Query 043164
Match_columns 1049
No_of_seqs 747 out of 4100
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 13:32:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043164.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043164hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01622 SF-CC1 splicing fact 100.0 3.7E-31 8E-36 314.6 27.8 180 283-528 86-265 (457)
2 TIGR01642 U2AF_lg U2 snRNP aux 100.0 1.8E-28 3.9E-33 295.5 32.7 192 283-529 172-375 (509)
3 TIGR01659 sex-lethal sex-letha 100.0 6.8E-28 1.5E-32 273.5 22.2 173 282-529 103-275 (346)
4 TIGR01645 half-pint poly-U bin 100.0 3E-27 6.4E-32 280.9 27.4 182 284-531 105-286 (612)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 4.6E-27 9.9E-32 270.1 27.6 240 285-529 2-349 (352)
6 TIGR01622 SF-CC1 splicing fact 99.9 6.1E-26 1.3E-30 270.0 31.2 234 285-528 185-447 (457)
7 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.8E-25 4E-30 269.4 32.7 194 286-528 295-501 (509)
8 KOG0148 Apoptosis-promoting RN 99.9 2.4E-26 5.2E-31 238.8 19.0 177 287-531 63-240 (321)
9 KOG0147 Transcriptional coacti 99.9 9.9E-25 2.1E-29 246.8 15.1 183 285-531 178-360 (549)
10 KOG0147 Transcriptional coacti 99.9 3.7E-24 8E-29 242.2 19.1 222 285-527 277-526 (549)
11 KOG0117 Heterogeneous nuclear 99.9 5.3E-24 1.2E-28 234.5 18.8 231 284-530 81-332 (506)
12 KOG0131 Splicing factor 3b, su 99.9 5.8E-24 1.3E-28 210.2 13.6 174 284-533 7-181 (203)
13 KOG0145 RNA-binding protein EL 99.9 3.8E-23 8.1E-28 213.2 19.0 236 287-529 42-358 (360)
14 KOG0144 RNA-binding protein CU 99.9 6.8E-24 1.5E-28 232.5 13.6 174 284-531 32-208 (510)
15 TIGR01628 PABP-1234 polyadenyl 99.9 9.7E-23 2.1E-27 248.6 20.8 166 288-529 2-167 (562)
16 TIGR01648 hnRNP-R-Q heterogene 99.9 1.1E-22 2.4E-27 241.9 18.3 232 285-530 57-308 (578)
17 TIGR01628 PABP-1234 polyadenyl 99.9 7.1E-22 1.5E-26 241.0 20.0 184 285-529 177-364 (562)
18 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 3.4E-21 7.3E-26 230.1 22.5 174 285-529 1-174 (481)
19 KOG0127 Nucleolar protein fibr 99.9 2.9E-21 6.2E-26 216.8 20.0 241 286-529 117-378 (678)
20 KOG0127 Nucleolar protein fibr 99.9 1.2E-21 2.7E-26 219.8 16.9 191 287-529 6-196 (678)
21 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 9.8E-21 2.1E-25 226.2 23.7 200 283-529 272-480 (481)
22 KOG0124 Polypyrimidine tract-b 99.9 2.5E-21 5.4E-26 207.5 16.3 178 286-529 113-290 (544)
23 KOG0109 RNA-binding protein LA 99.8 1.3E-20 2.9E-25 198.0 12.0 157 287-538 3-159 (346)
24 KOG0110 RNA-binding protein (R 99.8 9.7E-19 2.1E-23 203.1 13.9 173 288-529 517-693 (725)
25 TIGR01645 half-pint poly-U bin 99.8 4.3E-17 9.2E-22 194.6 27.2 82 285-368 203-284 (612)
26 KOG0154 RNA-binding protein RB 99.8 3.7E-18 8E-23 207.9 13.4 165 840-1041 408-573 (573)
27 KOG0123 Polyadenylate-binding 99.7 1.5E-17 3.2E-22 190.2 16.8 152 287-529 2-153 (369)
28 KOG0120 Splicing factor U2AF, 99.7 1.6E-17 3.4E-22 191.7 16.8 186 288-526 291-489 (500)
29 KOG0148 Apoptosis-promoting RN 99.7 2.5E-17 5.3E-22 172.1 11.4 140 284-530 4-143 (321)
30 KOG4206 Spliceosomal protein s 99.7 1.2E-15 2.6E-20 157.6 19.0 211 283-527 6-220 (221)
31 KOG0144 RNA-binding protein CU 99.7 2.4E-16 5.1E-21 173.7 13.6 83 447-531 424-506 (510)
32 KOG4205 RNA-binding protein mu 99.7 2E-16 4.3E-21 175.1 11.1 173 285-530 5-177 (311)
33 KOG0146 RNA-binding protein ET 99.7 8E-16 1.7E-20 159.9 14.4 239 285-529 18-365 (371)
34 KOG0123 Polyadenylate-binding 99.6 1.3E-15 2.9E-20 174.3 14.4 167 289-528 79-245 (369)
35 KOG0105 Alternative splicing f 99.6 1.3E-13 2.8E-18 136.9 17.4 181 284-524 4-185 (241)
36 PLN03134 glycine-rich RNA-bind 99.5 7.9E-14 1.7E-18 139.8 13.6 84 446-531 33-116 (144)
37 PLN03134 glycine-rich RNA-bind 99.5 4E-14 8.7E-19 141.9 11.5 82 284-367 32-113 (144)
38 KOG0124 Polypyrimidine tract-b 99.5 4.3E-13 9.4E-18 144.7 18.1 82 287-370 211-292 (544)
39 KOG1457 RNA binding protein (c 99.5 5.6E-13 1.2E-17 136.1 15.8 221 286-515 34-274 (284)
40 KOG1548 Transcription elongati 99.5 5.6E-13 1.2E-17 144.2 15.7 198 285-528 133-351 (382)
41 KOG0120 Splicing factor U2AF, 99.5 4.3E-13 9.3E-18 155.3 13.7 184 285-529 174-369 (500)
42 KOG4212 RNA-binding protein hn 99.5 5.6E-12 1.2E-16 139.2 21.4 228 286-525 44-290 (608)
43 KOG0110 RNA-binding protein (R 99.4 8.4E-13 1.8E-17 154.3 15.3 208 286-529 385-598 (725)
44 KOG0122 Translation initiation 99.4 2E-12 4.4E-17 134.3 11.8 82 446-529 188-269 (270)
45 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 1.3E-12 2.9E-17 150.3 11.7 81 284-366 267-347 (352)
46 PF00076 RRM_1: RNA recognitio 99.4 3.5E-12 7.6E-17 110.8 9.6 70 289-361 1-70 (70)
47 KOG4211 Splicing factor hnRNP- 99.3 1.3E-11 2.9E-16 139.3 15.7 170 285-526 9-179 (510)
48 KOG0132 RNA polymerase II C-te 99.3 6.2E-12 1.3E-16 147.6 11.9 75 283-365 418-492 (894)
49 KOG0106 Alternative splicing f 99.3 4.8E-12 1E-16 132.5 9.1 166 287-525 2-167 (216)
50 PF00076 RRM_1: RNA recognitio 99.3 1.2E-11 2.6E-16 107.4 10.1 70 450-522 1-70 (70)
51 COG0724 RNA-binding proteins ( 99.3 2.8E-11 6.2E-16 131.7 15.3 171 286-507 115-285 (306)
52 KOG0122 Translation initiation 99.3 6.6E-12 1.4E-16 130.5 9.1 79 285-365 188-266 (270)
53 TIGR01659 sex-lethal sex-letha 99.3 7.9E-12 1.7E-16 142.6 10.6 81 446-528 106-186 (346)
54 KOG0121 Nuclear cap-binding pr 99.3 4.9E-12 1.1E-16 119.2 7.0 82 282-365 32-113 (153)
55 PF14259 RRM_6: RNA recognitio 99.3 1.3E-11 2.7E-16 108.0 9.2 70 289-361 1-70 (70)
56 KOG0149 Predicted RNA-binding 99.3 4.4E-12 9.6E-17 131.5 7.1 77 286-365 12-88 (247)
57 KOG0126 Predicted RNA-binding 99.3 5.4E-13 1.2E-17 132.5 0.1 80 284-365 33-112 (219)
58 PF01585 G-patch: G-patch doma 99.3 4E-12 8.7E-17 101.2 4.6 45 973-1017 1-45 (45)
59 KOG0113 U1 small nuclear ribon 99.3 1.5E-11 3.1E-16 131.1 10.0 81 283-365 98-178 (335)
60 KOG1456 Heterogeneous nuclear 99.3 7.1E-11 1.5E-15 128.6 14.9 174 280-530 25-200 (494)
61 KOG4207 Predicted splicing fac 99.2 1.3E-11 2.9E-16 124.9 7.2 81 447-529 13-93 (256)
62 KOG4207 Predicted splicing fac 99.2 1.3E-11 2.9E-16 124.9 7.1 82 283-366 10-91 (256)
63 KOG0126 Predicted RNA-binding 99.2 1.7E-12 3.7E-17 129.0 0.6 83 447-531 35-117 (219)
64 KOG0107 Alternative splicing f 99.2 2.2E-11 4.9E-16 120.9 7.7 74 286-366 10-83 (195)
65 KOG0121 Nuclear cap-binding pr 99.2 2.4E-11 5.3E-16 114.5 7.4 79 446-526 35-113 (153)
66 PF14259 RRM_6: RNA recognitio 99.2 8.1E-11 1.8E-15 102.9 10.1 70 450-522 1-70 (70)
67 KOG1190 Polypyrimidine tract-b 99.2 4E-10 8.7E-15 124.3 16.9 191 286-528 297-490 (492)
68 KOG1190 Polypyrimidine tract-b 99.2 7.5E-10 1.6E-14 122.2 18.4 213 287-529 151-373 (492)
69 TIGR01648 hnRNP-R-Q heterogene 99.2 1E-10 2.2E-15 140.2 12.3 73 285-367 232-306 (578)
70 KOG0130 RNA-binding protein RB 99.2 3.7E-11 7.9E-16 114.1 6.2 81 284-366 70-150 (170)
71 PLN03120 nucleic acid binding 99.2 1E-10 2.2E-15 125.8 10.1 74 286-365 4-77 (260)
72 KOG0113 U1 small nuclear ribon 99.2 1.3E-10 2.9E-15 123.8 10.5 82 445-528 99-180 (335)
73 PLN03213 repressor of silencin 99.1 1.4E-10 3.1E-15 129.7 9.3 75 285-365 9-85 (759)
74 smart00362 RRM_2 RNA recogniti 99.1 3.2E-10 6.8E-15 97.6 9.6 72 288-363 1-72 (72)
75 smart00443 G_patch glycine ric 99.1 6.8E-11 1.5E-15 95.4 4.6 46 971-1016 1-46 (47)
76 PLN03120 nucleic acid binding 99.1 3E-10 6.5E-15 122.1 10.8 78 447-530 4-81 (260)
77 KOG0125 Ataxin 2-binding prote 99.1 1.5E-10 3.3E-15 124.8 8.3 77 286-366 96-172 (376)
78 KOG0130 RNA-binding protein RB 99.1 1.9E-10 4.2E-15 109.3 7.9 85 446-532 71-155 (170)
79 KOG0107 Alternative splicing f 99.1 2.3E-10 5.1E-15 113.7 8.7 78 447-531 10-87 (195)
80 smart00360 RRM RNA recognition 99.1 4E-10 8.6E-15 96.5 8.7 71 291-363 1-71 (71)
81 PLN03213 repressor of silencin 99.1 2.8E-10 6.2E-15 127.3 9.4 77 447-529 10-88 (759)
82 KOG0149 Predicted RNA-binding 99.1 2E-10 4.4E-15 119.4 6.7 79 447-528 12-90 (247)
83 KOG0114 Predicted RNA-binding 99.1 5E-10 1.1E-14 102.1 8.3 77 284-365 16-92 (124)
84 KOG4212 RNA-binding protein hn 99.0 8.1E-09 1.8E-13 114.6 18.3 73 447-526 536-608 (608)
85 PLN03121 nucleic acid binding 99.0 8.1E-10 1.8E-14 117.0 10.1 75 285-365 4-78 (243)
86 smart00362 RRM_2 RNA recogniti 99.0 1.3E-09 2.9E-14 93.7 9.7 71 449-523 1-71 (72)
87 KOG0111 Cyclophilin-type pepti 99.0 1.5E-10 3.3E-15 118.1 4.2 83 447-531 10-92 (298)
88 KOG0111 Cyclophilin-type pepti 99.0 1.6E-10 3.5E-15 117.9 4.2 84 283-368 7-90 (298)
89 KOG0108 mRNA cleavage and poly 99.0 5.5E-10 1.2E-14 129.3 8.1 78 287-366 19-96 (435)
90 cd00590 RRM RRM (RNA recogniti 99.0 2.2E-09 4.7E-14 92.9 10.0 74 288-364 1-74 (74)
91 KOG0114 Predicted RNA-binding 99.0 1.4E-09 3E-14 99.3 8.6 77 447-528 18-94 (124)
92 smart00360 RRM RNA recognition 99.0 1.4E-09 3E-14 93.1 8.4 71 452-524 1-71 (71)
93 KOG0125 Ataxin 2-binding prote 99.0 1.5E-09 3.2E-14 117.2 10.4 79 447-529 96-174 (376)
94 KOG0145 RNA-binding protein EL 99.0 8.9E-10 1.9E-14 115.0 8.1 80 448-529 42-121 (360)
95 KOG0965 Predicted RNA-binding 99.0 3.9E-10 8.4E-15 131.7 4.7 76 966-1045 898-975 (988)
96 KOG0131 Splicing factor 3b, su 99.0 7.4E-10 1.6E-14 110.8 5.8 79 447-527 9-87 (203)
97 KOG0132 RNA polymerase II C-te 98.9 6.3E-09 1.4E-13 122.9 13.6 75 447-529 421-495 (894)
98 COG0724 RNA-binding proteins ( 98.9 3.3E-09 7.2E-14 115.4 10.1 80 447-528 115-194 (306)
99 PLN03121 nucleic acid binding 98.9 3.9E-09 8.4E-14 111.9 10.0 76 447-528 5-80 (243)
100 cd00590 RRM RRM (RNA recogniti 98.9 7.5E-09 1.6E-13 89.4 10.2 74 449-525 1-74 (74)
101 KOG0117 Heterogeneous nuclear 98.9 4.6E-09 9.9E-14 117.5 10.7 83 446-529 82-164 (506)
102 KOG1456 Heterogeneous nuclear 98.9 1.9E-07 4.1E-12 102.3 22.5 225 282-529 116-363 (494)
103 KOG0108 mRNA cleavage and poly 98.9 3.1E-09 6.7E-14 123.2 8.1 80 448-529 19-98 (435)
104 PF13893 RRM_5: RNA recognitio 98.9 1E-08 2.2E-13 85.8 8.4 56 464-526 1-56 (56)
105 smart00361 RRM_1 RNA recogniti 98.9 8.8E-09 1.9E-13 90.5 8.2 61 461-523 2-69 (70)
106 smart00361 RRM_1 RNA recogniti 98.8 9.9E-09 2.1E-13 90.1 8.0 61 300-362 2-69 (70)
107 KOG1365 RNA-binding protein Fu 98.8 8.8E-09 1.9E-13 112.8 8.3 192 287-527 162-360 (508)
108 PF13893 RRM_5: RNA recognitio 98.8 1.6E-08 3.4E-13 84.7 7.8 56 303-365 1-56 (56)
109 KOG4211 Splicing factor hnRNP- 98.8 1.7E-07 3.6E-12 106.7 17.5 222 284-514 101-345 (510)
110 KOG0105 Alternative splicing f 98.8 8.1E-09 1.8E-13 103.3 6.0 79 446-529 5-83 (241)
111 KOG4206 Spliceosomal protein s 98.8 1.6E-08 3.4E-13 105.3 7.7 80 446-530 8-91 (221)
112 KOG0129 Predicted RNA-binding 98.7 9.4E-08 2E-12 109.5 14.2 170 284-508 257-432 (520)
113 KOG0112 Large RNA-binding prot 98.7 1E-08 2.2E-13 123.1 5.2 163 284-530 370-532 (975)
114 KOG0109 RNA-binding protein LA 98.7 1.9E-08 4.1E-13 107.2 6.6 72 449-530 4-75 (346)
115 KOG4454 RNA binding protein (R 98.7 4.1E-09 8.9E-14 108.1 1.4 144 284-514 7-150 (267)
116 KOG0415 Predicted peptidyl pro 98.7 2.2E-08 4.8E-13 108.7 6.4 83 444-528 236-318 (479)
117 KOG4208 Nucleolar RNA-binding 98.7 3.4E-08 7.4E-13 101.2 7.1 80 284-365 47-127 (214)
118 KOG0415 Predicted peptidyl pro 98.7 3.6E-08 7.7E-13 107.2 6.8 84 281-366 234-317 (479)
119 KOG0146 RNA-binding protein ET 98.6 6.1E-08 1.3E-12 101.9 5.7 81 282-364 281-361 (371)
120 KOG4210 Nuclear localization s 98.5 1E-07 2.2E-12 106.0 5.9 179 285-531 87-266 (285)
121 KOG2809 Telomerase elongation 98.5 1.2E-07 2.5E-12 104.4 5.7 53 968-1020 20-72 (326)
122 KOG4208 Nucleolar RNA-binding 98.5 2.8E-07 6E-12 94.7 7.9 82 446-529 48-130 (214)
123 KOG0226 RNA-binding proteins [ 98.4 2E-07 4.4E-12 98.0 5.1 167 287-525 97-266 (290)
124 KOG0153 Predicted RNA-binding 98.4 1E-06 2.2E-11 96.6 9.9 77 446-529 227-303 (377)
125 KOG1995 Conserved Zn-finger pr 98.4 5.6E-07 1.2E-11 99.5 7.8 139 284-424 64-247 (351)
126 PF12656 G-patch_2: DExH-box s 98.4 1.8E-07 3.8E-12 83.3 2.7 50 969-1018 25-74 (77)
127 KOG0128 RNA-binding protein SA 98.3 4.4E-08 9.5E-13 117.4 -2.8 146 286-526 667-812 (881)
128 KOG4661 Hsp27-ERE-TATA-binding 98.3 2.2E-06 4.7E-11 98.1 9.1 84 446-531 404-487 (940)
129 KOG0533 RRM motif-containing p 98.3 2.1E-06 4.6E-11 92.4 8.2 84 283-369 80-163 (243)
130 PF04059 RRM_2: RNA recognitio 98.3 4.7E-06 1E-10 77.5 9.3 77 287-365 2-84 (97)
131 KOG0153 Predicted RNA-binding 98.2 2.5E-06 5.5E-11 93.5 8.3 76 284-366 226-301 (377)
132 KOG4660 Protein Mei2, essentia 98.2 1.1E-06 2.5E-11 101.6 5.4 72 283-361 72-143 (549)
133 KOG2384 Major histocompatibili 98.2 1.2E-06 2.6E-11 89.0 4.4 50 970-1019 124-173 (223)
134 KOG4661 Hsp27-ERE-TATA-binding 98.2 3.2E-06 6.9E-11 96.7 7.7 82 284-367 403-484 (940)
135 PF04059 RRM_2: RNA recognitio 98.2 9.1E-06 2E-10 75.6 9.4 81 448-528 2-86 (97)
136 KOG2184 Tuftelin-interacting p 98.2 1E-06 2.2E-11 106.5 3.2 52 969-1020 111-162 (767)
137 KOG4205 RNA-binding protein mu 98.1 2.9E-06 6.3E-11 94.9 5.5 79 285-366 96-174 (311)
138 KOG3673 FtsJ-like RNA methyltr 98.1 1.6E-06 3.6E-11 99.1 3.0 47 973-1019 82-128 (845)
139 KOG0116 RasGAP SH3 binding pro 98.1 6.4E-06 1.4E-10 95.5 7.1 78 284-364 286-363 (419)
140 KOG4209 Splicing factor RNPS1, 98.0 7.4E-06 1.6E-10 88.4 5.6 80 283-365 98-177 (231)
141 KOG1457 RNA binding protein (c 98.0 6.7E-05 1.5E-09 77.8 11.7 85 445-529 32-118 (284)
142 KOG0533 RRM motif-containing p 97.9 2.1E-05 4.6E-10 84.8 8.2 80 447-529 83-162 (243)
143 KOG4307 RNA binding protein RB 97.9 3.2E-05 7E-10 90.9 10.1 199 287-526 312-511 (944)
144 KOG0226 RNA-binding proteins [ 97.9 7.7E-06 1.7E-10 86.3 4.4 80 284-365 188-267 (290)
145 KOG0116 RasGAP SH3 binding pro 97.8 4.4E-05 9.6E-10 88.6 7.8 79 448-529 289-367 (419)
146 KOG4676 Splicing factor, argin 97.8 3.4E-05 7.5E-10 85.6 6.4 201 287-515 8-214 (479)
147 KOG0151 Predicted splicing reg 97.8 4.8E-05 1E-09 89.9 7.7 80 284-365 172-254 (877)
148 KOG4454 RNA binding protein (R 97.8 1.1E-05 2.4E-10 83.4 1.9 75 447-525 9-83 (267)
149 KOG4660 Protein Mei2, essentia 97.7 1.7E-05 3.6E-10 92.2 3.6 71 445-522 73-143 (549)
150 KOG2185 Predicted RNA-processi 97.7 1.3E-05 2.8E-10 89.4 1.9 48 969-1016 292-339 (486)
151 KOG4209 Splicing factor RNPS1, 97.7 6.7E-05 1.5E-09 81.1 7.2 81 446-529 100-180 (231)
152 KOG0151 Predicted splicing reg 97.7 7.2E-05 1.6E-09 88.5 7.6 88 444-533 171-261 (877)
153 KOG1365 RNA-binding protein Fu 97.7 0.00047 1E-08 76.6 13.0 163 285-508 59-225 (508)
154 KOG1548 Transcription elongati 97.7 0.00011 2.4E-09 80.9 7.8 80 447-529 134-221 (382)
155 KOG2193 IGF-II mRNA-binding pr 97.6 6.9E-06 1.5E-10 91.6 -1.7 149 287-525 2-153 (584)
156 KOG0106 Alternative splicing f 97.6 8.1E-05 1.8E-09 78.7 5.3 73 449-531 3-75 (216)
157 KOG1996 mRNA splicing factor [ 97.5 5.4E-05 1.2E-09 81.2 3.1 46 975-1020 213-261 (378)
158 KOG1994 Predicted RNA binding 97.5 7.1E-05 1.5E-09 77.6 3.4 60 960-1019 67-129 (268)
159 KOG1995 Conserved Zn-finger pr 97.3 0.00015 3.4E-09 80.6 3.9 81 447-529 66-154 (351)
160 PF08777 RRM_3: RNA binding mo 97.1 0.00084 1.8E-08 63.9 6.0 72 287-364 2-76 (105)
161 PF08777 RRM_3: RNA binding mo 97.0 0.0014 3.1E-08 62.3 5.9 72 448-525 2-76 (105)
162 PF11608 Limkain-b1: Limkain b 96.9 0.0034 7.3E-08 56.3 7.2 68 287-366 3-75 (90)
163 PF11608 Limkain-b1: Limkain b 96.8 0.0036 7.8E-08 56.1 6.4 69 448-528 3-76 (90)
164 KOG2314 Translation initiation 96.8 0.0042 9E-08 72.5 8.6 78 445-524 56-139 (698)
165 KOG1996 mRNA splicing factor [ 96.6 0.0041 8.9E-08 67.2 6.9 80 446-527 280-365 (378)
166 COG5175 MOT2 Transcriptional r 96.6 0.0041 8.9E-08 68.2 6.5 81 447-529 114-203 (480)
167 KOG4210 Nuclear localization s 96.5 0.002 4.3E-08 72.1 4.1 79 284-365 182-261 (285)
168 KOG4849 mRNA cleavage factor I 96.4 0.0026 5.5E-08 70.0 3.7 76 288-365 82-159 (498)
169 KOG4307 RNA binding protein RB 96.4 0.0079 1.7E-07 71.6 7.6 76 448-525 868-943 (944)
170 KOG4315 G-patch nucleic acid b 96.3 0.0039 8.4E-08 70.6 4.4 49 969-1018 149-197 (455)
171 KOG0115 RNA-binding protein p5 96.3 0.024 5.1E-07 60.8 9.9 86 287-373 32-119 (275)
172 COG5175 MOT2 Transcriptional r 96.2 0.0088 1.9E-07 65.7 6.5 78 286-365 114-200 (480)
173 KOG4849 mRNA cleavage factor I 96.1 0.0046 1E-07 68.0 4.0 77 445-523 78-156 (498)
174 KOG0129 Predicted RNA-binding 96.1 0.024 5.1E-07 66.2 9.4 67 281-347 365-432 (520)
175 KOG0115 RNA-binding protein p5 96.1 0.011 2.5E-07 63.2 6.3 77 448-525 32-110 (275)
176 KOG4368 Predicted RNA binding 96.0 0.01 2.2E-07 69.5 6.3 8 26-33 389-396 (757)
177 PF14605 Nup35_RRM_2: Nup53/35 95.9 0.016 3.5E-07 48.1 5.5 52 448-506 2-53 (53)
178 KOG0128 RNA-binding protein SA 95.9 0.00068 1.5E-08 82.4 -3.9 162 287-514 572-734 (881)
179 PF14605 Nup35_RRM_2: Nup53/35 95.9 0.016 3.5E-07 48.1 5.1 52 287-345 2-53 (53)
180 KOG3152 TBP-binding protein, a 95.8 0.006 1.3E-07 65.2 3.1 74 285-360 73-158 (278)
181 KOG2202 U2 snRNP splicing fact 95.6 0.0057 1.2E-07 65.6 1.9 64 462-528 83-147 (260)
182 KOG2135 Proteins containing th 95.6 0.026 5.7E-07 65.0 7.1 71 449-528 374-445 (526)
183 KOG2314 Translation initiation 95.6 0.02 4.3E-07 67.0 6.2 77 285-364 57-140 (698)
184 KOG2416 Acinus (induces apopto 95.5 0.011 2.5E-07 69.3 4.0 79 444-528 441-521 (718)
185 PF05172 Nup35_RRM: Nup53/35/4 95.4 0.087 1.9E-06 49.7 8.9 79 447-528 6-91 (100)
186 KOG1855 Predicted RNA-binding 95.2 0.016 3.4E-07 66.0 3.9 65 284-348 229-306 (484)
187 KOG3152 TBP-binding protein, a 95.2 0.011 2.3E-07 63.3 2.3 68 447-514 74-153 (278)
188 KOG3263 Nucleic acid binding p 95.2 0.004 8.7E-08 62.3 -0.9 7 238-244 83-89 (196)
189 KOG1855 Predicted RNA-binding 95.2 0.025 5.5E-07 64.4 5.3 68 445-512 229-309 (484)
190 KOG2416 Acinus (induces apopto 94.2 0.042 9.1E-07 64.8 4.1 75 283-365 441-519 (718)
191 KOG0835 Cyclin L [General func 94.2 0.07 1.5E-06 59.2 5.5 10 61-70 199-208 (367)
192 PF05172 Nup35_RRM: Nup53/35/4 94.2 0.18 3.9E-06 47.5 7.5 76 286-365 6-89 (100)
193 KOG0112 Large RNA-binding prot 94.0 0.064 1.4E-06 66.3 5.2 80 282-369 451-532 (975)
194 PF15023 DUF4523: Protein of u 93.8 0.23 5E-06 49.0 7.6 71 446-526 85-159 (166)
195 PF08952 DUF1866: Domain of un 93.7 0.24 5.3E-06 49.5 7.7 72 282-364 23-103 (146)
196 KOG2202 U2 snRNP splicing fact 92.9 0.058 1.2E-06 58.1 2.1 61 302-365 84-145 (260)
197 PF08952 DUF1866: Domain of un 92.9 0.55 1.2E-05 47.1 8.8 72 446-528 26-106 (146)
198 PF08675 RNA_bind: RNA binding 92.4 0.49 1.1E-05 42.7 7.0 56 447-511 9-64 (87)
199 PF03467 Smg4_UPF3: Smg-4/UPF3 92.4 0.24 5.2E-06 51.7 6.0 69 447-515 7-81 (176)
200 KOG2138 Predicted RNA binding 91.9 0.076 1.6E-06 63.7 1.7 21 973-993 147-167 (883)
201 PF10309 DUF2414: Protein of u 90.5 1 2.3E-05 38.6 6.7 54 448-509 6-62 (62)
202 PF07576 BRAP2: BRCA1-associat 90.1 3.7 8.1E-05 39.5 11.0 80 447-528 13-94 (110)
203 PF03467 Smg4_UPF3: Smg-4/UPF3 89.4 0.41 8.9E-06 50.0 4.3 79 285-365 6-95 (176)
204 PF08648 DUF1777: Protein of u 88.6 1.5 3.2E-05 46.0 7.8 6 331-336 134-139 (180)
205 PF15023 DUF4523: Protein of u 87.7 1.8 3.9E-05 43.0 7.1 72 283-364 83-158 (166)
206 KOG4574 RNA-binding protein (c 87.6 0.34 7.4E-06 59.7 2.6 80 444-529 283-374 (1007)
207 KOG0154 RNA-binding protein RB 87.2 0.69 1.5E-05 57.3 5.0 75 291-365 2-80 (573)
208 KOG1994 Predicted RNA binding 86.2 0.29 6.3E-06 51.6 0.8 47 973-1019 37-83 (268)
209 PF10309 DUF2414: Protein of u 86.0 2.9 6.3E-05 35.9 6.6 54 287-348 6-62 (62)
210 PF04847 Calcipressin: Calcipr 85.9 1.6 3.5E-05 45.9 6.1 62 460-529 8-71 (184)
211 KOG2253 U1 snRNP complex, subu 85.3 1 2.2E-05 54.5 4.8 72 443-525 36-107 (668)
212 KOG2253 U1 snRNP complex, subu 85.2 0.57 1.2E-05 56.6 2.7 74 280-364 34-107 (668)
213 KOG2135 Proteins containing th 85.1 0.47 1E-05 55.1 1.9 72 285-365 371-443 (526)
214 PF08675 RNA_bind: RNA binding 85.1 2.5 5.4E-05 38.4 6.0 52 288-348 11-62 (87)
215 KOG2193 IGF-II mRNA-binding pr 84.8 0.78 1.7E-05 52.5 3.3 74 448-529 2-76 (584)
216 PF07576 BRAP2: BRCA1-associat 84.0 5.4 0.00012 38.4 8.3 67 287-357 14-81 (110)
217 KOG2068 MOT2 transcription fac 83.8 0.33 7.2E-06 54.4 -0.0 80 448-529 78-163 (327)
218 KOG2068 MOT2 transcription fac 83.4 0.55 1.2E-05 52.7 1.5 77 287-365 78-160 (327)
219 KOG2548 SWAP mRNA splicing reg 82.5 0.66 1.4E-05 54.3 1.7 7 32-38 164-170 (653)
220 PF04847 Calcipressin: Calcipr 81.6 3.5 7.6E-05 43.4 6.5 59 299-365 8-68 (184)
221 PF03880 DbpA: DbpA RNA bindin 80.5 7.7 0.00017 34.4 7.5 66 449-526 2-74 (74)
222 KOG4285 Mitotic phosphoprotein 79.7 6.4 0.00014 43.7 7.8 73 448-529 198-270 (350)
223 KOG0804 Cytoplasmic Zn-finger 79.1 6.4 0.00014 45.9 8.0 79 447-527 74-154 (493)
224 KOG0804 Cytoplasmic Zn-finger 79.0 4.4 9.4E-05 47.3 6.6 70 284-357 72-142 (493)
225 KOG1847 mRNA splicing factor [ 77.3 1.8 3.9E-05 52.0 3.1 13 288-300 847-859 (878)
226 KOG2591 c-Mpl binding protein, 77.2 3.3 7.1E-05 49.3 5.0 73 285-364 174-248 (684)
227 KOG2591 c-Mpl binding protein, 74.1 3.8 8.2E-05 48.7 4.5 70 447-523 175-246 (684)
228 PF03880 DbpA: DbpA RNA bindin 73.6 11 0.00023 33.5 6.4 59 296-365 11-74 (74)
229 PF10567 Nab6_mRNP_bdg: RNA-re 72.2 39 0.00086 37.7 11.4 80 286-365 15-105 (309)
230 PF11767 SET_assoc: Histone ly 72.1 13 0.00029 32.4 6.4 55 297-362 11-65 (66)
231 KOG4285 Mitotic phosphoprotein 71.8 6.1 0.00013 43.9 5.2 71 286-366 197-268 (350)
232 PF07292 NID: Nmi/IFP 35 domai 67.4 4.9 0.00011 37.0 2.9 33 331-364 1-33 (88)
233 KOG4198 RNA-binding Ran Zn-fin 67.1 3.1 6.8E-05 46.2 1.8 35 390-424 134-168 (280)
234 KOG4574 RNA-binding protein (c 64.0 4.8 0.0001 50.2 2.7 71 288-366 300-372 (1007)
235 PF00641 zf-RanBP: Zn-finger i 63.4 3.4 7.4E-05 29.9 0.9 28 394-421 2-29 (30)
236 PF02956 TT_ORF1: TT viral orf 62.7 6.5 0.00014 48.1 3.6 21 328-348 109-129 (525)
237 smart00547 ZnF_RBZ Zinc finger 60.6 5.3 0.00012 27.8 1.4 25 395-419 1-25 (26)
238 KOG2950 Uncharacterized protei 58.6 3.9 8.6E-05 46.1 0.7 48 598-647 292-339 (348)
239 KOG2318 Uncharacterized conser 56.3 52 0.0011 39.9 9.2 83 444-526 171-305 (650)
240 KOG2318 Uncharacterized conser 53.0 33 0.00071 41.5 6.9 80 283-364 171-304 (650)
241 PF15232 DUF4585: Domain of un 48.5 15 0.00033 32.5 2.5 32 600-633 10-41 (75)
242 PF00397 WW: WW domain; Inter 46.4 17 0.00037 26.5 2.2 18 625-642 8-25 (31)
243 PF10567 Nab6_mRNP_bdg: RNA-re 45.0 39 0.00084 37.8 5.5 84 446-529 14-108 (309)
244 KOG2891 Surface glycoprotein [ 44.5 10 0.00022 41.3 1.1 64 285-348 148-242 (445)
245 KOG2295 C2H2 Zn-finger protein 40.7 9 0.0002 45.8 -0.1 69 446-514 230-298 (648)
246 KOG3580 Tight junction protein 38.6 63 0.0014 39.2 6.3 11 518-528 541-551 (1027)
247 KOG4019 Calcineurin-mediated s 36.3 35 0.00075 35.6 3.3 74 449-529 12-90 (193)
248 COG5638 Uncharacterized conser 31.0 1.4E+02 0.0029 34.8 7.1 84 443-526 142-295 (622)
249 PF11767 SET_assoc: Histone ly 30.9 2.1E+02 0.0046 25.0 6.8 48 459-515 12-59 (66)
250 PF15337 Vasculin: Vascular pr 30.4 24 0.00053 32.6 1.0 13 977-989 12-24 (97)
251 PF07808 RED_N: RED-like prote 30.2 24 0.00053 38.7 1.2 19 896-914 20-38 (238)
252 PF03468 XS: XS domain; Inter 28.3 82 0.0018 30.7 4.3 48 449-499 10-66 (116)
253 PF15232 DUF4585: Domain of un 26.7 42 0.00091 29.9 1.8 16 634-649 32-47 (75)
254 KOG4410 5-formyltetrahydrofola 25.8 1.6E+02 0.0034 32.8 6.2 50 445-500 328-378 (396)
255 TIGR03696 Rhs_assc_core RHS re 25.1 50 0.0011 29.4 2.0 29 607-637 21-49 (76)
256 KOG1295 Nonsense-mediated deca 23.9 79 0.0017 36.7 3.8 67 287-355 8-77 (376)
257 KOG2891 Surface glycoprotein [ 23.8 38 0.00081 37.2 1.2 70 459-528 173-267 (445)
258 PF03468 XS: XS domain; Inter 22.7 83 0.0018 30.7 3.2 50 288-340 10-68 (116)
259 PF07530 PRE_C2HC: Associated 22.4 1.4E+02 0.003 26.3 4.2 63 462-529 2-65 (68)
260 TIGR03836 termin_org_HMW1 cyta 20.7 69 0.0015 28.1 1.9 27 601-627 37-66 (82)
261 KOG4483 Uncharacterized conser 20.2 1.8E+02 0.0039 33.9 5.5 54 287-347 392-446 (528)
262 KOG4483 Uncharacterized conser 20.0 1.7E+02 0.0036 34.1 5.3 55 447-508 391-446 (528)
No 1
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.98 E-value=3.7e-31 Score=314.63 Aligned_cols=180 Identities=32% Similarity=0.495 Sum_probs=154.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEE
Q 043164 283 VAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFF 362 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V 362 (1049)
..+.++|||+|||..+|+++|+++|+.||.|.+|.|+.|+.+|.++|||||+|.+.++|.+||. | +|..|.|++|.|
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l--~g~~~~g~~i~v 162 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-L--TGQMLLGRPIIV 162 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-h--CCCEECCeeeEE
Confidence 4567899999999999999999999999999999999999999999999999999999999995 6 999999999999
Q ss_pred eecCCCCCCCCCCCCccccccccccCCCCCCCCccccccccccccccccccccccCCCCCCCCcccCCCCCCCCCCCCCC
Q 043164 363 EYSSKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKGS 442 (1049)
Q Consensus 363 ~~A~~p~~~~~~~~~~~~~~~~~~~~~r~~~p~dw~~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 442 (1049)
.++....... .. . .... . .
T Consensus 163 ~~~~~~~~~~------------------------------------~~-----~--~~~~---------~---------~ 181 (457)
T TIGR01622 163 QSSQAEKNRA------------------------------------AK-----A--ATHQ---------P---------G 181 (457)
T ss_pred eecchhhhhh------------------------------------hh-----c--cccc---------C---------C
Confidence 8752111000 00 0 0000 0 0
Q ss_pred CCCCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEE
Q 043164 443 DTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILR 522 (1049)
Q Consensus 443 ~~~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~ 522 (1049)
....+.+|||+|||..+++++|+++|++||.|..|.|+.+..+|.++|||||+|.+.++|.+|+..|||..| +|+.|+
T Consensus 182 ~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i--~g~~i~ 259 (457)
T TIGR01622 182 DIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFEL--AGRPIK 259 (457)
T ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEE--CCEEEE
Confidence 001257999999999999999999999999999999999999999999999999999999999999999888 799999
Q ss_pred EEEeec
Q 043164 523 VAYAKS 528 (1049)
Q Consensus 523 V~~Ak~ 528 (1049)
|.||..
T Consensus 260 v~~a~~ 265 (457)
T TIGR01622 260 VGYAQD 265 (457)
T ss_pred EEEccC
Confidence 999884
No 2
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.97 E-value=1.8e-28 Score=295.53 Aligned_cols=192 Identities=18% Similarity=0.249 Sum_probs=141.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhc------------CCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcC
Q 043164 283 VAPSGTIVVKGLSQKTTEEDLYQILAEW------------GPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGD 350 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~~~tee~L~~~F~~~------------G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ 350 (1049)
....++|||+|||+.+|+++|.++|..+ ++|..|.+ +..+|||||+|.+.++|..|| .|
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al-~l-- 242 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAM-AL-- 242 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhh-cC--
Confidence 3456799999999999999999999875 23444444 345789999999999999999 58
Q ss_pred CCeeeCCeeEEEeecCCCCCCCCCCCCccccccccccCCCCCCCCccccccccccccccccccccccCCCCCCCCcccCC
Q 043164 351 DGLVVDGRKLFFEYSSKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMN 430 (1049)
Q Consensus 351 ng~~i~Gr~i~V~~A~~p~~~~~~~~~~~~~~~~~~~~~r~~~p~dw~~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~ 430 (1049)
+|+.|.|+.|+|.....-.. .+..... .....+..+ ......
T Consensus 243 ~g~~~~g~~l~v~r~~~~~~---~~~~~~~--------~~~~~~~~~--------------------~~~~~~------- 284 (509)
T TIGR01642 243 DSIIYSNVFLKIRRPHDYIP---VPQITPE--------VSQKNPDDN--------------------AKNVEK------- 284 (509)
T ss_pred CCeEeeCceeEecCccccCC---ccccCCC--------CCCCCCccc--------------------cccccc-------
Confidence 99999999999975311000 0000000 000000000 000000
Q ss_pred CCCCCCCCCCCCCCCCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhC
Q 043164 431 SSNPIPLGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATN 510 (1049)
Q Consensus 431 ~s~~~~~~~~~~~~~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~Ln 510 (1049)
...........++|||+|||..+++++|+++|+.||.|..|.|+++..+|.++|||||+|.+.++|..||..||
T Consensus 285 ------~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~ 358 (509)
T TIGR01642 285 ------LVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALN 358 (509)
T ss_pred ------ccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcC
Confidence 00000111245799999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeccCCeEEEEEEeecC
Q 043164 511 GTTLEKNGQILRVAYAKSI 529 (1049)
Q Consensus 511 G~~~~i~Gr~L~V~~Ak~k 529 (1049)
|..| +|+.|.|.+|...
T Consensus 359 g~~~--~~~~l~v~~a~~~ 375 (509)
T TIGR01642 359 GKDT--GDNKLHVQRACVG 375 (509)
T ss_pred CCEE--CCeEEEEEECccC
Confidence 9999 7999999998654
No 3
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.96 E-value=6.8e-28 Score=273.47 Aligned_cols=173 Identities=27% Similarity=0.459 Sum_probs=156.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEE
Q 043164 282 AVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLF 361 (1049)
Q Consensus 282 ~~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~ 361 (1049)
.....++|||+|||.++|+++|+++|+.||+|++|+|+.|+.++.++|||||+|.+.++|.+||+.| +++.|.+++|+
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~L--nG~~l~gr~i~ 180 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNL--NGITVRNKRLK 180 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHc--CCCccCCceee
Confidence 3356789999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred EeecCCCCCCCCCCCCccccccccccCCCCCCCCccccccccccccccccccccccCCCCCCCCcccCCCCCCCCCCCCC
Q 043164 362 FEYSSKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKG 441 (1049)
Q Consensus 362 V~~A~~p~~~~~~~~~~~~~~~~~~~~~r~~~p~dw~~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 441 (1049)
|.++.... .
T Consensus 181 V~~a~p~~----------------------------------------------------~------------------- 189 (346)
T TIGR01659 181 VSYARPGG----------------------------------------------------E------------------- 189 (346)
T ss_pred eecccccc----------------------------------------------------c-------------------
Confidence 99862100 0
Q ss_pred CCCCCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEE
Q 043164 442 SDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQIL 521 (1049)
Q Consensus 442 ~~~~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L 521 (1049)
.....+|||+|||..+++++|+++|++||.|+.|.|++|+.++.++|||||+|.+.++|++||+.||+..|...++.|
T Consensus 190 --~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l 267 (346)
T TIGR01659 190 --SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPL 267 (346)
T ss_pred --ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeE
Confidence 001247999999999999999999999999999999999999999999999999999999999999999886556899
Q ss_pred EEEEeecC
Q 043164 522 RVAYAKSI 529 (1049)
Q Consensus 522 ~V~~Ak~k 529 (1049)
+|.+|+..
T Consensus 268 ~V~~a~~~ 275 (346)
T TIGR01659 268 TVRLAEEH 275 (346)
T ss_pred EEEECCcc
Confidence 99999875
No 4
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.96 E-value=3e-27 Score=280.88 Aligned_cols=182 Identities=20% Similarity=0.344 Sum_probs=156.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEe
Q 043164 284 APSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFE 363 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~ 363 (1049)
...++|||+|||+.+++++|+++|..||+|.+|.|+.|+.||.++|||||+|.+.++|..||+.| ||..|+|+.|+|.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~l--nG~~i~GR~IkV~ 182 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQM--NGQMLGGRNIKVG 182 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhc--CCeEEecceeeec
Confidence 45679999999999999999999999999999999999999999999999999999999999999 9999999999998
Q ss_pred ecCCCCCCCCCCCCccccccccccCCCCCCCCccccccccccccccccccccccCCCCCCCCcccCCCCCCCCCCCCCCC
Q 043164 364 YSSKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKGSD 443 (1049)
Q Consensus 364 ~A~~p~~~~~~~~~~~~~~~~~~~~~r~~~p~dw~~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 443 (1049)
+...... .. ...++. ...
T Consensus 183 rp~~~p~------a~--------------~~~~~~------------------------------------------~~~ 200 (612)
T TIGR01645 183 RPSNMPQ------AQ--------------PIIDMV------------------------------------------QEE 200 (612)
T ss_pred ccccccc------cc--------------cccccc------------------------------------------ccc
Confidence 6311000 00 000000 000
Q ss_pred CCCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEE
Q 043164 444 TGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRV 523 (1049)
Q Consensus 444 ~~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V 523 (1049)
.....+|||+||+..+++++|+++|+.||.|..|+|++|+.++.++|||||+|.+.++|.+||..|||..| +|+.|+|
T Consensus 201 ~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~el--gGr~LrV 278 (612)
T TIGR01645 201 AKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDL--GGQYLRV 278 (612)
T ss_pred ccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCee--CCeEEEE
Confidence 01246899999999999999999999999999999999999999999999999999999999999999999 8999999
Q ss_pred EEeecCCC
Q 043164 524 AYAKSILG 531 (1049)
Q Consensus 524 ~~Ak~k~~ 531 (1049)
.++..++.
T Consensus 279 ~kAi~pP~ 286 (612)
T TIGR01645 279 GKCVTPPD 286 (612)
T ss_pred EecCCCcc
Confidence 99987543
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.95 E-value=4.6e-27 Score=270.06 Aligned_cols=240 Identities=18% Similarity=0.334 Sum_probs=160.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEee
Q 043164 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEY 364 (1049)
Q Consensus 285 ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~ 364 (1049)
+..+|||+|||..+||++|+++|+.||+|.+|+|++|+.+|.++|||||+|.+.++|.+||+.| ||..|.|+.|.|.+
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l--~g~~l~g~~i~v~~ 79 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSL--NGLRLQNKTIKVSY 79 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhc--ccEEECCeeEEEEe
Confidence 3579999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cCCCCCCC--------CCCCC-ccc-----cccccc-----------------------------------cCCCCCCCC
Q 043164 365 SSKPTGGS--------GGHYG-QES-----AMGARH-----------------------------------SNHKSTIPC 395 (1049)
Q Consensus 365 A~~p~~~~--------~~~~~-~~~-----~~~~~~-----------------------------------~~~r~~~p~ 395 (1049)
+....... ..+.. .+. +...+. ++... ...
T Consensus 80 a~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~-~~g 158 (352)
T TIGR01661 80 ARPSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTT-PSG 158 (352)
T ss_pred ecccccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCc-cCC
Confidence 74222110 00000 000 000000 00000 000
Q ss_pred cccccccccccccc--ccccccc-----cCCCCC----------------------------------------------
Q 043164 396 DWMCTICGCVNFAR--RTSCFQC-----NEARTD---------------------------------------------- 422 (1049)
Q Consensus 396 dw~~~~~~~~n~~~--r~~~~~~-----~~~~~~---------------------------------------------- 422 (1049)
......+...+... ....... ..+...
T Consensus 159 ~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (352)
T TIGR01661 159 CTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQ 238 (352)
T ss_pred CceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccc
Confidence 00000000000000 0000000 000000
Q ss_pred -----CCCcccCCCCCCCCCCC-CCCCCCCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEe
Q 043164 423 -----DAPPAEMNSSNPIPLGK-KGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHF 496 (1049)
Q Consensus 423 -----~~~~~~~~~s~~~~~~~-~~~~~~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF 496 (1049)
..+.......+....+. .......+.+|||+|||+.+++++|+++|++||.|..|+|++|..|+.++|||||+|
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F 318 (352)
T TIGR01661 239 HAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSM 318 (352)
T ss_pred cccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEE
Confidence 00000000000000000 011123345799999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhCCCeeccCCeEEEEEEeecC
Q 043164 497 HSVEDASKALEATNGTTLEKNGQILRVAYAKSI 529 (1049)
Q Consensus 497 ~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~Ak~k 529 (1049)
.+.++|.+||..|||..| +|+.|+|.|+.++
T Consensus 319 ~~~~~A~~Ai~~lnG~~~--~gr~i~V~~~~~~ 349 (352)
T TIGR01661 319 TNYDEAAMAILSLNGYTL--GNRVLQVSFKTNK 349 (352)
T ss_pred CCHHHHHHHHHHhCCCEE--CCeEEEEEEccCC
Confidence 999999999999999999 7999999998776
No 6
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.95 E-value=6.1e-26 Score=269.99 Aligned_cols=234 Identities=19% Similarity=0.236 Sum_probs=150.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEee
Q 043164 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEY 364 (1049)
Q Consensus 285 ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~ 364 (1049)
...+|||+|||..+|+++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..| +|+.|.|+.|.|.|
T Consensus 185 ~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l--~g~~i~g~~i~v~~ 262 (457)
T TIGR01622 185 NFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVM--NGFELAGRPIKVGY 262 (457)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhc--CCcEECCEEEEEEE
Confidence 3689999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cCCCCCCCCCCCCccccccccccCCCC---------CCCCccc------ccccc--cccccccc--ccccccCCCCCCCC
Q 043164 365 SSKPTGGSGGHYGQESAMGARHSNHKS---------TIPCDWM------CTICG--CVNFARRT--SCFQCNEARTDDAP 425 (1049)
Q Consensus 365 A~~p~~~~~~~~~~~~~~~~~~~~~r~---------~~p~dw~------~~~~~--~~n~~~r~--~~~~~~~~~~~~~~ 425 (1049)
+.......................... .....+. .+... ...+.... .......+....
T Consensus 263 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 340 (457)
T TIGR01622 263 AQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYA-- 340 (457)
T ss_pred ccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhcccccccccccccccccc--
Confidence 753221110000000000000000000 0000000 00000 00000000 000000000000
Q ss_pred cccCCCCCCCCCCCCCCCCCCcceEEEeCCCccCc----------HHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEE
Q 043164 426 PAEMNSSNPIPLGKKGSDTGPTHVLVVRGLDEYAD----------EEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLH 495 (1049)
Q Consensus 426 ~~~~~~s~~~~~~~~~~~~~ps~~LfV~NLp~~~t----------eedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVe 495 (1049)
...+................++.+|+|.||....+ .++|+++|++||.|+.|.|... .+.|++||+
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~----~~~G~~fV~ 416 (457)
T TIGR01622 341 TGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTK----NSAGKIYLK 416 (457)
T ss_pred ccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCC----CCceeEEEE
Confidence 00000000000001111235688999999966544 3679999999999999999743 367999999
Q ss_pred eCCHHHHHHHHHHhCCCeeccCCeEEEEEEeec
Q 043164 496 FHSVEDASKALEATNGTTLEKNGQILRVAYAKS 528 (1049)
Q Consensus 496 F~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~Ak~ 528 (1049)
|.++++|.+|++.|||..| +|+.|.|.|...
T Consensus 417 F~~~e~A~~A~~~lnGr~f--~gr~i~~~~~~~ 447 (457)
T TIGR01622 417 FSSVDAALAAFQALNGRYF--GGKMITAAFVVN 447 (457)
T ss_pred ECCHHHHHHHHHHhcCccc--CCeEEEEEEEcH
Confidence 9999999999999999999 899999999654
No 7
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=1.8e-25 Score=269.39 Aligned_cols=194 Identities=21% Similarity=0.323 Sum_probs=147.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEeec
Q 043164 286 SGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYS 365 (1049)
Q Consensus 286 s~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~A 365 (1049)
..+|||+|||..+|+++|.++|+.||+|..|.|+++..+|.++|||||+|.+.++|..||+.| +|+.|.|+.|.|.++
T Consensus 295 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l--~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 295 KDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAAL--NGKDTGDNKLHVQRA 372 (509)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHc--CCCEECCeEEEEEEC
Confidence 468999999999999999999999999999999999999999999999999999999999999 999999999999997
Q ss_pred CCCCCCCCCCCCccccccccccCCCCCCCCccccccccccccccccccccccCCCCCCCCcccCCCCCCCCCCCCCCCCC
Q 043164 366 SKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKGSDTG 445 (1049)
Q Consensus 366 ~~p~~~~~~~~~~~~~~~~~~~~~r~~~p~dw~~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 445 (1049)
....... .. . .... .. +.... ...+. . ........
T Consensus 373 ~~~~~~~-~~-~---------------~~~~-~~-------------------~~~~~--~~~~~---~---~~~~~~~~ 407 (509)
T TIGR01642 373 CVGANQA-TI-D---------------TSNG-MA-------------------PVTLL--AKALS---Q---SILQIGGK 407 (509)
T ss_pred ccCCCCC-Cc-c---------------cccc-cc-------------------ccccc--cccch---h---hhccccCC
Confidence 3211000 00 0 0000 00 00000 00000 0 00001123
Q ss_pred CcceEEEeCCCccC----------cHHHHHHHhhccCCeeeEEEeecC---CCCceeeEEEEEeCCHHHHHHHHHHhCCC
Q 043164 446 PTHVLVVRGLDEYA----------DEEMLRYEFSKHAPIKDLRLVRDK---FTHVSRGFAFLHFHSVEDASKALEATNGT 512 (1049)
Q Consensus 446 ps~~LfV~NLp~~~----------teedLre~Fs~fG~I~~v~I~rD~---~tg~SrGfAFVeF~s~e~A~kAl~~LnG~ 512 (1049)
++.+|+|.||...- ..++|+++|++||.|+.|.|+++. .++.+.|+|||+|.++++|.+||.+|||.
T Consensus 408 ~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr 487 (509)
T TIGR01642 408 PTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGR 487 (509)
T ss_pred CceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCC
Confidence 67899999996431 236799999999999999999753 34567899999999999999999999999
Q ss_pred eeccCCeEEEEEEeec
Q 043164 513 TLEKNGQILRVAYAKS 528 (1049)
Q Consensus 513 ~~~i~Gr~L~V~~Ak~ 528 (1049)
.| +|+.|.|.|...
T Consensus 488 ~~--~gr~v~~~~~~~ 501 (509)
T TIGR01642 488 KF--NDRVVVAAFYGE 501 (509)
T ss_pred EE--CCeEEEEEEeCH
Confidence 99 799999999643
No 8
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=2.4e-26 Score=238.81 Aligned_cols=177 Identities=24% Similarity=0.477 Sum_probs=151.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEeecC
Q 043164 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYSS 366 (1049)
Q Consensus 287 ~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~A~ 366 (1049)
.-|||+.|...++.++|++.|.+||+|.+++|++|..|+++|||+||.|.+.++|+.||..| ||.+|++|.|+-+||+
T Consensus 63 fhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~M--nGqWlG~R~IRTNWAT 140 (321)
T KOG0148|consen 63 FHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQM--NGQWLGRRTIRTNWAT 140 (321)
T ss_pred eeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHh--CCeeeccceeeccccc
Confidence 46999999999999999999999999999999999999999999999999999999999999 9999999999999986
Q ss_pred CCCCCC-CCCCCccccccccccCCCCCCCCccccccccccccccccccccccCCCCCCCCcccCCCCCCCCCCCCCCCCC
Q 043164 367 KPTGGS-GGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKGSDTG 445 (1049)
Q Consensus 367 ~p~~~~-~~~~~~~~~~~~~~~~~r~~~p~dw~~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 445 (1049)
+..... ..++.-++ +.| ....
T Consensus 141 RKp~e~n~~~ltfde-----------------------V~N-----------------------------------Qssp 162 (321)
T KOG0148|consen 141 RKPSEMNGKPLTFDE-----------------------VYN-----------------------------------QSSP 162 (321)
T ss_pred cCccccCCCCccHHH-----------------------Hhc-----------------------------------cCCC
Confidence 432111 00000000 000 0011
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~ 525 (1049)
..++|||+||+..++|++|++.|++||+|.+|+|.+++ ||+||.|.+.|.|.+||..|||..| +|..|++.|
T Consensus 163 ~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q------GYaFVrF~tkEaAahAIv~mNntei--~G~~VkCsW 234 (321)
T KOG0148|consen 163 DNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ------GYAFVRFETKEAAAHAIVQMNNTEI--GGQLVRCSW 234 (321)
T ss_pred CCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc------ceEEEEecchhhHHHHHHHhcCcee--CceEEEEec
Confidence 35689999999999999999999999999999999985 8999999999999999999999999 799999999
Q ss_pred eecCCC
Q 043164 526 AKSILG 531 (1049)
Q Consensus 526 Ak~k~~ 531 (1049)
.|....
T Consensus 235 GKe~~~ 240 (321)
T KOG0148|consen 235 GKEGDD 240 (321)
T ss_pred cccCCC
Confidence 887543
No 9
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.92 E-value=9.9e-25 Score=246.79 Aligned_cols=183 Identities=28% Similarity=0.420 Sum_probs=152.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEee
Q 043164 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEY 364 (1049)
Q Consensus 285 ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~ 364 (1049)
..++||+-.|+..+++.+|.+||+.+|.|.+|+||.|+.++.++|.|||+|.+.+....|| .| .|..+.|.+|.|..
T Consensus 178 d~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aL--sGqrllg~pv~vq~ 254 (549)
T KOG0147|consen 178 DQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-AL--SGQRLLGVPVIVQL 254 (549)
T ss_pred hHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hh--cCCcccCceeEecc
Confidence 3468999999999999999999999999999999999999999999999999999999999 66 99999999999987
Q ss_pred cCCCCCCCCCCCCccccccccccCCCCCCCCccccccccccccccccccccccCCCCCCCCcccCCCCCCCCCCCCCCCC
Q 043164 365 SSKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKGSDT 444 (1049)
Q Consensus 365 A~~p~~~~~~~~~~~~~~~~~~~~~r~~~p~dw~~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 444 (1049)
...... . .+....| .......
T Consensus 255 sEaekn--------------r-----~a~~s~a----------------------------------------~~~k~~~ 275 (549)
T KOG0147|consen 255 SEAEKN--------------R-----AANASPA----------------------------------------LQGKGFT 275 (549)
T ss_pred cHHHHH--------------H-----HHhcccc----------------------------------------ccccccc
Confidence 311000 0 0000000 0001122
Q ss_pred CCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEE
Q 043164 445 GPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVA 524 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~ 524 (1049)
+|-..|||+||.+++++++|+.+|++||.|..|.+++|..||.++||+||+|.+.++|.+|+..|||..| .|+.|+|.
T Consensus 276 ~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfel--AGr~ikV~ 353 (549)
T KOG0147|consen 276 GPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFEL--AGRLIKVS 353 (549)
T ss_pred cchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhcccee--cCceEEEE
Confidence 3444599999999999999999999999999999999999999999999999999999999999999666 79999999
Q ss_pred EeecCCC
Q 043164 525 YAKSILG 531 (1049)
Q Consensus 525 ~Ak~k~~ 531 (1049)
.......
T Consensus 354 ~v~~r~~ 360 (549)
T KOG0147|consen 354 VVTERVD 360 (549)
T ss_pred Eeeeecc
Confidence 8766543
No 10
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.92 E-value=3.7e-24 Score=242.19 Aligned_cols=222 Identities=20% Similarity=0.323 Sum_probs=150.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEee
Q 043164 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEY 364 (1049)
Q Consensus 285 ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~ 364 (1049)
|-..|||+||.+++||++|+.+|++||.|..|.+++|..||.++||+||+|.+.++|.+|++.| ||+.|-|+.|+|..
T Consensus 277 p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~l--ngfelAGr~ikV~~ 354 (549)
T KOG0147|consen 277 PMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQL--NGFELAGRLIKVSV 354 (549)
T ss_pred chhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHh--ccceecCceEEEEE
Confidence 3445999999999999999999999999999999999889999999999999999999999999 99999999999987
Q ss_pred cCCCCCCCCC---CCCcccccccccc---------------CCCCCCCCccccccccccccccccccccccCCCCCCCCc
Q 043164 365 SSKPTGGSGG---HYGQESAMGARHS---------------NHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPP 426 (1049)
Q Consensus 365 A~~p~~~~~~---~~~~~~~~~~~~~---------------~~r~~~p~dw~~~~~~~~n~~~r~~~~~~~~~~~~~~~~ 426 (1049)
.+........ ....+........ ......+..|+............. .+.-...
T Consensus 355 v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~-~~~~~~~------- 426 (549)
T KOG0147|consen 355 VTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAA-QFNGVVR------- 426 (549)
T ss_pred eeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHH-hhcCCcC-------
Confidence 5322111100 0000000000000 000111122221100000000000 0000000
Q ss_pred ccCCCCCCCCCCCCCCCCCCcceEEEeCCCccCcH----------HHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEe
Q 043164 427 AEMNSSNPIPLGKKGSDTGPTHVLVVRGLDEYADE----------EMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHF 496 (1049)
Q Consensus 427 ~~~~~s~~~~~~~~~~~~~ps~~LfV~NLp~~~te----------edLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF 496 (1049)
..+............|+.||.|.||....|| |+|.+.|++||.|.+|.|.+. +-|++||.|
T Consensus 427 ----~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~n-----s~g~VYvrc 497 (549)
T KOG0147|consen 427 ----VRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKN-----SAGCVYVRC 497 (549)
T ss_pred ----ccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccC-----CCceEEEec
Confidence 0000000001122368999999999876544 778999999999999998765 459999999
Q ss_pred CCHHHHHHHHHHhCCCeeccCCeEEEEEEee
Q 043164 497 HSVEDASKALEATNGTTLEKNGQILRVAYAK 527 (1049)
Q Consensus 497 ~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~Ak 527 (1049)
.+.+.|..|+.+|||.|| +|+.|.+.|--
T Consensus 498 ~s~~~A~~a~~alhgrWF--~gr~Ita~~~~ 526 (549)
T KOG0147|consen 498 PSAEAAGTAVKALHGRWF--AGRMITAKYLP 526 (549)
T ss_pred CcHHHHHHHHHHHhhhhh--ccceeEEEEee
Confidence 999999999999999999 79999999953
No 11
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=5.3e-24 Score=234.49 Aligned_cols=231 Identities=23% Similarity=0.296 Sum_probs=154.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeee-CCeeEEE
Q 043164 284 APSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVV-DGRKLFF 362 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i-~Gr~i~V 362 (1049)
.-.+.||||.||.++.|++|.-||++.|+|-+++||+|+.+|.+||||||.|.+.++|+.|++.| |+..| .|+.|.|
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~l--nn~Eir~GK~igv 158 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKEL--NNYEIRPGKLLGV 158 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHh--hCccccCCCEeEE
Confidence 55789999999999999999999999999999999999999999999999999999999999999 88877 5899998
Q ss_pred eecCCCCCCC--CCC--CCccccccc----cccCCC---CCCCCccccc---------cccccccccccccccccCCCCC
Q 043164 363 EYSSKPTGGS--GGH--YGQESAMGA----RHSNHK---STIPCDWMCT---------ICGCVNFARRTSCFQCNEARTD 422 (1049)
Q Consensus 363 ~~A~~p~~~~--~~~--~~~~~~~~~----~~~~~r---~~~p~dw~~~---------~~~~~n~~~r~~~~~~~~~~~~ 422 (1049)
..+.....=. ..| ...++++.. ...-.. ...|.|-.-+ ...+..++++...... -+..
T Consensus 159 c~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~--~klw 236 (506)
T KOG0117|consen 159 CVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGK--IKLW 236 (506)
T ss_pred EEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCc--eeec
Confidence 8752110000 000 111111110 000000 0011110000 0000011111110000 0000
Q ss_pred CCCcccCCCCCCCCCCCCCCCCCCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHH
Q 043164 423 DAPPAEMNSSNPIPLGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDA 502 (1049)
Q Consensus 423 ~~~~~~~~~s~~~~~~~~~~~~~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A 502 (1049)
.....+....+..-... ........|||+||+..+|||.|.++|+.||.|..|+.++| ||||+|.+.++|
T Consensus 237 -gn~~tVdWAep~~e~de-d~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~da 306 (506)
T KOG0117|consen 237 -GNAITVDWAEPEEEPDE-DTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDA 306 (506)
T ss_pred -CCcceeeccCcccCCCh-hhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHH
Confidence 00000000100000000 11223578999999999999999999999999999999987 999999999999
Q ss_pred HHHHHHhCCCeeccCCeEEEEEEeecCC
Q 043164 503 SKALEATNGTTLEKNGQILRVAYAKSIL 530 (1049)
Q Consensus 503 ~kAl~~LnG~~~~i~Gr~L~V~~Ak~k~ 530 (1049)
.+||+.|||..| +|..|.|.+||+..
T Consensus 307 vkAm~~~ngkel--dG~~iEvtLAKP~~ 332 (506)
T KOG0117|consen 307 VKAMKETNGKEL--DGSPIEVTLAKPVD 332 (506)
T ss_pred HHHHHHhcCcee--cCceEEEEecCChh
Confidence 999999999999 79999999999963
No 12
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.91 E-value=5.8e-24 Score=210.24 Aligned_cols=174 Identities=25% Similarity=0.394 Sum_probs=155.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEe
Q 043164 284 APSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFE 363 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~ 363 (1049)
....+|||+||+..++++.|.++|-+.|+|++|.|.+|+.+...+|||||+|.+.|+|.-|++-| |.+.|-|++|+|.
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikil--n~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKIL--NMVKLYGRPIRVN 84 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHH--HHHHhcCceeEEE
Confidence 45579999999999999999999999999999999999999999999999999999999999999 8999999999998
Q ss_pred ecCCCCCCCCCCCCccccccccccCCCCCCCCccccccccccccccccccccccCCCCCCCCcccCCCCCCCCCCCCCCC
Q 043164 364 YSSKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKGSD 443 (1049)
Q Consensus 364 ~A~~p~~~~~~~~~~~~~~~~~~~~~r~~~p~dw~~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 443 (1049)
.+.... . .
T Consensus 85 kas~~~---------~---------------------------------------------------------------n 92 (203)
T KOG0131|consen 85 KASAHQ---------K---------------------------------------------------------------N 92 (203)
T ss_pred eccccc---------c---------------------------------------------------------------c
Confidence 752100 0 0
Q ss_pred CCCcceEEEeCCCccCcHHHHHHHhhccCCeeeE-EEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEE
Q 043164 444 TGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDL-RLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILR 522 (1049)
Q Consensus 444 ~~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v-~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~ 522 (1049)
..-+..|||+||.+.++|..|.+.|+.||.|... .|+++..||.++||+||.|.+.+.+.+|+..|||+.+ +++.|.
T Consensus 93 l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l--~nr~it 170 (203)
T KOG0131|consen 93 LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYL--CNRPIT 170 (203)
T ss_pred ccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchh--cCCceE
Confidence 0013589999999999999999999999998654 8999999999999999999999999999999999988 799999
Q ss_pred EEEeecCCCCC
Q 043164 523 VAYAKSILGPG 533 (1049)
Q Consensus 523 V~~Ak~k~~~~ 533 (1049)
|.|++.+-..+
T Consensus 171 v~ya~k~~~kg 181 (203)
T KOG0131|consen 171 VSYAFKKDTKG 181 (203)
T ss_pred EEEEEecCCCc
Confidence 99998875444
No 13
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=3.8e-23 Score=213.21 Aligned_cols=236 Identities=20% Similarity=0.368 Sum_probs=161.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEeecC
Q 043164 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYSS 366 (1049)
Q Consensus 287 ~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~A~ 366 (1049)
..|+|.-||..+|+++|+.+|...|+|++|+|++|+.+|++.||+||.|-+++||.+|+..| ||+.+..++|+|.||.
T Consensus 42 TNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~Aintl--NGLrLQ~KTIKVSyAR 119 (360)
T KOG0145|consen 42 TNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTL--NGLRLQNKTIKVSYAR 119 (360)
T ss_pred ceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhh--cceeeccceEEEEecc
Confidence 57999999999999999999999999999999999999999999999999999999999999 9999999999999983
Q ss_pred CCCCCC---------CCC--CCcccc----ccccc-cCCCCCCCCccc---ccccccccccccccc------------cc
Q 043164 367 KPTGGS---------GGH--YGQESA----MGARH-SNHKSTIPCDWM---CTICGCVNFARRTSC------------FQ 415 (1049)
Q Consensus 367 ~p~~~~---------~~~--~~~~~~----~~~~~-~~~r~~~p~dw~---~~~~~~~n~~~r~~~------------~~ 415 (1049)
|.... +.| +.+.+. ...+. ...+ ...|-. ....++..|.++... ..
T Consensus 120 -PSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSR--iL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g 196 (360)
T KOG0145|consen 120 -PSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSR--ILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 196 (360)
T ss_pred -CChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhh--hhhhcccceecceeEEEecchhHHHHHHHhccCCCCCC
Confidence 33221 111 111110 00000 0000 000000 001111111111100 00
Q ss_pred ccCCC----------------------------------------CCCCCccc------CCCCCCCCC----CCCCCCCC
Q 043164 416 CNEAR----------------------------------------TDDAPPAE------MNSSNPIPL----GKKGSDTG 445 (1049)
Q Consensus 416 ~~~~~----------------------------------------~~~~~~~~------~~~s~~~~~----~~~~~~~~ 445 (1049)
|.+|. ....+... .++....+. ........
T Consensus 197 ~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~ 276 (360)
T KOG0145|consen 197 CTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPG 276 (360)
T ss_pred CCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCC
Confidence 00000 00000000 000000000 00111123
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~ 525 (1049)
...||||-||.++++|..|+++|.+||.|.+|+|++|..|++.+||+||.+.+-++|..||..|||..+ +++.|.|.|
T Consensus 277 ~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~l--g~rvLQVsF 354 (360)
T KOG0145|consen 277 GGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRL--GDRVLQVSF 354 (360)
T ss_pred CeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccc--cceEEEEEE
Confidence 368999999999999999999999999999999999999999999999999999999999999999999 899999999
Q ss_pred eecC
Q 043164 526 AKSI 529 (1049)
Q Consensus 526 Ak~k 529 (1049)
-..+
T Consensus 355 Ktnk 358 (360)
T KOG0145|consen 355 KTNK 358 (360)
T ss_pred ecCC
Confidence 6554
No 14
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=6.8e-24 Score=232.48 Aligned_cols=174 Identities=25% Similarity=0.424 Sum_probs=151.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCC--eeEE
Q 043164 284 APSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDG--RKLF 361 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~G--r~i~ 361 (1049)
...-+|||+.||..++|.+|+++|++||.|.+|.|++|+.|+.++|||||.|.+.++|.+|+.+| .|-+.|.| .+|.
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Al-hn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINAL-HNQKTLPGMHHPVQ 110 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHh-hcccccCCCCccee
Confidence 44568999999999999999999999999999999999999999999999999999999999998 35556666 5778
Q ss_pred EeecCCCCCCCCCCCCccccccccccCCCCCCCCccccccccccccccccccccccCCCCCCCCcccCCCCCCCCCCCCC
Q 043164 362 FEYSSKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKG 441 (1049)
Q Consensus 362 V~~A~~p~~~~~~~~~~~~~~~~~~~~~r~~~p~dw~~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 441 (1049)
|.||..... .+
T Consensus 111 vk~Ad~E~e---------------------------------------------------------r~------------ 121 (510)
T KOG0144|consen 111 VKYADGERE---------------------------------------------------------RI------------ 121 (510)
T ss_pred ecccchhhh---------------------------------------------------------cc------------
Confidence 877621100 00
Q ss_pred CCCCCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCC-eeccCCeE
Q 043164 442 SDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGT-TLEKNGQI 520 (1049)
Q Consensus 442 ~~~~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~-~~~i~Gr~ 520 (1049)
....+|||+.|+..+||.+|+++|++||.|++|.|++|. .+.+||||||.|.+.+.|..||++|||. .++....+
T Consensus 122 ---~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~P 197 (510)
T KOG0144|consen 122 ---VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQP 197 (510)
T ss_pred ---ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCc
Confidence 013589999999999999999999999999999999996 7899999999999999999999999986 56667789
Q ss_pred EEEEEeecCCC
Q 043164 521 LRVAYAKSILG 531 (1049)
Q Consensus 521 L~V~~Ak~k~~ 531 (1049)
|.|.||..+..
T Consensus 198 LVVkFADtqkd 208 (510)
T KOG0144|consen 198 LVVKFADTQKD 208 (510)
T ss_pred eEEEecccCCC
Confidence 99999987644
No 15
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.90 E-value=9.7e-23 Score=248.62 Aligned_cols=166 Identities=25% Similarity=0.433 Sum_probs=148.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEeecCC
Q 043164 288 TIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYSSK 367 (1049)
Q Consensus 288 ~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~A~~ 367 (1049)
+|||+|||.++||++|+++|+.||+|.+|+|++|..|++++|||||+|.+.++|.+||+.| ++..|.|+.|+|.|+..
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~l--n~~~i~gk~i~i~~s~~ 79 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETM--NFKRLGGKPIRIMWSQR 79 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHh--CCCEECCeeEEeecccc
Confidence 6999999999999999999999999999999999999999999999999999999999999 99999999999999621
Q ss_pred CCCCCCCCCCccccccccccCCCCCCCCccccccccccccccccccccccCCCCCCCCcccCCCCCCCCCCCCCCCCCCc
Q 043164 368 PTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKGSDTGPT 447 (1049)
Q Consensus 368 p~~~~~~~~~~~~~~~~~~~~~r~~~p~dw~~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ps 447 (1049)
... .. ....
T Consensus 80 ~~~----------------------------------------------------------~~-------------~~~~ 88 (562)
T TIGR01628 80 DPS----------------------------------------------------------LR-------------RSGV 88 (562)
T ss_pred ccc----------------------------------------------------------cc-------------ccCC
Confidence 000 00 0012
Q ss_pred ceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEEee
Q 043164 448 HVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYAK 527 (1049)
Q Consensus 448 ~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~Ak 527 (1049)
.+|||+||+..+++++|.++|+.||.|..|+|+.+. +|.++|||||+|.+.++|.+|++.|||..+ +++.|.|....
T Consensus 89 ~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~~--~~~~i~v~~~~ 165 (562)
T TIGR01628 89 GNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNGMLL--NDKEVYVGRFI 165 (562)
T ss_pred CceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcccEe--cCceEEEeccc
Confidence 479999999999999999999999999999999985 788999999999999999999999999988 79999997755
Q ss_pred cC
Q 043164 528 SI 529 (1049)
Q Consensus 528 ~k 529 (1049)
.+
T Consensus 166 ~~ 167 (562)
T TIGR01628 166 KK 167 (562)
T ss_pred cc
Confidence 43
No 16
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.89 E-value=1.1e-22 Score=241.90 Aligned_cols=232 Identities=21% Similarity=0.292 Sum_probs=149.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeC-CeeEEEe
Q 043164 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVD-GRKLFFE 363 (1049)
Q Consensus 285 ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~-Gr~i~V~ 363 (1049)
..++|||+|||.+++|++|+++|+.||+|.+|+|++| .+|.++|||||+|.+.++|.+||+.| |+..|. |+.|.|.
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~l--ng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLL--NNYEIRPGRLLGVC 133 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHc--CCCeecCCcccccc
Confidence 4589999999999999999999999999999999999 79999999999999999999999999 888885 7888877
Q ss_pred ecCCCCCCC--CCCC--Cccc----cccccccC-CCCC--CCCccc-cccccccccccccccccc----cCCCC-CCCCc
Q 043164 364 YSSKPTGGS--GGHY--GQES----AMGARHSN-HKST--IPCDWM-CTICGCVNFARRTSCFQC----NEART-DDAPP 426 (1049)
Q Consensus 364 ~A~~p~~~~--~~~~--~~~~----~~~~~~~~-~r~~--~p~dw~-~~~~~~~n~~~r~~~~~~----~~~~~-~~~~~ 426 (1049)
.+.....-. ..+. ..++ |.+..... ..+. .+.+.. .....++.|......... ..... .....
T Consensus 134 ~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~ 213 (578)
T TIGR01648 134 ISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHV 213 (578)
T ss_pred ccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCce
Confidence 652110000 0000 0000 00000000 0000 000000 001112222211000000 00000 00000
Q ss_pred ccCCCCCCCCCCCCCCCCCCcceEEEeCCCccCcHHHHHHHhhcc--CCeeeEEEeecCCCCceeeEEEEEeCCHHHHHH
Q 043164 427 AEMNSSNPIPLGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKH--APIKDLRLVRDKFTHVSRGFAFLHFHSVEDASK 504 (1049)
Q Consensus 427 ~~~~~s~~~~~~~~~~~~~ps~~LfV~NLp~~~teedLre~Fs~f--G~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~k 504 (1049)
..+....+.. ...........+|||+||+..+++++|+++|++| |.|+.|.+++ +||||+|.+.++|.+
T Consensus 214 I~VdwA~p~~-~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~k 284 (578)
T TIGR01648 214 IAVDWAEPEE-EVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVK 284 (578)
T ss_pred EEEEeecccc-cccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHH
Confidence 0000000000 0000112235789999999999999999999999 9999998764 499999999999999
Q ss_pred HHHHhCCCeeccCCeEEEEEEeecCC
Q 043164 505 ALEATNGTTLEKNGQILRVAYAKSIL 530 (1049)
Q Consensus 505 Al~~LnG~~~~i~Gr~L~V~~Ak~k~ 530 (1049)
||+.|||..| +|+.|+|.||++..
T Consensus 285 Ai~~lnG~~i--~Gr~I~V~~Akp~~ 308 (578)
T TIGR01648 285 AMDELNGKEL--EGSEIEVTLAKPVD 308 (578)
T ss_pred HHHHhCCCEE--CCEEEEEEEccCCC
Confidence 9999999999 79999999998863
No 17
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.88 E-value=7.1e-22 Score=241.04 Aligned_cols=184 Identities=29% Similarity=0.485 Sum_probs=151.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeC----CeeE
Q 043164 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVD----GRKL 360 (1049)
Q Consensus 285 ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~----Gr~i 360 (1049)
..++|||+|||..+|+++|+++|+.||.|..|.|+.+. +|.++|||||+|.+.++|.+|++.| +|..|. |+.|
T Consensus 177 ~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l--~g~~i~~~~~g~~l 253 (562)
T TIGR01628 177 KFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEM--NGKKIGLAKEGKKL 253 (562)
T ss_pred CCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHh--CCcEecccccceee
Confidence 34689999999999999999999999999999999984 7999999999999999999999999 999999 9999
Q ss_pred EEeecCCCCCCCCCCCCccccccccccCCCCCCCCccccccccccccccccccccccCCCCCCCCcccCCCCCCCCCCCC
Q 043164 361 FFEYSSKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKK 440 (1049)
Q Consensus 361 ~V~~A~~p~~~~~~~~~~~~~~~~~~~~~r~~~p~dw~~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 440 (1049)
.|.++....... . ..+ . .+ . .....
T Consensus 254 ~v~~a~~k~er~------~-~~~-----~----------------~~-------~--~~~~~------------------ 278 (562)
T TIGR01628 254 YVGRAQKRAERE------A-ELR-----R----------------KF-------E--ELQQE------------------ 278 (562)
T ss_pred EeecccChhhhH------H-HHH-----h----------------hH-------H--hhhhh------------------
Confidence 998863211100 0 000 0 00 0 00000
Q ss_pred CCCCCCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeE
Q 043164 441 GSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQI 520 (1049)
Q Consensus 441 ~~~~~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~ 520 (1049)
........+|||+||+..+++++|+++|++||.|..|+|+.| .++.++|||||+|.+.++|.+|+..|||..| +|+.
T Consensus 279 ~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~--~gk~ 355 (562)
T TIGR01628 279 RKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRML--GGKP 355 (562)
T ss_pred hhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCee--CCce
Confidence 000112457999999999999999999999999999999999 5899999999999999999999999999888 7999
Q ss_pred EEEEEeecC
Q 043164 521 LRVAYAKSI 529 (1049)
Q Consensus 521 L~V~~Ak~k 529 (1049)
|.|.+|..+
T Consensus 356 l~V~~a~~k 364 (562)
T TIGR01628 356 LYVALAQRK 364 (562)
T ss_pred eEEEeccCc
Confidence 999999875
No 18
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.87 E-value=3.4e-21 Score=230.14 Aligned_cols=174 Identities=22% Similarity=0.310 Sum_probs=142.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEee
Q 043164 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEY 364 (1049)
Q Consensus 285 ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~ 364 (1049)
|+++|||+|||..+||++|+++|++||+|..|.|+++ +|||||+|.+.++|..||+.|..+++.|.|++|.|.|
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 6789999999999999999999999999999999864 5799999999999999999754488999999999999
Q ss_pred cCCCCCCCCCCCCccccccccccCCCCCCCCccccccccccccccccccccccCCCCCCCCcccCCCCCCCCCCCCCCCC
Q 043164 365 SSKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKGSDT 444 (1049)
Q Consensus 365 A~~p~~~~~~~~~~~~~~~~~~~~~r~~~p~dw~~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 444 (1049)
+...... .+.+ ..+ . . ...
T Consensus 75 s~~~~~~---------------------~~~~--------~~~--------------------~---~---------~~~ 93 (481)
T TIGR01649 75 STSQEIK---------------------RDGN--------SDF--------------------D---S---------AGP 93 (481)
T ss_pred cCCcccc---------------------cCCC--------Ccc--------------------c---C---------CCC
Confidence 7421100 0000 000 0 0 000
Q ss_pred CCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEE
Q 043164 445 GPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVA 524 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~ 524 (1049)
....+|+|.||+..+++++|.++|+.||.|..|.|+++.. .|+|||+|.+.++|.+|++.|||..|..+++.|+|.
T Consensus 94 ~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~ 169 (481)
T TIGR01649 94 NKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIE 169 (481)
T ss_pred CceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEE
Confidence 1234799999999999999999999999999999988642 479999999999999999999999996345799999
Q ss_pred EeecC
Q 043164 525 YAKSI 529 (1049)
Q Consensus 525 ~Ak~k 529 (1049)
|++..
T Consensus 170 ~sk~~ 174 (481)
T TIGR01649 170 YAKPT 174 (481)
T ss_pred EecCC
Confidence 99875
No 19
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=2.9e-21 Score=216.83 Aligned_cols=241 Identities=20% Similarity=0.291 Sum_probs=154.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEeec
Q 043164 286 SGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYS 365 (1049)
Q Consensus 286 s~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~A 365 (1049)
--+|+|+|||+.+.+.+|..+|+.||.|..|.|++.+.++.+ |||||.|....+|..||+.| |+..|+|++|.|.||
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklc-GFaFV~fk~~~dA~~Al~~~--N~~~i~gR~VAVDWA 193 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLC-GFAFVQFKEKKDAEKALEFF--NGNKIDGRPVAVDWA 193 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCcc-ceEEEEEeeHHHHHHHHHhc--cCceecCceeEEeee
Confidence 458999999999999999999999999999999987766666 99999999999999999999 999999999999998
Q ss_pred CCCCCCCCCCC-CccccccccccCCCCCCCCcccc---ccccccccccc------cccccccCCCCCCCCcccCC----C
Q 043164 366 SKPTGGSGGHY-GQESAMGARHSNHKSTIPCDWMC---TICGCVNFARR------TSCFQCNEARTDDAPPAEMN----S 431 (1049)
Q Consensus 366 ~~p~~~~~~~~-~~~~~~~~~~~~~r~~~p~dw~~---~~~~~~n~~~r------~~~~~~~~~~~~~~~~~~~~----~ 431 (1049)
-....-....+ .+++..+..........+.|--. ...+..+--.. ...+.......++....+.. .
T Consensus 194 V~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~ 273 (678)
T KOG0127|consen 194 VDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGK 273 (678)
T ss_pred cccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhcccccccccccccccccccc
Confidence 32211110000 00000000000000000000000 00000000000 00000000000000000000 0
Q ss_pred C--CCCCCCCC-CCCCCCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHH
Q 043164 432 S--NPIPLGKK-GSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEA 508 (1049)
Q Consensus 432 s--~~~~~~~~-~~~~~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~ 508 (1049)
. ........ .....-..+|||+|||+++|++.|.++|++||.|..+.|+.++.|+.+.|.|||.|.+..+|+.||.+
T Consensus 274 ~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~ 353 (678)
T KOG0127|consen 274 KESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEA 353 (678)
T ss_pred CcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHh
Confidence 0 00000000 11223347999999999999999999999999999999999999999999999999999999999998
Q ss_pred h---CCCe-eccCCeEEEEEEeecC
Q 043164 509 T---NGTT-LEKNGQILRVAYAKSI 529 (1049)
Q Consensus 509 L---nG~~-~~i~Gr~L~V~~Ak~k 529 (1049)
. ++.. +.++|+.|+|..|-..
T Consensus 354 Aspa~e~g~~ll~GR~Lkv~~Av~R 378 (678)
T KOG0127|consen 354 ASPASEDGSVLLDGRLLKVTLAVTR 378 (678)
T ss_pred cCccCCCceEEEeccEEeeeeccch
Confidence 7 2222 4458999999986553
No 20
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=1.2e-21 Score=219.76 Aligned_cols=191 Identities=25% Similarity=0.379 Sum_probs=153.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEeecC
Q 043164 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYSS 366 (1049)
Q Consensus 287 ~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~A~ 366 (1049)
.||||++||+.++.++|.++|+.+|+|..+.++.++.++.++||+||.|.-.++++.|++.+ ++..|.|+.|.|..|.
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~--~~~kf~Gr~l~v~~A~ 83 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAET--EQSKFEGRILNVDPAK 83 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHh--hcCcccceeccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999998 9999999999999974
Q ss_pred CCCCCCCCCCCccccccccccCCCCCCCCccccccccccccccccccccccCCCCCCCCcccCCCCCCCCCCCCCCCCCC
Q 043164 367 KPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKGSDTGP 446 (1049)
Q Consensus 367 ~p~~~~~~~~~~~~~~~~~~~~~r~~~p~dw~~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~p 446 (1049)
..........+. +...-|+ ...+++ ...-...+
T Consensus 84 ~R~r~e~~~~~e---------------~~~veK~---------------~~q~~~-----------------~k~~v~~~ 116 (678)
T KOG0127|consen 84 KRARSEEVEKGE---------------NKAVEKP---------------IEQKRP-----------------TKAKVDLP 116 (678)
T ss_pred ccccchhccccc---------------chhhhcc---------------cccCCc-----------------chhhccCc
Confidence 321100000000 0000000 000000 00011224
Q ss_pred cceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEEe
Q 043164 447 THVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYA 526 (1049)
Q Consensus 447 s~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~A 526 (1049)
-..|+|+|||+.+...+|..+|+.||.|..|.|++...++.. |||||+|....+|..||+.|||..| +|++|.|.||
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklc-GFaFV~fk~~~dA~~Al~~~N~~~i--~gR~VAVDWA 193 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLC-GFAFVQFKEKKDAEKALEFFNGNKI--DGRPVAVDWA 193 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCcc-ceEEEEEeeHHHHHHHHHhccCcee--cCceeEEeee
Confidence 579999999999999999999999999999999987755555 9999999999999999999999999 7999999999
Q ss_pred ecC
Q 043164 527 KSI 529 (1049)
Q Consensus 527 k~k 529 (1049)
-++
T Consensus 194 V~K 196 (678)
T KOG0127|consen 194 VDK 196 (678)
T ss_pred ccc
Confidence 776
No 21
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.86 E-value=9.8e-21 Score=226.16 Aligned_cols=200 Identities=22% Similarity=0.324 Sum_probs=146.4
Q ss_pred CCCCceEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEE
Q 043164 283 VAPSGTIVVKGLSQ-KTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLF 361 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~-~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~ 361 (1049)
..++.+|||+|||. .+|+++|+++|+.||.|..|+|++++ +|||||+|.+.++|..||..| ||..|.|+.|.
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~l--ng~~l~g~~l~ 344 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHL--NGVKLFGKPLR 344 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHh--CCCEECCceEE
Confidence 35778999999998 69999999999999999999999873 689999999999999999999 99999999999
Q ss_pred EeecCCCCCCCCCCCCccccccccccCCCCCCCCccccccccccccccccccccccCCCCCCCCcccCCCCCCCCCCCCC
Q 043164 362 FEYSSKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKG 441 (1049)
Q Consensus 362 V~~A~~p~~~~~~~~~~~~~~~~~~~~~r~~~p~dw~~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 441 (1049)
|.++....... +.. ..+........++... ....+.. +. .....
T Consensus 345 v~~s~~~~~~~--~~~-------~~~~~~~~~~~d~~~~---------~~~r~~~--~~----------------~~~~~ 388 (481)
T TIGR01649 345 VCPSKQQNVQP--PRE-------GQLDDGLTSYKDYSSS---------RNHRFKK--PG----------------SANKN 388 (481)
T ss_pred EEEcccccccC--CCC-------CcCcCCCcccccccCC---------ccccCCC--cc----------------ccccc
Confidence 99974321100 000 0000000000111000 0000000 00 00000
Q ss_pred CCCCCcceEEEeCCCccCcHHHHHHHhhccCC--eeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCe
Q 043164 442 SDTGPTHVLVVRGLDEYADEEMLRYEFSKHAP--IKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQ 519 (1049)
Q Consensus 442 ~~~~ps~~LfV~NLp~~~teedLre~Fs~fG~--I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr 519 (1049)
....|+.+|||+|||..+++++|+++|+.||. |..|++.... + ..+|+|||+|.+.++|..||..|||..| +++
T Consensus 389 ~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~-~-~~~~~gfVeF~~~e~A~~Al~~ln~~~l--~~~ 464 (481)
T TIGR01649 389 NIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKD-N-ERSKMGLLEWESVEDAVEALIALNHHQL--NEP 464 (481)
T ss_pred ccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCC-C-CcceeEEEEcCCHHHHHHHHHHhcCCcc--CCC
Confidence 11236789999999999999999999999998 8888887543 2 3689999999999999999999999999 566
Q ss_pred ------EEEEEEeecC
Q 043164 520 ------ILRVAYAKSI 529 (1049)
Q Consensus 520 ------~L~V~~Ak~k 529 (1049)
.|+|+|+++.
T Consensus 465 ~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 465 NGSAPYHLKVSFSTSR 480 (481)
T ss_pred CCCccceEEEEeccCC
Confidence 5999998764
No 22
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=2.5e-21 Score=207.48 Aligned_cols=178 Identities=19% Similarity=0.353 Sum_probs=152.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEeec
Q 043164 286 SGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYS 365 (1049)
Q Consensus 286 s~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~A 365 (1049)
-++||||.|.+.+.|+.|+..|.+||+|++|.+..|+.|++.||||||+|+-+|.|..|++.| ||..++|+.|+|...
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqM--Ng~mlGGRNiKVgrP 190 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQM--NGQMLGGRNIKVGRP 190 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHh--ccccccCccccccCC
Confidence 369999999999999999999999999999999999999999999999999999999999999 999999999999752
Q ss_pred CCCCCCCCCCCCccccccccccCCCCCCCCccccccccccccccccccccccCCCCCCCCcccCCCCCCCCCCCCCCCCC
Q 043164 366 SKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKGSDTG 445 (1049)
Q Consensus 366 ~~p~~~~~~~~~~~~~~~~~~~~~r~~~p~dw~~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 445 (1049)
.+ .|..+.- .+.. .....
T Consensus 191 ---sN---mpQAQpi----------------------------------------------ID~v----------qeeAk 208 (544)
T KOG0124|consen 191 ---SN---MPQAQPI----------------------------------------------IDMV----------QEEAK 208 (544)
T ss_pred ---CC---CcccchH----------------------------------------------HHHH----------HHHHH
Confidence 11 0000000 0000 00001
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~ 525 (1049)
.-++|||..+.+++.|+||+..|+.||+|+.|.|-+++.++..+||+||+|.+...-..||..||-+.| +|.-|+|..
T Consensus 209 ~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDL--GGQyLRVGk 286 (544)
T KOG0124|consen 209 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDL--GGQYLRVGK 286 (544)
T ss_pred hhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhc--ccceEeccc
Confidence 246899999999999999999999999999999999999999999999999999999999999998888 899999988
Q ss_pred eecC
Q 043164 526 AKSI 529 (1049)
Q Consensus 526 Ak~k 529 (1049)
+-..
T Consensus 287 ~vTP 290 (544)
T KOG0124|consen 287 CVTP 290 (544)
T ss_pred ccCC
Confidence 7544
No 23
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.83 E-value=1.3e-20 Score=197.95 Aligned_cols=157 Identities=24% Similarity=0.465 Sum_probs=142.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEeecC
Q 043164 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYSS 366 (1049)
Q Consensus 287 ~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~A~ 366 (1049)
.+|||||||..+++.+|+.+|++||.|++|.|+++ ||||..++...|..||..| ++.+|+|..|.|+-++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNL--hgYtLhg~nInVeaSk 72 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNL--HGYTLHGVNINVEASK 72 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhc--ccceecceEEEEEecc
Confidence 46999999999999999999999999999999987 9999999999999999999 9999999999998752
Q ss_pred CCCCCCCCCCCccccccccccCCCCCCCCccccccccccccccccccccccCCCCCCCCcccCCCCCCCCCCCCCCCCCC
Q 043164 367 KPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKGSDTGP 446 (1049)
Q Consensus 367 ~p~~~~~~~~~~~~~~~~~~~~~r~~~p~dw~~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~p 446 (1049)
.. ..+
T Consensus 73 sK---------------------------------------------------------------------------sk~ 77 (346)
T KOG0109|consen 73 SK---------------------------------------------------------------------------SKA 77 (346)
T ss_pred cc---------------------------------------------------------------------------CCC
Confidence 11 013
Q ss_pred cceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEEe
Q 043164 447 THVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYA 526 (1049)
Q Consensus 447 s~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~A 526 (1049)
+.+|+|+||.+.++.++|+..|++||+|.++.|++| ++||.|.-.++|..|+..|+|..| +|+.++|...
T Consensus 78 stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~--~gk~m~vq~s 147 (346)
T KOG0109|consen 78 STKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEF--QGKRMHVQLS 147 (346)
T ss_pred ccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhccccccc--ccceeeeeee
Confidence 568999999999999999999999999999999986 999999999999999999999999 7999999999
Q ss_pred ecCCCCCCCCCC
Q 043164 527 KSILGPGSGMSA 538 (1049)
Q Consensus 527 k~k~~~~~~~~~ 538 (1049)
.+......+++.
T Consensus 148 tsrlrtapgmgD 159 (346)
T KOG0109|consen 148 TSRLRTAPGMGD 159 (346)
T ss_pred ccccccCCCCCC
Confidence 888766655543
No 24
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.78 E-value=9.7e-19 Score=203.11 Aligned_cols=173 Identities=31% Similarity=0.480 Sum_probs=146.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCC---CCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEee
Q 043164 288 TIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNS---GVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEY 364 (1049)
Q Consensus 288 ~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~t---g~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~ 364 (1049)
+|||.||++.+|.++|..+|...|.|..|.|.+.+.. -.|.|||||+|.++++|+.|+..| +|..|+|+.|.|.+
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~l--qgtvldGH~l~lk~ 594 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKAL--QGTVLDGHKLELKI 594 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHh--cCceecCceEEEEe
Confidence 3999999999999999999999999999988875432 136699999999999999999999 99999999999999
Q ss_pred cC-CCCCCCCCCCCccccccccccCCCCCCCCccccccccccccccccccccccCCCCCCCCcccCCCCCCCCCCCCCCC
Q 043164 365 SS-KPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKGSD 443 (1049)
Q Consensus 365 A~-~p~~~~~~~~~~~~~~~~~~~~~r~~~p~dw~~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 443 (1049)
+. .|.. . .+.....
T Consensus 595 S~~k~~~-~----------------------------------------------------------------~gK~~~~ 609 (725)
T KOG0110|consen 595 SENKPAS-T----------------------------------------------------------------VGKKKSK 609 (725)
T ss_pred ccCcccc-c----------------------------------------------------------------ccccccc
Confidence 73 1110 0 0000001
Q ss_pred CCCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEE
Q 043164 444 TGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRV 523 (1049)
Q Consensus 444 ~~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V 523 (1049)
...++.|+|+|||+..+-.+|+++|..||.|..|+|++-...+.++|||||+|.++.+|..|+.+|.++.|+ |+.|.+
T Consensus 610 kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHly--GRrLVL 687 (725)
T KOG0110|consen 610 KKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLY--GRRLVL 687 (725)
T ss_pred ccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhccccee--chhhhe
Confidence 112568999999999999999999999999999999987556678999999999999999999999988885 999999
Q ss_pred EEeecC
Q 043164 524 AYAKSI 529 (1049)
Q Consensus 524 ~~Ak~k 529 (1049)
.||+..
T Consensus 688 EwA~~d 693 (725)
T KOG0110|consen 688 EWAKSD 693 (725)
T ss_pred ehhccc
Confidence 999885
No 25
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.77 E-value=4.3e-17 Score=194.64 Aligned_cols=82 Identities=13% Similarity=0.326 Sum_probs=78.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEee
Q 043164 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEY 364 (1049)
Q Consensus 285 ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~ 364 (1049)
...+|||+|||+.+++++|+++|+.||.|..|.|++++.+|.++|||||+|.+.++|..||+.| |++.|+|+.|+|.+
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~am--Ng~elgGr~LrV~k 280 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASM--NLFDLGGQYLRVGK 280 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHh--CCCeeCCeEEEEEe
Confidence 3478999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cCCC
Q 043164 365 SSKP 368 (1049)
Q Consensus 365 A~~p 368 (1049)
+..|
T Consensus 281 Ai~p 284 (612)
T TIGR01645 281 CVTP 284 (612)
T ss_pred cCCC
Confidence 8654
No 26
>KOG0154 consensus RNA-binding protein RBM5 and related proteins, contain G-patch and RRM domains [General function prediction only]
Probab=99.75 E-value=3.7e-18 Score=207.87 Aligned_cols=165 Identities=30% Similarity=0.367 Sum_probs=111.9
Q ss_pred CCCcccccCCccccccccccccchhhccCCCCCccccccccccCCCCCCCCCCCCCCCCcccchHHHHHhhcCCCCCCCC
Q 043164 840 SSAGSSSSVNSDTITAVTPFRTDASALGSYTPPVATGSGKRRFSEMPLPPATQKEQPQTTYRDRAAERRSLYGSSFSAGD 919 (1049)
Q Consensus 840 ~~~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yrDRa~eRR~~~g~~~~~~~ 919 (1049)
.+++|+||...+-...+..-+...++||+. ++.+..+..+.+ .......+.|+||++++|..+|.....+
T Consensus 408 ~~~~~~l~r~~~~~~~~~~~~~~~s~~h~~---n~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~g~~~~~~- 477 (573)
T KOG0154|consen 408 LKLMCLLCRRQFPSKGSLQKHLTPSDLHKE---NLDKHRRPSTLE------EASAEGPLAYRDRAKERRKSMGIVEGRG- 477 (573)
T ss_pred chhhhhhhhccCCchHHHhhhcccccchhh---hHHhhccchhhh------hhccccccccchHHHhHHHHhcCCCCCC-
Confidence 478999995555444444445588999998 545554444433 1112246889999999999999983111
Q ss_pred CCCCCCCCCCchhhhhccCCCCCCCCCCCCCCCC-cccCCcchhhhhcccccCCCCcHHHHHHHhcCCCCCCCCCCCCCC
Q 043164 920 DLPDVGSGDSNRDFALKKGSVDSMPFPPGVGGRG-FTADSVQSYEVITADKAIDENNVGNRMLRSMGWHEGLGLGKDGSG 998 (1049)
Q Consensus 920 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~~~i~~~n~g~~ml~~mGw~~G~gLG~~~~G 998 (1049)
+. ...++...... .....+......+...+|+.+|+|.+||++|||.+|+|||+..+|
T Consensus 478 ------------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sn~~~~~l~~~gw~~g~Glg~~~~g 536 (573)
T KOG0154|consen 478 ------------PG---------RSKPDSFEPISVLLESRQKSSRGATEEPPIDTSNVGNRMLQSMGWKEGSGLGKKNQG 536 (573)
T ss_pred ------------CC---------cccCCCcccceeeccccccchhhccccccCCCCccchhhhhccCcccccccccccCC
Confidence 11 00111111100 011111222233445679999999999999999999999999999
Q ss_pred cccceeEEEccCCccccccCCcCCCccccccchhHHHHHHHHH
Q 043164 999 MIEPVQAQAMDSRAGLGSQQKKVDPSLEVQAGDSYKTLIHKKA 1041 (1049)
Q Consensus 999 ~~~pi~~~~~~~~~GlG~~~~~~~~~~~~~~~~~y~~~~~~~~ 1041 (1049)
+++||+++.+..++|||+. . ....+.++ |+.+++++|
T Consensus 537 ~~~~~e~~~~~~~~~lg~~-~----~~~~~~~~-~~~~~~k~~ 573 (573)
T KOG0154|consen 537 IKEPIEAEGRDRGAGLGAK-S----KQGVKGND-YKEAKRKKM 573 (573)
T ss_pred CcccccccccccCCCCCcc-c----ccccCCcc-hhhhhhccC
Confidence 9999999999999999999 2 24567788 999988765
No 27
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=1.5e-17 Score=190.24 Aligned_cols=152 Identities=28% Similarity=0.495 Sum_probs=139.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEeecC
Q 043164 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYSS 366 (1049)
Q Consensus 287 ~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~A~ 366 (1049)
..|||| +.+||..|.++|+++|+|++|+|.+|. | +-|||||.|.++++|.+||+.| |...|.|++|+|.|+.
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~--n~~~~~~~~~rim~s~ 73 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTM--NFDVLKGKPIRIMWSQ 73 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHc--CCcccCCcEEEeehhc
Confidence 358999 999999999999999999999999997 6 9999999999999999999999 9999999999999962
Q ss_pred CCCCCCCCCCCccccccccccCCCCCCCCccccccccccccccccccccccCCCCCCCCcccCCCCCCCCCCCCCCCCCC
Q 043164 367 KPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKGSDTGP 446 (1049)
Q Consensus 367 ~p~~~~~~~~~~~~~~~~~~~~~r~~~p~dw~~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~p 446 (1049)
.- |
T Consensus 74 rd-----------------------------------------------------------------------------~ 76 (369)
T KOG0123|consen 74 RD-----------------------------------------------------------------------------P 76 (369)
T ss_pred cC-----------------------------------------------------------------------------C
Confidence 10 0
Q ss_pred cceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEEe
Q 043164 447 THVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYA 526 (1049)
Q Consensus 447 s~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~A 526 (1049)
..|||.||++.++...|.++|+.||.|..|+|..+.. | ++|| ||+|.+.++|.+||+.|||..+ .++.|.|...
T Consensus 77 -~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll--~~kki~vg~~ 150 (369)
T KOG0123|consen 77 -SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLL--NGKKIYVGLF 150 (369)
T ss_pred -ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCccc--CCCeeEEeec
Confidence 1299999999999999999999999999999999974 4 9999 9999999999999999999999 6999999887
Q ss_pred ecC
Q 043164 527 KSI 529 (1049)
Q Consensus 527 k~k 529 (1049)
..+
T Consensus 151 ~~~ 153 (369)
T KOG0123|consen 151 ERK 153 (369)
T ss_pred cch
Confidence 665
No 28
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.75 E-value=1.6e-17 Score=191.70 Aligned_cols=186 Identities=22% Similarity=0.348 Sum_probs=141.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEeecCC
Q 043164 288 TIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYSSK 367 (1049)
Q Consensus 288 ~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~A~~ 367 (1049)
.|||++||..+++.++.+++..||++....++.|..+|.++||||++|.++..+..|++.| ||+.+.++.|.|..|-.
T Consensus 291 ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agL--nGm~lgd~~lvvq~A~~ 368 (500)
T KOG0120|consen 291 KIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGL--NGMQLGDKKLVVQRAIV 368 (500)
T ss_pred hhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhccc--chhhhcCceeEeehhhc
Confidence 8999999999999999999999999999999999999999999999999999999999999 99999999999988621
Q ss_pred CCCCCCCCCCccccccccccCCCCCCCCccccccccccccccccccccccCCCCCCCCcccCCCCCCCCCCCCCCCCCCc
Q 043164 368 PTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKGSDTGPT 447 (1049)
Q Consensus 368 p~~~~~~~~~~~~~~~~~~~~~r~~~p~dw~~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ps 447 (1049)
-.. .+.-|... . + .....+.. ........|+
T Consensus 369 g~~----------------------~~~~~~~~------~-----------~----~~~~~i~~------~~~q~~g~~t 399 (500)
T KOG0120|consen 369 GAS----------------------NANVNFNI------S-----------Q----SQVPGIPL------LMTQMAGIPT 399 (500)
T ss_pred cch----------------------hccccCCc------c-----------c----cccccchh------hhcccCCCcc
Confidence 100 00000000 0 0 00000000 0011223467
Q ss_pred ceEEEeCCCc--cC-cH-------HHHHHHhhccCCeeeEEEeecC---CCCceeeEEEEEeCCHHHHHHHHHHhCCCee
Q 043164 448 HVLVVRGLDE--YA-DE-------EMLRYEFSKHAPIKDLRLVRDK---FTHVSRGFAFLHFHSVEDASKALEATNGTTL 514 (1049)
Q Consensus 448 ~~LfV~NLp~--~~-te-------edLre~Fs~fG~I~~v~I~rD~---~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~ 514 (1049)
.+|++.|+=. .+ .+ |+|+..|++||.|..|.|.++- ...-..|.+||+|.+++++++|+++|+|..|
T Consensus 400 ~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF 479 (500)
T KOG0120|consen 400 EVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKF 479 (500)
T ss_pred hhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCcee
Confidence 8888888732 11 22 4567789999999999999872 2233578999999999999999999999999
Q ss_pred ccCCeEEEEEEe
Q 043164 515 EKNGQILRVAYA 526 (1049)
Q Consensus 515 ~i~Gr~L~V~~A 526 (1049)
+|++|...|-
T Consensus 480 --~nRtVvtsYy 489 (500)
T KOG0120|consen 480 --ANRTVVASYY 489 (500)
T ss_pred --CCcEEEEEec
Confidence 7999998884
No 29
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=2.5e-17 Score=172.07 Aligned_cols=140 Identities=25% Similarity=0.409 Sum_probs=118.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEe
Q 043164 284 APSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFE 363 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~ 363 (1049)
...+||||+||+..+||+-|..||...|+|..++||.| .|+|.
T Consensus 4 ~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~-------------------------------------e~~v~ 46 (321)
T KOG0148|consen 4 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD-------------------------------------ELKVN 46 (321)
T ss_pred CCCceEEeeccChhhHHHHHHHHHHhccccccceeehh-------------------------------------hhccc
Confidence 34589999999999999999999999999999999986 23455
Q ss_pred ecCCCCCCCCCCCCccccccccccCCCCCCCCccccccccccccccccccccccCCCCCCCCcccCCCCCCCCCCCCCCC
Q 043164 364 YSSKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKGSD 443 (1049)
Q Consensus 364 ~A~~p~~~~~~~~~~~~~~~~~~~~~r~~~p~dw~~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 443 (1049)
++..|.... ++ .
T Consensus 47 wa~~p~nQs-----------------------------------------------k~---------------------t 58 (321)
T KOG0148|consen 47 WATAPGNQS-----------------------------------------------KP---------------------T 58 (321)
T ss_pred cccCcccCC-----------------------------------------------CC---------------------c
Confidence 543321100 00 0
Q ss_pred CCCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEE
Q 043164 444 TGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRV 523 (1049)
Q Consensus 444 ~~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V 523 (1049)
....--+||+.|...++.|+|++.|.+||.|.+++|++|..|++++||+||-|.+.++|+.||..|||.+| ++|.|+-
T Consensus 59 ~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWl--G~R~IRT 136 (321)
T KOG0148|consen 59 SNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWL--GRRTIRT 136 (321)
T ss_pred cccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeee--ccceeec
Confidence 00134699999999999999999999999999999999999999999999999999999999999999999 8999999
Q ss_pred EEeecCC
Q 043164 524 AYAKSIL 530 (1049)
Q Consensus 524 ~~Ak~k~ 530 (1049)
.||.-|+
T Consensus 137 NWATRKp 143 (321)
T KOG0148|consen 137 NWATRKP 143 (321)
T ss_pred cccccCc
Confidence 9998775
No 30
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.69 E-value=1.2e-15 Score=157.63 Aligned_cols=211 Identities=22% Similarity=0.352 Sum_probs=148.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHH----HHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCe
Q 043164 283 VAPSGTIVVKGLSQKTTEEDLYQ----ILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGR 358 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~~~tee~L~~----~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr 358 (1049)
..|+.||||.||+..+..++|+. +|+.||.|.+|...+ |...+|-|||.|.+.+.|..|+.+| +|+-+-|+
T Consensus 6 ~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l--~gfpFygK 80 (221)
T KOG4206|consen 6 VNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRAL--QGFPFYGK 80 (221)
T ss_pred cCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHh--cCCcccCc
Confidence 45666999999999999999888 999999999888764 6788999999999999999999999 99999999
Q ss_pred eEEEeecCCCCCCCCCCCCccccccccccCCCCCCCCccccccccccccccccccccccCCCCCCCCcccCCCCCCCCCC
Q 043164 359 KLFFEYSSKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLG 438 (1049)
Q Consensus 359 ~i~V~~A~~p~~~~~~~~~~~~~~~~~~~~~r~~~p~dw~~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 438 (1049)
.|+|.||.....--..+.+............+...-. .+.........+...+.+...
T Consensus 81 ~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~----------------------~~~~~ng~~~~~~~~~~p~p~ 138 (221)
T KOG4206|consen 81 PMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIK----------------------QPLDTNGHFYNMNRMNLPPPF 138 (221)
T ss_pred hhheecccCccchhhccCceeccccCccccccccccC----------------------CcccccccccccccccCCCCc
Confidence 9999998544322111111000000000000000000 000000000000000000000
Q ss_pred CCCCCCCCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCC
Q 043164 439 KKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNG 518 (1049)
Q Consensus 439 ~~~~~~~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~G 518 (1049)
......|..+||+.|||..++.+.|..+|.+|.....|+++... .++|||+|.+...|..|.+.|+|..|. ..
T Consensus 139 -~~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it-~~ 211 (221)
T KOG4206|consen 139 -LAQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKIT-KK 211 (221)
T ss_pred -cccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceec-cC
Confidence 12334578999999999999999999999999999999998753 579999999999999999999999996 37
Q ss_pred eEEEEEEee
Q 043164 519 QILRVAYAK 527 (1049)
Q Consensus 519 r~L~V~~Ak 527 (1049)
..+.|.|++
T Consensus 212 ~~m~i~~a~ 220 (221)
T KOG4206|consen 212 NTMQITFAK 220 (221)
T ss_pred ceEEecccC
Confidence 788888875
No 31
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.68 E-value=2.4e-16 Score=173.71 Aligned_cols=83 Identities=20% Similarity=0.319 Sum_probs=77.3
Q ss_pred cceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEEe
Q 043164 447 THVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYA 526 (1049)
Q Consensus 447 s~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~A 526 (1049)
...|||.+||.+.-+.+|...|.+||.|+..++..|+.|+.+++|+||.|++..+|..||..|||+.| +.+.|+|...
T Consensus 424 GanlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQi--g~KrlkVQlk 501 (510)
T KOG0144|consen 424 GANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQI--GSKRLKVQLK 501 (510)
T ss_pred ccceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhh--ccccceEEee
Confidence 35799999999999999999999999999999999999999999999999999999999999999999 7999999987
Q ss_pred ecCCC
Q 043164 527 KSILG 531 (1049)
Q Consensus 527 k~k~~ 531 (1049)
..+..
T Consensus 502 ~~~~n 506 (510)
T KOG0144|consen 502 RDRNN 506 (510)
T ss_pred eccCC
Confidence 66543
No 32
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.67 E-value=2e-16 Score=175.14 Aligned_cols=173 Identities=27% Similarity=0.395 Sum_probs=146.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEee
Q 043164 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEY 364 (1049)
Q Consensus 285 ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~ 364 (1049)
..++|||++|+..++++.|++.|..||.|.+|.+++|+.+++++||+||+|.+.+....+|.. ....|+|+.|.+..
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~---~~h~~dgr~ve~k~ 81 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA---RTHKLDGRSVEPKR 81 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc---cccccCCcccccee
Confidence 568999999999999999999999999999999999999999999999999999999999865 67889999998877
Q ss_pred cCCCCCCCCCCCCccccccccccCCCCCCCCccccccccccccccccccccccCCCCCCCCcccCCCCCCCCCCCCCCCC
Q 043164 365 SSKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKGSDT 444 (1049)
Q Consensus 365 A~~p~~~~~~~~~~~~~~~~~~~~~r~~~p~dw~~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 444 (1049)
|...... . .....
T Consensus 82 av~r~~~-----------------------------------------------~--------------------~~~~~ 94 (311)
T KOG4205|consen 82 AVSREDQ-----------------------------------------------T--------------------KVGRH 94 (311)
T ss_pred ccCcccc-----------------------------------------------c--------------------ccccc
Confidence 5211000 0 00000
Q ss_pred CCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEE
Q 043164 445 GPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVA 524 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~ 524 (1049)
..+.+|||++|+..+++++|++.|.+||.|..+.|+.|..+...+||+||.|.+.+.+.+++. ..-..| +++.|.|.
T Consensus 95 ~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~--~gk~vevk 171 (311)
T KOG4205|consen 95 LRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDF--NGKKVEVK 171 (311)
T ss_pred cceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeee--cCceeeEe
Confidence 146799999999999999999999999999999999999999999999999999888877754 234445 89999999
Q ss_pred EeecCC
Q 043164 525 YAKSIL 530 (1049)
Q Consensus 525 ~Ak~k~ 530 (1049)
.|.++.
T Consensus 172 rA~pk~ 177 (311)
T KOG4205|consen 172 RAIPKE 177 (311)
T ss_pred eccchh
Confidence 998873
No 33
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.66 E-value=8e-16 Score=159.93 Aligned_cols=239 Identities=19% Similarity=0.290 Sum_probs=153.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCee-eCC--eeEE
Q 043164 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLV-VDG--RKLF 361 (1049)
Q Consensus 285 ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~-i~G--r~i~ 361 (1049)
..++||||-|...-.|++++.+|..||+|.+|.+.+.. .|.+||+|||.|.+.-+|..||..| +|.. +.| ..|-
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aL--HgSqTmpGASSSLV 94 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINAL--HGSQTMPGASSSLV 94 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHh--cccccCCCCccceE
Confidence 34789999999999999999999999999999999974 7999999999999999999999999 6653 444 5688
Q ss_pred EeecCCCCCCC-----------------CCCCCcccc-----cc----------cccc-------------------CCC
Q 043164 362 FEYSSKPTGGS-----------------GGHYGQESA-----MG----------ARHS-------------------NHK 390 (1049)
Q Consensus 362 V~~A~~p~~~~-----------------~~~~~~~~~-----~~----------~~~~-------------------~~r 390 (1049)
|.|+...+... ..+.+.-.. +. ..++ +.-
T Consensus 95 VK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl 174 (371)
T KOG0146|consen 95 VKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGL 174 (371)
T ss_pred EEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccc
Confidence 88874211100 000000000 00 0000 000
Q ss_pred CCCCC-----------------ccccccccccccccccccccccC------------CCCCCCCcccCC-----------
Q 043164 391 STIPC-----------------DWMCTICGCVNFARRTSCFQCNE------------ARTDDAPPAEMN----------- 430 (1049)
Q Consensus 391 ~~~p~-----------------dw~~~~~~~~n~~~r~~~~~~~~------------~~~~~~~~~~~~----------- 430 (1049)
...|- ..+....+.+.|..... +.... +-+...+.....
T Consensus 175 ~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~-q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y 253 (371)
T KOG0146|consen 175 AAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPP-QPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQY 253 (371)
T ss_pred ccCCcCccccCCCCCcccccccCCcccccccccccCCCC-CCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHH
Confidence 00000 00000011111111000 00000 000000000000
Q ss_pred --------------CCCCC-CCCCCCCCCCCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEE
Q 043164 431 --------------SSNPI-PLGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLH 495 (1049)
Q Consensus 431 --------------~s~~~-~~~~~~~~~~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVe 495 (1049)
...++ ............+.|||-.||....+.+|.+.|-+||.|+..+|..|+.|++|++|+||.
T Consensus 254 ~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVS 333 (371)
T KOG0146|consen 254 AAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVS 333 (371)
T ss_pred hhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEe
Confidence 00000 000011112235789999999999999999999999999999999999999999999999
Q ss_pred eCCHHHHHHHHHHhCCCeeccCCeEEEEEEeecC
Q 043164 496 FHSVEDASKALEATNGTTLEKNGQILRVAYAKSI 529 (1049)
Q Consensus 496 F~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~Ak~k 529 (1049)
|.++..|+.||.+|||+.| +-+.|+|..-+++
T Consensus 334 fDNp~SaQaAIqAMNGFQI--GMKRLKVQLKRPk 365 (371)
T KOG0146|consen 334 FDNPASAQAAIQAMNGFQI--GMKRLKVQLKRPK 365 (371)
T ss_pred cCCchhHHHHHHHhcchhh--hhhhhhhhhcCcc
Confidence 9999999999999999999 6889999886665
No 34
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=1.3e-15 Score=174.28 Aligned_cols=167 Identities=26% Similarity=0.508 Sum_probs=141.8
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEeecCCC
Q 043164 289 IVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYSSKP 368 (1049)
Q Consensus 289 L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~A~~p 368 (1049)
|||.||++.++..+|.++|+.||.|++|++..+. .| ++|| ||+|.+.++|.+||+.| ||..+.|+.|.|......
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~--ng~ll~~kki~vg~~~~~ 153 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKL--NGMLLNGKKIYVGLFERK 153 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHh--cCcccCCCeeEEeeccch
Confidence 9999999999999999999999999999999995 45 9999 99999999999999999 999999999999874211
Q ss_pred CCCCCCCCCccccccccccCCCCCCCCccccccccccccccccccccccCCCCCCCCcccCCCCCCCCCCCCCCCCCCcc
Q 043164 369 TGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKGSDTGPTH 448 (1049)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~r~~~p~dw~~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ps~ 448 (1049)
... . .+..+ ....-.
T Consensus 154 ~er---------------------------~------------------~~~~~--------------------~~~~~t 168 (369)
T KOG0123|consen 154 EER---------------------------E------------------APLGE--------------------YKKRFT 168 (369)
T ss_pred hhh---------------------------c------------------ccccc--------------------hhhhhh
Confidence 100 0 00000 001123
Q ss_pred eEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEEeec
Q 043164 449 VLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYAKS 528 (1049)
Q Consensus 449 ~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~Ak~ 528 (1049)
.++|.|++.+++++.|..+|..||.|..+.|+.+. .+.++||+||+|.++++|..|+..|+|..+ ++..+.|.-+..
T Consensus 169 ~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~-~g~~~~~gfv~f~~~e~a~~av~~l~~~~~--~~~~~~V~~aqk 245 (369)
T KOG0123|consen 169 NVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDS-IGKSKGFGFVNFENPEDAKKAVETLNGKIF--GDKELYVGRAQK 245 (369)
T ss_pred hhheeccccccchHHHHHhhcccCcceEEEEeecC-CCCCCCccceeecChhHHHHHHHhccCCcC--Cccceeeccccc
Confidence 68899999999999999999999999999999986 566999999999999999999999999998 588888887665
No 35
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=1.3e-13 Score=136.92 Aligned_cols=181 Identities=17% Similarity=0.253 Sum_probs=132.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEe
Q 043164 284 APSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFE 363 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~ 363 (1049)
..+++|||+|||.+|.|.+|.++|-+||.|.+|.|..- ...-.||||+|+++.+|..||..- +|..++|..|.|+
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygR--dGYdydg~rLRVE 78 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGR--DGYDYDGCRLRVE 78 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcc--cccccCcceEEEE
Confidence 45689999999999999999999999999999998542 234569999999999999999876 9999999999999
Q ss_pred ecCCCCCCCCCCCCccccccccccCCCCCCCCccccccccccccccccccccccCCCCCCCCcccCCCCCCCCCCCC-CC
Q 043164 364 YSSKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKK-GS 442 (1049)
Q Consensus 364 ~A~~p~~~~~~~~~~~~~~~~~~~~~r~~~p~dw~~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~-~~ 442 (1049)
++..-... .-. --++...... .... .+.. +.
T Consensus 79 fprggr~s--~~~---------------------------~G~y~gggrg---Ggg~----------------gg~rgpp 110 (241)
T KOG0105|consen 79 FPRGGRSS--SDR---------------------------RGSYSGGGRG---GGGG----------------GGRRGPP 110 (241)
T ss_pred eccCCCcc--ccc---------------------------ccccCCCCCC---CCCC----------------CcccCCc
Confidence 96321100 000 0000000000 0000 0000 00
Q ss_pred CCCCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEE
Q 043164 443 DTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILR 522 (1049)
Q Consensus 443 ~~~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~ 522 (1049)
.-.....|+|.+||+....++|++++-+-|.|-...+.+| |.+.|+|...++..-|+..|....|..-|-...
T Consensus 111 srrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~y 183 (241)
T KOG0105|consen 111 SRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAY 183 (241)
T ss_pred ccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhccccccCcCcEee
Confidence 0112358999999999999999999999999999999887 589999999999999999998876643344444
Q ss_pred EE
Q 043164 523 VA 524 (1049)
Q Consensus 523 V~ 524 (1049)
+.
T Consensus 184 ir 185 (241)
T KOG0105|consen 184 IR 185 (241)
T ss_pred EE
Confidence 33
No 36
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.53 E-value=7.9e-14 Score=139.83 Aligned_cols=84 Identities=30% Similarity=0.455 Sum_probs=79.4
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~ 525 (1049)
.+++|||+||+..+++++|+++|++||.|..|.|++|+.++.++|||||+|.+.++|++||+.||+..| +|+.|+|.+
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i--~Gr~l~V~~ 110 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKEL--NGRHIRVNP 110 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE--CCEEEEEEe
Confidence 467899999999999999999999999999999999999999999999999999999999999999988 799999999
Q ss_pred eecCCC
Q 043164 526 AKSILG 531 (1049)
Q Consensus 526 Ak~k~~ 531 (1049)
+..+..
T Consensus 111 a~~~~~ 116 (144)
T PLN03134 111 ANDRPS 116 (144)
T ss_pred CCcCCC
Confidence 977643
No 37
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.53 E-value=4e-14 Score=141.94 Aligned_cols=82 Identities=32% Similarity=0.557 Sum_probs=78.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEe
Q 043164 284 APSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFE 363 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~ 363 (1049)
..+++|||+|||..+||++|+++|++||.|.+|.|+.|+.|+.++|||||+|.+.++|+.||+.| |+..|+|+.|+|.
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~l--ng~~i~Gr~l~V~ 109 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM--DGKELNGRHIRVN 109 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHc--CCCEECCEEEEEE
Confidence 45679999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred ecCC
Q 043164 364 YSSK 367 (1049)
Q Consensus 364 ~A~~ 367 (1049)
++..
T Consensus 110 ~a~~ 113 (144)
T PLN03134 110 PAND 113 (144)
T ss_pred eCCc
Confidence 9743
No 38
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=4.3e-13 Score=144.71 Aligned_cols=82 Identities=13% Similarity=0.340 Sum_probs=77.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEeecC
Q 043164 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYSS 366 (1049)
Q Consensus 287 ~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~A~ 366 (1049)
++|||..+.++.+|+||+.+|+.||+|+.|.|.+++.++..|||+||+|.+...-..|+..| |-+.++|.-|+|..+-
T Consensus 211 nRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasM--NlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 211 NRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASM--NLFDLGGQYLRVGKCV 288 (544)
T ss_pred heEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhc--chhhcccceEeccccc
Confidence 59999999999999999999999999999999999988899999999999999999999999 9999999999999885
Q ss_pred CCCC
Q 043164 367 KPTG 370 (1049)
Q Consensus 367 ~p~~ 370 (1049)
.|.+
T Consensus 289 TPP~ 292 (544)
T KOG0124|consen 289 TPPD 292 (544)
T ss_pred CCCc
Confidence 5443
No 39
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.49 E-value=5.6e-13 Score=136.13 Aligned_cols=221 Identities=21% Similarity=0.295 Sum_probs=129.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe-ecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeC---CeeEE
Q 043164 286 SGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVI-KERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVD---GRKLF 361 (1049)
Q Consensus 286 s~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~-~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~---Gr~i~ 361 (1049)
-+||||.+||.++...+|..+|..|--...+.|. .++....++-+|||.|.+..+|..||.+| ||+.|+ +..|.
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaL--NGvrFDpE~~stLh 111 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNAL--NGVRFDPETGSTLH 111 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHh--cCeeeccccCceeE
Confidence 4799999999999999999999998555444443 34444456689999999999999999999 999997 78899
Q ss_pred EeecCCCCCC----CCCCCCccccccccccCCC-CC-CCCcccccccccccccc-----ccccccccCCCC---CCCCcc
Q 043164 362 FEYSSKPTGG----SGGHYGQESAMGARHSNHK-ST-IPCDWMCTICGCVNFAR-----RTSCFQCNEART---DDAPPA 427 (1049)
Q Consensus 362 V~~A~~p~~~----~~~~~~~~~~~~~~~~~~r-~~-~p~dw~~~~~~~~n~~~-----r~~~~~~~~~~~---~~~~~~ 427 (1049)
|++|...+.. ..++.++....... ...+ +. .+.+-... +..+.-. .....+...... ...+..
T Consensus 112 iElAKSNtK~kr~k~sgtP~~s~al~~~-~~~~~qr~sa~~qhd~--~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~ 188 (284)
T KOG1457|consen 112 IELAKSNTKRKRRKGSGTPGSSPALVID-NRNKEQRKSADDQHDE--GLSDPDELQEPGNADALKENDTTKSEALSAPDS 188 (284)
T ss_pred eeehhcCcccccCCCCCCCCCCcccccc-ccChhhcccchhhccc--cccCccccCCccccccCCCccccchhhhhhhhh
Confidence 9997421110 01111111000000 0000 00 00000000 0000000 000000000000 000000
Q ss_pred cCCCCCC--CCCCCCCCCCCCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHH
Q 043164 428 EMNSSNP--IPLGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKA 505 (1049)
Q Consensus 428 ~~~~s~~--~~~~~~~~~~~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kA 505 (1049)
-.+.++. ....+.......+.+|||-||...+||++|+.+|+.|.....++|.-- .....|||+|.+++.|..|
T Consensus 189 ~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~----~g~~vaf~~~~~~~~at~a 264 (284)
T KOG1457|consen 189 KAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR----GGMPVAFADFEEIEQATDA 264 (284)
T ss_pred cCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC----CCcceEeecHHHHHHHHHH
Confidence 0000000 000111223345789999999999999999999999987766666421 1345899999999999999
Q ss_pred HHHhCCCeec
Q 043164 506 LEATNGTTLE 515 (1049)
Q Consensus 506 l~~LnG~~~~ 515 (1049)
|..|+|..|.
T Consensus 265 m~~lqg~~~s 274 (284)
T KOG1457|consen 265 MNHLQGNLLS 274 (284)
T ss_pred HHHhhcceec
Confidence 9999998874
No 40
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.48 E-value=5.6e-13 Score=144.22 Aligned_cols=198 Identities=16% Similarity=0.273 Sum_probs=139.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCee--------EEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeC
Q 043164 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLR--------HVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVD 356 (1049)
Q Consensus 285 ps~~L~V~nLp~~~tee~L~~~F~~~G~i~--------~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~ 356 (1049)
-+..|||.|||..+|.+++.++|+++|.|. .|+|..+. .|..+|-|.|.|-..+.+..|+..| ++..|.
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~il--De~~~r 209 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKIL--DEDELR 209 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHh--Cccccc
Confidence 346799999999999999999999999874 38899885 5999999999999999999999999 999999
Q ss_pred CeeEEEeecCCCCCCCCCCCCccc--cccccccCCCCCCCCccccccccccccccccccccccCCCCCCCCcccCCCCCC
Q 043164 357 GRKLFFEYSSKPTGGSGGHYGQES--AMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNP 434 (1049)
Q Consensus 357 Gr~i~V~~A~~p~~~~~~~~~~~~--~~~~~~~~~r~~~p~dw~~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~s~~ 434 (1049)
|+.|+|+.|.-...+.-.+.+... ......+........+|.. .+ .
T Consensus 210 g~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~p-------------------d~-~------------ 257 (382)
T KOG1548|consen 210 GKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRP-------------------DR-D------------ 257 (382)
T ss_pred CcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCC-------------------Cc-c------------
Confidence 999999987421100000000000 0000000000000011111 00 0
Q ss_pred CCCCCCCCCCCCcceEEEeCCCcc----Cc-------HHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHH
Q 043164 435 IPLGKKGSDTGPTHVLVVRGLDEY----AD-------EEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDAS 503 (1049)
Q Consensus 435 ~~~~~~~~~~~ps~~LfV~NLp~~----~t-------eedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~ 503 (1049)
.........+|+|+||... .+ .++|.+.|++||.|..|.|.-. .+.|.+-|.|.+.++|.
T Consensus 258 -----~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~----hPdGvvtV~f~n~eeA~ 328 (382)
T KOG1548|consen 258 -----DPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR----HPDGVVTVSFRNNEEAD 328 (382)
T ss_pred -----ccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc----CCCceeEEEeCChHHHH
Confidence 0111123578999999753 23 2667888999999999988733 36789999999999999
Q ss_pred HHHHHhCCCeeccCCeEEEEEEeec
Q 043164 504 KALEATNGTTLEKNGQILRVAYAKS 528 (1049)
Q Consensus 504 kAl~~LnG~~~~i~Gr~L~V~~Ak~ 528 (1049)
.||+.|+|++| +|+.|....-..
T Consensus 329 ~ciq~m~GR~f--dgRql~A~i~DG 351 (382)
T KOG1548|consen 329 QCIQTMDGRWF--DGRQLTASIWDG 351 (382)
T ss_pred HHHHHhcCeee--cceEEEEEEeCC
Confidence 99999999999 799999876433
No 41
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=4.3e-13 Score=155.31 Aligned_cols=184 Identities=24% Similarity=0.362 Sum_probs=138.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhc-----------C-CeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCC
Q 043164 285 PSGTIVVKGLSQKTTEEDLYQILAEW-----------G-PLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDG 352 (1049)
Q Consensus 285 ps~~L~V~nLp~~~tee~L~~~F~~~-----------G-~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng 352 (1049)
....++|++||+.++++.+..+|..- | .+..|.|...++ ||||+|.+.++|..|+.. ++
T Consensus 174 q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~n------fa~ie~~s~~~at~~~~~---~~ 244 (500)
T KOG0120|consen 174 QARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEKN------FAFIEFRSISEATEAMAL---DG 244 (500)
T ss_pred hhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeeccccc------ceeEEecCCCchhhhhcc---cc
Confidence 34689999999999999999999643 3 367777766543 999999999999999954 89
Q ss_pred eeeCCeeEEEeecCCCCCCCCCCCCccccccccccCCCCCCCCccccccccccccccccccccccCCCCCCCCcccCCCC
Q 043164 353 LVVDGRKLFFEYSSKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSS 432 (1049)
Q Consensus 353 ~~i~Gr~i~V~~A~~p~~~~~~~~~~~~~~~~~~~~~r~~~p~dw~~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~s 432 (1049)
+.+.|.++++..- .+ +....|....+.. .....
T Consensus 245 ~~f~g~~~~~~r~---~d--------------------------~~~~p~~~~~~~~--------~~~~~---------- 277 (500)
T KOG0120|consen 245 IIFEGRPLKIRRP---HD--------------------------YQPVPGITLSPSQ--------LGKVG---------- 277 (500)
T ss_pred hhhCCCCceeccc---cc--------------------------ccCCccchhhhcc--------ccccC----------
Confidence 9999999987541 11 1100000000000 00000
Q ss_pred CCCCCCCCCCCCCCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCC
Q 043164 433 NPIPLGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGT 512 (1049)
Q Consensus 433 ~~~~~~~~~~~~~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~ 512 (1049)
............+.|||++||..++++++.+++..||++..+.+++|..+|.++||||++|.++..+.+|+..|||+
T Consensus 278 ---~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm 354 (500)
T KOG0120|consen 278 ---LLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGM 354 (500)
T ss_pred ---CcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchh
Confidence 00000111123468999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCeEEEEEEeecC
Q 043164 513 TLEKNGQILRVAYAKSI 529 (1049)
Q Consensus 513 ~~~i~Gr~L~V~~Ak~k 529 (1049)
.+ +++.|.|..|...
T Consensus 355 ~l--gd~~lvvq~A~~g 369 (500)
T KOG0120|consen 355 QL--GDKKLVVQRAIVG 369 (500)
T ss_pred hh--cCceeEeehhhcc
Confidence 99 6899999987653
No 42
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.45 E-value=5.6e-12 Score=139.19 Aligned_cols=228 Identities=18% Similarity=0.208 Sum_probs=144.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHHh-hcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEee
Q 043164 286 SGTIVVKGLSQKTTEEDLYQILA-EWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEY 364 (1049)
Q Consensus 286 s~~L~V~nLp~~~tee~L~~~F~-~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~ 364 (1049)
.+.+||.|||+++.+++|+++|. +.|+|..|.|..| ..|+++|+|.|||+++|.+++|++.| |...+.|++|.|.-
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~l--nk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKL--NKYEVNGRELVVKE 120 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHh--hhccccCceEEEec
Confidence 34599999999999999999996 6899999999999 58999999999999999999999999 99999999999976
Q ss_pred cCCCCCCC---CCCCCccccccccccCCCCCCCCcccccccc-------cccccccccccc-----ccCCCCCCCCcccC
Q 043164 365 SSKPTGGS---GGHYGQESAMGARHSNHKSTIPCDWMCTICG-------CVNFARRTSCFQ-----CNEARTDDAPPAEM 429 (1049)
Q Consensus 365 A~~p~~~~---~~~~~~~~~~~~~~~~~r~~~p~dw~~~~~~-------~~n~~~r~~~~~-----~~~~~~~~~~~~~~ 429 (1049)
........ ....+.-.|.... ....-|--..-. ...|..+..--. ..............
T Consensus 121 d~d~q~~~~~~~~r~g~~~f~~~~------~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~ 194 (608)
T KOG4212|consen 121 DHDEQRDQYGRIVRDGGGGFGGGG------GVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNY 194 (608)
T ss_pred cCchhhhhhhheeeccCcccccCc------ceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhh
Confidence 42100000 0000000000000 000001100000 000110000000 00000000000000
Q ss_pred CC--CCCCCCC-CCCCCCCCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHH
Q 043164 430 NS--SNPIPLG-KKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKAL 506 (1049)
Q Consensus 430 ~~--s~~~~~~-~~~~~~~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl 506 (1049)
.+ .....+. .......-...+||.||...+....|.+.|.-.|.|..|.+-.|+. |.++|||.++|..+-+|.+||
T Consensus 195 ~lfgl~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKe-G~s~G~~vi~y~hpveavqaI 273 (608)
T KOG4212|consen 195 NLFGLSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKE-GNSRGFAVIEYDHPVEAVQAI 273 (608)
T ss_pred hcccchhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccc-cccCCeeEEEecchHHHHHHH
Confidence 00 0000000 0111222356899999999999999999999999999999988884 589999999999999999999
Q ss_pred HHhCCCeeccCCeEEEEEE
Q 043164 507 EATNGTTLEKNGQILRVAY 525 (1049)
Q Consensus 507 ~~LnG~~~~i~Gr~L~V~~ 525 (1049)
..|++.-+ ..++..+..
T Consensus 274 sml~~~g~--~~~~~~~Rl 290 (608)
T KOG4212|consen 274 SMLDRQGL--FDRRMTVRL 290 (608)
T ss_pred HhhccCCC--ccccceeec
Confidence 99997655 355555554
No 43
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.44 E-value=8.4e-13 Score=154.30 Aligned_cols=208 Identities=23% Similarity=0.278 Sum_probs=138.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEeec
Q 043164 286 SGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYS 365 (1049)
Q Consensus 286 s~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~A 365 (1049)
...|+|+|||..+..++|..+|..||+|..|.|.. .|. -|+|+|.++.+|..|+..| ....+...++.+.|+
T Consensus 385 ~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~---~G~---~aiv~fl~p~eAr~Afrkl--aysr~k~~plyle~a 456 (725)
T KOG0110|consen 385 DTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPP---GGT---GAIVEFLNPLEARKAFRKL--AYSRFKSAPLYLEWA 456 (725)
T ss_pred cceeeeccCccccccHHHHHHhhcccccceeecCc---ccc---eeeeeecCccchHHHHHHh--chhhhccCccccccC
Confidence 46899999999999999999999999999996542 232 5999999999999999999 888888999999885
Q ss_pred CCCCCCCCCCCCccccccccccCCCCCCCCcccccccc--ccccccccccccccCCCCCCCCcccCCCCCCCCCCCCCCC
Q 043164 366 SKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICG--CVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKGSD 443 (1049)
Q Consensus 366 ~~p~~~~~~~~~~~~~~~~~~~~~r~~~p~dw~~~~~~--~~n~~~r~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 443 (1049)
|.+........ .+....... -.+-..+.... ..+..++ .++. ...... ....
T Consensus 457 --P~dvf~~~pka----------------~~~~~e~~~~~ee~~~Er~s~~--d~~v~eD---~d~t-e~ss~a--~~a~ 510 (725)
T KOG0110|consen 457 --PEDVFTEDPKA----------------DDLSAESRSKMEENPSERVSAE--DGQVEED---KDPT-EESSLA--RVAE 510 (725)
T ss_pred --hhhhccCCccc----------------cccccccccccccCcceecccc--ccccccc---CCcc-ccccch--hhhh
Confidence 22111000000 000000000 00000000000 0000000 0000 000000 0001
Q ss_pred CCCcc-eEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCC---CceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCe
Q 043164 444 TGPTH-VLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFT---HVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQ 519 (1049)
Q Consensus 444 ~~ps~-~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~t---g~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr 519 (1049)
...+. +|||.||.+.++.++|..+|.+.|.|..|.|.+-+.. -.|.|||||+|.+.++|+.|+..|+|..| +|.
T Consensus 511 ~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvl--dGH 588 (725)
T KOG0110|consen 511 DEETETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVL--DGH 588 (725)
T ss_pred ccccchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCcee--cCc
Confidence 11122 3999999999999999999999999999988864422 13569999999999999999999999999 799
Q ss_pred EEEEEEeecC
Q 043164 520 ILRVAYAKSI 529 (1049)
Q Consensus 520 ~L~V~~Ak~k 529 (1049)
.|.|.++..+
T Consensus 589 ~l~lk~S~~k 598 (725)
T KOG0110|consen 589 KLELKISENK 598 (725)
T ss_pred eEEEEeccCc
Confidence 9999998843
No 44
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=2e-12 Score=134.26 Aligned_cols=82 Identities=37% Similarity=0.520 Sum_probs=78.5
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~ 525 (1049)
..++|-|.||+.+++|++|+++|-+||.|..|.|.+|+.||.++|||||.|.+.++|++||..|||.-+ ++-.|+|.|
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gy--d~LILrvEw 265 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGY--DNLILRVEW 265 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCccc--ceEEEEEEe
Confidence 467899999999999999999999999999999999999999999999999999999999999999988 789999999
Q ss_pred eecC
Q 043164 526 AKSI 529 (1049)
Q Consensus 526 Ak~k 529 (1049)
+++.
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9885
No 45
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.39 E-value=1.3e-12 Score=150.31 Aligned_cols=81 Identities=21% Similarity=0.459 Sum_probs=77.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEe
Q 043164 284 APSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFE 363 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~ 363 (1049)
..+.+|||+|||..+++++|.++|++||.|..|+|+.|+.||.++|||||+|.+.++|..||+.| ||..|+|+.|+|.
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~l--nG~~~~gr~i~V~ 344 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSL--NGYTLGNRVLQVS 344 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHh--CCCEECCeEEEEE
Confidence 44568999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred ecC
Q 043164 364 YSS 366 (1049)
Q Consensus 364 ~A~ 366 (1049)
|+.
T Consensus 345 ~~~ 347 (352)
T TIGR01661 345 FKT 347 (352)
T ss_pred Ecc
Confidence 963
No 46
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.35 E-value=3.5e-12 Score=110.81 Aligned_cols=70 Identities=30% Similarity=0.660 Sum_probs=67.4
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEE
Q 043164 289 IVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLF 361 (1049)
Q Consensus 289 L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~ 361 (1049)
|||+|||..+|+++|+++|+.||.|..+.++.+ .++..+|||||+|.+.++|..|++.| +|..|.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l--~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEEL--NGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHH--TTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHc--CCCEECccCcC
Confidence 799999999999999999999999999999998 68999999999999999999999999 99999999885
No 47
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.34 E-value=1.3e-11 Score=139.30 Aligned_cols=170 Identities=20% Similarity=0.309 Sum_probs=128.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEee
Q 043164 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEY 364 (1049)
Q Consensus 285 ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~ 364 (1049)
....|-+++||+++|+++|.+||+.++ |.++.+.+ .+|+..|-|||+|.+.+++.+||+. +...+..+-|.|--
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alkk---dR~~mg~RYIEVf~ 82 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKALKK---DRESMGHRYIEVFT 82 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHHHh---hHHHhCCceEEEEc
Confidence 446788999999999999999999885 55655554 5899999999999999999999976 88889999999865
Q ss_pred cCCCCCCCCCCCCccccccccccCCCCCCCCccccccccccccccccccccccCCCCCCCCcccCCCCCCCCCCCCCCCC
Q 043164 365 SSKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKGSDT 444 (1049)
Q Consensus 365 A~~p~~~~~~~~~~~~~~~~~~~~~r~~~p~dw~~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 444 (1049)
+.. ...||.-.. ..+. . .
T Consensus 83 ~~~-------------------------~e~d~~~~~---------------~g~~--------------------s--~ 100 (510)
T KOG4211|consen 83 AGG-------------------------AEADWVMRP---------------GGPN--------------------S--S 100 (510)
T ss_pred cCC-------------------------ccccccccC---------------CCCC--------------------C--C
Confidence 421 112343210 0000 0 0
Q ss_pred CCcceEEEeCCCccCcHHHHHHHhhccCCeee-EEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEE
Q 043164 445 GPTHVLVVRGLDEYADEEMLRYEFSKHAPIKD-LRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRV 523 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~-v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V 523 (1049)
.+..+|-|++||+.++++||.++|+..-.|.. |.++.+. .+.+.|-|||+|++.+.|++||.. |...| +.+-|.|
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~r-hre~i--GhRYIEv 176 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGR-HRENI--GHRYIEV 176 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHH-HHHhh--ccceEEe
Confidence 13458999999999999999999998876655 5556665 566899999999999999999875 33334 6777777
Q ss_pred EEe
Q 043164 524 AYA 526 (1049)
Q Consensus 524 ~~A 526 (1049)
..+
T Consensus 177 F~S 179 (510)
T KOG4211|consen 177 FRS 179 (510)
T ss_pred ehh
Confidence 654
No 48
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.32 E-value=6.2e-12 Score=147.60 Aligned_cols=75 Identities=24% Similarity=0.451 Sum_probs=70.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEE
Q 043164 283 VAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFF 362 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V 362 (1049)
..-++|||||+|+..++|.+|.++|+.||+|.+|.|+.. +|+|||.+.+..+|.+||..| +...+.++.|+|
T Consensus 418 sV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl--~n~kv~~k~Iki 489 (894)
T KOG0132|consen 418 SVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKL--SNVKVADKTIKI 489 (894)
T ss_pred eEeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHH--hcccccceeeEE
Confidence 345789999999999999999999999999999999875 679999999999999999999 899999999999
Q ss_pred eec
Q 043164 363 EYS 365 (1049)
Q Consensus 363 ~~A 365 (1049)
.|+
T Consensus 490 ~Wa 492 (894)
T KOG0132|consen 490 AWA 492 (894)
T ss_pred eee
Confidence 997
No 49
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=4.8e-12 Score=132.49 Aligned_cols=166 Identities=23% Similarity=0.386 Sum_probs=128.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEeecC
Q 043164 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYSS 366 (1049)
Q Consensus 287 ~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~A~ 366 (1049)
..|||++||..+.+.+|..||..||.|.+|.|.. ||+||+|.++.+|..|+..| ++..|.|-.+.|+|+.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l--~~~~l~~e~~vve~~r 71 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDL--DGKELCGERLVVEHAR 71 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchh--cCceecceeeeeeccc
Confidence 4699999999999999999999999999998853 49999999999999999999 9999999889999863
Q ss_pred CCCCCCCCCCCccccccccccCCCCCCCCccccccccccccccccccccccCCCCCCCCcccCCCCCCCCCCCCCCCCCC
Q 043164 367 KPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKGSDTGP 446 (1049)
Q Consensus 367 ~p~~~~~~~~~~~~~~~~~~~~~r~~~p~dw~~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~p 446 (1049)
......+.+.+.. + ..|.. ........
T Consensus 72 ~~~~~~g~~~~g~----------r----~~~~~---------------------------------------~~~~p~~s 98 (216)
T KOG0106|consen 72 GKRRGRGRPRGGD----------R----RSDSR---------------------------------------RYRPPSRT 98 (216)
T ss_pred ccccccCCCCCCC----------c----cchhh---------------------------------------ccCCcccc
Confidence 2111110000000 0 00000 00001112
Q ss_pred cceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEE
Q 043164 447 THVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525 (1049)
Q Consensus 447 s~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~ 525 (1049)
...|+|.||...+.+.+|.+.|.++|.+....+ .++++||+|...++|.+|+..|+|..| .++.|.+..
T Consensus 99 ~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~--~~~~l~~~~ 167 (216)
T KOG0106|consen 99 HFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKL--NGRRISVEK 167 (216)
T ss_pred cceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhh--cCceeeecc
Confidence 468999999999999999999999999955544 356999999999999999999999999 699999933
No 50
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.30 E-value=1.2e-11 Score=107.38 Aligned_cols=70 Identities=41% Similarity=0.619 Sum_probs=66.5
Q ss_pred EEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEE
Q 043164 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILR 522 (1049)
Q Consensus 450 LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~ 522 (1049)
|||+|||..+++++|+++|++||.|..+.++.+ .++..+|+|||+|.+.++|.+|++.|+|..| +|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~--~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKI--NGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEE--TTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEE--CccCcC
Confidence 799999999999999999999999999999997 5788999999999999999999999999988 798885
No 51
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.30 E-value=2.8e-11 Score=131.69 Aligned_cols=171 Identities=25% Similarity=0.376 Sum_probs=121.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEeec
Q 043164 286 SGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYS 365 (1049)
Q Consensus 286 s~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~A 365 (1049)
..+|||+|||..+|+++|.++|..||+|..|.|+.++.++.++|||||+|.+.++|..|+..| ++..|.|+.|.|.++
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~--~~~~~~~~~~~v~~~ 192 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEEL--NGKELEGRPLRVQKA 192 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHc--CCCeECCceeEeecc
Confidence 689999999999999999999999999999999999989999999999999999999999999 999999999999985
Q ss_pred CCCCCCCCCCCCccccccccccCCCCCCCCccccccccccccccccccccccCCCCCCCCcccCCCCCCCCCCCCCCCCC
Q 043164 366 SKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKGSDTG 445 (1049)
Q Consensus 366 ~~p~~~~~~~~~~~~~~~~~~~~~r~~~p~dw~~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 445 (1049)
..... +. ..+.+. + ...+.. .. .........
T Consensus 193 ~~~~~----~~------------------~~~~~~-~-~~~~~~----------~~---------------~~~~~~~~~ 223 (306)
T COG0724 193 QPASQ----PR------------------SELSNN-L-DASFAK----------KL---------------SRGKALLLE 223 (306)
T ss_pred ccccc----cc------------------cccccc-c-chhhhc----------cc---------------ccccccccc
Confidence 21000 00 000000 0 000000 00 000011112
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHH
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALE 507 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~ 507 (1049)
....+++.+++..++...+..+|..+|.+..+.+...........+.++.+.....+...+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (306)
T COG0724 224 KSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNS 285 (306)
T ss_pred ccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhc
Confidence 35689999999999999999999999999777776654433344444444444444444433
No 52
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=6.6e-12 Score=130.49 Aligned_cols=79 Identities=30% Similarity=0.566 Sum_probs=76.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEee
Q 043164 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEY 364 (1049)
Q Consensus 285 ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~ 364 (1049)
..++|-|.||+.+++|++|.++|.+||+|..|.|.+|+.||.+||||||.|.+.++|.+||+.| ||.-++.-.|.|+|
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~L--nG~gyd~LILrvEw 265 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADL--NGYGYDNLILRVEW 265 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHc--cCcccceEEEEEEe
Confidence 3578999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred c
Q 043164 365 S 365 (1049)
Q Consensus 365 A 365 (1049)
+
T Consensus 266 s 266 (270)
T KOG0122|consen 266 S 266 (270)
T ss_pred c
Confidence 7
No 53
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.29 E-value=7.9e-12 Score=142.65 Aligned_cols=81 Identities=32% Similarity=0.465 Sum_probs=77.4
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~ 525 (1049)
..++|||+|||.++++++|+++|+.||.|+.|+|++|+.++.++|||||+|.+.++|.+||+.|||..| .++.|+|.|
T Consensus 106 ~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l--~gr~i~V~~ 183 (346)
T TIGR01659 106 SGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITV--RNKRLKVSY 183 (346)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCcc--CCceeeeec
Confidence 467999999999999999999999999999999999999999999999999999999999999999988 699999999
Q ss_pred eec
Q 043164 526 AKS 528 (1049)
Q Consensus 526 Ak~ 528 (1049)
+++
T Consensus 184 a~p 186 (346)
T TIGR01659 184 ARP 186 (346)
T ss_pred ccc
Confidence 865
No 54
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.29 E-value=4.9e-12 Score=119.16 Aligned_cols=82 Identities=28% Similarity=0.458 Sum_probs=78.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEE
Q 043164 282 AVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLF 361 (1049)
Q Consensus 282 ~~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~ 361 (1049)
....+++|||+||++.+||++|.++|+.+|+|..|.|-.|+.+..+-|||||+|.+.++|..||..+ +|+.++.++|.
T Consensus 32 a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~Alryi--sgtrLddr~ir 109 (153)
T KOG0121|consen 32 ALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYI--SGTRLDDRPIR 109 (153)
T ss_pred HHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHh--ccCccccccee
Confidence 3456899999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred Eeec
Q 043164 362 FEYS 365 (1049)
Q Consensus 362 V~~A 365 (1049)
|.|.
T Consensus 110 ~D~D 113 (153)
T KOG0121|consen 110 IDWD 113 (153)
T ss_pred eecc
Confidence 9984
No 55
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.28 E-value=1.3e-11 Score=108.01 Aligned_cols=70 Identities=41% Similarity=0.776 Sum_probs=65.1
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEE
Q 043164 289 IVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLF 361 (1049)
Q Consensus 289 L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~ 361 (1049)
|||+|||+.+++++|.++|+.||.|..|.++.++. +.++|+|||+|.+.++|..|++.+ ++..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~--~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELL--NGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHH--TTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHC--CCcEECCEEcC
Confidence 79999999999999999999999999999999976 999999999999999999999998 89999999884
No 56
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.28 E-value=4.4e-12 Score=131.49 Aligned_cols=77 Identities=29% Similarity=0.493 Sum_probs=72.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEeec
Q 043164 286 SGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYS 365 (1049)
Q Consensus 286 s~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~A 365 (1049)
-++||||+|++.++.+.|++.|++||+|+++.||.|+.||+||||+||.|++.+.|++||+. ..-.|+||+..++.|
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d---p~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD---PNPIIDGRKANCNLA 88 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC---CCCcccccccccchh
Confidence 36899999999999999999999999999999999999999999999999999999999976 567899999999886
No 57
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.28 E-value=5.4e-13 Score=132.55 Aligned_cols=80 Identities=24% Similarity=0.520 Sum_probs=77.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEe
Q 043164 284 APSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFE 363 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~ 363 (1049)
..+.-|||||||+.+||.+|.-+|++||+|++|.|++|+.||.|+||||+.|.+......|+..| ||+.|.||.|+|.
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~--NGiki~gRtirVD 110 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNL--NGIKILGRTIRVD 110 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEecc--CCceecceeEEee
Confidence 56789999999999999999999999999999999999999999999999999999999999999 9999999999998
Q ss_pred ec
Q 043164 364 YS 365 (1049)
Q Consensus 364 ~A 365 (1049)
..
T Consensus 111 Hv 112 (219)
T KOG0126|consen 111 HV 112 (219)
T ss_pred ec
Confidence 75
No 58
>PF01585 G-patch: G-patch domain; InterPro: IPR000467 The D111/G-patch domain [] is a short conserved region of about 40 amino acids which occurs in a number of putative RNA-binding proteins, including tumor suppressor and DNA-damage-repair proteins, suggesting that this domain may have an RNA binding function. This domain has seven highly conserved glycines. A multiple alignment of a small subset of D111/G-patch domains is shown in Fig. 2b of [].; GO: 0003676 nucleic acid binding, 0005622 intracellular
Probab=99.27 E-value=4e-12 Score=101.18 Aligned_cols=45 Identities=38% Similarity=0.950 Sum_probs=42.9
Q ss_pred CCcHHHHHHHhcCCCCCCCCCCCCCCcccceeEEEccCCcccccc
Q 043164 973 ENNVGNRMLRSMGWHEGLGLGKDGSGMIEPVQAQAMDSRAGLGSQ 1017 (1049)
Q Consensus 973 ~~n~g~~ml~~mGw~~G~gLG~~~~G~~~pi~~~~~~~~~GlG~~ 1017 (1049)
.+|+|++||++|||++|+|||++.+|+++||++..+.++.|||+.
T Consensus 1 t~~~g~~lm~kmGw~~G~GLGk~~~G~~~pi~~~~~~~~~GlG~~ 45 (45)
T PF01585_consen 1 TSSIGFKLMKKMGWKPGQGLGKNGQGIAEPIEVKKKKDRKGLGAE 45 (45)
T ss_pred CCcHHHHHHHHCCCCCCcCCCcCCccCCcceEEeeEcCCccccCC
Confidence 379999999999999999999999999999999999999999974
No 59
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.27 E-value=1.5e-11 Score=131.08 Aligned_cols=81 Identities=27% Similarity=0.625 Sum_probs=77.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEE
Q 043164 283 VAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFF 362 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V 362 (1049)
..|-+||||+-|+..++|..|+..|+.||+|..|.|+.|+.||.++|||||+|.+.-+...|.+.. +|++|+|+.|.|
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~a--dG~~Idgrri~V 175 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDA--DGIKIDGRRILV 175 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhc--cCceecCcEEEE
Confidence 356789999999999999999999999999999999999999999999999999999999999998 999999999999
Q ss_pred eec
Q 043164 363 EYS 365 (1049)
Q Consensus 363 ~~A 365 (1049)
.+-
T Consensus 176 DvE 178 (335)
T KOG0113|consen 176 DVE 178 (335)
T ss_pred Eec
Confidence 983
No 60
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.26 E-value=7.1e-11 Score=128.56 Aligned_cols=174 Identities=22% Similarity=0.366 Sum_probs=140.3
Q ss_pred ccCCCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCee
Q 043164 280 HYAVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRK 359 (1049)
Q Consensus 280 ~~~~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~ 359 (1049)
+....++-.|.|++|-..++|.+|.+.++.||+|.-|.++..+. .|.|+|++.+-|..++.....+.+.|.|+.
T Consensus 25 phk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r------~alvefedi~~akn~Vnfaa~n~i~i~gq~ 98 (494)
T KOG1456|consen 25 PHKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKR------QALVEFEDIEGAKNCVNFAADNQIYIAGQQ 98 (494)
T ss_pred CCCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccccc------eeeeeeccccchhhheehhccCcccccCch
Confidence 44557788999999999999999999999999998888877543 899999999999999987777888888988
Q ss_pred EEEeecCCCCCCCCCCCCccccccccccCCCCCCCCccccccccccccccccccccccCCCCCCCCcccCCCCCCCCCCC
Q 043164 360 LFFEYSSKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGK 439 (1049)
Q Consensus 360 i~V~~A~~p~~~~~~~~~~~~~~~~~~~~~r~~~p~dw~~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 439 (1049)
..++|++... +.. +..+
T Consensus 99 Al~NyStsq~---------------------i~R-------------------------~g~e----------------- 115 (494)
T KOG1456|consen 99 ALFNYSTSQC---------------------IER-------------------------PGDE----------------- 115 (494)
T ss_pred hhcccchhhh---------------------hcc-------------------------CCCC-----------------
Confidence 8888862100 000 0000
Q ss_pred CCCCCCCcceEEEe--CCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccC
Q 043164 440 KGSDTGPTHVLVVR--GLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKN 517 (1049)
Q Consensus 440 ~~~~~~ps~~LfV~--NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~ 517 (1049)
...+..+|++. |--..+|.+.|..+|.+.|.|..|.|++- +| -.|.|+|.+++.|++|..+|||..|+.+
T Consensus 116 ---s~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ng---VQAmVEFdsv~~AqrAk~alNGADIYsG 187 (494)
T KOG1456|consen 116 ---SATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NG---VQAMVEFDSVEVAQRAKAALNGADIYSG 187 (494)
T ss_pred ---CCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cc---eeeEEeechhHHHHHHHhhccccccccc
Confidence 11244566554 44566999999999999999999999874 33 3799999999999999999999999988
Q ss_pred CeEEEEEEeecCC
Q 043164 518 GQILRVAYAKSIL 530 (1049)
Q Consensus 518 Gr~L~V~~Ak~k~ 530 (1049)
-.+|+|.||++..
T Consensus 188 CCTLKIeyAkP~r 200 (494)
T KOG1456|consen 188 CCTLKIEYAKPTR 200 (494)
T ss_pred ceeEEEEecCcce
Confidence 8999999999964
No 61
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.23 E-value=1.3e-11 Score=124.94 Aligned_cols=81 Identities=38% Similarity=0.567 Sum_probs=77.1
Q ss_pred cceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEEe
Q 043164 447 THVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYA 526 (1049)
Q Consensus 447 s~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~A 526 (1049)
...|.|-||.+-++.++|+.+|++||.|.+|.|+.|+.|.+++|||||.|....+|+.||++|+|..| +|+.|+|.+|
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~l--dgRelrVq~a 90 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVL--DGRELRVQMA 90 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceee--ccceeeehhh
Confidence 45899999999999999999999999999999999999999999999999999999999999999999 7999999998
Q ss_pred ecC
Q 043164 527 KSI 529 (1049)
Q Consensus 527 k~k 529 (1049)
+-.
T Consensus 91 ryg 93 (256)
T KOG4207|consen 91 RYG 93 (256)
T ss_pred hcC
Confidence 653
No 62
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.23 E-value=1.3e-11 Score=124.91 Aligned_cols=82 Identities=30% Similarity=0.560 Sum_probs=77.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEE
Q 043164 283 VAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFF 362 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V 362 (1049)
...-..|.|-||.+.+|.++|+.+|++||.|-+|.|..|+.|+.++|||||.|....+|+.||++| +|.+|+|+.|.|
T Consensus 10 v~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~dam--DG~~ldgRelrV 87 (256)
T KOG4207|consen 10 VEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAM--DGAVLDGRELRV 87 (256)
T ss_pred cccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhh--cceeeccceeee
Confidence 344578999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred eecC
Q 043164 363 EYSS 366 (1049)
Q Consensus 363 ~~A~ 366 (1049)
++|.
T Consensus 88 q~ar 91 (256)
T KOG4207|consen 88 QMAR 91 (256)
T ss_pred hhhh
Confidence 9973
No 63
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.23 E-value=1.7e-12 Score=129.03 Aligned_cols=83 Identities=29% Similarity=0.402 Sum_probs=77.6
Q ss_pred cceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEEe
Q 043164 447 THVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYA 526 (1049)
Q Consensus 447 s~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~A 526 (1049)
+..|||+|||+.+||.||..+|++||.|++|.|++|+.||+|+||||+.|.+......|+..|||..| .|+.|+|...
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki--~gRtirVDHv 112 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKI--LGRTIRVDHV 112 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCcee--cceeEEeeec
Confidence 56899999999999999999999999999999999999999999999999999999999999999998 6999999986
Q ss_pred ecCCC
Q 043164 527 KSILG 531 (1049)
Q Consensus 527 k~k~~ 531 (1049)
.....
T Consensus 113 ~~Yk~ 117 (219)
T KOG0126|consen 113 SNYKK 117 (219)
T ss_pred ccccC
Confidence 55433
No 64
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.21 E-value=2.2e-11 Score=120.85 Aligned_cols=74 Identities=28% Similarity=0.531 Sum_probs=70.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEeec
Q 043164 286 SGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYS 365 (1049)
Q Consensus 286 s~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~A 365 (1049)
.++|||+||+..+++.+|..+|..||+|..|.|...+ -|||||||+++.+|..|+..| +|..|+|..|.|+++
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~L--DG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYL--DGKDICGSRIRVELS 82 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhc--CCccccCceEEEEee
Confidence 5799999999999999999999999999999998853 679999999999999999999 999999999999997
Q ss_pred C
Q 043164 366 S 366 (1049)
Q Consensus 366 ~ 366 (1049)
+
T Consensus 83 ~ 83 (195)
T KOG0107|consen 83 T 83 (195)
T ss_pred c
Confidence 5
No 65
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.21 E-value=2.4e-11 Score=114.53 Aligned_cols=79 Identities=29% Similarity=0.474 Sum_probs=75.4
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~ 525 (1049)
.+++|||+||++.++||+|.++|++.|.|..|.+-.|+.+....|||||+|.+.++|..||..++|..| +.++|+|.|
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrL--ddr~ir~D~ 112 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRL--DDRPIRIDW 112 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcc--cccceeeec
Confidence 468999999999999999999999999999999999998889999999999999999999999999999 799999998
Q ss_pred e
Q 043164 526 A 526 (1049)
Q Consensus 526 A 526 (1049)
-
T Consensus 113 D 113 (153)
T KOG0121|consen 113 D 113 (153)
T ss_pred c
Confidence 4
No 66
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.21 E-value=8.1e-11 Score=102.89 Aligned_cols=70 Identities=43% Similarity=0.678 Sum_probs=64.6
Q ss_pred EEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEE
Q 043164 450 LVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILR 522 (1049)
Q Consensus 450 LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~ 522 (1049)
|||+|||+.+++++|+++|+.||.|..|.+..++. +..+|+|||+|.+.++|..|++.++|..| +|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~--~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEI--DGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEE--TTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEE--CCEEcC
Confidence 79999999999999999999999999999999986 89999999999999999999999999988 798874
No 67
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.19 E-value=4e-10 Score=124.35 Aligned_cols=191 Identities=22% Similarity=0.294 Sum_probs=137.6
Q ss_pred CceEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEee
Q 043164 286 SGTIVVKGLSQ-KTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEY 364 (1049)
Q Consensus 286 s~~L~V~nLp~-~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~ 364 (1049)
+..|.|.||.. .+|.+.|..+|.-||.|..|+|..++. --|.|+|.+...|..||+.| +|..|.|+.|+|.+
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL--~g~~l~gk~lrvt~ 369 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHL--EGHKLYGKKLRVTL 369 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHh--hcceecCceEEEee
Confidence 57888999976 589999999999999999999998753 37999999999999999999 99999999999999
Q ss_pred cCCCCCCCCCCCCccccccccccCCCCCCCCccccccccccccccccccccccCCCCCCCCcccCCCCCCCCCCCCCC--
Q 043164 365 SSKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKGS-- 442 (1049)
Q Consensus 365 A~~p~~~~~~~~~~~~~~~~~~~~~r~~~p~dw~~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~-- 442 (1049)
+..+.-.. ...+++. .....|+... ....|. . | +....
T Consensus 370 SKH~~vql-p~egq~d----------~glT~dy~~s--pLhrfk-------k--p------------------gsKN~~n 409 (492)
T KOG1190|consen 370 SKHTNVQL-PREGQED----------QGLTKDYGNS--PLHRFK-------K--P------------------GSKNYQN 409 (492)
T ss_pred ccCccccC-CCCCCcc----------ccccccCCCC--chhhcc-------C--c------------------ccccccc
Confidence 74321100 0011100 0001111110 000000 0 0 00000
Q ss_pred CCCCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEE
Q 043164 443 DTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILR 522 (1049)
Q Consensus 443 ~~~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~ 522 (1049)
--.|+.+|.+.|||.+++||+|+.+|..-|..+....... +.+-+|++++.++++|..|+-.|+...+. .+..|+
T Consensus 410 i~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~----kd~kmal~q~~sveeA~~ali~~hnh~lg-en~hlR 484 (492)
T KOG1190|consen 410 IFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQ----KDRKMALPQLESVEEAIQALIDLHNHYLG-ENHHLR 484 (492)
T ss_pred cCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecC----CCcceeecccCChhHhhhhccccccccCC-CCceEE
Confidence 1136789999999999999999999999987755543322 23459999999999999999999998884 556999
Q ss_pred EEEeec
Q 043164 523 VAYAKS 528 (1049)
Q Consensus 523 V~~Ak~ 528 (1049)
|+|.+.
T Consensus 485 vSFSks 490 (492)
T KOG1190|consen 485 VSFSKS 490 (492)
T ss_pred EEeecc
Confidence 999876
No 68
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.18 E-value=7.5e-10 Score=122.22 Aligned_cols=213 Identities=19% Similarity=0.254 Sum_probs=134.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeC--CeeEEEee
Q 043164 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVD--GRKLFFEY 364 (1049)
Q Consensus 287 ~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~--Gr~i~V~~ 364 (1049)
-+++|.|+-+-+|-+-|..+|++||.|..|.-.. |+.| --|.|+|.+.+.|..|...| +|..|- -++|+|.|
T Consensus 151 Lr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~-Knn~---FQALvQy~d~~sAq~AK~aL--dGqnIyngcCtLrId~ 224 (492)
T KOG1190|consen 151 LRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFT-KNNG---FQALVQYTDAVSAQAAKLAL--DGQNIYNGCCTLRIDF 224 (492)
T ss_pred EEEEeccceeeeEHHHHHHHHhhcceeEEEEEEe-cccc---hhhhhhccchhhHHHHHHhc--cCCcccCceeEEEeeh
Confidence 3789999999999999999999999997665433 2222 14999999999999999999 787764 36888888
Q ss_pred cCCCCCCCCCCCCccccccccccCCCCCCCCcccccccccccc----ccc-cccccccCCCCCCCCcccCCCCCCCCCCC
Q 043164 365 SSKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNF----ARR-TSCFQCNEARTDDAPPAEMNSSNPIPLGK 439 (1049)
Q Consensus 365 A~~p~~~~~~~~~~~~~~~~~~~~~r~~~p~dw~~~~~~~~n~----~~r-~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 439 (1049)
+.--. +...+.+++. .|+..+....... ... ...|. ..+.....+. .++.......+.
T Consensus 225 Sklt~------------LnvKynndkS---RDyTnp~LP~gd~~p~l~~~~~aa~~-~~~~~~g~p~-aip~~~~~a~~a 287 (492)
T KOG1190|consen 225 SKLTD------------LNVKYNNDKS---RDYTNPDLPVGDGQPSLDQLMAAAFG-SVPAVHGAPL-AIPSGAAGANAA 287 (492)
T ss_pred hhccc------------ceeecccccc---ccccCCCCCCCccccccchhhhcccc-ccccccCCcc-cCCccchhhccc
Confidence 63100 0011111111 1111111100000 000 00000 0000000000 000000000011
Q ss_pred CCCCCCC--cceEEEeCCCcc-CcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeecc
Q 043164 440 KGSDTGP--THVLVVRGLDEY-ADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEK 516 (1049)
Q Consensus 440 ~~~~~~p--s~~LfV~NLp~~-~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i 516 (1049)
.+....+ +.+|.|.||... +|.+.|..+|+-||.|..|+|+..+. --|+|+|.+...|+.|++.|+|..|.
T Consensus 288 ~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~- 361 (492)
T KOG1190|consen 288 DGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLY- 361 (492)
T ss_pred ccccccCCCceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceec-
Confidence 0111112 578999999755 89999999999999999999998753 47999999999999999999999994
Q ss_pred CCeEEEEEEeecC
Q 043164 517 NGQILRVAYAKSI 529 (1049)
Q Consensus 517 ~Gr~L~V~~Ak~k 529 (1049)
|+.|+|.+.+..
T Consensus 362 -gk~lrvt~SKH~ 373 (492)
T KOG1190|consen 362 -GKKLRVTLSKHT 373 (492)
T ss_pred -CceEEEeeccCc
Confidence 899999998764
No 69
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.17 E-value=1e-10 Score=140.23 Aligned_cols=73 Identities=25% Similarity=0.439 Sum_probs=67.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhc--CCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEE
Q 043164 285 PSGTIVVKGLSQKTTEEDLYQILAEW--GPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFF 362 (1049)
Q Consensus 285 ps~~L~V~nLp~~~tee~L~~~F~~~--G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V 362 (1049)
..++|||+||+..+|+++|+++|+.| |.|..|.+++ +||||+|.+.++|.+||+.| |+..|+|+.|.|
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~l--nG~~i~Gr~I~V 301 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMDEL--NGKELEGSEIEV 301 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHHHh--CCCEECCEEEEE
Confidence 45789999999999999999999999 9999998764 49999999999999999999 999999999999
Q ss_pred eecCC
Q 043164 363 EYSSK 367 (1049)
Q Consensus 363 ~~A~~ 367 (1049)
.|+..
T Consensus 302 ~~Akp 306 (578)
T TIGR01648 302 TLAKP 306 (578)
T ss_pred EEccC
Confidence 99843
No 70
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.17 E-value=3.7e-11 Score=114.12 Aligned_cols=81 Identities=22% Similarity=0.531 Sum_probs=77.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEe
Q 043164 284 APSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFE 363 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~ 363 (1049)
...-.|||.++...+||++|.+.|..||+|.+|.|..|+.||..||||+|+|.+.++|+.||..| ||..|.|..|.|.
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~--Ng~~ll~q~v~VD 147 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDAL--NGAELLGQNVSVD 147 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhc--cchhhhCCceeEE
Confidence 34568999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred ecC
Q 043164 364 YSS 366 (1049)
Q Consensus 364 ~A~ 366 (1049)
||-
T Consensus 148 w~F 150 (170)
T KOG0130|consen 148 WCF 150 (170)
T ss_pred EEE
Confidence 984
No 71
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.16 E-value=1e-10 Score=125.75 Aligned_cols=74 Identities=19% Similarity=0.286 Sum_probs=69.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEeec
Q 043164 286 SGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYS 365 (1049)
Q Consensus 286 s~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~A 365 (1049)
.++|||+|||+.+||++|+++|+.||.|.+|.|+.++. .+|||||+|.+.++|..||. | +|..|.|+.|.|.++
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-L--nG~~l~gr~V~Vt~a 77 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-L--SGATIVDQSVTITPA 77 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-h--cCCeeCCceEEEEec
Confidence 47999999999999999999999999999999998853 57899999999999999994 7 999999999999986
No 72
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.15 E-value=1.3e-10 Score=123.84 Aligned_cols=82 Identities=35% Similarity=0.580 Sum_probs=77.8
Q ss_pred CCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEE
Q 043164 445 GPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVA 524 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~ 524 (1049)
.|-+||||.-|+.+++|..|+.+|+.||+|+.|.||+|+.||+++|||||+|...-+...|.+..+|..| +|+.|.|.
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~I--dgrri~VD 176 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKI--DGRRILVD 176 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCcee--cCcEEEEE
Confidence 4778999999999999999999999999999999999999999999999999999999999999999988 89999999
Q ss_pred Eeec
Q 043164 525 YAKS 528 (1049)
Q Consensus 525 ~Ak~ 528 (1049)
+-..
T Consensus 177 vERg 180 (335)
T KOG0113|consen 177 VERG 180 (335)
T ss_pred eccc
Confidence 8443
No 73
>PLN03213 repressor of silencing 3; Provisional
Probab=99.12 E-value=1.4e-10 Score=129.68 Aligned_cols=75 Identities=28% Similarity=0.518 Sum_probs=70.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCH--HHHHHHHHHhcCCCeeeCCeeEEE
Q 043164 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSV--GAARAMMDRIGDDGLVVDGRKLFF 362 (1049)
Q Consensus 285 ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~--e~A~~Al~~l~~ng~~i~Gr~i~V 362 (1049)
...+||||||++.+|+++|..+|..||.|..|.|+ +.+| ||||||+|.+. .++.+||..| ||..+.|+.|+|
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaL--NGAEWKGR~LKV 82 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTY--NGCVWKGGRLRL 82 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHh--cCCeecCceeEE
Confidence 34789999999999999999999999999999999 4577 99999999988 7899999999 999999999999
Q ss_pred eec
Q 043164 363 EYS 365 (1049)
Q Consensus 363 ~~A 365 (1049)
+.|
T Consensus 83 NKA 85 (759)
T PLN03213 83 EKA 85 (759)
T ss_pred eec
Confidence 987
No 74
>smart00362 RRM_2 RNA recognition motif.
Probab=99.12 E-value=3.2e-10 Score=97.60 Aligned_cols=72 Identities=36% Similarity=0.682 Sum_probs=67.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEe
Q 043164 288 TIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFE 363 (1049)
Q Consensus 288 ~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~ 363 (1049)
+|||+|||..+++++|+++|..||+|..+.++.++ +.++|+|||+|.+.++|..|+..| ++..|.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~--~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEAL--NGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHh--CCcEECCEEEeeC
Confidence 58999999999999999999999999999999876 788999999999999999999999 8999999999873
No 75
>smart00443 G_patch glycine rich nucleic binding domain. A predicted glycine rich nucleic binding domain found in the splicing factor 45, SON DNA binding protein and D-type Retrovirus- polyproteins.
Probab=99.11 E-value=6.8e-11 Score=95.41 Aligned_cols=46 Identities=48% Similarity=1.015 Sum_probs=43.8
Q ss_pred CCCCcHHHHHHHhcCCCCCCCCCCCCCCcccceeEEEccCCccccc
Q 043164 971 IDENNVGNRMLRSMGWHEGLGLGKDGSGMIEPVQAQAMDSRAGLGS 1016 (1049)
Q Consensus 971 i~~~n~g~~ml~~mGw~~G~gLG~~~~G~~~pi~~~~~~~~~GlG~ 1016 (1049)
++.+++|++||.+|||++|+|||++.||+++||++..+.++.|||.
T Consensus 1 ~~~~~~g~~~l~~mGw~~G~GLG~~~~g~~~pi~~~~~~~~~GlG~ 46 (47)
T smart00443 1 ISTSNIGYKLLRKMGWKEGQGLGKNEQGIVEPISAEIKKDRKGLGA 46 (47)
T ss_pred CCcccHHHHHHHHcCCCCCCcCCCCCCcCccceeEeeccCCcCcCC
Confidence 3678999999999999999999999999999999999999999996
No 76
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.11 E-value=3e-10 Score=122.12 Aligned_cols=78 Identities=19% Similarity=0.227 Sum_probs=71.5
Q ss_pred cceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEEe
Q 043164 447 THVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYA 526 (1049)
Q Consensus 447 s~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~A 526 (1049)
.++|||+||++.+++++|+++|+.||.|..|.|+.+.. .+|||||+|.+.++|..||. |+|..| +|+.|.|.++
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l--~gr~V~Vt~a 77 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATI--VDQSVTITPA 77 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCee--CCceEEEEec
Confidence 46899999999999999999999999999999998863 57999999999999999995 999999 7999999998
Q ss_pred ecCC
Q 043164 527 KSIL 530 (1049)
Q Consensus 527 k~k~ 530 (1049)
....
T Consensus 78 ~~~~ 81 (260)
T PLN03120 78 EDYQ 81 (260)
T ss_pred cCCC
Confidence 7543
No 77
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.10 E-value=1.5e-10 Score=124.76 Aligned_cols=77 Identities=22% Similarity=0.415 Sum_probs=72.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEeec
Q 043164 286 SGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYS 365 (1049)
Q Consensus 286 s~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~A 365 (1049)
.++|+|.|||+..-+-||+.+|++||.|.+|.||.+ ..-||||+||.|++.+||++|-+.| ||..|.||+|.|+.|
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~L--Hgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAEL--HGTVVEGRKIEVNNA 171 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHh--hcceeeceEEEEecc
Confidence 479999999999999999999999999999999997 3458999999999999999999999 999999999999987
Q ss_pred C
Q 043164 366 S 366 (1049)
Q Consensus 366 ~ 366 (1049)
+
T Consensus 172 T 172 (376)
T KOG0125|consen 172 T 172 (376)
T ss_pred c
Confidence 4
No 78
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.10 E-value=1.9e-10 Score=109.28 Aligned_cols=85 Identities=27% Similarity=0.420 Sum_probs=79.5
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~ 525 (1049)
....|||.++.+.++|++|.+.|..||+|++|.|-.|.-||-.+|||+|+|.+.++|++||.+|||..|. |..|.|.|
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll--~q~v~VDw 148 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELL--GQNVSVDW 148 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhh--CCceeEEE
Confidence 3578999999999999999999999999999999999999999999999999999999999999999885 99999999
Q ss_pred eecCCCC
Q 043164 526 AKSILGP 532 (1049)
Q Consensus 526 Ak~k~~~ 532 (1049)
|..+..+
T Consensus 149 ~Fv~gp~ 155 (170)
T KOG0130|consen 149 CFVKGPE 155 (170)
T ss_pred EEecCCc
Confidence 9776443
No 79
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.10 E-value=2.3e-10 Score=113.70 Aligned_cols=78 Identities=27% Similarity=0.440 Sum_probs=72.0
Q ss_pred cceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEEe
Q 043164 447 THVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYA 526 (1049)
Q Consensus 447 s~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~A 526 (1049)
.++|||+||+..+++.+|..+|..||+|..|.|-+.+ -|||||+|.++.+|..|+..|+|..| +|..|+|.+.
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~--cG~r~rVE~S 82 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDI--CGSRIRVELS 82 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccc--cCceEEEEee
Confidence 3689999999999999999999999999999998864 58999999999999999999999999 7999999998
Q ss_pred ecCCC
Q 043164 527 KSILG 531 (1049)
Q Consensus 527 k~k~~ 531 (1049)
+....
T Consensus 83 ~G~~r 87 (195)
T KOG0107|consen 83 TGRPR 87 (195)
T ss_pred cCCcc
Confidence 77654
No 80
>smart00360 RRM RNA recognition motif.
Probab=99.08 E-value=4e-10 Score=96.52 Aligned_cols=71 Identities=32% Similarity=0.685 Sum_probs=67.1
Q ss_pred EcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEe
Q 043164 291 VKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFE 363 (1049)
Q Consensus 291 V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~ 363 (1049)
|+|||..+++++|+++|+.||.|..+.+..++.++.++|||||+|.+.++|..|+..| ++..+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~--~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEAL--NGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHc--CCCeeCCcEEEeC
Confidence 6899999999999999999999999999998888999999999999999999999999 8999999999873
No 81
>PLN03213 repressor of silencing 3; Provisional
Probab=99.08 E-value=2.8e-10 Score=127.34 Aligned_cols=77 Identities=29% Similarity=0.391 Sum_probs=71.6
Q ss_pred cceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCH--HHHHHHHHHhCCCeeccCCeEEEEE
Q 043164 447 THVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSV--EDASKALEATNGTTLEKNGQILRVA 524 (1049)
Q Consensus 447 s~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~--e~A~kAl~~LnG~~~~i~Gr~L~V~ 524 (1049)
+-+|||+||++.+++++|..+|+.||.|..|.|++. +| +|||||+|.+. .++.+||..|||..+ .|+.|+|.
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEW--KGR~LKVN 83 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVW--KGGRLRLE 83 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCee--cCceeEEe
Confidence 468999999999999999999999999999999954 66 99999999987 689999999999999 69999999
Q ss_pred EeecC
Q 043164 525 YAKSI 529 (1049)
Q Consensus 525 ~Ak~k 529 (1049)
-|++.
T Consensus 84 KAKP~ 88 (759)
T PLN03213 84 KAKEH 88 (759)
T ss_pred eccHH
Confidence 99986
No 82
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.06 E-value=2e-10 Score=119.36 Aligned_cols=79 Identities=27% Similarity=0.383 Sum_probs=70.6
Q ss_pred cceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEEe
Q 043164 447 THVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYA 526 (1049)
Q Consensus 447 s~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~A 526 (1049)
-++|||++|++.+..|.|+.+|++||.|+++.|+.|+.||.|+||+||+|.+.+.|++|++..| ++ |+||+..+..|
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~--pi-IdGR~aNcnlA 88 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN--PI-IDGRKANCNLA 88 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC--Cc-ccccccccchh
Confidence 4689999999999999999999999999999999999999999999999999999999987543 33 38998888776
Q ss_pred ec
Q 043164 527 KS 528 (1049)
Q Consensus 527 k~ 528 (1049)
.-
T Consensus 89 ~l 90 (247)
T KOG0149|consen 89 SL 90 (247)
T ss_pred hh
Confidence 44
No 83
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.06 E-value=5e-10 Score=102.09 Aligned_cols=77 Identities=26% Similarity=0.527 Sum_probs=71.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEe
Q 043164 284 APSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFE 363 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~ 363 (1049)
.-++.|||+|||+.+|.+++.++|.+||+|..|+|-..+ .-+|-|||.|++..+|.+||+.| +|..++++.|.|.
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhl--sg~n~~~ryl~vl 90 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHL--SGYNVDNRYLVVL 90 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHh--cccccCCceEEEE
Confidence 345789999999999999999999999999999997654 45899999999999999999999 9999999999999
Q ss_pred ec
Q 043164 364 YS 365 (1049)
Q Consensus 364 ~A 365 (1049)
|-
T Consensus 91 yy 92 (124)
T KOG0114|consen 91 YY 92 (124)
T ss_pred ec
Confidence 94
No 84
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.03 E-value=8.1e-09 Score=114.62 Aligned_cols=73 Identities=27% Similarity=0.418 Sum_probs=67.1
Q ss_pred cceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEEe
Q 043164 447 THVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYA 526 (1049)
Q Consensus 447 s~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~A 526 (1049)
.++|||+|||.+.|.+.|++-|..||.|..+.|+. .|+++| .|.|.++++|+.|+..|+|..| +|+.|+|.|.
T Consensus 536 a~qIiirNlP~dfTWqmlrDKfre~G~v~yadime---~GkskG--VVrF~s~edAEra~a~Mngs~l--~Gr~I~V~y~ 608 (608)
T KOG4212|consen 536 ACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME---NGKSKG--VVRFFSPEDAERACALMNGSRL--DGRNIKVTYF 608 (608)
T ss_pred ccEEEEecCCccccHHHHHHHHHhccceehhhhhc---cCCccc--eEEecCHHHHHHHHHHhccCcc--cCceeeeeeC
Confidence 46799999999999999999999999999999964 567777 8999999999999999999999 7999999873
No 85
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.03 E-value=8.1e-10 Score=116.95 Aligned_cols=75 Identities=23% Similarity=0.353 Sum_probs=69.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEee
Q 043164 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEY 364 (1049)
Q Consensus 285 ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~ 364 (1049)
.+.+|||+||++.+||++|++||+.||.|.+|.|+.|. ..+|||||+|.++++|..|| .| +|..|.+++|.|..
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lL--nGa~l~d~~I~It~ 77 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LL--SGATIVDQRVCITR 77 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hc--CCCeeCCceEEEEe
Confidence 35799999999999999999999999999999999984 45579999999999999999 67 99999999999987
Q ss_pred c
Q 043164 365 S 365 (1049)
Q Consensus 365 A 365 (1049)
.
T Consensus 78 ~ 78 (243)
T PLN03121 78 W 78 (243)
T ss_pred C
Confidence 5
No 86
>smart00362 RRM_2 RNA recognition motif.
Probab=99.03 E-value=1.3e-09 Score=93.66 Aligned_cols=71 Identities=48% Similarity=0.682 Sum_probs=66.2
Q ss_pred eEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEE
Q 043164 449 VLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRV 523 (1049)
Q Consensus 449 ~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V 523 (1049)
+|+|+|||..+++++|+++|.+||.|..+.+..++ +.++|+|||+|.+.++|..|+..|+|..| +|+.|.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~--~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKL--GGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEE--CCEEEee
Confidence 58999999999999999999999999999999876 67889999999999999999999999888 6888876
No 87
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=1.5e-10 Score=118.09 Aligned_cols=83 Identities=33% Similarity=0.472 Sum_probs=79.2
Q ss_pred cceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEEe
Q 043164 447 THVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYA 526 (1049)
Q Consensus 447 s~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~A 526 (1049)
.++|||++|...++|..|...|-+||.|+.|.|+.|-.+++.+||+||+|.-.++|..||..||+..|. |+.|+|.||
T Consensus 10 KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~--GrtirVN~A 87 (298)
T KOG0111|consen 10 KRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELF--GRTIRVNLA 87 (298)
T ss_pred ceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhc--ceeEEEeec
Confidence 579999999999999999999999999999999999999999999999999999999999999999994 999999999
Q ss_pred ecCCC
Q 043164 527 KSILG 531 (1049)
Q Consensus 527 k~k~~ 531 (1049)
+|...
T Consensus 88 kP~ki 92 (298)
T KOG0111|consen 88 KPEKI 92 (298)
T ss_pred CCccc
Confidence 98744
No 88
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=1.6e-10 Score=117.90 Aligned_cols=84 Identities=23% Similarity=0.406 Sum_probs=79.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEE
Q 043164 283 VAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFF 362 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V 362 (1049)
...-++||||+|...+||.-|...|-+||.|.+|+|+.|..+++.||||||+|.-.|+|..||..| |+..|.|++|+|
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNM--nesEL~GrtirV 84 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNM--NESELFGRTIRV 84 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcC--chhhhcceeEEE
Confidence 345589999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred eecCCC
Q 043164 363 EYSSKP 368 (1049)
Q Consensus 363 ~~A~~p 368 (1049)
++|.++
T Consensus 85 N~AkP~ 90 (298)
T KOG0111|consen 85 NLAKPE 90 (298)
T ss_pred eecCCc
Confidence 998543
No 89
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.00 E-value=5.5e-10 Score=129.35 Aligned_cols=78 Identities=28% Similarity=0.583 Sum_probs=76.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEeecC
Q 043164 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYSS 366 (1049)
Q Consensus 287 ~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~A~ 366 (1049)
+.|||||||+.++|++|..+|+..|+|.+++++.|+.||.++|||||+|.+.++|..|++.| ||..+.|++|+|.|+.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~l--Ng~~~~gr~l~v~~~~ 96 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNL--NGAEFNGRKLRVNYAS 96 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhc--CCcccCCceEEeeccc
Confidence 89999999999999999999999999999999999999999999999999999999999999 9999999999999973
No 90
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.00 E-value=2.2e-09 Score=92.87 Aligned_cols=74 Identities=31% Similarity=0.668 Sum_probs=68.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEee
Q 043164 288 TIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEY 364 (1049)
Q Consensus 288 ~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~ 364 (1049)
+|+|+|||..+++++|+++|+.+|.|..+.+..++.+ ..+|+|||+|.+.++|..|++.+ ++..+.|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~--~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEAL--NGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHh--CCCeECCeEEEEeC
Confidence 4899999999999999999999999999999988654 77899999999999999999999 99999999999864
No 91
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.00 E-value=1.4e-09 Score=99.26 Aligned_cols=77 Identities=27% Similarity=0.408 Sum_probs=70.9
Q ss_pred cceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEEe
Q 043164 447 THVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYA 526 (1049)
Q Consensus 447 s~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~A 526 (1049)
+..|||+|||+.+|.|++.++|.+||.|..|+|-..+ ..+|-|||.|.++.+|.+|+..|+|..+ .++.|.|-|-
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~--~~ryl~vlyy 92 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNV--DNRYLVVLYY 92 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhccccc--CCceEEEEec
Confidence 6789999999999999999999999999999998655 4689999999999999999999999999 6999999985
Q ss_pred ec
Q 043164 527 KS 528 (1049)
Q Consensus 527 k~ 528 (1049)
.+
T Consensus 93 q~ 94 (124)
T KOG0114|consen 93 QP 94 (124)
T ss_pred CH
Confidence 44
No 92
>smart00360 RRM RNA recognition motif.
Probab=98.99 E-value=1.4e-09 Score=93.12 Aligned_cols=71 Identities=54% Similarity=0.683 Sum_probs=66.2
Q ss_pred EeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEE
Q 043164 452 VRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVA 524 (1049)
Q Consensus 452 V~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~ 524 (1049)
|+|||..+++++|+++|++||.|..+.+..++.++.++|+|||+|.+.++|..|+..|++..| +|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~--~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKEL--DGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCee--CCcEEEeC
Confidence 579999999999999999999999999999887889999999999999999999999999888 68888873
No 93
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=98.99 E-value=1.5e-09 Score=117.23 Aligned_cols=79 Identities=25% Similarity=0.376 Sum_probs=72.9
Q ss_pred cceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEEe
Q 043164 447 THVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYA 526 (1049)
Q Consensus 447 s~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~A 526 (1049)
.++|+|.|||+..-+-||+.+|.+||.|.+|.||.+. .-|+||+||+|.++++|++|.+.|||..++ ||+|.|.-|
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VE--GRkIEVn~A 171 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVE--GRKIEVNNA 171 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceee--ceEEEEecc
Confidence 3789999999999999999999999999999999863 358999999999999999999999999995 999999988
Q ss_pred ecC
Q 043164 527 KSI 529 (1049)
Q Consensus 527 k~k 529 (1049)
...
T Consensus 172 Tar 174 (376)
T KOG0125|consen 172 TAR 174 (376)
T ss_pred chh
Confidence 654
No 94
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.99 E-value=8.9e-10 Score=115.05 Aligned_cols=80 Identities=33% Similarity=0.514 Sum_probs=76.9
Q ss_pred ceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEEee
Q 043164 448 HVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYAK 527 (1049)
Q Consensus 448 ~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~Ak 527 (1049)
..|+|-=||...|+|+|+.+|...|+|+.|+|++|+.+|++-||+||.|.++++|++|+..|||..| ..+.|+|+||.
T Consensus 42 TNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrL--Q~KTIKVSyAR 119 (360)
T KOG0145|consen 42 TNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRL--QNKTIKVSYAR 119 (360)
T ss_pred ceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceee--ccceEEEEecc
Confidence 4688888999999999999999999999999999999999999999999999999999999999999 79999999998
Q ss_pred cC
Q 043164 528 SI 529 (1049)
Q Consensus 528 ~k 529 (1049)
+.
T Consensus 120 PS 121 (360)
T KOG0145|consen 120 PS 121 (360)
T ss_pred CC
Confidence 86
No 95
>KOG0965 consensus Predicted RNA-binding protein, contains SWAP and G-patch domains [General function prediction only]
Probab=98.96 E-value=3.9e-10 Score=131.71 Aligned_cols=76 Identities=34% Similarity=0.598 Sum_probs=61.1
Q ss_pred cccccCCCCcHHHHHHHhcCCCCCCCCCCCCCCcccceeE-EEccCCccccccCCcCCCccccccchhHHHHHHHHHHH-
Q 043164 966 TADKAIDENNVGNRMLRSMGWHEGLGLGKDGSGMIEPVQA-QAMDSRAGLGSQQKKVDPSLEVQAGDSYKTLIHKKALA- 1043 (1049)
Q Consensus 966 ~~~~~i~~~n~g~~ml~~mGw~~G~gLG~~~~G~~~pi~~-~~~~~~~GlG~~~~~~~~~~~~~~~~~y~~~~~~~~~~- 1043 (1049)
.....|..+|||++||+||||+||+|||-.++||.+||.+ .+...+.|+|..... ..-...+.|..+-+++|++
T Consensus 898 yke~KLt~dNiGfQMLqKMGWKEGeGLGS~gkGI~dPVnkg~~~~~g~G~G~s~pa----el~peDdeYeayrKRMMLaY 973 (988)
T KOG0965|consen 898 YKEQKLTDDNIGFQMLQKMGWKEGEGLGSLGKGIRDPVNKGAAGSLGWGWGGSQPA----ELQPEDDEYEAYRKRMMLAY 973 (988)
T ss_pred HHHhhccccchHHHHHHHhCccccccccccCcccccchhhcccccCCcccccCCcc----ccCchhhHHHHHHHHHHHhh
Confidence 3456799999999999999999999999999999999985 477889999988642 2223456788777777777
Q ss_pred HH
Q 043164 1044 RF 1045 (1049)
Q Consensus 1044 R~ 1045 (1049)
||
T Consensus 974 rf 975 (988)
T KOG0965|consen 974 RF 975 (988)
T ss_pred hc
Confidence 44
No 96
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.95 E-value=7.4e-10 Score=110.84 Aligned_cols=79 Identities=33% Similarity=0.492 Sum_probs=75.3
Q ss_pred cceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEEe
Q 043164 447 THVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYA 526 (1049)
Q Consensus 447 s~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~A 526 (1049)
..+|||+||+..++++.|.++|-+.|+|++++|++|+.++..+|||||+|.+.++|+-|++.||...|+ |++|+|..+
T Consensus 9 d~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLY--grpIrv~ka 86 (203)
T KOG0131|consen 9 DATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLY--GRPIRVNKA 86 (203)
T ss_pred CceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhc--CceeEEEec
Confidence 469999999999999999999999999999999999999999999999999999999999999977774 999999987
Q ss_pred e
Q 043164 527 K 527 (1049)
Q Consensus 527 k 527 (1049)
.
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 6
No 97
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.94 E-value=6.3e-09 Score=122.87 Aligned_cols=75 Identities=25% Similarity=0.422 Sum_probs=70.3
Q ss_pred cceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEEe
Q 043164 447 THVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYA 526 (1049)
Q Consensus 447 s~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~A 526 (1049)
++||||+.|+..++|.+|..+|+.||.|..|.++. ++|+|||.+....+|.+||.+|+...| +++.|+|.||
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv--~~k~Iki~Wa 492 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKV--ADKTIKIAWA 492 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccc--cceeeEEeee
Confidence 56999999999999999999999999999999986 579999999999999999999998878 7999999999
Q ss_pred ecC
Q 043164 527 KSI 529 (1049)
Q Consensus 527 k~k 529 (1049)
-.+
T Consensus 493 ~g~ 495 (894)
T KOG0132|consen 493 VGK 495 (894)
T ss_pred ccC
Confidence 776
No 98
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.92 E-value=3.3e-09 Score=115.41 Aligned_cols=80 Identities=48% Similarity=0.633 Sum_probs=76.8
Q ss_pred cceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEEe
Q 043164 447 THVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYA 526 (1049)
Q Consensus 447 s~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~A 526 (1049)
..+|||+||+..+++++|.++|..||.|..|.|..++.++.++|||||+|.+.++|..|+..|+|..| .|+.|.|.++
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~--~~~~~~v~~~ 192 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKEL--EGRPLRVQKA 192 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeE--CCceeEeecc
Confidence 57999999999999999999999999999999999998999999999999999999999999999999 6999999997
Q ss_pred ec
Q 043164 527 KS 528 (1049)
Q Consensus 527 k~ 528 (1049)
..
T Consensus 193 ~~ 194 (306)
T COG0724 193 QP 194 (306)
T ss_pred cc
Confidence 64
No 99
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.92 E-value=3.9e-09 Score=111.86 Aligned_cols=76 Identities=18% Similarity=0.172 Sum_probs=68.4
Q ss_pred cceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEEe
Q 043164 447 THVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYA 526 (1049)
Q Consensus 447 s~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~A 526 (1049)
..+|||+||++.+|+++|+++|+.||.|.+|.|++|. ...|||||+|.++++|..|+ .|+|..| .++.|.|..+
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l--~d~~I~It~~ 78 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATI--VDQRVCITRW 78 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCee--CCceEEEEeC
Confidence 4689999999999999999999999999999999984 45589999999999999998 6999999 6899999865
Q ss_pred ec
Q 043164 527 KS 528 (1049)
Q Consensus 527 k~ 528 (1049)
..
T Consensus 79 ~~ 80 (243)
T PLN03121 79 GQ 80 (243)
T ss_pred cc
Confidence 43
No 100
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.92 E-value=7.5e-09 Score=89.42 Aligned_cols=74 Identities=50% Similarity=0.684 Sum_probs=68.2
Q ss_pred eEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEE
Q 043164 449 VLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525 (1049)
Q Consensus 449 ~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~ 525 (1049)
+|+|+|||..+++++|.++|..||.|..+.+..+..+ ...|+|||+|.+.++|..|+..+++..+ +|+.|.|.|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~--~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKEL--GGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeE--CCeEEEEeC
Confidence 4899999999999999999999999999999987654 6789999999999999999999999988 799998864
No 101
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.91 E-value=4.6e-09 Score=117.51 Aligned_cols=83 Identities=28% Similarity=0.383 Sum_probs=78.2
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~ 525 (1049)
-.+-|||+.||.++.|++|.-+|++.|.|-.++|+.|+.+|.++|||||.|.+.++|+.||..||+.+|. .|+.|.|+.
T Consensus 82 ~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir-~GK~igvc~ 160 (506)
T KOG0117|consen 82 RGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIR-PGKLLGVCV 160 (506)
T ss_pred CCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCcccc-CCCEeEEEE
Confidence 3578999999999999999999999999999999999999999999999999999999999999999997 899999988
Q ss_pred eecC
Q 043164 526 AKSI 529 (1049)
Q Consensus 526 Ak~k 529 (1049)
...+
T Consensus 161 Svan 164 (506)
T KOG0117|consen 161 SVAN 164 (506)
T ss_pred eeec
Confidence 6544
No 102
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.91 E-value=1.9e-07 Score=102.33 Aligned_cols=225 Identities=19% Similarity=0.201 Sum_probs=139.1
Q ss_pred CCCCCceEEEcCC--CCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeee--CC
Q 043164 282 AVAPSGTIVVKGL--SQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVV--DG 357 (1049)
Q Consensus 282 ~~~ps~~L~V~nL--p~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i--~G 357 (1049)
...++..|.+.=| -+.+|.+-|..+....|.|..|.|++. +|. .|.|||.+.+.|++|.+.| ||..| +-
T Consensus 116 s~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ngV---QAmVEFdsv~~AqrAk~al--NGADIYsGC 188 (494)
T KOG1456|consen 116 SATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NGV---QAMVEFDSVEVAQRAKAAL--NGADIYSGC 188 (494)
T ss_pred CCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cce---eeEEeechhHHHHHHHhhc--ccccccccc
Confidence 3455566665544 456899999999999999999998874 554 7999999999999999999 88776 45
Q ss_pred eeEEEeecCCCCCCCCCCCCcccc------------------ccccccCCCCCCCCccccccccccccccccccccccCC
Q 043164 358 RKLFFEYSSKPTGGSGGHYGQESA------------------MGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEA 419 (1049)
Q Consensus 358 r~i~V~~A~~p~~~~~~~~~~~~~------------------~~~~~~~~r~~~p~dw~~~~~~~~n~~~r~~~~~~~~~ 419 (1049)
.+|+|+||. |+.-.......+.. .++.+..-...-|..|-....+...- .....+
T Consensus 189 CTLKIeyAk-P~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg------~~~~p~ 261 (494)
T KOG1456|consen 189 CTLKIEYAK-PTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSG------DRHGPP 261 (494)
T ss_pred eeEEEEecC-cceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCccc------ccCCCC
Confidence 899999983 22111000000000 00000000000011111100000000 000000
Q ss_pred CCCCCCcccCCCCCCCCCCCCCCCCCCcceEEEeCCCcc-CcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCC
Q 043164 420 RTDDAPPAEMNSSNPIPLGKKGSDTGPTHVLVVRGLDEY-ADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHS 498 (1049)
Q Consensus 420 ~~~~~~~~~~~~s~~~~~~~~~~~~~ps~~LfV~NLp~~-~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s 498 (1049)
-.......+.. -.+ ..........+..+++|-+|... ++-+.|..+|..||.|..|++++.+ -|-|.|++.+
T Consensus 262 ~~~P~r~~~~~-~~~-~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd 334 (494)
T KOG1456|consen 262 HPPPSRYRDGY-RDG-RGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGD 334 (494)
T ss_pred CCCCCCCcccc-ccC-CCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCc
Confidence 00000000000 000 00001122345789999999865 7889999999999999999999875 3799999999
Q ss_pred HHHHHHHHHHhCCCeeccCCeEEEEEEeecC
Q 043164 499 VEDASKALEATNGTTLEKNGQILRVAYAKSI 529 (1049)
Q Consensus 499 ~e~A~kAl~~LnG~~~~i~Gr~L~V~~Ak~k 529 (1049)
..+.++|+..||+..+. |.+|.|++++..
T Consensus 335 ~~aver~v~hLnn~~lf--G~kl~v~~SkQ~ 363 (494)
T KOG1456|consen 335 AYAVERAVTHLNNIPLF--GGKLNVCVSKQN 363 (494)
T ss_pred HHHHHHHHHHhccCccc--cceEEEeecccc
Confidence 99999999999998885 889999997765
No 103
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.88 E-value=3.1e-09 Score=123.19 Aligned_cols=80 Identities=35% Similarity=0.501 Sum_probs=77.5
Q ss_pred ceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEEee
Q 043164 448 HVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYAK 527 (1049)
Q Consensus 448 ~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~Ak 527 (1049)
.+|||+|||+.+++++|..+|+..|.|..++++-|+.||..+|||||+|.+.++|..|+..|||..| +|++|+|.|+.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~--~gr~l~v~~~~ 96 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEF--NGRKLRVNYAS 96 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCccc--CCceEEeeccc
Confidence 6899999999999999999999999999999999999999999999999999999999999999999 79999999976
Q ss_pred cC
Q 043164 528 SI 529 (1049)
Q Consensus 528 ~k 529 (1049)
..
T Consensus 97 ~~ 98 (435)
T KOG0108|consen 97 NR 98 (435)
T ss_pred cc
Confidence 64
No 104
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.86 E-value=1e-08 Score=85.81 Aligned_cols=56 Identities=50% Similarity=0.816 Sum_probs=50.9
Q ss_pred HHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEEe
Q 043164 464 LRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYA 526 (1049)
Q Consensus 464 Lre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~A 526 (1049)
|.++|++||.|..|.+.... .|+|||+|.+.++|..|+..|||..| +|+.|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~--~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQF--NGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEE--TTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEE--CCcEEEEEEC
Confidence 67899999999999998753 58999999999999999999999999 7999999996
No 105
>smart00361 RRM_1 RNA recognition motif.
Probab=98.85 E-value=8.8e-09 Score=90.48 Aligned_cols=61 Identities=25% Similarity=0.471 Sum_probs=54.3
Q ss_pred HHHHHHHhh----ccCCeeeEE-EeecCCC--CceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEE
Q 043164 461 EEMLRYEFS----KHAPIKDLR-LVRDKFT--HVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRV 523 (1049)
Q Consensus 461 eedLre~Fs----~fG~I~~v~-I~rD~~t--g~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V 523 (1049)
+++|+++|+ +||.|..|. |+.++.+ +.++|||||+|.+.++|.+|+..|||..| +|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~--~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYF--DGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEE--CCEEEEe
Confidence 567788887 999999995 7777666 88999999999999999999999999999 7999986
No 106
>smart00361 RRM_1 RNA recognition motif.
Probab=98.83 E-value=9.9e-09 Score=90.15 Aligned_cols=61 Identities=20% Similarity=0.363 Sum_probs=55.8
Q ss_pred HHHHHHHHh----hcCCeeEEE-EeecCCC--CCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEE
Q 043164 300 EEDLYQILA----EWGPLRHVR-VIKERNS--GVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFF 362 (1049)
Q Consensus 300 ee~L~~~F~----~~G~i~~v~-i~~dk~t--g~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V 362 (1049)
+++|+++|. .||.|..|. |+.++.+ +.++|||||+|.+.++|.+||..| ||..|.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l--~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDL--NGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHh--CCCEECCEEEEe
Confidence 578999998 999999995 7777666 999999999999999999999999 999999999986
No 107
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.81 E-value=8.8e-09 Score=112.83 Aligned_cols=192 Identities=16% Similarity=0.110 Sum_probs=126.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcC----CeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEE
Q 043164 287 GTIVVKGLSQKTTEEDLYQILAEWG----PLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFF 362 (1049)
Q Consensus 287 ~~L~V~nLp~~~tee~L~~~F~~~G----~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V 362 (1049)
-.|-+++||+++|+.++.+||.+-- -+..|.+++. ..|+..|-|||.|..+++|+.||.. |...|+-|-|.+
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL~k---hrq~iGqRYIEl 237 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFACEEDAQFALRK---HRQNIGQRYIEL 237 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecCHHHHHHHHHH---HHHHHhHHHHHH
Confidence 4677899999999999999997543 3456666664 4789999999999999999999977 566676666665
Q ss_pred eecCCCCCCCCCCCCccccccccccCCCCCCCCccccccccccccccccccccccCCCCCCCCcccCCCCCCCCCCCCCC
Q 043164 363 EYSSKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKGS 442 (1049)
Q Consensus 363 ~~A~~p~~~~~~~~~~~~~~~~~~~~~r~~~p~dw~~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 442 (1049)
-.++... ..+.. ++ +......... ..+.. +........
T Consensus 238 FRSTaaE-----------vqqvl-------------------nr---------~~s~pLi~~~--~sp~~-p~~p~~~~p 275 (508)
T KOG1365|consen 238 FRSTAAE-----------VQQVL-------------------NR---------EVSEPLIPGL--TSPLL-PGGPARLVP 275 (508)
T ss_pred HHHhHHH-----------HHHHH-------------------Hh---------hccccccCCC--CCCCC-CCCccccCC
Confidence 4432100 00000 00 0000000000 00000 000000111
Q ss_pred CCCCcceEEEeCCCccCcHHHHHHHhhccCC-eee--EEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCe
Q 043164 443 DTGPTHVLVVRGLDEYADEEMLRYEFSKHAP-IKD--LRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQ 519 (1049)
Q Consensus 443 ~~~ps~~LfV~NLp~~~teedLre~Fs~fG~-I~~--v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr 519 (1049)
......||-+++||+..+.|+|..+|..|.. |.. |+++.+. .|...|-|||+|.+.+.|..|+...+.... ..+
T Consensus 276 ~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~m--k~R 352 (508)
T KOG1365|consen 276 PTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG-QGRPSGEAFIQMRNAERARAAAQKCHKKLM--KSR 352 (508)
T ss_pred CCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhhc--ccc
Confidence 2223679999999999999999999999975 333 6666654 577899999999999999999998887655 477
Q ss_pred EEEEEEee
Q 043164 520 ILRVAYAK 527 (1049)
Q Consensus 520 ~L~V~~Ak 527 (1049)
-|.|.-+.
T Consensus 353 YiEvfp~S 360 (508)
T KOG1365|consen 353 YIEVFPCS 360 (508)
T ss_pred eEEEeecc
Confidence 78877643
No 108
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.80 E-value=1.6e-08 Score=84.65 Aligned_cols=56 Identities=32% Similarity=0.820 Sum_probs=51.0
Q ss_pred HHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEeec
Q 043164 303 LYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYS 365 (1049)
Q Consensus 303 L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~A 365 (1049)
|.++|++||.|..|.+...+ +++|||+|.+.++|..|++.| ||..|.|++|.|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l--~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQL--NGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHH--TTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHh--CCCEECCcEEEEEEC
Confidence 68899999999999998764 579999999999999999999 999999999999985
No 109
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.78 E-value=1.7e-07 Score=106.74 Aligned_cols=222 Identities=21% Similarity=0.239 Sum_probs=126.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeE-EEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEE
Q 043164 284 APSGTIVVKGLSQKTTEEDLYQILAEWGPLRH-VRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFF 362 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~-v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V 362 (1049)
.+...|-+++||+.||+++|.+||+..-.|.. |.|+.++ .+++.|-|||+|.+.+.|++||.. +...|.-+-|.|
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~r---hre~iGhRYIEv 176 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGR---HRENIGHRYIEV 176 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHH---HHHhhccceEEe
Confidence 45678999999999999999999998877755 6677774 678999999999999999999977 778898898988
Q ss_pred eecCC--------CCCC-CC--CCCCccccccccccCCCCCCCCccccc---------cccccccccccccccccCCCCC
Q 043164 363 EYSSK--------PTGG-SG--GHYGQESAMGARHSNHKSTIPCDWMCT---------ICGCVNFARRTSCFQCNEARTD 422 (1049)
Q Consensus 363 ~~A~~--------p~~~-~~--~~~~~~~~~~~~~~~~r~~~p~dw~~~---------~~~~~n~~~r~~~~~~~~~~~~ 422 (1049)
-.|.. +... .. +|.......+... .-......|... ..+..++...........-...
T Consensus 177 F~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~--d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~ 254 (510)
T KOG4211|consen 177 FRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGY--DYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGG 254 (510)
T ss_pred ehhHHHHHHhhccccccccCCCCccccccCCcccc--ccccccCCCccccccccccCCccccccCccccccccccccccc
Confidence 76521 0000 00 0100000000000 000000111100 0000000000000000000000
Q ss_pred CCCcccCC--CCCCCCCCCCCCCCCCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHH
Q 043164 423 DAPPAEMN--SSNPIPLGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVE 500 (1049)
Q Consensus 423 ~~~~~~~~--~s~~~~~~~~~~~~~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e 500 (1049)
........ .......+.......-.+++..++||...++.+|..+|+..-++ .|.|.... +|...|-|+|+|.+.+
T Consensus 255 ~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~-dGr~TGEAdveF~t~e 332 (510)
T KOG4211|consen 255 RDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGP-DGRATGEADVEFATGE 332 (510)
T ss_pred cccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCC-CCccCCcceeecccch
Confidence 00000000 00000001111111123789999999999999999999988776 45554443 6888999999999999
Q ss_pred HHHHHHHHhCCCee
Q 043164 501 DASKALEATNGTTL 514 (1049)
Q Consensus 501 ~A~kAl~~LnG~~~ 514 (1049)
+|..||.. ++..+
T Consensus 333 dav~Amsk-d~anm 345 (510)
T KOG4211|consen 333 DAVGAMGK-DGANM 345 (510)
T ss_pred hhHhhhcc-CCccc
Confidence 99999864 44444
No 110
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.78 E-value=8.1e-09 Score=103.26 Aligned_cols=79 Identities=24% Similarity=0.339 Sum_probs=70.8
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~ 525 (1049)
.+.+|||+|||.++-+.+|.++|.+||.|..|.|.... ..-+||||+|+++.+|+.||..-+|..+ +|..|+|.|
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdy--dg~rLRVEf 79 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDY--DGCRLRVEF 79 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhccccccc--CcceEEEEe
Confidence 35789999999999999999999999999999886532 2457999999999999999999999999 899999999
Q ss_pred eecC
Q 043164 526 AKSI 529 (1049)
Q Consensus 526 Ak~k 529 (1049)
+..-
T Consensus 80 prgg 83 (241)
T KOG0105|consen 80 PRGG 83 (241)
T ss_pred ccCC
Confidence 8764
No 111
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.76 E-value=1.6e-08 Score=105.35 Aligned_cols=80 Identities=35% Similarity=0.483 Sum_probs=73.6
Q ss_pred CcceEEEeCCCccCcHHHHHH----HhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRY----EFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQIL 521 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre----~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L 521 (1049)
|..+|||.||...+..++|+. +|++||.|..|...+ |.+.+|-|||.|.+++.|..|+.+|+|+.|+ |+.+
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFy--gK~m 82 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFY--GKPM 82 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCccc--Cchh
Confidence 556999999999999999877 999999999998876 5679999999999999999999999999996 9999
Q ss_pred EEEEeecCC
Q 043164 522 RVAYAKSIL 530 (1049)
Q Consensus 522 ~V~~Ak~k~ 530 (1049)
+|.||+.+.
T Consensus 83 riqyA~s~s 91 (221)
T KOG4206|consen 83 RIQYAKSDS 91 (221)
T ss_pred heecccCcc
Confidence 999999873
No 112
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=9.4e-08 Score=109.47 Aligned_cols=170 Identities=18% Similarity=0.256 Sum_probs=116.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCC--CCCccc---eEEEEcCCHHHHHHHHHHhcCCCeeeCCe
Q 043164 284 APSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERN--SGVSRG---FAFIDFPSVGAARAMMDRIGDDGLVVDGR 358 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~--tg~srG---~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr 358 (1049)
.-+++||||+||..++|+.|...|..||.|.-=.-.+... --.++| |+|+.|+++..+..-|.++ .....
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC-----~~~~~ 331 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC-----SEGEG 331 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH-----hhccc
Confidence 3467999999999999999999999999873211111111 123566 9999999999998888776 12333
Q ss_pred eEEEeecCCCCCCCCCCCCccccccccccCCCCCCCCccccccccccccccccccccccCCCCCCCCcccCCCCCCCCCC
Q 043164 359 KLFFEYSSKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLG 438 (1049)
Q Consensus 359 ~i~V~~A~~p~~~~~~~~~~~~~~~~~~~~~r~~~p~dw~~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 438 (1049)
.+.+..+. |+... +.-..-.|.-.. .+| .-
T Consensus 332 ~~yf~vss-~~~k~-----------------k~VQIrPW~laD---s~f-----------------------------v~ 361 (520)
T KOG0129|consen 332 NYYFKVSS-PTIKD-----------------KEVQIRPWVLAD---SDF-----------------------------VL 361 (520)
T ss_pred ceEEEEec-Ccccc-----------------cceeEEeeEecc---chh-----------------------------hh
Confidence 33333321 11100 000001122110 000 00
Q ss_pred CCCCCCCCcceEEEeCCCccCcHHHHHHHhh-ccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHH
Q 043164 439 KKGSDTGPTHVLVVRGLDEYADEEMLRYEFS-KHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEA 508 (1049)
Q Consensus 439 ~~~~~~~ps~~LfV~NLp~~~teedLre~Fs-~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~ 508 (1049)
.......|..||||++||-.++.++|..+|+ -||.|..+-|-.|+.-+-.+|-|=|+|.+...-.+||.+
T Consensus 362 d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 362 DHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred ccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 1112234788999999999999999999999 799999999999988888999999999999999999875
No 113
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.71 E-value=1e-08 Score=123.10 Aligned_cols=163 Identities=19% Similarity=0.283 Sum_probs=133.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEe
Q 043164 284 APSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFE 363 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~ 363 (1049)
..+.+||++||+..+++.+|+.+|..+|.|..|.|-.-+ -+.---||||.|.+...+-.|+..+ .+..|..-.+++.
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~--s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEE--SGPLIGNGTHRIG 446 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhh--cCCccccCccccc
Confidence 446799999999999999999999999999988886643 2333449999999999999999887 6665554444443
Q ss_pred ecCCCCCCCCCCCCccccccccccCCCCCCCCccccccccccccccccccccccCCCCCCCCcccCCCCCCCCCCCCCCC
Q 043164 364 YSSKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKGSD 443 (1049)
Q Consensus 364 ~A~~p~~~~~~~~~~~~~~~~~~~~~r~~~p~dw~~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 443 (1049)
+.. ..
T Consensus 447 lG~---------------------------------------------------------------------------~k 451 (975)
T KOG0112|consen 447 LGQ---------------------------------------------------------------------------PK 451 (975)
T ss_pred ccc---------------------------------------------------------------------------cc
Confidence 310 01
Q ss_pred CCCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEE
Q 043164 444 TGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRV 523 (1049)
Q Consensus 444 ~~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V 523 (1049)
..+++.|+|++|...+....|..+|..||+|..|.+-... -||+|.|.++..|+.|+..|-|..|....+.|+|
T Consensus 452 st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq------~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rv 525 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQ------PYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRV 525 (975)
T ss_pred cccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCC------cceeeecccCccchhhHHHHhcCcCCCCCccccc
Confidence 1256789999999999999999999999999998886542 4999999999999999999999999666688999
Q ss_pred EEeecCC
Q 043164 524 AYAKSIL 530 (1049)
Q Consensus 524 ~~Ak~k~ 530 (1049)
.||....
T Consensus 526 dla~~~~ 532 (975)
T KOG0112|consen 526 DLASPPG 532 (975)
T ss_pred ccccCCC
Confidence 9998864
No 114
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.71 E-value=1.9e-08 Score=107.24 Aligned_cols=72 Identities=26% Similarity=0.394 Sum_probs=69.0
Q ss_pred eEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEEeec
Q 043164 449 VLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYAKS 528 (1049)
Q Consensus 449 ~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~Ak~ 528 (1049)
+|||+|||..+++.+|+.+|++||.|.+|.|+++ |+||+.++...|..||..|||..| +|..|.|.-+|+
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtL--hg~nInVeaSks 73 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTL--HGVNINVEASKS 73 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhccccee--cceEEEEEeccc
Confidence 7999999999999999999999999999999986 999999999999999999999999 899999999988
Q ss_pred CC
Q 043164 529 IL 530 (1049)
Q Consensus 529 k~ 530 (1049)
+.
T Consensus 74 Ks 75 (346)
T KOG0109|consen 74 KS 75 (346)
T ss_pred cC
Confidence 83
No 115
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.70 E-value=4.1e-09 Score=108.06 Aligned_cols=144 Identities=24% Similarity=0.365 Sum_probs=118.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEe
Q 043164 284 APSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFE 363 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~ 363 (1049)
...+||||+||...++|+-|.++|-..|+|..|.|..++ .+..+ ||||+|.++-.+.-|++.| ||+.+.+..|+|.
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~--ng~~l~~~e~q~~ 82 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLE--NGDDLEEDEEQRT 82 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhc--ccchhccchhhcc
Confidence 345799999999999999999999999999999999886 46666 9999999999999999999 9999999999886
Q ss_pred ecCCCCCCCCCCCCccccccccccCCCCCCCCccccccccccccccccccccccCCCCCCCCcccCCCCCCCCCCCCCCC
Q 043164 364 YSSKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKGSD 443 (1049)
Q Consensus 364 ~A~~p~~~~~~~~~~~~~~~~~~~~~r~~~p~dw~~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 443 (1049)
+- ||...
T Consensus 83 ~r------------------------------------~G~sh------------------------------------- 89 (267)
T KOG4454|consen 83 LR------------------------------------CGNSH------------------------------------- 89 (267)
T ss_pred cc------------------------------------cCCCc-------------------------------------
Confidence 51 00000
Q ss_pred CCCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCee
Q 043164 444 TGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTL 514 (1049)
Q Consensus 444 ~~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~ 514 (1049)
. -|...++++.+...|+.-|+|..+++..+.. |.++.+.||.+.-....-.++....+..+
T Consensus 90 ----a-----pld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~~~~y~~l~~ 150 (267)
T KOG4454|consen 90 ----A-----PLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFALDLYQGLEL 150 (267)
T ss_pred ----c-----hhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCcHHhhhhcccCc
Confidence 0 1333467777888899999999999998864 77889999999888877788887777655
No 116
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=2.2e-08 Score=108.74 Aligned_cols=83 Identities=25% Similarity=0.397 Sum_probs=78.2
Q ss_pred CCCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEE
Q 043164 444 TGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRV 523 (1049)
Q Consensus 444 ~~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V 523 (1049)
..|.++|||--|.+.++.++|.-+|+.||.|..|.|++|..||.+-.||||+|.+.+.+++|.-.|++..| +.+.|+|
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLI--DDrRIHV 313 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLI--DDRRIHV 313 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceee--ccceEEe
Confidence 45789999999999999999999999999999999999999999999999999999999999999999877 8999999
Q ss_pred EEeec
Q 043164 524 AYAKS 528 (1049)
Q Consensus 524 ~~Ak~ 528 (1049)
.|+.+
T Consensus 314 DFSQS 318 (479)
T KOG0415|consen 314 DFSQS 318 (479)
T ss_pred ehhhh
Confidence 99544
No 117
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.67 E-value=3.4e-08 Score=101.20 Aligned_cols=80 Identities=18% Similarity=0.390 Sum_probs=75.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhc-CCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEE
Q 043164 284 APSGTIVVKGLSQKTTEEDLYQILAEW-GPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFF 362 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~~~F~~~-G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V 362 (1049)
....-+||..||..+.+.+|..+|.+| |.|..+++.+++.||.|+|||||+|.+++.|..|-+.| |+..|.++.|.|
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETM--NNYLl~e~lL~c 124 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETM--NNYLLMEHLLEC 124 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHh--hhhhhhhheeee
Confidence 445679999999999999999999988 78899999999999999999999999999999999999 999999999999
Q ss_pred eec
Q 043164 363 EYS 365 (1049)
Q Consensus 363 ~~A 365 (1049)
.+-
T Consensus 125 ~vm 127 (214)
T KOG4208|consen 125 HVM 127 (214)
T ss_pred EEe
Confidence 994
No 118
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=3.6e-08 Score=107.19 Aligned_cols=84 Identities=27% Similarity=0.517 Sum_probs=79.8
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeE
Q 043164 281 YAVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKL 360 (1049)
Q Consensus 281 ~~~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i 360 (1049)
...+|.+.|||..|.+-+|.++|.-+|+.||+|..|.||+|..||.+..||||+|.+.+++.+|.-.| +.+.|+.+.|
T Consensus 234 d~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKM--dNvLIDDrRI 311 (479)
T KOG0415|consen 234 DVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKM--DNVLIDDRRI 311 (479)
T ss_pred ccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhh--cceeeccceE
Confidence 34577899999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred EEeecC
Q 043164 361 FFEYSS 366 (1049)
Q Consensus 361 ~V~~A~ 366 (1049)
.|.|++
T Consensus 312 HVDFSQ 317 (479)
T KOG0415|consen 312 HVDFSQ 317 (479)
T ss_pred Eeehhh
Confidence 999974
No 119
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.57 E-value=6.1e-08 Score=101.90 Aligned_cols=81 Identities=19% Similarity=0.395 Sum_probs=77.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEE
Q 043164 282 AVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLF 361 (1049)
Q Consensus 282 ~~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~ 361 (1049)
..+.++.|||-.||...+..+|...|-+||.|++.++..|+.|+.+|.|+||.|.++..|+.||.+| ||+.|+=+.|+
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAM--NGFQIGMKRLK 358 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM--NGFQIGMKRLK 358 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHh--cchhhhhhhhh
Confidence 3456799999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred Eee
Q 043164 362 FEY 364 (1049)
Q Consensus 362 V~~ 364 (1049)
|..
T Consensus 359 VQL 361 (371)
T KOG0146|consen 359 VQL 361 (371)
T ss_pred hhh
Confidence 987
No 120
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.51 E-value=1e-07 Score=106.02 Aligned_cols=179 Identities=22% Similarity=0.231 Sum_probs=137.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEee
Q 043164 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEY 364 (1049)
Q Consensus 285 ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~ 364 (1049)
...++||+++...+.+.++..+|..+|.+..+.+........++|++.|.|...+.+..||... ....+.++.+....
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s--~~~~~~~~~~~~dl 164 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEES--GSKVLDGNKGEKDL 164 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhh--hccccccccccCcc
Confidence 4578999999999999999999999999888888887778899999999999999999999764 22344444444322
Q ss_pred cCCCCCCCCCCCCccccccccccCCCCCCCCccccccccccccccccccccccCCCCCCCCcccCCCCCCCCCCCCCCCC
Q 043164 365 SSKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKGSDT 444 (1049)
Q Consensus 365 A~~p~~~~~~~~~~~~~~~~~~~~~r~~~p~dw~~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 444 (1049)
.+.- . ..+|+ +. .....
T Consensus 165 ~~~~----------------------~----~~~~n------~~-------------------------------~~~~~ 181 (285)
T KOG4210|consen 165 NTRR----------------------G----LRPKN------KL-------------------------------SRLSS 181 (285)
T ss_pred cccc----------------------c----ccccc------hh-------------------------------ccccc
Confidence 1000 0 00000 00 00001
Q ss_pred CCcceEE-EeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEE
Q 043164 445 GPTHVLV-VRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRV 523 (1049)
Q Consensus 445 ~ps~~Lf-V~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V 523 (1049)
.+..+++ |+||+..+++++|..+|..+|.|..++++.+..++.+.|||||.|.....+..++.. +...+ +++.+.+
T Consensus 182 ~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~ 258 (285)
T KOG4210|consen 182 GPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSI--GGRPLRL 258 (285)
T ss_pred CccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcc--cCccccc
Confidence 1233444 999999999999999999999999999999999999999999999999999998887 66666 6999999
Q ss_pred EEeecCCC
Q 043164 524 AYAKSILG 531 (1049)
Q Consensus 524 ~~Ak~k~~ 531 (1049)
.+..+...
T Consensus 259 ~~~~~~~~ 266 (285)
T KOG4210|consen 259 EEDEPRPK 266 (285)
T ss_pred ccCCCCcc
Confidence 99877643
No 121
>KOG2809 consensus Telomerase elongation inhibitor/RNA maturation protein PINX1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=98.50 E-value=1.2e-07 Score=104.45 Aligned_cols=53 Identities=32% Similarity=0.745 Sum_probs=49.3
Q ss_pred cccCCCCcHHHHHHHhcCCCCCCCCCCCCCCcccceeEEEccCCccccccCCc
Q 043164 968 DKAIDENNVGNRMLRSMGWHEGLGLGKDGSGMIEPVQAQAMDSRAGLGSQQKK 1020 (1049)
Q Consensus 968 ~~~i~~~n~g~~ml~~mGw~~G~gLG~~~~G~~~pi~~~~~~~~~GlG~~~~~ 1020 (1049)
...++.+-+|++||.+|||++|.|||++.||++.||.+.++.+..|||+....
T Consensus 20 ~w~nd~~~fg~KlLekmGW~eG~GLG~~~qG~~~~IKvs~K~d~~GLGa~~~n 72 (326)
T KOG2809|consen 20 AWSNDDSRFGKKLLEKMGWSEGDGLGKNEQGITDPIKVSLKNDTLGLGADKNN 72 (326)
T ss_pred hhcccchHHHHHHHHHcCCccCCcccccccCCccceEEEeccCCcccCccccc
Confidence 45578999999999999999999999999999999999999999999998753
No 122
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.49 E-value=2.8e-07 Score=94.67 Aligned_cols=82 Identities=27% Similarity=0.267 Sum_probs=74.3
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhcc-CCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKH-APIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVA 524 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~f-G~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~ 524 (1049)
....++|..||..+.+..|..+|.+| |.|..+++-+++.||.|+|||||+|.+.+.|..|.+.||+..| .++.|.|.
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl--~e~lL~c~ 125 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLL--MEHLLECH 125 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhh--hhheeeeE
Confidence 34579999999999999999999999 6788888889999999999999999999999999999999988 59999999
Q ss_pred EeecC
Q 043164 525 YAKSI 529 (1049)
Q Consensus 525 ~Ak~k 529 (1049)
|-.+.
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 85553
No 123
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.43 E-value=2e-07 Score=97.97 Aligned_cols=167 Identities=16% Similarity=0.254 Sum_probs=124.6
Q ss_pred ceEEEcCCCCCCCHHH-H--HHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEe
Q 043164 287 GTIVVKGLSQKTTEED-L--YQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFE 363 (1049)
Q Consensus 287 ~~L~V~nLp~~~tee~-L--~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~ 363 (1049)
..++++++-..+..+- | ...|+.+-.+....++.+. .+.-++++|+.|.....-.++-..- ++..|.-..|++.
T Consensus 97 f~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~--~~Kki~~~~VR~a 173 (290)
T KOG0226|consen 97 FRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEK--EKKKIGKPPVRLA 173 (290)
T ss_pred ccccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhcccc--ccccccCcceeec
Confidence 3567777766665555 3 6778877777777777774 5777889999999877766665443 5555555554432
Q ss_pred ecCCCCCCCCCCCCccccccccccCCCCCCCCccccccccccccccccccccccCCCCCCCCcccCCCCCCCCCCCCCCC
Q 043164 364 YSSKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKGSD 443 (1049)
Q Consensus 364 ~A~~p~~~~~~~~~~~~~~~~~~~~~r~~~p~dw~~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 443 (1049)
-. ..|..+. ..+-.
T Consensus 174 ~g-----------------------------tswedPs-------------------l~ew~------------------ 187 (290)
T KOG0226|consen 174 AG-----------------------------TSWEDPS-------------------LAEWD------------------ 187 (290)
T ss_pred cc-----------------------------cccCCcc-------------------cccCc------------------
Confidence 21 2222110 00000
Q ss_pred CCCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEE
Q 043164 444 TGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRV 523 (1049)
Q Consensus 444 ~~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V 523 (1049)
...-+||.+.|...++.+.|...|.+|-.....++++|+-||+++||+||-|.++.++..|+..|+|..+ +.+.|++
T Consensus 188 -~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyV--gsrpikl 264 (290)
T KOG0226|consen 188 -EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYV--GSRPIKL 264 (290)
T ss_pred -cccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhccccc--ccchhHh
Confidence 0124899999999999999999999999999999999999999999999999999999999999999998 7888877
Q ss_pred EE
Q 043164 524 AY 525 (1049)
Q Consensus 524 ~~ 525 (1049)
.-
T Consensus 265 Rk 266 (290)
T KOG0226|consen 265 RK 266 (290)
T ss_pred hh
Confidence 54
No 124
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.41 E-value=1e-06 Score=96.60 Aligned_cols=77 Identities=27% Similarity=0.445 Sum_probs=68.8
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~ 525 (1049)
...+|||++|-..++|.+|+++|.+||.|..|.++.. +|+|||+|.+.+.|+.|...+-. .+.|+|..|+|.|
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n-~lvI~G~Rl~i~W 299 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFN-KLVINGFRLKIKW 299 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcc-eeeecceEEEEEe
Confidence 4579999999999999999999999999999999864 46999999999999999988766 4556999999999
Q ss_pred eecC
Q 043164 526 AKSI 529 (1049)
Q Consensus 526 Ak~k 529 (1049)
+.++
T Consensus 300 g~~~ 303 (377)
T KOG0153|consen 300 GRPK 303 (377)
T ss_pred CCCc
Confidence 8883
No 125
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.40 E-value=5.6e-07 Score=99.46 Aligned_cols=139 Identities=23% Similarity=0.456 Sum_probs=106.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCee--------EEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeee
Q 043164 284 APSGTIVVKGLSQKTTEEDLYQILAEWGPLR--------HVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVV 355 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~--------~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i 355 (1049)
....+|||-+||..+++.+|.++|.++|.|. .|.|.+|+.|+..||-|.|.|.+...|+.|+..+ ++..+
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~--agkdf 141 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWF--AGKDF 141 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhh--ccccc
Confidence 3456899999999999999999999998873 4889999999999999999999999999999999 99999
Q ss_pred CCeeEEEeecCCCCCCC------------C----------CCCCcccccc-------cc-------ccCCCCCCCCcccc
Q 043164 356 DGRKLFFEYSSKPTGGS------------G----------GHYGQESAMG-------AR-------HSNHKSTIPCDWMC 399 (1049)
Q Consensus 356 ~Gr~i~V~~A~~p~~~~------------~----------~~~~~~~~~~-------~~-------~~~~r~~~p~dw~~ 399 (1049)
.|.+|+|..|...+... . .+.+.-.... .. .....+....||.|
T Consensus 142 ~gn~ikvs~a~~r~~ve~~rg~~~~~~g~g~fg~~~~grg~~~G~gg~~~~~~~~~rGg~~~~g~~g~~~~~~~d~Dw~c 221 (351)
T KOG1995|consen 142 CGNTIKVSLAERRTGVESVRGGYPNDGGAGEFGRLRGGRGGPGGPGGGDGEAGKGDRGGVPDGGESGGGNVQDEDGDWDC 221 (351)
T ss_pred cCCCchhhhhhhccCcccccccccCcCCCCCccccccCCCCCCCCCCccccccccccCCcCCCcccCCcccccccccccc
Confidence 99999998874322110 0 0000000000 00 00112345678999
Q ss_pred c-cccccccccccccccccCCCCCCC
Q 043164 400 T-ICGCVNFARRTSCFQCNEARTDDA 424 (1049)
Q Consensus 400 ~-~~~~~n~~~r~~~~~~~~~~~~~~ 424 (1049)
+ .|...||+++..|.+|..++....
T Consensus 222 ~~~c~N~nfa~r~~cnrck~~Kp~~~ 247 (351)
T KOG1995|consen 222 PPSCGNRNFAWREECNRCKAPKPERS 247 (351)
T ss_pred cccccccccccccccccccCCCcccc
Confidence 9 999999999999999999987653
No 126
>PF12656 G-patch_2: DExH-box splicing factor binding site
Probab=98.38 E-value=1.8e-07 Score=83.29 Aligned_cols=50 Identities=32% Similarity=0.692 Sum_probs=47.5
Q ss_pred ccCCCCcHHHHHHHhcCCCCCCCCCCCCCCcccceeEEEccCCccccccC
Q 043164 969 KAIDENNVGNRMLRSMGWHEGLGLGKDGSGMIEPVQAQAMDSRAGLGSQQ 1018 (1049)
Q Consensus 969 ~~i~~~n~g~~ml~~mGw~~G~gLG~~~~G~~~pi~~~~~~~~~GlG~~~ 1018 (1049)
..|+..++|..||+-|||++|+|+|++.++.+.||....+..+.|||+..
T Consensus 25 ~~vPVe~FG~AlLRGMGW~~~~~~g~~~~~~~~~~~~~~Rp~~lGLGA~~ 74 (77)
T PF12656_consen 25 EAVPVEEFGAALLRGMGWKPGEGIGKNKKKSVKPVEPKRRPKGLGLGAKP 74 (77)
T ss_pred hhCCHHHHHHHHHHHcCCCCCCCCCCCcccccCcccccccccCcCCCcCC
Confidence 46889999999999999999999999999999999999999999999975
No 127
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.34 E-value=4.4e-08 Score=117.44 Aligned_cols=146 Identities=24% Similarity=0.275 Sum_probs=123.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEeec
Q 043164 286 SGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYS 365 (1049)
Q Consensus 286 s~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~A 365 (1049)
..++||.||+..+.+.+|...|..+|.|..|+|...++++..+|+|||+|..+++|.+||... .+..+ |
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~--d~~~~-g-------- 735 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFR--DSCFF-G-------- 735 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhh--hhhhh-h--------
Confidence 468999999999999999999999999988888867788999999999999999999999764 11111 0
Q ss_pred CCCCCCCCCCCCccccccccccCCCCCCCCccccccccccccccccccccccCCCCCCCCcccCCCCCCCCCCCCCCCCC
Q 043164 366 SKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKGSDTG 445 (1049)
Q Consensus 366 ~~p~~~~~~~~~~~~~~~~~~~~~r~~~p~dw~~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 445 (1049)
T Consensus 736 -------------------------------------------------------------------------------- 735 (881)
T KOG0128|consen 736 -------------------------------------------------------------------------------- 735 (881)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~ 525 (1049)
...|+|.|+|+..|.+.|+.+|.++|.+..+.++..+ .|+.+|.|||.|.+..+|.+++..+.+..+ ..+.+.|..
T Consensus 736 -K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~--rE~~~~v~v 811 (881)
T KOG0128|consen 736 -KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAGK--RENNGEVQV 811 (881)
T ss_pred -hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchhhhh--hhcCccccc
Confidence 1368999999999999999999999999999888766 688999999999999999999988887766 345555555
Q ss_pred e
Q 043164 526 A 526 (1049)
Q Consensus 526 A 526 (1049)
.
T Consensus 812 s 812 (881)
T KOG0128|consen 812 S 812 (881)
T ss_pred c
Confidence 3
No 128
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.28 E-value=2.2e-06 Score=98.05 Aligned_cols=84 Identities=25% Similarity=0.348 Sum_probs=77.7
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~ 525 (1049)
-...|||.+|...+-..+|+.+|++||.|+-++|+.+.-+.-.++|+||++.+..+|.++|..||-..| .|+.|.|..
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTEL--HGrmISVEk 481 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTEL--HGRMISVEK 481 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhh--cceeeeeee
Confidence 357899999999999999999999999999999999877777899999999999999999999999999 799999999
Q ss_pred eecCCC
Q 043164 526 AKSILG 531 (1049)
Q Consensus 526 Ak~k~~ 531 (1049)
++..+.
T Consensus 482 aKNEp~ 487 (940)
T KOG4661|consen 482 AKNEPG 487 (940)
T ss_pred cccCcc
Confidence 988754
No 129
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.26 E-value=2.1e-06 Score=92.38 Aligned_cols=84 Identities=30% Similarity=0.456 Sum_probs=76.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEE
Q 043164 283 VAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFF 362 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V 362 (1049)
..-+.+|+|.|||..|++++|+++|+.||.+..+.|..++ .|.+.|.|=|.|...++|..||+.+ +++.++|+.|+|
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~--~gv~ldG~~mk~ 156 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKY--NGVALDGRPMKI 156 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHh--cCcccCCceeee
Confidence 3445789999999999999999999999999999999985 7999999999999999999999999 999999999999
Q ss_pred eecCCCC
Q 043164 363 EYSSKPT 369 (1049)
Q Consensus 363 ~~A~~p~ 369 (1049)
.....|.
T Consensus 157 ~~i~~~~ 163 (243)
T KOG0533|consen 157 EIISSPS 163 (243)
T ss_pred EEecCcc
Confidence 9875443
No 130
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.26 E-value=4.7e-06 Score=77.53 Aligned_cols=77 Identities=25% Similarity=0.356 Sum_probs=69.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhc--CCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeC----CeeE
Q 043164 287 GTIVVKGLSQKTTEEDLYQILAEW--GPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVD----GRKL 360 (1049)
Q Consensus 287 ~~L~V~nLp~~~tee~L~~~F~~~--G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~----Gr~i 360 (1049)
+||+|+|||...|.++|.+++... |...-+.|+.|..++.+.|||||.|.+++.|....+.+ +|..+. .+.+
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f--~g~~w~~~~s~Kvc 79 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAF--NGKKWPNFNSKKVC 79 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHH--cCCccccCCCCcEE
Confidence 589999999999999999999753 67788999999999999999999999999999999999 888775 5677
Q ss_pred EEeec
Q 043164 361 FFEYS 365 (1049)
Q Consensus 361 ~V~~A 365 (1049)
.|.||
T Consensus 80 ~i~yA 84 (97)
T PF04059_consen 80 EISYA 84 (97)
T ss_pred EEehh
Confidence 88886
No 131
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.24 E-value=2.5e-06 Score=93.48 Aligned_cols=76 Identities=24% Similarity=0.506 Sum_probs=68.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEe
Q 043164 284 APSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFE 363 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~ 363 (1049)
....+|||++|-..++|.+|+++|.+||+|..|.+... +|+|||+|.+.+.|+.|.+.+ -+.+.|+|+.|+|.
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~-~n~lvI~G~Rl~i~ 298 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKS-FNKLVINGFRLKIK 298 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhh-cceeeecceEEEEE
Confidence 44579999999999999999999999999999999875 359999999999999999886 47899999999999
Q ss_pred ecC
Q 043164 364 YSS 366 (1049)
Q Consensus 364 ~A~ 366 (1049)
|..
T Consensus 299 Wg~ 301 (377)
T KOG0153|consen 299 WGR 301 (377)
T ss_pred eCC
Confidence 963
No 132
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.22 E-value=1.1e-06 Score=101.60 Aligned_cols=72 Identities=24% Similarity=0.489 Sum_probs=65.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEE
Q 043164 283 VAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLF 361 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~ 361 (1049)
..+..+|+|-|||..|++++|..+|+.||+|..|+.-. ..+|.+||+|-++.+|+.|+++| ++..|.|+.|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~-----~~~~~~~v~FyDvR~A~~Alk~l--~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP-----NKRGIVFVEFYDVRDAERALKAL--NRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc-----ccCceEEEEEeehHhHHHHHHHH--HHHHhhhhhhc
Confidence 35678999999999999999999999999999977644 45789999999999999999999 99999999998
No 133
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=98.20 E-value=1.2e-06 Score=88.96 Aligned_cols=50 Identities=32% Similarity=0.642 Sum_probs=47.8
Q ss_pred cCCCCcHHHHHHHhcCCCCCCCCCCCCCCcccceeEEEccCCccccccCC
Q 043164 970 AIDENNVGNRMLRSMGWHEGLGLGKDGSGMIEPVQAQAMDSRAGLGSQQK 1019 (1049)
Q Consensus 970 ~i~~~n~g~~ml~~mGw~~G~gLG~~~~G~~~pi~~~~~~~~~GlG~~~~ 1019 (1049)
.|+.+|+|++||-+-||.++.|||.+++|...||.+..++++.|||....
T Consensus 124 ~i~pks~GyrLl~~~GW~pe~GLGp~~~Grr~PvrTvlkkdr~GLG~e~~ 173 (223)
T KOG2384|consen 124 LIKPKSLGYRLLSQYGWSPEAGLGPENQGRRAPVRTVLKKDRIGLGTEID 173 (223)
T ss_pred cCCCCCchHHHHHhcCCCcccCCCccccCcccchhHHHhhcccccchhhc
Confidence 48999999999999999999999999999999999999999999999764
No 134
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.18 E-value=3.2e-06 Score=96.74 Aligned_cols=82 Identities=20% Similarity=0.372 Sum_probs=75.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEe
Q 043164 284 APSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFE 363 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~ 363 (1049)
.-++.|||.+|...+-..+|++||++||.|+-.+|+.+..+.-.+.|+||++.+.++|.+||..| +.+.|.|+.|.|+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hL--HrTELHGrmISVE 480 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHL--HRTELHGRMISVE 480 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHh--hhhhhcceeeeee
Confidence 34578999999999999999999999999999999998777777889999999999999999999 9999999999999
Q ss_pred ecCC
Q 043164 364 YSSK 367 (1049)
Q Consensus 364 ~A~~ 367 (1049)
.+..
T Consensus 481 kaKN 484 (940)
T KOG4661|consen 481 KAKN 484 (940)
T ss_pred eccc
Confidence 8743
No 135
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.18 E-value=9.1e-06 Score=75.62 Aligned_cols=81 Identities=21% Similarity=0.322 Sum_probs=70.6
Q ss_pred ceEEEeCCCccCcHHHHHHHhhc--cCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeec--cCCeEEEE
Q 043164 448 HVLVVRGLDEYADEEMLRYEFSK--HAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLE--KNGQILRV 523 (1049)
Q Consensus 448 ~~LfV~NLp~~~teedLre~Fs~--fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~--i~Gr~L~V 523 (1049)
+||.|+|||...+.++|.+++.. .|....+.|+.|-.++.+.|||||.|.+++.|.+-.+.++|..+. -..+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 48999999999999999988875 367888999999989999999999999999999999999998774 23677788
Q ss_pred EEeec
Q 043164 524 AYAKS 528 (1049)
Q Consensus 524 ~~Ak~ 528 (1049)
.||+-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 88764
No 136
>KOG2184 consensus Tuftelin-interacting protein TIP39, contains G-patch domain [RNA processing and modification]
Probab=98.15 E-value=1e-06 Score=106.55 Aligned_cols=52 Identities=33% Similarity=0.663 Sum_probs=47.7
Q ss_pred ccCCCCcHHHHHHHhcCCCCCCCCCCCCCCcccceeEEEccCCccccccCCc
Q 043164 969 KAIDENNVGNRMLRSMGWHEGLGLGKDGSGMIEPVQAQAMDSRAGLGSQQKK 1020 (1049)
Q Consensus 969 ~~i~~~n~g~~ml~~mGw~~G~gLG~~~~G~~~pi~~~~~~~~~GlG~~~~~ 1020 (1049)
..-...+||.+||++||+++|.|||+++|||++||+++.+..++|||+-+..
T Consensus 111 ~e~~t~gig~Kll~kMGYkpG~GLGkn~qGIv~Pieaq~Rp~rgg~Gay~~e 162 (767)
T KOG2184|consen 111 FEKGTKGIGAKLLEKMGYKPGKGLGKNAQGIVAPIEAQLRPGRGGLGAYGFE 162 (767)
T ss_pred hhhcccchhHHHHHHcCCccccccCccccccccHHhcccCccCccccccccc
Confidence 3457789999999999999999999999999999999999999999997653
No 137
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.11 E-value=2.9e-06 Score=94.89 Aligned_cols=79 Identities=24% Similarity=0.410 Sum_probs=74.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEee
Q 043164 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEY 364 (1049)
Q Consensus 285 ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~ 364 (1049)
...+|||++||..+++++|++.|++||.|..+.++.|+.+..++||+||.|.+.+.+.+++.. ..+.|+|+.+.|..
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~---~f~~~~gk~vevkr 172 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQ---KFHDFNGKKVEVKR 172 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceeccc---ceeeecCceeeEee
Confidence 567999999999999999999999999999999999999999999999999999999999954 78999999999998
Q ss_pred cC
Q 043164 365 SS 366 (1049)
Q Consensus 365 A~ 366 (1049)
|.
T Consensus 173 A~ 174 (311)
T KOG4205|consen 173 AI 174 (311)
T ss_pred cc
Confidence 73
No 138
>KOG3673 consensus FtsJ-like RNA methyltransferase [RNA processing and modification]
Probab=98.09 E-value=1.6e-06 Score=99.07 Aligned_cols=47 Identities=40% Similarity=0.656 Sum_probs=44.8
Q ss_pred CCcHHHHHHHhcCCCCCCCCCCCCCCcccceeEEEccCCccccccCC
Q 043164 973 ENNVGNRMLRSMGWHEGLGLGKDGSGMIEPVQAQAMDSRAGLGSQQK 1019 (1049)
Q Consensus 973 ~~n~g~~ml~~mGw~~G~gLG~~~~G~~~pi~~~~~~~~~GlG~~~~ 1019 (1049)
-.++..+||.|||+++|+||||.+||+.|||.+....++.|||+.-.
T Consensus 82 y~~va~~lMakMG~~~geGLGK~~QGr~epi~as~Q~GRrGlGl~l~ 128 (845)
T KOG3673|consen 82 YLTVAERLMAKMGHKAGEGLGKHGQGRSEPIAASTQRGRRGLGLNLK 128 (845)
T ss_pred cchHHHHHHHHhCccccccccccCCCccchhhhhhhccccccCccch
Confidence 67999999999999999999999999999999999999999999754
No 139
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.05 E-value=6.4e-06 Score=95.45 Aligned_cols=78 Identities=26% Similarity=0.450 Sum_probs=66.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEe
Q 043164 284 APSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFE 363 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~ 363 (1049)
....+|||+|||+++++.+|.++|..||+|....|..-...+....||||+|.+.+++..||.+ +.+.|+++.|.|+
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A---sp~~ig~~kl~Ve 362 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA---SPLEIGGRKLNVE 362 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc---CccccCCeeEEEE
Confidence 3445699999999999999999999999998777765432344447999999999999999987 7999999999998
Q ss_pred e
Q 043164 364 Y 364 (1049)
Q Consensus 364 ~ 364 (1049)
-
T Consensus 363 e 363 (419)
T KOG0116|consen 363 E 363 (419)
T ss_pred e
Confidence 7
No 140
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.99 E-value=7.4e-06 Score=88.44 Aligned_cols=80 Identities=19% Similarity=0.305 Sum_probs=75.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEE
Q 043164 283 VAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFF 362 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V 362 (1049)
..+...|||+|+.+.+|.++|...|+.||.|..|.|..|+.+|.++|||||+|.+.+.+..|+. | ++..|.|+.|.|
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l--~gs~i~~~~i~v 174 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-L--DGSEIPGPAIEV 174 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-c--CCccccccccee
Confidence 3556799999999999999999999999999999999999999999999999999999999997 7 999999999999
Q ss_pred eec
Q 043164 363 EYS 365 (1049)
Q Consensus 363 ~~A 365 (1049)
.+-
T Consensus 175 t~~ 177 (231)
T KOG4209|consen 175 TLK 177 (231)
T ss_pred eee
Confidence 884
No 141
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.96 E-value=6.7e-05 Score=77.84 Aligned_cols=85 Identities=27% Similarity=0.319 Sum_probs=70.1
Q ss_pred CCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEee-cCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeec-cCCeEEE
Q 043164 445 GPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVR-DKFTHVSRGFAFLHFHSVEDASKALEATNGTTLE-KNGQILR 522 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~r-D~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~-i~Gr~L~ 522 (1049)
+..++|||.+||.++..-+|..+|-.|-..+.+.|.. ++.....+-+|||.|.+.+.|..|+.+|||..|. -.+..|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 3468999999999999999999999998776665543 3333334579999999999999999999999874 2578999
Q ss_pred EEEeecC
Q 043164 523 VAYAKSI 529 (1049)
Q Consensus 523 V~~Ak~k 529 (1049)
|.+||..
T Consensus 112 iElAKSN 118 (284)
T KOG1457|consen 112 IELAKSN 118 (284)
T ss_pred eeehhcC
Confidence 9999875
No 142
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.95 E-value=2.1e-05 Score=84.78 Aligned_cols=80 Identities=23% Similarity=0.295 Sum_probs=72.2
Q ss_pred cceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEEe
Q 043164 447 THVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYA 526 (1049)
Q Consensus 447 s~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~A 526 (1049)
..+|+|.||+..++++||+++|..||.+..+-|-.++ .|.+.|.|-|.|...++|..||+.+||..+ +|+.|++...
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~l--dG~~mk~~~i 159 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVAL--DGRPMKIEII 159 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCccc--CCceeeeEEe
Confidence 3579999999999999999999999999888888876 789999999999999999999999999666 8999999876
Q ss_pred ecC
Q 043164 527 KSI 529 (1049)
Q Consensus 527 k~k 529 (1049)
.+.
T Consensus 160 ~~~ 162 (243)
T KOG0533|consen 160 SSP 162 (243)
T ss_pred cCc
Confidence 543
No 143
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.94 E-value=3.2e-05 Score=90.95 Aligned_cols=199 Identities=16% Similarity=0.037 Sum_probs=126.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEeecC
Q 043164 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYSS 366 (1049)
Q Consensus 287 ~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~A~ 366 (1049)
+.+-+.+++++..+.+++++|... .|..+.|..+...+-..|-++|+|....++++|++. |...+-.+.|.|.-+.
T Consensus 312 ~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r---n~~~~~~R~~q~~P~g 387 (944)
T KOG4307|consen 312 YYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR---NPSDDVNRPFQTGPPG 387 (944)
T ss_pred heeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhc---CchhhhhcceeecCCC
Confidence 456678999999999999998643 244556666655555688999999999999999865 6677777888875531
Q ss_pred CCCCCCCCCCCccccccccccCCCCCCCCccccccccccccccccccccccCCCCCCCCcccCCCCCCCCCCCCCCCCCC
Q 043164 367 KPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKGSDTGP 446 (1049)
Q Consensus 367 ~p~~~~~~~~~~~~~~~~~~~~~r~~~p~dw~~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~p 446 (1049)
.- .|....- ...+... ...+...+.....+.. ....-.........
T Consensus 388 ~~---------------------------~~~~a~~-~~~~~~~-~~~~~~hg~p~~~pr~-----~~~~gq~vp~P~~a 433 (944)
T KOG4307|consen 388 NL---------------------------GRNGAPP-FQAGVPP-PVIQNNHGRPIAPPRA-----MVRPGQNVPFPGGA 433 (944)
T ss_pred cc---------------------------ccccCcc-ccccCCC-CcccccCCCCCCCccc-----ccCCCCCCCCCCCc
Confidence 10 0110000 0000000 0000000000000000 00000111222345
Q ss_pred cceEEEeCCCccCcHHHHHHHhhccCCeee-EEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEE
Q 043164 447 THVLVVRGLDEYADEEMLRYEFSKHAPIKD-LRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525 (1049)
Q Consensus 447 s~~LfV~NLp~~~teedLre~Fs~fG~I~~-v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~ 525 (1049)
+.+|||..||..+++.++.++|.....|+. |.|... .++.-++-|||+|..++++.+|+..-+.+ +++.+.|+|.-
T Consensus 434 g~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~-P~~~~~~~afv~F~~~~a~~~a~~~~~k~--y~G~r~irv~s 510 (944)
T KOG4307|consen 434 GGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRL-PTDLLRPAAFVAFIHPTAPLTASSVKTKF--YPGHRIIRVDS 510 (944)
T ss_pred cceEEeccCCccccccchhhhhhhhhhhhheeEeccC-Ccccccchhhheeccccccchhhhccccc--ccCceEEEeec
Confidence 789999999999999999999999888877 555554 37778899999999988888887654444 44899999975
Q ss_pred e
Q 043164 526 A 526 (1049)
Q Consensus 526 A 526 (1049)
.
T Consensus 511 i 511 (944)
T KOG4307|consen 511 I 511 (944)
T ss_pred h
Confidence 3
No 144
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.93 E-value=7.7e-06 Score=86.33 Aligned_cols=80 Identities=19% Similarity=0.390 Sum_probs=74.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEe
Q 043164 284 APSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFE 363 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~ 363 (1049)
....+||.+.|...++.+.|...|.+|-.....++++|+.||+++||+||-|.++.++..||..| +|..++.++|++.
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem--~gkyVgsrpiklR 265 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREM--NGKYVGSRPIKLR 265 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhh--cccccccchhHhh
Confidence 34578999999999999999999999988889999999999999999999999999999999999 9999999999986
Q ss_pred ec
Q 043164 364 YS 365 (1049)
Q Consensus 364 ~A 365 (1049)
-+
T Consensus 266 kS 267 (290)
T KOG0226|consen 266 KS 267 (290)
T ss_pred hh
Confidence 53
No 145
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.79 E-value=4.4e-05 Score=88.61 Aligned_cols=79 Identities=24% Similarity=0.288 Sum_probs=65.6
Q ss_pred ceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEEee
Q 043164 448 HVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYAK 527 (1049)
Q Consensus 448 ~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~Ak 527 (1049)
..|||+|||.+++..+|.++|..||.|+...|..-.-.+...+||||+|.+..++..||++- ++.|+++.|.|.--+
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As---p~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS---PLEIGGRKLNVEEKR 365 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC---ccccCCeeEEEEecc
Confidence 35999999999999999999999999998877653323344499999999999999999875 666799999998755
Q ss_pred cC
Q 043164 528 SI 529 (1049)
Q Consensus 528 ~k 529 (1049)
..
T Consensus 366 ~~ 367 (419)
T KOG0116|consen 366 PG 367 (419)
T ss_pred cc
Confidence 53
No 146
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.78 E-value=3.4e-05 Score=85.63 Aligned_cols=201 Identities=15% Similarity=0.164 Sum_probs=114.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCC---CCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEe
Q 043164 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERN---SGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFE 363 (1049)
Q Consensus 287 ~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~---tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~ 363 (1049)
..|.|.||.+.+|.++++.+|...|.|.++.|+.+.. .....-.|||.|.+...+..|...- |.++|+--.|.|-
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLt--ntvfvdraliv~p 85 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLT--NTVFVDRALIVRP 85 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhc--cceeeeeeEEEEe
Confidence 3799999999999999999999999999999987422 2344558999999999999998653 5555554445444
Q ss_pred ecCCCCCCCCCCCCcccccc-ccccCCC-CCCCCccccccccccccccccccccccCCCCCCCCcccCCCC-CCCCCCCC
Q 043164 364 YSSKPTGGSGGHYGQESAMG-ARHSNHK-STIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSS-NPIPLGKK 440 (1049)
Q Consensus 364 ~A~~p~~~~~~~~~~~~~~~-~~~~~~r-~~~p~dw~~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~s-~~~~~~~~ 440 (1049)
|...+. ....++. ....+.. ...+.|-+ -+..+... +.+.. +.+-+... .++.....
T Consensus 86 ~~~~~~-------p~r~af~~l~~~navprll~pdg~-------Lp~~~~lt-~~nh~-----p~ailktP~Lp~~~~A~ 145 (479)
T KOG4676|consen 86 YGDEVI-------PDRFAFVELADQNAVPRLLPPDGV-------LPGDRPLT-KINHS-----PNAILKTPELPPQAAAK 145 (479)
T ss_pred cCCCCC-------ccHHHHHhcCcccccccccCCCCc-------cCCCCccc-cccCC-----ccceecCCCCChHhhhh
Confidence 432111 1111110 0000000 01111100 00000000 00000 00000000 00000000
Q ss_pred CCCCCCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeec
Q 043164 441 GSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLE 515 (1049)
Q Consensus 441 ~~~~~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~ 515 (1049)
... .--.+|+|.+|+..+...++.++|..+|.|...++--. ...-+|.|+|........|+. ++|+.|.
T Consensus 146 kle-eirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask----~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 146 KLE-EIRRTREVQSLISAAILPESGESFERKGEVSYAHTASK----SRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred hhH-HHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhcc----CCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 001 11367999999999999999999999999987766532 233477799987777777766 4677774
No 147
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.77 E-value=4.8e-05 Score=89.94 Aligned_cols=80 Identities=19% Similarity=0.389 Sum_probs=71.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCC---CCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeE
Q 043164 284 APSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERN---SGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKL 360 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~---tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i 360 (1049)
+..+.|||+||++.++|+.|...|..||||..|+|+.-+. ....+-++||-|.+..+|.+||+.| +|+.+.+..|
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~l--qg~iv~~~e~ 249 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKEL--QGIIVMEYEM 249 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHh--cceeeeeeee
Confidence 3457899999999999999999999999999999987532 2345569999999999999999999 9999999999
Q ss_pred EEeec
Q 043164 361 FFEYS 365 (1049)
Q Consensus 361 ~V~~A 365 (1049)
++.|+
T Consensus 250 K~gWg 254 (877)
T KOG0151|consen 250 KLGWG 254 (877)
T ss_pred eeccc
Confidence 99996
No 148
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.75 E-value=1.1e-05 Score=83.42 Aligned_cols=75 Identities=20% Similarity=0.310 Sum_probs=67.8
Q ss_pred cceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEE
Q 043164 447 THVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525 (1049)
Q Consensus 447 s~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~ 525 (1049)
..+|||.||...++|+.|.++|-+-|+|..|.|..++ .++.+ ||||.|.+.....-|++.|||..++ +..|.|.+
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~--~~e~q~~~ 83 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLE--EDEEQRTL 83 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhc--cchhhccc
Confidence 4689999999999999999999999999999999886 45566 9999999999999999999999885 78888776
No 149
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.75 E-value=1.7e-05 Score=92.16 Aligned_cols=71 Identities=28% Similarity=0.407 Sum_probs=63.9
Q ss_pred CCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEE
Q 043164 445 GPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILR 522 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~ 522 (1049)
.++.+|+|-|||..+++++|+.+|+.||.|+.|+... ..+|.+||+|-++-+|++|+++|++..| .|+.|+
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~-----~~~~~~~v~FyDvR~A~~Alk~l~~~~~--~~~~~k 143 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP-----NKRGIVFVEFYDVRDAERALKALNRREI--AGKRIK 143 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc-----ccCceEEEEEeehHhHHHHHHHHHHHHh--hhhhhc
Confidence 3577999999999999999999999999999966543 4679999999999999999999999999 588887
No 150
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=97.72 E-value=1.3e-05 Score=89.38 Aligned_cols=48 Identities=27% Similarity=0.674 Sum_probs=42.6
Q ss_pred ccCCCCcHHHHHHHhcCCCCCCCCCCCCCCcccceeEEEccCCccccc
Q 043164 969 KAIDENNVGNRMLRSMGWHEGLGLGKDGSGMIEPVQAQAMDSRAGLGS 1016 (1049)
Q Consensus 969 ~~i~~~n~g~~ml~~mGw~~G~gLG~~~~G~~~pi~~~~~~~~~GlG~ 1016 (1049)
.....-.||-+||.||||..|.|||+.++||++||.+++-..+..|..
T Consensus 292 We~hTRGIgsKLM~kMGY~~G~GLG~~g~GiV~pI~a~vlp~grSLDe 339 (486)
T KOG2185|consen 292 WENHTRGIGSKLMAKMGYREGMGLGVSGQGIVNPILAKVLPAGRSLDE 339 (486)
T ss_pred hccccchHHHHHHHHhchhhccccCcCCCccccchhhhhccCCCCHHH
Confidence 334455899999999999999999999999999999999998888864
No 151
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.70 E-value=6.7e-05 Score=81.10 Aligned_cols=81 Identities=21% Similarity=0.373 Sum_probs=74.9
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~ 525 (1049)
....+||+|+...++.++|..+|+.+|.|..|.|+.|+.++.++||+||+|.+.+.++.|+. |+|..| .|+.|.|.+
T Consensus 100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i--~~~~i~vt~ 176 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEI--PGPAIEVTL 176 (231)
T ss_pred CCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccc--ccccceeee
Confidence 35689999999999999999999999999999999999999999999999999999999999 999999 699999998
Q ss_pred eecC
Q 043164 526 AKSI 529 (1049)
Q Consensus 526 Ak~k 529 (1049)
.+-.
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 6554
No 152
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.69 E-value=7.2e-05 Score=88.52 Aligned_cols=88 Identities=22% Similarity=0.383 Sum_probs=74.7
Q ss_pred CCCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCC---CceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeE
Q 043164 444 TGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFT---HVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQI 520 (1049)
Q Consensus 444 ~~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~t---g~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~ 520 (1049)
...++.|||+||++.++++.|...|..||+|..|+|+-.... ...+-++||.|.+..+|++|++.|+|..+. +..
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~--~~e 248 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVM--EYE 248 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeee--eee
Confidence 345778999999999999999999999999999999865422 224569999999999999999999999885 999
Q ss_pred EEEEEeecCCCCC
Q 043164 521 LRVAYAKSILGPG 533 (1049)
Q Consensus 521 L~V~~Ak~k~~~~ 533 (1049)
+++.|++.-+-+.
T Consensus 249 ~K~gWgk~V~ip~ 261 (877)
T KOG0151|consen 249 MKLGWGKAVPIPN 261 (877)
T ss_pred eeeccccccccCC
Confidence 9999987764443
No 153
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.67 E-value=0.00047 Score=76.60 Aligned_cols=163 Identities=17% Similarity=0.160 Sum_probs=107.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEee
Q 043164 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEY 364 (1049)
Q Consensus 285 ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~ 364 (1049)
.+.-|-.++||...+..+|..||.......-...+-....|+..|.|.|.|.+.+.-..|++. +...+.++.|.|--
T Consensus 59 ~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR---hkhh~g~ryievYk 135 (508)
T KOG1365|consen 59 DNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR---HKHHMGTRYIEVYK 135 (508)
T ss_pred cceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh---hhhhccCCceeeec
Confidence 344567889999999999999998653332222222224577788999999999999999977 77888899998865
Q ss_pred cCCCCCCCCCCCCccccccccccCCCCCCCCccccccccccccccccccccccCCCCCCCCcccCCCCCCCCCCCCCCCC
Q 043164 365 SSKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKGSDT 444 (1049)
Q Consensus 365 A~~p~~~~~~~~~~~~~~~~~~~~~r~~~p~dw~~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 444 (1049)
+.. +++++.. +....++..-+...
T Consensus 136 a~g-----------e~f~~ia---------------------------------gg~s~e~~~flsk~------------ 159 (508)
T KOG1365|consen 136 ATG-----------EEFLKIA---------------------------------GGTSNEAAPFLSKE------------ 159 (508)
T ss_pred cCc-----------hhheEec---------------------------------CCccccCCCCCCcc------------
Confidence 411 1111000 00000000000000
Q ss_pred CCcceEEEeCCCccCcHHHHHHHhhccC----CeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHH
Q 043164 445 GPTHVLVVRGLDEYADEEMLRYEFSKHA----PIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEA 508 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLre~Fs~fG----~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~ 508 (1049)
.--.|-+++||+++++.+|.++|.+-- ..+.|-+++- .+|...|-|||.|...++|+.|+..
T Consensus 160 -~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 160 -NQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFACEEDAQFALRK 225 (508)
T ss_pred -cceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecCHHHHHHHHHH
Confidence 112577899999999999999997432 3344444433 3678899999999999999999975
No 154
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.65 E-value=0.00011 Score=80.90 Aligned_cols=80 Identities=25% Similarity=0.244 Sum_probs=71.9
Q ss_pred cceEEEeCCCccCcHHHHHHHhhccCCee--------eEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCC
Q 043164 447 THVLVVRGLDEYADEEMLRYEFSKHAPIK--------DLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNG 518 (1049)
Q Consensus 447 s~~LfV~NLp~~~teedLre~Fs~fG~I~--------~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~G 518 (1049)
...|||.|||.++|.+++.++|+++|-|. .|+|.++. .|.-+|-|.|.|.-.+....|++.|++..| .|
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~--rg 210 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDEL--RG 210 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccc--cC
Confidence 34699999999999999999999999874 47788876 488999999999999999999999999999 69
Q ss_pred eEEEEEEeecC
Q 043164 519 QILRVAYAKSI 529 (1049)
Q Consensus 519 r~L~V~~Ak~k 529 (1049)
+.|+|.-|+-.
T Consensus 211 ~~~rVerAkfq 221 (382)
T KOG1548|consen 211 KKLRVERAKFQ 221 (382)
T ss_pred cEEEEehhhhh
Confidence 99999998754
No 155
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.63 E-value=6.9e-06 Score=91.55 Aligned_cols=149 Identities=21% Similarity=0.348 Sum_probs=116.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCC-eeeCCeeEEEee
Q 043164 287 GTIVVKGLSQKTTEEDLYQILAEWG-PLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDG-LVVDGRKLFFEY 364 (1049)
Q Consensus 287 ~~L~V~nLp~~~tee~L~~~F~~~G-~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng-~~i~Gr~i~V~~ 364 (1049)
..||++||.+.++..+|..+|...- ++..-.|++ .|||||.+.+..-|.+|++.| +| +.+.|+.+.|.+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k-------~gyafvd~pdq~wa~kaie~~--sgk~elqGkr~e~~~ 72 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK-------SGYAFVDCPDQQWANKAIETL--SGKVELQGKRQEVEH 72 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee-------cceeeccCCchhhhhhhHHhh--chhhhhcCceeeccc
Confidence 3689999999999999999997652 122222332 359999999999999999998 54 578899999887
Q ss_pred cCCCCCCCCCCCCccccccccccCCCCCCCCccccccccccccccccccccccCCCCCCCCcccCCCCCCCCCCCCCCCC
Q 043164 365 SSKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKGSDT 444 (1049)
Q Consensus 365 A~~p~~~~~~~~~~~~~~~~~~~~~r~~~p~dw~~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 444 (1049)
+-...
T Consensus 73 sv~kk--------------------------------------------------------------------------- 77 (584)
T KOG2193|consen 73 SVPKK--------------------------------------------------------------------------- 77 (584)
T ss_pred hhhHH---------------------------------------------------------------------------
Confidence 41100
Q ss_pred CCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEe-ecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEE
Q 043164 445 GPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLV-RDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRV 523 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~-rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V 523 (1049)
.-++.|-|+|+|+....+.|-.++..||.+..|..+ .+..| -..-|+|.+.+.+..||..|+|..|+ +..++|
T Consensus 78 qrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~et----avvnvty~~~~~~~~ai~kl~g~Q~e--n~~~k~ 151 (584)
T KOG2193|consen 78 QRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSET----AVVNVTYSAQQQHRQAIHKLNGPQLE--NQHLKV 151 (584)
T ss_pred HHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHH----HHHHHHHHHHHHHHHHHHhhcchHhh--hhhhhc
Confidence 014568899999999999999999999999988654 34332 24457889999999999999999995 777777
Q ss_pred EE
Q 043164 524 AY 525 (1049)
Q Consensus 524 ~~ 525 (1049)
.|
T Consensus 152 ~Y 153 (584)
T KOG2193|consen 152 GY 153 (584)
T ss_pred cc
Confidence 77
No 156
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.57 E-value=8.1e-05 Score=78.74 Aligned_cols=73 Identities=26% Similarity=0.326 Sum_probs=65.7
Q ss_pred eEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEEeec
Q 043164 449 VLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYAKS 528 (1049)
Q Consensus 449 ~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~Ak~ 528 (1049)
.|||++|++.+.+.+|..+|..||.|..|.+. .||+||+|.+..+|.-|+.-|||..| .|-.|.|.|+..
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l--~~e~~vve~~r~ 72 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKEL--CGERLVVEHARG 72 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCcee--cceeeeeecccc
Confidence 68999999999999999999999999998875 36999999999999999999999999 466699999887
Q ss_pred CCC
Q 043164 529 ILG 531 (1049)
Q Consensus 529 k~~ 531 (1049)
...
T Consensus 73 ~~~ 75 (216)
T KOG0106|consen 73 KRR 75 (216)
T ss_pred ccc
Confidence 543
No 157
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.52 E-value=5.4e-05 Score=81.20 Aligned_cols=46 Identities=28% Similarity=0.663 Sum_probs=39.8
Q ss_pred cHHHHHHHhcCCCCCCCCCCCCCCcccceeEEEccCCcc---ccccCCc
Q 043164 975 NVGNRMLRSMGWHEGLGLGKDGSGMIEPVQAQAMDSRAG---LGSQQKK 1020 (1049)
Q Consensus 975 n~g~~ml~~mGw~~G~gLG~~~~G~~~pi~~~~~~~~~G---lG~~~~~ 1020 (1049)
-+.++||+||||++|+||||++|||..++.+.....+.| +|+...+
T Consensus 213 tvA~~im~k~G~keGqGLGKsEQGlsTalsveKT~~rgG~IIv~a~~~k 261 (378)
T KOG1996|consen 213 TVAHKIMQKYGFKEGQGLGKSEQGLSTALSVEKTSKRGGKIIVGAATEK 261 (378)
T ss_pred hHHHHHHHHhCcccccCcCccccccccceeeeeccccCceeEecCcccc
Confidence 577999999999999999999999999999988888887 5555443
No 158
>KOG1994 consensus Predicted RNA binding protein, contains G-patch and Zn-finger domains [RNA processing and modification]
Probab=97.49 E-value=7.1e-05 Score=77.60 Aligned_cols=60 Identities=23% Similarity=0.337 Sum_probs=52.8
Q ss_pred chhhhhcccccCCCCcHHHHHHHhcCCCCCCCCCCCCCC---cccceeEEEccCCccccccCC
Q 043164 960 QSYEVITADKAIDENNVGNRMLRSMGWHEGLGLGKDGSG---MIEPVQAQAMDSRAGLGSQQK 1019 (1049)
Q Consensus 960 ~~~~~~~~~~~i~~~n~g~~ml~~mGw~~G~gLG~~~~G---~~~pi~~~~~~~~~GlG~~~~ 1019 (1049)
+...+-+...+|.+.|+|+.+|.+||+++|.-|||+..+ +++||-..++..+.|||..-.
T Consensus 67 ~~~la~~~~~~i~~e~~gf~lm~~Mg~kpg~~lgkq~e~~~~r~epI~~dI~~~r~g~G~ed~ 129 (268)
T KOG1994|consen 67 IKVLANTKRRGIRAEKPGFSLMNDMGMKPGRFLGKQSEMKNKRLEPIWYDIQVAREGMGDEDL 129 (268)
T ss_pred HHHhhhhccccccccCcChHHHHHhCCCccchhccccccccccccceeehHHHHhhccCcccc
Confidence 334444556778999999999999999999999999999 999999999999999998743
No 159
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.33 E-value=0.00015 Score=80.55 Aligned_cols=81 Identities=22% Similarity=0.261 Sum_probs=74.6
Q ss_pred cceEEEeCCCccCcHHHHHHHhhccCCee--------eEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCC
Q 043164 447 THVLVVRGLDEYADEEMLRYEFSKHAPIK--------DLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNG 518 (1049)
Q Consensus 447 s~~LfV~NLp~~~teedLre~Fs~fG~I~--------~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~G 518 (1049)
..+|||.+|+..+++.+|.++|.++|.|. .|.|-+|+.|+..+|-|.|.|.+...|+.||..+++..| .+
T Consensus 66 ~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf--~g 143 (351)
T KOG1995|consen 66 NETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF--CG 143 (351)
T ss_pred cccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc--cC
Confidence 46899999999999999999999999874 477888999999999999999999999999999999999 68
Q ss_pred eEEEEEEeecC
Q 043164 519 QILRVAYAKSI 529 (1049)
Q Consensus 519 r~L~V~~Ak~k 529 (1049)
.+|+|.+|...
T Consensus 144 n~ikvs~a~~r 154 (351)
T KOG1995|consen 144 NTIKVSLAERR 154 (351)
T ss_pred CCchhhhhhhc
Confidence 99999998775
No 160
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.13 E-value=0.00084 Score=63.88 Aligned_cols=72 Identities=18% Similarity=0.412 Sum_probs=47.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCC---CeeeCCeeEEEe
Q 043164 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDD---GLVVDGRKLFFE 363 (1049)
Q Consensus 287 ~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~n---g~~i~Gr~i~V~ 363 (1049)
..|.|.+++..++.++|+++|+.||.|..|.+...-. -|||.|.+.+.|+.|++.+... ++.|.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 4688999999999999999999999999999876532 8999999999999999988555 667777777665
Q ss_pred e
Q 043164 364 Y 364 (1049)
Q Consensus 364 ~ 364 (1049)
.
T Consensus 76 v 76 (105)
T PF08777_consen 76 V 76 (105)
T ss_dssp -
T ss_pred E
Confidence 4
No 161
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.96 E-value=0.0014 Score=62.27 Aligned_cols=72 Identities=24% Similarity=0.364 Sum_probs=45.9
Q ss_pred ceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCC---eeccCCeEEEEE
Q 043164 448 HVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGT---TLEKNGQILRVA 524 (1049)
Q Consensus 448 ~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~---~~~i~Gr~L~V~ 524 (1049)
..|+|.++...++-++|+++|+.||.|..|.+.++. ..|||.|.+.+.|+.|+..+.-. .+.|.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 478999999999999999999999999999988753 38999999999999999887543 555566666555
Q ss_pred E
Q 043164 525 Y 525 (1049)
Q Consensus 525 ~ 525 (1049)
.
T Consensus 76 v 76 (105)
T PF08777_consen 76 V 76 (105)
T ss_dssp -
T ss_pred E
Confidence 4
No 162
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=96.89 E-value=0.0034 Score=56.28 Aligned_cols=68 Identities=24% Similarity=0.353 Sum_probs=47.2
Q ss_pred ceEEEcCCCCCCCHHHH----HHHHhhcC-CeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEE
Q 043164 287 GTIVVKGLSQKTTEEDL----YQILAEWG-PLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLF 361 (1049)
Q Consensus 287 ~~L~V~nLp~~~tee~L----~~~F~~~G-~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~ 361 (1049)
..|+|.|||.......| +.++..+| .|..|. .+-|+|.|.+.+.|.+|++.| +|-.+.|..|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRm--egEdVfG~kI~ 70 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRM--EGEDVFGNKIS 70 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHH--TT--SSSS--E
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhh--cccccccceEE
Confidence 36899999999988765 45666775 565553 248999999999999999999 99999999999
Q ss_pred EeecC
Q 043164 362 FEYSS 366 (1049)
Q Consensus 362 V~~A~ 366 (1049)
|.|..
T Consensus 71 v~~~~ 75 (90)
T PF11608_consen 71 VSFSP 75 (90)
T ss_dssp EESS-
T ss_pred EEEcC
Confidence 99963
No 163
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=96.77 E-value=0.0036 Score=56.11 Aligned_cols=69 Identities=22% Similarity=0.296 Sum_probs=46.5
Q ss_pred ceEEEeCCCccCcHHHH----HHHhhccC-CeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEE
Q 043164 448 HVLVVRGLDEYADEEML----RYEFSKHA-PIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILR 522 (1049)
Q Consensus 448 ~~LfV~NLp~~~teedL----re~Fs~fG-~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~ 522 (1049)
..|+|.|||...+...| ++++.-+| .|..|. .|-|+|.|.+.+.|.+|++.|+|..+. |..|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVf--G~kI~ 70 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVF--GNKIS 70 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SS--SS--E
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccc--cceEE
Confidence 36999999999887765 56666676 455441 268999999999999999999999875 99999
Q ss_pred EEEeec
Q 043164 523 VAYAKS 528 (1049)
Q Consensus 523 V~~Ak~ 528 (1049)
|.|...
T Consensus 71 v~~~~~ 76 (90)
T PF11608_consen 71 VSFSPK 76 (90)
T ss_dssp EESS--
T ss_pred EEEcCC
Confidence 999643
No 164
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.76 E-value=0.0042 Score=72.47 Aligned_cols=78 Identities=28% Similarity=0.425 Sum_probs=63.8
Q ss_pred CCcceEEEeCCCccCcH------HHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCC
Q 043164 445 GPTHVLVVRGLDEYADE------EMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNG 518 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~te------edLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~G 518 (1049)
+-.++|+|-|+|.--.. -.|..+|+++|+|+++.++.+..+| .+||.|++|.+..+|..|++.|||..|. .+
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ld-kn 133 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLD-KN 133 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceec-cc
Confidence 34578999999864222 3367889999999999999987666 9999999999999999999999999996 45
Q ss_pred eEEEEE
Q 043164 519 QILRVA 524 (1049)
Q Consensus 519 r~L~V~ 524 (1049)
.++.|.
T Consensus 134 Htf~v~ 139 (698)
T KOG2314|consen 134 HTFFVR 139 (698)
T ss_pred ceEEee
Confidence 555554
No 165
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.63 E-value=0.0041 Score=67.22 Aligned_cols=80 Identities=24% Similarity=0.336 Sum_probs=62.4
Q ss_pred CcceEEEeCCC--ccCc---HHHHHHHhhccCCeeeEEEeecCCCCce-eeEEEEEeCCHHHHHHHHHHhCCCeeccCCe
Q 043164 446 PTHVLVVRGLD--EYAD---EEMLRYEFSKHAPIKDLRLVRDKFTHVS-RGFAFLHFHSVEDASKALEATNGTTLEKNGQ 519 (1049)
Q Consensus 446 ps~~LfV~NLp--~~~t---eedLre~Fs~fG~I~~v~I~rD~~tg~S-rGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr 519 (1049)
++.+|+++|+- ..++ ++++.+.|.+||.|..|.|...+....- .--.||+|..++.|.+|+-.|||+.| +|+
T Consensus 280 ptkvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyF--GGr 357 (378)
T KOG1996|consen 280 PTKVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYF--GGR 357 (378)
T ss_pred chHHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCcee--cce
Confidence 45677787773 2343 3568999999999999988776432222 23579999999999999999999999 899
Q ss_pred EEEEEEee
Q 043164 520 ILRVAYAK 527 (1049)
Q Consensus 520 ~L~V~~Ak 527 (1049)
.+..+|-.
T Consensus 358 ~v~A~Fyn 365 (378)
T KOG1996|consen 358 VVSACFYN 365 (378)
T ss_pred eeeheecc
Confidence 99998843
No 166
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.57 E-value=0.0041 Score=68.19 Aligned_cols=81 Identities=17% Similarity=0.382 Sum_probs=63.3
Q ss_pred cceEEEeCCCccCcHHHH------HHHhhccCCeeeEEEeecCCCCc-eee--EEEEEeCCHHHHHHHHHHhCCCeeccC
Q 043164 447 THVLVVRGLDEYADEEML------RYEFSKHAPIKDLRLVRDKFTHV-SRG--FAFLHFHSVEDASKALEATNGTTLEKN 517 (1049)
Q Consensus 447 s~~LfV~NLp~~~teedL------re~Fs~fG~I~~v~I~rD~~tg~-SrG--fAFVeF~s~e~A~kAl~~LnG~~~~i~ 517 (1049)
.+-+||-+|++.+-.|++ .++|.+||.|..|.|-+-..... ..+ -+||+|.+.++|..||..++|..+ +
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~--D 191 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLL--D 191 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccc--c
Confidence 457899999988755552 57899999999888876431111 122 349999999999999999999988 8
Q ss_pred CeEEEEEEeecC
Q 043164 518 GQILRVAYAKSI 529 (1049)
Q Consensus 518 Gr~L~V~~Ak~k 529 (1049)
|+.|+..|..-+
T Consensus 192 Gr~lkatYGTTK 203 (480)
T COG5175 192 GRVLKATYGTTK 203 (480)
T ss_pred CceEeeecCchH
Confidence 999999997654
No 167
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.53 E-value=0.002 Score=72.08 Aligned_cols=79 Identities=30% Similarity=0.490 Sum_probs=71.3
Q ss_pred CCCceEE-EcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEE
Q 043164 284 APSGTIV-VKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFF 362 (1049)
Q Consensus 284 ~ps~~L~-V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V 362 (1049)
.++.++| |++|+..+++++|...|..+|.|+.|++..+..++.++|||||.|.....+..++.. ....|.++++.|
T Consensus 182 ~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 258 (285)
T KOG4210|consen 182 GPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND---QTRSIGGRPLRL 258 (285)
T ss_pred CccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc---ccCcccCccccc
Confidence 4455666 999999999999999999999999999999999999999999999999999998853 567889999999
Q ss_pred eec
Q 043164 363 EYS 365 (1049)
Q Consensus 363 ~~A 365 (1049)
.+.
T Consensus 259 ~~~ 261 (285)
T KOG4210|consen 259 EED 261 (285)
T ss_pred ccC
Confidence 985
No 168
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.40 E-value=0.0026 Score=70.01 Aligned_cols=76 Identities=22% Similarity=0.308 Sum_probs=68.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCC--eeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEeec
Q 043164 288 TIVVKGLSQKTTEEDLYQILAEWGP--LRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYS 365 (1049)
Q Consensus 288 ~L~V~nLp~~~tee~L~~~F~~~G~--i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~A 365 (1049)
.+|||||-+.+|.++|.+.+...|- +.++++..++.+|.+||||+|...+....++.|+.| -...|.|+.-.|--+
T Consensus 82 ~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiL--P~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 82 CCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEIL--PTKTIHGQSPTVLSY 159 (498)
T ss_pred EEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhc--ccceecCCCCeeecc
Confidence 7899999999999999999988874 688888889999999999999999999999999999 888999987776554
No 169
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.36 E-value=0.0079 Score=71.62 Aligned_cols=76 Identities=18% Similarity=0.204 Sum_probs=66.5
Q ss_pred ceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEE
Q 043164 448 HVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525 (1049)
Q Consensus 448 ~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~ 525 (1049)
.+|-+.|+|++++-+||.++|..|-.+-.-.+++-...|...|-|.|.|.+.++|..|...|+++.| .+++|.+..
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i--~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKI--RNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcc--cceeEEEEe
Confidence 4899999999999999999999998875555555456789999999999999999999999999999 588888753
No 170
>KOG4315 consensus G-patch nucleic acid binding protein [General function prediction only]
Probab=96.27 E-value=0.0039 Score=70.62 Aligned_cols=49 Identities=33% Similarity=0.583 Sum_probs=43.2
Q ss_pred ccCCCCcHHHHHHHhcCCCCCCCCCCCCCCcccceeEEEccCCccccccC
Q 043164 969 KAIDENNVGNRMLRSMGWHEGLGLGKDGSGMIEPVQAQAMDSRAGLGSQQ 1018 (1049)
Q Consensus 969 ~~i~~~n~g~~ml~~mGw~~G~gLG~~~~G~~~pi~~~~~~~~~GlG~~~ 1018 (1049)
..|+...+|..||+-|||++|.|+|+++|+ +.+.....+..+.|||+..
T Consensus 149 eaiPVe~FGlAmLrG~GWkpg~gigk~~q~-v~~~~~~~rpkglGLGa~~ 197 (455)
T KOG4315|consen 149 EAIPVEGFGLAMLRGMGWKPGPGIGKNKQD-VKIKEPFLRPKGLGLGADP 197 (455)
T ss_pred ccCchhHHHHHHHhcCCCCCCCCcCcCCcc-ccccccccCCCCcccCCCc
Confidence 468999999999999999999999999665 5566788999999999974
No 171
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.27 E-value=0.024 Score=60.84 Aligned_cols=86 Identities=21% Similarity=0.324 Sum_probs=68.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCC--eeeCCeeEEEee
Q 043164 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDG--LVVDGRKLFFEY 364 (1049)
Q Consensus 287 ~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng--~~i~Gr~i~V~~ 364 (1049)
..|||.||...+..+.|.+.|..||+|....++.| ..++..|-++|+|...-.|.+|+..+...+ ..+.++++.|..
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 78999999999999999999999999977666666 467888899999999999999998873333 345677777776
Q ss_pred cCCCCCCCC
Q 043164 365 SSKPTGGSG 373 (1049)
Q Consensus 365 A~~p~~~~~ 373 (1049)
+..+-+..+
T Consensus 111 ~eq~~d~~G 119 (275)
T KOG0115|consen 111 MEQPDDNDG 119 (275)
T ss_pred hhccCCCCc
Confidence 655444433
No 172
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.21 E-value=0.0088 Score=65.68 Aligned_cols=78 Identities=23% Similarity=0.474 Sum_probs=61.5
Q ss_pred CceEEEcCCCCCCCHHHH------HHHHhhcCCeeEEEEeecCCC-CCccceE--EEEcCCHHHHHHHHHHhcCCCeeeC
Q 043164 286 SGTIVVKGLSQKTTEEDL------YQILAEWGPLRHVRVIKERNS-GVSRGFA--FIDFPSVGAARAMMDRIGDDGLVVD 356 (1049)
Q Consensus 286 s~~L~V~nLp~~~tee~L------~~~F~~~G~i~~v~i~~dk~t-g~srG~A--FVeF~~~e~A~~Al~~l~~ng~~i~ 356 (1049)
-.-+||-+||+.+-.+++ .++|.+||.|..|.|.+.... ..-.+.+ ||.|.+.++|.+||..+ +|..++
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~v--Dgs~~D 191 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEV--DGSLLD 191 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHh--cccccc
Confidence 356899999998766652 468999999988888764311 1122233 99999999999999999 999999
Q ss_pred CeeEEEeec
Q 043164 357 GRKLFFEYS 365 (1049)
Q Consensus 357 Gr~i~V~~A 365 (1049)
|+.|+..|-
T Consensus 192 Gr~lkatYG 200 (480)
T COG5175 192 GRVLKATYG 200 (480)
T ss_pred CceEeeecC
Confidence 999999883
No 173
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.14 E-value=0.0046 Score=68.05 Aligned_cols=77 Identities=21% Similarity=0.296 Sum_probs=64.8
Q ss_pred CCcceEEEeCCCccCcHHHHHHHhhccC--CeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEE
Q 043164 445 GPTHVLVVRGLDEYADEEMLRYEFSKHA--PIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILR 522 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLre~Fs~fG--~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~ 522 (1049)
+..-|+||+||-+.+|++||.+.+...| .|..+++..+..+|+++|||+|...+.....+.|+.|-...| .|..-.
T Consensus 78 Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~i--HGQ~P~ 155 (498)
T KOG4849|consen 78 GRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTI--HGQSPT 155 (498)
T ss_pred CceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhccccee--cCCCCe
Confidence 3456899999999999999999998877 467788888888999999999999998888899999888877 454433
Q ss_pred E
Q 043164 523 V 523 (1049)
Q Consensus 523 V 523 (1049)
|
T Consensus 156 V 156 (498)
T KOG4849|consen 156 V 156 (498)
T ss_pred e
Confidence 3
No 174
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.06 E-value=0.024 Score=66.21 Aligned_cols=67 Identities=21% Similarity=0.294 Sum_probs=62.2
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHHh-hcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHH
Q 043164 281 YAVAPSGTIVVKGLSQKTTEEDLYQILA-EWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDR 347 (1049)
Q Consensus 281 ~~~~ps~~L~V~nLp~~~tee~L~~~F~-~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~ 347 (1049)
....|.+|||||+||.-+|.++|..+|+ -||-|.-|-|=.|+.-+.++|-|=|.|.+...-.+||.+
T Consensus 365 q~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 365 QPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 4567889999999999999999999999 799999999999988899999999999999999999976
No 175
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.06 E-value=0.011 Score=63.19 Aligned_cols=77 Identities=21% Similarity=0.202 Sum_probs=61.8
Q ss_pred ceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhC--CCeeccCCeEEEEEE
Q 043164 448 HVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATN--GTTLEKNGQILRVAY 525 (1049)
Q Consensus 448 ~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~Ln--G~~~~i~Gr~L~V~~ 525 (1049)
..|+|.||...+..|.|.+.|..||+|....++.|- .++..|-++|.|...-.|.+|+..+. |.-+.+.++.+.|.-
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 369999999999999999999999999887777764 57788899999999999999998874 443333455555443
No 176
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=96.05 E-value=0.01 Score=69.47 Aligned_cols=8 Identities=63% Similarity=1.215 Sum_probs=3.9
Q ss_pred CCCcccCc
Q 043164 26 EPNFRVGG 33 (1049)
Q Consensus 26 ~~~~~~~~ 33 (1049)
+|.|+.++
T Consensus 389 epp~~~q~ 396 (757)
T KOG4368|consen 389 EPPFRMQG 396 (757)
T ss_pred CCchhhcC
Confidence 45555443
No 177
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=95.94 E-value=0.016 Score=48.06 Aligned_cols=52 Identities=27% Similarity=0.408 Sum_probs=42.5
Q ss_pred ceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHH
Q 043164 448 HVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKAL 506 (1049)
Q Consensus 448 ~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl 506 (1049)
+.|.|.+.++...+. |...|..||.|..+.+... .-++||.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 478899998877644 5568889999999998732 239999999999999985
No 178
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=95.92 E-value=0.00068 Score=82.45 Aligned_cols=162 Identities=16% Similarity=0.106 Sum_probs=113.9
Q ss_pred ceEEEcCCCCCCCHH-HHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEeec
Q 043164 287 GTIVVKGLSQKTTEE-DLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYS 365 (1049)
Q Consensus 287 ~~L~V~nLp~~~tee-~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~A 365 (1049)
..+++.++.+..... .++..|..+|.|..|++..-...-...-++++++.....+..|... .+-.+.++.+.|..+
T Consensus 572 ~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~p---a~~~~a~~~~av~~a 648 (881)
T KOG0128|consen 572 REKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVP---AGGALANRSAAVGLA 648 (881)
T ss_pred hhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcccc---cccccCCccccCCCC
Confidence 456777777776555 5778899999999999877322222222788999988888888754 455555665555443
Q ss_pred CCCCCCCCCCCCccccccccccCCCCCCCCccccccccccccccccccccccCCCCCCCCcccCCCCCCCCCCCCCCCCC
Q 043164 366 SKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKGSDTG 445 (1049)
Q Consensus 366 ~~p~~~~~~~~~~~~~~~~~~~~~r~~~p~dw~~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 445 (1049)
..... ..+| +.. .....
T Consensus 649 d~~~~---------------------------------~~~~------------kvs------------------~n~~R 665 (881)
T KOG0128|consen 649 DAEEK---------------------------------EENF------------KVS------------------PNEIR 665 (881)
T ss_pred Cchhh---------------------------------hhcc------------CcC------------------chHHH
Confidence 11000 0000 000 00001
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCee
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTL 514 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~ 514 (1049)
...++||+||+..+.+++|...|..+|.|..+.|..-.+.+.-+|+|||+|..++.+.+||....+..+
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~ 734 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFF 734 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhh
Confidence 235799999999999999999999999998887776666788999999999999999999987777766
No 179
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=95.85 E-value=0.016 Score=48.06 Aligned_cols=52 Identities=21% Similarity=0.390 Sum_probs=42.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHH
Q 043164 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMM 345 (1049)
Q Consensus 287 ~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al 345 (1049)
+.|-|.+.++...+. |...|..||+|.++.+....+ +.||.|.+..+|.+||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~~~------~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPESTN------WMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCCCc------EEEEEECCHHHHHhhC
Confidence 568889988776654 555888999999998874333 9999999999999986
No 180
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.84 E-value=0.006 Score=65.20 Aligned_cols=74 Identities=19% Similarity=0.357 Sum_probs=62.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCC--------CCccce----EEEEcCCHHHHHHHHHHhcCCC
Q 043164 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNS--------GVSRGF----AFIDFPSVGAARAMMDRIGDDG 352 (1049)
Q Consensus 285 ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~t--------g~srG~----AFVeF~~~e~A~~Al~~l~~ng 352 (1049)
....||+.+||+.+...-|+++|+.||.|-.|.|.....+ |.++++ +.|+|.+...|..+...| |+
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~L--nn 150 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELL--NN 150 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHh--CC
Confidence 3468999999999999999999999999999999887655 333333 889999999999999999 88
Q ss_pred eeeCCeeE
Q 043164 353 LVVDGRKL 360 (1049)
Q Consensus 353 ~~i~Gr~i 360 (1049)
..|+|+.-
T Consensus 151 ~~Iggkk~ 158 (278)
T KOG3152|consen 151 TPIGGKKK 158 (278)
T ss_pred CccCCCCC
Confidence 88888643
No 181
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.61 E-value=0.0057 Score=65.56 Aligned_cols=64 Identities=27% Similarity=0.323 Sum_probs=53.7
Q ss_pred HHHHHHhh-ccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEEeec
Q 043164 462 EMLRYEFS-KHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYAKS 528 (1049)
Q Consensus 462 edLre~Fs-~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~Ak~ 528 (1049)
|+|..+|+ +||.|+++.|-.+. .-.-+|-+||.|...++|++|++.|||.+| +|++|...++.-
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~--~G~pi~ae~~pv 147 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWY--NGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccc--cCCcceeeecCc
Confidence 56666777 99999999777653 334689999999999999999999999999 799999998543
No 182
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.56 E-value=0.026 Score=64.98 Aligned_cols=71 Identities=17% Similarity=0.257 Sum_probs=55.3
Q ss_pred eEEEeCCCccC-cHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEEee
Q 043164 449 VLVVRGLDEYA-DEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYAK 527 (1049)
Q Consensus 449 ~LfV~NLp~~~-teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~Ak 527 (1049)
.|-|.-.++.+ +-++|...|.+||.|..|.|--.. --|.|+|.+..+|-.|. +.++..| +++.|+|.|-+
T Consensus 374 ~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~------~~a~vTF~t~aeag~a~-~s~~avl--nnr~iKl~whn 444 (526)
T KOG2135|consen 374 PLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS------LHAVVTFKTRAEAGEAY-ASHGAVL--NNRFIKLFWHN 444 (526)
T ss_pred hhhhhccCCCCchHhhhhhhhhhcCccccccccCch------hhheeeeeccccccchh-cccccee--cCceeEEEEec
Confidence 44555555553 568899999999999999886542 27899999999986664 3678888 89999999976
Q ss_pred c
Q 043164 528 S 528 (1049)
Q Consensus 528 ~ 528 (1049)
+
T Consensus 445 p 445 (526)
T KOG2135|consen 445 P 445 (526)
T ss_pred C
Confidence 6
No 183
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=95.56 E-value=0.02 Score=67.02 Aligned_cols=77 Identities=18% Similarity=0.404 Sum_probs=61.6
Q ss_pred CCceEEEcCCCCCC--CHH----HHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeC-C
Q 043164 285 PSGTIVVKGLSQKT--TEE----DLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVD-G 357 (1049)
Q Consensus 285 ps~~L~V~nLp~~~--tee----~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~-G 357 (1049)
-...|+|-|+|.-- .-+ -|..+|+++|+|+.+.++.+..+| ++||.|++|.+..+|..|++.| ||..|+ +
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l--~G~~ldkn 133 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSL--NGKRLDKN 133 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhc--ccceeccc
Confidence 34689999998632 222 245688999999999999886655 9999999999999999999999 999887 4
Q ss_pred eeEEEee
Q 043164 358 RKLFFEY 364 (1049)
Q Consensus 358 r~i~V~~ 364 (1049)
+++.|..
T Consensus 134 Htf~v~~ 140 (698)
T KOG2314|consen 134 HTFFVRL 140 (698)
T ss_pred ceEEeeh
Confidence 5566543
No 184
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.50 E-value=0.011 Score=69.34 Aligned_cols=79 Identities=16% Similarity=0.293 Sum_probs=64.4
Q ss_pred CCCcceEEEeCCCccCcHHHHHHHhhcc-CCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeec-cCCeEE
Q 043164 444 TGPTHVLVVRGLDEYADEEMLRYEFSKH-APIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLE-KNGQIL 521 (1049)
Q Consensus 444 ~~ps~~LfV~NLp~~~teedLre~Fs~f-G~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~-i~Gr~L 521 (1049)
..++++|+|.||--..|.-+|+.++..- |.|..+.|-+ -+..|||.|.+.++|...+.+|||..+. .|.+.|
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDk------IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDK------IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHHHHHH------hhcceeEecccHHHHHHHHHHHhccccCCCCCcee
Confidence 3468999999999999999999999955 4566653322 3458999999999999999999998664 577999
Q ss_pred EEEEeec
Q 043164 522 RVAYAKS 528 (1049)
Q Consensus 522 ~V~~Ak~ 528 (1049)
.|.|+..
T Consensus 515 ~adf~~~ 521 (718)
T KOG2416|consen 515 IADFVRA 521 (718)
T ss_pred Eeeecch
Confidence 9999654
No 185
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.44 E-value=0.087 Score=49.65 Aligned_cols=79 Identities=18% Similarity=0.238 Sum_probs=51.8
Q ss_pred cceEEEeCCCccCcHHHHHHHhhccCCeeeEE-EeecC------CCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCe
Q 043164 447 THVLVVRGLDEYADEEMLRYEFSKHAPIKDLR-LVRDK------FTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQ 519 (1049)
Q Consensus 447 s~~LfV~NLp~~~teedLre~Fs~fG~I~~v~-I~rD~------~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr 519 (1049)
...|.|=+.|+.. ...|.++|++||.|.+.. +.++. ..........|+|.++.+|.+||. -||..|. +.-
T Consensus 6 ~~wVtVFGfp~~~-~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~-g~~ 82 (100)
T PF05172_consen 6 ETWVTVFGFPPSA-SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFS-GSL 82 (100)
T ss_dssp CCEEEEE---GGG-HHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEET-TCE
T ss_pred CeEEEEEccCHHH-HHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEc-CcE
Confidence 3568888888884 467889999999997775 11110 001123599999999999999997 5999884 446
Q ss_pred EEEEEEeec
Q 043164 520 ILRVAYAKS 528 (1049)
Q Consensus 520 ~L~V~~Ak~ 528 (1049)
.|-|.|+++
T Consensus 83 mvGV~~~~~ 91 (100)
T PF05172_consen 83 MVGVKPCDP 91 (100)
T ss_dssp EEEEEE-HH
T ss_pred EEEEEEcHH
Confidence 777888754
No 186
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=95.24 E-value=0.016 Score=66.03 Aligned_cols=65 Identities=28% Similarity=0.490 Sum_probs=55.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeec---CCC--CCc--------cceEEEEcCCHHHHHHHHHHh
Q 043164 284 APSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKE---RNS--GVS--------RGFAFIDFPSVGAARAMMDRI 348 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~d---k~t--g~s--------rG~AFVeF~~~e~A~~Al~~l 348 (1049)
-++++|.+-|||.+-..+.|.+||..+|.|..|+|.+- +.. +.. +-+|||+|...+.|.+|.+.|
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 58899999999999999999999999999999999874 222 222 336999999999999999987
No 187
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.21 E-value=0.011 Score=63.34 Aligned_cols=68 Identities=21% Similarity=0.201 Sum_probs=59.0
Q ss_pred cceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCC--------Ccee----eEEEEEeCCHHHHHHHHHHhCCCee
Q 043164 447 THVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFT--------HVSR----GFAFLHFHSVEDASKALEATNGTTL 514 (1049)
Q Consensus 447 s~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~t--------g~Sr----GfAFVeF~s~e~A~kAl~~LnG~~~ 514 (1049)
+-+|||++||+..+..-|+++|+.||.|-.|+|.....+ |.+. --++|+|.+-..|......|||.+|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 468999999999999999999999999999999876544 2222 3568999999999999999999999
No 188
>KOG3263 consensus Nucleic acid binding protein [General function prediction only]
Probab=95.18 E-value=0.004 Score=62.27 Aligned_cols=7 Identities=71% Similarity=0.881 Sum_probs=3.0
Q ss_pred CCCCCCC
Q 043164 238 RPRSRSP 244 (1049)
Q Consensus 238 R~RsRS~ 244 (1049)
++++.||
T Consensus 83 r~rs~Sp 89 (196)
T KOG3263|consen 83 RRRSVSP 89 (196)
T ss_pred hhcccCC
Confidence 3444444
No 189
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=95.18 E-value=0.025 Score=64.40 Aligned_cols=68 Identities=25% Similarity=0.275 Sum_probs=57.2
Q ss_pred CCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeec---CCCCc----------eeeEEEEEeCCHHHHHHHHHHhCC
Q 043164 445 GPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRD---KFTHV----------SRGFAFLHFHSVEDASKALEATNG 511 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD---~~tg~----------SrGfAFVeF~s~e~A~kAl~~LnG 511 (1049)
.++.+|++-|||.+-..+-|.++|+.+|.|+.|+|.+. +.... .+-+|||+|...+.|.+|.+.|+.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 36889999999999888999999999999999999986 22211 144799999999999999998864
Q ss_pred C
Q 043164 512 T 512 (1049)
Q Consensus 512 ~ 512 (1049)
.
T Consensus 309 e 309 (484)
T KOG1855|consen 309 E 309 (484)
T ss_pred h
Confidence 3
No 190
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=94.22 E-value=0.042 Score=64.81 Aligned_cols=75 Identities=17% Similarity=0.306 Sum_probs=63.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhh-cCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeee---CCe
Q 043164 283 VAPSGTIVVKGLSQKTTEEDLYQILAE-WGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVV---DGR 358 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~~~tee~L~~~F~~-~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i---~Gr 358 (1049)
..+++.|+|.||-.-+|.-+|++++.. .|.|..+.|=+- |-.|||.|.+.++|...+.+| ||+.+ +++
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkI------KShCyV~yss~eEA~atr~Al--hnV~WP~sNPK 512 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKI------KSHCYVSYSSVEEAAATREAL--HNVQWPPSNPK 512 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHh------hcceeEecccHHHHHHHHHHH--hccccCCCCCc
Confidence 356789999999999999999999995 566777644332 348999999999999999999 99877 578
Q ss_pred eEEEeec
Q 043164 359 KLFFEYS 365 (1049)
Q Consensus 359 ~i~V~~A 365 (1049)
.|.|.|.
T Consensus 513 ~L~adf~ 519 (718)
T KOG2416|consen 513 HLIADFV 519 (718)
T ss_pred eeEeeec
Confidence 9999996
No 191
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=94.20 E-value=0.07 Score=59.22 Aligned_cols=10 Identities=30% Similarity=0.461 Sum_probs=4.4
Q ss_pred CCCCCCCCcc
Q 043164 61 YPPPPVGLWP 70 (1049)
Q Consensus 61 ~~~~~~~~~~ 70 (1049)
-|.|--+.|.
T Consensus 199 IpLp~~P~Wf 208 (367)
T KOG0835|consen 199 IPLPFQPHWF 208 (367)
T ss_pred CCCCCCccHH
Confidence 4444344443
No 192
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=94.17 E-value=0.18 Score=47.54 Aligned_cols=76 Identities=11% Similarity=0.231 Sum_probs=50.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCeeEEE-EeecCC------CCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCe
Q 043164 286 SGTIVVKGLSQKTTEEDLYQILAEWGPLRHVR-VIKERN------SGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGR 358 (1049)
Q Consensus 286 s~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~-i~~dk~------tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr 358 (1049)
...|.|-+.|+. ....|.+.|+.||.|.+.. +.++.. ........-|.|.++.+|.+||.. ||..|.|.
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~---NG~i~~g~ 81 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK---NGTIFSGS 81 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT---TTEEETTC
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh---CCeEEcCc
Confidence 356889999988 5667888999999997664 111100 011233899999999999999965 99999986
Q ss_pred e-EEEeec
Q 043164 359 K-LFFEYS 365 (1049)
Q Consensus 359 ~-i~V~~A 365 (1049)
. +-|.++
T Consensus 82 ~mvGV~~~ 89 (100)
T PF05172_consen 82 LMVGVKPC 89 (100)
T ss_dssp EEEEEEE-
T ss_pred EEEEEEEc
Confidence 4 446664
No 193
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=93.98 E-value=0.064 Score=66.25 Aligned_cols=80 Identities=24% Similarity=0.420 Sum_probs=69.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCC--ee
Q 043164 282 AVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDG--RK 359 (1049)
Q Consensus 282 ~~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~G--r~ 359 (1049)
...+++.|||++|...+....|...|..||+|..|.+-+. .+ ||+|.|.+...|+.|+..| -|..|+| +.
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg----q~--yayi~yes~~~aq~a~~~~--rgap~G~P~~r 522 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG----QP--YAYIQYESPPAAQAATHDM--RGAPLGGPPRR 522 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC----Cc--ceeeecccCccchhhHHHH--hcCcCCCCCcc
Confidence 4566789999999999999999999999999998887543 22 9999999999999999999 8888875 77
Q ss_pred EEEeecCCCC
Q 043164 360 LFFEYSSKPT 369 (1049)
Q Consensus 360 i~V~~A~~p~ 369 (1049)
|.|.|+..+.
T Consensus 523 ~rvdla~~~~ 532 (975)
T KOG0112|consen 523 LRVDLASPPG 532 (975)
T ss_pred cccccccCCC
Confidence 9999985543
No 194
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.77 E-value=0.23 Score=49.01 Aligned_cols=71 Identities=25% Similarity=0.386 Sum_probs=54.0
Q ss_pred CcceEEEeCCC----ccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEE
Q 043164 446 PTHVLVVRGLD----EYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQIL 521 (1049)
Q Consensus 446 ps~~LfV~NLp----~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L 521 (1049)
|-.+|+|+=|. +.-+-..|...++.||+|..|.+.- +--|.|.|.+...|-+|+.+++...- |..+
T Consensus 85 PMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s~~p---gtm~ 154 (166)
T PF15023_consen 85 PMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQSRAP---GTMF 154 (166)
T ss_pred CceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcCCCC---CceE
Confidence 44577776544 4444455777889999999998763 34899999999999999999987544 7788
Q ss_pred EEEEe
Q 043164 522 RVAYA 526 (1049)
Q Consensus 522 ~V~~A 526 (1049)
.++|-
T Consensus 155 qCsWq 159 (166)
T PF15023_consen 155 QCSWQ 159 (166)
T ss_pred Eeecc
Confidence 88773
No 195
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=93.67 E-value=0.24 Score=49.51 Aligned_cols=72 Identities=28% Similarity=0.463 Sum_probs=53.0
Q ss_pred CCCCCceEEEcCCC-----CCCCHH----HHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCC
Q 043164 282 AVAPSGTIVVKGLS-----QKTTEE----DLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDG 352 (1049)
Q Consensus 282 ~~~ps~~L~V~nLp-----~~~tee----~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng 352 (1049)
..+|..||.|.=+. .....+ +|.+.|..||.+.-|+++-+ --+|.|.+-+.|.+|+. | +|
T Consensus 23 ~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~--dg 91 (146)
T PF08952_consen 23 QGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-L--DG 91 (146)
T ss_dssp ---TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-G--CC
T ss_pred cCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-c--CC
Confidence 34667788887666 122222 56777888999988888765 57999999999999995 4 99
Q ss_pred eeeCCeeEEEee
Q 043164 353 LVVDGRKLFFEY 364 (1049)
Q Consensus 353 ~~i~Gr~i~V~~ 364 (1049)
+.|+|+.|+|..
T Consensus 92 ~~v~g~~l~i~L 103 (146)
T PF08952_consen 92 IQVNGRTLKIRL 103 (146)
T ss_dssp SEETTEEEEEEE
T ss_pred cEECCEEEEEEe
Confidence 999999999987
No 196
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=92.86 E-value=0.058 Score=58.11 Aligned_cols=61 Identities=21% Similarity=0.389 Sum_probs=50.5
Q ss_pred HHHHHHh-hcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEeec
Q 043164 302 DLYQILA-EWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYS 365 (1049)
Q Consensus 302 ~L~~~F~-~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~A 365 (1049)
+|...|+ +||+|..+.|-.+ ..-.-+|-+||.|...++|.+|++.| |+-+|.|++|..+++
T Consensus 84 d~f~E~~~kygEiee~~Vc~N-l~~hl~GNVYV~f~~Ee~ae~a~~~l--nnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDN-LGDHLVGNVYVKFRSEEDAEAALEDL--NNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcc-cchhhhhhhhhhcccHHHHHHHHHHH--cCccccCCcceeeec
Confidence 3333344 8999999877665 34456889999999999999999999 999999999999985
No 197
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=92.86 E-value=0.55 Score=47.07 Aligned_cols=72 Identities=24% Similarity=0.365 Sum_probs=50.9
Q ss_pred CcceEEEeCCCc-----c-CcH---HHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeecc
Q 043164 446 PTHVLVVRGLDE-----Y-ADE---EMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEK 516 (1049)
Q Consensus 446 ps~~LfV~NLp~-----~-~te---edLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i 516 (1049)
|-.+|.|.=+.+ . ..+ .+|.+.|..||.+.-|+++.+ .-+|+|.+-+.|.+|+. |+|..+
T Consensus 26 pDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v-- 94 (146)
T PF08952_consen 26 PDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQV-- 94 (146)
T ss_dssp TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEE--
T ss_pred CCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEE--
Confidence 345676655541 1 222 357788999999888887754 68999999999999986 899999
Q ss_pred CCeEEEEEEeec
Q 043164 517 NGQILRVAYAKS 528 (1049)
Q Consensus 517 ~Gr~L~V~~Ak~ 528 (1049)
+|+.|+|..-.+
T Consensus 95 ~g~~l~i~LKtp 106 (146)
T PF08952_consen 95 NGRTLKIRLKTP 106 (146)
T ss_dssp TTEEEEEEE---
T ss_pred CCEEEEEEeCCc
Confidence 899999998544
No 198
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=92.42 E-value=0.49 Score=42.75 Aligned_cols=56 Identities=18% Similarity=0.245 Sum_probs=43.6
Q ss_pred cceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCC
Q 043164 447 THVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNG 511 (1049)
Q Consensus 447 s~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG 511 (1049)
.++.+|. .|..+-..||.++|++||.| .|..+.| .-|||.....+.|..|+..+.-
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~d-------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWIND-------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCE-EEEEECT-------TEEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcC-------CcEEEEeecHHHHHHHHHHhcc
Confidence 4677786 99999999999999999998 4555555 3899999999999999998863
No 199
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=92.40 E-value=0.24 Score=51.68 Aligned_cols=69 Identities=17% Similarity=0.192 Sum_probs=46.8
Q ss_pred cceEEEeCCCccCcHHHHHHHhhc-cCCe---eeEE--EeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeec
Q 043164 447 THVLVVRGLDEYADEEMLRYEFSK-HAPI---KDLR--LVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLE 515 (1049)
Q Consensus 447 s~~LfV~NLp~~~teedLre~Fs~-fG~I---~~v~--I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~ 515 (1049)
..+|+|++||+.+|++++.+.+++ ++.. ..+. +...........-|||.|.+.+++..-+..++|..|.
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~ 81 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFV 81 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEE
Confidence 358999999999999999998887 6654 3333 2111111123457999999999999999999998774
No 200
>KOG2138 consensus Predicted RNA binding protein, contains G-patch domain [RNA processing and modification]
Probab=91.94 E-value=0.076 Score=63.75 Aligned_cols=21 Identities=57% Similarity=1.260 Sum_probs=19.8
Q ss_pred CCcHHHHHHHhcCCCCCCCCC
Q 043164 973 ENNVGNRMLRSMGWHEGLGLG 993 (1049)
Q Consensus 973 ~~n~g~~ml~~mGw~~G~gLG 993 (1049)
...||.+||.+|||++|+|+|
T Consensus 147 s~sIgvrlLrsMGWr~GqgIg 167 (883)
T KOG2138|consen 147 SDSIGVRLLRSMGWREGQGIG 167 (883)
T ss_pred hhhHHHHHHHHhcCccCCCcC
Confidence 468999999999999999999
No 201
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=90.50 E-value=1 Score=38.60 Aligned_cols=54 Identities=24% Similarity=0.315 Sum_probs=44.1
Q ss_pred ceEEEeCCCccCcHHHHHHHhhcc---CCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHh
Q 043164 448 HVLVVRGLDEYADEEMLRYEFSKH---APIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT 509 (1049)
Q Consensus 448 ~~LfV~NLp~~~teedLre~Fs~f---G~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~L 509 (1049)
..|+|+++.. ++.++|+.+|..| .....|..+-|. -|-|.|.+.+.|.+||.+|
T Consensus 6 eavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 5799999965 6668899999998 134578888774 7889999999999999875
No 202
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=90.10 E-value=3.7 Score=39.50 Aligned_cols=80 Identities=19% Similarity=0.283 Sum_probs=59.0
Q ss_pred cceEEEeCCCccCcHHHHHHHhhccC-CeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeec-cCCeEEEEE
Q 043164 447 THVLVVRGLDEYADEEMLRYEFSKHA-PIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLE-KNGQILRVA 524 (1049)
Q Consensus 447 s~~LfV~NLp~~~teedLre~Fs~fG-~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~-i~Gr~L~V~ 524 (1049)
+..++|-..|..++-++|..+.+.+- .|..++|++|. ..++=.+.|+|.+.+.|..-...+||..|- +.....+|-
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE~Chvv 90 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNSLEPETCHVV 90 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCCCCCceeEEE
Confidence 45566666666677788877777765 47789999974 346778999999999999999999999873 233445555
Q ss_pred Eeec
Q 043164 525 YAKS 528 (1049)
Q Consensus 525 ~Ak~ 528 (1049)
|.+.
T Consensus 91 fV~~ 94 (110)
T PF07576_consen 91 FVKS 94 (110)
T ss_pred EEEE
Confidence 5544
No 203
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=89.41 E-value=0.41 Score=49.99 Aligned_cols=79 Identities=18% Similarity=0.235 Sum_probs=49.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhh-cCCe---eEEEEeec-CCCC-CccceEEEEcCCHHHHHHHHHHhcCCCeeeCC-
Q 043164 285 PSGTIVVKGLSQKTTEEDLYQILAE-WGPL---RHVRVIKE-RNSG-VSRGFAFIDFPSVGAARAMMDRIGDDGLVVDG- 357 (1049)
Q Consensus 285 ps~~L~V~nLp~~~tee~L~~~F~~-~G~i---~~v~i~~d-k~tg-~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~G- 357 (1049)
...+|.|++||+.+||+++.+.+.. ++.. ..+.-... .... ..-.-|||.|.+.+++...+..+ +|..|.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~--~g~~F~D~ 83 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRF--DGHVFVDS 83 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHC--TTEEEE-T
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhc--CCcEEECC
Confidence 3468999999999999999987776 5554 23331111 1111 12235999999999999999998 8866532
Q ss_pred ----eeEEEeec
Q 043164 358 ----RKLFFEYS 365 (1049)
Q Consensus 358 ----r~i~V~~A 365 (1049)
....|++|
T Consensus 84 kg~~~~~~VE~A 95 (176)
T PF03467_consen 84 KGNEYPAVVEFA 95 (176)
T ss_dssp TS-EEEEEEEE-
T ss_pred CCCCcceeEEEc
Confidence 34556665
No 204
>PF08648 DUF1777: Protein of unknown function (DUF1777); InterPro: IPR013957 This entry shows eukaryotic proteins of unknown function. Some of the proteins are putative nucleic acid binding proteins.
Probab=88.57 E-value=1.5 Score=45.97 Aligned_cols=6 Identities=33% Similarity=0.473 Sum_probs=2.6
Q ss_pred EEEEcC
Q 043164 331 AFIDFP 336 (1049)
Q Consensus 331 AFVeF~ 336 (1049)
+|..|.
T Consensus 134 Gf~gF~ 139 (180)
T PF08648_consen 134 GFGGFG 139 (180)
T ss_pred cccccc
Confidence 344444
No 205
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=87.74 E-value=1.8 Score=42.95 Aligned_cols=72 Identities=26% Similarity=0.380 Sum_probs=55.1
Q ss_pred CCCCceEEEcCCCCCC-CHHHH---HHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCe
Q 043164 283 VAPSGTIVVKGLSQKT-TEEDL---YQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGR 358 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~~~-tee~L---~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr 358 (1049)
.+|-.+|.|+=|..++ ..+|| ...++.||+|.+|.+.- +.-|.|.|.+...|.+|+.++ . ....|.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af--~-s~~pgt 152 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAF--Q-SRAPGT 152 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhh--c-CCCCCc
Confidence 4567899998887776 33444 45567899999998743 227999999999999999997 3 366778
Q ss_pred eEEEee
Q 043164 359 KLFFEY 364 (1049)
Q Consensus 359 ~i~V~~ 364 (1049)
.+.+.|
T Consensus 153 m~qCsW 158 (166)
T PF15023_consen 153 MFQCSW 158 (166)
T ss_pred eEEeec
Confidence 888777
No 206
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=87.61 E-value=0.34 Score=59.67 Aligned_cols=80 Identities=26% Similarity=0.314 Sum_probs=66.5
Q ss_pred CCCcceEEEeCCCc------------cCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCC
Q 043164 444 TGPTHVLVVRGLDE------------YADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNG 511 (1049)
Q Consensus 444 ~~ps~~LfV~NLp~------------~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG 511 (1049)
..|+++|-|.|+.+ .++-.-|..+|++||.|..+..+++-+ .|.|+|.+++.|..|+.+|+|
T Consensus 283 l~ptn~isisnv~plqp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~g 356 (1007)
T KOG4574|consen 283 LLPTNTISISNVFPLQPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQG 356 (1007)
T ss_pred ccccCcceecccccCcchhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcC
Confidence 34566666666544 455567889999999999999988753 899999999999999999999
Q ss_pred CeeccCCeEEEEEEeecC
Q 043164 512 TTLEKNGQILRVAYAKSI 529 (1049)
Q Consensus 512 ~~~~i~Gr~L~V~~Ak~k 529 (1049)
.++...|-+.+|.||+.-
T Consensus 357 kevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 357 KEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred CcccccCCceeEEecccc
Confidence 988778999999999875
No 207
>KOG0154 consensus RNA-binding protein RBM5 and related proteins, contain G-patch and RRM domains [General function prediction only]
Probab=87.19 E-value=0.69 Score=57.35 Aligned_cols=75 Identities=19% Similarity=0.215 Sum_probs=49.7
Q ss_pred EcCCCCCCCHHHHHHHHhhcC--CeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhc--CCCeeeCCeeEEEeec
Q 043164 291 VKGLSQKTTEEDLYQILAEWG--PLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIG--DDGLVVDGRKLFFEYS 365 (1049)
Q Consensus 291 V~nLp~~~tee~L~~~F~~~G--~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~--~ng~~i~Gr~i~V~~A 365 (1049)
+++|+...+++-+..-+..++ .|..+.+.....+-..++|+|..+...-++..-+.... .-...++++.+.+.++
T Consensus 2 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (573)
T KOG0154|consen 2 LRALDRLATEELILGELQPYASETVSRQSLEKDSSTEANRGFATRDPSSAIEAPNYLQLESSRNPPRAIDDKNSGVSLC 80 (573)
T ss_pred CcccccccchHHHhhhcchhhhhhhhHHHHHHHhhhhhccceEEecccchhhhhhHHHHHhccCcccccCCceeeeeec
Confidence 567777888887777777444 34555565555555568899999888888777665431 1234566777777775
No 208
>KOG1994 consensus Predicted RNA binding protein, contains G-patch and Zn-finger domains [RNA processing and modification]
Probab=86.25 E-value=0.29 Score=51.58 Aligned_cols=47 Identities=28% Similarity=0.501 Sum_probs=42.6
Q ss_pred CCcHHHHHHHhcCCCCCCCCCCCCCCcccceeEEEccCCccccccCC
Q 043164 973 ENNVGNRMLRSMGWHEGLGLGKDGSGMIEPVQAQAMDSRAGLGSQQK 1019 (1049)
Q Consensus 973 ~~n~g~~ml~~mGw~~G~gLG~~~~G~~~pi~~~~~~~~~GlG~~~~ 1019 (1049)
..-++.+||..|||++|.-||.+..-+-+||++..+.-..|+|+...
T Consensus 37 ~~r~e~k~~~n~~~~e~r~l~~~e~~~ee~~~~la~~~~~~i~~e~~ 83 (268)
T KOG1994|consen 37 IMRREYKMMENMGYKEGRTLGSNESALEEPIKVLANTKRRGIRAEKP 83 (268)
T ss_pred hhhhHHHHHHhcCCCCCCccchhhhhhcchHHHhhhhccccccccCc
Confidence 34567899999999999999999999999999999999999998754
No 209
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=86.00 E-value=2.9 Score=35.91 Aligned_cols=54 Identities=11% Similarity=0.234 Sum_probs=44.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhc---CCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHh
Q 043164 287 GTIVVKGLSQKTTEEDLYQILAEW---GPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRI 348 (1049)
Q Consensus 287 ~~L~V~nLp~~~tee~L~~~F~~~---G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l 348 (1049)
..|+|.|+. .++.++|+.+|..| .....|.-+-|. -|=|.|.+.+.|.+||..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 579999985 48889999999988 124578888774 5889999999999999764
No 210
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=85.88 E-value=1.6 Score=45.90 Aligned_cols=62 Identities=26% Similarity=0.307 Sum_probs=46.3
Q ss_pred cHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhC--CCeeccCCeEEEEEEeecC
Q 043164 460 DEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATN--GTTLEKNGQILRVAYAKSI 529 (1049)
Q Consensus 460 teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~Ln--G~~~~i~Gr~L~V~~Ak~k 529 (1049)
..+.|+.+|..|+.+..+.+++. -+-..|.|.+.+.|..|...|+ +..| .|..|+|.|+...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~--~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSF--NGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEE--TTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhccccccc--CCCceEEEEcccc
Confidence 44789999999999988877763 4578999999999999999999 8888 7999999998554
No 211
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=85.26 E-value=1 Score=54.54 Aligned_cols=72 Identities=14% Similarity=0.165 Sum_probs=60.7
Q ss_pred CCCCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEE
Q 043164 443 DTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILR 522 (1049)
Q Consensus 443 ~~~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~ 522 (1049)
...+..++||+||...+..+-++.++..+|.|..+..++ |+|++|..+..+..|+..|+-..+ +|..+.
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~--~~~kl~ 104 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNI--DDQKLI 104 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCC--Ccchhh
Confidence 345678999999999999999999999999998877654 999999999999999998876666 676666
Q ss_pred EEE
Q 043164 523 VAY 525 (1049)
Q Consensus 523 V~~ 525 (1049)
+.-
T Consensus 105 ~~~ 107 (668)
T KOG2253|consen 105 ENV 107 (668)
T ss_pred ccc
Confidence 554
No 212
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=85.20 E-value=0.57 Score=56.62 Aligned_cols=74 Identities=23% Similarity=0.232 Sum_probs=64.3
Q ss_pred ccCCCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCee
Q 043164 280 HYAVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRK 359 (1049)
Q Consensus 280 ~~~~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~ 359 (1049)
..+.++.-+|||+||...+..+-+..++..+|-|..+..+. |+|++|..+..+..|+..| +-+.++|..
T Consensus 34 ~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~--t~~~~~~~k 102 (668)
T KOG2253|consen 34 FQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLL--TELNIDDQK 102 (668)
T ss_pred ccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHh--cccCCCcch
Confidence 34556778999999999999999999999999987777654 9999999999999999998 888898888
Q ss_pred EEEee
Q 043164 360 LFFEY 364 (1049)
Q Consensus 360 i~V~~ 364 (1049)
+.+..
T Consensus 103 l~~~~ 107 (668)
T KOG2253|consen 103 LIENV 107 (668)
T ss_pred hhccc
Confidence 87654
No 213
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=85.13 E-value=0.47 Score=55.14 Aligned_cols=72 Identities=17% Similarity=0.234 Sum_probs=59.4
Q ss_pred CCceEEEcCCCCCC-CHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEe
Q 043164 285 PSGTIVVKGLSQKT-TEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFE 363 (1049)
Q Consensus 285 ps~~L~V~nLp~~~-tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~ 363 (1049)
..+.|-|.-+|+.+ |.++|...|.+||.|..|+|-.... -|.|+|.+..+|-.|... .+..|+++.|+|-
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~------~a~vTF~t~aeag~a~~s---~~avlnnr~iKl~ 441 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSL------HAVVTFKTRAEAGEAYAS---HGAVLNNRFIKLF 441 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCchh------hheeeeeccccccchhcc---ccceecCceeEEE
Confidence 34566677777765 7789999999999999999865422 799999999999887744 8999999999999
Q ss_pred ec
Q 043164 364 YS 365 (1049)
Q Consensus 364 ~A 365 (1049)
|-
T Consensus 442 wh 443 (526)
T KOG2135|consen 442 WH 443 (526)
T ss_pred Ee
Confidence 94
No 214
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=85.05 E-value=2.5 Score=38.39 Aligned_cols=52 Identities=19% Similarity=0.447 Sum_probs=40.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHh
Q 043164 288 TIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRI 348 (1049)
Q Consensus 288 ~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l 348 (1049)
..+|. .|......||.++|++||.| .|.-+-|. -|||...+.+.|..++..+
T Consensus 11 VFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~dT-------SAfV~l~~r~~~~~v~~~~ 62 (87)
T PF08675_consen 11 VFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWINDT-------SAFVALHNRDQAKVVMNTL 62 (87)
T ss_dssp EEEEE---TT--HHHHHHHCCCCCCE-EEEEECTT-------EEEEEECCCHHHHHHHHHH
T ss_pred EEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcCC-------cEEEEeecHHHHHHHHHHh
Confidence 44555 99999999999999999998 45555553 7999999999999999887
No 215
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=84.75 E-value=0.78 Score=52.46 Aligned_cols=74 Identities=23% Similarity=0.263 Sum_probs=58.4
Q ss_pred ceEEEeCCCccCcHHHHHHHhhccC-CeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEEe
Q 043164 448 HVLVVRGLDEYADEEMLRYEFSKHA-PIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYA 526 (1049)
Q Consensus 448 ~~LfV~NLp~~~teedLre~Fs~fG-~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~A 526 (1049)
+.||++||.+.++..+|..+|...- ++..-++++ .||+||.+.+..-|.+|++.++|..- +.|+.+.|.+.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k-------~gyafvd~pdq~wa~kaie~~sgk~e-lqGkr~e~~~s 73 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK-------SGYAFVDCPDQQWANKAIETLSGKVE-LQGKRQEVEHS 73 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee-------cceeeccCCchhhhhhhHHhhchhhh-hcCceeeccch
Confidence 4699999999999999999998642 122223333 47999999999999999999998632 38999999987
Q ss_pred ecC
Q 043164 527 KSI 529 (1049)
Q Consensus 527 k~k 529 (1049)
-++
T Consensus 74 v~k 76 (584)
T KOG2193|consen 74 VPK 76 (584)
T ss_pred hhH
Confidence 655
No 216
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=83.96 E-value=5.4 Score=38.39 Aligned_cols=67 Identities=16% Similarity=0.261 Sum_probs=48.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCC
Q 043164 287 GTIVVKGLSQKTTEEDLYQILAEWG-PLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDG 357 (1049)
Q Consensus 287 ~~L~V~nLp~~~tee~L~~~F~~~G-~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~G 357 (1049)
..+.+...|..++-++|..+.+.+- .|..++|++|... ++=.+.+.|.+.++|..+...+ ||..++.
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p--nrymVLikF~~~~~Ad~Fy~~f--NGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP--NRYMVLIKFRDQESADEFYEEF--NGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCC--ceEEEEEEECCHHHHHHHHHHh--CCCccCC
Confidence 3444545555556666766666664 5789999997432 4446999999999999999999 8887753
No 217
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=83.78 E-value=0.33 Score=54.40 Aligned_cols=80 Identities=16% Similarity=0.277 Sum_probs=60.9
Q ss_pred ceEEEeCCCccCcHHHHH---HHhhccCCeeeEEEeecCCCCc---eeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEE
Q 043164 448 HVLVVRGLDEYADEEMLR---YEFSKHAPIKDLRLVRDKFTHV---SRGFAFLHFHSVEDASKALEATNGTTLEKNGQIL 521 (1049)
Q Consensus 448 ~~LfV~NLp~~~teedLr---e~Fs~fG~I~~v~I~rD~~tg~---SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L 521 (1049)
+-+||-+|+..+..+.+. +.|.+||.|..|.+.++..... .-.-++|+|...++|..||...+|+.+ +|+.|
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~--dg~~l 155 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVD--DGRAL 155 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHh--hhhhh
Confidence 456777888776555543 5688899999998888652111 122479999999999999999999988 78888
Q ss_pred EEEEeecC
Q 043164 522 RVAYAKSI 529 (1049)
Q Consensus 522 ~V~~Ak~k 529 (1049)
++.|+..+
T Consensus 156 ka~~gttk 163 (327)
T KOG2068|consen 156 KASLGTTK 163 (327)
T ss_pred HHhhCCCc
Confidence 88887665
No 218
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=83.36 E-value=0.55 Score=52.71 Aligned_cols=77 Identities=25% Similarity=0.432 Sum_probs=59.7
Q ss_pred ceEEEcCCCCCCCHHHHH---HHHhhcCCeeEEEEeecCCCCCcc-c--eEEEEcCCHHHHHHHHHHhcCCCeeeCCeeE
Q 043164 287 GTIVVKGLSQKTTEEDLY---QILAEWGPLRHVRVIKERNSGVSR-G--FAFIDFPSVGAARAMMDRIGDDGLVVDGRKL 360 (1049)
Q Consensus 287 ~~L~V~nLp~~~tee~L~---~~F~~~G~i~~v~i~~dk~tg~sr-G--~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i 360 (1049)
.-+||-+|+..+..+.+. +.|.+||.|..|.+..+...-.+- + -++|.|...++|..||... +|+.++|+.|
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v--~g~~~dg~~l 155 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDV--DGFVDDGRAL 155 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHh--hhHHhhhhhh
Confidence 467888998876555443 468889999999988875211111 1 2899999999999999999 9999999998
Q ss_pred EEeec
Q 043164 361 FFEYS 365 (1049)
Q Consensus 361 ~V~~A 365 (1049)
+..+.
T Consensus 156 ka~~g 160 (327)
T KOG2068|consen 156 KASLG 160 (327)
T ss_pred HHhhC
Confidence 88774
No 219
>KOG2548 consensus SWAP mRNA splicing regulator [RNA processing and modification]
Probab=82.49 E-value=0.66 Score=54.35 Aligned_cols=7 Identities=43% Similarity=0.790 Sum_probs=3.4
Q ss_pred Ccccccc
Q 043164 32 GGSYDER 38 (1049)
Q Consensus 32 ~~~~~~~ 38 (1049)
|.||.|.
T Consensus 164 GfSYeds 170 (653)
T KOG2548|consen 164 GFSYEDS 170 (653)
T ss_pred eeeecCc
Confidence 4455543
No 220
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=81.58 E-value=3.5 Score=43.39 Aligned_cols=59 Identities=15% Similarity=0.246 Sum_probs=46.0
Q ss_pred CHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCC--CeeeCCeeEEEeec
Q 043164 299 TEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDD--GLVVDGRKLFFEYS 365 (1049)
Q Consensus 299 tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~n--g~~i~Gr~i~V~~A 365 (1049)
..+.|+++|..++++..+.+++. -+-..|.|.+.++|..|...| + +..|.|..|+|-|+
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l--~~~~~~~~g~~l~~yf~ 68 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLL--HWDGTSFNGKRLRVYFG 68 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTS--T--TSEETTEE-EEE--
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHh--cccccccCCCceEEEEc
Confidence 45789999999999988887764 236899999999999999999 7 89999999999996
No 221
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=80.50 E-value=7.7 Score=34.40 Aligned_cols=66 Identities=26% Similarity=0.376 Sum_probs=38.8
Q ss_pred eEEEeCCC--ccCcHHHHHHHhhccCC-----eeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEE
Q 043164 449 VLVVRGLD--EYADEEMLRYEFSKHAP-----IKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQIL 521 (1049)
Q Consensus 449 ~LfV~NLp--~~~teedLre~Fs~fG~-----I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L 521 (1049)
+||| |+- ..++..+|..++...+. |-.|.|... |+||+-.. +.|..++..|++..+ .|+.|
T Consensus 2 rl~i-n~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~-~~a~~v~~~l~~~~~--~gk~v 69 (74)
T PF03880_consen 2 RLFI-NVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPE-EVAEKVLEALNGKKI--KGKKV 69 (74)
T ss_dssp EEEE-S-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-T-T-HHHHHHHHTT--S--SS---
T ss_pred EEEE-EcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECH-HHHHHHHHHhcCCCC--CCeeE
Confidence 4555 453 34788888888887654 556777653 99999876 578999999999988 69999
Q ss_pred EEEEe
Q 043164 522 RVAYA 526 (1049)
Q Consensus 522 ~V~~A 526 (1049)
+|..|
T Consensus 70 ~ve~A 74 (74)
T PF03880_consen 70 RVERA 74 (74)
T ss_dssp -EEE-
T ss_pred EEEEC
Confidence 99864
No 222
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=79.68 E-value=6.4 Score=43.71 Aligned_cols=73 Identities=18% Similarity=0.213 Sum_probs=54.9
Q ss_pred ceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEEee
Q 043164 448 HVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYAK 527 (1049)
Q Consensus 448 ~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~Ak 527 (1049)
..|.|-++++.-. ..|..+|++||.|+...... + --+.+|.|.+.-+|.+||.. ||+.|. +...|-|.-|.
T Consensus 198 ~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~---n---gNwMhirYssr~~A~KALsk-ng~ii~-g~vmiGVkpCt 268 (350)
T KOG4285|consen 198 TWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPS---N---GNWMHIRYSSRTHAQKALSK-NGTIID-GDVMIGVKPCT 268 (350)
T ss_pred ceEEEeccCccch-hHHHHHHHhhCeeeeeecCC---C---CceEEEEecchhHHHHhhhh-cCeeec-cceEEeeeecC
Confidence 4677777776543 46788999999997765542 2 23999999999999999984 888884 55666777776
Q ss_pred cC
Q 043164 528 SI 529 (1049)
Q Consensus 528 ~k 529 (1049)
.+
T Consensus 269 Dk 270 (350)
T KOG4285|consen 269 DK 270 (350)
T ss_pred CH
Confidence 65
No 223
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=79.15 E-value=6.4 Score=45.94 Aligned_cols=79 Identities=22% Similarity=0.362 Sum_probs=63.3
Q ss_pred cceEEEeCCCccCcHHHHHHHhhccC-CeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeec-cCCeEEEEE
Q 043164 447 THVLVVRGLDEYADEEMLRYEFSKHA-PIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLE-KNGQILRVA 524 (1049)
Q Consensus 447 s~~LfV~NLp~~~teedLre~Fs~fG-~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~-i~Gr~L~V~ 524 (1049)
+..|+|-.+|..++.-||..++..|- .|.+|+|++|.. .++=.+.|.|.+..+|..-.+.+||..|- +.--..+|-
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn~le~e~Chll 151 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFNSLEPEVCHLL 151 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCCCCCccceeEE
Confidence 67899999999999999999999876 489999999742 24457899999999999999999999873 233344555
Q ss_pred Eee
Q 043164 525 YAK 527 (1049)
Q Consensus 525 ~Ak 527 (1049)
|+.
T Consensus 152 ~V~ 154 (493)
T KOG0804|consen 152 YVD 154 (493)
T ss_pred EEE
Confidence 543
No 224
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=78.97 E-value=4.4 Score=47.27 Aligned_cols=70 Identities=16% Similarity=0.336 Sum_probs=59.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCC
Q 043164 284 APSGTIVVKGLSQKTTEEDLYQILAEWG-PLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDG 357 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~~~F~~~G-~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~G 357 (1049)
.++..|+|-.+|..+|-.||..|+..|- .|.+|+|++|...+ +=.++|.|.+.++|..+.+.+ ||..|..
T Consensus 72 ~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pn--rymvLIkFr~q~da~~Fy~ef--NGk~Fn~ 142 (493)
T KOG0804|consen 72 SSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPN--RYMVLIKFRDQADADTFYEEF--NGKQFNS 142 (493)
T ss_pred CCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCc--eEEEEEEeccchhHHHHHHHc--CCCcCCC
Confidence 3378999999999999999999999875 47899999974432 335999999999999999999 8887753
No 225
>KOG1847 consensus mRNA splicing factor [RNA processing and modification]
Probab=77.26 E-value=1.8 Score=51.96 Aligned_cols=13 Identities=0% Similarity=0.077 Sum_probs=6.0
Q ss_pred eEEEcCCCCCCCH
Q 043164 288 TIVVKGLSQKTTE 300 (1049)
Q Consensus 288 ~L~V~nLp~~~te 300 (1049)
+-|+.|-|..|+.
T Consensus 847 ~~~~q~~~~qvs~ 859 (878)
T KOG1847|consen 847 IPYLQNEPSQVSD 859 (878)
T ss_pred ccccccchhhhHH
Confidence 3344454444443
No 226
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=77.20 E-value=3.3 Score=49.27 Aligned_cols=73 Identities=10% Similarity=0.156 Sum_probs=59.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhh--cCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEE
Q 043164 285 PSGTIVVKGLSQKTTEEDLYQILAE--WGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFF 362 (1049)
Q Consensus 285 ps~~L~V~nLp~~~tee~L~~~F~~--~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V 362 (1049)
.-+.|+|+-||..+-+++|+.||.. +-.+++|.+..+- -=||.|.+..||+.|.+.|...-..|.|++|..
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 3468899999999999999999974 5677888887653 359999999999999999866666788988865
Q ss_pred ee
Q 043164 363 EY 364 (1049)
Q Consensus 363 ~~ 364 (1049)
..
T Consensus 247 RI 248 (684)
T KOG2591|consen 247 RI 248 (684)
T ss_pred hh
Confidence 43
No 227
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=74.11 E-value=3.8 Score=48.75 Aligned_cols=70 Identities=14% Similarity=0.220 Sum_probs=51.7
Q ss_pred cceEEEeCCCccCcHHHHHHHhhc--cCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEE
Q 043164 447 THVLVVRGLDEYADEEMLRYEFSK--HAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRV 523 (1049)
Q Consensus 447 s~~LfV~NLp~~~teedLre~Fs~--fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V 523 (1049)
-+.|+|+.||..+-+|+|+-+|.. +-.+..|.+-.+. -=||+|.+..+|++|...|.-..-.+.|+.|..
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 467889999999999999999986 5567777665432 359999999999999988753221124555543
No 228
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=73.63 E-value=11 Score=33.52 Aligned_cols=59 Identities=17% Similarity=0.433 Sum_probs=36.4
Q ss_pred CCCCHHHHHHHHhhcCC-----eeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEeec
Q 043164 296 QKTTEEDLYQILAEWGP-----LRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYS 365 (1049)
Q Consensus 296 ~~~tee~L~~~F~~~G~-----i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~A 365 (1049)
..++..+|..+|...+. |-.|.|..+ |+||+-... .|..+|..| ++..+.|+.|.|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l--~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEAL--NGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHH--TT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHh--cCCCCCCeeEEEEEC
Confidence 35788899999976643 557777654 999998765 788899999 999999999999763
No 229
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=72.20 E-value=39 Score=37.74 Aligned_cols=80 Identities=10% Similarity=0.274 Sum_probs=55.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCC-------CCCccceEEEEcCCHHHHHHHHH----HhcCCCee
Q 043164 286 SGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERN-------SGVSRGFAFIDFPSVGAARAMMD----RIGDDGLV 354 (1049)
Q Consensus 286 s~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~-------tg~srG~AFVeF~~~e~A~~Al~----~l~~ng~~ 354 (1049)
++.|.+.||...++--.+...|-+||+|+.|.|+.+.. .-...--..+-|-+.+.+..... .|+.=...
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 45688999999999999999999999999999998751 11122367888888887654432 22111234
Q ss_pred eCCeeEEEeec
Q 043164 355 VDGRKLFFEYS 365 (1049)
Q Consensus 355 i~Gr~i~V~~A 365 (1049)
+....|.|.|.
T Consensus 95 L~S~~L~lsFV 105 (309)
T PF10567_consen 95 LKSESLTLSFV 105 (309)
T ss_pred cCCcceeEEEE
Confidence 55666776663
No 230
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=72.10 E-value=13 Score=32.36 Aligned_cols=55 Identities=24% Similarity=0.329 Sum_probs=43.6
Q ss_pred CCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEE
Q 043164 297 KTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFF 362 (1049)
Q Consensus 297 ~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V 362 (1049)
.++-++|+..|..|+. .+|..|+ || | ||.|.+..+|.++.... +|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~-tG----f-YIvF~~~~Ea~rC~~~~--~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDR-TG----F-YIVFNDSKEAERCFRAE--DGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecC-CE----E-EEEECChHHHHHHHHhc--CCCEEEEEEEEe
Confidence 4788999999999865 3444553 44 4 89999999999999987 898888877765
No 231
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=71.83 E-value=6.1 Score=43.86 Aligned_cols=71 Identities=14% Similarity=0.264 Sum_probs=53.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCee-EEEee
Q 043164 286 SGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRK-LFFEY 364 (1049)
Q Consensus 286 s~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~-i~V~~ 364 (1049)
..-|-|-++|+..+ .-|..+|+.||.|++.....+ |. +-+|.|.+.-+|.+||.. ||..|+|.. |-|..
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~n---gN---wMhirYssr~~A~KALsk---ng~ii~g~vmiGVkp 266 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPSN---GN---WMHIRYSSRTHAQKALSK---NGTIIDGDVMIGVKP 266 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecCCC---Cc---eEEEEecchhHHHHhhhh---cCeeeccceEEeeee
Confidence 34567778877644 457788999999977665532 22 999999999999999966 899998854 45655
Q ss_pred cC
Q 043164 365 SS 366 (1049)
Q Consensus 365 A~ 366 (1049)
|.
T Consensus 267 Ct 268 (350)
T KOG4285|consen 267 CT 268 (350)
T ss_pred cC
Confidence 53
No 232
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=67.40 E-value=4.9 Score=37.04 Aligned_cols=33 Identities=15% Similarity=0.287 Sum_probs=27.3
Q ss_pred EEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEee
Q 043164 331 AFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEY 364 (1049)
Q Consensus 331 AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~ 364 (1049)
|+|.|....-|..-+.. +.+.+.+++..+.|.-
T Consensus 1 AlITF~e~~VA~~i~~~-~~~~v~l~~~~~~V~v 33 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKK-KKHPVPLEDCCVRVKV 33 (88)
T ss_pred CEEEeCcHHHHHHHHhC-CEEEEEECCEEEEEEE
Confidence 68999999999999965 5677788888887765
No 233
>KOG4198 consensus RNA-binding Ran Zn-finger protein and related proteins [General function prediction only]
Probab=67.06 E-value=3.1 Score=46.20 Aligned_cols=35 Identities=37% Similarity=0.790 Sum_probs=30.6
Q ss_pred CCCCCCccccccccccccccccccccccCCCCCCC
Q 043164 390 KSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDA 424 (1049)
Q Consensus 390 r~~~p~dw~~~~~~~~n~~~r~~~~~~~~~~~~~~ 424 (1049)
+.-.+.||.|+.|++.||+++..|+.|+.++....
T Consensus 134 r~~~~GDW~Cp~C~fhNfarn~~C~rC~~~r~~~a 168 (280)
T KOG4198|consen 134 RPWRSGDWECPGCNFHNFARNSECFRCGAKRPLAA 168 (280)
T ss_pred CCccccCcccCCCCceeccccchhhhcCCcCcccc
Confidence 44578999999999999999999999999886543
No 234
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=63.95 E-value=4.8 Score=50.19 Aligned_cols=71 Identities=18% Similarity=0.338 Sum_probs=59.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCee--eCCeeEEEeec
Q 043164 288 TIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLV--VDGRKLFFEYS 365 (1049)
Q Consensus 288 ~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~--i~Gr~i~V~~A 365 (1049)
+.++-|.+-..+-..|..+|..||.|.+++..++-+ .|.|+|.+.+.|..|+++| .|.. +-|-+.+|.+|
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl--~gkevs~~g~Ps~V~~a 371 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDAL--QGKEVSVTGAPSRVSFA 371 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhh--cCCcccccCCceeEEec
Confidence 345556666777888999999999999999988855 8999999999999999999 6665 46889999997
Q ss_pred C
Q 043164 366 S 366 (1049)
Q Consensus 366 ~ 366 (1049)
.
T Consensus 372 k 372 (1007)
T KOG4574|consen 372 K 372 (1007)
T ss_pred c
Confidence 4
No 235
>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9G_A 2EBR_A 2WX0_C 2WX1_C 2WWZ_C 3GJ6_B 2LK0_A 2LK1_A 3GJ5_B 3GJ8_B ....
Probab=63.40 E-value=3.4 Score=29.93 Aligned_cols=28 Identities=36% Similarity=0.867 Sum_probs=22.3
Q ss_pred CCccccccccccccccccccccccCCCC
Q 043164 394 PCDWMCTICGCVNFARRTSCFQCNEART 421 (1049)
Q Consensus 394 p~dw~~~~~~~~n~~~r~~~~~~~~~~~ 421 (1049)
..+|.|..|.+.|+.....|+.|..+++
T Consensus 2 ~g~W~C~~C~~~N~~~~~~C~~C~~~rp 29 (30)
T PF00641_consen 2 EGDWKCPSCTFMNPASRSKCVACGAPRP 29 (30)
T ss_dssp SSSEEETTTTEEEESSSSB-TTT--BTT
T ss_pred CcCccCCCCcCCchHHhhhhhCcCCCCc
Confidence 3689999999999999999999987764
No 236
>PF02956 TT_ORF1: TT viral orf 1; InterPro: IPR004219 Torque teno virus, isolated initially from a Japanese patient with hepatitis of unknown aetiology, has since been found to infect both healthy and diseased individuals and numerous prevalence studies have raised questions about its role in unexplained hepatitis. ORF1 is a large 750 residue protein.
Probab=62.70 E-value=6.5 Score=48.10 Aligned_cols=21 Identities=14% Similarity=0.153 Sum_probs=12.3
Q ss_pred cceEEEEcCCHHHHHHHHHHh
Q 043164 328 RGFAFIDFPSVGAARAMMDRI 348 (1049)
Q Consensus 328 rG~AFVeF~~~e~A~~Al~~l 348 (1049)
-||+...|.-..--+..+...
T Consensus 109 Gg~~~~~fsL~~Ly~e~~~~~ 129 (525)
T PF02956_consen 109 GGFSTMTFSLQYLYDEHLRHR 129 (525)
T ss_pred CCeeCcEEEHHHHHHHHHHHh
Confidence 457777776555555555443
No 237
>smart00547 ZnF_RBZ Zinc finger domain. Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.
Probab=60.57 E-value=5.3 Score=27.76 Aligned_cols=25 Identities=44% Similarity=1.157 Sum_probs=22.2
Q ss_pred CccccccccccccccccccccccCC
Q 043164 395 CDWMCTICGCVNFARRTSCFQCNEA 419 (1049)
Q Consensus 395 ~dw~~~~~~~~n~~~r~~~~~~~~~ 419 (1049)
.+|.|..|.+.|+..+..|+.|..+
T Consensus 1 g~W~C~~C~~~N~~~~~~C~~C~~p 25 (26)
T smart00547 1 GDWECPACTFLNFASRSKCFACGAP 25 (26)
T ss_pred CcccCCCCCCcChhhhccccccCCc
Confidence 3799999999999999999988754
No 238
>KOG2950 consensus Uncharacterized protein involved in protein-protein interaction, contains polyproline-binding GYF domain [General function prediction only]
Probab=58.64 E-value=3.9 Score=46.06 Aligned_cols=48 Identities=17% Similarity=0.180 Sum_probs=39.1
Q ss_pred CcccccCCCceeeeCCcccceeCCCCceeeCCCcceeeecCCCceeecCC
Q 043164 598 SGFVWDEASGYYYDAASGFYYDGNTGLYYDGNSGIWYSYDQQTQQYIPCT 647 (1049)
Q Consensus 598 ~~~~~~~~sgy~yd~~~g~yyd~~~g~yyd~~~~~yy~~d~~t~~y~~~~ 647 (1049)
--|+++...+|++-++++|+|++++|||-+..+..| ++..+..|..+.
T Consensus 292 fkwe~d~~~~yGp~ts~~m~~w~~egyf~~~v~~r~--~~~~n~~f~~~~ 339 (348)
T KOG2950|consen 292 FKWEFDEDEYYGPYTSSEMQYWQNEGYFKNAVYVRF--HDEENGEFWIVV 339 (348)
T ss_pred eEeecccccccccccHHHHhhhhccCccccceeEEe--ecCCCccccccc
Confidence 347788888999999999999999999999998877 666666665543
No 239
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.30 E-value=52 Score=39.91 Aligned_cols=83 Identities=19% Similarity=0.256 Sum_probs=64.5
Q ss_pred CCCcceEEEeCCCcc-CcHHHHHHHhhcc----CCeeeEEEeecCC----------CCc---------------------
Q 043164 444 TGPTHVLVVRGLDEY-ADEEMLRYEFSKH----APIKDLRLVRDKF----------THV--------------------- 487 (1049)
Q Consensus 444 ~~ps~~LfV~NLp~~-~teedLre~Fs~f----G~I~~v~I~rD~~----------tg~--------------------- 487 (1049)
..+|+.|-|-||.+. +..++|.-+|+.| |.|..|.|..... .|-
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 346899999999987 8889999998877 4688887764210 111
Q ss_pred ----------------eeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEEe
Q 043164 488 ----------------SRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYA 526 (1049)
Q Consensus 488 ----------------SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~A 526 (1049)
..=||.|+|.++..|.+....+.|..|.--+..|-+.|.
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 112899999999999999999999999766777777773
No 240
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.97 E-value=33 Score=41.52 Aligned_cols=80 Identities=19% Similarity=0.385 Sum_probs=62.0
Q ss_pred CCCCceEEEcCCCCC-CCHHHHHHHHhhc----CCeeEEEEeecCC----------CCC-------------c-------
Q 043164 283 VAPSGTIVVKGLSQK-TTEEDLYQILAEW----GPLRHVRVIKERN----------SGV-------------S------- 327 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~~-~tee~L~~~F~~~----G~i~~v~i~~dk~----------tg~-------------s------- 327 (1049)
..++++|-|-||.+. +...+|.-+|..| |.|.+|.|..... +|- +
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 456789999999985 7899999999877 5788988876421 111 0
Q ss_pred -----------------cceEEEEcCCHHHHHHHHHHhcCCCeeeCC--eeEEEee
Q 043164 328 -----------------RGFAFIDFPSVGAARAMMDRIGDDGLVVDG--RKLFFEY 364 (1049)
Q Consensus 328 -----------------rG~AFVeF~~~e~A~~Al~~l~~ng~~i~G--r~i~V~~ 364 (1049)
-=||.|+|.+.+.|......+ +|+.+.. ..|-+.|
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~C--DG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEEC--DGIEFESSANKLDLRF 304 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhc--Ccceeccccceeeeee
Confidence 017999999999999999998 9999974 5555556
No 241
>PF15232 DUF4585: Domain of unknown function (DUF4585)
Probab=48.55 E-value=15 Score=32.50 Aligned_cols=32 Identities=25% Similarity=0.441 Sum_probs=15.3
Q ss_pred ccccCCCceeeeCCcccceeCCCCceeeCCCcce
Q 043164 600 FVWDEASGYYYDAASGFYYDGNTGLYYDGNSGIW 633 (1049)
Q Consensus 600 ~~~~~~sgy~yd~~~g~yyd~~~g~yyd~~~~~y 633 (1049)
...|+.||=||=-.+.. -+.+..+||+.||+|
T Consensus 10 vL~DP~SG~Yy~vd~P~--Qp~~k~lfDPETGqY 41 (75)
T PF15232_consen 10 VLQDPESGQYYVVDAPV--QPKTKTLFDPETGQY 41 (75)
T ss_pred EeecCCCCCEEEEecCC--CcceeeeecCCCCcE
Confidence 44566665443111111 344566666666554
No 242
>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet. This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others.; GO: 0005515 protein binding; PDB: 2JXW_A 2DK1_A 2JOC_A 2JO9_A 1YIU_A 1O6W_A 2JMF_A 1TK7_A 2KYK_A 2L5F_A ....
Probab=46.38 E-value=17 Score=26.52 Aligned_cols=18 Identities=39% Similarity=0.770 Sum_probs=13.0
Q ss_pred eeeCCCcceeeecCCCce
Q 043164 625 YYDGNSGIWYSYDQQTQQ 642 (1049)
Q Consensus 625 yyd~~~~~yy~~d~~t~~ 642 (1049)
++|+.+|..||||..|++
T Consensus 8 ~~~~~~g~~YY~N~~t~~ 25 (31)
T PF00397_consen 8 YFDPDSGRPYYYNHETGE 25 (31)
T ss_dssp EEETTTSEEEEEETTTTE
T ss_pred EEcCCCCCEEEEeCCCCC
Confidence 566557888888888764
No 243
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=44.99 E-value=39 Score=37.79 Aligned_cols=84 Identities=17% Similarity=0.220 Sum_probs=61.8
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecC-------CCCceeeEEEEEeCCHHHHHH----HHHHhCCCee
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDK-------FTHVSRGFAFLHFHSVEDASK----ALEATNGTTL 514 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~-------~tg~SrGfAFVeF~s~e~A~k----Al~~LnG~~~ 514 (1049)
-++.|.+.|+...++--.+...|.+||+|+.|.|+.+. ........+.+-|-+.+.+.. .++.|.-..-
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999988999999999999999999865 112234578888988877653 3444443322
Q ss_pred ccCCeEEEEEEeecC
Q 043164 515 EKNGQILRVAYAKSI 529 (1049)
Q Consensus 515 ~i~Gr~L~V~~Ak~k 529 (1049)
.+....|.|.|..-+
T Consensus 94 ~L~S~~L~lsFV~l~ 108 (309)
T PF10567_consen 94 KLKSESLTLSFVSLN 108 (309)
T ss_pred hcCCcceeEEEEEEe
Confidence 236788888887654
No 244
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=44.48 E-value=10 Score=41.35 Aligned_cols=64 Identities=25% Similarity=0.438 Sum_probs=42.6
Q ss_pred CCceEEEcCCCCC------------CCHHHHHHHHhhcCCeeEEEEeec-----CCCCCc-----cce---------EEE
Q 043164 285 PSGTIVVKGLSQK------------TTEEDLYQILAEWGPLRHVRVIKE-----RNSGVS-----RGF---------AFI 333 (1049)
Q Consensus 285 ps~~L~V~nLp~~------------~tee~L~~~F~~~G~i~~v~i~~d-----k~tg~s-----rG~---------AFV 333 (1049)
-..|||+.+||-. -+|+-|+..|+.||.|..|.|+.- ..+|.. .|| |||
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayv 227 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYV 227 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHH
Confidence 3458888888854 267789999999999988887542 224443 333 345
Q ss_pred EcCCHHHHHHHHHHh
Q 043164 334 DFPSVGAARAMMDRI 348 (1049)
Q Consensus 334 eF~~~e~A~~Al~~l 348 (1049)
+|.....-..||.+|
T Consensus 228 qfmeykgfa~amdal 242 (445)
T KOG2891|consen 228 QFMEYKGFAQAMDAL 242 (445)
T ss_pred HHHHHHhHHHHHHHH
Confidence 555555556677776
No 245
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=40.69 E-value=9 Score=45.78 Aligned_cols=69 Identities=14% Similarity=0.045 Sum_probs=51.0
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCee
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTL 514 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~ 514 (1049)
-++.|||+|+++.++..+|..+|..+--+..+.+..+..-..-.-+.+|+|.---.-.-|+.+||+..+
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl 298 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRL 298 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccc
Confidence 367899999999999999999999987777776654432222345788999765556666677777655
No 246
>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]
Probab=38.63 E-value=63 Score=39.20 Aligned_cols=11 Identities=27% Similarity=0.389 Sum_probs=7.1
Q ss_pred CeEEEEEEeec
Q 043164 518 GQILRVAYAKS 528 (1049)
Q Consensus 518 Gr~L~V~~Ak~ 528 (1049)
|.-|.|...+.
T Consensus 541 G~WLAvRiG~d 551 (1027)
T KOG3580|consen 541 GNWLAVRIGND 551 (1027)
T ss_pred cceEEEeeccc
Confidence 66777776553
No 247
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=36.32 E-value=35 Score=35.60 Aligned_cols=74 Identities=16% Similarity=0.180 Sum_probs=54.6
Q ss_pred eEEEeCCCccCcH-----HHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEE
Q 043164 449 VLVVRGLDEYADE-----EMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRV 523 (1049)
Q Consensus 449 ~LfV~NLp~~~te-----edLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V 523 (1049)
.|++.+|+..+.. .....+|-+|.....+.+++ +.++.-|.|.+++.|..|.-.+++..|. ++..++.
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~-~~~~~k~ 84 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFN-GKNELKL 84 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccC-CCceEEE
Confidence 5677777765422 22455677777766666665 4568889999999999999999999995 3348999
Q ss_pred EEeecC
Q 043164 524 AYAKSI 529 (1049)
Q Consensus 524 ~~Ak~k 529 (1049)
-||...
T Consensus 85 yfaQ~~ 90 (193)
T KOG4019|consen 85 YFAQPG 90 (193)
T ss_pred EEccCC
Confidence 898775
No 248
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=31.03 E-value=1.4e+02 Score=34.84 Aligned_cols=84 Identities=20% Similarity=0.350 Sum_probs=60.3
Q ss_pred CCCCcceEEEeCCCcc-CcHHHHHHHhhcc----CCeeeEEEeecCC---------------------------------
Q 043164 443 DTGPTHVLVVRGLDEY-ADEEMLRYEFSKH----APIKDLRLVRDKF--------------------------------- 484 (1049)
Q Consensus 443 ~~~ps~~LfV~NLp~~-~teedLre~Fs~f----G~I~~v~I~rD~~--------------------------------- 484 (1049)
...+++.|-|-||.+. +...+|..+|+.| |.|..|.|.....
T Consensus 142 ~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~d 221 (622)
T COG5638 142 EGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDD 221 (622)
T ss_pred CCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCc
Confidence 3457899999999987 8889999988876 4566666543110
Q ss_pred -------CC------cee-------------------eEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEEe
Q 043164 485 -------TH------VSR-------------------GFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYA 526 (1049)
Q Consensus 485 -------tg------~Sr-------------------GfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~A 526 (1049)
.| .-+ =||.|+|.++..+.....++.|..+..-+..+-+.|.
T Consensus 222 n~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfv 295 (622)
T COG5638 222 NVFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFV 295 (622)
T ss_pred cchhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeeec
Confidence 00 001 2789999999999888899999888655666677763
No 249
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=30.93 E-value=2.1e+02 Score=25.03 Aligned_cols=48 Identities=23% Similarity=0.399 Sum_probs=38.0
Q ss_pred CcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeec
Q 043164 459 ADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLE 515 (1049)
Q Consensus 459 ~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~ 515 (1049)
++.++|+..|..|+-. .|..|+ .|| ||.|.+..+|.++....+|..+.
T Consensus 12 ~~v~d~K~~Lr~y~~~---~I~~d~-----tGf-YIvF~~~~Ea~rC~~~~~~~~~f 59 (66)
T PF11767_consen 12 VTVEDFKKRLRKYRWD---RIRDDR-----TGF-YIVFNDSKEAERCFRAEDGTLFF 59 (66)
T ss_pred ccHHHHHHHHhcCCcc---eEEecC-----CEE-EEEECChHHHHHHHHhcCCCEEE
Confidence 5778999999999753 344443 244 99999999999999999999883
No 250
>PF15337 Vasculin: Vascular protein family Vasculin-like 1
Probab=30.38 E-value=24 Score=32.55 Aligned_cols=13 Identities=46% Similarity=1.066 Sum_probs=11.5
Q ss_pred HHHHHHhcCCCCC
Q 043164 977 GNRMLRSMGWHEG 989 (1049)
Q Consensus 977 g~~ml~~mGw~~G 989 (1049)
-++||+.|||++-
T Consensus 12 EhRLLk~MGWqEy 24 (97)
T PF15337_consen 12 EHRLLKAMGWQEY 24 (97)
T ss_pred HHHHHHHhccccc
Confidence 4799999999986
No 251
>PF07808 RED_N: RED-like protein N-terminal region; InterPro: IPR012916 This domain contains sequences that are similar to the N-terminal region of Red protein (Q13123 from SWISSPROT). This and related proteins contain a RED repeat which consists of a number of RE and RD sequence elements []. The region in question has several conserved NLS sequences and a putative trimeric coiled-coil region [], suggesting that these proteins are expressed in the nucleus []. The function of Red protein is unknown, but efficient sequestration to nuclear bodies suggests that its expression may be tightly regulated, or that the protein self-aggregates extremely efficiently []. ; GO: 0005634 nucleus
Probab=30.22 E-value=24 Score=38.70 Aligned_cols=19 Identities=42% Similarity=0.490 Sum_probs=15.6
Q ss_pred CCCcccchHHHHHhhcCCC
Q 043164 896 PQTTYRDRAAERRSLYGSS 914 (1049)
Q Consensus 896 ~~~~yrDRa~eRR~~~g~~ 914 (1049)
....|||||+|||.-....
T Consensus 20 ~~~~YrDRA~eRR~~~~~d 38 (238)
T PF07808_consen 20 LAPGYRDRAKERREGENDD 38 (238)
T ss_pred cccchhhHHHHHHcccCcc
Confidence 3578999999999877654
No 252
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=28.26 E-value=82 Score=30.68 Aligned_cols=48 Identities=19% Similarity=0.315 Sum_probs=27.1
Q ss_pred eEEEeCCCccC---------cHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCH
Q 043164 449 VLVVRGLDEYA---------DEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSV 499 (1049)
Q Consensus 449 ~LfV~NLp~~~---------teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~ 499 (1049)
+++|-|++... +.+.|.+.|+.|.+++ |+.+-+.. -..|++.|+|..-
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~ 66 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKD 66 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SS
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCC
Confidence 56777886543 4478999999999985 54445432 4789999999864
No 253
>PF15232 DUF4585: Domain of unknown function (DUF4585)
Probab=26.75 E-value=42 Score=29.85 Aligned_cols=16 Identities=25% Similarity=0.347 Sum_probs=12.1
Q ss_pred eeecCCCceeecCCCC
Q 043164 634 YSYDQQTQQYIPCTDQ 649 (1049)
Q Consensus 634 y~~d~~t~~y~~~~~~ 649 (1049)
--||.+|++|+-+.-.
T Consensus 32 ~lfDPETGqYVeV~iP 47 (75)
T PF15232_consen 32 TLFDPETGQYVEVLIP 47 (75)
T ss_pred eeecCCCCcEEEEeCC
Confidence 3489999999976653
No 254
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=25.79 E-value=1.6e+02 Score=32.81 Aligned_cols=50 Identities=20% Similarity=0.241 Sum_probs=37.6
Q ss_pred CCcceEEEeCCCccCcHHHHHHHhhccCCe-eeEEEeecCCCCceeeEEEEEeCCHH
Q 043164 445 GPTHVLVVRGLDEYADEEMLRYEFSKHAPI-KDLRLVRDKFTHVSRGFAFLHFHSVE 500 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLre~Fs~fG~I-~~v~I~rD~~tg~SrGfAFVeF~s~e 500 (1049)
+...-|+|+||+.++-..||+..+-+.+.+ ..|.. .-..|-||++|.+..
T Consensus 328 ~~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw------kg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 328 GAKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW------KGHFGKCFLHFGNRK 378 (396)
T ss_pred ccccceeeccCccccchHHHHHHHHhcCCCceeEee------ecCCcceeEecCCcc
Confidence 334569999999999999999999988764 23322 225789999997643
No 255
>TIGR03696 Rhs_assc_core RHS repeat-associated core domain. This model represents a conserved unique core sequence shared by large numbers of proteins. It is occasional in the Archaea Methanosarcina barkeri) but common in bacteria and eukaryotes. Most fall into two large classes. One class consists of long proteins in which two classes of repeats are abundant: an FG-GAP repeat (pfam01839) class, and an RHS repeat (pfam05593) or YD repeat (TIGR01643). This class includes secreted bacterial insecticidal toxins and intercellular signalling proteins such as the teneurins in animals. The other class consists of uncharacterized proteins shorter than 400 amino acids, where this core domain of about 75 amino acids tends to occur in the N-terminal half. Over twenty such proteins are found in Pseudomonas putida alone; little sequence similarity or repeat structure is found among these proteins outside the region modeled by this domain.
Probab=25.12 E-value=50 Score=29.44 Aligned_cols=29 Identities=48% Similarity=0.939 Sum_probs=12.3
Q ss_pred ceeeeCCcccceeCCCCceeeCCCcceeeec
Q 043164 607 GYYYDAASGFYYDGNTGLYYDGNSGIWYSYD 637 (1049)
Q Consensus 607 gy~yd~~~g~yyd~~~g~yyd~~~~~yy~~d 637 (1049)
|.++|+.+|++|- ..=|||+.+|.|..-|
T Consensus 21 G~~~d~~tgl~~~--~~R~Ydp~~Grf~~~D 49 (76)
T TIGR03696 21 GQYYDAETGLYYN--GARYYDPELGRFLSPD 49 (76)
T ss_pred CEeEhhhcCCeee--CCEeEeCCCCceeccC
Confidence 3455555555431 1114444444444333
No 256
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=23.94 E-value=79 Score=36.70 Aligned_cols=67 Identities=22% Similarity=0.319 Sum_probs=47.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCC-eeEEEEeecCC--CCCccceEEEEcCCHHHHHHHHHHhcCCCeee
Q 043164 287 GTIVVKGLSQKTTEEDLYQILAEWGP-LRHVRVIKERN--SGVSRGFAFIDFPSVGAARAMMDRIGDDGLVV 355 (1049)
Q Consensus 287 ~~L~V~nLp~~~tee~L~~~F~~~G~-i~~v~i~~dk~--tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i 355 (1049)
..|.|.+||+..++.+|.+-+.+|-. +....+..... -..-.++|||.|...++.......+ +|+.+
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f--~g~if 77 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRF--DGYIF 77 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhC--CceEE
Confidence 57899999999999999988887643 33333332111 1123568999999999988888776 66543
No 257
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=23.78 E-value=38 Score=37.18 Aligned_cols=70 Identities=20% Similarity=0.415 Sum_probs=44.4
Q ss_pred CcHHHHHHHhhccCCeeeEEEeec-----CCCCce-----eeEE---------EEEeCCHHHHHHHHHHhCCCeec--cC
Q 043164 459 ADEEMLRYEFSKHAPIKDLRLVRD-----KFTHVS-----RGFA---------FLHFHSVEDASKALEATNGTTLE--KN 517 (1049)
Q Consensus 459 ~teedLre~Fs~fG~I~~v~I~rD-----~~tg~S-----rGfA---------FVeF~s~e~A~kAl~~LnG~~~~--i~ 517 (1049)
..++-|+..|..||.|..|.|+.- .-+|.. .||+ ||+|..-..-..||.+|.|+.+. ++
T Consensus 173 pse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqfmeykgfa~amdalr~~k~akk~d 252 (445)
T KOG2891|consen 173 PSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQFMEYKGFAQAMDALRGMKLAKKGD 252 (445)
T ss_pred ChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHHHHHHhHHHHHHHHhcchHHhhcC
Confidence 467889999999999999988742 123333 3333 45555555667788888877553 22
Q ss_pred C----eEEEEEEeec
Q 043164 518 G----QILRVAYAKS 528 (1049)
Q Consensus 518 G----r~L~V~~Ak~ 528 (1049)
+ -.|+|.|..+
T Consensus 253 ~~ffqanvkvdfdrs 267 (445)
T KOG2891|consen 253 DGFFQANVKVDFDRS 267 (445)
T ss_pred Ccccccccccccchh
Confidence 2 2456666444
No 258
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=22.69 E-value=83 Score=30.65 Aligned_cols=50 Identities=24% Similarity=0.471 Sum_probs=28.0
Q ss_pred eEEEcCCCCC---------CCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHH
Q 043164 288 TIVVKGLSQK---------TTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGA 340 (1049)
Q Consensus 288 ~L~V~nLp~~---------~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~ 340 (1049)
+++|-|++.. ++.+.|.+.|..|.++. |+.+.++. -..|+++|+|...-.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w~ 68 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDWS 68 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCChH
Confidence 4667777543 45678999999999874 55556542 467899999987544
No 259
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=22.43 E-value=1.4e+02 Score=26.27 Aligned_cols=63 Identities=17% Similarity=0.294 Sum_probs=43.9
Q ss_pred HHHHHHhhccC-CeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEEeecC
Q 043164 462 EMLRYEFSKHA-PIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYAKSI 529 (1049)
Q Consensus 462 edLre~Fs~fG-~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~Ak~k 529 (1049)
++|.+.|...| .|..|.-+..+.+...--.-||++....+ ..+.++=..| ++..|+|......
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~---~k~i~~Ik~l--~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPN---NKEIYKIKTL--CGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcc---ccceeehHhh--CCeEEEEecCCCC
Confidence 46888888888 57888888777667777788888876544 2233333444 6888898876554
No 260
>TIGR03836 termin_org_HMW1 cytadherence high molecular weight protein 1 N-terminal region. This model describes the N-terminal region of the Mycoplasma cytadherence protein HMW1, up to but not including the first EAGR box domain. The apparent orthologs in different Mycoplasma species differ profoundly in archictecture C-terminally to the region described here.
Probab=20.70 E-value=69 Score=28.13 Aligned_cols=27 Identities=37% Similarity=0.886 Sum_probs=12.8
Q ss_pred cccCCC-cee--eeCCcccceeCCCCceee
Q 043164 601 VWDEAS-GYY--YDAASGFYYDGNTGLYYD 627 (1049)
Q Consensus 601 ~~~~~s-gy~--yd~~~g~yyd~~~g~yyd 627 (1049)
.||..- ||| |++.+|.||||-..+=||
T Consensus 37 AyDaDgNgYYIafn~EtgvyydPYgdtEyD 66 (82)
T TIGR03836 37 AYDADGNGYYIAFNPETGVYYDPYGDTEYD 66 (82)
T ss_pred EEecCCCEEEEEecCCCceEecCCCcceee
Confidence 344332 554 555555555554444333
No 261
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.24 E-value=1.8e+02 Score=33.94 Aligned_cols=54 Identities=15% Similarity=0.245 Sum_probs=45.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCe-eEEEEeecCCCCCccceEEEEcCCHHHHHHHHHH
Q 043164 287 GTIVVKGLSQKTTEEDLYQILAEWGPL-RHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDR 347 (1049)
Q Consensus 287 ~~L~V~nLp~~~tee~L~~~F~~~G~i-~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~ 347 (1049)
..|-|.++|.....+||..+|+.|+.- -+|+.+-|. .||-.|.++.-|..||..
T Consensus 392 HVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 392 HVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 578899999999999999999999753 566666664 799999999999999953
No 262
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.02 E-value=1.7e+02 Score=34.14 Aligned_cols=55 Identities=29% Similarity=0.320 Sum_probs=45.8
Q ss_pred cceEEEeCCCccCcHHHHHHHhhccCCe-eeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHH
Q 043164 447 THVLVVRGLDEYADEEMLRYEFSKHAPI-KDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEA 508 (1049)
Q Consensus 447 s~~LfV~NLp~~~teedLre~Fs~fG~I-~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~ 508 (1049)
.++|-|-++|...-.+||...|+.|+.- -.|+.+-|. .||-.|.++.-|..||..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 4789999999998888999999999753 456666653 899999999999998875
Done!