BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043168
(473 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 166 bits (419), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 145/504 (28%), Positives = 222/504 (44%), Gaps = 71/504 (14%)
Query: 4 RKENIVMFPLMAQGHIIPFLALALHLENTNRYTITFV----NTPSNLKK-LKSSLPQN-S 57
+ ++ + P GH+IP + A L + + T+TFV PS ++ + SLP + S
Sbjct: 5 KTPHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKAQRTVLDSLPSSIS 64
Query: 58 SIHLREIPFDGIAHDLPPCTENSDSLPFHLFPNFFESTLSFKPHFRKLINGLIDEQNGHK 117
S+ L PP S + + P RK+ + + + G
Sbjct: 65 SVFL------------PPVDLTDLSSSTRIESRISLTVTRSNPELRKVFDSFV--EGGRL 110
Query: 118 PVCIIADMFFAWSAEIAQEYGIFNALFVGGGSFGFACFYSLWLNLPHRD----------S 167
P ++ D+F + ++A E+ + +F A S +L+LP D +
Sbjct: 111 PTALVVDLFGTDAFDVAVEFHVPPYIFYPTT----ANVLSFFLHLPKLDETVSCEFRELT 166
Query: 168 DEFLLPD-FPEASRIHVTQMTKFLRLA-DGSDSLSVFFQKVLPQWMNADGILFNTVEELD 225
+ +LP P A + FL A D D + ++ A+GIL NT EL+
Sbjct: 167 EPLMLPGCVPVAGK-------DFLDPAQDRKDDAYKWLLHNTKRYKEAEGILVNTFFELE 219
Query: 226 K----------IVGPLLLSTGSRAGAGKEYGISTES--CKNWLDTKPCNSVIYVSFGSQN 273
+ P + G GK+ TE C WLD +P SV+YVSFGS
Sbjct: 220 PNAIKALQEPGLDKPPVYPVGPLVNIGKQEAKQTEESECLKWLDNQPLGSVLYVSFGSGG 279
Query: 274 TIXXXXXXXXXXXXXXCGKNFIWVVKPPLG------FDLNSEFRANEWLPEGFEERIKDS 327
T+ + F+WV++ P G FD +S+ +LP GF ER K
Sbjct: 280 TLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERTKK- 338
Query: 328 GQGLVVQKWAPQVEILSHKSISAFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLE 387
+G V+ WAPQ ++L+H S FL+HCGWNS LE++ G+P+I WPL AEQ N+ LL
Sbjct: 339 -RGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLS 397
Query: 388 EVIGVCVEVARGMNCEVSKENLSAKFELVMNETEKGMDLRKKASEVEMIIKNAVRNEEKF 447
E I + G + V +E ++ + +M E E+G +R K E +K A K
Sbjct: 398 EDIRAALRPRAGDDGLVRREEVARVVKGLM-EGEEGKGVRNKMKE----LKEAACRVLKD 452
Query: 448 KGSSVKAMEQFLDAALMMKKAQKE 471
G+S KA+ AL K +KE
Sbjct: 453 DGTSTKALSL---VALKWKAHKKE 473
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 142 bits (357), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 129/476 (27%), Positives = 203/476 (42%), Gaps = 67/476 (14%)
Query: 2 AQRKENIVMFPLMAQGHIIPFLALA--LHLENTNRYTITFVNTPSNLKKLKSSLPQNSSI 59
A RK ++VM P QGHI P LA LHL + ITFVNT N K+L S +
Sbjct: 5 ANRKPHVVMIPYPVQGHINPLFKLAKLLHLRG---FHITFVNTEYNHKRLLKSRGPKAFD 61
Query: 60 HLREIPFDGIAHDLPPCTENSDSLPFHLFPNFFESTL-SFKPHFRKLINGLIDEQNGHKP 118
+ F+ I L P + D P +S +F + +L+ L N
Sbjct: 62 GFTDFNFESIPDGLTPMEGDGDV--SQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPV 119
Query: 119 VCIIADMFFAWSAEIAQEYGIFNALFVGGGS------FGFACFYSLWLNLPHRDSD---- 168
C+++D +++ + A+E+ + N L+ + F F + +P +D
Sbjct: 120 TCLVSDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGI-IPFKDESYLTN 178
Query: 169 ---EFLLPDFPEASRIHVTQMTKFLRLADGSDSLSVFFQKVLPQWMNADGILFNTVEELD 225
E + P + + F+R + +D + FF +V + IL NT EL+
Sbjct: 179 GCLETKVDWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNELE 238
Query: 226 KIVGPLLLST-------GSRAGAGKE--------------YGISTESCKNWLDTKPCNSV 264
V L ST G K+ + TE C +WL++K SV
Sbjct: 239 SDVINALSSTIPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTE-CLDWLESKEPGSV 297
Query: 265 IYVSFGSQNTIXXXXXXXXXXXXXXCGKNFIWVVKPPLGFDLNSEFRANEWLPEGFEERI 324
+YV+FGS + C K+F+W+++P L + F + F I
Sbjct: 298 VYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSE------FTNEI 351
Query: 325 KDSGQGLVVQKWAPQVEILSHKSISAFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSK 384
D G ++ W PQ ++L+H SI FL+HCGWNS E++ GVP++ WP A+Q + +
Sbjct: 352 ADRG---LIASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCR 408
Query: 385 LLEEVIGVCVEVARGM--NCEVSKENLSAKFELVM------NETEKGMDLRKKASE 432
+C E GM + V +E L+ V+ +K M+L+KKA E
Sbjct: 409 F------ICNEWEIGMEIDTNVKREELAKLINEVIAGDKGKKMKQKAMELKKKAEE 458
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 131 bits (330), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 133/498 (26%), Positives = 222/498 (44%), Gaps = 87/498 (17%)
Query: 4 RKENIVMFPLMAQGHIIPFLALALHLENTNR------YTITFVNTP---SNLKKLKSSLP 54
+ ++ P GH+ L A L N ++ + I F P S +K + +S P
Sbjct: 8 KNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQP 67
Query: 55 QNSSIHLREIPFDGIAHDLPPCTENSDSLPFHLFPNFFESTLSFKPHFRKLINGLIDEQN 114
Q I L E+ PP E S F++ F ES + PH + I ++
Sbjct: 68 QIQLIDLPEVE--------PPPQELLKSPEFYIL-TFLESLI---PHVKATIKTIL---- 111
Query: 115 GHKPVCIIADMFFAWSAEIAQEYGIFNALFVGGGSFGFACFYSLWLNLPHRDSDEFLLPD 174
+K V ++ D F ++ E+GI + LF+ F SL L+L +R +E
Sbjct: 112 SNKVVGLVLDFFCVSMIDVGNEFGIPSYLFLTSN----VGFLSLMLSLKNRQIEEV---- 163
Query: 175 FPEASRIH-------VTQMTKFLRLADG---SDSLSVFFQKVLPQWMNADGILFNTVEEL 224
F ++ R H ++ L D D + + K+ ++ + GI+ NT +L
Sbjct: 164 FDDSDRDHQLLNIPGISNQVPSNVLPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDL 223
Query: 225 DK-----------------IVGPLLLSTGSRAGAGKEYGISTESCKNWLDTKPCNSVIYV 267
++ VGPLL G K + WLD +P SV+++
Sbjct: 224 EQSSIDALYDHDEKIPPIYAVGPLLDLKGQPNP--KLDQAQHDLILKWLDEQPDKSVVFL 281
Query: 268 SFGSQN-TIXXXXXXXXXXXXXXCGKNFIWVVKPPLGFDLNSEFRANEWLPEGFEERIKD 326
FGS + G F+W S + PEGF E ++
Sbjct: 282 CFGSMGVSFGPSQIREIALGLKHSGVRFLW-----------SNSAEKKVFPEGFLEWMEL 330
Query: 327 SGQGLVVQKWAPQVEILSHKSISAFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNS-KL 385
G+G++ WAPQVE+L+HK+I F+SHCGWNS+LE++ GVPI+ WP+ AEQ N+ +L
Sbjct: 331 EGKGMIC-GWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRL 389
Query: 386 LEE---VIGVCVEVARGMNCEVSKENLSAKFELVMNETEKGMDLRKKASEVEMIIKNAVR 442
++E +G+ V+ +G + V+ E + + +M +K + KK E++ + +NAV
Sbjct: 390 VKEWGVGLGLRVDYRKGSDV-VAAEEIEKGLKDLM---DKDSIVHKKVQEMKEMSRNAVV 445
Query: 443 NEEKFKGSSVKAMEQFLD 460
+ GSS+ ++ + +D
Sbjct: 446 D----GGSSLISVGKLID 459
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 132/498 (26%), Positives = 222/498 (44%), Gaps = 87/498 (17%)
Query: 4 RKENIVMFPLMAQGHIIPFLALALHLENTNR------YTITFVNTP---SNLKKLKSSLP 54
+ ++ P GH+ L A L N ++ + I F P S +K + +S P
Sbjct: 8 KNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQP 67
Query: 55 QNSSIHLREIPFDGIAHDLPPCTENSDSLPFHLFPNFFESTLSFKPHFRKLINGLIDEQN 114
Q I L E+ PP E S F++ F ES + PH + I ++
Sbjct: 68 QIQLIDLPEVE--------PPPQELLKSPEFYIL-TFLESLI---PHVKATIKTIL---- 111
Query: 115 GHKPVCIIADMFFAWSAEIAQEYGIFNALFVGGGSFGFACFYSLWLNLPHRDSDEFLLPD 174
+K V ++ D F ++ E+GI + LF+ F SL L+L +R +E
Sbjct: 112 SNKVVGLVLDFFCVSMIDVGNEFGIPSYLFLTSN----VGFLSLMLSLKNRQIEEV---- 163
Query: 175 FPEASRIH-------VTQMTKFLRLADG---SDSLSVFFQKVLPQWMNADGILFNTVEEL 224
F ++ R H ++ L D D + + K+ ++ + GI+ NT +L
Sbjct: 164 FDDSDRDHQLLNIPGISNQVPSNVLPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDL 223
Query: 225 DK-----------------IVGPLLLSTGSRAGAGKEYGISTESCKNWLDTKPCNSVIYV 267
++ VGPLL G + + WLD +P SV+++
Sbjct: 224 EQSSIDALYDHDEKIPPIYAVGPLLDLKGQPNPKLDQ--AQHDLILKWLDEQPDKSVVFL 281
Query: 268 SFGSQN-TIXXXXXXXXXXXXXXCGKNFIWVVKPPLGFDLNSEFRANEWLPEGFEERIKD 326
FGS + G F+W S + PEGF E ++
Sbjct: 282 CFGSMGVSFGPSQIREIALGLKHSGVRFLW-----------SNSAEKKVFPEGFLEWMEL 330
Query: 327 SGQGLVVQKWAPQVEILSHKSISAFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNS-KL 385
G+G++ WAPQVE+L+HK+I F+SHCGWNS+LE++ GVPI+ WP+ AEQ N+ +L
Sbjct: 331 EGKGMIC-GWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRL 389
Query: 386 LEE---VIGVCVEVARGMNCEVSKENLSAKFELVMNETEKGMDLRKKASEVEMIIKNAVR 442
++E +G+ V+ +G + V+ E + + +M +K + KK E++ + +NAV
Sbjct: 390 VKEWGVGLGLRVDYRKGSDV-VAAEEIEKGLKDLM---DKDSIVHKKVQEMKEMSRNAVV 445
Query: 443 NEEKFKGSSVKAMEQFLD 460
+ GSS+ ++ + +D
Sbjct: 446 D----GGSSLISVGKLID 459
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 110/384 (28%), Positives = 168/384 (43%), Gaps = 67/384 (17%)
Query: 97 SFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQE-YGIFNALFVGGGSFGFACF 155
+ + +F+ +I+ + E G C++ D FF + A++A+E + + L+ G
Sbjct: 98 AMQENFKHVIDEAVAE-TGKNITCLVTDAFFWFGADLAEEMHAKWVPLWTAGPHSLLTHV 156
Query: 156 YSLWLNLP------HRDSDEFLLPDFPEASRIHVTQMTKFLRLADGSDSLSVFFQKVLPQ 209
Y+ + H +LP FPE + + + D + K+ +
Sbjct: 157 YTDLIREKTGSKEVHDVKSIDVLPGFPELKASDLPEGV----IKDIDVPFATMLHKMGLE 212
Query: 210 WMNADGILFNTVEELDKI--------------VGPLLLSTGSRAGAGKEYGISTESCKNW 255
A+ + N+ + + VGP L+T R E+G C W
Sbjct: 213 LPRANAVAINSFATIHPLIENELNSKFKLLLNVGPFNLTTPQRK-VSDEHG-----CLEW 266
Query: 256 LDTKPCNSVIYVSFGSQNTIXXXXXXXXXXXXXXCGKNFIWVVKPPLGFDLNSEFRAN-- 313
LD +SV+Y+SFGS T CG FIW FR +
Sbjct: 267 LDQHENSSVVYISFGSVVTPPPHELTALAESLEECGFPFIW------------SFRGDPK 314
Query: 314 EWLPEGFEERIKDSGQGLVVQKWAPQVEILSHKSISAFLSHCGWNSVLEALSHGVPIIGW 373
E LP+GF ER K G+ + WAPQVEIL H S+ FL+H GWNSVLE + GVP+I
Sbjct: 315 EKLPKGFLERTKTKGK---IVAWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISR 371
Query: 374 PLAAEQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAKFELVMNETEKGMDLRKKASEV 433
P +Q N+ L E V+ + V V G+ ++KE++ EL M+ +EKG +R+K
Sbjct: 372 PFFGDQGLNTILTESVLEIGVGVDNGV---LTKESIKKALELTMS-SEKGGIMRQKIV-- 425
Query: 434 EMIIKNAVRNEEKFKGSSVKAMEQ 457
K K S+ KA+EQ
Sbjct: 426 ------------KLKESAFKAVEQ 437
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 115 bits (287), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 95/369 (25%), Positives = 162/369 (43%), Gaps = 49/369 (13%)
Query: 113 QNGHKPVCIIADMFFAWSAEIAQEYGIFNALFVGGGSFGFACFY-------SLWLNLPHR 165
+ G C++AD F ++A++A E G+ F G + + ++
Sbjct: 108 ETGRPVSCLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKIGVSGIQG 167
Query: 166 DSDEFLLPDFPEASRIHVTQMTKFLRLADGSDSLSVFFQKVLPQWMNADGILFNTVEELD 225
DE LL P S++ + + + + + S ++ A + N+ EELD
Sbjct: 168 REDE-LLNFIPGMSKVRFRDLQEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSFEELD 226
Query: 226 KI--------------VGPLLLSTGSRAGAGKEYGISTESCKNWLDTKPCNSVIYVSFGS 271
+GP L T +T C WL + SV+Y+SFG+
Sbjct: 227 DSLTNDLKSKLKTYLNIGPFNLITPPPVVP------NTTGCLQWLKERKPTSVVYISFGT 280
Query: 272 QNTIXXXXXXXXXXXXXXCGKNFIWVVKPPLGFDLNSEFRANEWLPEGFEERIKDSGQGL 331
T FIW ++ +A LPEGF E+ + G G+
Sbjct: 281 VTTPPPAEVVALSEALEASRVPFIWSLRD----------KARVHLPEGFLEKTR--GYGM 328
Query: 332 VVQKWAPQVEILSHKSISAFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIG 391
VV WAPQ E+L+H+++ AF++HCGWNS+ E+++ GVP+I P +Q N +++E+V+
Sbjct: 329 VV-PWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLE 387
Query: 392 VCVEVARGMNCEVSKENLSAKFELVMNETEKGMDLRKKASEVEMIIKNAVRNEEKFKGSS 451
+ V + G+ +K L + F+ ++++ EKG LR+ + AV KGSS
Sbjct: 388 IGVRIEGGV---FTKSGLMSCFDQILSQ-EKGKKLRENLRALRETADRAVGP----KGSS 439
Query: 452 VKAMEQFLD 460
+ +D
Sbjct: 440 TENFITLVD 448
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 30/45 (66%)
Query: 335 KWAPQVEILSHKSISAFLSHCGWNSVLEALSHGVPIIGWPLAAEQ 379
KW PQ ++L H AF++H G N + EA+ HG+P +G PL A+Q
Sbjct: 74 KWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQ 118
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 11/80 (13%)
Query: 333 VQKWAPQVEILSHKSISAFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGV 392
V +W PQ++IL+ S AF++H G S +EALS+ VP++ P AEQ N++ + E+
Sbjct: 309 VHQWVPQLDILTKAS--AFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVEL--- 363
Query: 393 CVEVARGMNCEVSKENLSAK 412
G+ + ++ ++A+
Sbjct: 364 ------GLGRHIPRDQVTAE 377
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 8/102 (7%)
Query: 333 VQKWAPQVEILSHKSISAFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGV 392
V W PQ+ IL + F++H G E L+ P+I P A +QF N+ +L+
Sbjct: 287 VHDWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADMLQ----- 339
Query: 393 CVEVARGMNCEVSKENLSAKFELVM-NETEKGMDLRKKASEV 433
+ VAR + E + +L + L + ++ E LR+ +E+
Sbjct: 340 GLGVARKLATEEATADLLRETALALVDDPEVARRLRRIQAEM 381
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 35.4 bits (80), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 333 VQKWAPQVEILSHKSISAFLSHCGWNSVLEALSHGVPIIGWPLAAEQF 380
++ W PQ +L H + + H G + L AL GVP + +P A + F
Sbjct: 296 LESWVPQAALLPH--VDLVVHHGGSGTTLGALGAGVPQLSFPWAGDSF 341
>pdb|1M2V|B Chain B, Crystal Structure Of The Yeast Sec2324 HETERODIMER
Length = 926
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 375 LAAEQFYNSKLLEEVIGVCVEVARGM-NCEVSKENLSAKFELVMNETEKGMDLR 427
LA FYNSK +E+ + ++ AR + N V + K E+V++ T G LR
Sbjct: 649 LAIASFYNSKAVEKALNSSLDDARVLINKSVQDILATYKKEIVVSNTAGGAPLR 702
>pdb|4G2T|A Chain A, Crystal Structure Of Streptomyces Sp. Sf2575
Glycosyltransferase Ssfs6, Complexed With Thymidine
Diphosphate
Length = 397
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 351 FLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEV 396
+ H G + L LS GVP + P+ AE + +++LL G VEV
Sbjct: 303 VVHHGGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAA-GAGVEV 347
>pdb|4FZR|A Chain A, Crystal Structure Of Ssfs6, Streptomyces Sp. Sf2575
Glycosyltransferase
Length = 398
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 354 HCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEV 396
H G + L LS GVP + P+ AE + +++LL G VEV
Sbjct: 307 HGGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAA-GAGVEV 348
>pdb|1PCX|A Chain A, Crystal Structure Of The Copii Coat Subunit, Sec24,
Complexed With A Peptide From The Snare Protein Bet1
pdb|1PD0|A Chain A, Crystal Structure Of The Copii Coat Subunit, Sec24,
Complexed With A Peptide From The Snare Protein Sed5
(Yeast Syntaxin-5)
pdb|1PD1|A Chain A, Crystal Structure Of The Copii Coat Subunit, Sec24,
Complexed With A Peptide Containing The Dxe Cargo
Sorting Signal Of Yeast Sys1 Protein
Length = 810
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 375 LAAEQFYNSKLLEEVIGVCVEVARGM-NCEVSKENLSAKFELVMNETEKGMDLR 427
LA FYNSK +E+ + ++ AR + N V + K E+V++ T G LR
Sbjct: 533 LAIASFYNSKAVEKALNSSLDDARVLINKSVQDILATYKKEIVVSNTAGGAPLR 586
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,708,366
Number of Sequences: 62578
Number of extensions: 566793
Number of successful extensions: 1387
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1358
Number of HSP's gapped (non-prelim): 23
length of query: 473
length of database: 14,973,337
effective HSP length: 102
effective length of query: 371
effective length of database: 8,590,381
effective search space: 3187031351
effective search space used: 3187031351
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)