Query 043164
Match_columns 1049
No_of_seqs 747 out of 4100
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 23:55:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043164.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043164hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 2.3E-29 8E-34 267.3 19.9 171 282-529 11-181 (213)
2 1b7f_A Protein (SXL-lethal pro 100.0 8.2E-29 2.8E-33 251.2 21.7 167 285-526 2-168 (168)
3 3md3_A Nuclear and cytoplasmic 100.0 2.3E-28 7.8E-33 246.9 22.5 166 287-528 1-166 (166)
4 1fxl_A Paraneoplastic encephal 100.0 1.7E-28 5.8E-33 248.1 21.5 165 285-526 1-167 (167)
5 1l3k_A Heterogeneous nuclear r 100.0 3E-28 1E-32 253.6 21.9 177 282-531 9-185 (196)
6 2qfj_A FBP-interacting repress 100.0 3.2E-28 1.1E-32 257.3 20.2 184 284-533 26-209 (216)
7 2cjk_A Nuclear polyadenylated 100.0 1.3E-28 4.4E-33 249.7 12.9 165 285-529 2-166 (167)
8 3nmr_A Cugbp ELAV-like family 99.9 3.4E-27 1.2E-31 240.6 19.7 168 285-527 2-175 (175)
9 2yh0_A Splicing factor U2AF 65 99.9 2.7E-27 9.2E-32 246.8 18.5 183 284-530 2-195 (198)
10 3smz_A Protein raver-1, ribonu 99.9 2.9E-26 9.9E-31 253.5 24.9 171 284-529 93-264 (284)
11 2g4b_A Splicing factor U2AF 65 99.9 2.7E-26 9.3E-31 233.7 20.7 159 285-527 3-172 (172)
12 1fje_B Nucleolin RBD12, protei 99.9 1.2E-26 4.3E-31 237.3 15.0 166 282-529 9-174 (175)
13 3pgw_A U1-A; protein-RNA compl 99.9 2.5E-25 8.6E-30 245.7 25.4 236 282-528 5-282 (282)
14 3tyt_A Heterogeneous nuclear r 99.9 2.6E-25 8.9E-30 235.0 21.3 195 284-526 2-204 (205)
15 2adc_A Polypyrimidine tract-bi 99.9 3E-25 1E-29 238.3 22.1 196 282-529 30-228 (229)
16 2ghp_A U4/U6 snRNA-associated 99.9 3E-25 1E-29 246.4 20.1 174 284-529 115-291 (292)
17 1qm9_A Polypyrimidine tract-bi 99.9 4E-25 1.4E-29 231.1 19.4 192 286-529 3-197 (198)
18 3smz_A Protein raver-1, ribonu 99.9 1.9E-24 6.4E-29 239.0 22.0 156 284-529 20-175 (284)
19 3sde_A Paraspeckle component 1 99.9 2.5E-24 8.5E-29 235.8 20.5 159 283-529 19-179 (261)
20 2ghp_A U4/U6 snRNA-associated 99.9 2.2E-24 7.5E-29 239.4 19.0 160 282-529 37-197 (292)
21 2kn4_A Immunoglobulin G-bindin 99.8 8.2E-19 2.8E-23 177.0 16.1 85 446-532 69-153 (158)
22 4f25_A Polyadenylate-binding p 99.7 2.2E-17 7.6E-22 157.9 11.3 77 286-366 5-81 (115)
23 4fxv_A ELAV-like protein 1; RN 99.7 4.7E-17 1.6E-21 151.5 11.4 80 284-365 17-96 (99)
24 2lxi_A RNA-binding protein 10; 99.7 3.3E-17 1.1E-21 150.1 9.5 80 286-366 1-81 (91)
25 4fxv_A ELAV-like protein 1; RN 99.7 1.1E-16 3.8E-21 149.0 11.8 80 447-528 19-98 (99)
26 2i2y_A Fusion protein consists 99.7 1E-16 3.6E-21 160.3 12.3 140 324-529 9-148 (150)
27 2lkz_A RNA-binding protein 5; 99.7 1.4E-16 4.8E-21 147.2 8.4 82 447-528 9-94 (95)
28 2lxi_A RNA-binding protein 10; 99.7 1.4E-16 4.7E-21 146.0 7.8 83 447-531 1-85 (91)
29 3s8s_A Histone-lysine N-methyl 99.6 4.1E-16 1.4E-20 148.0 11.3 81 284-366 4-84 (110)
30 2dnz_A Probable RNA-binding pr 99.6 1E-15 3.6E-20 140.5 12.5 85 283-369 2-86 (95)
31 3s8s_A Histone-lysine N-methyl 99.6 1.3E-15 4.3E-20 144.7 12.2 82 446-529 5-86 (110)
32 2lkz_A RNA-binding protein 5; 99.6 3.1E-16 1E-20 144.9 7.7 80 284-365 7-92 (95)
33 3bs9_A Nucleolysin TIA-1 isofo 99.6 1.3E-15 4.5E-20 137.4 10.9 82 283-366 3-84 (87)
34 2x1f_A MRNA 3'-END-processing 99.6 1.8E-15 6.2E-20 139.5 11.4 81 285-367 1-81 (96)
35 2dnz_A Probable RNA-binding pr 99.6 1.9E-15 6.6E-20 138.8 11.4 87 446-534 4-90 (95)
36 3mdf_A Peptidyl-prolyl CIS-tra 99.6 1.8E-15 6.1E-20 135.9 10.9 81 283-365 4-84 (85)
37 2f3j_A RNA and export factor b 99.6 2.4E-15 8.2E-20 155.0 13.4 82 282-366 84-165 (177)
38 3bs9_A Nucleolysin TIA-1 isofo 99.6 2.6E-15 9E-20 135.4 11.9 82 446-529 5-86 (87)
39 3pgw_S U1-70K; protein-RNA com 99.6 3.7E-16 1.3E-20 183.0 7.8 82 446-529 101-182 (437)
40 2dgs_A DAZ-associated protein 99.6 3E-15 1E-19 138.8 12.4 84 282-368 6-89 (99)
41 2dnm_A SRP46 splicing factor; 99.6 1.9E-15 6.6E-20 141.1 11.1 84 282-367 9-92 (103)
42 2cqb_A Peptidyl-prolyl CIS-tra 99.6 2.5E-15 8.6E-20 139.9 11.9 84 283-368 9-92 (102)
43 1whw_A Hypothetical protein ri 99.6 4E-15 1.4E-19 137.8 13.0 83 283-367 5-87 (99)
44 2cqc_A Arginine/serine-rich sp 99.6 2.5E-15 8.6E-20 137.9 11.4 82 282-365 11-92 (95)
45 2cq0_A Eukaryotic translation 99.6 2.4E-15 8.1E-20 140.5 11.3 82 284-367 13-94 (103)
46 3mdf_A Peptidyl-prolyl CIS-tra 99.6 2.7E-15 9.1E-20 134.8 11.2 81 445-527 5-85 (85)
47 3md1_A Nuclear and cytoplasmic 99.6 3.1E-15 1.1E-19 133.7 11.6 79 286-366 1-79 (83)
48 2cpz_A CUG triplet repeat RNA- 99.6 3.2E-15 1.1E-19 142.5 12.4 83 283-367 22-104 (115)
49 1x5t_A Splicing factor 3B subu 99.6 2.2E-15 7.5E-20 138.6 10.9 82 284-367 3-85 (96)
50 3md1_A Nuclear and cytoplasmic 99.6 4E-15 1.4E-19 133.0 12.2 81 447-529 1-81 (83)
51 1x5s_A Cold-inducible RNA-bind 99.6 2.6E-15 8.7E-20 139.9 11.3 85 282-368 8-92 (102)
52 2e5h_A Zinc finger CCHC-type a 99.6 3.2E-15 1.1E-19 137.0 11.4 81 283-365 13-93 (94)
53 2cpf_A RNA binding motif prote 99.6 3.1E-15 1.1E-19 138.3 11.3 82 284-367 3-87 (98)
54 2cq0_A Eukaryotic translation 99.6 5.8E-15 2E-19 137.8 13.2 86 445-532 13-98 (103)
55 2dgs_A DAZ-associated protein 99.6 4.3E-15 1.5E-19 137.7 12.2 85 445-532 8-92 (99)
56 2div_A TRNA selenocysteine ass 99.6 2.7E-15 9.2E-20 138.9 10.8 83 283-367 6-93 (99)
57 1x4h_A RNA-binding protein 28; 99.6 5E-15 1.7E-19 140.0 12.8 84 282-367 11-100 (111)
58 1x5t_A Splicing factor 3B subu 99.6 3.5E-15 1.2E-19 137.3 11.3 86 446-533 4-90 (96)
59 2la6_A RNA-binding protein FUS 99.6 3.1E-15 1.1E-19 138.7 10.9 84 280-365 7-98 (99)
60 1x5u_A Splicing factor 3B subu 99.6 4.8E-15 1.6E-19 138.8 12.3 83 283-367 12-94 (105)
61 2do4_A Squamous cell carcinoma 99.6 4.8E-15 1.6E-19 137.6 12.2 83 282-367 13-95 (100)
62 2x1f_A MRNA 3'-END-processing 99.6 3.5E-15 1.2E-19 137.6 11.2 82 446-529 1-82 (96)
63 2do4_A Squamous cell carcinoma 99.6 8.1E-15 2.8E-19 136.1 13.7 83 445-530 15-97 (100)
64 2cpz_A CUG triplet repeat RNA- 99.6 8.3E-15 2.8E-19 139.7 14.1 85 445-531 23-107 (115)
65 1whw_A Hypothetical protein ri 99.6 6E-15 2.1E-19 136.6 12.7 86 445-532 6-91 (99)
66 3p5t_L Cleavage and polyadenyl 99.6 9.3E-16 3.2E-20 139.9 7.1 79 287-367 2-82 (90)
67 1x5s_A Cold-inducible RNA-bind 99.6 3.9E-15 1.3E-19 138.6 11.5 87 445-533 10-96 (102)
68 2cqc_A Arginine/serine-rich sp 99.6 6.9E-15 2.4E-19 134.9 13.0 83 444-528 12-94 (95)
69 2cqb_A Peptidyl-prolyl CIS-tra 99.6 4.8E-15 1.6E-19 138.1 11.9 86 445-532 10-95 (102)
70 3ulh_A THO complex subunit 4; 99.6 3.7E-15 1.3E-19 140.0 11.3 82 281-365 24-105 (107)
71 2e5h_A Zinc finger CCHC-type a 99.6 5.6E-15 1.9E-19 135.3 12.0 81 445-527 14-94 (94)
72 2jrs_A RNA-binding protein 39; 99.6 3.7E-15 1.3E-19 140.9 10.9 83 282-366 22-104 (108)
73 2dgp_A Bruno-like 4, RNA bindi 99.6 4.6E-15 1.6E-19 139.1 11.2 85 282-368 9-96 (106)
74 2dgo_A Cytotoxic granule-assoc 99.6 6.2E-15 2.1E-19 140.5 12.2 83 283-367 12-94 (115)
75 2dgo_A Cytotoxic granule-assoc 99.6 1.6E-14 5.6E-19 137.5 15.0 85 445-531 13-97 (115)
76 3ns6_A Eukaryotic translation 99.6 1.6E-15 5.4E-20 141.3 7.7 80 284-365 4-90 (100)
77 1wi8_A EIF-4B, eukaryotic tran 99.6 6.7E-15 2.3E-19 137.7 12.0 83 282-368 11-94 (104)
78 1p27_B RNA-binding protein 8A; 99.6 5.8E-15 2E-19 138.5 11.5 83 446-530 22-104 (106)
79 2cpf_A RNA binding motif prote 99.6 6.3E-15 2.1E-19 136.2 11.5 86 446-533 4-92 (98)
80 2lea_A Serine/arginine-rich sp 99.6 1.3E-15 4.6E-20 149.9 7.4 86 446-533 46-131 (135)
81 1p27_B RNA-binding protein 8A; 99.6 5.1E-15 1.7E-19 138.9 10.9 82 283-366 20-101 (106)
82 2dnm_A SRP46 splicing factor; 99.6 4.3E-15 1.5E-19 138.7 10.4 85 445-531 11-95 (103)
83 2dng_A Eukaryotic translation 99.6 7.4E-15 2.5E-19 137.2 11.9 83 281-367 10-92 (103)
84 1x5u_A Splicing factor 3B subu 99.6 7.5E-15 2.6E-19 137.5 11.9 85 445-531 13-97 (105)
85 1oo0_B CG8781-PA, drosophila Y 99.6 6E-15 2.1E-19 139.4 11.3 83 282-366 22-104 (110)
86 2fy1_A RNA-binding motif prote 99.6 6.9E-15 2.4E-19 140.8 11.8 84 283-369 4-87 (116)
87 3ns6_A Eukaryotic translation 99.6 2E-15 6.8E-20 140.6 7.6 82 446-529 5-93 (100)
88 4a8x_A RNA-binding protein wit 99.6 5.7E-15 2E-19 133.4 10.4 83 284-368 2-85 (88)
89 2div_A TRNA selenocysteine ass 99.6 5.6E-15 1.9E-19 136.8 10.3 84 446-531 8-96 (99)
90 2cqp_A RNA-binding protein 12; 99.6 3.5E-15 1.2E-19 137.9 8.9 83 284-368 13-95 (98)
91 2cpe_A RNA-binding protein EWS 99.6 9.2E-15 3.1E-19 138.8 12.0 84 283-368 12-103 (113)
92 1sjq_A Polypyrimidine tract-bi 99.6 5.9E-15 2E-19 138.3 10.2 81 280-366 10-90 (105)
93 2dnh_A Bruno-like 5, RNA bindi 99.6 1E-14 3.5E-19 136.5 11.6 81 284-367 13-96 (105)
94 2dng_A Eukaryotic translation 99.6 2E-14 7E-19 134.2 13.6 85 445-533 13-97 (103)
95 1x4h_A RNA-binding protein 28; 99.6 1.8E-14 6.2E-19 136.2 13.3 85 445-531 13-103 (111)
96 1oo0_B CG8781-PA, drosophila Y 99.6 1.2E-14 4.2E-19 137.3 12.0 83 446-530 25-107 (110)
97 2kxn_B Transformer-2 protein h 99.6 5.4E-15 1.8E-19 144.4 9.8 83 282-366 42-124 (129)
98 1rk8_A CG8781-PA, CG8781-PA pr 99.6 1.2E-14 4.1E-19 147.9 12.7 84 446-531 71-154 (165)
99 2ywk_A Putative RNA-binding pr 99.6 8.5E-15 2.9E-19 134.4 10.5 80 283-365 13-92 (95)
100 2dgv_A HnRNP M, heterogeneous 99.6 1.1E-14 3.9E-19 132.8 11.2 83 282-368 4-86 (92)
101 3ucg_A Polyadenylate-binding p 99.6 1.1E-14 3.7E-19 131.9 11.0 79 286-367 6-84 (89)
102 2d9p_A Polyadenylate-binding p 99.6 1.1E-14 3.9E-19 135.8 11.4 80 284-367 13-92 (103)
103 2cph_A RNA binding motif prote 99.6 1.4E-14 4.8E-19 136.0 12.1 86 445-532 13-100 (107)
104 3s7r_A Heterogeneous nuclear r 99.6 1.1E-14 3.8E-19 131.5 11.0 81 282-365 7-87 (87)
105 3r27_A HnRNP L, heterogeneous 99.6 9.1E-15 3.1E-19 135.8 10.5 79 445-529 19-97 (100)
106 2dnh_A Bruno-like 5, RNA bindi 99.6 2.3E-14 7.8E-19 134.2 13.3 84 445-531 13-99 (105)
107 3p5t_L Cleavage and polyadenyl 99.6 2.5E-15 8.6E-20 137.0 6.6 82 448-531 2-85 (90)
108 2la6_A RNA-binding protein FUS 99.6 1.4E-14 4.7E-19 134.3 11.5 81 445-527 11-99 (99)
109 2cpe_A RNA-binding protein EWS 99.6 1.5E-14 5.3E-19 137.3 12.1 86 445-532 13-106 (113)
110 2dhg_A TRNA selenocysteine ass 99.6 9.5E-15 3.3E-19 136.5 10.4 83 282-367 5-89 (104)
111 2jrs_A RNA-binding protein 39; 99.6 1.2E-14 4.2E-19 137.3 11.2 83 445-529 24-106 (108)
112 3ex7_B RNA-binding protein 8A; 99.6 8.9E-15 3E-19 141.7 10.4 84 281-366 17-100 (126)
113 2fy1_A RNA-binding motif prote 99.6 1.2E-14 4.2E-19 139.1 11.3 85 446-533 6-90 (116)
114 2khc_A Testis-specific RNP-typ 99.6 7E-15 2.4E-19 140.8 9.6 81 283-365 37-117 (118)
115 1wi8_A EIF-4B, eukaryotic tran 99.6 2.1E-14 7.1E-19 134.4 12.5 85 445-533 13-98 (104)
116 1x4e_A RNA binding motif, sing 99.6 2.7E-15 9.4E-20 134.9 6.2 81 283-365 2-82 (85)
117 1p1t_A Cleavage stimulation fa 99.6 4.7E-15 1.6E-19 138.5 7.8 80 285-366 7-86 (104)
118 3ulh_A THO complex subunit 4; 99.6 2.2E-14 7.4E-19 134.8 12.4 81 445-528 27-107 (107)
119 2cqi_A Nucleolysin TIAR; RNA r 99.6 3.2E-14 1.1E-18 132.8 13.5 83 282-368 11-93 (103)
120 2dgp_A Bruno-like 4, RNA bindi 99.6 1.5E-14 5E-19 135.7 11.2 88 445-532 11-99 (106)
121 1s79_A Lupus LA protein; RRM, 99.6 6.3E-15 2.2E-19 138.2 8.7 78 284-365 9-86 (103)
122 2dgx_A KIAA0430 protein; RRM d 99.6 2.1E-14 7.3E-19 132.5 12.1 80 283-367 6-89 (96)
123 1u6f_A Tcubp1, RNA-binding pro 99.6 2.9E-14 9.9E-19 140.5 13.9 86 445-532 40-125 (139)
124 2d9p_A Polyadenylate-binding p 99.6 2.1E-14 7.2E-19 134.0 12.2 84 446-533 14-97 (103)
125 2cqi_A Nucleolysin TIAR; RNA r 99.6 4.1E-14 1.4E-18 132.0 14.1 85 445-533 13-97 (103)
126 2mss_A Protein (musashi1); RNA 99.5 5.6E-15 1.9E-19 129.5 7.7 75 288-365 1-75 (75)
127 1u6f_A Tcubp1, RNA-binding pro 99.5 2.1E-14 7E-19 141.6 12.7 83 283-367 39-121 (139)
128 2cqd_A RNA-binding region cont 99.5 2.2E-14 7.4E-19 137.0 12.3 81 283-366 14-94 (116)
129 3n9u_C Cleavage and polyadenyl 99.5 1.1E-14 3.9E-19 146.8 10.9 80 285-366 54-135 (156)
130 3ex7_B RNA-binding protein 8A; 99.5 1.1E-14 3.8E-19 141.1 10.3 86 446-533 21-106 (126)
131 3lqv_A PRE-mRNA branch site pr 99.5 7.8E-15 2.7E-19 139.8 9.1 79 282-365 4-82 (115)
132 3r27_A HnRNP L, heterogeneous 99.5 1.8E-14 6.3E-19 133.7 11.3 80 281-366 16-95 (100)
133 2cqd_A RNA-binding region cont 99.5 2.8E-14 9.6E-19 136.2 13.0 86 444-532 14-99 (116)
134 2cq3_A RNA-binding protein 9; 99.5 3.6E-14 1.2E-18 132.4 13.3 82 282-367 11-92 (103)
135 2ywk_A Putative RNA-binding pr 99.5 1.9E-14 6.6E-19 132.0 11.3 81 445-528 14-94 (95)
136 2ek1_A RNA-binding protein 12; 99.5 5.7E-15 2E-19 135.6 7.6 80 284-365 13-92 (95)
137 2wbr_A GW182, gawky, LD47780P; 99.5 1.8E-14 6.1E-19 129.6 10.4 74 284-365 5-78 (89)
138 4f25_A Polyadenylate-binding p 99.5 1.9E-14 6.5E-19 137.5 11.4 80 447-530 5-84 (115)
139 2khc_A Testis-specific RNP-typ 99.5 3.3E-14 1.1E-18 136.0 13.0 82 444-527 37-118 (118)
140 2m2b_A RNA-binding protein 10; 99.5 6.8E-15 2.3E-19 143.9 8.3 82 283-367 20-107 (131)
141 2cq3_A RNA-binding protein 9; 99.5 6.1E-14 2.1E-18 130.9 14.4 85 445-533 13-97 (103)
142 2dgx_A KIAA0430 protein; RRM d 99.5 2.8E-14 9.7E-19 131.6 11.9 82 446-532 8-93 (96)
143 1h2v_Z 20 kDa nuclear CAP bind 99.5 2.3E-14 8E-19 144.2 12.4 84 282-367 35-118 (156)
144 2dgv_A HnRNP M, heterogeneous 99.5 2E-14 6.7E-19 131.2 10.7 84 446-533 7-90 (92)
145 2cqp_A RNA-binding protein 12; 99.5 2.5E-14 8.5E-19 132.2 11.4 82 446-529 14-95 (98)
146 2do0_A HnRNP M, heterogeneous 99.5 3.9E-14 1.3E-18 134.6 13.1 82 282-366 11-92 (114)
147 2dh8_A DAZ-associated protein 99.5 2.2E-14 7.6E-19 134.3 11.2 82 283-367 13-94 (105)
148 4a8x_A RNA-binding protein wit 99.5 2.1E-14 7.2E-19 129.6 10.6 81 447-529 4-85 (88)
149 2dh8_A DAZ-associated protein 99.5 2.2E-14 7.5E-19 134.3 11.0 86 444-532 13-98 (105)
150 2dgw_A Probable RNA-binding pr 99.5 5.1E-14 1.8E-18 128.3 13.2 80 446-530 9-88 (91)
151 2cph_A RNA binding motif prote 99.5 2.5E-14 8.6E-19 134.2 11.4 85 282-367 11-96 (107)
152 2cq1_A PTB-like protein L; RRM 99.5 2.4E-14 8.2E-19 133.7 11.1 80 282-367 11-90 (101)
153 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 3.4E-14 1.2E-18 139.8 12.7 81 444-526 60-140 (140)
154 2kt5_A RNA and export factor-b 99.5 3.6E-14 1.2E-18 137.2 12.3 82 283-367 32-113 (124)
155 3ucg_A Polyadenylate-binding p 99.5 2.4E-14 8.1E-19 129.7 10.4 80 447-529 6-85 (89)
156 1h2v_Z 20 kDa nuclear CAP bind 99.5 4.8E-14 1.7E-18 141.9 13.6 84 446-531 38-121 (156)
157 2cq4_A RNA binding motif prote 99.5 1.7E-14 6E-19 137.2 9.8 78 286-366 25-102 (114)
158 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 2.6E-14 8.9E-19 140.6 11.4 81 283-365 60-140 (140)
159 2rs2_A Musashi-1, RNA-binding 99.5 2.9E-14 9.8E-19 135.0 11.2 82 282-366 21-102 (109)
160 2dhg_A TRNA selenocysteine ass 99.5 2.2E-14 7.6E-19 134.0 10.3 84 445-531 7-92 (104)
161 2hvz_A Splicing factor, argini 99.5 1.7E-14 5.7E-19 134.2 9.4 73 287-366 1-73 (101)
162 1uaw_A Mouse-musashi-1; RNP-ty 99.5 8.5E-15 2.9E-19 128.9 6.9 76 287-365 1-76 (77)
163 2dgw_A Probable RNA-binding pr 99.5 4.4E-14 1.5E-18 128.8 11.8 80 283-367 7-86 (91)
164 2ek1_A RNA-binding protein 12; 99.5 1.7E-14 5.8E-19 132.4 8.9 81 446-528 14-94 (95)
165 2cqg_A TDP-43, TAR DNA-binding 99.5 7.1E-14 2.4E-18 130.4 13.2 81 283-367 12-92 (103)
166 2dis_A Unnamed protein product 99.5 2.1E-14 7.3E-19 135.3 9.6 82 283-366 5-90 (109)
167 1wex_A Hypothetical protein (r 99.5 4E-14 1.4E-18 132.9 11.4 81 445-531 13-93 (104)
168 2kxn_B Transformer-2 protein h 99.5 1.6E-14 5.5E-19 141.0 9.0 85 444-530 43-127 (129)
169 1x4a_A Splicing factor, argini 99.5 7.4E-14 2.5E-18 131.8 13.1 80 283-367 19-98 (109)
170 3n9u_C Cleavage and polyadenyl 99.5 2.9E-14 9.8E-19 143.9 11.0 82 446-529 54-137 (156)
171 2cqg_A TDP-43, TAR DNA-binding 99.5 1.3E-13 4.3E-18 128.7 14.6 85 445-533 13-97 (103)
172 1x4d_A Matrin 3; structural ge 99.5 3.3E-14 1.1E-18 132.9 10.5 80 445-530 13-93 (102)
173 1wez_A HnRNP H', FTP-3, hetero 99.5 2E-14 6.8E-19 134.5 8.9 81 283-368 12-92 (102)
174 2m2b_A RNA-binding protein 10; 99.5 1.3E-14 4.6E-19 141.8 8.1 84 445-531 21-110 (131)
175 1x4a_A Splicing factor, argini 99.5 9.5E-14 3.2E-18 131.0 13.6 84 445-533 20-103 (109)
176 3s7r_A Heterogeneous nuclear r 99.5 6.7E-14 2.3E-18 126.3 12.0 78 446-526 10-87 (87)
177 2cpi_A CCR4-NOT transcription 99.5 3.1E-14 1.1E-18 135.1 10.2 84 446-531 14-103 (111)
178 2do0_A HnRNP M, heterogeneous 99.5 1.1E-13 3.8E-18 131.4 14.0 82 445-529 13-94 (114)
179 1rk8_A CG8781-PA, CG8781-PA pr 99.5 3.9E-14 1.3E-18 144.1 11.5 82 283-366 69-150 (165)
180 1sjq_A Polypyrimidine tract-bi 99.5 1.6E-14 5.6E-19 135.3 7.9 78 446-531 15-94 (105)
181 2ad9_A Polypyrimidine tract-bi 99.5 3.7E-14 1.3E-18 136.1 10.5 79 282-366 27-105 (119)
182 1wex_A Hypothetical protein (r 99.5 4.9E-14 1.7E-18 132.3 11.0 80 282-367 11-90 (104)
183 2wbr_A GW182, gawky, LD47780P; 99.5 2.7E-14 9.1E-19 128.5 8.7 73 447-527 7-79 (89)
184 1p1t_A Cleavage stimulation fa 99.5 2.2E-14 7.7E-19 133.9 8.6 82 446-529 7-88 (104)
185 1wel_A RNA-binding protein 12; 99.5 8.9E-15 3E-19 141.6 5.8 80 284-366 23-102 (124)
186 2fc8_A NCL protein; structure 99.5 1E-13 3.5E-18 129.0 12.7 85 445-534 13-97 (102)
187 2j76_E EIF-4B, EIF4B, eukaryot 99.5 1.6E-14 5.4E-19 134.4 7.2 81 282-366 15-96 (100)
188 2fc9_A NCL protein; structure 99.5 7.3E-14 2.5E-18 129.8 11.6 81 282-368 11-91 (101)
189 2kn4_A Immunoglobulin G-bindin 99.5 6E-14 2.1E-18 141.2 11.8 82 284-367 68-149 (158)
190 2cq1_A PTB-like protein L; RRM 99.5 6.8E-14 2.3E-18 130.6 11.2 79 445-531 13-93 (101)
191 2fc9_A NCL protein; structure 99.5 1.1E-13 3.8E-18 128.6 12.6 84 444-533 12-95 (101)
192 1x4b_A Heterogeneous nuclear r 99.5 4.9E-14 1.7E-18 134.5 10.5 84 446-532 26-109 (116)
193 2jwn_A Embryonic polyadenylate 99.5 4.5E-14 1.5E-18 136.4 10.3 79 286-367 36-114 (124)
194 1x5o_A RNA binding motif, sing 99.5 4.9E-14 1.7E-18 134.0 10.4 80 284-366 23-110 (114)
195 2cq4_A RNA binding motif prote 99.5 2.7E-14 9.3E-19 135.8 8.7 81 446-529 24-104 (114)
196 2nlw_A Eukaryotic translation 99.5 4.2E-14 1.4E-18 132.8 9.7 80 283-366 12-98 (105)
197 2cpi_A CCR4-NOT transcription 99.5 4.8E-14 1.6E-18 133.7 10.1 81 284-366 13-99 (111)
198 2ki2_A SS-DNA binding protein 99.5 9E-15 3.1E-19 132.9 4.9 78 287-367 2-79 (90)
199 1x4b_A Heterogeneous nuclear r 99.5 7.6E-14 2.6E-18 133.2 11.5 79 286-367 27-105 (116)
200 2kt5_A RNA and export factor-b 99.5 9.3E-14 3.2E-18 134.3 12.1 84 445-531 33-116 (124)
201 1x4d_A Matrin 3; structural ge 99.5 4.3E-14 1.5E-18 132.1 9.3 78 283-366 12-90 (102)
202 2dnq_A RNA-binding protein 4B; 99.5 1.2E-13 3.9E-18 125.8 11.9 76 283-368 5-80 (90)
203 2lea_A Serine/arginine-rich sp 99.5 2.5E-14 8.5E-19 140.8 7.9 82 284-367 45-126 (135)
204 1x4e_A RNA binding motif, sing 99.5 8.5E-15 2.9E-19 131.7 4.1 80 446-527 4-83 (85)
205 2a3j_A U1 small nuclear ribonu 99.5 6.5E-14 2.2E-18 136.3 10.7 81 282-367 25-109 (127)
206 2cpy_A RNA-binding protein 12; 99.5 3.5E-14 1.2E-18 135.3 8.6 80 283-366 12-92 (114)
207 2krb_A Eukaryotic translation 99.5 2.4E-14 8.1E-19 127.8 6.9 74 286-363 1-81 (81)
208 1iqt_A AUF1, heterogeneous nuc 99.5 2.2E-14 7.5E-19 125.7 6.5 75 288-365 1-75 (75)
209 1s79_A Lupus LA protein; RRM, 99.5 2.8E-14 9.6E-19 133.8 7.7 79 446-528 10-88 (103)
210 2err_A Ataxin-2-binding protei 99.5 7.4E-14 2.5E-18 132.1 10.6 81 282-366 25-105 (109)
211 2fc8_A NCL protein; structure 99.5 1E-13 3.4E-18 129.0 11.4 81 283-368 12-92 (102)
212 2db1_A Heterogeneous nuclear r 99.5 4E-14 1.4E-18 135.9 8.7 78 284-365 15-95 (118)
213 2ad9_A Polypyrimidine tract-bi 99.5 3.9E-14 1.3E-18 135.9 8.6 81 445-531 29-109 (119)
214 2cpx_A Hypothetical protein FL 99.5 2.7E-14 9.3E-19 135.9 7.4 85 282-368 21-105 (115)
215 1wez_A HnRNP H', FTP-3, hetero 99.5 6.5E-14 2.2E-18 131.0 9.7 84 445-533 13-96 (102)
216 2dis_A Unnamed protein product 99.5 5.1E-14 1.7E-18 132.7 9.0 85 446-532 7-95 (109)
217 2mss_A Protein (musashi1); RNA 99.5 2.7E-14 9.1E-19 125.2 6.4 75 449-526 1-75 (75)
218 2jwn_A Embryonic polyadenylate 99.5 9.3E-14 3.2E-18 134.1 10.7 82 447-531 36-117 (124)
219 2dgt_A RNA-binding protein 30; 99.5 2.9E-13 1E-17 123.6 13.1 79 445-533 8-86 (92)
220 1fj7_A Nucleolin RBD1, protein 99.5 1.7E-14 5.9E-19 134.1 4.9 80 284-367 15-94 (101)
221 2rs2_A Musashi-1, RNA-binding 99.5 9.8E-14 3.3E-18 131.3 10.1 82 446-530 24-105 (109)
222 1why_A Hypothetical protein ri 99.5 1.6E-13 5.6E-18 126.6 11.3 79 445-531 15-95 (97)
223 1x4f_A Matrin 3; structural ge 99.5 5E-14 1.7E-18 133.7 8.0 79 283-367 22-101 (112)
224 2hgl_A HNRPF protein, heteroge 99.5 5.7E-14 1.9E-18 138.3 8.6 78 284-365 42-122 (136)
225 2err_A Ataxin-2-binding protei 99.5 1.2E-13 4.2E-18 130.5 10.5 80 446-529 28-107 (109)
226 2jvr_A Nucleolar protein 3; RN 99.5 1E-13 3.5E-18 131.6 10.0 78 284-367 26-104 (111)
227 2cpy_A RNA-binding protein 12; 99.5 8.5E-14 2.9E-18 132.7 9.4 81 445-529 13-94 (114)
228 1why_A Hypothetical protein ri 99.5 1.5E-13 5.3E-18 126.7 10.9 77 283-367 14-92 (97)
229 1wg5_A Heterogeneous nuclear r 99.5 1E-13 3.6E-18 129.9 9.7 79 284-366 13-92 (104)
230 1nu4_A U1A RNA binding domain; 99.5 7.2E-14 2.5E-18 128.7 8.4 80 283-367 5-88 (97)
231 2a3j_A U1 small nuclear ribonu 99.5 8.9E-14 3E-18 135.3 9.5 80 445-529 27-110 (127)
232 1x4c_A Splicing factor, argini 99.5 2.3E-13 7.9E-18 128.3 12.0 75 284-367 13-92 (108)
233 3q2s_C Cleavage and polyadenyl 99.5 5.5E-14 1.9E-18 150.8 8.7 80 285-366 67-148 (229)
234 2dnq_A RNA-binding protein 4B; 99.5 1.8E-13 6.1E-18 124.5 10.7 78 446-533 7-84 (90)
235 2ki2_A SS-DNA binding protein 99.5 1.9E-14 6.4E-19 130.8 4.2 81 448-531 2-82 (90)
236 2nlw_A Eukaryotic translation 99.5 1.2E-13 4.2E-18 129.6 9.7 80 446-529 14-100 (105)
237 1x5o_A RNA binding motif, sing 99.5 3.5E-13 1.2E-17 128.0 12.9 84 445-529 23-112 (114)
238 2j76_E EIF-4B, EIF4B, eukaryot 99.5 3.7E-14 1.3E-18 131.9 5.9 80 446-529 18-98 (100)
239 2db1_A Heterogeneous nuclear r 99.5 1.8E-13 6.1E-18 131.4 10.8 80 446-529 16-98 (118)
240 1x4c_A Splicing factor, argini 99.5 4.8E-13 1.6E-17 126.2 13.4 77 446-531 14-95 (108)
241 1x4g_A Nucleolysin TIAR; struc 99.5 3.5E-13 1.2E-17 127.2 12.0 78 282-367 21-98 (109)
242 2cpj_A Non-POU domain-containi 99.5 2.1E-13 7.2E-18 126.3 10.3 77 283-367 12-88 (99)
243 1uaw_A Mouse-musashi-1; RNP-ty 99.5 5.2E-14 1.8E-18 123.8 5.9 75 449-526 2-76 (77)
244 2cpx_A Hypothetical protein FL 99.4 8.1E-14 2.8E-18 132.6 7.4 86 445-532 23-108 (115)
245 2dnn_A RNA-binding protein 12; 99.4 2.2E-13 7.5E-18 129.0 10.2 75 286-365 16-90 (109)
246 2lmi_A GRSF-1, G-rich sequence 99.4 5.1E-14 1.7E-18 132.7 5.8 79 283-365 8-89 (107)
247 1wel_A RNA-binding protein 12; 99.4 6.8E-14 2.3E-18 135.4 6.7 81 446-529 24-104 (124)
248 2dnp_A RNA-binding protein 14; 99.4 5E-13 1.7E-17 121.5 11.9 75 283-367 6-80 (90)
249 1fj7_A Nucleolin RBD1, protein 99.4 4.5E-14 1.5E-18 131.3 5.0 82 446-531 16-97 (101)
250 2dgt_A RNA-binding protein 30; 99.4 6.5E-13 2.2E-17 121.3 12.5 76 282-367 6-81 (92)
251 2dnp_A RNA-binding protein 14; 99.4 4.7E-13 1.6E-17 121.7 11.5 77 446-532 8-84 (90)
252 1nu4_A U1A RNA binding domain; 99.4 1.4E-13 4.9E-18 126.7 8.1 80 445-529 6-89 (97)
253 2la4_A Nuclear and cytoplasmic 99.4 2.6E-13 8.9E-18 126.1 10.0 75 283-365 24-98 (101)
254 2jvo_A Nucleolar protein 3; nu 99.4 3.2E-13 1.1E-17 127.6 10.6 77 281-367 26-102 (108)
255 1wg5_A Heterogeneous nuclear r 99.4 3.3E-13 1.1E-17 126.4 10.7 80 446-529 14-94 (104)
256 2j8a_A Histone-lysine N-methyl 99.4 1.6E-13 5.4E-18 131.4 8.5 76 287-364 3-92 (136)
257 3q2s_C Cleavage and polyadenyl 99.4 1.2E-13 3.9E-18 148.3 8.5 82 446-529 67-150 (229)
258 1x4f_A Matrin 3; structural ge 99.4 1E-13 3.6E-18 131.5 7.2 81 445-531 23-104 (112)
259 2xnq_A Nuclear polyadenylated 99.4 4.6E-13 1.6E-17 123.9 11.3 76 281-366 17-93 (97)
260 2e5j_A Methenyltetrahydrofolat 99.4 2.9E-13 9.9E-18 124.9 9.9 78 283-367 16-93 (97)
261 1fjc_A Nucleolin RBD2, protein 99.4 1.8E-13 6.1E-18 125.9 8.5 77 284-367 14-90 (96)
262 1x4g_A Nucleolysin TIAR; struc 99.4 4.3E-13 1.5E-17 126.6 11.3 79 446-532 24-102 (109)
263 2cpj_A Non-POU domain-containi 99.4 4.4E-13 1.5E-17 124.1 11.1 79 445-531 13-91 (99)
264 2cpd_A Apobec-1 stimulating pr 99.4 8E-13 2.7E-17 122.4 12.6 76 282-367 11-88 (99)
265 2hgl_A HNRPF protein, heteroge 99.4 1.9E-13 6.4E-18 134.6 8.7 79 446-528 43-124 (136)
266 1wf1_A RNA-binding protein RAL 99.4 4.4E-13 1.5E-17 126.7 10.9 76 283-368 24-100 (110)
267 2lcw_A RNA-binding protein FUS 99.1 1.2E-14 4E-19 139.0 0.0 85 446-532 6-98 (116)
268 1fjc_A Nucleolin RBD2, protein 99.4 4.5E-13 1.5E-17 123.2 10.5 79 446-531 15-93 (96)
269 2cpd_A Apobec-1 stimulating pr 99.4 1.2E-12 4.3E-17 121.1 13.5 78 445-532 13-92 (99)
270 2lcw_A RNA-binding protein FUS 99.1 1.3E-14 4.4E-19 138.6 0.0 83 283-367 4-94 (116)
271 2ytc_A PRE-mRNA-splicing facto 99.4 4.8E-13 1.6E-17 120.0 10.2 74 446-527 11-85 (85)
272 2dnn_A RNA-binding protein 12; 99.4 4E-13 1.4E-17 127.2 10.1 77 447-528 16-92 (109)
273 2krb_A Eukaryotic translation 99.4 1E-13 3.6E-18 123.5 5.7 72 448-523 2-80 (81)
274 2cqh_A IGF-II mRNA-binding pro 99.4 4.3E-13 1.5E-17 122.6 9.8 76 283-367 5-82 (93)
275 2pe8_A Splicing factor 45; RRM 99.4 6.6E-13 2.3E-17 124.8 11.0 81 446-528 7-93 (105)
276 2dgu_A Heterogeneous nuclear r 99.4 1.1E-12 3.9E-17 122.3 12.5 76 283-368 8-83 (103)
277 2hgn_A Heterogeneous nuclear r 99.4 9.8E-14 3.4E-18 137.1 5.4 79 284-367 44-122 (139)
278 2ytc_A PRE-mRNA-splicing facto 99.4 6.9E-13 2.4E-17 119.0 10.3 76 283-365 9-84 (85)
279 3md3_A Nuclear and cytoplasmic 99.4 7E-13 2.4E-17 133.0 11.6 82 283-366 84-165 (166)
280 2jvr_A Nucleolar protein 3; RN 99.4 4.2E-13 1.4E-17 127.4 9.3 78 446-529 27-105 (111)
281 2cqh_A IGF-II mRNA-binding pro 99.4 6.6E-13 2.3E-17 121.4 10.3 78 446-532 7-86 (93)
282 3lqv_A PRE-mRNA branch site pr 99.4 4.4E-13 1.5E-17 127.6 9.4 79 446-529 7-85 (115)
283 4f02_A Polyadenylate-binding p 99.4 7.3E-13 2.5E-17 140.1 12.0 83 445-529 13-95 (213)
284 2e5j_A Methenyltetrahydrofolat 99.4 5.9E-13 2E-17 122.9 9.9 78 446-530 18-95 (97)
285 2hvz_A Splicing factor, argini 99.4 3.2E-13 1.1E-17 125.5 8.1 77 448-531 1-77 (101)
286 3pgw_S U1-70K; protein-RNA com 99.4 3.9E-13 1.3E-17 157.3 10.7 81 284-366 100-180 (437)
287 3egn_A RNA-binding protein 40; 99.4 1.7E-13 5.8E-18 135.8 6.5 84 281-366 40-128 (143)
288 1whx_A Hypothetical protein ri 99.4 3.5E-13 1.2E-17 127.9 8.4 74 285-366 9-82 (111)
289 2la4_A Nuclear and cytoplasmic 99.4 3.5E-13 1.2E-17 125.2 8.3 76 446-529 26-101 (101)
290 2dgu_A Heterogeneous nuclear r 99.4 1.4E-12 4.9E-17 121.7 12.4 77 445-531 9-85 (103)
291 2kvi_A Nuclear polyadenylated 99.4 4E-13 1.4E-17 123.8 8.4 75 282-366 6-81 (96)
292 1iqt_A AUF1, heterogeneous nuc 99.4 1.2E-13 4.2E-18 120.9 4.7 75 449-526 1-75 (75)
293 2jvo_A Nucleolar protein 3; nu 99.4 6.2E-13 2.1E-17 125.6 9.9 76 445-530 29-104 (108)
294 2xs2_A Deleted in azoospermia- 99.4 2.1E-13 7.2E-18 126.9 6.6 78 284-366 7-84 (102)
295 2xnq_A Nuclear polyadenylated 99.4 1E-12 3.5E-17 121.5 11.1 74 446-529 21-95 (97)
296 2hgm_A HNRPF protein, heteroge 99.4 3E-13 1E-17 131.2 7.7 78 283-365 39-118 (126)
297 2f3j_A RNA and export factor b 99.4 4.7E-13 1.6E-17 137.8 9.6 81 446-529 87-167 (177)
298 1wf1_A RNA-binding protein RAL 99.4 1.4E-12 4.8E-17 123.2 11.9 76 446-531 26-102 (110)
299 2dha_A FLJ20171 protein; RRM d 99.4 3.3E-13 1.1E-17 130.5 7.6 78 284-365 21-102 (123)
300 2lmi_A GRSF-1, G-rich sequence 99.4 1.7E-13 5.7E-18 129.1 5.4 80 446-529 10-92 (107)
301 2kvi_A Nuclear polyadenylated 99.4 4.4E-13 1.5E-17 123.5 8.0 79 445-533 8-87 (96)
302 2i2y_A Fusion protein consists 99.4 6.6E-13 2.3E-17 132.6 9.7 78 282-366 69-146 (150)
303 2xs2_A Deleted in azoospermia- 99.4 5.2E-13 1.8E-17 124.2 8.3 80 446-530 8-87 (102)
304 1whx_A Hypothetical protein ri 99.4 3.9E-13 1.3E-17 127.6 7.3 75 447-529 10-84 (111)
305 3d2w_A TAR DNA-binding protein 99.4 1.1E-12 3.7E-17 119.5 10.0 75 446-529 10-84 (89)
306 1fxl_A Paraneoplastic encephal 99.4 1.5E-12 5.2E-17 130.7 12.1 81 447-529 2-82 (167)
307 1wg1_A KIAA1579 protein, homol 99.4 8.3E-13 2.9E-17 119.7 9.2 73 284-365 3-75 (88)
308 2qfj_A FBP-interacting repress 99.4 1.3E-12 4.3E-17 137.5 11.8 83 284-368 123-205 (216)
309 1b7f_A Protein (SXL-lethal pro 99.4 1.2E-12 4E-17 132.0 10.9 82 446-529 2-83 (168)
310 2g4b_A Splicing factor U2AF 65 99.4 1.2E-12 4E-17 132.6 10.7 80 284-365 92-171 (172)
311 3egn_A RNA-binding protein 40; 99.4 4E-13 1.4E-17 133.1 7.0 84 445-530 43-131 (143)
312 1x5p_A Negative elongation fac 99.4 2.9E-12 9.9E-17 118.2 12.2 74 284-367 13-86 (97)
313 2diu_A KIAA0430 protein; struc 99.4 1.3E-12 4.6E-17 118.5 9.6 74 283-368 5-84 (96)
314 2e5g_A U6 snRNA-specific termi 99.4 1.9E-12 6.6E-17 118.7 10.8 75 284-366 6-80 (94)
315 2dnl_A Cytoplasmic polyadenyla 99.4 9.4E-13 3.2E-17 125.4 8.6 78 283-365 5-85 (114)
316 2e44_A Insulin-like growth fac 99.4 1.1E-12 3.8E-17 120.5 8.8 77 284-366 13-90 (96)
317 1sjr_A Polypyrimidine tract-bi 99.4 1.5E-12 5.2E-17 131.2 10.2 80 447-530 46-125 (164)
318 2cq2_A Hypothetical protein LO 99.4 1E-12 3.5E-17 124.9 8.4 77 282-366 21-104 (114)
319 1x5p_A Negative elongation fac 99.4 5.4E-12 1.8E-16 116.4 13.0 76 446-531 14-89 (97)
320 3zzy_A Polypyrimidine tract-bi 99.4 2.2E-12 7.4E-17 125.4 10.7 78 448-530 29-107 (130)
321 2hzc_A Splicing factor U2AF 65 99.4 1.6E-12 5.3E-17 117.1 8.9 73 283-364 3-86 (87)
322 2yh0_A Splicing factor U2AF 65 99.3 2.7E-12 9.4E-17 133.0 11.8 81 284-366 112-192 (198)
323 2j8a_A Histone-lysine N-methyl 99.3 1.5E-12 5.3E-17 124.6 9.0 78 448-527 3-94 (136)
324 2cq2_A Hypothetical protein LO 99.3 1.6E-12 5.4E-17 123.6 9.0 78 446-529 24-106 (114)
325 2e44_A Insulin-like growth fac 99.3 2E-12 6.9E-17 118.8 9.4 78 446-529 14-92 (96)
326 2dha_A FLJ20171 protein; RRM d 99.3 8.3E-13 2.8E-17 127.7 7.1 79 446-528 22-104 (123)
327 2pe8_A Splicing factor 45; RRM 99.3 3.8E-12 1.3E-16 119.6 11.0 81 283-365 5-91 (105)
328 1wf0_A TDP-43, TAR DNA-binding 99.3 1.9E-12 6.6E-17 117.1 8.6 75 284-367 3-77 (88)
329 1wg1_A KIAA1579 protein, homol 99.3 2.6E-12 8.8E-17 116.4 9.3 75 446-529 4-78 (88)
330 3beg_B Splicing factor, argini 99.3 1.3E-12 4.4E-17 124.7 7.4 72 285-365 15-91 (115)
331 2diu_A KIAA0430 protein; struc 99.3 2.2E-12 7.6E-17 117.1 8.3 74 446-531 7-86 (96)
332 2cjk_A Nuclear polyadenylated 99.3 1.6E-12 5.6E-17 130.9 8.3 79 285-366 86-164 (167)
333 2hgm_A HNRPF protein, heteroge 99.3 1.1E-12 3.8E-17 127.2 6.7 78 446-528 41-120 (126)
334 3zzy_A Polypyrimidine tract-bi 99.3 4.5E-12 1.5E-16 123.2 10.9 73 287-366 29-104 (130)
335 3d2w_A TAR DNA-binding protein 99.3 3.7E-12 1.3E-16 115.9 9.8 76 282-366 7-82 (89)
336 2hgn_A Heterogeneous nuclear r 99.3 3.8E-13 1.3E-17 132.9 3.4 81 446-531 45-125 (139)
337 1wf0_A TDP-43, TAR DNA-binding 99.3 4.4E-12 1.5E-16 114.7 9.5 78 446-532 4-81 (88)
338 1sjr_A Polypyrimidine tract-bi 99.3 4.7E-12 1.6E-16 127.6 10.6 75 286-366 46-122 (164)
339 2e5g_A U6 snRNA-specific termi 99.3 6.6E-12 2.3E-16 115.1 10.4 78 446-531 7-84 (94)
340 1l3k_A Heterogeneous nuclear r 99.3 6E-12 2.1E-16 130.2 11.4 81 446-529 12-92 (196)
341 2e5i_A Heterogeneous nuclear r 99.3 8.6E-12 3E-16 120.5 11.6 76 449-530 27-103 (124)
342 3v4m_A Splicing factor U2AF 65 99.3 5E-12 1.7E-16 118.8 9.3 81 446-528 4-96 (105)
343 3ue2_A Poly(U)-binding-splicin 99.3 7.1E-12 2.4E-16 120.2 10.5 81 446-528 19-108 (118)
344 3beg_B Splicing factor, argini 99.3 3.5E-12 1.2E-16 121.8 8.1 74 447-529 16-94 (115)
345 2e5i_A Heterogeneous nuclear r 99.3 1.2E-11 4.2E-16 119.5 11.1 72 287-366 26-100 (124)
346 2dnl_A Cytoplasmic polyadenyla 99.3 6.3E-12 2.2E-16 119.7 9.0 77 446-527 7-86 (114)
347 2bz2_A Negative elongation fac 99.3 8.4E-12 2.9E-16 120.3 9.5 75 283-367 36-110 (121)
348 3tyt_A Heterogeneous nuclear r 99.3 7.5E-12 2.6E-16 131.8 9.9 77 446-529 3-80 (205)
349 3nmr_A Cugbp ELAV-like family 99.3 1E-11 3.6E-16 125.7 10.3 79 284-365 93-174 (175)
350 2dit_A HIV TAT specific factor 99.3 2.5E-11 8.4E-16 115.2 11.9 81 444-530 12-103 (112)
351 2hzc_A Splicing factor U2AF 65 99.2 1.5E-11 5.2E-16 110.6 8.6 71 446-525 5-86 (87)
352 2bz2_A Negative elongation fac 99.2 1.4E-11 4.9E-16 118.7 8.9 75 446-530 38-112 (121)
353 3u1l_A PRE-mRNA-splicing facto 99.2 1.1E-11 3.9E-16 132.7 8.6 83 445-533 132-233 (240)
354 2voo_A Lupus LA protein; RNA-b 99.2 2.1E-11 7.2E-16 127.2 10.4 76 286-365 109-184 (193)
355 1fje_B Nucleolin RBD12, protei 99.2 2.6E-11 8.9E-16 123.3 9.9 76 284-366 97-172 (175)
356 3pgw_A U1-A; protein-RNA compl 99.2 4E-11 1.4E-15 131.8 11.6 81 445-530 7-91 (282)
357 2dit_A HIV TAT specific factor 99.2 6.8E-11 2.3E-15 112.1 10.7 78 283-366 12-100 (112)
358 2voo_A Lupus LA protein; RNA-b 99.2 5.2E-11 1.8E-15 124.2 10.5 79 447-529 109-187 (193)
359 3s6e_A RNA-binding protein 39; 99.2 6.8E-11 2.3E-15 112.6 10.0 79 444-528 4-92 (114)
360 1jmt_A Splicing factor U2AF 35 99.2 3.4E-11 1.2E-15 112.9 7.8 70 454-526 22-103 (104)
361 3v4m_A Splicing factor U2AF 65 99.2 6.3E-11 2.1E-15 111.3 9.3 80 284-365 3-94 (105)
362 3u1l_A PRE-mRNA-splicing facto 99.2 4.2E-11 1.4E-15 128.4 8.7 75 284-366 132-227 (240)
363 2adc_A Polypyrimidine tract-bi 99.2 4.1E-11 1.4E-15 128.1 8.5 78 445-529 32-110 (229)
364 3ue2_A Poly(U)-binding-splicin 99.1 1.1E-10 3.8E-15 111.9 9.0 80 284-365 18-106 (118)
365 1qm9_A Polypyrimidine tract-bi 99.1 1.1E-10 3.8E-15 121.3 9.0 76 284-366 118-195 (198)
366 1jmt_A Splicing factor U2AF 35 99.1 4E-11 1.4E-15 112.4 4.7 72 291-365 20-103 (104)
367 3sde_A Paraspeckle component 1 99.0 2.7E-10 9.2E-15 124.2 9.4 82 283-366 93-177 (261)
368 2d9o_A DNAJ (HSP40) homolog, s 99.0 1.7E-09 5.7E-14 100.6 11.3 73 287-368 11-90 (100)
369 3tht_A Alkylated DNA repair pr 99.0 6E-10 2.1E-14 125.5 9.9 79 444-528 15-98 (345)
370 3tht_A Alkylated DNA repair pr 99.0 5.9E-10 2E-14 125.6 9.1 77 281-365 13-96 (345)
371 2d9o_A DNAJ (HSP40) homolog, s 99.0 1.7E-09 5.8E-14 100.5 10.6 76 447-531 10-92 (100)
372 3s6e_A RNA-binding protein 39; 98.9 3E-09 1E-13 101.3 9.8 77 283-365 4-90 (114)
373 1owx_A Lupus LA protein, SS-B, 98.8 1.6E-08 5.6E-13 96.7 8.6 78 282-365 14-93 (121)
374 2dnr_A Synaptojanin-1; RRM dom 98.6 2.5E-07 8.6E-12 83.3 9.7 74 446-530 6-87 (91)
375 1owx_A Lupus LA protein, SS-B, 98.6 1.8E-07 6.2E-12 89.4 9.3 76 445-526 16-93 (121)
376 2dnr_A Synaptojanin-1; RRM dom 98.5 1.6E-07 5.6E-12 84.5 7.8 72 283-365 4-83 (91)
377 3dxb_A Thioredoxin N-terminall 98.5 2.3E-07 7.8E-12 98.4 9.9 80 447-528 124-212 (222)
378 1ufw_A Synaptojanin 2; RNP dom 98.3 5.2E-07 1.8E-11 81.6 6.3 72 282-364 11-91 (95)
379 1ufw_A Synaptojanin 2; RNP dom 98.3 1.6E-06 5.4E-11 78.5 8.0 70 446-526 14-92 (95)
380 3dxb_A Thioredoxin N-terminall 98.3 1.1E-06 3.6E-11 93.2 8.1 79 285-365 123-210 (222)
381 2l9w_A U4/U6 snRNA-associated- 98.0 2.1E-05 7.2E-10 72.5 9.2 72 447-526 21-97 (117)
382 2l9w_A U4/U6 snRNA-associated- 97.9 7E-05 2.4E-09 69.1 10.0 72 285-364 20-96 (117)
383 1wey_A Calcipressin 1; structu 96.9 0.0015 5E-08 60.2 7.0 74 448-529 6-84 (104)
384 1wey_A Calcipressin 1; structu 96.5 0.0051 1.7E-07 56.6 7.1 73 286-366 5-82 (104)
385 1uw4_A UPF3X; nonsense mediate 96.3 0.013 4.6E-07 52.9 8.6 68 448-515 2-71 (91)
386 1uw4_A UPF3X; nonsense mediate 96.2 0.012 4.1E-07 53.2 7.9 68 287-356 2-71 (91)
387 1whv_A Poly(A)-specific ribonu 95.9 0.032 1.1E-06 50.6 9.0 57 445-510 14-70 (100)
388 2dhx_A Poly (ADP-ribose) polym 95.6 0.037 1.3E-06 50.7 8.4 69 285-364 7-80 (104)
389 2k1p_A Zinc finger RAN-binding 95.1 0.015 5E-07 42.3 3.1 30 393-422 3-32 (33)
390 2l08_A Regulator of nonsense t 95.0 0.041 1.4E-06 50.1 6.7 78 286-365 9-93 (97)
391 1wwh_A Nucleoporin 35, nucleop 95.0 0.1 3.4E-06 49.4 9.5 72 447-527 24-95 (119)
392 2l08_A Regulator of nonsense t 94.9 0.042 1.4E-06 50.0 6.2 69 447-515 9-79 (97)
393 2lk0_A RNA-binding protein 5; 94.8 0.0098 3.3E-07 42.9 1.6 29 394-422 3-31 (32)
394 3ctr_A Poly(A)-specific ribonu 94.4 0.048 1.6E-06 49.6 5.3 55 447-510 6-60 (101)
395 1whv_A Poly(A)-specific ribonu 94.3 0.072 2.5E-06 48.3 6.4 53 287-348 17-69 (100)
396 1wwh_A Nucleoporin 35, nucleop 94.2 0.12 4.2E-06 48.7 8.0 70 286-365 24-94 (119)
397 2dhx_A Poly (ADP-ribose) polym 93.7 0.15 5.2E-06 46.7 7.3 68 447-525 8-80 (104)
398 3ctr_A Poly(A)-specific ribonu 93.5 0.078 2.7E-06 48.2 5.0 53 287-348 7-59 (101)
399 1n0z_A ZNF265; zinc finger, RN 93.5 0.072 2.5E-06 41.5 4.2 33 391-423 9-43 (45)
400 3p3d_A Nucleoporin 53; structu 89.8 0.66 2.3E-05 44.4 7.1 77 448-528 8-98 (132)
401 3pq1_A Poly(A) RNA polymerase; 87.1 0.28 9.6E-06 57.0 3.2 55 287-347 54-108 (464)
402 3p3d_A Nucleoporin 53; structu 85.8 0.98 3.4E-05 43.2 5.6 76 286-365 7-96 (132)
403 3pq1_A Poly(A) RNA polymerase; 84.9 0.53 1.8E-05 54.7 4.0 56 447-508 53-108 (464)
404 3d45_A Poly(A)-specific ribonu 62.6 14 0.00046 43.6 8.0 53 287-348 441-493 (507)
405 3d45_A Poly(A)-specific ribonu 61.4 19 0.00066 42.3 9.0 55 447-510 440-494 (507)
406 1e0n_A Hypothetical protein; Y 57.9 4.4 0.00015 27.9 1.6 17 626-642 5-21 (27)
407 2jx8_A Hpcif1, phosphorylated 41.2 13 0.00045 29.6 2.2 18 625-642 18-35 (52)
408 2ebq_A Nuclear pore complex pr 35.5 28 0.00095 27.2 3.1 34 393-426 8-41 (47)
409 4eyt_A Telomerase associated p 31.6 2.6E+02 0.0091 24.5 8.9 70 447-524 12-86 (129)
410 2ebr_A Nuclear pore complex pr 30.1 62 0.0021 25.2 4.3 31 394-424 9-39 (47)
411 4eyt_A Telomerase associated p 29.2 2.9E+02 0.01 24.2 9.5 71 282-364 8-78 (129)
412 3gj8_B Nuclear pore complex pr 27.3 22 0.00077 31.7 1.6 29 393-421 62-90 (92)
413 3gj8_B Nuclear pore complex pr 26.6 14 0.00047 33.1 0.0 29 394-422 6-34 (92)
414 2g0c_A ATP-dependent RNA helic 22.7 1.2E+02 0.0041 25.3 5.3 59 458-527 12-75 (76)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.96 E-value=2.3e-29 Score=267.31 Aligned_cols=171 Identities=26% Similarity=0.421 Sum_probs=151.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEE
Q 043164 282 AVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLF 361 (1049)
Q Consensus 282 ~~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~ 361 (1049)
+..|.++|||+|||+.+||++|+++|+.||+|.+|.|++|+.+|.++|||||+|.+.++|.+||+.| ++..+.|+.|.
T Consensus 11 p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~--~~~~~~g~~i~ 88 (213)
T 4f02_A 11 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM--NFDVIKGKPVR 88 (213)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH--TTCEETTEECE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHh--hhhhcCCcccc
Confidence 3457789999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred EeecCCCCCCCCCCCCccccccccccCCCCCCCCccccccccccccccccccccccCCCCCCCCcccCCCCCCCCCCCCC
Q 043164 362 FEYSSKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKG 441 (1049)
Q Consensus 362 V~~A~~p~~~~~~~~~~~~~~~~~~~~~r~~~p~dw~~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 441 (1049)
|.++..... .
T Consensus 89 ~~~~~~~~~--------------------------~-------------------------------------------- 98 (213)
T 4f02_A 89 IMWSQRDPS--------------------------L-------------------------------------------- 98 (213)
T ss_dssp EEECCCCTH--------------------------H--------------------------------------------
T ss_pred ccccccccc--------------------------c--------------------------------------------
Confidence 998521100 0
Q ss_pred CCCCCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEE
Q 043164 442 SDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQIL 521 (1049)
Q Consensus 442 ~~~~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L 521 (1049)
......+|||+|||..+++++|+++|++||.|..|.|++|. +.++|||||+|.+.++|.+||+.|||..| +|+.|
T Consensus 99 -~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~--~g~~i 173 (213)
T 4f02_A 99 -RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLL--NDRKV 173 (213)
T ss_dssp -HHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEEC
T ss_pred -cccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEE--CCEEE
Confidence 00023589999999999999999999999999999999985 45899999999999999999999999999 79999
Q ss_pred EEEEeecC
Q 043164 522 RVAYAKSI 529 (1049)
Q Consensus 522 ~V~~Ak~k 529 (1049)
.|.||+++
T Consensus 174 ~V~~a~~~ 181 (213)
T 4f02_A 174 FVGRFKSR 181 (213)
T ss_dssp EEEECCCH
T ss_pred EEEEcCCC
Confidence 99998764
No 2
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.96 E-value=8.2e-29 Score=251.17 Aligned_cols=167 Identities=28% Similarity=0.462 Sum_probs=152.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEee
Q 043164 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEY 364 (1049)
Q Consensus 285 ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~ 364 (1049)
++++|||+|||..+|+++|+++|+.||+|..|.|+.++.+|.++|||||+|.+.++|..||+.| ++..|.|+.|.|.+
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l--~~~~~~g~~l~v~~ 79 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVL--NGITVRNKRLKVSY 79 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHH--TTCEETTEECEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhc--CCCEeCCcEEEEEe
Confidence 5689999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cCCCCCCCCCCCCccccccccccCCCCCCCCccccccccccccccccccccccCCCCCCCCcccCCCCCCCCCCCCCCCC
Q 043164 365 SSKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKGSDT 444 (1049)
Q Consensus 365 A~~p~~~~~~~~~~~~~~~~~~~~~r~~~p~dw~~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 444 (1049)
+..... .
T Consensus 80 ~~~~~~-------------------------------------------------------------------------~ 86 (168)
T 1b7f_A 80 ARPGGE-------------------------------------------------------------------------S 86 (168)
T ss_dssp CCCCSS-------------------------------------------------------------------------T
T ss_pred cCCCcc-------------------------------------------------------------------------c
Confidence 621100 0
Q ss_pred CCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEE
Q 043164 445 GPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVA 524 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~ 524 (1049)
.+..+|||+|||..+++++|+++|++||.|..|.|+++..++.++|||||+|.+.++|.+|+..|||..|..+++.|+|.
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 13468999999999999999999999999999999999989999999999999999999999999999984333999999
Q ss_pred Ee
Q 043164 525 YA 526 (1049)
Q Consensus 525 ~A 526 (1049)
||
T Consensus 167 ~A 168 (168)
T 1b7f_A 167 LA 168 (168)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 3
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.3e-28 Score=246.88 Aligned_cols=166 Identities=24% Similarity=0.434 Sum_probs=150.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEeecC
Q 043164 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYSS 366 (1049)
Q Consensus 287 ~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~A~ 366 (1049)
++|||+|||..+|+++|+++|+.||+|.+|.|+.++ ++.++|||||+|.+.++|..||+.| +|..|.|+.|.|.++.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l--~~~~~~g~~i~v~~~~ 77 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTL--NGKQIENNIVKINWAF 77 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHH--TTCEETTEECEEEECC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHc--CCCccCCCeeEEEEcC
Confidence 489999999999999999999999999999999996 5789999999999999999999999 9999999999999962
Q ss_pred CCCCCCCCCCCccccccccccCCCCCCCCccccccccccccccccccccccCCCCCCCCcccCCCCCCCCCCCCCCCCCC
Q 043164 367 KPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKGSDTGP 446 (1049)
Q Consensus 367 ~p~~~~~~~~~~~~~~~~~~~~~r~~~p~dw~~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~p 446 (1049)
.... ....+
T Consensus 78 ~~~~-----------------------------------------------------------------------~~~~~ 86 (166)
T 3md3_A 78 QSQQ-----------------------------------------------------------------------SSSDD 86 (166)
T ss_dssp CCCC-----------------------------------------------------------------------CCCTT
T ss_pred CCCC-----------------------------------------------------------------------CCCCC
Confidence 2100 00114
Q ss_pred cceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEEe
Q 043164 447 THVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYA 526 (1049)
Q Consensus 447 s~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~A 526 (1049)
+.+|||+|||..+++++|+++|++||.|..+.|+.+..++.++|||||+|.+.++|.+|+..|||..| +|+.|+|.||
T Consensus 87 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~i~v~~a 164 (166)
T 3md3_A 87 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL--NGRPLRINWA 164 (166)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEE--TTEECEEEES
T ss_pred CceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcc--CCcEEEEEec
Confidence 57999999999999999999999999999999999998999999999999999999999999999999 7999999998
Q ss_pred ec
Q 043164 527 KS 528 (1049)
Q Consensus 527 k~ 528 (1049)
+.
T Consensus 165 ~~ 166 (166)
T 3md3_A 165 AK 166 (166)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 4
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.96 E-value=1.7e-28 Score=248.10 Aligned_cols=165 Identities=23% Similarity=0.436 Sum_probs=150.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEee
Q 043164 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEY 364 (1049)
Q Consensus 285 ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~ 364 (1049)
++++|||+|||..+|+++|+++|+.||+|..|.|+.++.+|.++|||||+|.+.++|..||+.| ++..|.|+.|.|.+
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l--~~~~~~g~~l~v~~ 78 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL--NGLRLQTKTIKVSY 78 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH--TTCEETTEECEEEE
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHc--CCCccCCceEEEEe
Confidence 3579999999999999999999999999999999999889999999999999999999999999 99999999999999
Q ss_pred cCCCCCCCCCCCCccccccccccCCCCCCCCccccccccccccccccccccccCCCCCCCCcccCCCCCCCCCCCCCCCC
Q 043164 365 SSKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKGSDT 444 (1049)
Q Consensus 365 A~~p~~~~~~~~~~~~~~~~~~~~~r~~~p~dw~~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 444 (1049)
+..... .
T Consensus 79 ~~~~~~-------------------------------------------------------------------------~ 85 (167)
T 1fxl_A 79 ARPSSA-------------------------------------------------------------------------S 85 (167)
T ss_dssp CCCCCG-------------------------------------------------------------------------G
T ss_pred cCCCcc-------------------------------------------------------------------------c
Confidence 621100 0
Q ss_pred CCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCe--EEE
Q 043164 445 GPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQ--ILR 522 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr--~L~ 522 (1049)
.+..+|||+|||..+++++|+++|++||.|..+.|+.+..++.++|||||+|.+.++|.+|+..|||..| +|+ .|.
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~~~i~ 163 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKP--SGATEPIT 163 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCC--TTCSSCCE
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCcc--CCCccceE
Confidence 0246899999999999999999999999999999999988999999999999999999999999999998 565 599
Q ss_pred EEEe
Q 043164 523 VAYA 526 (1049)
Q Consensus 523 V~~A 526 (1049)
|.||
T Consensus 164 v~~A 167 (167)
T 1fxl_A 164 VKFA 167 (167)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9886
No 5
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.96 E-value=3e-28 Score=253.56 Aligned_cols=177 Identities=27% Similarity=0.383 Sum_probs=151.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEE
Q 043164 282 AVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLF 361 (1049)
Q Consensus 282 ~~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~ 361 (1049)
...+.++|||+|||..+|+++|+++|+.||.|.+|.|+.++.+|.++|||||+|.+.++|.+||+. ++..|.|+.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~---~~~~~~g~~l~ 85 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA---RPHKVDGRVVE 85 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT---CSCEETTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc---CCCEECCEEee
Confidence 345678999999999999999999999999999999999999999999999999999999999965 88999999999
Q ss_pred EeecCCCCCCCCCCCCccccccccccCCCCCCCCccccccccccccccccccccccCCCCCCCCcccCCCCCCCCCCCCC
Q 043164 362 FEYSSKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKG 441 (1049)
Q Consensus 362 V~~A~~p~~~~~~~~~~~~~~~~~~~~~r~~~p~dw~~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 441 (1049)
|.++...... .. .
T Consensus 86 v~~~~~~~~~-----------------------------------------------~~--------------------~ 98 (196)
T 1l3k_A 86 PKRAVSREDS-----------------------------------------------QR--------------------P 98 (196)
T ss_dssp EEECCC--------------------------------------------------------------------------
T ss_pred eecccCcccc-----------------------------------------------cc--------------------c
Confidence 9996321000 00 0
Q ss_pred CCCCCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEE
Q 043164 442 SDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQIL 521 (1049)
Q Consensus 442 ~~~~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L 521 (1049)
....+..+|||+|||..+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+||.. +|..| +|+.|
T Consensus 99 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~--~G~~i 175 (196)
T 1l3k_A 99 GAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTV--NGHNC 175 (196)
T ss_dssp ----CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEE--TTEEC
T ss_pred ccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEE--CCEEE
Confidence 0011357999999999999999999999999999999999998999999999999999999999986 78888 79999
Q ss_pred EEEEeecCCC
Q 043164 522 RVAYAKSILG 531 (1049)
Q Consensus 522 ~V~~Ak~k~~ 531 (1049)
.|.||.++..
T Consensus 176 ~v~~a~~k~~ 185 (196)
T 1l3k_A 176 EVRKALSKQE 185 (196)
T ss_dssp EEEECC----
T ss_pred EEEecCChhH
Confidence 9999988744
No 6
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.96 E-value=3.2e-28 Score=257.35 Aligned_cols=184 Identities=20% Similarity=0.326 Sum_probs=155.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEe
Q 043164 284 APSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFE 363 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~ 363 (1049)
.++++|||+|||..+|+++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||+.| ++..|.|+.|.|.
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l--~~~~~~g~~l~v~ 103 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM--NSVMLGGRNIKVG 103 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHH--SSCCCC-CCCEEE
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHc--cCCeeCCeeEEEe
Confidence 34579999999999999999999999999999999999889999999999999999999999999 9999999999998
Q ss_pred ecCCCCCCCCCCCCccccccccccCCCCCCCCccccccccccccccccccccccCCCCCCCCcccCCCCCCCCCCCCCCC
Q 043164 364 YSSKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKGSD 443 (1049)
Q Consensus 364 ~A~~p~~~~~~~~~~~~~~~~~~~~~r~~~p~dw~~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 443 (1049)
++..... ... ..... . ..
T Consensus 104 ~~~~~~~---------------------------~~~------------~~~~~-~----------------------~~ 121 (216)
T 2qfj_A 104 RPSNIGQ---------------------------AQP------------IIDQL-A----------------------EE 121 (216)
T ss_dssp CCSCCGG---------------------------GHH------------HHHHH-H----------------------HH
T ss_pred cCCCccc---------------------------cch------------hhhhh-h----------------------cc
Confidence 8522100 000 00000 0 00
Q ss_pred CCCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEE
Q 043164 444 TGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRV 523 (1049)
Q Consensus 444 ~~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V 523 (1049)
..+.++|||+|||..+++++|+++|++||.|..|.|++++.++.++|||||+|.+.++|.+|+..|||..| +|+.|.|
T Consensus 122 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~--~g~~i~V 199 (216)
T 2qfj_A 122 ARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDL--GGQYLRV 199 (216)
T ss_dssp HTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBC--SSSBCEE
T ss_pred cCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEe--CCcEEEE
Confidence 01357999999999999999999999999999999999998999999999999999999999999999988 7999999
Q ss_pred EEeecCCCCC
Q 043164 524 AYAKSILGPG 533 (1049)
Q Consensus 524 ~~Ak~k~~~~ 533 (1049)
.||+++..+.
T Consensus 200 ~~a~~~~~~~ 209 (216)
T 2qfj_A 200 GKAVTPPMPL 209 (216)
T ss_dssp EECSSCSSTT
T ss_pred EEecCCCCCC
Confidence 9998875443
No 7
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.95 E-value=1.3e-28 Score=249.72 Aligned_cols=165 Identities=22% Similarity=0.390 Sum_probs=149.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEee
Q 043164 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEY 364 (1049)
Q Consensus 285 ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~ 364 (1049)
++++|||+|||..+|+++|+++|+.||+|.+|.|+.++.+|.++|||||+|.+.++|..||+. +..|+|+.|.|.+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~----~~~~~g~~i~v~~ 77 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT----QHILDGKVIDPKR 77 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS----CCEETTEECCCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc----ccccCCeEccccc
Confidence 568999999999999999999999999999999999999999999999999999999999974 4689999999988
Q ss_pred cCCCCCCCCCCCCccccccccccCCCCCCCCccccccccccccccccccccccCCCCCCCCcccCCCCCCCCCCCCCCCC
Q 043164 365 SSKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKGSDT 444 (1049)
Q Consensus 365 A~~p~~~~~~~~~~~~~~~~~~~~~r~~~p~dw~~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 444 (1049)
+.... ..
T Consensus 78 ~~~~~-------------------------------------------------------------------------~~ 84 (167)
T 2cjk_A 78 AIPRD-------------------------------------------------------------------------EQ 84 (167)
T ss_dssp CCCHH-------------------------------------------------------------------------HH
T ss_pred ccchh-------------------------------------------------------------------------hc
Confidence 52100 00
Q ss_pred CCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEE
Q 043164 445 GPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVA 524 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~ 524 (1049)
.++.+|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|++ |+|..| +|+.|.|.
T Consensus 85 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~--~g~~i~V~ 161 (167)
T 2cjk_A 85 DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDF--KDRKIEIK 161 (167)
T ss_dssp HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECS--SSSCEEEE
T ss_pred cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEe--CCeEEEEe
Confidence 024689999999999999999999999999999999998899999999999999999999998 888877 79999999
Q ss_pred EeecC
Q 043164 525 YAKSI 529 (1049)
Q Consensus 525 ~Ak~k 529 (1049)
||+++
T Consensus 162 ~a~pk 166 (167)
T 2cjk_A 162 RAEPR 166 (167)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 99875
No 8
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.95 E-value=3.4e-27 Score=240.64 Aligned_cols=168 Identities=20% Similarity=0.337 Sum_probs=145.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCC--CccceEEEEcCCHHHHHHHHHHhcCCCeeeC---Cee
Q 043164 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSG--VSRGFAFIDFPSVGAARAMMDRIGDDGLVVD---GRK 359 (1049)
Q Consensus 285 ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg--~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~---Gr~ 359 (1049)
++++|||+|||+.+|+++|+++|+.||+|.+|.|+.++.+| .++|||||+|.+.++|..||+.| ++..+. ++.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l--~~~~~~~~~~~~ 79 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNAL--HNMKVLPGMHHP 79 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHH--TTTCCCTTCSSC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHh--cCcEEccCCccc
Confidence 46899999999999999999999999999999999998887 89999999999999999999999 887765 566
Q ss_pred EEEeecCCCCCCCCCCCCccccccccccCCCCCCCCccccccccccccccccccccccCCCCCCCCcccCCCCCCCCCCC
Q 043164 360 LFFEYSSKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGK 439 (1049)
Q Consensus 360 i~V~~A~~p~~~~~~~~~~~~~~~~~~~~~r~~~p~dw~~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 439 (1049)
|.|.++.....
T Consensus 80 ~~~~~~~~~~~--------------------------------------------------------------------- 90 (175)
T 3nmr_A 80 IQMKPADSEKN--------------------------------------------------------------------- 90 (175)
T ss_dssp CEEEECGGGCC---------------------------------------------------------------------
T ss_pred eEEcccccccc---------------------------------------------------------------------
Confidence 66666311000
Q ss_pred CCCCCCCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccC-C
Q 043164 440 KGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKN-G 518 (1049)
Q Consensus 440 ~~~~~~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~-G 518 (1049)
...+..+|||+|||..+++++|+++|++||.|..|.|+++. +|.++|||||+|.+.++|.+|+..|||..+..+ +
T Consensus 91 ---~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~ 166 (175)
T 3nmr_A 91 ---NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCS 166 (175)
T ss_dssp ---SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCS
T ss_pred ---ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCC
Confidence 00135689999999999999999999999999999999986 689999999999999999999999999877422 5
Q ss_pred eEEEEEEee
Q 043164 519 QILRVAYAK 527 (1049)
Q Consensus 519 r~L~V~~Ak 527 (1049)
+.|+|.||.
T Consensus 167 ~~l~V~~ad 175 (175)
T 3nmr_A 167 SPMVVKFAD 175 (175)
T ss_dssp SCCEEEECC
T ss_pred CCeEEEecC
Confidence 999999973
No 9
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.95 E-value=2.7e-27 Score=246.78 Aligned_cols=183 Identities=23% Similarity=0.384 Sum_probs=146.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhc----C-------CeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCC
Q 043164 284 APSGTIVVKGLSQKTTEEDLYQILAEW----G-------PLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDG 352 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~~~F~~~----G-------~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng 352 (1049)
..+++|||+|||..+|+++|+++|+.| | .|.++.+ +.++|||||+|.+.++|.+|| .| +|
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l--~g 72 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AF--DG 72 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GG--TT
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-Hh--cC
Confidence 356899999999999999999999999 4 5555554 456899999999999999999 88 99
Q ss_pred eeeCCeeEEEeecCCCCCCCCCCCCccccccccccCCCCCCCCccccccccccccccccccccccCCCCCCCCcccCCCC
Q 043164 353 LVVDGRKLFFEYSSKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSS 432 (1049)
Q Consensus 353 ~~i~Gr~i~V~~A~~p~~~~~~~~~~~~~~~~~~~~~r~~~p~dw~~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~s 432 (1049)
..|.|+.|.|.++......... . . .+. ...+.
T Consensus 73 ~~~~g~~i~v~~~~~~~~~~~~---~----------~---~~~--------------------~~~~~------------ 104 (198)
T 2yh0_A 73 IIFQGQSLKIRRPHDYQPLPGM---S----------E---NPS--------------------VYVPG------------ 104 (198)
T ss_dssp EEETTEEEEEECCCCCCCCCCS---S----------S---CSS--------------------CCCTT------------
T ss_pred CEEcCceEEEeCCCCCCCCCCC---c----------C---CCc--------------------CCCCC------------
Confidence 9999999999996432110000 0 0 000 00000
Q ss_pred CCCCCCCCCCCCCCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCC
Q 043164 433 NPIPLGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGT 512 (1049)
Q Consensus 433 ~~~~~~~~~~~~~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~ 512 (1049)
........+..+|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|||.
T Consensus 105 -----~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 179 (198)
T 2yh0_A 105 -----VVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGM 179 (198)
T ss_dssp -----SSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTC
T ss_pred -----CccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCC
Confidence 000111235689999999999999999999999999999999999889999999999999999999999999999
Q ss_pred eeccCCeEEEEEEeecCC
Q 043164 513 TLEKNGQILRVAYAKSIL 530 (1049)
Q Consensus 513 ~~~i~Gr~L~V~~Ak~k~ 530 (1049)
.| +|+.|.|.||+++.
T Consensus 180 ~~--~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 180 QL--GDKKLLVQRASVGA 195 (198)
T ss_dssp EE--TTEECEEEESCCCC
T ss_pred EE--CCEEEEEEECCCCC
Confidence 99 79999999998864
No 10
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.95 E-value=2.9e-26 Score=253.51 Aligned_cols=171 Identities=19% Similarity=0.298 Sum_probs=154.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEe
Q 043164 284 APSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFE 363 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~ 363 (1049)
.+..+|||+|||..+|+++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..| +|..|+|+.|.|.
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l--~~~~~~g~~i~v~ 170 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDL--LGKPLGPRTLYVH 170 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH--TTCEETTEECEEE
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHh--CCCEeCCcEEEEE
Confidence 45689999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred ecCCCCCCCCCCCCccccccccccCCCCCCCCccccccccccccccccccccccCCCCCCCCcccCCCCCCCCCCCCCCC
Q 043164 364 YSSKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKGSD 443 (1049)
Q Consensus 364 ~A~~p~~~~~~~~~~~~~~~~~~~~~r~~~p~dw~~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 443 (1049)
++..... . ..
T Consensus 171 ~a~~~~~-------------------------------------------------~---------------------~~ 180 (284)
T 3smz_A 171 WTDAGQL-------------------------------------------------T---------------------PA 180 (284)
T ss_dssp ECCGGGC-------------------------------------------------C---------------------TT
T ss_pred ECCCCCC-------------------------------------------------C---------------------cc
Confidence 9621100 0 00
Q ss_pred CCCcceEEEeCCCccC-cHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEE
Q 043164 444 TGPTHVLVVRGLDEYA-DEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILR 522 (1049)
Q Consensus 444 ~~ps~~LfV~NLp~~~-teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~ 522 (1049)
..+..+|||+|||..+ ++++|+++|+.||.|..|.|+.+. +|.++|||||+|.+.++|.+|+..|||..| +|+.|.
T Consensus 181 ~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~ 257 (284)
T 3smz_A 181 LLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSL--GGSHLR 257 (284)
T ss_dssp TTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEE--TTEECE
T ss_pred cCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCcc--CCeEEE
Confidence 0135789999999995 999999999999999999999987 789999999999999999999999999999 799999
Q ss_pred EEEeecC
Q 043164 523 VAYAKSI 529 (1049)
Q Consensus 523 V~~Ak~k 529 (1049)
|.|++++
T Consensus 258 v~~a~~~ 264 (284)
T 3smz_A 258 VSFCAPG 264 (284)
T ss_dssp EEECCSS
T ss_pred EEEecCC
Confidence 9999886
No 11
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.94 E-value=2.7e-26 Score=233.70 Aligned_cols=159 Identities=25% Similarity=0.464 Sum_probs=141.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhc----C-------CeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCe
Q 043164 285 PSGTIVVKGLSQKTTEEDLYQILAEW----G-------PLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGL 353 (1049)
Q Consensus 285 ps~~L~V~nLp~~~tee~L~~~F~~~----G-------~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~ 353 (1049)
++++|||+|||..+|+++|+++|+.| | .|.++.+.. ++|||||+|.+.++|.+|| .| ++.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~--~~~ 73 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AF--DGI 73 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GG--TTC
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-Hh--CCc
Confidence 56899999999999999999999999 6 677777654 4789999999999999999 88 999
Q ss_pred eeCCeeEEEeecCCCCCCCCCCCCccccccccccCCCCCCCCccccccccccccccccccccccCCCCCCCCcccCCCCC
Q 043164 354 VVDGRKLFFEYSSKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSN 433 (1049)
Q Consensus 354 ~i~Gr~i~V~~A~~p~~~~~~~~~~~~~~~~~~~~~r~~~p~dw~~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~s~ 433 (1049)
.|.|+.|.|.++.....
T Consensus 74 ~~~g~~i~v~~~~~~~~--------------------------------------------------------------- 90 (172)
T 2g4b_A 74 IFQGQSLKIRRPHDYQP--------------------------------------------------------------- 90 (172)
T ss_dssp EETTEECEEECCSSCCC---------------------------------------------------------------
T ss_pred EecCceeeecCCcccCC---------------------------------------------------------------
Confidence 99999999988521000
Q ss_pred CCCCCCCCCCCCCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCe
Q 043164 434 PIPLGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTT 513 (1049)
Q Consensus 434 ~~~~~~~~~~~~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~ 513 (1049)
.....+|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|||..
T Consensus 91 ----------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 160 (172)
T 2g4b_A 91 ----------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQ 160 (172)
T ss_dssp ----------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCE
T ss_pred ----------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCE
Confidence 0024689999999999999999999999999999999998899999999999999999999999999999
Q ss_pred eccCCeEEEEEEee
Q 043164 514 LEKNGQILRVAYAK 527 (1049)
Q Consensus 514 ~~i~Gr~L~V~~Ak 527 (1049)
| +|+.|.|.||.
T Consensus 161 ~--~g~~l~V~~As 172 (172)
T 2g4b_A 161 L--GDKKLLVQRAS 172 (172)
T ss_dssp E--TTEECEEEECC
T ss_pred E--CCeEEEEEeCC
Confidence 9 79999999973
No 12
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.94 E-value=1.2e-26 Score=237.33 Aligned_cols=166 Identities=20% Similarity=0.333 Sum_probs=143.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEE
Q 043164 282 AVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLF 361 (1049)
Q Consensus 282 ~~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~ 361 (1049)
...+.++|||+|||..+|+++|+++|..||.|.. .++.+..+|.++|||||+|.+.++|.+|| .| ++..|.|+.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l--~g~~~~g~~l~ 84 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-EL--TGLKVFGNEIK 84 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HG--GGEEETTEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hc--CCCEeCCeEEE
Confidence 4466789999999999999999999999998766 44555678999999999999999999999 58 99999999999
Q ss_pred EeecCCCCCCCCCCCCccccccccccCCCCCCCCccccccccccccccccccccccCCCCCCCCcccCCCCCCCCCCCCC
Q 043164 362 FEYSSKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKG 441 (1049)
Q Consensus 362 V~~A~~p~~~~~~~~~~~~~~~~~~~~~r~~~p~dw~~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 441 (1049)
|.++.....
T Consensus 85 v~~~~~~~~----------------------------------------------------------------------- 93 (175)
T 1fje_B 85 LEKPKGRDS----------------------------------------------------------------------- 93 (175)
T ss_dssp EECCCCSSC-----------------------------------------------------------------------
T ss_pred EecCCCccc-----------------------------------------------------------------------
Confidence 999632100
Q ss_pred CCCCCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEE
Q 043164 442 SDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQIL 521 (1049)
Q Consensus 442 ~~~~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L 521 (1049)
....+..+|||+|||..+++++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|+..|||..| +|+.|
T Consensus 94 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~i 166 (175)
T 1fje_B 94 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEI--DGRSV 166 (175)
T ss_dssp STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEE--TTEEE
T ss_pred cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEE--CCeEE
Confidence 000135799999999999999999999999988665 45788999999999999999999999999988 79999
Q ss_pred EEEEeecC
Q 043164 522 RVAYAKSI 529 (1049)
Q Consensus 522 ~V~~Ak~k 529 (1049)
.|.||+++
T Consensus 167 ~v~~a~~k 174 (175)
T 1fje_B 167 SLYYTGEK 174 (175)
T ss_dssp EEEECSSC
T ss_pred EEEecCCC
Confidence 99999875
No 13
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.94 E-value=2.5e-25 Score=245.71 Aligned_cols=236 Identities=20% Similarity=0.352 Sum_probs=150.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCC
Q 043164 282 AVAPSGTIVVKGLSQKTTEEDLY----QILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDG 357 (1049)
Q Consensus 282 ~~~ps~~L~V~nLp~~~tee~L~----~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~G 357 (1049)
...++++|||+|||..+|+++|+ ++|+.||.|..|.|++ +|.++|||||+|.+.++|.+||+.| ||..|.|
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g 79 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSM--QGFPFYD 79 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHh--cCCeeCC
Confidence 34678999999999999999976 8999999999999886 7889999999999999999999999 9999999
Q ss_pred eeEEEeecCCCCCCCCCCCCccccccccccCCC----------CCCCCcccccc-ccccc-------cccccc---cccc
Q 043164 358 RKLFFEYSSKPTGGSGGHYGQESAMGARHSNHK----------STIPCDWMCTI-CGCVN-------FARRTS---CFQC 416 (1049)
Q Consensus 358 r~i~V~~A~~p~~~~~~~~~~~~~~~~~~~~~r----------~~~p~dw~~~~-~~~~n-------~~~r~~---~~~~ 416 (1049)
+.|.|.|+...........+............+ ...+....... ..... ...... ....
T Consensus 80 ~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 159 (282)
T 3pgw_A 80 KPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPG 159 (282)
T ss_pred cEEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCC
Confidence 999999984322110000000000000000000 00000000000 00000 000000 0000
Q ss_pred cCCCC--CC-CCcccCCCC---------CC-----CCCCCCCCCCCCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEE
Q 043164 417 NEART--DD-APPAEMNSS---------NP-----IPLGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRL 479 (1049)
Q Consensus 417 ~~~~~--~~-~~~~~~~~s---------~~-----~~~~~~~~~~~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I 479 (1049)
..+.. .. .+....... .. ...........++++|||+|||..+++++|+++|++||.|..|.|
T Consensus 160 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~ 239 (282)
T 3pgw_A 160 QPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRL 239 (282)
T ss_pred CCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEE
Confidence 00000 00 000000000 00 000001123346789999999999999999999999999999999
Q ss_pred eecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEEeec
Q 043164 480 VRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYAKS 528 (1049)
Q Consensus 480 ~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~Ak~ 528 (1049)
+.++ +|||||+|.+.++|.+|+..|||..|. +|+.|+|.||+.
T Consensus 240 ~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~-~g~~l~v~~akk 282 (282)
T 3pgw_A 240 VPGR-----HDIAFVEFDNEVQAGAARDALQGFKIT-QNNAMKISFAKK 282 (282)
T ss_pred ecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeC-CCCEEEEEEecC
Confidence 9764 589999999999999999999999993 399999999863
No 14
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.93 E-value=2.6e-25 Score=235.01 Aligned_cols=195 Identities=17% Similarity=0.200 Sum_probs=142.7
Q ss_pred CCCceEEEcCCC-CCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEE
Q 043164 284 APSGTIVVKGLS-QKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFF 362 (1049)
Q Consensus 284 ~ps~~L~V~nLp-~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V 362 (1049)
.++++|||+||| ..+|+++|+++|+.||.|.+|+|+++ .+|||||+|.+.++|..||+.| ||..|.|+.|.|
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l--ng~~~~g~~l~v 74 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHL--NNNFMFGQKMNV 74 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHH--TTCEETTEECEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHh--CCCEECCceEEE
Confidence 467899999999 79999999999999999999999876 3799999999999999999999 999999999999
Q ss_pred eecCCCCCCCCCCCCccccccccccCCCCCCCCccccccccccccccc-cccccccCCCCCCCCcccCCCCCCCCCCCCC
Q 043164 363 EYSSKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARR-TSCFQCNEARTDDAPPAEMNSSNPIPLGKKG 441 (1049)
Q Consensus 363 ~~A~~p~~~~~~~~~~~~~~~~~~~~~r~~~p~dw~~~~~~~~n~~~r-~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 441 (1049)
.++...... +.... ...........+... ...+.. + .. ....
T Consensus 75 ~~s~~~~~~---p~~~~----------------~~~~~~~~~~~~~~~~~~r~~~--~--------~~--------~~~~ 117 (205)
T 3tyt_A 75 CVSKQPAIM---PGQSY----------------GLEDGSCSYKDFSESRNNRFST--P--------EQ--------AAKN 117 (205)
T ss_dssp EECSCSCCC---CCSCC----------------BCTTSCBSEEECTTCTTCSCSS--H--------HH--------HTTS
T ss_pred EEccCCccC---CCccc----------------ccccCCccccccCCCccccccC--c--------cc--------cccc
Confidence 997432110 00000 000000000000000 000000 0 00 0000
Q ss_pred CCCCCcceEEEeCCCccCcHHHHHHHhhccCCe--eeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCe
Q 043164 442 SDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPI--KDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQ 519 (1049)
Q Consensus 442 ~~~~ps~~LfV~NLp~~~teedLre~Fs~fG~I--~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr 519 (1049)
....|+++|||+|||+.+++++|+++|++||.| ..|+|+.+. +.++|||||+|.+.++|.+||..|||..| +|.
T Consensus 118 ~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~--~g~ 193 (205)
T 3tyt_A 118 RIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQM--KNP 193 (205)
T ss_dssp CCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEE--CCS
T ss_pred ccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCc--cCC
Confidence 112367899999999999999999999999999 899998875 45679999999999999999999999999 454
Q ss_pred ----EEEEEEe
Q 043164 520 ----ILRVAYA 526 (1049)
Q Consensus 520 ----~L~V~~A 526 (1049)
++.|.||
T Consensus 194 ~~~~p~~vk~~ 204 (205)
T 3tyt_A 194 NGPYPYTLKLC 204 (205)
T ss_dssp SSSSCEECEEE
T ss_pred CCCcceEEEec
Confidence 5666554
No 15
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.93 E-value=3e-25 Score=238.26 Aligned_cols=196 Identities=19% Similarity=0.306 Sum_probs=148.3
Q ss_pred CCCCCceEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeE
Q 043164 282 AVAPSGTIVVKGLSQ-KTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKL 360 (1049)
Q Consensus 282 ~~~ps~~L~V~nLp~-~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i 360 (1049)
...++++|||+|||. .+|+++|+++|+.||.|..|.|+.++ +|||||+|.+.++|.+||+.| ++..|.|+.|
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l--~g~~~~g~~l 102 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHL--NGHKLHGKPI 102 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHH--TTCBCSSSBC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHh--CCCeECCeEE
Confidence 346789999999999 99999999999999999999999875 789999999999999999999 9999999999
Q ss_pred EEeecCCCCCCCCCCCCccccccccccCCCCCCCCccccccccccccccccccccccCCCCCCCCcccCCCCCCCCCCCC
Q 043164 361 FFEYSSKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKK 440 (1049)
Q Consensus 361 ~V~~A~~p~~~~~~~~~~~~~~~~~~~~~r~~~p~dw~~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 440 (1049)
.|.++....... +.... .... ....+... ...+... + . ....
T Consensus 103 ~v~~a~~~~~~~--~~~~~----------------~~~~---~~~~~~~~------~~~~~~~-~-~---------~~~~ 144 (229)
T 2adc_A 103 RITLSKHQNVQL--PREGQ----------------EDQG---LTKDYGNS------PLHRFKK-P-G---------SKNF 144 (229)
T ss_dssp EEECCSCCCCCC--CCSSS----------------STTT---TEEECTTC------SSCCCCS-T-T---------SGGG
T ss_pred EEEEecCccccC--ccccc----------------cccc---cccccccC------cccccCC-c-c---------cccc
Confidence 999974321110 00000 0000 00000000 0000000 0 0 0000
Q ss_pred CCCCCCcceEEEeCCCccCcHHHHHHHhhccC-CeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccC-C
Q 043164 441 GSDTGPTHVLVVRGLDEYADEEMLRYEFSKHA-PIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKN-G 518 (1049)
Q Consensus 441 ~~~~~ps~~LfV~NLp~~~teedLre~Fs~fG-~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~-G 518 (1049)
.....++.+|||+|||..+++++|+++|++|| .|..|.|+.+ ++|||||+|.+.++|.+|+..|||..| + |
T Consensus 145 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~--~~g 217 (229)
T 2adc_A 145 QNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDL--GEN 217 (229)
T ss_dssp TTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBS--SSS
T ss_pred ccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCcc--CCC
Confidence 11123678999999999999999999999999 9999999763 368999999999999999999999998 6 9
Q ss_pred eEEEEEEeecC
Q 043164 519 QILRVAYAKSI 529 (1049)
Q Consensus 519 r~L~V~~Ak~k 529 (1049)
+.|+|.|+++.
T Consensus 218 ~~l~v~~a~~~ 228 (229)
T 2adc_A 218 HHLRVSFSKST 228 (229)
T ss_dssp CBCEEEECSSC
T ss_pred CeEEEEEecCC
Confidence 99999999874
No 16
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.93 E-value=3e-25 Score=246.41 Aligned_cols=174 Identities=24% Similarity=0.345 Sum_probs=145.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEE
Q 043164 284 APSGTIVVKGLSQKTTEEDLYQILAEWG-PLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFF 362 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~~~F~~~G-~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V 362 (1049)
.+.++|||+|||..+|+++|+++|..|| .|..|.|+.++. |.++|||||+|.+.++|..||..| +|..|.|+.|.|
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v 191 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKL--NGLKIEGYTLVT 191 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHH--TTCEETTEECEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHh--CCCEeCCcEEEE
Confidence 3578999999999999999999999999 999999999864 889999999999999999999999 999999999999
Q ss_pred eecCCCCCCCCCCCCccccccccccCCCCCCCCccccccccccccccccccccccCCCCCCCCcccCCCCCCCCCCCCCC
Q 043164 363 EYSSKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKGS 442 (1049)
Q Consensus 363 ~~A~~p~~~~~~~~~~~~~~~~~~~~~r~~~p~dw~~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 442 (1049)
.++....... .. ..
T Consensus 192 ~~a~~~~~~~-----------------------------------------------~~-------------------~~ 205 (292)
T 2ghp_A 192 KVSNPLEKSK-----------------------------------------------RT-------------------DS 205 (292)
T ss_dssp EECCCC--------------------------------------------------------------------------
T ss_pred EECCCCcccc-----------------------------------------------cc-------------------cc
Confidence 9973211000 00 00
Q ss_pred CCCCcceEEEeCCCcc-CcHHHHHHHhhccCCeeeEEEeecCC-CCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeE
Q 043164 443 DTGPTHVLVVRGLDEY-ADEEMLRYEFSKHAPIKDLRLVRDKF-THVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQI 520 (1049)
Q Consensus 443 ~~~ps~~LfV~NLp~~-~teedLre~Fs~fG~I~~v~I~rD~~-tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~ 520 (1049)
...+..+|||+|||.. +++++|+++|++||.|..|.|+++.. |+.++|||||+|.+.++|.+|+ .|||..| +|+.
T Consensus 206 ~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~--~g~~ 282 (292)
T 2ghp_A 206 ATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLL--GNRE 282 (292)
T ss_dssp -CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEE--TTEE
T ss_pred cCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEE--CCcE
Confidence 1124679999999999 99999999999999999999999876 5899999999999999999999 9999998 7999
Q ss_pred EEEEEeecC
Q 043164 521 LRVAYAKSI 529 (1049)
Q Consensus 521 L~V~~Ak~k 529 (1049)
|.|.||+++
T Consensus 283 i~V~~a~~k 291 (292)
T 2ghp_A 283 ISVSLADKK 291 (292)
T ss_dssp EEEEECCCC
T ss_pred EEEEEecCC
Confidence 999999876
No 17
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.93 E-value=4e-25 Score=231.11 Aligned_cols=192 Identities=18% Similarity=0.295 Sum_probs=146.4
Q ss_pred CceEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEee
Q 043164 286 SGTIVVKGLSQ-KTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEY 364 (1049)
Q Consensus 286 s~~L~V~nLp~-~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~ 364 (1049)
+++|||+|||. .+|+++|+++|+.||.|..|.|+.++ +|||||+|.+.++|..||+.| +|..|.|+.|.|.+
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l--~~~~~~g~~l~v~~ 75 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHL--NGHKLHGKPIRITL 75 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHH--TTCCCSSCCCEEEE
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHh--CCCeecCeEEEEEE
Confidence 57999999999 99999999999999999999999875 789999999999999999999 99999999999999
Q ss_pred cCCCCCCCCCCCCccccccccccCCCCCCCCccccccccccccccccccccccCCCCCCCCcccCCCCCCCCCCCCCCCC
Q 043164 365 SSKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKGSDT 444 (1049)
Q Consensus 365 A~~p~~~~~~~~~~~~~~~~~~~~~r~~~p~dw~~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 444 (1049)
+....... +... ...... ...+... ...+.... .........
T Consensus 76 a~~~~~~~--~~~~----------------~~~~~~---~~~~~~~------~~~r~~~~-----------~~~~~~~~~ 117 (198)
T 1qm9_A 76 SKHQNVQL--PREG----------------QEDQGL---TKDYGNS------PLHRFKKP-----------GSKNFQNIF 117 (198)
T ss_dssp CCCCSCCC--SSSS----------------SSSSSC---EEESSCC------CTTSSSSC-----------CCCCCSCCC
T ss_pred ecCCCcCC--CCcC----------------Cccccc---cccccCC------chhhccCc-----------cccccccCC
Confidence 74322110 0000 000000 0000000 00000000 000011123
Q ss_pred CCcceEEEeCCCccCcHHHHHHHhhccC-CeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccC-CeEEE
Q 043164 445 GPTHVLVVRGLDEYADEEMLRYEFSKHA-PIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKN-GQILR 522 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLre~Fs~fG-~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~-Gr~L~ 522 (1049)
.|+++|||+|||..+++++|+++|++|| .|..|.|+.+ .+|||||+|.+.++|.+|+..|||..| + |+.|+
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~--~~g~~l~ 190 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDL--GENHHLR 190 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCC--SSCCSCC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCcc--CCCCeEE
Confidence 4678999999999999999999999999 9999999764 368999999999999999999999998 6 99999
Q ss_pred EEEeecC
Q 043164 523 VAYAKSI 529 (1049)
Q Consensus 523 V~~Ak~k 529 (1049)
|.|++++
T Consensus 191 v~~a~~~ 197 (198)
T 1qm9_A 191 VSFSKST 197 (198)
T ss_dssp EEEECCC
T ss_pred EEeeccc
Confidence 9999874
No 18
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.92 E-value=1.9e-24 Score=238.97 Aligned_cols=156 Identities=19% Similarity=0.283 Sum_probs=145.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEe
Q 043164 284 APSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFE 363 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~ 363 (1049)
.++++|||+|||..+|+++|+++|+.|| |..|.+ +.++|||||+|.+.++|..||+.| +|..|.|+.|.|.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l--~~~~~~g~~i~v~ 90 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAF--HQSRLRERELSVQ 90 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHH--TTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHc--CCCeeCCeEEEEE
Confidence 4678999999999999999999999999 988888 456889999999999999999999 9999999999998
Q ss_pred ecCCCCCCCCCCCCccccccccccCCCCCCCCccccccccccccccccccccccCCCCCCCCcccCCCCCCCCCCCCCCC
Q 043164 364 YSSKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKGSD 443 (1049)
Q Consensus 364 ~A~~p~~~~~~~~~~~~~~~~~~~~~r~~~p~dw~~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 443 (1049)
++.
T Consensus 91 ~~~----------------------------------------------------------------------------- 93 (284)
T 3smz_A 91 LQP----------------------------------------------------------------------------- 93 (284)
T ss_dssp ECC-----------------------------------------------------------------------------
T ss_pred ecC-----------------------------------------------------------------------------
Confidence 841
Q ss_pred CCCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEE
Q 043164 444 TGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRV 523 (1049)
Q Consensus 444 ~~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V 523 (1049)
+..+|||+|||..+++++|+++|++||.|..|.|+.+..+|.++|||||+|.+.++|.+|+..|+|..| +|+.|.|
T Consensus 94 --~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~--~g~~i~v 169 (284)
T 3smz_A 94 --TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPL--GPRTLYV 169 (284)
T ss_dssp --CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEE
T ss_pred --CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEe--CCcEEEE
Confidence 125899999999999999999999999999999999999999999999999999999999999999998 7999999
Q ss_pred EEeecC
Q 043164 524 AYAKSI 529 (1049)
Q Consensus 524 ~~Ak~k 529 (1049)
.|+.+.
T Consensus 170 ~~a~~~ 175 (284)
T 3smz_A 170 HWTDAG 175 (284)
T ss_dssp EECCGG
T ss_pred EECCCC
Confidence 998775
No 19
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.92 E-value=2.5e-24 Score=235.78 Aligned_cols=159 Identities=25% Similarity=0.390 Sum_probs=143.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEE
Q 043164 283 VAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFF 362 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V 362 (1049)
..+.++|||+|||..+|+++|+++|+.||.|..|.|+++ +|||||+|.+.++|..||..| +|..|.|+.|.|
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l--~g~~i~g~~l~v 90 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAEL--DGTILKSRPLRI 90 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHH--TTCEETTEECEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHc--CCcEECCceeEe
Confidence 345679999999999999999999999999999999654 689999999999999999999 999999999999
Q ss_pred eecCCCCCCCCCCCCccccccccccCCCCCCCCccccccccccccccccccccccCCCCCCCCcccCCCCCCCCCCCCCC
Q 043164 363 EYSSKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKGS 442 (1049)
Q Consensus 363 ~~A~~p~~~~~~~~~~~~~~~~~~~~~r~~~p~dw~~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 442 (1049)
.++.
T Consensus 91 ~~a~---------------------------------------------------------------------------- 94 (261)
T 3sde_A 91 RFAT---------------------------------------------------------------------------- 94 (261)
T ss_dssp EECC----------------------------------------------------------------------------
T ss_pred eecc----------------------------------------------------------------------------
Confidence 9851
Q ss_pred CCCCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhC-CCee-ccCCeE
Q 043164 443 DTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATN-GTTL-EKNGQI 520 (1049)
Q Consensus 443 ~~~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~Ln-G~~~-~i~Gr~ 520 (1049)
+..+|||+|||..+++++|+++|+.||.|..|.|+.+ .+|.++|||||+|.+.++|.+|+..|| |..+ ...++.
T Consensus 95 ---~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~ 170 (261)
T 3sde_A 95 ---HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRP 170 (261)
T ss_dssp ---CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCB
T ss_pred ---cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCce
Confidence 1358999999999999999999999999999999999 489999999999999999999999995 4444 134899
Q ss_pred EEEEEeecC
Q 043164 521 LRVAYAKSI 529 (1049)
Q Consensus 521 L~V~~Ak~k 529 (1049)
|.|.++...
T Consensus 171 i~v~~~~~~ 179 (261)
T 3sde_A 171 VIVEPMEQF 179 (261)
T ss_dssp CEEEECCCE
T ss_pred EEEeecccc
Confidence 999998765
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.92 E-value=2.2e-24 Score=239.40 Aligned_cols=160 Identities=23% Similarity=0.306 Sum_probs=139.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEE
Q 043164 282 AVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLF 361 (1049)
Q Consensus 282 ~~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~ 361 (1049)
...+.++|||+|||..+|+++|+++|+.||+|..|.|+.++.+ ++|||||+|.+.++|..||+ | ++..|.|+.|.
T Consensus 37 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~-~--~~~~~~g~~i~ 111 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAIT-K--THKVVGQNEII 111 (292)
T ss_dssp -----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHT-T--TTCEETTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHH-h--CCcEeCCcEEE
Confidence 3456789999999999999999999999999999999998643 58999999999999999994 7 99999999999
Q ss_pred EeecCCCCCCCCCCCCccccccccccCCCCCCCCccccccccccccccccccccccCCCCCCCCcccCCCCCCCCCCCCC
Q 043164 362 FEYSSKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKG 441 (1049)
Q Consensus 362 V~~A~~p~~~~~~~~~~~~~~~~~~~~~r~~~p~dw~~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 441 (1049)
|.++
T Consensus 112 v~~~---------------------------------------------------------------------------- 115 (292)
T 2ghp_A 112 VSHL---------------------------------------------------------------------------- 115 (292)
T ss_dssp EEEC----------------------------------------------------------------------------
T ss_pred EEEC----------------------------------------------------------------------------
Confidence 9873
Q ss_pred CCCCCcceEEEeCCCccCcHHHHHHHhhccC-CeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeE
Q 043164 442 SDTGPTHVLVVRGLDEYADEEMLRYEFSKHA-PIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQI 520 (1049)
Q Consensus 442 ~~~~ps~~LfV~NLp~~~teedLre~Fs~fG-~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~ 520 (1049)
...+|||+|||..+++++|+++|+.|| .|..|.|+.+.. +.++|||||+|.+.++|.+|+..|||..| +|+.
T Consensus 116 ----~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~ 188 (292)
T 2ghp_A 116 ----TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKI--EGYT 188 (292)
T ss_dssp ----CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEE--TTEE
T ss_pred ----CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEe--CCcE
Confidence 135899999999999999999999999 999999999875 78999999999999999999999999999 7999
Q ss_pred EEEEEeecC
Q 043164 521 LRVAYAKSI 529 (1049)
Q Consensus 521 L~V~~Ak~k 529 (1049)
|.|.|+.+.
T Consensus 189 l~v~~a~~~ 197 (292)
T 2ghp_A 189 LVTKVSNPL 197 (292)
T ss_dssp CEEEECCCC
T ss_pred EEEEECCCC
Confidence 999998865
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.79 E-value=8.2e-19 Score=176.97 Aligned_cols=85 Identities=36% Similarity=0.552 Sum_probs=80.0
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~ 525 (1049)
+..+|||+|||..+++++|+++|++||.|..|.|+.|+.++.++|||||+|.+.++|.+||..|||..| +|+.|.|.|
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~~ 146 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVL--DGRELRVQM 146 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEES--SSSEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE--CCeEEEEEE
Confidence 467999999999999999999999999999999999998999999999999999999999999999988 799999999
Q ss_pred eecCCCC
Q 043164 526 AKSILGP 532 (1049)
Q Consensus 526 Ak~k~~~ 532 (1049)
|++...+
T Consensus 147 a~~~~~~ 153 (158)
T 2kn4_A 147 ARYGRPP 153 (158)
T ss_dssp ECCSSCC
T ss_pred CCCCCCC
Confidence 9886443
No 22
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.71 E-value=2.2e-17 Score=157.92 Aligned_cols=77 Identities=25% Similarity=0.587 Sum_probs=72.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEeec
Q 043164 286 SGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYS 365 (1049)
Q Consensus 286 s~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~A 365 (1049)
+.+|||+|||+.+|+++|+++|+.||.|.+|.|+.++ +.++|||||+|.+.++|.+||+.| ++..|+|+.|.|.++
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l--~~~~~~g~~i~V~~a 80 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM--NGMLLNDRKVFVGRF 80 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHH--TTCEETTEECEEEES
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHc--CCCEECCEEEEEEEC
Confidence 5689999999999999999999999999999999985 458999999999999999999999 999999999999997
Q ss_pred C
Q 043164 366 S 366 (1049)
Q Consensus 366 ~ 366 (1049)
.
T Consensus 81 ~ 81 (115)
T 4f25_A 81 K 81 (115)
T ss_dssp S
T ss_pred C
Confidence 3
No 23
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.70 E-value=4.7e-17 Score=151.55 Aligned_cols=80 Identities=19% Similarity=0.490 Sum_probs=77.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEe
Q 043164 284 APSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFE 363 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~ 363 (1049)
-.+++|||+|||..+|+++|+++|+.||+|..|.|++|+.+|.++|||||+|.+.++|.+||+.| ||..|+|+.|.|.
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~l--ng~~~~gr~l~V~ 94 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL--NGLRLQSKTIKVS 94 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHH--TTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHh--CCCEECCEEEEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred ec
Q 043164 364 YS 365 (1049)
Q Consensus 364 ~A 365 (1049)
||
T Consensus 95 ~A 96 (99)
T 4fxv_A 95 YA 96 (99)
T ss_dssp EC
T ss_pred Ee
Confidence 97
No 24
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.70 E-value=3.3e-17 Score=150.11 Aligned_cols=80 Identities=34% Similarity=0.584 Sum_probs=75.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEee
Q 043164 286 SGTIVVKGLSQKTTEEDLYQILAEWG-PLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEY 364 (1049)
Q Consensus 286 s~~L~V~nLp~~~tee~L~~~F~~~G-~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~ 364 (1049)
+++|||+|||+.+||++|+++|+.|| +|.+|+|++|+.||.++|||||+|.+.++|.+||+.| .+++.|+|++|.|.|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~-~~~~~~~gr~i~V~~ 79 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEAN-QHSLNILGQKVSMHY 79 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTT-TTEEEETTEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhc-CCCeEECCEEEEEEE
Confidence 47899999999999999999999999 7999999999999999999999999999999999875 367889999999999
Q ss_pred cC
Q 043164 365 SS 366 (1049)
Q Consensus 365 A~ 366 (1049)
|.
T Consensus 80 a~ 81 (91)
T 2lxi_A 80 SD 81 (91)
T ss_dssp CC
T ss_pred cC
Confidence 84
No 25
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.68 E-value=1.1e-16 Score=148.99 Aligned_cols=80 Identities=29% Similarity=0.520 Sum_probs=77.2
Q ss_pred cceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEEe
Q 043164 447 THVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYA 526 (1049)
Q Consensus 447 s~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~A 526 (1049)
.++|||+|||..+|+++|+++|++||.|..|.|++|+.+|.++|||||+|.+.++|.+|++.|||..| +|+.|+|.||
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~--~gr~l~V~~A 96 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRL--QSKTIKVSYA 96 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEE--CCEEEEEEEe
Confidence 46899999999999999999999999999999999999999999999999999999999999999999 7999999999
Q ss_pred ec
Q 043164 527 KS 528 (1049)
Q Consensus 527 k~ 528 (1049)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 76
No 26
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.68 E-value=1e-16 Score=160.34 Aligned_cols=140 Identities=19% Similarity=0.285 Sum_probs=109.8
Q ss_pred CCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEeecCCCCCCCCCCCCccccccccccCCCCCCCCcccccccc
Q 043164 324 SGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYSSKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICG 403 (1049)
Q Consensus 324 tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~A~~p~~~~~~~~~~~~~~~~~~~~~r~~~p~dw~~~~~~ 403 (1049)
....+|+++|+|.+.++|.+|++.| .||..|+| .|.+.++.......
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~-~ng~~~~G-~~~~~~a~~~~~~~------------------------------- 55 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQY-ANDNGVDG-EWTYDDATKTFTVT------------------------------- 55 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHH-HHHHTCCC-EEEEETTTTEEEEE-------------------------------
T ss_pred cccccccceeeecCHHHHHHHHHHH-hcCCCCCC-ceecccccCccccc-------------------------------
Confidence 3467899999999999999999886 36889999 99998863210000
Q ss_pred ccccccccccccccCCCCCCCCcccCCCCCCCCCCCCCCCCCCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecC
Q 043164 404 CVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDK 483 (1049)
Q Consensus 404 ~~n~~~r~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~ 483 (1049)
........ ........+.++|||+|||+.+++++|+++|++||.|..|.|+++
T Consensus 56 -----------~~~~~~~~---------------~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~- 108 (150)
T 2i2y_A 56 -----------EGSHHHHH---------------HMHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN- 108 (150)
T ss_dssp -----------CSSSSCCC---------------CSCSSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-
T ss_pred -----------cccccccc---------------cccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-
Confidence 00000000 000111224679999999999999999999999999999999986
Q ss_pred CCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEEeecC
Q 043164 484 FTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYAKSI 529 (1049)
Q Consensus 484 ~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~Ak~k 529 (1049)
++|||||+|.+.++|.+|+..|||..| +|+.|+|.|++++
T Consensus 109 ----~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 109 ----PPGFAFVEFEDPRDAADAVRELDGRTL--CGCRVRVELSNGE 148 (150)
T ss_dssp ----SCSEEEEEESSHHHHHHHHHHHSSSCS--SSSCCEEEECCCC
T ss_pred ----CCcEEEEEECCHHHHHHHHHHcCCCEE--CCeEEEEEEcCCC
Confidence 589999999999999999999999988 7999999999875
No 27
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.65 E-value=1.4e-16 Score=147.21 Aligned_cols=82 Identities=29% Similarity=0.492 Sum_probs=75.9
Q ss_pred cceEEEeCCCccCcHHHHHHHhhccCC--eeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCe--eccCCeEEE
Q 043164 447 THVLVVRGLDEYADEEMLRYEFSKHAP--IKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTT--LEKNGQILR 522 (1049)
Q Consensus 447 s~~LfV~NLp~~~teedLre~Fs~fG~--I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~--~~i~Gr~L~ 522 (1049)
-++|||+|||+.+|+++|+++|++||. |..|+|++|+.|+.++|||||+|.+.++|.+||+.|||.. +.|+|+.|.
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~ 88 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIG 88 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEE
Confidence 468999999999999999999999995 6799999999999999999999999999999999999963 445899999
Q ss_pred EEEeec
Q 043164 523 VAYAKS 528 (1049)
Q Consensus 523 V~~Ak~ 528 (1049)
|.||++
T Consensus 89 V~~Aks 94 (95)
T 2lkz_A 89 VDFAKS 94 (95)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 999975
No 28
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.65 E-value=1.4e-16 Score=145.98 Aligned_cols=83 Identities=29% Similarity=0.524 Sum_probs=76.6
Q ss_pred cceEEEeCCCccCcHHHHHHHhhccC-CeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhC-CCeeccCCeEEEEE
Q 043164 447 THVLVVRGLDEYADEEMLRYEFSKHA-PIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATN-GTTLEKNGQILRVA 524 (1049)
Q Consensus 447 s~~LfV~NLp~~~teedLre~Fs~fG-~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~Ln-G~~~~i~Gr~L~V~ 524 (1049)
+++|||+|||..+|+++|+++|++|| .|..|+|++|+.++.++|||||+|.+.++|.+||+.|+ +..| +|+.|+|.
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~--~gr~i~V~ 78 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNI--LGQKVSMH 78 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEE--TTEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEE--CCEEEEEE
Confidence 46999999999999999999999999 79999999999999999999999999999999999885 4456 89999999
Q ss_pred EeecCCC
Q 043164 525 YAKSILG 531 (1049)
Q Consensus 525 ~Ak~k~~ 531 (1049)
||+++..
T Consensus 79 ~a~~~~~ 85 (91)
T 2lxi_A 79 YSDPKPK 85 (91)
T ss_dssp CCCSCCC
T ss_pred EcCCCCC
Confidence 9988744
No 29
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.65 E-value=4.1e-16 Score=148.02 Aligned_cols=81 Identities=16% Similarity=0.235 Sum_probs=78.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEe
Q 043164 284 APSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFE 363 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~ 363 (1049)
.|.++|||+|||+.+|+++|+++|++||.|.+|.|+.|+.||.++|||||+|.+.++|.+||+.| ||..|+|+.|.|.
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~l--ng~~~~gr~i~V~ 81 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNL--HLTSVMGNIIHAQ 81 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH--TTCEETTEECEEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHh--CCCEECCeEEEEE
Confidence 56789999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred ecC
Q 043164 364 YSS 366 (1049)
Q Consensus 364 ~A~ 366 (1049)
++.
T Consensus 82 ~a~ 84 (110)
T 3s8s_A 82 LDI 84 (110)
T ss_dssp ECS
T ss_pred ECC
Confidence 973
No 30
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1e-15 Score=140.55 Aligned_cols=85 Identities=24% Similarity=0.466 Sum_probs=80.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEE
Q 043164 283 VAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFF 362 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V 362 (1049)
+.++++|||+|||..+|+++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||+.| |+..|+|+.|.|
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~V 79 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL--NGFELAGRPMRV 79 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHH--TTCCSSSSCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHh--CCCeeCCcEEEE
Confidence 357789999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred eecCCCC
Q 043164 363 EYSSKPT 369 (1049)
Q Consensus 363 ~~A~~p~ 369 (1049)
.++..+.
T Consensus 80 ~~a~~~~ 86 (95)
T 2dnz_A 80 GHVTERL 86 (95)
T ss_dssp EESSCCC
T ss_pred EEccccc
Confidence 9985443
No 31
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.63 E-value=1.3e-15 Score=144.69 Aligned_cols=82 Identities=17% Similarity=0.237 Sum_probs=78.4
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~ 525 (1049)
|.++|||+||+..+++++|+++|++||.|..|.|+.|+.|+.++|||||+|.+.++|.+||+.|||..| +|+.|+|.+
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~--~gr~i~V~~ 82 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSV--MGNIIHAQL 82 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEE--CCeEEEEEE
Confidence 568999999999999999999999999999999999999999999999999999999999999999999 799999999
Q ss_pred eecC
Q 043164 526 AKSI 529 (1049)
Q Consensus 526 Ak~k 529 (1049)
|...
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 8653
No 32
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.63 E-value=3.1e-16 Score=144.92 Aligned_cols=80 Identities=21% Similarity=0.525 Sum_probs=74.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCC--eeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCe----eeCC
Q 043164 284 APSGTIVVKGLSQKTTEEDLYQILAEWGP--LRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGL----VVDG 357 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~~~F~~~G~--i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~----~i~G 357 (1049)
..-.+|||+|||+.+|+++|+++|++||. |.+|+|++|+.||.++|||||+|.+.++|.+||+.| |+. .|+|
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~l--ng~~~~~~i~G 84 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQIL--QSLHPPLKIDG 84 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHH--HSSSSCEEETT
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHh--cCCCCCceECC
Confidence 34579999999999999999999999995 679999999999999999999999999999999999 664 6999
Q ss_pred eeEEEeec
Q 043164 358 RKLFFEYS 365 (1049)
Q Consensus 358 r~i~V~~A 365 (1049)
++|.|.||
T Consensus 85 r~i~V~~A 92 (95)
T 2lkz_A 85 KTIGVDFA 92 (95)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEEc
Confidence 99999997
No 33
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.62 E-value=1.3e-15 Score=137.42 Aligned_cols=82 Identities=22% Similarity=0.432 Sum_probs=76.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEE
Q 043164 283 VAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFF 362 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V 362 (1049)
..+.++|||+|||..+|+++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||+.| |+..|+|+.|.|
T Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~v 80 (87)
T 3bs9_A 3 LGSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM--GGQWLGGRQIRT 80 (87)
T ss_dssp ---CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH--TTCEETTEECEE
T ss_pred CCCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHc--CCCEECCeEEEE
Confidence 356789999999999999999999999999999999999889999999999999999999999999 999999999999
Q ss_pred eecC
Q 043164 363 EYSS 366 (1049)
Q Consensus 363 ~~A~ 366 (1049)
.++.
T Consensus 81 ~~a~ 84 (87)
T 3bs9_A 81 NWAT 84 (87)
T ss_dssp EEEC
T ss_pred EecC
Confidence 9974
No 34
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.61 E-value=1.8e-15 Score=139.50 Aligned_cols=81 Identities=25% Similarity=0.525 Sum_probs=77.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEee
Q 043164 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEY 364 (1049)
Q Consensus 285 ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~ 364 (1049)
|+++|||+|||..+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||+.| +|..|+|+.|.|.+
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l~V~~ 78 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNL--NGYQLGSRFLKCGY 78 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHH--TTCEETTEECEEEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHh--CCCeECCeEEEEEE
Confidence 5789999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cCC
Q 043164 365 SSK 367 (1049)
Q Consensus 365 A~~ 367 (1049)
+..
T Consensus 79 a~~ 81 (96)
T 2x1f_A 79 SSN 81 (96)
T ss_dssp CSC
T ss_pred cCC
Confidence 843
No 35
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.9e-15 Score=138.77 Aligned_cols=87 Identities=34% Similarity=0.450 Sum_probs=81.7
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~ 525 (1049)
++++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|||..| +|+.|+|.|
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V~~ 81 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFEL--AGRPMRVGH 81 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCS--SSSCCEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCee--CCcEEEEEE
Confidence 568999999999999999999999999999999999998999999999999999999999999999988 799999999
Q ss_pred eecCCCCCC
Q 043164 526 AKSILGPGS 534 (1049)
Q Consensus 526 Ak~k~~~~~ 534 (1049)
++++.....
T Consensus 82 a~~~~~~~~ 90 (95)
T 2dnz_A 82 VTERLDGGS 90 (95)
T ss_dssp SSCCCCCCC
T ss_pred cccccCCCC
Confidence 998865543
No 36
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.61 E-value=1.8e-15 Score=135.90 Aligned_cols=81 Identities=20% Similarity=0.393 Sum_probs=78.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEE
Q 043164 283 VAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFF 362 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V 362 (1049)
..+.++|||+|||..+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|..||+.| ||..|+|+.|.|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v 81 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM--NESELFGRTIRV 81 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHH--TTCEETTEECEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHh--CCCEECCcEEEE
Confidence 457799999999999999999999999999999999999899999999999999999999999999 999999999999
Q ss_pred eec
Q 043164 363 EYS 365 (1049)
Q Consensus 363 ~~A 365 (1049)
.+|
T Consensus 82 ~~a 84 (85)
T 3mdf_A 82 NLA 84 (85)
T ss_dssp EEC
T ss_pred EEc
Confidence 986
No 37
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.61 E-value=2.4e-15 Score=154.96 Aligned_cols=82 Identities=27% Similarity=0.432 Sum_probs=78.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEE
Q 043164 282 AVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLF 361 (1049)
Q Consensus 282 ~~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~ 361 (1049)
...++++|||+|||..+|+++|+++|+.||+|..|.|+.++ +|.++|||||+|.+.++|.+||+.| |+..|+|+.|.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~l--ng~~l~Gr~l~ 160 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQY--KGVPLDGRPMD 160 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHS--TTCBCSSSBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHh--CCCEECCEEEE
Confidence 44677899999999999999999999999999999999998 9999999999999999999999999 99999999999
Q ss_pred EeecC
Q 043164 362 FEYSS 366 (1049)
Q Consensus 362 V~~A~ 366 (1049)
|.+|.
T Consensus 161 V~~a~ 165 (177)
T 2f3j_A 161 IQLVA 165 (177)
T ss_dssp EEEES
T ss_pred EEEec
Confidence 99974
No 38
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.61 E-value=2.6e-15 Score=135.40 Aligned_cols=82 Identities=26% Similarity=0.396 Sum_probs=76.8
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~ 525 (1049)
+..+|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|||..| +|+.|+|.|
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v~~ 82 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL--GGRQIRTNW 82 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE--CCeEEEEEe
Confidence 467999999999999999999999999999999999988999999999999999999999999999998 799999999
Q ss_pred eecC
Q 043164 526 AKSI 529 (1049)
Q Consensus 526 Ak~k 529 (1049)
|+++
T Consensus 83 a~~k 86 (87)
T 3bs9_A 83 ATRK 86 (87)
T ss_dssp EC--
T ss_pred cCCC
Confidence 9875
No 39
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.61 E-value=3.7e-16 Score=182.95 Aligned_cols=82 Identities=26% Similarity=0.424 Sum_probs=78.8
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~ 525 (1049)
++++|||+||+..+|+++|.++|++||.|+.|.|+.++.++.++|||||+|.+.++|.+||..|||..| +|+.|.|.|
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i--~gr~i~V~~ 178 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKI--DGRRVLVDV 178 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEE--CCEEEEEEE
Confidence 567999999999999999999999999999999999999999999999999999999999999999999 799999999
Q ss_pred eecC
Q 043164 526 AKSI 529 (1049)
Q Consensus 526 Ak~k 529 (1049)
|++.
T Consensus 179 a~~~ 182 (437)
T 3pgw_S 179 ERGR 182 (437)
T ss_pred eCCC
Confidence 9875
No 40
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=3e-15 Score=138.76 Aligned_cols=84 Identities=20% Similarity=0.343 Sum_probs=78.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEE
Q 043164 282 AVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLF 361 (1049)
Q Consensus 282 ~~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~ 361 (1049)
...+.++|||+|||..+|+++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||+ | ++..|+|+.|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~--~~~~~~g~~l~ 82 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-M--HFHDIMGKKVE 82 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-H--CCCBSSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-h--CCCEECCeEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999998 8 99999999999
Q ss_pred EeecCCC
Q 043164 362 FEYSSKP 368 (1049)
Q Consensus 362 V~~A~~p 368 (1049)
|.++..+
T Consensus 83 V~~a~~~ 89 (99)
T 2dgs_A 83 VKRAEPR 89 (99)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9998543
No 41
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.9e-15 Score=141.08 Aligned_cols=84 Identities=26% Similarity=0.440 Sum_probs=79.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEE
Q 043164 282 AVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLF 361 (1049)
Q Consensus 282 ~~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~ 361 (1049)
...+.++|||+|||..+|+++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||+.| |+..|+|+.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~ 86 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAM--DGAELDGRELR 86 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHH--SSCCBTTBCCE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHc--CCCEECCcEEE
Confidence 3456789999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred EeecCC
Q 043164 362 FEYSSK 367 (1049)
Q Consensus 362 V~~A~~ 367 (1049)
|.++..
T Consensus 87 V~~a~~ 92 (103)
T 2dnm_A 87 VQVARY 92 (103)
T ss_dssp EEECSS
T ss_pred EEECCc
Confidence 999854
No 42
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.5e-15 Score=139.95 Aligned_cols=84 Identities=19% Similarity=0.368 Sum_probs=79.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEE
Q 043164 283 VAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFF 362 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V 362 (1049)
..+.++|||+|||..+|+++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||+.| |+..|+|+.|.|
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~V 86 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM--NESELFGRTIRV 86 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHH--TTEEETTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHh--CCCEECCcEEEE
Confidence 356789999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred eecCCC
Q 043164 363 EYSSKP 368 (1049)
Q Consensus 363 ~~A~~p 368 (1049)
.++..+
T Consensus 87 ~~a~~~ 92 (102)
T 2cqb_A 87 NLAKPM 92 (102)
T ss_dssp EECCCC
T ss_pred EeCCCC
Confidence 998543
No 43
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=4e-15 Score=137.81 Aligned_cols=83 Identities=30% Similarity=0.465 Sum_probs=79.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEE
Q 043164 283 VAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFF 362 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V 362 (1049)
..++++|||+|||..+|+++|+++|+.||+|..|.|+.++.++.++|||||+|.+.++|.+||+.| |+..|.|+.|.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~V 82 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEV--DGQVFQGRMLHV 82 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHT--TTEESSSCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHh--CCCEECCcEEEE
Confidence 456789999999999999999999999999999999999889999999999999999999999999 999999999999
Q ss_pred eecCC
Q 043164 363 EYSSK 367 (1049)
Q Consensus 363 ~~A~~ 367 (1049)
.++..
T Consensus 83 ~~a~~ 87 (99)
T 1whw_A 83 LPSTI 87 (99)
T ss_dssp EECCC
T ss_pred EEcCC
Confidence 99854
No 44
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.5e-15 Score=137.87 Aligned_cols=82 Identities=34% Similarity=0.596 Sum_probs=78.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEE
Q 043164 282 AVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLF 361 (1049)
Q Consensus 282 ~~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~ 361 (1049)
...++++|||+|||..+|+++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||+.| |+..|+|+.|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~ 88 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA--NGMELDGRRIR 88 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHH--TTEEETTEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHh--CCCEECCEEEE
Confidence 3456789999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred Eeec
Q 043164 362 FEYS 365 (1049)
Q Consensus 362 V~~A 365 (1049)
|.++
T Consensus 89 v~~a 92 (95)
T 2cqc_A 89 VSGP 92 (95)
T ss_dssp EECC
T ss_pred EEec
Confidence 9997
No 45
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.4e-15 Score=140.48 Aligned_cols=82 Identities=29% Similarity=0.489 Sum_probs=78.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEe
Q 043164 284 APSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFE 363 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~ 363 (1049)
.++++|||+|||..+|+++|+++|+.||+|..|.|+.++.++.++|||||+|.+.++|.+||+.| |+..|+|+.|.|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGV--SGFGYDHLILNVE 90 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHT--TTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHc--CCCeeCCcEEEEE
Confidence 46789999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred ecCC
Q 043164 364 YSSK 367 (1049)
Q Consensus 364 ~A~~ 367 (1049)
++..
T Consensus 91 ~a~~ 94 (103)
T 2cq0_A 91 WAKP 94 (103)
T ss_dssp ESSC
T ss_pred ECCC
Confidence 9854
No 46
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.61 E-value=2.7e-15 Score=134.77 Aligned_cols=81 Identities=37% Similarity=0.539 Sum_probs=77.5
Q ss_pred CCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEE
Q 043164 445 GPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVA 524 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~ 524 (1049)
.+.++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|++.|||..| +|+.|+|.
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~ 82 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL--FGRTIRVN 82 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEE--CCcEEEEE
Confidence 3578999999999999999999999999999999999988999999999999999999999999999999 79999999
Q ss_pred Eee
Q 043164 525 YAK 527 (1049)
Q Consensus 525 ~Ak 527 (1049)
||+
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 985
No 47
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.61 E-value=3.1e-15 Score=133.71 Aligned_cols=79 Identities=24% Similarity=0.447 Sum_probs=76.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEeec
Q 043164 286 SGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYS 365 (1049)
Q Consensus 286 s~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~A 365 (1049)
+.+|||+|||..+|+++|+++|+.||+|..|.|+.++.+|.++|||||+|.+.++|..||+.| ||..|+|+.|.|.++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l--~g~~~~g~~l~v~~a 78 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSM--QGQDLNGRPLRINWA 78 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHH--TTCEETTEECEEEEC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHh--cCCeeCCcEEEEEec
Confidence 368999999999999999999999999999999999999999999999999999999999999 999999999999997
Q ss_pred C
Q 043164 366 S 366 (1049)
Q Consensus 366 ~ 366 (1049)
.
T Consensus 79 ~ 79 (83)
T 3md1_A 79 A 79 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 48
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.61 E-value=3.2e-15 Score=142.52 Aligned_cols=83 Identities=17% Similarity=0.398 Sum_probs=78.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEE
Q 043164 283 VAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFF 362 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V 362 (1049)
..+.++|||+|||..+|+++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||+.| |+..|+|+.|.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~V 99 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM--NGFQIGMKRLKV 99 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHH--TTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHc--CCCEECCEEEEE
Confidence 356689999999999999999999999999999999999989999999999999999999999999 999999999999
Q ss_pred eecCC
Q 043164 363 EYSSK 367 (1049)
Q Consensus 363 ~~A~~ 367 (1049)
.++..
T Consensus 100 ~~a~~ 104 (115)
T 2cpz_A 100 QLKRS 104 (115)
T ss_dssp ECCCC
T ss_pred EEcCC
Confidence 99853
No 49
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.2e-15 Score=138.65 Aligned_cols=82 Identities=26% Similarity=0.541 Sum_probs=78.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEE-EEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEE
Q 043164 284 APSGTIVVKGLSQKTTEEDLYQILAEWGPLRHV-RVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFF 362 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v-~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V 362 (1049)
.++++|||+|||..+|+++|+++|+.||.|..| .|+.++.+|.++|||||+|.+.++|.+||+.| |+..|.|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~v 80 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAM--NGQYLCNRPITV 80 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTT--TTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHc--CCCEECCEEEEE
Confidence 567899999999999999999999999999999 99999899999999999999999999999999 999999999999
Q ss_pred eecCC
Q 043164 363 EYSSK 367 (1049)
Q Consensus 363 ~~A~~ 367 (1049)
.++..
T Consensus 81 ~~a~~ 85 (96)
T 1x5t_A 81 SYAFK 85 (96)
T ss_dssp EESCC
T ss_pred EEecc
Confidence 99854
No 50
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.60 E-value=4e-15 Score=132.97 Aligned_cols=81 Identities=33% Similarity=0.526 Sum_probs=77.7
Q ss_pred cceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEEe
Q 043164 447 THVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYA 526 (1049)
Q Consensus 447 s~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~A 526 (1049)
+.+|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|||..| +|+.|+|.||
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~--~g~~l~v~~a 78 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL--NGRPLRINWA 78 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEE--TTEECEEEEC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCee--CCcEEEEEec
Confidence 35899999999999999999999999999999999998999999999999999999999999999999 7999999999
Q ss_pred ecC
Q 043164 527 KSI 529 (1049)
Q Consensus 527 k~k 529 (1049)
+++
T Consensus 79 ~~~ 81 (83)
T 3md1_A 79 AKL 81 (83)
T ss_dssp CCC
T ss_pred CcC
Confidence 875
No 51
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.6e-15 Score=139.90 Aligned_cols=85 Identities=33% Similarity=0.610 Sum_probs=79.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEE
Q 043164 282 AVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLF 361 (1049)
Q Consensus 282 ~~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~ 361 (1049)
...+.++|||+|||..+|+++|+++|+.||+|..|.|+.++.++.++|||||+|.+.++|..||+.| |+..|+|+.|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~ 85 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM--NGKSVDGRQIR 85 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHH--TTCCTTSCCCE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHh--CCCEECCeEEE
Confidence 3456789999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred EeecCCC
Q 043164 362 FEYSSKP 368 (1049)
Q Consensus 362 V~~A~~p 368 (1049)
|.++..+
T Consensus 86 v~~a~~~ 92 (102)
T 1x5s_A 86 VDQAGKS 92 (102)
T ss_dssp EEEEECC
T ss_pred EEECCCC
Confidence 9998543
No 52
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=3.2e-15 Score=136.96 Aligned_cols=81 Identities=26% Similarity=0.431 Sum_probs=77.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEE
Q 043164 283 VAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFF 362 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V 362 (1049)
..+.++|||+|||..+|+++|+++|+.||+|..|.|+.++.++.++|||||+|.+.++|.+||+.| |+..|.|+.|.|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~v 90 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAI--NNKQLFGRVIKA 90 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHT--TTEEETTEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHc--CCCeeCCcEEEE
Confidence 356789999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred eec
Q 043164 363 EYS 365 (1049)
Q Consensus 363 ~~A 365 (1049)
.||
T Consensus 91 ~~a 93 (94)
T 2e5h_A 91 SIA 93 (94)
T ss_dssp EEC
T ss_pred Eec
Confidence 996
No 53
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=3.1e-15 Score=138.26 Aligned_cols=82 Identities=28% Similarity=0.490 Sum_probs=77.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCC---CCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeE
Q 043164 284 APSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERN---SGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKL 360 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~---tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i 360 (1049)
.++++|||+|||..+|+++|+++|+.||+|..|.|+.++. |+.++|||||+|.+.++|.+||+.| |+..|+|+.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l 80 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQL--QGHTVDGHKL 80 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHS--TTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHh--CCCeeCCeEE
Confidence 5678999999999999999999999999999999999877 6799999999999999999999999 9999999999
Q ss_pred EEeecCC
Q 043164 361 FFEYSSK 367 (1049)
Q Consensus 361 ~V~~A~~ 367 (1049)
.|.++..
T Consensus 81 ~V~~a~~ 87 (98)
T 2cpf_A 81 EVRISER 87 (98)
T ss_dssp EEECSSC
T ss_pred EEEEccC
Confidence 9999854
No 54
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=5.8e-15 Score=137.83 Aligned_cols=86 Identities=33% Similarity=0.458 Sum_probs=81.0
Q ss_pred CCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEE
Q 043164 445 GPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVA 524 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~ 524 (1049)
.++++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..|||..| +|+.|+|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v~ 90 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGY--DHLILNVE 90 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEE--TTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCee--CCcEEEEE
Confidence 4578999999999999999999999999999999999998999999999999999999999999999998 79999999
Q ss_pred EeecCCCC
Q 043164 525 YAKSILGP 532 (1049)
Q Consensus 525 ~Ak~k~~~ 532 (1049)
|++++...
T Consensus 91 ~a~~~~~~ 98 (103)
T 2cq0_A 91 WAKPSTNS 98 (103)
T ss_dssp ESSCCCCS
T ss_pred ECCCCCCC
Confidence 99887543
No 55
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=4.3e-15 Score=137.69 Aligned_cols=85 Identities=20% Similarity=0.332 Sum_probs=79.6
Q ss_pred CCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEE
Q 043164 445 GPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVA 524 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~ 524 (1049)
.+.++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||+ |||..| +|+.|+|.
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~--~g~~l~V~ 84 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDI--MGKKVEVK 84 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBS--SSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEE--CCeEEEEE
Confidence 457899999999999999999999999999999999999999999999999999999999998 999988 79999999
Q ss_pred EeecCCCC
Q 043164 525 YAKSILGP 532 (1049)
Q Consensus 525 ~Ak~k~~~ 532 (1049)
|++++...
T Consensus 85 ~a~~~~~~ 92 (99)
T 2dgs_A 85 RAEPRDSK 92 (99)
T ss_dssp ECCCCCCC
T ss_pred ECCCCccc
Confidence 99887543
No 56
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2.7e-15 Score=138.95 Aligned_cols=83 Identities=19% Similarity=0.436 Sum_probs=78.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCee-EEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCee--
Q 043164 283 VAPSGTIVVKGLSQKTTEEDLYQILAEWGPLR-HVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRK-- 359 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~-~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~-- 359 (1049)
..++++|||+|||..+|+++|+++|+.||+|. .|.|+.++.+|.++|||||+|.+.++|.+||+.| |+..|.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~~~ 83 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKI--NGKPLPGATPA 83 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTT--TTSEESSCSSC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHH--cCCccCCCCcc
Confidence 45679999999999999999999999999999 9999999999999999999999999999999999 999999999
Q ss_pred --EEEeecCC
Q 043164 360 --LFFEYSSK 367 (1049)
Q Consensus 360 --i~V~~A~~ 367 (1049)
|+|.|+..
T Consensus 84 ~~l~v~~a~~ 93 (99)
T 2div_A 84 KRFKLNYATY 93 (99)
T ss_dssp EECCEEETTC
T ss_pred eeEEEeecCC
Confidence 99999843
No 57
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=5e-15 Score=140.00 Aligned_cols=84 Identities=31% Similarity=0.503 Sum_probs=79.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCC------Ceee
Q 043164 282 AVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDD------GLVV 355 (1049)
Q Consensus 282 ~~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~n------g~~i 355 (1049)
...+.++|||+|||..+|+++|+++|+.||+|..|.|+.++.+|.++|||||+|.+.++|.+||+.| + +..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~--~~~~~~~~~~~ 88 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAA--SLEAEGGGLKL 88 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHH--CTTTTTCCEES
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHh--ccccccCCcEE
Confidence 3456789999999999999999999999999999999999999999999999999999999999999 8 9999
Q ss_pred CCeeEEEeecCC
Q 043164 356 DGRKLFFEYSSK 367 (1049)
Q Consensus 356 ~Gr~i~V~~A~~ 367 (1049)
+|+.|.|.++..
T Consensus 89 ~g~~l~v~~a~~ 100 (111)
T 1x4h_A 89 DGRQLKVDLAVT 100 (111)
T ss_dssp SSCEEEEECCCC
T ss_pred cCEEEEEEECCC
Confidence 999999999843
No 58
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3.5e-15 Score=137.30 Aligned_cols=86 Identities=31% Similarity=0.444 Sum_probs=80.8
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeE-EEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDL-RLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVA 524 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v-~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~ 524 (1049)
++++|||+|||..+++++|+++|++||.|..| .|+.++.++.++|||||+|.+.++|.+|+..|||..| +|+.|+|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v~ 81 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL--CNRPITVS 81 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEE--TTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEE--CCEEEEEE
Confidence 56899999999999999999999999999999 9999988999999999999999999999999999999 79999999
Q ss_pred EeecCCCCC
Q 043164 525 YAKSILGPG 533 (1049)
Q Consensus 525 ~Ak~k~~~~ 533 (1049)
||+++....
T Consensus 82 ~a~~~~~~~ 90 (96)
T 1x5t_A 82 YAFKKDSKG 90 (96)
T ss_dssp ESCCCCCCC
T ss_pred EecccCCCC
Confidence 998875443
No 59
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.60 E-value=3.1e-15 Score=138.74 Aligned_cols=84 Identities=24% Similarity=0.432 Sum_probs=79.6
Q ss_pred ccCCCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeE--------EEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCC
Q 043164 280 HYAVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRH--------VRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDD 351 (1049)
Q Consensus 280 ~~~~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~--------v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~n 351 (1049)
..+..+.++|||+|||..+|+++|+++|+.||.|.. |.|+.++.+|.++|||||+|.+.++|..||+.| |
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l--~ 84 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWF--D 84 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHH--T
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHh--C
Confidence 345567899999999999999999999999999999 999999999999999999999999999999999 9
Q ss_pred CeeeCCeeEEEeec
Q 043164 352 GLVVDGRKLFFEYS 365 (1049)
Q Consensus 352 g~~i~Gr~i~V~~A 365 (1049)
|..|.|+.|.|.+|
T Consensus 85 g~~~~g~~l~V~~A 98 (99)
T 2la6_A 85 GKEFSGNPIKVSFA 98 (99)
T ss_dssp TCBSSSSBCEEEEC
T ss_pred CCEeCCcEEEEEec
Confidence 99999999999986
No 60
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=4.8e-15 Score=138.78 Aligned_cols=83 Identities=24% Similarity=0.431 Sum_probs=79.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEE
Q 043164 283 VAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFF 362 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V 362 (1049)
..+.++|||+|||..+|+++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||+.| ++..|+|+.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v 89 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM--DMIKLYGKPIRV 89 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHS--SSCBCSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHh--CCCeECCeEEEE
Confidence 456789999999999999999999999999999999999989999999999999999999999999 999999999999
Q ss_pred eecCC
Q 043164 363 EYSSK 367 (1049)
Q Consensus 363 ~~A~~ 367 (1049)
.++..
T Consensus 90 ~~a~~ 94 (105)
T 1x5u_A 90 NKASA 94 (105)
T ss_dssp EETTT
T ss_pred EECCC
Confidence 99854
No 61
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=4.8e-15 Score=137.61 Aligned_cols=83 Identities=19% Similarity=0.446 Sum_probs=78.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEE
Q 043164 282 AVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLF 361 (1049)
Q Consensus 282 ~~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~ 361 (1049)
...+.++|||+|||..+|+++|+++|+.||.|..|.|+.++ +|.++|||||+|.+.++|.+||+.| ++..|+|+.|.
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~ 89 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKM--DGMTIKENIIK 89 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHH--TTEESSSCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHh--CCCEECCEEEE
Confidence 34567899999999999999999999999999999999997 9999999999999999999999999 99999999999
Q ss_pred EeecCC
Q 043164 362 FEYSSK 367 (1049)
Q Consensus 362 V~~A~~ 367 (1049)
|.++..
T Consensus 90 v~~a~~ 95 (100)
T 2do4_A 90 VAISNS 95 (100)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 999843
No 62
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.59 E-value=3.5e-15 Score=137.56 Aligned_cols=82 Identities=26% Similarity=0.457 Sum_probs=78.7
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~ 525 (1049)
|+++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|++.|||..| +|+.|+|.|
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V~~ 78 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQL--GSRFLKCGY 78 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeE--CCeEEEEEE
Confidence 467999999999999999999999999999999999998999999999999999999999999999999 799999999
Q ss_pred eecC
Q 043164 526 AKSI 529 (1049)
Q Consensus 526 Ak~k 529 (1049)
|+++
T Consensus 79 a~~~ 82 (96)
T 2x1f_A 79 SSNS 82 (96)
T ss_dssp CSCS
T ss_pred cCCC
Confidence 9886
No 63
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=8.1e-15 Score=136.06 Aligned_cols=83 Identities=29% Similarity=0.435 Sum_probs=78.4
Q ss_pred CCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEE
Q 043164 445 GPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVA 524 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~ 524 (1049)
.+.++|||+|||..+++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|.+|+..|||..| +|+.|+|.
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~ 91 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTI--KENIIKVA 91 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEES--SSCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEE--CCEEEEEE
Confidence 356899999999999999999999999999999999998 899999999999999999999999999888 79999999
Q ss_pred EeecCC
Q 043164 525 YAKSIL 530 (1049)
Q Consensus 525 ~Ak~k~ 530 (1049)
|++++.
T Consensus 92 ~a~~~~ 97 (100)
T 2do4_A 92 ISNSGP 97 (100)
T ss_dssp ECCCCS
T ss_pred ECCCCC
Confidence 998864
No 64
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.59 E-value=8.3e-15 Score=139.67 Aligned_cols=85 Identities=20% Similarity=0.252 Sum_probs=80.4
Q ss_pred CCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEE
Q 043164 445 GPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVA 524 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~ 524 (1049)
.+.++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..|||..| +|+.|+|.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V~ 100 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQI--GMKRLKVQ 100 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEE--CCEEEEEE
Confidence 3567999999999999999999999999999999999998999999999999999999999999999999 79999999
Q ss_pred EeecCCC
Q 043164 525 YAKSILG 531 (1049)
Q Consensus 525 ~Ak~k~~ 531 (1049)
|++++..
T Consensus 101 ~a~~~~~ 107 (115)
T 2cpz_A 101 LKRSKND 107 (115)
T ss_dssp CCCCSCC
T ss_pred EcCCCCc
Confidence 9988754
No 65
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=6e-15 Score=136.59 Aligned_cols=86 Identities=30% Similarity=0.403 Sum_probs=80.8
Q ss_pred CCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEE
Q 043164 445 GPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVA 524 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~ 524 (1049)
.++++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..|||..| +|+.|+|.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V~ 83 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVF--QGRMLHVL 83 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEES--SSCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEE--CCcEEEEE
Confidence 3578999999999999999999999999999999999998999999999999999999999999999988 79999999
Q ss_pred EeecCCCC
Q 043164 525 YAKSILGP 532 (1049)
Q Consensus 525 ~Ak~k~~~ 532 (1049)
|++++...
T Consensus 84 ~a~~~~~~ 91 (99)
T 1whw_A 84 PSTIKKEA 91 (99)
T ss_dssp ECCCCSTT
T ss_pred EcCCCccc
Confidence 99887543
No 66
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.59 E-value=9.3e-16 Score=139.86 Aligned_cols=79 Identities=24% Similarity=0.397 Sum_probs=72.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcC--CeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEee
Q 043164 287 GTIVVKGLSQKTTEEDLYQILAEWG--PLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEY 364 (1049)
Q Consensus 287 ~~L~V~nLp~~~tee~L~~~F~~~G--~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~ 364 (1049)
.+|||+|||..+|+++|+++|+.|| .|.+|.|+.++.+|.++|||||+|.+.++|.+||+.| ||..|+|+.|.|.+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l--~g~~~~gr~i~V~~ 79 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLL--PKRELHGQNPVVTP 79 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHG--GGSCSSSCCCEECC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHc--CCCeeCCEEEEEEE
Confidence 4799999999999999999999999 9999999999999999999999999999999999999 99999999999999
Q ss_pred cCC
Q 043164 365 SSK 367 (1049)
Q Consensus 365 A~~ 367 (1049)
+..
T Consensus 80 ~~~ 82 (90)
T 3p5t_L 80 SNK 82 (90)
T ss_dssp C--
T ss_pred CCC
Confidence 753
No 67
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.9e-15 Score=138.63 Aligned_cols=87 Identities=33% Similarity=0.492 Sum_probs=81.4
Q ss_pred CCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEE
Q 043164 445 GPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVA 524 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~ 524 (1049)
.+..+|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||+.|||..| +|+.|+|.
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v~ 87 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV--DGRQIRVD 87 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCT--TSCCCEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE--CCeEEEEE
Confidence 3568999999999999999999999999999999999998999999999999999999999999999988 79999999
Q ss_pred EeecCCCCC
Q 043164 525 YAKSILGPG 533 (1049)
Q Consensus 525 ~Ak~k~~~~ 533 (1049)
||+++....
T Consensus 88 ~a~~~~~~~ 96 (102)
T 1x5s_A 88 QAGKSSDNR 96 (102)
T ss_dssp EEECCCCCC
T ss_pred ECCCCCCCC
Confidence 998875543
No 68
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=6.9e-15 Score=134.91 Aligned_cols=83 Identities=43% Similarity=0.620 Sum_probs=78.7
Q ss_pred CCCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEE
Q 043164 444 TGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRV 523 (1049)
Q Consensus 444 ~~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V 523 (1049)
..++++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|||..| +|+.|+|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v 89 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL--DGRRIRV 89 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEE--TTEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE--CCEEEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999999998 7999999
Q ss_pred EEeec
Q 043164 524 AYAKS 528 (1049)
Q Consensus 524 ~~Ak~ 528 (1049)
.||++
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 99875
No 69
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=4.8e-15 Score=138.06 Aligned_cols=86 Identities=35% Similarity=0.491 Sum_probs=80.9
Q ss_pred CCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEE
Q 043164 445 GPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVA 524 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~ 524 (1049)
.+.++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||+.|||..| +|+.|+|.
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~V~ 87 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL--FGRTIRVN 87 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEE--TTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCcEEEEE
Confidence 3578999999999999999999999999999999999998999999999999999999999999999998 79999999
Q ss_pred EeecCCCC
Q 043164 525 YAKSILGP 532 (1049)
Q Consensus 525 ~Ak~k~~~ 532 (1049)
|++++...
T Consensus 88 ~a~~~~~~ 95 (102)
T 2cqb_A 88 LAKPMRIK 95 (102)
T ss_dssp ECCCCCCC
T ss_pred eCCCCCCC
Confidence 99887543
No 70
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.59 E-value=3.7e-15 Score=140.03 Aligned_cols=82 Identities=28% Similarity=0.464 Sum_probs=78.1
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeE
Q 043164 281 YAVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKL 360 (1049)
Q Consensus 281 ~~~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i 360 (1049)
....+.++|||+|||..+|+++|+++|+.||.|..|.|+.++ +|.++|||||+|.+.++|.+||+.| ++..|.|+.|
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l 100 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQY--NGVPLDGRPM 100 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHH--TTCEETTEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHh--CCCEeCCcEE
Confidence 345678999999999999999999999999999999999998 9999999999999999999999999 9999999999
Q ss_pred EEeec
Q 043164 361 FFEYS 365 (1049)
Q Consensus 361 ~V~~A 365 (1049)
.|.++
T Consensus 101 ~V~~a 105 (107)
T 3ulh_A 101 NIQLV 105 (107)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99996
No 71
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=5.6e-15 Score=135.35 Aligned_cols=81 Identities=25% Similarity=0.322 Sum_probs=77.4
Q ss_pred CCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEE
Q 043164 445 GPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVA 524 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~ 524 (1049)
.+.++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|++.|||..| +|+.|+|.
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v~ 91 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQL--FGRVIKAS 91 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEE--TTEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCee--CCcEEEEE
Confidence 4578999999999999999999999999999999999998999999999999999999999999999999 79999999
Q ss_pred Eee
Q 043164 525 YAK 527 (1049)
Q Consensus 525 ~Ak 527 (1049)
||+
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 985
No 72
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.59 E-value=3.7e-15 Score=140.90 Aligned_cols=83 Identities=22% Similarity=0.448 Sum_probs=79.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEE
Q 043164 282 AVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLF 361 (1049)
Q Consensus 282 ~~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~ 361 (1049)
...++++|||+|||..+|+++|+++|+.||+|..|.|+.++.+|.++|||||+|.+.++|..||+.| +|..|+|+.|.
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l--~g~~i~g~~l~ 99 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL--NGFELAGRPMK 99 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHH--TTCCSSSSCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHc--CCCEECCEEEE
Confidence 3456789999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred EeecC
Q 043164 362 FEYSS 366 (1049)
Q Consensus 362 V~~A~ 366 (1049)
|.++.
T Consensus 100 V~~a~ 104 (108)
T 2jrs_A 100 VGHVT 104 (108)
T ss_dssp EECSC
T ss_pred EEEcc
Confidence 99974
No 73
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.59 E-value=4.6e-15 Score=139.13 Aligned_cols=85 Identities=16% Similarity=0.295 Sum_probs=79.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeee---CCe
Q 043164 282 AVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVV---DGR 358 (1049)
Q Consensus 282 ~~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i---~Gr 358 (1049)
...+.++|||+|||..+|+++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||+.| |+..+ .|+
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l--~g~~~~~~~g~ 86 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSAL--HEQKTLPGMNR 86 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHH--TTTCCCTTCSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHh--cCCcccCCCCc
Confidence 3456789999999999999999999999999999999999999999999999999999999999999 99887 899
Q ss_pred eEEEeecCCC
Q 043164 359 KLFFEYSSKP 368 (1049)
Q Consensus 359 ~i~V~~A~~p 368 (1049)
.|.|.++...
T Consensus 87 ~l~v~~a~~~ 96 (106)
T 2dgp_A 87 PIQVKPADSE 96 (106)
T ss_dssp CCEEEECCCC
T ss_pred eEEEEECCcc
Confidence 9999998543
No 74
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.58 E-value=6.2e-15 Score=140.45 Aligned_cols=83 Identities=24% Similarity=0.462 Sum_probs=79.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEE
Q 043164 283 VAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFF 362 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V 362 (1049)
..+.++|||+|||..+|+++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||+.| ++..|+|+.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~V 89 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM--GGQWLGGRQIRT 89 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHT--TTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHh--CCCEECCEEEEE
Confidence 356789999999999999999999999999999999999889999999999999999999999999 999999999999
Q ss_pred eecCC
Q 043164 363 EYSSK 367 (1049)
Q Consensus 363 ~~A~~ 367 (1049)
.|+..
T Consensus 90 ~~a~~ 94 (115)
T 2dgo_A 90 NWATR 94 (115)
T ss_dssp EESSC
T ss_pred EEccC
Confidence 99853
No 75
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.58 E-value=1.6e-14 Score=137.54 Aligned_cols=85 Identities=26% Similarity=0.381 Sum_probs=80.5
Q ss_pred CCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEE
Q 043164 445 GPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVA 524 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~ 524 (1049)
.+..+|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..|||..| +|+.|+|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V~ 90 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL--GGRQIRTN 90 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEE--TTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCEEEEEE
Confidence 4578999999999999999999999999999999999988999999999999999999999999999998 79999999
Q ss_pred EeecCCC
Q 043164 525 YAKSILG 531 (1049)
Q Consensus 525 ~Ak~k~~ 531 (1049)
||+++..
T Consensus 91 ~a~~~~~ 97 (115)
T 2dgo_A 91 WATRKPP 97 (115)
T ss_dssp ESSCCCC
T ss_pred EccCCCC
Confidence 9988754
No 76
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.58 E-value=1.6e-15 Score=141.33 Aligned_cols=80 Identities=20% Similarity=0.381 Sum_probs=76.9
Q ss_pred CCCceEEEcCCCC------CCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCC
Q 043164 284 APSGTIVVKGLSQ------KTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDG 357 (1049)
Q Consensus 284 ~ps~~L~V~nLp~------~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~G 357 (1049)
..+++|||+|||. .+++++|+++|++||.|..|.|+.++.||.++|||||+|.+.++|.+||+.| ||..|.|
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~l--ng~~~~g 81 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSF--HGKRLDL 81 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHH--TTCBSSS
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHh--CCcccCC
Confidence 3468999999999 9999999999999999999999999999999999999999999999999999 9999999
Q ss_pred -eeEEEeec
Q 043164 358 -RKLFFEYS 365 (1049)
Q Consensus 358 -r~i~V~~A 365 (1049)
+.|.|.++
T Consensus 82 ~r~l~V~~a 90 (100)
T 3ns6_A 82 KHRLFLYTM 90 (100)
T ss_dssp SCBCEEEES
T ss_pred CeEEEEEEC
Confidence 99999997
No 77
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=6.7e-15 Score=137.73 Aligned_cols=83 Identities=14% Similarity=0.328 Sum_probs=77.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCC-CCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeE
Q 043164 282 AVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNS-GVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKL 360 (1049)
Q Consensus 282 ~~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~t-g~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i 360 (1049)
+..+.++|||+|||..+|+++|+++|+.|| |..|.|+.++.+ |.++|||||+|.+.++|.+|| .| ++..|.|+.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l--~g~~~~g~~l 86 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SL--NEESLGNKRI 86 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GG--GTCEETTEEC
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hc--CCCEeCCcEE
Confidence 345678999999999999999999999999 999999999888 999999999999999999999 89 9999999999
Q ss_pred EEeecCCC
Q 043164 361 FFEYSSKP 368 (1049)
Q Consensus 361 ~V~~A~~p 368 (1049)
.|.++..+
T Consensus 87 ~V~~a~~~ 94 (104)
T 1wi8_A 87 RVDVADQA 94 (104)
T ss_dssp EEEECCCC
T ss_pred EEEEccCC
Confidence 99998543
No 78
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=5.8e-15 Score=138.47 Aligned_cols=83 Identities=28% Similarity=0.423 Sum_probs=79.4
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~ 525 (1049)
++++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|||..| +|+.|+|.|
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V~~ 99 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL--MGQPISVDW 99 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBS--SSSBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEE--CCcEEEEEe
Confidence 568999999999999999999999999999999999999999999999999999999999999999988 799999999
Q ss_pred eecCC
Q 043164 526 AKSIL 530 (1049)
Q Consensus 526 Ak~k~ 530 (1049)
|+++.
T Consensus 100 a~~~~ 104 (106)
T 1p27_B 100 CFVRG 104 (106)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 98864
No 79
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=6.3e-15 Score=136.20 Aligned_cols=86 Identities=30% Similarity=0.444 Sum_probs=79.7
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCC---CCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKF---THVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILR 522 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~---tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~ 522 (1049)
++++|||+|||..+++++|+++|++||.|..|.|+.++. ++.++|||||+|.+.++|.+||..|||..| +|+.|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 81 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTV--DGHKLE 81 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEE--TTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCee--CCeEEE
Confidence 567999999999999999999999999999999999876 668999999999999999999999999998 799999
Q ss_pred EEEeecCCCCC
Q 043164 523 VAYAKSILGPG 533 (1049)
Q Consensus 523 V~~Ak~k~~~~ 533 (1049)
|.|++++..+.
T Consensus 82 V~~a~~~~~~~ 92 (98)
T 2cpf_A 82 VRISERATKPA 92 (98)
T ss_dssp EECSSCSSCCC
T ss_pred EEEccCCCCCC
Confidence 99998875543
No 80
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.58 E-value=1.3e-15 Score=149.85 Aligned_cols=86 Identities=36% Similarity=0.546 Sum_probs=80.4
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~ 525 (1049)
++.+|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..|||..| +|+.|+|.|
T Consensus 46 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i--~g~~l~V~~ 123 (135)
T 2lea_A 46 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVL--DGRELRVQM 123 (135)
T ss_dssp GCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCS--SSSCCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE--CCEEEEEEE
Confidence 357899999999999999999999999999999999998999999999999999999999999999998 799999999
Q ss_pred eecCCCCC
Q 043164 526 AKSILGPG 533 (1049)
Q Consensus 526 Ak~k~~~~ 533 (1049)
+++...+.
T Consensus 124 a~~~~~~~ 131 (135)
T 2lea_A 124 ARYGRPPD 131 (135)
T ss_dssp CCCCCCCT
T ss_pred CCCCCCCc
Confidence 98875543
No 81
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=5.1e-15 Score=138.88 Aligned_cols=82 Identities=21% Similarity=0.490 Sum_probs=78.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEE
Q 043164 283 VAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFF 362 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V 362 (1049)
..++++|||+|||..+|+++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||+.| ||..|+|+.|.|
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~V 97 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGL--NGQDLMGQPISV 97 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHH--TTCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHh--cCCEECCcEEEE
Confidence 456789999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred eecC
Q 043164 363 EYSS 366 (1049)
Q Consensus 363 ~~A~ 366 (1049)
.++.
T Consensus 98 ~~a~ 101 (106)
T 1p27_B 98 DWCF 101 (106)
T ss_dssp EESE
T ss_pred Eeec
Confidence 9973
No 82
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=4.3e-15 Score=138.69 Aligned_cols=85 Identities=33% Similarity=0.441 Sum_probs=80.2
Q ss_pred CCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEE
Q 043164 445 GPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVA 524 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~ 524 (1049)
.++.+|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..|||..| +|+.|+|.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~V~ 88 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAEL--DGRELRVQ 88 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCB--TTBCCEEE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEE--CCcEEEEE
Confidence 3578999999999999999999999999999999999999999999999999999999999999999988 79999999
Q ss_pred EeecCCC
Q 043164 525 YAKSILG 531 (1049)
Q Consensus 525 ~Ak~k~~ 531 (1049)
||+....
T Consensus 89 ~a~~~~~ 95 (103)
T 2dnm_A 89 VARYGRR 95 (103)
T ss_dssp ECSSCCS
T ss_pred ECCcCCC
Confidence 9987644
No 83
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.58 E-value=7.4e-15 Score=137.19 Aligned_cols=83 Identities=22% Similarity=0.471 Sum_probs=77.7
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeE
Q 043164 281 YAVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKL 360 (1049)
Q Consensus 281 ~~~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i 360 (1049)
.+..+.++|||+|||..+|+++|+++|+.|| |..|.|+.++.+|.++|||||+|.+.++|.+|| .| |+..|.|+.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l--~g~~~~g~~l 85 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TY--DGALLGDRSL 85 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GG--TTCEETTEEC
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hh--CCCeECCeEE
Confidence 3445678999999999999999999999997 999999999999999999999999999999999 88 9999999999
Q ss_pred EEeecCC
Q 043164 361 FFEYSSK 367 (1049)
Q Consensus 361 ~V~~A~~ 367 (1049)
.|.++..
T Consensus 86 ~V~~a~~ 92 (103)
T 2dng_A 86 RVDIAEG 92 (103)
T ss_dssp EEEECCC
T ss_pred EEEEecC
Confidence 9999854
No 84
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=7.5e-15 Score=137.48 Aligned_cols=85 Identities=28% Similarity=0.411 Sum_probs=80.4
Q ss_pred CCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEE
Q 043164 445 GPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVA 524 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~ 524 (1049)
.+..+|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..|||..| +|+.|+|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~ 90 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKL--YGKPIRVN 90 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBC--SSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeE--CCeEEEEE
Confidence 4578999999999999999999999999999999999998999999999999999999999999999988 79999999
Q ss_pred EeecCCC
Q 043164 525 YAKSILG 531 (1049)
Q Consensus 525 ~Ak~k~~ 531 (1049)
||+++..
T Consensus 91 ~a~~~~~ 97 (105)
T 1x5u_A 91 KASAHNK 97 (105)
T ss_dssp ETTTTSC
T ss_pred ECCCCCc
Confidence 9988754
No 85
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.58 E-value=6e-15 Score=139.40 Aligned_cols=83 Identities=14% Similarity=0.436 Sum_probs=79.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEE
Q 043164 282 AVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLF 361 (1049)
Q Consensus 282 ~~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~ 361 (1049)
...++++|||+|||..+|+++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..| +|..|+|+.|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l~ 99 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEAL--NGAEIMGQTIQ 99 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHH--TTCEETTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHc--CCCEECCcEEE
Confidence 3466789999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred EeecC
Q 043164 362 FEYSS 366 (1049)
Q Consensus 362 V~~A~ 366 (1049)
|.++.
T Consensus 100 V~~a~ 104 (110)
T 1oo0_B 100 VDWCF 104 (110)
T ss_dssp EEESE
T ss_pred EEEcc
Confidence 99974
No 86
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.58 E-value=6.9e-15 Score=140.85 Aligned_cols=84 Identities=31% Similarity=0.596 Sum_probs=78.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEE
Q 043164 283 VAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFF 362 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V 362 (1049)
..+.++|||+|||..+|+++|+++|+.||.|..|.|+.++ +|.++|||||+|.+.++|.+||+.| ||..|+|+.|.|
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l--~g~~~~g~~l~V 80 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDM--NGKSLHGKAIKV 80 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHC--SSCBCSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHh--CCCEECCEEEEE
Confidence 3567899999999999999999999999999999999997 9999999999999999999999999 999999999999
Q ss_pred eecCCCC
Q 043164 363 EYSSKPT 369 (1049)
Q Consensus 363 ~~A~~p~ 369 (1049)
.++..+.
T Consensus 81 ~~a~~~~ 87 (116)
T 2fy1_A 81 EQAKKPS 87 (116)
T ss_dssp EECCCSS
T ss_pred EECCCCC
Confidence 9986443
No 87
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.58 E-value=2e-15 Score=140.62 Aligned_cols=82 Identities=24% Similarity=0.326 Sum_probs=77.9
Q ss_pred CcceEEEeCCCc------cCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCC-
Q 043164 446 PTHVLVVRGLDE------YADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNG- 518 (1049)
Q Consensus 446 ps~~LfV~NLp~------~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~G- 518 (1049)
..++|||+|||. .+++++|+++|++||.|..|.|+.++.|+.++|||||+|.+.++|.+||..|||..| +|
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~--~g~ 82 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRL--DLK 82 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBS--SSS
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCccc--CCC
Confidence 467999999999 999999999999999999999999999999999999999999999999999999999 67
Q ss_pred eEEEEEEeecC
Q 043164 519 QILRVAYAKSI 529 (1049)
Q Consensus 519 r~L~V~~Ak~k 529 (1049)
+.|+|.+|.++
T Consensus 83 r~l~V~~a~~~ 93 (100)
T 3ns6_A 83 HRLFLYTMKDV 93 (100)
T ss_dssp CBCEEEESHHH
T ss_pred eEEEEEECchh
Confidence 99999998764
No 88
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.58 E-value=5.7e-15 Score=133.36 Aligned_cols=83 Identities=19% Similarity=0.439 Sum_probs=77.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCC-ccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEE
Q 043164 284 APSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGV-SRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFF 362 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~-srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V 362 (1049)
..+++|||+|||..+|+++|+++|+.||.|..|.|+.++.++. ++|||||+|.+.++|.+||+.| ||..|+|+.|.|
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v 79 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHM--DGGQIDGQEITA 79 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHH--TTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHc--CCCeECCeEEEE
Confidence 3468999999999999999999999999999999999987766 9999999999999999999999 999999999999
Q ss_pred eecCCC
Q 043164 363 EYSSKP 368 (1049)
Q Consensus 363 ~~A~~p 368 (1049)
.++..+
T Consensus 80 ~~a~~~ 85 (88)
T 4a8x_A 80 TAVLAP 85 (88)
T ss_dssp EEECCC
T ss_pred EECCCC
Confidence 998543
No 89
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=5.6e-15 Score=136.80 Aligned_cols=84 Identities=24% Similarity=0.479 Sum_probs=79.2
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCee-eEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeE----
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIK-DLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQI---- 520 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~-~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~---- 520 (1049)
++++|||+|||..+++++|+++|++||.|. .|.|++++.++.++|||||+|.+.++|.+|+..|||..| +|+.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~~~~~ 85 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPL--PGATPAKR 85 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEE--SSCSSCEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCcc--CCCCccee
Confidence 578999999999999999999999999999 999999999999999999999999999999999999999 6888
Q ss_pred EEEEEeecCCC
Q 043164 521 LRVAYAKSILG 531 (1049)
Q Consensus 521 L~V~~Ak~k~~ 531 (1049)
|+|.||++...
T Consensus 86 l~v~~a~~~~~ 96 (99)
T 2div_A 86 FKLNYATYSGP 96 (99)
T ss_dssp CCEEETTCCSS
T ss_pred EEEeecCCCCC
Confidence 99999987643
No 90
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=3.5e-15 Score=137.90 Aligned_cols=83 Identities=17% Similarity=0.256 Sum_probs=78.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEe
Q 043164 284 APSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFE 363 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~ 363 (1049)
...++|||+|||..+|+++|+++|..||.|..+.++.++.+|.++|||||+|.+.++|.+||+.| |+..|+|+.|.|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l--~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDL--NDRPIGSRKVKLV 90 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHT--TTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHh--CCCeeCCeEEEEE
Confidence 45689999999999999999999999999999999999899999999999999999999999999 9999999999999
Q ss_pred ecCCC
Q 043164 364 YSSKP 368 (1049)
Q Consensus 364 ~A~~p 368 (1049)
++..+
T Consensus 91 ~a~~~ 95 (98)
T 2cqp_A 91 LGSGP 95 (98)
T ss_dssp ESSCS
T ss_pred EcCCC
Confidence 98544
No 91
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=9.2e-15 Score=138.84 Aligned_cols=84 Identities=23% Similarity=0.401 Sum_probs=78.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCee--------EEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCee
Q 043164 283 VAPSGTIVVKGLSQKTTEEDLYQILAEWGPLR--------HVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLV 354 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~--------~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~ 354 (1049)
..+.++|||+|||..+|+++|+++|+.||.|. .|.|+.++.+|.++|||||+|.+.++|.+||+.| |+..
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l--~g~~ 89 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWF--DGKD 89 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHH--TTCE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHc--CCCc
Confidence 35678999999999999999999999999998 6999999999999999999999999999999999 9999
Q ss_pred eCCeeEEEeecCCC
Q 043164 355 VDGRKLFFEYSSKP 368 (1049)
Q Consensus 355 i~Gr~i~V~~A~~p 368 (1049)
|.|+.|.|.++...
T Consensus 90 ~~g~~l~V~~a~~~ 103 (113)
T 2cpe_A 90 FQGSKLKVSLARKK 103 (113)
T ss_dssp ETTEECEEECSSCC
T ss_pred cCCCEEEEEECCCC
Confidence 99999999998543
No 92
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=5.9e-15 Score=138.34 Aligned_cols=81 Identities=22% Similarity=0.392 Sum_probs=72.5
Q ss_pred ccCCCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCee
Q 043164 280 HYAVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRK 359 (1049)
Q Consensus 280 ~~~~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~ 359 (1049)
.....++++|||+|||+.+|+++|+++|++||.|.+|.|+++ ||||||+|.+.++|..||+.|+.++..|.|++
T Consensus 10 ~~~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~ 83 (105)
T 1sjq_A 10 HGSGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQP 83 (105)
T ss_dssp --CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEE
T ss_pred cCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 345577899999999999999999999999999999999975 68999999999999999998844568999999
Q ss_pred EEEeecC
Q 043164 360 LFFEYSS 366 (1049)
Q Consensus 360 i~V~~A~ 366 (1049)
|.|.||.
T Consensus 84 l~V~~A~ 90 (105)
T 1sjq_A 84 IYIQFSN 90 (105)
T ss_dssp CCBCCCS
T ss_pred EEEEEcC
Confidence 9999984
No 93
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.57 E-value=1e-14 Score=136.52 Aligned_cols=81 Identities=22% Similarity=0.436 Sum_probs=76.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCC---eeE
Q 043164 284 APSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDG---RKL 360 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~G---r~i 360 (1049)
.++++|||+|||..+|+++|+++|+.||.|..|.|+.++ +|.++|||||+|.+.++|.+||+.| |+..|.| +.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l--~g~~~~gg~~~~l 89 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHAL--HGSQTMPGASSSL 89 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHH--SSCCCCTTCSSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHH--cCCccCCCCCccE
Confidence 567899999999999999999999999999999999997 8999999999999999999999999 9999998 999
Q ss_pred EEeecCC
Q 043164 361 FFEYSSK 367 (1049)
Q Consensus 361 ~V~~A~~ 367 (1049)
.|.++..
T Consensus 90 ~V~~a~~ 96 (105)
T 2dnh_A 90 VVKFADT 96 (105)
T ss_dssp EEEESCS
T ss_pred EEEECcc
Confidence 9999854
No 94
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.57 E-value=2e-14 Score=134.17 Aligned_cols=85 Identities=28% Similarity=0.371 Sum_probs=79.0
Q ss_pred CCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEE
Q 043164 445 GPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVA 524 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~ 524 (1049)
.+..+|||+|||..+++++|+++|++|| |..|.|++++.++.++|||||+|.+.++|.+|| .|||..| +|+.|+|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~--~g~~l~V~ 88 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALL--GDRSLRVD 88 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEE--TTEECEEE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeE--CCeEEEEE
Confidence 3578999999999999999999999997 999999999999999999999999999999999 8999999 79999999
Q ss_pred EeecCCCCC
Q 043164 525 YAKSILGPG 533 (1049)
Q Consensus 525 ~Ak~k~~~~ 533 (1049)
|++++....
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2dng_A 89 IAEGRKQDK 97 (103)
T ss_dssp ECCCCCCCC
T ss_pred EecCCCCCC
Confidence 998875543
No 95
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=1.8e-14 Score=136.15 Aligned_cols=85 Identities=29% Similarity=0.365 Sum_probs=80.0
Q ss_pred CCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhC------CCeeccCC
Q 043164 445 GPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATN------GTTLEKNG 518 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~Ln------G~~~~i~G 518 (1049)
.++.+|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..|| |..| +|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~--~g 90 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL--DG 90 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES--SS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEE--cC
Confidence 357899999999999999999999999999999999999999999999999999999999999999 8887 79
Q ss_pred eEEEEEEeecCCC
Q 043164 519 QILRVAYAKSILG 531 (1049)
Q Consensus 519 r~L~V~~Ak~k~~ 531 (1049)
+.|+|.|++++..
T Consensus 91 ~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 91 RQLKVDLAVTRDE 103 (111)
T ss_dssp CEEEEECCCCCCC
T ss_pred EEEEEEECCCCcc
Confidence 9999999988744
No 96
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.56 E-value=1.2e-14 Score=137.26 Aligned_cols=83 Identities=28% Similarity=0.414 Sum_probs=79.5
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~ 525 (1049)
++++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..|||..| +|+.|+|.|
T Consensus 25 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V~~ 102 (110)
T 1oo0_B 25 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI--MGQTIQVDW 102 (110)
T ss_dssp TBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE--CCcEEEEEE
Confidence 578999999999999999999999999999999999999999999999999999999999999999999 799999999
Q ss_pred eecCC
Q 043164 526 AKSIL 530 (1049)
Q Consensus 526 Ak~k~ 530 (1049)
|+++.
T Consensus 103 a~~~~ 107 (110)
T 1oo0_B 103 CFVKG 107 (110)
T ss_dssp SEESS
T ss_pred cccCC
Confidence 98864
No 97
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.56 E-value=5.4e-15 Score=144.39 Aligned_cols=83 Identities=35% Similarity=0.635 Sum_probs=79.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEE
Q 043164 282 AVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLF 361 (1049)
Q Consensus 282 ~~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~ 361 (1049)
...++++|||+|||..+|+++|+++|+.||+|..|.|+.++.+|.++|||||+|.+.++|.+||+.| ++..|+|+.|.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~l--ng~~i~g~~l~ 119 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA--NGMELDGRRIR 119 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHH--TTCCSSSSCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHh--CCCEECCEEEE
Confidence 3456789999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred EeecC
Q 043164 362 FEYSS 366 (1049)
Q Consensus 362 V~~A~ 366 (1049)
|.|+.
T Consensus 120 V~~a~ 124 (129)
T 2kxn_B 120 VDFSI 124 (129)
T ss_dssp ESCCS
T ss_pred EEEec
Confidence 99974
No 98
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.56 E-value=1.2e-14 Score=147.88 Aligned_cols=84 Identities=27% Similarity=0.402 Sum_probs=79.1
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~ 525 (1049)
++++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..|||..| +|+.|.|.|
T Consensus 71 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V~~ 148 (165)
T 1rk8_A 71 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI--MGQTIQVDW 148 (165)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEE--CCEEEEEEE
Confidence 568999999999999999999999999999999999999999999999999999999999999999998 799999999
Q ss_pred eecCCC
Q 043164 526 AKSILG 531 (1049)
Q Consensus 526 Ak~k~~ 531 (1049)
|+++..
T Consensus 149 a~~~~~ 154 (165)
T 1rk8_A 149 CFVKGP 154 (165)
T ss_dssp SEECC-
T ss_pred ecCCCC
Confidence 988754
No 99
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.56 E-value=8.5e-15 Score=134.43 Aligned_cols=80 Identities=25% Similarity=0.458 Sum_probs=76.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEE
Q 043164 283 VAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFF 362 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V 362 (1049)
..+.++|||+|||..+++++|+++|+.||+|..|.|+.++. |.++|||||+|.+.++|.+||+.| |+..|+|+.|.|
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~V 89 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALL--NGIRLYGRPINV 89 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHH--TTCEETTEECEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHh--CCCEECCCEEEE
Confidence 35568999999999999999999999999999999999975 999999999999999999999999 999999999999
Q ss_pred eec
Q 043164 363 EYS 365 (1049)
Q Consensus 363 ~~A 365 (1049)
.++
T Consensus 90 ~~a 92 (95)
T 2ywk_A 90 SGP 92 (95)
T ss_dssp ECC
T ss_pred EEc
Confidence 996
No 100
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.56 E-value=1.1e-14 Score=132.77 Aligned_cols=83 Identities=20% Similarity=0.276 Sum_probs=77.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEE
Q 043164 282 AVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLF 361 (1049)
Q Consensus 282 ~~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~ 361 (1049)
...+.++|||+|||..+|+++|+++|+.||.|..|.|+.+ +|.++|||||+|.+.++|.+||+.| ++..|+|+.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l--~g~~~~g~~l~ 79 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMM--NGMKLSGREID 79 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHH--TTCCBTTBCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHh--CCCEECCcEEE
Confidence 3467789999999999999999999999999999999984 8899999999999999999999999 99999999999
Q ss_pred EeecCCC
Q 043164 362 FEYSSKP 368 (1049)
Q Consensus 362 V~~A~~p 368 (1049)
|.++..+
T Consensus 80 v~~a~~~ 86 (92)
T 2dgv_A 80 VRIDRNA 86 (92)
T ss_dssp CEECSCC
T ss_pred EEEcCCC
Confidence 9998543
No 101
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.56 E-value=1.1e-14 Score=131.92 Aligned_cols=79 Identities=23% Similarity=0.406 Sum_probs=75.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEeec
Q 043164 286 SGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYS 365 (1049)
Q Consensus 286 s~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~A 365 (1049)
.++|||+|||..+|+++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|| .| ++..|.|+.|.|.++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~--~g~~~~g~~l~V~~a 82 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-AL--DESLFRGRQIKVIPK 82 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GG--TTCEETTEECEEEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hc--CCCEECCcEEEEEEc
Confidence 478999999999999999999999999999999999889999999999999999999999 88 999999999999997
Q ss_pred CC
Q 043164 366 SK 367 (1049)
Q Consensus 366 ~~ 367 (1049)
..
T Consensus 83 ~~ 84 (89)
T 3ucg_A 83 RT 84 (89)
T ss_dssp TT
T ss_pred cC
Confidence 43
No 102
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1.1e-14 Score=135.81 Aligned_cols=80 Identities=24% Similarity=0.467 Sum_probs=76.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEe
Q 043164 284 APSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFE 363 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~ 363 (1049)
.+.++|||+|||..+|+++|+++|+.||.|..|.|+.+ +|.++|||||+|.+.++|..||+.| |+..|.|+.|.|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM--NGRIVATKPLYVA 88 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHH--TTCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHh--CCCEeCCcEEEEE
Confidence 46789999999999999999999999999999999998 8999999999999999999999999 9999999999999
Q ss_pred ecCC
Q 043164 364 YSSK 367 (1049)
Q Consensus 364 ~A~~ 367 (1049)
++..
T Consensus 89 ~a~~ 92 (103)
T 2d9p_A 89 LAQR 92 (103)
T ss_dssp ECSS
T ss_pred Eecc
Confidence 9854
No 103
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=1.4e-14 Score=136.00 Aligned_cols=86 Identities=31% Similarity=0.433 Sum_probs=80.3
Q ss_pred CCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeec-CCCCceeeEEEEEeCCHHHHHHHHHHh-CCCeeccCCeEEE
Q 043164 445 GPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRD-KFTHVSRGFAFLHFHSVEDASKALEAT-NGTTLEKNGQILR 522 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD-~~tg~SrGfAFVeF~s~e~A~kAl~~L-nG~~~~i~Gr~L~ 522 (1049)
.++++|||+|||..+++++|+++|++||.|..|.|+++ +.++.++|||||+|.+.++|.+||..| ||..| +|+.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~--~g~~l~ 90 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHL--YGRRLV 90 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBS--SSCBCE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeE--CCCEEE
Confidence 35789999999999999999999999999999999999 789999999999999999999999999 89988 799999
Q ss_pred EEEeecCCCC
Q 043164 523 VAYAKSILGP 532 (1049)
Q Consensus 523 V~~Ak~k~~~ 532 (1049)
|.||+++...
T Consensus 91 v~~a~~~~~~ 100 (107)
T 2cph_A 91 LEWADSEVTV 100 (107)
T ss_dssp EEECCCCCCC
T ss_pred EEeCCCCCCC
Confidence 9999887543
No 104
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.56 E-value=1.1e-14 Score=131.45 Aligned_cols=81 Identities=27% Similarity=0.463 Sum_probs=75.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEE
Q 043164 282 AVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLF 361 (1049)
Q Consensus 282 ~~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~ 361 (1049)
...+.++|||+|||..+|+++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||+. ++..|+|+.|.
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~---~~~~~~g~~i~ 83 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ---KEHRLDGRVID 83 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS---SCEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh---CCCEECCEEEE
Confidence 345678999999999999999999999999999999999999999999999999999999999954 67889999999
Q ss_pred Eeec
Q 043164 362 FEYS 365 (1049)
Q Consensus 362 V~~A 365 (1049)
|.+|
T Consensus 84 v~~A 87 (87)
T 3s7r_A 84 PKKA 87 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9874
No 105
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.56 E-value=9.1e-15 Score=135.76 Aligned_cols=79 Identities=22% Similarity=0.257 Sum_probs=73.2
Q ss_pred CCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEE
Q 043164 445 GPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVA 524 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~ 524 (1049)
.|+.+|||+|||+.+++++|+++|++||.|..|.|+++ +|||||+|.+.++|.+|+..|+|..+.++|+.|.|.
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 36889999999999999999999999999999999863 689999999999999999999998766689999999
Q ss_pred EeecC
Q 043164 525 YAKSI 529 (1049)
Q Consensus 525 ~Ak~k 529 (1049)
|++++
T Consensus 93 ~S~~k 97 (100)
T 3r27_A 93 YSTSQ 97 (100)
T ss_dssp ECSCS
T ss_pred ecccc
Confidence 99875
No 106
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.56 E-value=2.3e-14 Score=134.17 Aligned_cols=84 Identities=26% Similarity=0.320 Sum_probs=78.3
Q ss_pred CCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCC---eEE
Q 043164 445 GPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNG---QIL 521 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~G---r~L 521 (1049)
.++++|||+|||..+++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|.+||..|||..| .| +.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~gg~~~~l 89 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQT--MPGASSSL 89 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCC--CTTCSSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCcc--CCCCCccE
Confidence 357899999999999999999999999999999999998 799999999999999999999999999988 45 999
Q ss_pred EEEEeecCCC
Q 043164 522 RVAYAKSILG 531 (1049)
Q Consensus 522 ~V~~Ak~k~~ 531 (1049)
+|.||+++..
T Consensus 90 ~V~~a~~~~~ 99 (105)
T 2dnh_A 90 VVKFADTDKE 99 (105)
T ss_dssp EEEESCSSCC
T ss_pred EEEECccCcc
Confidence 9999988754
No 107
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.56 E-value=2.5e-15 Score=136.96 Aligned_cols=82 Identities=18% Similarity=0.239 Sum_probs=72.5
Q ss_pred ceEEEeCCCccCcHHHHHHHhhccC--CeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEE
Q 043164 448 HVLVVRGLDEYADEEMLRYEFSKHA--PIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525 (1049)
Q Consensus 448 ~~LfV~NLp~~~teedLre~Fs~fG--~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~ 525 (1049)
.+|||+|||..+++++|+++|++|| .|..|.|+.++.+|.++|||||+|.+.++|.+||+.|||..| +|+.|+|.+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~--~gr~i~V~~ 79 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKREL--HGQNPVVTP 79 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCS--SSCCCEECC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCee--CCEEEEEEE
Confidence 3799999999999999999999999 999999999999999999999999999999999999999988 799999999
Q ss_pred eecCCC
Q 043164 526 AKSILG 531 (1049)
Q Consensus 526 Ak~k~~ 531 (1049)
+.+...
T Consensus 80 ~~~~~~ 85 (90)
T 3p5t_L 80 SNKLEH 85 (90)
T ss_dssp C-----
T ss_pred CCCCcc
Confidence 988643
No 108
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.56 E-value=1.4e-14 Score=134.35 Aligned_cols=81 Identities=25% Similarity=0.359 Sum_probs=77.1
Q ss_pred CCcceEEEeCCCccCcHHHHHHHhhccCCeee--------EEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeecc
Q 043164 445 GPTHVLVVRGLDEYADEEMLRYEFSKHAPIKD--------LRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEK 516 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~--------v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i 516 (1049)
.+.++|||+|||..+++++|+++|++||.|.. |.|+.++.++.++|||||+|.+.++|.+|++.|||..|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~-- 88 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF-- 88 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS--
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe--
Confidence 35789999999999999999999999999999 99999999999999999999999999999999999988
Q ss_pred CCeEEEEEEee
Q 043164 517 NGQILRVAYAK 527 (1049)
Q Consensus 517 ~Gr~L~V~~Ak 527 (1049)
+|+.|+|.||+
T Consensus 89 ~g~~l~V~~A~ 99 (99)
T 2la6_A 89 SGNPIKVSFAT 99 (99)
T ss_dssp SSSBCEEEECC
T ss_pred CCcEEEEEecC
Confidence 79999999975
No 109
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.5e-14 Score=137.26 Aligned_cols=86 Identities=22% Similarity=0.268 Sum_probs=80.5
Q ss_pred CCcceEEEeCCCccCcHHHHHHHhhccCCee--------eEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeecc
Q 043164 445 GPTHVLVVRGLDEYADEEMLRYEFSKHAPIK--------DLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEK 516 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLre~Fs~fG~I~--------~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i 516 (1049)
.+.++|||+|||..+++++|+++|++||.|. .|.|+.++.++.++|||||+|.+.++|.+||..|||..|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~-- 90 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF-- 90 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE--
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc--
Confidence 3578999999999999999999999999999 799999988999999999999999999999999999999
Q ss_pred CCeEEEEEEeecCCCC
Q 043164 517 NGQILRVAYAKSILGP 532 (1049)
Q Consensus 517 ~Gr~L~V~~Ak~k~~~ 532 (1049)
+|+.|+|.|++++...
T Consensus 91 ~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 91 QGSKLKVSLARKKPPM 106 (113)
T ss_dssp TTEECEEECSSCCCCS
T ss_pred CCCEEEEEECCCCCCC
Confidence 7999999999887543
No 110
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=9.5e-15 Score=136.51 Aligned_cols=83 Identities=18% Similarity=0.414 Sum_probs=78.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhh-cCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCee-eCCee
Q 043164 282 AVAPSGTIVVKGLSQKTTEEDLYQILAE-WGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLV-VDGRK 359 (1049)
Q Consensus 282 ~~~ps~~L~V~nLp~~~tee~L~~~F~~-~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~-i~Gr~ 359 (1049)
...++++|||+|||..+|+++|+++|+. ||.|..|.|+.++ +|.++|||||+|.+.++|.+||+.| ++.. |+|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l--~g~~~~~g~~ 81 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTEC--QGAVGLGSKP 81 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHT--TTCCSSSSSC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHc--cCCcccCCEe
Confidence 3467789999999999999999999999 9999999999998 9999999999999999999999999 9999 99999
Q ss_pred EEEeecCC
Q 043164 360 LFFEYSSK 367 (1049)
Q Consensus 360 i~V~~A~~ 367 (1049)
|.|.++..
T Consensus 82 l~v~~a~~ 89 (104)
T 2dhg_A 82 VRLSVAIP 89 (104)
T ss_dssp CCCCBCCC
T ss_pred EEEEEccC
Confidence 99999843
No 111
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.56 E-value=1.2e-14 Score=137.29 Aligned_cols=83 Identities=33% Similarity=0.412 Sum_probs=79.1
Q ss_pred CCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEE
Q 043164 445 GPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVA 524 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~ 524 (1049)
.++.+|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|||..| +|+.|+|.
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i--~g~~l~V~ 101 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL--AGRPMKVG 101 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCS--SSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEE--CCEEEEEE
Confidence 3568999999999999999999999999999999999999999999999999999999999999999988 79999999
Q ss_pred EeecC
Q 043164 525 YAKSI 529 (1049)
Q Consensus 525 ~Ak~k 529 (1049)
|++++
T Consensus 102 ~a~~k 106 (108)
T 2jrs_A 102 HVTER 106 (108)
T ss_dssp CSCSS
T ss_pred EcccC
Confidence 99876
No 112
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.55 E-value=8.9e-15 Score=141.70 Aligned_cols=84 Identities=20% Similarity=0.469 Sum_probs=79.6
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeE
Q 043164 281 YAVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKL 360 (1049)
Q Consensus 281 ~~~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i 360 (1049)
....++++|||+|||..+|+++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||+.| |+..|+|+.|
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l 94 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGL--NGQDLMGQPI 94 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHH--TTCBSSSSBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHh--CCCeeCCeEE
Confidence 34466789999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred EEeecC
Q 043164 361 FFEYSS 366 (1049)
Q Consensus 361 ~V~~A~ 366 (1049)
.|.|+.
T Consensus 95 ~v~~a~ 100 (126)
T 3ex7_B 95 SVDWCF 100 (126)
T ss_dssp EEEESE
T ss_pred EEEEec
Confidence 999984
No 113
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.55 E-value=1.2e-14 Score=139.10 Aligned_cols=85 Identities=36% Similarity=0.597 Sum_probs=79.5
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~ 525 (1049)
+..+|||+|||..+++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|.+|++.|||..| +|+.|+|.|
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~--~g~~l~V~~ 82 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSL--HGKAIKVEQ 82 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBC--SSSBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEE--CCEEEEEEE
Confidence 46799999999999999999999999999999999998 899999999999999999999999999998 799999999
Q ss_pred eecCCCCC
Q 043164 526 AKSILGPG 533 (1049)
Q Consensus 526 Ak~k~~~~ 533 (1049)
|+++....
T Consensus 83 a~~~~~~~ 90 (116)
T 2fy1_A 83 AKKPSFQS 90 (116)
T ss_dssp CCCSSCSS
T ss_pred CCCCCCCC
Confidence 98875433
No 114
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.55 E-value=7e-15 Score=140.77 Aligned_cols=81 Identities=19% Similarity=0.390 Sum_probs=77.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEE
Q 043164 283 VAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFF 362 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V 362 (1049)
..+.++|||+|||..+|+++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||+.| ||..|+|+.|.|
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~V 114 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAM--NGFQVGTKRLKV 114 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHC--CCCEETTEECCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHc--CCCEECCEEEEE
Confidence 356789999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred eec
Q 043164 363 EYS 365 (1049)
Q Consensus 363 ~~A 365 (1049)
.|+
T Consensus 115 ~~a 117 (118)
T 2khc_A 115 QLK 117 (118)
T ss_dssp EEC
T ss_pred Eec
Confidence 986
No 115
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2.1e-14 Score=134.39 Aligned_cols=85 Identities=22% Similarity=0.317 Sum_probs=79.0
Q ss_pred CCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCC-CceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEE
Q 043164 445 GPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFT-HVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRV 523 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~t-g~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V 523 (1049)
.+..+|||+|||..+++++|+++|++|| |..|.|+.++.+ +.++|||||+|.+.++|.+|| .|||..| +|+.|+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~--~g~~l~V 88 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESL--GNKRIRV 88 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEE--TTEECEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEe--CCcEEEE
Confidence 3568999999999999999999999999 999999999887 999999999999999999999 9999998 7999999
Q ss_pred EEeecCCCCC
Q 043164 524 AYAKSILGPG 533 (1049)
Q Consensus 524 ~~Ak~k~~~~ 533 (1049)
.||+++....
T Consensus 89 ~~a~~~~~~~ 98 (104)
T 1wi8_A 89 DVADQAQDKD 98 (104)
T ss_dssp EECCCCCCCC
T ss_pred EEccCCCCCC
Confidence 9998875443
No 116
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2.7e-15 Score=134.88 Aligned_cols=81 Identities=21% Similarity=0.386 Sum_probs=77.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEE
Q 043164 283 VAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFF 362 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V 362 (1049)
..++++|||+|||..+|+++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||+.| ||..|.|+.|+|
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~~~~ 79 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL--KASGVQAQMAKQ 79 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHH--HHHTCCEESCCS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHh--cCCeEeeEEEee
Confidence 357889999999999999999999999999999999999999999999999999999999999999 999999999998
Q ss_pred eec
Q 043164 363 EYS 365 (1049)
Q Consensus 363 ~~A 365 (1049)
.++
T Consensus 80 ~~~ 82 (85)
T 1x4e_A 80 SGP 82 (85)
T ss_dssp SCC
T ss_pred cCC
Confidence 874
No 117
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=4.7e-15 Score=138.52 Aligned_cols=80 Identities=25% Similarity=0.507 Sum_probs=77.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEee
Q 043164 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEY 364 (1049)
Q Consensus 285 ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~ 364 (1049)
+.++|||+|||..+|+++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||+.| ||..|.|+.|.|.+
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL--NGREFSGRALRVDN 84 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHS--SSBSCSSSCBEEEE
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHh--CCCeeCCcEEEEEe
Confidence 4579999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cC
Q 043164 365 SS 366 (1049)
Q Consensus 365 A~ 366 (1049)
+.
T Consensus 85 a~ 86 (104)
T 1p1t_A 85 AA 86 (104)
T ss_dssp TT
T ss_pred CC
Confidence 84
No 118
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.55 E-value=2.2e-14 Score=134.80 Aligned_cols=81 Identities=26% Similarity=0.335 Sum_probs=77.0
Q ss_pred CCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEE
Q 043164 445 GPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVA 524 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~ 524 (1049)
.++.+|||+|||..+++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|.+||..|||..| +|+.|+|.
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V~ 103 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPL--DGRPMNIQ 103 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEe--CCcEEEEE
Confidence 357899999999999999999999999999999999998 999999999999999999999999999999 79999999
Q ss_pred Eeec
Q 043164 525 YAKS 528 (1049)
Q Consensus 525 ~Ak~ 528 (1049)
||.+
T Consensus 104 ~a~s 107 (107)
T 3ulh_A 104 LVTS 107 (107)
T ss_dssp EECC
T ss_pred EeCC
Confidence 9863
No 119
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=3.2e-14 Score=132.80 Aligned_cols=83 Identities=22% Similarity=0.422 Sum_probs=75.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEE
Q 043164 282 AVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLF 361 (1049)
Q Consensus 282 ~~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~ 361 (1049)
...+.++|||+|||..+|+++|+++|+.||.|..|.|+.++. .++|||||+|.+.++|.+||+.| ++..|.|+.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~ 86 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAM--NGRKILGKEVK 86 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHH--TTEEETTEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHh--CCCCcCCCeEE
Confidence 345678999999999999999999999999999999999854 36899999999999999999999 99999999999
Q ss_pred EeecCCC
Q 043164 362 FEYSSKP 368 (1049)
Q Consensus 362 V~~A~~p 368 (1049)
|.++..+
T Consensus 87 V~~a~~~ 93 (103)
T 2cqi_A 87 VNWATTP 93 (103)
T ss_dssp EEECCCT
T ss_pred EEECCCC
Confidence 9998543
No 120
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.55 E-value=1.5e-14 Score=135.71 Aligned_cols=88 Identities=25% Similarity=0.292 Sum_probs=80.3
Q ss_pred CCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCee-ccCCeEEEE
Q 043164 445 GPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTL-EKNGQILRV 523 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~-~i~Gr~L~V 523 (1049)
.+..+|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..|||..+ ..+|+.|+|
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 90 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQV 90 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEE
Confidence 3578999999999999999999999999999999999999999999999999999999999999999875 224899999
Q ss_pred EEeecCCCC
Q 043164 524 AYAKSILGP 532 (1049)
Q Consensus 524 ~~Ak~k~~~ 532 (1049)
.||+++...
T Consensus 91 ~~a~~~~~~ 99 (106)
T 2dgp_A 91 KPADSESRG 99 (106)
T ss_dssp EECCCCSCC
T ss_pred EECCccccc
Confidence 999887543
No 121
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=6.3e-15 Score=138.18 Aligned_cols=78 Identities=17% Similarity=0.363 Sum_probs=74.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEe
Q 043164 284 APSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFE 363 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~ 363 (1049)
.+.++|||+|||+.+|+++|+++|+.||+|.+|.|+.++. |.++|||||+|.+.++|..||. + ++..|+|+.|.|.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~--~~~~~~gr~l~V~ 84 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-T--PGQKYKETDLLIL 84 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-S--SCCCCTTTTCEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-c--CCCEECCEEEEEE
Confidence 4568999999999999999999999999999999999986 9999999999999999999998 7 9999999999999
Q ss_pred ec
Q 043164 364 YS 365 (1049)
Q Consensus 364 ~A 365 (1049)
++
T Consensus 85 ~~ 86 (103)
T 1s79_A 85 FK 86 (103)
T ss_dssp EH
T ss_pred Ec
Confidence 85
No 122
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2.1e-14 Score=132.48 Aligned_cols=80 Identities=10% Similarity=0.243 Sum_probs=74.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCe
Q 043164 283 VAPSGTIVVKGLSQKTTEEDLY----QILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGR 358 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~~~tee~L~----~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr 358 (1049)
..+.++|||+|||..+++++|+ ++|+.||.|..|.|+.++.+ +|||||+|.+.++|.+||+.| ||..|+|+
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l--~g~~~~gr 80 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSL--HRYKIGSK 80 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHH--TTEEETTE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHh--CCCEECCe
Confidence 3456899999999999999999 99999999999999998765 899999999999999999999 99999999
Q ss_pred eEEEeecCC
Q 043164 359 KLFFEYSSK 367 (1049)
Q Consensus 359 ~i~V~~A~~ 367 (1049)
.|.|.++..
T Consensus 81 ~l~V~~a~~ 89 (96)
T 2dgx_A 81 KILVSLATG 89 (96)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEcCC
Confidence 999999843
No 123
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.55 E-value=2.9e-14 Score=140.51 Aligned_cols=86 Identities=31% Similarity=0.415 Sum_probs=80.8
Q ss_pred CCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEE
Q 043164 445 GPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVA 524 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~ 524 (1049)
.+.++|||+|||..+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||..|||..| +|+.|+|.
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~ 117 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNI--LNKRLKVA 117 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEEC--SSCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCeEEEEE
Confidence 4578999999999999999999999999999999999999999999999999999999999999999988 79999999
Q ss_pred EeecCCCC
Q 043164 525 YAKSILGP 532 (1049)
Q Consensus 525 ~Ak~k~~~ 532 (1049)
||+++...
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 99887543
No 124
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=2.1e-14 Score=134.00 Aligned_cols=84 Identities=32% Similarity=0.423 Sum_probs=78.7
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~ 525 (1049)
+.++|||+|||..+++++|+++|++||.|..|.|+.+ ++.++|||||+|.+.++|.+||..|||..| +|+.|.|.|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~V~~ 89 (103)
T 2d9p_A 14 QVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIV--ATKPLYVAL 89 (103)
T ss_dssp SCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBS--SSSBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEe--CCcEEEEEE
Confidence 5689999999999999999999999999999999998 889999999999999999999999999998 799999999
Q ss_pred eecCCCCC
Q 043164 526 AKSILGPG 533 (1049)
Q Consensus 526 Ak~k~~~~ 533 (1049)
|+++....
T Consensus 90 a~~~~~~~ 97 (103)
T 2d9p_A 90 AQRKEERQ 97 (103)
T ss_dssp CSSCCCCC
T ss_pred ecccccCC
Confidence 98875543
No 125
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=4.1e-14 Score=132.03 Aligned_cols=85 Identities=25% Similarity=0.405 Sum_probs=77.4
Q ss_pred CCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEE
Q 043164 445 GPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVA 524 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~ 524 (1049)
.+.++|||+|||..+++++|+++|++||.|..|.|+.++.+ ++|||||+|.+.++|.+||..|||..| +|+.|+|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V~ 88 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKI--LGKEVKVN 88 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEE--TTEEEEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCc--CCCeEEEE
Confidence 35789999999999999999999999999999999998543 689999999999999999999999998 79999999
Q ss_pred EeecCCCCC
Q 043164 525 YAKSILGPG 533 (1049)
Q Consensus 525 ~Ak~k~~~~ 533 (1049)
|++++....
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2cqi_A 89 WATTPSSQK 97 (103)
T ss_dssp ECCCTTCCC
T ss_pred ECCCCcccc
Confidence 998865433
No 126
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.55 E-value=5.6e-15 Score=129.55 Aligned_cols=75 Identities=23% Similarity=0.395 Sum_probs=72.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEeec
Q 043164 288 TIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYS 365 (1049)
Q Consensus 288 ~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~A 365 (1049)
+|||+|||..+|+++|+++|+.||+|..|.|+.++.+|.++|||||+|.+.++|.+||+ | ++..|+|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~--~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-I--HFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-S--SCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-C--CCCEECCEEEEEEeC
Confidence 59999999999999999999999999999999999899999999999999999999997 7 999999999999874
No 127
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.55 E-value=2.1e-14 Score=141.57 Aligned_cols=83 Identities=20% Similarity=0.454 Sum_probs=79.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEE
Q 043164 283 VAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFF 362 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V 362 (1049)
..+.++|||+|||..+|+++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||+.| |+..|.|+.|.|
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v 116 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGL--NGFNILNKRLKV 116 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHT--TTEECSSCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHh--CCCEECCeEEEE
Confidence 456689999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred eecCC
Q 043164 363 EYSSK 367 (1049)
Q Consensus 363 ~~A~~ 367 (1049)
.++..
T Consensus 117 ~~a~~ 121 (139)
T 1u6f_A 117 ALAAS 121 (139)
T ss_dssp EESSC
T ss_pred EECCC
Confidence 99854
No 128
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2.2e-14 Score=136.99 Aligned_cols=81 Identities=27% Similarity=0.448 Sum_probs=76.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEE
Q 043164 283 VAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFF 362 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V 362 (1049)
..+.++|||+|||..+|+++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||+.| ++ .|.|+.|.|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~--~~-~~~g~~l~V 90 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDP--NP-IIDGRKANV 90 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCS--SC-EETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhC--CC-cCCCEEEEE
Confidence 356789999999999999999999999999999999999999999999999999999999999998 77 899999999
Q ss_pred eecC
Q 043164 363 EYSS 366 (1049)
Q Consensus 363 ~~A~ 366 (1049)
.++.
T Consensus 91 ~~a~ 94 (116)
T 2cqd_A 91 NLAY 94 (116)
T ss_dssp EEST
T ss_pred EEcc
Confidence 9984
No 129
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.55 E-value=1.1e-14 Score=146.83 Aligned_cols=80 Identities=21% Similarity=0.378 Sum_probs=76.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcC--CeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEE
Q 043164 285 PSGTIVVKGLSQKTTEEDLYQILAEWG--PLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFF 362 (1049)
Q Consensus 285 ps~~L~V~nLp~~~tee~L~~~F~~~G--~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V 362 (1049)
..++|||+|||..+|+++|+++|+.|| .|..|.|+.|+.+|.++|||||+|.+.++|.+||+.| ||..|+|+.|.|
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~l--ng~~~~Gr~l~V 131 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELL--PGKVLNGEKVDV 131 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHS--TTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHc--CCCEECCeEeEE
Confidence 457999999999999999999999999 8999999999999999999999999999999999999 999999999999
Q ss_pred eecC
Q 043164 363 EYSS 366 (1049)
Q Consensus 363 ~~A~ 366 (1049)
.++.
T Consensus 132 ~~a~ 135 (156)
T 3n9u_C 132 RPAT 135 (156)
T ss_dssp EECC
T ss_pred EEcC
Confidence 9973
No 130
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.55 E-value=1.1e-14 Score=141.06 Aligned_cols=86 Identities=28% Similarity=0.427 Sum_probs=80.9
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~ 525 (1049)
++.+|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||+.|||..| +|+.|.|.|
T Consensus 21 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~~ 98 (126)
T 3ex7_B 21 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL--MGQPISVDW 98 (126)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBS--SSSBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCee--CCeEEEEEE
Confidence 568999999999999999999999999999999999999999999999999999999999999999998 799999999
Q ss_pred eecCCCCC
Q 043164 526 AKSILGPG 533 (1049)
Q Consensus 526 Ak~k~~~~ 533 (1049)
|+++..+.
T Consensus 99 a~~~~~~~ 106 (126)
T 3ex7_B 99 CFVRGPPK 106 (126)
T ss_dssp SEESSSCC
T ss_pred ecCCCCCC
Confidence 98875543
No 131
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.55 E-value=7.8e-15 Score=139.76 Aligned_cols=79 Identities=27% Similarity=0.524 Sum_probs=73.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEE
Q 043164 282 AVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLF 361 (1049)
Q Consensus 282 ~~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~ 361 (1049)
+..++++|||+|||..+|+++|+++|+.||.|..|.|+.+ +.++|||||+|.+.++|..||..| ||..|+|+.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~ 78 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHL--SGFNVSNRYLV 78 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHH--TTCBSSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHc--CCCEECCeEEE
Confidence 4467889999999999999999999999999999999875 456999999999999999999999 99999999999
Q ss_pred Eeec
Q 043164 362 FEYS 365 (1049)
Q Consensus 362 V~~A 365 (1049)
|.|+
T Consensus 79 v~~a 82 (115)
T 3lqv_A 79 VLYY 82 (115)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 9996
No 132
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.55 E-value=1.8e-14 Score=133.68 Aligned_cols=80 Identities=26% Similarity=0.466 Sum_probs=71.0
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeE
Q 043164 281 YAVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKL 360 (1049)
Q Consensus 281 ~~~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i 360 (1049)
....|+++|||+|||..+|+++|+++|++||.|.+|.|++. ||||||+|.+.++|..|++.|+...+.|.|++|
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i 89 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPA 89 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEE
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEE
Confidence 44578899999999999999999999999999999999853 689999999999999999999333456899999
Q ss_pred EEeecC
Q 043164 361 FFEYSS 366 (1049)
Q Consensus 361 ~V~~A~ 366 (1049)
.|+||+
T Consensus 90 ~V~~S~ 95 (100)
T 3r27_A 90 FVNYST 95 (100)
T ss_dssp EEEECS
T ss_pred EEEecc
Confidence 999974
No 133
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2.8e-14 Score=136.19 Aligned_cols=86 Identities=23% Similarity=0.303 Sum_probs=79.2
Q ss_pred CCCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEE
Q 043164 444 TGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRV 523 (1049)
Q Consensus 444 ~~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V 523 (1049)
..+.++|||+|||..+++++|+++|++||.|..|.|++++.++.++|||||+|.+.++|.+||..|++ .| +|+.|+|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~--~g~~l~V 90 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-II--DGRKANV 90 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EE--TTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cC--CCEEEEE
Confidence 34578999999999999999999999999999999999999999999999999999999999999998 67 7999999
Q ss_pred EEeecCCCC
Q 043164 524 AYAKSILGP 532 (1049)
Q Consensus 524 ~~Ak~k~~~ 532 (1049)
.||+....+
T Consensus 91 ~~a~~~~~~ 99 (116)
T 2cqd_A 91 NLAYLGAKP 99 (116)
T ss_dssp EESTTTCCC
T ss_pred EEcccCCCc
Confidence 999775433
No 134
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=3.6e-14 Score=132.44 Aligned_cols=82 Identities=23% Similarity=0.463 Sum_probs=75.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEE
Q 043164 282 AVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLF 361 (1049)
Q Consensus 282 ~~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~ 361 (1049)
...+.++|||+|||..+|+++|+++|+.||.|..|.|+.++. .++|||||+|.+.++|.+||..| ++..|+|+.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~ 86 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKL--HGTVVEGRKIE 86 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHH--TTCEETTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHh--CCCEECCEEEE
Confidence 345678999999999999999999999999999999999854 38999999999999999999999 99999999999
Q ss_pred EeecCC
Q 043164 362 FEYSSK 367 (1049)
Q Consensus 362 V~~A~~ 367 (1049)
|.++..
T Consensus 87 v~~a~~ 92 (103)
T 2cq3_A 87 VNNATA 92 (103)
T ss_dssp EEECCS
T ss_pred EEEccc
Confidence 999854
No 135
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.55 E-value=1.9e-14 Score=132.01 Aligned_cols=81 Identities=25% Similarity=0.394 Sum_probs=76.5
Q ss_pred CCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEE
Q 043164 445 GPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVA 524 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~ 524 (1049)
.+..+|||+|||..+++++|+++|++||.|..|.|+.++. +.++|||||+|.+.++|.+|+..|||..| +|+.|+|.
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V~ 90 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRL--YGRPINVS 90 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEE--CCCEEEEE
Confidence 3578999999999999999999999999999999999985 89999999999999999999999999999 79999999
Q ss_pred Eeec
Q 043164 525 YAKS 528 (1049)
Q Consensus 525 ~Ak~ 528 (1049)
||+.
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 9865
No 136
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.54 E-value=5.7e-15 Score=135.58 Aligned_cols=80 Identities=15% Similarity=0.224 Sum_probs=75.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEe
Q 043164 284 APSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFE 363 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~ 363 (1049)
.+.++|||+|||..+|+++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|.+||+.| |+..|+|+.|.|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l--~g~~~~gr~l~v~ 90 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDL--NDRPIGSRKVKLS 90 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHH--TTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHh--CCCeECCcEEEEE
Confidence 34589999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred ec
Q 043164 364 YS 365 (1049)
Q Consensus 364 ~A 365 (1049)
++
T Consensus 91 ~a 92 (95)
T 2ek1_A 91 GP 92 (95)
T ss_dssp CC
T ss_pred ec
Confidence 86
No 137
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.54 E-value=1.8e-14 Score=129.59 Aligned_cols=74 Identities=18% Similarity=0.263 Sum_probs=70.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEe
Q 043164 284 APSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFE 363 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~ 363 (1049)
-.+..|||+||++.+||++|+++|.+||+|.++.|+. ++|||||+|.+.++|.+|++.| |+..|.|++|.|.
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~L--n~~~l~gr~I~V~ 76 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMAL--NNCVLANTTIFAE 76 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHH--TTEEETTEEEEEE
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHh--cCCEECCcEEEEE
Confidence 3467899999999999999999999999999999975 5899999999999999999999 9999999999999
Q ss_pred ec
Q 043164 364 YS 365 (1049)
Q Consensus 364 ~A 365 (1049)
+|
T Consensus 77 ~A 78 (89)
T 2wbr_A 77 SP 78 (89)
T ss_dssp CC
T ss_pred EC
Confidence 97
No 138
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.54 E-value=1.9e-14 Score=137.48 Aligned_cols=80 Identities=31% Similarity=0.456 Sum_probs=74.6
Q ss_pred cceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEEe
Q 043164 447 THVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYA 526 (1049)
Q Consensus 447 s~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~A 526 (1049)
+.+|||+|||..+++++|+++|++||.|..|+|+.+. +.++|||||+|.+.++|.+||+.|||..| +|+.|+|.++
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~--~g~~i~V~~a 80 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLL--NDRKVFVGRF 80 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEE--TTEECEEEES
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEE--CCEEEEEEEC
Confidence 4589999999999999999999999999999999985 45899999999999999999999999999 7999999999
Q ss_pred ecCC
Q 043164 527 KSIL 530 (1049)
Q Consensus 527 k~k~ 530 (1049)
+++.
T Consensus 81 ~~~~ 84 (115)
T 4f25_A 81 KSRK 84 (115)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 8753
No 139
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.54 E-value=3.3e-14 Score=136.03 Aligned_cols=82 Identities=23% Similarity=0.293 Sum_probs=77.3
Q ss_pred CCCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEE
Q 043164 444 TGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRV 523 (1049)
Q Consensus 444 ~~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V 523 (1049)
..+.++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||+.|||..| +|+.|+|
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~V 114 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQV--GTKRLKV 114 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEE--TTEECCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEE--CCEEEEE
Confidence 34578999999999999999999999999999999999998999999999999999999999999999998 7999999
Q ss_pred EEee
Q 043164 524 AYAK 527 (1049)
Q Consensus 524 ~~Ak 527 (1049)
.|++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9975
No 140
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.54 E-value=6.8e-15 Score=143.88 Aligned_cols=82 Identities=28% Similarity=0.589 Sum_probs=77.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeE--EEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCe----eeC
Q 043164 283 VAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRH--VRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGL----VVD 356 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~--v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~----~i~ 356 (1049)
..+.++|||+|||+.+|+++|+++|+.||.|.. |+|++|+.+|.++|||||+|.+. +|.+||..| |+. .|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l--~g~~~~~~~~ 96 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQIL--QALHPPLTID 96 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHH--TTCCCSCCGG
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHh--cCCCCCccCC
Confidence 356789999999999999999999999999966 99999999999999999999999 999999999 999 999
Q ss_pred CeeEEEeecCC
Q 043164 357 GRKLFFEYSSK 367 (1049)
Q Consensus 357 Gr~i~V~~A~~ 367 (1049)
|+.|.|.++..
T Consensus 97 gr~l~V~~a~~ 107 (131)
T 2m2b_A 97 GKTINVEFAKG 107 (131)
T ss_dssp GCCCCCEECCC
T ss_pred CEEEEEEECCC
Confidence 99999999843
No 141
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=6.1e-14 Score=130.86 Aligned_cols=85 Identities=25% Similarity=0.358 Sum_probs=77.7
Q ss_pred CCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEE
Q 043164 445 GPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVA 524 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~ 524 (1049)
.+.++|||+|||..+++++|+++|++||.|..|.|+.+.. .++|||||+|.+.++|.+||..|||..| +|+.|+|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~ 88 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVV--EGRKIEVN 88 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEE--CCEEEEEE
Confidence 3568999999999999999999999999999999999864 3899999999999999999999999999 79999999
Q ss_pred EeecCCCCC
Q 043164 525 YAKSILGPG 533 (1049)
Q Consensus 525 ~Ak~k~~~~ 533 (1049)
|++++....
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2cq3_A 89 NATARVMTN 97 (103)
T ss_dssp ECCSSCCCC
T ss_pred EcccCCCCC
Confidence 998875443
No 142
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.8e-14 Score=131.65 Aligned_cols=82 Identities=18% Similarity=0.247 Sum_probs=75.9
Q ss_pred CcceEEEeCCCccCcHHHHH----HHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEE
Q 043164 446 PTHVLVVRGLDEYADEEMLR----YEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQIL 521 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLr----e~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L 521 (1049)
...+|||+|||..+++++|+ ++|++||.|..|.|+.++.+ +|||||+|.+.++|.+||..|||..| +|+.|
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~--~gr~l 82 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKI--GSKKI 82 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEE--TTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEE--CCeEE
Confidence 45799999999999999999 99999999999999998765 89999999999999999999999999 79999
Q ss_pred EEEEeecCCCC
Q 043164 522 RVAYAKSILGP 532 (1049)
Q Consensus 522 ~V~~Ak~k~~~ 532 (1049)
+|.||++...+
T Consensus 83 ~V~~a~~~~~~ 93 (96)
T 2dgx_A 83 LVSLATGASGP 93 (96)
T ss_dssp EEEECCCSSCC
T ss_pred EEEEcCCCCCC
Confidence 99999887544
No 143
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.54 E-value=2.3e-14 Score=144.16 Aligned_cols=84 Identities=25% Similarity=0.409 Sum_probs=79.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEE
Q 043164 282 AVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLF 361 (1049)
Q Consensus 282 ~~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~ 361 (1049)
...+.++|||+|||..+|+++|+++|+.||+|..|.|+.++.++.++|||||+|.+.++|.+||+.| |+..|+|+.|.
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l~ 112 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYI--NGTRLDDRIIR 112 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHT--TTSEETTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHh--CCCEECCeEEE
Confidence 3456799999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred EeecCC
Q 043164 362 FEYSSK 367 (1049)
Q Consensus 362 V~~A~~ 367 (1049)
|.|+..
T Consensus 113 V~~a~~ 118 (156)
T 1h2v_Z 113 TDWDAG 118 (156)
T ss_dssp EEEESC
T ss_pred EEECCC
Confidence 999854
No 144
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.54 E-value=2e-14 Score=131.17 Aligned_cols=84 Identities=24% Similarity=0.315 Sum_probs=78.0
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~ 525 (1049)
+..+|||+|||..+++++|+++|++||.|..|.|+++ ++.++|||||+|.+.++|.+|+..|||..| +|+.|+|.|
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~--~g~~l~v~~ 82 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKL--SGREIDVRI 82 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCB--TTBCCCCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCcEEEEEE
Confidence 5689999999999999999999999999999999985 788999999999999999999999999998 799999999
Q ss_pred eecCCCCC
Q 043164 526 AKSILGPG 533 (1049)
Q Consensus 526 Ak~k~~~~ 533 (1049)
+++...+.
T Consensus 83 a~~~~~~~ 90 (92)
T 2dgv_A 83 DRNASGPS 90 (92)
T ss_dssp CSCCSSCC
T ss_pred cCCCCCCC
Confidence 98875543
No 145
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=2.5e-14 Score=132.17 Aligned_cols=82 Identities=12% Similarity=0.120 Sum_probs=77.6
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~ 525 (1049)
...+|||+|||..+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+||..|||..| +|+.|+|.+
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~g~~l~V~~ 91 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPI--GSRKVKLVL 91 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEE--TTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCee--CCeEEEEEE
Confidence 467999999999999999999999999999999999988999999999999999999999999999998 799999999
Q ss_pred eecC
Q 043164 526 AKSI 529 (1049)
Q Consensus 526 Ak~k 529 (1049)
+...
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8764
No 146
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=3.9e-14 Score=134.57 Aligned_cols=82 Identities=18% Similarity=0.284 Sum_probs=77.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEE
Q 043164 282 AVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLF 361 (1049)
Q Consensus 282 ~~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~ 361 (1049)
...++++|||+|||..+|+++|+++|..||.|..|.|+.++ +|.++|||||+|.+.++|.+||+.| |+..|+|+.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~ 87 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMF--NGQLLFDRPMH 87 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHH--TTCEETTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHh--CCCEeCCCEEE
Confidence 34567899999999999999999999999999999999997 6999999999999999999999999 99999999999
Q ss_pred EeecC
Q 043164 362 FEYSS 366 (1049)
Q Consensus 362 V~~A~ 366 (1049)
|.++.
T Consensus 88 v~~a~ 92 (114)
T 2do0_A 88 VKMDE 92 (114)
T ss_dssp EEECS
T ss_pred EEEcc
Confidence 99984
No 147
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=2.2e-14 Score=134.32 Aligned_cols=82 Identities=23% Similarity=0.439 Sum_probs=77.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEE
Q 043164 283 VAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFF 362 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V 362 (1049)
..+.++|||+|||..+|+++|+++|+.||+|..|.|+.++.++.++|||||+|.+.++|.+||+. ++..|+|+.|.|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~---~~~~~~g~~l~V 89 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS---RPHTLDGRNIDP 89 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH---CSEEETTEEEBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh---CCCeECCEEEEE
Confidence 35668999999999999999999999999999999999999999999999999999999999975 899999999999
Q ss_pred eecCC
Q 043164 363 EYSSK 367 (1049)
Q Consensus 363 ~~A~~ 367 (1049)
.++..
T Consensus 90 ~~a~~ 94 (105)
T 2dh8_A 90 KPCTP 94 (105)
T ss_dssp CCSCC
T ss_pred EEccC
Confidence 99853
No 148
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.54 E-value=2.1e-14 Score=129.63 Aligned_cols=81 Identities=20% Similarity=0.346 Sum_probs=76.5
Q ss_pred cceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCc-eeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEE
Q 043164 447 THVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHV-SRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525 (1049)
Q Consensus 447 s~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~-SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~ 525 (1049)
+++|||+|||..+++++|+++|++||.|..|.|+.+..++. ++|||||+|.+.++|.+|+..|||..| +|+.|+|.+
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~~ 81 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQI--DGQEITATA 81 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeE--CCeEEEEEE
Confidence 56899999999999999999999999999999999987766 899999999999999999999999999 799999999
Q ss_pred eecC
Q 043164 526 AKSI 529 (1049)
Q Consensus 526 Ak~k 529 (1049)
+.+.
T Consensus 82 a~~~ 85 (88)
T 4a8x_A 82 VLAP 85 (88)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 9765
No 149
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=2.2e-14 Score=134.35 Aligned_cols=86 Identities=28% Similarity=0.342 Sum_probs=80.0
Q ss_pred CCCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEE
Q 043164 444 TGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRV 523 (1049)
Q Consensus 444 ~~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V 523 (1049)
..+..+|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||.. +|..| +|+.|.|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~--~g~~l~V 89 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTL--DGRNIDP 89 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEE--TTEEEBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeE--CCEEEEE
Confidence 34578999999999999999999999999999999999999999999999999999999999999 99888 7999999
Q ss_pred EEeecCCCC
Q 043164 524 AYAKSILGP 532 (1049)
Q Consensus 524 ~~Ak~k~~~ 532 (1049)
.|++++...
T Consensus 90 ~~a~~~~~~ 98 (105)
T 2dh8_A 90 KPCTPRGMQ 98 (105)
T ss_dssp CCSCCSSCC
T ss_pred EEccCCCCC
Confidence 999887543
No 150
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=5.1e-14 Score=128.29 Aligned_cols=80 Identities=23% Similarity=0.297 Sum_probs=75.7
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~ 525 (1049)
...+|||+|||..+++++|+++|+.| .|..|.|+.+ .++.++|||||+|.+.++|.+||. |||..| +|+.|.|.+
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~--~gr~i~v~~ 83 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYM--GGRYIEVFR 83 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEE--TTEEEEEEE
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCcee--CCcEEEEEE
Confidence 46799999999999999999999999 9999999999 689999999999999999999999 999999 799999999
Q ss_pred eecCC
Q 043164 526 AKSIL 530 (1049)
Q Consensus 526 Ak~k~ 530 (1049)
|+++.
T Consensus 84 a~~~~ 88 (91)
T 2dgw_A 84 EKSGP 88 (91)
T ss_dssp ESSCC
T ss_pred CCcCC
Confidence 98863
No 151
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=2.5e-14 Score=134.24 Aligned_cols=85 Identities=22% Similarity=0.526 Sum_probs=78.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeec-CCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeE
Q 043164 282 AVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKE-RNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKL 360 (1049)
Q Consensus 282 ~~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~d-k~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i 360 (1049)
...+.++|||+|||..+|+++|+++|+.||.|..|.|+.+ +.++.++|||||+|.+.++|.+||+.| .|+..|.|+.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l-~~~~~~~g~~l 89 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNAL-CHSTHLYGRRL 89 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHH-HTCCBSSSCBC
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHh-ccCCeECCCEE
Confidence 3456789999999999999999999999999999999999 789999999999999999999999987 25899999999
Q ss_pred EEeecCC
Q 043164 361 FFEYSSK 367 (1049)
Q Consensus 361 ~V~~A~~ 367 (1049)
.|.++..
T Consensus 90 ~v~~a~~ 96 (107)
T 2cph_A 90 VLEWADS 96 (107)
T ss_dssp EEEECCC
T ss_pred EEEeCCC
Confidence 9999854
No 152
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.4e-14 Score=133.70 Aligned_cols=80 Identities=19% Similarity=0.359 Sum_probs=72.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEE
Q 043164 282 AVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLF 361 (1049)
Q Consensus 282 ~~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~ 361 (1049)
...|+++|||+|||..+|+++|+++|++||.|..|.|+++ ||||||+|.+.++|..||+.|+.++..|.|++|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 84 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIY 84 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEE
Confidence 3467899999999999999999999999999999998865 7899999999999999999874467899999999
Q ss_pred EeecCC
Q 043164 362 FEYSSK 367 (1049)
Q Consensus 362 V~~A~~ 367 (1049)
|.|+..
T Consensus 85 V~~a~~ 90 (101)
T 2cq1_A 85 IQYSNH 90 (101)
T ss_dssp EEECSC
T ss_pred EEEcCc
Confidence 999853
No 153
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.53 E-value=3.4e-14 Score=139.82 Aligned_cols=81 Identities=36% Similarity=0.529 Sum_probs=76.4
Q ss_pred CCCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEE
Q 043164 444 TGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRV 523 (1049)
Q Consensus 444 ~~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V 523 (1049)
..+..+|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|||..| +|+.|+|
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v 137 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL--FGRTIRV 137 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEE--TTEEEEE
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEE--CCEEEEE
Confidence 44678999999999999999999999999999999999998999999999999999999999999999988 7999999
Q ss_pred EEe
Q 043164 524 AYA 526 (1049)
Q Consensus 524 ~~A 526 (1049)
.||
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 986
No 154
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.53 E-value=3.6e-14 Score=137.21 Aligned_cols=82 Identities=27% Similarity=0.430 Sum_probs=77.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEE
Q 043164 283 VAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFF 362 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V 362 (1049)
..++++|||+|||..+++++|+++|+.||.|..|.|+.++ +|.++|||||+|.+.++|..||+.| ++..|+|+.|.|
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l~V 108 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQY--KGVPLDGRPMDI 108 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHH--TTEESSSCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHc--CCCEECCcEEEE
Confidence 4567899999999999999999999999999999999998 9999999999999999999999999 999999999999
Q ss_pred eecCC
Q 043164 363 EYSSK 367 (1049)
Q Consensus 363 ~~A~~ 367 (1049)
.+|..
T Consensus 109 ~~a~~ 113 (124)
T 2kt5_A 109 QLVAS 113 (124)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 99853
No 155
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.53 E-value=2.4e-14 Score=129.69 Aligned_cols=80 Identities=23% Similarity=0.403 Sum_probs=76.7
Q ss_pred cceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEEe
Q 043164 447 THVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYA 526 (1049)
Q Consensus 447 s~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~A 526 (1049)
.++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+ .|||..| +|+.|+|.++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~--~g~~l~V~~a 82 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLF--RGRQIKVIPK 82 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEE--TTEECEEEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEE--CCcEEEEEEc
Confidence 468999999999999999999999999999999999989999999999999999999999 9999999 7999999999
Q ss_pred ecC
Q 043164 527 KSI 529 (1049)
Q Consensus 527 k~k 529 (1049)
++.
T Consensus 83 ~~~ 85 (89)
T 3ucg_A 83 RTN 85 (89)
T ss_dssp TTT
T ss_pred cCC
Confidence 875
No 156
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.53 E-value=4.8e-14 Score=141.86 Aligned_cols=84 Identities=31% Similarity=0.451 Sum_probs=80.0
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~ 525 (1049)
++++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..|||..| +|+.|+|.|
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V~~ 115 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRL--DDRIIRTDW 115 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEE--TTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE--CCeEEEEEE
Confidence 568999999999999999999999999999999999999999999999999999999999999999999 799999999
Q ss_pred eecCCC
Q 043164 526 AKSILG 531 (1049)
Q Consensus 526 Ak~k~~ 531 (1049)
|++...
T Consensus 116 a~~~~~ 121 (156)
T 1h2v_Z 116 DAGFKE 121 (156)
T ss_dssp ESCCCT
T ss_pred CCCCCC
Confidence 987644
No 157
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.7e-14 Score=137.20 Aligned_cols=78 Identities=24% Similarity=0.439 Sum_probs=75.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEeec
Q 043164 286 SGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYS 365 (1049)
Q Consensus 286 s~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~A 365 (1049)
.++|||+|||..+|+++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|| .| |+..|+|+.|.|.++
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l--~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GL--TGQRLLGVPIIVQAS 101 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HH--TTEEETTEEEEEEEH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-Hc--CCCEeCCeEEEEEec
Confidence 479999999999999999999999999999999999999999999999999999999999 88 999999999999997
Q ss_pred C
Q 043164 366 S 366 (1049)
Q Consensus 366 ~ 366 (1049)
.
T Consensus 102 ~ 102 (114)
T 2cq4_A 102 Q 102 (114)
T ss_dssp H
T ss_pred C
Confidence 3
No 158
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.53 E-value=2.6e-14 Score=140.63 Aligned_cols=81 Identities=20% Similarity=0.393 Sum_probs=76.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEE
Q 043164 283 VAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFF 362 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V 362 (1049)
..+.++|||+|||..+|+++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||+.| |+..|+|+.|.|
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v 137 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM--NESELFGRTIRV 137 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHS--TEEEETTEEEEE
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHh--CCCEECCEEEEE
Confidence 346789999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred eec
Q 043164 363 EYS 365 (1049)
Q Consensus 363 ~~A 365 (1049)
.+|
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 885
No 159
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.53 E-value=2.9e-14 Score=134.96 Aligned_cols=82 Identities=20% Similarity=0.346 Sum_probs=73.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEE
Q 043164 282 AVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLF 361 (1049)
Q Consensus 282 ~~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~ 361 (1049)
...+.++|||+|||..+|+++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||+.+ +..|+|+.|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~---~~~l~g~~l~ 97 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS---RHELDSKTID 97 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS---CEEETTEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC---CCcCCCEEEE
Confidence 3456789999999999999999999999999999999999999999999999999999999999875 4999999999
Q ss_pred EeecC
Q 043164 362 FEYSS 366 (1049)
Q Consensus 362 V~~A~ 366 (1049)
|.++.
T Consensus 98 V~~a~ 102 (109)
T 2rs2_A 98 PKVAF 102 (109)
T ss_dssp EEECC
T ss_pred EEEcc
Confidence 99974
No 160
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=2.2e-14 Score=134.00 Aligned_cols=84 Identities=29% Similarity=0.414 Sum_probs=78.8
Q ss_pred CCcceEEEeCCCccCcHHHHHHHhhc-cCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCe-eccCCeEEE
Q 043164 445 GPTHVLVVRGLDEYADEEMLRYEFSK-HAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTT-LEKNGQILR 522 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLre~Fs~-fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~-~~i~Gr~L~ 522 (1049)
.++.+|||+|||..+++++|+++|++ ||.|..|.|+.++ ++.++|||||+|.+.++|.+||..|||.. | +|+.|+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~--~g~~l~ 83 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGL--GSKPVR 83 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSS--SSSCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCccc--CCEeEE
Confidence 35689999999999999999999999 9999999999998 99999999999999999999999999998 7 799999
Q ss_pred EEEeecCCC
Q 043164 523 VAYAKSILG 531 (1049)
Q Consensus 523 V~~Ak~k~~ 531 (1049)
|.|++++..
T Consensus 84 v~~a~~~~~ 92 (104)
T 2dhg_A 84 LSVAIPKAS 92 (104)
T ss_dssp CCBCCCCCS
T ss_pred EEEccCCCc
Confidence 999987644
No 161
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.53 E-value=1.7e-14 Score=134.19 Aligned_cols=73 Identities=27% Similarity=0.497 Sum_probs=69.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEeecC
Q 043164 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYSS 366 (1049)
Q Consensus 287 ~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~A~ 366 (1049)
++|||+|||..+|+++|+++|+.||+|..|.|+.+ ++|||||+|.+.++|.+||+.| ++..|+|+.|.|.++.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~V~~a~ 73 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGL--DGKVICGSRVRVELST 73 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHH--HHSCSSSCCCEEEESS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHH--CCCeECCcEEEEEEcc
Confidence 47999999999999999999999999999999987 7889999999999999999999 9999999999999974
No 162
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=8.5e-15 Score=128.89 Aligned_cols=76 Identities=21% Similarity=0.398 Sum_probs=73.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEeec
Q 043164 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYS 365 (1049)
Q Consensus 287 ~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~A 365 (1049)
++|||+|||..+|+++|+++|+.||+|..|.|+.++.+|.++|||||+|.+.++|.+||+.+ + ..|+|+.|.|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~--~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS--R-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTT--T-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhC--C-CccCCEEEEEEec
Confidence 47999999999999999999999999999999999989999999999999999999999998 7 9999999999985
No 163
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=4.4e-14 Score=128.76 Aligned_cols=80 Identities=18% Similarity=0.337 Sum_probs=75.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEE
Q 043164 283 VAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFF 362 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V 362 (1049)
.....+|||+|||..+|+++|+++|+.| .|..|.|+.+ .+|.++|||||+|.+.++|.+||. | |+..|+|+.|.|
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~--~g~~~~gr~i~v 81 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-C--NREYMGGRYIEV 81 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-S--CSEEETTEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-h--CCceeCCcEEEE
Confidence 3566899999999999999999999999 9999999999 789999999999999999999999 9 999999999999
Q ss_pred eecCC
Q 043164 363 EYSSK 367 (1049)
Q Consensus 363 ~~A~~ 367 (1049)
.++..
T Consensus 82 ~~a~~ 86 (91)
T 2dgw_A 82 FREKS 86 (91)
T ss_dssp EEESS
T ss_pred EECCc
Confidence 99843
No 164
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.52 E-value=1.7e-14 Score=132.42 Aligned_cols=81 Identities=15% Similarity=0.128 Sum_probs=76.0
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~ 525 (1049)
+..+|||+|||..+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+||..|||..| +|+.|+|.+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~gr~l~v~~ 91 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPI--GSRKVKLSG 91 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeE--CCcEEEEEe
Confidence 457999999999999999999999999999999999988999999999999999999999999999999 799999999
Q ss_pred eec
Q 043164 526 AKS 528 (1049)
Q Consensus 526 Ak~ 528 (1049)
+.+
T Consensus 92 a~s 94 (95)
T 2ek1_A 92 PSS 94 (95)
T ss_dssp CC-
T ss_pred ccC
Confidence 764
No 165
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=7.1e-14 Score=130.38 Aligned_cols=81 Identities=30% Similarity=0.489 Sum_probs=75.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEE
Q 043164 283 VAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFF 362 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V 362 (1049)
..+.++|||+|||..+|+++|+++|..||+|..|.|+.++.+|.++|||||+|.+.++|.+||. ++..|+|+.|.|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~----~~~~~~g~~l~v 87 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS----QRHMIDGRWCDC 87 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH----SCEEETTEEEEE
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH----cCCeeCCeEEEE
Confidence 3567899999999999999999999999999999999999999999999999999999999997 467999999999
Q ss_pred eecCC
Q 043164 363 EYSSK 367 (1049)
Q Consensus 363 ~~A~~ 367 (1049)
.++..
T Consensus 88 ~~a~~ 92 (103)
T 2cqg_A 88 KLPNS 92 (103)
T ss_dssp ECCCT
T ss_pred EecCC
Confidence 99843
No 166
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2.1e-14 Score=135.28 Aligned_cols=82 Identities=17% Similarity=0.323 Sum_probs=77.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCC-eeEEEEe-ecCCCCCccceEEEEcCCHHHHHHHHHHhcCC--CeeeCCe
Q 043164 283 VAPSGTIVVKGLSQKTTEEDLYQILAEWGP-LRHVRVI-KERNSGVSRGFAFIDFPSVGAARAMMDRIGDD--GLVVDGR 358 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~~~tee~L~~~F~~~G~-i~~v~i~-~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~n--g~~i~Gr 358 (1049)
+.+.++|||+|||..+|+++|+++|..||. |..|.|+ .++.+|.++|||||+|.+.++|..||..| + ++.|+|+
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l--~~g~~~~~g~ 82 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKL--MPGRIQLWGH 82 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTT--TTCCSCBTTB
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHh--hCCCceecCC
Confidence 356789999999999999999999999998 9999999 88889999999999999999999999998 6 6999999
Q ss_pred eEEEeecC
Q 043164 359 KLFFEYSS 366 (1049)
Q Consensus 359 ~i~V~~A~ 366 (1049)
.|.|.|+.
T Consensus 83 ~l~V~~a~ 90 (109)
T 2dis_A 83 QIAVDWAE 90 (109)
T ss_dssp CCEEEESC
T ss_pred eEEEEEcC
Confidence 99999984
No 167
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=4e-14 Score=132.92 Aligned_cols=81 Identities=21% Similarity=0.192 Sum_probs=73.1
Q ss_pred CCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEE
Q 043164 445 GPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVA 524 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~ 524 (1049)
.|+++|||+|||..+++++|+++|++||.|..|.|+++ +|||||+|.+.++|.+|++.|++..+.++|+.|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 46789999999999999999999999999999999864 689999999999999999999876644589999999
Q ss_pred EeecCCC
Q 043164 525 YAKSILG 531 (1049)
Q Consensus 525 ~Ak~k~~ 531 (1049)
|++.+..
T Consensus 87 ~a~~~~~ 93 (104)
T 1wex_A 87 YSTSKRI 93 (104)
T ss_dssp ECSSSSC
T ss_pred EccCccc
Confidence 9987643
No 168
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.52 E-value=1.6e-14 Score=141.01 Aligned_cols=85 Identities=41% Similarity=0.611 Sum_probs=80.0
Q ss_pred CCCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEE
Q 043164 444 TGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRV 523 (1049)
Q Consensus 444 ~~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V 523 (1049)
..++++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..|||..| +|+.|+|
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i--~g~~l~V 120 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL--DGRRIRV 120 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCS--SSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE--CCEEEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999999988 7999999
Q ss_pred EEeecCC
Q 043164 524 AYAKSIL 530 (1049)
Q Consensus 524 ~~Ak~k~ 530 (1049)
.|++++.
T Consensus 121 ~~a~~~~ 127 (129)
T 2kxn_B 121 DFSITKR 127 (129)
T ss_dssp SCCSSSS
T ss_pred EEecCCC
Confidence 9998763
No 169
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=7.4e-14 Score=131.76 Aligned_cols=80 Identities=21% Similarity=0.348 Sum_probs=73.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEE
Q 043164 283 VAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFF 362 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V 362 (1049)
..+.++|||+|||..+|+++|+++|+.||.|..|.|+.+ +.++|||||+|.+.++|.+||+.| |+..|+|+.|.|
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~V 93 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGR--DGYDYDGYRLRV 93 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHH--TTCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHc--CCCEECCeEEEE
Confidence 356789999999999999999999999999999999654 568999999999999999999999 999999999999
Q ss_pred eecCC
Q 043164 363 EYSSK 367 (1049)
Q Consensus 363 ~~A~~ 367 (1049)
.++..
T Consensus 94 ~~a~~ 98 (109)
T 1x4a_A 94 EFPRS 98 (109)
T ss_dssp ECCCC
T ss_pred EEccc
Confidence 99854
No 170
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.52 E-value=2.9e-14 Score=143.85 Aligned_cols=82 Identities=20% Similarity=0.255 Sum_probs=77.3
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccC--CeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHA--PIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRV 523 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG--~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V 523 (1049)
...+|||+|||..+++++|+++|+.|| .|..|.|+.|+.+|.++|||||+|.+.++|.+||..|||..| +|+.|.|
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~--~Gr~l~V 131 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVL--NGEKVDV 131 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEE--TTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE--CCeEeEE
Confidence 357999999999999999999999999 999999999999999999999999999999999999999999 7999999
Q ss_pred EEeecC
Q 043164 524 AYAKSI 529 (1049)
Q Consensus 524 ~~Ak~k 529 (1049)
.+|.++
T Consensus 132 ~~a~~~ 137 (156)
T 3n9u_C 132 RPATRQ 137 (156)
T ss_dssp EECCHH
T ss_pred EEcCCC
Confidence 998764
No 171
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.3e-13 Score=128.71 Aligned_cols=85 Identities=24% Similarity=0.300 Sum_probs=77.4
Q ss_pred CCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEE
Q 043164 445 GPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVA 524 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~ 524 (1049)
.+.++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||. ++..| +|+.|.|.
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~--~g~~l~v~ 88 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMI--DGRWCDCK 88 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEE--TTEEEEEE
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCee--CCeEEEEE
Confidence 356899999999999999999999999999999999999999999999999999999999998 45566 89999999
Q ss_pred EeecCCCCC
Q 043164 525 YAKSILGPG 533 (1049)
Q Consensus 525 ~Ak~k~~~~ 533 (1049)
|++++....
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2cqg_A 89 LPNSKQSQD 97 (103)
T ss_dssp CCCTTCCCC
T ss_pred ecCCCCcCC
Confidence 998875543
No 172
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=3.3e-14 Score=132.93 Aligned_cols=80 Identities=16% Similarity=0.132 Sum_probs=72.0
Q ss_pred CCcceEEEeCCCc-cCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEE
Q 043164 445 GPTHVLVVRGLDE-YADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRV 523 (1049)
Q Consensus 445 ~ps~~LfV~NLp~-~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V 523 (1049)
.|+.+|||+|||+ .+++++|+++|++||.|..|.|+++ +|||||+|.+.++|..||+.||+..+.++|+.|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 3678999999999 9999999999999999999999976 47999999999999999999997653338999999
Q ss_pred EEeecCC
Q 043164 524 AYAKSIL 530 (1049)
Q Consensus 524 ~~Ak~k~ 530 (1049)
.||+...
T Consensus 87 ~~a~~~~ 93 (102)
T 1x4d_A 87 HLSQKYK 93 (102)
T ss_dssp EEECCCT
T ss_pred EECCCCC
Confidence 9998653
No 173
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2e-14 Score=134.49 Aligned_cols=81 Identities=22% Similarity=0.319 Sum_probs=74.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEE
Q 043164 283 VAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFF 362 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V 362 (1049)
..+..+|||+|||+.+|+++|+++|+.||.| .|.|+.++ +|+++|||||+|.+.++|.+|| .+ |+..|+|+.|.|
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~--~~~~~~gr~i~V 86 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AK--DKANMQHRYVEL 86 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TT--SSCCSSSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHH-Hh--CCCeECCcEEEE
Confidence 3556899999999999999999999999955 99999997 8999999999999999999999 56 999999999999
Q ss_pred eecCCC
Q 043164 363 EYSSKP 368 (1049)
Q Consensus 363 ~~A~~p 368 (1049)
..+..+
T Consensus 87 ~~~~~~ 92 (102)
T 1wez_A 87 FLNSTA 92 (102)
T ss_dssp EEECCC
T ss_pred EECCCC
Confidence 997544
No 174
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.52 E-value=1.3e-14 Score=141.77 Aligned_cols=84 Identities=23% Similarity=0.480 Sum_probs=78.3
Q ss_pred CCcceEEEeCCCccCcHHHHHHHhhccCCeee--EEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCC----eeccCC
Q 043164 445 GPTHVLVVRGLDEYADEEMLRYEFSKHAPIKD--LRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGT----TLEKNG 518 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~--v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~----~~~i~G 518 (1049)
.++++|||+|||+.+++++|+++|++||.|.. |+|++|+.++.++|||||+|.+. +|.+||..|||. .| +|
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~--~g 97 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI--DG 97 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG--GG
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccC--CC
Confidence 46789999999999999999999999999976 99999999999999999999999 999999999998 66 79
Q ss_pred eEEEEEEeecCCC
Q 043164 519 QILRVAYAKSILG 531 (1049)
Q Consensus 519 r~L~V~~Ak~k~~ 531 (1049)
+.|+|.||++...
T Consensus 98 r~l~V~~a~~~~~ 110 (131)
T 2m2b_A 98 KTINVEFAKGSKR 110 (131)
T ss_dssp CCCCCEECCCSCC
T ss_pred EEEEEEECCCCCC
Confidence 9999999988643
No 175
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=9.5e-14 Score=131.00 Aligned_cols=84 Identities=26% Similarity=0.358 Sum_probs=76.4
Q ss_pred CCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEE
Q 043164 445 GPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVA 524 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~ 524 (1049)
.+.++|||+|||..+++++|+++|++||.|..|.|+.+ +.++|||||+|.+.++|.+||+.|||..| +|+.|+|.
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~V~ 94 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDY--DGYRLRVE 94 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEE--CCeEEEEE
Confidence 35689999999999999999999999999999999764 45899999999999999999999999998 79999999
Q ss_pred EeecCCCCC
Q 043164 525 YAKSILGPG 533 (1049)
Q Consensus 525 ~Ak~k~~~~ 533 (1049)
|+++.....
T Consensus 95 ~a~~~~~~~ 103 (109)
T 1x4a_A 95 FPRSGRGTG 103 (109)
T ss_dssp CCCCCCCCC
T ss_pred EcccCCCCC
Confidence 998875543
No 176
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.52 E-value=6.7e-14 Score=126.33 Aligned_cols=78 Identities=26% Similarity=0.380 Sum_probs=73.2
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~ 525 (1049)
+.++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|++ +++..| +|+.|.|.+
T Consensus 10 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~--~g~~i~v~~ 86 (87)
T 3s7r_A 10 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRL--DGRVIDPKK 86 (87)
T ss_dssp CTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEE--TTEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEE--CCEEEEEEe
Confidence 56899999999999999999999999999999999999999999999999999999999996 577777 899999998
Q ss_pred e
Q 043164 526 A 526 (1049)
Q Consensus 526 A 526 (1049)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 6
No 177
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=3.1e-14 Score=135.07 Aligned_cols=84 Identities=17% Similarity=0.268 Sum_probs=77.4
Q ss_pred CcceEEEeCCCccCcHHHHH---HHhhccCCeeeEEEeecCCCC---ceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCe
Q 043164 446 PTHVLVVRGLDEYADEEMLR---YEFSKHAPIKDLRLVRDKFTH---VSRGFAFLHFHSVEDASKALEATNGTTLEKNGQ 519 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLr---e~Fs~fG~I~~v~I~rD~~tg---~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr 519 (1049)
+.++|||+|||..+++++|+ ++|++||.|..|.|+++..++ .++|||||+|.+.++|.+||+.|||..| +|+
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~--~gr 91 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVV--DGR 91 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEE--TTE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEE--CCE
Confidence 46799999999999999999 999999999999999987654 4569999999999999999999999998 799
Q ss_pred EEEEEEeecCCC
Q 043164 520 ILRVAYAKSILG 531 (1049)
Q Consensus 520 ~L~V~~Ak~k~~ 531 (1049)
.|+|.||+++..
T Consensus 92 ~l~V~~a~~k~~ 103 (111)
T 2cpi_A 92 TLKASLGTTKYC 103 (111)
T ss_dssp EEEEESCCCCSC
T ss_pred EEEEEecccccc
Confidence 999999998853
No 178
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=1.1e-13 Score=131.44 Aligned_cols=82 Identities=22% Similarity=0.240 Sum_probs=77.3
Q ss_pred CCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEE
Q 043164 445 GPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVA 524 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~ 524 (1049)
.++++|||+|||..+++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|.+||..|||..| +|+.|+|.
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~ 89 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLL--FDRPMHVK 89 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEe--CCCEEEEE
Confidence 357899999999999999999999999999999999997 689999999999999999999999999999 79999999
Q ss_pred EeecC
Q 043164 525 YAKSI 529 (1049)
Q Consensus 525 ~Ak~k 529 (1049)
|++..
T Consensus 90 ~a~~~ 94 (114)
T 2do0_A 90 MDERA 94 (114)
T ss_dssp ECSCC
T ss_pred EcccC
Confidence 98764
No 179
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.51 E-value=3.9e-14 Score=144.05 Aligned_cols=82 Identities=15% Similarity=0.444 Sum_probs=77.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEE
Q 043164 283 VAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFF 362 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V 362 (1049)
..++++|||+|||..+|+++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..| ||..|.|+.|.|
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l~V 146 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEAL--NGAEIMGQTIQV 146 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHH--TTCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHh--CCCEECCEEEEE
Confidence 456789999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred eecC
Q 043164 363 EYSS 366 (1049)
Q Consensus 363 ~~A~ 366 (1049)
.|+.
T Consensus 147 ~~a~ 150 (165)
T 1rk8_A 147 DWCF 150 (165)
T ss_dssp EESE
T ss_pred EEec
Confidence 9984
No 180
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.6e-14 Score=135.34 Aligned_cols=78 Identities=17% Similarity=0.232 Sum_probs=71.2
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCC--CeeccCCeEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNG--TTLEKNGQILRV 523 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG--~~~~i~Gr~L~V 523 (1049)
+..+|||+|||+.+++++|+++|++||.|..|.|+++ +|||||+|.+.++|.+|++.|++ ..| +|+.|+|
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l--~Gr~l~V 86 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVL--RGQPIYI 86 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEE--TTEECCB
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceE--CCEEEEE
Confidence 5689999999999999999999999999999999975 58999999999999999999875 566 7999999
Q ss_pred EEeecCCC
Q 043164 524 AYAKSILG 531 (1049)
Q Consensus 524 ~~Ak~k~~ 531 (1049)
.||+++..
T Consensus 87 ~~A~~~~~ 94 (105)
T 1sjq_A 87 QFSNHKEL 94 (105)
T ss_dssp CCCSSSSC
T ss_pred EEcCCCCC
Confidence 99988643
No 181
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=3.7e-14 Score=136.12 Aligned_cols=79 Identities=23% Similarity=0.399 Sum_probs=71.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEE
Q 043164 282 AVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLF 361 (1049)
Q Consensus 282 ~~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~ 361 (1049)
...|+++|||+|||+.+|+++|+++|++||.|.+|.|+.+ ||||||+|.+.++|..||+.|+.++..|.|++|.
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 4467899999999999999999999999999999999976 6899999999999999999883335789999999
Q ss_pred EeecC
Q 043164 362 FEYSS 366 (1049)
Q Consensus 362 V~~A~ 366 (1049)
|.||.
T Consensus 101 V~~a~ 105 (119)
T 2ad9_A 101 IQFSN 105 (119)
T ss_dssp EEECS
T ss_pred EEEcc
Confidence 99984
No 182
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=4.9e-14 Score=132.30 Aligned_cols=80 Identities=25% Similarity=0.467 Sum_probs=71.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEE
Q 043164 282 AVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLF 361 (1049)
Q Consensus 282 ~~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~ 361 (1049)
...|+++|||+|||..+|+++|+++|++||.|..|.|+++ ||||||+|.+.++|..||+.|+.+++.|.|++|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~ 84 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAF 84 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 3467899999999999999999999999999999999864 6899999999999999999884455679999999
Q ss_pred EeecCC
Q 043164 362 FEYSSK 367 (1049)
Q Consensus 362 V~~A~~ 367 (1049)
|.|+..
T Consensus 85 V~~a~~ 90 (104)
T 1wex_A 85 FNYSTS 90 (104)
T ss_dssp EEECSS
T ss_pred EEEccC
Confidence 999853
No 183
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.51 E-value=2.7e-14 Score=128.45 Aligned_cols=73 Identities=22% Similarity=0.301 Sum_probs=69.1
Q ss_pred cceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEEe
Q 043164 447 THVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYA 526 (1049)
Q Consensus 447 s~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~A 526 (1049)
+..|||+||++.+||++|+++|.+||+|..++|+. ++|||||+|.+.++|.+|++.|||..| +|+.|+|.+|
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l--~gr~I~V~~A 78 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVL--ANTTIFAESP 78 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEE--TTEEEEEECC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEE--CCcEEEEEEC
Confidence 56899999999999999999999999999999975 589999999999999999999999999 7999999998
Q ss_pred e
Q 043164 527 K 527 (1049)
Q Consensus 527 k 527 (1049)
.
T Consensus 79 ~ 79 (89)
T 2wbr_A 79 S 79 (89)
T ss_dssp C
T ss_pred C
Confidence 4
No 184
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=2.2e-14 Score=133.87 Aligned_cols=82 Identities=32% Similarity=0.449 Sum_probs=78.3
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~ 525 (1049)
+.++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|++.|||..| +|+.|+|.|
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~~ 84 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREF--SGRALRVDN 84 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSC--SSSCBEEEE
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCee--CCcEEEEEe
Confidence 457999999999999999999999999999999999998999999999999999999999999999988 799999999
Q ss_pred eecC
Q 043164 526 AKSI 529 (1049)
Q Consensus 526 Ak~k 529 (1049)
|++.
T Consensus 85 a~~~ 88 (104)
T 1p1t_A 85 AASE 88 (104)
T ss_dssp TTCT
T ss_pred CCCc
Confidence 8875
No 185
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=8.9e-15 Score=141.58 Aligned_cols=80 Identities=13% Similarity=0.165 Sum_probs=74.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEe
Q 043164 284 APSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFE 363 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~ 363 (1049)
.+..+|||+|||+.+|+++|+++|..||.|..+.++.+..+|.++|||||+|.+.++|.+||+ | |+..|+|+.|.|.
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~--~g~~~~gr~i~V~ 99 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-R--HKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-S--CSBCSTTSCBEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-h--CCCeECCcEEEEE
Confidence 456899999999999999999999999999987777777899999999999999999999998 8 9999999999999
Q ss_pred ecC
Q 043164 364 YSS 366 (1049)
Q Consensus 364 ~A~ 366 (1049)
++.
T Consensus 100 ~a~ 102 (124)
T 1wel_A 100 PIT 102 (124)
T ss_dssp EEC
T ss_pred ECC
Confidence 973
No 186
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=1e-13 Score=129.00 Aligned_cols=85 Identities=36% Similarity=0.532 Sum_probs=77.0
Q ss_pred CCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEE
Q 043164 445 GPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVA 524 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~ 524 (1049)
.++++|||+|||..+++++|+++|+.| ..|.|+.++.++.++|||||+|.+.++|.+||..|||..| +|+.|+|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~V~ 87 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI--DGNKVTLD 87 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeE--CCeEEEEE
Confidence 357899999999999999999999977 3788888888999999999999999999999999999998 79999999
Q ss_pred EeecCCCCCC
Q 043164 525 YAKSILGPGS 534 (1049)
Q Consensus 525 ~Ak~k~~~~~ 534 (1049)
||+++...+.
T Consensus 88 ~a~~~~~~~~ 97 (102)
T 2fc8_A 88 WAKPKGEGGS 97 (102)
T ss_dssp ECCCCCSSSC
T ss_pred EecCCCCCCC
Confidence 9998765443
No 187
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.51 E-value=1.6e-14 Score=134.38 Aligned_cols=81 Identities=17% Similarity=0.347 Sum_probs=73.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecC-CCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeE
Q 043164 282 AVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKER-NSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKL 360 (1049)
Q Consensus 282 ~~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk-~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i 360 (1049)
...+.++|||+|||..+|+++|+++|+.|| |..|.|+.++ .+|.++|||||+|.+.++|.+|| .| +|..|+|+.|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l--~g~~~~g~~l 90 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SL--NEESLGNRRI 90 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HT--TTCCBTTBCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hc--CCCEECCeEE
Confidence 345678999999999999999999999999 9999999998 69999999999999999999999 88 9999999999
Q ss_pred EEeecC
Q 043164 361 FFEYSS 366 (1049)
Q Consensus 361 ~V~~A~ 366 (1049)
.|.++.
T Consensus 91 ~V~~a~ 96 (100)
T 2j76_E 91 RVDVAD 96 (100)
T ss_dssp CCEECC
T ss_pred EEEecc
Confidence 999973
No 188
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=7.3e-14 Score=129.81 Aligned_cols=81 Identities=27% Similarity=0.440 Sum_probs=73.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEE
Q 043164 282 AVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLF 361 (1049)
Q Consensus 282 ~~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~ 361 (1049)
...+.++|||+|||..+|+++|+++|+.||.| .|+.+ .++.++|||||+|.+.++|.+||+.| |+..|.|+.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~ 84 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSC--NKREIEGRAIR 84 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHT--SSEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHh--CCCEeCCeEEE
Confidence 34567899999999999999999999999977 56666 68999999999999999999999999 99999999999
Q ss_pred EeecCCC
Q 043164 362 FEYSSKP 368 (1049)
Q Consensus 362 V~~A~~p 368 (1049)
|.++..+
T Consensus 85 v~~a~~~ 91 (101)
T 2fc9_A 85 LELQGPR 91 (101)
T ss_dssp EEECSSC
T ss_pred EEEcCCC
Confidence 9998543
No 189
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.50 E-value=6e-14 Score=141.24 Aligned_cols=82 Identities=29% Similarity=0.522 Sum_probs=78.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEe
Q 043164 284 APSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFE 363 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~ 363 (1049)
.+..+|||+|||..+|+++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||+.| ||..|.|+.|.|.
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v~ 145 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM--DGAVLDGRELRVQ 145 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHS--TTEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHh--CCCEECCeEEEEE
Confidence 45689999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred ecCC
Q 043164 364 YSSK 367 (1049)
Q Consensus 364 ~A~~ 367 (1049)
++..
T Consensus 146 ~a~~ 149 (158)
T 2kn4_A 146 MARY 149 (158)
T ss_dssp EECC
T ss_pred ECCC
Confidence 9853
No 190
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=6.8e-14 Score=130.65 Aligned_cols=79 Identities=18% Similarity=0.208 Sum_probs=71.2
Q ss_pred CCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhC--CCeeccCCeEEE
Q 043164 445 GPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATN--GTTLEKNGQILR 522 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~Ln--G~~~~i~Gr~L~ 522 (1049)
.|+++|||+|||..+++++|+++|++||.|..|.|+++ +|||||+|.+.++|.+|++.|+ +..| +|+.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~--~Gr~l~ 84 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHL--RNQPIY 84 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEE--TTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceE--CCcEEE
Confidence 46789999999999999999999999999999999875 6899999999999999999886 4556 799999
Q ss_pred EEEeecCCC
Q 043164 523 VAYAKSILG 531 (1049)
Q Consensus 523 V~~Ak~k~~ 531 (1049)
|.||+.+..
T Consensus 85 V~~a~~~~~ 93 (101)
T 2cq1_A 85 IQYSNHKEL 93 (101)
T ss_dssp EEECSCSSC
T ss_pred EEEcCcccC
Confidence 999987643
No 191
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=1.1e-13 Score=128.59 Aligned_cols=84 Identities=31% Similarity=0.483 Sum_probs=75.1
Q ss_pred CCCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEE
Q 043164 444 TGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRV 523 (1049)
Q Consensus 444 ~~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V 523 (1049)
..++++|||+|||..+++++|+++|++||.| .|+.+ .++.++|||||+|.+.++|.+||..|||..| +|+.|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v 85 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREI--EGRAIRL 85 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEE--TTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEe--CCeEEEE
Confidence 3467899999999999999999999999987 56666 5788999999999999999999999999998 7999999
Q ss_pred EEeecCCCCC
Q 043164 524 AYAKSILGPG 533 (1049)
Q Consensus 524 ~~Ak~k~~~~ 533 (1049)
.|++++..+.
T Consensus 86 ~~a~~~~~~~ 95 (101)
T 2fc9_A 86 ELQGPRGSPN 95 (101)
T ss_dssp EECSSCCCCC
T ss_pred EEcCCCCCCC
Confidence 9998875543
No 192
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=4.9e-14 Score=134.54 Aligned_cols=84 Identities=25% Similarity=0.395 Sum_probs=78.7
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~ 525 (1049)
+.++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||.. +|..| +|+.|+|.|
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~--~g~~l~V~~ 102 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSI--DGRVVEPKR 102 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEE--TTEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEE--CCEEEEEEE
Confidence 467999999999999999999999999999999999999999999999999999999999998 88888 799999999
Q ss_pred eecCCCC
Q 043164 526 AKSILGP 532 (1049)
Q Consensus 526 Ak~k~~~ 532 (1049)
|+++...
T Consensus 103 a~~~~~~ 109 (116)
T 1x4b_A 103 AVAREES 109 (116)
T ss_dssp CSSCCCC
T ss_pred CCCCccC
Confidence 9887543
No 193
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.50 E-value=4.5e-14 Score=136.36 Aligned_cols=79 Identities=20% Similarity=0.398 Sum_probs=75.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEeec
Q 043164 286 SGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYS 365 (1049)
Q Consensus 286 s~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~A 365 (1049)
.++|||+|||..+|+++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|..|| .| +|..|+|+.|.|.++
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l--~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AM--DETVFRGRTIKVLPK 112 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TT--TTCEETTEECEEEES
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hc--CCCeECCeEEEEEEC
Confidence 479999999999999999999999999999999999999999999999999999999999 78 999999999999997
Q ss_pred CC
Q 043164 366 SK 367 (1049)
Q Consensus 366 ~~ 367 (1049)
..
T Consensus 113 ~~ 114 (124)
T 2jwn_A 113 RT 114 (124)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 194
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=4.9e-14 Score=134.02 Aligned_cols=80 Identities=21% Similarity=0.456 Sum_probs=75.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeee--------
Q 043164 284 APSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVV-------- 355 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i-------- 355 (1049)
.+.++|||+|||..+|+++|+++|+.||.|..|.|+.++ +|.++|||||+|.+.++|.+||+.| ||..|
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l--~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHF--NGKFIKTPPGVSA 99 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHH--BTCCCCCCTTSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHh--CCCEEcCCccccC
Confidence 456899999999999999999999999999999999998 9999999999999999999999999 99999
Q ss_pred CCeeEEEeecC
Q 043164 356 DGRKLFFEYSS 366 (1049)
Q Consensus 356 ~Gr~i~V~~A~ 366 (1049)
.+++|.|.|+.
T Consensus 100 ~~~~l~v~~a~ 110 (114)
T 1x5o_A 100 PTEPLLCKFSG 110 (114)
T ss_dssp CSSCBEEEECC
T ss_pred CCCceeEEccC
Confidence 57889999974
No 195
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=2.7e-14 Score=135.85 Aligned_cols=81 Identities=20% Similarity=0.322 Sum_probs=77.2
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~ 525 (1049)
..++|||+|||..+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|| .|||..| +|+.|+|.|
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~--~g~~l~V~~ 100 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRL--LGVPIIVQA 100 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEE--TTEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEe--CCeEEEEEe
Confidence 3679999999999999999999999999999999999999999999999999999999999 9999998 799999999
Q ss_pred eecC
Q 043164 526 AKSI 529 (1049)
Q Consensus 526 Ak~k 529 (1049)
++++
T Consensus 101 a~~~ 104 (114)
T 2cq4_A 101 SQAE 104 (114)
T ss_dssp HHHH
T ss_pred cCCC
Confidence 8775
No 196
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.50 E-value=4.2e-14 Score=132.78 Aligned_cols=80 Identities=18% Similarity=0.324 Sum_probs=74.2
Q ss_pred CCCCceEEEcCCCCCC------CHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeC
Q 043164 283 VAPSGTIVVKGLSQKT------TEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVD 356 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~~~------tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~ 356 (1049)
...+++|||+|||..+ |+++|+++|+.||.|..|.|+ +.+|.++|||||+|.+.++|..||..| ||..|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l--~g~~~~ 87 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNA--DGYKLD 87 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHC--SSEECS
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHh--CCcccC
Confidence 3456899999999999 789999999999999999998 468999999999999999999999999 999999
Q ss_pred Ce-eEEEeecC
Q 043164 357 GR-KLFFEYSS 366 (1049)
Q Consensus 357 Gr-~i~V~~A~ 366 (1049)
|+ .|.|.++.
T Consensus 88 g~~~l~V~~a~ 98 (105)
T 2nlw_A 88 KQHTFRVNLFT 98 (105)
T ss_dssp TTCEEEEECSC
T ss_pred CCceEEEEEcc
Confidence 98 99999974
No 197
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=4.8e-14 Score=133.74 Aligned_cols=81 Identities=19% Similarity=0.351 Sum_probs=75.2
Q ss_pred CCCceEEEcCCCCCCCHHHHH---HHHhhcCCeeEEEEeecCCCC---CccceEEEEcCCHHHHHHHHHHhcCCCeeeCC
Q 043164 284 APSGTIVVKGLSQKTTEEDLY---QILAEWGPLRHVRVIKERNSG---VSRGFAFIDFPSVGAARAMMDRIGDDGLVVDG 357 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~---~~F~~~G~i~~v~i~~dk~tg---~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~G 357 (1049)
.+.++|||+|||+.+++++|+ ++|++||+|..|.|+.++.++ .++|||||+|.+.++|.+||+.| |+..|+|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~l--ng~~~~g 90 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCV--NNVVVDG 90 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHH--TTEEETT
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHh--CCCEECC
Confidence 456899999999999999999 999999999999999987754 56699999999999999999999 9999999
Q ss_pred eeEEEeecC
Q 043164 358 RKLFFEYSS 366 (1049)
Q Consensus 358 r~i~V~~A~ 366 (1049)
+.|.|.++.
T Consensus 91 r~l~V~~a~ 99 (111)
T 2cpi_A 91 RTLKASLGT 99 (111)
T ss_dssp EEEEEESCC
T ss_pred EEEEEEecc
Confidence 999999984
No 198
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.50 E-value=9e-15 Score=132.94 Aligned_cols=78 Identities=19% Similarity=0.404 Sum_probs=74.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEeecC
Q 043164 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYSS 366 (1049)
Q Consensus 287 ~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~A~ 366 (1049)
++|||+|||..+++++|+++|+.||+|..|.|+.++.+|.++|||||+|.+.+ |..|+..| ||..|+|+.|.|.+|.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l--~g~~~~g~~l~V~~a~ 78 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKL--DNTDFMGRTIRVTEAN 78 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTS--CSSCCSSSSCSEEEC-
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHh--CCCEECCeEEEEEEcC
Confidence 58999999999999999999999999999999999999999999999999999 99999999 9999999999999984
Q ss_pred C
Q 043164 367 K 367 (1049)
Q Consensus 367 ~ 367 (1049)
.
T Consensus 79 ~ 79 (90)
T 2ki2_A 79 P 79 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 199
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=7.6e-14 Score=133.17 Aligned_cols=79 Identities=32% Similarity=0.483 Sum_probs=75.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEeec
Q 043164 286 SGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYS 365 (1049)
Q Consensus 286 s~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~A 365 (1049)
.++|||+|||..+|+++|+++|..||.|..|.|+.++.+|.++|||||+|.+.++|.+||+. ++..|+|+.|.|.++
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~---~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA---RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS---CSEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh---CCcEECCEEEEEEEC
Confidence 47999999999999999999999999999999999999999999999999999999999964 899999999999998
Q ss_pred CC
Q 043164 366 SK 367 (1049)
Q Consensus 366 ~~ 367 (1049)
..
T Consensus 104 ~~ 105 (116)
T 1x4b_A 104 VA 105 (116)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 200
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.50 E-value=9.3e-14 Score=134.27 Aligned_cols=84 Identities=24% Similarity=0.309 Sum_probs=79.0
Q ss_pred CCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEE
Q 043164 445 GPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVA 524 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~ 524 (1049)
.++++|||+|||..+++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|.+|+..|||..| +|+.|+|.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V~ 109 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPL--DGRPMDIQ 109 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEES--SSCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEE--CCcEEEEE
Confidence 357899999999999999999999999999999999998 899999999999999999999999999988 79999999
Q ss_pred EeecCCC
Q 043164 525 YAKSILG 531 (1049)
Q Consensus 525 ~Ak~k~~ 531 (1049)
||.....
T Consensus 110 ~a~~~~~ 116 (124)
T 2kt5_A 110 LVASQID 116 (124)
T ss_dssp EECCTTC
T ss_pred EeCCCCC
Confidence 9987643
No 201
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=4.3e-14 Score=132.09 Aligned_cols=78 Identities=18% Similarity=0.281 Sum_probs=70.5
Q ss_pred CCCCceEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEE
Q 043164 283 VAPSGTIVVKGLSQ-KTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLF 361 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~-~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~ 361 (1049)
..|+++|||+|||. .+|+++|+++|++||.|.+|.|+++ +|||||+|.+.++|..||+.|+.++..|.|++|.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 35788999999999 9999999999999999999999876 4799999999999999999983345679999999
Q ss_pred EeecC
Q 043164 362 FEYSS 366 (1049)
Q Consensus 362 V~~A~ 366 (1049)
|.||.
T Consensus 86 V~~a~ 90 (102)
T 1x4d_A 86 VHLSQ 90 (102)
T ss_dssp EEEEC
T ss_pred EEECC
Confidence 99985
No 202
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=1.2e-13 Score=125.76 Aligned_cols=76 Identities=14% Similarity=0.341 Sum_probs=70.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEE
Q 043164 283 VAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFF 362 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V 362 (1049)
..+.++|||+|||..+|+++|+++|+.||.|..|.|+ +|||||+|.+.++|.+||+.| ++..|+|+.|.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~v 74 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNL--HHYKLHGVNINV 74 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHH--TTCBCSSCBCEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHh--cCCccCCcEEEE
Confidence 4577899999999999999999999999999999997 579999999999999999999 999999999999
Q ss_pred eecCCC
Q 043164 363 EYSSKP 368 (1049)
Q Consensus 363 ~~A~~p 368 (1049)
.++..+
T Consensus 75 ~~a~~~ 80 (90)
T 2dnq_A 75 EASKNK 80 (90)
T ss_dssp ECSSCC
T ss_pred EECCCC
Confidence 998543
No 203
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.49 E-value=2.5e-14 Score=140.78 Aligned_cols=82 Identities=29% Similarity=0.522 Sum_probs=78.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEe
Q 043164 284 APSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFE 363 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~ 363 (1049)
.+.++|||+|||..+|+++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||+.| ++..|.|+.|.|.
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l--~g~~i~g~~l~V~ 122 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM--DGAVLDGRELRVQ 122 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTT--TTCCSSSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHc--CCCEECCEEEEEE
Confidence 45689999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred ecCC
Q 043164 364 YSSK 367 (1049)
Q Consensus 364 ~A~~ 367 (1049)
++..
T Consensus 123 ~a~~ 126 (135)
T 2lea_A 123 MARY 126 (135)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 9843
No 204
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=8.5e-15 Score=131.66 Aligned_cols=80 Identities=23% Similarity=0.300 Sum_probs=75.3
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~ 525 (1049)
++++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|||..| +|+.|+|.+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~~~~~~ 81 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGV--QAQMAKQSG 81 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTC--CEESCCSSC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeE--eeEEEeecC
Confidence 568999999999999999999999999999999999998999999999999999999999999999988 699888877
Q ss_pred ee
Q 043164 526 AK 527 (1049)
Q Consensus 526 Ak 527 (1049)
+.
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 205
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.49 E-value=6.5e-14 Score=136.30 Aligned_cols=81 Identities=21% Similarity=0.381 Sum_probs=73.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCC
Q 043164 282 AVAPSGTIVVKGLSQKTTEEDLY----QILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDG 357 (1049)
Q Consensus 282 ~~~ps~~L~V~nLp~~~tee~L~----~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~G 357 (1049)
...|+++|||+|||+.+++++|+ ++|++||.|.+|.|.. ++.++|||||+|.+.++|..||..| ||..|.|
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~l--ng~~l~g 99 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAF--QGYPFQG 99 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHS--TTCCCTT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHH--CCCEeCC
Confidence 34678899999999999999876 6999999999988753 6889999999999999999999999 9999999
Q ss_pred eeEEEeecCC
Q 043164 358 RKLFFEYSSK 367 (1049)
Q Consensus 358 r~i~V~~A~~ 367 (1049)
++|.|.||..
T Consensus 100 r~l~V~~a~~ 109 (127)
T 2a3j_A 100 NPLVITFSET 109 (127)
T ss_dssp SCCEEEECCC
T ss_pred CEEEEEEccC
Confidence 9999999843
No 206
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=3.5e-14 Score=135.33 Aligned_cols=80 Identities=19% Similarity=0.226 Sum_probs=74.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCe-eEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEE
Q 043164 283 VAPSGTIVVKGLSQKTTEEDLYQILAEWGPL-RHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLF 361 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i-~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~ 361 (1049)
..+.++|||+|||+.+|+++|+++|+.||.| ..|.|+.++ +|.++|||||+|.+.++|.+||+. ++..|+|+.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~---~~~~~~gr~i~ 87 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL---HRKKLNGREAF 87 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG---CSEEETTEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh---CCCccCCeEEE
Confidence 3456899999999999999999999999999 899999998 999999999999999999999954 99999999999
Q ss_pred EeecC
Q 043164 362 FEYSS 366 (1049)
Q Consensus 362 V~~A~ 366 (1049)
|.++.
T Consensus 88 v~~a~ 92 (114)
T 2cpy_A 88 VHVVT 92 (114)
T ss_dssp EEEEC
T ss_pred EEECC
Confidence 99973
No 207
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.49 E-value=2.4e-14 Score=127.75 Aligned_cols=74 Identities=19% Similarity=0.379 Sum_probs=68.8
Q ss_pred CceEEEcCCCCCC------CHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCe-
Q 043164 286 SGTIVVKGLSQKT------TEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGR- 358 (1049)
Q Consensus 286 s~~L~V~nLp~~~------tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr- 358 (1049)
+++|||+|||..+ |+++|+++|++||+|..|.|+ +.+|.++|||||+|.+.++|..||+.| ||..|+|+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~l--ng~~~~g~~ 76 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNA--DGYKLDKQH 76 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTS--SSCCCSSSS
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHh--cCcccCCce
Confidence 3689999999999 789999999999999999988 368999999999999999999999999 99999999
Q ss_pred eEEEe
Q 043164 359 KLFFE 363 (1049)
Q Consensus 359 ~i~V~ 363 (1049)
+|.|.
T Consensus 77 ~l~V~ 81 (81)
T 2krb_A 77 TFRVN 81 (81)
T ss_dssp CCCCC
T ss_pred eEEeC
Confidence 88773
No 208
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.49 E-value=2.2e-14 Score=125.68 Aligned_cols=75 Identities=24% Similarity=0.381 Sum_probs=71.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEeec
Q 043164 288 TIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYS 365 (1049)
Q Consensus 288 ~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~A 365 (1049)
+|||+|||..+|+++|+++|+.||+|..|.|+.++.+|.++|||||+|.+.++|.+||+ + ++..|+|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~--~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-K--KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-T--SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-h--CCCeECCEEEEEEEC
Confidence 69999999999999999999999999999999999999999999999999999999997 4 789999999999874
No 209
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=2.8e-14 Score=133.75 Aligned_cols=79 Identities=18% Similarity=0.310 Sum_probs=74.3
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~ 525 (1049)
+..+|||+|||..+|+++|+++|++||.|..|.|++++. +.++|||||+|.+.++|.+||. ++|..| +|+.|.|.+
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~--~gr~l~V~~ 85 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKY--KETDLLILF 85 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCC--TTTTCEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEE--CCEEEEEEE
Confidence 467999999999999999999999999999999999986 9999999999999999999999 899888 799999999
Q ss_pred eec
Q 043164 526 AKS 528 (1049)
Q Consensus 526 Ak~ 528 (1049)
+..
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 654
No 210
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=7.4e-14 Score=132.05 Aligned_cols=81 Identities=23% Similarity=0.458 Sum_probs=75.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEE
Q 043164 282 AVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLF 361 (1049)
Q Consensus 282 ~~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~ 361 (1049)
...+.++|||+|||..+|+++|+++|+.||.|..|.|+.++ +.++|||||+|.+.++|.+|++.| +|..|+|+.|.
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l~ 100 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKL--HGTVVEGRKIE 100 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHH--TTCEETTEECE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHc--CCCEECCEEEE
Confidence 34567899999999999999999999999999999999984 458999999999999999999999 99999999999
Q ss_pred EeecC
Q 043164 362 FEYSS 366 (1049)
Q Consensus 362 V~~A~ 366 (1049)
|.++.
T Consensus 101 V~~a~ 105 (109)
T 2err_A 101 VNNAT 105 (109)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 99973
No 211
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=1e-13 Score=129.04 Aligned_cols=81 Identities=35% Similarity=0.589 Sum_probs=74.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEE
Q 043164 283 VAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFF 362 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V 362 (1049)
..+.++|||+|||..+|+++|+++|+.| ..|.++.++.++.++|||||+|.+.++|.+||+.| |+..|.|+.|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~V 86 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM--EDGEIDGNKVTL 86 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHH--TTCEETTEECEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHh--CCCeECCeEEEE
Confidence 3567899999999999999999999977 47888899889999999999999999999999999 999999999999
Q ss_pred eecCCC
Q 043164 363 EYSSKP 368 (1049)
Q Consensus 363 ~~A~~p 368 (1049)
.++...
T Consensus 87 ~~a~~~ 92 (102)
T 2fc8_A 87 DWAKPK 92 (102)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 998543
No 212
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.49 E-value=4e-14 Score=135.95 Aligned_cols=78 Identities=21% Similarity=0.248 Sum_probs=74.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCC---eeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeE
Q 043164 284 APSGTIVVKGLSQKTTEEDLYQILAEWGP---LRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKL 360 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~~~F~~~G~---i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i 360 (1049)
...++|||+|||+.+|+++|+++|+.||. |..|.|+.++. |+++|||||+|.+.++|.+||+ | ++..|+|+.|
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~--~g~~~~gr~i 90 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-K--DRESMGHRYI 90 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-G--TTEEETTEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-c--CCCeECCeEE
Confidence 45689999999999999999999999999 89999999976 9999999999999999999998 8 9999999999
Q ss_pred EEeec
Q 043164 361 FFEYS 365 (1049)
Q Consensus 361 ~V~~A 365 (1049)
.|.++
T Consensus 91 ~V~~a 95 (118)
T 2db1_A 91 EVFKS 95 (118)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99997
No 213
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=3.9e-14 Score=135.94 Aligned_cols=81 Identities=16% Similarity=0.178 Sum_probs=72.0
Q ss_pred CCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEE
Q 043164 445 GPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVA 524 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~ 524 (1049)
.|+++|||+|||+.+++++|+++|++||.|..|.|+++ +|||||+|.+.++|.+|++.|++..+.++|+.|+|.
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 36789999999999999999999999999999999975 689999999999999999999864333389999999
Q ss_pred EeecCCC
Q 043164 525 YAKSILG 531 (1049)
Q Consensus 525 ~Ak~k~~ 531 (1049)
||+++..
T Consensus 103 ~a~~k~~ 109 (119)
T 2ad9_A 103 FSNHKEL 109 (119)
T ss_dssp ECSSSSC
T ss_pred EccCCCC
Confidence 9987643
No 214
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=2.7e-14 Score=135.90 Aligned_cols=85 Identities=26% Similarity=0.416 Sum_probs=74.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEE
Q 043164 282 AVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLF 361 (1049)
Q Consensus 282 ~~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~ 361 (1049)
...++++|||+|||..+|+++|+++|+.||.|..|.+..+..+|.++|||||+|.+.++|..||+.| ++..|+|+.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l--~g~~~~g~~l~ 98 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLV--NGYKLYGKILV 98 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHS--TTCBCSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHh--CCCEeCCcEEE
Confidence 3457789999999999999999999999999854443333348899999999999999999999999 99999999999
Q ss_pred EeecCCC
Q 043164 362 FEYSSKP 368 (1049)
Q Consensus 362 V~~A~~p 368 (1049)
|.|+...
T Consensus 99 v~~a~~~ 105 (115)
T 2cpx_A 99 IEFGKNK 105 (115)
T ss_dssp EEECCCC
T ss_pred EEEccCC
Confidence 9998543
No 215
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=6.5e-14 Score=130.99 Aligned_cols=84 Identities=20% Similarity=0.220 Sum_probs=75.3
Q ss_pred CCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEE
Q 043164 445 GPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVA 524 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~ 524 (1049)
.+..+|||+|||..+++++|+++|++||. +.|.|+.++ ++.++|||||+|.+.++|.+||+ +|+..| +|+.|.|.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~--~gr~i~V~ 87 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANM--QHRYVELF 87 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCS--SSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeE--CCcEEEEE
Confidence 34679999999999999999999999995 599999998 89999999999999999999995 799887 79999999
Q ss_pred EeecCCCCC
Q 043164 525 YAKSILGPG 533 (1049)
Q Consensus 525 ~Ak~k~~~~ 533 (1049)
++.......
T Consensus 88 ~~~~~~~~~ 96 (102)
T 1wez_A 88 LNSTAGTSG 96 (102)
T ss_dssp EECCCCCCC
T ss_pred ECCCCCCCC
Confidence 988765443
No 216
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=5.1e-14 Score=132.68 Aligned_cols=85 Identities=21% Similarity=0.268 Sum_probs=78.1
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCC-eeeEEEe-ecCCCCceeeEEEEEeCCHHHHHHHHHHhC--CCeeccCCeEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAP-IKDLRLV-RDKFTHVSRGFAFLHFHSVEDASKALEATN--GTTLEKNGQIL 521 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~-I~~v~I~-rD~~tg~SrGfAFVeF~s~e~A~kAl~~Ln--G~~~~i~Gr~L 521 (1049)
+.++|||+|||..+++++|+++|++||. |..|.|+ .++.++.++|||||+|.+.++|.+|+..|+ +..| +|+.|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~--~g~~l 84 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQL--WGHQI 84 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCB--TTBCC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCcee--cCCeE
Confidence 5689999999999999999999999998 9999999 888889999999999999999999999996 4777 79999
Q ss_pred EEEEeecCCCC
Q 043164 522 RVAYAKSILGP 532 (1049)
Q Consensus 522 ~V~~Ak~k~~~ 532 (1049)
+|.||+++..+
T Consensus 85 ~V~~a~~~~~~ 95 (109)
T 2dis_A 85 AVDWAEPEIDV 95 (109)
T ss_dssp EEEESCSSCST
T ss_pred EEEEcCCCCCc
Confidence 99999887543
No 217
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.48 E-value=2.7e-14 Score=125.22 Aligned_cols=75 Identities=27% Similarity=0.363 Sum_probs=71.7
Q ss_pred eEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEEe
Q 043164 449 VLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYA 526 (1049)
Q Consensus 449 ~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~A 526 (1049)
+|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|++ |||..| +|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~--~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEI--NNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCS--SSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEE--CCEEEEEEeC
Confidence 48999999999999999999999999999999999899999999999999999999998 999988 7999999885
No 218
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.48 E-value=9.3e-14 Score=134.11 Aligned_cols=82 Identities=21% Similarity=0.387 Sum_probs=77.5
Q ss_pred cceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEEe
Q 043164 447 THVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYA 526 (1049)
Q Consensus 447 s~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~A 526 (1049)
..+|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|| .|||..| +|+.|+|.|+
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~--~g~~l~V~~a 112 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVF--RGRTIKVLPK 112 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEE--TTEECEEEES
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeE--CCeEEEEEEC
Confidence 579999999999999999999999999999999999889999999999999999999999 7999999 7999999999
Q ss_pred ecCCC
Q 043164 527 KSILG 531 (1049)
Q Consensus 527 k~k~~ 531 (1049)
++...
T Consensus 113 ~~~~~ 117 (124)
T 2jwn_A 113 RTNMP 117 (124)
T ss_dssp SCCCS
T ss_pred CCCCC
Confidence 87543
No 219
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=2.9e-13 Score=123.57 Aligned_cols=79 Identities=25% Similarity=0.455 Sum_probs=72.6
Q ss_pred CCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEE
Q 043164 445 GPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVA 524 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~ 524 (1049)
.++++|||+|||..+++++|+++|++||.|..|.|+++ ||||+|.+.++|.+|+..|||..| +|+.|+|.
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V~ 77 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEF--QGKRMHVQ 77 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTTEEE--TTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCee--CCcEEEEE
Confidence 35789999999999999999999999999999999853 999999999999999999999999 79999999
Q ss_pred EeecCCCCC
Q 043164 525 YAKSILGPG 533 (1049)
Q Consensus 525 ~Ak~k~~~~ 533 (1049)
|++++....
T Consensus 78 ~a~~~~~~~ 86 (92)
T 2dgt_A 78 LSTSRLRTA 86 (92)
T ss_dssp ESSCCCSCC
T ss_pred EccCCCCCC
Confidence 998875543
No 220
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.47 E-value=1.7e-14 Score=134.10 Aligned_cols=80 Identities=18% Similarity=0.316 Sum_probs=74.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEe
Q 043164 284 APSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFE 363 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~ 363 (1049)
.+..+|||+|||..+|+++|+++|+.||.|.. .++.++.+|.++|||||+|.+.++|.+||+ | |+..|.|+.|.|.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l--~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-L--TGLKVFGNEIKLE 90 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-G--GGCCBTTBCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-c--CCcEECCcEEEEE
Confidence 46789999999999999999999999999987 777887899999999999999999999998 9 9999999999999
Q ss_pred ecCC
Q 043164 364 YSSK 367 (1049)
Q Consensus 364 ~A~~ 367 (1049)
++..
T Consensus 91 ~a~~ 94 (101)
T 1fj7_A 91 KPKG 94 (101)
T ss_dssp CCSC
T ss_pred EcCC
Confidence 9843
No 221
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.47 E-value=9.8e-14 Score=131.27 Aligned_cols=82 Identities=24% Similarity=0.348 Sum_probs=75.1
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~ 525 (1049)
+.++|||+|||..+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||..+ |..| +|+.|.|.+
T Consensus 24 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l--~g~~l~V~~ 100 (109)
T 2rs2_A 24 SGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHEL--DSKTIDPKV 100 (109)
T ss_dssp --CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEE--TTEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcC--CCEEEEEEE
Confidence 4679999999999999999999999999999999999999999999999999999999999986 4666 899999999
Q ss_pred eecCC
Q 043164 526 AKSIL 530 (1049)
Q Consensus 526 Ak~k~ 530 (1049)
+.++.
T Consensus 101 a~~~~ 105 (109)
T 2rs2_A 101 AFPRR 105 (109)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 98764
No 222
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=1.6e-13 Score=126.58 Aligned_cols=79 Identities=30% Similarity=0.454 Sum_probs=72.9
Q ss_pred CCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccC--CeEEE
Q 043164 445 GPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKN--GQILR 522 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~--Gr~L~ 522 (1049)
.++++|||+|||..+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+|++.|||..| + |+.|+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~--~~~g~~l~ 86 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPL--GGPDRRLR 86 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBC--SSSSCBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEe--CCCCcEEE
Confidence 46789999999999999999999999999999999864 68999999999999999999999988 6 99999
Q ss_pred EEEeecCCC
Q 043164 523 VAYAKSILG 531 (1049)
Q Consensus 523 V~~Ak~k~~ 531 (1049)
|.||+++..
T Consensus 87 V~~a~~~~~ 95 (97)
T 1why_A 87 VDFAKSGPS 95 (97)
T ss_dssp EEECCCCCC
T ss_pred EEECCCCCC
Confidence 999988743
No 223
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=5e-14 Score=133.71 Aligned_cols=79 Identities=19% Similarity=0.319 Sum_probs=71.3
Q ss_pred CCCCceEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEE
Q 043164 283 VAPSGTIVVKGLSQK-TTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLF 361 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~~-~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~ 361 (1049)
..|+++|||+|||.. +|+++|+++|++||.|.+|.|++ ++|||||+|.+.++|..||+.|+.++..|.|++|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 467899999999998 99999999999999999999975 37899999999999999999884456789999999
Q ss_pred EeecCC
Q 043164 362 FEYSSK 367 (1049)
Q Consensus 362 V~~A~~ 367 (1049)
|.||..
T Consensus 96 V~~a~~ 101 (112)
T 1x4f_A 96 VDLSEK 101 (112)
T ss_dssp EEEECS
T ss_pred EEECcc
Confidence 999853
No 224
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.47 E-value=5.7e-14 Score=138.31 Aligned_cols=78 Identities=21% Similarity=0.231 Sum_probs=74.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCC---eeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeE
Q 043164 284 APSGTIVVKGLSQKTTEEDLYQILAEWGP---LRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKL 360 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~~~F~~~G~---i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i 360 (1049)
....+|||+|||+.+|+++|+++|+.||. |..|.|+.++. |+++|||||+|.+.++|.+||+ | |+..|+|+.|
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~--~g~~l~gr~i 117 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-K--DRESMGHRYI 117 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-T--TEEESSSSEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-c--CCCEECCEEE
Confidence 45689999999999999999999999999 89999999986 9999999999999999999998 8 9999999999
Q ss_pred EEeec
Q 043164 361 FFEYS 365 (1049)
Q Consensus 361 ~V~~A 365 (1049)
.|.++
T Consensus 118 ~V~~a 122 (136)
T 2hgl_A 118 EVFKS 122 (136)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 99986
No 225
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.2e-13 Score=130.53 Aligned_cols=80 Identities=26% Similarity=0.398 Sum_probs=75.2
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~ 525 (1049)
+.++|||+|||..+++++|+++|++||.|..|.|+.++ +.++|||||+|.+.++|.+|+..|||..| +|+.|+|.|
T Consensus 28 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V~~ 103 (109)
T 2err_A 28 QPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVV--EGRKIEVNN 103 (109)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEE--TTEECEEEE
T ss_pred CCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEE--CCEEEEEEE
Confidence 56899999999999999999999999999999999985 35899999999999999999999999999 799999999
Q ss_pred eecC
Q 043164 526 AKSI 529 (1049)
Q Consensus 526 Ak~k 529 (1049)
|+++
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 9875
No 226
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.47 E-value=1e-13 Score=131.61 Aligned_cols=78 Identities=19% Similarity=0.230 Sum_probs=71.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEE
Q 043164 284 APSGTIVVKGLSQKTTEEDLYQILAEWG-PLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFF 362 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~~~F~~~G-~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V 362 (1049)
....+|||+|||+.+|+++|+++|+.|| .|..|.|+.+ .++|||||+|.+.++|.+||+.| ||..|+|+.|.|
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~l--ng~~l~Gr~i~V 99 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERL--NNIEFRGSVITV 99 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHT--TTEEETTEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHc--CCCEECCeEEEE
Confidence 4567999999999999999999999999 8999998643 47899999999999999999999 999999999999
Q ss_pred eecCC
Q 043164 363 EYSSK 367 (1049)
Q Consensus 363 ~~A~~ 367 (1049)
.++..
T Consensus 100 ~~a~~ 104 (111)
T 2jvr_A 100 ERDDN 104 (111)
T ss_dssp EESCC
T ss_pred EECCC
Confidence 99754
No 227
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=8.5e-14 Score=132.68 Aligned_cols=81 Identities=14% Similarity=0.078 Sum_probs=75.8
Q ss_pred CCcceEEEeCCCccCcHHHHHHHhhccCCe-eeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEE
Q 043164 445 GPTHVLVVRGLDEYADEEMLRYEFSKHAPI-KDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRV 523 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLre~Fs~fG~I-~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V 523 (1049)
.+..+|||+|||..+++++|+++|+.||.| ..|.|+.++ ++.++|||||+|.+.++|.+||.. ||..| +|+.|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~--~gr~i~v 88 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKL--NGREAFV 88 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEE--TTEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCcc--CCeEEEE
Confidence 356899999999999999999999999999 899999998 999999999999999999999987 99888 7999999
Q ss_pred EEeecC
Q 043164 524 AYAKSI 529 (1049)
Q Consensus 524 ~~Ak~k 529 (1049)
.+|.++
T Consensus 89 ~~a~~~ 94 (114)
T 2cpy_A 89 HVVTLE 94 (114)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 998764
No 228
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=1.5e-13 Score=126.74 Aligned_cols=77 Identities=25% Similarity=0.501 Sum_probs=71.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeC--CeeE
Q 043164 283 VAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVD--GRKL 360 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~--Gr~i 360 (1049)
..++++|||+|||..+|+++|+++|+.||.|..|.|+.+ +|||||+|.+.++|.+||+.| |+..|. |+.|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l--~g~~~~~~g~~l 85 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKM--RGFPLGGPDRRL 85 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHH--TTCBCSSSSCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHH--CCCEeCCCCcEE
Confidence 356789999999999999999999999999999999764 679999999999999999999 999999 9999
Q ss_pred EEeecCC
Q 043164 361 FFEYSSK 367 (1049)
Q Consensus 361 ~V~~A~~ 367 (1049)
.|.|+..
T Consensus 86 ~V~~a~~ 92 (97)
T 1why_A 86 RVDFAKS 92 (97)
T ss_dssp EEEECCC
T ss_pred EEEECCC
Confidence 9999843
No 229
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1e-13 Score=129.85 Aligned_cols=79 Identities=22% Similarity=0.281 Sum_probs=73.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeE-EEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEE
Q 043164 284 APSGTIVVKGLSQKTTEEDLYQILAEWGPLRH-VRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFF 362 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~-v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V 362 (1049)
.+..+|||+|||+.+|+++|+++|..||.|.. |.|+.+ .+|.++|||||+|.+.++|.+||.. ++..|+|+.|.|
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~---~~~~~~gr~i~v 88 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK---HKERIGHRYIEI 88 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT---TTCCSSSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh---CcchhCCcEEEE
Confidence 45689999999999999999999999999987 999998 7999999999999999999999964 899999999999
Q ss_pred eecC
Q 043164 363 EYSS 366 (1049)
Q Consensus 363 ~~A~ 366 (1049)
.++.
T Consensus 89 ~~~~ 92 (104)
T 1wg5_A 89 FKSS 92 (104)
T ss_dssp EEEC
T ss_pred EECC
Confidence 9874
No 230
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.47 E-value=7.2e-14 Score=128.69 Aligned_cols=80 Identities=24% Similarity=0.441 Sum_probs=74.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCe
Q 043164 283 VAPSGTIVVKGLSQKTTEEDLY----QILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGR 358 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~~~tee~L~----~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr 358 (1049)
..++++|||+|||..+|+++|+ ++|+.||.|..|.|+. +|.++|||||+|.+.++|..|++.| +|..|+|+
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~ 79 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSM--QGFPFYDK 79 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHH--TTCEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHh--CCCEECCc
Confidence 4678999999999999999999 9999999999999874 5788999999999999999999999 99999999
Q ss_pred eEEEeecCC
Q 043164 359 KLFFEYSSK 367 (1049)
Q Consensus 359 ~i~V~~A~~ 367 (1049)
.|.|.|+..
T Consensus 80 ~l~v~~a~~ 88 (97)
T 1nu4_A 80 PMRIQYAKT 88 (97)
T ss_dssp ECEEEECSS
T ss_pred EEEEEEccC
Confidence 999999843
No 231
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.47 E-value=8.9e-14 Score=135.32 Aligned_cols=80 Identities=21% Similarity=0.343 Sum_probs=72.9
Q ss_pred CCcceEEEeCCCccCcHHHHH----HHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeE
Q 043164 445 GPTHVLVVRGLDEYADEEMLR----YEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQI 520 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLr----e~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~ 520 (1049)
.|+++|||+||++.+++++|+ ++|++||.|..|.|.+ ++.++|||||+|.+.++|..|+..|||..| .|+.
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l--~gr~ 101 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPF--QGNP 101 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCC--TTSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEe--CCCE
Confidence 467899999999999999865 6999999999998864 578999999999999999999999999998 6999
Q ss_pred EEEEEeecC
Q 043164 521 LRVAYAKSI 529 (1049)
Q Consensus 521 L~V~~Ak~k 529 (1049)
|+|.||+.+
T Consensus 102 l~V~~a~~~ 110 (127)
T 2a3j_A 102 LVITFSETP 110 (127)
T ss_dssp CEEEECCCC
T ss_pred EEEEEccCc
Confidence 999999875
No 232
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=2.3e-13 Score=128.32 Aligned_cols=75 Identities=16% Similarity=0.239 Sum_probs=70.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCC-----e
Q 043164 284 APSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDG-----R 358 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~G-----r 358 (1049)
...++|||+|||..+|+++|+++|..||.|..|.|+.+ |||||+|.+.++|.+||+.| |+..|.| +
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l--~g~~~~g~~~~~~ 83 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKL--DNTKFRSHEGETA 83 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHS--SSEEEECTTSCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHH--CcCCccCCcCcce
Confidence 45689999999999999999999999999999999886 79999999999999999999 9999999 9
Q ss_pred eEEEeecCC
Q 043164 359 KLFFEYSSK 367 (1049)
Q Consensus 359 ~i~V~~A~~ 367 (1049)
.|.|.++..
T Consensus 84 ~i~V~~a~~ 92 (108)
T 1x4c_A 84 YIRVKVDGP 92 (108)
T ss_dssp EEEEEESSC
T ss_pred EEEEEeCCC
Confidence 999999854
No 233
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.47 E-value=5.5e-14 Score=150.76 Aligned_cols=80 Identities=21% Similarity=0.362 Sum_probs=75.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcC--CeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEE
Q 043164 285 PSGTIVVKGLSQKTTEEDLYQILAEWG--PLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFF 362 (1049)
Q Consensus 285 ps~~L~V~nLp~~~tee~L~~~F~~~G--~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V 362 (1049)
..++|||+|||+.+|+++|+++|+.|| .|..|.|+.|+.+|.++|||||+|.+.++|.+||+.| |+..|+|+.|.|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~l--ng~~~~Gr~l~V 144 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLL--PKRELHGQNPVV 144 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTS--TTSCBTTBCCEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHc--CCCeECCEEeEE
Confidence 457899999999999999999999999 9999999999999999999999999999999999999 999999999999
Q ss_pred eecC
Q 043164 363 EYSS 366 (1049)
Q Consensus 363 ~~A~ 366 (1049)
.++.
T Consensus 145 ~~a~ 148 (229)
T 3q2s_C 145 TPVN 148 (229)
T ss_dssp EECC
T ss_pred EECC
Confidence 9973
No 234
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.8e-13 Score=124.50 Aligned_cols=78 Identities=18% Similarity=0.280 Sum_probs=72.2
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~ 525 (1049)
+.++|||+|||..+++++|+++|++||.|..|.|+ +|||||+|.+.++|.+|+..|||..| +|+.|+|.|
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v~~ 76 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKL--HGVNINVEA 76 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBC--SSCBCEEEC
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCcc--CCcEEEEEE
Confidence 57899999999999999999999999999999997 47999999999999999999999988 799999999
Q ss_pred eecCCCCC
Q 043164 526 AKSILGPG 533 (1049)
Q Consensus 526 Ak~k~~~~ 533 (1049)
++++....
T Consensus 77 a~~~~~~~ 84 (90)
T 2dnq_A 77 SKNKSKAS 84 (90)
T ss_dssp SSCCCCCC
T ss_pred CCCCCCCC
Confidence 98875543
No 235
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.46 E-value=1.9e-14 Score=130.83 Aligned_cols=81 Identities=23% Similarity=0.357 Sum_probs=73.7
Q ss_pred ceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEEee
Q 043164 448 HVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYAK 527 (1049)
Q Consensus 448 ~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~Ak 527 (1049)
++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.+ |.+|+..|||..| +|+.|+|.+|.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~--~g~~l~V~~a~ 78 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDF--MGRTIRVTEAN 78 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCC--SSSSCSEEEC-
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEE--CCeEEEEEEcC
Confidence 47999999999999999999999999999999999999999999999999999 9999999999998 79999999998
Q ss_pred cCCC
Q 043164 528 SILG 531 (1049)
Q Consensus 528 ~k~~ 531 (1049)
+...
T Consensus 79 ~~~~ 82 (90)
T 2ki2_A 79 PKKS 82 (90)
T ss_dssp ----
T ss_pred CCCC
Confidence 7643
No 236
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.46 E-value=1.2e-13 Score=129.57 Aligned_cols=80 Identities=23% Similarity=0.319 Sum_probs=73.9
Q ss_pred CcceEEEeCCCccC------cHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCe
Q 043164 446 PTHVLVVRGLDEYA------DEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQ 519 (1049)
Q Consensus 446 ps~~LfV~NLp~~~------teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr 519 (1049)
.+++|||+|||..+ ++++|+++|++||.|..|.|++ .+|.++|||||+|.+.++|.+||..|||..| +|+
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~--~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~--~g~ 89 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKL--DKQ 89 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC--BTTBSCCEEEEEECSSSHHHHHHHHCSSEEC--STT
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC--CCCCeeeEEEEEECCHHHHHHHHHHhCCccc--CCC
Confidence 46799999999999 8899999999999999999983 5889999999999999999999999999998 798
Q ss_pred -EEEEEEeecC
Q 043164 520 -ILRVAYAKSI 529 (1049)
Q Consensus 520 -~L~V~~Ak~k 529 (1049)
.|+|.+|...
T Consensus 90 ~~l~V~~a~~~ 100 (105)
T 2nlw_A 90 HTFRVNLFTDF 100 (105)
T ss_dssp CEEEEECSCCC
T ss_pred ceEEEEEcchH
Confidence 9999998754
No 237
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=3.5e-13 Score=128.04 Aligned_cols=84 Identities=20% Similarity=0.290 Sum_probs=77.2
Q ss_pred CCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeecc------CC
Q 043164 445 GPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEK------NG 518 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i------~G 518 (1049)
.+.++|||+|||..+++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|.+||..|||..|.. .+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 356799999999999999999999999999999999998 89999999999999999999999999998831 47
Q ss_pred eEEEEEEeecC
Q 043164 519 QILRVAYAKSI 529 (1049)
Q Consensus 519 r~L~V~~Ak~k 529 (1049)
+.|.|.||+++
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 88999999865
No 238
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.46 E-value=3.7e-14 Score=131.87 Aligned_cols=80 Identities=24% Similarity=0.341 Sum_probs=74.7
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecC-CCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDK-FTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVA 524 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~-~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~ 524 (1049)
+.++|||+|||..+++++|+++|+.|| |..|.|+.++ .++.++|||||+|.+.++|.+|| .|||..| +|+.|+|.
T Consensus 18 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~--~g~~l~V~ 93 (100)
T 2j76_E 18 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESL--GNRRIRVD 93 (100)
T ss_dssp --CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCB--TTBCCCCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEE--CCeEEEEE
Confidence 468999999999999999999999999 9999999998 68999999999999999999999 8999998 79999999
Q ss_pred EeecC
Q 043164 525 YAKSI 529 (1049)
Q Consensus 525 ~Ak~k 529 (1049)
+|+++
T Consensus 94 ~a~~~ 98 (100)
T 2j76_E 94 VADQA 98 (100)
T ss_dssp ECCCS
T ss_pred eccCC
Confidence 99875
No 239
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.46 E-value=1.8e-13 Score=131.42 Aligned_cols=80 Identities=18% Similarity=0.213 Sum_probs=74.7
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCC---eeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAP---IKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILR 522 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~---I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~ 522 (1049)
...+|||+|||..+++++|+++|+.||. |..|.|+.++. +.++|||||+|.+.++|.+||+ |||..| +|+.|.
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~--~gr~i~ 91 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESM--GHRYIE 91 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEE--TTEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeE--CCeEEE
Confidence 4678999999999999999999999999 89999999986 9999999999999999999999 999888 799999
Q ss_pred EEEeecC
Q 043164 523 VAYAKSI 529 (1049)
Q Consensus 523 V~~Ak~k 529 (1049)
|.++..+
T Consensus 92 V~~a~~~ 98 (118)
T 2db1_A 92 VFKSHRT 98 (118)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9998653
No 240
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=4.8e-13 Score=126.15 Aligned_cols=77 Identities=19% Similarity=0.228 Sum_probs=72.1
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCC-----eE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNG-----QI 520 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~G-----r~ 520 (1049)
...+|||+|||..+++++|+++|++||.|..|.|+.+ |||||+|.+.++|.+||+.|||..| +| +.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~--~g~~~~~~~ 84 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKF--RSHEGETAY 84 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEE--ECTTSCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCc--cCCcCcceE
Confidence 4679999999999999999999999999999999976 8999999999999999999999999 58 99
Q ss_pred EEEEEeecCCC
Q 043164 521 LRVAYAKSILG 531 (1049)
Q Consensus 521 L~V~~Ak~k~~ 531 (1049)
|+|.+|+++..
T Consensus 85 i~V~~a~~~~~ 95 (108)
T 1x4c_A 85 IRVKVDGPRSP 95 (108)
T ss_dssp EEEEESSCCSC
T ss_pred EEEEeCCCCCC
Confidence 99999988754
No 241
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=3.5e-13 Score=127.20 Aligned_cols=78 Identities=18% Similarity=0.431 Sum_probs=72.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEE
Q 043164 282 AVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLF 361 (1049)
Q Consensus 282 ~~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~ 361 (1049)
...+.++|||+|||..+|+++|+++|+.||.|..|.|+.+ +|||||+|.+.++|..||..| +|..|+|+.|.
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~ 92 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSV--NGTTIEGHVVK 92 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHH--TTCEETTEECE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHc--CCCEECCcEEE
Confidence 3456789999999999999999999999999999999876 689999999999999999999 99999999999
Q ss_pred EeecCC
Q 043164 362 FEYSSK 367 (1049)
Q Consensus 362 V~~A~~ 367 (1049)
|.|+..
T Consensus 93 v~~a~~ 98 (109)
T 1x4g_A 93 CYWGKE 98 (109)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 999843
No 242
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=2.1e-13 Score=126.29 Aligned_cols=77 Identities=21% Similarity=0.431 Sum_probs=71.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEE
Q 043164 283 VAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFF 362 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V 362 (1049)
..+.++|||+|||..+|+++|+++|+.||+|..|.|+++ +|||||+|.+.++|.+||+.| ++..|.|+.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l--~g~~~~g~~l~v 83 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVEL--DNMPLRGKQLRV 83 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHH--TTCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHh--CCCEeCCceEEE
Confidence 356789999999999999999999999999999999864 689999999999999999999 999999999999
Q ss_pred eecCC
Q 043164 363 EYSSK 367 (1049)
Q Consensus 363 ~~A~~ 367 (1049)
.++..
T Consensus 84 ~~a~~ 88 (99)
T 2cpj_A 84 RFACH 88 (99)
T ss_dssp EESSC
T ss_pred EEcCC
Confidence 99854
No 243
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=5.2e-14 Score=123.82 Aligned_cols=75 Identities=27% Similarity=0.428 Sum_probs=71.8
Q ss_pred eEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEEe
Q 043164 449 VLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYA 526 (1049)
Q Consensus 449 ~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~A 526 (1049)
+|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+..++ ..| +|+.|.|.+|
T Consensus 2 ~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~--~g~~l~v~~a 76 (77)
T 1uaw_A 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HEL--DSKTIDPKVA 76 (77)
T ss_dssp CEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCC--SSCCCEEEEC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-Ccc--CCEEEEEEec
Confidence 79999999999999999999999999999999999899999999999999999999999999 666 7999999986
No 244
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=8.1e-14 Score=132.61 Aligned_cols=86 Identities=29% Similarity=0.339 Sum_probs=74.4
Q ss_pred CCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEE
Q 043164 445 GPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVA 524 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~ 524 (1049)
.++++|||+|||..+++++|+++|++||.|..|.+..+..++.++|||||+|.+.++|.+||..|||..| +|+.|+|.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~g~~l~v~ 100 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKL--YGKILVIE 100 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBC--SSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEe--CCcEEEEE
Confidence 3578999999999999999999999999995443333333788999999999999999999999999988 79999999
Q ss_pred EeecCCCC
Q 043164 525 YAKSILGP 532 (1049)
Q Consensus 525 ~Ak~k~~~ 532 (1049)
||+++...
T Consensus 101 ~a~~~~~~ 108 (115)
T 2cpx_A 101 FGKNKKQR 108 (115)
T ss_dssp ECCCCSCC
T ss_pred EccCCCCC
Confidence 99887543
No 245
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=2.2e-13 Score=128.96 Aligned_cols=75 Identities=15% Similarity=0.231 Sum_probs=70.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEeec
Q 043164 286 SGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYS 365 (1049)
Q Consensus 286 s~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~A 365 (1049)
..+|||+|||+.+|+++|+++|+.| .|..|.|+.++. |+++|||||+|.+.++|.+|| .| |+..|+|+.|.|..+
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~--~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KR--NRMLMIQRYVEVSPA 90 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HT--TTEEETTEEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hc--CCCeECCeEEEEEEC
Confidence 3689999999999999999999999 899999999975 999999999999999999999 67 999999999999886
No 246
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.45 E-value=5.1e-14 Score=132.69 Aligned_cols=79 Identities=19% Similarity=0.213 Sum_probs=74.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCC---eeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCee
Q 043164 283 VAPSGTIVVKGLSQKTTEEDLYQILAEWGP---LRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRK 359 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~~~tee~L~~~F~~~G~---i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~ 359 (1049)
.....+|||+|||+.+|+++|+++|+.||. |..|.|+.++. |.++|||||+|.+.++|.+||+ | ++..|+|+.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~--~~~~~~gr~ 83 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-K--HRMYMGQRY 83 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-T--TTCCSSSSC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-h--CcceeCCeE
Confidence 345689999999999999999999999998 89999999986 9999999999999999999998 8 999999999
Q ss_pred EEEeec
Q 043164 360 LFFEYS 365 (1049)
Q Consensus 360 i~V~~A 365 (1049)
|.|.++
T Consensus 84 i~V~~a 89 (107)
T 2lmi_A 84 VEVYEI 89 (107)
T ss_dssp CCCEEC
T ss_pred EEEEEC
Confidence 999997
No 247
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=6.8e-14 Score=135.37 Aligned_cols=81 Identities=16% Similarity=0.163 Sum_probs=75.1
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~ 525 (1049)
+..+|||+|||..+++++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|.+||. |||..| +|+.|.|.+
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~--~gr~i~V~~ 100 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYM--GNRFIQVHP 100 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCS--TTSCBEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeE--CCcEEEEEE
Confidence 45799999999999999999999999999997777777799999999999999999999999 999988 799999999
Q ss_pred eecC
Q 043164 526 AKSI 529 (1049)
Q Consensus 526 Ak~k 529 (1049)
|..+
T Consensus 101 a~~~ 104 (124)
T 1wel_A 101 ITKK 104 (124)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8764
No 248
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=5e-13 Score=121.54 Aligned_cols=75 Identities=24% Similarity=0.438 Sum_probs=70.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEE
Q 043164 283 VAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFF 362 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V 362 (1049)
..+.++|||+|||..+|+++|+++|+.||.|..|.|+++ ||||+|.+.++|.+||+.| |+..|+|+.|.|
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--------~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v 75 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQL--NGKEVKGKRINV 75 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--------CEEEEESCHHHHHHHHHHH--TTCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--------EEEEEECCHHHHHHHHHHh--CCCEECCcEEEE
Confidence 456789999999999999999999999999999999843 9999999999999999999 999999999999
Q ss_pred eecCC
Q 043164 363 EYSSK 367 (1049)
Q Consensus 363 ~~A~~ 367 (1049)
.++..
T Consensus 76 ~~a~~ 80 (90)
T 2dnp_A 76 ELSTK 80 (90)
T ss_dssp EESCC
T ss_pred EECCC
Confidence 99854
No 249
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.44 E-value=4.5e-14 Score=131.27 Aligned_cols=82 Identities=27% Similarity=0.327 Sum_probs=75.4
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~ 525 (1049)
+..+|||+|||..+++++|+++|++||.|.. .++.+..++.++|||||+|.+.++|.+||+ |||..| +|+.|+|.|
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~--~g~~l~V~~ 91 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKV--FGNEIKLEK 91 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCB--TTBCCEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEE--CCcEEEEEE
Confidence 5679999999999999999999999999988 777777788999999999999999999999 999998 799999999
Q ss_pred eecCCC
Q 043164 526 AKSILG 531 (1049)
Q Consensus 526 Ak~k~~ 531 (1049)
|+++..
T Consensus 92 a~~~~~ 97 (101)
T 1fj7_A 92 PKGRDG 97 (101)
T ss_dssp CSCCCC
T ss_pred cCCCCC
Confidence 987644
No 250
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=6.5e-13 Score=121.27 Aligned_cols=76 Identities=20% Similarity=0.417 Sum_probs=70.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEE
Q 043164 282 AVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLF 361 (1049)
Q Consensus 282 ~~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~ 361 (1049)
...+.++|||+|||..+|+++|+++|+.||.|..|.|+++ ||||+|.+.++|.+||+.| |+..|.|+.|.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~ 75 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGL--DNTEFQGKRMH 75 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--------EEEEEESCHHHHHHHHHHH--TTEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--------EEEEEECCHHHHHHHHHHh--CCCeeCCcEEE
Confidence 3456789999999999999999999999999999999743 9999999999999999999 99999999999
Q ss_pred EeecCC
Q 043164 362 FEYSSK 367 (1049)
Q Consensus 362 V~~A~~ 367 (1049)
|.++..
T Consensus 76 V~~a~~ 81 (92)
T 2dgt_A 76 VQLSTS 81 (92)
T ss_dssp EEESSC
T ss_pred EEEccC
Confidence 999854
No 251
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=4.7e-13 Score=121.66 Aligned_cols=77 Identities=21% Similarity=0.352 Sum_probs=71.3
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~ 525 (1049)
+..+|||+|||..+++++|+++|++||.|..|.|++ +||||+|.+.++|.+|+..|||..| +|+.|+|.|
T Consensus 8 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~~ 77 (90)
T 2dnp_A 8 NTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEV--KGKRINVEL 77 (90)
T ss_dssp CSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEE--TTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEE--CCcEEEEEE
Confidence 567999999999999999999999999999999985 3999999999999999999999999 799999999
Q ss_pred eecCCCC
Q 043164 526 AKSILGP 532 (1049)
Q Consensus 526 Ak~k~~~ 532 (1049)
+++....
T Consensus 78 a~~~~~~ 84 (90)
T 2dnp_A 78 STKGQKK 84 (90)
T ss_dssp SCCCCCC
T ss_pred CCCCCCC
Confidence 9887443
No 252
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.44 E-value=1.4e-13 Score=126.71 Aligned_cols=80 Identities=30% Similarity=0.496 Sum_probs=74.4
Q ss_pred CCcceEEEeCCCccCcHHHHH----HHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeE
Q 043164 445 GPTHVLVVRGLDEYADEEMLR----YEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQI 520 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLr----e~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~ 520 (1049)
.++++|||+|||..+++++|+ ++|++||.|..|.|++ ++.++|||||+|.+.++|.+|+..|||..| +|+.
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~ 80 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPF--YDKP 80 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEE--TTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEE--CCcE
Confidence 367899999999999999999 9999999999999884 567889999999999999999999999999 7999
Q ss_pred EEEEEeecC
Q 043164 521 LRVAYAKSI 529 (1049)
Q Consensus 521 L~V~~Ak~k 529 (1049)
|+|.||+++
T Consensus 81 l~v~~a~~~ 89 (97)
T 1nu4_A 81 MRIQYAKTD 89 (97)
T ss_dssp CEEEECSSC
T ss_pred EEEEEccCC
Confidence 999999875
No 253
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.44 E-value=2.6e-13 Score=126.08 Aligned_cols=75 Identities=17% Similarity=0.306 Sum_probs=70.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEE
Q 043164 283 VAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFF 362 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V 362 (1049)
...+++|||+|||..+|+++|+++|+.||.|..|.|+. ++|||||+|.+.++|..||..| ||..|+|+.|.|
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l~V 95 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVAL--ANFPFQGRNLRT 95 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHH--TTCEETTEECCC
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHh--CCCeECCeEEEE
Confidence 34578999999999999999999999999999999983 5789999999999999999999 999999999999
Q ss_pred eec
Q 043164 363 EYS 365 (1049)
Q Consensus 363 ~~A 365 (1049)
.|+
T Consensus 96 ~~a 98 (101)
T 2la4_A 96 GWG 98 (101)
T ss_dssp CBC
T ss_pred Eec
Confidence 997
No 254
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.44 E-value=3.2e-13 Score=127.57 Aligned_cols=77 Identities=22% Similarity=0.489 Sum_probs=70.7
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeE
Q 043164 281 YAVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKL 360 (1049)
Q Consensus 281 ~~~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i 360 (1049)
....++++|||+|||..+|+++|+++|+.||.|..|.|+ +|||||+|.+.++|.+||+.| ||..|+|+.|
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l 95 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEV--HGKSFANQPL 95 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHH--TTCEETTEEC
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHc--CCCEECCeEE
Confidence 344677899999999999999999999999999999997 689999999999999999999 9999999999
Q ss_pred EEeecCC
Q 043164 361 FFEYSSK 367 (1049)
Q Consensus 361 ~V~~A~~ 367 (1049)
.|.|+..
T Consensus 96 ~V~~a~~ 102 (108)
T 2jvo_A 96 EVVYSKL 102 (108)
T ss_dssp EEESCSC
T ss_pred EEEEecC
Confidence 9999843
No 255
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=3.3e-13 Score=126.40 Aligned_cols=80 Identities=25% Similarity=0.276 Sum_probs=74.3
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeee-EEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKD-LRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVA 524 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~-v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~ 524 (1049)
+..+|||+|||..+++++|+++|++||.|.. |.|+.+ .++.++|||||+|.+.++|.+||.. ++..| +|+.|.|.
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~--~gr~i~v~ 89 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERI--GHRYIEIF 89 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCS--SSSCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-Ccchh--CCcEEEEE
Confidence 4679999999999999999999999999987 889888 6899999999999999999999997 88888 79999999
Q ss_pred EeecC
Q 043164 525 YAKSI 529 (1049)
Q Consensus 525 ~Ak~k 529 (1049)
++...
T Consensus 90 ~~~~~ 94 (104)
T 1wg5_A 90 KSSRA 94 (104)
T ss_dssp EECTT
T ss_pred ECCHH
Confidence 98765
No 256
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.44 E-value=1.6e-13 Score=131.42 Aligned_cols=76 Identities=17% Similarity=0.266 Sum_probs=70.1
Q ss_pred ceEEEcCC----CCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCC----HHH----HHHHHH--HhcCCC
Q 043164 287 GTIVVKGL----SQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPS----VGA----ARAMMD--RIGDDG 352 (1049)
Q Consensus 287 ~~L~V~nL----p~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~----~e~----A~~Al~--~l~~ng 352 (1049)
..|||+|| |+.+++++|+++|+.||+|.+|.++.|+.||.++|||||+|.+ +++ |.+|+. .| +|
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~l--ng 80 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHES--SG 80 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTT--TC
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhh--cC
Confidence 68999999 9999999999999999999999999999999999999999996 433 788888 66 99
Q ss_pred eeeCCeeEEEee
Q 043164 353 LVVDGRKLFFEY 364 (1049)
Q Consensus 353 ~~i~Gr~i~V~~ 364 (1049)
..|+|+.|+|.+
T Consensus 81 ~~I~Gr~irV~l 92 (136)
T 2j8a_A 81 CFIMGFKFEVIL 92 (136)
T ss_dssp EEETTEEEEEEE
T ss_pred CeecCcEEEEEE
Confidence 999999999998
No 257
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.44 E-value=1.2e-13 Score=148.25 Aligned_cols=82 Identities=18% Similarity=0.230 Sum_probs=77.0
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccC--CeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHA--PIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRV 523 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG--~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V 523 (1049)
...+|||+||+..+++++|+++|++|| .|+.|.|++|+.++.++|||||+|.+.++|.+||+.|||..| +|+.|+|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~--~Gr~l~V 144 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKREL--HGQNPVV 144 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCB--TTBCCEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeE--CCEEeEE
Confidence 457899999999999999999999999 999999999999999999999999999999999999999998 7999999
Q ss_pred EEeecC
Q 043164 524 AYAKSI 529 (1049)
Q Consensus 524 ~~Ak~k 529 (1049)
.||++.
T Consensus 145 ~~a~~~ 150 (229)
T 3q2s_C 145 TPVNKQ 150 (229)
T ss_dssp EECCHH
T ss_pred EECCCC
Confidence 998764
No 258
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.43 E-value=1e-13 Score=131.50 Aligned_cols=81 Identities=17% Similarity=0.180 Sum_probs=72.0
Q ss_pred CCcceEEEeCCCcc-CcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEE
Q 043164 445 GPTHVLVVRGLDEY-ADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRV 523 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~-~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V 523 (1049)
.|+++|||+|||+. +++++|+++|++||.|..|.|++ ++|||||+|.+.++|.+|+..|++..+.++|+.|+|
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 96 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 36789999999998 99999999999999999999985 368999999999999999999986554348999999
Q ss_pred EEeecCCC
Q 043164 524 AYAKSILG 531 (1049)
Q Consensus 524 ~~Ak~k~~ 531 (1049)
.||+.+..
T Consensus 97 ~~a~~~~~ 104 (112)
T 1x4f_A 97 DLSEKYKK 104 (112)
T ss_dssp EEECSCSS
T ss_pred EECccccc
Confidence 99987644
No 259
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.43 E-value=4.6e-13 Score=123.86 Aligned_cols=76 Identities=22% Similarity=0.430 Sum_probs=69.7
Q ss_pred cCCCCCceEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCee
Q 043164 281 YAVAPSGTIVVKGLSQ-KTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRK 359 (1049)
Q Consensus 281 ~~~~ps~~L~V~nLp~-~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~ 359 (1049)
....++++|||+|||. .+++++|+++|+.||.|..|.|. +|||||+|.+.++|.+||..| +|..|+|+.
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l--~g~~~~g~~ 86 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXE--SQEMNFGKK 86 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHH--TTSEETTEE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHc--CCCEECCEE
Confidence 4456789999999998 99999999999999999999983 689999999999999999999 999999999
Q ss_pred EEEeecC
Q 043164 360 LFFEYSS 366 (1049)
Q Consensus 360 i~V~~A~ 366 (1049)
|.|.++.
T Consensus 87 l~V~~a~ 93 (97)
T 2xnq_A 87 LILEVSS 93 (97)
T ss_dssp CEEEECC
T ss_pred EEEEecC
Confidence 9999974
No 260
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=2.9e-13 Score=124.95 Aligned_cols=78 Identities=22% Similarity=0.349 Sum_probs=70.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEE
Q 043164 283 VAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFF 362 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V 362 (1049)
...+++|||+|||..+|+++|+++|+.||.|. +.++.+ .++|||||+|.+.++|..||+.| ||..|+|+.|.|
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~V 88 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCL--QGLRLGTDTLRV 88 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHH--TTCCSSSSCCEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHh--CCCEECCcEEEE
Confidence 34568999999999999999999999999996 666654 57899999999999999999999 999999999999
Q ss_pred eecCC
Q 043164 363 EYSSK 367 (1049)
Q Consensus 363 ~~A~~ 367 (1049)
.++..
T Consensus 89 ~~a~~ 93 (97)
T 2e5j_A 89 ALARQ 93 (97)
T ss_dssp EECCC
T ss_pred EEcCC
Confidence 99743
No 261
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.43 E-value=1.8e-13 Score=125.87 Aligned_cols=77 Identities=29% Similarity=0.495 Sum_probs=70.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEe
Q 043164 284 APSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFE 363 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~ 363 (1049)
.+.++|||+|||..+|+++|+++|+.||.|..+ ..++.++|||||+|.+.++|..||..| +|..|+|+.|.|.
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEK--QGAEIDGRSVSLY 86 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHT--TEEEETTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHh--CCCEECCeEEEEE
Confidence 466899999999999999999999999987655 357899999999999999999999999 9999999999999
Q ss_pred ecCC
Q 043164 364 YSSK 367 (1049)
Q Consensus 364 ~A~~ 367 (1049)
++..
T Consensus 87 ~a~~ 90 (96)
T 1fjc_A 87 YTGE 90 (96)
T ss_dssp ECSS
T ss_pred EcCC
Confidence 9843
No 262
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=4.3e-13 Score=126.57 Aligned_cols=79 Identities=23% Similarity=0.500 Sum_probs=73.4
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~ 525 (1049)
+.++|||+|||..+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+||..|||..| +|+.|+|.|
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~~ 95 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTI--EGHVVKCYW 95 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEE--CCcEEEEEe
Confidence 4579999999999999999999999999999999976 68999999999999999999999988 799999999
Q ss_pred eecCCCC
Q 043164 526 AKSILGP 532 (1049)
Q Consensus 526 Ak~k~~~ 532 (1049)
|++....
T Consensus 96 a~~~~~~ 102 (109)
T 1x4g_A 96 GKESPDM 102 (109)
T ss_dssp CCCCCSS
T ss_pred cCCCCCC
Confidence 9887543
No 263
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.43 E-value=4.4e-13 Score=124.12 Aligned_cols=79 Identities=25% Similarity=0.316 Sum_probs=73.1
Q ss_pred CCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEE
Q 043164 445 GPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVA 524 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~ 524 (1049)
.+.++|||+|||..+++++|+++|++||.|..|.|+++ +|||||+|.+.++|.+|++.|||..| +|+.|+|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~--~g~~l~v~ 84 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPL--RGKQLRVR 84 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCB--TTBCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEe--CCceEEEE
Confidence 35689999999999999999999999999999999865 68999999999999999999999998 79999999
Q ss_pred EeecCCC
Q 043164 525 YAKSILG 531 (1049)
Q Consensus 525 ~Ak~k~~ 531 (1049)
|++++..
T Consensus 85 ~a~~~~~ 91 (99)
T 2cpj_A 85 FACHSAS 91 (99)
T ss_dssp ESSCCSC
T ss_pred EcCCCCC
Confidence 9988644
No 264
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=8e-13 Score=122.39 Aligned_cols=76 Identities=24% Similarity=0.409 Sum_probs=69.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhc--CCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCee
Q 043164 282 AVAPSGTIVVKGLSQKTTEEDLYQILAEW--GPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRK 359 (1049)
Q Consensus 282 ~~~ps~~L~V~nLp~~~tee~L~~~F~~~--G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~ 359 (1049)
...+.++|||+|||..+|+++|+++|+.| |.|..|.++ +|||||+|.+.++|.+||..| |+..|+|+.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~ 80 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKAL--NGKVLDGSP 80 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHH--SSEEETTEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHh--CCCEeCCcE
Confidence 34567899999999999999999999999 899998875 569999999999999999999 999999999
Q ss_pred EEEeecCC
Q 043164 360 LFFEYSSK 367 (1049)
Q Consensus 360 i~V~~A~~ 367 (1049)
|.|.++..
T Consensus 81 l~v~~a~~ 88 (99)
T 2cpd_A 81 IEVTLAKP 88 (99)
T ss_dssp EEEECCCC
T ss_pred EEEEECCC
Confidence 99999853
No 265
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.43 E-value=1.9e-13 Score=134.58 Aligned_cols=79 Identities=18% Similarity=0.209 Sum_probs=74.3
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCC---eeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAP---IKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILR 522 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~---I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~ 522 (1049)
...+|||+|||+.+|+++|+++|++||. |..|.|++|+. |.++|||||+|.+.++|.+||+ |||..| +|+.|.
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l--~gr~i~ 118 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESM--GHRYIE 118 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEES--SSSEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEE--CCEEEE
Confidence 4579999999999999999999999999 89999999986 9999999999999999999999 999888 799999
Q ss_pred EEEeec
Q 043164 523 VAYAKS 528 (1049)
Q Consensus 523 V~~Ak~ 528 (1049)
|.++..
T Consensus 119 V~~a~~ 124 (136)
T 2hgl_A 119 VFKSHR 124 (136)
T ss_dssp EEECCH
T ss_pred EEECCh
Confidence 999765
No 266
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.43 E-value=4.4e-13 Score=126.72 Aligned_cols=76 Identities=21% Similarity=0.434 Sum_probs=70.3
Q ss_pred CCCCceEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEE
Q 043164 283 VAPSGTIVVKGLSQK-TTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLF 361 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~~-~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~ 361 (1049)
..++++|||+|||.. +|+++|+++|+.||.|..|.| ++|||||+|.+.++|..||+.| ++..|+|+.|.
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~ 93 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGE--NGRVLAGQTLD 93 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHH--TTCEETTEECC
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHc--CCCEECCeEEE
Confidence 345689999999999 999999999999999999998 4789999999999999999999 99999999999
Q ss_pred EeecCCC
Q 043164 362 FEYSSKP 368 (1049)
Q Consensus 362 V~~A~~p 368 (1049)
|.++..+
T Consensus 94 V~~a~~~ 100 (110)
T 1wf1_A 94 INMAGEP 100 (110)
T ss_dssp EEESCCC
T ss_pred EEECCCC
Confidence 9998544
No 267
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.15 E-value=1.2e-14 Score=138.96 Aligned_cols=85 Identities=24% Similarity=0.312 Sum_probs=79.7
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeee--------EEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccC
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKD--------LRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKN 517 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~--------v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~ 517 (1049)
++++|||+|||..+++++|+++|++||.|.. |.|+.++.++.++|||||+|.+.++|.+||..|||..| +
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~ 83 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF--S 83 (116)
Confidence 5689999999999999999999999999998 99999988999999999999999999999999999988 7
Q ss_pred CeEEEEEEeecCCCC
Q 043164 518 GQILRVAYAKSILGP 532 (1049)
Q Consensus 518 Gr~L~V~~Ak~k~~~ 532 (1049)
|+.|+|.||+++...
T Consensus 84 g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 GNPIKVSFATRRADF 98 (116)
Confidence 999999999887543
No 268
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.42 E-value=4.5e-13 Score=123.17 Aligned_cols=79 Identities=25% Similarity=0.408 Sum_probs=72.1
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~ 525 (1049)
+..+|||+|||..+++++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..|||..| +|+.|+|.|
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~~ 87 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEI--DGRSVSLYY 87 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEE--TTEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCeEEEEEE
Confidence 57899999999999999999999999988766 23788999999999999999999999999988 799999999
Q ss_pred eecCCC
Q 043164 526 AKSILG 531 (1049)
Q Consensus 526 Ak~k~~ 531 (1049)
++++..
T Consensus 88 a~~~~~ 93 (96)
T 1fjc_A 88 TGEKGG 93 (96)
T ss_dssp CSSSCC
T ss_pred cCCCCC
Confidence 988643
No 269
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=1.2e-12 Score=121.08 Aligned_cols=78 Identities=33% Similarity=0.552 Sum_probs=71.3
Q ss_pred CCcceEEEeCCCccCcHHHHHHHhhcc--CCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEE
Q 043164 445 GPTHVLVVRGLDEYADEEMLRYEFSKH--APIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILR 522 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLre~Fs~f--G~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~ 522 (1049)
.++++|||+|||..+++++|+++|++| |.|..|.++ +|||||+|.+.++|.+||..|||..| +|+.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~ 82 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVL--DGSPIE 82 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEE--TTEEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEe--CCcEEE
Confidence 357899999999999999999999999 899998875 46999999999999999999999998 799999
Q ss_pred EEEeecCCCC
Q 043164 523 VAYAKSILGP 532 (1049)
Q Consensus 523 V~~Ak~k~~~ 532 (1049)
|.||+++...
T Consensus 83 v~~a~~~~~~ 92 (99)
T 2cpd_A 83 VTLAKPVDKD 92 (99)
T ss_dssp EECCCCCCCC
T ss_pred EEECCCCCCC
Confidence 9999887543
No 270
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.14 E-value=1.3e-14 Score=138.61 Aligned_cols=83 Identities=23% Similarity=0.433 Sum_probs=78.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeE--------EEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCee
Q 043164 283 VAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRH--------VRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLV 354 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~--------v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~ 354 (1049)
..+.++|||+|||..+|+++|+++|+.||.|.. |.|+.++.++.++|||||+|.+.++|.+||+.| |+..
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l--~g~~ 81 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWF--DGKE 81 (116)
Confidence 356789999999999999999999999999998 999999889999999999999999999999999 9999
Q ss_pred eCCeeEEEeecCC
Q 043164 355 VDGRKLFFEYSSK 367 (1049)
Q Consensus 355 i~Gr~i~V~~A~~ 367 (1049)
|.|+.|.|.++..
T Consensus 82 ~~g~~l~V~~a~~ 94 (116)
T 2lcw_A 82 FSGNPIKVSFATR 94 (116)
Confidence 9999999999853
No 271
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=4.8e-13 Score=120.05 Aligned_cols=74 Identities=28% Similarity=0.448 Sum_probs=69.4
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHh-CCCeeccCCeEEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEAT-NGTTLEKNGQILRVA 524 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~L-nG~~~~i~Gr~L~V~ 524 (1049)
+..+|||+|||..+++++|+++|++||.|..|.|+++ +|||||+|.+.++|.+|+..| +|..| +|+.|+|.
T Consensus 11 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~--~g~~l~v~ 82 (85)
T 2ytc_A 11 TITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIV--NGRRLNVK 82 (85)
T ss_dssp SCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEE--TTEECCEE
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeE--CCCEEEEE
Confidence 5679999999999999999999999999999999974 689999999999999999999 89888 79999999
Q ss_pred Eee
Q 043164 525 YAK 527 (1049)
Q Consensus 525 ~Ak 527 (1049)
||+
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 985
No 272
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=4e-13 Score=127.20 Aligned_cols=77 Identities=22% Similarity=0.252 Sum_probs=71.9
Q ss_pred cceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEEe
Q 043164 447 THVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYA 526 (1049)
Q Consensus 447 s~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~A 526 (1049)
..+|||+|||+.+++++|+++|+.| .|..|.|+.|+. |.++|||||+|.+.++|.+|| .|||..| +|+.|.|..+
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~--~gr~i~V~~a 90 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLM--IQRYVEVSPA 90 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEE--TTEEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeE--CCeEEEEEEC
Confidence 5799999999999999999999999 899999999975 999999999999999999999 6999988 7999999887
Q ss_pred ec
Q 043164 527 KS 528 (1049)
Q Consensus 527 k~ 528 (1049)
..
T Consensus 91 ~~ 92 (109)
T 2dnn_A 91 TE 92 (109)
T ss_dssp CH
T ss_pred Cc
Confidence 55
No 273
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.42 E-value=1e-13 Score=123.53 Aligned_cols=72 Identities=25% Similarity=0.371 Sum_probs=66.7
Q ss_pred ceEEEeCCCccC------cHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCe-E
Q 043164 448 HVLVVRGLDEYA------DEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQ-I 520 (1049)
Q Consensus 448 ~~LfV~NLp~~~------teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr-~ 520 (1049)
++|||+|||..+ ++++|+++|++||.|..|.|++ .+|.++|||||+|.+.++|.+|+..|||..| +|+ .
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~--~g~~~ 77 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKL--DKQHT 77 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTTBCCCEEEEEESSHHHHHHHHTTSSSCCC--SSSSC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCCcEeEEEEEEECCHHHHHHHHHHhcCccc--CCcee
Confidence 589999999999 7899999999999999999884 5889999999999999999999999999999 688 7
Q ss_pred EEE
Q 043164 521 LRV 523 (1049)
Q Consensus 521 L~V 523 (1049)
|+|
T Consensus 78 l~V 80 (81)
T 2krb_A 78 FRV 80 (81)
T ss_dssp CCC
T ss_pred EEe
Confidence 776
No 274
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=4.3e-13 Score=122.64 Aligned_cols=76 Identities=22% Similarity=0.436 Sum_probs=68.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCC-eeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCC-eeeCCeeE
Q 043164 283 VAPSGTIVVKGLSQKTTEEDLYQILAEWGP-LRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDG-LVVDGRKL 360 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~~~tee~L~~~F~~~G~-i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng-~~i~Gr~i 360 (1049)
..+.++|||+|||..+|+++|+++|+.||. |..+.+. ++|||||+|.+.++|.+||+.| |+ ..|+|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l--~g~~~~~g~~l 75 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETL--SGKVELHGKIM 75 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHH--TTTCEETTEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHc--cCCeeECCEEE
Confidence 456789999999999999999999999999 5555552 4789999999999999999999 99 99999999
Q ss_pred EEeecCC
Q 043164 361 FFEYSSK 367 (1049)
Q Consensus 361 ~V~~A~~ 367 (1049)
.|.++..
T Consensus 76 ~v~~a~~ 82 (93)
T 2cqh_A 76 EVDYSVS 82 (93)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999853
No 275
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.41 E-value=6.6e-13 Score=124.84 Aligned_cols=81 Identities=22% Similarity=0.254 Sum_probs=72.9
Q ss_pred CcceEEEeCCCc-----cCcHHHHHHHhhccCCeeeEEEeecCCC-CceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCe
Q 043164 446 PTHVLVVRGLDE-----YADEEMLRYEFSKHAPIKDLRLVRDKFT-HVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQ 519 (1049)
Q Consensus 446 ps~~LfV~NLp~-----~~teedLre~Fs~fG~I~~v~I~rD~~t-g~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr 519 (1049)
|+++|+|+||.. ..++++|+++|++||.|..|.|++++.+ +.++|||||+|.+.++|.+|+..|||..| +|+
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~--~Gr 84 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYF--GGR 84 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEE--TTE
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEE--CCc
Confidence 688999999973 2378999999999999999999998654 68899999999999999999999999999 799
Q ss_pred EEEEEEeec
Q 043164 520 ILRVAYAKS 528 (1049)
Q Consensus 520 ~L~V~~Ak~ 528 (1049)
.|.|.|+..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999865
No 276
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.41 E-value=1.1e-12 Score=122.30 Aligned_cols=76 Identities=26% Similarity=0.505 Sum_probs=70.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEE
Q 043164 283 VAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFF 362 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V 362 (1049)
..+.++|||+|||..+|+++|+++|+.||.|..|.|++ |||||+|.+.++|.+||+.| ++..|.|+.|.|
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v 77 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEM--NGKDLEGENIEI 77 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHH--TTEEETTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHH--CCCccCCCEEEE
Confidence 35678999999999999999999999999999999873 49999999999999999999 999999999999
Q ss_pred eecCCC
Q 043164 363 EYSSKP 368 (1049)
Q Consensus 363 ~~A~~p 368 (1049)
.++..+
T Consensus 78 ~~a~~~ 83 (103)
T 2dgu_A 78 VFAKPP 83 (103)
T ss_dssp EECCCC
T ss_pred EEcCCC
Confidence 998543
No 277
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.41 E-value=9.8e-14 Score=137.07 Aligned_cols=79 Identities=23% Similarity=0.285 Sum_probs=72.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEe
Q 043164 284 APSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFE 363 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~ 363 (1049)
....+|||+|||+.+|+++|+++|+.|| |+.|.|+.|+. |+++|||||+|.+.++|.+|| .+ |+..|+|+.|.|.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~--~g~~l~gR~i~V~ 118 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SK--DRANMQHRYIELF 118 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TC--CSCSSSSCCCCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hh--CCCEECCEEEEEE
Confidence 4567999999999999999999999999 67999999975 999999999999999999999 77 9999999999999
Q ss_pred ecCC
Q 043164 364 YSSK 367 (1049)
Q Consensus 364 ~A~~ 367 (1049)
.+..
T Consensus 119 ~a~~ 122 (139)
T 2hgn_A 119 LNST 122 (139)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 9754
No 278
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=6.9e-13 Score=118.99 Aligned_cols=76 Identities=29% Similarity=0.484 Sum_probs=69.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEE
Q 043164 283 VAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFF 362 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V 362 (1049)
..+.++|||+|||..+|+++|+++|+.||.|..|.|+.+ +|||||+|.+.++|..||..| .++..|+|+.|.|
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l-~~~~~~~g~~l~v 81 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKS-FNKLIVNGRRLNV 81 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTT-TTTCEETTEECCE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHh-cCCeeECCCEEEE
Confidence 356789999999999999999999999999999999874 689999999999999999965 3789999999999
Q ss_pred eec
Q 043164 363 EYS 365 (1049)
Q Consensus 363 ~~A 365 (1049)
.|+
T Consensus 82 ~~a 84 (85)
T 2ytc_A 82 KWG 84 (85)
T ss_dssp EEC
T ss_pred Eec
Confidence 986
No 279
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.41 E-value=7e-13 Score=133.05 Aligned_cols=82 Identities=23% Similarity=0.423 Sum_probs=78.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEE
Q 043164 283 VAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFF 362 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V 362 (1049)
..+..+|||+|||..+|+++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||..| ||..|+|+.|.|
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~i~v 161 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSM--QGQDLNGRPLRI 161 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHH--TTCEETTEECEE
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh--CCCccCCcEEEE
Confidence 456789999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred eecC
Q 043164 363 EYSS 366 (1049)
Q Consensus 363 ~~A~ 366 (1049)
.||.
T Consensus 162 ~~a~ 165 (166)
T 3md3_A 162 NWAA 165 (166)
T ss_dssp EESC
T ss_pred EecC
Confidence 9973
No 280
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.41 E-value=4.2e-13 Score=127.39 Aligned_cols=78 Identities=18% Similarity=0.116 Sum_probs=71.1
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccC-CeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHA-PIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVA 524 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG-~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~ 524 (1049)
...+|||+|||+.+++++|+++|++|| .|..|.|+.+ .++|||||+|.+.++|.+||+.|||..| +|+.|+|.
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l--~Gr~i~V~ 100 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEF--RGSVITVE 100 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEE--TTEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEE--CCeEEEEE
Confidence 357999999999999999999999999 8999998643 3789999999999999999999999999 79999999
Q ss_pred EeecC
Q 043164 525 YAKSI 529 (1049)
Q Consensus 525 ~Ak~k 529 (1049)
+++..
T Consensus 101 ~a~~~ 105 (111)
T 2jvr_A 101 RDDNP 105 (111)
T ss_dssp ESCC-
T ss_pred ECCCC
Confidence 98764
No 281
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=6.6e-13 Score=121.39 Aligned_cols=78 Identities=24% Similarity=0.357 Sum_probs=69.7
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCC-eeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCC-CeeccCCeEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAP-IKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNG-TTLEKNGQILRV 523 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~-I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG-~~~~i~Gr~L~V 523 (1049)
++++|||+|||..+++++|+++|++||. |..+.|. ++|||||+|.+.++|.+|+..||| ..| +|+.|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~--~g~~l~v 77 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVEL--HGKIMEV 77 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEE--TTEECEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeE--CCEEEEE
Confidence 5679999999999999999999999999 6666553 578999999999999999999999 888 7999999
Q ss_pred EEeecCCCC
Q 043164 524 AYAKSILGP 532 (1049)
Q Consensus 524 ~~Ak~k~~~ 532 (1049)
.||+++...
T Consensus 78 ~~a~~~~~~ 86 (93)
T 2cqh_A 78 DYSVSKKLR 86 (93)
T ss_dssp EECCCCCCC
T ss_pred EEccCcccc
Confidence 999887543
No 282
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.41 E-value=4.4e-13 Score=127.60 Aligned_cols=79 Identities=24% Similarity=0.384 Sum_probs=73.7
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~ 525 (1049)
++++|||+|||..+++++|+++|++||.|..|.|+.+. .++|||||+|.+.++|.+|+..|||..| +|+.|.|.|
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v~~ 81 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP---ETRGTAYVVYEDIFDAKNAVDHLSGFNV--SNRYLVVLY 81 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST---TTTTCEEEEESSHHHHHHHHHHHTTCBS--SSCBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC---CCCcEEEEEECCHHHHHHHHHHcCCCEE--CCeEEEEEE
Confidence 56899999999999999999999999999999999764 4689999999999999999999999988 799999999
Q ss_pred eecC
Q 043164 526 AKSI 529 (1049)
Q Consensus 526 Ak~k 529 (1049)
+++.
T Consensus 82 a~~~ 85 (115)
T 3lqv_A 82 YNAN 85 (115)
T ss_dssp CCHH
T ss_pred ecCC
Confidence 9875
No 283
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.40 E-value=7.3e-13 Score=140.11 Aligned_cols=83 Identities=31% Similarity=0.488 Sum_probs=77.6
Q ss_pred CCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEE
Q 043164 445 GPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVA 524 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~ 524 (1049)
.|+.+|||+|||..+|+++|+++|++||.|..|+|++|+.++.++|||||+|.+.++|.+||..||+..+ .|+.|+|.
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~--~g~~i~~~ 90 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVI--KGKPVRIM 90 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhc--CCcccccc
Confidence 3678999999999999999999999999999999999999999999999999999999999999999999 79999999
Q ss_pred EeecC
Q 043164 525 YAKSI 529 (1049)
Q Consensus 525 ~Ak~k 529 (1049)
++...
T Consensus 91 ~~~~~ 95 (213)
T 4f02_A 91 WSQRD 95 (213)
T ss_dssp ECCCC
T ss_pred ccccc
Confidence 97653
No 284
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=5.9e-13 Score=122.86 Aligned_cols=78 Identities=27% Similarity=0.304 Sum_probs=71.0
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~ 525 (1049)
.+.+|||+|||..+++++|+++|++||.|. +.|+.+ .++|||||+|.+.++|.+|+..|||..| +|+.|+|.|
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V~~ 90 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRL--GTDTLRVAL 90 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCS--SSSCCEEEE
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEE--CCcEEEEEE
Confidence 467999999999999999999999999997 777754 5789999999999999999999999998 799999999
Q ss_pred eecCC
Q 043164 526 AKSIL 530 (1049)
Q Consensus 526 Ak~k~ 530 (1049)
|+++.
T Consensus 91 a~~~~ 95 (97)
T 2e5j_A 91 ARQQR 95 (97)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 98763
No 285
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.40 E-value=3.2e-13 Score=125.49 Aligned_cols=77 Identities=26% Similarity=0.435 Sum_probs=72.2
Q ss_pred ceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEEee
Q 043164 448 HVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYAK 527 (1049)
Q Consensus 448 ~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~Ak 527 (1049)
++|||+|||..+++++|+++|++||.|..|.|+.+ ++|||||+|.+.++|.+|+..|||..| +|+.|+|.|++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V~~a~ 73 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVI--CGSRVRVELST 73 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCS--SSCCCEEEESS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeE--CCcEEEEEEcc
Confidence 37999999999999999999999999999999987 689999999999999999999999988 79999999998
Q ss_pred cCCC
Q 043164 528 SILG 531 (1049)
Q Consensus 528 ~k~~ 531 (1049)
++..
T Consensus 74 ~~~~ 77 (101)
T 2hvz_A 74 GMPR 77 (101)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8754
No 286
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.40 E-value=3.9e-13 Score=157.33 Aligned_cols=81 Identities=25% Similarity=0.518 Sum_probs=77.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEe
Q 043164 284 APSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFE 363 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~ 363 (1049)
.+.++|||+|||+.+|+++|.++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||..| ||+.|+|+.|.|.
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l--ng~~i~gr~i~V~ 177 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHA--DGKKIDGRRVLVD 177 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHc--CCCEECCEEEEEE
Confidence 45689999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred ecC
Q 043164 364 YSS 366 (1049)
Q Consensus 364 ~A~ 366 (1049)
++.
T Consensus 178 ~a~ 180 (437)
T 3pgw_S 178 VER 180 (437)
T ss_pred EeC
Confidence 974
No 287
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.40 E-value=1.7e-13 Score=135.81 Aligned_cols=84 Identities=24% Similarity=0.392 Sum_probs=73.4
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEE--Eee---cCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeee
Q 043164 281 YAVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVR--VIK---ERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVV 355 (1049)
Q Consensus 281 ~~~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~--i~~---dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i 355 (1049)
.+..++++|||+|||+.+|+++|+++|+.||.|..|. ++. ...+|.++|||||+|.+.++|..||..| ||..|
T Consensus 40 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~l--ng~~~ 117 (143)
T 3egn_A 40 EPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEA--NGYVL 117 (143)
T ss_dssp CCCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHH--TTBEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHh--CCCEe
Confidence 3456789999999999999999999999999987641 111 1347899999999999999999999999 99999
Q ss_pred CCeeEEEeecC
Q 043164 356 DGRKLFFEYSS 366 (1049)
Q Consensus 356 ~Gr~i~V~~A~ 366 (1049)
.|+.|.|.++.
T Consensus 118 ~g~~l~V~~a~ 128 (143)
T 3egn_A 118 FGKPMVVQFAR 128 (143)
T ss_dssp TTEECEEEECC
T ss_pred CCcEEEEEECC
Confidence 99999999984
No 288
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.40 E-value=3.5e-13 Score=127.90 Aligned_cols=74 Identities=18% Similarity=0.260 Sum_probs=69.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEee
Q 043164 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEY 364 (1049)
Q Consensus 285 ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~ 364 (1049)
..++|||+|||..+|+++|+++|++||.|..|.|+. ++|||||+|.+.++|..||..| ||..|+|+.|.|.|
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l~V~~ 80 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHL--AYSKFHHVPLYLEW 80 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHH--TTCBSSSSBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHh--CCCEECCeEEEEEE
Confidence 357999999999999999999999999999999875 5689999999999999999999 99999999999999
Q ss_pred cC
Q 043164 365 SS 366 (1049)
Q Consensus 365 A~ 366 (1049)
+.
T Consensus 81 a~ 82 (111)
T 1whx_A 81 AP 82 (111)
T ss_dssp EE
T ss_pred CC
Confidence 74
No 289
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.40 E-value=3.5e-13 Score=125.17 Aligned_cols=76 Identities=20% Similarity=0.315 Sum_probs=70.6
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~ 525 (1049)
..++|||+|||..+++++|+++|++||.|..|.|++ ++|||||+|.+.++|.+|+..|||..| +|+.|+|.|
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V~~ 97 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPF--QGRNLRTGW 97 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEE--TTEECCCCB
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeE--CCeEEEEEe
Confidence 357999999999999999999999999999999984 578999999999999999999999999 799999999
Q ss_pred eecC
Q 043164 526 AKSI 529 (1049)
Q Consensus 526 Ak~k 529 (1049)
|+++
T Consensus 98 a~~~ 101 (101)
T 2la4_A 98 GKER 101 (101)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 8763
No 290
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.40 E-value=1.4e-12 Score=121.66 Aligned_cols=77 Identities=31% Similarity=0.554 Sum_probs=71.2
Q ss_pred CCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEE
Q 043164 445 GPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVA 524 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~ 524 (1049)
.++++|||+|||..+++++|+++|++||.|..|.|++ |||||+|.+.++|.+||..|||..| +|+.|+|.
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~ 78 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDL--EGENIEIV 78 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEE--TTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCcc--CCCEEEEE
Confidence 3568999999999999999999999999999999874 5999999999999999999999998 79999999
Q ss_pred EeecCCC
Q 043164 525 YAKSILG 531 (1049)
Q Consensus 525 ~Ak~k~~ 531 (1049)
|++++..
T Consensus 79 ~a~~~~~ 85 (103)
T 2dgu_A 79 FAKPPDQ 85 (103)
T ss_dssp ECCCCCC
T ss_pred EcCCCcc
Confidence 9988644
No 291
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.40 E-value=4e-13 Score=123.83 Aligned_cols=75 Identities=24% Similarity=0.499 Sum_probs=68.7
Q ss_pred CCCCCceEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeE
Q 043164 282 AVAPSGTIVVKGLSQ-KTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKL 360 (1049)
Q Consensus 282 ~~~ps~~L~V~nLp~-~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i 360 (1049)
...++++|||+|||. .+|+++|+++|+.||+|..|.|. +|||||+|.+.++|..||+.| ++..|.|+.|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l 75 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECE--SQEMNFGKKL 75 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHH--TCSSCBTTTB
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHc--CCCeeCCcEE
Confidence 346789999999998 99999999999999999999984 679999999999999999999 9999999999
Q ss_pred EEeecC
Q 043164 361 FFEYSS 366 (1049)
Q Consensus 361 ~V~~A~ 366 (1049)
.|.++.
T Consensus 76 ~V~~a~ 81 (96)
T 2kvi_A 76 ILEVSS 81 (96)
T ss_dssp CEEEEE
T ss_pred EEEEcC
Confidence 999984
No 292
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.40 E-value=1.2e-13 Score=120.88 Aligned_cols=75 Identities=25% Similarity=0.354 Sum_probs=70.6
Q ss_pred eEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEEe
Q 043164 449 VLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYA 526 (1049)
Q Consensus 449 ~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~A 526 (1049)
+|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+.. ++..| +|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~--~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNV--GLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCB--TTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeE--CCEEEEEEEC
Confidence 589999999999999999999999999999999999999999999999999999999985 77777 7999999875
No 293
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.40 E-value=6.2e-13 Score=125.60 Aligned_cols=76 Identities=32% Similarity=0.496 Sum_probs=71.2
Q ss_pred CCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEE
Q 043164 445 GPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVA 524 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~ 524 (1049)
.++++|||+|||..+++++|+++|++||.|..|.|+ +|||||+|.+.++|.+|+..|||..| +|+.|.|.
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V~ 98 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSF--ANQPLEVV 98 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEE--CCeEEEEE
Confidence 357899999999999999999999999999999998 58999999999999999999999999 79999999
Q ss_pred EeecCC
Q 043164 525 YAKSIL 530 (1049)
Q Consensus 525 ~Ak~k~ 530 (1049)
|+++..
T Consensus 99 ~a~~~~ 104 (108)
T 2jvo_A 99 YSKLPA 104 (108)
T ss_dssp SCSCCC
T ss_pred EecCCC
Confidence 998763
No 294
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.40 E-value=2.1e-13 Score=126.92 Aligned_cols=78 Identities=23% Similarity=0.525 Sum_probs=73.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEe
Q 043164 284 APSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFE 363 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~ 363 (1049)
.++++|||+|||..+|+++|+++|+.||.|..|.|+.++ +|.++|||||+|.+.++|.+||. ++..|+|+.|.|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~----~~~~~~g~~l~v~ 81 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE----SQINFHGKKLKLG 81 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT----CCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh----CCCeECCEEEEEE
Confidence 356899999999999999999999999999999999998 99999999999999999999996 7889999999999
Q ss_pred ecC
Q 043164 364 YSS 366 (1049)
Q Consensus 364 ~A~ 366 (1049)
++.
T Consensus 82 ~a~ 84 (102)
T 2xs2_A 82 PAI 84 (102)
T ss_dssp EEE
T ss_pred ECC
Confidence 973
No 295
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.40 E-value=1e-12 Score=121.52 Aligned_cols=74 Identities=20% Similarity=0.235 Sum_probs=69.6
Q ss_pred CcceEEEeCCCc-cCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEE
Q 043164 446 PTHVLVVRGLDE-YADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVA 524 (1049)
Q Consensus 446 ps~~LfV~NLp~-~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~ 524 (1049)
++++|||+|||. .+++++|+++|++||.|..|.|. +|||||+|.+.++|.+|+..|||..| +|+.|+|.
T Consensus 21 ~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V~ 90 (97)
T 2xnq_A 21 MKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMN--FGKKLILE 90 (97)
T ss_dssp TTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEE--TTEECEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEE--CCEEEEEE
Confidence 578999999998 99999999999999999999984 68999999999999999999999999 79999999
Q ss_pred EeecC
Q 043164 525 YAKSI 529 (1049)
Q Consensus 525 ~Ak~k 529 (1049)
|++++
T Consensus 91 ~a~~~ 95 (97)
T 2xnq_A 91 VSSSN 95 (97)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 98775
No 296
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.40 E-value=3e-13 Score=131.23 Aligned_cols=78 Identities=21% Similarity=0.272 Sum_probs=71.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCee--EEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeE
Q 043164 283 VAPSGTIVVKGLSQKTTEEDLYQILAEWGPLR--HVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKL 360 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~--~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i 360 (1049)
..+..+|||+|||+.+|+++|+++|+.| .|+ .|.|+.|+. |+++|||||+|.+.++|.+||+. ++..|+|+.|
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~---~~~~l~gR~I 113 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK---HKERIGHRYI 113 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT---TTCCBTTBCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH---CCCEECCEEE
Confidence 3456899999999999999999999999 566 999999986 99999999999999999999974 6799999999
Q ss_pred EEeec
Q 043164 361 FFEYS 365 (1049)
Q Consensus 361 ~V~~A 365 (1049)
.|..+
T Consensus 114 ~V~~a 118 (126)
T 2hgm_A 114 EVFKS 118 (126)
T ss_dssp CCEEE
T ss_pred EEEEC
Confidence 99886
No 297
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.40 E-value=4.7e-13 Score=137.79 Aligned_cols=81 Identities=25% Similarity=0.311 Sum_probs=77.3
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~ 525 (1049)
++++|||+|||..+++++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|.+||..|||..| +|+.|+|.|
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l--~Gr~l~V~~ 163 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPL--DGRPMDIQL 163 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBC--SSSBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEE--CCEEEEEEE
Confidence 56899999999999999999999999999999999998 899999999999999999999999999988 799999999
Q ss_pred eecC
Q 043164 526 AKSI 529 (1049)
Q Consensus 526 Ak~k 529 (1049)
|...
T Consensus 164 a~~~ 167 (177)
T 2f3j_A 164 VASQ 167 (177)
T ss_dssp ESSG
T ss_pred ecCC
Confidence 8765
No 298
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.39 E-value=1.4e-12 Score=123.22 Aligned_cols=76 Identities=21% Similarity=0.319 Sum_probs=70.4
Q ss_pred CcceEEEeCCCcc-CcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEE
Q 043164 446 PTHVLVVRGLDEY-ADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVA 524 (1049)
Q Consensus 446 ps~~LfV~NLp~~-~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~ 524 (1049)
++++|||+|||.. +++++|+++|++||.|..|.| ++|||||+|.+.++|.+||..|||..| +|+.|+|.
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~V~ 95 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVL--AGQTLDIN 95 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEE--TTEECCEE
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEE--CCeEEEEE
Confidence 4579999999999 999999999999999999998 468999999999999999999999999 79999999
Q ss_pred EeecCCC
Q 043164 525 YAKSILG 531 (1049)
Q Consensus 525 ~Ak~k~~ 531 (1049)
|++....
T Consensus 96 ~a~~~~~ 102 (110)
T 1wf1_A 96 MAGEPKP 102 (110)
T ss_dssp ESCCCCS
T ss_pred ECCCCCC
Confidence 9986543
No 299
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=3.3e-13 Score=130.52 Aligned_cols=78 Identities=17% Similarity=0.241 Sum_probs=72.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCe----eEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCee
Q 043164 284 APSGTIVVKGLSQKTTEEDLYQILAEWGPL----RHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRK 359 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~~~F~~~G~i----~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~ 359 (1049)
.+..+|||+|||+.+|+++|+++|+.||+| ..|.|+.+ .+|+++|||||+|.+.++|.+||+. ++..|+|+.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~---~~~~l~gR~ 96 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK---HKDLLGKRY 96 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT---TTEESSSCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh---CCCeeCCeE
Confidence 456899999999999999999999999986 68999998 4899999999999999999999964 889999999
Q ss_pred EEEeec
Q 043164 360 LFFEYS 365 (1049)
Q Consensus 360 i~V~~A 365 (1049)
|.|..+
T Consensus 97 i~V~~a 102 (123)
T 2dha_A 97 IELFRS 102 (123)
T ss_dssp ECCEEE
T ss_pred EEEEEC
Confidence 999886
No 300
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.39 E-value=1.7e-13 Score=129.12 Aligned_cols=80 Identities=19% Similarity=0.178 Sum_probs=74.5
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCC---eeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAP---IKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILR 522 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~---I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~ 522 (1049)
...+|||+|||..+++++|+++|+.||. |..|.|+.++. |.++|||||+|.+.++|.+||. |||..| +|+.|.
T Consensus 10 ~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~--~gr~i~ 85 (107)
T 2lmi_A 10 DVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYM--GQRYVE 85 (107)
T ss_dssp SCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCS--SSSCCC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCccee--CCeEEE
Confidence 4679999999999999999999999998 89999999986 9999999999999999999999 999887 799999
Q ss_pred EEEeecC
Q 043164 523 VAYAKSI 529 (1049)
Q Consensus 523 V~~Ak~k 529 (1049)
|.++.++
T Consensus 86 V~~a~~~ 92 (107)
T 2lmi_A 86 VYEINNE 92 (107)
T ss_dssp CEECCHH
T ss_pred EEECCHH
Confidence 9997653
No 301
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.39 E-value=4.4e-13 Score=123.53 Aligned_cols=79 Identities=22% Similarity=0.279 Sum_probs=71.1
Q ss_pred CCcceEEEeCCCc-cCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEE
Q 043164 445 GPTHVLVVRGLDE-YADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRV 523 (1049)
Q Consensus 445 ~ps~~LfV~NLp~-~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V 523 (1049)
.++++|||+|||. .+++++|+++|++||.|..|.|. +|||||+|.+.++|.+|+..|||..| +|+.|+|
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~V 77 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMN--FGKKLIL 77 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSC--BTTTBCE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCee--CCcEEEE
Confidence 3678999999998 99999999999999999999984 58999999999999999999999988 6999999
Q ss_pred EEeecCCCCC
Q 043164 524 AYAKSILGPG 533 (1049)
Q Consensus 524 ~~Ak~k~~~~ 533 (1049)
.|+++...+.
T Consensus 78 ~~a~~~~~~~ 87 (96)
T 2kvi_A 78 EVSSSNARPQ 87 (96)
T ss_dssp EEEECCCC--
T ss_pred EEcCcCCCCC
Confidence 9998875543
No 302
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.39 E-value=6.6e-13 Score=132.61 Aligned_cols=78 Identities=26% Similarity=0.453 Sum_probs=73.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEE
Q 043164 282 AVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLF 361 (1049)
Q Consensus 282 ~~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~ 361 (1049)
...+.++|||+|||+.+|+++|+++|+.||.|..|.|+.+ ++|||||+|.+.++|..||..| ||..|+|++|.
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~ 141 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVREL--DGRTLCGCRVR 141 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHH--SSSCSSSSCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHc--CCCEECCeEEE
Confidence 3456789999999999999999999999999999999886 5899999999999999999999 99999999999
Q ss_pred EeecC
Q 043164 362 FEYSS 366 (1049)
Q Consensus 362 V~~A~ 366 (1049)
|.++.
T Consensus 142 v~~a~ 146 (150)
T 2i2y_A 142 VELSN 146 (150)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 99974
No 303
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.39 E-value=5.2e-13 Score=124.24 Aligned_cols=80 Identities=26% Similarity=0.468 Sum_probs=75.3
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~ 525 (1049)
+.++|||+|||..+++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|.+|+. +|..| +|+.|.|.+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~--~g~~l~v~~ 82 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINF--HGKKLKLGP 82 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEE--TTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeE--CCEEEEEEE
Confidence 46799999999999999999999999999999999998 99999999999999999999999 88888 799999999
Q ss_pred eecCC
Q 043164 526 AKSIL 530 (1049)
Q Consensus 526 Ak~k~ 530 (1049)
+.++.
T Consensus 83 a~~~~ 87 (102)
T 2xs2_A 83 AIRKQ 87 (102)
T ss_dssp EEECC
T ss_pred CCcCc
Confidence 98763
No 304
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.38 E-value=3.9e-13 Score=127.60 Aligned_cols=75 Identities=16% Similarity=0.140 Sum_probs=70.4
Q ss_pred cceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEEe
Q 043164 447 THVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYA 526 (1049)
Q Consensus 447 s~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~A 526 (1049)
.++|||+|||..+++++|+++|++||.|..|.|++ ++|||||+|.+.++|.+||..|||..| +|+.|.|.||
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V~~a 81 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKF--HHVPLYLEWA 81 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBS--SSSBCEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEE--CCeEEEEEEC
Confidence 57999999999999999999999999999999875 568999999999999999999999998 7999999999
Q ss_pred ecC
Q 043164 527 KSI 529 (1049)
Q Consensus 527 k~k 529 (1049)
+..
T Consensus 82 ~~~ 84 (111)
T 1whx_A 82 PIG 84 (111)
T ss_dssp ETT
T ss_pred CCC
Confidence 875
No 305
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.38 E-value=1.1e-12 Score=119.48 Aligned_cols=75 Identities=21% Similarity=0.237 Sum_probs=66.4
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~ 525 (1049)
+.++|||+|||..+++++|+++|++||.|..|.|+++ ++|||||+|.+.++|. .|+|..+.++|+.|.|.+
T Consensus 10 ~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~----~~~~~~~~~~g~~v~v~~ 80 (89)
T 3d2w_A 10 HGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQ----SLCGEDLIIKGISVHISN 80 (89)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHH----HHTTCEEEETTEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHH----HHcCCCcccCCEEEEEEE
Confidence 5689999999999999999999999999999999975 7899999999999987 367777777899999999
Q ss_pred eecC
Q 043164 526 AKSI 529 (1049)
Q Consensus 526 Ak~k 529 (1049)
|.++
T Consensus 81 a~~k 84 (89)
T 3d2w_A 81 AEPK 84 (89)
T ss_dssp CC--
T ss_pred cCCC
Confidence 9876
No 306
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.38 E-value=1.5e-12 Score=130.72 Aligned_cols=81 Identities=32% Similarity=0.500 Sum_probs=77.6
Q ss_pred cceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEEe
Q 043164 447 THVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYA 526 (1049)
Q Consensus 447 s~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~A 526 (1049)
+++|||+|||..+++++|+++|+.||.|..|.|++++.++.++|||||+|.+.++|.+|+..|+|..| +|+.|.|.|+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~--~g~~l~v~~~ 79 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL--QTKTIKVSYA 79 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEEC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCcc--CCceEEEEec
Confidence 57899999999999999999999999999999999998999999999999999999999999999999 7999999998
Q ss_pred ecC
Q 043164 527 KSI 529 (1049)
Q Consensus 527 k~k 529 (1049)
.+.
T Consensus 80 ~~~ 82 (167)
T 1fxl_A 80 RPS 82 (167)
T ss_dssp CCC
T ss_pred CCC
Confidence 765
No 307
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.38 E-value=8.3e-13 Score=119.66 Aligned_cols=73 Identities=19% Similarity=0.312 Sum_probs=68.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEe
Q 043164 284 APSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFE 363 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~ 363 (1049)
...++|||+|||..+|+++|+++|++| .|..|.|. .++|||||+|.+.++|.+||+.| ||..|+|+.|.|.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l--~g~~~~g~~l~V~ 73 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMF--HQYSFRGKDLIVQ 73 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHH--TTEEETTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHh--CCCeECCcEEEEE
Confidence 356899999999999999999999999 99999884 57899999999999999999999 9999999999999
Q ss_pred ec
Q 043164 364 YS 365 (1049)
Q Consensus 364 ~A 365 (1049)
++
T Consensus 74 ~a 75 (88)
T 1wg1_A 74 LQ 75 (88)
T ss_dssp EC
T ss_pred Ec
Confidence 97
No 308
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.38 E-value=1.3e-12 Score=137.46 Aligned_cols=83 Identities=14% Similarity=0.409 Sum_probs=79.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEe
Q 043164 284 APSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFE 363 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~ 363 (1049)
.+.++|||+|||..+|+++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||..| ||..|+|+.|.|.
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l--~g~~~~g~~i~V~ 200 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM--NLFDLGGQYLRVG 200 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH--TTCBCSSSBCEEE
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHc--cCCEeCCcEEEEE
Confidence 46689999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred ecCCC
Q 043164 364 YSSKP 368 (1049)
Q Consensus 364 ~A~~p 368 (1049)
|+..+
T Consensus 201 ~a~~~ 205 (216)
T 2qfj_A 201 KAVTP 205 (216)
T ss_dssp ECSSC
T ss_pred EecCC
Confidence 98543
No 309
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.38 E-value=1.2e-12 Score=131.98 Aligned_cols=82 Identities=32% Similarity=0.449 Sum_probs=78.4
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~ 525 (1049)
++++|||+|||..+++++|+++|++||.|..|.|++++.++.++|||||+|.+.++|.+|+..|+|..| +|+.|.|.|
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~--~g~~l~v~~ 79 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITV--RNKRLKVSY 79 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEe--CCcEEEEEe
Confidence 467999999999999999999999999999999999998999999999999999999999999999999 799999999
Q ss_pred eecC
Q 043164 526 AKSI 529 (1049)
Q Consensus 526 Ak~k 529 (1049)
+.+.
T Consensus 80 ~~~~ 83 (168)
T 1b7f_A 80 ARPG 83 (168)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8875
No 310
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.37 E-value=1.2e-12 Score=132.63 Aligned_cols=80 Identities=19% Similarity=0.564 Sum_probs=76.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEe
Q 043164 284 APSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFE 363 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~ 363 (1049)
....+|||+|||..+|+++|+++|++||+|..|.|+.++.+|.++|||||+|.+.++|.+|++.| ||..|+|+.|.|.
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~V~ 169 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL--NGMQLGDKKLLVQ 169 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHH--TTCEETTEECEEE
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHc--CCCEECCeEEEEE
Confidence 34689999999999999999999999999999999999889999999999999999999999999 9999999999999
Q ss_pred ec
Q 043164 364 YS 365 (1049)
Q Consensus 364 ~A 365 (1049)
||
T Consensus 170 ~A 171 (172)
T 2g4b_A 170 RA 171 (172)
T ss_dssp EC
T ss_pred eC
Confidence 96
No 311
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.37 E-value=4e-13 Score=133.13 Aligned_cols=84 Identities=25% Similarity=0.337 Sum_probs=72.5
Q ss_pred CCcceEEEeCCCccCcHHHHHHHhhccCCeeeEE--Eee---cCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCe
Q 043164 445 GPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLR--LVR---DKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQ 519 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~--I~r---D~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr 519 (1049)
.++++|||+|||..+++++|+++|++||.|..+. ++. ...++.++|||||+|.+.++|.+||..|||..| +|+
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~--~g~ 120 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVL--FGK 120 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEE--TTE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEe--CCc
Confidence 3578999999999999999999999999987741 111 123688999999999999999999999999999 799
Q ss_pred EEEEEEeecCC
Q 043164 520 ILRVAYAKSIL 530 (1049)
Q Consensus 520 ~L~V~~Ak~k~ 530 (1049)
.|.|.||++..
T Consensus 121 ~l~V~~a~~~~ 131 (143)
T 3egn_A 121 PMVVQFARSAR 131 (143)
T ss_dssp ECEEEECCCSC
T ss_pred EEEEEECCCCC
Confidence 99999998753
No 312
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=2.9e-12 Score=118.19 Aligned_cols=74 Identities=19% Similarity=0.290 Sum_probs=68.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEe
Q 043164 284 APSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFE 363 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~ 363 (1049)
.+.++|||+|| .+|+++|+++|+.||.|..|.|. .++|||||+|.+.++|.+||..| ++..|.|+.|.|.
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l--~g~~~~g~~l~v~ 82 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAEL--NGTQVESVQLKVN 82 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHT--TTEEETTEEEEEE
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHh--CCCeECCeEEEEE
Confidence 46689999996 89999999999999999999984 46789999999999999999999 9999999999999
Q ss_pred ecCC
Q 043164 364 YSSK 367 (1049)
Q Consensus 364 ~A~~ 367 (1049)
++..
T Consensus 83 ~a~~ 86 (97)
T 1x5p_A 83 IARK 86 (97)
T ss_dssp CCSS
T ss_pred ECCC
Confidence 9853
No 313
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=1.3e-12 Score=118.51 Aligned_cols=74 Identities=18% Similarity=0.287 Sum_probs=65.9
Q ss_pred CCCCce-EEEcCCCCCCCHHH----HHHHHhhc-CCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeC
Q 043164 283 VAPSGT-IVVKGLSQKTTEED----LYQILAEW-GPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVD 356 (1049)
Q Consensus 283 ~~ps~~-L~V~nLp~~~tee~----L~~~F~~~-G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~ 356 (1049)
.+|+.+ |||+|||..+++++ |.++|++| |.|.+| ++ |||||.|.+.++|.+|++.| +|..|.
T Consensus 5 ~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l--~G~~l~ 72 (96)
T 2diu_A 5 SSGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRM--ENEDVF 72 (96)
T ss_dssp CCCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHH--TTCCSS
T ss_pred CCCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHh--cCCccC
Confidence 456777 99999999999998 55899999 599888 33 89999999999999999999 999999
Q ss_pred CeeEEEeecCCC
Q 043164 357 GRKLFFEYSSKP 368 (1049)
Q Consensus 357 Gr~i~V~~A~~p 368 (1049)
|++|+|.||...
T Consensus 73 gr~i~v~~A~~~ 84 (96)
T 2diu_A 73 GNRIIVSFTPKN 84 (96)
T ss_dssp SSCCEEESSCCS
T ss_pred CceEEEEecCCC
Confidence 999999998543
No 314
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=1.9e-12 Score=118.70 Aligned_cols=75 Identities=21% Similarity=0.452 Sum_probs=68.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEe
Q 043164 284 APSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFE 363 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~ 363 (1049)
...++|||+|||..+|+++|+++|+.||.|..| +.++.+|. ||||+|.+.++|.+||+ | ++..|+|+.|.|.
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l--~g~~~~g~~l~V~ 77 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-Q--SQHSLGGHRLRVR 77 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-C--SCCEETTEECCCB
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-c--CCeEECCEEEEEE
Confidence 456799999999999999999999999999987 66666665 99999999999999999 9 9999999999999
Q ss_pred ecC
Q 043164 364 YSS 366 (1049)
Q Consensus 364 ~A~ 366 (1049)
++.
T Consensus 78 ~a~ 80 (94)
T 2e5g_A 78 PRE 80 (94)
T ss_dssp CSC
T ss_pred ECC
Confidence 874
No 315
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=9.4e-13 Score=125.41 Aligned_cols=78 Identities=24% Similarity=0.370 Sum_probs=70.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCC---CCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCee
Q 043164 283 VAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNS---GVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRK 359 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~t---g~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~ 359 (1049)
...+++|||+|||..+|+++|+++|++||+|. +.++.++.+ |.++|||||+|.+.++|.+||+.| + .++|+.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~--~--~~~G~~ 79 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC--L--EEDGKL 79 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS--E--EETTEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh--h--hcCCcE
Confidence 35678999999999999999999999999999 889888777 799999999999999999999987 4 489999
Q ss_pred EEEeec
Q 043164 360 LFFEYS 365 (1049)
Q Consensus 360 i~V~~A 365 (1049)
|.+..+
T Consensus 80 ~~~~~~ 85 (114)
T 2dnl_A 80 YLCVSS 85 (114)
T ss_dssp EEEECC
T ss_pred EEeccC
Confidence 988764
No 316
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=1.1e-12 Score=120.53 Aligned_cols=77 Identities=16% Similarity=0.324 Sum_probs=70.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEE-EEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEE
Q 043164 284 APSGTIVVKGLSQKTTEEDLYQILAEWGPLRHV-RVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFF 362 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v-~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V 362 (1049)
..+++|||+|||..+|+++|+++|+.||.|..| .|+.++.+| .|||+|.+.++|..||..| ||..|+|+.|.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l--~g~~~~g~~l~V 86 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKL--NGFQLENFTLKV 86 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHH--TTCBCSSCBCEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHh--CCCEECCcEEEE
Confidence 346899999999999999999999999999999 588887655 3999999999999999999 999999999999
Q ss_pred eecC
Q 043164 363 EYSS 366 (1049)
Q Consensus 363 ~~A~ 366 (1049)
.++.
T Consensus 87 ~~a~ 90 (96)
T 2e44_A 87 AYIP 90 (96)
T ss_dssp EECC
T ss_pred EEcC
Confidence 9984
No 317
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.36 E-value=1.5e-12 Score=131.19 Aligned_cols=80 Identities=18% Similarity=0.184 Sum_probs=71.6
Q ss_pred cceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEEe
Q 043164 447 THVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYA 526 (1049)
Q Consensus 447 s~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~A 526 (1049)
..+|||+||++.+++++|+++|++||.|..|.|+... ++|||||+|.+.++|..|++.|||..|..+++.|+|.||
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 4568999999999999999999999999999997542 579999999999999999999999999533599999999
Q ss_pred ecCC
Q 043164 527 KSIL 530 (1049)
Q Consensus 527 k~k~ 530 (1049)
+++.
T Consensus 122 k~~~ 125 (164)
T 1sjr_A 122 KLTS 125 (164)
T ss_dssp SSSS
T ss_pred cCCc
Confidence 9863
No 318
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=1e-12 Score=124.85 Aligned_cols=77 Identities=14% Similarity=0.344 Sum_probs=69.8
Q ss_pred CCCCCceEEE--cCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeee----
Q 043164 282 AVAPSGTIVV--KGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVV---- 355 (1049)
Q Consensus 282 ~~~ps~~L~V--~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i---- 355 (1049)
...|+++||| +||+..+|+++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+|++.| ||..|
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~l--nG~~~~~~l 92 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTL--NGKEVVDDL 92 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHT--TTCEEECTT
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHh--CCCEEcccc
Confidence 4467889999 779999999999999999999999988642 789999999999999999999 99988
Q ss_pred -CCeeEEEeecC
Q 043164 356 -DGRKLFFEYSS 366 (1049)
Q Consensus 356 -~Gr~i~V~~A~ 366 (1049)
.|++|.|.|+.
T Consensus 93 g~g~~l~v~~a~ 104 (114)
T 2cq2_A 93 GQKITLYLNFVE 104 (114)
T ss_dssp SCEEECEEEEES
T ss_pred CCCcEEEEEecc
Confidence 68999999974
No 319
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=5.4e-12 Score=116.40 Aligned_cols=76 Identities=29% Similarity=0.357 Sum_probs=69.7
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~ 525 (1049)
+.++|||+|| .+++++|+++|++||.|..|.|. .++|||||+|.+.++|.+||..|||..| +|+.|+|.|
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~g~~l~v~~ 83 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQV--ESVQLKVNI 83 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEE--TTEEEEEEC
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeE--CCeEEEEEE
Confidence 5689999996 89999999999999999999985 3678999999999999999999999998 799999999
Q ss_pred eecCCC
Q 043164 526 AKSILG 531 (1049)
Q Consensus 526 Ak~k~~ 531 (1049)
|+++..
T Consensus 84 a~~~~~ 89 (97)
T 1x5p_A 84 ARKQPM 89 (97)
T ss_dssp CSSCCC
T ss_pred CCCCCC
Confidence 988744
No 320
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.35 E-value=2.2e-12 Score=125.45 Aligned_cols=78 Identities=19% Similarity=0.239 Sum_probs=69.6
Q ss_pred ceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeE-EEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEEe
Q 043164 448 HVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGF-AFLHFHSVEDASKALEATNGTTLEKNGQILRVAYA 526 (1049)
Q Consensus 448 ~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGf-AFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~A 526 (1049)
-.|||+||+..+|+++|.++|++||.|..|.|+.. .+|| |||+|.+.++|.+|++.|||..|..+++.|+|.|+
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 45779999999999999999999999999998864 3688 99999999999999999999999622399999999
Q ss_pred ecCC
Q 043164 527 KSIL 530 (1049)
Q Consensus 527 k~k~ 530 (1049)
++..
T Consensus 104 k~~~ 107 (130)
T 3zzy_A 104 KLTS 107 (130)
T ss_dssp SCSS
T ss_pred CCCc
Confidence 8863
No 321
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.35 E-value=1.6e-12 Score=117.10 Aligned_cols=73 Identities=25% Similarity=0.498 Sum_probs=67.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhc----C-------CeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCC
Q 043164 283 VAPSGTIVVKGLSQKTTEEDLYQILAEW----G-------PLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDD 351 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~~~tee~L~~~F~~~----G-------~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~n 351 (1049)
..+.++|||+|||..+|+++|+++|+.| | +|.+|.++.+ +|||||+|.+.++|.+|| .| |
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l--~ 73 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AF--D 73 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GG--T
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hc--C
Confidence 3457899999999999999999999999 8 8999998865 689999999999999999 99 9
Q ss_pred CeeeCCeeEEEee
Q 043164 352 GLVVDGRKLFFEY 364 (1049)
Q Consensus 352 g~~i~Gr~i~V~~ 364 (1049)
+..|+|+.|.|+.
T Consensus 74 g~~~~g~~l~V~r 86 (87)
T 2hzc_A 74 GIIFQGQSLKIRR 86 (87)
T ss_dssp TCEETTEECEEEC
T ss_pred CCEECCeEEEEeC
Confidence 9999999999974
No 322
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.35 E-value=2.7e-12 Score=133.01 Aligned_cols=81 Identities=20% Similarity=0.572 Sum_probs=78.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEe
Q 043164 284 APSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFE 363 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~ 363 (1049)
.+.++|||+|||..+|+++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||+.| ||..|+|+.|.|.
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v~ 189 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL--NGMQLGDKKLLVQ 189 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHH--TTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHc--CCCEECCEEEEEE
Confidence 56789999999999999999999999999999999999889999999999999999999999999 9999999999999
Q ss_pred ecC
Q 043164 364 YSS 366 (1049)
Q Consensus 364 ~A~ 366 (1049)
++.
T Consensus 190 ~a~ 192 (198)
T 2yh0_A 190 RAS 192 (198)
T ss_dssp ESC
T ss_pred ECC
Confidence 984
No 323
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.35 E-value=1.5e-12 Score=124.62 Aligned_cols=78 Identities=18% Similarity=0.234 Sum_probs=70.5
Q ss_pred ceEEEeCC----CccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCC----HHH----HHHHHH--HhCCCe
Q 043164 448 HVLVVRGL----DEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHS----VED----ASKALE--ATNGTT 513 (1049)
Q Consensus 448 ~~LfV~NL----p~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s----~e~----A~kAl~--~LnG~~ 513 (1049)
..|||+|| |+.+++++|+.+|+.||.|.+|.++.|+.||.++|||||+|.+ +++ |.+|+. .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 47999999 9999999999999999999999999999999999999999996 433 788888 789999
Q ss_pred eccCCeEEEEEEee
Q 043164 514 LEKNGQILRVAYAK 527 (1049)
Q Consensus 514 ~~i~Gr~L~V~~Ak 527 (1049)
| +|+.|+|.+-.
T Consensus 83 I--~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 I--MGFKFEVILNK 94 (136)
T ss_dssp E--TTEEEEEEECC
T ss_pred e--cCcEEEEEECc
Confidence 9 79999999833
No 324
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=1.6e-12 Score=123.60 Aligned_cols=78 Identities=19% Similarity=0.332 Sum_probs=70.0
Q ss_pred CcceEEE--eCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCee---ccCCeE
Q 043164 446 PTHVLVV--RGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTL---EKNGQI 520 (1049)
Q Consensus 446 ps~~LfV--~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~---~i~Gr~ 520 (1049)
|+.+||| +||+..+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+|++.|||..| ..+|++
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 6789999 669999999999999999999999988753 68999999999999999999999987 225899
Q ss_pred EEEEEeecC
Q 043164 521 LRVAYAKSI 529 (1049)
Q Consensus 521 L~V~~Ak~k 529 (1049)
|.|.|++..
T Consensus 98 l~v~~a~~~ 106 (114)
T 2cq2_A 98 LYLNFVEKV 106 (114)
T ss_dssp CEEEEESCC
T ss_pred EEEEecccC
Confidence 999999765
No 325
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=2e-12 Score=118.80 Aligned_cols=78 Identities=22% Similarity=0.252 Sum_probs=71.4
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeE-EEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDL-RLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVA 524 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v-~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~ 524 (1049)
.+.+|||+|||..+++++|+++|++||.|..| .|+.++.++ .|||+|.+.++|.+|+..|||..| +|+.|+|.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~--~g~~l~V~ 87 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQL--ENFTLKVA 87 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBC--SSCBCEEE
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEE--CCcEEEEE
Confidence 46789999999999999999999999999999 588876543 499999999999999999999998 79999999
Q ss_pred EeecC
Q 043164 525 YAKSI 529 (1049)
Q Consensus 525 ~Ak~k 529 (1049)
||+++
T Consensus 88 ~a~~~ 92 (96)
T 2e44_A 88 YIPDE 92 (96)
T ss_dssp ECCCC
T ss_pred EcCcc
Confidence 99886
No 326
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=8.3e-13 Score=127.70 Aligned_cols=79 Identities=24% Similarity=0.289 Sum_probs=71.7
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCe----eeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPI----KDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQIL 521 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I----~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L 521 (1049)
...+|||+|||+.+|+++|+++|++||.| ..|.|+.+. +|.++|||||+|.+.++|.+||.. |+..| +|+.|
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l--~gR~i 97 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLL--GKRYI 97 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEES--SSCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCee--CCeEE
Confidence 35799999999999999999999999975 689999985 899999999999999999999986 88777 79999
Q ss_pred EEEEeec
Q 043164 522 RVAYAKS 528 (1049)
Q Consensus 522 ~V~~Ak~ 528 (1049)
.|..+..
T Consensus 98 ~V~~a~~ 104 (123)
T 2dha_A 98 ELFRSTA 104 (123)
T ss_dssp CCEEECH
T ss_pred EEEECCH
Confidence 9998755
No 327
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.34 E-value=3.8e-12 Score=119.60 Aligned_cols=81 Identities=12% Similarity=0.222 Sum_probs=73.4
Q ss_pred CCCCceEEEcCCCC-----CCCHHHHHHHHhhcCCeeEEEEeecCCC-CCccceEEEEcCCHHHHHHHHHHhcCCCeeeC
Q 043164 283 VAPSGTIVVKGLSQ-----KTTEEDLYQILAEWGPLRHVRVIKERNS-GVSRGFAFIDFPSVGAARAMMDRIGDDGLVVD 356 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~-----~~tee~L~~~F~~~G~i~~v~i~~dk~t-g~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~ 356 (1049)
..|+++|+|.||.. ..++++|+++|++||.|.+|.|+.++.+ +.++|||||+|.+.++|.+|++.| ||..|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~l--nG~~~~ 82 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDL--NGRYFG 82 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHH--TTCEET
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHH--CCCEEC
Confidence 46789999999963 2378999999999999999999998754 689999999999999999999999 999999
Q ss_pred CeeEEEeec
Q 043164 357 GRKLFFEYS 365 (1049)
Q Consensus 357 Gr~i~V~~A 365 (1049)
|+.|.|.++
T Consensus 83 Gr~i~v~~a 91 (105)
T 2pe8_A 83 GRVVKACFY 91 (105)
T ss_dssp TEECEEEEC
T ss_pred CcEEEEEEc
Confidence 999999997
No 328
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=1.9e-12 Score=117.11 Aligned_cols=75 Identities=21% Similarity=0.408 Sum_probs=66.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEe
Q 043164 284 APSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFE 363 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~ 363 (1049)
.++++|||+|||..+|+++|+++|+.||+|..|.|+.+ ++|||||+|.+.++|.+|+ ...+.+.|+.|.|.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~----~~~~~~~g~~l~v~ 73 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLC----GEDLIIKGISVHIS 73 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTT----TCEEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHh----cCCceeCCEEEEEE
Confidence 46789999999999999999999999999999999875 6899999999999997543 24577799999999
Q ss_pred ecCC
Q 043164 364 YSSK 367 (1049)
Q Consensus 364 ~A~~ 367 (1049)
++..
T Consensus 74 ~a~~ 77 (88)
T 1wf0_A 74 NAEP 77 (88)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 9753
No 329
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.34 E-value=2.6e-12 Score=116.42 Aligned_cols=75 Identities=15% Similarity=0.144 Sum_probs=69.6
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~ 525 (1049)
...+|||+|||..+++++|+++|++| .|..|.|. .++|||||+|.+.++|.+|+..|||..| +|+.|+|.|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~g~~l~V~~ 74 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSF--RGKDLIVQL 74 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEE--TTEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeE--CCcEEEEEE
Confidence 35789999999999999999999999 99999885 4789999999999999999999999999 799999999
Q ss_pred eecC
Q 043164 526 AKSI 529 (1049)
Q Consensus 526 Ak~k 529 (1049)
|...
T Consensus 75 a~~~ 78 (88)
T 1wg1_A 75 QPTD 78 (88)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8665
No 330
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.33 E-value=1.3e-12 Score=124.75 Aligned_cols=72 Identities=17% Similarity=0.273 Sum_probs=65.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCee-----
Q 043164 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRK----- 359 (1049)
Q Consensus 285 ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~----- 359 (1049)
...+|||+|||..+|+++|+++|+.||.|..|.|+.+ |||||+|.+.++|.+||+.| |+..|+|+.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l--~g~~~~gr~~~~~~ 85 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKL--DNTKFRSHEGETAY 85 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHH--TTCBCCCTTSCCCB
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHh--CCCEECCcEeeeEE
Confidence 4589999999999999999999999999999999876 79999999999999999999 999999998
Q ss_pred EEEeec
Q 043164 360 LFFEYS 365 (1049)
Q Consensus 360 i~V~~A 365 (1049)
|+|..+
T Consensus 86 i~v~~~ 91 (115)
T 3beg_B 86 IRVKVD 91 (115)
T ss_dssp CEEEEC
T ss_pred EEeccC
Confidence 555554
No 331
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=2.2e-12 Score=117.10 Aligned_cols=74 Identities=20% Similarity=0.211 Sum_probs=66.0
Q ss_pred Ccce-EEEeCCCccCcHHH----HHHHhhcc-CCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCe
Q 043164 446 PTHV-LVVRGLDEYADEEM----LRYEFSKH-APIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQ 519 (1049)
Q Consensus 446 ps~~-LfV~NLp~~~teed----Lre~Fs~f-G~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr 519 (1049)
|+.+ |||+|||+.+++++ |.++|++| |.|..| ++ |||||.|.+.++|.+|++.|||..| .|+
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l--~gr 74 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDV--FGN 74 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCS--SSS
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCcc--CCc
Confidence 5677 88999999999988 55899999 499888 33 9999999999999999999999999 699
Q ss_pred EEEEEEeecCCC
Q 043164 520 ILRVAYAKSILG 531 (1049)
Q Consensus 520 ~L~V~~Ak~k~~ 531 (1049)
.|+|.||+.+..
T Consensus 75 ~i~v~~A~~~sd 86 (96)
T 2diu_A 75 RIIVSFTPKNRE 86 (96)
T ss_dssp CCEEESSCCSCC
T ss_pred eEEEEecCCCcc
Confidence 999999988743
No 332
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.33 E-value=1.6e-12 Score=130.94 Aligned_cols=79 Identities=20% Similarity=0.492 Sum_probs=75.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEee
Q 043164 285 PSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEY 364 (1049)
Q Consensus 285 ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~ 364 (1049)
+..+|||+|||..+|+++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||+ + ++..|+|+.|.|.+
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~--~~~~~~g~~i~V~~ 162 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-N--KFIDFKDRKIEIKR 162 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-C--SEECSSSSCEEEEE
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-C--CCEEeCCeEEEEee
Confidence 35699999999999999999999999999999999998899999999999999999999997 7 99999999999999
Q ss_pred cC
Q 043164 365 SS 366 (1049)
Q Consensus 365 A~ 366 (1049)
|.
T Consensus 163 a~ 164 (167)
T 2cjk_A 163 AE 164 (167)
T ss_dssp CC
T ss_pred cC
Confidence 73
No 333
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.33 E-value=1.1e-12 Score=127.22 Aligned_cols=78 Identities=26% Similarity=0.212 Sum_probs=70.7
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCee--eEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIK--DLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRV 523 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~--~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V 523 (1049)
...+|||+|||+.+++++|+++|++| .|+ .|.|+.|+. |.++|||||+|.+.++|.+||.. ++..| +|+.|.|
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l--~gR~I~V 115 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERI--GHRYIEV 115 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCB--TTBCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEE--CCEEEEE
Confidence 46789999999999999999999999 677 999999986 99999999999999999999985 77766 8999999
Q ss_pred EEeec
Q 043164 524 AYAKS 528 (1049)
Q Consensus 524 ~~Ak~ 528 (1049)
.++..
T Consensus 116 ~~a~~ 120 (126)
T 2hgm_A 116 FKSSQ 120 (126)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 98754
No 334
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.32 E-value=4.5e-12 Score=123.22 Aligned_cols=73 Identities=21% Similarity=0.307 Sum_probs=67.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccce-EEEEcCCHHHHHHHHHHhcCCCeeeCC--eeEEEe
Q 043164 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGF-AFIDFPSVGAARAMMDRIGDDGLVVDG--RKLFFE 363 (1049)
Q Consensus 287 ~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~-AFVeF~~~e~A~~Al~~l~~ng~~i~G--r~i~V~ 363 (1049)
..|||+||++.+|+++|+++|++||.|.+|.|+.. .+|| |||+|.+.++|..|++.| ||..|.| +.|+|+
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~L--nG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSL--DGQNIYNACCTLRID 101 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHH--TTCEEETTEEEEEEE
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHc--CCCeecCCCcEEEEE
Confidence 47789999999999999999999999999988764 2678 999999999999999999 9999998 999999
Q ss_pred ecC
Q 043164 364 YSS 366 (1049)
Q Consensus 364 ~A~ 366 (1049)
|+.
T Consensus 102 ~ak 104 (130)
T 3zzy_A 102 FSK 104 (130)
T ss_dssp ECS
T ss_pred ecC
Confidence 984
No 335
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.32 E-value=3.7e-12 Score=115.93 Aligned_cols=76 Identities=21% Similarity=0.385 Sum_probs=63.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEE
Q 043164 282 AVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLF 361 (1049)
Q Consensus 282 ~~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~ 361 (1049)
...+..+|||+|||+.+|+++|+++|++||.|.+|.|+.+ ++|||||+|.+.++|.+ |....+.+.|+.|.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVH 77 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEE
Confidence 3467789999999999999999999999999999999875 78999999999999983 31245567799999
Q ss_pred EeecC
Q 043164 362 FEYSS 366 (1049)
Q Consensus 362 V~~A~ 366 (1049)
|.++.
T Consensus 78 v~~a~ 82 (89)
T 3d2w_A 78 ISNAE 82 (89)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 99974
No 336
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.32 E-value=3.8e-13 Score=132.89 Aligned_cols=81 Identities=17% Similarity=0.149 Sum_probs=74.1
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~ 525 (1049)
...+|||+|||+.+++++|+++|++|| |+.|.|+.|+. +.++|||||+|.+.++|.+|| .||+..| +|+.|.|.+
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l--~gR~i~V~~ 119 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANM--QHRYIELFL 119 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSS--SSCCCCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEE--CCEEEEEEE
Confidence 356899999999999999999999999 77999999985 999999999999999999999 7899888 799999999
Q ss_pred eecCCC
Q 043164 526 AKSILG 531 (1049)
Q Consensus 526 Ak~k~~ 531 (1049)
+.....
T Consensus 120 a~~~~~ 125 (139)
T 2hgn_A 120 NSTTGA 125 (139)
T ss_dssp CCCSCC
T ss_pred CCCCCC
Confidence 877643
No 337
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=4.4e-12 Score=114.72 Aligned_cols=78 Identities=22% Similarity=0.231 Sum_probs=69.0
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~ 525 (1049)
++++|||+|||..+++++|+++|++||.|..|.|+++ ++|||||+|.+.++|.+ +++..+.++|+.|.|.+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~----~~~~~~~~~g~~l~v~~ 74 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQS----LCGEDLIIKGISVHISN 74 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHH----TTTCEEEETTEEEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHH----HhcCCceeCCEEEEEEe
Confidence 4689999999999999999999999999999999875 78999999999999864 56666767899999999
Q ss_pred eecCCCC
Q 043164 526 AKSILGP 532 (1049)
Q Consensus 526 Ak~k~~~ 532 (1049)
++++...
T Consensus 75 a~~~~~~ 81 (88)
T 1wf0_A 75 AEPKHNS 81 (88)
T ss_dssp CCCCCCC
T ss_pred cCCCCCC
Confidence 9887543
No 338
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.31 E-value=4.7e-12 Score=127.63 Aligned_cols=75 Identities=19% Similarity=0.240 Sum_probs=68.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCC--eeEEEe
Q 043164 286 SGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDG--RKLFFE 363 (1049)
Q Consensus 286 s~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~G--r~i~V~ 363 (1049)
..+|||+||++.+|+++|+++|++||.|..|.|+... ++|||||+|.+.++|..|++.| ||..|.| +.|+|+
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~L--nG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSL--DGQNIYNACCTLRID 119 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHS--TTBCSSSSCSCEEEE
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHh--CCCEecCCCcEEEEE
Confidence 3578999999999999999999999999999987542 5789999999999999999999 9999965 999999
Q ss_pred ecC
Q 043164 364 YSS 366 (1049)
Q Consensus 364 ~A~ 366 (1049)
|+.
T Consensus 120 ~Ak 122 (164)
T 1sjr_A 120 FSK 122 (164)
T ss_dssp ECS
T ss_pred Eec
Confidence 984
No 339
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=6.6e-12 Score=115.08 Aligned_cols=78 Identities=24% Similarity=0.268 Sum_probs=69.4
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~ 525 (1049)
.+.+|||+|||..+++++|+++|++||.|..| +.++.++. ||||+|.+.++|.+||. |||..| +|+.|.|.+
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~--~g~~l~V~~ 78 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSL--GGHRLRVRP 78 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEE--TTEECCCBC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEE--CCEEEEEEE
Confidence 35799999999999999999999999999987 55555554 99999999999999999 999999 799999999
Q ss_pred eecCCC
Q 043164 526 AKSILG 531 (1049)
Q Consensus 526 Ak~k~~ 531 (1049)
+.++..
T Consensus 79 a~~~~~ 84 (94)
T 2e5g_A 79 REQKEF 84 (94)
T ss_dssp SCCSCC
T ss_pred CCcCCC
Confidence 876543
No 340
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.31 E-value=6e-12 Score=130.19 Aligned_cols=81 Identities=28% Similarity=0.452 Sum_probs=75.7
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~ 525 (1049)
+.++|||+|||..+++++|+++|+.||.|..|.|++++.++.++|||||+|.+.++|.+||.. ++..| +|+.|.|.+
T Consensus 12 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~--~g~~l~v~~ 88 (196)
T 1l3k_A 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKV--DGRVVEPKR 88 (196)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEE--TTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEE--CCEEeeeec
Confidence 578999999999999999999999999999999999999999999999999999999999976 88888 799999999
Q ss_pred eecC
Q 043164 526 AKSI 529 (1049)
Q Consensus 526 Ak~k 529 (1049)
+...
T Consensus 89 ~~~~ 92 (196)
T 1l3k_A 89 AVSR 92 (196)
T ss_dssp CCC-
T ss_pred ccCc
Confidence 8764
No 341
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.30 E-value=8.6e-12 Score=120.53 Aligned_cols=76 Identities=21% Similarity=0.266 Sum_probs=67.1
Q ss_pred eEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeE-EEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEEee
Q 043164 449 VLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGF-AFLHFHSVEDASKALEATNGTTLEKNGQILRVAYAK 527 (1049)
Q Consensus 449 ~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGf-AFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~Ak 527 (1049)
.|||+||+..+++++|.++|++||.|..|.|+.. .|| |||+|.+.++|..|++.|||..|...++.|+|.||+
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 4679999999999999999999999999999752 286 999999999999999999999995222799999998
Q ss_pred cCC
Q 043164 528 SIL 530 (1049)
Q Consensus 528 ~k~ 530 (1049)
++.
T Consensus 101 ~~~ 103 (124)
T 2e5i_A 101 PTR 103 (124)
T ss_dssp CSC
T ss_pred CCc
Confidence 863
No 342
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.30 E-value=5e-12 Score=118.84 Aligned_cols=81 Identities=26% Similarity=0.304 Sum_probs=71.3
Q ss_pred CcceEEEeCCCc--cC--------cHHHHHHHhhccCCeeeEEEeecCCC--CceeeEEEEEeCCHHHHHHHHHHhCCCe
Q 043164 446 PTHVLVVRGLDE--YA--------DEEMLRYEFSKHAPIKDLRLVRDKFT--HVSRGFAFLHFHSVEDASKALEATNGTT 513 (1049)
Q Consensus 446 ps~~LfV~NLp~--~~--------teedLre~Fs~fG~I~~v~I~rD~~t--g~SrGfAFVeF~s~e~A~kAl~~LnG~~ 513 (1049)
|+.+|+|.||-. .+ .+++|+++|++||.|..|.|+++..+ +.++|||||+|.+.++|.+|+..|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 789999999943 33 23789999999999999999998754 3679999999999999999999999999
Q ss_pred eccCCeEEEEEEeec
Q 043164 514 LEKNGQILRVAYAKS 528 (1049)
Q Consensus 514 ~~i~Gr~L~V~~Ak~ 528 (1049)
| +|+.|+|.|+..
T Consensus 84 f--~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 F--ANRVVVTKYCDP 96 (105)
T ss_dssp E--TTEECEEEEECH
T ss_pred e--CCCEEEEEEeCH
Confidence 9 799999999754
No 343
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.30 E-value=7.1e-12 Score=120.24 Aligned_cols=81 Identities=19% Similarity=0.228 Sum_probs=71.9
Q ss_pred CcceEEEeCCCcc-----CcHHHHHHHhhccCCeeeEEEeecCC----CCceeeEEEEEeCCHHHHHHHHHHhCCCeecc
Q 043164 446 PTHVLVVRGLDEY-----ADEEMLRYEFSKHAPIKDLRLVRDKF----THVSRGFAFLHFHSVEDASKALEATNGTTLEK 516 (1049)
Q Consensus 446 ps~~LfV~NLp~~-----~teedLre~Fs~fG~I~~v~I~rD~~----tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i 516 (1049)
|+.+|+|.||... -.+++|+++|++||.|..|.|+++.. ++.++|||||+|.+.++|.+|+..|||..|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f-- 96 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF-- 96 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEE--
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEE--
Confidence 6789999999543 23689999999999999999999864 467899999999999999999999999999
Q ss_pred CCeEEEEEEeec
Q 043164 517 NGQILRVAYAKS 528 (1049)
Q Consensus 517 ~Gr~L~V~~Ak~ 528 (1049)
+|+.|+|.|+..
T Consensus 97 ~GR~i~v~~~~~ 108 (118)
T 3ue2_A 97 AGRKVVAEVYDQ 108 (118)
T ss_dssp TTEECEEEEECH
T ss_pred CCcEEEEEEcCh
Confidence 899999999754
No 344
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.29 E-value=3.5e-12 Score=121.76 Aligned_cols=74 Identities=20% Similarity=0.249 Sum_probs=66.2
Q ss_pred cceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeE-----E
Q 043164 447 THVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQI-----L 521 (1049)
Q Consensus 447 s~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~-----L 521 (1049)
.++|||+|||..+++++|+++|++||.|..|.|+.+ |||||+|.+.++|.+||+.|||..| +|+. |
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~--~gr~~~~~~i 86 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKF--RSHEGETAYI 86 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBC--CCTTSCCCBC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEE--CCcEeeeEEE
Confidence 578999999999999999999999999999999876 8999999999999999999999998 6887 7
Q ss_pred EEEEeecC
Q 043164 522 RVAYAKSI 529 (1049)
Q Consensus 522 ~V~~Ak~k 529 (1049)
+|..+.+.
T Consensus 87 ~v~~~~~~ 94 (115)
T 3beg_B 87 RVKVDGPR 94 (115)
T ss_dssp EEEECC--
T ss_pred EeccCCCC
Confidence 77776654
No 345
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.28 E-value=1.2e-11 Score=119.48 Aligned_cols=72 Identities=22% Similarity=0.343 Sum_probs=65.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccce-EEEEcCCHHHHHHHHHHhcCCCeeeCC--eeEEEe
Q 043164 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGF-AFIDFPSVGAARAMMDRIGDDGLVVDG--RKLFFE 363 (1049)
Q Consensus 287 ~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~-AFVeF~~~e~A~~Al~~l~~ng~~i~G--r~i~V~ 363 (1049)
..|||+||++.+|+++|+++|++||.|.+|.|+. + .|| |||+|.+.++|..|++.| ||..|.| +.|+|.
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~L--nG~~i~g~~~~l~V~ 97 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAAL--NGADIYAGCCTLKIE 97 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHH--TTCCCBTTBSEEEEE
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHh--CCCEecCCCeEEEEE
Confidence 3468999999999999999999999999999965 2 276 999999999999999999 9999988 699999
Q ss_pred ecC
Q 043164 364 YSS 366 (1049)
Q Consensus 364 ~A~ 366 (1049)
||.
T Consensus 98 ~Ak 100 (124)
T 2e5i_A 98 YAR 100 (124)
T ss_dssp CCS
T ss_pred Eec
Confidence 984
No 346
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=6.3e-12 Score=119.66 Aligned_cols=77 Identities=18% Similarity=0.327 Sum_probs=66.7
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCC---CceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFT---HVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILR 522 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~t---g~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~ 522 (1049)
.+++|||+|||..+++++|+++|++||.|. +.++.+..+ |.++|||||+|.+.++|.+||+.|++ + +|+.|.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~--~G~~~~ 81 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--E--DGKLYL 81 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--E--TTEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--c--CCcEEE
Confidence 467899999999999999999999999999 888888777 79999999999999999999999942 3 566666
Q ss_pred EEEee
Q 043164 523 VAYAK 527 (1049)
Q Consensus 523 V~~Ak 527 (1049)
+..+.
T Consensus 82 ~~~~~ 86 (114)
T 2dnl_A 82 CVSSP 86 (114)
T ss_dssp EECCS
T ss_pred eccCC
Confidence 65443
No 347
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.27 E-value=8.4e-12 Score=120.32 Aligned_cols=75 Identities=19% Similarity=0.278 Sum_probs=68.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEE
Q 043164 283 VAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFF 362 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V 362 (1049)
..++++|||+|| .+|+++|+++|+.||.|..|.|+ .++|||||+|.+.++|..||+.| +|..|.|+.|.|
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~l--ng~~~~g~~l~V 105 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAEL--NGTQVESVQLKV 105 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHH--TTCBCSSCBCEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHh--CCCEECCeEEEE
Confidence 356789999996 69999999999999999999986 46889999999999999999999 999999999999
Q ss_pred eecCC
Q 043164 363 EYSSK 367 (1049)
Q Consensus 363 ~~A~~ 367 (1049)
.++..
T Consensus 106 ~~a~~ 110 (121)
T 2bz2_A 106 NIARK 110 (121)
T ss_dssp EECCS
T ss_pred EEeCC
Confidence 99843
No 348
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.27 E-value=7.5e-12 Score=131.84 Aligned_cols=77 Identities=19% Similarity=0.284 Sum_probs=71.8
Q ss_pred CcceEEEeCCC-ccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEE
Q 043164 446 PTHVLVVRGLD-EYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVA 524 (1049)
Q Consensus 446 ps~~LfV~NLp-~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~ 524 (1049)
++++|||+||+ ..+++++|+++|++||.|..|+|+++ .+|||||+|.+.++|.+||+.|||..| .|+.|+|.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~--~g~~l~v~ 75 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFM--FGQKMNVC 75 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEE--CCceEEEE
Confidence 46799999999 79999999999999999999999976 379999999999999999999999999 69999999
Q ss_pred EeecC
Q 043164 525 YAKSI 529 (1049)
Q Consensus 525 ~Ak~k 529 (1049)
|++..
T Consensus 76 ~s~~~ 80 (205)
T 3tyt_A 76 VSKQP 80 (205)
T ss_dssp ECSCS
T ss_pred EccCC
Confidence 98764
No 349
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.27 E-value=1e-11 Score=125.72 Aligned_cols=79 Identities=19% Similarity=0.444 Sum_probs=73.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeC---CeeE
Q 043164 284 APSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVD---GRKL 360 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~---Gr~i 360 (1049)
.+.++|||+|||..+|+++|+++|+.||.|..|.|+.++ +|.++|||||+|.+.++|.+||+.| ||..+. +++|
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l--~g~~~~~g~~~~l 169 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAM--HQAQTMEGCSSPM 169 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHH--TTSCCCTTCSSCC
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHh--cCCcccCCCCCCe
Confidence 356799999999999999999999999999999999985 6999999999999999999999999 887776 4999
Q ss_pred EEeec
Q 043164 361 FFEYS 365 (1049)
Q Consensus 361 ~V~~A 365 (1049)
.|.||
T Consensus 170 ~V~~a 174 (175)
T 3nmr_A 170 VVKFA 174 (175)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 99996
No 350
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=2.5e-11 Score=115.22 Aligned_cols=81 Identities=23% Similarity=0.327 Sum_probs=70.0
Q ss_pred CCCcceEEEeCCCccCc-----------HHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCC
Q 043164 444 TGPTHVLVVRGLDEYAD-----------EEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGT 512 (1049)
Q Consensus 444 ~~ps~~LfV~NLp~~~t-----------eedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~ 512 (1049)
..++++|+|.||....+ +++|+++|++||.|..|.| .++ .++|||||+|.+.++|.+|+..|||.
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 34688999999954432 6899999999999999966 554 37999999999999999999999999
Q ss_pred eeccCCeEEEEEEeecCC
Q 043164 513 TLEKNGQILRVAYAKSIL 530 (1049)
Q Consensus 513 ~~~i~Gr~L~V~~Ak~k~ 530 (1049)
.| +|+.|+|.|+.++.
T Consensus 88 ~~--~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 88 WF--GGRQITAQAWDGTT 103 (112)
T ss_dssp EE--TTEECEEEECCSCC
T ss_pred EE--CCcEEEEEEeCCCC
Confidence 99 79999999998753
No 351
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.24 E-value=1.5e-11 Score=110.58 Aligned_cols=71 Identities=28% Similarity=0.489 Sum_probs=66.1
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhcc----C-------CeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCee
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKH----A-------PIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTL 514 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~f----G-------~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~ 514 (1049)
+..+|||+|||..+++++|+++|++| | .|..+.++++ +|||||+|.+.++|.+|+ .|||..|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 46899999999999999999999999 8 8999999865 689999999999999999 9999999
Q ss_pred ccCCeEEEEEE
Q 043164 515 EKNGQILRVAY 525 (1049)
Q Consensus 515 ~i~Gr~L~V~~ 525 (1049)
+|+.|+|..
T Consensus 78 --~g~~l~V~r 86 (87)
T 2hzc_A 78 --QGQSLKIRR 86 (87)
T ss_dssp --TTEECEEEC
T ss_pred --CCeEEEEeC
Confidence 799999974
No 352
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.23 E-value=1.4e-11 Score=118.70 Aligned_cols=75 Identities=29% Similarity=0.378 Sum_probs=69.0
Q ss_pred CcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEE
Q 043164 446 PTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAY 525 (1049)
Q Consensus 446 ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~ 525 (1049)
++++|||+|| .+++++|+++|++||.|..|.|+ .++|||||+|.+.++|.+||..|||..| +|+.|+|.|
T Consensus 38 ~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~--~g~~l~V~~ 107 (121)
T 2bz2_A 38 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQV--ESVQLKVNI 107 (121)
T ss_dssp CCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBC--SSCBCEEEE
T ss_pred CCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEE--CCeEEEEEE
Confidence 5689999996 69999999999999999999996 3679999999999999999999999988 799999999
Q ss_pred eecCC
Q 043164 526 AKSIL 530 (1049)
Q Consensus 526 Ak~k~ 530 (1049)
|++..
T Consensus 108 a~~~~ 112 (121)
T 2bz2_A 108 ARKQP 112 (121)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 98864
No 353
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.23 E-value=1.1e-11 Score=132.74 Aligned_cols=83 Identities=30% Similarity=0.383 Sum_probs=70.9
Q ss_pred CCcceEEEeCCCccC---------cHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeec
Q 043164 445 GPTHVLVVRGLDEYA---------DEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLE 515 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~---------teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~ 515 (1049)
..+.+|||+||+..+ ++++|+++|++||.|..|.|+. ++|||||+|.+.++|+.|+++|+|..|.
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTLL 205 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCCC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEEe
Confidence 357899999999998 7999999999999999999986 4799999999999999999999999883
Q ss_pred c----------CCeEEEEEEeecCCCCC
Q 043164 516 K----------NGQILRVAYAKSILGPG 533 (1049)
Q Consensus 516 i----------~Gr~L~V~~Ak~k~~~~ 533 (1049)
+ +|+.|.|.||+....|.
T Consensus 206 ~~~~~e~~~~~~gr~L~V~wA~~~pnp~ 233 (240)
T 3u1l_A 206 LPSDKEWDDRREGTGLLVKWANEDPDPA 233 (240)
T ss_dssp CTTSTTGGGGGGSCCCEEEECC------
T ss_pred ccccccccccCCCCEEEEEEccCCCCHH
Confidence 3 69999999998875543
No 354
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.23 E-value=2.1e-11 Score=127.19 Aligned_cols=76 Identities=17% Similarity=0.362 Sum_probs=70.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEeec
Q 043164 286 SGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYS 365 (1049)
Q Consensus 286 s~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~~A 365 (1049)
.++|||+|||..+|+++|+++|+.||+|..|.|+++. +|.++|||||+|.+.++|..||+.+ +..|+|+.|.|.++
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~---~~~~~Gr~l~V~~~ 184 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP---GQKYKETDLLILFK 184 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT---TCEETTEECEEEET
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC---CCeECCEEEEEEEh
Confidence 4799999999999999999999999999999999985 6999999999999999999999765 45999999999985
No 355
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.21 E-value=2.6e-11 Score=123.29 Aligned_cols=76 Identities=29% Similarity=0.496 Sum_probs=70.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEEEe
Q 043164 284 APSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFE 363 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~V~ 363 (1049)
.+..+|||+|||..+|+++|+++|+.||.|..+ ..+|.++|||||+|.+.++|.+||..| ||..|+|+.|.|.
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~i~v~ 169 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEK--QGAEIDGRSVSLY 169 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHH--TEEEETTEEEEEE
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHh--CCCEECCeEEEEE
Confidence 356899999999999999999999999987665 468899999999999999999999999 9999999999999
Q ss_pred ecC
Q 043164 364 YSS 366 (1049)
Q Consensus 364 ~A~ 366 (1049)
|+.
T Consensus 170 ~a~ 172 (175)
T 1fje_B 170 YTG 172 (175)
T ss_dssp ECS
T ss_pred ecC
Confidence 973
No 356
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.20 E-value=4e-11 Score=131.82 Aligned_cols=81 Identities=30% Similarity=0.477 Sum_probs=74.7
Q ss_pred CCcceEEEeCCCccCcHHHHH----HHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeE
Q 043164 445 GPTHVLVVRGLDEYADEEMLR----YEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQI 520 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLr----e~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~ 520 (1049)
.++++|||+|||..+++++|+ ++|++||.|..|.|++ ++.++|||||+|.+.++|.+||..|||..| .|+.
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~ 81 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPF--YDKP 81 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCee--CCcE
Confidence 467899999999999999966 8999999999999986 678999999999999999999999999988 7999
Q ss_pred EEEEEeecCC
Q 043164 521 LRVAYAKSIL 530 (1049)
Q Consensus 521 L~V~~Ak~k~ 530 (1049)
|+|.|++...
T Consensus 82 l~v~~a~~~~ 91 (282)
T 3pgw_A 82 MRIQYAKTDS 91 (282)
T ss_pred EEEEEeccCc
Confidence 9999997754
No 357
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.18 E-value=6.8e-11 Score=112.14 Aligned_cols=78 Identities=19% Similarity=0.318 Sum_probs=68.0
Q ss_pred CCCCceEEEcCCCCCC-----------CHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCC
Q 043164 283 VAPSGTIVVKGLSQKT-----------TEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDD 351 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~~~-----------tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~n 351 (1049)
..++++|+|.||.... ++++|+++|++||.|..|.| .++ .++|||||+|.+.++|.+||..| |
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~l--n 85 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTL--D 85 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHS--T
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHc--C
Confidence 4578999999994433 26899999999999999965 554 37999999999999999999999 9
Q ss_pred CeeeCCeeEEEeecC
Q 043164 352 GLVVDGRKLFFEYSS 366 (1049)
Q Consensus 352 g~~i~Gr~i~V~~A~ 366 (1049)
|..|+|+.|.|.++.
T Consensus 86 g~~~~gr~l~v~~a~ 100 (112)
T 2dit_A 86 GRWFGGRQITAQAWD 100 (112)
T ss_dssp TCEETTEECEEEECC
T ss_pred CCEECCcEEEEEEeC
Confidence 999999999999974
No 358
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.18 E-value=5.2e-11 Score=124.21 Aligned_cols=79 Identities=15% Similarity=0.279 Sum_probs=72.0
Q ss_pred cceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEEe
Q 043164 447 THVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYA 526 (1049)
Q Consensus 447 s~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~A 526 (1049)
.++|||+|||..+++++|+++|++||.|..|.|+++. ++.++|||||+|.+.++|.+|+..++ ..| +|+.|.|.++
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~--~Gr~l~V~~~ 184 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKY--KETDLLILFK 184 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEE--TTEECEEEET
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeE--CCEEEEEEEh
Confidence 4789999999999999999999999999999999986 58899999999999999999998665 466 8999999997
Q ss_pred ecC
Q 043164 527 KSI 529 (1049)
Q Consensus 527 k~k 529 (1049)
+..
T Consensus 185 ~~y 187 (193)
T 2voo_A 185 DDY 187 (193)
T ss_dssp TTC
T ss_pred HHH
Confidence 654
No 359
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.17 E-value=6.8e-11 Score=112.65 Aligned_cols=79 Identities=16% Similarity=0.270 Sum_probs=68.9
Q ss_pred CCCcceEEEeCCCccCc----------HHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCe
Q 043164 444 TGPTHVLVVRGLDEYAD----------EEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTT 513 (1049)
Q Consensus 444 ~~ps~~LfV~NLp~~~t----------eedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~ 513 (1049)
..|+.+|+|.||-.... +++|+++|++||.|..|.|.++. ++|||||+|.+.++|.+|+..|||..
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~ 79 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRW 79 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 35789999999965322 36789999999999999998763 58999999999999999999999999
Q ss_pred eccCCeEEEEEEeec
Q 043164 514 LEKNGQILRVAYAKS 528 (1049)
Q Consensus 514 ~~i~Gr~L~V~~Ak~ 528 (1049)
| +|+.|.|.|+..
T Consensus 80 f--~GR~i~v~~~~~ 92 (114)
T 3s6e_A 80 F--AGKMITAAYVPL 92 (114)
T ss_dssp E--TTEECEEEEECH
T ss_pred E--CCEEEEEEEEcH
Confidence 9 799999999754
No 360
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.17 E-value=3.4e-11 Score=112.94 Aligned_cols=70 Identities=20% Similarity=0.314 Sum_probs=59.9
Q ss_pred CCCccCcHHHHHHH-----------h-hccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEE
Q 043164 454 GLDEYADEEMLRYE-----------F-SKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQIL 521 (1049)
Q Consensus 454 NLp~~~teedLre~-----------F-s~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L 521 (1049)
||+..+++++|+++ | ++||.|..|.|+++. ++.++|||||+|.+.++|.+|+..|||..| +|+.|
T Consensus 22 ~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~--~Gr~i 98 (104)
T 1jmt_A 22 GLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWF--NGQPI 98 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEE--TTEEC
T ss_pred CcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEE--CCEEE
Confidence 44444566655554 4 999999999999986 478999999999999999999999999999 79999
Q ss_pred EEEEe
Q 043164 522 RVAYA 526 (1049)
Q Consensus 522 ~V~~A 526 (1049)
+|.|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99985
No 361
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.16 E-value=6.3e-11 Score=111.30 Aligned_cols=80 Identities=16% Similarity=0.325 Sum_probs=71.3
Q ss_pred CCCceEEEcCC--CCCCC--------HHHHHHHHhhcCCeeEEEEeecCCC--CCccceEEEEcCCHHHHHHHHHHhcCC
Q 043164 284 APSGTIVVKGL--SQKTT--------EEDLYQILAEWGPLRHVRVIKERNS--GVSRGFAFIDFPSVGAARAMMDRIGDD 351 (1049)
Q Consensus 284 ~ps~~L~V~nL--p~~~t--------ee~L~~~F~~~G~i~~v~i~~dk~t--g~srG~AFVeF~~~e~A~~Al~~l~~n 351 (1049)
.|++.|.|.|+ |..+. +++|++.|++||.|.+|.|++++.+ +.++|||||+|.+.++|.+|+..| |
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~l--n 80 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGL--T 80 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHH--T
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHh--C
Confidence 57899999998 33443 4789999999999999999998754 468999999999999999999999 9
Q ss_pred CeeeCCeeEEEeec
Q 043164 352 GLVVDGRKLFFEYS 365 (1049)
Q Consensus 352 g~~i~Gr~i~V~~A 365 (1049)
|..|+|+.|.|.|+
T Consensus 81 G~~f~GR~i~v~~~ 94 (105)
T 3v4m_A 81 GRKFANRVVVTKYC 94 (105)
T ss_dssp TCEETTEECEEEEE
T ss_pred CCEeCCCEEEEEEe
Confidence 99999999999996
No 362
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.16 E-value=4.2e-11 Score=128.40 Aligned_cols=75 Identities=15% Similarity=0.366 Sum_probs=69.9
Q ss_pred CCCceEEEcCCCCCC---------CHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCee
Q 043164 284 APSGTIVVKGLSQKT---------TEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLV 354 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~---------tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~ 354 (1049)
.+.++|||+||+..+ +|++|+++|++||+|.+|.|+.+ +|||||+|.+.++|..|++.| +|..
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am--~g~~ 203 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAM--SNQT 203 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHH--TTCC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHh--CCCE
Confidence 467899999999998 79999999999999999999863 789999999999999999999 9998
Q ss_pred e------------CCeeEEEeecC
Q 043164 355 V------------DGRKLFFEYSS 366 (1049)
Q Consensus 355 i------------~Gr~i~V~~A~ 366 (1049)
| .|+.|.|.||.
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~ 227 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWAN 227 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC
T ss_pred EeccccccccccCCCCEEEEEEcc
Confidence 8 89999999985
No 363
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.15 E-value=4.1e-11 Score=128.06 Aligned_cols=78 Identities=21% Similarity=0.327 Sum_probs=73.1
Q ss_pred CCcceEEEeCCCc-cCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEE
Q 043164 445 GPTHVLVVRGLDE-YADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRV 523 (1049)
Q Consensus 445 ~ps~~LfV~NLp~-~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V 523 (1049)
.++++|||+|||. .+++++|+++|++||.|..|.|++++ +|||||+|.+.++|.+|++.|||..| +|+.|.|
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~--~g~~l~v 104 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKL--HGKPIRI 104 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBC--SSSBCEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeE--CCeEEEE
Confidence 4678999999999 99999999999999999999999875 78999999999999999999999988 7999999
Q ss_pred EEeecC
Q 043164 524 AYAKSI 529 (1049)
Q Consensus 524 ~~Ak~k 529 (1049)
.|++..
T Consensus 105 ~~a~~~ 110 (229)
T 2adc_A 105 TLSKHQ 110 (229)
T ss_dssp ECCSCC
T ss_pred EEecCc
Confidence 999765
No 364
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.12 E-value=1.1e-10 Score=111.92 Aligned_cols=80 Identities=16% Similarity=0.307 Sum_probs=71.6
Q ss_pred CCCceEEEcCCCC--C---CCHHHHHHHHhhcCCeeEEEEeecCC----CCCccceEEEEcCCHHHHHHHHHHhcCCCee
Q 043164 284 APSGTIVVKGLSQ--K---TTEEDLYQILAEWGPLRHVRVIKERN----SGVSRGFAFIDFPSVGAARAMMDRIGDDGLV 354 (1049)
Q Consensus 284 ~ps~~L~V~nLp~--~---~tee~L~~~F~~~G~i~~v~i~~dk~----tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~ 354 (1049)
+|+++|+|.||-. . -.+++|++.|++||.|.+|.|+.++. ++.++|||||+|.+.++|.+|+..| ||..
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~L--nGr~ 95 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQAL--NGRW 95 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHH--TTCE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHH--CCCE
Confidence 4789999999842 2 24789999999999999999999865 4678899999999999999999999 9999
Q ss_pred eCCeeEEEeec
Q 043164 355 VDGRKLFFEYS 365 (1049)
Q Consensus 355 i~Gr~i~V~~A 365 (1049)
|+|+.|.|.|+
T Consensus 96 f~GR~i~v~~~ 106 (118)
T 3ue2_A 96 FAGRKVVAEVY 106 (118)
T ss_dssp ETTEECEEEEE
T ss_pred ECCcEEEEEEc
Confidence 99999999996
No 365
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.11 E-value=1.1e-10 Score=121.26 Aligned_cols=76 Identities=21% Similarity=0.347 Sum_probs=70.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeC-CeeEE
Q 043164 284 APSGTIVVKGLSQKTTEEDLYQILAEWG-PLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVD-GRKLF 361 (1049)
Q Consensus 284 ~ps~~L~V~nLp~~~tee~L~~~F~~~G-~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~-Gr~i~ 361 (1049)
.++.+|||+|||..+|+++|+++|+.|| .|..|.|+.+ .+|||||+|.+.++|.+||..| ||..|+ |+.|.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l--~g~~~~~g~~l~ 190 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDL--HNHDLGENHHLR 190 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHH--TSSCCSSCCSCC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHh--cCCccCCCCeEE
Confidence 4678999999999999999999999999 9999999764 2789999999999999999999 999999 99999
Q ss_pred EeecC
Q 043164 362 FEYSS 366 (1049)
Q Consensus 362 V~~A~ 366 (1049)
|.|+.
T Consensus 191 v~~a~ 195 (198)
T 1qm9_A 191 VSFSK 195 (198)
T ss_dssp EEEEC
T ss_pred EEeec
Confidence 99974
No 366
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.10 E-value=4e-11 Score=112.43 Aligned_cols=72 Identities=14% Similarity=0.276 Sum_probs=63.9
Q ss_pred EcCCCCCCCHHHHHHHH------------hhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCe
Q 043164 291 VKGLSQKTTEEDLYQIL------------AEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGR 358 (1049)
Q Consensus 291 V~nLp~~~tee~L~~~F------------~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr 358 (1049)
+.||+..+++++|++.| ++||.|.+|.|++++ ++.++|||||+|.+.++|.+|+..| ||..|+|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~l--ng~~~~Gr 96 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDL--NNRWFNGQ 96 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHH--TTCEETTE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHH--CCCEECCE
Confidence 55677777787777666 999999999999985 5899999999999999999999999 99999999
Q ss_pred eEEEeec
Q 043164 359 KLFFEYS 365 (1049)
Q Consensus 359 ~i~V~~A 365 (1049)
.|.|.|+
T Consensus 97 ~i~v~~s 103 (104)
T 1jmt_A 97 PIHAELS 103 (104)
T ss_dssp ECCEEEC
T ss_pred EEEEEEc
Confidence 9999985
No 367
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.05 E-value=2.7e-10 Score=124.22 Aligned_cols=82 Identities=27% Similarity=0.470 Sum_probs=73.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeC---Cee
Q 043164 283 VAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVD---GRK 359 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~---Gr~ 359 (1049)
..++.+|||+|||..+|+++|+++|+.||.|..|.|+.+ .+|.++|||||+|.+.++|..||..|+ ++..+. +++
T Consensus 93 a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~-~~~~~~~~~~r~ 170 (261)
T 3sde_A 93 ATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCG-DGAFLLTTTPRP 170 (261)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHH-HSCEESSSSCCB
T ss_pred cccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhc-CCeEEecCCCce
Confidence 346789999999999999999999999999999999999 589999999999999999999999982 344444 999
Q ss_pred EEEeecC
Q 043164 360 LFFEYSS 366 (1049)
Q Consensus 360 i~V~~A~ 366 (1049)
|.|.++.
T Consensus 171 i~v~~~~ 177 (261)
T 3sde_A 171 VIVEPME 177 (261)
T ss_dssp CEEEECC
T ss_pred EEEeecc
Confidence 9999974
No 368
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=1.7e-09 Score=100.56 Aligned_cols=73 Identities=16% Similarity=0.237 Sum_probs=61.5
Q ss_pred ceEEEcCCC-------CCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCee
Q 043164 287 GTIVVKGLS-------QKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRK 359 (1049)
Q Consensus 287 ~~L~V~nLp-------~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~ 359 (1049)
.+|-|.-.. ..+|+++|+++|++||.|..|.|+ +.++|||||+|.+.++|..||+.+ ++ +.|++
T Consensus 11 ~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~--~~--~~g~~ 81 (100)
T 2d9o_A 11 PKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNE--VG--LVDNP 81 (100)
T ss_dssp CEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTC--CB--CSSSB
T ss_pred ceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhc--CC--CCCCe
Confidence 456555543 468999999999999999999998 368999999999999999999875 54 67999
Q ss_pred EEEeecCCC
Q 043164 360 LFFEYSSKP 368 (1049)
Q Consensus 360 i~V~~A~~p 368 (1049)
|.|.|+..+
T Consensus 82 l~V~~a~~~ 90 (100)
T 2d9o_A 82 LKISWLEGQ 90 (100)
T ss_dssp CEEECSSCC
T ss_pred EEEEEccCC
Confidence 999998543
No 369
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.00 E-value=6e-10 Score=125.54 Aligned_cols=79 Identities=20% Similarity=0.321 Sum_probs=67.7
Q ss_pred CCCcceEEEeC--CCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeec-cCCe-
Q 043164 444 TGPTHVLVVRG--LDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLE-KNGQ- 519 (1049)
Q Consensus 444 ~~ps~~LfV~N--Lp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~-i~Gr- 519 (1049)
..|+.+|||+| |+..+++++|+++|++||.|..|.|+. ++|||||+|.+.++|.+||+.|||..+. ..|+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 34789999999 578899999999999999999988764 4799999999999999999999999883 2345
Q ss_pred -EEEEEEeec
Q 043164 520 -ILRVAYAKS 528 (1049)
Q Consensus 520 -~L~V~~Ak~ 528 (1049)
.|.|.|++.
T Consensus 89 ~~ly~~~~~~ 98 (345)
T 3tht_A 89 ITLYLNFVEK 98 (345)
T ss_dssp EECEEEECSS
T ss_pred eEEEEEEeec
Confidence 688888853
No 370
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.99 E-value=5.9e-10 Score=125.60 Aligned_cols=77 Identities=14% Similarity=0.345 Sum_probs=66.9
Q ss_pred cCCCCCceEEEcC--CCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeC--
Q 043164 281 YAVAPSGTIVVKG--LSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVD-- 356 (1049)
Q Consensus 281 ~~~~ps~~L~V~n--Lp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~-- 356 (1049)
....|+.+|||+| |+..+||++|+++|++||.|..|.|.. +||||||+|.+.++|++||+.| ||..+.
T Consensus 13 ~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~l--nG~~~~~~ 84 (345)
T 3tht_A 13 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTL--NGKEVVDD 84 (345)
T ss_dssp CCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHT--TTCEEECT
T ss_pred ecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHh--CCCccccc
Confidence 3467899999999 578999999999999999999988754 4789999999999999999999 998873
Q ss_pred -Ce--eEEEeec
Q 043164 357 -GR--KLFFEYS 365 (1049)
Q Consensus 357 -Gr--~i~V~~A 365 (1049)
|+ +|.|.|+
T Consensus 85 ~g~~~~ly~~~~ 96 (345)
T 3tht_A 85 LGQKITLYLNFV 96 (345)
T ss_dssp TSCEEECEEEEC
T ss_pred cCCceEEEEEEe
Confidence 44 6788885
No 371
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=1.7e-09 Score=100.54 Aligned_cols=76 Identities=20% Similarity=0.194 Sum_probs=64.2
Q ss_pred cceEEEeCCC-------ccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCe
Q 043164 447 THVLVVRGLD-------EYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQ 519 (1049)
Q Consensus 447 s~~LfV~NLp-------~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr 519 (1049)
.++|.|.-.. ..+++++|+++|++||.|..|.|+. .++|||||+|.+.++|..||..+++ + .|+
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~-----~~rGfaFVeF~~~~~A~~Ai~~~~~--~--~g~ 80 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS-----KKPGTAVVEFATVKAAELAVQNEVG--L--VDN 80 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES-----SSSSEEEEEESCHHHHHHHHHTCCB--C--SSS
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc-----CCCCEEEEEECCHHHHHHHHHhcCC--C--CCC
Confidence 4567776654 4589999999999999999999983 5789999999999999999998655 4 589
Q ss_pred EEEEEEeecCCC
Q 043164 520 ILRVAYAKSILG 531 (1049)
Q Consensus 520 ~L~V~~Ak~k~~ 531 (1049)
.|+|.|++++..
T Consensus 81 ~l~V~~a~~~~~ 92 (100)
T 2d9o_A 81 PLKISWLEGQPQ 92 (100)
T ss_dssp BCEEECSSCCCC
T ss_pred eEEEEEccCCCC
Confidence 999999987643
No 372
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.92 E-value=3e-09 Score=101.31 Aligned_cols=77 Identities=18% Similarity=0.321 Sum_probs=66.8
Q ss_pred CCCCceEEEcCCCCCC----------CHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCC
Q 043164 283 VAPSGTIVVKGLSQKT----------TEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDG 352 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~~~----------tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng 352 (1049)
..|++.|.|.||-... .+++|++.|++||.|.+|.|.++. ++|||||+|.+.++|.+|+..| ||
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~l--nG 77 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNAL--HG 77 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHH--TT
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHh--CC
Confidence 4578899999984322 245789999999999999997653 5899999999999999999999 99
Q ss_pred eeeCCeeEEEeec
Q 043164 353 LVVDGRKLFFEYS 365 (1049)
Q Consensus 353 ~~i~Gr~i~V~~A 365 (1049)
..|+|+.|.|.|+
T Consensus 78 ~~f~GR~i~v~~~ 90 (114)
T 3s6e_A 78 RWFAGKMITAAYV 90 (114)
T ss_dssp CEETTEECEEEEE
T ss_pred CEECCEEEEEEEE
Confidence 9999999999996
No 373
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.75 E-value=1.6e-08 Score=96.65 Aligned_cols=78 Identities=14% Similarity=0.203 Sum_probs=71.6
Q ss_pred CCCCCceEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCC-HHHHHHHHHHhcCCCeeeCCee
Q 043164 282 AVAPSGTIVVKGLSQK-TTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPS-VGAARAMMDRIGDDGLVVDGRK 359 (1049)
Q Consensus 282 ~~~ps~~L~V~nLp~~-~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~-~e~A~~Al~~l~~ng~~i~Gr~ 359 (1049)
.-.++..|||+||+.. +++++|+++|+.||+|..|.++.+.. .|||.|.+ ..+|..|+..|+.+++.|.|..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 4467899999999999 99999999999999999999999865 69999999 8999999999988899999999
Q ss_pred EEEeec
Q 043164 360 LFFEYS 365 (1049)
Q Consensus 360 i~V~~A 365 (1049)
++++..
T Consensus 88 ~~~evL 93 (121)
T 1owx_A 88 VTWEVL 93 (121)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 998774
No 374
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.55 E-value=2.5e-07 Score=83.30 Aligned_cols=74 Identities=19% Similarity=0.218 Sum_probs=61.6
Q ss_pred CcceEEEeCCCc----cCcH----HHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccC
Q 043164 446 PTHVLVVRGLDE----YADE----EMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKN 517 (1049)
Q Consensus 446 ps~~LfV~NLp~----~~te----edLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~ 517 (1049)
|..+|+|.-++. ..-. .+|.+.|++||.|..++|+.|+ +||+|.+.+.|.+||+ |||..+ +
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v--~ 74 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKEL--L 74 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEE--T
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEe--C
Confidence 456788876652 2222 5689999999999999999873 8999999999999999 999998 8
Q ss_pred CeEEEEEEeecCC
Q 043164 518 GQILRVAYAKSIL 530 (1049)
Q Consensus 518 Gr~L~V~~Ak~k~ 530 (1049)
|+.|+|.++.+.-
T Consensus 75 Gr~LkV~lkt~dW 87 (91)
T 2dnr_A 75 NRTITIALKSPSG 87 (91)
T ss_dssp TEEEEEEECCCSS
T ss_pred CeEEEEEeCCCCc
Confidence 9999999988753
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.55 E-value=1.8e-07 Score=89.45 Aligned_cols=76 Identities=20% Similarity=0.159 Sum_probs=66.5
Q ss_pred CCcceEEEeCCCcc-CcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCC-HHHHHHHHHHhCCCeeccCCeEEE
Q 043164 445 GPTHVLVVRGLDEY-ADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHS-VEDASKALEATNGTTLEKNGQILR 522 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~-~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s-~e~A~kAl~~LnG~~~~i~Gr~L~ 522 (1049)
.+...|+|+||+.. ++.++|+++|++||.|..|.|+++.. .|||.|.+ ..+|..|+..|+.-.+.|+|..++
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 35679999999999 99999999999999999999998864 69999999 899999999997555555888888
Q ss_pred EEEe
Q 043164 523 VAYA 526 (1049)
Q Consensus 523 V~~A 526 (1049)
+...
T Consensus 90 ~evL 93 (121)
T 1owx_A 90 WEVL 93 (121)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 8764
No 376
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.53 E-value=1.6e-07 Score=84.53 Aligned_cols=72 Identities=18% Similarity=0.329 Sum_probs=62.5
Q ss_pred CCCCceEEEcCCCC----CCCH----HHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCee
Q 043164 283 VAPSGTIVVKGLSQ----KTTE----EDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLV 354 (1049)
Q Consensus 283 ~~ps~~L~V~nLp~----~~te----e~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~ 354 (1049)
.+|..||+|.-++. .... .+|.+.|..||.|..|+|+.+ .+||+|.+.++|.+||+ | ||..
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d--------~~fVtF~d~~sAlaAi~-m--nG~~ 72 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED--------KMWVTFLEGSSALNVLS-L--NGKE 72 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS--------SEEEEESSHHHHHHGGG-G--TTCE
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC--------CEEEEECChHHHHHHHh-c--CCeE
Confidence 46778999988772 3333 568899999999999999987 48999999999999997 8 9999
Q ss_pred eCCeeEEEeec
Q 043164 355 VDGRKLFFEYS 365 (1049)
Q Consensus 355 i~Gr~i~V~~A 365 (1049)
|+|+.|+|+++
T Consensus 73 v~Gr~LkV~lk 83 (91)
T 2dnr_A 73 LLNRTITIALK 83 (91)
T ss_dssp ETTEEEEEEEC
T ss_pred eCCeEEEEEeC
Confidence 99999999995
No 377
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.51 E-value=2.3e-07 Score=98.40 Aligned_cols=80 Identities=19% Similarity=0.227 Sum_probs=67.6
Q ss_pred cceEEEeCCCcc-----CcHHHHHHHhhccCCeeeEEEeecC----CCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccC
Q 043164 447 THVLVVRGLDEY-----ADEEMLRYEFSKHAPIKDLRLVRDK----FTHVSRGFAFLHFHSVEDASKALEATNGTTLEKN 517 (1049)
Q Consensus 447 s~~LfV~NLp~~-----~teedLre~Fs~fG~I~~v~I~rD~----~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~ 517 (1049)
+.+|.+.|+... -.+++|.+.|++||.|..|.|+++. .++.++|++||+|.+.++|.+|+..|||+.| +
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~--~ 201 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF--A 201 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBS--S
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceE--C
Confidence 456777777432 3567899999999999999999654 3458999999999999999999999999999 7
Q ss_pred CeEEEEEEeec
Q 043164 518 GQILRVAYAKS 528 (1049)
Q Consensus 518 Gr~L~V~~Ak~ 528 (1049)
||.|.|.|...
T Consensus 202 gr~i~~~~~~~ 212 (222)
T 3dxb_A 202 GRKVVAEVYDQ 212 (222)
T ss_dssp SSBCEEEECCH
T ss_pred CeEEEEEEcCH
Confidence 99999999643
No 378
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.34 E-value=5.2e-07 Score=81.64 Aligned_cols=72 Identities=25% Similarity=0.385 Sum_probs=62.7
Q ss_pred CCCCCceEEEcCCCCC-----CCH----HHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCC
Q 043164 282 AVAPSGTIVVKGLSQK-----TTE----EDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDG 352 (1049)
Q Consensus 282 ~~~ps~~L~V~nLp~~-----~te----e~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng 352 (1049)
..+|..||+|.-++.. +.. .+|.+.|..||.|..|+|+.|+ +||+|.+.++|.+||+ | ||
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-l--dG 79 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-V--DG 79 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-G--GG
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-c--CC
Confidence 4578899999988743 222 4588899999999999999984 9999999999999998 8 99
Q ss_pred eeeCCeeEEEee
Q 043164 353 LVVDGRKLFFEY 364 (1049)
Q Consensus 353 ~~i~Gr~i~V~~ 364 (1049)
..|+|+.|+|.+
T Consensus 80 ~~v~Gr~L~V~~ 91 (95)
T 1ufw_A 80 MKVKGRAVKISG 91 (95)
T ss_dssp SEETTEEEEEEC
T ss_pred eeeCCeEEEEec
Confidence 999999999987
No 379
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.29 E-value=1.6e-06 Score=78.53 Aligned_cols=70 Identities=14% Similarity=0.195 Sum_probs=59.6
Q ss_pred CcceEEEeCCCcc-----CcH----HHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeecc
Q 043164 446 PTHVLVVRGLDEY-----ADE----EMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEK 516 (1049)
Q Consensus 446 ps~~LfV~NLp~~-----~te----edLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i 516 (1049)
|-.+|+|.-++.. .-. .+|.+.|++||.|..++|+.|+ +||+|.+.+.|.+||+ |||..+
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v-- 82 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKV-- 82 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEE--
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeee--
Confidence 5678999877632 211 4588999999999999999873 9999999999999998 999999
Q ss_pred CCeEEEEEEe
Q 043164 517 NGQILRVAYA 526 (1049)
Q Consensus 517 ~Gr~L~V~~A 526 (1049)
+|+.|+|.+-
T Consensus 83 ~Gr~L~V~~k 92 (95)
T 1ufw_A 83 KGRAVKISGP 92 (95)
T ss_dssp TTEEEEEECC
T ss_pred CCeEEEEecc
Confidence 7999999974
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.28 E-value=1.1e-06 Score=93.23 Aligned_cols=79 Identities=16% Similarity=0.312 Sum_probs=65.9
Q ss_pred CCceEEEcCCC-----CCCCHHHHHHHHhhcCCeeEEEEeecCC----CCCccceEEEEcCCHHHHHHHHHHhcCCCeee
Q 043164 285 PSGTIVVKGLS-----QKTTEEDLYQILAEWGPLRHVRVIKERN----SGVSRGFAFIDFPSVGAARAMMDRIGDDGLVV 355 (1049)
Q Consensus 285 ps~~L~V~nLp-----~~~tee~L~~~F~~~G~i~~v~i~~dk~----tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i 355 (1049)
.+..|.+.|+- ..-.+++|.+.|++||.|.+|.|+.+.. ++.++|++||+|.+.++|.+|+..| ||..+
T Consensus 123 ~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l--~gr~~ 200 (222)
T 3dxb_A 123 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQAL--NGRWF 200 (222)
T ss_dssp BCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHH--TTCBS
T ss_pred ccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHh--cCceE
Confidence 34455555542 2235678999999999999999986543 4589999999999999999999999 99999
Q ss_pred CCeeEEEeec
Q 043164 356 DGRKLFFEYS 365 (1049)
Q Consensus 356 ~Gr~i~V~~A 365 (1049)
+||.|.|.|+
T Consensus 201 ~gr~i~~~~~ 210 (222)
T 3dxb_A 201 AGRKVVAEVY 210 (222)
T ss_dssp SSSBCEEEEC
T ss_pred CCeEEEEEEc
Confidence 9999999996
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.99 E-value=2.1e-05 Score=72.55 Aligned_cols=72 Identities=19% Similarity=0.291 Sum_probs=66.8
Q ss_pred cceEEEeCCCccCcHHHHHHHhhcc-----CCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEE
Q 043164 447 THVLVVRGLDEYADEEMLRYEFSKH-----APIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQIL 521 (1049)
Q Consensus 447 s~~LfV~NLp~~~teedLre~Fs~f-----G~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L 521 (1049)
..+|-|-|||..++...|+.+++++ |.|+.|.|..|. |-|+|+|.+...|.+|.-+|+|..| +|+.|
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef--~gr~L 92 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQF--QGKVI 92 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEE--TTEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeee--cCeEE
Confidence 3689999999999999999999999 999999999885 5899999999999999999999999 69999
Q ss_pred EEEEe
Q 043164 522 RVAYA 526 (1049)
Q Consensus 522 ~V~~A 526 (1049)
++.-.
T Consensus 93 r~gTv 97 (117)
T 2l9w_A 93 RSGTI 97 (117)
T ss_dssp EEECH
T ss_pred EecCH
Confidence 99753
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.85 E-value=7e-05 Score=69.11 Aligned_cols=72 Identities=22% Similarity=0.200 Sum_probs=66.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhc-----CCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCee
Q 043164 285 PSGTIVVKGLSQKTTEEDLYQILAEW-----GPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRK 359 (1049)
Q Consensus 285 ps~~L~V~nLp~~~tee~L~~~F~~~-----G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~ 359 (1049)
..++|-|-|||..++...|+.|++++ |.|+.|.|..|.. =|+|+|.+...|-+|.-+| +|..|.|++
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~------GAivef~d~~~AgKasLaL--~G~ef~gr~ 91 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN------GAIIIFRDSKFAAKMLMIL--NGSQFQGKV 91 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT------EEEEECSCHHHHHHHHHHH--SSEEETTEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC------ceEEEEccchhhHHHHhhc--CCeeecCeE
Confidence 36899999999999999999999999 9999999999853 6999999999999999999 999999999
Q ss_pred EEEee
Q 043164 360 LFFEY 364 (1049)
Q Consensus 360 i~V~~ 364 (1049)
|+|.-
T Consensus 92 Lr~gT 96 (117)
T 2l9w_A 92 IRSGT 96 (117)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 99864
No 383
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.95 E-value=0.0015 Score=60.22 Aligned_cols=74 Identities=11% Similarity=0.115 Sum_probs=63.4
Q ss_pred ceEEEeCCCccC-c----HHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEE
Q 043164 448 HVLVVRGLDEYA-D----EEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILR 522 (1049)
Q Consensus 448 ~~LfV~NLp~~~-t----eedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~ 522 (1049)
++|+|.||+..+ . .+.++.+|..|+++......+. -.-+.|.|.++++|.+|...|++..| .|+.|+
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f--~g~~~r 77 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEF--LGKEMK 77 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEE--TTEECE
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhcccee--cCceeE
Confidence 589999998865 2 2578999999999988888764 23678999999999999999999999 799999
Q ss_pred EEEeecC
Q 043164 523 VAYAKSI 529 (1049)
Q Consensus 523 V~~Ak~k 529 (1049)
|-|+.+.
T Consensus 78 ~YFgq~~ 84 (104)
T 1wey_A 78 LYFAQTL 84 (104)
T ss_dssp EECCCCS
T ss_pred EEecCCC
Confidence 9998853
No 384
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.49 E-value=0.0051 Score=56.62 Aligned_cols=73 Identities=10% Similarity=0.110 Sum_probs=63.1
Q ss_pred CceEEEcCCCCCC-C----HHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeE
Q 043164 286 SGTIVVKGLSQKT-T----EEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKL 360 (1049)
Q Consensus 286 s~~L~V~nLp~~~-t----ee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i 360 (1049)
.++|+|.||+..+ . .+.++++|..|+++......+.-. -..|.|.+.++|.+|-..| ++..|.|+.|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR------Rirv~F~~~~~A~~AR~~L--h~~~f~g~~~ 76 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK------RVRINFSNPLSAADARLRL--HKTEFLGKEM 76 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT------EEEEECSSTTHHHHHHHTS--TTSEETTEEC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce------EEEEEeCChHHHHHHHHHh--ccceecCcee
Confidence 4689999999876 2 257789999999998888887532 6799999999999999999 9999999999
Q ss_pred EEeecC
Q 043164 361 FFEYSS 366 (1049)
Q Consensus 361 ~V~~A~ 366 (1049)
+|-|+.
T Consensus 77 r~YFgq 82 (104)
T 1wey_A 77 KLYFAQ 82 (104)
T ss_dssp EEECCC
T ss_pred EEEecC
Confidence 999974
No 385
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.29 E-value=0.013 Score=52.85 Aligned_cols=68 Identities=15% Similarity=0.166 Sum_probs=58.0
Q ss_pred ceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCc--eeeEEEEEeCCHHHHHHHHHHhCCCeec
Q 043164 448 HVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHV--SRGFAFLHFHSVEDASKALEATNGTTLE 515 (1049)
Q Consensus 448 ~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~--SrGfAFVeF~s~e~A~kAl~~LnG~~~~ 515 (1049)
.+|+|++||+.+||+++.+.++.+..+.....+..+.+.. .-.-|||.|.+.+++....+.++|..|.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 4799999999999999999999999888777776653322 3467999999999999999999999885
No 386
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.22 E-value=0.012 Score=53.18 Aligned_cols=68 Identities=22% Similarity=0.243 Sum_probs=54.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCC--ccceEEEEcCCHHHHHHHHHHhcCCCeeeC
Q 043164 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGV--SRGFAFIDFPSVGAARAMMDRIGDDGLVVD 356 (1049)
Q Consensus 287 ~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~--srG~AFVeF~~~e~A~~Al~~l~~ng~~i~ 356 (1049)
.+|.|++||+.+||+++.+.+.....+.....+..+.+.. .-.-|||.|.+.+++....+.+ +|..+-
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~--~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRF--DGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHH--TTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHh--CCcEEE
Confidence 4799999999999999999999988776666655443322 2246999999999999999999 777663
No 387
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=95.90 E-value=0.032 Score=50.57 Aligned_cols=57 Identities=23% Similarity=0.265 Sum_probs=48.9
Q ss_pred CCcceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhC
Q 043164 445 GPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATN 510 (1049)
Q Consensus 445 ~ps~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~Ln 510 (1049)
.-.++|+| ++|..+...||.++|+.||.| .|.-+-|. -|||.|.+++.|..|+..+.
T Consensus 14 ~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 14 KRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 34678888 999999999999999999955 56666663 89999999999999999874
No 388
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.62 E-value=0.037 Score=50.72 Aligned_cols=69 Identities=16% Similarity=0.216 Sum_probs=58.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhc-----CCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCee
Q 043164 285 PSGTIVVKGLSQKTTEEDLYQILAEW-----GPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRK 359 (1049)
Q Consensus 285 ps~~L~V~nLp~~~tee~L~~~F~~~-----G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~ 359 (1049)
-..+|.|.|||+.+.++.|.-.|+.- |+|..|.... +-|+|+|.+.+.|++.|+. ....|.+..
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k---~~H~L~~~~ 75 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ---ADHELHGAQ 75 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC---SCCBSSSSB
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC---CcceecCeE
Confidence 45799999999999999999999872 6899998855 2799999999999999964 478899999
Q ss_pred EEEee
Q 043164 360 LFFEY 364 (1049)
Q Consensus 360 i~V~~ 364 (1049)
|.|.-
T Consensus 76 LsV~P 80 (104)
T 2dhx_A 76 LSLRP 80 (104)
T ss_dssp CEEEE
T ss_pred EEEEc
Confidence 99865
No 389
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=95.08 E-value=0.015 Score=42.32 Aligned_cols=30 Identities=40% Similarity=0.926 Sum_probs=27.1
Q ss_pred CCCccccccccccccccccccccccCCCCC
Q 043164 393 IPCDWMCTICGCVNFARRTSCFQCNEARTD 422 (1049)
Q Consensus 393 ~p~dw~~~~~~~~n~~~r~~~~~~~~~~~~ 422 (1049)
.+.||+|+.|+..||+.+..|++|..|++.
T Consensus 3 ~~gDW~C~~C~~~Nfa~R~~C~~C~~pk~~ 32 (33)
T 2k1p_A 3 SANDWQCKTCSNVNWARRSECNMCNTPKYA 32 (33)
T ss_dssp SSSSCBCSSSCCBCCTTCSBCSSSCCBTTC
T ss_pred CCCCcccCCCCCccccccccccccCCcCCC
Confidence 468999999999999999999999988753
No 390
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.04 E-value=0.041 Score=50.07 Aligned_cols=78 Identities=21% Similarity=0.207 Sum_probs=54.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCC--CccceEEEEcCCHHHHHHHHHHhcCCCeeeCC-----e
Q 043164 286 SGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSG--VSRGFAFIDFPSVGAARAMMDRIGDDGLVVDG-----R 358 (1049)
Q Consensus 286 s~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg--~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~G-----r 358 (1049)
+-+|.|+.||+.+||+++.+.+..+-.+.....+..+.+. ..-.-|||.|.+.++.....+.+ +|..+-+ -
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f--~g~~F~D~kg~~~ 86 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRF--DGYIFLDSKGLEY 86 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHS--TTEEEECTTCCEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHc--CCcEEEeCCCCEe
Confidence 5689999999999999988887765444333333222221 11235999999999999999998 8877632 2
Q ss_pred eEEEeec
Q 043164 359 KLFFEYS 365 (1049)
Q Consensus 359 ~i~V~~A 365 (1049)
+..|+||
T Consensus 87 ~a~VE~A 93 (97)
T 2l08_A 87 PAVVEFA 93 (97)
T ss_dssp EEEEEEC
T ss_pred eeEEEec
Confidence 4556775
No 391
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.03 E-value=0.1 Score=49.35 Aligned_cols=72 Identities=15% Similarity=0.246 Sum_probs=57.6
Q ss_pred cceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEEe
Q 043164 447 THVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYA 526 (1049)
Q Consensus 447 s~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~A 526 (1049)
...|.|-+.|+.. ...|...|++||.|....... ...+..|.|.+..+|++||. .||..|. ++-.|-|..+
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~-kNG~ii~-g~~mIGV~p~ 94 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALS-KDGRIFG-ESIMIGVKPC 94 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHT-TTTCEET-TTEECEEEEC
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHH-hCCeEec-CCEEEEEEEC
Confidence 4688888998885 467888999999999887632 23499999999999999998 4999883 3577778775
Q ss_pred e
Q 043164 527 K 527 (1049)
Q Consensus 527 k 527 (1049)
.
T Consensus 95 ~ 95 (119)
T 1wwh_A 95 I 95 (119)
T ss_dssp C
T ss_pred C
Confidence 4
No 392
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=94.86 E-value=0.042 Score=50.01 Aligned_cols=69 Identities=14% Similarity=0.198 Sum_probs=53.9
Q ss_pred cceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCc--eeeEEEEEeCCHHHHHHHHHHhCCCeec
Q 043164 447 THVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHV--SRGFAFLHFHSVEDASKALEATNGTTLE 515 (1049)
Q Consensus 447 s~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~--SrGfAFVeF~s~e~A~kAl~~LnG~~~~ 515 (1049)
+-+|+|+.||+.+||+++.+.++.+-.+.....+..+.+.. .-.-|||.|.+.++...-.+.++|..|.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 45899999999999999988888776655555444432221 2357899999999999999999998885
No 393
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=94.84 E-value=0.0098 Score=42.95 Aligned_cols=29 Identities=38% Similarity=0.962 Sum_probs=26.6
Q ss_pred CCccccccccccccccccccccccCCCCC
Q 043164 394 PCDWMCTICGCVNFARRTSCFQCNEARTD 422 (1049)
Q Consensus 394 p~dw~~~~~~~~n~~~r~~~~~~~~~~~~ 422 (1049)
+.||+|..|+..||+.+..|++|..++++
T Consensus 3 ~gDW~C~~C~~~Nfa~r~~C~~C~~pr~~ 31 (32)
T 2lk0_A 3 FEDWLCNKCCLNNFRKRLKCFRCGADKFD 31 (32)
T ss_dssp CSEEECTTTCCEEETTCCBCTTTCCBTTC
T ss_pred CCCCCcCcCcCCcChhcceecCCCCcCCC
Confidence 58999999999999999999999988754
No 394
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=94.36 E-value=0.048 Score=49.60 Aligned_cols=55 Identities=24% Similarity=0.286 Sum_probs=47.5
Q ss_pred cceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhC
Q 043164 447 THVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATN 510 (1049)
Q Consensus 447 s~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~Ln 510 (1049)
.++|+| ++|..+...||.++|+.||.| .|.-+-|. -|||.|.+++.|..|+..+.
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 467888 999999999999999999944 56666663 89999999999999999875
No 395
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=94.34 E-value=0.072 Score=48.30 Aligned_cols=53 Identities=17% Similarity=0.386 Sum_probs=44.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHh
Q 043164 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRI 348 (1049)
Q Consensus 287 ~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l 348 (1049)
..++| ++|+.+...||.++|+.||.| .|.-+-|. -|||.|.+++.|..||..+
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 45666 999999999999999999954 45556563 7999999999999999876
No 396
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=94.20 E-value=0.12 Score=48.70 Aligned_cols=70 Identities=16% Similarity=0.214 Sum_probs=56.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCC-eeEEEee
Q 043164 286 SGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDG-RKLFFEY 364 (1049)
Q Consensus 286 s~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~G-r~i~V~~ 364 (1049)
...|.|-+.|+.. ...|...|+.||.|.+...... ..+-.|.|.+..+|.+||.. ||..|.| -.|-|..
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~------~NWihI~Y~s~~~A~rAL~k---NG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT------GNWMHIRYQSKLQARKALSK---DGRIFGESIMIGVKP 93 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSS------SSEEEEEESSHHHHHHHHTT---TTCEETTTEECEEEE
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCC------CCeEEEEeCCHHHHHHHHHh---CCeEecCCEEEEEEE
Confidence 4689999999985 6678889999999988876222 23999999999999999965 9999985 5566665
Q ss_pred c
Q 043164 365 S 365 (1049)
Q Consensus 365 A 365 (1049)
+
T Consensus 94 ~ 94 (119)
T 1wwh_A 94 C 94 (119)
T ss_dssp C
T ss_pred C
Confidence 4
No 397
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.72 E-value=0.15 Score=46.73 Aligned_cols=68 Identities=24% Similarity=0.336 Sum_probs=53.3
Q ss_pred cceEEEeCCCccCcHHHHHHHhhcc-----CCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEE
Q 043164 447 THVLVVRGLDEYADEEMLRYEFSKH-----APIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQIL 521 (1049)
Q Consensus 447 s~~LfV~NLp~~~teedLre~Fs~f-----G~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L 521 (1049)
..+|.|.|||+.+.++.|.-+|+.- |.|..|.... +-|+|+|.+...|++.|+.- -..| ++..|
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~-~H~L--~~~~L 76 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQA-DHEL--HGAQL 76 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCS-CCBS--SSSBC
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCC-ccee--cCeEE
Confidence 4689999999999999999999872 5788888764 47899999999998887641 2233 56777
Q ss_pred EEEE
Q 043164 522 RVAY 525 (1049)
Q Consensus 522 ~V~~ 525 (1049)
.|.-
T Consensus 77 sV~P 80 (104)
T 2dhx_A 77 SLRP 80 (104)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 7754
No 398
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=93.52 E-value=0.078 Score=48.20 Aligned_cols=53 Identities=17% Similarity=0.347 Sum_probs=45.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHh
Q 043164 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRI 348 (1049)
Q Consensus 287 ~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l 348 (1049)
..++| ++|+.+...||.++|+.|| -..|.-+-|. -|||.|.+++.|..||..+
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i 59 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTS 59 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 34666 9999999999999999999 3456666663 7999999999999999876
No 399
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=93.51 E-value=0.072 Score=41.51 Aligned_cols=33 Identities=48% Similarity=1.002 Sum_probs=28.8
Q ss_pred CCCCCccccc--cccccccccccccccccCCCCCC
Q 043164 391 STIPCDWMCT--ICGCVNFARRTSCFQCNEARTDD 423 (1049)
Q Consensus 391 ~~~p~dw~~~--~~~~~n~~~r~~~~~~~~~~~~~ 423 (1049)
...+.||+|. .|+..||+.+..|++|..++++.
T Consensus 9 ~~~~GDW~C~~~~C~~~Nfa~R~~C~~C~~pr~~~ 43 (45)
T 1n0z_A 9 RVSDGDWICPDKKCGNVNFARRTSCDRCGREKTTG 43 (45)
T ss_dssp SSCSSSCBCSSTTTCCBCCSSCSBCSSSCCBCCCC
T ss_pred CCCCCCcCCCCCCCCCEEccccccccccCCcCCCC
Confidence 3457899999 89999999999999999988653
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=89.83 E-value=0.66 Score=44.41 Aligned_cols=77 Identities=19% Similarity=0.273 Sum_probs=55.0
Q ss_pred ceEEEeCCCccCcHHHHHHHhhccCCeee-EEEeecCC------------CC-ceeeEEEEEeCCHHHHHHHHHHhCCCe
Q 043164 448 HVLVVRGLDEYADEEMLRYEFSKHAPIKD-LRLVRDKF------------TH-VSRGFAFLHFHSVEDASKALEATNGTT 513 (1049)
Q Consensus 448 ~~LfV~NLp~~~teedLre~Fs~fG~I~~-v~I~rD~~------------tg-~SrGfAFVeF~s~e~A~kAl~~LnG~~ 513 (1049)
..|.|-+.|+... ..|.+.|++||.|.+ +.+.++.. .. ....+..|+|.+..+|.+||. .||..
T Consensus 8 ~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 4677778876655 457788999999876 32221100 00 134688999999999999997 59998
Q ss_pred eccCCeEEEEEEeec
Q 043164 514 LEKNGQILRVAYAKS 528 (1049)
Q Consensus 514 ~~i~Gr~L~V~~Ak~ 528 (1049)
| +|..|-|....+
T Consensus 86 i--~G~mIGV~Py~~ 98 (132)
T 3p3d_A 86 F--NGVLLGVIPYTK 98 (132)
T ss_dssp E--TTEECEEEECCH
T ss_pred e--CcEEEEEEECCH
Confidence 8 788888887654
No 401
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=87.11 E-value=0.28 Score=57.05 Aligned_cols=55 Identities=16% Similarity=0.392 Sum_probs=41.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHH
Q 043164 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDR 347 (1049)
Q Consensus 287 ~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~ 347 (1049)
+.|+|. .|..+++.+|.+.|+.||+|.++.+..++ | -||.|||.+.+++..++..
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHHSS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHhc
Confidence 689997 79999999999999999999999887653 3 3999999999999877643
No 402
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=85.76 E-value=0.98 Score=43.22 Aligned_cols=76 Identities=16% Similarity=0.216 Sum_probs=54.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCeeE-EEEeecC------------CCC-CccceEEEEcCCHHHHHHHHHHhcCC
Q 043164 286 SGTIVVKGLSQKTTEEDLYQILAEWGPLRH-VRVIKER------------NSG-VSRGFAFIDFPSVGAARAMMDRIGDD 351 (1049)
Q Consensus 286 s~~L~V~nLp~~~tee~L~~~F~~~G~i~~-v~i~~dk------------~tg-~srG~AFVeF~~~e~A~~Al~~l~~n 351 (1049)
...|.|-+.|+..+ ..|.+.|++||.|.+ +.+.... ... ....+..|.|.+..+|.+||.. |
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~---N 82 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE---N 82 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT---T
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh---C
Confidence 35688888876654 456678999999855 3332100 000 1234789999999999999965 9
Q ss_pred CeeeCCeeEEEeec
Q 043164 352 GLVVDGRKLFFEYS 365 (1049)
Q Consensus 352 g~~i~Gr~i~V~~A 365 (1049)
|..|+|..|-|..+
T Consensus 83 G~ii~G~mIGV~Py 96 (132)
T 3p3d_A 83 GAVFNGVLLGVIPY 96 (132)
T ss_dssp TCEETTEECEEEEC
T ss_pred CeEeCcEEEEEEEC
Confidence 99999998888775
No 403
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=84.92 E-value=0.53 Score=54.74 Aligned_cols=56 Identities=14% Similarity=0.181 Sum_probs=41.6
Q ss_pred cceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHH
Q 043164 447 THVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEA 508 (1049)
Q Consensus 447 s~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~ 508 (1049)
.+.|+|. .+..+++.+|.++|++||+|..+..-+++ .-||.|+|.+.+.+..++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhc
Confidence 3689997 78889999999999999999999888764 25999999999888766543
No 404
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=62.61 E-value=14 Score=43.64 Aligned_cols=53 Identities=17% Similarity=0.360 Sum_probs=44.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHh
Q 043164 287 GTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRI 348 (1049)
Q Consensus 287 ~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l 348 (1049)
..++|+ +|..+...+|.++|+.||. ..|..+.+. .|||.|.+.+.|..++..+
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widdt-------~a~V~~~~~~~a~~~l~~~ 493 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNTS 493 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSSS-------EEEEECSCHHHHHHHHHHH
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcCC-------eEEEEECCHHHHHHHHHHH
Confidence 467776 9999999999999999995 466655542 7999999999999999988
No 405
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=61.42 E-value=19 Score=42.32 Aligned_cols=55 Identities=24% Similarity=0.285 Sum_probs=46.1
Q ss_pred cceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhC
Q 043164 447 THVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATN 510 (1049)
Q Consensus 447 s~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~Ln 510 (1049)
.++|+|+ ++..+...+|.++|+.||.| .|..+-+ ..|||.|.+.+.|..++..+.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 4678886 88888999999999999954 5666544 379999999999999999985
No 406
>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1
Probab=57.94 E-value=4.4 Score=27.88 Aligned_cols=17 Identities=12% Similarity=0.124 Sum_probs=12.4
Q ss_pred eeCCCcceeeecCCCce
Q 043164 626 YDGNSGIWYSYDQQTQQ 642 (1049)
Q Consensus 626 yd~~~~~yy~~d~~t~~ 642 (1049)
+|.++|..||||..|++
T Consensus 5 ~~~~~g~~YYyN~~T~~ 21 (27)
T 1e0n_A 5 IIHENGRPLYYNAEQKT 21 (27)
T ss_dssp EEESSSSEEEEETTTTE
T ss_pred EECCCCCeEEEECCCCC
Confidence 56677778888887754
No 407
>2jx8_A Hpcif1, phosphorylated CTD-interacting factor 1; protein fragment, WW domain, triple-standed beta-sheet, alpha-helix, nucleus, phosphorylation; NMR {Homo sapiens}
Probab=41.25 E-value=13 Score=29.61 Aligned_cols=18 Identities=17% Similarity=0.272 Sum_probs=13.5
Q ss_pred eeeCCCcceeeecCCCce
Q 043164 625 YYDGNSGIWYSYDQQTQQ 642 (1049)
Q Consensus 625 yyd~~~~~yy~~d~~t~~ 642 (1049)
.+|..+|.+||||..|++
T Consensus 18 ~~~~~~gr~YY~N~~T~~ 35 (52)
T 2jx8_A 18 CWSRRENRPYYFNRFTNQ 35 (52)
T ss_dssp EEETTTTEEEEEETTTTE
T ss_pred EEccccCCEEEEECCCCC
Confidence 466777888888888854
No 408
>2ebq_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.55 E-value=28 Score=27.22 Aligned_cols=34 Identities=18% Similarity=0.504 Sum_probs=29.2
Q ss_pred CCCccccccccccccccccccccccCCCCCCCCc
Q 043164 393 IPCDWMCTICGCVNFARRTSCFQCNEARTDDAPP 426 (1049)
Q Consensus 393 ~p~dw~~~~~~~~n~~~r~~~~~~~~~~~~~~~~ 426 (1049)
....|.|..|.+.|.+....|+-|..++....+.
T Consensus 8 ~~g~W~C~~C~v~N~a~~~kC~aCetpKpgs~~~ 41 (47)
T 2ebq_A 8 VIGTWDCDTCLVQNKPEAIKCVACETPKPGTCVK 41 (47)
T ss_dssp CSSSEECSSSCCEECSSCSBCSSSCCBCSCSSCG
T ss_pred CCCceECCeeeccCccCCceecCcCCCCCCCccC
Confidence 3468999999999999999999999998766543
No 409
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=31.55 E-value=2.6e+02 Score=24.50 Aligned_cols=70 Identities=13% Similarity=0.141 Sum_probs=51.4
Q ss_pred cceEEEeCCCccCcHHHHHHHhhccCCeeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhC---C--CeeccCCeEE
Q 043164 447 THVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATN---G--TTLEKNGQIL 521 (1049)
Q Consensus 447 s~~LfV~NLp~~~teedLre~Fs~fG~I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~Ln---G--~~~~i~Gr~L 521 (1049)
.+-|-|-|+|..+-..++.-.....|.--.|..+. |.|.|.|.+.++-..|++.|- + ..++|.|...
T Consensus 12 nclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkllnhnnnklqieirgqic 83 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQIC 83 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTEEE
T ss_pred CcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHHHhcCCCEEEEEEcceee
Confidence 35677889999988777777777778766676653 589999999999999998872 2 2445566665
Q ss_pred EEE
Q 043164 522 RVA 524 (1049)
Q Consensus 522 ~V~ 524 (1049)
.|-
T Consensus 84 dvi 86 (129)
T 4eyt_A 84 DVI 86 (129)
T ss_dssp EEE
T ss_pred eee
Confidence 554
No 410
>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.08 E-value=62 Score=25.25 Aligned_cols=31 Identities=29% Similarity=0.697 Sum_probs=27.6
Q ss_pred CCccccccccccccccccccccccCCCCCCC
Q 043164 394 PCDWMCTICGCVNFARRTSCFQCNEARTDDA 424 (1049)
Q Consensus 394 p~dw~~~~~~~~n~~~r~~~~~~~~~~~~~~ 424 (1049)
...|.|..|.+.|.+....|+-|..+++...
T Consensus 9 ~gsW~C~~C~v~N~a~~~kC~aC~~pkpg~~ 39 (47)
T 2ebr_A 9 EGSWDCELCLVQNKADSTKCLACESAKPGTK 39 (47)
T ss_dssp CSSCCCSSSCCCCCSSCSBCSSSCCBCCCCC
T ss_pred CCeeECCeeecCCcCCcceecCcCCCCCCCc
Confidence 4679999999999999999999999887654
No 411
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=29.16 E-value=2.9e+02 Score=24.21 Aligned_cols=71 Identities=20% Similarity=0.253 Sum_probs=52.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCccceEEEEcCCHHHHHHHHHHhcCCCeeeCCeeEE
Q 043164 282 AVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLF 361 (1049)
Q Consensus 282 ~~~ps~~L~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~dk~tg~srG~AFVeF~~~e~A~~Al~~l~~ng~~i~Gr~i~ 361 (1049)
.....+-|-|-|||..+-..++.-...-.|----|..+. |-|.|.|.+.++...|+..| +.-++..|.
T Consensus 8 sikqnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkl----lnhnnnklq 75 (129)
T 4eyt_A 8 SIKQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKL----LNHNNNKLQ 75 (129)
T ss_dssp --CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHH----EETTTTEEE
T ss_pred hhhhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHH----HhcCCCEEE
Confidence 445678889999999999998887777777655565542 47999999999999999887 223344555
Q ss_pred Eee
Q 043164 362 FEY 364 (1049)
Q Consensus 362 V~~ 364 (1049)
|+.
T Consensus 76 iei 78 (129)
T 4eyt_A 76 IEI 78 (129)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
No 412
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*
Probab=27.35 E-value=22 Score=31.70 Aligned_cols=29 Identities=31% Similarity=0.710 Sum_probs=25.1
Q ss_pred CCCccccccccccccccccccccccCCCC
Q 043164 393 IPCDWMCTICGCVNFARRTSCFQCNEART 421 (1049)
Q Consensus 393 ~p~dw~~~~~~~~n~~~r~~~~~~~~~~~ 421 (1049)
.+.+|.|..|.+.|++.+..|+.|..+++
T Consensus 62 ~~g~W~C~~C~~~N~a~~~~C~~C~~pkp 90 (92)
T 3gj8_B 62 PEGSWDCEVCLVQNKADSTKCIACESAKP 90 (92)
T ss_dssp --CCEECTTTCCEECSSCSBCTTTCCBCC
T ss_pred CCCcccCCcCCcCChhhcccccccCCCCC
Confidence 46899999999999999999999988764
No 413
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*
Probab=26.56 E-value=14 Score=33.11 Aligned_cols=29 Identities=24% Similarity=0.728 Sum_probs=0.0
Q ss_pred CCccccccccccccccccccccccCCCCC
Q 043164 394 PCDWMCTICGCVNFARRTSCFQCNEARTD 422 (1049)
Q Consensus 394 p~dw~~~~~~~~n~~~r~~~~~~~~~~~~ 422 (1049)
+.+|.|..|.+.||..+..|..|..+++.
T Consensus 6 ~g~W~C~~C~~~N~~~~~~C~~C~~pkp~ 34 (92)
T 3gj8_B 6 VGSWECPVCCVSNKAEDSRCVSCTSEKPG 34 (92)
T ss_dssp -----------------------------
T ss_pred CcCCCCCcCCCEeccccceecccCCCCCC
Confidence 46999999999999999999999998865
No 414
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=22.68 E-value=1.2e+02 Score=25.34 Aligned_cols=59 Identities=15% Similarity=0.200 Sum_probs=38.7
Q ss_pred cCcHHHHHHHhhccCC-----eeeEEEeecCCCCceeeEEEEEeCCHHHHHHHHHHhCCCeeccCCeEEEEEEee
Q 043164 458 YADEEMLRYEFSKHAP-----IKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYAK 527 (1049)
Q Consensus 458 ~~teedLre~Fs~fG~-----I~~v~I~rD~~tg~SrGfAFVeF~s~e~A~kAl~~LnG~~~~i~Gr~L~V~~Ak 527 (1049)
.+..-+|..++..-+. |-.|.|..+ |.||+-.. ..|..++..|++..+ .|+.|.|..++
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~-~~~~~~~~~l~~~~i--~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILN-GKGPHVLKVMKNTTV--KGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECT-TCHHHHHHHHTTCCC-----CCCEEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECH-HHHHHHHHHhccccC--cCceEEEEECC
Confidence 3566677777765543 556666432 88999876 567889999998888 69999887764
Done!