Query 043166
Match_columns 295
No_of_seqs 95 out of 97
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 13:33:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043166.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043166hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01627 A_thal_3515 uncharac 100.0 4E-122 9E-127 829.0 21.4 222 71-293 1-225 (225)
2 PF04669 Polysacc_synt_4: Poly 100.0 2.2E-87 4.7E-92 593.4 -8.6 184 96-279 1-190 (190)
3 COG0421 SpeE Spermidine syntha 94.6 0.19 4E-06 47.7 8.6 154 97-283 64-235 (282)
4 PLN02823 spermine synthase 94.2 0.36 7.7E-06 46.7 9.7 103 103-236 97-203 (336)
5 PLN02781 Probable caffeoyl-CoA 93.5 0.29 6.4E-06 44.2 7.3 78 74-151 29-113 (234)
6 PF01596 Methyltransf_3: O-met 93.5 0.34 7.4E-06 43.6 7.7 121 74-220 7-135 (205)
7 TIGR00417 speE spermidine synt 93.4 0.26 5.6E-06 45.1 6.9 51 104-154 67-119 (270)
8 PLN02476 O-methyltransferase 92.9 0.74 1.6E-05 43.7 9.4 118 74-217 81-205 (278)
9 PRK01581 speE spermidine synth 91.9 1.8 3.8E-05 43.2 10.8 147 105-284 146-313 (374)
10 PF01564 Spermine_synth: Sperm 91.7 0.51 1.1E-05 43.3 6.4 107 101-239 68-178 (246)
11 PRK00811 spermidine synthase; 91.2 1.3 2.7E-05 41.3 8.6 51 104-154 71-123 (283)
12 PRK03612 spermidine synthase; 90.6 1.6 3.6E-05 44.1 9.4 145 106-284 294-459 (521)
13 PRK04457 spermidine synthase; 86.7 15 0.00031 34.0 12.0 45 108-152 65-111 (262)
14 PLN02366 spermidine synthase 86.5 5 0.00011 38.4 9.2 148 106-285 88-254 (308)
15 cd02042 ParA ParA and ParB of 73.7 3.8 8.1E-05 31.3 3.0 14 207-220 40-53 (104)
16 COG0003 ArsA Predicted ATPase 66.2 1.6 3.5E-05 42.3 -0.6 26 193-218 112-138 (322)
17 PF10718 Ycf34: Hypothetical c 64.0 2.2 4.8E-05 34.3 -0.0 35 188-226 38-72 (77)
18 PLN02589 caffeoyl-CoA O-methyl 54.5 61 0.0013 30.3 7.6 121 75-220 43-170 (247)
19 PF09954 DUF2188: Uncharacteri 52.8 11 0.00023 27.6 2.0 51 206-259 10-60 (62)
20 TIGR03018 pepcterm_TyrKin exop 51.7 18 0.00038 31.6 3.5 51 92-142 9-76 (207)
21 PRK07402 precorrin-6B methylas 51.2 77 0.0017 27.2 7.3 80 65-151 2-84 (196)
22 PRK08618 ornithine cyclodeamin 51.1 35 0.00077 32.3 5.6 120 89-215 106-246 (325)
23 PRK05703 flhF flagellar biosyn 49.4 72 0.0016 31.9 7.7 25 206-231 299-323 (424)
24 PF13659 Methyltransf_26: Meth 48.5 22 0.00048 27.1 3.2 86 112-226 3-90 (117)
25 cd05013 SIS_RpiR RpiR-like pro 48.2 69 0.0015 24.7 5.9 84 97-182 2-90 (139)
26 cd02038 FleN-like FleN is a me 46.1 1.2E+02 0.0027 24.8 7.5 14 207-220 45-58 (139)
27 cd02035 ArsA ArsA ATPase funct 46.1 6.5 0.00014 34.7 -0.1 23 195-217 102-124 (217)
28 cd00550 ArsA_ATPase Oxyanion-t 42.8 7.6 0.00016 35.4 -0.2 13 204-216 122-134 (254)
29 PF06564 YhjQ: YhjQ protein; 42.2 14 0.00031 34.7 1.5 16 205-220 116-131 (243)
30 cd03110 Fer4_NifH_child This p 41.8 17 0.00036 30.4 1.7 16 205-220 91-106 (179)
31 TIGR03202 pucB xanthine dehydr 41.0 33 0.00071 29.0 3.4 30 223-254 78-107 (190)
32 KOG3022 Predicted ATPase, nucl 39.3 20 0.00043 35.2 2.0 67 202-282 149-226 (300)
33 PHA02663 hypothetical protein; 38.7 19 0.00042 32.2 1.7 19 220-238 82-101 (172)
34 TIGR00345 arsA arsenite-activa 38.2 17 0.00037 33.8 1.4 26 205-230 111-140 (284)
35 PRK00377 cbiT cobalt-precorrin 35.9 1.1E+02 0.0025 26.4 6.0 59 92-150 22-84 (198)
36 PF02374 ArsA_ATPase: Anion-tr 35.8 21 0.00046 33.8 1.6 27 204-230 124-154 (305)
37 PF13840 ACT_7: ACT domain ; P 34.4 15 0.00033 27.0 0.4 32 204-238 3-34 (65)
38 COG0489 Mrp ATPases involved i 34.4 14 0.00031 34.3 0.2 25 195-219 155-179 (265)
39 PF13538 UvrD_C_2: UvrD-like h 34.3 8.9 0.00019 29.1 -1.0 33 204-240 66-99 (104)
40 KOG4417 Predicted endonuclease 34.1 21 0.00046 34.1 1.3 25 195-219 104-133 (261)
41 COG1192 Soj ATPases involved i 34.0 23 0.0005 31.4 1.5 14 205-218 118-131 (259)
42 TIGR03587 Pse_Me-ase pseudamin 33.2 2E+02 0.0044 25.5 7.3 72 84-155 17-91 (204)
43 TIGR01969 minD_arch cell divis 32.7 26 0.00057 30.3 1.6 17 205-221 107-123 (251)
44 TIGR02371 ala_DH_arch alanine 32.2 1.9E+02 0.0041 27.6 7.3 118 89-214 107-245 (325)
45 COG1278 CspC Cold shock protei 32.0 28 0.00062 27.2 1.5 10 241-250 22-31 (67)
46 COG4122 Predicted O-methyltran 32.0 4.3E+02 0.0092 24.7 10.5 117 74-221 24-147 (219)
47 COG5639 Uncharacterized conser 31.0 49 0.0011 26.8 2.7 54 71-152 19-73 (77)
48 PF07172 GRP: Glycine rich pro 30.8 49 0.0011 27.0 2.8 14 13-26 6-19 (95)
49 cd03287 ABC_MSH3_euk MutS3 hom 30.8 2.3E+02 0.0049 25.9 7.3 69 96-164 96-177 (222)
50 cd03111 CpaE_like This protein 30.6 32 0.0007 27.1 1.6 12 208-219 44-55 (106)
51 PF02254 TrkA_N: TrkA-N domain 30.5 97 0.0021 23.9 4.3 105 113-261 1-107 (116)
52 cd06451 AGAT_like Alanine-glyo 30.2 3.4E+02 0.0073 24.8 8.4 70 71-141 8-83 (356)
53 TIGR01968 minD_bact septum sit 30.0 32 0.0007 29.9 1.7 16 205-220 110-125 (261)
54 PF01656 CbiA: CobQ/CobB/MinD/ 29.8 31 0.00066 28.5 1.4 15 207-221 95-109 (195)
55 PRK00536 speE spermidine synth 29.8 1.3E+02 0.0028 28.5 5.7 52 104-155 67-118 (262)
56 PHA02518 ParA-like protein; Pr 29.4 31 0.00067 29.1 1.4 14 205-218 75-88 (211)
57 PLN03181 glycosyltransferase; 29.2 1.2E+02 0.0027 31.4 5.8 22 13-34 34-55 (453)
58 cd01399 GlcN6P_deaminase GlcN6 28.5 77 0.0017 27.7 3.8 29 94-122 100-128 (232)
59 TIGR02469 CbiT precorrin-6Y C5 28.5 2.1E+02 0.0045 21.6 5.8 57 93-149 2-61 (124)
60 TIGR00563 rsmB ribosomal RNA s 27.7 65 0.0014 31.7 3.5 32 124-155 354-391 (426)
61 PRK10892 D-arabinose 5-phospha 27.4 1.2E+02 0.0027 28.1 5.1 86 96-182 34-124 (326)
62 PF12847 Methyltransf_18: Meth 27.1 1.5E+02 0.0032 22.3 4.7 40 112-151 4-45 (112)
63 TIGR02201 heptsyl_trn_III lipo 27.1 1.5E+02 0.0032 27.5 5.6 43 140-182 226-271 (344)
64 cd02037 MRP-like MRP (Multiple 26.8 36 0.00078 28.4 1.4 15 205-219 66-80 (169)
65 PF10717 ODV-E18: Occlusion-de 26.3 1.2E+02 0.0025 25.1 4.1 21 14-34 30-50 (85)
66 PF04072 LCM: Leucine carboxyl 26.0 1.3E+02 0.0027 26.0 4.6 32 109-140 78-109 (183)
67 TIGR00347 bioD dethiobiotin sy 25.9 44 0.00096 27.6 1.7 16 205-220 98-113 (166)
68 PF10038 DUF2274: Protein of u 25.2 51 0.0011 25.9 1.8 37 70-107 18-56 (69)
69 PRK11670 antiporter inner memb 25.1 45 0.00097 32.6 1.9 16 205-220 214-229 (369)
70 COG0373 HemA Glutamyl-tRNA red 24.7 5.2E+02 0.011 26.5 9.2 119 102-253 170-296 (414)
71 TIGR03371 cellulose_yhjQ cellu 24.6 44 0.00095 29.0 1.5 14 207-220 115-128 (246)
72 PRK03522 rumB 23S rRNA methylu 24.2 3.4E+02 0.0073 25.6 7.4 47 103-151 167-215 (315)
73 PF12273 RCR: Chitin synthesis 24.0 78 0.0017 26.3 2.8 14 15-28 4-18 (130)
74 TIGR03127 RuMP_HxlB 6-phospho 23.6 1.8E+02 0.0039 24.6 5.0 85 92-182 14-102 (179)
75 PHA02913 TGF-beta-like protein 23.4 42 0.00091 30.6 1.2 18 201-220 85-103 (172)
76 PF12317 IFT46_B_C: Intraflage 23.3 63 0.0014 30.4 2.4 35 141-175 119-153 (214)
77 PF11119 DUF2633: Protein of u 23.1 1.2E+02 0.0026 23.5 3.4 28 1-28 1-29 (59)
78 cd02036 MinD Bacterial cell di 22.9 56 0.0012 26.6 1.8 13 208-220 64-76 (179)
79 PF04250 DUF429: Protein of un 22.3 67 0.0014 28.2 2.2 19 206-225 41-59 (209)
80 PF02310 B12-binding: B12 bind 22.1 3.5E+02 0.0077 20.9 6.1 65 141-212 41-110 (121)
81 PRK10037 cell division protein 21.8 57 0.0012 29.2 1.7 15 205-219 116-130 (250)
82 TIGR03029 EpsG chain length de 21.8 56 0.0012 29.4 1.7 48 95-142 84-143 (274)
83 cd01078 NAD_bind_H4MPT_DH NADP 21.6 5.1E+02 0.011 22.1 8.5 116 109-225 27-161 (194)
84 smart00204 TGFB Transforming g 21.6 45 0.00098 27.0 1.0 18 201-220 9-27 (102)
85 PRK15463 cold shock-like prote 21.5 77 0.0017 24.3 2.2 9 241-249 25-33 (70)
86 PRK00090 bioD dithiobiotin syn 21.2 74 0.0016 27.7 2.3 16 204-219 101-116 (222)
87 PRK10742 putative methyltransf 20.6 1.1E+02 0.0023 29.4 3.3 30 117-148 98-127 (250)
88 cd01983 Fer4_NifH The Fer4_Nif 20.6 71 0.0015 22.5 1.7 13 208-220 35-47 (99)
89 CHL00175 minD septum-site dete 20.2 62 0.0013 29.3 1.6 14 206-219 126-139 (281)
90 PRK13946 shikimate kinase; Pro 20.2 2.4E+02 0.0051 24.2 5.1 52 97-150 69-123 (184)
91 PF13847 Methyltransf_31: Meth 20.1 2.1E+02 0.0046 23.3 4.6 41 109-149 3-46 (152)
No 1
>TIGR01627 A_thal_3515 uncharacterized plant-specific domain TIGR01627. This model represents an uncharacterized domain found in both Arabidopsis thaliana (at least 10 copies) and Oryza sativa. Most member proteins have only a short stretch of sequence N-terminal to this domain, but one has a long N-terminal extension that includes a protein kinase domain (pfam00069).
Probab=100.00 E-value=4e-122 Score=829.04 Aligned_cols=222 Identities=44% Similarity=0.768 Sum_probs=215.7
Q ss_pred CCCChhHHHhhhhhhcCCCCccccHHHHHHHHHHHhhcCCccEEeeccCchhhhhhhhccCCceeEeccChHHHHHHHhh
Q 043166 71 TKIPRSLAQALIHYSTSTITPQQTLKEISVSARVLEKKAPCNFLVFGLGHDSLMWSTLNYGGRTIFLEEDEAWIEQIRRR 150 (295)
Q Consensus 71 ~~lP~~v~~AlvhYatsn~tpqqt~~Ei~~~~~VL~~raPCNfLVFGLg~dslmW~alN~gGrTvFLeEd~~~i~~v~~~ 150 (295)
+++|++|++|||||||||+|||||.+||+++++||++||||||||||||||||||+||||||||||||||++||++++++
T Consensus 1 t~~p~~~a~AlvhYatsn~t~q~s~~Ei~~~~~VL~~raPCN~LVFGLghdsllW~aLN~gGrTvFLEEd~~~i~~~~~~ 80 (225)
T TIGR01627 1 TTFPLSPADALQHYRASNGPTALMEKELKLLSDVLTRRSPCNILVFGLAHQYLMWSSLNHRGRTVFIEEEKIMIAKAEVN 80 (225)
T ss_pred CCCchhHHHHHHHHHhcCCCcccCHHHHHHHHHHHHhcCCceEEEeccCcchHHHHHhcCCCeeEEecCCHHHHHHHhhc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeEEeeecchhhhHHHHHhhcC-CCCCCCCCCC-CCccccccccCCChhhhcccccEEEEeCCCCCCCCCCCchhh
Q 043166 151 FPMLESYHVTYDSKVNQAENLMDVGK-GPECTAIGDP-KYSMCQLALKGLPAEVYDIKWDLIMVDAPTGYYEEAPGRMTA 228 (295)
Q Consensus 151 ~p~leay~V~Y~t~~~ea~~LL~~~r-~~~C~p~~~~-~~S~CkLAl~~LP~evYe~~WDvImVDgP~Gy~~eaPGRM~a 228 (295)
+|+||+|+|+|+|+++||++||+.+| +|+|+|+|+. ++|+|||||+|||+||||++|||||||||+||+||+||||+|
T Consensus 81 ~p~leay~V~Y~t~~~~a~~LL~~~~~~~~C~p~~~~~~~s~C~Lal~~LP~~vYe~~WDvImVDgP~Gy~~eaPGRM~a 160 (225)
T TIGR01627 81 PPNTRIYSVKYHTKVRNAYNLLQHARANPECRPVMNHQGSSDCKLELRDLPQQVYNTKWDVIVVDGPRGDDLETPGRMSS 160 (225)
T ss_pred CCcceEEEEEeehhhhhHHHHHHHhccCCcccCCCCccccCcCccccccCCHHHhcccCcEEEEeCCCCCCCCCCcchhh
Confidence 99999999999999999999999999 5999999964 599999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhccCCC-CceEEEecCChhHHHHHHHhhcccccccccccceeeeEecCCCCCCCCCCC
Q 043166 229 IYTAGMMARNREDG-DTDVFVHDVNREVEDNFSKAFLCEGYMKKQEGRIRHFNIPSHRDGLERPFC 293 (295)
Q Consensus 229 IyTAavmAR~r~~g-~TdVfVHDVdR~VE~~~s~eFLC~~nlv~~~GrL~HF~Ip~~~~~~~~~FC 293 (295)
|||||||||+|++| +||||||||||+|||+|||||||++|||+++||||||+||++++.+ ++||
T Consensus 161 IyTAav~AR~r~~g~~TdVfVHDvdR~VE~~fs~eFLC~~~lv~~~grL~HF~Ip~~~~~~-~~FC 225 (225)
T TIGR01627 161 IYTAAVLARKGSSGSTTDVFVHDVHRTVEKWLSWEFLCQENLVEANGTLWHFRIKRQSNAS-RAFC 225 (225)
T ss_pred HHHHHHHHHhccCCCCceEEEecCCcHHHHHHHHHhcchHHHHhccCceeeEEecCCcCCC-CCCC
Confidence 99999999999874 7999999999999999999999999999999999999999998865 6899
No 2
>PF04669 Polysacc_synt_4: Polysaccharide biosynthesis; InterPro: IPR021148 This is a eukaryotic family of uncharacterised proteins. ; PDB: 2JYN_A.
Probab=100.00 E-value=2.2e-87 Score=593.40 Aligned_cols=184 Identities=57% Similarity=1.064 Sum_probs=106.7
Q ss_pred HHHHHHHHHHhhcCC-ccEEeeccCchhhhhhhhccCCceeEeccChHHHHHHHhhCCCceeEEeeecchhhhHHHHHhh
Q 043166 96 KEISVSARVLEKKAP-CNFLVFGLGHDSLMWSTLNYGGRTIFLEEDEAWIEQIRRRFPMLESYHVTYDSKVNQAENLMDV 174 (295)
Q Consensus 96 ~Ei~~~~~VL~~raP-CNfLVFGLg~dslmW~alN~gGrTvFLeEd~~~i~~v~~~~p~leay~V~Y~t~~~ea~~LL~~ 174 (295)
.||+.+++||++++| |||||||||||||||+++||||||||||||++||++++++||++++|+|+|+|++.++++||+.
T Consensus 1 ~E~~~a~~~l~~~~p~cNlLvfgl~~~sl~wt~ln~~GrTvFlee~~~~~~~~~~~fP~l~~~~v~y~t~~~~a~~Ll~~ 80 (190)
T PF04669_consen 1 IEIAWAAKVLQHREPYCNLLVFGLGPDSLLWTSLNDGGRTVFLEEDPAWYSSFRKRFPDLEAYHVRYRTKVIDADELLSK 80 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS--TTS--SSTTHHH-----------HHHHHHHH-TTT----SHHHHHB--STTTSSH
T ss_pred CcHHHHHHHHHHhCCCceEEEEeCCCccccchhcCcCcccchhhHHHHHHHHHHHHCcCCcccCcccccccCCHHHHhCc
Confidence 599999999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCccccccccCCChhhhcccccEEEEeCCCCCCCCCCCchhhhhhhhhhhhccCCC---CceEEEecC
Q 043166 175 GKGPECTAIGDPKYSMCQLALKGLPAEVYDIKWDLIMVDAPTGYYEEAPGRMTAIYTAGMMARNREDG---DTDVFVHDV 251 (295)
Q Consensus 175 ~r~~~C~p~~~~~~S~CkLAl~~LP~evYe~~WDvImVDgP~Gy~~eaPGRM~aIyTAavmAR~r~~g---~TdVfVHDV 251 (295)
+|+++|+|+|++++|+|||||+|||++||+++|||||||||+||+|+|||||+||||||||||+|++| +||||||||
T Consensus 81 ~~~~~C~~~~~~~~s~C~lal~~LP~~vy~~~WDvi~vd~p~g~~~daPGRM~aIytag~LaR~~~~~~~t~t~VfVhdv 160 (190)
T PF04669_consen 81 ARSPECRPVQNLRFSECKLALNDLPNEVYKEKWDVIFVDAPRGYVPDAPGRMAAIYTAGVLARARASGGYTETDVFVHDV 160 (190)
T ss_dssp H---------------------------HHHHH-HHHHHHHTTT-S---------TTS-EEEESBTTS-S-TTEEEE-HH
T ss_pred cccccccccccccccccccccccccchhhhhhHHHHHHHcCCCCCCccchhhhhhccHHHHhhccCCCCCCCCEEEEEcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999864 369999999
Q ss_pred ChhHHHHHHHhhcccccccccccc--eeee
Q 043166 252 NREVEDNFSKAFLCEGYMKKQEGR--IRHF 279 (295)
Q Consensus 252 dR~VE~~~s~eFLC~~nlv~~~Gr--L~HF 279 (295)
||+|||+||+||||++|+++++|+ ||||
T Consensus 161 ~R~vE~~~s~eFLc~e~l~~~~G~~~l~hF 190 (190)
T PF04669_consen 161 DRPVEKWFSEEFLCIEILRNREGRNDLWHF 190 (190)
T ss_dssp ----------HHHHHHHHHHHTTTTGGG--
T ss_pred cccccchhHHHHHHHHHHHhCCCchhhccC
Confidence 999999999999999999999999 9999
No 3
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=94.59 E-value=0.19 Score=47.70 Aligned_cols=154 Identities=22% Similarity=0.286 Sum_probs=111.0
Q ss_pred HHHHHHHHHhhcCCccEEeeccCchhhhhhhhccC--CceeEeccChHHHHHHHhhCCCce--eEEeeecchhhhHHHHH
Q 043166 97 EISVSARVLEKKAPCNFLVFGLGHDSLMWSTLNYG--GRTIFLEEDEAWIEQIRRRFPMLE--SYHVTYDSKVNQAENLM 172 (295)
Q Consensus 97 Ei~~~~~VL~~raPCNfLVFGLg~dslmW~alN~g--GrTvFLeEd~~~i~~v~~~~p~le--ay~V~Y~t~~~ea~~LL 172 (295)
|.-+....+.+..|=+.||-|+|--+.++..+-|. -+-+.+|=|+..|+-.++-.|... +++=+-.-.+.|+.+.+
T Consensus 64 Eml~h~~~~ah~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v 143 (282)
T COG0421 64 EMLAHVPLLAHPNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFL 143 (282)
T ss_pred HHHHhchhhhCCCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHH
Confidence 44445555666667799999999999999999998 699999999999999888887765 44333333446666666
Q ss_pred hhcCCCCCCCCCCCCCccccccccCCChhhhcccccEEEEeCCCCCCCCCCCchhhhhhhhhhhhcc----CCC-----C
Q 043166 173 DVGKGPECTAIGDPKYSMCQLALKGLPAEVYDIKWDLIMVDAPTGYYEEAPGRMTAIYTAGMMARNR----EDG-----D 243 (295)
Q Consensus 173 ~~~r~~~C~p~~~~~~S~CkLAl~~LP~evYe~~WDvImVDgP~Gy~~eaPGRM~aIyTAavmAR~r----~~g-----~ 243 (295)
+. -+ -++|||++|.-- |+.|| .+.||.-..--.+ .+| .
T Consensus 144 ~~-----------------------~~-----~~fDvIi~D~td---p~gp~--~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 144 RD-----------------------CE-----EKFDVIIVDSTD---PVGPA--EALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred Hh-----------------------CC-----CcCCEEEEcCCC---CCCcc--cccCCHHHHHHHHHhcCCCcEEEEec
Confidence 52 12 279999999766 44443 4556654433332 234 1
Q ss_pred ceEEEe-----cCChhHHHHHHHhhcccccccccccceeeeEecC
Q 043166 244 TDVFVH-----DVNREVEDNFSKAFLCEGYMKKQEGRIRHFNIPS 283 (295)
Q Consensus 244 TdVfVH-----DVdR~VE~~~s~eFLC~~nlv~~~GrL~HF~Ip~ 283 (295)
-+-|.| +.-|.++++|+..=...-.+-.-.+..|-|.+.+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~vf~~~~~~~~~ipt~~~g~~~f~~~s 235 (282)
T COG0421 191 GSPFLQDEEIALAYRNVSRVFSIVPPYVAPIPTYPSGFWGFIVAS 235 (282)
T ss_pred CCcccchHHHHHHHHHHHhhccccccceeccceecCCceEEEEee
Confidence 235666 5889999999988888888888888999999977
No 4
>PLN02823 spermine synthase
Probab=94.19 E-value=0.36 Score=46.71 Aligned_cols=103 Identities=17% Similarity=0.311 Sum_probs=67.1
Q ss_pred HHHhhcCCccEEeeccCchhhhhhhhccC--CceeEeccChHHHHHHHhhCCCce-eE-EeeecchhhhHHHHHhhcCCC
Q 043166 103 RVLEKKAPCNFLVFGLGHDSLMWSTLNYG--GRTIFLEEDEAWIEQIRRRFPMLE-SY-HVTYDSKVNQAENLMDVGKGP 178 (295)
Q Consensus 103 ~VL~~raPCNfLVFGLg~dslmW~alN~g--GrTvFLeEd~~~i~~v~~~~p~le-ay-~V~Y~t~~~ea~~LL~~~r~~ 178 (295)
-.+....|-+.||.|+|--++....+.|. .+-+.+|=|+.-++-.++-+|... ++ +=+-+-...||.+.|+..
T Consensus 97 ~l~~~~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~--- 173 (336)
T PLN02823 97 ALLHHPNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR--- 173 (336)
T ss_pred HHhhCCCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC---
Confidence 34445679999999999888887777764 467899999999998888776421 11 112222335566555311
Q ss_pred CCCCCCCCCCccccccccCCChhhhcccccEEEEeCCCCCCCCCCCchhhhhhhhhhh
Q 043166 179 ECTAIGDPKYSMCQLALKGLPAEVYDIKWDLIMVDAPTGYYEEAPGRMTAIYTAGMMA 236 (295)
Q Consensus 179 ~C~p~~~~~~S~CkLAl~~LP~evYe~~WDvImVDgP~Gy~~eaPGRM~aIyTAavmA 236 (295)
+-+||||++|.+. |...|-....||.-.+.
T Consensus 174 -------------------------~~~yDvIi~D~~d---p~~~~~~~~Lyt~eF~~ 203 (336)
T PLN02823 174 -------------------------DEKFDVIIGDLAD---PVEGGPCYQLYTKSFYE 203 (336)
T ss_pred -------------------------CCCccEEEecCCC---ccccCcchhhccHHHHH
Confidence 1269999999865 33333335578866544
No 5
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=93.51 E-value=0.29 Score=44.22 Aligned_cols=78 Identities=17% Similarity=0.089 Sum_probs=53.7
Q ss_pred ChhHHHhhhhhhcCC--CCccc--cHHHHHHHHHHHhhcCCccEEeecc--Cchhhhhhh-hccCCceeEeccChHHHHH
Q 043166 74 PRSLAQALIHYSTST--ITPQQ--TLKEISVSARVLEKKAPCNFLVFGL--GHDSLMWST-LNYGGRTIFLEEDEAWIEQ 146 (295)
Q Consensus 74 P~~v~~AlvhYatsn--~tpqq--t~~Ei~~~~~VL~~raPCNfLVFGL--g~dslmW~a-lN~gGrTvFLeEd~~~i~~ 146 (295)
..++++.+.+||..+ ..++| +..+-+.+..+++...|=++|-.|- |..++.+++ +..+|+-+.+|-|+++++.
T Consensus 29 ~~~~l~~~~~~a~~~~~~~~~~~v~~~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~ 108 (234)
T PLN02781 29 EHELLKELREATVQKYGNLSEMEVPVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEV 108 (234)
T ss_pred CCHHHHHHHHHHHhccccCcccccCHHHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHH
Confidence 446788888888655 33443 5555555555555567889999985 555555554 3457999999999999887
Q ss_pred HHhhC
Q 043166 147 IRRRF 151 (295)
Q Consensus 147 v~~~~ 151 (295)
.++..
T Consensus 109 A~~n~ 113 (234)
T PLN02781 109 GLEFI 113 (234)
T ss_pred HHHHH
Confidence 77653
No 6
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=93.50 E-value=0.34 Score=43.59 Aligned_cols=121 Identities=18% Similarity=0.235 Sum_probs=77.5
Q ss_pred ChhHHHhhhhhhcCCC-Cccc--cHHHHHHHHHHHhhcCCccEEeecc--Cchhhhhh-hhccCCceeEeccChHHHHHH
Q 043166 74 PRSLAQALIHYSTSTI-TPQQ--TLKEISVSARVLEKKAPCNFLVFGL--GHDSLMWS-TLNYGGRTIFLEEDEAWIEQI 147 (295)
Q Consensus 74 P~~v~~AlvhYatsn~-tpqq--t~~Ei~~~~~VL~~raPCNfLVFGL--g~dslmW~-alN~gGrTvFLeEd~~~i~~v 147 (295)
-++++..+.+++..+. .++| +..+-+.+...++..-|-|.|-+|- |.-++.|+ ++-.+|+-+=+|-|+++++..
T Consensus 7 ~~~~l~~l~~~t~~~~~~~~~~i~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A 86 (205)
T PF01596_consen 7 EPELLKELREFTRENQGLPQMSISPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIA 86 (205)
T ss_dssp STHHHHHHHHHHHCTTTTGGGSHHHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHH
T ss_pred CCHHHHHHHHHHHhCcCCCCCccCHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHH
Confidence 4567888999997665 5554 4455556665666688999999975 77777777 566789999999999998776
Q ss_pred HhhC--CCceeEEeeecchhhhHHHHHhhcCCCCCCCCCCCCCccccccccCCChhhhcccccEEEEeCCCCCCC
Q 043166 148 RRRF--PMLESYHVTYDSKVNQAENLMDVGKGPECTAIGDPKYSMCQLALKGLPAEVYDIKWDLIMVDAPTGYYE 220 (295)
Q Consensus 148 ~~~~--p~leay~V~Y~t~~~ea~~LL~~~r~~~C~p~~~~~~S~CkLAl~~LP~evYe~~WDvImVDgP~Gy~~ 220 (295)
++.+ -++. ..|++ ...+|.+.|..- .++--+-.+|+|.|||.++-++
T Consensus 87 ~~~~~~ag~~-~~I~~--~~gda~~~l~~l-----------------------~~~~~~~~fD~VFiDa~K~~y~ 135 (205)
T PF01596_consen 87 RENFRKAGLD-DRIEV--IEGDALEVLPEL-----------------------ANDGEEGQFDFVFIDADKRNYL 135 (205)
T ss_dssp HHHHHHTTGG-GGEEE--EES-HHHHHHHH-----------------------HHTTTTTSEEEEEEESTGGGHH
T ss_pred HHHHHhcCCC-CcEEE--EEeccHhhHHHH-----------------------HhccCCCceeEEEEcccccchh
Confidence 6432 2232 12332 225555555421 1111134699999999886443
No 7
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=93.43 E-value=0.26 Score=45.12 Aligned_cols=51 Identities=24% Similarity=0.406 Sum_probs=40.2
Q ss_pred HHhhcCCccEEeeccCchhhhhhhhccC--CceeEeccChHHHHHHHhhCCCc
Q 043166 104 VLEKKAPCNFLVFGLGHDSLMWSTLNYG--GRTIFLEEDEAWIEQIRRRFPML 154 (295)
Q Consensus 104 VL~~raPCNfLVFGLg~dslmW~alN~g--GrTvFLeEd~~~i~~v~~~~p~l 154 (295)
.+....|=+.|+.|.|--.+....+.++ .+.+.+|-|+..++..++..|.+
T Consensus 67 l~~~~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~ 119 (270)
T TIGR00417 67 LFTHPNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSL 119 (270)
T ss_pred hhcCCCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhh
Confidence 3445567799999999988887777775 57889999999998888766543
No 8
>PLN02476 O-methyltransferase
Probab=92.94 E-value=0.74 Score=43.75 Aligned_cols=118 Identities=14% Similarity=0.097 Sum_probs=75.7
Q ss_pred ChhHHHhhhhhhcCCCC--ccccHHHHHHHHHHHhhcCCccEEeeccCch-hhhhhhh--ccCCceeEeccChHHHHHHH
Q 043166 74 PRSLAQALIHYSTSTIT--PQQTLKEISVSARVLEKKAPCNFLVFGLGHD-SLMWSTL--NYGGRTIFLEEDEAWIEQIR 148 (295)
Q Consensus 74 P~~v~~AlvhYatsn~t--pqqt~~Ei~~~~~VL~~raPCNfLVFGLg~d-slmW~al--N~gGrTvFLeEd~~~i~~v~ 148 (295)
+.++++.+.+|+..+.- ++.+.++-+.+..+++...|=++|=.|-+-. |.+|.+. +.+|+-+=+|-|+.+++..+
T Consensus 81 ~~~~L~~l~e~a~~~~~~~~~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar 160 (278)
T PLN02476 81 EPKILRQLREETSKMRGSQMQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAK 160 (278)
T ss_pred CCHHHHHHHHHHHhccCCccccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence 55678888888876533 3557777777777777788999999976433 3445543 56899899999999887766
Q ss_pred hhC--CCceeEEeeecchhhhHHHHHhhcCCCCCCCCCCCCCccccccccCCChhhhcccccEEEEeCCCC
Q 043166 149 RRF--PMLESYHVTYDSKVNQAENLMDVGKGPECTAIGDPKYSMCQLALKGLPAEVYDIKWDLIMVDAPTG 217 (295)
Q Consensus 149 ~~~--p~leay~V~Y~t~~~ea~~LL~~~r~~~C~p~~~~~~S~CkLAl~~LP~evYe~~WDvImVDgP~G 217 (295)
+.+ -+++ ..|+.. ..+|.+.|..... +-.+-.+|+|.|||+++
T Consensus 161 ~n~~~aGl~-~~I~li--~GdA~e~L~~l~~-----------------------~~~~~~FD~VFIDa~K~ 205 (278)
T PLN02476 161 RYYELAGVS-HKVNVK--HGLAAESLKSMIQ-----------------------NGEGSSYDFAFVDADKR 205 (278)
T ss_pred HHHHHcCCC-CcEEEE--EcCHHHHHHHHHh-----------------------cccCCCCCEEEECCCHH
Confidence 543 3333 223222 2455555542110 00123599999999985
No 9
>PRK01581 speE spermidine synthase; Validated
Probab=91.88 E-value=1.8 Score=43.24 Aligned_cols=147 Identities=22% Similarity=0.284 Sum_probs=86.3
Q ss_pred HhhcCCccEEeeccCchhhhhhhhccC--CceeEeccChHHHHHHHhhCCCcee-----E-EeeecchhhhHHHHHhhcC
Q 043166 105 LEKKAPCNFLVFGLGHDSLMWSTLNYG--GRTIFLEEDEAWIEQIRRRFPMLES-----Y-HVTYDSKVNQAENLMDVGK 176 (295)
Q Consensus 105 L~~raPCNfLVFGLg~dslmW~alN~g--GrTvFLeEd~~~i~~v~~~~p~lea-----y-~V~Y~t~~~ea~~LL~~~r 176 (295)
+....|=+.||.|.|--..+=..+-|. ++-+-+|=|+.-++-.++ +|.+.. + +=+-+-.+.||.+.|..
T Consensus 146 ~~h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~-~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~-- 222 (374)
T PRK01581 146 SKVIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARN-VPELVSLNKSAFFDNRVNVHVCDAKEFLSS-- 222 (374)
T ss_pred HhCCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh-ccccchhccccCCCCceEEEECcHHHHHHh--
Confidence 344678899999999777666666654 688889999998887775 544421 1 11112223445544431
Q ss_pred CCCCCCCCCCCCccccccccCCChhhhcccccEEEEeCCCCCCCCCCCchhhhhhhhhhhhcc----CCCCc------eE
Q 043166 177 GPECTAIGDPKYSMCQLALKGLPAEVYDIKWDLIMVDAPTGYYEEAPGRMTAIYTAGMMARNR----EDGDT------DV 246 (295)
Q Consensus 177 ~~~C~p~~~~~~S~CkLAl~~LP~evYe~~WDvImVDgP~Gy~~eaPGRM~aIyTAavmAR~r----~~g~T------dV 246 (295)
. +-++|||++|.|.+..+ .....||...+...+ .||.- -.
T Consensus 223 ---------------------~-----~~~YDVIIvDl~DP~~~----~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~ 272 (374)
T PRK01581 223 ---------------------P-----SSLYDVIIIDFPDPATE----LLSTLYTSELFARIATFLTEDGAFVCQSNSPA 272 (374)
T ss_pred ---------------------c-----CCCccEEEEcCCCcccc----chhhhhHHHHHHHHHHhcCCCcEEEEecCChh
Confidence 1 12699999998753322 247788776655543 23420 01
Q ss_pred EEecCChhHHHHHHHhhccccccc---ccccceeeeEecCC
Q 043166 247 FVHDVNREVEDNFSKAFLCEGYMK---KQEGRIRHFNIPSH 284 (295)
Q Consensus 247 fVHDVdR~VE~~~s~eFLC~~nlv---~~~GrL~HF~Ip~~ 284 (295)
+-.++-..+-+++...|+--.... ..-|-+|=|.|.+.
T Consensus 273 ~~~~~~~~i~~tL~~af~~v~~y~t~vPsyg~~WgF~~as~ 313 (374)
T PRK01581 273 DAPLVYWSIGNTIEHAGLTVKSYHTIVPSFGTDWGFHIAAN 313 (374)
T ss_pred hhHHHHHHHHHHHHHhCCceEEEEEecCCCCCceEEEEEeC
Confidence 111222335666677777554332 24466799999865
No 10
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=91.66 E-value=0.51 Score=43.25 Aligned_cols=107 Identities=19% Similarity=0.292 Sum_probs=67.4
Q ss_pred HHHHHhhcCCccEEeeccCchhhhhhhhccC--CceeEeccChHHHHHHHhhCCCceeE--EeeecchhhhHHHHHhhcC
Q 043166 101 SARVLEKKAPCNFLVFGLGHDSLMWSTLNYG--GRTIFLEEDEAWIEQIRRRFPMLESY--HVTYDSKVNQAENLMDVGK 176 (295)
Q Consensus 101 ~~~VL~~raPCNfLVFGLg~dslmW~alN~g--GrTvFLeEd~~~i~~v~~~~p~leay--~V~Y~t~~~ea~~LL~~~r 176 (295)
-.-++....|=|.||.|+|--+..-..+.|. .+...+|-||.-++-.++-+|....- +=+.+....||.+.|+..
T Consensus 68 h~~~~~~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~- 146 (246)
T PF01564_consen 68 HPPLLLHPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKET- 146 (246)
T ss_dssp HHHHHHSSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTS-
T ss_pred hhHhhcCCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhc-
Confidence 3444555689999999999999988888886 57889999999888777655433211 111122335555555532
Q ss_pred CCCCCCCCCCCCccccccccCCChhhhcccccEEEEeCCCCCCCCCCCchhhhhhhhhhhhcc
Q 043166 177 GPECTAIGDPKYSMCQLALKGLPAEVYDIKWDLIMVDAPTGYYEEAPGRMTAIYTAGMMARNR 239 (295)
Q Consensus 177 ~~~C~p~~~~~~S~CkLAl~~LP~evYe~~WDvImVDgP~Gy~~eaPGRM~aIyTAavmAR~r 239 (295)
+.+ ++|||++|.+. |..|+-. .||.-.+...+
T Consensus 147 ----------------------~~~----~yDvIi~D~~d---p~~~~~~--l~t~ef~~~~~ 178 (246)
T PF01564_consen 147 ----------------------QEE----KYDVIIVDLTD---PDGPAPN--LFTREFYQLCK 178 (246)
T ss_dssp ----------------------SST-----EEEEEEESSS---TTSCGGG--GSSHHHHHHHH
T ss_pred ----------------------cCC----cccEEEEeCCC---CCCCccc--ccCHHHHHHHH
Confidence 222 79999999987 4444433 67765554443
No 11
>PRK00811 spermidine synthase; Provisional
Probab=91.23 E-value=1.3 Score=41.26 Aligned_cols=51 Identities=22% Similarity=0.395 Sum_probs=41.0
Q ss_pred HHhhcCCccEEeeccCchhhhhhhhcc-C-CceeEeccChHHHHHHHhhCCCc
Q 043166 104 VLEKKAPCNFLVFGLGHDSLMWSTLNY-G-GRTIFLEEDEAWIEQIRRRFPML 154 (295)
Q Consensus 104 VL~~raPCNfLVFGLg~dslmW~alN~-g-GrTvFLeEd~~~i~~v~~~~p~l 154 (295)
.+....|-++||.|.|--...-..+.+ + .+-+.+|=|+.-++..++.+|.+
T Consensus 71 ~~~~~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~ 123 (283)
T PRK00811 71 LFAHPNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEI 123 (283)
T ss_pred HhhCCCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHh
Confidence 344467999999999999888888887 3 47799999999999888876643
No 12
>PRK03612 spermidine synthase; Provisional
Probab=90.56 E-value=1.6 Score=44.09 Aligned_cols=145 Identities=21% Similarity=0.243 Sum_probs=81.7
Q ss_pred hhcCCccEEeeccCchhhhhhhhccC--CceeEeccChHHHHHHHh--hCCCcee--EE-eeecchhhhHHHHHhhcCCC
Q 043166 106 EKKAPCNFLVFGLGHDSLMWSTLNYG--GRTIFLEEDEAWIEQIRR--RFPMLES--YH-VTYDSKVNQAENLMDVGKGP 178 (295)
Q Consensus 106 ~~raPCNfLVFGLg~dslmW~alN~g--GrTvFLeEd~~~i~~v~~--~~p~lea--y~-V~Y~t~~~ea~~LL~~~r~~ 178 (295)
..+.|-+.|+.|.|--...-..+.|+ .+-+.+|=|+.-++..++ ..+++.. ++ =+.+-...|+.+.++.
T Consensus 294 ~~~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~---- 369 (521)
T PRK03612 294 ASARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRK---- 369 (521)
T ss_pred hCCCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHh----
Confidence 34678999999999888776667775 489999999999998887 3333321 11 0011122344444431
Q ss_pred CCCCCCCCCCccccccccCCChhhhcccccEEEEeCCCCCCCCCCCchhhhhhhhhhhhc----cCCCCceEE-----Ee
Q 043166 179 ECTAIGDPKYSMCQLALKGLPAEVYDIKWDLIMVDAPTGYYEEAPGRMTAIYTAGMMARN----REDGDTDVF-----VH 249 (295)
Q Consensus 179 ~C~p~~~~~~S~CkLAl~~LP~evYe~~WDvImVDgP~Gy~~eaPGRM~aIyTAavmAR~----r~~g~TdVf-----VH 249 (295)
.+ -++|+|++|.|..+.|. + ...||...+... +.+| .=|+ .|
T Consensus 370 -------------------~~-----~~fDvIi~D~~~~~~~~-~---~~L~t~ef~~~~~~~L~pgG-~lv~~~~~~~~ 420 (521)
T PRK03612 370 -------------------LA-----EKFDVIIVDLPDPSNPA-L---GKLYSVEFYRLLKRRLAPDG-LLVVQSTSPYF 420 (521)
T ss_pred -------------------CC-----CCCCEEEEeCCCCCCcc-h---hccchHHHHHHHHHhcCCCe-EEEEecCCccc
Confidence 11 26899999987643322 2 335554333322 2334 2121 12
Q ss_pred c--CChhHHHHHHHh-hccccccc--ccccceeeeEecCC
Q 043166 250 D--VNREVEDNFSKA-FLCEGYMK--KQEGRIRHFNIPSH 284 (295)
Q Consensus 250 D--VdR~VE~~~s~e-FLC~~nlv--~~~GrL~HF~Ip~~ 284 (295)
+ .-.++.+...+. |-+..|.+ ..-| .|.|.+.+.
T Consensus 421 ~~~~~~~i~~~l~~~gf~v~~~~~~vps~g-~w~f~~as~ 459 (521)
T PRK03612 421 APKAFWSIEATLEAAGLATTPYHVNVPSFG-EWGFVLAGA 459 (521)
T ss_pred chHHHHHHHHHHHHcCCEEEEEEeCCCCcc-hhHHHeeeC
Confidence 2 123455666666 53333332 3445 899999865
No 13
>PRK04457 spermidine synthase; Provisional
Probab=86.65 E-value=15 Score=34.01 Aligned_cols=45 Identities=29% Similarity=0.298 Sum_probs=36.9
Q ss_pred cCCccEEeeccCchhhh--hhhhccCCceeEeccChHHHHHHHhhCC
Q 043166 108 KAPCNFLVFGLGHDSLM--WSTLNYGGRTIFLEEDEAWIEQIRRRFP 152 (295)
Q Consensus 108 raPCNfLVFGLg~dslm--W~alN~gGrTvFLeEd~~~i~~v~~~~p 152 (295)
..|=++|+.|+|.-++. |....++++-+-+|=||.-++..++.+.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~ 111 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFE 111 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcC
Confidence 45788999999888764 6667778888999999999998887653
No 14
>PLN02366 spermidine synthase
Probab=86.51 E-value=5 Score=38.39 Aligned_cols=148 Identities=16% Similarity=0.240 Sum_probs=83.4
Q ss_pred hhcCCccEEeeccCchhhhhhhhccC--CceeEeccChHHHHHHHhhCCCcee-E-EeeecchhhhHHHHHhhcCCCCCC
Q 043166 106 EKKAPCNFLVFGLGHDSLMWSTLNYG--GRTIFLEEDEAWIEQIRRRFPMLES-Y-HVTYDSKVNQAENLMDVGKGPECT 181 (295)
Q Consensus 106 ~~raPCNfLVFGLg~dslmW~alN~g--GrTvFLeEd~~~i~~v~~~~p~lea-y-~V~Y~t~~~ea~~LL~~~r~~~C~ 181 (295)
....|=+.||.|.|.-.+.-..+.|. .+-+.+|=|+.-|+-.++.+|.+.. + +=+.+-...||.+.++
T Consensus 88 ~~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~-------- 159 (308)
T PLN02366 88 SIPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLK-------- 159 (308)
T ss_pred hCCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHh--------
Confidence 34568899999999887776666664 3667888899988888877765310 0 0011111233333332
Q ss_pred CCCCCCCccccccccCCChhhhcccccEEEEeCCCCCCCCCCCchhhhhhhhhhhhc----cCCCC-----ceEEEe-cC
Q 043166 182 AIGDPKYSMCQLALKGLPAEVYDIKWDLIMVDAPTGYYEEAPGRMTAIYTAGMMARN----REDGD-----TDVFVH-DV 251 (295)
Q Consensus 182 p~~~~~~S~CkLAl~~LP~evYe~~WDvImVDgP~Gy~~eaPGRM~aIyTAavmAR~----r~~g~-----TdVfVH-DV 251 (295)
+.| +-++|||++|++....| + ...||...+..- +.+|. ...+.| +.
T Consensus 160 ---------------~~~----~~~yDvIi~D~~dp~~~--~---~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~~~ 215 (308)
T PLN02366 160 ---------------NAP----EGTYDAIIVDSSDPVGP--A---QELFEKPFFESVARALRPGGVVCTQAESMWLHMDL 215 (308)
T ss_pred ---------------hcc----CCCCCEEEEcCCCCCCc--h---hhhhHHHHHHHHHHhcCCCcEEEECcCCcccchHH
Confidence 222 23699999999876544 2 334555444433 33452 122333 23
Q ss_pred ChhHHHHHHHhhc--ccccc--cc-cccceeeeEecCCC
Q 043166 252 NREVEDNFSKAFL--CEGYM--KK-QEGRIRHFNIPSHR 285 (295)
Q Consensus 252 dR~VE~~~s~eFL--C~~nl--v~-~~GrL~HF~Ip~~~ 285 (295)
-+.+-+.+...|- ..-|. |- -.|-.|-|.+.+..
T Consensus 216 ~~~i~~tl~~~F~~~v~~~~~~vPsy~~g~w~f~~as~~ 254 (308)
T PLN02366 216 IEDLIAICRETFKGSVNYAWTTVPTYPSGVIGFVLCSKE 254 (308)
T ss_pred HHHHHHHHHHHCCCceeEEEecCCCcCCCceEEEEEECC
Confidence 3455666677771 12111 11 23467999998764
No 15
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=73.74 E-value=3.8 Score=31.26 Aligned_cols=14 Identities=29% Similarity=0.596 Sum_probs=12.1
Q ss_pred ccEEEEeCCCCCCC
Q 043166 207 WDLIMVDAPTGYYE 220 (295)
Q Consensus 207 WDvImVDgP~Gy~~ 220 (295)
+|+|+||.|.++.+
T Consensus 40 ~d~viiD~p~~~~~ 53 (104)
T cd02042 40 YDYIIIDTPPSLGL 53 (104)
T ss_pred CCEEEEeCcCCCCH
Confidence 89999999997754
No 16
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=66.15 E-value=1.6 Score=42.27 Aligned_cols=26 Identities=42% Similarity=0.529 Sum_probs=19.2
Q ss_pred ccccCCChhhhcccccEEEEe-CCCCC
Q 043166 193 LALKGLPAEVYDIKWDLIMVD-APTGY 218 (295)
Q Consensus 193 LAl~~LP~evYe~~WDvImVD-gP~Gy 218 (295)
+++..+=..+.+-+||+|+|| +|+|.
T Consensus 112 ~~l~~i~e~~~~~~yD~IV~DtaPTG~ 138 (322)
T COG0003 112 LALLKILEYYVSGEYDVIVVDTAPTGH 138 (322)
T ss_pred HHHHHHHHHHhccCCCEEEEcCCChHH
Confidence 344455556677789999999 77886
No 17
>PF10718 Ycf34: Hypothetical chloroplast protein Ycf34; InterPro: IPR019656 This entry represents Ycf34, a protein encoded in algal genomes and additionally found in cyanobacteria. The function is not known. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=64.01 E-value=2.2 Score=34.26 Aligned_cols=35 Identities=17% Similarity=0.456 Sum_probs=24.3
Q ss_pred CccccccccCCChhhhcccccEEEEeCCCCCCCCCCCch
Q 043166 188 YSMCQLALKGLPAEVYDIKWDLIMVDAPTGYYEEAPGRM 226 (295)
Q Consensus 188 ~S~CkLAl~~LP~evYe~~WDvImVDgP~Gy~~eaPGRM 226 (295)
+..=..-|+++++..|++||||+=-+ -|-+-|||-
T Consensus 38 ~P~I~VnI~~~~~~~~~~EWDVv~C~----SF~ee~GkW 72 (77)
T PF10718_consen 38 EPTIHVNIRSLKNGEIEMEWDVVGCL----SFVEEPGKW 72 (77)
T ss_pred CCEEEEEEEeCCCCcEEEEEEecccc----cchhcCCch
Confidence 33344678899999999999998433 244556653
No 18
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=54.51 E-value=61 Score=30.27 Aligned_cols=121 Identities=16% Similarity=0.118 Sum_probs=76.7
Q ss_pred hhHHHhhhhhhcCCCCccc--cHHHHHHHHHHHhhcCCccEEeecc--Cchhhhhh-hhccCCceeEeccChHHHHHHHh
Q 043166 75 RSLAQALIHYSTSTITPQQ--TLKEISVSARVLEKKAPCNFLVFGL--GHDSLMWS-TLNYGGRTIFLEEDEAWIEQIRR 149 (295)
Q Consensus 75 ~~v~~AlvhYatsn~tpqq--t~~Ei~~~~~VL~~raPCNfLVFGL--g~dslmW~-alN~gGrTvFLeEd~~~i~~v~~ 149 (295)
.++++.+.++|..+..|.| +.++-+.+..+++...|=|.|-+|- |.-++.++ ++..+|+-+=+|=|+.+++..++
T Consensus 43 ~~~L~~l~~~a~~~~~~~~~~~~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~ 122 (247)
T PLN02589 43 PESMKELRELTAKHPWNIMTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLP 122 (247)
T ss_pred CHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHH
Confidence 4567788888876655544 5677777777777788999999985 55555443 34568999999999998876654
Q ss_pred hC--CCceeEEeeecchhhhHHHHHhhcCCCCCCCCCCCCCccccccccCCChhhhcccccEEEEeCCCCCCC
Q 043166 150 RF--PMLESYHVTYDSKVNQAENLMDVGKGPECTAIGDPKYSMCQLALKGLPAEVYDIKWDLIMVDAPTGYYE 220 (295)
Q Consensus 150 ~~--p~leay~V~Y~t~~~ea~~LL~~~r~~~C~p~~~~~~S~CkLAl~~LP~evYe~~WDvImVDgP~Gy~~ 220 (295)
.. -++. ..|.+. ..+|.+.|..-... .-|+-.+|+|.|||-++-++
T Consensus 123 ~~~~ag~~-~~I~~~--~G~a~e~L~~l~~~----------------------~~~~~~fD~iFiDadK~~Y~ 170 (247)
T PLN02589 123 VIQKAGVA-HKIDFR--EGPALPVLDQMIED----------------------GKYHGTFDFIFVDADKDNYI 170 (247)
T ss_pred HHHHCCCC-CceEEE--eccHHHHHHHHHhc----------------------cccCCcccEEEecCCHHHhH
Confidence 32 2332 344332 23455544321100 01234699999998876544
No 19
>PF09954 DUF2188: Uncharacterized protein conserved in bacteria (DUF2188); InterPro: IPR018691 This family has no known function.
Probab=52.83 E-value=11 Score=27.61 Aligned_cols=51 Identities=18% Similarity=0.301 Sum_probs=36.5
Q ss_pred cccEEEEeCCCCCCCCCCCchhhhhhhhhhhhccCCCCceEEEecCChhHHHHH
Q 043166 206 KWDLIMVDAPTGYYEEAPGRMTAIYTAGMMARNREDGDTDVFVHDVNREVEDNF 259 (295)
Q Consensus 206 ~WDvImVDgP~Gy~~eaPGRM~aIyTAavmAR~r~~g~TdVfVHDVdR~VE~~~ 259 (295)
.|-|-.-.+- .-.-..+-+-.||=-|-.||+. .+.+.|+||+-|..|++..
T Consensus 10 ~W~v~~eg~~-ra~~~~~Tk~eAi~~Ar~~a~~--~~~~el~Ih~~dG~i~~~~ 60 (62)
T PF09954_consen 10 GWAVKKEGAK-RASKTFDTKAEAIEAARELAKN--QGGGELIIHGRDGKIREER 60 (62)
T ss_pred CceEEeCCCc-ccccccCcHHHHHHHHHHHHHh--CCCcEEEEECCCCeEEEee
Confidence 4766654332 1234455677899999888876 4579999999999988653
No 20
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=51.68 E-value=18 Score=31.58 Aligned_cols=51 Identities=22% Similarity=0.296 Sum_probs=35.7
Q ss_pred cccHHHHHHHHHHHhhcC-------CccEEee-----ccCchh----hhhhhh-ccCCceeEeccChH
Q 043166 92 QQTLKEISVSARVLEKKA-------PCNFLVF-----GLGHDS----LMWSTL-NYGGRTIFLEEDEA 142 (295)
Q Consensus 92 qqt~~Ei~~~~~VL~~ra-------PCNfLVF-----GLg~ds----lmW~al-N~gGrTvFLeEd~~ 142 (295)
.-+.+|++.+.+.|..++ ..+.+.| |-|.-+ +.|+.- ++|-|++.+|-|+.
T Consensus 9 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~ 76 (207)
T TIGR03018 9 SRIAEEFRKIKRPLLANAFSANRKKNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLR 76 (207)
T ss_pred CHHHHHHHHHHHHHHHhccccccCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 447788999988888654 4776666 556655 344433 46889999999875
No 21
>PRK07402 precorrin-6B methylase; Provisional
Probab=51.23 E-value=77 Score=27.23 Aligned_cols=80 Identities=23% Similarity=0.217 Sum_probs=56.0
Q ss_pred cCCCCCCCCChhHHHhhhhhhcCCCCccccHHHHHH-HHHHHhhcCCccEEeeccCchhh--hhhhhccCCceeEeccCh
Q 043166 65 NCSPTCTKIPRSLAQALIHYSTSTITPQQTLKEISV-SARVLEKKAPCNFLVFGLGHDSL--MWSTLNYGGRTIFLEEDE 141 (295)
Q Consensus 65 ~~~~~c~~lP~~v~~AlvhYatsn~tpqqt~~Ei~~-~~~VL~~raPCNfLVFGLg~dsl--mW~alN~gGrTvFLeEd~ 141 (295)
.|+.+-.+||.... +..... .+|..|++. +.+.|.-+..-.+|=+|=|.-.+ .++..+++|+-+-+|-|+
T Consensus 2 ~~~~~~~~~~d~~~------~~~~~~-p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~ 74 (196)
T PRK07402 2 LWPYVTPGIPDELF------ERLPGI-PLTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDE 74 (196)
T ss_pred CCCcCCCCCChHHh------ccCCCC-CCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCH
Confidence 47777778888743 333333 488999995 57777555556788887766654 444466788888999999
Q ss_pred HHHHHHHhhC
Q 043166 142 AWIEQIRRRF 151 (295)
Q Consensus 142 ~~i~~v~~~~ 151 (295)
..++.++++.
T Consensus 75 ~~~~~a~~n~ 84 (196)
T PRK07402 75 EVVNLIRRNC 84 (196)
T ss_pred HHHHHHHHHH
Confidence 9988877653
No 22
>PRK08618 ornithine cyclodeaminase; Validated
Probab=51.13 E-value=35 Score=32.29 Aligned_cols=120 Identities=14% Similarity=0.152 Sum_probs=65.2
Q ss_pred CCccccHHHHHHHHHHHhhcCCccEEeeccCchh--hhhhhh-ccCCceeEe-ccChHHHHHHHhhC---CCceeEEeee
Q 043166 89 ITPQQTLKEISVSARVLEKKAPCNFLVFGLGHDS--LMWSTL-NYGGRTIFL-EEDEAWIEQIRRRF---PMLESYHVTY 161 (295)
Q Consensus 89 ~tpqqt~~Ei~~~~~VL~~raPCNfLVFGLg~ds--lmW~al-N~gGrTvFL-eEd~~~i~~v~~~~---p~leay~V~Y 161 (295)
+|.--|.+==.+..+.|.++.+.+++|||.|.+. .+++.+ ..+-+.|.+ .-+++-.+.+.++. .+++.. .|
T Consensus 106 lT~~RTaa~sala~~~la~~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~--~~ 183 (325)
T PRK08618 106 LTQIRTGALSGVATKYLAREDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIY--VV 183 (325)
T ss_pred hhhhhHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEE--Ee
Confidence 4445566666667788888889999999999986 344433 234455554 45655554444322 122211 12
Q ss_pred cchhhhHHHHHhhcC-CCCCCCCCCC-----CCccccc--------cccCCChhhhcccccEEEEeCC
Q 043166 162 DSKVNQAENLMDVGK-GPECTAIGDP-----KYSMCQL--------ALKGLPAEVYDIKWDLIMVDAP 215 (295)
Q Consensus 162 ~t~~~ea~~LL~~~r-~~~C~p~~~~-----~~S~CkL--------Al~~LP~evYe~~WDvImVDgP 215 (295)
.+.+++++.+. ==-|.|...+ ....+.+ ..+.+|.++.+-. |.|+||-.
T Consensus 184 ----~~~~~~~~~aDiVi~aT~s~~p~i~~~l~~G~hV~~iGs~~p~~~E~~~~~~~~a-~~vvvD~~ 246 (325)
T PRK08618 184 ----NSADEAIEEADIIVTVTNAKTPVFSEKLKKGVHINAVGSFMPDMQELPSEAIARA-NKVVVESK 246 (325)
T ss_pred ----CCHHHHHhcCCEEEEccCCCCcchHHhcCCCcEEEecCCCCcccccCCHHHHhhC-CEEEECCH
Confidence 23344444333 1123332221 1122222 3578888877644 77888864
No 23
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=49.41 E-value=72 Score=31.91 Aligned_cols=25 Identities=16% Similarity=0.349 Sum_probs=19.0
Q ss_pred cccEEEEeCCCCCCCCCCCchhhhhh
Q 043166 206 KWDLIMVDAPTGYYEEAPGRMTAIYT 231 (295)
Q Consensus 206 ~WDvImVDgP~Gy~~eaPGRM~aIyT 231 (295)
..|+|+||.| |+.+.-+..|..+..
T Consensus 299 ~~DlVlIDt~-G~~~~d~~~~~~L~~ 323 (424)
T PRK05703 299 DCDVILIDTA-GRSQRDKRLIEELKA 323 (424)
T ss_pred CCCEEEEeCC-CCCCCCHHHHHHHHH
Confidence 3699999998 888877777665543
No 24
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=48.48 E-value=22 Score=27.15 Aligned_cols=86 Identities=27% Similarity=0.363 Sum_probs=50.6
Q ss_pred cEEeeccCchhhhhhhhccC-CceeEeccChHHHHHHHhhCCCcee-EEeeecchhhhHHHHHhhcCCCCCCCCCCCCCc
Q 043166 112 NFLVFGLGHDSLMWSTLNYG-GRTIFLEEDEAWIEQIRRRFPMLES-YHVTYDSKVNQAENLMDVGKGPECTAIGDPKYS 189 (295)
Q Consensus 112 NfLVFGLg~dslmW~alN~g-GrTvFLeEd~~~i~~v~~~~p~lea-y~V~Y~t~~~ea~~LL~~~r~~~C~p~~~~~~S 189 (295)
.+|-.|-|--..+..++..+ .+.+-+|=||..++..+.+.+.... ..+++ ...++.++
T Consensus 3 ~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~--~~~D~~~~------------------ 62 (117)
T PF13659_consen 3 RVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEV--IVGDARDL------------------ 62 (117)
T ss_dssp EEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEE--EESHHHHH------------------
T ss_pred EEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEE--EECchhhc------------------
Confidence 46777888888888888888 7888899999988877766554322 00111 11222222
Q ss_pred cccccccCCChhhhcccccEEEEeCCCCCCCCCCCch
Q 043166 190 MCQLALKGLPAEVYDIKWDLIMVDAPTGYYEEAPGRM 226 (295)
Q Consensus 190 ~CkLAl~~LP~evYe~~WDvImVDgP~Gy~~eaPGRM 226 (295)
+..+-+-.+|+|+-|-|-+...+.+...
T Consensus 63 ---------~~~~~~~~~D~Iv~npP~~~~~~~~~~~ 90 (117)
T PF13659_consen 63 ---------PEPLPDGKFDLIVTNPPYGPRSGDKAAL 90 (117)
T ss_dssp ---------HHTCTTT-EEEEEE--STTSBTT----G
T ss_pred ---------hhhccCceeEEEEECCCCccccccchhh
Confidence 1222245699999999998765444443
No 25
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=48.15 E-value=69 Score=24.69 Aligned_cols=84 Identities=13% Similarity=0.241 Sum_probs=48.3
Q ss_pred HHHHHHHHHhhcCCccEEeeccCchhhhhhhh----c-cCCceeEeccChHHHHHHHhhCCCceeEEeeecchhhhHHHH
Q 043166 97 EISVSARVLEKKAPCNFLVFGLGHDSLMWSTL----N-YGGRTIFLEEDEAWIEQIRRRFPMLESYHVTYDSKVNQAENL 171 (295)
Q Consensus 97 Ei~~~~~VL~~raPCNfLVFGLg~dslmW~al----N-~gGrTvFLeEd~~~i~~v~~~~p~leay~V~Y~t~~~ea~~L 171 (295)
+|..+++.|.+. .+++|||-|+.......+ . .|-...++.+...+........++--..-+...-.-.+.-++
T Consensus 2 ~i~~~~~~i~~~--~~i~i~g~g~s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iS~~g~~~~~~~~ 79 (139)
T cd05013 2 ALEKAVDLLAKA--RRIYIFGVGSSGLVAEYLAYKLLRLGKPVVLLSDPHLQLMSAANLTPGDVVIAISFSGETKETVEA 79 (139)
T ss_pred HHHHHHHHHHhC--CEEEEEEcCchHHHHHHHHHHHHHcCCceEEecCHHHHHHHHHcCCCCCEEEEEeCCCCCHHHHHH
Confidence 466677777654 579999999866544422 2 344555555544444444444455444445555444556666
Q ss_pred HhhcCCCCCCC
Q 043166 172 MDVGKGPECTA 182 (295)
Q Consensus 172 L~~~r~~~C~p 182 (295)
++.++...++-
T Consensus 80 ~~~a~~~g~~i 90 (139)
T cd05013 80 AEIAKERGAKV 90 (139)
T ss_pred HHHHHHcCCeE
Confidence 66666545544
No 26
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=46.09 E-value=1.2e+02 Score=24.76 Aligned_cols=14 Identities=29% Similarity=0.700 Sum_probs=12.0
Q ss_pred ccEEEEeCCCCCCC
Q 043166 207 WDLIMVDAPTGYYE 220 (295)
Q Consensus 207 WDvImVDgP~Gy~~ 220 (295)
.|+|+||.|.|...
T Consensus 45 yd~VIiD~p~~~~~ 58 (139)
T cd02038 45 YDYIIIDTGAGISD 58 (139)
T ss_pred CCEEEEECCCCCCH
Confidence 89999999988754
No 27
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=46.09 E-value=6.5 Score=34.69 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=16.1
Q ss_pred ccCCChhhhcccccEEEEeCCCC
Q 043166 195 LKGLPAEVYDIKWDLIMVDAPTG 217 (295)
Q Consensus 195 l~~LP~evYe~~WDvImVDgP~G 217 (295)
+..|=+.+-+.+||+|+||+|.+
T Consensus 102 ~~~l~~~l~~~~yD~IIiD~pp~ 124 (217)
T cd02035 102 LLAVFREFSEGLYDVIVFDTAPT 124 (217)
T ss_pred HHHHHHHHhcCCCCEEEECCCCc
Confidence 44444444444699999999985
No 28
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=42.83 E-value=7.6 Score=35.39 Aligned_cols=13 Identities=15% Similarity=0.621 Sum_probs=10.9
Q ss_pred cccccEEEEeCCC
Q 043166 204 DIKWDLIMVDAPT 216 (295)
Q Consensus 204 e~~WDvImVDgP~ 216 (295)
+.+||+|+||+|.
T Consensus 122 ~~~yD~VVvDtpP 134 (254)
T cd00550 122 EAEYDVVVFDTAP 134 (254)
T ss_pred cCCCCEEEECCCC
Confidence 4589999999865
No 29
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=42.20 E-value=14 Score=34.69 Aligned_cols=16 Identities=31% Similarity=0.563 Sum_probs=13.9
Q ss_pred ccccEEEEeCCCCCCC
Q 043166 205 IKWDLIMVDAPTGYYE 220 (295)
Q Consensus 205 ~~WDvImVDgP~Gy~~ 220 (295)
-.||+|+||-|.|..|
T Consensus 116 ~~~~~iliD~P~g~~~ 131 (243)
T PF06564_consen 116 GPYDWILIDTPPGPSP 131 (243)
T ss_pred CCCCEEEEeCCCCCcH
Confidence 5699999999998765
No 30
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=41.76 E-value=17 Score=30.43 Aligned_cols=16 Identities=31% Similarity=0.432 Sum_probs=13.8
Q ss_pred ccccEEEEeCCCCCCC
Q 043166 205 IKWDLIMVDAPTGYYE 220 (295)
Q Consensus 205 ~~WDvImVDgP~Gy~~ 220 (295)
-++|+|+||.|.|+.+
T Consensus 91 ~~~d~viiDtpp~~~~ 106 (179)
T cd03110 91 EGAELIIIDGPPGIGC 106 (179)
T ss_pred cCCCEEEEECcCCCcH
Confidence 4789999999999864
No 31
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=41.02 E-value=33 Score=29.03 Aligned_cols=30 Identities=13% Similarity=0.118 Sum_probs=21.1
Q ss_pred CCchhhhhhhhhhhhccCCCCceEEEecCChh
Q 043166 223 PGRMTAIYTAGMMARNREDGDTDVFVHDVNRE 254 (295)
Q Consensus 223 PGRM~aIyTAavmAR~r~~g~TdVfVHDVdR~ 254 (295)
+|++++|.++---+.. .+.-.||||++|++
T Consensus 78 ~G~~~si~~gl~~~~~--~~~d~vlv~~~D~P 107 (190)
T TIGR03202 78 EGQAHSLKCGLRKAEA--MGADAVVILLADQP 107 (190)
T ss_pred hhHHHHHHHHHHHhcc--CCCCeEEEEeCCCC
Confidence 5899999987433222 23446999999986
No 32
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=39.26 E-value=20 Score=35.22 Aligned_cols=67 Identities=24% Similarity=0.510 Sum_probs=44.7
Q ss_pred hhcccc---cEEEEeCCCCCCCCCCCchhhhhhhhhhhhccCC-----CCceEEEecCChhHHHHHHHhhcccccccccc
Q 043166 202 VYDIKW---DLIMVDAPTGYYEEAPGRMTAIYTAGMMARNRED-----GDTDVFVHDVNREVEDNFSKAFLCEGYMKKQE 273 (295)
Q Consensus 202 vYe~~W---DvImVDgP~Gy~~eaPGRM~aIyTAavmAR~r~~-----g~TdVfVHDVdR~VE~~~s~eFLC~~nlv~~~ 273 (295)
+=+++| |+++||.|.|-..|== |..--+|.+.| -.-+|.+-||+|++. +|++.-+.-.
T Consensus 149 lk~vdwg~lDyLviDtPPGtsDehl-------s~~~~~~~~~gAviVTTPQ~vAl~Dv~K~i~-------fc~K~~I~il 214 (300)
T KOG3022|consen 149 LKDVDWGELDYLVIDTPPGTSDEHL-------SLVQFLRESDGAVIVTTPQEVALQDVRKEID-------FCRKAGIPIL 214 (300)
T ss_pred HhcCCCCCcCEEEEeCCCCCChhhh-------heeecccccCceEEEeCchhhhhHHHHhhhh-------hhhhcCCceE
Confidence 346788 9999999999877531 11112222212 145788999999998 7888877766
Q ss_pred c---ceeeeEec
Q 043166 274 G---RIRHFNIP 282 (295)
Q Consensus 274 G---rL~HF~Ip 282 (295)
| +.-+|+-|
T Consensus 215 GvVENMs~f~Cp 226 (300)
T KOG3022|consen 215 GVVENMSGFVCP 226 (300)
T ss_pred EEEeccccccCC
Confidence 6 55566665
No 33
>PHA02663 hypothetical protein; Provisional
Probab=38.69 E-value=19 Score=32.16 Aligned_cols=19 Identities=42% Similarity=0.601 Sum_probs=16.4
Q ss_pred CCCCCch-hhhhhhhhhhhc
Q 043166 220 EEAPGRM-TAIYTAGMMARN 238 (295)
Q Consensus 220 ~eaPGRM-~aIyTAavmAR~ 238 (295)
|.+|||| .||=--|.|.|-
T Consensus 82 ptspgrmvtavelcaqmgr~ 101 (172)
T PHA02663 82 PTSPGRMVTAVELCAQMGRL 101 (172)
T ss_pred CCCCcchhHHHHHHHHHHHH
Confidence 6799999 888888889885
No 34
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=38.22 E-value=17 Score=33.77 Aligned_cols=26 Identities=27% Similarity=0.574 Sum_probs=18.8
Q ss_pred ccccEEEEe-CCCCC---CCCCCCchhhhh
Q 043166 205 IKWDLIMVD-APTGY---YEEAPGRMTAIY 230 (295)
Q Consensus 205 ~~WDvImVD-gP~Gy---~~eaPGRM~aIy 230 (295)
-+||+|+|| +|+|. .=+.|.+|....
T Consensus 111 ~~yD~iVvDtaPtghtLrlL~lP~~l~~~l 140 (284)
T TIGR00345 111 NEFDVVIFDTAPTGHTLRLLQLPEVLSSFL 140 (284)
T ss_pred ccCCEEEECCCChHHHHHHHhhHHHHHHHH
Confidence 479999999 66776 346777776544
No 35
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=35.92 E-value=1.1e+02 Score=26.38 Aligned_cols=59 Identities=27% Similarity=0.255 Sum_probs=41.1
Q ss_pred cccHHHHHHHH-HHHhhcCCccEEeeccCchhh--hhhh-hccCCceeEeccChHHHHHHHhh
Q 043166 92 QQTLKEISVSA-RVLEKKAPCNFLVFGLGHDSL--MWST-LNYGGRTIFLEEDEAWIEQIRRR 150 (295)
Q Consensus 92 qqt~~Ei~~~~-~VL~~raPCNfLVFGLg~dsl--mW~a-lN~gGrTvFLeEd~~~i~~v~~~ 150 (295)
.+|.+|++.+. .-+.-+....+|.+|-|.-.+ .++. +..+|+-+-+|-++..++..+++
T Consensus 22 ~~t~~~~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n 84 (198)
T PRK00377 22 PMTKEEIRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRN 84 (198)
T ss_pred CCCHHHHHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH
Confidence 59999998765 223335667899999977554 3332 34567778889999988877654
No 36
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=35.76 E-value=21 Score=33.83 Aligned_cols=27 Identities=37% Similarity=0.540 Sum_probs=17.3
Q ss_pred cccccEEEEeCC-CCC---CCCCCCchhhhh
Q 043166 204 DIKWDLIMVDAP-TGY---YEEAPGRMTAIY 230 (295)
Q Consensus 204 e~~WDvImVDgP-~Gy---~~eaPGRM~aIy 230 (295)
+-+||+|+||+| +|. .-+.|.+|....
T Consensus 124 ~~~~D~IVvDt~ptg~tLrlL~lP~~l~~~l 154 (305)
T PF02374_consen 124 SGEYDLIVVDTPPTGHTLRLLSLPERLRWWL 154 (305)
T ss_dssp HCSTSEEEEESSSSHHHHHHHHHHHHHHHHH
T ss_pred hCCCCEEEECCCCcHHHHHHHhHHHHHHHHH
Confidence 579999999954 554 234555554433
No 37
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=34.44 E-value=15 Score=27.04 Aligned_cols=32 Identities=31% Similarity=0.596 Sum_probs=27.6
Q ss_pred cccccEEEEeCCCCCCCCCCCchhhhhhhhhhhhc
Q 043166 204 DIKWDLIMVDAPTGYYEEAPGRMTAIYTAGMMARN 238 (295)
Q Consensus 204 e~~WDvImVDgP~Gy~~eaPGRM~aIyTAavmAR~ 238 (295)
+-.|=.|-|+|| |...+.||.|+.|+++ ||.+
T Consensus 3 ~~~~~~i~v~g~-g~~~~~~Gv~a~i~~~--La~~ 34 (65)
T PF13840_consen 3 EEDWAKISVVGP-GLRFDVPGVAAKIFSA--LAEA 34 (65)
T ss_dssp ESEEEEEEEEEE-CGTTTSHHHHHHHHHH--HHHT
T ss_pred cCCEEEEEEEcc-ccCCCcccHHHHHHHH--HHHC
Confidence 457889999999 7777899999999988 7776
No 38
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=34.35 E-value=14 Score=34.34 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=17.1
Q ss_pred ccCCChhhhcccccEEEEeCCCCCC
Q 043166 195 LKGLPAEVYDIKWDLIMVDAPTGYY 219 (295)
Q Consensus 195 l~~LP~evYe~~WDvImVDgP~Gy~ 219 (295)
++.|=.++..-+.|+|+||+|.|-.
T Consensus 155 ~~qll~~~~~~~~D~vIID~PP~~g 179 (265)
T COG0489 155 MLQLLEDVLWGEYDYVIIDTPPGTG 179 (265)
T ss_pred HHHHHHHHhccCCCEEEEeCCCCch
Confidence 4444445555556799999999864
No 39
>PF13538 UvrD_C_2: UvrD-like helicase C-terminal domain; PDB: 1W36_G 3K70_G 3DMN_A 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=34.25 E-value=8.9 Score=29.11 Aligned_cols=33 Identities=21% Similarity=0.555 Sum_probs=21.2
Q ss_pred cccccEEEEeCCCCC-CCCCCCchhhhhhhhhhhhccC
Q 043166 204 DIKWDLIMVDAPTGY-YEEAPGRMTAIYTAGMMARNRE 240 (295)
Q Consensus 204 e~~WDvImVDgP~Gy-~~eaPGRM~aIyTAavmAR~r~ 240 (295)
..|||.++|+.|... .++.-- --.||| |-|+|+
T Consensus 66 Gle~d~V~v~~~~~~~~~~~~~--~~lYva--~TRA~~ 99 (104)
T PF13538_consen 66 GLEFDAVIVVDPDSSNFDELSR--RLLYVA--ITRAKH 99 (104)
T ss_dssp T--EEEEEEEEGGGGSGCGCHH--HHHHHH--HTTEEE
T ss_pred CccccEEEEEcCCcccCCchhh--ccEEee--HhHhhh
Confidence 468999999988877 222222 239999 788753
No 40
>KOG4417 consensus Predicted endonuclease [General function prediction only]
Probab=34.13 E-value=21 Score=34.10 Aligned_cols=25 Identities=36% Similarity=0.603 Sum_probs=19.9
Q ss_pred ccCCChhhhcccccEEEEeC-----CCCCC
Q 043166 195 LKGLPAEVYDIKWDLIMVDA-----PTGYY 219 (295)
Q Consensus 195 l~~LP~evYe~~WDvImVDg-----P~Gy~ 219 (295)
|+..|.|=.+..=||||||| |+|+.
T Consensus 104 L~~v~~erh~fr~dvilvDGnG~lHprGfG 133 (261)
T KOG4417|consen 104 LKSVITERHEFRPDVILVDGNGELHPRGFG 133 (261)
T ss_pred HHhcccccCCccccEEEEcCCceEcccccc
Confidence 46777777777799999998 77774
No 41
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=34.01 E-value=23 Score=31.43 Aligned_cols=14 Identities=29% Similarity=0.679 Sum_probs=11.9
Q ss_pred ccccEEEEeCCCCC
Q 043166 205 IKWDLIMVDAPTGY 218 (295)
Q Consensus 205 ~~WDvImVDgP~Gy 218 (295)
-+||+|+||.|.+.
T Consensus 118 ~~yD~iiID~pp~l 131 (259)
T COG1192 118 DDYDYIIIDTPPSL 131 (259)
T ss_pred cCCCEEEECCCCch
Confidence 37999999999754
No 42
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=33.19 E-value=2e+02 Score=25.48 Aligned_cols=72 Identities=15% Similarity=0.126 Sum_probs=48.8
Q ss_pred hhcCCCCccccHHHHHHHHHHHhhc-CCccEEeeccCchhhhh--hhhccCCceeEeccChHHHHHHHhhCCCce
Q 043166 84 YSTSTITPQQTLKEISVSARVLEKK-APCNFLVFGLGHDSLMW--STLNYGGRTIFLEEDEAWIEQIRRRFPMLE 155 (295)
Q Consensus 84 Yatsn~tpqqt~~Ei~~~~~VL~~r-aPCNfLVFGLg~dslmW--~alN~gGrTvFLeEd~~~i~~v~~~~p~le 155 (295)
|.-.|.+.+.-.+++..+.++|.+. .+-.+|=+|=|....+- +...+++.-+=+|-++..++.++++.|+++
T Consensus 17 ~~~rn~~~~~~~~~~~~~~~~l~~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~ 91 (204)
T TIGR03587 17 YIDRNSRQSLVAAKLAMFARALNRLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNIN 91 (204)
T ss_pred hhhccccHHHHHHHHHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCc
Confidence 4444544444466788888888774 56679999887765443 333345666668889999998888766543
No 43
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=32.65 E-value=26 Score=30.32 Aligned_cols=17 Identities=29% Similarity=0.606 Sum_probs=14.3
Q ss_pred ccccEEEEeCCCCCCCC
Q 043166 205 IKWDLIMVDAPTGYYEE 221 (295)
Q Consensus 205 ~~WDvImVDgP~Gy~~e 221 (295)
-..|+|+||+|.|+.+.
T Consensus 107 ~~yD~VIiD~p~~~~~~ 123 (251)
T TIGR01969 107 DDTDFLLIDAPAGLERD 123 (251)
T ss_pred hhCCEEEEeCCCccCHH
Confidence 36899999999998653
No 44
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=32.18 E-value=1.9e+02 Score=27.61 Aligned_cols=118 Identities=17% Similarity=0.148 Sum_probs=63.8
Q ss_pred CCccccHHHHHHHHHHHhhcCCccEEeeccCchhhh-hhhh--ccCCceeEec-cChHHHHHHHhhCC--CceeEEeeec
Q 043166 89 ITPQQTLKEISVSARVLEKKAPCNFLVFGLGHDSLM-WSTL--NYGGRTIFLE-EDEAWIEQIRRRFP--MLESYHVTYD 162 (295)
Q Consensus 89 ~tpqqt~~Ei~~~~~VL~~raPCNfLVFGLg~dslm-W~al--N~gGrTvFLe-Ed~~~i~~v~~~~p--~leay~V~Y~ 162 (295)
.|.--|.+==.+..+.|.++.+-++.|||.|.+.-. ..++ -...+.|++- -+++-.+.+.++.. +++ |.
T Consensus 107 lT~~RTaA~salaa~~La~~~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~---v~-- 181 (325)
T TIGR02371 107 ITDMRTGAAGGVAAKYLARKDSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVP---VR-- 181 (325)
T ss_pred hhhHHHHHHHHHHHHHhCCCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCc---EE--
Confidence 334455555566678899889999999999998763 2232 2467777773 33333333333221 211 11
Q ss_pred chhhhHHHHHhhcC-CCCCCCCCCC------CCcccc--------ccccCCChhhhcccccEEEEeC
Q 043166 163 SKVNQAENLMDVGK-GPECTAIGDP------KYSMCQ--------LALKGLPAEVYDIKWDLIMVDA 214 (295)
Q Consensus 163 t~~~ea~~LL~~~r-~~~C~p~~~~------~~S~Ck--------LAl~~LP~evYe~~WDvImVDg 214 (295)
.+.+.+++++.+. =--|.|...+ ....+- -..+.||.++++.. + |+||-
T Consensus 182 -~~~~~~eav~~aDiVitaT~s~~P~~~~~~l~~g~~v~~vGs~~p~~~Eld~~~l~~a-~-v~vD~ 245 (325)
T TIGR02371 182 -AATDPREAVEGCDILVTTTPSRKPVVKADWVSEGTHINAIGADAPGKQELDPEILKNA-K-IFVDD 245 (325)
T ss_pred -EeCCHHHHhccCCEEEEecCCCCcEecHHHcCCCCEEEecCCCCcccccCCHHHHhcC-c-EEECC
Confidence 1345556665444 1124432221 122222 23678888888877 6 45773
No 45
>COG1278 CspC Cold shock proteins [Transcription]
Probab=32.03 E-value=28 Score=27.20 Aligned_cols=10 Identities=70% Similarity=1.072 Sum_probs=8.6
Q ss_pred CCCceEEEec
Q 043166 241 DGDTDVFVHD 250 (295)
Q Consensus 241 ~g~TdVfVHD 250 (295)
+|.-|||||.
T Consensus 22 ~G~~DvFVH~ 31 (67)
T COG1278 22 DGGKDVFVHI 31 (67)
T ss_pred CCCcCEEEEe
Confidence 5789999995
No 46
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=31.95 E-value=4.3e+02 Score=24.65 Aligned_cols=117 Identities=24% Similarity=0.371 Sum_probs=72.1
Q ss_pred ChhHHHhhhhhhcCCCCccccHHHHHHHHHHHhh-cCCccEEeeccCc-hhhhhhhhc--cCCceeEeccChHHHHHHHh
Q 043166 74 PRSLAQALIHYSTSTITPQQTLKEISVSARVLEK-KAPCNFLVFGLGH-DSLMWSTLN--YGGRTIFLEEDEAWIEQIRR 149 (295)
Q Consensus 74 P~~v~~AlvhYatsn~tpqqt~~Ei~~~~~VL~~-raPCNfLVFGLg~-dslmW~alN--~gGrTvFLeEd~~~i~~v~~ 149 (295)
+..+.+-+-.+|.-+..|.+- .|-......|.+ +.|=+.|=+|=+- =|.+|.+.+ +.|+-+=+|=|+++++..++
T Consensus 24 ~~~~~~~~~e~a~~~~~pi~~-~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~ 102 (219)
T COG4122 24 PPALLAELEEFARENGVPIID-PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARE 102 (219)
T ss_pred CchHHHHHHHHhHhcCCCCCC-hhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHH
Confidence 556677777788777777666 444444455444 7899999997533 356666655 36888888888888776654
Q ss_pred hCCC---ceeEEeeecchhhhHHHHHhhcCCCCCCCCCCCCCccccccccCCChhhhcccccEEEEeCCCCCCCC
Q 043166 150 RFPM---LESYHVTYDSKVNQAENLMDVGKGPECTAIGDPKYSMCQLALKGLPAEVYDIKWDLIMVDAPTGYYEE 221 (295)
Q Consensus 150 ~~p~---leay~V~Y~t~~~ea~~LL~~~r~~~C~p~~~~~~S~CkLAl~~LP~evYe~~WDvImVDgP~Gy~~e 221 (295)
..-. -+.-.+... -+|-+.|+ + ...-.+|+|.||+=++.+|+
T Consensus 103 n~~~ag~~~~i~~~~~---gdal~~l~--------------------------~-~~~~~fDliFIDadK~~yp~ 147 (219)
T COG4122 103 NLAEAGVDDRIELLLG---GDALDVLS--------------------------R-LLDGSFDLVFIDADKADYPE 147 (219)
T ss_pred HHHHcCCcceEEEEec---CcHHHHHH--------------------------h-ccCCCccEEEEeCChhhCHH
Confidence 3211 111111110 23333333 1 23457999999999998884
No 47
>COG5639 Uncharacterized conserved small protein [Function unknown]
Probab=30.97 E-value=49 Score=26.76 Aligned_cols=54 Identities=26% Similarity=0.415 Sum_probs=40.1
Q ss_pred CCCChhHHHhhhhhhc-CCCCccccHHHHHHHHHHHhhcCCccEEeeccCchhhhhhhhccCCceeEeccChHHHHHHHh
Q 043166 71 TKIPRSLAQALIHYST-STITPQQTLKEISVSARVLEKKAPCNFLVFGLGHDSLMWSTLNYGGRTIFLEEDEAWIEQIRR 149 (295)
Q Consensus 71 ~~lP~~v~~AlvhYat-sn~tpqqt~~Ei~~~~~VL~~raPCNfLVFGLg~dslmW~alN~gGrTvFLeEd~~~i~~v~~ 149 (295)
-.+|+++-++|..||. -+.|.-++..-..++.-.|.+ ||+.|..++..-++
T Consensus 19 v~~pa~L~~~L~~Yaai~~~t~Ge~~~~a~Lia~MLe~----------------------------Fla~DR~F~kark~ 70 (77)
T COG5639 19 VELPASLHRALDDYAAIYAQTYGESATPATLIAHMLEA----------------------------FLAGDRGFAKARKK 70 (77)
T ss_pred EecChhHHHHHHHHHHHHHHhhccccCHHHHHHHHHHH----------------------------HHhccHHHHHHHHh
Confidence 3589999999999995 344444566667778888887 99999988765554
Q ss_pred hCC
Q 043166 150 RFP 152 (295)
Q Consensus 150 ~~p 152 (295)
..|
T Consensus 71 ~~p 73 (77)
T COG5639 71 AAP 73 (77)
T ss_pred cCC
Confidence 443
No 48
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=30.78 E-value=49 Score=27.05 Aligned_cols=14 Identities=64% Similarity=0.966 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHH
Q 043166 13 VLLLGIFLAFLLLF 26 (295)
Q Consensus 13 ~il~~~~~~~~ll~ 26 (295)
+|||++++|.+||+
T Consensus 6 ~llL~l~LA~lLli 19 (95)
T PF07172_consen 6 FLLLGLLLAALLLI 19 (95)
T ss_pred HHHHHHHHHHHHHH
Confidence 46666655544443
No 49
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=30.76 E-value=2.3e+02 Score=25.89 Aligned_cols=69 Identities=22% Similarity=0.418 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhhcCCccEEee---ccCch-----hhhhhhhcc----CC-ceeEeccChHHHHHHHhhCCCceeEEeeec
Q 043166 96 KEISVSARVLEKKAPCNFLVF---GLGHD-----SLMWSTLNY----GG-RTIFLEEDEAWIEQIRRRFPMLESYHVTYD 162 (295)
Q Consensus 96 ~Ei~~~~~VL~~raPCNfLVF---GLg~d-----slmW~alN~----gG-rTvFLeEd~~~i~~v~~~~p~leay~V~Y~ 162 (295)
.|++.++.+|++-.+-.|+++ |-|-+ ++.|+-+++ .| .+||..-+.+..+..+...+.++-||+.|.
T Consensus 96 ~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~~~~~~~~~v~~~~~~~~ 175 (222)
T cd03287 96 VELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGEILRRFEGSIRNYHMSYL 175 (222)
T ss_pred HHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHHHHHHhcccCeEEEEEEEE
Confidence 599999999987666566664 43433 556766654 35 555555666655444343467899999997
Q ss_pred ch
Q 043166 163 SK 164 (295)
Q Consensus 163 t~ 164 (295)
+.
T Consensus 176 ~~ 177 (222)
T cd03287 176 ES 177 (222)
T ss_pred Ee
Confidence 53
No 50
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=30.64 E-value=32 Score=27.14 Aligned_cols=12 Identities=25% Similarity=0.337 Sum_probs=10.9
Q ss_pred cEEEEeCCCCCC
Q 043166 208 DLIMVDAPTGYY 219 (295)
Q Consensus 208 DvImVDgP~Gy~ 219 (295)
|+|+||.|.|+.
T Consensus 44 D~IIiDtpp~~~ 55 (106)
T cd03111 44 DYVVVDLGRSLD 55 (106)
T ss_pred CEEEEeCCCCcC
Confidence 999999999875
No 51
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=30.53 E-value=97 Score=23.85 Aligned_cols=105 Identities=16% Similarity=0.296 Sum_probs=63.0
Q ss_pred EEeeccCchhh-hhhhhccCC-ceeEeccChHHHHHHHhhCCCceeEEeeecchhhhHHHHHhhcCCCCCCCCCCCCCcc
Q 043166 113 FLVFGLGHDSL-MWSTLNYGG-RTIFLEEDEAWIEQIRRRFPMLESYHVTYDSKVNQAENLMDVGKGPECTAIGDPKYSM 190 (295)
Q Consensus 113 fLVFGLg~dsl-mW~alN~gG-rTvFLeEd~~~i~~v~~~~p~leay~V~Y~t~~~ea~~LL~~~r~~~C~p~~~~~~S~ 190 (295)
++|+|.|.-.. +-..|..+| +-+.+|.|+..+..+++.. +++-|-.. .+-+ .|+.+.-.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~-----~~~i~gd~-~~~~-~l~~a~i~------------ 61 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG-----VEVIYGDA-TDPE-VLERAGIE------------ 61 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT-----SEEEES-T-TSHH-HHHHTTGG------------
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc-----cccccccc-hhhh-HHhhcCcc------------
Confidence 57899987543 445677788 7999999999999998877 44444322 2222 23322211
Q ss_pred ccccccCCChhhhcccccEEEEeCCCCCCCCCCCchhhhhhhhhhhhccCCCCceEEEecCChhHHHHHHH
Q 043166 191 CQLALKGLPAEVYDIKWDLIMVDAPTGYYEEAPGRMTAIYTAGMMARNREDGDTDVFVHDVNREVEDNFSK 261 (295)
Q Consensus 191 CkLAl~~LP~evYe~~WDvImVDgP~Gy~~eaPGRM~aIyTAavmAR~r~~g~TdVfVHDVdR~VE~~~s~ 261 (295)
+=|.|++..+. + ..-..++.+||.. .+...|+++=-|+.-++.+..
T Consensus 62 ---------------~a~~vv~~~~~---d------~~n~~~~~~~r~~-~~~~~ii~~~~~~~~~~~l~~ 107 (116)
T PF02254_consen 62 ---------------KADAVVILTDD---D------EENLLIALLAREL-NPDIRIIARVNDPENAELLRQ 107 (116)
T ss_dssp ---------------CESEEEEESSS---H------HHHHHHHHHHHHH-TTTSEEEEEESSHHHHHHHHH
T ss_pred ---------------ccCEEEEccCC---H------HHHHHHHHHHHHH-CCCCeEEEEECCHHHHHHHHH
Confidence 11345555542 1 4455566667653 345778888777777776643
No 52
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=30.20 E-value=3.4e+02 Score=24.83 Aligned_cols=70 Identities=17% Similarity=0.279 Sum_probs=33.9
Q ss_pred CCCChhHHHhhhhhhcCCCCcccc--HHHH-HHHHHHHhhcCCccEEeeccCchh---hhhhhhccCCceeEeccCh
Q 043166 71 TKIPRSLAQALIHYSTSTITPQQT--LKEI-SVSARVLEKKAPCNFLVFGLGHDS---LMWSTLNYGGRTIFLEEDE 141 (295)
Q Consensus 71 ~~lP~~v~~AlvhYatsn~tpqqt--~~Ei-~~~~~VL~~raPCNfLVFGLg~ds---lmW~alN~gGrTvFLeEd~ 141 (295)
.++|..|.+|+..+..+...+... .+|+ ..+++.+....+=+.++.|=|.+. .+++-+++ |++|.+.++.
T Consensus 8 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~~~~t~al~~~~~~~~~~-g~~vl~~~~~ 83 (356)
T cd06451 8 SNVPPRVLKAMNRPMLGHRSPEFLALMDEILEGLRYVFQTENGLTFLLSGSGTGAMEAALSNLLEP-GDKVLVGVNG 83 (356)
T ss_pred cCCCHHHHHHhCCCccCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHHHHHHhCCC-CCEEEEecCC
Confidence 467888888886654332222222 2222 223333332222235555655554 33444455 5677766543
No 53
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=29.96 E-value=32 Score=29.89 Aligned_cols=16 Identities=25% Similarity=0.673 Sum_probs=13.3
Q ss_pred ccccEEEEeCCCCCCC
Q 043166 205 IKWDLIMVDAPTGYYE 220 (295)
Q Consensus 205 ~~WDvImVDgP~Gy~~ 220 (295)
-+.|+|+||+|.|...
T Consensus 110 ~~~D~viiD~p~~~~~ 125 (261)
T TIGR01968 110 EEFDYVIIDCPAGIES 125 (261)
T ss_pred HhCCEEEEeCCCCcCH
Confidence 3689999999998754
No 54
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=29.79 E-value=31 Score=28.46 Aligned_cols=15 Identities=33% Similarity=0.851 Sum_probs=13.2
Q ss_pred ccEEEEeCCCCCCCC
Q 043166 207 WDLIMVDAPTGYYEE 221 (295)
Q Consensus 207 WDvImVDgP~Gy~~e 221 (295)
-|+|+||+|.|....
T Consensus 95 yD~iiiD~~~~~~~~ 109 (195)
T PF01656_consen 95 YDYIIIDTPPGLSDP 109 (195)
T ss_dssp SSEEEEEECSSSSHH
T ss_pred ccceeecccccccHH
Confidence 899999999988664
No 55
>PRK00536 speE spermidine synthase; Provisional
Probab=29.76 E-value=1.3e+02 Score=28.54 Aligned_cols=52 Identities=19% Similarity=0.211 Sum_probs=42.6
Q ss_pred HHhhcCCccEEeeccCchhhhhhhhccCCceeEeccChHHHHHHHhhCCCce
Q 043166 104 VLEKKAPCNFLVFGLGHDSLMWSTLNYGGRTIFLEEDEAWIEQIRRRFPMLE 155 (295)
Q Consensus 104 VL~~raPCNfLVFGLg~dslmW~alN~gGrTvFLeEd~~~i~~v~~~~p~le 155 (295)
.+.+..|=|.||.|=|-.-.+=.-|.|..+-+.+|=|+.-|+-.++=.|.+.
T Consensus 67 l~~h~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~ 118 (262)
T PRK00536 67 GCTKKELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFH 118 (262)
T ss_pred HhhCCCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHH
Confidence 3455789999999998888888888887789999999998888887777654
No 56
>PHA02518 ParA-like protein; Provisional
Probab=29.37 E-value=31 Score=29.07 Aligned_cols=14 Identities=21% Similarity=0.377 Sum_probs=11.9
Q ss_pred ccccEEEEeCCCCC
Q 043166 205 IKWDLIMVDAPTGY 218 (295)
Q Consensus 205 ~~WDvImVDgP~Gy 218 (295)
-.+|+|+||.|.|.
T Consensus 75 ~~~d~viiD~p~~~ 88 (211)
T PHA02518 75 SGYDYVVVDGAPQD 88 (211)
T ss_pred ccCCEEEEeCCCCc
Confidence 45899999999875
No 57
>PLN03181 glycosyltransferase; Provisional
Probab=29.18 E-value=1.2e+02 Score=31.43 Aligned_cols=22 Identities=41% Similarity=0.582 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHhhccCC
Q 043166 13 VLLLGIFLAFLLLFVVRSSLSL 34 (295)
Q Consensus 13 ~il~~~~~~~~ll~~~rt~~~~ 34 (295)
+.+.+++++++|++.+.|.+++
T Consensus 34 ~f~~ga~~a~ll~~~~~s~~~~ 55 (453)
T PLN03181 34 LFLGGAVVAFLLVWSLASILSP 55 (453)
T ss_pred HHHHHHHHHHHHHHHHHhhcCC
Confidence 3455888888888888885544
No 58
>cd01399 GlcN6P_deaminase GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium. The reaction is an aldo-keto isomerization coupled with an amination or deamination. It is the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate (GlcNAc6P). GlcN6P deaminase is a hexameric enzyme that is allosterically activated by GlcNAc6P.
Probab=28.54 E-value=77 Score=27.68 Aligned_cols=29 Identities=10% Similarity=0.253 Sum_probs=24.5
Q ss_pred cHHHHHHHHHHHhhcCCccEEeeccCchh
Q 043166 94 TLKEISVSARVLEKKAPCNFLVFGLGHDS 122 (295)
Q Consensus 94 t~~Ei~~~~~VL~~raPCNfLVFGLg~ds 122 (295)
...+......+|++..++.+.|+|+|.|.
T Consensus 100 ~~~~~~~~~~~l~~~~~~Dl~llGiG~dg 128 (232)
T cd01399 100 LEAECRRYEALIAEAGGIDLQLLGIGENG 128 (232)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCc
Confidence 45677778889988889999999999975
No 59
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=28.49 E-value=2.1e+02 Score=21.58 Aligned_cols=57 Identities=19% Similarity=0.256 Sum_probs=35.5
Q ss_pred ccHHHHHH-HHHHHhhcCCccEEeeccCchhhhhhhhcc--CCceeEeccChHHHHHHHh
Q 043166 93 QTLKEISV-SARVLEKKAPCNFLVFGLGHDSLMWSTLNY--GGRTIFLEEDEAWIEQIRR 149 (295)
Q Consensus 93 qt~~Ei~~-~~~VL~~raPCNfLVFGLg~dslmW~alN~--gGrTvFLeEd~~~i~~v~~ 149 (295)
|+..|+.. +...+.-...-++|-+|-|.-...+...+. +++-+-+|-++..++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~ 61 (124)
T TIGR02469 2 MTKREVRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIER 61 (124)
T ss_pred CchHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHH
Confidence 45556544 333332223347999999888877766553 4677778877777766654
No 60
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=27.65 E-value=65 Score=31.66 Aligned_cols=32 Identities=25% Similarity=0.584 Sum_probs=27.5
Q ss_pred hhhhhccCCceeEe------ccChHHHHHHHhhCCCce
Q 043166 124 MWSTLNYGGRTIFL------EEDEAWIEQIRRRFPMLE 155 (295)
Q Consensus 124 mW~alN~gGrTvFL------eEd~~~i~~v~~~~p~le 155 (295)
.|..|++||+-||- ||++.=|+.+.++||+.+
T Consensus 354 a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~~~~~~~ 391 (426)
T TIGR00563 354 IWPLLKTGGTLVYATCSVLPEENSEQIKAFLQEHPDFP 391 (426)
T ss_pred HHHhcCCCcEEEEEeCCCChhhCHHHHHHHHHhCCCCe
Confidence 56779999998876 699999999999999864
No 61
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=27.35 E-value=1.2e+02 Score=28.08 Aligned_cols=86 Identities=13% Similarity=0.146 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhhcCCccEEeeccCchhh----hhhhhccCCceeEeccChHHHH-HHHhhCCCceeEEeeecchhhhHHH
Q 043166 96 KEISVSARVLEKKAPCNFLVFGLGHDSL----MWSTLNYGGRTIFLEEDEAWIE-QIRRRFPMLESYHVTYDSKVNQAEN 170 (295)
Q Consensus 96 ~Ei~~~~~VL~~raPCNfLVFGLg~dsl----mW~alN~gGrTvFLeEd~~~i~-~v~~~~p~leay~V~Y~t~~~ea~~ 170 (295)
.+|..+.+.|.+ +.=++.+||.|.... +|..|++-|..+++.++..... ....-.++--..-+.|.-.-++.-+
T Consensus 34 ~~l~~~~~~l~~-a~~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~I~iS~sG~t~~~~~ 112 (326)
T PRK10892 34 QDFTLACEKMFW-CKGKVVVMGMGKSGHIGRKMAATFASTGTPSFFVHPGEAAHGDLGMVTPQDVVIAISNSGESSEILA 112 (326)
T ss_pred HHHHHHHHHHHh-cCCeEEEEeCcHhHHHHHHHHHHHhcCCceeEEeChHHhhccccccCCCCCEEEEEeCCCCCHHHHH
Confidence 367777777664 222599999997765 5778899999888865554332 2222233334555777777777788
Q ss_pred HHhhcCCCCCCC
Q 043166 171 LMDVGKGPECTA 182 (295)
Q Consensus 171 LL~~~r~~~C~p 182 (295)
+++.+++..|.-
T Consensus 113 ~~~~ak~~g~~v 124 (326)
T PRK10892 113 LIPVLKRLHVPL 124 (326)
T ss_pred HHHHHHHCCCcE
Confidence 888887555543
No 62
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=27.14 E-value=1.5e+02 Score=22.31 Aligned_cols=40 Identities=25% Similarity=0.302 Sum_probs=29.9
Q ss_pred cEEeeccCchhhhh--hhhccCCceeEeccChHHHHHHHhhC
Q 043166 112 NFLVFGLGHDSLMW--STLNYGGRTIFLEEDEAWIEQIRRRF 151 (295)
Q Consensus 112 NfLVFGLg~dslmW--~alN~gGrTvFLeEd~~~i~~v~~~~ 151 (295)
++|-.|-|.-.... +...+|++-+=+|-||..++.++++.
T Consensus 4 ~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~ 45 (112)
T PF12847_consen 4 RVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERA 45 (112)
T ss_dssp EEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHH
T ss_pred EEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHH
Confidence 46777766555544 44448999999999999999888766
No 63
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=27.14 E-value=1.5e+02 Score=27.53 Aligned_cols=43 Identities=14% Similarity=0.185 Sum_probs=33.1
Q ss_pred ChHHHHHHHhhCCCceeEEeeecchhhhHHHHHhhcC---CCCCCC
Q 043166 140 DEAWIEQIRRRFPMLESYHVTYDSKVNQAENLMDVGK---GPECTA 182 (295)
Q Consensus 140 d~~~i~~v~~~~p~leay~V~Y~t~~~ea~~LL~~~r---~~~C~p 182 (295)
+.+.++.+.+..+.-..+.+.-.+.+.|.-.||+.++ ++|--|
T Consensus 226 e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~a~l~Vs~DSGp 271 (344)
T TIGR02201 226 ELAMVNEIAQGCQTPRVTSLAGKLTLPQLAALIDHARLFIGVDSVP 271 (344)
T ss_pred HHHHHHHHHhhCCCCcccccCCCCCHHHHHHHHHhCCEEEecCCHH
Confidence 4456778877666556677778889999999999988 777665
No 64
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=26.83 E-value=36 Score=28.40 Aligned_cols=15 Identities=27% Similarity=0.459 Sum_probs=12.9
Q ss_pred ccccEEEEeCCCCCC
Q 043166 205 IKWDLIMVDAPTGYY 219 (295)
Q Consensus 205 ~~WDvImVDgP~Gy~ 219 (295)
-+-|+|+||+|.|+.
T Consensus 66 ~~yD~VIiD~pp~~~ 80 (169)
T cd02037 66 GELDYLVIDMPPGTG 80 (169)
T ss_pred CCCCEEEEeCCCCCc
Confidence 478999999999865
No 65
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=26.31 E-value=1.2e+02 Score=25.14 Aligned_cols=21 Identities=24% Similarity=0.426 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHhhccCC
Q 043166 14 LLLGIFLAFLLLFVVRSSLSL 34 (295)
Q Consensus 14 il~~~~~~~~ll~~~rt~~~~ 34 (295)
||+++.+..||++++-+++-.
T Consensus 30 ILivLVIIiLlImlfqsSS~~ 50 (85)
T PF10717_consen 30 ILIVLVIIILLIMLFQSSSNG 50 (85)
T ss_pred HHHHHHHHHHHHHHHhccCCC
Confidence 666666666666666554433
No 66
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=26.00 E-value=1.3e+02 Score=26.02 Aligned_cols=32 Identities=22% Similarity=0.308 Sum_probs=23.8
Q ss_pred CCccEEeeccCchhhhhhhhccCCceeEeccC
Q 043166 109 APCNFLVFGLGHDSLMWSTLNYGGRTIFLEED 140 (295)
Q Consensus 109 aPCNfLVFGLg~dslmW~alN~gGrTvFLeEd 140 (295)
..+.+++.|=|-|+..|.--++.|...|.|=|
T Consensus 78 ~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD 109 (183)
T PF04072_consen 78 GARQVVNLGAGLDTRAYRLDNPAGGVRWFEVD 109 (183)
T ss_dssp TESEEEEET-TT--HHHHHHHTTTTEEEEEEE
T ss_pred CCcEEEEcCCCCCchHHHhhccccceEEEEeC
Confidence 34599999999999999999987777777744
No 67
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=25.86 E-value=44 Score=27.59 Aligned_cols=16 Identities=25% Similarity=0.584 Sum_probs=13.1
Q ss_pred ccccEEEEeCCCCCCC
Q 043166 205 IKWDLIMVDAPTGYYE 220 (295)
Q Consensus 205 ~~WDvImVDgP~Gy~~ 220 (295)
.+-|+|+||||.|...
T Consensus 98 ~~~D~viid~~g~~~~ 113 (166)
T TIGR00347 98 QKYDFVLVEGAGGLCV 113 (166)
T ss_pred hcCCEEEEEcCCcccc
Confidence 4679999999998654
No 68
>PF10038 DUF2274: Protein of unknown function (DUF2274); InterPro: IPR018733 Members of this family of hypothetical bacterial proteins have no known function.
Probab=25.23 E-value=51 Score=25.94 Aligned_cols=37 Identities=22% Similarity=0.346 Sum_probs=28.4
Q ss_pred CCCCChhHHHhhhhhhc--CCCCccccHHHHHHHHHHHhh
Q 043166 70 CTKIPRSLAQALIHYST--STITPQQTLKEISVSARVLEK 107 (295)
Q Consensus 70 c~~lP~~v~~AlvhYat--sn~tpqqt~~Ei~~~~~VL~~ 107 (295)
+-.||+++...|+.||. +..+.+. .+-.+++.-.|++
T Consensus 18 ti~lpa~l~rdL~~Ya~~~~~~~g~~-~~~~~Li~~MLer 56 (69)
T PF10038_consen 18 TIELPASLHRDLVAYAEALAREYGQA-ADPAKLIPPMLER 56 (69)
T ss_pred EEeCCHHHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHH
Confidence 45799999999999995 4555555 6667777788877
No 69
>PRK11670 antiporter inner membrane protein; Provisional
Probab=25.10 E-value=45 Score=32.59 Aligned_cols=16 Identities=25% Similarity=0.484 Sum_probs=13.3
Q ss_pred ccccEEEEeCCCCCCC
Q 043166 205 IKWDLIMVDAPTGYYE 220 (295)
Q Consensus 205 ~~WDvImVDgP~Gy~~ 220 (295)
-++|+|+||.|.|...
T Consensus 214 ~~yDyvIID~PPg~gd 229 (369)
T PRK11670 214 PDLDYLVLDMPPGTGD 229 (369)
T ss_pred ccCCEEEEeCCCCCch
Confidence 3689999999998654
No 70
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=24.74 E-value=5.2e+02 Score=26.50 Aligned_cols=119 Identities=17% Similarity=0.186 Sum_probs=69.9
Q ss_pred HHHHhhcCCccEEeeccC-chhhhhhhhc-cC-CceeEeccChHHHHHHHhhCCCceeEEeeecchhhhHHHHHhhcC-C
Q 043166 102 ARVLEKKAPCNFLVFGLG-HDSLMWSTLN-YG-GRTIFLEEDEAWIEQIRRRFPMLESYHVTYDSKVNQAENLMDVGK-G 177 (295)
Q Consensus 102 ~~VL~~raPCNfLVFGLg-~dslmW~alN-~g-GrTvFLeEd~~~i~~v~~~~p~leay~V~Y~t~~~ea~~LL~~~r-~ 177 (295)
.+.+....=.|+||.|-| --.+.-+.|= +| .+-.+.--+......+.+++. +. -..+.|..+.|..++ -
T Consensus 170 ~~~~~~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~---~~----~~~l~el~~~l~~~DvV 242 (414)
T COG0373 170 KRIFGSLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLG---AE----AVALEELLEALAEADVV 242 (414)
T ss_pred HHHhcccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhC---Ce----eecHHHHHHhhhhCCEE
Confidence 333344567899999999 4444444444 44 467777788888888888776 22 233445555555555 1
Q ss_pred CCCCC--CCCCCCccccccccCCChhhhcccccEEEEe--CCCCCCCCCCCchhhhhhhhhhhhccCCCCceEEEecCCh
Q 043166 178 PECTA--IGDPKYSMCQLALKGLPAEVYDIKWDLIMVD--APTGYYEEAPGRMTAIYTAGMMARNREDGDTDVFVHDVNR 253 (295)
Q Consensus 178 ~~C~p--~~~~~~S~CkLAl~~LP~evYe~~WDvImVD--gP~Gy~~eaPGRM~aIyTAavmAR~r~~g~TdVfVHDVdR 253 (295)
=.|.. -.-+..+.+.=| +..-+| ++||| -||---|+. ++-+||+|+|||.
T Consensus 243 issTsa~~~ii~~~~ve~a-------~~~r~~-~livDiavPRdie~~v------------------~~l~~v~l~~iDD 296 (414)
T COG0373 243 ISSTSAPHPIITREMVERA-------LKIRKR-LLIVDIAVPRDVEPEV------------------GELPNVFLYTIDD 296 (414)
T ss_pred EEecCCCccccCHHHHHHH-------HhcccC-eEEEEecCCCCCCccc------------------cCcCCeEEEehhh
Confidence 11222 112345544443 445556 99999 576433311 1247899999985
No 71
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=24.61 E-value=44 Score=29.05 Aligned_cols=14 Identities=29% Similarity=0.589 Sum_probs=11.8
Q ss_pred ccEEEEeCCCCCCC
Q 043166 207 WDLIMVDAPTGYYE 220 (295)
Q Consensus 207 WDvImVDgP~Gy~~ 220 (295)
.|+|+||.|.|..+
T Consensus 115 ~D~viiD~pp~~~~ 128 (246)
T TIGR03371 115 RDWVLIDVPRGPSP 128 (246)
T ss_pred CCEEEEECCCCchH
Confidence 59999999998654
No 72
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=24.18 E-value=3.4e+02 Score=25.56 Aligned_cols=47 Identities=15% Similarity=0.041 Sum_probs=30.9
Q ss_pred HHHhhcCCccEEeec--cCchhhhhhhhccCCceeEeccChHHHHHHHhhC
Q 043166 103 RVLEKKAPCNFLVFG--LGHDSLMWSTLNYGGRTIFLEEDEAWIEQIRRRF 151 (295)
Q Consensus 103 ~VL~~raPCNfLVFG--Lg~dslmW~alN~gGrTvFLeEd~~~i~~v~~~~ 151 (295)
+.++...+-.+|=.| -|.-++.++. +|++.+-+|-++.-++..+++.
T Consensus 167 ~~l~~~~~~~VLDl~cG~G~~sl~la~--~~~~V~gvD~s~~av~~A~~n~ 215 (315)
T PRK03522 167 DWVRELPPRSMWDLFCGVGGFGLHCAT--PGMQLTGIEISAEAIACAKQSA 215 (315)
T ss_pred HHHHhcCCCEEEEccCCCCHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHH
Confidence 344333456677664 4555555544 6788999999999998777553
No 73
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=24.01 E-value=78 Score=26.33 Aligned_cols=14 Identities=29% Similarity=0.698 Sum_probs=5.7
Q ss_pred HHHHHHH-HHHHHHH
Q 043166 15 LLGIFLA-FLLLFVV 28 (295)
Q Consensus 15 l~~~~~~-~~ll~~~ 28 (295)
|++++++ |||+|++
T Consensus 4 l~~iii~~i~l~~~~ 18 (130)
T PF12273_consen 4 LFAIIIVAILLFLFL 18 (130)
T ss_pred eHHHHHHHHHHHHHH
Confidence 3434333 4444444
No 74
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=23.58 E-value=1.8e+02 Score=24.58 Aligned_cols=85 Identities=14% Similarity=0.066 Sum_probs=52.1
Q ss_pred cccHHHHHHHHHHHhhcCCccEEeeccCchhhh----hhhhccCCceeEeccChHHHHHHHhhCCCceeEEeeecchhhh
Q 043166 92 QQTLKEISVSARVLEKKAPCNFLVFGLGHDSLM----WSTLNYGGRTIFLEEDEAWIEQIRRRFPMLESYHVTYDSKVNQ 167 (295)
Q Consensus 92 qqt~~Ei~~~~~VL~~raPCNfLVFGLg~dslm----W~alN~gGrTvFLeEd~~~i~~v~~~~p~leay~V~Y~t~~~e 167 (295)
++..+++..+.+.|.+ +. ++.|||.|.-..+ ..-++.-|..++.-+|.. ...-.++=-.--+.|.-.-.+
T Consensus 14 ~l~~~~~~~~~~~l~~-a~-~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~----~~~~~~~Dv~I~iS~sG~t~~ 87 (179)
T TIGR03127 14 RIDEEELDKLADKIIK-AK-RIFVAGAGRSGLVGKAFAMRLMHLGFNVYVVGETT----TPSIKKGDLLIAISGSGETES 87 (179)
T ss_pred hCCHHHHHHHHHHHHh-CC-EEEEEecCHHHHHHHHHHHHHHhCCCeEEEeCCcc----cCCCCCCCEEEEEeCCCCcHH
Confidence 5677888888888865 33 8999999976653 333566676666555431 111222333445666666667
Q ss_pred HHHHHhhcCCCCCCC
Q 043166 168 AENLMDVGKGPECTA 182 (295)
Q Consensus 168 a~~LL~~~r~~~C~p 182 (295)
.-++++.+++..|.-
T Consensus 88 ~i~~~~~ak~~g~~i 102 (179)
T TIGR03127 88 LVTVAKKAKEIGATV 102 (179)
T ss_pred HHHHHHHHHHCCCeE
Confidence 777777776444443
No 75
>PHA02913 TGF-beta-like protein; Provisional
Probab=23.38 E-value=42 Score=30.56 Aligned_cols=18 Identities=22% Similarity=0.407 Sum_probs=14.3
Q ss_pred hh-hcccccEEEEeCCCCCCC
Q 043166 201 EV-YDIKWDLIMVDAPTGYYE 220 (295)
Q Consensus 201 ev-Ye~~WDvImVDgP~Gy~~ 220 (295)
.+ =|+-||+|+ +|+||.+
T Consensus 85 DF~~dIGWdWII--APkgY~A 103 (172)
T PHA02913 85 DFKADMGMKWIL--KPEGTHA 103 (172)
T ss_pred chhhccCcceEe--cCCCeee
Confidence 44 488999887 9999964
No 76
>PF12317 IFT46_B_C: Intraflagellar transport complex B protein 46 C terminal; InterPro: IPR022088 This entry represents proteins is found in eukaryotes. Proteins are typically between 298 and 416 amino acids in length. It is thought to be a flagellar protein of complex B and like all IFT proteins, it is required for transport of IFT particles into the flagella [].
Probab=23.31 E-value=63 Score=30.42 Aligned_cols=35 Identities=23% Similarity=0.355 Sum_probs=31.5
Q ss_pred hHHHHHHHhhCCCceeEEeeecchhhhHHHHHhhc
Q 043166 141 EAWIEQIRRRFPMLESYHVTYDSKVNQAENLMDVG 175 (295)
Q Consensus 141 ~~~i~~v~~~~p~leay~V~Y~t~~~ea~~LL~~~ 175 (295)
..||+.|++-|-.=..+.|.|+...-+-+.||+.-
T Consensus 119 d~WI~~i~elHr~kp~~tV~Y~~~mPdId~LMqeW 153 (214)
T PF12317_consen 119 DKWIESIEELHRSKPPPTVHYSKPMPDIDTLMQEW 153 (214)
T ss_pred HHHHHHHHHHHhcCCCCceecCCCCCCHHHHHHHC
Confidence 67999999999888899999999999999999743
No 77
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=23.10 E-value=1.2e+02 Score=23.51 Aligned_cols=28 Identities=32% Similarity=0.534 Sum_probs=17.8
Q ss_pred CCCccCccchhHHHHHHHHHHHH-HHHHH
Q 043166 1 MRSKANQALNFKVLLLGIFLAFL-LLFVV 28 (295)
Q Consensus 1 ~~~k~~~~~~~k~il~~~~~~~~-ll~~~ 28 (295)
||.|....++-=++|++++++|- |++..
T Consensus 1 ~r~k~~~~mtriVLLISfiIlfgRl~Y~~ 29 (59)
T PF11119_consen 1 MRRKKNSRMTRIVLLISFIILFGRLIYSA 29 (59)
T ss_pred CCCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 67777776665557777766665 55543
No 78
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=22.93 E-value=56 Score=26.58 Aligned_cols=13 Identities=38% Similarity=0.825 Sum_probs=11.1
Q ss_pred cEEEEeCCCCCCC
Q 043166 208 DLIMVDAPTGYYE 220 (295)
Q Consensus 208 DvImVDgP~Gy~~ 220 (295)
|+|+||+|.|...
T Consensus 64 d~viiD~p~~~~~ 76 (179)
T cd02036 64 DYILIDSPAGIER 76 (179)
T ss_pred CEEEEECCCCCcH
Confidence 9999999988643
No 79
>PF04250 DUF429: Protein of unknown function (DUF429); InterPro: IPR007362 This is a family of uncharacterised proteins.
Probab=22.32 E-value=67 Score=28.17 Aligned_cols=19 Identities=32% Similarity=0.496 Sum_probs=15.3
Q ss_pred cccEEEEeCCCCCCCCCCCc
Q 043166 206 KWDLIMVDAPTGYYEEAPGR 225 (295)
Q Consensus 206 ~WDvImVDgP~Gy~~eaPGR 225 (295)
. ++|.||+|=|+.++..+|
T Consensus 41 ~-~~v~IDaPlgl~~~~~~R 59 (209)
T PF04250_consen 41 P-AVVGIDAPLGLPNESGRR 59 (209)
T ss_pred C-cEEEEEcCcccCCCCCCc
Confidence 5 899999999995565555
No 80
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=22.07 E-value=3.5e+02 Score=20.87 Aligned_cols=65 Identities=22% Similarity=0.345 Sum_probs=45.5
Q ss_pred hHHHHHHHhhCCCceeEEeeecchhhhHHHHHhhcC--CCCCCC-CCCCCCccccccccCCChhhhc--ccccEEEE
Q 043166 141 EAWIEQIRRRFPMLESYHVTYDSKVNQAENLMDVGK--GPECTA-IGDPKYSMCQLALKGLPAEVYD--IKWDLIMV 212 (295)
Q Consensus 141 ~~~i~~v~~~~p~leay~V~Y~t~~~ea~~LL~~~r--~~~C~p-~~~~~~S~CkLAl~~LP~evYe--~~WDvImV 212 (295)
+++++.+++..|++-...+.|.....++.++.+..| .|.+.= ++.... +-.|.++.+ ..+|.+++
T Consensus 41 ~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~~~-------t~~~~~~l~~~~~~D~vv~ 110 (121)
T PF02310_consen 41 EELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGPHA-------TADPEEILREYPGIDYVVR 110 (121)
T ss_dssp HHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEESSS-------GHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECCch-------hcChHHHhccCcCcceecC
Confidence 777889999999999999999999999999998866 344332 111111 234566654 56687765
No 81
>PRK10037 cell division protein; Provisional
Probab=21.82 E-value=57 Score=29.20 Aligned_cols=15 Identities=27% Similarity=0.545 Sum_probs=12.7
Q ss_pred ccccEEEEeCCCCCC
Q 043166 205 IKWDLIMVDAPTGYY 219 (295)
Q Consensus 205 ~~WDvImVDgP~Gy~ 219 (295)
.+.|+|+||.|.|..
T Consensus 116 ~~yD~iiIDtpp~~~ 130 (250)
T PRK10037 116 GRYQWILLDLPRGAS 130 (250)
T ss_pred CCCCEEEEECCCCcc
Confidence 468999999999853
No 82
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=21.75 E-value=56 Score=29.45 Aligned_cols=48 Identities=13% Similarity=0.167 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhh---cCCccEEee-----ccCchhh----hhhhhccCCceeEeccChH
Q 043166 95 LKEISVSARVLEK---KAPCNFLVF-----GLGHDSL----MWSTLNYGGRTIFLEEDEA 142 (295)
Q Consensus 95 ~~Ei~~~~~VL~~---raPCNfLVF-----GLg~dsl----mW~alN~gGrTvFLeEd~~ 142 (295)
.++++.+..-|.. ..+++.+.| |-|.-+. .++.-..|-+++.+|-|..
T Consensus 84 ~e~~~~l~~~l~~~~~~~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D~~ 143 (274)
T TIGR03029 84 VEALRALRSQLMLRWFSEGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDANLR 143 (274)
T ss_pred HHHHHHHHHHhhhhccCCCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCC
Confidence 3456666665543 356776655 4455442 2332234668999998753
No 83
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=21.61 E-value=5.1e+02 Score=22.11 Aligned_cols=116 Identities=11% Similarity=-0.015 Sum_probs=55.3
Q ss_pred CCccEEeecc-Cch--hhhhhhhccCCceeEeccChHHHHHHHhhCC---CceeEEeeecchhhhHHHHHhhcC-CCCCC
Q 043166 109 APCNFLVFGL-GHD--SLMWSTLNYGGRTIFLEEDEAWIEQIRRRFP---MLESYHVTYDSKVNQAENLMDVGK-GPECT 181 (295)
Q Consensus 109 aPCNfLVFGL-g~d--slmW~alN~gGrTvFLeEd~~~i~~v~~~~p---~leay~V~Y~t~~~ea~~LL~~~r-~~~C~ 181 (295)
.-.+.||||= |.- .........|.+.+.+.-+++..+.+.+... +.+...+.+. ...+-.+.++.++ ==.|.
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~diVi~at 105 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETS-DDAARAAAIKGADVVFAAG 105 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCC-CHHHHHHHHhcCCEEEECC
Confidence 4478999985 543 3344444555555555667666655544321 2332222222 1122223333333 00122
Q ss_pred CCCC--C-----CCc----ccccc-ccCCChhhhcccccEEEEeCCCCCCCCCCCc
Q 043166 182 AIGD--P-----KYS----MCQLA-LKGLPAEVYDIKWDLIMVDAPTGYYEEAPGR 225 (295)
Q Consensus 182 p~~~--~-----~~S----~CkLA-l~~LP~evYe~~WDvImVDgP~Gy~~eaPGR 225 (295)
+.+. + ... -|-++ -.+...++-+...|++++|||.++.+-+.|-
T Consensus 106 ~~g~~~~~~~~~~~~~~~vv~D~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~g 161 (194)
T cd01078 106 AAGVELLEKLAWAPKPLAVAADVNAVPPVGIEGIDVPDKGVDREGKVPYGAIGVGG 161 (194)
T ss_pred CCCceechhhhcccCceeEEEEccCCCCCCcccccccCCceecCCCeEEEeeccch
Confidence 2221 0 111 11111 1345556677899999999998875444443
No 84
>smart00204 TGFB Transforming growth factor-beta (TGF-beta) family. Family members are active as disulphide-linked homo- or heterodimers. TGFB is a multifunctional peptide that controls proliferation, differentiation, and other functions in many cell types.
Probab=21.56 E-value=45 Score=26.96 Aligned_cols=18 Identities=44% Similarity=1.016 Sum_probs=14.1
Q ss_pred hhhcccc-cEEEEeCCCCCCC
Q 043166 201 EVYDIKW-DLIMVDAPTGYYE 220 (295)
Q Consensus 201 evYe~~W-DvImVDgP~Gy~~ 220 (295)
.|=|+-| |.|+ +|+||.+
T Consensus 9 dF~~iGW~~wIi--aP~~y~a 27 (102)
T smart00204 9 DFKDLGWDDWII--APKGYNA 27 (102)
T ss_pred EHhhcCCcceEE--cCCceee
Confidence 4558899 7887 8999964
No 85
>PRK15463 cold shock-like protein CspF; Provisional
Probab=21.54 E-value=77 Score=24.26 Aligned_cols=9 Identities=67% Similarity=0.962 Sum_probs=7.5
Q ss_pred CCCceEEEe
Q 043166 241 DGDTDVFVH 249 (295)
Q Consensus 241 ~g~TdVfVH 249 (295)
+|..|||||
T Consensus 25 ~g~~DvFvH 33 (70)
T PRK15463 25 DGRKDVQVH 33 (70)
T ss_pred CCCccEEEE
Confidence 467899999
No 86
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=21.22 E-value=74 Score=27.66 Aligned_cols=16 Identities=25% Similarity=0.634 Sum_probs=13.2
Q ss_pred cccccEEEEeCCCCCC
Q 043166 204 DIKWDLIMVDAPTGYY 219 (295)
Q Consensus 204 e~~WDvImVDgP~Gy~ 219 (295)
..+-|+|+||||-|.+
T Consensus 101 ~~~~D~viIEg~gg~~ 116 (222)
T PRK00090 101 AQQYDLVLVEGAGGLL 116 (222)
T ss_pred HhhCCEEEEECCCcee
Confidence 3467999999999875
No 87
>PRK10742 putative methyltransferase; Provisional
Probab=20.64 E-value=1.1e+02 Score=29.36 Aligned_cols=30 Identities=27% Similarity=0.520 Sum_probs=25.5
Q ss_pred ccCchhhhhhhhccCCceeEeccChHHHHHHH
Q 043166 117 GLGHDSLMWSTLNYGGRTIFLEEDEAWIEQIR 148 (295)
Q Consensus 117 GLg~dslmW~alN~gGrTvFLeEd~~~i~~v~ 148 (295)
|||.|++..+++ |++.+++|-++.-..-++
T Consensus 98 GlG~Da~~las~--G~~V~~vEr~p~vaalL~ 127 (250)
T PRK10742 98 GLGRDAFVLASV--GCRVRMLERNPVVAALLD 127 (250)
T ss_pred CccHHHHHHHHc--CCEEEEEECCHHHHHHHH
Confidence 999999999999 888889998887665544
No 88
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=20.62 E-value=71 Score=22.54 Aligned_cols=13 Identities=31% Similarity=0.680 Sum_probs=11.4
Q ss_pred cEEEEeCCCCCCC
Q 043166 208 DLIMVDAPTGYYE 220 (295)
Q Consensus 208 DvImVDgP~Gy~~ 220 (295)
|+|+||+|.+...
T Consensus 35 d~iivD~~~~~~~ 47 (99)
T cd01983 35 DYVLIDTPPGLGL 47 (99)
T ss_pred CEEEEeCCCCccc
Confidence 9999999988754
No 89
>CHL00175 minD septum-site determining protein; Validated
Probab=20.23 E-value=62 Score=29.26 Aligned_cols=14 Identities=36% Similarity=0.812 Sum_probs=12.3
Q ss_pred cccEEEEeCCCCCC
Q 043166 206 KWDLIMVDAPTGYY 219 (295)
Q Consensus 206 ~WDvImVDgP~Gy~ 219 (295)
+.|+|+||.|.|..
T Consensus 126 ~yD~VIiDtpp~~~ 139 (281)
T CHL00175 126 GYDYILIDCPAGID 139 (281)
T ss_pred CCCEEEEeCCCCCC
Confidence 68999999999864
No 90
>PRK13946 shikimate kinase; Provisional
Probab=20.19 E-value=2.4e+02 Score=24.18 Aligned_cols=52 Identities=29% Similarity=0.397 Sum_probs=33.1
Q ss_pred HHHHHHHHHhhcCCccEEeeccC--chhhhhhhhccCCceeEeccChHH-HHHHHhh
Q 043166 97 EISVSARVLEKKAPCNFLVFGLG--HDSLMWSTLNYGGRTIFLEEDEAW-IEQIRRR 150 (295)
Q Consensus 97 Ei~~~~~VL~~raPCNfLVFGLg--~dslmW~alN~gGrTvFLeEd~~~-i~~v~~~ 150 (295)
|..++..+++ ..+| .++-|-| -..-.|..++.+|.+|||+-+++- ++.+.++
T Consensus 69 e~~~l~~l~~-~~~~-Vi~~ggg~~~~~~~r~~l~~~~~~v~L~a~~e~~~~Rl~~r 123 (184)
T PRK13946 69 ERRVIARLLK-GGPL-VLATGGGAFMNEETRAAIAEKGISVWLKADLDVLWERVSRR 123 (184)
T ss_pred HHHHHHHHHh-cCCe-EEECCCCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHhcCC
Confidence 3444444443 3355 6666655 344567778889999999988874 4666543
No 91
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=20.05 E-value=2.1e+02 Score=23.27 Aligned_cols=41 Identities=24% Similarity=0.318 Sum_probs=31.2
Q ss_pred CCccEEee--ccCchhhhhh-hhccCCceeEeccChHHHHHHHh
Q 043166 109 APCNFLVF--GLGHDSLMWS-TLNYGGRTIFLEEDEAWIEQIRR 149 (295)
Q Consensus 109 aPCNfLVF--GLg~dslmW~-alN~gGrTvFLeEd~~~i~~v~~ 149 (295)
...++|=+ |-|+.+..++ .+++++..+-+|=++..|+.+++
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~ 46 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKK 46 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHH
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhc
Confidence 34555555 5567777777 67889999999999998887776
Done!