESLD--GRQIHVDHAGKSAQG 88
>UNIPROTKB|Q3ZC44 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 OMA:FILFKDP EMBL:DAAA02020063
EMBL:DAAA02020062 EMBL:BC102923 IPI:IPI00843025
RefSeq:NP_001035612.1 UniGene:Bt.58979 SMR:Q3ZC44
Ensembl:ENSBTAT00000018114 GeneID:513410 KEGG:bta:513410
NextBio:20870841 Uniprot:Q3ZC44
Length = 285
Score = 96 (38.9 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 24/76 (31%), Positives = 41/76 (53%)
Query: 286 SGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMM 345
+G + V GLS T+++DL ++G + + + N+G SRGF FI F + ++
Sbjct: 69 AGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDATSVEKVL 128
Query: 346 DRIGD--DGLVVDGRK 359
D+ DG V+D +K
Sbjct: 129 DQKEHRLDGRVIDPKK 144
Score = 89 (36.4 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 26/84 (30%), Positives = 38/84 (45%)
Query: 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKA 505
P + V GL+ A EE +R F + I+ + L D ++ RGF F+ F E K
Sbjct: 152 PVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKKV 211
Query: 506 LEATNGTTLEKNGQILRVAYAKSI 529
LE T +I +VA K +
Sbjct: 212 LEKKFHTISGSKCEI-KVAQPKEV 234
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 104 (41.7 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 30/91 (32%), Positives = 50/91 (54%)
Query: 437 LGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHF 496
LG K + T+V + + E D+E L+ FS+ ++++RD S+GF F+ +
Sbjct: 183 LGAKAKEF--TNVYI-KNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSY 238
Query: 497 HSVEDASKALEATNGTTLEKNGQILRVAYAK 527
EDA+KA+E NG E +G+I+ V A+
Sbjct: 239 EKHEDANKAVEEMNGK--EISGKIIFVGRAQ 267
Score = 98 (39.6 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 23/62 (37%), Positives = 36/62 (58%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
L ++ LD+ D+E LR EFS I +++ + S+GF F+ F S E+A+KA+
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEM 353
Query: 510 NG 511
NG
Sbjct: 354 NG 355
Score = 96 (38.9 bits), Expect = 7.3e-05, Sum P(2) = 7.3e-05
Identities = 23/63 (36%), Positives = 36/63 (57%)
Query: 452 VRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNG 511
++ LD+ D + L FS I ++V D+ + S+G+AF+HF + E A KA+E NG
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 512 TTL 514
L
Sbjct: 161 MLL 163
Score = 90 (36.7 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 19/75 (25%), Positives = 43/75 (57%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
G + +K L + + LY + +G + +V+ + N S+G+AF+ F + AA ++
Sbjct: 99 GNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIE 156
Query: 347 RIGDDGLVVDGRKLF 361
++ +G++++ RK+F
Sbjct: 157 KM--NGMLLNDRKVF 169
Score = 85 (35.0 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 21/83 (25%), Positives = 41/83 (49%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
P ++ V L TE LY+ + GP+ +RV ++ + S G+A+++F A
Sbjct: 9 PMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERA 68
Query: 345 MDRIGDDGLVVDGRKLFFEYSSK 367
+D + D V+ G+ + +S +
Sbjct: 69 LDTMNFD--VIKGKPIRIMWSQR 89
Score = 81 (33.6 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 17/79 (21%), Positives = 42/79 (53%)
Query: 289 IVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRI 348
+ +K ++ +E L ++ +++G V+V+++ N G S+GF F+ + A ++ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEM 251
Query: 349 GDDGLVVDGRKLFFEYSSK 367
+G + G+ +F + K
Sbjct: 252 --NGKEISGKIIFVGRAQK 268
>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
symbol:cirbp "cold inducible RNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
Uniprot:F1R6L3
Length = 224
Score = 136 (52.9 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 32/95 (33%), Positives = 53/95 (55%)
Query: 283 VAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAAR 342
++ G + + GLS TTE+ L + +++G + V VI++R + SRGF F+ F + A+
Sbjct: 19 MSDEGKLFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAK 78
Query: 343 AMMDRIGDDGLVVDGRKLFFEYSSKPTGGSGGHYG 377
M + +G VDGR + + + K G SGG G
Sbjct: 79 DAMAAM--NGKQVDGRMIRVDEAGKSGGRSGGFRG 111
Score = 122 (48.0 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 31/82 (37%), Positives = 46/82 (56%)
Query: 442 SDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVED 501
SD G L + GL E+ L FSK+ I + ++RD+ T SRGF F+ F + ED
Sbjct: 20 SDEGK---LFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPED 76
Query: 502 ASKALEATNGTTLEKNGQILRV 523
A A+ A NG ++ G+++RV
Sbjct: 77 AKDAMAAMNGKQVD--GRMIRV 96
Score = 37 (18.1 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 17/63 (26%), Positives = 23/63 (36%)
Query: 567 KEYNPDDKQPTRGQEQRSDGDMVQKDGLALQSGFVWDEASGY-YYDAASGFYYDGNTGLY 625
+ Y D+ G+ GD G S +SG Y D + YD + G Y
Sbjct: 154 RSYGGGDRGYGGGERSYGGGDRSYGGGGGGYSNRSGGYSSGGGYRDNRNQGGYDRSGGSY 213
Query: 626 YDG 628
DG
Sbjct: 214 RDG 216
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 104 (41.7 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 25/62 (40%), Positives = 38/62 (61%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
L V+ LD+ D+E LR EFS + I +++ + H S+GF F+ F S E+A+KA+
Sbjct: 296 LYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEG-GH-SKGFGFVCFSSPEEATKAVTEM 353
Query: 510 NG 511
NG
Sbjct: 354 NG 355
Score = 104 (41.7 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 27/78 (34%), Positives = 45/78 (57%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
+ V+ L DE+ L+ FS+ + ++++RD H SRGF F++F E+A KA+
Sbjct: 193 IYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGH-SRGFGFVNFEKHEEAQKAVVNM 251
Query: 510 NGTTLEKNGQILRVAYAK 527
NG E +G++L V A+
Sbjct: 252 NGR--EVSGRLLYVGRAQ 267
Score = 96 (38.9 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 26/79 (32%), Positives = 41/79 (51%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
+ ++ L++ D + L FS I ++V D+ H SRGF F+HF + E A A+
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDE--HGSRGFGFVHFETHEAAQNAISTM 158
Query: 510 NGTTLEKNGQILRVAYAKS 528
NG L N + + V + KS
Sbjct: 159 NGMLL--NDRKVFVGHFKS 175
Score = 90 (36.7 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 24/79 (30%), Positives = 43/79 (54%)
Query: 289 IVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRI 348
I VK L E+ L + +++G + V+V+++ +SG SRGF F++F A+ + +
Sbjct: 193 IYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRD-DSGHSRGFGFVNFEKHEEAQKAV--V 249
Query: 349 GDDGLVVDGRKLFFEYSSK 367
+G V GR L+ + K
Sbjct: 250 NMNGREVSGRLLYVGRAQK 268
Score = 83 (34.3 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 20/75 (26%), Positives = 40/75 (53%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
G I +K L + LY + +G + +V+ + + SRGF F+ F + AA+ +
Sbjct: 99 GNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG--SRGFGFVHFETHEAAQNAIS 156
Query: 347 RIGDDGLVVDGRKLF 361
+ +G++++ RK+F
Sbjct: 157 TM--NGMLLNDRKVF 169
Score = 83 (34.3 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 22/86 (25%), Positives = 42/86 (48%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
P ++ V L TE LY+ + GP+ +RV ++ + S G+A+I+F A
Sbjct: 9 PLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERA 68
Query: 345 MDRIGDDGLVVDGRKLFFEYSSKPTG 370
+D + + V+ G+ + +S + G
Sbjct: 69 LDTMNFE--VIKGQPIRIMWSQRDPG 92
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 104 (41.7 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 29/91 (31%), Positives = 51/91 (56%)
Query: 437 LGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHF 496
LG K + T+V + + E D+E L+ FS+ ++++RD + S+GF F+ +
Sbjct: 183 LGAKAKEF--TNVYI-KNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSY 238
Query: 497 HSVEDASKALEATNGTTLEKNGQILRVAYAK 527
EDA+KA+E NG E +G+++ V A+
Sbjct: 239 EKHEDANKAVEEMNGK--EISGKVIFVGRAQ 267
Score = 98 (39.6 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 23/62 (37%), Positives = 36/62 (58%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
L ++ LD+ D+E LR EFS I +++ + S+GF F+ F S E+A+KA+
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEM 353
Query: 510 NG 511
NG
Sbjct: 354 NG 355
Score = 96 (38.9 bits), Expect = 7.7e-05, Sum P(2) = 7.7e-05
Identities = 23/63 (36%), Positives = 36/63 (57%)
Query: 452 VRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNG 511
++ LD+ D + L FS I ++V D+ + S+G+AF+HF + E A KA+E NG
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 512 TTL 514
L
Sbjct: 161 MLL 163
Score = 90 (36.7 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 19/75 (25%), Positives = 43/75 (57%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
G + +K L + + LY + +G + +V+ + N S+G+AF+ F + AA ++
Sbjct: 99 GNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIE 156
Query: 347 RIGDDGLVVDGRKLF 361
++ +G++++ RK+F
Sbjct: 157 KM--NGMLLNDRKVF 169
Score = 85 (35.0 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 21/83 (25%), Positives = 41/83 (49%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
P ++ V L TE LY+ + GP+ +RV ++ + S G+A+++F A
Sbjct: 9 PMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERA 68
Query: 345 MDRIGDDGLVVDGRKLFFEYSSK 367
+D + D V+ G+ + +S +
Sbjct: 69 LDTMNFD--VIKGKPIRIMWSQR 89
Score = 80 (33.2 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 17/79 (21%), Positives = 42/79 (53%)
Query: 289 IVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRI 348
+ +K ++ +E L ++ +++G V+V+++ SG S+GF F+ + A ++ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 349 GDDGLVVDGRKLFFEYSSK 367
+G + G+ +F + K
Sbjct: 252 --NGKEISGKVIFVGRAQK 268
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 104 (41.7 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 30/91 (32%), Positives = 50/91 (54%)
Query: 437 LGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHF 496
LG K + T+V + + E D+E L+ FS+ ++++RD S+GF F+ +
Sbjct: 183 LGAKAKEF--TNVYI-KNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSY 238
Query: 497 HSVEDASKALEATNGTTLEKNGQILRVAYAK 527
EDA+KA+E NG E +G+I+ V A+
Sbjct: 239 EKHEDANKAVEEMNGK--EISGKIIFVGRAQ 267
Score = 98 (39.6 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 23/62 (37%), Positives = 36/62 (58%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
L ++ LD+ D+E LR EFS I +++ + S+GF F+ F S E+A+KA+
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEM 353
Query: 510 NG 511
NG
Sbjct: 354 NG 355
Score = 96 (38.9 bits), Expect = 8.1e-05, Sum P(2) = 8.1e-05
Identities = 23/63 (36%), Positives = 36/63 (57%)
Query: 452 VRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNG 511
++ LD+ D + L FS I ++V D+ + S+G+AF+HF + E A KA+E NG
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 512 TTL 514
L
Sbjct: 161 MLL 163
Score = 90 (36.7 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 19/75 (25%), Positives = 43/75 (57%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
G + +K L + + LY + +G + +V+ + N S+G+AF+ F + AA ++
Sbjct: 99 GNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIE 156
Query: 347 RIGDDGLVVDGRKLF 361
++ +G++++ RK+F
Sbjct: 157 KM--NGMLLNDRKVF 169
Score = 85 (35.0 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 21/83 (25%), Positives = 41/83 (49%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
P ++ V L TE LY+ + GP+ +RV ++ + S G+A+++F A
Sbjct: 9 PMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERA 68
Query: 345 MDRIGDDGLVVDGRKLFFEYSSK 367
+D + D V+ G+ + +S +
Sbjct: 69 LDTMNFD--VIKGKPIRIMWSQR 89
Score = 81 (33.6 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 17/79 (21%), Positives = 42/79 (53%)
Query: 289 IVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRI 348
+ +K ++ +E L ++ +++G V+V+++ N G S+GF F+ + A ++ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEM 251
Query: 349 GDDGLVVDGRKLFFEYSSK 367
+G + G+ +F + K
Sbjct: 252 --NGKEISGKIIFVGRAQK 268
>UNIPROTKB|K7EQR7 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
Length = 202
Score = 132 (51.5 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 32/97 (32%), Positives = 53/97 (54%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
G + V GLS T E+ L Q+ +++G + V V+K+R + SRGF F+ F ++ A+ M
Sbjct: 6 GKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM- 64
Query: 347 RIGDDGLVVDGRKLFFEYSSKPTGGSGGHYGQESAMG 383
+ +G VDGR++ + + K + Y SA G
Sbjct: 65 -MAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGG 100
Score = 126 (49.4 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 32/85 (37%), Positives = 50/85 (58%)
Query: 442 SDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVED 501
SD G L V GL +E+ L FSK+ I ++ +V+D+ T SRGF F+ F +++D
Sbjct: 3 SDEGK---LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 502 ASKALEATNGTTLEKNGQILRVAYA 526
A A+ A NG +++ G+ +RV A
Sbjct: 60 AKDAMMAMNGKSVD--GRQIRVDQA 82
Score = 37 (18.1 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 10/29 (34%), Positives = 11/29 (37%)
Query: 925 GSGDSNRDFALKKGSVDSMPFPPGVGGRG 953
G NR + GS F G GRG
Sbjct: 83 GKSSDNRSRGYRGGSAGGRGFFRGGRGRG 111
>UNIPROTKB|D3ZZM1 [details] [associations]
symbol:Taf15 "Protein Taf15" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001876
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00641 PROSITE:PS01358
PROSITE:PS50102 PROSITE:PS50199 SMART:SM00360 SMART:SM00547
RGD:1309595 GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005622 EMBL:AC119615 IPI:IPI00950003
ProteinModelPortal:D3ZZM1 Ensembl:ENSRNOT00000064396
ArrayExpress:D3ZZM1 Uniprot:D3ZZM1
Length = 558
Score = 138 (53.6 bits), Expect = 3.6e-06, Sum P(3) = 3.6e-06
Identities = 44/160 (27%), Positives = 77/160 (48%)
Query: 286 SGTIVVKGLSQKTTEEDLYQILAEWGPLRH--------VRVIKERNSGVSRGFAFIDFPS 337
+ TI V+GL + + + + + + G ++ + + ++++G +G A + F
Sbjct: 231 NNTIFVQGLGEGVSTDQVGEFFKQIGIIKTNKKTGKPMINLYTDKDTGKPKGEATVSFDD 290
Query: 338 VGAARAMMDRIGDDGLVVDGRKLFFEYSSK-PT----GGSGG-HYGQESAMGARHSNHKS 391
+A+A +D DG G + ++++ P GGSGG G+ G +
Sbjct: 291 PPSAKAAIDWF--DGKEFHGNIIKVSFATRRPEFMRGGGSGGGRRGRGGYRGRGGFQGRG 348
Query: 392 TIPC--DWMCT--ICGCVNFARRTSCFQCNEARTDDAPPA 427
P DW+C CG +NFARR SC QCNE R +D+ P+
Sbjct: 349 GDPKNGDWVCPNPSCGNMNFARRNSCNQCNEPRPEDSRPS 388
Score = 50 (22.7 bits), Expect = 3.6e-06, Sum P(3) = 3.6e-06
Identities = 40/148 (27%), Positives = 57/148 (38%)
Query: 6 YGLQ----QGWDNNSALEGYG----AIHEPNFRVGGSYDERRFLDERY-SRDNIYPRNAF 56
YG Q QG N + G G + + ++ SYD++ D+ S D N
Sbjct: 78 YGQQSYNNQGQQNTESSGGQGGRAPSYGQSDYGQQDSYDQQSGYDQHQGSYDE--QSNYQ 135
Query: 57 QRENYPPPPVGLWPQSRRRNYEEDYSLDRE--SRRHE--KPYIDSYHEMDAYCGHEIDSF 112
Q ++Y PQ R NY DR SR E + Y S G++ D
Sbjct: 136 QHDSYNQNQQSYHPQ--RENYSHHTQDDRRDMSRYGEDNRGYGGSQGGGRGRGGYDKDGR 193
Query: 113 -PEFDKF---RDGYRNIENYRDHGFERP 136
P R G++N +RD+G RP
Sbjct: 194 GPMTGSSGGDRGGFKNFGGHRDYG-PRP 220
Score = 45 (20.9 bits), Expect = 3.6e-06, Sum P(3) = 3.6e-06
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 599 GFVWDEASGYYYDAASGFYYDGN-TGLYYDGNSGIWYSYDQ 638
G+ D + G Y SG Y G+ +G Y G+ G Y D+
Sbjct: 424 GYGGDRSGGSYGADRSGGGYGGDRSGGGYGGDRGGGYGGDR 464
Score = 43 (20.2 bits), Expect = 5.7e-06, Sum P(3) = 5.7e-06
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 603 DEASGYYYDAASGFYYDGNTGLYYDGNSG 631
D + G Y SG Y G+ G Y G+ G
Sbjct: 437 DRSGGGYGGDRSGGGYGGDRGGGYGGDRG 465
>UNIPROTKB|Q9TTV2 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9490 "Saguinus oedipus" [GO:0030529
"ribonucleoprotein complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
GO:GO:0030529 HOVERGEN:HBG002295 HSSP:P22626 EMBL:AF192348
ProteinModelPortal:Q9TTV2 SMR:Q9TTV2 Uniprot:Q9TTV2
Length = 341
Score = 106 (42.4 bits), Expect = 3.6e-06, Sum P(3) = 3.6e-06
Identities = 31/83 (37%), Positives = 43/83 (51%)
Query: 289 IVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAA-RAMMDR 347
+ + GLS +TTEE L +WG L V+++ S SRGF F+ F S+ AM R
Sbjct: 11 LFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 70
Query: 348 IGD-DGLVVDGRKLFF-EYSSKP 368
DG VV+ ++ E S KP
Sbjct: 71 PHSIDGRVVEPKRAVAREESGKP 93
Score = 75 (31.5 bits), Expect = 3.6e-06, Sum P(3) = 3.6e-06
Identities = 19/67 (28%), Positives = 32/67 (47%)
Query: 438 GKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFH 497
GK G+ L V G+ E +E LR F+++ I + ++ D+ + RGF F+ F
Sbjct: 91 GKPGAHV-TVKKLFVGGIKEDTEEHHLRDYFAEYGKIDTIEIITDRQSGKKRGFGFVTFD 149
Query: 498 SVEDASK 504
+ K
Sbjct: 150 DHDPVDK 156
Score = 45 (20.9 bits), Expect = 3.6e-06, Sum P(3) = 3.6e-06
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 615 GFYYDGNTGLYYDGNSGIWYSYDQQTQQYIPCTDQN 650
G Y + G Y GN + +Y+QQ Y P N
Sbjct: 273 GGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGN 308
>ZFIN|ZDB-GENE-030131-2420 [details] [associations]
symbol:srsf2b "serine/arginine-rich splicing
factor 2b" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2420
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
HOVERGEN:HBG107480 eggNOG:NOG254270 GeneTree:ENSGT00700000104403
HOGENOM:HOG000276233 OrthoDB:EOG4D26RH EMBL:CU463857 EMBL:BC065971
IPI:IPI00484778 UniGene:Dr.77943 SMR:Q6NZT9 STRING:Q6NZT9
Ensembl:ENSDART00000017706 Ensembl:ENSDART00000105586
InParanoid:Q6NZT9 OMA:YVEMESA Uniprot:Q6NZT9
Length = 220
Score = 134 (52.2 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 33/90 (36%), Positives = 47/90 (52%)
Query: 438 GKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFH 497
G+ D L V L E LR F K+ + D+ + RD++T SRGFAF+ FH
Sbjct: 4 GRPPPDVDGMTSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFH 63
Query: 498 SVEDASKALEATNGTTLEKNGQILRVAYAK 527
DA A++A +G L+ G+ LRV A+
Sbjct: 64 DKRDAEDAMDAMDGAILD--GRELRVQMAR 91
Score = 126 (49.4 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 36/115 (31%), Positives = 58/115 (50%)
Query: 288 TIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDR 347
++ V L+ +T+ E L ++ ++G + V + ++R + SRGFAF+ F A MD
Sbjct: 15 SLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 74
Query: 348 IGDDGLVVDGRKLFFE---YSSKPT----GGSGGHYGQESAMGAR-HSNHKSTIP 394
+ DG ++DGR+L + Y P GG GG G G+R H +S P
Sbjct: 75 M--DGAILDGRELRVQMARYGRPPDSYYGGGGGGRRGSGGGGGSRRHGARRSRSP 127
>TAIR|locus:2046298 [details] [associations]
symbol:emb2444 "embryo defective 2444" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002685 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC006135 HSSP:P11940
KO:K12831 EMBL:AY150466 IPI:IPI00516901 PIR:B84565
RefSeq:NP_179441.1 UniGene:At.20306 ProteinModelPortal:Q9ZU66
SMR:Q9ZU66 STRING:Q9ZU66 PRIDE:Q9ZU66 EnsemblPlants:AT2G18510.1
GeneID:816366 KEGG:ath:AT2G18510 TAIR:At2g18510 InParanoid:Q9ZU66
OMA:FIEYRSE PhylomeDB:Q9ZU66 ProtClustDB:CLSN2683050
Genevestigator:Q9ZU66 Uniprot:Q9ZU66
Length = 363
Score = 107 (42.7 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 34/95 (35%), Positives = 47/95 (49%)
Query: 439 KKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPI-KDLRLVRDKFTHVSRGFAFLHFH 497
KK D G L + LD DE++L FS I + +++RD T SRGF F+ +
Sbjct: 105 KKSLDVGAN--LFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYD 162
Query: 498 SVEDASKALEATNGTTLEKNGQI-LRVAYAKSILG 531
S E + A+E+ G L N QI + AY K G
Sbjct: 163 SFEASDAAIESMTGQYLS-NRQITVSYAYKKDTKG 196
Score = 80 (33.2 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 16/50 (32%), Positives = 32/50 (64%)
Query: 288 TIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPS 337
T+ V GL + +EE L+++ + GP+ +V V K+R + + + + FI++ S
Sbjct: 26 TVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRS 75
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 110 (43.8 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 29/78 (37%), Positives = 44/78 (56%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
+ V+ L DE L+ FS+ I ++++RD H SRGF F++F EDA KA+
Sbjct: 193 IYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDSGH-SRGFGFVNFEKHEDAQKAVTDM 251
Query: 510 NGTTLEKNGQILRVAYAK 527
NG E +G++L V A+
Sbjct: 252 NGK--EVSGRLLYVGRAQ 267
Score = 101 (40.6 bits), Expect = 6.5e-06, Sum P(2) = 6.5e-06
Identities = 24/62 (38%), Positives = 38/62 (61%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
L V+ LD+ D+E LR EF+ + I +++ + H S+GF F+ F S E+A+KA+
Sbjct: 296 LYVKNLDDSIDDEKLRKEFAPYGMITSAKVMTEG-GH-SKGFGFVCFSSPEEATKAVTEM 353
Query: 510 NG 511
NG
Sbjct: 354 NG 355
Score = 93 (37.8 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 26/77 (33%), Positives = 39/77 (50%)
Query: 452 VRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNG 511
++ L++ D + L FS I ++V D H SRGF F+HF + E A A+ NG
Sbjct: 103 IKNLEDSIDNKALYDTFSTFGNILSCKVVCDD--HGSRGFGFVHFETHEAAQNAIRTMNG 160
Query: 512 TTLEKNGQILRVAYAKS 528
L N + + V + KS
Sbjct: 161 MLL--NDRKVFVGHFKS 175
Score = 90 (36.7 bits), Expect = 6.5e-06, Sum P(2) = 6.5e-06
Identities = 26/80 (32%), Positives = 43/80 (53%)
Query: 289 IVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPS-VGAARAMMDR 347
I VK L E L + +++G + V+V+++ +SG SRGF F++F A +A+ D
Sbjct: 193 IYVKNLHVDVDERCLQDLFSQFGKILSVKVMRD-DSGHSRGFGFVNFEKHEDAQKAVTDM 251
Query: 348 IGDDGLVVDGRKLFFEYSSK 367
G + V GR L+ + K
Sbjct: 252 NGKE---VSGRLLYVGRAQK 268
Score = 83 (34.3 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 22/86 (25%), Positives = 42/86 (48%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
P ++ V L TE LY+ + GP+ +RV ++ + S G+A+I+F A
Sbjct: 9 PLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERA 68
Query: 345 MDRIGDDGLVVDGRKLFFEYSSKPTG 370
+D + + V+ G+ + +S + G
Sbjct: 69 LDTMNFE--VIKGQPIRIMWSQRDPG 92
Score = 78 (32.5 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 19/75 (25%), Positives = 40/75 (53%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
G + +K L + LY + +G + +V+ + + SRGF F+ F + AA+ +
Sbjct: 99 GNVFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHG--SRGFGFVHFETHEAAQNAIR 156
Query: 347 RIGDDGLVVDGRKLF 361
+ +G++++ RK+F
Sbjct: 157 TM--NGMLLNDRKVF 169
>UNIPROTKB|E2R8Z4 [details] [associations]
symbol:RBM6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000467 InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR015880 Pfam:PF01585 PROSITE:PS50102 PROSITE:PS50174
SMART:SM00355 SMART:SM00360 SMART:SM00443 GO:GO:0005634
GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00510000046476 CTD:10180 OMA:YDLDFRG
EMBL:AAEX03012225 EMBL:AAEX03012226 RefSeq:XP_850379.1
Ensembl:ENSCAFT00000017370 GeneID:608064 KEGG:cfa:608064
NextBio:20893742 Uniprot:E2R8Z4
Length = 1122
Score = 90 (36.7 bits), Expect = 3.7e-06, Sum P(5) = 3.7e-06
Identities = 21/57 (36%), Positives = 30/57 (52%)
Query: 567 KEYNPDDKQPTRGQEQRSDGDMVQKDGLALQSG-FVWDEASGYYYDAASGFYYDGNT 622
K+Y D + R + SD + G S +++D A+GYYYD +G YYD NT
Sbjct: 758 KKYFRDRRGGGRNSDWSSD---TNRQGQQSSSDCYIYDSATGYYYDPLAGTYYDPNT 811
Score = 83 (34.3 bits), Expect = 1.9e-05, Sum P(5) = 1.9e-05
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 608 YYYDAASGFYYDGNTGLYYDGNSG--IWYSYDQQTQQYIPCTDQNDNKTSGNGSEPSKQ 664
Y YD+A+G+YYD G YYD N+ ++ D + + + + K+S G SK+
Sbjct: 789 YIYDSATGYYYDPLAGTYYDPNTQQEVYVPQDPGSPEE---EEIKEKKSSSQGKSSSKK 844
Score = 80 (33.2 bits), Expect = 3.7e-06, Sum P(5) = 3.7e-06
Identities = 17/80 (21%), Positives = 40/80 (50%)
Query: 969 KAIDENNVGNRMLRSMGWHEGLGLGKDGSGMIEPVQAQAMDSRAGLGSQQKKVDPSLEVQ 1028
+ ID +N G + ++ GW +G GLG G+ + + +G+ + + + Q
Sbjct: 1046 EGIDSSNKGGCVQQTSGWRKGAGLGYGHPGLASAEETEGRMRGPSVGAPGR----TSKRQ 1101
Query: 1029 AGDSYKTLIHKKALARFREM 1048
+ ++Y+ + + AR++E+
Sbjct: 1102 SNETYRDAVRRVMFARYKEL 1121
Score = 74 (31.1 bits), Expect = 3.7e-06, Sum P(5) = 3.7e-06
Identities = 25/78 (32%), Positives = 38/78 (48%)
Query: 444 TGPTH-----VLVVRGLDEYAD-EEMLR-YEFSKHAPIKDLRLVRDKFTHVSRGFAFLHF 496
TGP V+ + G+ E A EE+L + P+KDL L ++ T G+ + F
Sbjct: 447 TGPNEEKASKVIRLSGVPENATKEEILNAFRTPDGMPVKDLEL-KEYNTGYDYGYVCVEF 505
Query: 497 HSVEDASKALEATNGTTL 514
+EDA +EA GT +
Sbjct: 506 SLLEDAIGCMEANQGTLM 523
Score = 74 (31.1 bits), Expect = 3.7e-06, Sum P(5) = 3.7e-06
Identities = 25/95 (26%), Positives = 45/95 (47%)
Query: 286 SGTIVVKGLSQKTTEEDLYQILAEWGPLR--HVRVIKERNSGVSRGFAFIDFPSVGAARA 343
S TI++K + + T E + ++L + L +VR+IK R + + FID S A
Sbjct: 654 SKTIMLKRIYRSTPPEVIVEVLEPYVRLTTANVRIIKNRTGPMGHTYGFIDLDSHAEALR 713
Query: 344 MMDRIG--DDGLVVDGRKLFFEYSS-KPTGGSGGH 375
++ + D +DG+ + ++ K SG H
Sbjct: 714 VVKILQNLDPPFSIDGKMVAVNLATGKRRNDSGDH 748
Score = 59 (25.8 bits), Expect = 5.8e-05, Sum P(6) = 5.8e-05
Identities = 18/85 (21%), Positives = 40/85 (47%)
Query: 286 SGTIVVKGLSQKTTEEDLYQILA--EWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARA 343
S I + G+ + T+E++ + P++ + +KE N+G G+ ++F + A
Sbjct: 455 SKVIRLSGVPENATKEEILNAFRTPDGMPVKDLE-LKEYNTGYDYGYVCVEFSLLEDAIG 513
Query: 344 MMDRIGDDGLVVDGRKLFFEYSSKP 368
M+ L++ +++ EY P
Sbjct: 514 CMEA-NQGTLMIHDKEVTLEYIPGP 537
Score = 47 (21.6 bits), Expect = 3.7e-06, Sum P(5) = 3.7e-06
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 60 NYPPPPVGLWPQSRRR-NYEEDYSLDRESRRHEKP 93
+YPPPP+ Q R N+ SL + + H P
Sbjct: 29 DYPPPPLKSHAQERHSGNFPGRDSLPFDFQGHSGP 63
Score = 43 (20.2 bits), Expect = 8.9e-06, Sum P(5) = 8.9e-06
Identities = 19/62 (30%), Positives = 30/62 (48%)
Query: 77 YEEDYSLD---RESRRHEK-PYIDSYHEMDA--YCGH-EIDSFPEFDKFRDGYRNIEN-- 127
++E+ SLD RE + Y D H + G+ + SFPE RD R++++
Sbjct: 385 FKEEGSLDFLGREDTDYRNMEYRDVDHRLPGSQIFGYGQSKSFPEGKTSRDAQRDLQDQD 444
Query: 128 YR 129
YR
Sbjct: 445 YR 446
Score = 40 (19.1 bits), Expect = 5.8e-05, Sum P(6) = 5.8e-05
Identities = 8/23 (34%), Positives = 9/23 (39%)
Query: 394 PCDWMCTICGCVNFARRTSCFQC 416
P W C C R+SC C
Sbjct: 537 PDFWYCKRCKASVAGHRSSCSLC 559
Score = 38 (18.4 bits), Expect = 3.7e-06, Sum P(5) = 3.7e-06
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 886 PLPPATQKEQ 895
PLPP +KE+
Sbjct: 880 PLPPTVKKEE 889
>TAIR|locus:2027438 [details] [associations]
symbol:GR-RBP6 "glycine-rich RNA-binding protein 6"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009651 "response to salt stress"
evidence=IEP] [GO:0005768 "endosome" evidence=IDA] [GO:0005794
"Golgi apparatus" evidence=IDA] [GO:0005802 "trans-Golgi network"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684 GO:GO:0005794
GO:GO:0000166 GO:GO:0005768 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005802 HSSP:P09651 EMBL:AC026238 EMBL:BT005999 EMBL:AK227482
EMBL:AY085358 IPI:IPI00537929 PIR:A86320 RefSeq:NP_173298.1
UniGene:At.356 UniGene:At.41785 ProteinModelPortal:Q9FZ84
SMR:Q9FZ84 IntAct:Q9FZ84 PaxDb:Q8LEL7 PRIDE:Q9FZ84
EnsemblPlants:AT1G18630.1 GeneID:838444 KEGG:ath:AT1G18630
GeneFarm:3974 TAIR:At1g18630 eggNOG:NOG255734 InParanoid:Q9FZ84
OMA:IFRQPRA PhylomeDB:Q9FZ84 ProtClustDB:CLSN2914186
Genevestigator:Q9FZ84 Uniprot:Q9FZ84
Length = 155
Score = 119 (46.9 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 32/102 (31%), Positives = 49/102 (48%)
Query: 282 AVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAA 341
++ PS I V GLS T E L + +G + V+ +R SG+SRGF F+ + S+ A
Sbjct: 32 SLTPS-KIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVA 90
Query: 342 RAMMDRIGDDGLVVDGRKLFFEYSSKPTGGSGGHYGQESAMG 383
M + + L DGR + + GG GG + + G
Sbjct: 91 NNAMQAMQNKEL--DGRIIGVHPADSGGGGGGGGFARRGGYG 130
Score = 109 (43.4 bits), Expect = 0.00031, P = 0.00031
Identities = 36/108 (33%), Positives = 56/108 (51%)
Query: 426 PAEMNSSNPIPLGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFT 485
P + +SN + G S T P+ + V GL D E+L+ F I D +V D+ +
Sbjct: 17 PRALQASNAMLQGNL-SLT-PSKIFV-GGLSPSTDVELLKEAFGSFGKIVDAVVVLDRES 73
Query: 486 HVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYAKSILGPG 533
+SRGF F+ + S+E A+ A++A L+ G+I+ V A S G G
Sbjct: 74 GLSRGFGFVTYDSIEVANNAMQAMQNKELD--GRIIGVHPADSGGGGG 119
>UNIPROTKB|D6RBZ0 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964992 ProteinModelPortal:D6RBZ0
SMR:D6RBZ0 Ensembl:ENST00000506339 ArrayExpress:D6RBZ0 Bgee:D6RBZ0
Uniprot:D6RBZ0
Length = 327
Score = 98 (39.6 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 24/76 (31%), Positives = 41/76 (53%)
Query: 286 SGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMM 345
+G + V GLS T+++DL ++G + + + N+G SRGF FI F + ++
Sbjct: 69 AGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL 128
Query: 346 DRIGD--DGLVVDGRK 359
D+ DG V+D +K
Sbjct: 129 DQKEHRLDGRVIDPKK 144
Score = 88 (36.0 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 26/84 (30%), Positives = 37/84 (44%)
Query: 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKA 505
P + V GL+ A EE +R F + I+ + L D + RGF F+ F E K
Sbjct: 152 PVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKV 211
Query: 506 LEATNGTTLEKNGQILRVAYAKSI 529
LE T +I +VA K +
Sbjct: 212 LEKKFHTVSGSKCEI-KVAQPKEV 234
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 102 (41.0 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 30/91 (32%), Positives = 50/91 (54%)
Query: 437 LGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHF 496
LG K + T+V + + E D+E LR FS+ ++++RD + S+GF F+ +
Sbjct: 183 LGAKAKEF--TNVYI-KNFGEEVDDENLRELFSQFGKTLSVKVMRD-CSGKSKGFGFVSY 238
Query: 497 HSVEDASKALEATNGTTLEKNGQILRVAYAK 527
EDA+KA+E NG E +G+ + V A+
Sbjct: 239 EKHEDANKAVEEMNGK--EMSGKSIFVGRAQ 267
Score = 98 (39.6 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 23/62 (37%), Positives = 36/62 (58%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
L ++ LD+ D+E LR EFS I +++ + S+GF F+ F S E+A+KA+
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEM 353
Query: 510 NG 511
NG
Sbjct: 354 NG 355
Score = 97 (39.2 bits), Expect = 6.8e-05, Sum P(2) = 6.8e-05
Identities = 23/63 (36%), Positives = 37/63 (58%)
Query: 452 VRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNG 511
++ LD+ D + L FS I ++V D+ + S+G+AF+HF + E A+KA+E NG
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAANKAIEKMNG 160
Query: 512 TTL 514
L
Sbjct: 161 MLL 163
Score = 92 (37.4 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 19/75 (25%), Positives = 43/75 (57%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
G + +K L + + LY + +G + +V+ + N S+G+AF+ F + AA ++
Sbjct: 99 GNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAANKAIE 156
Query: 347 RIGDDGLVVDGRKLF 361
++ +G++++ RK+F
Sbjct: 157 KM--NGMLLNDRKVF 169
Score = 85 (35.0 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 21/83 (25%), Positives = 41/83 (49%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
P ++ V L TE LY+ + GP+ +RV ++ + S G+A+++F A
Sbjct: 9 PMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERA 68
Query: 345 MDRIGDDGLVVDGRKLFFEYSSK 367
+D + D V+ G+ + +S +
Sbjct: 69 LDTMNFD--VIKGKPIRIMWSQR 89
Score = 80 (33.2 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 17/79 (21%), Positives = 43/79 (54%)
Query: 289 IVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRI 348
+ +K ++ +E+L ++ +++G V+V+++ SG S+GF F+ + A ++ +
Sbjct: 193 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 349 GDDGLVVDGRKLFFEYSSK 367
+G + G+ +F + K
Sbjct: 252 --NGKEMSGKSIFVGRAQK 268
>UNIPROTKB|Q9XSY6 [details] [associations]
symbol:Q9XSY6 "HnRNP A/B related protein" species:9685
"Felis catus" [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0001837 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 EMBL:AF153444 ProteinModelPortal:Q9XSY6 Uniprot:Q9XSY6
Length = 279
Score = 93 (37.8 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 27/84 (32%), Positives = 38/84 (45%)
Query: 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKA 505
P + V GL+ A EE +R F + I+ + L D T+ RGF F+ F E K
Sbjct: 146 PVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEEPVKKV 205
Query: 506 LEATNGTTLEKNGQILRVAYAKSI 529
LE T +I +VA K +
Sbjct: 206 LEKKFHTISGSKCEI-KVAQPKEV 228
Score = 91 (37.1 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 23/76 (30%), Positives = 40/76 (52%)
Query: 286 SGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMM 345
+G + V GLS T+++DL ++G + + N+G S+GF FI F + ++
Sbjct: 63 AGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMVPNTGRSKGFGFILFKDAASVEKVL 122
Query: 346 DRIGD--DGLVVDGRK 359
D+ DG V+D +K
Sbjct: 123 DQKEHRLDGRVIDPKK 138
>UNIPROTKB|H0YBQ4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519596
Uniprot:H0YBQ4
Length = 258
Score = 98 (39.6 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
Identities = 24/62 (38%), Positives = 36/62 (58%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
L V+ LD+ D+E LR EFS I +++ + S+GF F+ F S E+A+KA+
Sbjct: 129 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEM 186
Query: 510 NG 511
NG
Sbjct: 187 NG 188
Score = 84 (34.6 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
Identities = 19/79 (24%), Positives = 42/79 (53%)
Query: 289 IVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRI 348
+ +K + +E L + ++GP V+V+ + SG S+GF F+ F A+ +D +
Sbjct: 26 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 84
Query: 349 GDDGLVVDGRKLFFEYSSK 367
+G ++G++++ + K
Sbjct: 85 --NGKELNGKQIYVGRAQK 101
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 103 (41.3 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 29/91 (31%), Positives = 51/91 (56%)
Query: 437 LGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHF 496
LG K + T+V + + E D+E L+ FS+ ++++RD + S+GF F+ +
Sbjct: 183 LGAKAKEF--TNVYI-KNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSY 238
Query: 497 HSVEDASKALEATNGTTLEKNGQILRVAYAK 527
EDA+KA+E NG E +G+++ V A+
Sbjct: 239 EKHEDANKAVEEMNGK--EISGKVIFVGRAQ 267
Score = 98 (39.6 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 23/62 (37%), Positives = 36/62 (58%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
L ++ LD+ D+E LR EFS I +++ + S+GF F+ F S E+A+KA+
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEM 353
Query: 510 NG 511
NG
Sbjct: 354 NG 355
Score = 96 (38.9 bits), Expect = 7.7e-05, Sum P(2) = 7.7e-05
Identities = 23/63 (36%), Positives = 36/63 (57%)
Query: 452 VRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNG 511
++ LD+ D + L FS I ++V D+ + S+G+AF+HF + E A KA+E NG
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 512 TTL 514
L
Sbjct: 161 MLL 163
Score = 90 (36.7 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 19/75 (25%), Positives = 43/75 (57%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
G + +K L + + LY + +G + +V+ + N S+G+AF+ F + AA ++
Sbjct: 99 GNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIE 156
Query: 347 RIGDDGLVVDGRKLF 361
++ +G++++ RK+F
Sbjct: 157 KM--NGMLLNDRKVF 169
Score = 85 (35.0 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 21/83 (25%), Positives = 41/83 (49%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
P ++ V L TE LY+ + GP+ +RV ++ + S G+A+++F A
Sbjct: 9 PMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERA 68
Query: 345 MDRIGDDGLVVDGRKLFFEYSSK 367
+D + D V+ G+ + +S +
Sbjct: 69 LDTMNFD--VIKGKPIRIMWSQR 89
Score = 81 (33.6 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 17/79 (21%), Positives = 43/79 (54%)
Query: 289 IVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRI 348
+ +K ++ +E+L ++ +++G V+V+++ SG S+GF F+ + A ++ +
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 349 GDDGLVVDGRKLFFEYSSK 367
+G + G+ +F + K
Sbjct: 252 --NGKEISGKVIFVGRAQK 268
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 104 (41.7 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 29/91 (31%), Positives = 51/91 (56%)
Query: 437 LGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHF 496
LG K + T+V + + E D+E L+ FS+ ++++RD + S+GF F+ +
Sbjct: 223 LGAKAKEF--TNVYI-KNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSY 278
Query: 497 HSVEDASKALEATNGTTLEKNGQILRVAYAK 527
EDA+KA+E NG E +G+++ V A+
Sbjct: 279 EKHEDANKAVEEMNGK--EISGKVIFVGRAQ 307
Score = 98 (39.6 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 23/62 (37%), Positives = 36/62 (58%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
L ++ LD+ D+E LR EFS I +++ + S+GF F+ F S E+A+KA+
Sbjct: 336 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEM 393
Query: 510 NG 511
NG
Sbjct: 394 NG 395
Score = 90 (36.7 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 19/75 (25%), Positives = 43/75 (57%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
G + +K L + + LY + +G + +V+ + N S+G+AF+ F + AA ++
Sbjct: 139 GNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIE 196
Query: 347 RIGDDGLVVDGRKLF 361
++ +G++++ RK+F
Sbjct: 197 KM--NGMLLNDRKVF 209
Score = 80 (33.2 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 17/79 (21%), Positives = 42/79 (53%)
Query: 289 IVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRI 348
+ +K ++ +E L ++ +++G V+V+++ SG S+GF F+ + A ++ +
Sbjct: 233 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 291
Query: 349 GDDGLVVDGRKLFFEYSSK 367
+G + G+ +F + K
Sbjct: 292 --NGKEISGKVIFVGRAQK 308
>MGI|MGI:1915019 [details] [associations]
symbol:Gpatch2 "G patch domain containing 2" species:10090
"Mus musculus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0010923 "negative regulation
of phosphatase activity" evidence=ISO] InterPro:IPR000467
Pfam:PF01585 PROSITE:PS50174 SMART:SM00443 MGI:MGI:1915019
GO:GO:0003676 GO:GO:0010923 GeneTree:ENSGT00410000025698
HOGENOM:HOG000294060 InterPro:IPR026291 PANTHER:PTHR14195 CTD:55105
eggNOG:NOG300034 HOVERGEN:HBG062801 OMA:VPWWEKE EMBL:AK030026
EMBL:AK053781 EMBL:AK083471 EMBL:BC054810 IPI:IPI00416341
IPI:IPI00416342 IPI:IPI00416343 RefSeq:NP_080643.4
UniGene:Mm.138321 UniGene:Mm.490325 ProteinModelPortal:Q7TQC7
PhosphoSite:Q7TQC7 PRIDE:Q7TQC7 Ensembl:ENSMUST00000065573
Ensembl:ENSMUST00000110943 Ensembl:ENSMUST00000160471 GeneID:67769
KEGG:mmu:67769 UCSC:uc007dzx.2 UCSC:uc007dzy.2 InParanoid:Q7TQC7
NextBio:325513 Bgee:Q7TQC7 CleanEx:MM_GPATCH2 Genevestigator:Q7TQC7
GermOnline:ENSMUSG00000039210 Uniprot:Q7TQC7
Length = 527
Score = 142 (55.0 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 28/52 (53%), Positives = 34/52 (65%)
Query: 973 ENNVGNRMLRSMGWHEGLGLGKDGSGMIEPVQAQAMDSRAGLGSQQKKVDPS 1024
E+N+GNRML+SMGW G GLG+DG G+ EPVQA GLG K P+
Sbjct: 466 ESNIGNRMLQSMGWTPGSGLGRDGRGIAEPVQAVQRPKGLGLGFPLPKSSPT 517
>UNIPROTKB|Q2HJ60 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0097157 "pre-mRNA
intronic binding" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0043047 "single-stranded
telomeric DNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0030529 GO:GO:0097157 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442
OrthoDB:EOG4HQDKF EMBL:BC113298 IPI:IPI00695201
RefSeq:NP_001039440.1 UniGene:Bt.48137 ProteinModelPortal:Q2HJ60
SMR:Q2HJ60 STRING:Q2HJ60 PRIDE:Q2HJ60 Ensembl:ENSBTAT00000007527
GeneID:507564 KEGG:bta:507564 CTD:3181 GeneTree:ENSGT00700000104376
KO:K13158 OMA:HYSARTS NextBio:20868121 Uniprot:Q2HJ60
Length = 341
Score = 106 (42.4 bits), Expect = 4.5e-06, Sum P(3) = 4.5e-06
Identities = 31/83 (37%), Positives = 43/83 (51%)
Query: 289 IVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAA-RAMMDR 347
+ + GLS +TTEE L +WG L V+++ S SRGF F+ F S+ AM R
Sbjct: 11 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 70
Query: 348 IGD-DGLVVDGRKLFF-EYSSKP 368
DG VV+ ++ E S KP
Sbjct: 71 PHSIDGRVVEPKRAVAREESGKP 93
Score = 74 (31.1 bits), Expect = 4.5e-06, Sum P(3) = 4.5e-06
Identities = 19/67 (28%), Positives = 31/67 (46%)
Query: 438 GKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFH 497
GK G+ L V G+ E +E LR F ++ I + ++ D+ + RGF F+ F
Sbjct: 91 GKPGAHV-TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFD 149
Query: 498 SVEDASK 504
+ K
Sbjct: 150 DHDPVDK 156
Score = 45 (20.9 bits), Expect = 4.5e-06, Sum P(3) = 4.5e-06
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 615 GFYYDGNTGLYYDGNSGIWYSYDQQTQQYIPCTDQN 650
G Y + G Y GN + +Y+QQ Y P N
Sbjct: 273 GGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGN 308
>UNIPROTKB|B7ZMD9 [details] [associations]
symbol:RBMY1D "RNA-binding motif protein, Y chromosome,
family 1 member D" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG063314
InterPro:IPR012604 Pfam:PF08081 UniGene:Hs.380450 EMBL:AC007322
HGNC:HGNC:23915 EMBL:BC136862 EMBL:BC144459 IPI:IPI00945061
SMR:B7ZMD9 Ensembl:ENST00000418956 UCSC:uc010nxb.2 Uniprot:B7ZMD9
Length = 459
Score = 141 (54.7 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 31/78 (39%), Positives = 49/78 (62%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
L + GL+ +E+ML+ F KH PI ++ L++D+ T SRGFAF+ F + DA A +
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDM 68
Query: 510 NGTTLEKNGQILRVAYAK 527
NG +L +G+ ++V AK
Sbjct: 69 NGKSL--HGKAIKVEQAK 84
>UNIPROTKB|J3KPK3 [details] [associations]
symbol:RBMY1E "RNA-binding motif protein, Y chromosome,
family 1 member E" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012604 Pfam:PF08081
EMBL:AC007322 HGNC:HGNC:23916 ProteinModelPortal:J3KPK3
Ensembl:ENST00000382658 Uniprot:J3KPK3
Length = 459
Score = 141 (54.7 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 31/78 (39%), Positives = 49/78 (62%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
L + GL+ +E+ML+ F KH PI ++ L++D+ T SRGFAF+ F + DA A +
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDM 68
Query: 510 NGTTLEKNGQILRVAYAK 527
NG +L +G+ ++V AK
Sbjct: 69 NGKSL--HGKAIKVEQAK 84
>MGI|MGI:1923417 [details] [associations]
symbol:Snrnp35 "small nuclear ribonucleoprotein 35
(U11/U12)" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0005689 "U12-type spliceosomal complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0008380 "RNA splicing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1923417 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 GO:GO:0005689 HSSP:Q14103
GeneTree:ENSGT00530000063750 CTD:11066 HOGENOM:HOG000006374
HOVERGEN:HBG104583 KO:K13155 OMA:QHEVFVD OrthoDB:EOG4MSD0C
ChiTaRS:SNRNP35 EMBL:AK018232 EMBL:AK039064 EMBL:BC043031
EMBL:BC058361 IPI:IPI00135531 RefSeq:NP_083808.1 UniGene:Mm.156035
ProteinModelPortal:Q9D384 SMR:Q9D384 STRING:Q9D384
PhosphoSite:Q9D384 PRIDE:Q9D384 Ensembl:ENSMUST00000031349
Ensembl:ENSMUST00000111453 GeneID:76167 KEGG:mmu:76167
UCSC:uc008zpy.1 InParanoid:Q9D384 NextBio:344705 Bgee:Q9D384
Genevestigator:Q9D384 Uniprot:Q9D384
Length = 244
Score = 135 (52.6 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 29/86 (33%), Positives = 53/86 (61%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
P T+ V L+ +T EE L ++ + +G +R +R++++ +G S+G+AFI++ RA+
Sbjct: 49 PLLTLFVARLNLQTKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKE---ERAL 105
Query: 345 MDRIGD-DGLVVDGRKLFFEYSSKPT 369
M D DGLV+D ++F +Y + T
Sbjct: 106 MKAYRDADGLVIDQHEIFVDYELERT 131
>RGD|1310071 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10116
"Rattus norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0005813
"centrosome" evidence=ISO] [GO:0015630 "microtubule cytoskeleton"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310071
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH474050 eggNOG:COG0724
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584 HOGENOM:HOG000236253
KO:K13091 OrthoDB:EOG4RJG1P IPI:IPI00555302 GeneID:100910882
KEGG:rno:100910882 EMBL:BC091394 RefSeq:NP_001013225.1
RefSeq:XP_003749654.1 UniGene:Rn.8555 SMR:Q5BJP4 STRING:Q5BJP4
GeneID:362251 KEGG:rno:362251 UCSC:RGD:1310071 InParanoid:Q5BJP4
NextBio:679201 Genevestigator:Q5BJP4 Uniprot:Q5BJP4
Length = 524
Score = 106 (42.4 bits), Expect = 4.6e-06, Sum P(3) = 4.6e-06
Identities = 36/103 (34%), Positives = 51/103 (49%)
Query: 424 APPAEMNSSNPIPLG-KKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRD 482
A AE N + + +KGS GP L V L E+MLR F I+ ++L+ D
Sbjct: 227 ASQAEKNRAAAMANNLQKGS-AGPMR-LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMD 284
Query: 483 KFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525
T S+G+ F+ F E A KALE NG E G+ ++V +
Sbjct: 285 SETGRSKGYGFITFSDSECAKKALEQLNG--FELAGRPMKVGH 325
Score = 82 (33.9 bits), Expect = 4.6e-06, Sum P(3) = 4.6e-06
Identities = 17/53 (32%), Positives = 30/53 (56%)
Query: 288 TIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGA 340
T+ L+ + DL + + G +R VR+I +RNS S+G A+++F V +
Sbjct: 154 TVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSS 206
Score = 45 (20.9 bits), Expect = 4.6e-06, Sum P(3) = 4.6e-06
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 197 SRDRERDKRCLSRERE 212
SRDRER K+ SRER+
Sbjct: 58 SRDRER-KKSKSRERK 72
>UNIPROTKB|F6QIA5 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:DAAA02036526 IPI:IPI01017797
Ensembl:ENSBTAT00000002491 Uniprot:F6QIA5
Length = 525
Score = 106 (42.4 bits), Expect = 4.6e-06, Sum P(3) = 4.6e-06
Identities = 36/103 (34%), Positives = 51/103 (49%)
Query: 424 APPAEMNSSNPIPLG-KKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRD 482
A AE N + + +KGS GP L V L E+MLR F I+ ++L+ D
Sbjct: 227 ASQAEKNRAAAMANNLQKGS-AGPMR-LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMD 284
Query: 483 KFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525
T S+G+ F+ F E A KALE NG E G+ ++V +
Sbjct: 285 SETGRSKGYGFITFSDSECAKKALEQLNG--FELAGRPMKVGH 325
Score = 82 (33.9 bits), Expect = 4.6e-06, Sum P(3) = 4.6e-06
Identities = 17/53 (32%), Positives = 30/53 (56%)
Query: 288 TIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGA 340
T+ L+ + DL + + G +R VR+I +RNS S+G A+++F V +
Sbjct: 154 TVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSS 206
Score = 45 (20.9 bits), Expect = 4.6e-06, Sum P(3) = 4.6e-06
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 197 SRDRERDKRCLSRERE 212
SRDRER K+ SRER+
Sbjct: 58 SRDRER-KKSKSRERK 72
>UNIPROTKB|F2Z5I2 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:CU210870
Ensembl:ENSSSCT00000007997 ArrayExpress:F2Z5I2 Uniprot:F2Z5I2
Length = 525
Score = 106 (42.4 bits), Expect = 4.6e-06, Sum P(3) = 4.6e-06
Identities = 36/103 (34%), Positives = 51/103 (49%)
Query: 424 APPAEMNSSNPIPLG-KKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRD 482
A AE N + + +KGS GP L V L E+MLR F I+ ++L+ D
Sbjct: 227 ASQAEKNRAAAMANNLQKGS-AGPMR-LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMD 284
Query: 483 KFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525
T S+G+ F+ F E A KALE NG E G+ ++V +
Sbjct: 285 SETGRSKGYGFITFSDSECAKKALEQLNG--FELAGRPMKVGH 325
Score = 82 (33.9 bits), Expect = 4.6e-06, Sum P(3) = 4.6e-06
Identities = 17/53 (32%), Positives = 30/53 (56%)
Query: 288 TIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGA 340
T+ L+ + DL + + G +R VR+I +RNS S+G A+++F V +
Sbjct: 154 TVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSS 206
Score = 45 (20.9 bits), Expect = 4.6e-06, Sum P(3) = 4.6e-06
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 197 SRDRERDKRCLSRERE 212
SRDRER K+ SRER+
Sbjct: 58 SRDRER-KKSKSRERK 72
>UNIPROTKB|E1BRU3 [details] [associations]
symbol:LOC100858247 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AADN02019511
IPI:IPI00601860 Ensembl:ENSGALT00000002354 Uniprot:E1BRU3
Length = 529
Score = 106 (42.4 bits), Expect = 4.8e-06, Sum P(3) = 4.8e-06
Identities = 36/103 (34%), Positives = 51/103 (49%)
Query: 424 APPAEMNSSNPIPLG-KKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRD 482
A AE N + + +KGS GP L V L E+MLR F I+ ++L+ D
Sbjct: 227 ASQAEKNRAAAMANNLQKGS-AGPMR-LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMD 284
Query: 483 KFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525
T S+G+ F+ F E A KALE NG E G+ ++V +
Sbjct: 285 SETGRSKGYGFITFSDSECAKKALEQLNG--FELAGRPMKVGH 325
Score = 82 (33.9 bits), Expect = 4.8e-06, Sum P(3) = 4.8e-06
Identities = 17/53 (32%), Positives = 30/53 (56%)
Query: 288 TIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGA 340
T+ L+ + DL + + G +R VR+I +RNS S+G A+++F V +
Sbjct: 154 TVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSS 206
Score = 45 (20.9 bits), Expect = 4.8e-06, Sum P(3) = 4.8e-06
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 197 SRDRERDKRCLSRERE 212
SRDRER K+ SRER+
Sbjct: 58 SRDRER-KKSRSRERK 72
>UNIPROTKB|E2R4L0 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005813 "centrosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
CTD:9584 KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089
EMBL:AAEX03013911 RefSeq:XP_864959.2 ProteinModelPortal:E2R4L0
SMR:E2R4L0 PRIDE:E2R4L0 Ensembl:ENSCAFT00000013241 GeneID:477216
KEGG:cfa:477216 NextBio:20852735 Uniprot:E2R4L0
Length = 530
Score = 106 (42.4 bits), Expect = 4.8e-06, Sum P(3) = 4.8e-06
Identities = 36/103 (34%), Positives = 51/103 (49%)
Query: 424 APPAEMNSSNPIPLG-KKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRD 482
A AE N + + +KGS GP L V L E+MLR F I+ ++L+ D
Sbjct: 227 ASQAEKNRAAAMANNLQKGS-AGPMR-LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMD 284
Query: 483 KFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525
T S+G+ F+ F E A KALE NG E G+ ++V +
Sbjct: 285 SETGRSKGYGFITFSDSECAKKALEQLNG--FELAGRPMKVGH 325
Score = 82 (33.9 bits), Expect = 4.8e-06, Sum P(3) = 4.8e-06
Identities = 17/53 (32%), Positives = 30/53 (56%)
Query: 288 TIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGA 340
T+ L+ + DL + + G +R VR+I +RNS S+G A+++F V +
Sbjct: 154 TVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSS 206
Score = 45 (20.9 bits), Expect = 4.8e-06, Sum P(3) = 4.8e-06
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 197 SRDRERDKRCLSRERE 212
SRDRER K+ SRER+
Sbjct: 58 SRDRER-KKSKSRERK 72
>UNIPROTKB|Q14498 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006396 "RNA processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005813
"centrosome" evidence=IDA] [GO:0015630 "microtubule cytoskeleton"
evidence=IDA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005813 EMBL:CH471077 GO:GO:0005654 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
eggNOG:COG0724 EMBL:AL357374 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
EMBL:L10910 EMBL:L10911 EMBL:AK299678 EMBL:BC131543 EMBL:BC141835
EMBL:BC158172 IPI:IPI00163505 IPI:IPI00215801 IPI:IPI00514831
PIR:I55595 RefSeq:NP_001229528.1 RefSeq:NP_001229529.1
RefSeq:NP_004893.1 RefSeq:NP_909122.1 UniGene:Hs.282901 PDB:2JRS
PDBsum:2JRS ProteinModelPortal:Q14498 SMR:Q14498 IntAct:Q14498
MINT:MINT-5004569 STRING:Q14498 PhosphoSite:Q14498 DMDM:28201880
PaxDb:Q14498 PRIDE:Q14498 Ensembl:ENST00000253363
Ensembl:ENST00000361162 Ensembl:ENST00000528062 GeneID:9584
KEGG:hsa:9584 UCSC:uc002xeb.3 UCSC:uc002xec.3 CTD:9584
GeneCards:GC20M034291 HGNC:HGNC:15923 HPA:HPA001591 MIM:604739
neXtProt:NX_Q14498 PharmGKB:PA34450 HOGENOM:HOG000236253
InParanoid:Q14498 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
PhylomeDB:Q14498 ChiTaRS:RBM39 EvolutionaryTrace:Q14498
GenomeRNAi:9584 NextBio:35953 ArrayExpress:Q14498 Bgee:Q14498
CleanEx:HS_RBM39 Genevestigator:Q14498 GermOnline:ENSG00000131051
Uniprot:Q14498
Length = 530
Score = 106 (42.4 bits), Expect = 4.8e-06, Sum P(3) = 4.8e-06
Identities = 36/103 (34%), Positives = 51/103 (49%)
Query: 424 APPAEMNSSNPIPLG-KKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRD 482
A AE N + + +KGS GP L V L E+MLR F I+ ++L+ D
Sbjct: 227 ASQAEKNRAAAMANNLQKGS-AGPMR-LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMD 284
Query: 483 KFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525
T S+G+ F+ F E A KALE NG E G+ ++V +
Sbjct: 285 SETGRSKGYGFITFSDSECAKKALEQLNG--FELAGRPMKVGH 325
Score = 82 (33.9 bits), Expect = 4.8e-06, Sum P(3) = 4.8e-06
Identities = 17/53 (32%), Positives = 30/53 (56%)
Query: 288 TIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGA 340
T+ L+ + DL + + G +R VR+I +RNS S+G A+++F V +
Sbjct: 154 TVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSS 206
Score = 45 (20.9 bits), Expect = 4.8e-06, Sum P(3) = 4.8e-06
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 197 SRDRERDKRCLSRERE 212
SRDRER K+ SRER+
Sbjct: 58 SRDRER-KKSKSRERK 72
>MGI|MGI:2157953 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=TAS] [GO:0006351 "transcription,
DNA-dependent" evidence=TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2157953
GO:GO:0005634 GO:GO:0005813 GO:GO:0006355 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
EMBL:CH466551 GO:GO:0003723 GO:GO:0003713 eggNOG:COG0724
EMBL:AL929404 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584
HOGENOM:HOG000236253 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
ChiTaRS:RBM39 EMBL:AY061882 EMBL:AK147076 EMBL:BX649640
EMBL:BC004000 EMBL:BC030493 EMBL:BC086645 IPI:IPI00127763
IPI:IPI00223371 IPI:IPI00223372 RefSeq:NP_573505.2
UniGene:Mm.392436 UniGene:Mm.436932 PDB:2LQ5 PDB:3S6E PDBsum:2LQ5
PDBsum:3S6E ProteinModelPortal:Q8VH51 SMR:Q8VH51 IntAct:Q8VH51
STRING:Q8VH51 PhosphoSite:Q8VH51 PaxDb:Q8VH51 PRIDE:Q8VH51
Ensembl:ENSMUST00000029149 Ensembl:ENSMUST00000109587
Ensembl:ENSMUST00000146297 GeneID:170791 KEGG:mmu:170791
GeneTree:ENSGT00690000102089 InParanoid:Q5RJI0
EvolutionaryTrace:Q8VH51 NextBio:370435 Bgee:Q8VH51
CleanEx:MM_RBM39 Genevestigator:Q8VH51
GermOnline:ENSMUSG00000027620 Uniprot:Q8VH51
Length = 530
Score = 106 (42.4 bits), Expect = 4.8e-06, Sum P(3) = 4.8e-06
Identities = 36/103 (34%), Positives = 51/103 (49%)
Query: 424 APPAEMNSSNPIPLG-KKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRD 482
A AE N + + +KGS GP L V L E+MLR F I+ ++L+ D
Sbjct: 227 ASQAEKNRAAAMANNLQKGS-AGPMR-LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMD 284
Query: 483 KFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525
T S+G+ F+ F E A KALE NG E G+ ++V +
Sbjct: 285 SETGRSKGYGFITFSDSECAKKALEQLNG--FELAGRPMKVGH 325
Score = 82 (33.9 bits), Expect = 4.8e-06, Sum P(3) = 4.8e-06
Identities = 17/53 (32%), Positives = 30/53 (56%)
Query: 288 TIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGA 340
T+ L+ + DL + + G +R VR+I +RNS S+G A+++F V +
Sbjct: 154 TVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSS 206
Score = 45 (20.9 bits), Expect = 4.8e-06, Sum P(3) = 4.8e-06
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 197 SRDRERDKRCLSRERE 212
SRDRER K+ SRER+
Sbjct: 58 SRDRER-KKSKSRERK 72
>UNIPROTKB|F1MA64 [details] [associations]
symbol:Rbm39 "Protein Rbm39" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310071 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AC118414
IPI:IPI00555302 RefSeq:XP_003749653.1 ProteinModelPortal:F1MA64
SMR:F1MA64 PRIDE:F1MA64 Ensembl:ENSRNOT00000026964 GeneID:100910882
KEGG:rno:100910882 ArrayExpress:F1MA64 Uniprot:F1MA64
Length = 530
Score = 106 (42.4 bits), Expect = 4.8e-06, Sum P(3) = 4.8e-06
Identities = 36/103 (34%), Positives = 51/103 (49%)
Query: 424 APPAEMNSSNPIPLG-KKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRD 482
A AE N + + +KGS GP L V L E+MLR F I+ ++L+ D
Sbjct: 227 ASQAEKNRAAAMANNLQKGS-AGPMR-LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMD 284
Query: 483 KFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525
T S+G+ F+ F E A KALE NG E G+ ++V +
Sbjct: 285 SETGRSKGYGFITFSDSECAKKALEQLNG--FELAGRPMKVGH 325
Score = 82 (33.9 bits), Expect = 4.8e-06, Sum P(3) = 4.8e-06
Identities = 17/53 (32%), Positives = 30/53 (56%)
Query: 288 TIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGA 340
T+ L+ + DL + + G +R VR+I +RNS S+G A+++F V +
Sbjct: 154 TVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSS 206
Score = 45 (20.9 bits), Expect = 4.8e-06, Sum P(3) = 4.8e-06
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 197 SRDRERDKRCLSRERE 212
SRDRER K+ SRER+
Sbjct: 58 SRDRER-KKSKSRERK 72
>UNIPROTKB|K7ELT6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000590347 Ensembl:ENST00000591055
Uniprot:K7ELT6
Length = 135
Score = 118 (46.6 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 28/70 (40%), Positives = 41/70 (58%)
Query: 442 SDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVED 501
SD G L V GL +E+ L FSK+ I ++ +V+D+ T SRGF F+ F +++D
Sbjct: 3 SDEGK---LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 502 ASKALEATNG 511
A A+ A NG
Sbjct: 60 AKDAMMAMNG 69
Score = 112 (44.5 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 24/60 (40%), Positives = 38/60 (63%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAAR-AMM 345
G + V GLS T E+ L Q+ +++G + V V+K+R + SRGF F+ F ++ A+ AMM
Sbjct: 6 GKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMM 65
>UNIPROTKB|K7ELV6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588344 Uniprot:K7ELV6
Length = 70
Score = 118 (46.6 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 28/70 (40%), Positives = 41/70 (58%)
Query: 442 SDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVED 501
SD G L V GL +E+ L FSK+ I ++ +V+D+ T SRGF F+ F +++D
Sbjct: 3 SDEGK---LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 502 ASKALEATNG 511
A A+ A NG
Sbjct: 60 AKDAMMAMNG 69
Score = 112 (44.5 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 24/60 (40%), Positives = 38/60 (63%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAAR-AMM 345
G + V GLS T E+ L Q+ +++G + V V+K+R + SRGF F+ F ++ A+ AMM
Sbjct: 6 GKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMM 65
>UNIPROTKB|I3LQ36 [details] [associations]
symbol:I3LQ36 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:CU210877
Ensembl:ENSSSCT00000005974 Uniprot:I3LQ36
Length = 161
Score = 118 (46.6 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 33/83 (39%), Positives = 48/83 (57%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
L V GL+ E+ L FS PI ++ +V+D T S+GF F+ F + E AS A+ AT
Sbjct: 8 LFVGGLNFNTYEQALEDHFSSFGPIFEVVVVKDWETRRSQGFGFITFTNPEHASNAMRAT 67
Query: 510 NGTTLEKNGQILRVAYA-KSILG 531
NG +L+ G+ + V +A KS G
Sbjct: 68 NGESLD--GRQIHVDHAGKSARG 88
Score = 109 (43.4 bits), Expect = 0.00058, P = 0.00058
Identities = 33/111 (29%), Positives = 58/111 (52%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVG-AARAMM 345
G + V GL+ T E+ L + +GP+ V V+K+ + S+GF FI F + A+ AM
Sbjct: 6 GKLFVGGLNFNTYEQALEDHFSSFGPIFEVVVVKDWETRRSQGFGFITFTNPEHASNAMR 65
Query: 346 DRIGDDGLVVDGRKLFFEYSSKPTGGS-GGHY---GQESAMGARHSNHKST 392
G+ +DGR++ +++ K G+ GG + G + G H ++ S+
Sbjct: 66 ATNGES---LDGRQIHVDHAGKSARGTRGGAFEAHGHGYSRGRGHQSYGSS 113
>UNIPROTKB|Q5ZME1 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0043047 "single-stranded telomeric DNA binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0097157 GO:GO:0048025 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF CTD:3181
GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS EMBL:AC140791
EMBL:AJ719443 IPI:IPI00651336 RefSeq:NP_001026156.1
UniGene:Gga.22131 SMR:Q5ZME1 IntAct:Q5ZME1 STRING:Q5ZME1
Ensembl:ENSGALT00000017975 GeneID:420627 KEGG:gga:420627
InParanoid:Q5ZME1 NextBio:20823513 Uniprot:Q5ZME1
Length = 349
Score = 106 (42.4 bits), Expect = 5.1e-06, Sum P(3) = 5.1e-06
Identities = 31/83 (37%), Positives = 41/83 (49%)
Query: 289 IVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPS---VGAARAMM 345
+ + GLS +TTEE L +WG L V+++ S SRGF F+ F S V AA A
Sbjct: 19 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 78
Query: 346 DRIGDDGLVVDGRKLFFEYSSKP 368
D +V R + E S KP
Sbjct: 79 PHTIDGRVVEPKRAVAREESGKP 101
Score = 74 (31.1 bits), Expect = 5.1e-06, Sum P(3) = 5.1e-06
Identities = 19/67 (28%), Positives = 31/67 (46%)
Query: 438 GKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFH 497
GK G+ L V G+ E +E LR F ++ I + ++ D+ + RGF F+ F
Sbjct: 99 GKPGAHV-TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFD 157
Query: 498 SVEDASK 504
+ K
Sbjct: 158 DHDPVDK 164
Score = 45 (20.9 bits), Expect = 5.1e-06, Sum P(3) = 5.1e-06
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 615 GFYYDGNTGLYYDGNSGIWYSYDQQTQQYIPCTDQN 650
G Y + G Y GN + +Y+QQ Y P N
Sbjct: 281 GGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGN 316
>UNIPROTKB|A6NDE4 [details] [associations]
symbol:RBMY1B "RNA-binding motif protein, Y chromosome,
family 1 member B" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008380 "RNA splicing" evidence=IDA] [GO:0007283
"spermatogenesis" evidence=TAS] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0008584 "male gonad development" evidence=IMP]
[GO:0005634 "nucleus" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0008584
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 EMBL:AC010141 UniGene:Hs.380450 HPA:HPA001534
IPI:IPI00479500 RefSeq:NP_001006121.1 UniGene:Hs.725744
ProteinModelPortal:A6NDE4 SMR:A6NDE4 STRING:A6NDE4 PaxDb:A6NDE4
PRIDE:A6NDE4 Ensembl:ENST00000383020 GeneID:378948 KEGG:hsa:378948
UCSC:uc004fup.4 CTD:378948 GeneCards:GC0YP023674 HGNC:HGNC:23914
neXtProt:NX_A6NDE4 PharmGKB:PA134872137 eggNOG:NOG140744
InParanoid:A6NDE4 OMA:PRDYAYC OrthoDB:EOG4TF0N7 GenomeRNAi:378948
NextBio:100871 ArrayExpress:A6NDE4 Bgee:A6NDE4 CleanEx:HS_RBMY1B
Genevestigator:A6NDE4 Uniprot:A6NDE4
Length = 496
Score = 141 (54.7 bits), Expect = 5.2e-06, P = 5.2e-06
Identities = 31/78 (39%), Positives = 49/78 (62%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
L + GL+ +E+ML+ F KH PI ++ L++D+ T SRGFAF+ F + DA A +
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDM 68
Query: 510 NGTTLEKNGQILRVAYAK 527
NG +L +G+ ++V AK
Sbjct: 69 NGKSL--HGKAIKVEQAK 84
Score = 121 (47.7 bits), Expect = 0.00077, P = 0.00077
Identities = 32/89 (35%), Positives = 51/89 (57%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAAR-AMM 345
G + + GL+++T E+ L + + GP+ V +IK+R S SRGFAFI F + A+ A
Sbjct: 8 GKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSK-SRGFAFITFENPADAKNAAK 66
Query: 346 DRIGDDGLVVDGRKLFFEYSSKPTGGSGG 374
D +G + G+ + E + KP+ SGG
Sbjct: 67 DM---NGKSLHGKAIKVEQAKKPSFQSGG 92
>UNIPROTKB|A6NEQ0 [details] [associations]
symbol:RBMY1E "RNA-binding motif protein, Y chromosome,
family 1 member E" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 HPA:HPA001534 UniGene:Hs.725744 OrthoDB:EOG4TF0N7
EMBL:AC007322 IPI:IPI00472030 RefSeq:NP_001006118.2
ProteinModelPortal:A6NEQ0 SMR:A6NEQ0 STRING:A6NEQ0
PhosphoSite:A6NEQ0 PRIDE:A6NEQ0 DNASU:378950
Ensembl:ENST00000382659 GeneID:378950 KEGG:hsa:378950
UCSC:uc004fux.4 CTD:378950 GeneCards:GC0YM024027 HGNC:HGNC:23916
neXtProt:NX_A6NEQ0 PharmGKB:PA134905273 OMA:PYCDREH
GenomeRNAi:378950 NextBio:100879 ArrayExpress:A6NEQ0 Bgee:A6NEQ0
Genevestigator:A6NEQ0 Uniprot:A6NEQ0
Length = 496
Score = 141 (54.7 bits), Expect = 5.2e-06, P = 5.2e-06
Identities = 31/78 (39%), Positives = 49/78 (62%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
L + GL+ +E+ML+ F KH PI ++ L++D+ T SRGFAF+ F + DA A +
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDM 68
Query: 510 NGTTLEKNGQILRVAYAK 527
NG +L +G+ ++V AK
Sbjct: 69 NGKSL--HGKAIKVEQAK 84
Score = 121 (47.7 bits), Expect = 0.00077, P = 0.00077
Identities = 32/89 (35%), Positives = 51/89 (57%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAAR-AMM 345
G + + GL+++T E+ L + + GP+ V +IK+R S SRGFAFI F + A+ A
Sbjct: 8 GKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSK-SRGFAFITFENPADAKNAAK 66
Query: 346 DRIGDDGLVVDGRKLFFEYSSKPTGGSGG 374
D +G + G+ + E + KP+ SGG
Sbjct: 67 DM---NGKSLHGKAIKVEQAKKPSFQSGG 92
>UNIPROTKB|P0C7P1 [details] [associations]
symbol:RBMY1D "RNA-binding motif protein, Y chromosome,
family 1 member D" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 UniGene:Hs.380450 HPA:HPA001534 OrthoDB:EOG4TF0N7
EMBL:AC007322 IPI:IPI00215689 RefSeq:NP_001006120.2
ProteinModelPortal:P0C7P1 SMR:P0C7P1 PhosphoSite:P0C7P1
DMDM:190360153 PRIDE:P0C7P1 Ensembl:ENST00000382677
Ensembl:ENST00000382680 GeneID:378949 KEGG:hsa:378949
UCSC:uc004fuo.4 CTD:378949 GeneCards:GC0YM024026 HGNC:HGNC:23915
neXtProt:NX_P0C7P1 PharmGKB:PA134863616 InParanoid:P0C7P1
OMA:FIGGFNR GenomeRNAi:378949 NextBio:100875 ArrayExpress:P0C7P1
Bgee:P0C7P1 Genevestigator:P0C7P1 Uniprot:P0C7P1
Length = 496
Score = 141 (54.7 bits), Expect = 5.2e-06, P = 5.2e-06
Identities = 31/78 (39%), Positives = 49/78 (62%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
L + GL+ +E+ML+ F KH PI ++ L++D+ T SRGFAF+ F + DA A +
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDM 68
Query: 510 NGTTLEKNGQILRVAYAK 527
NG +L +G+ ++V AK
Sbjct: 69 NGKSL--HGKAIKVEQAK 84
Score = 121 (47.7 bits), Expect = 0.00077, P = 0.00077
Identities = 32/89 (35%), Positives = 51/89 (57%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAAR-AMM 345
G + + GL+++T E+ L + + GP+ V +IK+R S SRGFAFI F + A+ A
Sbjct: 8 GKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSK-SRGFAFITFENPADAKNAAK 66
Query: 346 DRIGDDGLVVDGRKLFFEYSSKPTGGSGG 374
D +G + G+ + E + KP+ SGG
Sbjct: 67 DM---NGKSLHGKAIKVEQAKKPSFQSGG 92
>UNIPROTKB|P0DJD3 [details] [associations]
symbol:RBMY1A1 "RNA-binding motif protein, Y chromosome,
family 1 member A1" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IDA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0000381
InterPro:IPR012604 Pfam:PF08081 EMBL:X76059 EMBL:BC047768
EMBL:BC070298 EMBL:AC010141 IPI:IPI00332760 IPI:IPI00872545
IPI:IPI00872656 PIR:A49418 RefSeq:NP_005049.1 UniGene:Hs.380450
PDB:2FY1 PDBsum:2FY1 ProteinModelPortal:P0DJD3 SMR:P0DJD3
DMDM:27805716 PRIDE:P0DJD3 Ensembl:ENST00000303902
Ensembl:ENST00000382707 GeneID:5940 KEGG:hsa:5940 CTD:5940
GeneCards:GC0YP023675 HGNC:HGNC:9912 HPA:HPA001534 MIM:400006
neXtProt:NX_P0DJD3 OMA:PREYASE PhylomeDB:P0DJD3 GenomeRNAi:5940
Bgee:P0DJD3 CleanEx:HS_RBMY1A1 GermOnline:ENSG00000174622
Uniprot:P0DJD3
Length = 496
Score = 141 (54.7 bits), Expect = 5.2e-06, P = 5.2e-06
Identities = 31/78 (39%), Positives = 49/78 (62%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
L + GL+ +E+ML+ F KH PI ++ L++D+ T SRGFAF+ F + DA A +
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDM 68
Query: 510 NGTTLEKNGQILRVAYAK 527
NG +L +G+ ++V AK
Sbjct: 69 NGKSL--HGKAIKVEQAK 84
Score = 121 (47.7 bits), Expect = 0.00077, P = 0.00077
Identities = 32/89 (35%), Positives = 51/89 (57%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAAR-AMM 345
G + + GL+++T E+ L + + GP+ V +IK+R S SRGFAFI F + A+ A
Sbjct: 8 GKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSK-SRGFAFITFENPADAKNAAK 66
Query: 346 DRIGDDGLVVDGRKLFFEYSSKPTGGSGG 374
D +G + G+ + E + KP+ SGG
Sbjct: 67 DM---NGKSLHGKAIKVEQAKKPSFQSGG 92
>TAIR|locus:2178198 [details] [associations]
symbol:AT5G09880 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002688 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q14103
TIGRFAMs:TIGR01622 KO:K13091 OMA:AGWDTEI EMBL:AY054603
IPI:IPI00543371 RefSeq:NP_568220.1 UniGene:At.6946
ProteinModelPortal:Q93Y25 SMR:Q93Y25 STRING:Q93Y25 PRIDE:Q93Y25
EnsemblPlants:AT5G09880.1 GeneID:830848 KEGG:ath:AT5G09880
TAIR:At5g09880 InParanoid:Q93Y25 PhylomeDB:Q93Y25
ProtClustDB:CLSN2723619 Genevestigator:Q93Y25 Uniprot:Q93Y25
Length = 527
Score = 99 (39.9 bits), Expect = 5.2e-06, Sum P(3) = 5.2e-06
Identities = 29/93 (31%), Positives = 49/93 (52%)
Query: 288 TIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDF---PSVGAARAM 344
T+ + K TE D+Y+ ++ G +R VR+I +RNS S+G +I+F SV A A+
Sbjct: 169 TVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIAL 228
Query: 345 MDRI--GDDGLVV--DGRKLFFEYSSKPTGGSG 373
++ G +V + K + +S GG+G
Sbjct: 229 SGQLFLGQPVMVKPSEAEKNLAQSNSTTVGGTG 261
Score = 88 (36.0 bits), Expect = 5.2e-06, Sum P(3) = 5.2e-06
Identities = 34/108 (31%), Positives = 48/108 (44%)
Query: 427 AEMN--SSNPIPLGKKGSDTGPT-HVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDK 483
AE N SN +G TGP L V L E LR F P++ ++L D
Sbjct: 245 AEKNLAQSNSTTVG----GTGPADRKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDP 300
Query: 484 FTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYAKSILG 531
T +GF F+ F +E + A A NG LE G+ ++V+ +G
Sbjct: 301 ETGQCKGFGFIQFVQLEHSKAAQIALNGK-LEIAGRTIKVSSVSDHIG 347
Score = 46 (21.3 bits), Expect = 5.2e-06, Sum P(3) = 5.2e-06
Identities = 18/55 (32%), Positives = 24/55 (43%)
Query: 36 DERRFLDERYSRDNIYPRNAFQRENYPPPPVGLWPQSRRRNYEEDYSLDRESRRH 90
D R ER D PR+ +RE +SRR E + ++R SRRH
Sbjct: 103 DRERSSKERDRSDRDKPRDRERREREKRSS----SRSRREEKEPEV-VERGSRRH 152
Score = 42 (19.8 bits), Expect = 1.3e-05, Sum P(3) = 1.3e-05
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 197 SRDRERDKRCLSRERE 212
SRD+E D+ S+ER+
Sbjct: 97 SRDKESDRERSSKERD 112
Score = 41 (19.5 bits), Expect = 1.9e-05, Sum P(4) = 1.9e-05
Identities = 20/62 (32%), Positives = 24/62 (38%)
Query: 32 GGSYDERRFLDERYSRDNIYPRNAFQRENYPPPPVGLWPQSRRRNYEE-DYSLDRESRRH 90
GG D R R SRD R+ RE S+ R+ + D DRE R
Sbjct: 70 GGKRDRERER-HRSSRDKDRERDKV-REGSRDKESDRERSSKERDRSDRDKPRDRERRER 127
Query: 91 EK 92
EK
Sbjct: 128 EK 129
Score = 40 (19.1 bits), Expect = 2.0e-05, Sum P(3) = 2.0e-05
Identities = 7/15 (46%), Positives = 12/15 (80%)
Query: 198 RDRERDKRCLSRERE 212
RDRER++ SR+++
Sbjct: 73 RDRERERHRSSRDKD 87
Score = 40 (19.1 bits), Expect = 2.0e-05, Sum P(3) = 2.0e-05
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 198 RDRERDK-RCLSRERE 212
+DRERDK R SR++E
Sbjct: 86 KDRERDKVREGSRDKE 101
Score = 38 (18.4 bits), Expect = 1.9e-05, Sum P(4) = 1.9e-05
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 200 RERDKRCLSRER 211
RER+KR SR R
Sbjct: 125 REREKRSSSRSR 136
Score = 38 (18.4 bits), Expect = 3.8e-05, Sum P(4) = 3.8e-05
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 110 DSFPEFDKFRDGYRNIENYRDHGFERPPR 138
D E DK R+G R+ E+ R+ + R
Sbjct: 85 DKDRERDKVREGSRDKESDRERSSKERDR 113
>UNIPROTKB|F1LNF1 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310403
GO:GO:0005730 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0071013 GO:GO:0050658 GO:GO:0043047
GeneTree:ENSGT00700000104376 OMA:HYSARTS IPI:IPI00867934
ProteinModelPortal:F1LNF1 Ensembl:ENSRNOT00000015152
ArrayExpress:F1LNF1 Uniprot:F1LNF1
Length = 352
Score = 106 (42.4 bits), Expect = 5.3e-06, Sum P(3) = 5.3e-06
Identities = 31/83 (37%), Positives = 43/83 (51%)
Query: 289 IVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAA-RAMMDR 347
+ + GLS +TTEE L +WG L V+++ S SRGF F+ F S+ AM R
Sbjct: 22 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 81
Query: 348 IGD-DGLVVDGRKLFF-EYSSKP 368
DG VV+ ++ E S KP
Sbjct: 82 PHSIDGRVVEPKRAVAREESGKP 104
Score = 74 (31.1 bits), Expect = 5.3e-06, Sum P(3) = 5.3e-06
Identities = 19/67 (28%), Positives = 31/67 (46%)
Query: 438 GKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFH 497
GK G+ L V G+ E +E LR F ++ I + ++ D+ + RGF F+ F
Sbjct: 102 GKPGAHV-TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFD 160
Query: 498 SVEDASK 504
+ K
Sbjct: 161 DHDPVDK 167
Score = 45 (20.9 bits), Expect = 5.3e-06, Sum P(3) = 5.3e-06
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 615 GFYYDGNTGLYYDGNSGIWYSYDQQTQQYIPCTDQN 650
G Y + G Y GN + +Y+QQ Y P N
Sbjct: 284 GGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGN 319
>UNIPROTKB|Q3SZN4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
Length = 213
Score = 132 (51.5 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 32/97 (32%), Positives = 53/97 (54%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
G + V GLS T E+ L Q+ +++G + V V+K+R + SRGF F+ F ++ A+ M
Sbjct: 6 GKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM- 64
Query: 347 RIGDDGLVVDGRKLFFEYSSKPTGGSGGHYGQESAMG 383
+ +G VDGR++ + + K + Y SA G
Sbjct: 65 -MAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGG 100
Score = 126 (49.4 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 32/85 (37%), Positives = 50/85 (58%)
Query: 442 SDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVED 501
SD G L V GL +E+ L FSK+ I ++ +V+D+ T SRGF F+ F +++D
Sbjct: 3 SDEGK---LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 502 ASKALEATNGTTLEKNGQILRVAYA 526
A A+ A NG +++ G+ +RV A
Sbjct: 60 AKDAMMAMNGKSVD--GRQIRVDQA 82
Score = 37 (18.1 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 10/29 (34%), Positives = 11/29 (37%)
Query: 925 GSGDSNRDFALKKGSVDSMPFPPGVGGRG 953
G NR + GS F G GRG
Sbjct: 83 GKSSDNRSRGYRGGSAGGRGFFRGGRGRG 111
>UNIPROTKB|F1Q1K6 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:HYSARTS EMBL:AAEX03009384
Ensembl:ENSCAFT00000004622 Uniprot:F1Q1K6
Length = 353
Score = 106 (42.4 bits), Expect = 5.4e-06, Sum P(3) = 5.4e-06
Identities = 31/83 (37%), Positives = 43/83 (51%)
Query: 289 IVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAA-RAMMDR 347
+ + GLS +TTEE L +WG L V+++ S SRGF F+ F S+ AM R
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 82
Query: 348 IGD-DGLVVDGRKLFF-EYSSKP 368
DG VV+ ++ E S KP
Sbjct: 83 PHSIDGRVVEPKRAVAREESGKP 105
Score = 74 (31.1 bits), Expect = 5.4e-06, Sum P(3) = 5.4e-06
Identities = 19/67 (28%), Positives = 31/67 (46%)
Query: 438 GKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFH 497
GK G+ L V G+ E +E LR F ++ I + ++ D+ + RGF F+ F
Sbjct: 103 GKPGAHV-TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFD 161
Query: 498 SVEDASK 504
+ K
Sbjct: 162 DHDPVDK 168
Score = 45 (20.9 bits), Expect = 5.4e-06, Sum P(3) = 5.4e-06
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 615 GFYYDGNTGLYYDGNSGIWYSYDQQTQQYIPCTDQN 650
G Y + G Y GN + +Y+QQ Y P N
Sbjct: 285 GGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGN 320
>UNIPROTKB|P22626 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0097157 "pre-mRNA intronic
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0006397 "mRNA processing" evidence=IDA]
[GO:0050658 "RNA transport" evidence=IDA] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
GO:GO:0071013 GO:GO:0050658 eggNOG:COG0724 GO:GO:0043047
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
HPA:HPA001666 CTD:3181 KO:K13158 OMA:HYSARTS EMBL:M29064
EMBL:M29065 EMBL:U09123 EMBL:U09120 EMBL:U09121 EMBL:U09122
EMBL:D28877 EMBL:AK289429 IPI:IPI00396378 IPI:IPI00414696
PIR:A56845 RefSeq:NP_002128.1 RefSeq:NP_112533.1 UniGene:Hs.487774
PDB:1X4B PDBsum:1X4B ProteinModelPortal:P22626 SMR:P22626
IntAct:P22626 MINT:MINT-4998934 STRING:P22626 PhosphoSite:P22626
DMDM:133257 REPRODUCTION-2DPAGE:IPI00396378
REPRODUCTION-2DPAGE:IPI00414696 REPRODUCTION-2DPAGE:P22626
SWISS-2DPAGE:P22626 UCD-2DPAGE:P22626 PaxDb:P22626 PRIDE:P22626
Ensembl:ENST00000354667 Ensembl:ENST00000356674
Ensembl:ENST00000360787 GeneID:3181 KEGG:hsa:3181 UCSC:uc003sxr.4
UCSC:uc003sxs.4 GeneCards:GC07M026229 HGNC:HGNC:5033 HPA:CAB012403
MIM:600124 neXtProt:NX_P22626 PharmGKB:PA162391140 PhylomeDB:P22626
ChiTaRS:HNRNPA2B1 EvolutionaryTrace:P22626 GenomeRNAi:3181
NextBio:12622 PMAP-CutDB:P22626 Bgee:P22626 CleanEx:HS_HNRNPA2B1
Genevestigator:P22626 GermOnline:ENSG00000122566 Uniprot:P22626
Length = 353
Score = 106 (42.4 bits), Expect = 5.4e-06, Sum P(3) = 5.4e-06
Identities = 31/83 (37%), Positives = 43/83 (51%)
Query: 289 IVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAA-RAMMDR 347
+ + GLS +TTEE L +WG L V+++ S SRGF F+ F S+ AM R
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 82
Query: 348 IGD-DGLVVDGRKLFF-EYSSKP 368
DG VV+ ++ E S KP
Sbjct: 83 PHSIDGRVVEPKRAVAREESGKP 105
Score = 74 (31.1 bits), Expect = 5.4e-06, Sum P(3) = 5.4e-06
Identities = 19/67 (28%), Positives = 31/67 (46%)
Query: 438 GKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFH 497
GK G+ L V G+ E +E LR F ++ I + ++ D+ + RGF F+ F
Sbjct: 103 GKPGAHV-TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFD 161
Query: 498 SVEDASK 504
+ K
Sbjct: 162 DHDPVDK 168
Score = 45 (20.9 bits), Expect = 5.4e-06, Sum P(3) = 5.4e-06
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 615 GFYYDGNTGLYYDGNSGIWYSYDQQTQQYIPCTDQN 650
G Y + G Y GN + +Y+QQ Y P N
Sbjct: 285 GGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGN 320
>RGD|1310403 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein A2/B1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA;ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IEA;ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA;ISO] [GO:0050658 "RNA transport" evidence=IEA;ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310403 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 GO:GO:0071013 GO:GO:0050658
eggNOG:COG0724 GO:GO:0043047 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
CTD:3181 KO:K13158 EMBL:AB006815 EMBL:AB006816 EMBL:AB006817
EMBL:AB006818 IPI:IPI00212969 IPI:IPI00867934 IPI:IPI00923129
IPI:IPI00923135 RefSeq:NP_001098083.1 UniGene:Rn.231911
ProteinModelPortal:A7VJC2 SMR:A7VJC2 STRING:A7VJC2 PRIDE:A7VJC2
GeneID:362361 KEGG:rno:362361 UCSC:RGD:1310403 HOVERGEN:HBG108415
InParanoid:A7VJC2 NextBio:679650 ArrayExpress:A7VJC2
Genevestigator:A7VJC2 Uniprot:A7VJC2
Length = 353
Score = 106 (42.4 bits), Expect = 5.4e-06, Sum P(3) = 5.4e-06
Identities = 31/83 (37%), Positives = 43/83 (51%)
Query: 289 IVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAA-RAMMDR 347
+ + GLS +TTEE L +WG L V+++ S SRGF F+ F S+ AM R
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 82
Query: 348 IGD-DGLVVDGRKLFF-EYSSKP 368
DG VV+ ++ E S KP
Sbjct: 83 PHSIDGRVVEPKRAVAREESGKP 105
Score = 74 (31.1 bits), Expect = 5.4e-06, Sum P(3) = 5.4e-06
Identities = 19/67 (28%), Positives = 31/67 (46%)
Query: 438 GKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFH 497
GK G+ L V G+ E +E LR F ++ I + ++ D+ + RGF F+ F
Sbjct: 103 GKPGAHV-TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFD 161
Query: 498 SVEDASK 504
+ K
Sbjct: 162 DHDPVDK 168
Score = 45 (20.9 bits), Expect = 5.4e-06, Sum P(3) = 5.4e-06
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 615 GFYYDGNTGLYYDGNSGIWYSYDQQTQQYIPCTDQN 650
G Y + G Y GN + +Y+QQ Y P N
Sbjct: 285 GGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGN 320
>ZFIN|ZDB-GENE-040426-2706 [details] [associations]
symbol:srsf2a "serine/arginine-rich splicing
factor 2a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2706
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
HOVERGEN:HBG107480 eggNOG:NOG254270 GeneTree:ENSGT00700000104403
HOGENOM:HOG000276233 KO:K12891 OrthoDB:EOG4D26RH OMA:SAPPRRY
EMBL:CR352342 EMBL:BC046045 IPI:IPI00482409 RefSeq:NP_998547.1
UniGene:Dr.76609 SMR:Q7ZV13 STRING:Q7ZV13
Ensembl:ENSDART00000080173 GeneID:406691 KEGG:dre:406691 CTD:406691
InParanoid:Q7ZV13 NextBio:20818218 Uniprot:Q7ZV13
Length = 225
Score = 133 (51.9 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 33/90 (36%), Positives = 47/90 (52%)
Query: 438 GKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFH 497
G+ D L V L E LR F K+ + D+ + RD++T SRGFAF+ FH
Sbjct: 4 GRPPPDVEGMTSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFH 63
Query: 498 SVEDASKALEATNGTTLEKNGQILRVAYAK 527
DA A++A +G L+ G+ LRV A+
Sbjct: 64 DKRDAEDAMDAMDGALLD--GRELRVQMAR 91
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 102 (41.0 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 452 VRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNG 511
++ E D+E L+ F K P ++++ D+ + S+GF F+ F EDA KA++ NG
Sbjct: 131 IKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNG 189
Query: 512 TTLEKNGQILRVAYAK 527
L NG+ + V A+
Sbjct: 190 KEL--NGKQIYVGRAQ 203
Score = 98 (39.6 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 24/62 (38%), Positives = 36/62 (58%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
L V+ LD+ D+E LR EFS I +++ + S+GF F+ F S E+A+KA+
Sbjct: 232 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEM 289
Query: 510 NG 511
NG
Sbjct: 290 NG 291
Score = 89 (36.4 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
Identities = 19/75 (25%), Positives = 42/75 (56%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
G I +K L + + LY + +G + +V+ + N S+G+ F+ F + AA ++
Sbjct: 35 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIE 92
Query: 347 RIGDDGLVVDGRKLF 361
++ +G++++ RK+F
Sbjct: 93 KM--NGMLLNDRKVF 105
Score = 86 (35.3 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 19/79 (24%), Positives = 43/79 (54%)
Query: 289 IVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRI 348
+ +K + +E L ++ ++GP V+V+ + SG S+GF F+ F A+ +D +
Sbjct: 129 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 187
Query: 349 GDDGLVVDGRKLFFEYSSK 367
+G ++G++++ + K
Sbjct: 188 --NGKELNGKQIYVGRAQK 204
>UNIPROTKB|F1NIB4 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AADN02028501 EMBL:AADN02028502
EMBL:AADN02028503 IPI:IPI00603451 ProteinModelPortal:F1NIB4
Ensembl:ENSGALT00000023233 ArrayExpress:F1NIB4 Uniprot:F1NIB4
Length = 212
Score = 91 (37.1 bits), Expect = 5.6e-06, Sum P(2) = 5.6e-06
Identities = 22/71 (30%), Positives = 39/71 (54%)
Query: 291 VKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGD 350
V GLS T+++DL ++G + + + N+G SRGF FI F G+ ++++
Sbjct: 4 VGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQKEH 63
Query: 351 --DGLVVDGRK 359
DG ++D +K
Sbjct: 64 RLDGRLIDPKK 74
Score = 87 (35.7 bits), Expect = 5.6e-06, Sum P(2) = 5.6e-06
Identities = 21/62 (33%), Positives = 30/62 (48%)
Query: 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKA 505
P + V GL+ A EE +R F + I+ + L D T+ RGF F+ F + K
Sbjct: 82 PVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKV 141
Query: 506 LE 507
LE
Sbjct: 142 LE 143
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 102 (41.0 bits), Expect = 5.8e-06, Sum P(2) = 5.8e-06
Identities = 29/91 (31%), Positives = 50/91 (54%)
Query: 437 LGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHF 496
LG K + T+V + + E D+E L+ FS+ ++++RD + S+GF F+ +
Sbjct: 183 LGAKAKEF--TNVYI-KNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSY 238
Query: 497 HSVEDASKALEATNGTTLEKNGQILRVAYAK 527
EDA+KA+E NG E G+++ V A+
Sbjct: 239 EKHEDANKAVEEMNGK--EITGKVIFVGRAQ 267
Score = 98 (39.6 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 23/62 (37%), Positives = 36/62 (58%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
L ++ LD+ D+E LR EFS I +++ + S+GF F+ F S E+A+KA+
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEM 353
Query: 510 NG 511
NG
Sbjct: 354 NG 355
Score = 96 (38.9 bits), Expect = 8.1e-05, Sum P(2) = 8.1e-05
Identities = 23/63 (36%), Positives = 36/63 (57%)
Query: 452 VRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNG 511
++ LD+ D + L FS I ++V D+ + S+G+AF+HF + E A KA+E NG
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 512 TTL 514
L
Sbjct: 161 MLL 163
Score = 90 (36.7 bits), Expect = 5.8e-06, Sum P(2) = 5.8e-06
Identities = 19/75 (25%), Positives = 43/75 (57%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
G + +K L + + LY + +G + +V+ + N S+G+AF+ F + AA ++
Sbjct: 99 GNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIE 156
Query: 347 RIGDDGLVVDGRKLF 361
++ +G++++ RK+F
Sbjct: 157 KM--NGMLLNDRKVF 169
Score = 85 (35.0 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 21/83 (25%), Positives = 41/83 (49%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
P ++ V L TE LY+ + GP+ +RV ++ + S G+A+++F A
Sbjct: 9 PMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERA 68
Query: 345 MDRIGDDGLVVDGRKLFFEYSSK 367
+D + D V+ G+ + +S +
Sbjct: 69 LDTMNFD--VIKGKPIRIMWSQR 89
Score = 80 (33.2 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 17/79 (21%), Positives = 43/79 (54%)
Query: 289 IVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRI 348
+ +K ++ +E+L ++ +++G V+V+++ SG S+GF F+ + A ++ +
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 349 GDDGLVVDGRKLFFEYSSK 367
+G + G+ +F + K
Sbjct: 252 --NGKEITGKVIFVGRAQK 268
>RGD|1310724 [details] [associations]
symbol:Snrnp35 "small nuclear ribonucleoprotein 35 (U11/U12)"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0005689 "U12-type spliceosomal complex" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310724
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HSSP:Q9V535 eggNOG:COG0724 GO:GO:0005689 CTD:11066
HOGENOM:HOG000006374 HOVERGEN:HBG104583 KO:K13155 OrthoDB:EOG4MSD0C
EMBL:BC086435 IPI:IPI00189830 RefSeq:NP_001014149.1
UniGene:Rn.79076 ProteinModelPortal:Q5U1W5 STRING:Q5U1W5
GeneID:360803 KEGG:rno:360803 UCSC:RGD:1310724 InParanoid:Q5U1W5
NextBio:674154 Genevestigator:Q5U1W5 Uniprot:Q5U1W5
Length = 244
Score = 134 (52.2 bits), Expect = 5.9e-06, P = 5.9e-06
Identities = 28/86 (32%), Positives = 53/86 (61%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
P T+ V L+ +T EE L ++ + +G +R +R++++ +G S+G+AFI++ RA+
Sbjct: 49 PLLTLFVARLNSQTKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKE---ERAL 105
Query: 345 MDRIGD-DGLVVDGRKLFFEYSSKPT 369
+ D DGLV+D ++F +Y + T
Sbjct: 106 LKAYRDADGLVIDQHEIFVDYELERT 131
>UNIPROTKB|Q5U1W5 [details] [associations]
symbol:Snrnp35 "U11/U12 small nuclear ribonucleoprotein 35
kDa protein" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1310724 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q9V535 eggNOG:COG0724
GO:GO:0005689 CTD:11066 HOGENOM:HOG000006374 HOVERGEN:HBG104583
KO:K13155 OrthoDB:EOG4MSD0C EMBL:BC086435 IPI:IPI00189830
RefSeq:NP_001014149.1 UniGene:Rn.79076 ProteinModelPortal:Q5U1W5
STRING:Q5U1W5 GeneID:360803 KEGG:rno:360803 UCSC:RGD:1310724
InParanoid:Q5U1W5 NextBio:674154 Genevestigator:Q5U1W5
Uniprot:Q5U1W5
Length = 244
Score = 134 (52.2 bits), Expect = 5.9e-06, P = 5.9e-06
Identities = 28/86 (32%), Positives = 53/86 (61%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
P T+ V L+ +T EE L ++ + +G +R +R++++ +G S+G+AFI++ RA+
Sbjct: 49 PLLTLFVARLNSQTKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKE---ERAL 105
Query: 345 MDRIGD-DGLVVDGRKLFFEYSSKPT 369
+ D DGLV+D ++F +Y + T
Sbjct: 106 LKAYRDADGLVIDQHEIFVDYELERT 131
>TAIR|locus:2159401 [details] [associations]
symbol:GR-RBP3 "glycine-rich RNA-binding protein 3"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0009409 "response to cold"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005507
"copper ion binding" evidence=IDA] [GO:0006626 "protein targeting
to mitochondrion" evidence=RCA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0034968 "histone lysine methylation"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005739 GO:GO:0005524
EMBL:CP002688 GenomeReviews:BA000015_GR Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005507 EMBL:AB006696 eggNOG:COG0724
HSSP:Q14103 KO:K12741 EMBL:AY060565 EMBL:AY125548 EMBL:AB493804
IPI:IPI00542729 RefSeq:NP_200911.1 UniGene:At.24064
ProteinModelPortal:Q9FNR1 SMR:Q9FNR1 STRING:Q9FNR1 PaxDb:Q9FNR1
PRIDE:Q9FNR1 EnsemblPlants:AT5G61030.1 GeneID:836224
KEGG:ath:AT5G61030 GeneFarm:3953 TAIR:At5g61030
HOGENOM:HOG000029199 InParanoid:Q9FNR1 OMA:YANDRTS
ProtClustDB:CLSN2916423 Genevestigator:Q9FNR1 Uniprot:Q9FNR1
Length = 309
Score = 133 (51.9 bits), Expect = 6.2e-06, Sum P(2) = 6.2e-06
Identities = 30/77 (38%), Positives = 48/77 (62%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
L + G+ DE+ LR F+K+ + D R++ D+ T SRGF F+ F S E AS A++A
Sbjct: 42 LFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQAL 101
Query: 510 NGTTLEKNGQILRVAYA 526
+G L +G++++V YA
Sbjct: 102 DGRDL--HGRVVKVNYA 116
Score = 120 (47.3 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 30/95 (31%), Positives = 49/95 (51%)
Query: 286 SGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMM 345
S + + G++ E+ L + ++G + RVI +R +G SRGF F+ F S AA + +
Sbjct: 39 SSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAI 98
Query: 346 DRIGDDGLVVDGRKLFFEYSSKPTGGSG---GHYG 377
+ DG + GR + Y++ T G G G YG
Sbjct: 99 QAL--DGRDLHGRVVKVNYANDRTSGGGFGGGGYG 131
Score = 47 (21.6 bits), Expect = 6.2e-06, Sum P(2) = 6.2e-06
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 606 SGYYYDAASGFYYDGNTGLYYDGNSGIWY 634
SG Y A G Y GN+G Y GN+ Y
Sbjct: 153 SGGYGGGAGG--YGGNSGGGYGGNAAGGY 179
Score = 43 (20.2 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 370 GGSGGHYGQESAMGA 384
GG+GG YG G+
Sbjct: 195 GGAGGGYGSSGGFGS 209
>UNIPROTKB|B4DN89 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471099 EMBL:AC005837 UniGene:Hs.584801 HGNC:HGNC:10783
ChiTaRS:SRSF2 EMBL:AK297813 IPI:IPI01011463
ProteinModelPortal:B4DN89 STRING:B4DN89 PRIDE:B4DN89
Ensembl:ENST00000508921 UCSC:uc010wtg.2 ArrayExpress:B4DN89
Bgee:B4DN89 Uniprot:B4DN89
Length = 209
Score = 131 (51.2 bits), Expect = 6.2e-06, P = 6.2e-06
Identities = 32/90 (35%), Positives = 47/90 (52%)
Query: 438 GKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFH 497
G+ D L V L + LR F K+ + D+ + RD++T SRGFAF+ FH
Sbjct: 4 GRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFH 63
Query: 498 SVEDASKALEATNGTTLEKNGQILRVAYAK 527
DA A++A +G L+ G+ LRV A+
Sbjct: 64 DKRDAEDAMDAMDGAVLD--GRELRVQMAR 91
>TAIR|locus:2160752 [details] [associations]
symbol:AT5G06210 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AP002544 HOGENOM:HOG000276232
HSSP:Q61474 EMBL:AY062714 EMBL:AY093349 EMBL:AY087577
IPI:IPI00530408 RefSeq:NP_196239.1 UniGene:At.27256
ProteinModelPortal:Q9FFZ6 SMR:Q9FFZ6 STRING:Q9FFZ6 PaxDb:Q9FFZ6
PRIDE:Q9FFZ6 EnsemblPlants:AT5G06210.1 GeneID:830508
KEGG:ath:AT5G06210 TAIR:At5g06210 InParanoid:Q9FFZ6 OMA:SDRSKGF
PhylomeDB:Q9FFZ6 ProtClustDB:CLSN2686837 ArrayExpress:Q9FFZ6
Genevestigator:Q9FFZ6 Uniprot:Q9FFZ6
Length = 146
Score = 117 (46.2 bits), Expect = 6.2e-06, P = 6.2e-06
Identities = 29/90 (32%), Positives = 52/90 (57%)
Query: 289 IVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAA-RAMMDR 347
+ + GLS TTE+ L + ++ G + +++ +R S S+GF F+ F S A +A+M+
Sbjct: 36 LFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEF 95
Query: 348 IGDDGLVVDGRKLFFEYS-SKPTGGSGGHY 376
G ++GR +F +Y+ +K + G GG Y
Sbjct: 96 NGQQ---LNGRTIFVDYAKAKQSLGGGGGY 122
Score = 117 (46.2 bits), Expect = 6.2e-06, P = 6.2e-06
Identities = 33/91 (36%), Positives = 48/91 (52%)
Query: 445 GPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASK 504
G L + GL E+ L FSK + + ++V D+ + S+GF F+ F S ++A K
Sbjct: 31 GVASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQK 90
Query: 505 ALEATNGTTLEKNGQILRVAYAKS--ILGPG 533
AL NG L NG+ + V YAK+ LG G
Sbjct: 91 ALMEFNGQQL--NGRTIFVDYAKAKQSLGGG 119
>UNIPROTKB|K7GNR2 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000034855 Uniprot:K7GNR2
Length = 129
Score = 117 (46.2 bits), Expect = 6.2e-06, P = 6.2e-06
Identities = 28/77 (36%), Positives = 45/77 (58%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
L + GL+ +E+ L F K+ I ++ L++D+ T+ SRGFAF+ F S DA A
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 510 NGTTLEKNGQILRVAYA 526
NG +L+ G+ ++V A
Sbjct: 70 NGKSLD--GKAIKVEQA 84
Score = 116 (45.9 bits), Expect = 8.0e-06, P = 8.0e-06
Identities = 27/84 (32%), Positives = 49/84 (58%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
G + + GL+ +T E+ L + ++G + V ++K+R + SRGFAF+ F S A+ D
Sbjct: 8 GKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK---D 64
Query: 347 RIGD-DGLVVDGRKLFFEYSSKPT 369
D +G +DG+ + E ++KP+
Sbjct: 65 AARDMNGKSLDGKAIKVEQATKPS 88
>TAIR|locus:2119495 [details] [associations]
symbol:GR-RBP2 "AT4G13850" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM;IDA] [GO:0009409 "response to cold"
evidence=IGI;IEP;IMP] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0001072
"RNA binding transcription antitermination factor activity"
evidence=IDA] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0009631 "cold acclimation" evidence=IMP]
[GO:0009651 "response to salt stress" evidence=IMP] [GO:0009845
"seed germination" evidence=IMP] [GO:0031564 "transcription
antitermination" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
[GO:0006364 "rRNA processing" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005739 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0005507 GO:GO:0003723
GO:GO:0006970 GO:GO:0009845 GO:GO:0003690 GO:GO:0003697
eggNOG:COG0724 EMBL:AL035528 EMBL:AL161537 HOGENOM:HOG000276232
EMBL:AJ002892 EMBL:AY072361 EMBL:BT002197 EMBL:AY085621 EMBL:X69377
EMBL:Z18189 IPI:IPI00527583 PIR:S31443 PIR:T05254
RefSeq:NP_193121.1 UniGene:At.15585 UniGene:At.2
ProteinModelPortal:Q9SVM8 SMR:Q9SVM8 IntAct:Q9SVM8 STRING:Q9SVM8
PaxDb:Q9SVM8 PRIDE:Q9SVM8 ProMEX:Q9SVM8 EnsemblPlants:AT4G13850.1
GeneID:827019 KEGG:ath:AT4G13850 GeneFarm:3949 TAIR:At4g13850
InParanoid:Q9SVM8 OMA:ISEMDGK PhylomeDB:Q9SVM8 ProtClustDB:PLN03134
Genevestigator:Q9SVM8 Uniprot:Q9SVM8
Length = 158
Score = 117 (46.2 bits), Expect = 6.2e-06, P = 6.2e-06
Identities = 33/104 (31%), Positives = 53/104 (50%)
Query: 286 SGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMM 345
S + + GLS T + L A +G + +VI +R +G SRGF F++F GAA A +
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
Query: 346 DRIGDDGLVVDGRKLFFEYSS-KPT-----GGSGGHYGQESAMG 383
+ DG ++GR + ++ +P+ GG GG+ G G
Sbjct: 94 SEM--DGKELNGRHIRVNPANDRPSAPRAYGGGGGYSGGGGGYG 135
>UNIPROTKB|F1P336 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074656
EMBL:AADN02020638 EMBL:AADN02020639 IPI:IPI00680028
Ensembl:ENSGALT00000033265 ArrayExpress:F1P336 Uniprot:F1P336
Length = 689
Score = 138 (53.6 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 37/104 (35%), Positives = 59/104 (56%)
Query: 286 SGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMM 345
S T+ V+GLS+ TTEE L + G + R++ +R++G S+GF F+DF S A+A
Sbjct: 550 SKTLFVRGLSEDTTEETLRESFE--GSIS-ARIVTDRDTGSSKGFGFVDFSSPEDAKAAK 606
Query: 346 DRIGDDGLVVDGRKLFFEYSSKPTG------GSGGHYGQESAMG 383
+ + +DG +DG K+ +++ KP G G GG +G G
Sbjct: 607 EAM-EDG-EIDGNKVTLDFA-KPKGEFQRGGGFGGGFGGRGGRG 647
Score = 107 (42.7 bits), Expect = 6.3e-06, Sum P(3) = 6.3e-06
Identities = 32/91 (35%), Positives = 41/91 (45%)
Query: 437 LGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHF 496
+ +G + L VRGL E EE LR F R+V D+ T S+GF F+ F
Sbjct: 540 MNARGGFNQQSKTLFVRGLSEDTTEETLRESFEGSI---SARIVTDRDTGSSKGFGFVDF 596
Query: 497 HSVEDASKALEATNGTTLEKNGQILRVAYAK 527
S EDA A EA ++ N L A K
Sbjct: 597 SSPEDAKAAKEAMEDGEIDGNKVTLDFAKPK 627
Score = 97 (39.2 bits), Expect = 0.00043, Sum P(3) = 0.00043
Identities = 27/88 (30%), Positives = 46/88 (52%)
Query: 439 KKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHS 498
+KG + L+V L A EE L+ F K IK + + + +G+AF+ F +
Sbjct: 450 QKGGGERESKTLIVNNLSYAASEETLQELFKKATSIKMPQNNQGR----PKGYAFVEFPT 505
Query: 499 VEDASKALEATNGTTLEKNGQILRVAYA 526
EDA +AL + N T +E G+ +R+ ++
Sbjct: 506 AEDAKEALNSCNNTEIE--GRAIRLEFS 531
Score = 92 (37.4 bits), Expect = 6.3e-06, Sum P(3) = 6.3e-06
Identities = 26/100 (26%), Positives = 52/100 (52%)
Query: 286 SGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMM 345
S T++V LS +EE L ++ + ++ + + N G +G+AF++FP+ A+ +
Sbjct: 458 SKTLIVNNLSYAASEETLQELFKKATSIK----MPQNNQGRPKGYAFVEFPTAEDAKEAL 513
Query: 346 DRIGDDGLVVDGRKLFFEYSSKPTGGSG-----GHYGQES 380
+ + ++GR + E+SS P+ G G + Q+S
Sbjct: 514 NSCNNTE--IEGRAIRLEFSS-PSWQKGNMNARGGFNQQS 550
Score = 84 (34.6 bits), Expect = 3.9e-05, Sum P(3) = 3.9e-05
Identities = 21/80 (26%), Positives = 40/80 (50%)
Query: 288 TIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDR 347
T+ VK L + TE+++ + VR++ + G S+G A+I+F + A ++
Sbjct: 370 TLFVKNLPYRVTEDEMKNVFEN---ALEVRLVLNKE-GSSKGMAYIEFKTEAEAEKALEE 425
Query: 348 IGDDGLVVDGRKLFFEYSSK 367
G VDGR + +Y+ +
Sbjct: 426 --KQGTEVDGRAMVIDYTGE 443
Score = 37 (18.1 bits), Expect = 6.3e-06, Sum P(3) = 6.3e-06
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 52 PRNAFQRENYPPPPVGLWPQSRRRNYEEDYSLDRESRRHEK 92
P+N +++ PPP + EE+ S D E E+
Sbjct: 4 PKNQMKQKKMAPPP------KKVEESEEEESSDLEESSGEE 38
>UNIPROTKB|F1SA35 [details] [associations]
symbol:LOC100737421 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:FP326688 RefSeq:XP_003480852.1
Ensembl:ENSSSCT00000014862 GeneID:100737421 KEGG:ssc:100737421
OMA:STFGNIV Uniprot:F1SA35
Length = 349
Score = 109 (43.4 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 30/83 (36%), Positives = 43/83 (51%)
Query: 289 IVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAA-RAMMDR 347
+ + GL +TTE+ L +WG L V+++ ++ SRGF F+ F SV AM R
Sbjct: 23 LFIGGLCSRTTEKSLRNYYQQWGKLTDCVVLRDPSNKRSRGFGFVTFSSVAEVDAAMAAR 82
Query: 348 IGD-DGLVVDGRKLFF-EYSSKP 368
DG VVD ++ E S KP
Sbjct: 83 PHSVDGKVVDPKRAVAREESEKP 105
Score = 75 (31.5 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASK 504
L V G+ E +E LR F K+ I + ++ D+ + RGF F+ F + K
Sbjct: 114 LFVGGIKEDTEEHHLRDYFEKYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDK 168
>UNIPROTKB|F1NU40 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005938 "cell cortex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0042162 "telomeric
DNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005938
GO:GO:0005654 GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0042162
GeneTree:ENSGT00550000074656 IPI:IPI00577202 OMA:ENAMEIR
EMBL:AADN02020638 EMBL:AADN02020639 Ensembl:ENSGALT00000012486
ArrayExpress:F1NU40 Uniprot:F1NU40
Length = 691
Score = 138 (53.6 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 37/104 (35%), Positives = 59/104 (56%)
Query: 286 SGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMM 345
S T+ V+GLS+ TTEE L + G + R++ +R++G S+GF F+DF S A+A
Sbjct: 552 SKTLFVRGLSEDTTEETLRESFE--GSIS-ARIVTDRDTGSSKGFGFVDFSSPEDAKAAK 608
Query: 346 DRIGDDGLVVDGRKLFFEYSSKPTG------GSGGHYGQESAMG 383
+ + +DG +DG K+ +++ KP G G GG +G G
Sbjct: 609 EAM-EDG-EIDGNKVTLDFA-KPKGEFQRGGGFGGGFGGRGGRG 649
Score = 107 (42.7 bits), Expect = 6.4e-06, Sum P(3) = 6.4e-06
Identities = 32/91 (35%), Positives = 41/91 (45%)
Query: 437 LGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHF 496
+ +G + L VRGL E EE LR F R+V D+ T S+GF F+ F
Sbjct: 542 MNARGGFNQQSKTLFVRGLSEDTTEETLRESFEGSI---SARIVTDRDTGSSKGFGFVDF 598
Query: 497 HSVEDASKALEATNGTTLEKNGQILRVAYAK 527
S EDA A EA ++ N L A K
Sbjct: 599 SSPEDAKAAKEAMEDGEIDGNKVTLDFAKPK 629
Score = 97 (39.2 bits), Expect = 0.00043, Sum P(3) = 0.00043
Identities = 27/88 (30%), Positives = 46/88 (52%)
Query: 439 KKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHS 498
+KG + L+V L A EE L+ F K IK + + + +G+AF+ F +
Sbjct: 452 QKGGGERESKTLIVNNLSYAASEETLQELFKKATSIKMPQNNQGR----PKGYAFVEFPT 507
Query: 499 VEDASKALEATNGTTLEKNGQILRVAYA 526
EDA +AL + N T +E G+ +R+ ++
Sbjct: 508 AEDAKEALNSCNNTEIE--GRAIRLEFS 533
Score = 92 (37.4 bits), Expect = 6.4e-06, Sum P(3) = 6.4e-06
Identities = 26/100 (26%), Positives = 52/100 (52%)
Query: 286 SGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMM 345
S T++V LS +EE L ++ + ++ + + N G +G+AF++FP+ A+ +
Sbjct: 460 SKTLIVNNLSYAASEETLQELFKKATSIK----MPQNNQGRPKGYAFVEFPTAEDAKEAL 515
Query: 346 DRIGDDGLVVDGRKLFFEYSSKPTGGSG-----GHYGQES 380
+ + ++GR + E+SS P+ G G + Q+S
Sbjct: 516 NSCNNTE--IEGRAIRLEFSS-PSWQKGNMNARGGFNQQS 552
Score = 84 (34.6 bits), Expect = 3.9e-05, Sum P(3) = 3.9e-05
Identities = 21/80 (26%), Positives = 40/80 (50%)
Query: 288 TIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDR 347
T+ VK L + TE+++ + VR++ + G S+G A+I+F + A ++
Sbjct: 372 TLFVKNLPYRVTEDEMKNVFEN---ALEVRLVLNKE-GSSKGMAYIEFKTEAEAEKALEE 427
Query: 348 IGDDGLVVDGRKLFFEYSSK 367
G VDGR + +Y+ +
Sbjct: 428 --KQGTEVDGRAMVIDYTGE 445
Score = 37 (18.1 bits), Expect = 6.4e-06, Sum P(3) = 6.4e-06
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 52 PRNAFQRENYPPPPVGLWPQSRRRNYEEDYSLDRESRRHEK 92
P+N +++ PPP + EE+ S D E E+
Sbjct: 8 PKNQMKQKKMAPPP------KKVEESEEEESSDLEESSGEE 42
>UNIPROTKB|P15771 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 EMBL:X17199 EMBL:M21791
IPI:IPI00577202 PIR:S08414 RefSeq:NP_990596.1 UniGene:Gga.3663
ProteinModelPortal:P15771 SMR:P15771 STRING:P15771 PRIDE:P15771
GeneID:396201 KEGG:gga:396201 CTD:4691 HOGENOM:HOG000113885
InParanoid:P15771 NextBio:20816253 Uniprot:P15771
Length = 694
Score = 143 (55.4 bits), Expect = 8.2e-05, Sum P(2) = 8.2e-05
Identities = 38/106 (35%), Positives = 60/106 (56%)
Query: 286 SGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMM 345
S T+ V+GLS+ TTEE L + G + R++ +R++G S+GF F+DF S A+A
Sbjct: 552 SKTLFVRGLSEDTTEETLRESFE--GSIS-ARIVTDRDTGSSKGFGFVDFSSPEDAKAAK 608
Query: 346 DRIGDDGLVVDGRKLFFEYSSKPTG------GSGGHYGQESAMGAR 385
+ + +DG +DG K+ +++ KP G G GG +G G R
Sbjct: 609 EAM-EDG-EIDGNKVTLDFA-KPKGEFQRGGGFGGGFGGRGGRGGR 651
Score = 107 (42.7 bits), Expect = 6.5e-06, Sum P(3) = 6.5e-06
Identities = 32/91 (35%), Positives = 41/91 (45%)
Query: 437 LGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHF 496
+ +G + L VRGL E EE LR F R+V D+ T S+GF F+ F
Sbjct: 542 MNARGGFNQQSKTLFVRGLSEDTTEETLRESFEGSI---SARIVTDRDTGSSKGFGFVDF 598
Query: 497 HSVEDASKALEATNGTTLEKNGQILRVAYAK 527
S EDA A EA ++ N L A K
Sbjct: 599 SSPEDAKAAKEAMEDGEIDGNKVTLDFAKPK 629
Score = 97 (39.2 bits), Expect = 0.00044, Sum P(3) = 0.00044
Identities = 27/88 (30%), Positives = 46/88 (52%)
Query: 439 KKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHS 498
+KG + L+V L A EE L+ F K IK + + + +G+AF+ F +
Sbjct: 452 QKGGGERESKTLIVNNLSYAASEETLQELFKKATSIKMPQNNQGR----PKGYAFVEFPT 507
Query: 499 VEDASKALEATNGTTLEKNGQILRVAYA 526
EDA +AL + N T +E G+ +R+ ++
Sbjct: 508 AEDAKEALNSCNNTEIE--GRAIRLEFS 533
Score = 92 (37.4 bits), Expect = 6.5e-06, Sum P(3) = 6.5e-06
Identities = 26/100 (26%), Positives = 52/100 (52%)
Query: 286 SGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMM 345
S T++V LS +EE L ++ + ++ + + N G +G+AF++FP+ A+ +
Sbjct: 460 SKTLIVNNLSYAASEETLQELFKKATSIK----MPQNNQGRPKGYAFVEFPTAEDAKEAL 515
Query: 346 DRIGDDGLVVDGRKLFFEYSSKPTGGSG-----GHYGQES 380
+ + ++GR + E+SS P+ G G + Q+S
Sbjct: 516 NSCNNTE--IEGRAIRLEFSS-PSWQKGNMNARGGFNQQS 552
Score = 84 (34.6 bits), Expect = 4.0e-05, Sum P(3) = 4.0e-05
Identities = 21/80 (26%), Positives = 40/80 (50%)
Query: 288 TIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDR 347
T+ VK L + TE+++ + VR++ + G S+G A+I+F + A ++
Sbjct: 372 TLFVKNLPYRVTEDEMKNVFEN---ALEVRLVLNKE-GSSKGMAYIEFKTEAEAEKALEE 427
Query: 348 IGDDGLVVDGRKLFFEYSSK 367
G VDGR + +Y+ +
Sbjct: 428 --KQGTEVDGRAMVIDYTGE 445
Score = 37 (18.1 bits), Expect = 6.5e-06, Sum P(3) = 6.5e-06
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 52 PRNAFQRENYPPPPVGLWPQSRRRNYEEDYSLDRESRRHEK 92
P+N +++ PPP + EE+ S D E E+
Sbjct: 8 PKNQMKQKKMAPPP------KKVEESEEEESSDLEESSGEE 42
>UNIPROTKB|E1P5S2 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005813 "centrosome" evidence=IDA]
[GO:0015630 "microtubule cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005813 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39 IPI:IPI01015916
SMR:E1P5S2 Ensembl:ENST00000407261 UCSC:uc002xed.3 Uniprot:E1P5S2
Length = 373
Score = 106 (42.4 bits), Expect = 6.5e-06, Sum P(2) = 6.5e-06
Identities = 36/103 (34%), Positives = 51/103 (49%)
Query: 424 APPAEMNSSNPIPLG-KKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRD 482
A AE N + + +KGS GP L V L E+MLR F I+ ++L+ D
Sbjct: 70 ASQAEKNRAAAMANNLQKGS-AGPMR-LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMD 127
Query: 483 KFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525
T S+G+ F+ F E A KALE NG E G+ ++V +
Sbjct: 128 SETGRSKGYGFITFSDSECAKKALEQLNG--FELAGRPMKVGH 168
Score = 79 (32.9 bits), Expect = 6.5e-06, Sum P(2) = 6.5e-06
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 294 LSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGA 340
L+ + DL + + G +R VR+I +RNS S+G A+++F V +
Sbjct: 3 LAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSS 49
>ZFIN|ZDB-GENE-040426-2852 [details] [associations]
symbol:rbm39a "RNA binding motif protein 39a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2852 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HSSP:P11940
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 HOGENOM:HOG000236253
KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
GeneTree:ENSGT00690000102089 EMBL:BX001056 EMBL:BC044487
IPI:IPI00498221 RefSeq:NP_001012304.1 UniGene:Dr.38353 SMR:Q803H1
Ensembl:ENSDART00000017973 Ensembl:ENSDART00000135435 GeneID:406251
KEGG:dre:406251 CTD:406251 NextBio:20817886 Uniprot:Q803H1
Length = 523
Score = 107 (42.7 bits), Expect = 6.6e-06, Sum P(2) = 6.6e-06
Identities = 36/103 (34%), Positives = 50/103 (48%)
Query: 424 APPAEMNSSNPIPLG-KKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRD 482
A AE N + + +KGS GP L V L E+MLR F I ++L+ D
Sbjct: 223 ASQAEKNRAAALANNLQKGS-AGPMR-LYVGSLHFNITEDMLRGIFEPFGRIDSIQLMMD 280
Query: 483 KFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525
T S+G+ F+ F E A KALE NG E G+ ++V +
Sbjct: 281 SETGRSKGYGFITFSDAECAKKALEQLNG--FELAGRPMKVGH 321
Score = 82 (33.9 bits), Expect = 6.6e-06, Sum P(2) = 6.6e-06
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 288 TIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDF 335
T+ L+ + DL + + G +R VR+I +RNS S+G A+I+F
Sbjct: 150 TVFCMQLAARIRPRDLEEFFSAVGKVRDVRIISDRNSRRSKGIAYIEF 197
>TAIR|locus:504955752 [details] [associations]
symbol:AT3G13224 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441 HSSP:Q14103
KO:K12741 OMA:HAINGHH EMBL:AP002042 EMBL:AY080630 EMBL:AY123003
EMBL:AK221448 IPI:IPI00534312 RefSeq:NP_683559.2 UniGene:At.27259
ProteinModelPortal:Q9LHL2 SMR:Q9LHL2 IntAct:Q9LHL2 PRIDE:Q9LHL2
EnsemblPlants:AT3G13224.2 GeneID:820515 KEGG:ath:AT3G13224
TAIR:At3g13224 InParanoid:Q9LHL2 PhylomeDB:Q9LHL2
ProtClustDB:CLSN2918087 Genevestigator:Q9LHL2 Uniprot:Q9LHL2
Length = 358
Score = 98 (39.6 bits), Expect = 6.9e-06, Sum P(3) = 6.9e-06
Identities = 25/96 (26%), Positives = 52/96 (54%)
Query: 284 APSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARA 343
A G I + GL + TT + ++G + ++++R++G RGF FI F A +
Sbjct: 16 ASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITF----ADPS 71
Query: 344 MMDRIGDDGLVVDGRKLFFEYSSKPTGGSGGHYGQE 379
++D++ +D V++G+++ E G+GG+ ++
Sbjct: 72 VVDKVIEDTHVINGKQV--EIKRTIPKGAGGNQSKD 105
Score = 88 (36.0 bits), Expect = 6.9e-06, Sum P(3) = 6.9e-06
Identities = 24/78 (30%), Positives = 40/78 (51%)
Query: 435 IPLGKKGSDTGP--THVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFA 492
IP G G+ + T + V G+ E+ L+ F+K+ + + +++RD T+ SRGF
Sbjct: 94 IPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFG 153
Query: 493 FLHFHSVEDASKALEATN 510
F+ F S E + L N
Sbjct: 154 FVIFDSEEVVDELLSKGN 171
Score = 39 (18.8 bits), Expect = 6.9e-06, Sum P(3) = 6.9e-06
Identities = 11/39 (28%), Positives = 15/39 (38%)
Query: 607 GYYYDAASGFYYDGNTGLYYDGNSGIWYSYDQQTQQYIP 645
GY G Y G G Y+G G + + +Y P
Sbjct: 317 GYGGPGYGGAYESGGPGGSYEGAGGPYGRGYSSSSRYHP 355
>UNIPROTKB|E2QVA8 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01622 ProteinModelPortal:E2QVA8
Ensembl:ENSCAFT00000017824 Uniprot:E2QVA8
Length = 440
Score = 107 (42.7 bits), Expect = 7.0e-06, Sum P(3) = 7.0e-06
Identities = 34/95 (35%), Positives = 48/95 (50%)
Query: 439 KKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHS 498
+KGS +GP L V L E+MLR F I ++ L++D T S+G+ F+ F
Sbjct: 257 QKGS-SGPMR-LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSD 314
Query: 499 VEDASKALEATNGTTLEKNGQILRVAYAKSILGPG 533
E A +ALE NG E G+ +RV + L G
Sbjct: 315 SECARRALEQLNG--FELAGRPMRVGHVTERLDGG 347
Score = 79 (32.9 bits), Expect = 7.0e-06, Sum P(3) = 7.0e-06
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 288 TIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDF 335
T+ L+ + DL + G +R VR+I +RNS S+G A+++F
Sbjct: 168 TVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEF 215
Score = 42 (19.8 bits), Expect = 7.0e-06, Sum P(3) = 7.0e-06
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 197 SRDRERDKRCLSRER 211
SRDR+R +R SR R
Sbjct: 79 SRDRDRHRRRSSRSR 93
Score = 37 (18.1 bits), Expect = 2.2e-05, Sum P(3) = 2.2e-05
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 195 HESRDRERDKRCLSRER 211
H S R RD+R R R
Sbjct: 110 HSSESRSRDRRREDRVR 126
>RGD|1309595 [details] [associations]
symbol:Taf15 "TAF15 RNA polymerase II, TATA box binding protein
(TBP)-associated factor" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005622 "intracellular" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001876
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00641 PROSITE:PS01358
PROSITE:PS50102 PROSITE:PS50199 SMART:SM00360 SMART:SM00547
RGD:1309595 GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005622 EMBL:AC119615 IPI:IPI00950713
PRIDE:F1M8P1 Ensembl:ENSRNOT00000014438 ArrayExpress:F1M8P1
Uniprot:F1M8P1
Length = 554
Score = 138 (53.6 bits), Expect = 7.0e-06, Sum P(2) = 7.0e-06
Identities = 44/160 (27%), Positives = 77/160 (48%)
Query: 286 SGTIVVKGLSQKTTEEDLYQILAEWGPLRH--------VRVIKERNSGVSRGFAFIDFPS 337
+ TI V+GL + + + + + + G ++ + + ++++G +G A + F
Sbjct: 231 NNTIFVQGLGEGVSTDQVGEFFKQIGIIKTNKKTGKPMINLYTDKDTGKPKGEATVSFDD 290
Query: 338 VGAARAMMDRIGDDGLVVDGRKLFFEYSSK-PT----GGSGG-HYGQESAMGARHSNHKS 391
+A+A +D DG G + ++++ P GGSGG G+ G +
Sbjct: 291 PPSAKAAIDWF--DGKEFHGNIIKVSFATRRPEFMRGGGSGGGRRGRGGYRGRGGFQGRG 348
Query: 392 TIPC--DWMCT--ICGCVNFARRTSCFQCNEARTDDAPPA 427
P DW+C CG +NFARR SC QCNE R +D+ P+
Sbjct: 349 GDPKNGDWVCPNPSCGNMNFARRNSCNQCNEPRPEDSRPS 388
Score = 50 (22.7 bits), Expect = 7.0e-06, Sum P(2) = 7.0e-06
Identities = 40/148 (27%), Positives = 57/148 (38%)
Query: 6 YGLQ----QGWDNNSALEGYG----AIHEPNFRVGGSYDERRFLDERY-SRDNIYPRNAF 56
YG Q QG N + G G + + ++ SYD++ D+ S D N
Sbjct: 78 YGQQSYNNQGQQNTESSGGQGGRAPSYGQSDYGQQDSYDQQSGYDQHQGSYDE--QSNYQ 135
Query: 57 QRENYPPPPVGLWPQSRRRNYEEDYSLDRE--SRRHE--KPYIDSYHEMDAYCGHEIDSF 112
Q ++Y PQ R NY DR SR E + Y S G++ D
Sbjct: 136 QHDSYNQNQQSYHPQ--RENYSHHTQDDRRDMSRYGEDNRGYGGSQGGGRGRGGYDKDGR 193
Query: 113 -PEFDKF---RDGYRNIENYRDHGFERP 136
P R G++N +RD+G RP
Sbjct: 194 GPMTGSSGGDRGGFKNFGGHRDYG-PRP 220
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 102 (41.0 bits), Expect = 7.1e-06, Sum P(2) = 7.1e-06
Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 452 VRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNG 511
++ E D+E L+ F K P ++++ D+ + S+GF F+ F EDA KA++ NG
Sbjct: 195 IKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 512 TTLEKNGQILRVAYAK 527
L NG+ + V A+
Sbjct: 254 KEL--NGKQIYVGRAQ 267
Score = 98 (39.6 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 24/62 (38%), Positives = 36/62 (58%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
L V+ LD+ D+E LR EFS I +++ + S+GF F+ F S E+A+KA+
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEM 353
Query: 510 NG 511
NG
Sbjct: 354 NG 355
Score = 90 (36.7 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
+ ++ LD+ D + L FS I ++V D+ + S+G+ F+HF + E A +A+E
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 510 NGTTL 514
NG L
Sbjct: 159 NGMLL 163
Score = 89 (36.4 bits), Expect = 7.1e-06, Sum P(2) = 7.1e-06
Identities = 19/75 (25%), Positives = 42/75 (56%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
G I +K L + + LY + +G + +V+ + N S+G+ F+ F + AA ++
Sbjct: 99 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIE 156
Query: 347 RIGDDGLVVDGRKLF 361
++ +G++++ RK+F
Sbjct: 157 KM--NGMLLNDRKVF 169
Score = 86 (35.3 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 19/79 (24%), Positives = 43/79 (54%)
Query: 289 IVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRI 348
+ +K + +E L ++ ++GP V+V+ + SG S+GF F+ F A+ +D +
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 349 GDDGLVVDGRKLFFEYSSK 367
+G ++G++++ + K
Sbjct: 252 --NGKELNGKQIYVGRAQK 268
Score = 84 (34.6 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 21/83 (25%), Positives = 41/83 (49%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
P ++ V L TE LY+ + GP+ +RV ++ + S G+A+++F A
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERA 68
Query: 345 MDRIGDDGLVVDGRKLFFEYSSK 367
+D + D V+ G+ + +S +
Sbjct: 69 LDTMNFD--VIKGKPVRIMWSQR 89
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 102 (41.0 bits), Expect = 7.1e-06, Sum P(2) = 7.1e-06
Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 452 VRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNG 511
++ E D+E L+ F K P ++++ D+ + S+GF F+ F EDA KA++ NG
Sbjct: 195 IKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 512 TTLEKNGQILRVAYAK 527
L NG+ + V A+
Sbjct: 254 KEL--NGKQIYVGRAQ 267
Score = 98 (39.6 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 24/62 (38%), Positives = 36/62 (58%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
L V+ LD+ D+E LR EFS I +++ + S+GF F+ F S E+A+KA+
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEM 353
Query: 510 NG 511
NG
Sbjct: 354 NG 355
Score = 90 (36.7 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
+ ++ LD+ D + L FS I ++V D+ + S+G+ F+HF + E A +A+E
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 510 NGTTL 514
NG L
Sbjct: 159 NGMLL 163
Score = 89 (36.4 bits), Expect = 7.1e-06, Sum P(2) = 7.1e-06
Identities = 19/75 (25%), Positives = 42/75 (56%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
G I +K L + + LY + +G + +V+ + N S+G+ F+ F + AA ++
Sbjct: 99 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIE 156
Query: 347 RIGDDGLVVDGRKLF 361
++ +G++++ RK+F
Sbjct: 157 KM--NGMLLNDRKVF 169
Score = 86 (35.3 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 19/79 (24%), Positives = 43/79 (54%)
Query: 289 IVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRI 348
+ +K + +E L ++ ++GP V+V+ + SG S+GF F+ F A+ +D +
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 349 GDDGLVVDGRKLFFEYSSK 367
+G ++G++++ + K
Sbjct: 252 --NGKELNGKQIYVGRAQK 268
Score = 84 (34.6 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 21/83 (25%), Positives = 41/83 (49%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
P ++ V L TE LY+ + GP+ +RV ++ + S G+A+++F A
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERA 68
Query: 345 MDRIGDDGLVVDGRKLFFEYSSK 367
+D + D V+ G+ + +S +
Sbjct: 69 LDTMNFD--VIKGKPVRIMWSQR 89
>UNIPROTKB|F1MWR2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:DAAA02007272 IPI:IPI00717302 RefSeq:NP_001192513.1
UniGene:Bt.3914 ProteinModelPortal:F1MWR2
Ensembl:ENSBTAT00000016577 GeneID:506123 KEGG:bta:506123
NextBio:20867458 ArrayExpress:F1MWR2 Uniprot:F1MWR2
Length = 424
Score = 97 (39.2 bits), Expect = 7.2e-06, Sum P(3) = 7.2e-06
Identities = 29/93 (31%), Positives = 45/93 (48%)
Query: 440 KGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDL-RLVRDKFTHVSRGFAFLHFHS 498
K D G + + LD DE++L FS I +++RD T S+G+AF++F S
Sbjct: 94 KNLDVGAN--IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFAS 151
Query: 499 VEDASKALEATNGTTLEKNGQILRVAYAKSILG 531
+ + A+EA NG L + A+ K G
Sbjct: 152 FDASDAAIEAMNGQYLCNRPITVSYAFKKDSKG 184
Score = 86 (35.3 bits), Expect = 7.2e-06, Sum P(3) = 7.2e-06
Identities = 16/50 (32%), Positives = 32/50 (64%)
Query: 288 TIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPS 337
T+ V GL +K +E L+++ + GP+ + + K+R +G +G+ F++F S
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLS 63
Score = 45 (20.9 bits), Expect = 7.2e-06, Sum P(3) = 7.2e-06
Identities = 7/10 (70%), Positives = 7/10 (70%)
Query: 944 PFPPGVGGRG 953
P PPG GG G
Sbjct: 265 PMPPGAGGHG 274
>UNIPROTKB|E2R5T2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:AAEX03011046 EMBL:AAEX03011045 RefSeq:XP_540295.3
ProteinModelPortal:E2R5T2 Ensembl:ENSCAFT00000018450 GeneID:483177
KEGG:cfa:483177 NextBio:20857615 Uniprot:E2R5T2
Length = 424
Score = 97 (39.2 bits), Expect = 7.2e-06, Sum P(3) = 7.2e-06
Identities = 29/93 (31%), Positives = 45/93 (48%)
Query: 440 KGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDL-RLVRDKFTHVSRGFAFLHFHS 498
K D G + + LD DE++L FS I +++RD T S+G+AF++F S
Sbjct: 94 KNLDVGAN--IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFAS 151
Query: 499 VEDASKALEATNGTTLEKNGQILRVAYAKSILG 531
+ + A+EA NG L + A+ K G
Sbjct: 152 FDASDAAIEAMNGQYLCNRPITVSYAFKKDSKG 184
Score = 86 (35.3 bits), Expect = 7.2e-06, Sum P(3) = 7.2e-06
Identities = 16/50 (32%), Positives = 32/50 (64%)
Query: 288 TIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPS 337
T+ V GL +K +E L+++ + GP+ + + K+R +G +G+ F++F S
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLS 63
Score = 45 (20.9 bits), Expect = 7.2e-06, Sum P(3) = 7.2e-06
Identities = 7/10 (70%), Positives = 7/10 (70%)
Query: 944 PFPPGVGGRG 953
P PPG GG G
Sbjct: 265 PMPPGAGGHG 274
WARNING: HSPs involving 347 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.133 0.400 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1049 864 0.00084 122 3 11 23 0.46 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 597
No. of states in DFA: 626 (67 KB)
Total size of DFA: 448 KB (2211 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 73.98u 0.36s 74.34t Elapsed: 00:00:12
Total cpu time: 74.05u 0.37s 74.42t Elapsed: 00:00:12
Start: Mon May 20 17:34:22 2013 End: Mon May 20 17:34:34 2013
WARNINGS ISSUED: 2