Query 043166
Match_columns 295
No_of_seqs 95 out of 97
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 23:58:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043166.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043166hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cvo_A Methyltransferase-like 96.9 0.0013 4.6E-08 57.6 6.0 164 91-284 14-185 (202)
2 3c6k_A Spermine synthase; sper 90.2 1.1 3.6E-05 43.2 8.9 151 109-284 205-377 (381)
3 2qfm_A Spermine synthase; sper 89.7 2 6.8E-05 41.0 10.2 147 109-284 188-360 (364)
4 3gjy_A Spermidine synthase; AP 87.0 1.4 4.8E-05 40.8 7.2 81 110-219 90-172 (317)
5 3o4f_A Spermidine synthase; am 86.4 2.4 8.1E-05 39.1 8.3 51 103-153 77-129 (294)
6 3u81_A Catechol O-methyltransf 86.3 2.3 7.8E-05 35.1 7.4 77 74-150 22-102 (221)
7 3adn_A Spermidine synthase; am 85.5 2 6.9E-05 38.5 7.2 49 104-152 78-128 (294)
8 1iy9_A Spermidine synthase; ro 84.8 3.3 0.00011 36.4 8.1 46 107-152 73-120 (275)
9 3cbg_A O-methyltransferase; cy 82.5 6.4 0.00022 32.9 8.7 77 74-150 35-116 (232)
10 2gpy_A O-methyltransferase; st 81.5 6 0.00021 32.6 8.0 77 74-150 19-97 (233)
11 2i7c_A Spermidine synthase; tr 80.5 5 0.00017 35.3 7.6 50 105-154 74-125 (283)
12 2hnk_A SAM-dependent O-methylt 80.2 7.6 0.00026 32.3 8.3 78 74-151 23-105 (239)
13 3c3p_A Methyltransferase; NP_9 79.7 8.3 0.00028 31.2 8.2 78 74-151 21-101 (210)
14 3dr5_A Putative O-methyltransf 77.2 9.7 0.00033 32.1 8.1 78 74-151 18-101 (221)
15 2b2c_A Spermidine synthase; be 76.2 8.8 0.0003 34.7 8.0 50 105-154 104-155 (314)
16 3ntv_A MW1564 protein; rossman 76.0 7.1 0.00024 32.6 6.9 77 74-150 36-114 (232)
17 3c3y_A Pfomt, O-methyltransfer 74.5 15 0.00052 30.9 8.6 78 74-151 33-115 (237)
18 2avd_A Catechol-O-methyltransf 73.6 15 0.00052 29.8 8.1 77 74-150 32-113 (229)
19 2o07_A Spermidine synthase; st 73.1 6.1 0.00021 35.4 6.1 46 107-152 93-140 (304)
20 3duw_A OMT, O-methyltransferas 72.6 16 0.00054 29.6 8.0 76 75-150 22-102 (223)
21 1mjf_A Spermidine synthase; sp 72.1 17 0.00057 31.8 8.5 47 105-151 71-118 (281)
22 2pt6_A Spermidine synthase; tr 71.7 12 0.00041 33.8 7.7 50 104-153 111-162 (321)
23 1sui_A Caffeoyl-COA O-methyltr 71.7 14 0.00046 31.7 7.7 78 74-151 42-124 (247)
24 3bwc_A Spermidine synthase; SA 68.1 6.9 0.00024 34.7 5.3 46 107-152 93-140 (304)
25 3tfw_A Putative O-methyltransf 65.9 25 0.00085 29.7 8.1 78 74-151 26-108 (248)
26 1l3i_A Precorrin-6Y methyltran 62.1 27 0.00094 26.7 7.1 67 84-150 7-74 (192)
27 3tr6_A O-methyltransferase; ce 60.9 39 0.0013 27.2 8.1 78 74-151 26-109 (225)
28 1vl5_A Unknown conserved prote 59.3 16 0.00053 30.4 5.6 65 84-150 14-78 (260)
29 2yxd_A Probable cobalt-precorr 53.3 52 0.0018 24.9 7.3 59 92-150 18-76 (183)
30 3e05_A Precorrin-6Y C5,15-meth 53.2 24 0.00081 28.2 5.5 60 91-150 21-83 (204)
31 3pfg_A N-methyltransferase; N, 49.0 72 0.0025 26.4 8.0 61 95-155 34-96 (263)
32 3hm2_A Precorrin-6Y C5,15-meth 48.5 47 0.0016 25.3 6.4 60 91-150 6-68 (178)
33 2yvl_A TRMI protein, hypotheti 48.0 42 0.0014 27.3 6.3 58 93-150 75-132 (248)
34 3i9f_A Putative type 11 methyl 46.1 20 0.00068 27.5 3.9 54 102-155 10-63 (170)
35 3cgg_A SAM-dependent methyltra 45.7 73 0.0025 24.3 7.0 47 108-154 45-91 (195)
36 2cmg_A Spermidine synthase; tr 44.1 32 0.0011 30.1 5.3 48 106-153 69-116 (262)
37 3hnr_A Probable methyltransfer 43.1 80 0.0027 25.1 7.1 57 96-152 32-88 (220)
38 3mb5_A SAM-dependent methyltra 42.6 60 0.002 26.7 6.5 59 92-150 76-137 (255)
39 3h2b_A SAM-dependent methyltra 41.5 78 0.0027 24.9 6.8 59 96-155 29-87 (203)
40 3kjh_A CO dehydrogenase/acetyl 40.5 13 0.00046 30.0 2.1 17 204-220 129-145 (254)
41 1g3q_A MIND ATPase, cell divis 40.0 13 0.00043 30.4 1.9 15 205-219 110-124 (237)
42 3e8s_A Putative SAM dependent 39.8 93 0.0032 24.4 7.0 55 96-150 39-93 (227)
43 3gt7_A Sensor protein; structu 39.5 44 0.0015 25.1 4.8 44 129-173 5-48 (154)
44 1byi_A Dethiobiotin synthase; 39.4 13 0.00045 30.1 1.9 15 205-219 107-121 (224)
45 1dus_A MJ0882; hypothetical pr 37.6 76 0.0026 24.2 6.0 56 96-151 39-94 (194)
46 2ph1_A Nucleotide-binding prot 37.1 15 0.00052 31.2 2.0 16 205-220 127-142 (262)
47 3n53_A Response regulator rece 36.6 58 0.002 23.7 5.0 39 133-173 5-43 (140)
48 2pwy_A TRNA (adenine-N(1)-)-me 36.1 93 0.0032 25.4 6.6 62 89-150 76-140 (258)
49 3lte_A Response regulator; str 35.6 37 0.0013 24.3 3.7 43 130-173 5-47 (132)
50 3bxo_A N,N-dimethyltransferase 35.4 1.1E+02 0.0036 24.5 6.8 60 96-155 25-86 (239)
51 3jwh_A HEN1; methyltransferase 35.4 1.1E+02 0.0036 24.5 6.8 60 92-151 12-73 (217)
52 3nhm_A Response regulator; pro 34.8 60 0.0021 23.2 4.7 40 132-173 5-44 (133)
53 3jwg_A HEN1, methyltransferase 34.6 1.2E+02 0.0043 24.1 7.1 61 92-152 12-74 (219)
54 1p91_A Ribosomal RNA large sub 34.2 1.3E+02 0.0043 25.0 7.3 55 101-155 74-133 (269)
55 1y8c_A S-adenosylmethionine-de 33.9 1.3E+02 0.0043 24.0 7.0 60 92-151 18-79 (246)
56 1rjd_A PPM1P, carboxy methyl t 33.7 35 0.0012 31.3 4.0 41 105-145 93-134 (334)
57 4dzz_A Plasmid partitioning pr 33.2 18 0.00063 28.6 1.8 14 206-219 75-88 (206)
58 3m33_A Uncharacterized protein 33.1 1.5E+02 0.0052 24.0 7.5 49 108-156 47-95 (226)
59 1uir_A Polyamine aminopropyltr 32.7 77 0.0027 28.1 6.0 48 105-152 73-122 (314)
60 1inl_A Spermidine synthase; be 32.7 1.4E+02 0.0047 26.2 7.6 48 105-152 86-135 (296)
61 3r3h_A O-methyltransferase, SA 32.6 36 0.0012 28.9 3.7 76 74-149 23-103 (242)
62 3ccf_A Cyclopropane-fatty-acyl 31.8 1E+02 0.0035 25.8 6.4 54 102-155 50-103 (279)
63 2qxy_A Response regulator; reg 31.1 76 0.0026 23.0 4.8 42 131-173 4-45 (142)
64 2qr3_A Two-component system re 31.0 85 0.0029 22.5 5.0 41 132-173 4-44 (140)
65 2p35_A Trans-aconitate 2-methy 30.4 88 0.003 25.4 5.6 49 107-155 31-81 (259)
66 1hyq_A MIND, cell division inh 30.4 22 0.00076 29.6 1.9 15 205-219 109-123 (263)
67 1vbf_A 231AA long hypothetical 30.3 1.1E+02 0.0036 24.7 6.0 58 96-153 57-114 (231)
68 3cz5_A Two-component response 30.2 1E+02 0.0035 22.8 5.5 42 132-173 6-48 (153)
69 1wzn_A SAM-dependent methyltra 29.7 1.3E+02 0.0044 24.5 6.5 58 93-150 22-82 (252)
70 2b4a_A BH3024; flavodoxin-like 29.7 56 0.0019 23.7 3.9 42 130-172 14-55 (138)
71 3hdg_A Uncharacterized protein 29.7 49 0.0017 23.9 3.5 40 133-173 9-48 (137)
72 3hv2_A Response regulator/HD d 29.6 1.1E+02 0.0038 22.7 5.6 42 131-173 14-55 (153)
73 1o54_A SAM-dependent O-methylt 29.3 1.2E+02 0.004 25.7 6.3 59 92-150 95-156 (277)
74 3ea0_A ATPase, para family; al 29.3 17 0.00057 29.7 1.0 15 206-220 118-132 (245)
75 2j48_A Two-component sensor ki 29.1 55 0.0019 22.3 3.6 41 132-173 2-42 (119)
76 1i9g_A Hypothetical protein RV 28.8 1.3E+02 0.0044 25.0 6.5 59 92-150 82-143 (280)
77 2oze_A ORF delta'; para, walke 28.7 22 0.00074 30.5 1.6 54 90-143 15-77 (298)
78 2woo_A ATPase GET3; tail-ancho 28.2 24 0.00082 31.7 1.9 33 110-142 18-58 (329)
79 1wcv_1 SOJ, segregation protei 28.2 26 0.0009 29.5 2.0 15 205-219 110-124 (257)
80 3lua_A Response regulator rece 28.0 44 0.0015 24.3 3.0 42 131-172 4-45 (140)
81 2qy6_A UPF0209 protein YFCK; s 27.8 55 0.0019 28.8 4.2 81 75-175 35-133 (257)
82 3kyj_B CHEY6 protein, putative 27.8 1.2E+02 0.004 22.2 5.4 45 129-173 11-56 (145)
83 3q9l_A Septum site-determining 27.7 26 0.0009 28.8 1.9 14 206-219 113-126 (260)
84 2xj4_A MIPZ; replication, cell 27.6 23 0.00079 30.6 1.6 15 205-219 102-116 (286)
85 3cwq_A Para family chromosome 27.4 21 0.00071 29.6 1.3 16 204-219 65-81 (209)
86 4e7p_A Response regulator; DNA 27.3 98 0.0034 22.9 4.9 41 133-173 22-63 (150)
87 1n0w_A DNA repair protein RAD5 26.9 26 0.00089 28.4 1.7 81 205-286 118-223 (243)
88 1jy4_A B4dimer; eight-stranded 26.7 23 0.00077 23.6 1.1 10 275-284 20-29 (35)
89 3ez9_A Para; DNA binding, wing 26.7 22 0.00075 32.4 1.4 50 93-142 87-157 (403)
90 3ug7_A Arsenical pump-driving 26.4 28 0.00094 31.6 2.0 15 204-218 149-163 (349)
91 3bkw_A MLL3908 protein, S-aden 26.4 1.2E+02 0.0041 24.3 5.6 58 96-153 30-88 (243)
92 3i42_A Response regulator rece 26.3 80 0.0027 22.4 4.1 40 133-173 5-44 (127)
93 3njr_A Precorrin-6Y methylase; 26.2 1.3E+02 0.0044 24.5 5.9 59 92-150 37-96 (204)
94 2woj_A ATPase GET3; tail-ancho 26.2 21 0.00071 32.7 1.1 32 111-142 18-59 (354)
95 3k9g_A PF-32 protein; ssgcid, 26.2 25 0.00084 29.6 1.5 15 205-219 143-157 (267)
96 3eod_A Protein HNR; response r 26.1 75 0.0026 22.7 3.9 41 131-172 7-47 (130)
97 3f6c_A Positive transcription 25.8 71 0.0024 22.8 3.8 40 133-173 3-43 (134)
98 3fwz_A Inner membrane protein 25.1 1.2E+02 0.0043 23.1 5.3 38 112-149 9-48 (140)
99 3ez2_A Plasmid partition prote 24.9 25 0.00086 31.9 1.4 50 93-142 84-154 (398)
100 2jk1_A HUPR, hydrogenase trans 24.9 1.1E+02 0.0037 22.2 4.7 39 133-173 3-41 (139)
101 3t8y_A CHEB, chemotaxis respon 24.7 1E+02 0.0035 23.4 4.8 41 133-173 27-68 (164)
102 3io3_A DEHA2D07832P; chaperone 24.4 27 0.00092 32.2 1.5 34 109-142 16-59 (348)
103 1u94_A RECA protein, recombina 24.4 26 0.00089 32.4 1.4 63 205-267 140-225 (356)
104 3eul_A Possible nitrate/nitrit 24.3 79 0.0027 23.4 3.9 45 129-173 13-58 (152)
105 3cg4_A Response regulator rece 24.2 95 0.0032 22.4 4.3 42 131-173 7-48 (142)
106 2zr9_A Protein RECA, recombina 24.2 38 0.0013 31.0 2.5 64 206-269 139-225 (349)
107 2kw5_A SLR1183 protein; struct 23.9 1.6E+02 0.0055 23.0 5.9 49 103-151 23-71 (202)
108 3ou2_A SAM-dependent methyltra 23.5 2.1E+02 0.007 22.4 6.4 53 97-149 33-86 (218)
109 2xvm_A Tellurite resistance pr 23.2 1.6E+02 0.0055 22.6 5.7 50 101-150 24-73 (199)
110 1xp8_A RECA protein, recombina 22.9 79 0.0027 29.3 4.4 54 206-259 152-218 (366)
111 3grc_A Sensor protein, kinase; 22.6 90 0.0031 22.5 3.9 42 131-173 6-47 (140)
112 3cfy_A Putative LUXO repressor 22.6 1.4E+02 0.0047 21.8 4.9 40 133-173 6-45 (137)
113 2yxe_A Protein-L-isoaspartate 22.1 1.4E+02 0.0049 23.6 5.3 54 97-150 65-121 (215)
114 3kto_A Response regulator rece 22.0 80 0.0027 23.0 3.5 31 130-161 5-35 (136)
115 3dtn_A Putative methyltransfer 22.0 1.6E+02 0.0054 23.6 5.6 59 96-154 30-91 (234)
116 3iqw_A Tail-anchored protein t 21.8 35 0.0012 31.2 1.7 13 204-216 136-148 (334)
117 3cnb_A DNA-binding response re 21.5 66 0.0023 23.1 2.9 44 130-173 7-51 (143)
118 3zq6_A Putative arsenical pump 21.5 36 0.0012 30.3 1.7 12 205-216 137-148 (324)
119 3ajd_A Putative methyltransfer 21.3 48 0.0016 28.5 2.4 35 124-158 197-237 (274)
120 3igf_A ALL4481 protein; two-do 21.2 36 0.0012 31.9 1.7 12 205-216 123-134 (374)
121 3lbf_A Protein-L-isoaspartate 21.1 2E+02 0.0067 22.7 5.9 55 97-151 65-119 (210)
122 3cio_A ETK, tyrosine-protein k 21.0 35 0.0012 30.2 1.6 14 205-218 212-225 (299)
123 3snk_A Response regulator CHEY 20.6 72 0.0025 23.1 3.0 40 131-170 14-53 (135)
124 4a1x_C CP5-46-A peptide; hydro 20.5 47 0.0016 20.8 1.6 11 209-220 7-17 (26)
125 1mvo_A PHOP response regulator 20.3 97 0.0033 22.1 3.6 41 132-173 4-44 (136)
126 2p7i_A Hypothetical protein; p 20.0 3.2E+02 0.011 21.5 7.8 57 97-153 29-86 (250)
No 1
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=96.89 E-value=0.0013 Score=57.58 Aligned_cols=164 Identities=17% Similarity=0.195 Sum_probs=93.1
Q ss_pred ccccHHHHHHHHHHHhhcCCccEEeeccCchhhhhhhhccCCceeEeccChHHHHHHHhhCC--Cc-eeEEeeecchhhh
Q 043166 91 PQQTLKEISVSARVLEKKAPCNFLVFGLGHDSLMWSTLNYGGRTIFLEEDEAWIEQIRRRFP--ML-ESYHVTYDSKVNQ 167 (295)
Q Consensus 91 pqqt~~Ei~~~~~VL~~raPCNfLVFGLg~dslmW~alN~gGrTvFLeEd~~~i~~v~~~~p--~l-eay~V~Y~t~~~e 167 (295)
+.++.++.+.+...++ .|=|.|-+|-|. |-+|.|...+|+-+=+|-|++|++.+++..- ++ +...|.+.. .+
T Consensus 14 ~~v~~~~~~~L~~~l~--~a~~VLEiGtGy-STl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~--gd 88 (202)
T 3cvo_A 14 LTMPPAEAEALRMAYE--EAEVILEYGSGG-STVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVW--TD 88 (202)
T ss_dssp CCSCHHHHHHHHHHHH--HCSEEEEESCSH-HHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEE--CC
T ss_pred ccCCHHHHHHHHHHhh--CCCEEEEECchH-HHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEE--eC
Confidence 3688888888877443 578999999996 6666665558999999999999988875432 11 122333331 11
Q ss_pred HHHHHhhcCCCCCCCCCCCCCccccccccCCChhhh--c--ccccEEEEeCCCCCCCCCCCchhhhhhhhhhhhccCCCC
Q 043166 168 AENLMDVGKGPECTAIGDPKYSMCQLALKGLPAEVY--D--IKWDLIMVDAPTGYYEEAPGRMTAIYTAGMMARNREDGD 243 (295)
Q Consensus 168 a~~LL~~~r~~~C~p~~~~~~S~CkLAl~~LP~evY--e--~~WDvImVDgP~Gy~~eaPGRM~aIyTAavmAR~r~~g~ 243 (295)
|.+.++- ..|.....+ -.+..++..+. + -..|+|+|||..+ ....+- .+-+-|.||.
T Consensus 89 a~~~~~w-----g~p~~~~~~----~~l~~~~~~i~~~~~~~~fDlIfIDg~k~--------~~~~~~--~l~~l~~GG~ 149 (202)
T 3cvo_A 89 IGPTGDW-----GHPVSDAKW----RSYPDYPLAVWRTEGFRHPDVVLVDGRFR--------VGCALA--TAFSITRPVT 149 (202)
T ss_dssp CSSBCGG-----GCBSSSTTG----GGTTHHHHGGGGCTTCCCCSEEEECSSSH--------HHHHHH--HHHHCSSCEE
T ss_pred chhhhcc-----cccccchhh----hhHHHHhhhhhccccCCCCCEEEEeCCCc--------hhHHHH--HHHhcCCCeE
Confidence 1111111 122211110 11122222221 2 4699999999752 233333 2345555553
Q ss_pred ceEEEecC-ChhHHHHHHHhhcccccccccccceeeeEecCC
Q 043166 244 TDVFVHDV-NREVEDNFSKAFLCEGYMKKQEGRIRHFNIPSH 284 (295)
Q Consensus 244 TdVfVHDV-dR~VE~~~s~eFLC~~nlv~~~GrL~HF~Ip~~ 284 (295)
|+++|| .|.-+.. ..+|| .+++..||+-.|++.+.
T Consensus 150 --Iv~DNv~~r~~y~~-v~~~~---~~~~~~~~~a~f~~~p~ 185 (202)
T 3cvo_A 150 --LLFDDYSQRRWQHQ-VEEFL---GAPLMIGRLAAFQVEPQ 185 (202)
T ss_dssp --EEETTGGGCSSGGG-GHHHH---CCCEEETTEEEEEECCC
T ss_pred --EEEeCCcCCcchHH-HHHHH---hHHhhcCceEEEEeCCC
Confidence 467774 5532221 12333 35688999999999654
No 2
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=90.24 E-value=1.1 Score=43.16 Aligned_cols=151 Identities=11% Similarity=0.122 Sum_probs=89.5
Q ss_pred CCccEEeeccCchhhhhhhhccCC-ceeEeccChHHHHHHHhhCCCcee--EE----eeecchhhhHHHHHhhcCCCCCC
Q 043166 109 APCNFLVFGLGHDSLMWSTLNYGG-RTIFLEEDEAWIEQIRRRFPMLES--YH----VTYDSKVNQAENLMDVGKGPECT 181 (295)
Q Consensus 109 aPCNfLVFGLg~dslmW~alN~gG-rTvFLeEd~~~i~~v~~~~p~lea--y~----V~Y~t~~~ea~~LL~~~r~~~C~ 181 (295)
.|=|.||.|+|--..+-..+.|.. +..-+|=||.-|+-.++-+|.+-. ++ =+.+.-+.||.+-|+.+.
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~----- 279 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYA----- 279 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHH-----
T ss_pred CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhh-----
Confidence 467999999999999988888654 677899999999988887776421 11 012222355555554321
Q ss_pred CCCCCCCccccccccCCChhhhcccccEEEEeCCCCCCCCCCCch-hhhhhhhhhhhcc----CCCC-----ceEEEecC
Q 043166 182 AIGDPKYSMCQLALKGLPAEVYDIKWDLIMVDAPTGYYEEAPGRM-TAIYTAGMMARNR----EDGD-----TDVFVHDV 251 (295)
Q Consensus 182 p~~~~~~S~CkLAl~~LP~evYe~~WDvImVDgP~Gy~~eaPGRM-~aIyTAavmAR~r----~~g~-----TdVfVHDV 251 (295)
.+ +.+||||++|.+.+.....|... ...||.-.+...+ .+|. .-++.++.
T Consensus 280 ------------------~~--~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~~~~~~ 339 (381)
T 3c6k_A 280 ------------------KE--GREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCVNLTEA 339 (381)
T ss_dssp ------------------HH--TCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEETTCHHH
T ss_pred ------------------hc--cCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCCCcchhH
Confidence 11 23699999998876554455444 4577765544332 2341 12344666
Q ss_pred ChhHHHHHHHhhcccc---cc--cccccceeeeEecCC
Q 043166 252 NREVEDNFSKAFLCEG---YM--KKQEGRIRHFNIPSH 284 (295)
Q Consensus 252 dR~VE~~~s~eFLC~~---nl--v~~~GrL~HF~Ip~~ 284 (295)
.+.+++.+.+.|---. +. |-.-+..|=|.+.+.
T Consensus 340 ~~~i~~tl~~vF~~v~~~~~~~~VPSy~~~W~F~~aSK 377 (381)
T 3c6k_A 340 LSLYEEQLGRLYCPVEFSKEIVCVPSYLELWVFYTVWK 377 (381)
T ss_dssp HHHHHHHHTTSSSCEEEEEEEECCGGGSSCEEEEEEEE
T ss_pred HHHHHHHHHHhCCcceEeeEEEEecCCCCceeeeEEEC
Confidence 6777777777652111 11 223344788887654
No 3
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=89.70 E-value=2 Score=40.95 Aligned_cols=147 Identities=12% Similarity=0.153 Sum_probs=83.4
Q ss_pred CCccEEeeccCchhhhhhhhccC-CceeEeccChHHHHHHHhhCCCcee--EE-e---eecchhhhHHHHHhhcCCCCCC
Q 043166 109 APCNFLVFGLGHDSLMWSTLNYG-GRTIFLEEDEAWIEQIRRRFPMLES--YH-V---TYDSKVNQAENLMDVGKGPECT 181 (295)
Q Consensus 109 aPCNfLVFGLg~dslmW~alN~g-GrTvFLeEd~~~i~~v~~~~p~lea--y~-V---~Y~t~~~ea~~LL~~~r~~~C~ 181 (295)
.|-++||.|.|--.+.-..+.++ .+-+.+|=|+.-++..++.+|.+.. ++ - +.+-...||.+.|+....
T Consensus 188 ~pkrVL~IGgG~G~~arellk~~~~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~---- 263 (364)
T 2qfm_A 188 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAK---- 263 (364)
T ss_dssp TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHH----
T ss_pred CCCEEEEEECChhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhc----
Confidence 57899999999999888888876 4678999999999999999886532 11 0 223334566666653210
Q ss_pred CCCCCCCccccccccCCChhhhcccccEEEEeCCCCCCCCCCCchhhhhhhhhhhh-------c-cCCCC--ceEE---E
Q 043166 182 AIGDPKYSMCQLALKGLPAEVYDIKWDLIMVDAPTGYYEEAPGRMTAIYTAGMMAR-------N-REDGD--TDVF---V 248 (295)
Q Consensus 182 p~~~~~~S~CkLAl~~LP~evYe~~WDvImVDgP~Gy~~eaPGRM~aIyTAavmAR-------~-r~~g~--TdVf---V 248 (295)
-+-.+|||++|.|.+-...+|++ .||.....+ . +.+|. +..= +
T Consensus 264 ---------------------~~~~fDvII~D~~d~P~~~~p~~---L~t~eFy~~~~~~~~~~L~pgGilv~qs~s~~~ 319 (364)
T 2qfm_A 264 ---------------------EGREFDYVINDLTAVPISTSPEE---DSTWEFLRLILDLSMKVLKQDGKYFTQGNCVNL 319 (364)
T ss_dssp ---------------------HTCCEEEEEEECCSSCCCCC-------CHHHHHHHHHHHHHHTEEEEEEEEEEEEETTC
T ss_pred ---------------------cCCCceEEEECCCCcccCcCchh---hhHHHHHHHHHHHHHhhCCCCcEEEEEcCCcch
Confidence 02369999999976211224544 344433322 2 22341 2222 2
Q ss_pred ecCChhHHHHHHHhhcccccc------cccccceeeeEecCC
Q 043166 249 HDVNREVEDNFSKAFLCEGYM------KKQEGRIRHFNIPSH 284 (295)
Q Consensus 249 HDVdR~VE~~~s~eFLC~~nl------v~~~GrL~HF~Ip~~ 284 (295)
.++-+..|+.+..-| |.-.. |-+-+.+|=|.+-++
T Consensus 320 ~e~~~~~~~~l~~~F-~~v~~~~~~~~vPsy~~~w~f~~~~k 360 (364)
T 2qfm_A 320 TEALSLYEEQLGRLY-CPVEFSKEIVCVPSYLELWVFYTVWK 360 (364)
T ss_dssp HHHHHHHHHHHTTSS-SCEEEEEEEECCGGGSSCEEEEEEEE
T ss_pred HHHHHHHHHHHHHhC-CceEEeeEeeecCCchhheEeEEeec
Confidence 333356666666555 32222 333434787777543
No 4
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=87.04 E-value=1.4 Score=40.83 Aligned_cols=81 Identities=17% Similarity=0.189 Sum_probs=54.5
Q ss_pred CccEEeeccCchhhhhhhhc--cCCceeEeccChHHHHHHHhhCCCceeEEeeecchhhhHHHHHhhcCCCCCCCCCCCC
Q 043166 110 PCNFLVFGLGHDSLMWSTLN--YGGRTIFLEEDEAWIEQIRRRFPMLESYHVTYDSKVNQAENLMDVGKGPECTAIGDPK 187 (295)
Q Consensus 110 PCNfLVFGLg~dslmW~alN--~gGrTvFLeEd~~~i~~v~~~~p~leay~V~Y~t~~~ea~~LL~~~r~~~C~p~~~~~ 187 (295)
|.++|+.|.|--++.-..+. ++.+.+-+|=|+..++..++.++....-.|+ -...++.+.++
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~--v~~~Da~~~l~-------------- 153 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVK--IRVDDARMVAE-------------- 153 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEE--EEESCHHHHHH--------------
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceE--EEECcHHHHHh--------------
Confidence 55999999998877655554 5778889999999999999887643111111 12345555543
Q ss_pred CccccccccCCChhhhcccccEEEEeCCCCCC
Q 043166 188 YSMCQLALKGLPAEVYDIKWDLIMVDAPTGYY 219 (295)
Q Consensus 188 ~S~CkLAl~~LP~evYe~~WDvImVDgP~Gy~ 219 (295)
.++ +-.+|+|++|.+.+..
T Consensus 154 ---------~~~----~~~fDvIi~D~~~~~~ 172 (317)
T 3gjy_A 154 ---------SFT----PASRDVIIRDVFAGAI 172 (317)
T ss_dssp ---------TCC----TTCEEEEEECCSTTSC
T ss_pred ---------hcc----CCCCCEEEECCCCccc
Confidence 122 2469999999887653
No 5
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=86.39 E-value=2.4 Score=39.15 Aligned_cols=51 Identities=16% Similarity=0.243 Sum_probs=41.3
Q ss_pred HHHhhcCCccEEeeccCchhhhhhhhccC--CceeEeccChHHHHHHHhhCCC
Q 043166 103 RVLEKKAPCNFLVFGLGHDSLMWSTLNYG--GRTIFLEEDEAWIEQIRRRFPM 153 (295)
Q Consensus 103 ~VL~~raPCNfLVFGLg~dslmW~alN~g--GrTvFLeEd~~~i~~v~~~~p~ 153 (295)
-++....|=|.||.|+|-.+.+-..+.|. -+.+.+|=|+.-|+-.++-+|.
T Consensus 77 ~l~~~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~ 129 (294)
T 3o4f_A 77 PLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPN 129 (294)
T ss_dssp HHHHSSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHH
T ss_pred HHhhCCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCcc
Confidence 34455789999999999999998888874 4778899999999877766553
No 6
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=86.35 E-value=2.3 Score=35.07 Aligned_cols=77 Identities=17% Similarity=0.177 Sum_probs=59.5
Q ss_pred ChhHHHhhhhhhcCCCC-ccccHHHHHHHHHHHhhcCCccEEeeccCc--hhhhhhh-hccCCceeEeccChHHHHHHHh
Q 043166 74 PRSLAQALIHYSTSTIT-PQQTLKEISVSARVLEKKAPCNFLVFGLGH--DSLMWST-LNYGGRTIFLEEDEAWIEQIRR 149 (295)
Q Consensus 74 P~~v~~AlvhYatsn~t-pqqt~~Ei~~~~~VL~~raPCNfLVFGLg~--dslmW~a-lN~gGrTvFLeEd~~~i~~v~~ 149 (295)
|.++.+++-+|+..+.- .+.+......+..++....|-++|=.|-|. -++.++. ++++|+-+-+|-++..++.+++
T Consensus 22 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~ 101 (221)
T 3u81_A 22 PQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQ 101 (221)
T ss_dssp HHHHHHHHHHHHHHHTCGGGCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcCcCcccCHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHH
Confidence 66899999999975443 467777777778888878999999998755 4444444 3568899999999999988876
Q ss_pred h
Q 043166 150 R 150 (295)
Q Consensus 150 ~ 150 (295)
+
T Consensus 102 ~ 102 (221)
T 3u81_A 102 M 102 (221)
T ss_dssp H
T ss_pred H
Confidence 4
No 7
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=85.50 E-value=2 Score=38.51 Aligned_cols=49 Identities=16% Similarity=0.259 Sum_probs=37.9
Q ss_pred HHhhcCCccEEeeccCchhhhhhhhcc--CCceeEeccChHHHHHHHhhCC
Q 043166 104 VLEKKAPCNFLVFGLGHDSLMWSTLNY--GGRTIFLEEDEAWIEQIRRRFP 152 (295)
Q Consensus 104 VL~~raPCNfLVFGLg~dslmW~alN~--gGrTvFLeEd~~~i~~v~~~~p 152 (295)
.+....|-++|+.|.|-..+.-..+.+ .++-+.+|=|+.-++..++..+
T Consensus 78 l~~~~~~~~VLdiG~G~G~~~~~l~~~~~~~~V~~VDid~~vi~~ar~~~~ 128 (294)
T 3adn_A 78 LLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLP 128 (294)
T ss_dssp HHHSTTCCEEEEESCTTCHHHHHHHTCTTCCEEEEECSCTTHHHHHHHHCH
T ss_pred HhcCCCCCEEEEEeCChhHHHHHHHhCCCCCEEEEEECCHHHHHHHHHhhh
Confidence 344467999999999998877666665 3567789999999988887654
No 8
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=84.81 E-value=3.3 Score=36.38 Aligned_cols=46 Identities=22% Similarity=0.366 Sum_probs=38.2
Q ss_pred hcCCccEEeeccCchhhhhhhhcc-C-CceeEeccChHHHHHHHhhCC
Q 043166 107 KKAPCNFLVFGLGHDSLMWSTLNY-G-GRTIFLEEDEAWIEQIRRRFP 152 (295)
Q Consensus 107 ~raPCNfLVFGLg~dslmW~alN~-g-GrTvFLeEd~~~i~~v~~~~p 152 (295)
...|-++|+.|.|-..+.-..+.+ | ++-+.+|-|+.-++..++..+
T Consensus 73 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~ 120 (275)
T 1iy9_A 73 HPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLP 120 (275)
T ss_dssp SSSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCH
T ss_pred CCCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhH
Confidence 457899999999988887777766 3 688999999999998888664
No 9
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=82.52 E-value=6.4 Score=32.94 Aligned_cols=77 Identities=10% Similarity=0.032 Sum_probs=57.7
Q ss_pred ChhHHHhhhhhhcCCCCc--cccHHHHHHHHHHHhhcCCccEEeeccCch--hhhhhhhc-cCCceeEeccChHHHHHHH
Q 043166 74 PRSLAQALIHYSTSTITP--QQTLKEISVSARVLEKKAPCNFLVFGLGHD--SLMWSTLN-YGGRTIFLEEDEAWIEQIR 148 (295)
Q Consensus 74 P~~v~~AlvhYatsn~tp--qqt~~Ei~~~~~VL~~raPCNfLVFGLg~d--slmW~alN-~gGrTvFLeEd~~~i~~v~ 148 (295)
+.+++.++-+++..+..| +....+...+..+++...|-++|-+|-|.- ++.++... .+|+-+.+|-++.+++..+
T Consensus 35 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~ 114 (232)
T 3cbg_A 35 DSFYLAQLRRETAHLPGAPMQISPEQAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAK 114 (232)
T ss_dssp CCHHHHHHHHHTTTSTTGGGSCCHHHHHHHHHHHHHHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCccCcCHHHHHHHHHHHHhcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence 457888888998776667 557777777777777778899999987654 33444333 3789999999999998877
Q ss_pred hh
Q 043166 149 RR 150 (295)
Q Consensus 149 ~~ 150 (295)
+.
T Consensus 115 ~~ 116 (232)
T 3cbg_A 115 KY 116 (232)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 10
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=81.50 E-value=6 Score=32.59 Aligned_cols=77 Identities=14% Similarity=0.178 Sum_probs=58.1
Q ss_pred ChhHHHhhhhhhcCCCCccccHHHHHHHHHHHhhcCCccEEeeccCc--hhhhhhhhccCCceeEeccChHHHHHHHhh
Q 043166 74 PRSLAQALIHYSTSTITPQQTLKEISVSARVLEKKAPCNFLVFGLGH--DSLMWSTLNYGGRTIFLEEDEAWIEQIRRR 150 (295)
Q Consensus 74 P~~v~~AlvhYatsn~tpqqt~~Ei~~~~~VL~~raPCNfLVFGLg~--dslmW~alN~gGrTvFLeEd~~~i~~v~~~ 150 (295)
+.++++.+-+|+..+..+.........+...+....+-++|.+|-|. -+..++...++++-+-+|-++..++.++++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~ 97 (233)
T 2gpy_A 19 RDQYIEQMEREAHEQQVPIMDLLGMESLLHLLKMAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKH 97 (233)
T ss_dssp CCHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH
Confidence 56788888999866666666666677777777778888999997765 444555555578888999999988877765
No 11
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=80.45 E-value=5 Score=35.29 Aligned_cols=50 Identities=28% Similarity=0.295 Sum_probs=40.3
Q ss_pred HhhcCCccEEeeccCchhhhhhhhcc--CCceeEeccChHHHHHHHhhCCCc
Q 043166 105 LEKKAPCNFLVFGLGHDSLMWSTLNY--GGRTIFLEEDEAWIEQIRRRFPML 154 (295)
Q Consensus 105 L~~raPCNfLVFGLg~dslmW~alN~--gGrTvFLeEd~~~i~~v~~~~p~l 154 (295)
+....|-++|+.|.|...+.-..+.+ +++-+.+|=|+.-++..++..+.+
T Consensus 74 ~~~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~ 125 (283)
T 2i7c_A 74 TVSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNI 125 (283)
T ss_dssp TTSSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTT
T ss_pred hcCCCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHh
Confidence 33457889999999988877766665 468899999999999998877653
No 12
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=80.24 E-value=7.6 Score=32.30 Aligned_cols=78 Identities=13% Similarity=0.126 Sum_probs=57.3
Q ss_pred ChhHHHhhhhhhcCCCCc--cccHHHHHHHHHHHhhcCCccEEeeccCc--hhhhhhhhcc-CCceeEeccChHHHHHHH
Q 043166 74 PRSLAQALIHYSTSTITP--QQTLKEISVSARVLEKKAPCNFLVFGLGH--DSLMWSTLNY-GGRTIFLEEDEAWIEQIR 148 (295)
Q Consensus 74 P~~v~~AlvhYatsn~tp--qqt~~Ei~~~~~VL~~raPCNfLVFGLg~--dslmW~alN~-gGrTvFLeEd~~~i~~v~ 148 (295)
+..+++.+-.|+..+..| +........+...+....+-++|..|-|. .+..++...+ +++-+-+|-++..++..+
T Consensus 23 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~ 102 (239)
T 2hnk_A 23 EPDSFLKLRKETGTLAQANMQISPEEGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVAR 102 (239)
T ss_dssp CCHHHHHHHHHHHTC---CCSCCHHHHHHHHHHHHHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCcccccCHHHHHHHHHHHHhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence 456788888998877777 55677777777777778899999997754 4555555544 789999999999998887
Q ss_pred hhC
Q 043166 149 RRF 151 (295)
Q Consensus 149 ~~~ 151 (295)
+..
T Consensus 103 ~~~ 105 (239)
T 2hnk_A 103 KYW 105 (239)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 13
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=79.75 E-value=8.3 Score=31.21 Aligned_cols=78 Identities=17% Similarity=0.181 Sum_probs=57.4
Q ss_pred ChhHHHhhhhhhcCCCCccccHHHHHHHHHHHhhcCCccEEeeccCch--hhhhhhhcc-CCceeEeccChHHHHHHHhh
Q 043166 74 PRSLAQALIHYSTSTITPQQTLKEISVSARVLEKKAPCNFLVFGLGHD--SLMWSTLNY-GGRTIFLEEDEAWIEQIRRR 150 (295)
Q Consensus 74 P~~v~~AlvhYatsn~tpqqt~~Ei~~~~~VL~~raPCNfLVFGLg~d--slmW~alN~-gGrTvFLeEd~~~i~~v~~~ 150 (295)
+.++...+-+|+..+..|..+......+..+++...|-++|-.|-|.- +..++...+ +|+-+-+|-++..++..+++
T Consensus 21 ~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~ 100 (210)
T 3c3p_A 21 ADPVVAAMEQIARERNIPIVDRQTGRLLYLLARIKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRM 100 (210)
T ss_dssp CCHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHhhCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHH
Confidence 356788889998766667766666666666666678899999987654 444444444 78888999999998887765
Q ss_pred C
Q 043166 151 F 151 (295)
Q Consensus 151 ~ 151 (295)
.
T Consensus 101 ~ 101 (210)
T 3c3p_A 101 L 101 (210)
T ss_dssp H
T ss_pred H
Confidence 3
No 14
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=77.17 E-value=9.7 Score=32.12 Aligned_cols=78 Identities=6% Similarity=-0.025 Sum_probs=59.2
Q ss_pred ChhHHHhhhhhhcCCCCccccHHHHHHHHHHHhhcCCc---cEEeeccCch--hhhhhh-hccCCceeEeccChHHHHHH
Q 043166 74 PRSLAQALIHYSTSTITPQQTLKEISVSARVLEKKAPC---NFLVFGLGHD--SLMWST-LNYGGRTIFLEEDEAWIEQI 147 (295)
Q Consensus 74 P~~v~~AlvhYatsn~tpqqt~~Ei~~~~~VL~~raPC---NfLVFGLg~d--slmW~a-lN~gGrTvFLeEd~~~i~~v 147 (295)
+.++++.+..|+..+..|..+...-..+..+++...|- ++|=.|-|.. ++.++. +.++|+-+-+|-|+.+++.+
T Consensus 18 ~~~~l~~~~~~a~~~~~p~i~~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a 97 (221)
T 3dr5_A 18 TDAAVARAREDAAEFGLPAPDEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQA 97 (221)
T ss_dssp CCHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHH
Confidence 56788899999987777777777777777666666666 8999988765 333333 45689999999999999888
Q ss_pred HhhC
Q 043166 148 RRRF 151 (295)
Q Consensus 148 ~~~~ 151 (295)
+++.
T Consensus 98 ~~~~ 101 (221)
T 3dr5_A 98 KALF 101 (221)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
No 15
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=76.20 E-value=8.8 Score=34.74 Aligned_cols=50 Identities=20% Similarity=0.341 Sum_probs=39.4
Q ss_pred HhhcCCccEEeeccCchhhhhhhhcc--CCceeEeccChHHHHHHHhhCCCc
Q 043166 105 LEKKAPCNFLVFGLGHDSLMWSTLNY--GGRTIFLEEDEAWIEQIRRRFPML 154 (295)
Q Consensus 105 L~~raPCNfLVFGLg~dslmW~alN~--gGrTvFLeEd~~~i~~v~~~~p~l 154 (295)
+....|-++|+.|.|.-...-..+.+ +++-+.+|=|+..++..++..+.+
T Consensus 104 ~~~~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~ 155 (314)
T 2b2c_A 104 FAHPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGM 155 (314)
T ss_dssp HHSSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTT
T ss_pred hhCCCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHh
Confidence 34467899999999987766555554 578999999999999999887653
No 16
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=76.02 E-value=7.1 Score=32.59 Aligned_cols=77 Identities=13% Similarity=0.200 Sum_probs=56.6
Q ss_pred ChhHHHhhhhhhcCCCCccccHHHHHHHHHHHhhcCCccEEeeccCch--hhhhhhhccCCceeEeccChHHHHHHHhh
Q 043166 74 PRSLAQALIHYSTSTITPQQTLKEISVSARVLEKKAPCNFLVFGLGHD--SLMWSTLNYGGRTIFLEEDEAWIEQIRRR 150 (295)
Q Consensus 74 P~~v~~AlvhYatsn~tpqqt~~Ei~~~~~VL~~raPCNfLVFGLg~d--slmW~alN~gGrTvFLeEd~~~i~~v~~~ 150 (295)
+..+.+++..|+..+..|.+.......+...+....+-++|=.|-|.- +..++...++++-+-+|=++..++..+++
T Consensus 36 ~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~ 114 (232)
T 3ntv_A 36 QNSSIEVLREFAEVNEVPIVDRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQN 114 (232)
T ss_dssp GCCGGGGHHHHHHHTTCCCCCHHHHHHHHHHHHHHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhhcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH
Confidence 345677888888666667666666677777777788999999977554 44445444688888999999988877654
No 17
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=74.53 E-value=15 Score=30.91 Aligned_cols=78 Identities=12% Similarity=-0.036 Sum_probs=56.1
Q ss_pred ChhHHHhhhhhhcCCCCc--cccHHHHHHHHHHHhhcCCccEEeeccCch--hhhhhhhcc-CCceeEeccChHHHHHHH
Q 043166 74 PRSLAQALIHYSTSTITP--QQTLKEISVSARVLEKKAPCNFLVFGLGHD--SLMWSTLNY-GGRTIFLEEDEAWIEQIR 148 (295)
Q Consensus 74 P~~v~~AlvhYatsn~tp--qqt~~Ei~~~~~VL~~raPCNfLVFGLg~d--slmW~alN~-gGrTvFLeEd~~~i~~v~ 148 (295)
+.+++.++..|+..+..| +.+......+..+++...|-++|-.|-|.. ++.++...+ +|+-+-+|-|+.+++..+
T Consensus 33 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~ 112 (237)
T 3c3y_A 33 EAGFLKELREANESHPDSYMSTSPLAGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGL 112 (237)
T ss_dssp SCHHHHHHHHHHTTSTTGGGSCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence 457888899998665543 445666666666677778999999987654 344443333 899999999999998887
Q ss_pred hhC
Q 043166 149 RRF 151 (295)
Q Consensus 149 ~~~ 151 (295)
+..
T Consensus 113 ~~~ 115 (237)
T 3c3y_A 113 PFI 115 (237)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 18
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=73.59 E-value=15 Score=29.77 Aligned_cols=77 Identities=16% Similarity=0.006 Sum_probs=56.3
Q ss_pred ChhHHHhhhhhhcC--CCCccccHHHHHHHHHHHhhcCCccEEeeccCch--hhhhhhhcc-CCceeEeccChHHHHHHH
Q 043166 74 PRSLAQALIHYSTS--TITPQQTLKEISVSARVLEKKAPCNFLVFGLGHD--SLMWSTLNY-GGRTIFLEEDEAWIEQIR 148 (295)
Q Consensus 74 P~~v~~AlvhYats--n~tpqqt~~Ei~~~~~VL~~raPCNfLVFGLg~d--slmW~alN~-gGrTvFLeEd~~~i~~v~ 148 (295)
+..+.+++-.++.. +..++.+......+..+++...+.++|-+|-|.- ++.++...+ +++-+-+|-++..++..+
T Consensus 32 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~ 111 (229)
T 2avd_A 32 EHPALRSLRLLTLEQPQGDSMMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGR 111 (229)
T ss_dssp CCHHHHHHHHHHHTSTTGGGSCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence 35677888888865 3445777777777777777788999999987654 444444434 788889999999988777
Q ss_pred hh
Q 043166 149 RR 150 (295)
Q Consensus 149 ~~ 150 (295)
+.
T Consensus 112 ~~ 113 (229)
T 2avd_A 112 PL 113 (229)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 19
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=73.10 E-value=6.1 Score=35.38 Aligned_cols=46 Identities=20% Similarity=0.310 Sum_probs=36.8
Q ss_pred hcCCccEEeeccCchhhhhhhhcc--CCceeEeccChHHHHHHHhhCC
Q 043166 107 KKAPCNFLVFGLGHDSLMWSTLNY--GGRTIFLEEDEAWIEQIRRRFP 152 (295)
Q Consensus 107 ~raPCNfLVFGLg~dslmW~alN~--gGrTvFLeEd~~~i~~v~~~~p 152 (295)
...|-++|+.|.|.-.+.-..+.+ .++-+.+|-|+..++..++..+
T Consensus 93 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~ 140 (304)
T 2o07_A 93 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLP 140 (304)
T ss_dssp SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCH
T ss_pred CCCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhH
Confidence 357889999999887766655555 3688999999999998888754
No 20
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=72.62 E-value=16 Score=29.63 Aligned_cols=76 Identities=16% Similarity=0.195 Sum_probs=53.8
Q ss_pred hhHHHhhhhhhcCCCCccc--cHHHHHHHHHHHhhcCCccEEeeccCch--hhhhhhhcc-CCceeEeccChHHHHHHHh
Q 043166 75 RSLAQALIHYSTSTITPQQ--TLKEISVSARVLEKKAPCNFLVFGLGHD--SLMWSTLNY-GGRTIFLEEDEAWIEQIRR 149 (295)
Q Consensus 75 ~~v~~AlvhYatsn~tpqq--t~~Ei~~~~~VL~~raPCNfLVFGLg~d--slmW~alN~-gGrTvFLeEd~~~i~~v~~ 149 (295)
..+.+.+.+++..+..|.+ +......+..++....|-++|-.|-|.- +..++...+ +|+-+-+|-++..++.+++
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~ 101 (223)
T 3duw_A 22 DSTLEEVLQVNAAANLPAHDVSPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARS 101 (223)
T ss_dssp CHHHHHHHHHHHHTTCCSCSCCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHH
T ss_pred CHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH
Confidence 4567888888876666654 3555556666666688999999987654 444444444 7888889999999887775
Q ss_pred h
Q 043166 150 R 150 (295)
Q Consensus 150 ~ 150 (295)
+
T Consensus 102 ~ 102 (223)
T 3duw_A 102 N 102 (223)
T ss_dssp H
T ss_pred H
Confidence 4
No 21
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=72.07 E-value=17 Score=31.82 Aligned_cols=47 Identities=26% Similarity=0.279 Sum_probs=37.4
Q ss_pred HhhcCCccEEeeccCchhhhhhhhcc-CCceeEeccChHHHHHHHhhC
Q 043166 105 LEKKAPCNFLVFGLGHDSLMWSTLNY-GGRTIFLEEDEAWIEQIRRRF 151 (295)
Q Consensus 105 L~~raPCNfLVFGLg~dslmW~alN~-gGrTvFLeEd~~~i~~v~~~~ 151 (295)
+....|.++|+.|.|.-.+.-..+.+ .++-+.+|=|+..++..++..
T Consensus 71 ~~~~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~ 118 (281)
T 1mjf_A 71 LAHPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI 118 (281)
T ss_dssp HHSSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT
T ss_pred hhCCCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH
Confidence 33467899999999988776666665 458889999999999888765
No 22
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=71.71 E-value=12 Score=33.75 Aligned_cols=50 Identities=28% Similarity=0.287 Sum_probs=40.3
Q ss_pred HHhhcCCccEEeeccCchhhhhhhhcc--CCceeEeccChHHHHHHHhhCCC
Q 043166 104 VLEKKAPCNFLVFGLGHDSLMWSTLNY--GGRTIFLEEDEAWIEQIRRRFPM 153 (295)
Q Consensus 104 VL~~raPCNfLVFGLg~dslmW~alN~--gGrTvFLeEd~~~i~~v~~~~p~ 153 (295)
.+....|-++|+.|.|...+.-..+.+ +++-+.+|=|+.-++..++..+.
T Consensus 111 l~~~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~ 162 (321)
T 2pt6_A 111 MTVSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKN 162 (321)
T ss_dssp HHHSSSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTT
T ss_pred HhcCCCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHh
Confidence 334467899999999988877766665 56888999999999999887765
No 23
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=71.71 E-value=14 Score=31.68 Aligned_cols=78 Identities=10% Similarity=-0.015 Sum_probs=55.4
Q ss_pred ChhHHHhhhhhhcCCCCc--cccHHHHHHHHHHHhhcCCccEEeeccCch--hhhhhhhcc-CCceeEeccChHHHHHHH
Q 043166 74 PRSLAQALIHYSTSTITP--QQTLKEISVSARVLEKKAPCNFLVFGLGHD--SLMWSTLNY-GGRTIFLEEDEAWIEQIR 148 (295)
Q Consensus 74 P~~v~~AlvhYatsn~tp--qqt~~Ei~~~~~VL~~raPCNfLVFGLg~d--slmW~alN~-gGrTvFLeEd~~~i~~v~ 148 (295)
+..+++++.+|+..+..| +.+...-..+..+++...|-++|-.|-|.- ++.++...+ +|+-+-+|-++.+++..+
T Consensus 42 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~ 121 (247)
T 1sui_A 42 EHEAMKELREVTAKHPWNIMTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGL 121 (247)
T ss_dssp CTTHHHHHHHHHHTSTTGGGSCCHHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHhhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence 456888899998665543 445555666666666678899999988664 333333333 889999999999998887
Q ss_pred hhC
Q 043166 149 RRF 151 (295)
Q Consensus 149 ~~~ 151 (295)
+..
T Consensus 122 ~~~ 124 (247)
T 1sui_A 122 PVI 124 (247)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 24
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=68.10 E-value=6.9 Score=34.74 Aligned_cols=46 Identities=22% Similarity=0.374 Sum_probs=37.4
Q ss_pred hcCCccEEeeccCchhhhhhhhcc--CCceeEeccChHHHHHHHhhCC
Q 043166 107 KKAPCNFLVFGLGHDSLMWSTLNY--GGRTIFLEEDEAWIEQIRRRFP 152 (295)
Q Consensus 107 ~raPCNfLVFGLg~dslmW~alN~--gGrTvFLeEd~~~i~~v~~~~p 152 (295)
...|-++|+.|.|.-.+.-..+.+ +++-+.+|=|+..++..++..+
T Consensus 93 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~ 140 (304)
T 3bwc_A 93 HPKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFP 140 (304)
T ss_dssp SSSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCH
T ss_pred CCCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhH
Confidence 367889999999988877766665 4688899999999998887664
No 25
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=65.94 E-value=25 Score=29.73 Aligned_cols=78 Identities=12% Similarity=0.106 Sum_probs=54.4
Q ss_pred ChhHHHhhhhhhcCCCCccc--cHHHHHHHHHHHhhcCCccEEeeccCch--hhhhhhhcc-CCceeEeccChHHHHHHH
Q 043166 74 PRSLAQALIHYSTSTITPQQ--TLKEISVSARVLEKKAPCNFLVFGLGHD--SLMWSTLNY-GGRTIFLEEDEAWIEQIR 148 (295)
Q Consensus 74 P~~v~~AlvhYatsn~tpqq--t~~Ei~~~~~VL~~raPCNfLVFGLg~d--slmW~alN~-gGrTvFLeEd~~~i~~v~ 148 (295)
...+++.+..++..+..|.+ +......+..++....|-++|-.|-|.- ++.++...+ +|+-+-+|-++..++.++
T Consensus 26 ~~~~l~~~~~~~~~~~~p~~~~~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~ 105 (248)
T 3tfw_A 26 GDPVLDRVLENNHRAGLPAHDVAANQGQFLALLVRLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVAR 105 (248)
T ss_dssp CCHHHHHHHHHHHHTTCBSCCCCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCccccCHHHHHHHHHHHhhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence 34667788888866666654 3555555656556678999999987654 444444444 788889999999988877
Q ss_pred hhC
Q 043166 149 RRF 151 (295)
Q Consensus 149 ~~~ 151 (295)
++.
T Consensus 106 ~~~ 108 (248)
T 3tfw_A 106 ENL 108 (248)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 26
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=62.10 E-value=27 Score=26.67 Aligned_cols=67 Identities=12% Similarity=0.090 Sum_probs=46.7
Q ss_pred hhcCCCCccccHHHHH-HHHHHHhhcCCccEEeeccCchhhhhhhhccCCceeEeccChHHHHHHHhh
Q 043166 84 YSTSTITPQQTLKEIS-VSARVLEKKAPCNFLVFGLGHDSLMWSTLNYGGRTIFLEEDEAWIEQIRRR 150 (295)
Q Consensus 84 Yatsn~tpqqt~~Ei~-~~~~VL~~raPCNfLVFGLg~dslmW~alN~gGrTvFLeEd~~~i~~v~~~ 150 (295)
|...+..|+.+..++. .+.+.+.-+.+-++|.+|-|...+.......+++-+-+|-++..++..+++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~ 74 (192)
T 1l3i_A 7 FIKNPSVPGPTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMN 74 (192)
T ss_dssp SCCCTTSCCCCCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHH
T ss_pred hhcCCCCCCCChHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHH
Confidence 4444545544545544 344445556778999999988777766666678888899999988877764
No 27
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=60.92 E-value=39 Score=27.22 Aligned_cols=78 Identities=15% Similarity=0.060 Sum_probs=54.3
Q ss_pred ChhHHHhhhhhhc-CCCC--ccccHHHHHHHHHHHhhcCCccEEeeccCch--hhhhhhhcc-CCceeEeccChHHHHHH
Q 043166 74 PRSLAQALIHYST-STIT--PQQTLKEISVSARVLEKKAPCNFLVFGLGHD--SLMWSTLNY-GGRTIFLEEDEAWIEQI 147 (295)
Q Consensus 74 P~~v~~AlvhYat-sn~t--pqqt~~Ei~~~~~VL~~raPCNfLVFGLg~d--slmW~alN~-gGrTvFLeEd~~~i~~v 147 (295)
+..+++.+-+|+. ...- .+.+......+..++....|.++|-.|-|.- +..++...+ +++-+-+|-++..++.+
T Consensus 26 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a 105 (225)
T 3tr6_A 26 EPPLLAELREETTRSFSTYAMQTAPEQAQLLALLVKLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALA 105 (225)
T ss_dssp CCHHHHHHHHHHHHHCTTGGGSCCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHH
T ss_pred CCHHHHHHHHHHHhhCCCCccccCHHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHH
Confidence 4467777877775 4433 3455666667777777778999999977554 444444333 78888999999998887
Q ss_pred HhhC
Q 043166 148 RRRF 151 (295)
Q Consensus 148 ~~~~ 151 (295)
+++.
T Consensus 106 ~~~~ 109 (225)
T 3tr6_A 106 KEYW 109 (225)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
No 28
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=59.32 E-value=16 Score=30.40 Aligned_cols=65 Identities=12% Similarity=0.104 Sum_probs=46.9
Q ss_pred hhcCCCCccccHHHHHHHHHHHhhcCCccEEeeccCchhhhhhhhccCCceeEeccChHHHHHHHhh
Q 043166 84 YSTSTITPQQTLKEISVSARVLEKKAPCNFLVFGLGHDSLMWSTLNYGGRTIFLEEDEAWIEQIRRR 150 (295)
Q Consensus 84 Yatsn~tpqqt~~Ei~~~~~VL~~raPCNfLVFGLg~dslmW~alN~gGrTvFLeEd~~~i~~v~~~ 150 (295)
|.+|. .+.+.+++..+.+.+..+.+-++|-+|-|...+.......+++.+-+|-++..++..+++
T Consensus 14 ~~~s~--~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~ 78 (260)
T 1vl5_A 14 YVTSQ--IHAKGSDLAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAF 78 (260)
T ss_dssp -----------CCCHHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHH
T ss_pred eecCc--cccCHHHHHHHHHHhCCCCCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHH
Confidence 55443 255667778888888878889999999998887777777788888999999999887765
No 29
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=53.26 E-value=52 Score=24.93 Aligned_cols=59 Identities=12% Similarity=-0.003 Sum_probs=42.7
Q ss_pred cccHHHHHHHHHHHhhcCCccEEeeccCchhhhhhhhccCCceeEeccChHHHHHHHhh
Q 043166 92 QQTLKEISVSARVLEKKAPCNFLVFGLGHDSLMWSTLNYGGRTIFLEEDEAWIEQIRRR 150 (295)
Q Consensus 92 qqt~~Ei~~~~~VL~~raPCNfLVFGLg~dslmW~alN~gGrTvFLeEd~~~i~~v~~~ 150 (295)
..+..-...+.+.+....+-++|=+|-|.-.+......++++.+-+|-++..++..+++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~ 76 (183)
T 2yxd_A 18 ITKEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQN 76 (183)
T ss_dssp CCCHHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHH
Confidence 33444445556666556677999998888776666566777888899999998887765
No 30
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=53.21 E-value=24 Score=28.24 Aligned_cols=60 Identities=25% Similarity=0.276 Sum_probs=43.2
Q ss_pred ccccHHHH-HHHHHHHhhcCCccEEeeccCchh--hhhhhhccCCceeEeccChHHHHHHHhh
Q 043166 91 PQQTLKEI-SVSARVLEKKAPCNFLVFGLGHDS--LMWSTLNYGGRTIFLEEDEAWIEQIRRR 150 (295)
Q Consensus 91 pqqt~~Ei-~~~~~VL~~raPCNfLVFGLg~ds--lmW~alN~gGrTvFLeEd~~~i~~v~~~ 150 (295)
.+++..|+ ..+...+.-+...++|-+|-|... ..++...++++-+-+|-++..++.++++
T Consensus 21 g~~~~~~i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~ 83 (204)
T 3e05_A 21 KLITKQEVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDN 83 (204)
T ss_dssp TTSCCHHHHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHH
T ss_pred CcCChHHHHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH
Confidence 45578888 455556655677899999876554 4555555568888899999998887765
No 31
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=48.97 E-value=72 Score=26.38 Aligned_cols=61 Identities=18% Similarity=0.134 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhhc--CCccEEeeccCchhhhhhhhccCCceeEeccChHHHHHHHhhCCCce
Q 043166 95 LKEISVSARVLEKK--APCNFLVFGLGHDSLMWSTLNYGGRTIFLEEDEAWIEQIRRRFPMLE 155 (295)
Q Consensus 95 ~~Ei~~~~~VL~~r--aPCNfLVFGLg~dslmW~alN~gGrTvFLeEd~~~i~~v~~~~p~le 155 (295)
..+...+.+.|.+. .+.++|=+|-|...+.......|.+.+-+|=++..++.++++.++++
T Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~ 96 (263)
T 3pfg_A 34 HREAADLAALVRRHSPKAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRNPDAV 96 (263)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEETCTTSHHHHHHTTTSSEEEEEESCHHHHHHHHHHCTTSE
T ss_pred HHHHHHHHHHHHhhCCCCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCCCE
Confidence 34556666777664 35899999999888887777778888999999999999998876443
No 32
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=48.46 E-value=47 Score=25.32 Aligned_cols=60 Identities=18% Similarity=0.140 Sum_probs=41.2
Q ss_pred ccccHHHHHH-HHHHHhhcCCccEEeeccCchhhhhh--hhccCCceeEeccChHHHHHHHhh
Q 043166 91 PQQTLKEISV-SARVLEKKAPCNFLVFGLGHDSLMWS--TLNYGGRTIFLEEDEAWIEQIRRR 150 (295)
Q Consensus 91 pqqt~~Ei~~-~~~VL~~raPCNfLVFGLg~dslmW~--alN~gGrTvFLeEd~~~i~~v~~~ 150 (295)
.++|..|+.. +.+.+.-+.+-++|.+|-|.-.+... ...++++-+-+|=++..++..+++
T Consensus 6 g~~t~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~ 68 (178)
T 3hm2_A 6 GQLTKQHVRALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSN 68 (178)
T ss_dssp CCSHHHHHHHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHH
Confidence 4778887763 23333335667999998877655543 344477888889999888877765
No 33
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=47.97 E-value=42 Score=27.31 Aligned_cols=58 Identities=19% Similarity=0.170 Sum_probs=40.9
Q ss_pred ccHHHHHHHHHHHhhcCCccEEeeccCchhhhhhhhccCCceeEeccChHHHHHHHhh
Q 043166 93 QTLKEISVSARVLEKKAPCNFLVFGLGHDSLMWSTLNYGGRTIFLEEDEAWIEQIRRR 150 (295)
Q Consensus 93 qt~~Ei~~~~~VL~~raPCNfLVFGLg~dslmW~alN~gGrTvFLeEd~~~i~~v~~~ 150 (295)
....++..+.+.+.-+..-++|.+|-|.-.+.-.....+++-+.+|-++..++..+++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~ 132 (248)
T 2yvl_A 75 IYPKDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKN 132 (248)
T ss_dssp CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHH
T ss_pred ccchhHHHHHHhcCCCCCCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHH
Confidence 3456666666666656778999998876554444444477888888899988877754
No 34
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=46.13 E-value=20 Score=27.54 Aligned_cols=54 Identities=7% Similarity=0.148 Sum_probs=40.2
Q ss_pred HHHHhhcCCccEEeeccCchhhhhhhhccCCceeEeccChHHHHHHHhhCCCce
Q 043166 102 ARVLEKKAPCNFLVFGLGHDSLMWSTLNYGGRTIFLEEDEAWIEQIRRRFPMLE 155 (295)
Q Consensus 102 ~~VL~~raPCNfLVFGLg~dslmW~alN~gGrTvFLeEd~~~i~~v~~~~p~le 155 (295)
.+.+.-...-++|-+|-|...........+++.+-+|-++..++..+++.++++
T Consensus 10 ~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~v~ 63 (170)
T 3i9f_A 10 LPNIFEGKKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEKFDSVI 63 (170)
T ss_dssp HHHHHSSCCEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHHHHHHHHCTTSE
T ss_pred HHhcCcCCCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHHHHHHHHHhCCCcE
Confidence 344444566799999988877777766666788888999999998888744443
No 35
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=45.71 E-value=73 Score=24.30 Aligned_cols=47 Identities=17% Similarity=0.169 Sum_probs=38.0
Q ss_pred cCCccEEeeccCchhhhhhhhccCCceeEeccChHHHHHHHhhCCCc
Q 043166 108 KAPCNFLVFGLGHDSLMWSTLNYGGRTIFLEEDEAWIEQIRRRFPML 154 (295)
Q Consensus 108 raPCNfLVFGLg~dslmW~alN~gGrTvFLeEd~~~i~~v~~~~p~l 154 (295)
+.+.++|-+|-|...........|.+.+-+|-++..++.++++.+++
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~ 91 (195)
T 3cgg_A 45 PRGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDFPEA 91 (195)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTS
T ss_pred cCCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHHHHHHHHHhCCCC
Confidence 36779999998887776666666888899999999999998887653
No 36
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=44.08 E-value=32 Score=30.09 Aligned_cols=48 Identities=21% Similarity=0.241 Sum_probs=38.6
Q ss_pred hhcCCccEEeeccCchhhhhhhhccCCceeEeccChHHHHHHHhhCCC
Q 043166 106 EKKAPCNFLVFGLGHDSLMWSTLNYGGRTIFLEEDEAWIEQIRRRFPM 153 (295)
Q Consensus 106 ~~raPCNfLVFGLg~dslmW~alN~gGrTvFLeEd~~~i~~v~~~~p~ 153 (295)
....|-+.|+.|.|--.+.-..+.++++-+.+|=|+..++..++..+.
T Consensus 69 ~~~~~~~VL~iG~G~G~~~~~ll~~~~~v~~veid~~~i~~ar~~~~~ 116 (262)
T 2cmg_A 69 TKKELKEVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPH 116 (262)
T ss_dssp TSSCCCEEEEESSCCHHHHHHHTTSSCEEEEECSCHHHHGGGTTTSTT
T ss_pred cCCCCCEEEEEeCCcCHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHh
Confidence 345688999999998887766666667888899999999888876654
No 37
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=43.06 E-value=80 Score=25.09 Aligned_cols=57 Identities=19% Similarity=0.177 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhhcCCccEEeeccCchhhhhhhhccCCceeEeccChHHHHHHHhhCC
Q 043166 96 KEISVSARVLEKKAPCNFLVFGLGHDSLMWSTLNYGGRTIFLEEDEAWIEQIRRRFP 152 (295)
Q Consensus 96 ~Ei~~~~~VL~~raPCNfLVFGLg~dslmW~alN~gGrTvFLeEd~~~i~~v~~~~p 152 (295)
..+..+.+.+..+.+.++|-+|-|...+.-.....|++.+-+|-++..++..+++.+
T Consensus 32 ~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~ 88 (220)
T 3hnr_A 32 AHYEDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLP 88 (220)
T ss_dssp TTHHHHHHHHHHTCCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHHHHHHHHSC
T ss_pred HHHHHHHHHhhccCCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCC
Confidence 344555666666788899999998887776666678889999999999998888766
No 38
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=42.64 E-value=60 Score=26.73 Aligned_cols=59 Identities=14% Similarity=0.068 Sum_probs=45.4
Q ss_pred cccHHHHHHHHHHHhhcCCccEEeeccCchhhhhhhh---ccCCceeEeccChHHHHHHHhh
Q 043166 92 QQTLKEISVSARVLEKKAPCNFLVFGLGHDSLMWSTL---NYGGRTIFLEEDEAWIEQIRRR 150 (295)
Q Consensus 92 qqt~~Ei~~~~~VL~~raPCNfLVFGLg~dslmW~al---N~gGrTvFLeEd~~~i~~v~~~ 150 (295)
.+..+++..+...+.-+.+.++|-+|-|.-.+.-... +++++-+-+|-++..++.++++
T Consensus 76 ~~~~~~~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~ 137 (255)
T 3mb5_A 76 IVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWEN 137 (255)
T ss_dssp CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHH
T ss_pred cccHhHHHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHH
Confidence 4567888888888887888999999887766544333 4578888899999888877654
No 39
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=41.47 E-value=78 Score=24.87 Aligned_cols=59 Identities=15% Similarity=0.080 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhhcCCccEEeeccCchhhhhhhhccCCceeEeccChHHHHHHHhhCCCce
Q 043166 96 KEISVSARVLEKKAPCNFLVFGLGHDSLMWSTLNYGGRTIFLEEDEAWIEQIRRRFPMLE 155 (295)
Q Consensus 96 ~Ei~~~~~VL~~raPCNfLVFGLg~dslmW~alN~gGrTvFLeEd~~~i~~v~~~~p~le 155 (295)
.+...+...+... +-++|-+|-|...........|.+.+-+|-++..++..+++.++++
T Consensus 29 ~~~~~l~~~~~~~-~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~ 87 (203)
T 3h2b_A 29 PDRVLIEPWATGV-DGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTHPSVT 87 (203)
T ss_dssp TTHHHHHHHHHHC-CSCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHHHHHHHHCTTSE
T ss_pred HHHHHHHHHhccC-CCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhCCCCe
Confidence 3455566666554 8899999988877776666668888899999999999998866543
No 40
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=40.47 E-value=13 Score=30.04 Aligned_cols=17 Identities=18% Similarity=0.126 Sum_probs=14.3
Q ss_pred cccccEEEEeCCCCCCC
Q 043166 204 DIKWDLIMVDAPTGYYE 220 (295)
Q Consensus 204 e~~WDvImVDgP~Gy~~ 220 (295)
.-+.|+|+||+|.|...
T Consensus 129 ~~~yD~viiD~pp~~~~ 145 (254)
T 3kjh_A 129 LDKKEAVVMDMGAGIEH 145 (254)
T ss_dssp HTCCSEEEEEECTTCTT
T ss_pred cCCCCEEEEeCCCcccH
Confidence 45789999999998865
No 41
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=40.01 E-value=13 Score=30.43 Aligned_cols=15 Identities=40% Similarity=0.842 Sum_probs=12.7
Q ss_pred ccccEEEEeCCCCCC
Q 043166 205 IKWDLIMVDAPTGYY 219 (295)
Q Consensus 205 ~~WDvImVDgP~Gy~ 219 (295)
-++|+|+||+|.|..
T Consensus 110 ~~yD~viiD~~~~~~ 124 (237)
T 1g3q_A 110 DKFDFILIDCPAGLQ 124 (237)
T ss_dssp GGCSEEEEECCSSSS
T ss_pred hcCCEEEEECCCCcC
Confidence 468999999998865
No 42
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=39.75 E-value=93 Score=24.41 Aligned_cols=55 Identities=15% Similarity=0.185 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhhcCCccEEeeccCchhhhhhhhccCCceeEeccChHHHHHHHhh
Q 043166 96 KEISVSARVLEKKAPCNFLVFGLGHDSLMWSTLNYGGRTIFLEEDEAWIEQIRRR 150 (295)
Q Consensus 96 ~Ei~~~~~VL~~raPCNfLVFGLg~dslmW~alN~gGrTvFLeEd~~~i~~v~~~ 150 (295)
.....+.+.+..+.|.++|=+|-|.-.........|.+.+-+|-++..++..+++
T Consensus 39 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~ 93 (227)
T 3e8s_A 39 VTDQAILLAILGRQPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARAA 93 (227)
T ss_dssp THHHHHHHHHHHTCCSEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHT
T ss_pred cccHHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHCCCEEEEEcCCHHHHHHHHHh
Confidence 3445566677777899999999988887777777788888999999999998887
No 43
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=39.47 E-value=44 Score=25.13 Aligned_cols=44 Identities=14% Similarity=0.261 Sum_probs=25.0
Q ss_pred ccCCceeEeccChHHHHHHHhhCCCceeEEeeecchhhhHHHHHh
Q 043166 129 NYGGRTIFLEEDEAWIEQIRRRFPMLESYHVTYDSKVNQAENLMD 173 (295)
Q Consensus 129 N~gGrTvFLeEd~~~i~~v~~~~p~leay~V~Y~t~~~ea~~LL~ 173 (295)
+.+.+-+.+|+|+.....++...-.. .|.|..-....+|-++++
T Consensus 5 ~~~~~ILivdd~~~~~~~l~~~L~~~-g~~v~~~~~~~~al~~l~ 48 (154)
T 3gt7_A 5 NRAGEILIVEDSPTQAEHLKHILEET-GYQTEHVRNGREAVRFLS 48 (154)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHHTT-TCEEEEESSHHHHHHHHT
T ss_pred cCCCcEEEEeCCHHHHHHHHHHHHHC-CCEEEEeCCHHHHHHHHH
Confidence 34567788999998766555332221 256655455566666553
No 44
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=39.41 E-value=13 Score=30.15 Aligned_cols=15 Identities=20% Similarity=0.612 Sum_probs=13.0
Q ss_pred ccccEEEEeCCCCCC
Q 043166 205 IKWDLIMVDAPTGYY 219 (295)
Q Consensus 205 ~~WDvImVDgP~Gy~ 219 (295)
-+.|+|+||+|.|..
T Consensus 107 ~~yD~viID~p~~l~ 121 (224)
T 1byi_A 107 QQADWVLVEGAGGWF 121 (224)
T ss_dssp TTCSEEEEECSSSTT
T ss_pred HhCCEEEEEcCCccc
Confidence 368999999999876
No 45
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=37.58 E-value=76 Score=24.18 Aligned_cols=56 Identities=11% Similarity=0.058 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhhcCCccEEeeccCchhhhhhhhccCCceeEeccChHHHHHHHhhC
Q 043166 96 KEISVSARVLEKKAPCNFLVFGLGHDSLMWSTLNYGGRTIFLEEDEAWIEQIRRRF 151 (295)
Q Consensus 96 ~Ei~~~~~VL~~raPCNfLVFGLg~dslmW~alN~gGrTvFLeEd~~~i~~v~~~~ 151 (295)
.....+.+.+..+.+-++|-+|-|...+.-.....+++.+-+|-++..++..+++.
T Consensus 39 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~ 94 (194)
T 1dus_A 39 KGTKILVENVVVDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENI 94 (194)
T ss_dssp HHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHH
T ss_pred hHHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHH
Confidence 55566667776667789999988877665555555788888999999888777553
No 46
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=37.13 E-value=15 Score=31.16 Aligned_cols=16 Identities=25% Similarity=0.461 Sum_probs=13.2
Q ss_pred ccccEEEEeCCCCCCC
Q 043166 205 IKWDLIMVDAPTGYYE 220 (295)
Q Consensus 205 ~~WDvImVDgP~Gy~~ 220 (295)
-++|+|+||+|.|...
T Consensus 127 ~~yD~ViID~pp~~~~ 142 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGD 142 (262)
T ss_dssp CSCSEEEEECCSSSSS
T ss_pred cCCCEEEEECcCCCch
Confidence 4689999999998753
No 47
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=36.64 E-value=58 Score=23.68 Aligned_cols=39 Identities=10% Similarity=0.186 Sum_probs=26.3
Q ss_pred ceeEeccChHHHHHHHhhCCCceeEEeeecchhhhHHHHHh
Q 043166 133 RTIFLEEDEAWIEQIRRRFPMLESYHVTYDSKVNQAENLMD 173 (295)
Q Consensus 133 rTvFLeEd~~~i~~v~~~~p~leay~V~Y~t~~~ea~~LL~ 173 (295)
+-+.+|+|+.....++...-.. |.|..-....+|-++++
T Consensus 5 ~iLivdd~~~~~~~l~~~l~~~--~~v~~~~~~~~a~~~~~ 43 (140)
T 3n53_A 5 KILIIDQQDFSRIELKNFLDSE--YLVIESKNEKEALEQID 43 (140)
T ss_dssp EEEEECSCHHHHHHHHHHHTTT--SEEEEESSHHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHhc--ceEEEeCCHHHHHHHHh
Confidence 4567888888766666554444 77776666777777765
No 48
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=36.12 E-value=93 Score=25.37 Aligned_cols=62 Identities=18% Similarity=0.141 Sum_probs=44.6
Q ss_pred CCccccHHHHHHHHHHHhhcCCccEEeeccCchhhh--hhhh-ccCCceeEeccChHHHHHHHhh
Q 043166 89 ITPQQTLKEISVSARVLEKKAPCNFLVFGLGHDSLM--WSTL-NYGGRTIFLEEDEAWIEQIRRR 150 (295)
Q Consensus 89 ~tpqqt~~Ei~~~~~VL~~raPCNfLVFGLg~dslm--W~al-N~gGrTvFLeEd~~~i~~v~~~ 150 (295)
....+..+++..+...+.-+...++|.+|-|.-.+. ++.. +++++-+-+|-++..++.++++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~ 140 (258)
T 2pwy_A 76 SATPTYPKDASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERN 140 (258)
T ss_dssp SSCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Confidence 334566677777777777677889999988765543 3333 4578888888899988877765
No 49
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=35.62 E-value=37 Score=24.29 Aligned_cols=43 Identities=16% Similarity=0.239 Sum_probs=23.9
Q ss_pred cCCceeEeccChHHHHHHHhhCCCceeEEeeecchhhhHHHHHh
Q 043166 130 YGGRTIFLEEDEAWIEQIRRRFPMLESYHVTYDSKVNQAENLMD 173 (295)
Q Consensus 130 ~gGrTvFLeEd~~~i~~v~~~~p~leay~V~Y~t~~~ea~~LL~ 173 (295)
.+-+-+.+|+|+.....++...-. ..|.|..-....+|-++++
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~-~g~~v~~~~~~~~a~~~l~ 47 (132)
T 3lte_A 5 QSKRILVVDDDQAMAAAIERVLKR-DHWQVEIAHNGFDAGIKLS 47 (132)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHH-TTCEEEEESSHHHHHHHHH
T ss_pred CCccEEEEECCHHHHHHHHHHHHH-CCcEEEEeCCHHHHHHHHH
Confidence 345667888888876554432211 2356655555666666654
No 50
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=35.38 E-value=1.1e+02 Score=24.53 Aligned_cols=60 Identities=22% Similarity=0.189 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhh--cCCccEEeeccCchhhhhhhhccCCceeEeccChHHHHHHHhhCCCce
Q 043166 96 KEISVSARVLEK--KAPCNFLVFGLGHDSLMWSTLNYGGRTIFLEEDEAWIEQIRRRFPMLE 155 (295)
Q Consensus 96 ~Ei~~~~~VL~~--raPCNfLVFGLg~dslmW~alN~gGrTvFLeEd~~~i~~v~~~~p~le 155 (295)
.+...+.+.|.+ ..+-++|=+|-|...........+.+.+-+|-++..++..+++.++++
T Consensus 25 ~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~ 86 (239)
T 3bxo_A 25 AEASDIADLVRSRTPEASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRLPDAT 86 (239)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHHHHHHHHCTTCE
T ss_pred HHHHHHHHHHHHhcCCCCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhCCCCE
Confidence 445556666665 356789999888776666555566688889999999999988876543
No 51
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=35.36 E-value=1.1e+02 Score=24.54 Aligned_cols=60 Identities=12% Similarity=0.139 Sum_probs=47.0
Q ss_pred cccHHHHHHHHHHHhhcCCccEEeeccCchhhhhhhhccC--CceeEeccChHHHHHHHhhC
Q 043166 92 QQTLKEISVSARVLEKKAPCNFLVFGLGHDSLMWSTLNYG--GRTIFLEEDEAWIEQIRRRF 151 (295)
Q Consensus 92 qqt~~Ei~~~~~VL~~raPCNfLVFGLg~dslmW~alN~g--GrTvFLeEd~~~i~~v~~~~ 151 (295)
+.....+..+.+.+....+-++|=+|-|.-.+.......+ .+.+-+|-++..++..+++.
T Consensus 12 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~ 73 (217)
T 3jwh_A 12 SLNQQRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERL 73 (217)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHH
Confidence 6667778888888888889999999888776665555444 57788888999888887764
No 52
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=34.78 E-value=60 Score=23.19 Aligned_cols=40 Identities=10% Similarity=0.079 Sum_probs=25.6
Q ss_pred CceeEeccChHHHHHHHhhCCCceeEEeeecchhhhHHHHHh
Q 043166 132 GRTIFLEEDEAWIEQIRRRFPMLESYHVTYDSKVNQAENLMD 173 (295)
Q Consensus 132 GrTvFLeEd~~~i~~v~~~~p~leay~V~Y~t~~~ea~~LL~ 173 (295)
-+-+.+|+|+.....++...- ..|.|..-....+|-++++
T Consensus 5 ~~ilivdd~~~~~~~l~~~l~--~~~~v~~~~~~~~a~~~l~ 44 (133)
T 3nhm_A 5 PKVLIVENSWTMRETLRLLLS--GEFDCTTAADGASGLQQAL 44 (133)
T ss_dssp CEEEEECSCHHHHHHHHHHHT--TTSEEEEESSHHHHHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHh--CCcEEEEECCHHHHHHHHh
Confidence 456778888887666654433 3466666566666666665
No 53
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=34.56 E-value=1.2e+02 Score=24.07 Aligned_cols=61 Identities=13% Similarity=0.174 Sum_probs=47.0
Q ss_pred cccHHHHHHHHHHHhhcCCccEEeeccCchhhhhhhhccC--CceeEeccChHHHHHHHhhCC
Q 043166 92 QQTLKEISVSARVLEKKAPCNFLVFGLGHDSLMWSTLNYG--GRTIFLEEDEAWIEQIRRRFP 152 (295)
Q Consensus 92 qqt~~Ei~~~~~VL~~raPCNfLVFGLg~dslmW~alN~g--GrTvFLeEd~~~i~~v~~~~p 152 (295)
++...-+..+.+.+....+-++|=+|-|.-.+.......+ .+.+-+|-++..++..+++.+
T Consensus 12 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~ 74 (219)
T 3jwg_A 12 NLNQQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLK 74 (219)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHH
Confidence 4556667778888888889999999887776665555544 588889999999988887653
No 54
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=34.16 E-value=1.3e+02 Score=24.95 Aligned_cols=55 Identities=16% Similarity=0.181 Sum_probs=38.6
Q ss_pred HHHHHhh---cCCccEEeeccCchhhhhhhhc--cCCceeEeccChHHHHHHHhhCCCce
Q 043166 101 SARVLEK---KAPCNFLVFGLGHDSLMWSTLN--YGGRTIFLEEDEAWIEQIRRRFPMLE 155 (295)
Q Consensus 101 ~~~VL~~---raPCNfLVFGLg~dslmW~alN--~gGrTvFLeEd~~~i~~v~~~~p~le 155 (295)
+.+.+.+ ..+-++|.+|-|...+.-.... +|++.+-+|-++..++..+++.++++
T Consensus 74 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~ 133 (269)
T 1p91_A 74 IVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVT 133 (269)
T ss_dssp HHHHHHHHSCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSE
T ss_pred HHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcE
Confidence 3444444 4567899998877554433333 47788889999999999988876543
No 55
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=33.90 E-value=1.3e+02 Score=24.02 Aligned_cols=60 Identities=10% Similarity=0.010 Sum_probs=45.8
Q ss_pred cccHHHHHHHHHHHhhc--CCccEEeeccCchhhhhhhhccCCceeEeccChHHHHHHHhhC
Q 043166 92 QQTLKEISVSARVLEKK--APCNFLVFGLGHDSLMWSTLNYGGRTIFLEEDEAWIEQIRRRF 151 (295)
Q Consensus 92 qqt~~Ei~~~~~VL~~r--aPCNfLVFGLg~dslmW~alN~gGrTvFLeEd~~~i~~v~~~~ 151 (295)
......+..+.+.|... .+-++|-+|-|...+.......|.+.+-+|-++..++..+++.
T Consensus 18 ~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~ 79 (246)
T 1y8c_A 18 VDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKF 79 (246)
T ss_dssp CCHHHHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHH
Confidence 34455667777888775 6789999998887776666666778888999999988877664
No 56
>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A
Probab=33.74 E-value=35 Score=31.32 Aligned_cols=41 Identities=20% Similarity=0.254 Sum_probs=32.8
Q ss_pred HhhcCCccEEeeccCchhhhhhhhccCCceeEeccC-hHHHH
Q 043166 105 LEKKAPCNFLVFGLGHDSLMWSTLNYGGRTIFLEED-EAWIE 145 (295)
Q Consensus 105 L~~raPCNfLVFGLg~dslmW~alN~gGrTvFLeEd-~~~i~ 145 (295)
|++...|.+++.|=|.|+..|.-.|.++++.|.|=| |+-++
T Consensus 93 l~~~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~ 134 (334)
T 1rjd_A 93 LVANEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVE 134 (334)
T ss_dssp HHHCSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHH
T ss_pred HHHCCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHH
Confidence 444567999999999999999999987778888855 66543
No 57
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=33.22 E-value=18 Score=28.57 Aligned_cols=14 Identities=21% Similarity=0.460 Sum_probs=12.0
Q ss_pred cccEEEEeCCCCCC
Q 043166 206 KWDLIMVDAPTGYY 219 (295)
Q Consensus 206 ~WDvImVDgP~Gy~ 219 (295)
+.|+|+||+|.|..
T Consensus 75 ~yD~viiD~~~~~~ 88 (206)
T 4dzz_A 75 DYDFAIVDGAGSLS 88 (206)
T ss_dssp TSSEEEEECCSSSS
T ss_pred CCCEEEEECCCCCC
Confidence 57999999998874
No 58
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=33.08 E-value=1.5e+02 Score=24.04 Aligned_cols=49 Identities=14% Similarity=0.057 Sum_probs=41.4
Q ss_pred cCCccEEeeccCchhhhhhhhccCCceeEeccChHHHHHHHhhCCCcee
Q 043166 108 KAPCNFLVFGLGHDSLMWSTLNYGGRTIFLEEDEAWIEQIRRRFPMLES 156 (295)
Q Consensus 108 raPCNfLVFGLg~dslmW~alN~gGrTvFLeEd~~~i~~v~~~~p~lea 156 (295)
+.+-++|-+|-|.-.........|++.+-+|-++..++.++++.|+++.
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~ 95 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARANAPHADV 95 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHCTTSEE
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhCCCceE
Confidence 4678999999998888888888888999999999999999988665543
No 59
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=32.72 E-value=77 Score=28.11 Aligned_cols=48 Identities=21% Similarity=0.417 Sum_probs=38.3
Q ss_pred HhhcCCccEEeeccCchhhhhhhhcc--CCceeEeccChHHHHHHHhhCC
Q 043166 105 LEKKAPCNFLVFGLGHDSLMWSTLNY--GGRTIFLEEDEAWIEQIRRRFP 152 (295)
Q Consensus 105 L~~raPCNfLVFGLg~dslmW~alN~--gGrTvFLeEd~~~i~~v~~~~p 152 (295)
+....|-++|+.|.|.-.+.-..+.+ +++-+.+|=|+..++..++..+
T Consensus 73 ~~~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~ 122 (314)
T 1uir_A 73 LTHPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMP 122 (314)
T ss_dssp HHSSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCH
T ss_pred hcCCCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhH
Confidence 44467899999999988776666655 5688999999999998887654
No 60
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=32.71 E-value=1.4e+02 Score=26.24 Aligned_cols=48 Identities=23% Similarity=0.308 Sum_probs=38.6
Q ss_pred HhhcCCccEEeeccCchhhhhhhhcc--CCceeEeccChHHHHHHHhhCC
Q 043166 105 LEKKAPCNFLVFGLGHDSLMWSTLNY--GGRTIFLEEDEAWIEQIRRRFP 152 (295)
Q Consensus 105 L~~raPCNfLVFGLg~dslmW~alN~--gGrTvFLeEd~~~i~~v~~~~p 152 (295)
+....|-++|+.|.|...+.-..+.+ +++-+.+|-|+..++.+++..+
T Consensus 86 ~~~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~ 135 (296)
T 1inl_A 86 FLHPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLK 135 (296)
T ss_dssp HHSSSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCH
T ss_pred hcCCCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhH
Confidence 33457889999999988887777766 4688999999999998887654
No 61
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=32.62 E-value=36 Score=28.90 Aligned_cols=76 Identities=14% Similarity=0.129 Sum_probs=51.7
Q ss_pred ChhHHHhhhhhhcCCCCc--cccHHHHHHHHHHHhhcCCccEEeeccC--chhhhhhhhc-cCCceeEeccChHHHHHHH
Q 043166 74 PRSLAQALIHYSTSTITP--QQTLKEISVSARVLEKKAPCNFLVFGLG--HDSLMWSTLN-YGGRTIFLEEDEAWIEQIR 148 (295)
Q Consensus 74 P~~v~~AlvhYatsn~tp--qqt~~Ei~~~~~VL~~raPCNfLVFGLg--~dslmW~alN-~gGrTvFLeEd~~~i~~v~ 148 (295)
...+++.+..|+.....| +.+...-..+..++....|-++|=.|-| ..++.++... .+|+-+-+|-++.+++.++
T Consensus 23 ~~~~l~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~ 102 (242)
T 3r3h_A 23 EHPALAALRKETSTMELANMQVAPEQAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAH 102 (242)
T ss_dssp CCHHHHHHHHTTSSSGGGGTSCCHHHHHHHHHHHHHHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSH
T ss_pred CCHHHHHHHHHHHhCCCCCCccCHHHHHHHHHHHhhcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence 356788888888654332 4556666777777777889999999775 4455555444 4788888998887665444
Q ss_pred h
Q 043166 149 R 149 (295)
Q Consensus 149 ~ 149 (295)
+
T Consensus 103 ~ 103 (242)
T 3r3h_A 103 P 103 (242)
T ss_dssp H
T ss_pred H
Confidence 3
No 62
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=31.82 E-value=1e+02 Score=25.80 Aligned_cols=54 Identities=20% Similarity=0.309 Sum_probs=42.6
Q ss_pred HHHHhhcCCccEEeeccCchhhhhhhhccCCceeEeccChHHHHHHHhhCCCce
Q 043166 102 ARVLEKKAPCNFLVFGLGHDSLMWSTLNYGGRTIFLEEDEAWIEQIRRRFPMLE 155 (295)
Q Consensus 102 ~~VL~~raPCNfLVFGLg~dslmW~alN~gGrTvFLeEd~~~i~~v~~~~p~le 155 (295)
.+.+..+.+-++|-+|-|..........+|++.+-+|-++..++..+++.++++
T Consensus 50 ~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~ 103 (279)
T 3ccf_A 50 LQLLNPQPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNYPHLH 103 (279)
T ss_dssp HHHHCCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTSC
T ss_pred HHHhCCCCCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHhhCCCCE
Confidence 344555677899999998887777766789999999999999998888765443
No 63
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=31.10 E-value=76 Score=22.99 Aligned_cols=42 Identities=7% Similarity=0.231 Sum_probs=25.0
Q ss_pred CCceeEeccChHHHHHHHhhCCCceeEEeeecchhhhHHHHHh
Q 043166 131 GGRTIFLEEDEAWIEQIRRRFPMLESYHVTYDSKVNQAENLMD 173 (295)
Q Consensus 131 gGrTvFLeEd~~~i~~v~~~~p~leay~V~Y~t~~~ea~~LL~ 173 (295)
.-+-+.+|+|+.....++...-. .-|+|..-+...+|-++++
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~-~g~~v~~~~~~~~a~~~l~ 45 (142)
T 2qxy_A 4 TPTVMVVDESRITFLAVKNALEK-DGFNVIWAKNEQEAFTFLR 45 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHGG-GTCEEEEESSHHHHHHHHT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHh-CCCEEEEECCHHHHHHHHh
Confidence 34677888888876655543322 2356665555566666554
No 64
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=30.97 E-value=85 Score=22.49 Aligned_cols=41 Identities=10% Similarity=0.119 Sum_probs=25.1
Q ss_pred CceeEeccChHHHHHHHhhCCCceeEEeeecchhhhHHHHHh
Q 043166 132 GRTIFLEEDEAWIEQIRRRFPMLESYHVTYDSKVNQAENLMD 173 (295)
Q Consensus 132 GrTvFLeEd~~~i~~v~~~~p~leay~V~Y~t~~~ea~~LL~ 173 (295)
-+-+.+|+|+.....++...-.. -|.|..-+...+|-+++.
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~-g~~v~~~~~~~~a~~~l~ 44 (140)
T 2qr3_A 4 GTIIIVDDNKGVLTAVQLLLKNH-FSKVITLSSPVSLSTVLR 44 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTT-SSEEEEECCHHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHhC-CcEEEEeCCHHHHHHHHH
Confidence 35678888887766555443332 456665555666666665
No 65
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=30.38 E-value=88 Score=25.44 Aligned_cols=49 Identities=14% Similarity=0.066 Sum_probs=37.2
Q ss_pred hcCCccEEeeccCchhhhhhhhc--cCCceeEeccChHHHHHHHhhCCCce
Q 043166 107 KKAPCNFLVFGLGHDSLMWSTLN--YGGRTIFLEEDEAWIEQIRRRFPMLE 155 (295)
Q Consensus 107 ~raPCNfLVFGLg~dslmW~alN--~gGrTvFLeEd~~~i~~v~~~~p~le 155 (295)
...+-++|-+|-|...+...... ++++.+-+|-++..++..+++.++++
T Consensus 31 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~ 81 (259)
T 2p35_A 31 LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTN 81 (259)
T ss_dssp CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSE
T ss_pred CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcE
Confidence 35678999998877665544444 48899999999999999888766544
No 66
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=30.36 E-value=22 Score=29.62 Aligned_cols=15 Identities=33% Similarity=0.623 Sum_probs=12.6
Q ss_pred ccccEEEEeCCCCCC
Q 043166 205 IKWDLIMVDAPTGYY 219 (295)
Q Consensus 205 ~~WDvImVDgP~Gy~ 219 (295)
-+.|+|+||+|.|..
T Consensus 109 ~~yD~viiD~~~~~~ 123 (263)
T 1hyq_A 109 ESTDILLLDAPAGLE 123 (263)
T ss_dssp HTCSEEEEECCSSSS
T ss_pred hhCCEEEEeCCCCCC
Confidence 468999999998765
No 67
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=30.31 E-value=1.1e+02 Score=24.71 Aligned_cols=58 Identities=10% Similarity=-0.004 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhhcCCccEEeeccCchhhhhhhhccCCceeEeccChHHHHHHHhhCCC
Q 043166 96 KEISVSARVLEKKAPCNFLVFGLGHDSLMWSTLNYGGRTIFLEEDEAWIEQIRRRFPM 153 (295)
Q Consensus 96 ~Ei~~~~~VL~~raPCNfLVFGLg~dslmW~alN~gGrTvFLeEd~~~i~~v~~~~p~ 153 (295)
.-+..+.+.+..+.+-++|-+|-|...+.......+++-+-+|-++..++..+++...
T Consensus 57 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~ 114 (231)
T 1vbf_A 57 NLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSY 114 (231)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHHhh
Confidence 3344555556556778999998887666655555678888999999999988877554
No 68
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=30.17 E-value=1e+02 Score=22.79 Aligned_cols=42 Identities=19% Similarity=0.245 Sum_probs=25.7
Q ss_pred CceeEeccChHHHHHHHhhCCCceeEEee-ecchhhhHHHHHh
Q 043166 132 GRTIFLEEDEAWIEQIRRRFPMLESYHVT-YDSKVNQAENLMD 173 (295)
Q Consensus 132 GrTvFLeEd~~~i~~v~~~~p~leay~V~-Y~t~~~ea~~LL~ 173 (295)
-+-+.+|+|+.....++...-...-|.|. .-+...+|.++++
T Consensus 6 ~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~ 48 (153)
T 3cz5_A 6 ARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYR 48 (153)
T ss_dssp EEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHH
T ss_pred cEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHh
Confidence 35677888888776666554433446655 3455566666665
No 69
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=29.72 E-value=1.3e+02 Score=24.49 Aligned_cols=58 Identities=16% Similarity=0.197 Sum_probs=44.7
Q ss_pred ccHHHHHHHHHHHhh---cCCccEEeeccCchhhhhhhhccCCceeEeccChHHHHHHHhh
Q 043166 93 QTLKEISVSARVLEK---KAPCNFLVFGLGHDSLMWSTLNYGGRTIFLEEDEAWIEQIRRR 150 (295)
Q Consensus 93 qt~~Ei~~~~~VL~~---raPCNfLVFGLg~dslmW~alN~gGrTvFLeEd~~~i~~v~~~ 150 (295)
...+++..+.++++. +.+-++|=+|-|...........|.+-+-+|-++..++..+++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~ 82 (252)
T 1wzn_A 22 RVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRK 82 (252)
T ss_dssp THHHHHHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHH
Confidence 445677778888876 3467999998888776666666688888999999998877765
No 70
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=29.67 E-value=56 Score=23.68 Aligned_cols=42 Identities=14% Similarity=0.056 Sum_probs=21.4
Q ss_pred cCCceeEeccChHHHHHHHhhCCCceeEEeeecchhhhHHHHH
Q 043166 130 YGGRTIFLEEDEAWIEQIRRRFPMLESYHVTYDSKVNQAENLM 172 (295)
Q Consensus 130 ~gGrTvFLeEd~~~i~~v~~~~p~leay~V~Y~t~~~ea~~LL 172 (295)
++-+-+.+|+|+.....++...-.. .|.|..-+...+|-+++
T Consensus 14 ~~~~ilivdd~~~~~~~l~~~L~~~-g~~v~~~~~~~~al~~l 55 (138)
T 2b4a_A 14 QPFRVTLVEDEPSHATLIQYHLNQL-GAEVTVHPSGSAFFQHR 55 (138)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHT-TCEEEEESSHHHHHHTG
T ss_pred CCCeEEEECCCHHHHHHHHHHHHHc-CCEEEEeCCHHHHHHHH
Confidence 3556677888887665444321111 24554434444444443
No 71
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=29.65 E-value=49 Score=23.88 Aligned_cols=40 Identities=15% Similarity=0.130 Sum_probs=23.7
Q ss_pred ceeEeccChHHHHHHHhhCCCceeEEeeecchhhhHHHHHh
Q 043166 133 RTIFLEEDEAWIEQIRRRFPMLESYHVTYDSKVNQAENLMD 173 (295)
Q Consensus 133 rTvFLeEd~~~i~~v~~~~p~leay~V~Y~t~~~ea~~LL~ 173 (295)
+-+.+|+|+.....++...-. ..|.|..-....+|.++++
T Consensus 9 ~ilivdd~~~~~~~l~~~L~~-~~~~v~~~~~~~~a~~~l~ 48 (137)
T 3hdg_A 9 KILIVEDDTDAREWLSTIISN-HFPEVWSAGDGEEGERLFG 48 (137)
T ss_dssp CEEEECSCHHHHHHHHHHHHT-TCSCEEEESSHHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHh-cCcEEEEECCHHHHHHHHh
Confidence 567788888876655543222 3445555555666666664
No 72
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=29.57 E-value=1.1e+02 Score=22.66 Aligned_cols=42 Identities=14% Similarity=0.380 Sum_probs=27.3
Q ss_pred CCceeEeccChHHHHHHHhhCCCceeEEeeecchhhhHHHHHh
Q 043166 131 GGRTIFLEEDEAWIEQIRRRFPMLESYHVTYDSKVNQAENLMD 173 (295)
Q Consensus 131 gGrTvFLeEd~~~i~~v~~~~p~leay~V~Y~t~~~ea~~LL~ 173 (295)
..+-+.+|+|+.....++...-.. -|.|..-....+|-++++
T Consensus 14 ~~~ILivdd~~~~~~~l~~~L~~~-g~~v~~~~~~~~a~~~l~ 55 (153)
T 3hv2_A 14 RPEILLVDSQEVILQRLQQLLSPL-PYTLHFARDATQALQLLA 55 (153)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTS-SCEEEEESSHHHHHHHHH
T ss_pred CceEEEECCCHHHHHHHHHHhccc-CcEEEEECCHHHHHHHHH
Confidence 456778888888766655443332 367766666777777765
No 73
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=29.32 E-value=1.2e+02 Score=25.66 Aligned_cols=59 Identities=17% Similarity=0.175 Sum_probs=43.9
Q ss_pred cccHHHHHHHHHHHhhcCCccEEeeccCchhhhhh--hh-ccCCceeEeccChHHHHHHHhh
Q 043166 92 QQTLKEISVSARVLEKKAPCNFLVFGLGHDSLMWS--TL-NYGGRTIFLEEDEAWIEQIRRR 150 (295)
Q Consensus 92 qqt~~Ei~~~~~VL~~raPCNfLVFGLg~dslmW~--al-N~gGrTvFLeEd~~~i~~v~~~ 150 (295)
.+..+++..+...+.-+...++|.+|-|.-.+.-. .. +++++-+.+|-++..++.++++
T Consensus 95 ~~~~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~ 156 (277)
T 1o54_A 95 IVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESN 156 (277)
T ss_dssp CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHH
Confidence 45667777777777767788999998877654433 33 4578888999999988877765
No 74
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=29.32 E-value=17 Score=29.74 Aligned_cols=15 Identities=27% Similarity=0.315 Sum_probs=13.0
Q ss_pred cccEEEEeCCCCCCC
Q 043166 206 KWDLIMVDAPTGYYE 220 (295)
Q Consensus 206 ~WDvImVDgP~Gy~~ 220 (295)
+.|+|+||+|.|...
T Consensus 118 ~yD~viiD~p~~~~~ 132 (245)
T 3ea0_A 118 FYDYIIVDFGASIDH 132 (245)
T ss_dssp HCSEEEEEEESSCCT
T ss_pred hCCEEEEeCCCCCch
Confidence 789999999998754
No 75
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=29.10 E-value=55 Score=22.25 Aligned_cols=41 Identities=17% Similarity=0.301 Sum_probs=23.0
Q ss_pred CceeEeccChHHHHHHHhhCCCceeEEeeecchhhhHHHHHh
Q 043166 132 GRTIFLEEDEAWIEQIRRRFPMLESYHVTYDSKVNQAENLMD 173 (295)
Q Consensus 132 GrTvFLeEd~~~i~~v~~~~p~leay~V~Y~t~~~ea~~LL~ 173 (295)
.+-+.+|+|+.....++...-. ..|.|..-+...++-+++.
T Consensus 2 ~~iliv~~~~~~~~~l~~~l~~-~g~~v~~~~~~~~~~~~l~ 42 (119)
T 2j48_A 2 GHILLLEEEDEAATVVCEMLTA-AGFKVIWLVDGSTALDQLD 42 (119)
T ss_dssp CEEEEECCCHHHHHHHHHHHHH-TTCEEEEESCHHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHHHHh-CCcEEEEecCHHHHHHHHH
Confidence 4567888888776555433211 1245555455566655554
No 76
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=28.77 E-value=1.3e+02 Score=25.04 Aligned_cols=59 Identities=20% Similarity=0.164 Sum_probs=43.2
Q ss_pred cccHHHHHHHHHHHhhcCCccEEeeccCchhhhhhh---hccCCceeEeccChHHHHHHHhh
Q 043166 92 QQTLKEISVSARVLEKKAPCNFLVFGLGHDSLMWST---LNYGGRTIFLEEDEAWIEQIRRR 150 (295)
Q Consensus 92 qqt~~Ei~~~~~VL~~raPCNfLVFGLg~dslmW~a---lN~gGrTvFLeEd~~~i~~v~~~ 150 (295)
.+..+++..+...+.-+...++|..|-|.-.+.-.. ++++++-+-+|-++..++.++++
T Consensus 82 ~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~ 143 (280)
T 1i9g_A 82 VIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRN 143 (280)
T ss_dssp CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHH
T ss_pred eecHHHHHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Confidence 345667777777777677889999988766544333 34578888899999988877765
No 77
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=28.70 E-value=22 Score=30.45 Aligned_cols=54 Identities=19% Similarity=0.298 Sum_probs=32.6
Q ss_pred CccccHHHHHHHHHHHhhcCCccEEee-----ccCchhh----hhhhhccCCceeEeccChHH
Q 043166 90 TPQQTLKEISVSARVLEKKAPCNFLVF-----GLGHDSL----MWSTLNYGGRTIFLEEDEAW 143 (295)
Q Consensus 90 tpqqt~~Ei~~~~~VL~~raPCNfLVF-----GLg~dsl----mW~alN~gGrTvFLeEd~~~ 143 (295)
+.+...+.+..+.+.++.+...=.++. |-|.-++ .+..-..|-|++.+|-|+..
T Consensus 15 ~~~~~~~~~~~~~r~~~~~~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q~ 77 (298)
T 2oze_A 15 MEKEELKILEELRRILSNKNEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQA 77 (298)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred hhhhhHHHHHHHHHHhcCCCcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 445566667777777776654433333 4565543 23222456699999988864
No 78
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=28.18 E-value=24 Score=31.66 Aligned_cols=33 Identities=12% Similarity=0.308 Sum_probs=20.0
Q ss_pred CccEEee----ccCchhh----hhhhhccCCceeEeccChH
Q 043166 110 PCNFLVF----GLGHDSL----MWSTLNYGGRTIFLEEDEA 142 (295)
Q Consensus 110 PCNfLVF----GLg~dsl----mW~alN~gGrTvFLeEd~~ 142 (295)
+-.++|| |.|.-+. .++.-..|-||+.+|=|+.
T Consensus 18 ~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~~ 58 (329)
T 2woo_A 18 SLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPA 58 (329)
T ss_dssp TCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCTT
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 3456666 5565532 3333345668999998875
No 79
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=28.18 E-value=26 Score=29.49 Aligned_cols=15 Identities=33% Similarity=0.667 Sum_probs=12.8
Q ss_pred ccccEEEEeCCCCCC
Q 043166 205 IKWDLIMVDAPTGYY 219 (295)
Q Consensus 205 ~~WDvImVDgP~Gy~ 219 (295)
-+.|+|+||+|.|..
T Consensus 110 ~~yD~iiiD~pp~~~ 124 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLS 124 (257)
T ss_dssp TTCSEEEEECCSSCC
T ss_pred cCCCEEEEeCCCCCC
Confidence 468999999999864
No 80
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=28.03 E-value=44 Score=24.33 Aligned_cols=42 Identities=12% Similarity=0.165 Sum_probs=22.0
Q ss_pred CCceeEeccChHHHHHHHhhCCCceeEEeeecchhhhHHHHH
Q 043166 131 GGRTIFLEEDEAWIEQIRRRFPMLESYHVTYDSKVNQAENLM 172 (295)
Q Consensus 131 gGrTvFLeEd~~~i~~v~~~~p~leay~V~Y~t~~~ea~~LL 172 (295)
.-+-+.+|+|+.....++...-...-|.|..-+...+|-+++
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l 45 (140)
T 3lua_A 4 DGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIF 45 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHH
Confidence 346678888888765554332211234555444444544444
No 81
>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}
Probab=27.84 E-value=55 Score=28.81 Aligned_cols=81 Identities=19% Similarity=0.184 Sum_probs=45.9
Q ss_pred hhHHHhhhhhhcCCCCccccHHHHHHHHHH-HhhcCCccEEeeccCc--hhhh-hhhh------ccCC---c--eeEecc
Q 043166 75 RSLAQALIHYSTSTITPQQTLKEISVSARV-LEKKAPCNFLVFGLGH--DSLM-WSTL------NYGG---R--TIFLEE 139 (295)
Q Consensus 75 ~~v~~AlvhYatsn~tpqqt~~Ei~~~~~V-L~~raPCNfLVFGLg~--dslm-W~al------N~gG---r--TvFLeE 139 (295)
..+.+++--|+.-|..|+ +. +..+.+.++|-.|+|- ..+. |.+. |+.+ + -+=+|-
T Consensus 35 ~~l~E~~~vF~~~~~lp~----------r~~~~~~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~ 104 (257)
T 2qy6_A 35 NGLEETRYVFLGGNQLEA----------RFPEHPHPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEK 104 (257)
T ss_dssp THHHHHHHHHHHHTTHHH----------HGGGCSSSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEES
T ss_pred CHHHHHHHHHHhccchHH----------HHHhcCCCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEEC
Confidence 446667666665444332 11 1235677888866654 4444 6555 7754 2 233576
Q ss_pred Ch---HHHHHHHhhCCCceeEEeeecchhhhHHHHHhhc
Q 043166 140 DE---AWIEQIRRRFPMLESYHVTYDSKVNQAENLMDVG 175 (295)
Q Consensus 140 d~---~~i~~v~~~~p~leay~V~Y~t~~~ea~~LL~~~ 175 (295)
+| +-+.++.+..|++. ..|++|++..
T Consensus 105 ~p~~~~~l~~a~~~~p~l~----------~~a~~l~~~w 133 (257)
T 2qy6_A 105 FPLTRADLALAHQHWPELA----------PWAEQLQAQW 133 (257)
T ss_dssp SCCCHHHHHHHHTTCGGGH----------HHHHHHHHTC
T ss_pred CcCCHHHHHHHHhcChhHH----------HHHHHHHHhc
Confidence 66 66666766666653 4577777653
No 82
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=27.79 E-value=1.2e+02 Score=22.20 Aligned_cols=45 Identities=9% Similarity=0.074 Sum_probs=23.8
Q ss_pred ccCCceeEeccChHHHHHHHhhCCCceeEEe-eecchhhhHHHHHh
Q 043166 129 NYGGRTIFLEEDEAWIEQIRRRFPMLESYHV-TYDSKVNQAENLMD 173 (295)
Q Consensus 129 N~gGrTvFLeEd~~~i~~v~~~~p~leay~V-~Y~t~~~ea~~LL~ 173 (295)
+++.+-+.+|+|+.....++...-....|++ ..-....+|-++++
T Consensus 11 ~~~~~vlivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~ 56 (145)
T 3kyj_B 11 GSPYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLA 56 (145)
T ss_dssp CCSEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHH
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHh
Confidence 4455656666677665555443333324553 33455566666654
No 83
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=27.67 E-value=26 Score=28.82 Aligned_cols=14 Identities=29% Similarity=0.752 Sum_probs=12.2
Q ss_pred cccEEEEeCCCCCC
Q 043166 206 KWDLIMVDAPTGYY 219 (295)
Q Consensus 206 ~WDvImVDgP~Gy~ 219 (295)
+.|+|+||+|.|..
T Consensus 113 ~yD~viiD~p~~~~ 126 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE 126 (260)
T ss_dssp TCSEEEEECCSSSS
T ss_pred CCCEEEEcCCCCCC
Confidence 67999999998774
No 84
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=27.57 E-value=23 Score=30.58 Aligned_cols=15 Identities=33% Similarity=0.660 Sum_probs=12.6
Q ss_pred ccccEEEEeCCCCCC
Q 043166 205 IKWDLIMVDAPTGYY 219 (295)
Q Consensus 205 ~~WDvImVDgP~Gy~ 219 (295)
-+.|+|+||+|.|..
T Consensus 102 ~~yD~viiD~p~~~~ 116 (286)
T 2xj4_A 102 AECDFILIDTPGGDS 116 (286)
T ss_dssp HHCSEEEEECCSSCC
T ss_pred hcCCEEEEcCCCCcc
Confidence 468999999999863
No 85
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=27.41 E-value=21 Score=29.56 Aligned_cols=16 Identities=19% Similarity=0.214 Sum_probs=13.0
Q ss_pred cccccEEEEeCCCC-CC
Q 043166 204 DIKWDLIMVDAPTG-YY 219 (295)
Q Consensus 204 e~~WDvImVDgP~G-y~ 219 (295)
.-++|+|+||.|.| ..
T Consensus 65 ~~~yD~viiD~p~~~~~ 81 (209)
T 3cwq_A 65 APKYQNIVIDTQARPED 81 (209)
T ss_dssp GGGCSEEEEEEECCCSS
T ss_pred hhcCCEEEEeCCCCcCc
Confidence 34689999999998 54
No 86
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=27.35 E-value=98 Score=22.86 Aligned_cols=41 Identities=10% Similarity=0.182 Sum_probs=24.6
Q ss_pred ceeEeccChHHHHHHHhhCCCc-eeEEeeecchhhhHHHHHh
Q 043166 133 RTIFLEEDEAWIEQIRRRFPML-ESYHVTYDSKVNQAENLMD 173 (295)
Q Consensus 133 rTvFLeEd~~~i~~v~~~~p~l-eay~V~Y~t~~~ea~~LL~ 173 (295)
+-+.+|+|+.....++...-.. ..|.|..-....+|.++++
T Consensus 22 ~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~ 63 (150)
T 4e7p_A 22 KVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLE 63 (150)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHT
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhh
Confidence 4677888888766555432222 2356666666667766664
No 87
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=26.93 E-value=26 Score=28.37 Aligned_cols=81 Identities=20% Similarity=0.262 Sum_probs=38.3
Q ss_pred ccccEEEEeCCCCCCCC-CCC--c-------hhhhhhhhhhhhccCCCCceEEEecCChhHHH--HH-----------HH
Q 043166 205 IKWDLIMVDAPTGYYEE-APG--R-------MTAIYTAGMMARNREDGDTDVFVHDVNREVED--NF-----------SK 261 (295)
Q Consensus 205 ~~WDvImVDgP~Gy~~e-aPG--R-------M~aIyTAavmAR~r~~g~TdVfVHDVdR~VE~--~~-----------s~ 261 (295)
.+=|+|+||.|....+. -.| . +..+.. .+...+++.|.|=|+++.+.+.+|. .| ++
T Consensus 118 ~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~ 196 (243)
T 1n0w_A 118 SRYALLIVDSATALYRTDYSGRGELSARQMHLARFLR-MLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNII 196 (243)
T ss_dssp SCEEEEEEETSSGGGC-------CHHHHHHHHHHHHH-HHHHHHHHHCCEEEEEC-------------------------
T ss_pred CCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHH-HHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChh
Confidence 45689999999966543 222 2 222221 2222222347788888888888876 34 48
Q ss_pred hhccccccccc--ccceeeeEecCCCC
Q 043166 262 AFLCEGYMKKQ--EGRIRHFNIPSHRD 286 (295)
Q Consensus 262 eFLC~~nlv~~--~GrL~HF~Ip~~~~ 286 (295)
+++|+.-++=. .|..+...|..++.
T Consensus 197 ~~~~d~vi~l~~~~~~~r~l~v~K~r~ 223 (243)
T 1n0w_A 197 AHASTTRLYLRKGRGETRICKIYDSPC 223 (243)
T ss_dssp CCTTCEEEEEEECSTTEEEEEECCBTT
T ss_pred hhcCcEEEEEEEcCCCeEEEEEEECCC
Confidence 88998755433 34456667765543
No 88
>1jy4_A B4dimer; eight-stranded beta-sheet, disulfide bond, de novo protein design; HET: DPR; NMR {Synthetic} SCOP: k.35.1.1 PDB: 1jy6_A*
Probab=26.72 E-value=23 Score=23.58 Aligned_cols=10 Identities=30% Similarity=0.574 Sum_probs=7.7
Q ss_pred ceeeeEecCC
Q 043166 275 RIRHFNIPSH 284 (295)
Q Consensus 275 rL~HF~Ip~~ 284 (295)
.-|||++|+.
T Consensus 20 qkwhfvlpgy 29 (35)
T 1jy4_A 20 QKWHFVLPGY 29 (35)
T ss_dssp EEEEEEETTE
T ss_pred eeeEEecCCc
Confidence 3599999863
No 89
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=26.69 E-value=22 Score=32.39 Aligned_cols=50 Identities=10% Similarity=0.069 Sum_probs=28.1
Q ss_pred ccHHHHHHHHHHHh------hcCCccEEee-----ccCchh----hhhhhh------ccCCceeEeccChH
Q 043166 93 QTLKEISVSARVLE------KKAPCNFLVF-----GLGHDS----LMWSTL------NYGGRTIFLEEDEA 142 (295)
Q Consensus 93 qt~~Ei~~~~~VL~------~raPCNfLVF-----GLg~ds----lmW~al------N~gGrTvFLeEd~~ 142 (295)
.|.+|+..+.+... ...++..++| |-|.-+ |.|..- +.|-|++.+|=|+.
T Consensus 87 ~~~~~v~~~~~~~~~~~~r~~~~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D~~ 157 (403)
T 3ez9_A 87 LTIQNVIDIYAHRKIPKYRDIHKSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQ 157 (403)
T ss_dssp BCHHHHHHHHHHTTCCCHHHHSCSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEEESSS
T ss_pred cCHHHHHHHHHHhccCCcCCCCCCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCC
Confidence 47888887776521 1246776666 445443 223221 56889999998864
No 90
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=26.44 E-value=28 Score=31.60 Aligned_cols=15 Identities=13% Similarity=0.341 Sum_probs=12.2
Q ss_pred cccccEEEEeCCCCC
Q 043166 204 DIKWDLIMVDAPTGY 218 (295)
Q Consensus 204 e~~WDvImVDgP~Gy 218 (295)
.-+||+|+||+|.+.
T Consensus 149 ~~~yD~VIiDtpPt~ 163 (349)
T 3ug7_A 149 SNEFDVVIFDTAPTG 163 (349)
T ss_dssp CCSCSEEEECSCCCT
T ss_pred hCCCCEEEECCCCCh
Confidence 458999999988754
No 91
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=26.40 E-value=1.2e+02 Score=24.27 Aligned_cols=58 Identities=16% Similarity=0.121 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhhcCCccEEeeccCchhhhhhhhccCC-ceeEeccChHHHHHHHhhCCC
Q 043166 96 KEISVSARVLEKKAPCNFLVFGLGHDSLMWSTLNYGG-RTIFLEEDEAWIEQIRRRFPM 153 (295)
Q Consensus 96 ~Ei~~~~~VL~~raPCNfLVFGLg~dslmW~alN~gG-rTvFLeEd~~~i~~v~~~~p~ 153 (295)
.+...+...+....+-++|-+|-|...........|. +.+-+|-++..++..+++.+.
T Consensus 30 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~ 88 (243)
T 3bkw_A 30 AEWPALRAMLPEVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD 88 (243)
T ss_dssp TTHHHHHHHSCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS
T ss_pred HhHHHHHHhccccCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc
Confidence 4455677777777788999998887766655555565 788899999999988887653
No 92
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=26.26 E-value=80 Score=22.38 Aligned_cols=40 Identities=20% Similarity=0.327 Sum_probs=23.2
Q ss_pred ceeEeccChHHHHHHHhhCCCceeEEeeecchhhhHHHHHh
Q 043166 133 RTIFLEEDEAWIEQIRRRFPMLESYHVTYDSKVNQAENLMD 173 (295)
Q Consensus 133 rTvFLeEd~~~i~~v~~~~p~leay~V~Y~t~~~ea~~LL~ 173 (295)
+-+.+|+|+.....++...-.. -|.|..-+...+|-++++
T Consensus 5 ~ilivdd~~~~~~~l~~~L~~~-g~~v~~~~~~~~a~~~l~ 44 (127)
T 3i42_A 5 QALIVEDYQAAAETFKELLEML-GFQADYVMSGTDALHAMS 44 (127)
T ss_dssp EEEEECSCHHHHHHHHHHHHHT-TEEEEEESSHHHHHHHHH
T ss_pred eEEEEcCCHHHHHHHHHHHHHc-CCCEEEECCHHHHHHHHH
Confidence 4567888887655444322111 356666566666666665
No 93
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=26.25 E-value=1.3e+02 Score=24.52 Aligned_cols=59 Identities=24% Similarity=0.227 Sum_probs=40.5
Q ss_pred cccHHHHHH-HHHHHhhcCCccEEeeccCchhhhhhhhccCCceeEeccChHHHHHHHhh
Q 043166 92 QQTLKEISV-SARVLEKKAPCNFLVFGLGHDSLMWSTLNYGGRTIFLEEDEAWIEQIRRR 150 (295)
Q Consensus 92 qqt~~Ei~~-~~~VL~~raPCNfLVFGLg~dslmW~alN~gGrTvFLeEd~~~i~~v~~~ 150 (295)
.++..|+.. +...+.-+..-.+|-+|-|.-.+.-.....+++.+-+|-++..++..+++
T Consensus 37 ~~~~~~~~~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~ 96 (204)
T 3njr_A 37 QITKSPMRALTLAALAPRRGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKN 96 (204)
T ss_dssp CCCCHHHHHHHHHHHCCCTTCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHH
Confidence 566666653 44455545667899998876655433333388888899999998887765
No 94
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=26.22 E-value=21 Score=32.71 Aligned_cols=32 Identities=13% Similarity=0.288 Sum_probs=20.0
Q ss_pred ccEEee----ccCchhh----hhhhh--ccCCceeEeccChH
Q 043166 111 CNFLVF----GLGHDSL----MWSTL--NYGGRTIFLEEDEA 142 (295)
Q Consensus 111 CNfLVF----GLg~dsl----mW~al--N~gGrTvFLeEd~~ 142 (295)
--++|+ |.|.-+. .++.- ..|-||+.++-|+.
T Consensus 18 ~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~~ 59 (354)
T 2woj_A 18 HKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPA 59 (354)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence 356666 5565542 33333 56779999998874
No 95
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=26.20 E-value=25 Score=29.57 Aligned_cols=15 Identities=27% Similarity=0.492 Sum_probs=12.4
Q ss_pred ccccEEEEeCCCCCC
Q 043166 205 IKWDLIMVDAPTGYY 219 (295)
Q Consensus 205 ~~WDvImVDgP~Gy~ 219 (295)
-+.|+|+||+|.|..
T Consensus 143 ~~yD~viiD~pp~~~ 157 (267)
T 3k9g_A 143 YKYDYIVIDTNPSLD 157 (267)
T ss_dssp TTCSEEEEEECSSCS
T ss_pred cCCCEEEEECcCCcc
Confidence 458999999998763
No 96
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=26.07 E-value=75 Score=22.65 Aligned_cols=41 Identities=15% Similarity=0.288 Sum_probs=21.6
Q ss_pred CCceeEeccChHHHHHHHhhCCCceeEEeeecchhhhHHHHH
Q 043166 131 GGRTIFLEEDEAWIEQIRRRFPMLESYHVTYDSKVNQAENLM 172 (295)
Q Consensus 131 gGrTvFLeEd~~~i~~v~~~~p~leay~V~Y~t~~~ea~~LL 172 (295)
+.+-+.+|+|+.....++...-.. .|.|..-+...+|-+++
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~-g~~v~~~~~~~~a~~~l 47 (130)
T 3eod_A 7 GKQILIVEDEQVFRSLLDSWFSSL-GATTVLAADGVDALELL 47 (130)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHT-TCEEEEESCHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhC-CceEEEeCCHHHHHHHH
Confidence 346677888887655544321111 24554444455555555
No 97
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=25.82 E-value=71 Score=22.82 Aligned_cols=40 Identities=13% Similarity=0.132 Sum_probs=22.2
Q ss_pred ceeEeccChHHHHHHHhhCCCceeEEee-ecchhhhHHHHHh
Q 043166 133 RTIFLEEDEAWIEQIRRRFPMLESYHVT-YDSKVNQAENLMD 173 (295)
Q Consensus 133 rTvFLeEd~~~i~~v~~~~p~leay~V~-Y~t~~~ea~~LL~ 173 (295)
+-+.+|+|+.....++...-... |.|. .-+...+|-++++
T Consensus 3 ~ilivdd~~~~~~~l~~~L~~~g-~~v~~~~~~~~~a~~~~~ 43 (134)
T 3f6c_A 3 NAIIIDDHPLAIAAIRNLLIKND-IEILAELTEGGSAVQRVE 43 (134)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTT-EEEEEEESSSTTHHHHHH
T ss_pred EEEEEcCCHHHHHHHHHHHhhCC-cEEEEEcCCHHHHHHHHH
Confidence 35678888877655543322222 5654 3445566666654
No 98
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=25.09 E-value=1.2e+02 Score=23.07 Aligned_cols=38 Identities=18% Similarity=0.322 Sum_probs=28.0
Q ss_pred cEEeeccCchh-hhhhhhc-cCCceeEeccChHHHHHHHh
Q 043166 112 NFLVFGLGHDS-LMWSTLN-YGGRTIFLEEDEAWIEQIRR 149 (295)
Q Consensus 112 NfLVFGLg~ds-lmW~alN-~gGrTvFLeEd~~~i~~v~~ 149 (295)
+++|+|+|.=. .+-..|. .|-..+-+|.|++.++.+++
T Consensus 9 ~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~ 48 (140)
T 3fwz_A 9 HALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRE 48 (140)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH
Confidence 68999999843 3333444 46678888999999988876
No 99
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=24.93 E-value=25 Score=31.86 Aligned_cols=50 Identities=10% Similarity=0.098 Sum_probs=33.0
Q ss_pred ccHHHHHHHHHHHh------hcCCccEEee-----ccCchh----hhhhhh------ccCCceeEeccChH
Q 043166 93 QTLKEISVSARVLE------KKAPCNFLVF-----GLGHDS----LMWSTL------NYGGRTIFLEEDEA 142 (295)
Q Consensus 93 qt~~Ei~~~~~VL~------~raPCNfLVF-----GLg~ds----lmW~al------N~gGrTvFLeEd~~ 142 (295)
+|.+++..+.+.+. ...++..++| |-|.-+ |.|..- +.|-|++.+|=|+.
T Consensus 84 ~~~~~i~~~~~~~~~~~~~~~~~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~q 154 (398)
T 3ez2_A 84 MSIQNIIDIYEHRGVPKYRDRYSEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQ 154 (398)
T ss_dssp BCHHHHHHHHHHTTCCCGGGTCCSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTT
T ss_pred CCHHHHHHHHHHhcccccCcCCCCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCC
Confidence 48999988887762 2345777766 455544 233222 46889999998874
No 100
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=24.87 E-value=1.1e+02 Score=22.19 Aligned_cols=39 Identities=5% Similarity=0.185 Sum_probs=22.5
Q ss_pred ceeEeccChHHHHHHHhhCCCceeEEeeecchhhhHHHHHh
Q 043166 133 RTIFLEEDEAWIEQIRRRFPMLESYHVTYDSKVNQAENLMD 173 (295)
Q Consensus 133 rTvFLeEd~~~i~~v~~~~p~leay~V~Y~t~~~ea~~LL~ 173 (295)
+-+.+|+|+.....++...-.. |.|..-+...+|-+++.
T Consensus 3 ~Ilivdd~~~~~~~l~~~l~~~--~~v~~~~~~~~a~~~~~ 41 (139)
T 2jk1_A 3 AILLVDDEPHSLAAMKLALEDD--FDVLTAQGAEAAIAILE 41 (139)
T ss_dssp EEEEECSSHHHHHHHHHHHTTT--SCEEEESSHHHHHHHHH
T ss_pred eEEEEcCCHHHHHHHHHHhhcC--ceEEEcCCHHHHHHHHh
Confidence 4567888887766555443322 66655455555655554
No 101
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=24.68 E-value=1e+02 Score=23.42 Aligned_cols=41 Identities=7% Similarity=0.013 Sum_probs=22.4
Q ss_pred ceeEeccChHHHHHHHhhCCCc-eeEEeeecchhhhHHHHHh
Q 043166 133 RTIFLEEDEAWIEQIRRRFPML-ESYHVTYDSKVNQAENLMD 173 (295)
Q Consensus 133 rTvFLeEd~~~i~~v~~~~p~l-eay~V~Y~t~~~ea~~LL~ 173 (295)
+-+.+|+|+.....++...-.. ..+.|..-....+|-++++
T Consensus 27 ~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~ 68 (164)
T 3t8y_A 27 RVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAI 68 (164)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHH
T ss_pred EEEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHhc
Confidence 5677888888766555432222 1233434455566665554
No 102
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=24.39 E-value=27 Score=32.20 Aligned_cols=34 Identities=12% Similarity=0.297 Sum_probs=20.7
Q ss_pred CCccEEee----ccCchh----hhhhhh--ccCCceeEeccChH
Q 043166 109 APCNFLVF----GLGHDS----LMWSTL--NYGGRTIFLEEDEA 142 (295)
Q Consensus 109 aPCNfLVF----GLg~ds----lmW~al--N~gGrTvFLeEd~~ 142 (295)
.+-.++|| |-|.-+ +.|..- ..|-|++.++-|+.
T Consensus 16 ~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~~ 59 (348)
T 3io3_A 16 DSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPA 59 (348)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence 34467777 344433 333333 67889999998864
No 103
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=24.37 E-value=26 Score=32.39 Aligned_cols=63 Identities=14% Similarity=0.214 Sum_probs=30.5
Q ss_pred ccccEEEEeCCCCCCC--CCCCchhhh-----------hhhhhhhhccCCCCceEEEecCChhHHHHH----------HH
Q 043166 205 IKWDLIMVDAPTGYYE--EAPGRMTAI-----------YTAGMMARNREDGDTDVFVHDVNREVEDNF----------SK 261 (295)
Q Consensus 205 ~~WDvImVDgP~Gy~~--eaPGRM~aI-----------yTAavmAR~r~~g~TdVfVHDVdR~VE~~~----------s~ 261 (295)
..-|+|+||.+....+ +-.|+|+.. +.-.+..-.++-|.|=|++..+.+.++..| +.
T Consensus 140 ~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~~~~~fg~~~~~~gG~~l 219 (356)
T 1u94_A 140 GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNAL 219 (356)
T ss_dssp TCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC--------------CTTCSHH
T ss_pred cCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCCcce
Confidence 4579999999998875 223444311 111111112234788899999999999876 45
Q ss_pred hhcccc
Q 043166 262 AFLCEG 267 (295)
Q Consensus 262 eFLC~~ 267 (295)
+|.++-
T Consensus 220 ~~~adv 225 (356)
T 1u94_A 220 KFYASV 225 (356)
T ss_dssp HHHCSE
T ss_pred eeeccE
Confidence 666654
No 104
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=24.27 E-value=79 Score=23.37 Aligned_cols=45 Identities=16% Similarity=0.130 Sum_probs=24.4
Q ss_pred ccCCceeEeccChHHHHHHHhhCCCceeEE-eeecchhhhHHHHHh
Q 043166 129 NYGGRTIFLEEDEAWIEQIRRRFPMLESYH-VTYDSKVNQAENLMD 173 (295)
Q Consensus 129 N~gGrTvFLeEd~~~i~~v~~~~p~leay~-V~Y~t~~~ea~~LL~ 173 (295)
+.+.+-+.+|+|+.....++...-....+. |..-....+|-++++
T Consensus 13 ~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~ 58 (152)
T 3eul_A 13 PEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIK 58 (152)
T ss_dssp -CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHH
T ss_pred CceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHH
Confidence 345677888888877665553322222222 434455566666665
No 105
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=24.25 E-value=95 Score=22.38 Aligned_cols=42 Identities=12% Similarity=0.262 Sum_probs=24.9
Q ss_pred CCceeEeccChHHHHHHHhhCCCceeEEeeecchhhhHHHHHh
Q 043166 131 GGRTIFLEEDEAWIEQIRRRFPMLESYHVTYDSKVNQAENLMD 173 (295)
Q Consensus 131 gGrTvFLeEd~~~i~~v~~~~p~leay~V~Y~t~~~ea~~LL~ 173 (295)
.-+-+.+|+|+.....++...-.. -|.|..-+...+|-++++
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~-g~~v~~~~~~~~a~~~l~ 48 (142)
T 3cg4_A 7 KGDVMIVDDDAHVRIAVKTILSDA-GFHIISADSGGQCIDLLK 48 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHT-TCEEEEESSHHHHHHHHH
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHC-CeEEEEeCCHHHHHHHHH
Confidence 456678888887655444322111 356665566677777665
No 106
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=24.21 E-value=38 Score=31.04 Aligned_cols=64 Identities=19% Similarity=0.359 Sum_probs=33.3
Q ss_pred cccEEEEeCCCCCCC--CCCCchhhh--------hh---hhhhhhccCCCCceEEEecCChhHHHHH----------HHh
Q 043166 206 KWDLIMVDAPTGYYE--EAPGRMTAI--------YT---AGMMARNREDGDTDVFVHDVNREVEDNF----------SKA 262 (295)
Q Consensus 206 ~WDvImVDgP~Gy~~--eaPGRM~aI--------yT---AavmAR~r~~g~TdVfVHDVdR~VE~~~----------s~e 262 (295)
.=|+|+||.+....+ +-.|+|+-. .+ -.+....++.|.|=||+..+.+.++..| +.+
T Consensus 139 ~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~ 218 (349)
T 2zr9_A 139 ALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALK 218 (349)
T ss_dssp CCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHH
T ss_pred CCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhh
Confidence 458999999998875 323444321 11 1111112334778899999999888766 468
Q ss_pred hcccccc
Q 043166 263 FLCEGYM 269 (295)
Q Consensus 263 FLC~~nl 269 (295)
|.|+--+
T Consensus 219 ~~ad~~l 225 (349)
T 2zr9_A 219 FYASVRL 225 (349)
T ss_dssp HHCSEEE
T ss_pred hccceEE
Confidence 8887533
No 107
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=23.90 E-value=1.6e+02 Score=23.01 Aligned_cols=49 Identities=8% Similarity=0.070 Sum_probs=35.5
Q ss_pred HHHhhcCCccEEeeccCchhhhhhhhccCCceeEeccChHHHHHHHhhC
Q 043166 103 RVLEKKAPCNFLVFGLGHDSLMWSTLNYGGRTIFLEEDEAWIEQIRRRF 151 (295)
Q Consensus 103 ~VL~~raPCNfLVFGLg~dslmW~alN~gGrTvFLeEd~~~i~~v~~~~ 151 (295)
+.+....|-++|-+|-|...........|.+.+-+|-++..++.++++.
T Consensus 23 ~~~~~~~~~~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~ 71 (202)
T 2kw5_A 23 SVANQIPQGKILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLA 71 (202)
T ss_dssp HHHHHSCSSEEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHH
T ss_pred HHHHhCCCCCEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHH
Confidence 3344434449999988877666665666778888999999888877664
No 108
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=23.53 E-value=2.1e+02 Score=22.37 Aligned_cols=53 Identities=13% Similarity=0.120 Sum_probs=41.1
Q ss_pred HHHHHHHHHhh-cCCccEEeeccCchhhhhhhhccCCceeEeccChHHHHHHHh
Q 043166 97 EISVSARVLEK-KAPCNFLVFGLGHDSLMWSTLNYGGRTIFLEEDEAWIEQIRR 149 (295)
Q Consensus 97 Ei~~~~~VL~~-raPCNfLVFGLg~dslmW~alN~gGrTvFLeEd~~~i~~v~~ 149 (295)
.+..+.+.|.+ ...-++|-+|-|...+.-.....|.+-+-+|-++..++..++
T Consensus 33 ~~~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~ 86 (218)
T 3ou2_A 33 AAPAALERLRAGNIRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGR 86 (218)
T ss_dssp THHHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHHSSEEEEEESCHHHHHHHGG
T ss_pred HHHHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHh
Confidence 35666677765 445799999988877776666668888899999999988887
No 109
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=23.24 E-value=1.6e+02 Score=22.61 Aligned_cols=50 Identities=14% Similarity=0.099 Sum_probs=36.7
Q ss_pred HHHHHhhcCCccEEeeccCchhhhhhhhccCCceeEeccChHHHHHHHhh
Q 043166 101 SARVLEKKAPCNFLVFGLGHDSLMWSTLNYGGRTIFLEEDEAWIEQIRRR 150 (295)
Q Consensus 101 ~~~VL~~raPCNfLVFGLg~dslmW~alN~gGrTvFLeEd~~~i~~v~~~ 150 (295)
+.+.+....+-++|-+|-|...........|.+.+-+|-++..++..+++
T Consensus 24 l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~ 73 (199)
T 2xvm_A 24 VLEAVKVVKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERI 73 (199)
T ss_dssp HHHHTTTSCSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred HHHHhhccCCCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHH
Confidence 34555666788999998877665555555577888889899888877654
No 110
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=22.87 E-value=79 Score=29.30 Aligned_cols=54 Identities=19% Similarity=0.307 Sum_probs=25.2
Q ss_pred cccEEEEeCCCCCCC--CCCCchhh-----------hhhhhhhhhccCCCCceEEEecCChhHHHHH
Q 043166 206 KWDLIMVDAPTGYYE--EAPGRMTA-----------IYTAGMMARNREDGDTDVFVHDVNREVEDNF 259 (295)
Q Consensus 206 ~WDvImVDgP~Gy~~--eaPGRM~a-----------IyTAavmAR~r~~g~TdVfVHDVdR~VE~~~ 259 (295)
.=|+|+||....+.+ +-.|+|+. -+.-.+..-+++.+.+=|++..+.|.++..|
T Consensus 152 ~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~~~~~~~~f 218 (366)
T 1xp8_A 152 AIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVREKIGVMY 218 (366)
T ss_dssp CCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC--------
T ss_pred CCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEecccccCccc
Confidence 348999999998875 33455431 1111111112345778899999999998766
No 111
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=22.64 E-value=90 Score=22.53 Aligned_cols=42 Identities=12% Similarity=0.106 Sum_probs=24.5
Q ss_pred CCceeEeccChHHHHHHHhhCCCceeEEeeecchhhhHHHHHh
Q 043166 131 GGRTIFLEEDEAWIEQIRRRFPMLESYHVTYDSKVNQAENLMD 173 (295)
Q Consensus 131 gGrTvFLeEd~~~i~~v~~~~p~leay~V~Y~t~~~ea~~LL~ 173 (295)
.-+-+.+|+|+.....++...-. ..|.|..-....+|-++++
T Consensus 6 ~~~iLivdd~~~~~~~l~~~l~~-~g~~v~~~~~~~~a~~~l~ 47 (140)
T 3grc_A 6 RPRILICEDDPDIARLLNLMLEK-GGFDSDMVHSAAQALEQVA 47 (140)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHH-TTCEEEEECSHHHHHHHHH
T ss_pred CCCEEEEcCCHHHHHHHHHHHHH-CCCeEEEECCHHHHHHHHH
Confidence 44667888888876555432211 1255655556666766665
No 112
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=22.57 E-value=1.4e+02 Score=21.84 Aligned_cols=40 Identities=13% Similarity=0.213 Sum_probs=24.8
Q ss_pred ceeEeccChHHHHHHHhhCCCceeEEeeecchhhhHHHHHh
Q 043166 133 RTIFLEEDEAWIEQIRRRFPMLESYHVTYDSKVNQAENLMD 173 (295)
Q Consensus 133 rTvFLeEd~~~i~~v~~~~p~leay~V~Y~t~~~ea~~LL~ 173 (295)
+-+.+|+|+.....++...-. ..|.|..-+...+|-+++.
T Consensus 6 ~ILivdd~~~~~~~l~~~L~~-~g~~v~~~~~~~~a~~~l~ 45 (137)
T 3cfy_A 6 RVLLVEDSTSLAILYKQYVKD-EPYDIFHVETGRDAIQFIE 45 (137)
T ss_dssp EEEEECSCTTHHHHHHHHTTT-SSSEEEEESSHHHHHHHHH
T ss_pred eEEEEeCCHHHHHHHHHHHHh-cCceEEEeCCHHHHHHHHH
Confidence 567888888877666655433 2456654455566666554
No 113
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=22.07 E-value=1.4e+02 Score=23.63 Aligned_cols=54 Identities=19% Similarity=0.179 Sum_probs=36.7
Q ss_pred HHHHHHHHHhhcCCccEEeeccCchhhhhhhhccC---CceeEeccChHHHHHHHhh
Q 043166 97 EISVSARVLEKKAPCNFLVFGLGHDSLMWSTLNYG---GRTIFLEEDEAWIEQIRRR 150 (295)
Q Consensus 97 Ei~~~~~VL~~raPCNfLVFGLg~dslmW~alN~g---GrTvFLeEd~~~i~~v~~~ 150 (295)
-+..+.+.+..+.+-++|.+|-|.-.........+ ++-+-+|-++..++..+++
T Consensus 65 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~ 121 (215)
T 2yxe_A 65 MVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERT 121 (215)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Confidence 34445555555667799999887665544444433 7788888899888877765
No 114
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=21.98 E-value=80 Score=22.95 Aligned_cols=31 Identities=3% Similarity=0.028 Sum_probs=17.2
Q ss_pred cCCceeEeccChHHHHHHHhhCCCceeEEeee
Q 043166 130 YGGRTIFLEEDEAWIEQIRRRFPMLESYHVTY 161 (295)
Q Consensus 130 ~gGrTvFLeEd~~~i~~v~~~~p~leay~V~Y 161 (295)
..-+-+.+|+|+.....++...-.. -|+|..
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~-g~~v~~ 35 (136)
T 3kto_A 5 HHPIIYLVDHQKDARAALSKLLSPL-DVTIQC 35 (136)
T ss_dssp --CEEEEECSCHHHHHHHHHHHTTS-SSEEEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHC-CcEEEE
Confidence 3456778888888766555433221 355543
No 115
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=21.96 E-value=1.6e+02 Score=23.64 Aligned_cols=59 Identities=17% Similarity=0.108 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhh-cCCccEEeeccCchhhhhh--hhccCCceeEeccChHHHHHHHhhCCCc
Q 043166 96 KEISVSARVLEK-KAPCNFLVFGLGHDSLMWS--TLNYGGRTIFLEEDEAWIEQIRRRFPML 154 (295)
Q Consensus 96 ~Ei~~~~~VL~~-raPCNfLVFGLg~dslmW~--alN~gGrTvFLeEd~~~i~~v~~~~p~l 154 (295)
..+..+.+.+.. ..+-++|=+|-|....... ...++++.+-+|-++..++..+++.+..
T Consensus 30 ~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~ 91 (234)
T 3dtn_A 30 DFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGN 91 (234)
T ss_dssp HHHHHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccC
Confidence 334566666663 5678999998776655544 4444788889999999999888876543
No 116
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=21.76 E-value=35 Score=31.21 Aligned_cols=13 Identities=15% Similarity=0.521 Sum_probs=10.9
Q ss_pred cccccEEEEeCCC
Q 043166 204 DIKWDLIMVDAPT 216 (295)
Q Consensus 204 e~~WDvImVDgP~ 216 (295)
+-+||+|+||.|.
T Consensus 136 ~~~yD~VIiDtpP 148 (334)
T 3iqw_A 136 SLSYETIVFDTAP 148 (334)
T ss_dssp TSSCSEEEEECCC
T ss_pred hCCCCEEEEeCCC
Confidence 3689999999775
No 117
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=21.50 E-value=66 Score=23.10 Aligned_cols=44 Identities=14% Similarity=0.243 Sum_probs=23.0
Q ss_pred cCCceeEeccChHHHHHHHhhCCCceeEE-eeecchhhhHHHHHh
Q 043166 130 YGGRTIFLEEDEAWIEQIRRRFPMLESYH-VTYDSKVNQAENLMD 173 (295)
Q Consensus 130 ~gGrTvFLeEd~~~i~~v~~~~p~leay~-V~Y~t~~~ea~~LL~ 173 (295)
.+-+-+.+|+|+.....++...-...-|. |..-....+|-++++
T Consensus 7 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~ 51 (143)
T 3cnb_A 7 NDFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLH 51 (143)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHH
T ss_pred CCceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHH
Confidence 34567788888877655543321112234 444455566666554
No 118
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=21.49 E-value=36 Score=30.30 Aligned_cols=12 Identities=17% Similarity=0.567 Sum_probs=10.7
Q ss_pred ccccEEEEeCCC
Q 043166 205 IKWDLIMVDAPT 216 (295)
Q Consensus 205 ~~WDvImVDgP~ 216 (295)
-+||+|+||+|.
T Consensus 137 ~~yD~VIiDtpP 148 (324)
T 3zq6_A 137 DEYDIVIFDTAP 148 (324)
T ss_dssp CCCSEEEEECCC
T ss_pred CCCCEEEECCCC
Confidence 479999999887
No 119
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=21.32 E-value=48 Score=28.52 Aligned_cols=35 Identities=23% Similarity=0.208 Sum_probs=28.2
Q ss_pred hhhhhccCCceeEe------ccChHHHHHHHhhCCCceeEE
Q 043166 124 MWSTLNYGGRTIFL------EEDEAWIEQIRRRFPMLESYH 158 (295)
Q Consensus 124 mW~alN~gGrTvFL------eEd~~~i~~v~~~~p~leay~ 158 (295)
+|..|++||+-||- +|+++-|+.+.+++|+.+.-.
T Consensus 197 ~~~~LkpgG~lv~stcs~~~~ene~~v~~~l~~~~~~~~~~ 237 (274)
T 3ajd_A 197 GIDLLKKDGELVYSTCSMEVEENEEVIKYILQKRNDVELII 237 (274)
T ss_dssp HHHHEEEEEEEEEEESCCCTTSSHHHHHHHHHHCSSEEEEC
T ss_pred HHHhCCCCCEEEEEECCCChHHhHHHHHHHHHhCCCcEEec
Confidence 36678999998874 489999999999999877543
No 120
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=21.24 E-value=36 Score=31.92 Aligned_cols=12 Identities=33% Similarity=0.415 Sum_probs=9.9
Q ss_pred ccccEEEEeCCC
Q 043166 205 IKWDLIMVDAPT 216 (295)
Q Consensus 205 ~~WDvImVDgP~ 216 (295)
-+||+|+||+|.
T Consensus 123 ~~yD~VIvDtpP 134 (374)
T 3igf_A 123 GKYDTIVYDGTG 134 (374)
T ss_dssp TCCSEEEEECCC
T ss_pred cCCCEEEEeCCC
Confidence 479999999764
No 121
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=21.12 E-value=2e+02 Score=22.73 Aligned_cols=55 Identities=18% Similarity=0.118 Sum_probs=38.1
Q ss_pred HHHHHHHHHhhcCCccEEeeccCchhhhhhhhccCCceeEeccChHHHHHHHhhC
Q 043166 97 EISVSARVLEKKAPCNFLVFGLGHDSLMWSTLNYGGRTIFLEEDEAWIEQIRRRF 151 (295)
Q Consensus 97 Ei~~~~~VL~~raPCNfLVFGLg~dslmW~alN~gGrTvFLeEd~~~i~~v~~~~ 151 (295)
-+..+...+..+.+-++|-+|-|.-...-.....+++-+-+|-++..++..+++.
T Consensus 65 ~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~~ 119 (210)
T 3lbf_A 65 MVARMTELLELTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRL 119 (210)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHHH
Confidence 3444555555577889999988765544333334788888999999888777653
No 122
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=21.04 E-value=35 Score=30.20 Aligned_cols=14 Identities=36% Similarity=0.669 Sum_probs=12.0
Q ss_pred ccccEEEEeCCCCC
Q 043166 205 IKWDLIMVDAPTGY 218 (295)
Q Consensus 205 ~~WDvImVDgP~Gy 218 (295)
-++|+|+||+|.+.
T Consensus 212 ~~yD~VIIDtpp~~ 225 (299)
T 3cio_A 212 DHYDLVIVDTPPML 225 (299)
T ss_dssp HHCSEEEEECCCTT
T ss_pred hCCCEEEEcCCCCc
Confidence 46899999999865
No 123
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=20.58 E-value=72 Score=23.07 Aligned_cols=40 Identities=13% Similarity=0.233 Sum_probs=20.7
Q ss_pred CCceeEeccChHHHHHHHhhCCCceeEEeeecchhhhHHH
Q 043166 131 GGRTIFLEEDEAWIEQIRRRFPMLESYHVTYDSKVNQAEN 170 (295)
Q Consensus 131 gGrTvFLeEd~~~i~~v~~~~p~leay~V~Y~t~~~ea~~ 170 (295)
.-+-+.+|+|+.....++...-....|.|..-....+|-+
T Consensus 14 ~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~ 53 (135)
T 3snk_A 14 RKQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKG 53 (135)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGC
T ss_pred CcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHH
Confidence 3466778888877655543322111166654444444433
No 124
>4a1x_C CP5-46-A peptide; hydrolase-peptide complex, unmodified inhibitory peptides; 1.90A {Synthetic construct} PDB: 4a1t_C
Probab=20.53 E-value=47 Score=20.83 Aligned_cols=11 Identities=36% Similarity=0.896 Sum_probs=7.9
Q ss_pred EEEEeCCCCCCC
Q 043166 209 LIMVDAPTGYYE 220 (295)
Q Consensus 209 vImVDgP~Gy~~ 220 (295)
|-+.||| ||.|
T Consensus 7 vylldgp-gydp 17 (26)
T 4a1x_C 7 VYLLDGP-GYDP 17 (26)
T ss_pred EEEecCC-CCCc
Confidence 4578888 6766
No 125
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=20.34 E-value=97 Score=22.14 Aligned_cols=41 Identities=12% Similarity=0.265 Sum_probs=21.7
Q ss_pred CceeEeccChHHHHHHHhhCCCceeEEeeecchhhhHHHHHh
Q 043166 132 GRTIFLEEDEAWIEQIRRRFPMLESYHVTYDSKVNQAENLMD 173 (295)
Q Consensus 132 GrTvFLeEd~~~i~~v~~~~p~leay~V~Y~t~~~ea~~LL~ 173 (295)
.+-+.+|+|+.....++...-. ..|.|..-....+|-+++.
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~-~g~~v~~~~~~~~a~~~~~ 44 (136)
T 1mvo_A 4 KKILVVDDEESIVTLLQYNLER-SGYDVITASDGEEALKKAE 44 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHH-TTCEEEEESSHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHH-CCcEEEEecCHHHHHHHHh
Confidence 4567788888765544432111 1355554444555555554
No 126
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=20.05 E-value=3.2e+02 Score=21.48 Aligned_cols=57 Identities=16% Similarity=0.083 Sum_probs=44.6
Q ss_pred HHHHHHHHHhh-cCCccEEeeccCchhhhhhhhccCCceeEeccChHHHHHHHhhCCC
Q 043166 97 EISVSARVLEK-KAPCNFLVFGLGHDSLMWSTLNYGGRTIFLEEDEAWIEQIRRRFPM 153 (295)
Q Consensus 97 Ei~~~~~VL~~-raPCNfLVFGLg~dslmW~alN~gGrTvFLeEd~~~i~~v~~~~p~ 153 (295)
....+.+.|.+ ..+.++|=+|=|...+.-.....|.+.+-+|-++..++..+++.+.
T Consensus 29 ~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~ 86 (250)
T 2p7i_A 29 MHPFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKD 86 (250)
T ss_dssp HHHHHHHHHGGGCCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHhhcCCCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhhhC
Confidence 34556666665 5678999999888777666666777889999999999999988774
Done!