BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043164
(1049 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A4IGK4|RBM5_XENTR RNA-binding protein 5 OS=Xenopus tropicalis GN=rbm5 PE=2 SV=1
Length = 838
Score = 118 bits (296), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 121/453 (26%), Positives = 193/453 (42%), Gaps = 118/453 (26%)
Query: 286 SGTIVVKGLSQKTTEEDLYQILAEW-GPL-RHVRVIKERNSGVSRGFAFIDFPSVGAARA 343
S TI+++GL E D+ +++ + GP VR++K R +G+SRGFAF++F + A
Sbjct: 102 SKTIMLRGLPININENDIRELVESFEGPQPADVRLMK-RKTGLSRGFAFVEFYHLQDATR 160
Query: 344 MMDRIGDDGLVVDGRKLFFEYSSKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICG 403
M+ LV+ G+ + YS N + DW+C CG
Sbjct: 161 WME-ANQKKLVIQGKTIAMHYS----------------------NPRPKFE-DWLCNKCG 196
Query: 404 CVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKGSDTG-PTHVLVVRGLDEYADEE 462
NF RR CF+C A+ + A SS+ SD+G + +++R + + +
Sbjct: 197 LYNFRRRLKCFRCGAAKAESDLEAPSGSSDAPQSTDYYSDSGYVSSAIILRNIGPHTVVD 256
Query: 463 MLRYEFSKHAP-----IKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEA--TNGTTLE 515
+ S AP + ++RL++DK T +RGFAF+ S +AS+ L+ T L+
Sbjct: 257 SI---LSALAPYVSLVVSNIRLIKDKQTQQNRGFAFVQLPSTLEASQLLQILQTLHPPLK 313
Query: 516 KNGQILRVAYAKS-----ILGPGSGMSA-SSQSSSLAAAAIEAAAFSQQ----------- 558
+G+ + V +AKS +L G +SA S S+++AAA + +QQ
Sbjct: 314 IDGKTVGVDFAKSARKDLVLPDGHRVSAFSVASTAIAAAQWSSTQQAQQSGEGGEYAYLQ 373
Query: 559 -----YDAVGWAPKEYNPDDKQPTRGQEQ----RSDG----------------DMVQKDG 593
Y G ++Y P + T EQ +++G M Q+ G
Sbjct: 374 PGQEGYANYGQCSQDYQPFYQAQTGAAEQSTAPQAEGSAPVPATTSAVVCQSPQMYQQPG 433
Query: 594 LALQSG------------------------------FVWDEASGYYYDAASGFYYDGNTG 623
QSG + + S Y YD +SG+YYD TG
Sbjct: 434 SPTQSGTSTAANTTPASTTSTTEEAAPPNAVIPGVKYSVPDTSTYQYDESSGYYYDPQTG 493
Query: 624 LYYDGNSGIWYS--------YDQQTQQYIPCTD 648
LYYD NS +Y+ +D + Q Y+P D
Sbjct: 494 LYYDPNSQYYYNSLTQQYLYWDGEKQTYLPAAD 526
Score = 83.6 bits (205), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 79/168 (47%), Gaps = 37/168 (22%)
Query: 881 RFSEMPLPPATQKEQPQTTYRDRAAERRSLYGSSFSAGDDLPDVGSGDSNRDFALKKGSV 940
+ SE L KE+ + YRDRAAERR YG
Sbjct: 707 KMSEQELEALELKER-EAKYRDRAAERREKYG---------------------------- 737
Query: 941 DSMPFPPGVGGRGFTADSVQSYEVITADKAIDENNVGNRMLRSMGWHEGLGLGKDGSGMI 1000
+P PP + F +V +YE T D ID +N+GN+ML++MGW EG GLG+ G+
Sbjct: 738 --IPEPPEPKRKRFDP-TVVNYEQPTKD-GIDNSNIGNKMLQAMGWKEGSGLGRKSQGIT 793
Query: 1001 EPVQAQAMDSRAGLGSQQKKVDPSLEVQAGDSYKTLIHKKALARFREM 1048
P+QAQ AGLG++ S V DSYK + K ARF EM
Sbjct: 794 APIQAQVRMRGAGLGAK----GSSYGVNTSDSYKDAVRKAMFARFSEM 837
>sp|Q6DDU9|RBM5B_XENLA RNA-binding protein 5-B OS=Xenopus laevis GN=rbm5-b PE=2 SV=1
Length = 749
Score = 118 bits (296), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 125/465 (26%), Positives = 199/465 (42%), Gaps = 120/465 (25%)
Query: 286 SGTIVVKGLSQKTTEEDLYQILAEW-GPL-RHVRVIKERNSGVSRGFAFIDFPSVGAARA 343
S TI+++GL E D+ +++ + GP VR++K R +G+SRGFAF++F + A
Sbjct: 101 SKTIMLRGLPININENDIRELVESFEGPQPADVRLMK-RKTGLSRGFAFVEFYHLQDATR 159
Query: 344 MMDRIGDDGLVVDGRKLFFEYSSKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICG 403
M+ LV+ G+ + YS N + DW+C CG
Sbjct: 160 WME-ANQKKLVIQGKTIAMHYS----------------------NPRPKFE-DWLCNKCG 195
Query: 404 CVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKGSDTG-PTHVLVVRGLDEYADEE 462
NF RR CF+C A+ + A SS SD+G + +++R + + +
Sbjct: 196 LYNFRRRLKCFRCGAAKAESDMEAPSGSSETPQSADYYSDSGYVSSAIILRNIGPHTVVD 255
Query: 463 MLRYEFSKHAP-----IKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEA--TNGTTLE 515
+ S AP + ++RL++DK T +RGFAF+ S +AS+ L+ T L+
Sbjct: 256 SI---LSALAPYVSLVVSNIRLIKDKQTQQNRGFAFVQLPSALEASQLLQILQTLHPPLK 312
Query: 516 KNGQILRVAYAKS-----ILGPGSGMSASSQSSSLAAAAIEAA-------------AFSQ 557
+G+ + V +AKS +L G +SA S +S+ AAA +A A+ Q
Sbjct: 313 IDGKTIGVDFAKSARKDLVLPDGHRVSAFSVASTAIAAAQWSATQPAQQSGEAGDYAYLQ 372
Query: 558 Q----YDAVGWAPKEYNPDDKQPTRGQEQ----RSDG---------------DMVQKDGL 594
Q G ++Y P + T +Q +S+G M Q+ G
Sbjct: 373 QGQEGNSNFGQCSQDYQPFYQTQTAAVDQDTAPQSEGSPVPATTSAVVCQSPQMYQQPGS 432
Query: 595 ALQSG-----------------------------FVWDEASGYYYDAASGFYYDGNTGLY 625
QSG + + S Y YD +SG+YYD TGLY
Sbjct: 433 PTQSGTSTAASTTPASTTSTEEATTPTAIVPGVKYSVPDTSTYQYDESSGYYYDPQTGLY 492
Query: 626 YDGNSGIWYS--------YDQQTQQYIPCTDQNDNKTSGNGSEPS 662
YD NS +Y+ +D + Q Y+P D T +G++P+
Sbjct: 493 YDPNSQYYYNSLTQQYLYWDGEKQTYLPAAD----GTGQSGAQPN 533
Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 77/164 (46%), Gaps = 36/164 (21%)
Query: 885 MPLPPATQKEQPQTTYRDRAAERRSLYGSSFSAGDDLPDVGSGDSNRDFALKKGSVDSMP 944
M + +++ P YRDRAAERR YG +P
Sbjct: 621 MMMVNTEEEKPPNAKYRDRAAERREKYG------------------------------IP 650
Query: 945 FPPGVGGRGFTADSVQSYEVITADKAIDENNVGNRMLRSMGWHEGLGLGKDGSGMIEPVQ 1004
PP + F +V +YE T D ID +N+GN+ML++MGW EG GLG+ G+ P+Q
Sbjct: 651 EPPEPKRKRFDP-TVVNYEQPTKD-GIDNSNIGNKMLQAMGWKEGSGLGRKSQGITAPIQ 708
Query: 1005 AQAMDSRAGLGSQQKKVDPSLEVQAGDSYKTLIHKKALARFREM 1048
AQ AGLG++ S V DSYK + K ARF EM
Sbjct: 709 AQVRMRGAGLGAKGS----SYGVNTSDSYKDAVKKAMFARFSEM 748
>sp|P52756|RBM5_HUMAN RNA-binding protein 5 OS=Homo sapiens GN=RBM5 PE=1 SV=2
Length = 815
Score = 103 bits (258), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 91/318 (28%), Positives = 149/318 (46%), Gaps = 56/318 (17%)
Query: 255 EDSY-DDGRYERIEKRRDREERRQREHYAVAPSGTIVVKGLSQKTTEEDLYQILAEW-GP 312
ED Y DG Y + R D + R+ S TI+++GL TE D+ +++ + GP
Sbjct: 73 EDGYHSDGDYGEHDYRHDISDERE--------SKTIMLRGLPITITESDIREMMESFEGP 124
Query: 313 L-RHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYSSKPTGG 371
VR++K R +GVSRGFAF++F + A + M+ LV+ G+ + YS
Sbjct: 125 QPADVRLMK-RKTGVSRGFAFVEFYHLQDATSWME-ANQKKLVIQGKHIAMHYS------ 176
Query: 372 SGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTD---DAPPAE 428
N + DW+C C NF +R CF+C + D + PP
Sbjct: 177 ----------------NPRPKFE-DWLCNKCCLNNFRKRLKCFRCGADKFDSEQEVPPGT 219
Query: 429 MNSSNPIPLGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHA--PIKDLRLVRDKFTH 486
S + DT +++R + + + + S +A + ++RL++DK T
Sbjct: 220 TESVQSVDYY---CDT-----IILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQ 271
Query: 487 VSRGFAFLHFHSVEDASKALEATNGT--TLEKNGQILRVAYAKS-----ILGPGSGMSAS 539
+RGFAF+ S DAS+ L+ L+ +G+ + V +AKS +L G+ +SA
Sbjct: 272 QNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAKSARKDLVLSDGNRVSAF 331
Query: 540 SQSSSLAAAAIEAAAFSQ 557
S +S+ AAA ++ SQ
Sbjct: 332 SVASTAIAAAQWSSTQSQ 349
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 80/169 (47%), Gaps = 38/169 (22%)
Query: 881 RFSEMPLPPATQKEQPQTTYRDRAAERRSLYGSSFSAGDDLPDVGSGDSNRDFALKKGSV 940
R SE L +E+ + YRDRAAERR YG
Sbjct: 683 RLSEQELEALELRER-EMKYRDRAAERREKYG---------------------------- 713
Query: 941 DSMPFPPGVG-GRGFTADSVQSYEVITADKAIDENNVGNRMLRSMGWHEGLGLGKDGSGM 999
+P PP + F A +V +YE T D ID +N+GN+ML++MGW EG GLG+ G+
Sbjct: 714 --IPEPPEPKRKKQFDAGTV-NYEQPTKD-GIDHSNIGNKMLQAMGWREGSGLGRKCQGI 769
Query: 1000 IEPVQAQAMDSRAGLGSQQKKVDPSLEVQAGDSYKTLIHKKALARFREM 1048
P++AQ AGLG++ + + DSYK + K ARF EM
Sbjct: 770 TAPIEAQVRLKGAGLGAK----GSAYGLSGADSYKDAVRKAMFARFTEM 814
>sp|Q91YE7|RBM5_MOUSE RNA-binding protein 5 OS=Mus musculus GN=Rbm5 PE=1 SV=1
Length = 815
Score = 103 bits (258), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 91/318 (28%), Positives = 150/318 (47%), Gaps = 56/318 (17%)
Query: 255 EDSY-DDGRYERIEKRRDREERRQREHYAVAPSGTIVVKGLSQKTTEEDLYQILAEW-GP 312
ED Y DG Y + R D + R+ S TI+++GL TE D+ +++ + GP
Sbjct: 73 EDGYHSDGDYGEHDYRHDISDERE--------SKTIMLRGLPITITESDIREMMESFEGP 124
Query: 313 L-RHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYSSKPTGG 371
VR++K R +GVSRGFAF++F + A + M+ LV+ G+ + YS
Sbjct: 125 QPADVRLMK-RKTGVSRGFAFVEFYHLQDATSWME-ANQKKLVIQGKHIAMHYS------ 176
Query: 372 SGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTD---DAPPAE 428
N + DW+C C NF +R CF+C + D + PP
Sbjct: 177 ----------------NPRPKFE-DWLCNKCCLNNFRKRLKCFRCGADKFDSEQEVPPGT 219
Query: 429 MNSSNPIPLGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHA--PIKDLRLVRDKFTH 486
S+ + DT +++R + + + + S +A + ++RL++DK T
Sbjct: 220 TESAQSVDYY---CDT-----IILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQ 271
Query: 487 VSRGFAFLHFHSVEDASKALEATNGT--TLEKNGQILRVAYAKS-----ILGPGSGMSAS 539
+RGFAF+ S DAS+ L+ L+ +G+ + V +AKS +L G+ +SA
Sbjct: 272 QNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAKSARKDLVLPDGNRVSAF 331
Query: 540 SQSSSLAAAAIEAAAFSQ 557
S +S+ AAA ++ SQ
Sbjct: 332 SVASTAIAAAQWSSTQSQ 349
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 80/169 (47%), Gaps = 38/169 (22%)
Query: 881 RFSEMPLPPATQKEQPQTTYRDRAAERRSLYGSSFSAGDDLPDVGSGDSNRDFALKKGSV 940
R SE L +E+ + YRDRAAERR YG
Sbjct: 683 RLSEQELEALELRER-EMKYRDRAAERREKYG---------------------------- 713
Query: 941 DSMPFPPGVG-GRGFTADSVQSYEVITADKAIDENNVGNRMLRSMGWHEGLGLGKDGSGM 999
+P PP + F A +V +YE T D ID +N+GN+ML++MGW EG GLG+ G+
Sbjct: 714 --IPEPPEPKRKKQFDAGTV-NYEQPTKD-GIDHSNIGNKMLQAMGWREGSGLGRKCQGI 769
Query: 1000 IEPVQAQAMDSRAGLGSQQKKVDPSLEVQAGDSYKTLIHKKALARFREM 1048
P++AQ AGLG++ + + DSYK + K ARF EM
Sbjct: 770 TAPIEAQVRLKGAGLGAK----GSAYGLSGADSYKDAVRKAMFARFTEM 814
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 37/59 (62%)
Query: 598 SGFVWDEASGYYYDAASGFYYDGNTGLYYDGNSGIWYSYDQQTQQYIPCTDQNDNKTSG 656
S + +DE+SGYYYD +G YYD N+ YY+ + + +D + + Y+P + + N+ +G
Sbjct: 460 STYQYDESSGYYYDPTTGLYYDPNSQYYYNSLTQQYLYWDGEKETYVPAAEASSNQQTG 518
>sp|B2GV05|RBM5_RAT RNA-binding protein 5 OS=Rattus norvegicus GN=Rbm5 PE=2 SV=1
Length = 815
Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 91/318 (28%), Positives = 149/318 (46%), Gaps = 56/318 (17%)
Query: 255 EDSY-DDGRYERIEKRRDREERRQREHYAVAPSGTIVVKGLSQKTTEEDLYQILAEW-GP 312
ED Y DG Y + R D + R+ S TI+++GL TE D+ +++ + GP
Sbjct: 73 EDGYHSDGDYGEHDYRHDISDERE--------SKTIMLRGLPITITESDIREMMESFEGP 124
Query: 313 L-RHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYSSKPTGG 371
VR++K R +GVSRGFAF++F + A + M+ LV+ G+ + YS
Sbjct: 125 QPADVRLMK-RKTGVSRGFAFVEFYHLQDATSWME-ANQKKLVIQGKHIAMHYS------ 176
Query: 372 SGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTD---DAPPAE 428
N + DW+C C NF +R CF+C + D + PP
Sbjct: 177 ----------------NPRPKFE-DWLCNKCCLNNFRKRLKCFRCGADKFDSEQEVPPGT 219
Query: 429 MNSSNPIPLGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHA--PIKDLRLVRDKFTH 486
S + DT +++R + + + + S +A + ++RL++DK T
Sbjct: 220 TESVQSVDYY---CDT-----IILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQ 271
Query: 487 VSRGFAFLHFHSVEDASKALEATNGT--TLEKNGQILRVAYAKS-----ILGPGSGMSAS 539
+RGFAF+ S DAS+ L+ L+ +G+ + V +AKS +L G+ +SA
Sbjct: 272 QNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAKSARKDLVLPDGNRVSAF 331
Query: 540 SQSSSLAAAAIEAAAFSQ 557
S +S+ AAA ++ SQ
Sbjct: 332 SVASTAIAAAQWSSTQSQ 349
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 80/169 (47%), Gaps = 38/169 (22%)
Query: 881 RFSEMPLPPATQKEQPQTTYRDRAAERRSLYGSSFSAGDDLPDVGSGDSNRDFALKKGSV 940
R SE L +E+ + YRDRAAERR YG
Sbjct: 683 RLSEQELEALELRER-EMKYRDRAAERREKYG---------------------------- 713
Query: 941 DSMPFPPGVG-GRGFTADSVQSYEVITADKAIDENNVGNRMLRSMGWHEGLGLGKDGSGM 999
+P PP + F A +V +YE T D ID +N+GN+ML++MGW EG GLG+ G+
Sbjct: 714 --IPEPPEPKRKKQFDAGTV-NYEQPTKD-GIDHSNIGNKMLQAMGWREGSGLGRKCQGI 769
Query: 1000 IEPVQAQAMDSRAGLGSQQKKVDPSLEVQAGDSYKTLIHKKALARFREM 1048
P++AQ AGLG++ + + DSYK + K ARF EM
Sbjct: 770 TAPIEAQVRLKGAGLGAK----GSAYGLSGADSYKDAVRKAMFARFTEM 814
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 37/59 (62%)
Query: 598 SGFVWDEASGYYYDAASGFYYDGNTGLYYDGNSGIWYSYDQQTQQYIPCTDQNDNKTSG 656
S + +DE+SGYYYD +G YYD N+ YY+ + + +D + + Y+P + + N+ +G
Sbjct: 460 STYQYDESSGYYYDPTTGLYYDPNSQYYYNSLTQQYLYWDGEKETYVPAAESSSNQQAG 518
>sp|Q1RMU5|RBM5_BOVIN RNA-binding protein 5 OS=Bos taurus GN=RBM5 PE=2 SV=1
Length = 815
Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 91/318 (28%), Positives = 149/318 (46%), Gaps = 56/318 (17%)
Query: 255 EDSY-DDGRYERIEKRRDREERRQREHYAVAPSGTIVVKGLSQKTTEEDLYQILAEW-GP 312
ED Y DG Y + R D + R+ S TI+++GL TE D+ +++ + GP
Sbjct: 73 EDGYHSDGDYGEHDYRHDISDERE--------SKTIMLRGLPITITESDIREMMESFEGP 124
Query: 313 L-RHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYSSKPTGG 371
VR++K R +GVSRGFAF++F + A + M+ LV+ G+ + YS
Sbjct: 125 QPADVRLMK-RKTGVSRGFAFVEFYHLQDATSWME-ANQKKLVIQGKHIAMHYS------ 176
Query: 372 SGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTD---DAPPAE 428
N + DW+C C NF +R CF+C + D + PP
Sbjct: 177 ----------------NPRPKFE-DWLCNKCCLNNFRKRLKCFRCGADKFDSEQEVPPGT 219
Query: 429 MNSSNPIPLGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHA--PIKDLRLVRDKFTH 486
S + DT +++R + + + + S +A + ++RL++DK T
Sbjct: 220 TESVQSVDYY---CDT-----IILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQ 271
Query: 487 VSRGFAFLHFHSVEDASKALEATNGT--TLEKNGQILRVAYAKS-----ILGPGSGMSAS 539
+RGFAF+ S DAS+ L+ L+ +G+ + V +AKS +L G+ +SA
Sbjct: 272 QNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAKSARKDLVLPDGNRVSAF 331
Query: 540 SQSSSLAAAAIEAAAFSQ 557
S +S+ AAA ++ SQ
Sbjct: 332 SVASTAIAAAQWSSTQSQ 349
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 80/169 (47%), Gaps = 38/169 (22%)
Query: 881 RFSEMPLPPATQKEQPQTTYRDRAAERRSLYGSSFSAGDDLPDVGSGDSNRDFALKKGSV 940
R SE L +E+ + YRDRAAERR YG
Sbjct: 683 RLSEQELEALELRER-EMKYRDRAAERREKYG---------------------------- 713
Query: 941 DSMPFPPGVG-GRGFTADSVQSYEVITADKAIDENNVGNRMLRSMGWHEGLGLGKDGSGM 999
+P PP + F A +V +YE T D ID +N+GN+ML++MGW EG GLG+ G+
Sbjct: 714 --IPEPPEPKRKKQFDAGTV-NYEQPTKD-GIDHSNIGNKMLQAMGWREGSGLGRKCQGI 769
Query: 1000 IEPVQAQAMDSRAGLGSQQKKVDPSLEVQAGDSYKTLIHKKALARFREM 1048
P++AQ AGLG++ + + DSYK + K ARF EM
Sbjct: 770 TAPIEAQVRLKGAGLGAK----GSAYGLSGADSYKDAVRKAMFARFTEM 814
>sp|P98175|RBM10_HUMAN RNA-binding protein 10 OS=Homo sapiens GN=RBM10 PE=1 SV=3
Length = 930
Score = 100 bits (250), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 81/330 (24%), Positives = 142/330 (43%), Gaps = 65/330 (19%)
Query: 286 SGTIVVKGLSQKTTEEDLYQILAEWG-PLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
S ++++ L Q TE+D+ L G R VR+++ ++SG SRGFAF++F + A
Sbjct: 128 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRW 187
Query: 345 MDRIGDDGLVVDGRKLFFEYSSKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGC 404
M+ L + G+K+ YS + K I DW+C CG
Sbjct: 188 ME-ANQHSLNILGQKVSMHYS----------------------DPKPKINEDWLCNKCGV 224
Query: 405 VNFARRTSCFQCNEARTD---DAPPAEMNSSNPIPLGKKGSDTG---------------- 445
NF RR CF+C +++ P +PLG + G
Sbjct: 225 QNFKRREKCFKCGVPKSEAEQKLPLGTRLDQQTLPLGGRELSQGLLPLPQPYQAQGVLAS 284
Query: 446 -------------PTHVLVVRGLDEYADEEMLRYEFSKHAPI--KDLRLVRDKFTHVSRG 490
+++R L+ ++ + + + +A + ++R+++DK T ++RG
Sbjct: 285 QALSQGSEPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRG 344
Query: 491 FAFLHFHSVEDASKALEATNGT--TLEKNGQILRVAYAKS-----ILGPGSGMSASSQSS 543
FAF+ ++ +A++ L+ L +G+ + V +AK GS +SA+S +S
Sbjct: 345 FAFIQLSTIVEAAQLLQILQALHPPLTIDGKTINVEFAKGSKRDMASNEGSRISAASVAS 404
Query: 544 SLAAAAIEAAAFSQQYDAVGWAPKEYNPDD 573
+ AAA A + + Q WA E P D
Sbjct: 405 TAIAAAQWAISQASQGGEGTWATSEEPPVD 434
Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 77/168 (45%), Gaps = 37/168 (22%)
Query: 882 FSEMPLPPATQKEQPQTTYRDRAAERRSLYGSSFSAGDDLPDVGSGDSNRDFALKKGSVD 941
SE L + + Q YRDRAAERR YG
Sbjct: 796 LSENELEALEKNDMEQMKYRDRAAERREKYG----------------------------- 826
Query: 942 SMPFPPGVGGRGFTADSVQS--YEVITADKAIDENNVGNRMLRSMGWHEGLGLGKDGSGM 999
+P PP R + S S +E T D + +N+G+RML++MGW EG GLG+ G+
Sbjct: 827 -IPEPPEPKRRKYGGISTASVDFEQPTRD-GLGSDNIGSRMLQAMGWKEGSGLGRKKQGI 884
Query: 1000 IEPVQAQAMDSRAGLGSQQKKVDPSLEVQAGDSYKTLIHKKALARFRE 1047
+ P++AQ +GLG++ S V + +SYK +HK + RF E
Sbjct: 885 VTPIEAQTRVRGSGLGAR----GSSYGVTSTESYKETLHKTMVTRFNE 928
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%)
Query: 598 SGFVWDEASGYYYDAASGFYYDGNTGLYYDGNSGIWYSYDQQTQQYIPCTDQN 650
S + +DE SGYYYD +G YYD N+ YY+ S + +D + + Y+P +Q+
Sbjct: 570 STYQYDETSGYYYDPQTGLYYDPNSQYYYNAQSQQYLYWDGERRTYVPALEQS 622
>sp|Q99KG3|RBM10_MOUSE RNA-binding protein 10 OS=Mus musculus GN=Rbm10 PE=1 SV=1
Length = 930
Score = 100 bits (249), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 80/330 (24%), Positives = 142/330 (43%), Gaps = 65/330 (19%)
Query: 286 SGTIVVKGLSQKTTEEDLYQILAEWG-PLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
S ++++ L Q TE+D+ L G R VR+++ ++SG SRGFAF++F + A
Sbjct: 128 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRW 187
Query: 345 MDRIGDDGLVVDGRKLFFEYSSKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGC 404
M+ L + G+K+ YS + K I DW+C CG
Sbjct: 188 ME-ANQHSLNILGQKVSMHYS----------------------DPKPKINEDWLCNKCGV 224
Query: 405 VNFARRTSCFQCNEARTD---DAPPAEMNSSNPIPLGKKGSDTG---------------- 445
NF RR CF+C +++ P +PLG + G
Sbjct: 225 QNFKRREKCFKCGVPKSEAEQKLPLGTRLDQQALPLGGRELSQGLLPLPQPYQAQGVLTS 284
Query: 446 -------------PTHVLVVRGLDEYADEEMLRYEFSKHAPI--KDLRLVRDKFTHVSRG 490
+++R L+ ++ + + + +A + ++R+++DK T ++RG
Sbjct: 285 QALSQGSEPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRG 344
Query: 491 FAFLHFHSVEDASKALEATNGT--TLEKNGQILRVAYAKS-----ILGPGSGMSASSQSS 543
FAF+ ++ +A++ L+ L +G+ + V +AK GS ++A+S +S
Sbjct: 345 FAFIQLSTIVEAAQLLQILQALHPPLTIDGKTINVEFAKGSKRDMASNEGSRINAASVAS 404
Query: 544 SLAAAAIEAAAFSQQYDAVGWAPKEYNPDD 573
+ AAA A + + Q WA E P D
Sbjct: 405 TAIAAAQWAISQASQGGESAWAAPEEPPVD 434
Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 77/168 (45%), Gaps = 37/168 (22%)
Query: 882 FSEMPLPPATQKEQPQTTYRDRAAERRSLYGSSFSAGDDLPDVGSGDSNRDFALKKGSVD 941
SE L + + Q YRDRAAERR YG
Sbjct: 796 LSENELEALEKNDMEQMKYRDRAAERREKYG----------------------------- 826
Query: 942 SMPFPPGVGGRGFTADSVQS--YEVITADKAIDENNVGNRMLRSMGWHEGLGLGKDGSGM 999
+P PP R + S S +E T D + +N+G+RML++MGW EG GLG+ G+
Sbjct: 827 -IPEPPEPKRRKYGGISTASVDFEQPTRD-GLGSDNIGSRMLQAMGWKEGSGLGRKKQGI 884
Query: 1000 IEPVQAQAMDSRAGLGSQQKKVDPSLEVQAGDSYKTLIHKKALARFRE 1047
+ P++AQ +GLG++ S V + +SYK +HK + RF E
Sbjct: 885 VTPIEAQTRVRGSGLGAR----GSSYGVTSTESYKETLHKTMVTRFNE 928
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 33/53 (62%)
Query: 598 SGFVWDEASGYYYDAASGFYYDGNTGLYYDGNSGIWYSYDQQTQQYIPCTDQN 650
S + +DE SGYYYD +G YYD N+ YY+ S + +D + + YIP +Q+
Sbjct: 570 STYQYDETSGYYYDPQTGLYYDPNSQYYYNAQSQQYLYWDGERRTYIPALEQS 622
>sp|A0JMV4|RBM5A_XENLA RNA-binding protein 5-A OS=Xenopus laevis GN=rbm5-a PE=2 SV=1
Length = 833
Score = 100 bits (248), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 81/279 (29%), Positives = 135/279 (48%), Gaps = 43/279 (15%)
Query: 286 SGTIVVKGLSQKTTEEDLYQILAEW-GPL-RHVRVIKERNSGVSRGFAFIDFPSVGAARA 343
S TI+++GL E D+ +++ + GP VR++K R +G+SRGFAF++F + + +
Sbjct: 101 SKTIMLRGLPININENDIRELVESFEGPQPADVRLMK-RKTGLSRGFAFVEFYHLQDSTS 159
Query: 344 MMDRIGDDGLVVDGRKLFFEYSSKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICG 403
M+ LV+ G+ + YS N + DW+C CG
Sbjct: 160 WME-ANQKKLVIQGKTIAMHYS----------------------NPRPKFE-DWLCNKCG 195
Query: 404 CVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKGSDTG-PTHVLVVRGLDEYADEE 462
NF RR CF+C A+ + A SS SD+G + +++R + + +
Sbjct: 196 LYNFRRRLKCFRCGAAKAESDMEAPSGSSEAPQSADYYSDSGYVSSAIILRNIGPHTVVD 255
Query: 463 MLRYEFSKHAP-----IKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEA--TNGTTLE 515
+ S AP + ++RL++DK T +RGFAF+ S +AS+ L+ T L+
Sbjct: 256 SI---LSALAPYVSLVVSNIRLIKDKQTQQNRGFAFVQLPSALEASQLLQILQTLHPPLK 312
Query: 516 KNGQILRVAYAKS-----ILGPGSGMSASSQSSSLAAAA 549
+G+ + V +AKS +L G +SA S +S+ AAA
Sbjct: 313 IDGKTIGVDFAKSARKDLVLPDGHRVSAFSVASTAIAAA 351
Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 74/152 (48%), Gaps = 36/152 (23%)
Query: 897 QTTYRDRAAERRSLYGSSFSAGDDLPDVGSGDSNRDFALKKGSVDSMPFPPGVGGRGFTA 956
++ YRDRAAERR YG +P PP + F A
Sbjct: 717 ESKYRDRAAERRVKYG------------------------------IPEPPEPKRKRF-A 745
Query: 957 DSVQSYEVITADKAIDENNVGNRMLRSMGWHEGLGLGKDGSGMIEPVQAQAMDSRAGLGS 1016
+V +YE T D ID +N+GN+ML++MGW EG GLG+ G+ P+QAQ AGLG+
Sbjct: 746 PTVVNYEQPTKD-GIDNSNIGNKMLQAMGWKEGSGLGRKSQGITAPIQAQVRMRGAGLGA 804
Query: 1017 QQKKVDPSLEVQAGDSYKTLIHKKALARFREM 1048
+ S V DSYK + K ARF EM
Sbjct: 805 K----GSSYGVNTSDSYKDAVRKAMFARFSEM 832
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 598 SGFVWDEASGYYYDAASGFYYDGNTGLYYDGNSGIWYSYDQQTQQYIPCTD-QNDNKTSG 656
S + +DE+SGYYYD +G YYD N+ YY+ + + +D + Q Y+P D + T
Sbjct: 475 STYQYDESSGYYYDPQTGLYYDPNSQYYYNSLTQQYLYWDGEKQTYLPAADGAGQSGTQP 534
Query: 657 NGSEP 661
NG+ P
Sbjct: 535 NGANP 539
>sp|P70501|RBM10_RAT RNA-binding protein 10 OS=Rattus norvegicus GN=Rbm10 PE=2 SV=1
Length = 852
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/301 (23%), Positives = 128/301 (42%), Gaps = 64/301 (21%)
Query: 314 RHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYSSKPTGGSG 373
R VR+++ ++SG SRGFAF++F + A M+ L + G+K+ YS
Sbjct: 80 REVRLMRNKSSGQSRGFAFVEFSHLQDATRWME-ANQHSLNILGQKVSMHYS-------- 130
Query: 374 GHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTD---DAPPAEMN 430
+ K I DW+C CG NF RR CF+C +++ P
Sbjct: 131 --------------DPKPKINEDWLCNKCGVQNFKRREKCFKCGVPKSEAEQKLPLGTRL 176
Query: 431 SSNPIPLGKKGSDTG-----------------------------PTHVLVVRGLDEYADE 461
+PLG + G +++R L+ ++
Sbjct: 177 DQQALPLGGRELSQGLLPLPQPYQAQGVLTSQALSQGSEPSSENANDTIILRNLNPHSTM 236
Query: 462 EMLRYEFSKHAPI--KDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGT--TLEKN 517
+ + + +A + ++R+++DK T ++RGFAF+ ++ +A++ L+ L +
Sbjct: 237 DSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTIVEAAQLLQILQALHPPLTID 296
Query: 518 GQILRVAYAKS-----ILGPGSGMSASSQSSSLAAAAIEAAAFSQQYDAVGWAPKEYNPD 572
G+ + V +AK GS ++A+S +S+ AAA A + + Q WA E P
Sbjct: 297 GKTINVEFAKGSKRDMASNEGSRINAASVASTAIAAAQWAISQASQGGESTWAAPEEPPV 356
Query: 573 D 573
D
Sbjct: 357 D 357
Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 77/168 (45%), Gaps = 37/168 (22%)
Query: 882 FSEMPLPPATQKEQPQTTYRDRAAERRSLYGSSFSAGDDLPDVGSGDSNRDFALKKGSVD 941
SE L + + Q YRDRAAERR YG
Sbjct: 718 LSENELEALEKNDMEQMKYRDRAAERREKYG----------------------------- 748
Query: 942 SMPFPPGVGGRGFTADSVQS--YEVITADKAIDENNVGNRMLRSMGWHEGLGLGKDGSGM 999
+P PP R + S S +E T D + +N+G+RML++MGW EG GLG+ G+
Sbjct: 749 -IPEPPEPKRRKYGGISTASVDFEQPTRD-GLGSDNIGSRMLQAMGWKEGSGLGRKKQGI 806
Query: 1000 IEPVQAQAMDSRAGLGSQQKKVDPSLEVQAGDSYKTLIHKKALARFRE 1047
+ P++AQ +GLG++ S V + +SYK +HK + RF E
Sbjct: 807 VTPIEAQTRVRGSGLGAR----GSSYGVTSTESYKETLHKTMVTRFNE 850
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 33/53 (62%)
Query: 598 SGFVWDEASGYYYDAASGFYYDGNTGLYYDGNSGIWYSYDQQTQQYIPCTDQN 650
S + +DE SGYYYD +G YYD N+ YY+ S + +D + + YIP +Q+
Sbjct: 492 STYQYDETSGYYYDPQTGLYYDPNSQYYYNAQSQQYLYWDGERRTYIPALEQS 544
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 288 TIVVKGLSQKTTEEDLYQILAEWGPLR--HVRVIKERNSGVSRGFAFIDFPSVGAARAMM 345
TI+++ L+ +T + + LA + L +VRVIK++ + ++RGFAFI ++ A ++
Sbjct: 224 TIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTIVEAAQLL 283
Query: 346 DRIG--DDGLVVDGRKLFFEYS 365
+ L +DG+ + E++
Sbjct: 284 QILQALHPPLTIDGKTINVEFA 305
>sp|P87143|YDMD_SCHPO Uncharacterized RNA-binding protein C57A7.13 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC57A7.13 PE=4 SV=1
Length = 565
Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 105/239 (43%), Gaps = 28/239 (11%)
Query: 270 RDREERRQREHYAVAPSGTIVVKGLSQKTTEEDL-YQILAEWGPLRHVRVIKERNSGVSR 328
RDR R H V P+ I+++GL+ + EE + + A + V +I+E+ + SR
Sbjct: 56 RDRNSPLSR-HIGV-PNQEIILQGLTPEILEEHIELALYATGAKVSTVTLIREKETQKSR 113
Query: 329 GFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYSSKPTGGSGGHYGQESAMGARHSN 388
FAF F S+ ++ M+ LV+DG + +S +E G
Sbjct: 114 CFAFAKFVSLQDSKDWMEA-NFPTLVIDGIDVSVRFSRA---------AREQIEG----- 158
Query: 389 HKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKGSDTGPTH 448
W C C +N++ R SCF+C R + A A N G P+
Sbjct: 159 --------WCCQNCDILNYSYRESCFKCRVPR-NQASIAIGNHKISKRNGDMDVSDVPSV 209
Query: 449 VLVVRGLDEYADEEMLRYEFSK-HAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKAL 506
L++R LD EE L SK ++ + ++R KF G+A L F V++++KAL
Sbjct: 210 YLILRNLDRSLSEETLWKGLSKLEIDVQRVFMIRYKFNDAFCGYAILEFKDVDESAKAL 268
Score = 42.4 bits (98), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 31/51 (60%)
Query: 975 NVGNRMLRSMGWHEGLGLGKDGSGMIEPVQAQAMDSRAGLGSQQKKVDPSL 1025
NV +ML SMGW++G GLG + +G+ E +Q GLG++ K+ ++
Sbjct: 492 NVSMKMLNSMGWNKGSGLGTNENGIKEAIQPTMYLPGVGLGNKGSKIQINM 542
Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 446 PTHVLVVRGLD-EYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASK 504
P ++++GL E +E + ++ A + + L+R+K T SR FAF F S++D+
Sbjct: 69 PNQEIILQGLTPEILEEHIELALYATGAKVSTVTLIREKETQKSRCFAFAKFVSLQDSKD 128
Query: 505 ALEATNGTTLEKNGQILRVAYAKS 528
+EA N TL +G + V ++++
Sbjct: 129 WMEA-NFPTLVIDGIDVSVRFSRA 151
>sp|P62997|TRA2B_RAT Transformer-2 protein homolog beta OS=Rattus norvegicus GN=Tra2b
PE=1 SV=1
Length = 288
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 51/81 (62%), Gaps = 2/81 (2%)
Query: 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKA 505
P L V GL Y E LR FSK+ PI D+ +V D+ + SRGFAF++F +V+DA +A
Sbjct: 116 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEA 175
Query: 506 LEATNGTTLEKNGQILRVAYA 526
E NG +E +G+ +RV ++
Sbjct: 176 KERANG--MELDGRRIRVDFS 194
Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
P+ + V GLS TTE DL ++ +++GP+ V ++ ++ S SRGFAF+ F +V A+
Sbjct: 116 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEA 175
Query: 345 MDRIGDDGLVVDGRKLFFEYS 365
+R +G+ +DGR++ ++S
Sbjct: 176 KERA--NGMELDGRRIRVDFS 194
>sp|P62996|TRA2B_MOUSE Transformer-2 protein homolog beta OS=Mus musculus GN=Tra2b PE=1
SV=1
Length = 288
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 51/81 (62%), Gaps = 2/81 (2%)
Query: 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKA 505
P L V GL Y E LR FSK+ PI D+ +V D+ + SRGFAF++F +V+DA +A
Sbjct: 116 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEA 175
Query: 506 LEATNGTTLEKNGQILRVAYA 526
E NG +E +G+ +RV ++
Sbjct: 176 KERANG--MELDGRRIRVDFS 194
Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
P+ + V GLS TTE DL ++ +++GP+ V ++ ++ S SRGFAF+ F +V A+
Sbjct: 116 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEA 175
Query: 345 MDRIGDDGLVVDGRKLFFEYS 365
+R +G+ +DGR++ ++S
Sbjct: 176 KERA--NGMELDGRRIRVDFS 194
>sp|P62995|TRA2B_HUMAN Transformer-2 protein homolog beta OS=Homo sapiens GN=TRA2B PE=1
SV=1
Length = 288
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 51/81 (62%), Gaps = 2/81 (2%)
Query: 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKA 505
P L V GL Y E LR FSK+ PI D+ +V D+ + SRGFAF++F +V+DA +A
Sbjct: 116 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEA 175
Query: 506 LEATNGTTLEKNGQILRVAYA 526
E NG +E +G+ +RV ++
Sbjct: 176 KERANG--MELDGRRIRVDFS 194
Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
P+ + V GLS TTE DL ++ +++GP+ V ++ ++ S SRGFAF+ F +V A+
Sbjct: 116 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEA 175
Query: 345 MDRIGDDGLVVDGRKLFFEYS 365
+R +G+ +DGR++ ++S
Sbjct: 176 KERA--NGMELDGRRIRVDFS 194
>sp|Q3ZBT6|TRA2B_BOVIN Transformer-2 protein homolog beta OS=Bos taurus GN=TRA2B PE=2 SV=1
Length = 288
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 51/81 (62%), Gaps = 2/81 (2%)
Query: 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKA 505
P L V GL Y E LR FSK+ PI D+ +V D+ + SRGFAF++F +V+DA +A
Sbjct: 116 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEA 175
Query: 506 LEATNGTTLEKNGQILRVAYA 526
E NG +E +G+ +RV ++
Sbjct: 176 KERANG--MELDGRRIRVDFS 194
Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
P+ + V GLS TTE DL ++ +++GP+ V ++ ++ S SRGFAF+ F +V A+
Sbjct: 116 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEA 175
Query: 345 MDRIGDDGLVVDGRKLFFEYS 365
+R +G+ +DGR++ ++S
Sbjct: 176 KERA--NGMELDGRRIRVDFS 194
>sp|Q6PFR5|TRA2A_MOUSE Transformer-2 protein homolog alpha OS=Mus musculus GN=Tra2a PE=1
SV=1
Length = 281
Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
P+ + V GLS TTE DL ++ + +GPL V V+ ++ +G SRGFAF+ F + ++
Sbjct: 115 PNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEA 174
Query: 345 MDRIGDDGLVVDGRKLFFEYS 365
M+R +G+ +DGR++ +YS
Sbjct: 175 MERA--NGMELDGRRIRVDYS 193
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query: 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKA 505
P L V GL Y E LR FS++ P+ + +V D+ T SRGFAF++F ++D+ +A
Sbjct: 115 PNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEA 174
Query: 506 LEATNGTTLEKNGQILRVAYA 526
+E NG +E +G+ +RV Y+
Sbjct: 175 MERANG--MELDGRRIRVDYS 193
>sp|Q13595|TRA2A_HUMAN Transformer-2 protein homolog alpha OS=Homo sapiens GN=TRA2A PE=1
SV=1
Length = 282
Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
P+ + V GLS TTE DL ++ + +GPL V V+ ++ +G SRGFAF+ F + ++
Sbjct: 117 PNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEA 176
Query: 345 MDRIGDDGLVVDGRKLFFEYS 365
M+R +G+ +DGR++ +YS
Sbjct: 177 MERA--NGMELDGRRIRVDYS 195
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query: 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKA 505
P L V GL Y E LR FS++ P+ + +V D+ T SRGFAF++F ++D+ +A
Sbjct: 117 PNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEA 176
Query: 506 LEATNGTTLEKNGQILRVAYA 526
+E NG +E +G+ +RV Y+
Sbjct: 177 MERANG--MELDGRRIRVDYS 195
>sp|Q15415|RBY1F_HUMAN RNA-binding motif protein, Y chromosome, family 1 member F/J
OS=Homo sapiens GN=RBMY1F PE=2 SV=2
Length = 496
Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
L + GL+ +E+ML+ F KH PI ++ L++D+ T SRGFAF+ F + DA A +
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDM 68
Query: 510 NGTTLEKNGQILRVAYAK 527
NGT+L +G+ ++V AK
Sbjct: 69 NGTSL--HGKAIKVEQAK 84
Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
G + + GL+++T E+ L + + GP+ V +IK+R S SRGFAFI F + A+
Sbjct: 8 GKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTS-KSRGFAFITFENPADAKNAAK 66
Query: 347 RIGDDGLVVDGRKLFFEYSSKPTGGSGG 374
+ +G + G+ + E + KP+ SGG
Sbjct: 67 DM--NGTSLHGKAIKVEQAKKPSFQSGG 92
>sp|P0C7P1|RBY1D_HUMAN RNA-binding motif protein, Y chromosome, family 1 member D OS=Homo
sapiens GN=RBMY1D PE=2 SV=1
Length = 496
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
L + GL+ +E+ML+ F KH PI ++ L++D+ T SRGFAF+ F + DA A +
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDM 68
Query: 510 NGTTLEKNGQILRVAYAK 527
NG +L +G+ ++V AK
Sbjct: 69 NGKSL--HGKAIKVEQAK 84
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
G + + GL+++T E+ L + + GP+ V +IK+R S SRGFAFI F + A+
Sbjct: 8 GKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTS-KSRGFAFITFENPADAKNAAK 66
Query: 347 RIGDDGLVVDGRKLFFEYSSKPTGGSGG 374
+ +G + G+ + E + KP+ SGG
Sbjct: 67 DM--NGKSLHGKAIKVEQAKKPSFQSGG 92
>sp|A6NEQ0|RBY1E_HUMAN RNA-binding motif protein, Y chromosome, family 1 member E OS=Homo
sapiens GN=RBMY1E PE=2 SV=1
Length = 496
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
L + GL+ +E+ML+ F KH PI ++ L++D+ T SRGFAF+ F + DA A +
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDM 68
Query: 510 NGTTLEKNGQILRVAYAK 527
NG +L +G+ ++V AK
Sbjct: 69 NGKSL--HGKAIKVEQAK 84
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
G + + GL+++T E+ L + + GP+ V +IK+R S SRGFAFI F + A+
Sbjct: 8 GKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTS-KSRGFAFITFENPADAKNAAK 66
Query: 347 RIGDDGLVVDGRKLFFEYSSKPTGGSGG 374
+ +G + G+ + E + KP+ SGG
Sbjct: 67 DM--NGKSLHGKAIKVEQAKKPSFQSGG 92
>sp|A6NDE4|RBY1B_HUMAN RNA-binding motif protein, Y chromosome, family 1 member B OS=Homo
sapiens GN=RBMY1B PE=2 SV=2
Length = 496
Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
L + GL+ +E+ML+ F KH PI ++ L++D+ T SRGFAF+ F + DA A +
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDM 68
Query: 510 NGTTLEKNGQILRVAYAK 527
NG +L +G+ ++V AK
Sbjct: 69 NGKSL--HGKAIKVEQAK 84
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
G + + GL+++T E+ L + + GP+ V +IK+R S SRGFAFI F + A+
Sbjct: 8 GKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTS-KSRGFAFITFENPADAKNAAK 66
Query: 347 RIGDDGLVVDGRKLFFEYSSKPTGGSGG 374
+ +G + G+ + E + KP+ SGG
Sbjct: 67 DM--NGKSLHGKAIKVEQAKKPSFQSGG 92
>sp|P0DJD3|RBY1A_HUMAN RNA-binding motif protein, Y chromosome, family 1 member A1 OS=Homo
sapiens GN=RBMY1A1 PE=1 SV=1
Length = 496
Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
L + GL+ +E+ML+ F KH PI ++ L++D+ T SRGFAF+ F + DA A +
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDM 68
Query: 510 NGTTLEKNGQILRVAYAK 527
NG +L +G+ ++V AK
Sbjct: 69 NGKSL--HGKAIKVEQAK 84
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
G + + GL+++T E+ L + + GP+ V +IK+R S SRGFAFI F + A+
Sbjct: 8 GKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTS-KSRGFAFITFENPADAKNAAK 66
Query: 347 RIGDDGLVVDGRKLFFEYSSKPTGGSGG 374
+ +G + G+ + E + KP+ SGG
Sbjct: 67 DM--NGKSLHGKAIKVEQAKKPSFQSGG 92
>sp|P0DJD4|RBY1C_HUMAN RNA-binding motif protein, Y chromosome, family 1 member C OS=Homo
sapiens GN=RBMY1C PE=1 SV=1
Length = 496
Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
L + GL+ +E+ML+ F KH PI ++ L++D+ T SRGFAF+ F + DA A +
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDM 68
Query: 510 NGTTLEKNGQILRVAYAK 527
NG +L +G+ ++V A+
Sbjct: 69 NGKSL--HGKAIKVEQAQ 84
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
G + + GL+++T E+ L + + GP+ V +IK+R S SRGFAFI F + A+
Sbjct: 8 GKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTS-KSRGFAFITFENPADAKNAAK 66
Query: 347 RIGDDGLVVDGRKLFFEYSSKPTGGSGG 374
+ +G + G+ + E + KP+ SGG
Sbjct: 67 DM--NGKSLHGKAIKVEQAQKPSFQSGG 92
>sp|Q9NW75|GPTC2_HUMAN G patch domain-containing protein 2 OS=Homo sapiens GN=GPATCH2 PE=1
SV=1
Length = 528
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 39/69 (56%), Gaps = 9/69 (13%)
Query: 947 PGVGGRGFTADSVQSYEVITADKAIDENNVGNRMLRSMGWHEGLGLGKDGSGMIEPVQAQ 1006
PG GF ++ Q I ENN+GNRML++MGW G GLG+DG G+ EP+QA
Sbjct: 450 PGPTTAGFVGENAQ---------PILENNIGNRMLQNMGWTPGSGLGRDGKGISEPIQAM 500
Query: 1007 AMDSRAGLG 1015
GLG
Sbjct: 501 QRPKGLGLG 509
>sp|Q7TQC7|GPTC2_MOUSE G patch domain-containing protein 2 OS=Mus musculus GN=Gpatch2 PE=2
SV=2
Length = 527
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 36/56 (64%)
Query: 969 KAIDENNVGNRMLRSMGWHEGLGLGKDGSGMIEPVQAQAMDSRAGLGSQQKKVDPS 1024
+ I E+N+GNRML+SMGW G GLG+DG G+ EPVQA GLG K P+
Sbjct: 462 QPILESNIGNRMLQSMGWTPGSGLGRDGRGIAEPVQAVQRPKGLGLGFPLPKSSPT 517
>sp|Q7TN31|AGGF1_MOUSE Angiogenic factor with G patch and FHA domains 1 OS=Mus musculus
GN=Aggf1 PE=2 SV=1
Length = 711
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 35/47 (74%)
Query: 597 QSGFVWDEASGYYYDAASGFYYDGNTGLYYDGNSGIWYSYDQQTQQY 643
Q+GF +DE++G Y+D ++GFYYD LYYD ++GI+Y D ++ +Y
Sbjct: 204 QTGFTYDESTGLYFDHSTGFYYDSENQLYYDPSTGIYYYCDVESGRY 250
Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 30/46 (65%)
Query: 971 IDENNVGNRMLRSMGWHEGLGLGKDGSGMIEPVQAQAMDSRAGLGS 1016
I ++N G +ML MGW G GLGKDG GM P+Q Q + AGLG+
Sbjct: 614 ITDSNKGRKMLEKMGWKRGEGLGKDGGGMKTPIQLQLRRTHAGLGT 659
>sp|P08199|NUCL_MESAU Nucleolin OS=Mesocricetus auratus GN=NCL PE=1 SV=2
Length = 714
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 113/278 (40%), Gaps = 52/278 (18%)
Query: 261 GRYERIEKRRDREERRQREHYAVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIK 320
G ++EK + R+ ++ R + T++ K LS TE++L ++ + +R V
Sbjct: 374 GNEIKLEKPKGRDSKKVRA------ARTLLAKNLSFNITEDELKEVFEDALEIRLVS--- 424
Query: 321 ERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYSSKPTGGSGGHYGQES 380
G S+G A+I+F S A ++ G +DGR + Y+ G G + +
Sbjct: 425 --QDGKSKGIAYIEFKSEADAEKNLEE--KQGAEIDGRSVSLYYT-----GEKGQRQERT 475
Query: 381 AMGARHSNHKSTIPCDWMC------TICGCVNFARRTSCFQCNEART-----------DD 423
+ S T+ + T+ A Q + ++ +D
Sbjct: 476 GKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQQGKSKGYAFIEFASFED 535
Query: 424 APPAEMNSSNPI-------------PLGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSK 470
A A +NS N + P G + + P+ L V+GL E EE L+ F
Sbjct: 536 AKEA-LNSCNKMEIEGRTIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFEG 594
Query: 471 HAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEA 508
R+V D+ T S+GF F+ F+S EDA A EA
Sbjct: 595 SV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEA 629
Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 63/111 (56%), Gaps = 10/111 (9%)
Query: 260 DGRYERIEKRRDREERRQREHYAVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVI 319
+GR R+E + R R PS T+ VKGLS+ TTEE L + G +R R++
Sbjct: 549 EGRTIRLELQGPRGSPNARSQ----PSKTLFVKGLSEDTTEETLKESFE--GSVR-ARIV 601
Query: 320 KERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYSSKPTG 370
+R +G S+GF F+DF S A+A + + +DG +DG K+ ++ +KP G
Sbjct: 602 TDRETGSSKGFGFVDFNSEEDAKAAKEAM-EDG-EIDGNKVTLDW-AKPKG 649
Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 10/106 (9%)
Query: 438 GKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFH 497
GK + +G + LV+ L A EE L+ F K IK + + K S+G+AF+ F
Sbjct: 476 GKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQQGK----SKGYAFIEFA 531
Query: 498 SVEDASKALEATNGTTLEKNGQILRVAYAKSILGPGSGMSASSQSS 543
S EDA +AL + N +E G+ +R+ + GP +A SQ S
Sbjct: 532 SFEDAKEALNSCNKMEIE--GRTIRL----ELQGPRGSPNARSQPS 571
Score = 34.3 bits (77), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Query: 428 EMNSSNPIPLGKK----GSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDK 483
EM +P KK GS++ L + L+ L+ S+ DL +V D
Sbjct: 284 EMTKQKEVPEAKKQKVEGSESTTPFNLFIGNLNPNKSVAELKVAISEPFAKNDLAVV-DV 342
Query: 484 FTHVSRGFAFLHFHSVEDASKALEAT 509
T +R F ++ F S ED KALE T
Sbjct: 343 RTGTNRKFGYVDFESAEDLEKALELT 368
>sp|O02008|TRA2_DROVI Transformer-2 sex-determining protein OS=Drosophila virilis GN=tra2
PE=3 SV=1
Length = 272
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 57/96 (59%), Gaps = 3/96 (3%)
Query: 270 RDREERRQREHYAVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRG 329
RDR+ RQ + A S I V GL+ TT++ + ++ ++GP+ ++++ + ++ SRG
Sbjct: 89 RDRQRMRQARDHPQA-SRCIGVFGLNTNTTQQKVRELFNKFGPIERIQMVIDAHTHRSRG 147
Query: 330 FAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYS 365
F FI F ++G AR D G+ VDGR++ +YS
Sbjct: 148 FCFIYFENLGDARVAKD--ACTGMEVDGRRIRVDYS 181
Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Query: 452 VRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNG 511
V GL+ ++ +R F+K PI+ +++V D TH SRGF F++F ++ DA A +A G
Sbjct: 109 VFGLNTNTTQQKVRELFNKFGPIERIQMVIDAHTHRSRGFCFIYFENLGDARVAKDACTG 168
Query: 512 TTLEKNGQILRVAYA 526
+E +G+ +RV Y+
Sbjct: 169 --MEVDGRRIRVDYS 181
>sp|O89086|RBM3_MOUSE Putative RNA-binding protein 3 OS=Mus musculus GN=Rbm3 PE=1 SV=1
Length = 153
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
L V GL+ DE+ L FS PI ++ +V+D+ T SRGF F+ F + E AS A+ A
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAM 67
Query: 510 NGTTLEKNGQILRVAYA 526
NG +L+ G+ +RV +A
Sbjct: 68 NGESLD--GRQIRVDHA 82
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 10/85 (11%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFP----SVGAAR 342
G + V GL+ T E+ L + +GP+ V V+K+R + SRGF FI F + A R
Sbjct: 6 GKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMR 65
Query: 343 AMMDRIGDDGLVVDGRKLFFEYSSK 367
AM +G +DGR++ +++ K
Sbjct: 66 AM------NGESLDGRQIRVDHAGK 84
>sp|P98179|RBM3_HUMAN Putative RNA-binding protein 3 OS=Homo sapiens GN=RBM3 PE=1 SV=1
Length = 157
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
L V GL+ DE+ L FS PI ++ +V+D+ T SRGF F+ F + E AS A+ A
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAM 67
Query: 510 NGTTLEKNGQILRVAYA 526
NG +L+ G+ +RV +A
Sbjct: 68 NGESLD--GRQIRVDHA 82
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
G + V GL+ T E+ L + +GP+ V V+K+R + SRGF FI F + A M
Sbjct: 6 GKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMR 65
Query: 347 RIGDDGLVVDGRKLFFEYSSKPTGGS 372
+ +G +DGR++ +++ K G+
Sbjct: 66 AM--NGESLDGRQIRVDHAGKSARGT 89
>sp|P13383|NUCL_RAT Nucleolin OS=Rattus norvegicus GN=Ncl PE=1 SV=3
Length = 713
Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 68/275 (24%), Positives = 119/275 (43%), Gaps = 46/275 (16%)
Query: 261 GRYERIEKRRDREERRQREHYAVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIK 320
G ++EK + R+ ++ R + T++ K LS TE++L ++ + +R V
Sbjct: 377 GNEIKLEKPKGRDSKKVRA------ARTLLAKNLSFNITEDELKEVFEDAVEIRLVS--- 427
Query: 321 ERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYSSKP------TGGSGG 374
G S+G A+I+F S A ++ G +DGR + Y+ + TG +
Sbjct: 428 --QDGRSKGIAYIEFKSEADAEKNLEE--KQGAEIDGRSVSLYYTGEKGQRQERTGKNST 483
Query: 375 HYGQESAMGARHSNHKSTIPCDWMCTICGCVNFAR-------RTSCFQCNE-ARTDDAPP 426
G+ + + ++ +T + + + F + ++ + E A +DA
Sbjct: 484 WSGESKTLVLSNLSYSAT--EETLQEVFEKATFIKVPQNPHGKSKGYAFIEFASFEDAKE 541
Query: 427 AEMNSSNPI-------------PLGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAP 473
A +NS N + P G + + P+ L V+GL E EE L+ F
Sbjct: 542 A-LNSCNKMEIEGRTIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFEGSV- 599
Query: 474 IKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEA 508
R+V D+ T S+GF F+ F+S EDA A EA
Sbjct: 600 --RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEA 632
Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 75/144 (52%), Gaps = 25/144 (17%)
Query: 242 RSPRGRSHGRSHRE-DSYDD--------------GRYERIEKRRDREERRQREHYAVAPS 286
++P G+S G + E S++D GR R+E + R R PS
Sbjct: 519 QNPHGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPNARSQ----PS 574
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
T+ VKGLS+ TTEE L + G +R R++ +R +G S+GF F+DF S A+A +
Sbjct: 575 KTLFVKGLSEDTTEETLKESFE--GSVR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKE 631
Query: 347 RIGDDGLVVDGRKLFFEYSSKPTG 370
+ +DG +DG K+ ++ +KP G
Sbjct: 632 AM-EDG-EIDGNKVTLDW-AKPKG 652
Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 53/106 (50%), Gaps = 10/106 (9%)
Query: 438 GKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFH 497
GK + +G + LV+ L A EE L+ F K IK + K S+G+AF+ F
Sbjct: 479 GKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNPHGK----SKGYAFIEFA 534
Query: 498 SVEDASKALEATNGTTLEKNGQILRVAYAKSILGPGSGMSASSQSS 543
S EDA +AL + N +E G+ +R+ + GP +A SQ S
Sbjct: 535 SFEDAKEALNSCNKMEIE--GRTIRL----ELQGPRGSPNARSQPS 574
>sp|P09405|NUCL_MOUSE Nucleolin OS=Mus musculus GN=Ncl PE=1 SV=2
Length = 707
Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 120/271 (44%), Gaps = 42/271 (15%)
Query: 261 GRYERIEKRRDREERRQREHYAVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIK 320
G ++EK + R+ ++ R + T++ K LS TE++L ++ + +R V
Sbjct: 375 GNEIKLEKPKGRDSKKVR------AARTLLAKNLSFNITEDELKEVFEDAMEIRLVS--- 425
Query: 321 ERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYSSKP------TGGSGG 374
G S+G A+I+F S A ++ G +DGR + Y+ + TG +
Sbjct: 426 --QDGKSKGIAYIEFKSEADAEKNLEE--KQGAEIDGRSVSLYYTGEKGQRQERTGKTST 481
Query: 375 HYGQESAMGARHSNHKSTIPCDWMCTICGCVNFAR-------RTSCFQCNE-ARTDDAPP 426
G+ + + ++ +T + + + F + + + E A +DA
Sbjct: 482 WSGESKTLVLSNLSYSAT--KETLEEVFEKATFIKVPQNPHGKPKGYAFIEFASFEDAKE 539
Query: 427 AEMNSSN-------PIPLGKKGSDT--GPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDL 477
A +NS N I L +GS++ P+ L V+GL E EE L+ F
Sbjct: 540 A-LNSCNKMEIEGRTIRLELQGSNSRSQPSKTLFVKGLSEDTTEETLKESFEGSV---RA 595
Query: 478 RLVRDKFTHVSRGFAFLHFHSVEDASKALEA 508
R+V D+ T S+GF F+ F+S EDA A EA
Sbjct: 596 RIVTDRETGSSKGFGFVDFNSEEDAKAAKEA 626
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 74/137 (54%), Gaps = 15/137 (10%)
Query: 242 RSPRGRSHGRSHRE-DSYDDGRYE-------RIEKRRDREERRQREHYAVAPSGTIVVKG 293
++P G+ G + E S++D + IE R R E Q + PS T+ VKG
Sbjct: 517 QNPHGKPKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLEL-QGSNSRSQPSKTLFVKG 575
Query: 294 LSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGL 353
LS+ TTEE L + G +R R++ +R +G S+GF F+DF S A+A + + +DG
Sbjct: 576 LSEDTTEETLKESFE--GSVR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM-EDG- 630
Query: 354 VVDGRKLFFEYSSKPTG 370
+DG K+ ++ +KP G
Sbjct: 631 EIDGNKVTLDW-AKPKG 646
Score = 37.0 bits (84), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 438 GKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFH 497
GK + +G + LV+ L A +E L F K IK + K +G+AF+ F
Sbjct: 477 GKTSTWSGESKTLVLSNLSYSATKETLEEVFEKATFIKVPQNPHGK----PKGYAFIEFA 532
Query: 498 SVEDASKALEATNGTTLEKNGQILRV 523
S EDA +AL + N +E G+ +R+
Sbjct: 533 SFEDAKEALNSCNKMEIE--GRTIRL 556
>sp|Q9D384|U1SBP_MOUSE U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Mus
musculus GN=Snrnp35 PE=2 SV=1
Length = 244
Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 53/86 (61%), Gaps = 4/86 (4%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
P T+ V L+ +T EE L ++ + +G +R +R++++ +G S+G+AFI++ RA+
Sbjct: 49 PLLTLFVARLNLQTKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKE---ERAL 105
Query: 345 MDRIGD-DGLVVDGRKLFFEYSSKPT 369
M D DGLV+D ++F +Y + T
Sbjct: 106 MKAYRDADGLVIDQHEIFVDYELERT 131
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 45/92 (48%)
Query: 440 KGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSV 499
KG P L V L+ EE L+ FS++ I+ LRLVRD T S+G+AF+ +
Sbjct: 43 KGVTGDPLLTLFVARLNLQTKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEE 102
Query: 500 EDASKALEATNGTTLEKNGQILRVAYAKSILG 531
KA +G ++++ + +++ G
Sbjct: 103 RALMKAYRDADGLVIDQHEIFVDYELERTLRG 134
>sp|Q925G0|RBM3_RAT Putative RNA-binding protein 3 OS=Rattus norvegicus GN=Rbm3 PE=1
SV=2
Length = 155
Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
L V GL+ DE+ L FS PI ++ +V+D+ T SRGF F+ F + E AS + A
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRAM 67
Query: 510 NGTTLEKNGQILRVAYA 526
NG +L+ G+ +RV +A
Sbjct: 68 NGESLD--GRQIRVDHA 82
Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 3/92 (3%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
G + V GL+ T E+ L + +GP+ V V+K+R + SRGF FI F + A +M
Sbjct: 6 GKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMR 65
Query: 347 RIGDDGLVVDGRKLFFEYSSKPTGGS-GGHYG 377
+ +G +DGR++ +++ K G+ GG +G
Sbjct: 66 AM--NGESLDGRQIRVDHAGKSARGTRGGAFG 95
>sp|Q5RF26|NUCL_PONAB Nucleolin OS=Pongo abelii GN=NCL PE=2 SV=3
Length = 712
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/288 (23%), Positives = 120/288 (41%), Gaps = 45/288 (15%)
Query: 261 GRYERIEKRRDREERRQREHYAVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIK 320
G ++EK + ++ +++R+ + T++ K L K T+++L ++ + +R V
Sbjct: 375 GNEIKLEKPKGKDSKKERD------ARTLLAKNLPYKVTQDELKEVFEDAAEIRLVS--- 425
Query: 321 ERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYSSKP------TGGSGG 374
G S+G A+I+F + A + G +DGR + Y+ + GG
Sbjct: 426 --KDGKSKGIAYIEFKTEADAEKTFEE--KQGTEIDGRSISLYYTGEKGQNQDYRGGKNS 481
Query: 375 HYGQESAMGARHSNHKSTIPCDWMCTICGCVNFAR-------RTSCFQCNE-ARTDDAPP 426
+ ES SN + + + + F + ++ + E A +DA
Sbjct: 482 TWSGESKTLV-LSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKE 540
Query: 427 AEMNSSNPI-------------PLGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAP 473
A +NS N P G + + P+ L V+GL E EE L+ F
Sbjct: 541 A-LNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGSV- 598
Query: 474 IKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQIL 521
R+V D+ T S+GF F+ F+S EDA A EA ++ N L
Sbjct: 599 --RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 644
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 63/111 (56%), Gaps = 10/111 (9%)
Query: 260 DGRYERIEKRRDREERRQREHYAVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVI 319
+GR R+E + R R PS T+ VKGLS+ TTEE L + G +R R++
Sbjct: 551 EGRAIRLELQGPRGSPNARSQ----PSKTLFVKGLSEDTTEETLKESFD--GSVR-ARIV 603
Query: 320 KERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYSSKPTG 370
+R +G S+GF F+DF S A+A + + +DG +DG K+ ++ +KP G
Sbjct: 604 TDRETGSSKGFGFVDFNSEEDAKAAKEAM-EDG-EIDGNKVTLDW-AKPKG 651
Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 52/106 (49%), Gaps = 10/106 (9%)
Query: 438 GKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFH 497
GK + +G + LV+ L A EE L+ F K IK V S+G+AF+ F
Sbjct: 478 GKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFA 533
Query: 498 SVEDASKALEATNGTTLEKNGQILRVAYAKSILGPGSGMSASSQSS 543
S EDA +AL + N +E G+ +R+ + GP +A SQ S
Sbjct: 534 SFEDAKEALNSCNKREIE--GRAIRL----ELQGPRGSPNARSQPS 573
>sp|P19338|NUCL_HUMAN Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3
Length = 710
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/288 (23%), Positives = 120/288 (41%), Gaps = 45/288 (15%)
Query: 261 GRYERIEKRRDREERRQREHYAVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIK 320
G ++EK + ++ +++R+ + T++ K L K T+++L ++ + +R V
Sbjct: 373 GNEIKLEKPKGKDSKKERD------ARTLLAKNLPYKVTQDELKEVFEDAAEIRLVS--- 423
Query: 321 ERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYSSKP------TGGSGG 374
G S+G A+I+F + A + G +DGR + Y+ + GG
Sbjct: 424 --KDGKSKGIAYIEFKTEADAEKTFEE--KQGTEIDGRSISLYYTGEKGQNQDYRGGKNS 479
Query: 375 HYGQESAMGARHSNHKSTIPCDWMCTICGCVNFAR-------RTSCFQCNE-ARTDDAPP 426
+ ES SN + + + + F + ++ + E A +DA
Sbjct: 480 TWSGESKTLV-LSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKE 538
Query: 427 AEMNSSNPI-------------PLGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAP 473
A +NS N P G + + P+ L V+GL E EE L+ F
Sbjct: 539 A-LNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGSV- 596
Query: 474 IKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQIL 521
R+V D+ T S+GF F+ F+S EDA A EA ++ N L
Sbjct: 597 --RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 642
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 63/111 (56%), Gaps = 10/111 (9%)
Query: 260 DGRYERIEKRRDREERRQREHYAVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVI 319
+GR R+E + R R PS T+ VKGLS+ TTEE L + G +R R++
Sbjct: 549 EGRAIRLELQGPRGSPNARSQ----PSKTLFVKGLSEDTTEETLKESFD--GSVR-ARIV 601
Query: 320 KERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYSSKPTG 370
+R +G S+GF F+DF S A+A + + +DG +DG K+ ++ +KP G
Sbjct: 602 TDRETGSSKGFGFVDFNSEEDAKAAKEAM-EDG-EIDGNKVTLDW-AKPKG 649
Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 52/106 (49%), Gaps = 10/106 (9%)
Query: 438 GKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFH 497
GK + +G + LV+ L A EE L+ F K IK V S+G+AF+ F
Sbjct: 476 GKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFA 531
Query: 498 SVEDASKALEATNGTTLEKNGQILRVAYAKSILGPGSGMSASSQSS 543
S EDA +AL + N +E G+ +R+ + GP +A SQ S
Sbjct: 532 SFEDAKEALNSCNKREIE--GRAIRL----ELQGPRGSPNARSQPS 571
>sp|Q4R4J7|NUCL_MACFA Nucleolin OS=Macaca fascicularis GN=NCL PE=2 SV=3
Length = 711
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/288 (23%), Positives = 120/288 (41%), Gaps = 45/288 (15%)
Query: 261 GRYERIEKRRDREERRQREHYAVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIK 320
G ++EK + ++ +++R+ + T++ K L K T+++L ++ + +R V
Sbjct: 374 GNEIKLEKPKGKDSKKERD------ARTLLAKNLPYKVTQDELKEVFEDAAEIRLVS--- 424
Query: 321 ERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYSSKP------TGGSGG 374
G S+G A+I+F + A + G +DGR + Y+ + GG
Sbjct: 425 --KDGKSKGIAYIEFKTEADAEKTFEE--KQGTEIDGRSISLYYTGEKGQNQDYRGGKNS 480
Query: 375 HYGQESAMGARHSNHKSTIPCDWMCTICGCVNFAR-------RTSCFQCNE-ARTDDAPP 426
+ ES SN + + + + F + ++ + E A +DA
Sbjct: 481 TWSGESKTLV-LSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKE 539
Query: 427 AEMNSSNPI-------------PLGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAP 473
A +NS N P G + + P+ L V+GL E EE L+ F
Sbjct: 540 A-LNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGSV- 597
Query: 474 IKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQIL 521
R+V D+ T S+GF F+ F+S EDA A EA ++ N L
Sbjct: 598 --RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 643
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 63/111 (56%), Gaps = 10/111 (9%)
Query: 260 DGRYERIEKRRDREERRQREHYAVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVI 319
+GR R+E + R R PS T+ VKGLS+ TTEE L + G +R R++
Sbjct: 550 EGRAIRLELQGPRGSPNARSQ----PSKTLFVKGLSEDTTEETLKESFD--GSVR-ARIV 602
Query: 320 KERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYSSKPTG 370
+R +G S+GF F+DF S A+A + + +DG +DG K+ ++ +KP G
Sbjct: 603 TDRETGSSKGFGFVDFNSEEDAKAAKEAM-EDG-EIDGNKVTLDW-AKPKG 650
Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 52/106 (49%), Gaps = 10/106 (9%)
Query: 438 GKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFH 497
GK + +G + LV+ L A EE L+ F K IK V S+G+AF+ F
Sbjct: 477 GKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFA 532
Query: 498 SVEDASKALEATNGTTLEKNGQILRVAYAKSILGPGSGMSASSQSS 543
S EDA +AL + N +E G+ +R+ + GP +A SQ S
Sbjct: 533 SFEDAKEALNSCNKREIE--GRAIRL----ELQGPRGSPNARSQPS 572
>sp|Q28IQ9|CIRBP_XENTR Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp
PE=2 SV=1
Length = 166
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMD 346
G + V GL+ +TTEE L Q+ +++G + V V+K+R S SRGF F+ F + A+ M
Sbjct: 6 GKLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAM- 64
Query: 347 RIGDDGLVVDGRKL 360
+ +G VDGR++
Sbjct: 65 -MAMNGKSVDGRQI 77
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
L V GL+ EE L FSK+ + ++ +V+D+ + SRGF F+ F + EDA A+ A
Sbjct: 8 LFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAM 67
Query: 510 NGTTLEKNGQILRV 523
NG ++ +G+ +RV
Sbjct: 68 NGKSV--DGRQIRV 79
>sp|P19018|TRA2_DROME Transformer-2 sex-determining protein OS=Drosophila melanogaster
GN=tra2 PE=1 SV=1
Length = 264
Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 54/97 (55%), Gaps = 5/97 (5%)
Query: 270 RDREE-RRQREHYAVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSR 328
RDRE + REH S I V GL+ T++ + ++ ++GP+ ++++ + + SR
Sbjct: 81 RDRERMHKSREH--PQASRCIGVFGLNTNTSQHKVRELFNKYGPIERIQMVIDAQTQRSR 138
Query: 329 GFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYS 365
GF FI F + ARA D G+ VDGR++ ++S
Sbjct: 139 GFCFIYFEKLSDARAAKDSCS--GIEVDGRRIRVDFS 173
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Query: 449 VLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEA 508
+ V GL+ + +R F+K+ PI+ +++V D T SRGF F++F + DA A ++
Sbjct: 98 CIGVFGLNTNTSQHKVRELFNKYGPIERIQMVIDAQTQRSRGFCFIYFEKLSDARAAKDS 157
Query: 509 TNGTTLEKNGQILRVAYA 526
+G +E +G+ +RV ++
Sbjct: 158 CSG--IEVDGRRIRVDFS 173
>sp|Q9DED4|CIRBB_XENLA Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-b
PE=1 SV=1
Length = 166
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 283 VAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAAR 342
++ G + + GL+ T EE L Q+ +++G + V V+K+R + SRGF F+ F + A+
Sbjct: 1 MSDEGKLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAK 60
Query: 343 AMMDRIGDDGLVVDGRKL 360
M + +G VDGR++
Sbjct: 61 DAM--MAMNGKAVDGRQI 76
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509
L + GL+ +EE L FSK+ I ++ +V+D+ T SRGF F+ F + +DA A+ A
Sbjct: 7 LFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAM 66
Query: 510 NGTTLEKNGQILRV 523
NG ++ G+ +RV
Sbjct: 67 NGKAVD--GRQIRV 78
>sp|Q92804|RBP56_HUMAN TATA-binding protein-associated factor 2N OS=Homo sapiens GN=TAF15
PE=1 SV=1
Length = 592
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 70/158 (44%), Gaps = 20/158 (12%)
Query: 288 TIVVKGLSQKTTEEDLYQILAEWGPLR--------HVRVIKERNSGVSRGFAFIDFPSVG 339
TI V+GL + + + + + + G ++ + + ++++G +G A + F
Sbjct: 235 TIFVQGLGEGVSTDQVGEFFKQIGIIKTNKKTGKPMINLYTDKDTGKPKGEATVSFDDPP 294
Query: 340 AARAMMDRIGDDGLVVDGRKLFFEYSSK--------PTGGSGGHYGQESAMGARHSNHKS 391
+A+A +D DG G + ++++ +GG G G
Sbjct: 295 SAKAAIDWF--DGKEFHGNIIKVSFATRRPEFMRGGGSGGGRRGRGGYRGRGGFQGRGGD 352
Query: 392 TIPCDWMCT--ICGCVNFARRTSCFQCNEARTDDAPPA 427
DW+C CG +NFARR SC QCNE R +D+ P+
Sbjct: 353 PKSGDWVCPNPSCGNMNFARRNSCNQCNEPRPEDSRPS 390
>sp|Q54PB2|MRD1_DICDI Multiple RNA-binding domain-containing protein 1 OS=Dictyostelium
discoideum GN=mrd1 PE=3 SV=1
Length = 895
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
PS I++K L ++T +++ ++ +G ++ VR+ K+ N G RGF F++F + A+
Sbjct: 793 PSSKIIIKNLPFESTIKEIRKLFTAYGEIQSVRIPKKPNGG-HRGFGFVEFLTEEEAKNA 851
Query: 345 MDRIGDDGLVVDGRKLFFEYS 365
M+ +G+ GR L +Y+
Sbjct: 852 MEALGNSHFY--GRHLVLQYA 870
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
Query: 278 REHYAVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDF-- 335
+E V SG I V+ LS T EEDL ++ +++G + + + + +S S+G AFI +
Sbjct: 352 KEDEDVGESGRIFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYLI 411
Query: 336 PSVGAARAMMDRIGDDGLVVDGRKL 360
P A +A+ D DG V GR +
Sbjct: 412 PE-NAVQALNDM---DGKVFQGRLI 432
Score = 37.0 bits (84), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 439 KKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHS 498
K+ D G + + VR L EE L FSK I ++ + D + S+G AF+ +
Sbjct: 352 KEDEDVGESGRIFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYLI 411
Query: 499 VEDASKALEATNGTTLEKNGQILRVAYAKS 528
E+A +AL +G + G+++ V K+
Sbjct: 412 PENAVQALNDMDGKVFQ--GRLIHVLPGKA 439
>sp|Q60900|ELAV3_MOUSE ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1 SV=1
Length = 367
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/253 (20%), Positives = 107/253 (42%), Gaps = 30/253 (11%)
Query: 289 IVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRI 348
+ V GL + +++++ Q+ +++G + R++ ++ +GVSRG FI F A + +
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 349 GDDGLVVDGRKLFFEYSSKPTGGSG----GHYGQESAMGARHSNHKSTIPCDWMCTICGC 404
+ + ++++ P+ +G H Q SA H T
Sbjct: 187 NGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQT------------ 234
Query: 405 VNFARRTSCFQCNEARTDDAPPAEMNSSNPIPL-GKKGSDTGPTH--------VLVVRGL 455
R N A +P + + +PI + G G + V L
Sbjct: 235 ---QRFRLDNLLNMAYGVKSPLSLIARFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNL 291
Query: 456 DEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLE 515
ADE +L F + +++++RD T+ +GF F+ + ++A+ A+ + NG L
Sbjct: 292 SPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLG 351
Query: 516 KNGQILRVAYAKS 528
+ ++L+V++ S
Sbjct: 352 E--RVLQVSFKTS 362
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 3/117 (2%)
Query: 411 TSCFQCNEARTDDAPPAEMNSSNPIPLGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSK 470
T E++ P + P+ LG G+ L+V L + ++ + F
Sbjct: 3 TQILGAMESQVGGGPAGPALPNGPL-LGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGS 61
Query: 471 HAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYAK 527
I+ +LVRDK T S G+ F+++ DA KA+ NG L+ + ++V+YA+
Sbjct: 62 IGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQT--KTIKVSYAR 116
>sp|Q14576|ELAV3_HUMAN ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1 SV=3
Length = 367
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/253 (20%), Positives = 107/253 (42%), Gaps = 30/253 (11%)
Query: 289 IVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRI 348
+ V GL + +++++ Q+ +++G + R++ ++ +GVSRG FI F A + +
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 349 GDDGLVVDGRKLFFEYSSKPTGGSG----GHYGQESAMGARHSNHKSTIPCDWMCTICGC 404
+ + ++++ P+ +G H Q SA H T
Sbjct: 187 NGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQT------------ 234
Query: 405 VNFARRTSCFQCNEARTDDAPPAEMNSSNPIPL-GKKGSDTGPTH--------VLVVRGL 455
R N A +P + + +PI + G G + V L
Sbjct: 235 ---QRFRLDNLLNMAYGVKSPLSLIARFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNL 291
Query: 456 DEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLE 515
ADE +L F + +++++RD T+ +GF F+ + ++A+ A+ + NG L
Sbjct: 292 SPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLG 351
Query: 516 KNGQILRVAYAKS 528
+ ++L+V++ S
Sbjct: 352 E--RVLQVSFKTS 362
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 3/117 (2%)
Query: 411 TSCFQCNEARTDDAPPAEMNSSNPIPLGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSK 470
T E++ P + P+ LG G+ L+V L + ++ + F
Sbjct: 3 TQILGAMESQVGGGPAGPALPNGPL-LGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGS 61
Query: 471 HAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYAK 527
I+ +LVRDK T S G+ F+++ DA KA+ NG L+ + ++V+YA+
Sbjct: 62 IGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQT--KTIKVSYAR 116
>sp|Q42404|RU17_ARATH U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis thaliana
GN=RNU1 PE=1 SV=1
Length = 427
Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 7/99 (7%)
Query: 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKA 505
P L V L+ + E ++ EF + PIK + LV D+ T+ +G+AF+ + D A
Sbjct: 136 PYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAA 195
Query: 506 LEATNGTTLEKNGQILRVAYAKSI-------LGPGSGMS 537
+ +G ++ ++ V +++ LG G G S
Sbjct: 196 YKQADGQKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTS 234
Score = 40.8 bits (94), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
P T+ V L+ +++E + + +GP++ V ++ ++ + +G+AFI++ +A
Sbjct: 136 PYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAA 195
Query: 345 MDRIGDDGLVVDGRKLFFE 363
+ DG +DGR++ +
Sbjct: 196 YKQA--DGQKIDGRRVLVD 212
>sp|P27476|NSR1_YEAST Nuclear localization sequence-binding protein OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NSR1 PE=1
SV=1
Length = 414
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 10/123 (8%)
Query: 403 GCVNFARRT---SCFQCNEARTDDAPPAEMNSSNPIPLG-----KKGSDT--GPTHVLVV 452
G V+F ++ Q + + D P + S P G KK DT P+ L +
Sbjct: 212 GYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFL 271
Query: 453 RGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGT 512
L AD + + F+KH + +R+ T +GF ++ F ++EDA KAL+A G
Sbjct: 272 GNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGE 331
Query: 513 TLE 515
++
Sbjct: 332 YID 334
Score = 37.7 bits (86), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Query: 275 RRQREHYAVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFID 334
++Q+ P+ TI V LS +E L + G + RVI ER + SRG+ ++D
Sbjct: 157 KKQKNEETEEPA-TIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVD 215
Query: 335 FPSVGAARAMMDRIGDDGLVVDGRKLFFEYS-SKPTGGS 372
F + A + + G +DGR + + S SKP G +
Sbjct: 216 FENKSYAEKAIQEM--QGKEIDGRPINCDMSTSKPAGNN 252
Score = 37.4 bits (85), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAM 344
PS T+ + LS + ++++ A+ G + VR+ + +GF ++ F ++ A+
Sbjct: 265 PSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKA 324
Query: 345 MDRIGDDGLVVDGRKLFFEYSS 366
+D + G +D R + ++SS
Sbjct: 325 LDAL--QGEYIDNRPVRLDFSS 344
>sp|O13845|RSD1_SCHPO RNA-binding protein rsd1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rsd1 PE=1 SV=2
Length = 603
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 37/60 (61%), Gaps = 3/60 (5%)
Query: 288 TIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDF---PSVGAARAM 344
T+ V L+ + T +LY + GP+R ++++++ SG S+G A+++F SV AA A+
Sbjct: 241 TVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIAL 300
>sp|Q8L716|U2A2B_ARATH Splicing factor U2af large subunit B OS=Arabidopsis thaliana
GN=U2AF65B PE=2 SV=2
Length = 589
Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 53/116 (45%), Gaps = 6/116 (5%)
Query: 289 IVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDF--PSVG-AARAMM 345
I V GL TE + ++L +GPLR ++K+R +G S+G+AF + PSV A A +
Sbjct: 377 IFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAAL 436
Query: 346 D--RIGDDGLVVDGRKLFFEYSSKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMC 399
+ ++GD L V R + KP Y Q+ R P +C
Sbjct: 437 NGIKMGDKTLTVR-RAIQGAIQPKPEQEEVLLYAQQQIALQRLMFQPGGTPTKIVC 491
Score = 38.5 bits (88), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 1/92 (1%)
Query: 438 GKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFH 497
G G GP + V GL Y E +R P++ LV+D+ T S+G+AF +
Sbjct: 366 GSTGGLEGPDRIFV-GGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQ 424
Query: 498 SVEDASKALEATNGTTLEKNGQILRVAYAKSI 529
A A NG + +R A +I
Sbjct: 425 DPSVTDIACAALNGIKMGDKTLTVRRAIQGAI 456
>sp|Q86U06|RBM23_HUMAN Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1
Length = 439
Score = 42.7 bits (99), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 445 GPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASK 504
GP L V L E+MLR F I ++ L++D T S+G+ F+ F E A +
Sbjct: 261 GPMR-LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARR 319
Query: 505 ALEATNGTTLEKNGQILRVAYAKSILGPGSGMS 537
ALE NG E G+ +RV + L G+ ++
Sbjct: 320 ALEQLNG--FELAGRPMRVGHVTERLDGGTDIT 350
Score = 40.4 bits (93), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 56/134 (41%), Gaps = 17/134 (12%)
Query: 208 SRERELSPHRRHEHSASRSQSRSRSRGRDDRPRSRSP---RGRSHGRSHREDSYDDGRYE 264
R R S RRH S+SRSR R+DR RSP G +G S +
Sbjct: 98 CRHRSRSWDRRHG-----SESRSRDHRREDRVHYRSPPLATGYRYGHSKSPHFREKSPVR 152
Query: 265 RIEKRRDREERRQREHYAVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNS 324
EER R T+ L+ + DL + G +R VR+I +RNS
Sbjct: 153 EPVDNLSPEERDAR---------TVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNS 203
Query: 325 GVSRGFAFIDFPSV 338
S+G A+++F +
Sbjct: 204 RRSKGIAYVEFCEI 217
Score = 35.0 bits (79), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 289 IVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRI 348
+ V L TE+ L I +G + ++ ++K+ ++G S+G+ FI F AR ++++
Sbjct: 265 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 324
Query: 349 GDDGLVVDGRKL 360
+G + GR +
Sbjct: 325 --NGFELAGRPM 334
>sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia
GN=U2AF65B PE=2 SV=1
Length = 573
Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 289 IVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGA---ARAMM 345
I V GL TE + ++L +GPLR ++K+R +G S+G+AF + V A A +
Sbjct: 361 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDVSVTDIACAAL 420
Query: 346 D--RIGDDGLVV 355
+ ++GD L V
Sbjct: 421 NGIKMGDKTLTV 432
Score = 40.4 bits (93), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 438 GKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFH 497
G G GP + V GL Y E +R P++ LV+D+ T S+G+AF +
Sbjct: 350 GSAGGLEGPDRIFV-GGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQ 408
Query: 498 SVEDASKALEATNGTTL 514
V A A NG +
Sbjct: 409 DVSVTDIACAALNGIKM 425
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.130 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 426,857,208
Number of Sequences: 539616
Number of extensions: 20001547
Number of successful extensions: 75719
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1001
Number of HSP's successfully gapped in prelim test: 1155
Number of HSP's that attempted gapping in prelim test: 56307
Number of HSP's gapped (non-prelim): 10878
length of query: 1049
length of database: 191,569,459
effective HSP length: 128
effective length of query: 921
effective length of database: 122,498,611
effective search space: 112821220731
effective search space used: 112821220731
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 67 (30.4 bits)