BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043166
(295 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6NMK1|GXM1_ARATH Glucuronoxylan 4-O-methyltransferase 1 OS=Arabidopsis thaliana
GN=GXM1 PE=1 SV=1
Length = 282
Score = 449 bits (1156), Expect = e-126, Method: Compositional matrix adjust.
Identities = 218/299 (72%), Positives = 249/299 (83%), Gaps = 22/299 (7%)
Query: 1 MRSKANQALNFKVLLLGIFLAFLLLFVVRSSLSLSKENPSPMSKTPLPKASNVKTNAEAE 60
MR KANQ KVLL+ + +L+F+VRS+L+ S+E+ +P E
Sbjct: 1 MRPKANQNHKLKVLLVFLLATLILIFIVRSTLTSSQEHQTPQ-----------------E 43
Query: 61 AEAANCSPTCTKIPRSLAQALIHYSTSTITPQQTLKEISVSARVLEKKAPCNFLVFGLGH 120
+ CS C K+PRSLAQALIHYSTS ITPQQTLKEI+VS+RVL KK+PCNFLVFGLGH
Sbjct: 44 TRSTRCSGACNKLPRSLAQALIHYSTSVITPQQTLKEIAVSSRVLGKKSPCNFLVFGLGH 103
Query: 121 DSLMWSTLNYGGRTIFLEEDEAWIEQIRRRFPMLESYHVTYDSKVNQAENLMDVGKGPEC 180
DSLMWS+LNYGGRT+FLEEDEAWI+QI+RRFPMLESYHVTYDSKVNQA+NL++VGKGPEC
Sbjct: 104 DSLMWSSLNYGGRTVFLEEDEAWIKQIKRRFPMLESYHVTYDSKVNQADNLIEVGKGPEC 163
Query: 181 TAIGDPKYSMCQLALKGLPAEVYDIKWDLIMVDAPTGYYEEAPGRMTAIYTAGMMARNR- 239
TAIGDP+YSMCQLALKGLPAE+Y+ WDLIMVDAPTGYY+EAPGRMTAIYTAGMMARNR
Sbjct: 164 TAIGDPRYSMCQLALKGLPAEIYETGWDLIMVDAPTGYYDEAPGRMTAIYTAGMMARNRK 223
Query: 240 EDGDTDVFVHDVNREVEDNFSKAFLCEGYMKKQEGRIRHFNIPSHRDGLE----RPFCP 294
+ G+TDVFVHDVNRE+ED FSKAFLCEGYMKKQEGR+RHF IPS+RDG E RPFCP
Sbjct: 224 QGGETDVFVHDVNREIEDKFSKAFLCEGYMKKQEGRLRHFIIPSYRDGSESESNRPFCP 282
>sp|Q9LQ32|GXM3_ARATH Glucuronoxylan 4-O-methyltransferase 3 OS=Arabidopsis thaliana
GN=GXM3 PE=1 SV=1
Length = 297
Score = 359 bits (921), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 168/294 (57%), Positives = 217/294 (73%), Gaps = 4/294 (1%)
Query: 1 MRSKANQALNFKVLLLGIFLAFLLLFVVRSSLSLSKENPSPMSKTPLPKASNVKTNAEAE 60
MR+K+ +LN KV IF+ +L ++ L+ S + S S + + +
Sbjct: 1 MRTKSPSSLNLKV----IFIGSSILILIIIYLARSNISSSSSKPISKTNLSQEEEETQHK 56
Query: 61 AEAANCSPTCTKIPRSLAQALIHYSTSTITPQQTLKEISVSARVLEKKAPCNFLVFGLGH 120
E + CTK+P SL+ AL+HY TS +TPQQT E+SVS RVL+KK+PCNFLVFGLGH
Sbjct: 57 QEGCPTTQQCTKMPLSLSDALVHYVTSNVTPQQTFDEVSVSKRVLDKKSPCNFLVFGLGH 116
Query: 121 DSLMWSTLNYGGRTIFLEEDEAWIEQIRRRFPMLESYHVTYDSKVNQAENLMDVGKGPEC 180
DSLMW++LN+GGRT+F+EED+AWI + ++FP LESYHV YD+KV ++ LM++G+ EC
Sbjct: 117 DSLMWASLNHGGRTLFIEEDQAWIAIVTKKFPNLESYHVVYDTKVKDSDKLMELGRSEEC 176
Query: 181 TAIGDPKYSMCQLALKGLPAEVYDIKWDLIMVDAPTGYYEEAPGRMTAIYTAGMMARNRE 240
++ DP+ S C LALK PA+ Y+ KWDLIMVDAPTGY+EEAPGRM+AIYTAG++ARNRE
Sbjct: 177 RSVSDPRNSKCDLALKDFPADFYETKWDLIMVDAPTGYHEEAPGRMSAIYTAGLLARNRE 236
Query: 241 DGDTDVFVHDVNREVEDNFSKAFLCEGYMKKQEGRIRHFNIPSHRDGLERPFCP 294
DG+TDVFVHDVNR VED FS FLC+GYM++Q GR+RHF IPSHR RPFCP
Sbjct: 237 DGETDVFVHDVNRPVEDEFSATFLCKGYMREQNGRLRHFTIPSHRARAGRPFCP 290
>sp|Q9T0F7|GXM2_ARATH Glucuronoxylan 4-O-methyltransferase 2 OS=Arabidopsis thaliana
GN=GXM2 PE=1 SV=1
Length = 290
Score = 358 bits (920), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 164/296 (55%), Positives = 218/296 (73%), Gaps = 15/296 (5%)
Query: 1 MRSKANQALNFKVLLLGI-FLAFLLLFVVRSSLSLSKENPSPMSKTPLPKASNVKTNAEA 59
MR+K+ ++ K++ + L +LF+ R+S S + + ++
Sbjct: 1 MRNKSQSFISSKLIFICCSILVLFILFLKRASFSSNS-------------TATIRDEYHQ 47
Query: 60 EAEAANCSPTCTKIPRSLAQALIHYSTSTITPQQTLKEISVSARVLEKKAPCNFLVFGLG 119
+++ + CTK+P SL+ AL+HY TS ITPQQT E+SVS RVL+KK+PCNFLVFGLG
Sbjct: 48 KSKCPSTPQQCTKLPTSLSDALVHYVTSEITPQQTFDEVSVSKRVLDKKSPCNFLVFGLG 107
Query: 120 HDSLMWSTLNYGGRTIFLEEDEAWIEQIRRRFPMLESYHVTYDSKVNQAENLMDVGKGPE 179
HDSLMW++LN+GGRT+FLEEDEAWIE + ++FP LESYHV YD+KV + LM++ + +
Sbjct: 108 HDSLMWASLNHGGRTLFLEEDEAWIETVTKKFPNLESYHVVYDTKVKDSNKLMELKRTED 167
Query: 180 CTAIGDPKYSMCQLALKGLPAEVYDIKWDLIMVDAPTGYYEEAPGRMTAIYTAGMMARNR 239
C A+ DP+ S C L+LKG PA+VY+ +WD+IMVDAPTGY++EAPGRM+AIYTAG++ARNR
Sbjct: 168 CKAVSDPRDSKCALSLKGFPADVYETQWDVIMVDAPTGYHDEAPGRMSAIYTAGLLARNR 227
Query: 240 ED-GDTDVFVHDVNREVEDNFSKAFLCEGYMKKQEGRIRHFNIPSHRDGLERPFCP 294
D G+TDVFVHD+NR VED FS AFLC GYMK+Q+GR+RHFNIPSHR PFCP
Sbjct: 228 YDGGETDVFVHDINRPVEDEFSVAFLCGGYMKEQQGRLRHFNIPSHRASFGTPFCP 283
>sp|Q9SNE5|IRX15_ARATH Protein IRREGULAR XYLEM 15 OS=Arabidopsis thaliana GN=IRX15 PE=2
SV=1
Length = 322
Score = 159 bits (401), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 91/268 (33%), Positives = 142/268 (52%), Gaps = 7/268 (2%)
Query: 19 FLAFLLLFVVRSSLSLSKENPSPMSKTPLPKASNVKTNAEAEAEAANCSPTCTKIPRSLA 78
LAF+ F + L+L + SK A+ +A+ + + +P S
Sbjct: 30 LLAFVSFFTIVFLLTLLYTRDTIPSKNTSVAAAVAAVVTGGSTPSASSPISNSNLPTSAI 89
Query: 79 QALIHY-STSTITPQQTLKEISVSARVLEKKAP-CNFLVFGLGHDSLMWSTLNYGGRTIF 136
AL+HY S S + + E+ + VL + AP CN LVFGL H++L+W +LN+ GRT+F
Sbjct: 90 NALLHYASRSNDSFHMSYGEMKSISDVLRRCAPPCNLLVFGLTHETLLWKSLNHNGRTVF 149
Query: 137 LEEDEAWIEQIRRRFPMLESYHVTYDSKVNQAENLMDVGK---GPECTAIGDPKYSMCQL 193
+EE+ + P ++ + V Y +K ++A L+ K G EC + + +S C+L
Sbjct: 150 IEENRYYAAYFEEIHPEIDVFDVQYTTKAHEAGELVTAAKEAAGNECRPVQNLLFSDCKL 209
Query: 194 ALKGLPAEVYDIKWDLIMVDAPTGYYEEAPGRMTAIYTAGMMARNREDG--DTDVFVHDV 251
L LP VYD+ WD+I VD P G E PGRM++I+TA ++AR+++ G T VFVHD
Sbjct: 210 GLNDLPNHVYDVDWDVIFVDGPRGDAHEGPGRMSSIFTAAVLARSKKGGTPKTHVFVHDY 269
Query: 252 NREVEDNFSKAFLCEGYMKKQEGRIRHF 279
R+VE FLC + + + H+
Sbjct: 270 YRDVERLCGDEFLCRENLVESNDLLAHY 297
>sp|Q9FH92|IX15L_ARATH Protein IRX15-LIKE OS=Arabidopsis thaliana GN=IRX15-L PE=2 SV=1
Length = 317
Score = 157 bits (398), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 88/268 (32%), Positives = 144/268 (53%), Gaps = 13/268 (4%)
Query: 19 FLAFLLLFVVRSSLSLSKENPSPMSKTPLPKASNVKTNAEAEAEAANCSPTCTKIPRSLA 78
LAF+ F + L+L S +S + N + +A + T +++P +
Sbjct: 29 LLAFVSFFTIAFLLTLLYTTDSIIS------SKNNSATVSSAVNSAVTTATISQLPTTAI 82
Query: 79 QALIHY-STSTITPQQTLKEISVSARVLEKKAP-CNFLVFGLGHDSLMWSTLNYGGRTIF 136
A++HY S S + + E+ + VL + +P CN LVFGL H++L+W +LN+ GRT+F
Sbjct: 83 NAMLHYASRSNDSYHMSYGEMKSISDVLRRCSPPCNLLVFGLTHETLLWKSLNHNGRTVF 142
Query: 137 LEEDEAWIEQIRRRFPMLESYHVTYDSKVNQAENLMDVGKGP---ECTAIGDPKYSMCQL 193
+EE+ + P +E + V Y +K +A L+ K EC + + +S C+L
Sbjct: 143 IEENRYYAAYFEEIHPEIEVFDVQYTTKAREARELVSAVKEAARNECRPVQNLLFSDCKL 202
Query: 194 ALKGLPAEVYDIKWDLIMVDAPTGYYEEAPGRMTAIYTAGMMARNREDGD--TDVFVHDV 251
L LP VYD+ WD+I+VD P G + PGRM++I+TA ++AR+++ G+ T VFVHD
Sbjct: 203 GLNDLPNHVYDVDWDVILVDGPRGDGGDVPGRMSSIFTAAVLARSKKGGNPKTHVFVHDY 262
Query: 252 NREVEDNFSKAFLCEGYMKKQEGRIRHF 279
R+VE FLC + + + H+
Sbjct: 263 YRDVERLCGDEFLCRENLVESNDLLAHY 290
>sp|Q9HRW3|RAD50_HALSA DNA double-strand break repair Rad50 ATPase OS=Halobacterium
salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
GN=rad50 PE=3 SV=1
Length = 883
Score = 35.8 bits (81), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 130 YGGRTIFLEEDEAWIEQIRRRFPMLESYHVTYDSKVNQAENLMDVGKGPEC 180
+G FL++ A +++R R L + + +V +AE L+D GK PEC
Sbjct: 407 FGAAEAFLDDATAERDELRERVATLRADRQSAADRVAEAEALLDEGKCPEC 457
>sp|B7H6Q4|RSMH_BACC4 Ribosomal RNA small subunit methyltransferase H OS=Bacillus cereus
(strain B4264) GN=rsmH PE=3 SV=1
Length = 310
Score = 35.0 bits (79), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 117 GLGHDSLMWSTLNYGGRTIFLEEDEAWIEQIRRRFPMLESYHVTYDSKVNQ-AENLMDVG 175
G GH S + S L GG+ I ++DE I+ + +F +T S AE L ++G
Sbjct: 31 GGGHSSYLLSQLTEGGKLIAFDQDEIAIQNAKEKFSSYGEQFITVKSNFRYLAEKLQEIG 90
>sp|Q819P8|RSMH_BACCR Ribosomal RNA small subunit methyltransferase H OS=Bacillus cereus
(strain ATCC 14579 / DSM 31) GN=rsmH PE=3 SV=1
Length = 310
Score = 35.0 bits (79), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 117 GLGHDSLMWSTLNYGGRTIFLEEDEAWIEQIRRRFPMLESYHVTYDSKVNQ-AENLMDVG 175
G GH S + S L GG+ I ++DE I+ + +F +T S AE L ++G
Sbjct: 31 GGGHSSYLLSQLTEGGKLIAFDQDEIAIQNAKEKFSSYGEQFITVKSNFRYLAEKLQEIG 90
>sp|B7IVF3|RSMH_BACC2 Ribosomal RNA small subunit methyltransferase H OS=Bacillus cereus
(strain G9842) GN=rsmH PE=3 SV=1
Length = 310
Score = 35.0 bits (79), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 117 GLGHDSLMWSTLNYGGRTIFLEEDEAWIEQIRRRFPMLESYHVTYDSKVNQ-AENLMDVG 175
G GH S + S L GG+ I ++DE I+ + +F +T S AE L ++G
Sbjct: 31 GGGHSSYLLSQLTEGGKLIAFDQDEIAIQNAKEKFSSYGEQFITVKSNFRYLAEKLQEIG 90
>sp|B9IVZ5|RSMH_BACCQ Ribosomal RNA small subunit methyltransferase H OS=Bacillus cereus
(strain Q1) GN=rsmH PE=3 SV=1
Length = 310
Score = 34.7 bits (78), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 117 GLGHDSLMWSTLNYGGRTIFLEEDEAWIEQIRRRFPMLESYHVTYDSKVNQ-AENLMDVG 175
G GH S + S L GGR I ++DE I+ + +F +T S +E L ++G
Sbjct: 31 GGGHSSYLLSQLTEGGRLIAFDQDEIAIQNAKEKFSSYGEQFITVKSNFRYLSEKLQELG 90
>sp|P62468|RSMH_BACC1 Ribosomal RNA small subunit methyltransferase H OS=Bacillus cereus
(strain ATCC 10987) GN=rsmH PE=3 SV=1
Length = 310
Score = 34.7 bits (78), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 117 GLGHDSLMWSTLNYGGRTIFLEEDEAWIEQIRRRFPMLESYHVTYDSKVNQ-AENLMDVG 175
G GH S + S L GGR I ++DE I+ + +F +T S +E L ++G
Sbjct: 31 GGGHSSYLLSQLTEGGRLIAFDQDEIAIQNAKEKFSSYGEQFITVKSNFRYLSEKLQELG 90
>sp|Q6HEP6|RSMH_BACHK Ribosomal RNA small subunit methyltransferase H OS=Bacillus
thuringiensis subsp. konkukian (strain 97-27) GN=rsmH
PE=3 SV=1
Length = 310
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 117 GLGHDSLMWSTLNYGGRTIFLEEDEAWIEQIRRRFPMLESYHVTYDSKVNQ-AENLMDVG 175
G GH S + S L GGR I ++DE I+ + +F +T S +E L ++G
Sbjct: 31 GGGHSSYLLSQLTEGGRLIAFDQDEIAIQNAKEKFSSYGEQFITVKSNFRYLSEKLQELG 90
>sp|Q636A8|RSMH_BACCZ Ribosomal RNA small subunit methyltransferase H OS=Bacillus cereus
(strain ZK / E33L) GN=rsmH PE=3 SV=1
Length = 310
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 117 GLGHDSLMWSTLNYGGRTIFLEEDEAWIEQIRRRFPMLESYHVTYDSKVNQ-AENLMDVG 175
G GH S + S L GGR I ++DE I+ + +F +T S +E L ++G
Sbjct: 31 GGGHSSYLLSQLTEGGRLIAFDQDEIAIQNAKEKFSSYGEQFITVKSNFRYLSEKLQELG 90
>sp|C1EPT2|RSMH_BACC3 Ribosomal RNA small subunit methyltransferase H OS=Bacillus cereus
(strain 03BB102) GN=rsmH PE=3 SV=1
Length = 310
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 117 GLGHDSLMWSTLNYGGRTIFLEEDEAWIEQIRRRFPMLESYHVTYDSKVNQ-AENLMDVG 175
G GH S + S L GGR I ++DE I+ + +F +T S +E L ++G
Sbjct: 31 GGGHSSYLLSQLTEGGRLIAFDQDEIAIQNAKEKFSSYGEQFITVKSNFRYLSEKLQELG 90
>sp|B7JK06|RSMH_BACC0 Ribosomal RNA small subunit methyltransferase H OS=Bacillus cereus
(strain AH820) GN=rsmH PE=3 SV=1
Length = 310
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 117 GLGHDSLMWSTLNYGGRTIFLEEDEAWIEQIRRRFPMLESYHVTYDSKVNQ-AENLMDVG 175
G GH S + S L GGR I ++DE I+ + +F +T S +E L ++G
Sbjct: 31 GGGHSSYLLSQLTEGGRLIAFDQDEIAIQNAKEKFSSYGEQFITVKSNFRYLSEKLQELG 90
>sp|Q81WC3|RSMH_BACAN Ribosomal RNA small subunit methyltransferase H OS=Bacillus
anthracis GN=rsmH PE=3 SV=1
Length = 310
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 117 GLGHDSLMWSTLNYGGRTIFLEEDEAWIEQIRRRFPMLESYHVTYDSKVNQ-AENLMDVG 175
G GH S + S L GGR I ++DE I+ + +F +T S +E L ++G
Sbjct: 31 GGGHSSYLLSQLTEGGRLIAFDQDEIAIQNAKEKFSSYGEQFITVKSNFRYLSEKLQELG 90
>sp|A0RHT9|RSMH_BACAH Ribosomal RNA small subunit methyltransferase H OS=Bacillus
thuringiensis (strain Al Hakam) GN=rsmH PE=3 SV=1
Length = 310
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 117 GLGHDSLMWSTLNYGGRTIFLEEDEAWIEQIRRRFPMLESYHVTYDSKVNQ-AENLMDVG 175
G GH S + S L GGR I ++DE I+ + +F +T S +E L ++G
Sbjct: 31 GGGHSSYLLSQLTEGGRLIAFDQDEIAIQNAKEKFSSYGEQFITVKSNFRYLSEKLQELG 90
>sp|C3L6F3|RSMH_BACAC Ribosomal RNA small subunit methyltransferase H OS=Bacillus
anthracis (strain CDC 684 / NRRL 3495) GN=rsmH PE=3 SV=1
Length = 310
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 117 GLGHDSLMWSTLNYGGRTIFLEEDEAWIEQIRRRFPMLESYHVTYDSKVNQ-AENLMDVG 175
G GH S + S L GGR I ++DE I+ + +F +T S +E L ++G
Sbjct: 31 GGGHSSYLLSQLTEGGRLIAFDQDEIAIQNAKEKFSSYGEQFITVKSNFRYLSEKLQELG 90
>sp|C3P688|RSMH_BACAA Ribosomal RNA small subunit methyltransferase H OS=Bacillus
anthracis (strain A0248) GN=rsmH PE=3 SV=1
Length = 310
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 117 GLGHDSLMWSTLNYGGRTIFLEEDEAWIEQIRRRFPMLESYHVTYDSKVNQ-AENLMDVG 175
G GH S + S L GGR I ++DE I+ + +F +T S +E L ++G
Sbjct: 31 GGGHSSYLLSQLTEGGRLIAFDQDEIAIQNAKEKFSSYGEQFITVKSNFRYLSEKLQELG 90
>sp|B7HM39|RSMH_BACC7 Ribosomal RNA small subunit methyltransferase H OS=Bacillus cereus
(strain AH187) GN=rsmH PE=3 SV=1
Length = 310
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 117 GLGHDSLMWSTLNYGGRTIFLEEDEAWIEQIRRRFPMLESYHVTYDSKVNQ-AENLMDVG 175
G GH S + S L GGR I ++DE I+ + +F +T S +E L ++G
Sbjct: 31 GGGHSSYLLSQLTEGGRLIAFDQDEIAIQNAKEKFSSYGEQFITVRSNFRYLSEKLQELG 90
>sp|A9VU80|RSMH_BACWK Ribosomal RNA small subunit methyltransferase H OS=Bacillus
weihenstephanensis (strain KBAB4) GN=rsmH PE=3 SV=1
Length = 310
Score = 32.7 bits (73), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 117 GLGHDSLMWSTLNYGGRTIFLEEDEAWIEQIRRRFPMLESYHVTYDSKVNQ-AENLMDVG 175
G GH S + S L GG+ I ++DE I+ + +F VT S +E L ++G
Sbjct: 31 GGGHSSYLLSQLTDGGKLIAFDQDEIAIQNAKEKFSSYGEQFVTVKSNFRYLSEKLHELG 90
>sp|C0ZGB3|RSMH_BREBN Ribosomal RNA small subunit methyltransferase H OS=Brevibacillus
brevis (strain 47 / JCM 6285 / NBRC 100599) GN=rsmH PE=3
SV=1
Length = 314
Score = 32.7 bits (73), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 117 GLGHDSLMWSTLNYGGRTIFLEEDEAWIEQIRRRF 151
G GH SL+ S L GGR I +++D+ ++ R R
Sbjct: 35 GAGHSSLIASKLTEGGRLIAIDQDDWALDNARERL 69
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,421,465
Number of Sequences: 539616
Number of extensions: 4395058
Number of successful extensions: 11084
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 11054
Number of HSP's gapped (non-prelim): 29
length of query: 295
length of database: 191,569,459
effective HSP length: 117
effective length of query: 178
effective length of database: 128,434,387
effective search space: 22861320886
effective search space used: 22861320886
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)