Query 043168
Match_columns 473
No_of_seqs 132 out of 1478
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 13:34:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043168.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043168hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02863 UDP-glucoronosyl/UDP- 100.0 8.3E-62 1.8E-66 486.8 45.7 436 4-464 8-471 (477)
2 PLN03007 UDP-glucosyltransfera 100.0 5.6E-61 1.2E-65 485.0 43.9 440 1-464 1-480 (482)
3 PLN02173 UDP-glucosyl transfer 100.0 2.1E-60 4.5E-65 471.2 43.9 422 1-463 1-447 (449)
4 PLN02534 UDP-glycosyltransfera 100.0 4.4E-60 9.5E-65 473.3 44.3 442 4-464 7-486 (491)
5 PLN02764 glycosyltransferase f 100.0 4.7E-60 1E-64 467.1 42.6 427 1-465 1-446 (453)
6 PLN02992 coniferyl-alcohol glu 100.0 1.3E-59 2.7E-64 468.1 44.9 428 1-464 1-469 (481)
7 PLN02670 transferase, transfer 100.0 1.2E-59 2.6E-64 467.9 44.1 438 4-466 5-467 (472)
8 PLN02208 glycosyltransferase f 100.0 1.5E-59 3.3E-64 466.2 41.7 420 4-464 3-439 (442)
9 PLN02555 limonoid glucosyltran 100.0 4.3E-59 9.3E-64 465.6 44.0 434 4-465 6-470 (480)
10 PLN02410 UDP-glucoronosyl/UDP- 100.0 4.9E-59 1.1E-63 463.6 44.0 419 4-463 6-449 (451)
11 PLN02210 UDP-glucosyl transfer 100.0 5.3E-59 1.1E-63 465.3 44.2 420 3-463 6-454 (456)
12 PLN00414 glycosyltransferase f 100.0 6.3E-59 1.4E-63 462.3 42.5 421 4-466 3-442 (446)
13 PLN02152 indole-3-acetate beta 100.0 1E-58 2.2E-63 460.0 43.1 433 4-462 2-454 (455)
14 PLN02562 UDP-glycosyltransfera 100.0 1.6E-58 3.4E-63 461.5 43.2 415 1-462 1-447 (448)
15 PLN00164 glucosyltransferase; 100.0 7.5E-58 1.6E-62 459.9 43.0 427 3-465 1-474 (480)
16 PLN02207 UDP-glycosyltransfera 100.0 1.7E-57 3.7E-62 452.1 42.4 426 3-464 1-465 (468)
17 PLN03015 UDP-glucosyl transfer 100.0 2.6E-57 5.6E-62 448.9 42.8 424 5-462 3-466 (470)
18 PLN02448 UDP-glycosyltransfera 100.0 5.3E-57 1.1E-61 453.9 43.5 417 4-464 9-457 (459)
19 PLN03004 UDP-glycosyltransfera 100.0 2.5E-57 5.4E-62 449.5 39.7 418 4-453 2-450 (451)
20 PLN02554 UDP-glycosyltransfera 100.0 3.4E-56 7.4E-61 449.6 41.4 426 4-465 1-479 (481)
21 PLN02167 UDP-glycosyltransfera 100.0 1.2E-54 2.6E-59 437.7 42.5 431 4-464 2-472 (475)
22 PHA03392 egt ecdysteroid UDP-g 100.0 1.9E-46 4.1E-51 379.8 27.0 386 6-440 21-449 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 3.2E-47 7E-52 391.8 0.2 383 7-440 2-426 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 2E-41 4.4E-46 338.0 31.8 379 11-462 1-390 (392)
25 cd03784 GT1_Gtf_like This fami 100.0 7.7E-42 1.7E-46 342.5 24.4 358 6-438 1-386 (401)
26 COG1819 Glycosyl transferases, 100.0 3.5E-41 7.6E-46 332.5 23.9 382 5-463 1-399 (406)
27 KOG1192 UDP-glucuronosyl and U 100.0 3.7E-36 7.9E-41 309.7 24.6 396 5-438 5-437 (496)
28 PRK12446 undecaprenyldiphospho 99.9 9.3E-26 2E-30 220.0 24.6 311 6-420 2-326 (352)
29 PF13528 Glyco_trans_1_3: Glyc 99.9 7.7E-24 1.7E-28 205.5 25.5 297 6-416 1-317 (318)
30 COG0707 MurG UDP-N-acetylgluco 99.9 1.1E-22 2.3E-27 196.2 26.3 325 6-433 1-338 (357)
31 TIGR00661 MJ1255 conserved hyp 99.9 3.1E-22 6.8E-27 193.9 24.1 306 7-420 1-315 (321)
32 PRK00726 murG undecaprenyldiph 99.8 5E-18 1.1E-22 167.5 29.8 341 6-462 2-355 (357)
33 cd03785 GT1_MurG MurG is an N- 99.8 1.2E-16 2.5E-21 157.3 28.1 320 7-430 1-335 (350)
34 TIGR01133 murG undecaprenyldip 99.7 1.7E-15 3.8E-20 148.8 27.2 306 7-420 2-322 (348)
35 TIGR00215 lpxB lipid-A-disacch 99.7 5.4E-16 1.2E-20 153.6 21.6 352 6-460 6-384 (385)
36 TIGR03590 PseG pseudaminic aci 99.7 1.5E-15 3.3E-20 143.5 21.9 105 263-385 171-278 (279)
37 COG4671 Predicted glycosyl tra 99.7 2.5E-14 5.4E-19 131.8 25.6 321 5-420 9-366 (400)
38 PRK13609 diacylglycerol glucos 99.7 1E-14 2.2E-19 145.1 23.2 136 261-420 201-339 (380)
39 PRK00025 lpxB lipid-A-disaccha 99.6 3.4E-14 7.5E-19 141.4 22.0 107 340-462 256-375 (380)
40 PRK13608 diacylglycerol glucos 99.6 1.6E-13 3.4E-18 136.8 21.4 147 261-432 201-351 (391)
41 PF04101 Glyco_tran_28_C: Glyc 99.5 1.3E-15 2.8E-20 133.2 0.6 137 264-420 1-145 (167)
42 PLN02605 monogalactosyldiacylg 99.4 8E-11 1.7E-15 117.1 25.1 136 261-420 205-349 (382)
43 PF03033 Glyco_transf_28: Glyc 99.3 3.2E-12 6.9E-17 108.0 7.4 126 8-150 1-133 (139)
44 PLN02871 UDP-sulfoquinovose:DA 99.3 3.6E-09 7.7E-14 108.2 31.1 142 264-435 264-416 (465)
45 TIGR03492 conserved hypothetic 99.3 2.1E-09 4.6E-14 106.8 26.1 137 262-420 205-365 (396)
46 cd03814 GT1_like_2 This family 99.2 2.1E-08 4.5E-13 98.5 30.1 95 328-434 246-347 (364)
47 COG3980 spsG Spore coat polysa 99.2 1.5E-09 3.3E-14 97.6 19.3 292 6-434 1-304 (318)
48 cd03794 GT1_wbuB_like This fam 99.1 1.3E-07 2.8E-12 93.3 29.9 148 262-435 219-381 (394)
49 cd03817 GT1_UGDG_like This fam 99.1 1.5E-07 3.3E-12 92.5 29.4 97 328-437 258-361 (374)
50 cd03823 GT1_ExpE7_like This fa 99.1 1E-07 2.2E-12 93.3 26.0 142 262-430 190-340 (359)
51 cd03816 GT1_ALG1_like This fam 99.1 2.4E-07 5.2E-12 93.2 29.0 92 329-434 294-399 (415)
52 cd03800 GT1_Sucrose_synthase T 99.0 2.3E-07 5E-12 92.6 26.4 94 328-433 282-382 (398)
53 cd03808 GT1_cap1E_like This fa 99.0 6E-07 1.3E-11 87.5 28.7 147 262-433 187-343 (359)
54 cd04962 GT1_like_5 This family 99.0 8.9E-07 1.9E-11 87.6 30.1 94 328-433 252-350 (371)
55 TIGR00236 wecB UDP-N-acetylglu 99.0 4.3E-07 9.3E-12 89.9 26.4 85 328-430 254-341 (365)
56 PRK05749 3-deoxy-D-manno-octul 99.0 8.6E-07 1.9E-11 89.6 28.8 97 331-436 304-405 (425)
57 cd03820 GT1_amsD_like This fam 99.0 1E-06 2.3E-11 85.4 28.2 97 328-436 234-336 (348)
58 PRK10307 putative glycosyl tra 98.9 7.3E-06 1.6E-10 82.5 34.2 98 328-435 283-389 (412)
59 cd03786 GT1_UDP-GlcNAc_2-Epime 98.9 2.2E-07 4.7E-12 91.9 22.6 134 261-420 197-338 (363)
60 cd03801 GT1_YqgM_like This fam 98.9 1.7E-06 3.7E-11 84.4 28.7 91 328-430 255-352 (374)
61 cd03818 GT1_ExpC_like This fam 98.9 2E-06 4.2E-11 86.2 27.6 99 328-436 280-383 (396)
62 cd03795 GT1_like_4 This family 98.9 2.9E-06 6.3E-11 83.3 28.2 148 263-436 191-349 (357)
63 cd03798 GT1_wlbH_like This fam 98.8 1.1E-05 2.3E-10 79.0 30.2 81 328-420 258-345 (377)
64 COG1519 KdtA 3-deoxy-D-manno-o 98.8 6E-06 1.3E-10 79.6 26.7 316 11-439 54-406 (419)
65 PF04007 DUF354: Protein of un 98.8 1.2E-05 2.6E-10 77.3 28.1 290 17-417 11-308 (335)
66 cd03805 GT1_ALG2_like This fam 98.8 2.1E-05 4.5E-10 78.5 30.3 93 328-433 279-378 (392)
67 cd03819 GT1_WavL_like This fam 98.8 1.6E-05 3.6E-10 77.9 29.1 154 262-435 184-347 (355)
68 cd03821 GT1_Bme6_like This fam 98.7 1.3E-05 2.9E-10 78.5 27.6 92 328-433 261-359 (375)
69 cd05844 GT1_like_7 Glycosyltra 98.7 6.3E-06 1.4E-10 81.3 25.1 94 328-433 244-350 (367)
70 cd03796 GT1_PIG-A_like This fa 98.7 1.4E-05 3E-10 80.2 27.6 131 262-420 192-334 (398)
71 cd03811 GT1_WabH_like This fam 98.7 6.8E-06 1.5E-10 79.7 24.7 81 328-420 245-333 (353)
72 TIGR02468 sucrsPsyn_pln sucros 98.7 3.3E-05 7.2E-10 83.7 30.7 98 328-435 547-653 (1050)
73 TIGR03568 NeuC_NnaA UDP-N-acet 98.7 2.6E-05 5.7E-10 76.8 27.7 130 262-417 201-337 (365)
74 cd03825 GT1_wcfI_like This fam 98.7 2E-05 4.4E-10 77.5 26.7 94 328-433 243-344 (365)
75 cd03799 GT1_amsK_like This is 98.7 2.3E-05 4.9E-10 76.8 26.3 94 328-433 235-341 (355)
76 cd03807 GT1_WbnK_like This fam 98.6 7E-05 1.5E-09 73.1 28.8 90 328-431 250-344 (365)
77 TIGR03087 stp1 sugar transfera 98.6 1.1E-05 2.3E-10 80.9 22.2 93 328-434 279-377 (397)
78 TIGR02472 sucr_P_syn_N sucrose 98.6 0.0001 2.3E-09 74.8 29.5 95 328-432 316-419 (439)
79 cd04951 GT1_WbdM_like This fam 98.6 3.7E-05 8.1E-10 75.4 25.4 79 328-420 244-327 (360)
80 TIGR03449 mycothiol_MshA UDP-N 98.6 0.00013 2.9E-09 73.1 29.7 95 328-434 282-383 (405)
81 PRK09922 UDP-D-galactose:(gluc 98.6 5E-05 1.1E-09 75.0 25.7 132 264-421 181-326 (359)
82 TIGR03088 stp2 sugar transfera 98.5 7.2E-05 1.6E-09 74.2 26.2 93 329-433 255-352 (374)
83 cd03822 GT1_ecORF704_like This 98.5 4.6E-05 9.9E-10 74.8 24.5 96 328-436 246-351 (366)
84 KOG3349 Predicted glycosyltran 98.5 1.2E-06 2.6E-11 71.3 9.2 118 264-395 5-131 (170)
85 cd03812 GT1_CapH_like This fam 98.5 0.00014 2.9E-09 71.5 26.0 132 262-420 191-332 (358)
86 cd03802 GT1_AviGT4_like This f 98.4 0.00013 2.8E-09 70.9 24.8 127 265-420 173-309 (335)
87 TIGR02470 sucr_synth sucrose s 98.4 0.00078 1.7E-08 71.6 30.3 94 329-432 619-726 (784)
88 PLN02846 digalactosyldiacylgly 98.4 0.00031 6.6E-09 70.7 26.1 74 332-420 287-364 (462)
89 PF02350 Epimerase_2: UDP-N-ac 98.4 8.1E-06 1.8E-10 79.6 14.3 134 260-420 178-319 (346)
90 PLN02275 transferase, transfer 98.4 0.00088 1.9E-08 66.4 28.9 76 328-417 285-371 (371)
91 cd04955 GT1_like_6 This family 98.3 0.00022 4.7E-09 70.1 24.3 89 328-432 247-343 (363)
92 PRK15179 Vi polysaccharide bio 98.3 0.0028 6.1E-08 67.3 31.9 97 328-434 573-674 (694)
93 PRK14089 ipid-A-disaccharide s 98.3 5.7E-05 1.2E-09 73.2 17.7 150 262-437 167-332 (347)
94 COG0381 WecB UDP-N-acetylgluco 98.3 0.00071 1.5E-08 65.0 24.4 327 5-429 3-347 (383)
95 TIGR02149 glgA_Coryne glycogen 98.3 0.0017 3.7E-08 64.6 28.6 94 330-433 261-366 (388)
96 cd03809 GT1_mtfB_like This fam 98.2 0.00023 4.9E-09 69.8 21.8 91 328-432 252-349 (365)
97 PLN00142 sucrose synthase 98.2 0.0011 2.3E-08 70.7 25.3 73 350-432 669-749 (815)
98 cd03804 GT1_wbaZ_like This fam 98.1 0.00021 4.6E-09 70.1 19.0 127 265-420 197-327 (351)
99 cd03792 GT1_Trehalose_phosphor 98.1 0.0031 6.7E-08 62.5 26.1 92 328-433 251-351 (372)
100 PF02684 LpxB: Lipid-A-disacch 98.1 0.00064 1.4E-08 66.4 20.4 157 261-439 183-356 (373)
101 PRK01021 lpxB lipid-A-disaccha 98.1 0.0021 4.5E-08 66.0 24.2 161 260-437 411-589 (608)
102 PLN02949 transferase, transfer 98.0 0.014 3.1E-07 59.3 29.4 97 328-436 334-440 (463)
103 cd03791 GT1_Glycogen_synthase_ 97.9 0.01 2.2E-07 61.0 26.8 137 263-419 296-442 (476)
104 cd03806 GT1_ALG11_like This fa 97.9 0.022 4.8E-07 57.4 28.6 79 328-420 304-393 (419)
105 PLN02501 digalactosyldiacylgly 97.8 0.0023 5.1E-08 66.3 20.1 76 330-420 602-682 (794)
106 PF13844 Glyco_transf_41: Glyc 97.8 0.00047 1E-08 68.8 14.7 152 261-430 283-441 (468)
107 PRK00654 glgA glycogen synthas 97.8 0.02 4.4E-07 58.6 26.9 136 263-418 282-427 (466)
108 TIGR02095 glgA glycogen/starch 97.7 0.012 2.5E-07 60.5 24.2 135 264-418 292-436 (473)
109 cd04950 GT1_like_1 Glycosyltra 97.7 0.056 1.2E-06 53.6 28.5 79 328-420 253-341 (373)
110 cd04946 GT1_AmsK_like This fam 97.7 0.0011 2.3E-08 66.7 16.0 98 328-434 288-392 (407)
111 PF00534 Glycos_transf_1: Glyc 97.7 0.00042 9.2E-09 60.3 11.4 93 328-432 72-171 (172)
112 cd03813 GT1_like_3 This family 97.7 0.021 4.5E-07 58.7 25.4 94 328-432 353-455 (475)
113 cd04949 GT1_gtfA_like This fam 97.7 0.0049 1.1E-07 61.0 20.1 101 328-437 260-363 (372)
114 COG0763 LpxB Lipid A disacchar 97.7 0.025 5.3E-07 54.6 22.9 182 252-462 178-379 (381)
115 COG5017 Uncharacterized conser 97.7 0.00062 1.3E-08 54.7 10.2 111 265-398 2-123 (161)
116 TIGR02918 accessory Sec system 97.6 0.022 4.8E-07 58.6 22.8 103 328-437 375-484 (500)
117 PRK15427 colanic acid biosynth 97.5 0.0048 1E-07 61.9 16.6 94 328-433 278-385 (406)
118 PRK15484 lipopolysaccharide 1, 97.4 0.0091 2E-07 59.4 17.9 82 328-420 256-345 (380)
119 cd01635 Glycosyltransferase_GT 97.1 0.061 1.3E-06 48.4 18.6 49 328-378 160-216 (229)
120 PRK15490 Vi polysaccharide bio 97.1 0.42 9.2E-06 49.2 27.2 74 328-413 454-532 (578)
121 TIGR02193 heptsyl_trn_I lipopo 97.0 0.055 1.2E-06 52.4 17.9 45 7-51 1-46 (319)
122 PF13692 Glyco_trans_1_4: Glyc 97.0 0.0021 4.6E-08 53.3 6.9 80 328-419 52-135 (135)
123 PRK10422 lipopolysaccharide co 97.0 0.18 3.8E-06 49.6 21.0 111 1-143 1-113 (352)
124 PF13477 Glyco_trans_4_2: Glyc 96.6 0.03 6.5E-07 46.6 10.9 102 7-146 1-107 (139)
125 PRK09814 beta-1,6-galactofuran 96.4 0.02 4.3E-07 55.8 10.0 97 328-438 206-317 (333)
126 PF06722 DUF1205: Protein of u 96.2 0.0068 1.5E-07 47.0 4.3 55 247-301 25-84 (97)
127 PLN02316 synthase/transferase 96.1 3.1 6.6E-05 46.4 32.3 83 329-419 900-998 (1036)
128 TIGR02201 heptsyl_trn_III lipo 96.1 0.57 1.2E-05 45.8 18.0 106 7-143 1-108 (344)
129 PRK10916 ADP-heptose:LPS hepto 95.9 1.1 2.4E-05 43.9 19.2 104 7-143 2-106 (348)
130 TIGR02195 heptsyl_trn_II lipop 95.7 1.2 2.6E-05 43.3 18.3 102 7-142 1-104 (334)
131 PRK14098 glycogen synthase; Pr 95.3 0.62 1.3E-05 48.0 15.5 132 264-417 308-449 (489)
132 PRK14099 glycogen synthase; Pr 95.2 4.4 9.6E-05 41.7 28.7 38 4-44 2-47 (485)
133 KOG4626 O-linked N-acetylgluco 95.2 0.31 6.6E-06 49.7 12.1 144 261-420 757-905 (966)
134 COG1817 Uncharacterized protei 95.1 3 6.6E-05 39.2 21.4 103 14-147 8-113 (346)
135 PRK10017 colanic acid biosynth 95.1 1.5 3.2E-05 44.1 17.0 154 252-420 224-393 (426)
136 cd03789 GT1_LPS_heptosyltransf 95.1 1.7 3.6E-05 41.1 16.7 45 7-51 1-46 (279)
137 PF06258 Mito_fiss_Elm1: Mitoc 95.0 2.7 5.8E-05 40.4 17.8 39 338-377 221-259 (311)
138 PRK10964 ADP-heptose:LPS hepto 95.0 3.6 7.9E-05 39.7 19.4 45 7-51 2-47 (322)
139 PF13579 Glyco_trans_4_4: Glyc 94.8 0.07 1.5E-06 45.1 5.9 96 20-146 5-104 (160)
140 PHA01633 putative glycosyl tra 94.7 0.85 1.8E-05 44.2 13.6 85 328-420 200-308 (335)
141 COG0859 RfaF ADP-heptose:LPS h 94.2 4.4 9.5E-05 39.4 17.6 106 6-144 2-108 (334)
142 COG3914 Spy Predicted O-linked 93.6 2.5 5.4E-05 43.2 14.4 137 260-413 427-572 (620)
143 PF13524 Glyco_trans_1_2: Glyc 92.8 0.95 2.1E-05 34.5 8.5 65 354-430 9-73 (92)
144 PF12000 Glyco_trans_4_3: Gkyc 92.3 1.5 3.4E-05 37.8 9.7 92 33-145 2-95 (171)
145 PHA01630 putative group 1 glyc 91.2 8.5 0.00018 37.4 14.8 73 336-420 197-295 (331)
146 PF13439 Glyco_transf_4: Glyco 90.6 1.3 2.9E-05 37.7 8.0 29 15-44 11-39 (177)
147 PF08660 Alg14: Oligosaccharid 90.1 3.2 6.9E-05 36.0 9.6 111 11-144 3-127 (170)
148 TIGR02400 trehalose_OtsA alpha 89.8 4.1 9E-05 41.5 11.7 104 334-463 341-455 (456)
149 COG1618 Predicted nucleotide k 89.5 1.4 3E-05 37.4 6.5 59 1-65 1-59 (179)
150 PRK10125 putative glycosyl tra 89.4 11 0.00025 37.7 14.5 71 330-413 287-365 (405)
151 TIGR03713 acc_sec_asp1 accesso 88.6 1.3 2.8E-05 45.8 7.2 93 329-438 409-507 (519)
152 PRK02261 methylaspartate mutas 88.5 1.2 2.6E-05 37.0 5.7 45 4-49 2-46 (137)
153 COG4370 Uncharacterized protei 87.3 2.7 5.9E-05 39.3 7.5 84 335-431 301-387 (412)
154 TIGR02919 accessory Sec system 86.3 18 0.00039 36.6 13.6 80 329-420 328-412 (438)
155 PF07429 Glyco_transf_56: 4-al 85.7 21 0.00046 34.5 12.8 82 329-418 245-332 (360)
156 COG0003 ArsA Predicted ATPase 85.6 5.2 0.00011 38.5 9.0 44 7-51 3-47 (322)
157 COG3660 Predicted nucleoside-d 84.5 34 0.00074 31.7 18.4 78 281-373 187-271 (329)
158 KOG2941 Beta-1,4-mannosyltrans 84.2 41 0.0009 32.4 28.9 127 4-151 11-142 (444)
159 PRK02797 4-alpha-L-fucosyltran 83.1 32 0.0007 32.7 12.6 81 329-417 206-292 (322)
160 cd02067 B12-binding B12 bindin 82.9 2.4 5.3E-05 34.1 4.8 38 7-45 1-38 (119)
161 TIGR00715 precor6x_red precorr 82.0 10 0.00022 35.2 9.1 90 7-144 2-98 (256)
162 PRK08305 spoVFB dipicolinate s 80.3 3.1 6.7E-05 36.8 4.7 49 1-50 1-49 (196)
163 cd03788 GT1_TPS Trehalose-6-Ph 79.3 11 0.00025 38.4 9.3 73 333-420 345-428 (460)
164 COG2894 MinD Septum formation 78.7 12 0.00025 33.7 7.7 37 7-44 3-41 (272)
165 PLN03063 alpha,alpha-trehalose 78.4 15 0.00032 40.4 10.2 106 336-467 363-480 (797)
166 PRK06849 hypothetical protein; 78.4 11 0.00023 37.6 8.6 37 4-45 3-39 (389)
167 PF02441 Flavoprotein: Flavopr 77.3 3.6 7.8E-05 33.8 4.1 44 6-51 1-44 (129)
168 PLN02939 transferase, transfer 77.2 1E+02 0.0022 34.5 15.7 83 328-418 836-930 (977)
169 PF05159 Capsule_synth: Capsul 77.0 30 0.00064 32.4 10.7 44 329-375 183-226 (269)
170 PRK08057 cobalt-precorrin-6x r 76.9 10 0.00022 35.1 7.3 89 6-144 3-98 (248)
171 PF02844 GARS_N: Phosphoribosy 75.9 15 0.00032 28.6 6.8 86 6-142 1-90 (100)
172 TIGR01470 cysG_Nterm siroheme 74.5 44 0.00095 29.9 10.6 149 262-440 10-165 (205)
173 cd07039 TPP_PYR_POX Pyrimidine 74.4 45 0.00097 28.6 10.3 27 348-374 64-96 (164)
174 cd03793 GT1_Glycogen_synthase_ 74.3 12 0.00026 39.0 7.6 78 338-420 467-553 (590)
175 PF02951 GSH-S_N: Prokaryotic 72.3 6.7 0.00015 31.6 4.3 38 6-44 1-41 (119)
176 PRK02155 ppnK NAD(+)/NADH kina 72.1 25 0.00054 33.4 8.8 53 348-420 64-120 (291)
177 PF00551 Formyl_trans_N: Formy 72.0 26 0.00056 30.6 8.4 106 6-147 1-110 (181)
178 TIGR02398 gluc_glyc_Psyn gluco 72.0 1.3E+02 0.0027 31.1 15.0 109 331-464 364-482 (487)
179 PRK05986 cob(I)alamin adenolsy 71.9 46 0.001 29.3 9.7 100 5-128 22-126 (191)
180 PRK06718 precorrin-2 dehydroge 71.8 67 0.0015 28.6 11.1 147 261-440 10-165 (202)
181 PF02571 CbiJ: Precorrin-6x re 71.6 14 0.0003 34.3 6.8 91 6-144 1-99 (249)
182 PF04413 Glycos_transf_N: 3-De 71.4 18 0.00039 31.8 7.3 98 8-145 24-125 (186)
183 cd00532 MGS-like MGS-like doma 70.2 35 0.00075 27.1 8.1 85 18-144 10-105 (112)
184 PRK13932 stationary phase surv 70.1 47 0.001 30.8 9.9 40 4-46 4-43 (257)
185 PF00731 AIRC: AIR carboxylase 70.1 66 0.0014 27.1 11.7 140 263-439 1-148 (150)
186 smart00851 MGS MGS-like domain 69.6 39 0.00085 25.4 8.0 79 22-142 2-89 (90)
187 COG1703 ArgK Putative periplas 69.6 60 0.0013 30.8 10.3 123 5-147 51-175 (323)
188 COG0496 SurE Predicted acid ph 68.8 17 0.00036 33.5 6.5 30 18-49 12-41 (252)
189 PRK06067 flagellar accessory p 68.6 13 0.00028 33.9 6.1 42 7-49 27-68 (234)
190 PRK05973 replicative DNA helic 68.3 19 0.00041 33.1 6.9 43 8-51 67-109 (237)
191 PRK14501 putative bifunctional 68.2 21 0.00045 38.9 8.4 115 332-468 345-466 (726)
192 PRK04885 ppnK inorganic polyph 67.9 11 0.00024 35.3 5.3 53 348-420 36-94 (265)
193 cd02070 corrinoid_protein_B12- 67.5 13 0.00027 33.2 5.5 42 5-47 82-123 (201)
194 PF04464 Glyphos_transf: CDP-G 67.3 9.4 0.0002 37.6 5.1 115 328-459 251-368 (369)
195 COG2185 Sbm Methylmalonyl-CoA 67.2 12 0.00026 31.1 4.8 40 4-44 11-50 (143)
196 PF06506 PrpR_N: Propionate ca 66.8 14 0.0003 32.1 5.6 71 344-419 31-124 (176)
197 COG1066 Sms Predicted ATP-depe 66.7 8.3 0.00018 38.0 4.3 43 7-51 95-137 (456)
198 PRK12342 hypothetical protein; 65.8 11 0.00024 35.0 4.9 39 100-145 99-143 (254)
199 cd01985 ETF The electron trans 65.3 56 0.0012 28.4 9.2 41 97-144 78-121 (181)
200 PF12146 Hydrolase_4: Putative 64.3 16 0.00035 26.9 4.7 36 5-41 15-50 (79)
201 PRK13789 phosphoribosylamine-- 64.2 23 0.0005 35.8 7.3 36 1-43 1-36 (426)
202 PF02310 B12-binding: B12 bind 64.1 19 0.00041 28.7 5.6 38 6-44 1-38 (121)
203 cd07038 TPP_PYR_PDC_IPDC_like 64.0 75 0.0016 27.1 9.5 28 348-375 60-93 (162)
204 cd07037 TPP_PYR_MenD Pyrimidin 64.0 62 0.0013 27.7 8.9 27 348-374 61-93 (162)
205 TIGR02370 pyl_corrinoid methyl 64.0 16 0.00036 32.4 5.5 44 5-49 84-127 (197)
206 cd00984 DnaB_C DnaB helicase C 63.6 44 0.00094 30.5 8.6 43 8-51 16-59 (242)
207 PRK05595 replicative DNA helic 63.3 32 0.00069 35.0 8.2 43 8-51 204-247 (444)
208 PLN02470 acetolactate synthase 63.1 43 0.00093 35.4 9.4 28 347-374 76-109 (585)
209 PF06925 MGDG_synth: Monogalac 63.0 20 0.00044 30.8 5.9 42 96-144 75-122 (169)
210 cd01424 MGS_CPS_II Methylglyox 63.0 70 0.0015 25.1 8.5 84 18-144 11-101 (110)
211 PRK09165 replicative DNA helic 62.8 33 0.00071 35.4 8.2 43 8-51 220-277 (497)
212 cd00550 ArsA_ATPase Oxyanion-t 62.7 20 0.00044 33.3 6.1 37 8-45 3-39 (254)
213 PF04127 DFP: DNA / pantothena 62.3 4.3 9.4E-05 35.7 1.5 39 5-44 3-53 (185)
214 PF02142 MGS: MGS-like domain 62.1 14 0.00031 28.3 4.2 85 22-143 2-95 (95)
215 cd02071 MM_CoA_mut_B12_BD meth 62.0 18 0.00038 29.3 5.0 37 7-44 1-37 (122)
216 PRK13934 stationary phase surv 61.5 97 0.0021 28.9 10.1 37 7-46 2-38 (266)
217 cd07035 TPP_PYR_POX_like Pyrim 61.0 92 0.002 26.0 9.5 28 348-375 60-93 (155)
218 PRK05647 purN phosphoribosylgl 61.0 64 0.0014 28.7 8.7 101 6-145 2-109 (200)
219 PRK07313 phosphopantothenoylcy 60.5 12 0.00027 32.7 4.0 44 6-51 2-45 (182)
220 PRK06321 replicative DNA helic 60.2 58 0.0012 33.4 9.3 43 8-51 229-272 (472)
221 cd01423 MGS_CPS_I_III Methylgl 60.1 75 0.0016 25.2 8.3 94 10-143 4-106 (116)
222 PRK14077 pnk inorganic polypho 60.1 17 0.00036 34.5 5.1 53 348-420 65-121 (287)
223 PRK05920 aromatic acid decarbo 60.0 15 0.00032 32.8 4.4 45 5-51 3-47 (204)
224 COG0052 RpsB Ribosomal protein 59.3 72 0.0016 29.2 8.6 33 117-149 156-190 (252)
225 COG2874 FlaH Predicted ATPases 58.7 26 0.00057 31.4 5.6 101 13-131 36-137 (235)
226 PRK06029 3-octaprenyl-4-hydrox 58.6 15 0.00032 32.3 4.1 44 6-51 2-46 (185)
227 COG1484 DnaC DNA replication p 58.6 15 0.00032 34.1 4.4 46 5-51 105-150 (254)
228 PRK08760 replicative DNA helic 58.2 31 0.00067 35.4 7.0 44 8-51 232-275 (476)
229 PRK02649 ppnK inorganic polyph 58.1 17 0.00036 34.8 4.7 53 348-420 69-125 (305)
230 PRK03359 putative electron tra 57.6 19 0.00042 33.4 4.9 40 100-146 102-147 (256)
231 cd00561 CobA_CobO_BtuR ATP:cor 57.0 1.2E+02 0.0027 25.8 11.2 34 7-41 4-37 (159)
232 cd01121 Sms Sms (bacterial rad 56.9 27 0.00058 34.5 6.1 42 8-50 85-126 (372)
233 PRK06249 2-dehydropantoate 2-r 56.6 20 0.00043 34.5 5.1 44 1-51 1-44 (313)
234 cd02069 methionine_synthase_B1 56.0 27 0.00059 31.5 5.5 45 4-49 87-131 (213)
235 PRK10867 signal recognition pa 55.8 67 0.0014 32.5 8.7 42 7-49 102-144 (433)
236 PRK13933 stationary phase surv 55.6 1.7E+02 0.0038 27.1 11.2 38 7-47 2-39 (253)
237 PRK04539 ppnK inorganic polyph 55.5 21 0.00046 33.9 5.0 53 348-420 69-125 (296)
238 PRK01911 ppnK inorganic polyph 55.3 21 0.00046 33.9 4.9 53 348-420 65-121 (292)
239 PRK14098 glycogen synthase; Pr 55.3 21 0.00046 36.7 5.4 41 1-44 1-49 (489)
240 PF01075 Glyco_transf_9: Glyco 54.9 53 0.0012 30.0 7.6 97 261-373 104-208 (247)
241 PRK07206 hypothetical protein; 54.7 48 0.001 33.2 7.8 33 5-43 2-34 (416)
242 PRK07710 acetolactate synthase 54.1 56 0.0012 34.4 8.4 27 348-374 79-111 (571)
243 PRK08506 replicative DNA helic 54.0 67 0.0015 32.9 8.7 43 8-51 195-237 (472)
244 COG1422 Predicted membrane pro 53.6 41 0.00088 29.6 5.9 56 408-469 59-114 (201)
245 TIGR02655 circ_KaiC circadian 53.3 30 0.00065 35.6 6.0 44 7-51 265-308 (484)
246 COG2109 BtuR ATP:corrinoid ade 53.3 1.5E+02 0.0033 26.1 9.2 98 8-128 31-133 (198)
247 cd01124 KaiC KaiC is a circadi 53.1 35 0.00076 29.5 5.8 43 8-51 2-44 (187)
248 TIGR02852 spore_dpaB dipicolin 52.7 23 0.00049 31.2 4.3 44 6-50 1-44 (187)
249 TIGR00416 sms DNA repair prote 52.7 40 0.00088 34.3 6.8 42 8-50 97-138 (454)
250 TIGR00725 conserved hypothetic 52.0 78 0.0017 27.0 7.4 100 250-376 21-124 (159)
251 PRK11199 tyrA bifunctional cho 51.6 1E+02 0.0022 30.5 9.3 33 5-43 98-131 (374)
252 PRK03372 ppnK inorganic polyph 51.5 27 0.00058 33.5 4.9 53 348-420 73-129 (306)
253 PRK01185 ppnK inorganic polyph 51.1 27 0.00059 32.7 4.9 53 348-420 53-106 (271)
254 TIGR01283 nifE nitrogenase mol 51.1 1.4E+02 0.003 30.5 10.4 35 100-144 385-419 (456)
255 PRK07773 replicative DNA helic 50.9 74 0.0016 35.6 8.9 44 8-51 220-263 (886)
256 PRK06276 acetolactate synthase 50.7 89 0.0019 33.0 9.3 27 348-374 64-96 (586)
257 TIGR02015 BchY chlorophyllide 50.6 1.1E+02 0.0025 30.7 9.6 31 7-43 287-317 (422)
258 TIGR00665 DnaB replicative DNA 50.5 86 0.0019 31.7 8.8 44 8-51 198-241 (434)
259 PF08323 Glyco_transf_5: Starc 50.3 71 0.0015 29.4 7.5 23 21-44 21-43 (245)
260 PRK08322 acetolactate synthase 50.2 84 0.0018 32.9 9.0 27 348-374 64-96 (547)
261 TIGR03880 KaiC_arch_3 KaiC dom 49.8 48 0.001 29.9 6.3 44 7-51 18-61 (224)
262 PRK05636 replicative DNA helic 49.7 45 0.00097 34.5 6.6 42 8-50 268-310 (505)
263 PF06792 UPF0261: Uncharacteri 49.5 1.4E+02 0.0029 29.8 9.4 98 261-378 184-281 (403)
264 PRK11823 DNA repair protein Ra 49.3 39 0.00084 34.4 6.0 42 8-50 83-124 (446)
265 PRK14075 pnk inorganic polypho 48.9 34 0.00074 31.8 5.1 53 348-420 42-95 (256)
266 PRK08155 acetolactate synthase 48.3 1.6E+02 0.0035 31.0 10.7 27 348-374 77-109 (564)
267 KOG0853 Glycosyltransferase [C 47.8 12 0.00025 38.1 2.0 59 353-420 376-434 (495)
268 PRK03378 ppnK inorganic polyph 47.7 29 0.00063 33.0 4.6 53 348-420 64-120 (292)
269 TIGR01501 MthylAspMutase methy 47.7 47 0.001 27.4 5.2 43 6-49 2-44 (134)
270 PRK03501 ppnK inorganic polyph 47.7 36 0.00079 31.8 5.1 54 348-420 40-98 (264)
271 KOG3339 Predicted glycosyltran 46.9 66 0.0014 28.1 5.9 35 9-43 41-76 (211)
272 PF09001 DUF1890: Domain of un 46.8 26 0.00056 28.8 3.4 33 19-52 13-45 (139)
273 PRK08199 thiamine pyrophosphat 46.8 1.6E+02 0.0034 31.0 10.3 26 348-373 72-103 (557)
274 PF01210 NAD_Gly3P_dh_N: NAD-d 46.6 19 0.00041 30.6 2.9 32 7-44 1-32 (157)
275 PRK00346 surE 5'(3')-nucleotid 46.3 1.2E+02 0.0026 28.1 8.2 37 7-46 2-38 (250)
276 PRK14478 nitrogenase molybdenu 46.3 1.5E+02 0.0033 30.4 9.9 34 101-144 384-417 (475)
277 TIGR00460 fmt methionyl-tRNA f 46.2 58 0.0013 31.3 6.4 31 7-43 2-32 (313)
278 COG0438 RfaG Glycosyltransfera 46.1 2.5E+02 0.0053 26.0 16.9 80 329-420 257-343 (381)
279 PF01975 SurE: Survival protei 45.8 35 0.00076 30.3 4.5 40 7-48 2-41 (196)
280 TIGR00087 surE 5'/3'-nucleotid 45.8 84 0.0018 29.0 7.1 103 18-145 12-127 (244)
281 PRK13011 formyltetrahydrofolat 45.2 1.9E+02 0.0042 27.3 9.7 103 4-145 88-194 (286)
282 COG2099 CobK Precorrin-6x redu 45.2 1.3E+02 0.0028 27.8 7.9 102 22-144 117-228 (257)
283 PF00862 Sucrose_synth: Sucros 45.2 34 0.00074 34.8 4.7 31 117-147 401-433 (550)
284 PRK13768 GTPase; Provisional 45.0 55 0.0012 30.4 5.9 37 7-44 4-40 (253)
285 PLN02929 NADH kinase 44.7 32 0.00069 32.8 4.2 65 348-420 65-138 (301)
286 TIGR03878 thermo_KaiC_2 KaiC d 44.7 1.6E+02 0.0034 27.4 8.9 39 7-46 38-76 (259)
287 PRK12311 rpsB 30S ribosomal pr 44.4 1.3E+02 0.0028 29.1 8.3 33 117-149 152-186 (326)
288 PRK01231 ppnK inorganic polyph 43.7 43 0.00093 31.9 5.0 53 348-420 63-119 (295)
289 PF10093 DUF2331: Uncharacteri 43.6 70 0.0015 31.5 6.4 81 276-372 193-287 (374)
290 TIGR03600 phage_DnaB phage rep 43.3 59 0.0013 32.7 6.3 43 8-51 197-240 (421)
291 PRK06988 putative formyltransf 43.3 1.6E+02 0.0036 28.2 9.0 33 6-44 3-35 (312)
292 TIGR00347 bioD dethiobiotin sy 42.7 2.1E+02 0.0045 24.2 9.0 28 12-40 5-32 (166)
293 PF01012 ETF: Electron transfe 42.7 49 0.0011 28.2 4.9 105 8-144 2-120 (164)
294 TIGR00750 lao LAO/AO transport 42.4 1.6E+02 0.0035 28.0 8.8 41 5-46 34-74 (300)
295 PRK06395 phosphoribosylamine-- 42.4 1.6E+02 0.0034 29.9 9.1 31 6-42 3-33 (435)
296 cd03412 CbiK_N Anaerobic cobal 42.3 79 0.0017 25.7 5.8 37 263-299 2-40 (127)
297 COG0801 FolK 7,8-dihydro-6-hyd 42.1 54 0.0012 28.0 4.8 29 264-292 3-31 (160)
298 PRK03708 ppnK inorganic polyph 42.1 38 0.00083 31.9 4.4 28 348-375 58-88 (277)
299 PRK09620 hypothetical protein; 42.0 30 0.00065 31.6 3.6 38 5-43 3-52 (229)
300 PF07015 VirC1: VirC1 protein; 41.9 60 0.0013 29.6 5.4 42 7-49 3-45 (231)
301 TIGR02113 coaC_strep phosphopa 41.5 34 0.00074 29.8 3.7 43 6-50 1-43 (177)
302 PRK06027 purU formyltetrahydro 41.5 2.7E+02 0.0058 26.4 10.0 102 4-144 88-193 (286)
303 PRK06732 phosphopantothenate-- 41.5 26 0.00057 31.9 3.1 36 7-43 2-49 (229)
304 TIGR00708 cobA cob(I)alamin ad 41.1 2.4E+02 0.0052 24.5 10.9 35 6-41 6-40 (173)
305 PLN02935 Bifunctional NADH kin 40.9 49 0.0011 33.8 5.1 52 348-420 263-319 (508)
306 KOG2825 Putative arsenite-tran 40.7 1E+02 0.0022 28.5 6.5 47 4-51 17-64 (323)
307 PRK13982 bifunctional SbtC-lik 40.7 26 0.00057 35.7 3.2 38 6-44 257-306 (475)
308 COG1797 CobB Cobyrinic acid a, 40.5 1.1E+02 0.0024 30.7 7.3 33 7-40 2-35 (451)
309 PRK02231 ppnK inorganic polyph 40.5 44 0.00096 31.4 4.5 51 348-418 43-97 (272)
310 PF02776 TPP_enzyme_N: Thiamin 40.0 2.4E+02 0.0052 24.1 9.5 28 348-375 65-98 (172)
311 PRK05858 hypothetical protein; 40.0 2E+02 0.0044 30.0 9.9 26 349-374 69-100 (542)
312 PRK08266 hypothetical protein; 40.0 2E+02 0.0043 30.1 9.8 27 348-374 69-101 (542)
313 PRK14076 pnk inorganic polypho 39.8 43 0.00093 35.3 4.8 53 348-420 349-405 (569)
314 PRK02399 hypothetical protein; 39.4 2.8E+02 0.006 27.7 9.8 95 261-376 185-280 (406)
315 KOG0780 Signal recognition par 39.3 47 0.001 32.7 4.4 43 6-49 102-144 (483)
316 PRK05579 bifunctional phosphop 38.9 45 0.00097 33.3 4.5 46 4-51 5-50 (399)
317 PRK07819 3-hydroxybutyryl-CoA 38.8 37 0.0008 32.2 3.8 37 1-43 1-37 (286)
318 cd02065 B12-binding_like B12 b 38.8 68 0.0015 25.5 5.0 41 8-49 2-42 (125)
319 cd01715 ETF_alpha The electron 38.4 66 0.0014 27.6 5.0 42 97-145 70-114 (168)
320 PF09314 DUF1972: Domain of un 38.4 2.8E+02 0.006 24.4 12.5 57 6-66 2-63 (185)
321 PRK06276 acetolactate synthase 38.3 3.6E+02 0.0078 28.5 11.5 61 350-418 469-531 (586)
322 COG0541 Ffh Signal recognition 38.3 88 0.0019 31.3 6.2 45 5-50 100-144 (451)
323 PF02571 CbiJ: Precorrin-6x re 38.2 2E+02 0.0043 26.7 8.3 103 22-144 118-225 (249)
324 PRK06882 acetolactate synthase 38.1 1.7E+02 0.0036 30.9 9.0 27 348-374 68-100 (574)
325 TIGR00421 ubiX_pad polyprenyl 38.1 41 0.0009 29.4 3.7 42 7-50 1-42 (181)
326 TIGR00640 acid_CoA_mut_C methy 37.7 88 0.0019 25.7 5.4 39 4-43 1-39 (132)
327 PF06180 CbiK: Cobalt chelatas 37.5 56 0.0012 30.5 4.6 39 263-301 2-43 (262)
328 PRK07525 sulfoacetaldehyde ace 37.3 2.4E+02 0.0053 29.8 10.0 27 348-374 69-101 (588)
329 PRK12446 undecaprenyldiphospho 37.2 1.5E+02 0.0033 28.9 8.0 32 342-373 86-120 (352)
330 TIGR01761 thiaz-red thiazoliny 37.2 2.5E+02 0.0055 27.4 9.3 62 335-396 52-120 (343)
331 PRK08978 acetolactate synthase 36.8 3.5E+02 0.0076 28.3 11.1 61 350-419 451-514 (548)
332 COG3195 Uncharacterized protei 36.7 1.8E+02 0.0039 24.9 6.9 74 358-437 88-163 (176)
333 PRK08527 acetolactate synthase 36.7 1.7E+02 0.0037 30.7 8.8 118 281-420 7-152 (563)
334 TIGR02700 flavo_MJ0208 archaeo 36.5 52 0.0011 30.1 4.3 43 8-51 2-46 (234)
335 cd03114 ArgK-like The function 36.5 2.5E+02 0.0055 23.4 9.1 35 8-43 2-36 (148)
336 PRK08229 2-dehydropantoate 2-r 36.2 37 0.0008 33.0 3.5 40 6-51 3-42 (341)
337 PF07355 GRDB: Glycine/sarcosi 36.1 70 0.0015 31.0 5.1 44 94-144 64-117 (349)
338 COG1748 LYS9 Saccharopine dehy 36.1 2E+02 0.0044 28.6 8.4 40 6-51 2-43 (389)
339 PRK05748 replicative DNA helic 36.1 1.3E+02 0.0028 30.6 7.5 43 8-51 206-249 (448)
340 PRK09107 acetolactate synthase 36.0 3.9E+02 0.0084 28.4 11.3 122 262-418 419-542 (595)
341 PRK05234 mgsA methylglyoxal sy 36.0 2.6E+02 0.0056 23.3 9.6 97 5-144 4-112 (142)
342 cd01976 Nitrogenase_MoFe_alpha 35.9 48 0.001 33.4 4.3 36 100-145 359-394 (421)
343 PRK01372 ddl D-alanine--D-alan 35.7 3.8E+02 0.0083 25.2 10.8 39 4-43 3-45 (304)
344 PF05728 UPF0227: Uncharacteri 35.5 83 0.0018 27.7 5.2 41 100-147 47-90 (187)
345 PRK13196 pyrrolidone-carboxyla 35.2 68 0.0015 28.8 4.7 26 6-31 2-29 (211)
346 PRK07004 replicative DNA helic 34.8 1.9E+02 0.0042 29.5 8.5 43 8-51 216-259 (460)
347 PRK06270 homoserine dehydrogen 34.7 3.7E+02 0.008 26.1 10.1 58 338-396 80-149 (341)
348 cd00861 ProRS_anticodon_short 34.7 95 0.0021 23.2 4.9 36 5-41 1-38 (94)
349 PRK04328 hypothetical protein; 34.5 3.7E+02 0.008 24.7 10.3 43 7-50 25-67 (249)
350 PF05225 HTH_psq: helix-turn-h 34.5 77 0.0017 20.4 3.6 27 405-434 1-27 (45)
351 COG3140 Uncharacterized protei 34.4 95 0.0021 20.9 3.9 37 425-469 12-48 (60)
352 cd02040 NifH NifH gene encodes 34.3 65 0.0014 29.9 4.7 37 6-43 2-38 (270)
353 PRK00039 ruvC Holliday junctio 34.3 1.1E+02 0.0025 26.2 5.7 48 93-147 44-106 (164)
354 PLN02240 UDP-glucose 4-epimera 34.2 61 0.0013 31.4 4.7 36 1-41 1-36 (352)
355 TIGR00118 acolac_lg acetolacta 34.0 2.1E+02 0.0046 30.0 8.9 27 348-374 65-97 (558)
356 PRK13230 nitrogenase reductase 34.0 69 0.0015 30.1 4.8 37 6-43 2-38 (279)
357 TIGR02699 archaeo_AfpA archaeo 33.9 62 0.0013 28.1 4.0 43 8-51 2-45 (174)
358 PRK13234 nifH nitrogenase redu 33.7 75 0.0016 30.2 5.1 38 5-43 4-41 (295)
359 CHL00076 chlB photochlorophyll 33.5 61 0.0013 33.7 4.6 35 101-145 365-399 (513)
360 TIGR00639 PurN phosphoribosylg 33.5 2.4E+02 0.0053 24.8 7.9 101 6-145 1-108 (190)
361 COG2861 Uncharacterized protei 33.4 3.9E+02 0.0083 24.6 9.2 42 97-144 135-179 (250)
362 PF03641 Lysine_decarbox: Poss 33.2 90 0.002 25.6 4.8 35 340-374 47-91 (133)
363 PRK08006 replicative DNA helic 32.8 2.1E+02 0.0046 29.4 8.3 43 8-51 227-270 (471)
364 PLN02331 phosphoribosylglycina 32.7 3.2E+02 0.0069 24.5 8.5 39 101-146 69-108 (207)
365 TIGR00118 acolac_lg acetolacta 32.7 5.5E+02 0.012 26.9 11.8 62 350-419 462-525 (558)
366 PRK05784 phosphoribosylamine-- 32.4 2.9E+02 0.0064 28.4 9.3 33 6-43 1-34 (486)
367 COG1663 LpxK Tetraacyldisaccha 32.3 1.3E+02 0.0028 29.1 6.2 32 11-43 55-86 (336)
368 PRK00923 sirohydrochlorin coba 32.2 2.7E+02 0.0058 22.4 7.6 28 262-289 2-29 (126)
369 PRK08978 acetolactate synthase 32.0 2E+02 0.0043 30.1 8.3 27 348-374 64-96 (548)
370 TIGR01278 DPOR_BchB light-inde 31.8 71 0.0015 33.1 4.9 26 117-145 364-389 (511)
371 cd07025 Peptidase_S66 LD-Carbo 31.7 1E+02 0.0022 29.1 5.5 74 275-376 46-121 (282)
372 PRK02910 light-independent pro 31.7 74 0.0016 33.1 5.0 35 101-145 353-387 (519)
373 CHL00072 chlL photochlorophyll 31.5 80 0.0017 29.9 4.8 36 7-43 2-37 (290)
374 PRK05562 precorrin-2 dehydroge 31.4 3.5E+02 0.0077 24.5 8.6 149 255-438 20-178 (223)
375 cd02034 CooC The accessory pro 31.4 99 0.0022 24.7 4.6 37 7-44 1-37 (116)
376 cd03466 Nitrogenase_NifN_2 Nit 31.3 74 0.0016 32.2 4.8 35 100-144 362-396 (429)
377 COG0287 TyrA Prephenate dehydr 31.2 1.6E+02 0.0035 27.7 6.7 41 5-51 3-43 (279)
378 cd01141 TroA_d Periplasmic bin 31.2 69 0.0015 27.7 4.1 29 117-145 69-99 (186)
379 PRK13195 pyrrolidone-carboxyla 31.2 79 0.0017 28.7 4.4 25 7-31 3-29 (222)
380 PRK08617 acetolactate synthase 31.1 3.2E+02 0.007 28.6 9.7 27 348-374 68-100 (552)
381 COG4394 Uncharacterized protei 30.5 4.8E+02 0.01 24.8 12.9 41 328-371 237-280 (370)
382 TIGR00345 arsA arsenite-activa 30.5 1.8E+02 0.0038 27.5 6.9 26 23-49 3-28 (284)
383 PRK06048 acetolactate synthase 30.5 2.4E+02 0.0053 29.6 8.7 27 348-374 71-103 (561)
384 PF07991 IlvN: Acetohydroxy ac 30.4 71 0.0015 27.3 3.7 49 5-64 4-54 (165)
385 PRK06725 acetolactate synthase 30.3 2.5E+02 0.0053 29.7 8.6 118 281-420 19-163 (570)
386 COG2159 Predicted metal-depend 30.2 2.1E+02 0.0046 27.2 7.4 52 250-301 116-167 (293)
387 COG0041 PurE Phosphoribosylcar 30.2 3.4E+02 0.0074 23.0 11.8 142 264-441 4-152 (162)
388 TIGR00521 coaBC_dfp phosphopan 30.2 69 0.0015 31.9 4.2 45 5-51 3-47 (390)
389 PRK13197 pyrrolidone-carboxyla 30.0 98 0.0021 27.9 4.9 26 6-31 2-29 (215)
390 PF00448 SRP54: SRP54-type pro 29.9 76 0.0017 28.1 4.1 41 6-47 2-42 (196)
391 PF01470 Peptidase_C15: Pyrogl 29.9 65 0.0014 28.7 3.7 26 6-31 1-28 (202)
392 COG4088 Predicted nucleotide k 29.8 66 0.0014 28.9 3.5 35 7-42 3-37 (261)
393 PRK08979 acetolactate synthase 29.8 2.9E+02 0.0062 29.1 9.1 27 348-374 68-100 (572)
394 COG0299 PurN Folate-dependent 29.7 1.8E+02 0.0039 25.7 6.1 105 277-415 65-171 (200)
395 PRK09302 circadian clock prote 29.5 82 0.0018 32.6 4.9 44 7-51 275-318 (509)
396 TIGR02482 PFKA_ATP 6-phosphofr 29.5 57 0.0012 31.2 3.4 37 342-378 86-126 (301)
397 COG2086 FixA Electron transfer 29.5 1E+02 0.0022 28.8 4.9 39 99-144 100-144 (260)
398 PF06564 YhjQ: YhjQ protein; 29.2 96 0.0021 28.6 4.7 37 6-43 2-39 (243)
399 COG1763 MobB Molybdopterin-gua 29.2 73 0.0016 27.3 3.6 37 8-45 5-41 (161)
400 PF10083 DUF2321: Uncharacteri 29.2 1.6E+02 0.0036 24.8 5.5 75 365-461 73-148 (158)
401 cd01981 Pchlide_reductase_B Pc 29.1 84 0.0018 31.7 4.8 33 102-144 362-394 (430)
402 cd02010 TPP_ALS Thiamine pyrop 29.0 3.8E+02 0.0081 23.1 10.0 60 350-419 98-159 (177)
403 COG0503 Apt Adenine/guanine ph 29.0 1.3E+02 0.0029 26.1 5.4 37 101-144 44-82 (179)
404 cd01965 Nitrogenase_MoFe_beta_ 28.9 82 0.0018 31.8 4.7 35 100-144 361-395 (428)
405 cd07062 Peptidase_S66_mccF_lik 28.9 1.1E+02 0.0024 29.3 5.3 73 276-376 51-125 (308)
406 cd01421 IMPCH Inosine monophos 28.9 2E+02 0.0044 25.3 6.3 38 20-65 11-48 (187)
407 PRK06466 acetolactate synthase 28.8 3.2E+02 0.0069 28.8 9.2 27 348-374 68-100 (574)
408 cd01714 ETF_beta The electron 28.7 1E+02 0.0023 27.4 4.8 41 97-144 95-141 (202)
409 PRK10637 cysG siroheme synthas 28.7 6.3E+02 0.014 25.7 11.0 147 261-440 12-168 (457)
410 PRK07979 acetolactate synthase 28.7 3.2E+02 0.0069 28.8 9.2 27 348-374 68-100 (574)
411 PRK06546 pyruvate dehydrogenas 28.4 6.6E+02 0.014 26.5 11.5 61 350-419 458-519 (578)
412 PF01695 IstB_IS21: IstB-like 28.2 72 0.0016 27.7 3.6 45 5-50 47-91 (178)
413 PRK09219 xanthine phosphoribos 28.1 1.5E+02 0.0032 26.2 5.5 28 117-144 50-79 (189)
414 PF00282 Pyridoxal_deC: Pyrido 28.1 1.4E+02 0.003 29.6 5.9 70 348-419 104-191 (373)
415 PF02702 KdpD: Osmosensitive K 28.1 93 0.002 27.7 4.1 39 5-44 5-43 (211)
416 TIGR00147 lipid kinase, YegS/R 28.0 2.2E+02 0.0048 26.8 7.2 28 348-375 58-91 (293)
417 TIGR01504 glyox_carbo_lig glyo 27.9 4.9E+02 0.011 27.6 10.4 62 350-418 468-539 (588)
418 PLN02727 NAD kinase 27.9 96 0.0021 34.3 5.0 53 348-420 744-800 (986)
419 TIGR02720 pyruv_oxi_spxB pyruv 27.6 3.5E+02 0.0075 28.6 9.2 120 281-420 3-149 (575)
420 PRK08266 hypothetical protein; 27.6 7.2E+02 0.016 25.9 11.8 61 350-419 452-514 (542)
421 COG0143 MetG Methionyl-tRNA sy 27.5 1E+02 0.0023 32.2 5.1 39 5-44 4-52 (558)
422 PRK00771 signal recognition pa 27.5 1.2E+02 0.0025 30.8 5.4 42 5-47 95-136 (437)
423 COG0205 PfkA 6-phosphofructoki 27.5 5.1E+02 0.011 25.3 9.5 36 5-41 2-39 (347)
424 PRK06522 2-dehydropantoate 2-r 27.4 83 0.0018 29.8 4.3 39 7-51 2-41 (304)
425 cd01980 Chlide_reductase_Y Chl 27.4 95 0.0021 31.2 4.8 25 117-144 350-374 (416)
426 TIGR03877 thermo_KaiC_1 KaiC d 27.3 99 0.0022 28.2 4.6 42 7-49 23-64 (237)
427 PF05693 Glycogen_syn: Glycoge 27.2 77 0.0017 33.3 4.0 72 359-437 485-566 (633)
428 PRK08979 acetolactate synthase 27.2 7.2E+02 0.016 26.1 11.6 60 350-418 471-533 (572)
429 cd03784 GT1_Gtf_like This fami 27.2 3.7E+02 0.008 26.5 9.0 35 264-300 3-37 (401)
430 COG1348 NifH Nitrogenase subun 27.2 1.3E+02 0.0028 27.6 4.9 41 6-47 2-42 (278)
431 cd02032 Bchl_like This family 27.2 96 0.0021 28.8 4.5 36 7-43 2-37 (267)
432 PRK09124 pyruvate dehydrogenas 27.2 7.2E+02 0.016 26.1 11.6 60 350-418 458-518 (574)
433 PF06745 KaiC: KaiC; InterPro 27.1 15 0.00033 33.2 -0.9 44 7-51 21-65 (226)
434 KOG0081 GTPase Rab27, small G 27.1 1.7E+02 0.0037 24.9 5.3 47 101-149 108-166 (219)
435 TIGR01281 DPOR_bchL light-inde 26.9 1E+02 0.0022 28.7 4.6 36 7-43 2-37 (268)
436 PLN02293 adenine phosphoribosy 26.8 1.8E+02 0.0039 25.6 5.8 42 96-144 48-91 (187)
437 PRK06719 precorrin-2 dehydroge 26.8 1.2E+02 0.0026 25.7 4.7 33 5-43 13-45 (157)
438 PRK06457 pyruvate dehydrogenas 26.8 2.8E+02 0.0062 29.0 8.4 27 348-374 65-97 (549)
439 TIGR00877 purD phosphoribosyla 26.7 2.8E+02 0.0061 27.8 8.1 33 6-44 1-33 (423)
440 KOG3062 RNA polymerase II elon 26.7 1.2E+02 0.0026 27.6 4.6 34 7-41 3-37 (281)
441 cd02013 TPP_Xsc_like Thiamine 26.7 4.4E+02 0.0095 23.1 11.7 60 350-418 103-164 (196)
442 PRK08155 acetolactate synthase 26.5 7.7E+02 0.017 25.9 12.5 62 350-419 469-532 (564)
443 TIGR02329 propionate_PrpR prop 26.4 4.1E+02 0.009 27.7 9.3 118 16-147 36-172 (526)
444 TIGR00173 menD 2-succinyl-5-en 26.4 1.1E+02 0.0024 30.9 5.1 26 348-373 64-95 (432)
445 TIGR03457 sulphoacet_xsc sulfo 26.4 3E+02 0.0066 29.0 8.6 117 281-420 6-150 (579)
446 PRK07282 acetolactate synthase 26.3 2.7E+02 0.0059 29.3 8.2 27 348-374 74-106 (566)
447 COG0859 RfaF ADP-heptose:LPS h 26.0 6E+02 0.013 24.5 10.3 45 6-51 176-225 (334)
448 PRK12724 flagellar biosynthesi 26.0 1.4E+02 0.0031 30.0 5.5 41 7-48 225-266 (432)
449 PRK06048 acetolactate synthase 25.9 7.8E+02 0.017 25.8 12.6 61 350-419 464-527 (561)
450 PF01380 SIS: SIS domain SIS d 25.9 1.6E+02 0.0035 23.4 5.2 42 9-51 56-97 (131)
451 PRK07789 acetolactate synthase 25.8 6.9E+02 0.015 26.6 11.1 63 350-419 497-564 (612)
452 PRK06466 acetolactate synthase 25.8 7.1E+02 0.015 26.2 11.2 121 264-419 414-536 (574)
453 PLN02695 GDP-D-mannose-3',5'-e 25.8 81 0.0018 31.1 3.9 37 1-42 17-53 (370)
454 TIGR00064 ftsY signal recognit 25.8 1.4E+02 0.003 28.1 5.2 38 7-45 74-111 (272)
455 PRK12815 carB carbamoyl phosph 25.7 6.8E+02 0.015 28.9 11.6 39 5-44 7-51 (1068)
456 COG2230 Cfa Cyclopropane fatty 25.7 36 0.00078 32.0 1.3 39 354-393 80-121 (283)
457 PF01497 Peripla_BP_2: Peripla 25.7 1E+02 0.0022 27.8 4.3 38 104-148 54-93 (238)
458 PRK13982 bifunctional SbtC-lik 25.7 99 0.0021 31.6 4.5 45 5-51 70-114 (475)
459 cd01974 Nitrogenase_MoFe_beta 25.6 1.1E+02 0.0024 30.9 4.9 25 117-144 377-401 (435)
460 COG0299 PurN Folate-dependent 25.6 3.9E+02 0.0084 23.7 7.4 104 6-144 1-107 (200)
461 PRK12921 2-dehydropantoate 2-r 25.6 72 0.0016 30.3 3.4 39 7-51 2-40 (305)
462 PRK13059 putative lipid kinase 25.5 2.7E+02 0.0059 26.4 7.3 28 348-375 57-90 (295)
463 PF14626 RNase_Zc3h12a_2: Zc3h 25.4 76 0.0017 25.4 2.8 32 19-51 9-40 (122)
464 CHL00099 ilvB acetohydroxyacid 25.4 6.5E+02 0.014 26.6 10.8 62 350-418 480-543 (585)
465 TIGR02195 heptsyl_trn_II lipop 25.4 6E+02 0.013 24.3 10.5 44 6-50 175-223 (334)
466 TIGR01007 eps_fam capsular exo 25.3 1.5E+02 0.0033 26.0 5.3 39 6-45 18-57 (204)
467 cd02006 TPP_Gcl Thiamine pyrop 25.0 4.8E+02 0.01 23.0 10.9 62 350-418 107-178 (202)
468 PRK08611 pyruvate oxidase; Pro 25.0 4.5E+02 0.0097 27.7 9.5 120 281-420 8-154 (576)
469 PRK11914 diacylglycerol kinase 24.9 2.1E+02 0.0046 27.2 6.6 28 348-375 65-96 (306)
470 TIGR01285 nifN nitrogenase mol 24.9 1.1E+02 0.0024 31.0 4.7 34 101-144 364-397 (432)
471 PRK00885 phosphoribosylamine-- 24.9 3.1E+02 0.0068 27.4 8.0 30 6-41 1-31 (420)
472 PRK04761 ppnK inorganic polyph 24.8 64 0.0014 29.8 2.7 27 348-374 26-56 (246)
473 PRK14619 NAD(P)H-dependent gly 24.7 80 0.0017 30.2 3.6 34 4-43 3-36 (308)
474 PRK13604 luxD acyl transferase 24.6 1.4E+02 0.003 28.6 5.0 36 5-41 36-71 (307)
475 PF06506 PrpR_N: Propionate ca 24.6 82 0.0018 27.3 3.3 120 16-149 16-154 (176)
476 COG2099 CobK Precorrin-6x redu 24.5 1.7E+02 0.0036 27.1 5.2 39 99-144 55-99 (257)
477 COG3340 PepE Peptidase E [Amin 24.5 5.3E+02 0.011 23.3 8.4 44 251-295 23-66 (224)
478 TIGR01917 gly_red_sel_B glycin 24.4 1.3E+02 0.0028 30.0 4.8 44 95-145 61-114 (431)
479 TIGR01918 various_sel_PB selen 24.4 1.3E+02 0.0028 30.0 4.8 44 95-145 61-114 (431)
480 PLN02735 carbamoyl-phosphate s 24.4 6.1E+02 0.013 29.3 10.8 39 5-44 23-67 (1102)
481 PF02374 ArsA_ATPase: Anion-tr 24.4 1.4E+02 0.003 28.6 5.1 44 7-51 2-46 (305)
482 cd02015 TPP_AHAS Thiamine pyro 24.3 4.7E+02 0.01 22.6 11.1 62 350-419 100-163 (186)
483 PRK09259 putative oxalyl-CoA d 24.2 3.7E+02 0.0081 28.3 8.7 27 348-374 73-105 (569)
484 PRK07979 acetolactate synthase 24.1 8.3E+02 0.018 25.7 11.3 120 263-418 411-533 (574)
485 PRK13235 nifH nitrogenase redu 23.8 1.2E+02 0.0026 28.3 4.6 35 7-42 3-37 (274)
486 PF00289 CPSase_L_chain: Carba 23.8 1.3E+02 0.0029 23.8 4.0 69 278-363 12-88 (110)
487 PRK14974 cell division protein 23.7 1.6E+02 0.0035 28.7 5.3 41 5-46 140-180 (336)
488 cd01983 Fer4_NifH The Fer4_Nif 23.6 1.7E+02 0.0037 21.4 4.6 33 8-41 2-34 (99)
489 PF13167 GTP-bdg_N: GTP-bindin 23.5 2.2E+02 0.0048 21.9 5.0 39 97-142 44-84 (95)
490 PF01408 GFO_IDH_MocA: Oxidore 23.5 2.1E+02 0.0045 22.4 5.3 41 335-375 50-95 (120)
491 TIGR02483 PFK_mixed phosphofru 23.4 86 0.0019 30.3 3.4 36 343-378 90-128 (324)
492 COG0300 DltE Short-chain dehyd 23.4 1.4E+02 0.0029 28.0 4.6 37 1-41 1-37 (265)
493 TIGR01286 nifK nitrogenase mol 23.4 1.3E+02 0.0028 31.2 4.9 25 117-144 437-461 (515)
494 PRK00994 F420-dependent methyl 23.3 1.6E+02 0.0035 26.8 4.8 43 100-149 50-98 (277)
495 TIGR01425 SRP54_euk signal rec 23.2 1.4E+02 0.003 30.2 4.9 40 7-47 102-141 (429)
496 PRK14106 murD UDP-N-acetylmura 23.1 1E+02 0.0023 31.2 4.2 37 1-43 1-37 (450)
497 cd00763 Bacterial_PFK Phosphof 23.1 88 0.0019 30.2 3.4 37 342-378 87-126 (317)
498 PRK07524 hypothetical protein; 23.1 5.7E+02 0.012 26.6 9.8 120 281-420 6-153 (535)
499 PRK13185 chlL protochlorophyll 22.9 1.4E+02 0.003 27.8 4.7 36 7-43 4-39 (270)
500 PF02572 CobA_CobO_BtuR: ATP:c 22.8 3.4E+02 0.0073 23.5 6.6 36 6-42 4-39 (172)
No 1
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=8.3e-62 Score=486.82 Aligned_cols=436 Identities=35% Similarity=0.627 Sum_probs=338.9
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhhcCCCCCCceEEeccCCCCCCCCCCCCCCCCCC
Q 043168 4 RKENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSL 83 (473)
Q Consensus 4 ~~~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~ip~~~~~~~l~~~~~~~~~~ 83 (473)
.+.||+++|+|++||++|++.||+.|+. +|++|||++++.+...+.......+++++..+|+|. .+++|.+.....+.
T Consensus 8 ~~~HVvl~PfpaqGHi~P~l~LAk~La~-~G~~VTfv~T~~n~~~~~~~~~~~~~i~~~~lp~P~-~~~lPdG~~~~~~~ 85 (477)
T PLN02863 8 AGTHVLVFPFPAQGHMIPLLDLTHRLAL-RGLTITVLVTPKNLPFLNPLLSKHPSIETLVLPFPS-HPSIPSGVENVKDL 85 (477)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHh-CCCEEEEEeCCCcHHHHhhhcccCCCeeEEeCCCCC-cCCCCCCCcChhhc
Confidence 5679999999999999999999999999 999999999999888776542211468888888763 45777766544433
Q ss_pred CCCCchHHHHHHhhhhHHHHHHHhhhhhccCCCCCeEEEeCCCcchHHHHHHHhCCcEEEEccccHHHHHHHHhhhhcCC
Q 043168 84 PFHLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALFVGGGSFGFACFYSLWLNLP 163 (473)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p 163 (473)
+...+..+......+.+.+.+++++.. . +|++||+|.+++|+..+|+++|||++.|++++++.+..+.+.+...+
T Consensus 86 ~~~~~~~~~~a~~~~~~~~~~~l~~~~----~-~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~~~ 160 (477)
T PLN02863 86 PPSGFPLMIHALGELYAPLLSWFRSHP----S-PPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWREMP 160 (477)
T ss_pred chhhHHHHHHHHHHhHHHHHHHHHhCC----C-CCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhccc
Confidence 333334555666677778888887641 1 67999999999999999999999999999999999888776654433
Q ss_pred CCC-----CCCc---ccCCCCCCcccchhhhhhhhhccCCCChHHHHHHHHhhhcccCceEEecchhhhccc--------
Q 043168 164 HRD-----SDEF---LLPDFPEASRIHVTQMTKFLRLADGSDSLSVFFQKVLPQWMNADGILFNTVEELDKI-------- 227 (473)
Q Consensus 164 ~~~-----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~-------- 227 (473)
... .+.. .+|+++. ++..+++.+++.....+.....+.+.......++.+++|||.+||+.
T Consensus 161 ~~~~~~~~~~~~~~~~iPg~~~---~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~ 237 (477)
T PLN02863 161 TKINPDDQNEILSFSKIPNCPK---YPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHLKKE 237 (477)
T ss_pred ccccccccccccccCCCCCCCC---cChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHHHhh
Confidence 211 1112 3566655 77777776665332223333444344344556788999999999876
Q ss_pred --------cCccccCCCCCC---CCCCCCCCCchhhhhhhccCCCCceEEEEecCcccCCHHHHHHHHHHHHhCCCcEEE
Q 043168 228 --------VGPLLLSTGSRA---GAGKEYGISTESCKNWLDTKPCNSVIYVSFGSQNTIAASQMMQLAMALEACGKNFIW 296 (473)
Q Consensus 228 --------vGp~~~~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~ 296 (473)
|||+.+...... ..+......++++.+||+.++++++|||||||....+.+++++++.+|+..+++|||
T Consensus 238 ~~~~~v~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~flw 317 (477)
T PLN02863 238 LGHDRVWAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFIW 317 (477)
T ss_pred cCCCCeEEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCCcEEE
Confidence 788875321000 000011112467999999998889999999999999999999999999999999999
Q ss_pred EEcCCCCCCCccchhcccCCchhHHHhhccCCCCeEEecccChHHhhcccccceeeeccChhhHHHHHhcCCCEEecccc
Q 043168 297 VVKPPLGFDLNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVEILSHKSISAFLSHCGWNSVLEALSHGVPIIGWPLA 376 (473)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~i~~P~~ 376 (473)
+++.... .+... ..+|.+|.++.. ..|+++.+|+||.+||+|++|++|||||||||++||+++|||||++|++
T Consensus 318 ~~~~~~~--~~~~~---~~lp~~~~~r~~--~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~ 390 (477)
T PLN02863 318 CVKEPVN--EESDY---SNIPSGFEDRVA--GRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMA 390 (477)
T ss_pred EECCCcc--cccch---hhCCHHHHHHhc--cCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCcc
Confidence 9975320 00011 238889988887 8899999999999999999999999999999999999999999999999
Q ss_pred cchhhhHHHHHHHHcceEEEecccCCccCHHHHHHHHHHHHc-CChhhHHHHHHHHHHHHHHHHhhhhhhccCCChHHHH
Q 043168 377 AEQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAKFELVMN-ETEKGMDLRKKASEVEMIIKNAVRNEEKFKGSSVKAM 455 (473)
Q Consensus 377 ~DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ai~~~l~-~~~~~~~~~~~a~~~~~~~~~a~~~~~~~~g~~~~~~ 455 (473)
.||+.||+++++.||+|+++..+.....+.+++.++|+++|. ++ .||+||+++++.+++|+ .+|||+.+++
T Consensus 391 ~DQ~~na~~v~~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m~~~~----~~r~~a~~l~e~a~~Av----~~gGSS~~~l 462 (477)
T PLN02863 391 ADQFVNASLLVDELKVAVRVCEGADTVPDSDELARVFMESVSENQ----VERERAKELRRAALDAI----KERGSSVKDL 462 (477)
T ss_pred ccchhhHHHHHHhhceeEEeccCCCCCcCHHHHHHHHHHHhhccH----HHHHHHHHHHHHHHHHh----ccCCcHHHHH
Confidence 999999999887789999996422234689999999999993 44 89999999999999999 9999999999
Q ss_pred HHHHHHHHH
Q 043168 456 EQFLDAALM 464 (473)
Q Consensus 456 ~~~~~~~~~ 464 (473)
++|++++..
T Consensus 463 ~~~v~~i~~ 471 (477)
T PLN02863 463 DGFVKHVVE 471 (477)
T ss_pred HHHHHHHHH
Confidence 999999875
No 2
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=5.6e-61 Score=485.04 Aligned_cols=440 Identities=36% Similarity=0.668 Sum_probs=332.1
Q ss_pred CCCCCceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhhcCCC----CC--CceEEeccCCCCCCCCC
Q 043168 1 MAQRKENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQ----NS--SIHLREIPFDGIAHDLP 74 (473)
Q Consensus 1 m~~~~~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~----~~--~~~~~~ip~~~~~~~l~ 74 (473)
|..++.||+++|+|++||++|++.||+.|+. +||+|||++++.+...+++.+.. .+ .+.+..++++...++++
T Consensus 1 ~~~~~~hVvlvp~pa~GHi~P~L~LAk~L~~-rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP 79 (482)
T PLN03007 1 MNHEKLHILFFPFMAHGHMIPTLDMAKLFSS-RGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLP 79 (482)
T ss_pred CCCCCcEEEEECCCccccHHHHHHHHHHHHh-CCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCC
Confidence 7778889999999999999999999999999 99999999999988777665431 01 23555566654334666
Q ss_pred CCCCCCCCCC---C----CCchHHHHHHhhhhHHHHHHHhhhhhccCCCCCeEEEeCCCcchHHHHHHHhCCcEEEEccc
Q 043168 75 PCTENSDSLP---F----HLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALFVGG 147 (473)
Q Consensus 75 ~~~~~~~~~~---~----~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~~~~ 147 (473)
.+.......+ . .....+......+.+.+.+++++. +||+||+|.+++|+..+|+++|||++.|+++
T Consensus 80 ~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-------~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~ 152 (482)
T PLN03007 80 EGCENVDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLETT-------RPDCLVADMFFPWATEAAEKFGVPRLVFHGT 152 (482)
T ss_pred CCcccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhcC-------CCCEEEECCcchhHHHHHHHhCCCeEEeecc
Confidence 5533322110 1 112233444466777778888766 8999999999999999999999999999999
Q ss_pred cHHHHHHHHhhhhcCCCCC----CCCcccCCCCCCcccchhhhhhhhhccCCCChHHHHHHHHhhhcccCceEEecchhh
Q 043168 148 GSFGFACFYSLWLNLPHRD----SDEFLLPDFPEASRIHVTQMTKFLRLADGSDSLSVFFQKVLPQWMNADGILFNTVEE 223 (473)
Q Consensus 148 ~~~~~~~~~~~~~~~p~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 223 (473)
+++....+.+.....+... .+...+|++|..+.+....++. ......+..++....+...+++.+++|++.+
T Consensus 153 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~p~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~ 228 (482)
T PLN03007 153 GYFSLCASYCIRVHKPQKKVASSSEPFVIPDLPGDIVITEEQIND----ADEESPMGKFMKEVRESEVKSFGVLVNSFYE 228 (482)
T ss_pred cHHHHHHHHHHHhcccccccCCCCceeeCCCCCCccccCHHhcCC----CCCchhHHHHHHHHHhhcccCCEEEEECHHH
Confidence 8877766543332222111 1123467776433333333332 1122334455556666677889999999999
Q ss_pred hccc---------------cCccccCCCCC--C-CCCCCCCCCchhhhhhhccCCCCceEEEEecCcccCCHHHHHHHHH
Q 043168 224 LDKI---------------VGPLLLSTGSR--A-GAGKEYGISTESCKNWLDTKPCNSVIYVSFGSQNTIAASQMMQLAM 285 (473)
Q Consensus 224 l~~~---------------vGp~~~~~~~~--~-~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~ 285 (473)
||.. |||+....... . ......+..+.++.+||++++++++|||||||......+++.+++.
T Consensus 229 le~~~~~~~~~~~~~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~ 308 (482)
T PLN03007 229 LESAYADFYKSFVAKRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAA 308 (482)
T ss_pred HHHHHHHHHHhccCCCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHH
Confidence 8876 88875432110 0 0011111234679999999988999999999998888899999999
Q ss_pred HHHhCCCcEEEEEcCCCCCCCccchhcccCCchhHHHhhccCCCCeEEecccChHHhhcccccceeeeccChhhHHHHHh
Q 043168 286 ALEACGKNFIWVVKPPLGFDLNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVEILSHKSISAFLSHCGWNSVLEALS 365 (473)
Q Consensus 286 al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~~~I~HgG~gs~~eal~ 365 (473)
+|+.++++|||+++... +..... ..+|++|.++.. +.|+++.+|+||.+||+|+++++|||||||||++||++
T Consensus 309 ~l~~~~~~flw~~~~~~----~~~~~~-~~lp~~~~~r~~--~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~ 381 (482)
T PLN03007 309 GLEGSGQNFIWVVRKNE----NQGEKE-EWLPEGFEERTK--GKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVA 381 (482)
T ss_pred HHHHCCCCEEEEEecCC----cccchh-hcCCHHHHHHhc--cCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHH
Confidence 99999999999998642 000011 238899999887 89999999999999999999999999999999999999
Q ss_pred cCCCEEecccccchhhhHHHHHHHHcceEEEecc-----cCCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHh
Q 043168 366 HGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARG-----MNCEVSKENLSAKFELVMNETEKGMDLRKKASEVEMIIKNA 440 (473)
Q Consensus 366 ~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~-----~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~~~~~~~~a 440 (473)
+|||||++|++.||+.||+++++.|++|+.+..+ ....++.++|.++|+++|.++ +++.||++|+++++.+++|
T Consensus 382 ~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~-~~~~~r~~a~~~~~~a~~a 460 (482)
T PLN03007 382 AGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGE-EAEERRLRAKKLAEMAKAA 460 (482)
T ss_pred cCCCeeeccchhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998777777766321 114689999999999999987 7889999999999999999
Q ss_pred hhhhhccCCChHHHHHHHHHHHHH
Q 043168 441 VRNEEKFKGSSVKAMEQFLDAALM 464 (473)
Q Consensus 441 ~~~~~~~~g~~~~~~~~~~~~~~~ 464 (473)
+ .+|||+++++++|++++..
T Consensus 461 ~----~~gGsS~~~l~~~v~~~~~ 480 (482)
T PLN03007 461 V----EEGGSSFNDLNKFMEELNS 480 (482)
T ss_pred H----hCCCcHHHHHHHHHHHHHh
Confidence 9 9999999999999998864
No 3
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=2.1e-60 Score=471.25 Aligned_cols=422 Identities=24% Similarity=0.447 Sum_probs=325.7
Q ss_pred CCCCCceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhhcCCCCCCceEEeccCCCCCCCCCCCC-CC
Q 043168 1 MAQRKENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCT-EN 79 (473)
Q Consensus 1 m~~~~~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~ip~~~~~~~l~~~~-~~ 79 (473)
|+.++.||+++|+|++||++|++.||+.|+. +|++|||++++.+...+..... ++++|..+| +++|.+. ..
T Consensus 1 ~~~~~~hvv~~P~paqGHi~P~l~lAk~La~-~G~~vT~v~t~~~~~~~~~~~~--~~i~~~~ip-----dglp~~~~~~ 72 (449)
T PLN02173 1 MEKMRGHVLAVPFPSQGHITPIRQFCKRLHS-KGFKTTHTLTTFIFNTIHLDPS--SPISIATIS-----DGYDQGGFSS 72 (449)
T ss_pred CCCCCcEEEEecCcccccHHHHHHHHHHHHc-CCCEEEEEECCchhhhcccCCC--CCEEEEEcC-----CCCCCccccc
Confidence 6767789999999999999999999999999 9999999999987665543222 468998887 3666532 21
Q ss_pred CCCCCCCCchHHHHHH-hhhhHHHHHHHhhhhhccCCCCC-eEEEeCCCcchHHHHHHHhCCcEEEEccccHHHHHHHHh
Q 043168 80 SDSLPFHLFPNFFEST-LSFKPHFRKLINGLIDEQNGHKP-VCIIADMFFAWSAEIAQEYGIFNALFVGGGSFGFACFYS 157 (473)
Q Consensus 80 ~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~p-DlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~ 157 (473)
. .....++..+ ....+.+.++++.... ++ +| ++||+|.+.+|+..+|+++|||++.+++++++.+..+.+
T Consensus 73 ~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~-~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~ 144 (449)
T PLN02173 73 A-----GSVPEYLQNFKTFGSKTVADIIRKHQS--TD-NPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYL 144 (449)
T ss_pred c-----cCHHHHHHHHHHhhhHHHHHHHHHhhc--cC-CCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHh
Confidence 1 1122444444 3667788888876421 12 45 999999999999999999999999999988777655442
Q ss_pred hhhcCCCCCCCCcccCCCCCCcccchhhhhhhhhccCCCChHHHHHHHHhhhcccCceEEecchhhhccc----------
Q 043168 158 LWLNLPHRDSDEFLLPDFPEASRIHVTQMTKFLRLADGSDSLSVFFQKVLPQWMNADGILFNTVEELDKI---------- 227 (473)
Q Consensus 158 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~---------- 227 (473)
.... .......+|++|. +..++++.++............+.+.......++.+++|||.+||+.
T Consensus 145 ~~~~---~~~~~~~~pg~p~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~ 218 (449)
T PLN02173 145 SYIN---NGSLTLPIKDLPL---LELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSKVCP 218 (449)
T ss_pred HHhc---cCCccCCCCCCCC---CChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHhcCC
Confidence 2110 0012244677775 66777777664332222333333333455677899999999999976
Q ss_pred ---cCccccCCC--CC--CCCCC--CCC--CCchhhhhhhccCCCCceEEEEecCcccCCHHHHHHHHHHHHhCCCcEEE
Q 043168 228 ---VGPLLLSTG--SR--AGAGK--EYG--ISTESCKNWLDTKPCNSVIYVSFGSQNTIAASQMMQLAMALEACGKNFIW 296 (473)
Q Consensus 228 ---vGp~~~~~~--~~--~~~~~--~~~--~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~ 296 (473)
|||+.+... .. ..... ..+ ...+++.+||++++++++|||||||....+.+++.+++.+| .+.+|+|
T Consensus 219 v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~~flW 296 (449)
T PLN02173 219 VLTIGPTVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNFSYLW 296 (449)
T ss_pred eeEEcccCchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCCCEEE
Confidence 999975310 00 00000 001 12346999999998889999999999999999999999999 6788999
Q ss_pred EEcCCCCCCCccchhcccCCchhHHHhhccCCCCeEEecccChHHhhcccccceeeeccChhhHHHHHhcCCCEEecccc
Q 043168 297 VVKPPLGFDLNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVEILSHKSISAFLSHCGWNSVLEALSHGVPIIGWPLA 376 (473)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~i~~P~~ 376 (473)
++.... . +.+|+++.++.. +.|+.+.+|+||.+||+|++|++|||||||||++||+++|||||++|++
T Consensus 297 vvr~~~---------~-~~lp~~~~~~~~--~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~ 364 (449)
T PLN02173 297 VVRASE---------E-SKLPPGFLETVD--KDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQW 364 (449)
T ss_pred EEeccc---------h-hcccchHHHhhc--CCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCch
Confidence 997431 0 237888888876 6888988999999999999999999999999999999999999999999
Q ss_pred cchhhhHHHHHHHHcceEEEeccc-CCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHhhhhhhccCCChHHHH
Q 043168 377 AEQFYNSKLLEEVIGVCVEVARGM-NCEVSKENLSAKFELVMNETEKGMDLRKKASEVEMIIKNAVRNEEKFKGSSVKAM 455 (473)
Q Consensus 377 ~DQ~~~a~~v~~~lG~G~~l~~~~-~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~~~~~~~~a~~~~~~~~g~~~~~~ 455 (473)
.||+.||+++++.||+|+.+..++ +..++.++|.++|+++|.++ +++.+|++|+++++..++|+ ++|||+.+++
T Consensus 365 ~DQ~~Na~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~-~~~~~r~~a~~~~~~a~~Av----~~gGSS~~~l 439 (449)
T PLN02173 365 TDQPMNAKYIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVMEGE-KSKEMKENAGKWRDLAVKSL----SEGGSTDINI 439 (449)
T ss_pred hcchHHHHHHHHHhCceEEEeecccCCcccHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHHHh----cCCCcHHHHH
Confidence 999999999999889999987521 12469999999999999886 67899999999999999999 9999999999
Q ss_pred HHHHHHHH
Q 043168 456 EQFLDAAL 463 (473)
Q Consensus 456 ~~~~~~~~ 463 (473)
++|++++.
T Consensus 440 ~~~v~~~~ 447 (449)
T PLN02173 440 NTFVSKIQ 447 (449)
T ss_pred HHHHHHhc
Confidence 99999864
No 4
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=4.4e-60 Score=473.31 Aligned_cols=442 Identities=33% Similarity=0.591 Sum_probs=334.3
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhhcCCC----CCCceEEeccCCCCCCCCCCCCCC
Q 043168 4 RKENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQ----NSSIHLREIPFDGIAHDLPPCTEN 79 (473)
Q Consensus 4 ~~~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~----~~~~~~~~ip~~~~~~~l~~~~~~ 79 (473)
.+.||+++|+|++||++|++.||+.|.. +|+.|||++++.+...+...... ...++|..+|+|...+++|.+.+.
T Consensus 7 ~~~Hvv~vPfpaqGHi~P~l~LAk~La~-~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~~~ 85 (491)
T PLN02534 7 KQLHFVLIPLMAQGHMIPMIDMARLLAE-RGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGCEN 85 (491)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHHHHh-CCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCccc
Confidence 3469999999999999999999999999 99999999999887666543210 023899999988555688776444
Q ss_pred CCCCCC-CCchHHHHHHhhhhHHHHHHHhhhhhccCCCCCeEEEeCCCcchHHHHHHHhCCcEEEEccccHHHHHHHHhh
Q 043168 80 SDSLPF-HLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALFVGGGSFGFACFYSL 158 (473)
Q Consensus 80 ~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~ 158 (473)
....+. .....+......+.+.+.+++++. +++|++||+|.+++|+..+|+++|||++.|++++++....+.+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~-----~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~ 160 (491)
T PLN02534 86 LDTLPSRDLLRKFYDAVDKLQQPLERFLEQA-----KPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNI 160 (491)
T ss_pred cccCCcHHHHHHHHHHHHHhHHHHHHHHHhc-----CCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHH
Confidence 333232 222344455566778888888753 11689999999999999999999999999999988877654433
Q ss_pred hhcCCCC---C-CCCcccCCCCCCcccchhhhhhhhhccCCCChHHHHHHHHhhhcccCceEEecchhhhccc-------
Q 043168 159 WLNLPHR---D-SDEFLLPDFPEASRIHVTQMTKFLRLADGSDSLSVFFQKVLPQWMNADGILFNTVEELDKI------- 227 (473)
Q Consensus 159 ~~~~p~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~------- 227 (473)
....+.. . ...+.+|+++....+...+++..+... .....+...+......++.+++|||.+||+.
T Consensus 161 ~~~~~~~~~~~~~~~~~iPg~p~~~~l~~~dlp~~~~~~---~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l~~ 237 (491)
T PLN02534 161 RLHNAHLSVSSDSEPFVVPGMPQSIEITRAQLPGAFVSL---PDLDDVRNKMREAESTAFGVVVNSFNELEHGCAEAYEK 237 (491)
T ss_pred HHhcccccCCCCCceeecCCCCccccccHHHCChhhcCc---ccHHHHHHHHHhhcccCCEEEEecHHHhhHHHHHHHHh
Confidence 2222211 1 223557777654446666666544321 1123333333333345678999999999974
Q ss_pred --------cCccccCCCCCCC---CCCCCCCCchhhhhhhccCCCCceEEEEecCcccCCHHHHHHHHHHHHhCCCcEEE
Q 043168 228 --------VGPLLLSTGSRAG---AGKEYGISTESCKNWLDTKPCNSVIYVSFGSQNTIAASQMMQLAMALEACGKNFIW 296 (473)
Q Consensus 228 --------vGp~~~~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~ 296 (473)
|||+......... .........+++..||++++++++|||||||.....++++.+++.+|+.++.+|||
T Consensus 238 ~~~~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~flW 317 (491)
T PLN02534 238 AIKKKVWCVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEASKKPFIW 317 (491)
T ss_pred hcCCcEEEECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEE
Confidence 8999753211000 00000112356999999998889999999999999999999999999999999999
Q ss_pred EEcCCCCCCCccchhcccCCchhHHHhhccCCCCeEEecccChHHhhcccccceeeeccChhhHHHHHhcCCCEEecccc
Q 043168 297 VVKPPLGFDLNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVEILSHKSISAFLSHCGWNSVLEALSHGVPIIGWPLA 376 (473)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~i~~P~~ 376 (473)
++..+.. . .+... ..+|++|.+++. +.|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|++
T Consensus 318 ~~r~~~~--~-~~~~~-~~~p~gf~~~~~--~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P~~ 391 (491)
T PLN02534 318 VIKTGEK--H-SELEE-WLVKENFEERIK--GRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPLF 391 (491)
T ss_pred EEecCcc--c-cchhh-hcCchhhHHhhc--cCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEecccc
Confidence 9974310 0 01111 136789988876 7899999999999999999999999999999999999999999999999
Q ss_pred cchhhhHHHHHHHHcceEEEecc-------cC--C-ccCHHHHHHHHHHHHcC-ChhhHHHHHHHHHHHHHHHHhhhhhh
Q 043168 377 AEQFYNSKLLEEVIGVCVEVARG-------MN--C-EVSKENLSAKFELVMNE-TEKGMDLRKKASEVEMIIKNAVRNEE 445 (473)
Q Consensus 377 ~DQ~~~a~~v~~~lG~G~~l~~~-------~~--~-~~~~~~l~~ai~~~l~~-~~~~~~~~~~a~~~~~~~~~a~~~~~ 445 (473)
.||+.||+++++.||+|+++..+ ++ . .++.++|+++|+++|.+ .++|+.+|+||+++++.+++|+
T Consensus 392 ~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~Av---- 467 (491)
T PLN02534 392 AEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARKAM---- 467 (491)
T ss_pred ccHHHHHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHh----
Confidence 99999999999999999988421 01 1 37999999999999973 2368899999999999999999
Q ss_pred ccCCChHHHHHHHHHHHHH
Q 043168 446 KFKGSSVKAMEQFLDAALM 464 (473)
Q Consensus 446 ~~~g~~~~~~~~~~~~~~~ 464 (473)
.+|||+.+++++|++++..
T Consensus 468 ~~GGSS~~nl~~fv~~i~~ 486 (491)
T PLN02534 468 ELGGSSHINLSILIQDVLK 486 (491)
T ss_pred cCCCcHHHHHHHHHHHHHH
Confidence 9999999999999999864
No 5
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=4.7e-60 Score=467.08 Aligned_cols=427 Identities=28% Similarity=0.432 Sum_probs=326.2
Q ss_pred CCCCCceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhhcCCCCCCceEEeccCCCCCCCCCCCCCCC
Q 043168 1 MAQRKENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENS 80 (473)
Q Consensus 1 m~~~~~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~ip~~~~~~~l~~~~~~~ 80 (473)
|.+.+.||+++|+|++||++|++.||+.|+. +|+.|||++++.+...+........++.+..+++| ..++++.+.+..
T Consensus 1 ~~~~~~Hvvl~P~paqGHi~P~l~LAk~La~-~g~~vT~~tt~~~~~~~~~~~~~~~~~~v~~~~~p-~~~glp~g~e~~ 78 (453)
T PLN02764 1 MGGLKFHVLMYPWFATGHMTPFLFLANKLAE-KGHTVTFLLPKKALKQLEHLNLFPHNIVFRSVTVP-HVDGLPVGTETV 78 (453)
T ss_pred CCCCCcEEEEECCcccccHHHHHHHHHHHHh-CCCEEEEEeCcchhhhhcccccCCCCceEEEEECC-CcCCCCCccccc
Confidence 7778899999999999999999999999999 99999999999887666542100013334444443 235777664443
Q ss_pred CCCCCCCchHHHHHHhhhhHHHHHHHhhhhhccCCCCCeEEEeCCCcchHHHHHHHhCCcEEEEccccHHHHHHHHhhhh
Q 043168 81 DSLPFHLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALFVGGGSFGFACFYSLWL 160 (473)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~ 160 (473)
.+.+......+......+.+.+.+++++. +||+||+|. .+|+..+|+++|||++.+++++++.+..+..
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~~~~~~l~~~-------~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~--- 147 (453)
T PLN02764 79 SEIPVTSADLLMSAMDLTRDQVEVVVRAV-------EPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV--- 147 (453)
T ss_pred ccCChhHHHHHHHHHHHhHHHHHHHHHhC-------CCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc---
Confidence 33332223445555667788899999887 899999995 8899999999999999999999887777642
Q ss_pred cCCCCCCCCcccCCCCCC-cccchhhhhhhhhcc--CCCChHHHHHHHHhhhcccCceEEecchhhhccc----------
Q 043168 161 NLPHRDSDEFLLPDFPEA-SRIHVTQMTKFLRLA--DGSDSLSVFFQKVLPQWMNADGILFNTVEELDKI---------- 227 (473)
Q Consensus 161 ~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~---------- 227 (473)
+.... ....|++|.. +.++...++.+.... ........++.........++.+++|||.+||+.
T Consensus 148 --~~~~~-~~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~~~~~~ 224 (453)
T PLN02764 148 --PGGEL-GVPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYIEKHCR 224 (453)
T ss_pred --ccccC-CCCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHHHhhcC
Confidence 11000 0123666532 123444444432211 1112334445555455677889999999999976
Q ss_pred -----cCccccCCCCCCCCCCCCCCCchhhhhhhccCCCCceEEEEecCcccCCHHHHHHHHHHHHhCCCcEEEEEcCCC
Q 043168 228 -----VGPLLLSTGSRAGAGKEYGISTESCKNWLDTKPCNSVIYVSFGSQNTIAASQMMQLAMALEACGKNFIWVVKPPL 302 (473)
Q Consensus 228 -----vGp~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~ 302 (473)
|||+.+.... .....+++.+|||++++++||||||||....+.+++.++..+|+..+.+|+|++....
T Consensus 225 ~~v~~VGPL~~~~~~-------~~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r~~~ 297 (453)
T PLN02764 225 KKVLLTGPVFPEPDK-------TRELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVKPPR 297 (453)
T ss_pred CcEEEeccCccCccc-------cccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 7888653210 0112467999999999999999999999999999999999999999999999998532
Q ss_pred CCCCccchhcccCCchhHHHhhccCCCCeEEecccChHHhhcccccceeeeccChhhHHHHHhcCCCEEecccccchhhh
Q 043168 303 GFDLNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVEILSHKSISAFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYN 382 (473)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~i~~P~~~DQ~~~ 382 (473)
+.+ +. . ..+|++|.++++ ..++++.+|+||.+||+|++|++|||||||||++||+++|||||++|+..||+.|
T Consensus 298 ~~~---~~-~-~~lp~~f~~r~~--grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~n 370 (453)
T PLN02764 298 GSS---TI-Q-EALPEGFEERVK--GRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLN 370 (453)
T ss_pred CCc---ch-h-hhCCcchHhhhc--cCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHHH
Confidence 110 11 1 348999999988 8899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcceEEEecccCCccCHHHHHHHHHHHHcCC-hhhHHHHHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHH
Q 043168 383 SKLLEEVIGVCVEVARGMNCEVSKENLSAKFELVMNET-EKGMDLRKKASEVEMIIKNAVRNEEKFKGSSVKAMEQFLDA 461 (473)
Q Consensus 383 a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ai~~~l~~~-~~~~~~~~~a~~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~ 461 (473)
|+++++.||+|+.+..++...++.++|.++|+++|+++ +.++.+|++++++++.+ .++||+.+++++|+++
T Consensus 371 a~~l~~~~g~gv~~~~~~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~--------~~~GSS~~~l~~lv~~ 442 (453)
T PLN02764 371 TRLLSDELKVSVEVAREETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETL--------ASPGLLTGYVDNFIES 442 (453)
T ss_pred HHHHHHHhceEEEeccccCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH--------HhcCCHHHHHHHHHHH
Confidence 99998777999998641112589999999999999875 46888999999999999 4578899999999999
Q ss_pred HHHh
Q 043168 462 ALMM 465 (473)
Q Consensus 462 ~~~~ 465 (473)
+...
T Consensus 443 ~~~~ 446 (453)
T PLN02764 443 LQDL 446 (453)
T ss_pred HHHh
Confidence 8753
No 6
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=1.3e-59 Score=468.14 Aligned_cols=428 Identities=27% Similarity=0.470 Sum_probs=327.4
Q ss_pred CCCCCceEEEEcCCCccCHHHHHHHHHHHH-hCCCcEEEEEcCCcchhhhhhcCCCCCCceEEeccCCCCCCCCCCCCCC
Q 043168 1 MAQRKENIVMFPLMAQGHIIPFLALALHLE-NTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTEN 79 (473)
Q Consensus 1 m~~~~~~Il~~~~~~~GHv~P~l~LA~~L~-~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~ip~~~~~~~l~~~~~~ 79 (473)
|-..+.||+++|+|++||++|++.||+.|. . +|++|||++++.+...+.......+++++..+|++. .++++....
T Consensus 1 ~~~~~pHVvl~P~paqGHi~P~l~LAk~La~~-~g~~vT~v~t~~n~~~~~~~~~~~~~i~~~~lp~p~-~~glp~~~~- 77 (481)
T PLN02992 1 MHITKPHAAMFSSPGMGHVIPVIELGKRLSAN-HGFHVTVFVLETDAASAQSKFLNSTGVDIVGLPSPD-ISGLVDPSA- 77 (481)
T ss_pred CCCCCcEEEEeCCcccchHHHHHHHHHHHHhC-CCcEEEEEeCCCchhhhhhccccCCCceEEECCCcc-ccCCCCCCc-
Confidence 555678999999999999999999999998 8 899999999998876653332211368899988763 234432110
Q ss_pred CCCCCCCCchHHHHHHhhhhHHHHHHHhhhhhccCCCCCeEEEeCCCcchHHHHHHHhCCcEEEEccccHHHHHHHHhhh
Q 043168 80 SDSLPFHLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALFVGGGSFGFACFYSLW 159 (473)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~ 159 (473)
.....+......+.+.+++++++.. . +|++||+|.+++|+..+|+++|||++.|++++++.+..+.+.+
T Consensus 78 ------~~~~~~~~~~~~~~~~~~~~l~~~~----~-~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~ 146 (481)
T PLN02992 78 ------HVVTKIGVIMREAVPTLRSKIAEMH----Q-KPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYP 146 (481)
T ss_pred ------cHHHHHHHHHHHhHHHHHHHHHhcC----C-CCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhh
Confidence 1122333444566788888887641 1 6899999999999999999999999999999988776654432
Q ss_pred hcC-CCCC-----CCCcccCCCCCCcccchhhhhhhhhccCCCChHHHHHHHHhhhcccCceEEecchhhhccc------
Q 043168 160 LNL-PHRD-----SDEFLLPDFPEASRIHVTQMTKFLRLADGSDSLSVFFQKVLPQWMNADGILFNTVEELDKI------ 227 (473)
Q Consensus 160 ~~~-p~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~------ 227 (473)
... +... .+...+|+++. ++..+++..+... .......+.+.......++.+++|||.+||..
T Consensus 147 ~~~~~~~~~~~~~~~~~~iPg~~~---l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~ 221 (481)
T PLN02992 147 TLDKDIKEEHTVQRKPLAMPGCEP---VRFEDTLDAYLVP--DEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQ 221 (481)
T ss_pred hhccccccccccCCCCcccCCCCc---cCHHHhhHhhcCC--CcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHh
Confidence 211 1000 11234666665 6666666543322 22233344444455678899999999999874
Q ss_pred ---------------cCccccCCCCCCCCCCCCCCCchhhhhhhccCCCCceEEEEecCcccCCHHHHHHHHHHHHhCCC
Q 043168 228 ---------------VGPLLLSTGSRAGAGKEYGISTESCKNWLDTKPCNSVIYVSFGSQNTIAASQMMQLAMALEACGK 292 (473)
Q Consensus 228 ---------------vGp~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~ 292 (473)
|||+.+... ....++++.+||++++++++|||||||...++.+++++++.+|+.++.
T Consensus 222 ~~~~~~~~~~~~v~~VGPl~~~~~--------~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~ 293 (481)
T PLN02992 222 DPKLLGRVARVPVYPIGPLCRPIQ--------SSKTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQ 293 (481)
T ss_pred hccccccccCCceEEecCccCCcC--------CCcchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCC
Confidence 566654320 012345699999999888999999999999999999999999999999
Q ss_pred cEEEEEcCCCCCC-------Cc----cchhcccCCchhHHHhhccCCCCeEEecccChHHhhcccccceeeeccChhhHH
Q 043168 293 NFIWVVKPPLGFD-------LN----SEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVEILSHKSISAFLSHCGWNSVL 361 (473)
Q Consensus 293 ~~i~~~~~~~~~~-------~~----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~~~I~HgG~gs~~ 361 (473)
+|||++....... .+ .+... +.+|++|.+++. ..++++.+|+||.+||+|+++++|||||||||++
T Consensus 294 ~flW~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~lp~~f~eR~~--~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~ 370 (481)
T PLN02992 294 RFVWVVRPPVDGSACSAYFSANGGETRDNTP-EYLPEGFVSRTH--DRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTL 370 (481)
T ss_pred CEEEEEeCCcccccccccccCcccccccchh-hhCCHHHHHHhc--CCCEEEeecCCHHHHhCCcccCeeEecCchhHHH
Confidence 9999996431000 00 00001 248999999998 8999999999999999999999999999999999
Q ss_pred HHHhcCCCEEecccccchhhhHHHHHHHHcceEEEecccCCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHhh
Q 043168 362 EALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAKFELVMNETEKGMDLRKKASEVEMIIKNAV 441 (473)
Q Consensus 362 eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~~~~~~~~a~ 441 (473)
||+++|||||++|++.||+.||+++++.||+|+.++. .+..++.++|.++|+++|.++ +++.+|++++++++.+++|+
T Consensus 371 Eal~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~-~~~~~~~~~l~~av~~vm~~~-~g~~~r~~a~~~~~~a~~Av 448 (481)
T PLN02992 371 ESVVGGVPMIAWPLFAEQNMNAALLSDELGIAVRSDD-PKEVISRSKIEALVRKVMVEE-EGEEMRRKVKKLRDTAEMSL 448 (481)
T ss_pred HHHHcCCCEEecCccchhHHHHHHHHHHhCeeEEecC-CCCcccHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999655699999975 112589999999999999987 78899999999999999997
Q ss_pred hhhhc--cCCChHHHHHHHHHHHHH
Q 043168 442 RNEEK--FKGSSVKAMEQFLDAALM 464 (473)
Q Consensus 442 ~~~~~--~~g~~~~~~~~~~~~~~~ 464 (473)
. +|||+.+++++|++++..
T Consensus 449 ----~~~~GGSS~~~l~~~v~~~~~ 469 (481)
T PLN02992 449 ----SIDGGGVAHESLCRVTKECQR 469 (481)
T ss_pred ----cCCCCCchHHHHHHHHHHHHH
Confidence 6 399999999999999754
No 7
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=1.2e-59 Score=467.94 Aligned_cols=438 Identities=27% Similarity=0.456 Sum_probs=326.8
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhhcCCCC-CCceEEeccCCCCCCCCCCCCCCCCC
Q 043168 4 RKENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQN-SSIHLREIPFDGIAHDLPPCTENSDS 82 (473)
Q Consensus 4 ~~~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~-~~~~~~~ip~~~~~~~l~~~~~~~~~ 82 (473)
.+.||+++|+|++||++|++.||+.|.. +|++|||++++.+...+....... .++++..+|+++. ++++.+.+...+
T Consensus 5 ~~~HVvl~P~paqGHi~P~l~LAk~La~-~G~~vT~v~t~~n~~~~~~~~~~~~~~i~~~~lp~p~~-dglp~~~~~~~~ 82 (472)
T PLN02670 5 EVLHVAMFPWLAMGHLIPFLRLSKLLAQ-KGHKISFISTPRNLHRLPKIPSQLSSSITLVSFPLPSV-PGLPSSAESSTD 82 (472)
T ss_pred CCcEEEEeCChhhhHHHHHHHHHHHHHh-CCCEEEEEeCCchHHhhhhccccCCCCeeEEECCCCcc-CCCCCCcccccc
Confidence 4569999999999999999999999999 999999999998877665321111 4689999998743 577765443222
Q ss_pred CCCCCchHHHHHHhhhhHHHHHHHhhhhhccCCCCCeEEEeCCCcchHHHHHHHhCCcEEEEccccHHHHHHHHhhhhcC
Q 043168 83 LPFHLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALFVGGGSFGFACFYSLWLNL 162 (473)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~ 162 (473)
.+......+......+.+.+.+++++. ++++||+|.+++|+..+|+++|||++.+++++++.+..+.++....
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~ 155 (472)
T PLN02670 83 VPYTKQQLLKKAFDLLEPPLTTFLETS-------KPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLM 155 (472)
T ss_pred cchhhHHHHHHHHHHhHHHHHHHHHhC-------CCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhh
Confidence 221111234445567788889999887 8999999999999999999999999999998888777655332111
Q ss_pred CCC---C-CCCc-ccCCC-CC--CcccchhhhhhhhhccCCCChHHHHHHHHhhhcccCceEEecchhhhccc-------
Q 043168 163 PHR---D-SDEF-LLPDF-PE--ASRIHVTQMTKFLRLADGSDSLSVFFQKVLPQWMNADGILFNTVEELDKI------- 227 (473)
Q Consensus 163 p~~---~-~~~~-~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~------- 227 (473)
... . .+.. .+|++ |. ...+...+++.++............+.+......+++.+++|||.+||..
T Consensus 156 ~~~~~~~~~~~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~~l~~l~~ 235 (472)
T PLN02670 156 EGGDLRSTAEDFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPEWFDLLSD 235 (472)
T ss_pred hcccCCCccccccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHHHHHHHHH
Confidence 110 1 1111 24443 21 11244566666554322121222222233344567889999999999986
Q ss_pred --------cCccccCCCCCCCCCCCCCCCchhhhhhhccCCCCceEEEEecCcccCCHHHHHHHHHHHHhCCCcEEEEEc
Q 043168 228 --------VGPLLLSTGSRAGAGKEYGISTESCKNWLDTKPCNSVIYVSFGSQNTIAASQMMQLAMALEACGKNFIWVVK 299 (473)
Q Consensus 228 --------vGp~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~ 299 (473)
|||+.+................+++.+||+++++++||||||||....+.+++++++.+|+.++.+|||++.
T Consensus 236 ~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~FlWv~r 315 (472)
T PLN02670 236 LYRKPIIPIGFLPPVIEDDEEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSETPFFWVLR 315 (472)
T ss_pred hhCCCeEEEecCCccccccccccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEc
Confidence 888875310000000000011257999999998889999999999999999999999999999999999997
Q ss_pred CCCCCCCccchhcccCCchhHHHhhccCCCCeEEecccChHHhhcccccceeeeccChhhHHHHHhcCCCEEecccccch
Q 043168 300 PPLGFDLNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVEILSHKSISAFLSHCGWNSVLEALSHGVPIIGWPLAAEQ 379 (473)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~i~~P~~~DQ 379 (473)
... +...+.. ..+|++|.+++. ..++++.+|+||.+||+|+++++|||||||||++||+++|||||++|++.||
T Consensus 316 ~~~--~~~~~~~--~~lp~~f~~~~~--~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ 389 (472)
T PLN02670 316 NEP--GTTQNAL--EMLPDGFEERVK--GRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVLNEQ 389 (472)
T ss_pred CCc--ccccchh--hcCChHHHHhcc--CCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcchhcc
Confidence 532 1111111 248999999987 7889999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHcceEEEeccc-CCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHhhhhhhccCCChHHHHHHH
Q 043168 380 FYNSKLLEEVIGVCVEVARGM-NCEVSKENLSAKFELVMNETEKGMDLRKKASEVEMIIKNAVRNEEKFKGSSVKAMEQF 458 (473)
Q Consensus 380 ~~~a~~v~~~lG~G~~l~~~~-~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~~~~~~~~a~~~~~~~~g~~~~~~~~~ 458 (473)
+.||+++++. |+|+.+...+ +..++.++|.++|+++|.++ +|++||+||+++++.++ ..++ ..+++++|
T Consensus 390 ~~Na~~v~~~-g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~-~g~~~r~~a~~l~~~~~-------~~~~-~~~~~~~~ 459 (472)
T PLN02670 390 GLNTRLLHGK-KLGLEVPRDERDGSFTSDSVAESVRLAMVDD-AGEEIRDKAKEMRNLFG-------DMDR-NNRYVDEL 459 (472)
T ss_pred HHHHHHHHHc-CeeEEeeccccCCcCcHHHHHHHHHHHhcCc-chHHHHHHHHHHHHHHh-------Ccch-hHHHHHHH
Confidence 9999999865 9999997521 23489999999999999886 67899999999999997 3344 78999999
Q ss_pred HHHHHHhh
Q 043168 459 LDAALMMK 466 (473)
Q Consensus 459 ~~~~~~~~ 466 (473)
++++..+.
T Consensus 460 ~~~l~~~~ 467 (472)
T PLN02670 460 VHYLRENR 467 (472)
T ss_pred HHHHHHhc
Confidence 99998765
No 8
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=1.5e-59 Score=466.17 Aligned_cols=420 Identities=27% Similarity=0.406 Sum_probs=320.1
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhhcCCCCCCceEEeccCCCCCCCCCCCCCCCCCC
Q 043168 4 RKENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSL 83 (473)
Q Consensus 4 ~~~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~ip~~~~~~~l~~~~~~~~~~ 83 (473)
.+.||+++|+|+.||++|++.||+.|+. +||+|||++++.+...+...+....++++..+|++ ..++++.+.......
T Consensus 3 ~~~hvv~~P~paqGHi~P~l~LAk~La~-~G~~VT~vtt~~~~~~i~~~~a~~~~i~~~~l~~p-~~dgLp~g~~~~~~l 80 (442)
T PLN02208 3 PKFHAFMFPWFAFGHMIPFLHLANKLAE-KGHRVTFLLPKKAQKQLEHHNLFPDSIVFHPLTIP-PVNGLPAGAETTSDI 80 (442)
T ss_pred CCCEEEEecCccccHHHHHHHHHHHHHh-CCCEEEEEeccchhhhhhcccCCCCceEEEEeCCC-CccCCCCCcccccch
Confidence 4679999999999999999999999999 99999999999888877664421135677777654 124666653322221
Q ss_pred CCCCchHHHHHHhhhhHHHHHHHhhhhhccCCCCCeEEEeCCCcchHHHHHHHhCCcEEEEccccHHHHHHHHhhhhcCC
Q 043168 84 PFHLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALFVGGGSFGFACFYSLWLNLP 163 (473)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p 163 (473)
.......+......+.+.+++++++. ++|+||+| ++.|+..+|+++|||++.+++++++.+. +.+. +
T Consensus 81 ~~~l~~~~~~~~~~~~~~l~~~L~~~-------~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~----~ 147 (442)
T PLN02208 81 PISMDNLLSEALDLTRDQVEAAVRAL-------RPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHV----P 147 (442)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhC-------CCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHcc----C
Confidence 11111234445567888899999888 89999999 5789999999999999999999887654 3322 1
Q ss_pred CCCCCCcccCCCCCC-cccchhhhhhhhhccCCCChHHHHHHHHhhhcccCceEEecchhhhccc---------------
Q 043168 164 HRDSDEFLLPDFPEA-SRIHVTQMTKFLRLADGSDSLSVFFQKVLPQWMNADGILFNTVEELDKI--------------- 227 (473)
Q Consensus 164 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~--------------- 227 (473)
... ....+|++|.. +.++...++.+ . .....+..+..........++.+++|||.+||+.
T Consensus 148 ~~~-~~~~~pglp~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~~~~~~v~~ 223 (442)
T PLN02208 148 GGK-LGVPPPGYPSSKVLFRENDAHAL-A--TLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISRQYHKKVLL 223 (442)
T ss_pred ccc-cCCCCCCCCCcccccCHHHcCcc-c--ccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHhhcCCCEEE
Confidence 100 01225667642 22444455432 1 1111223333334345567899999999999985
Q ss_pred cCccccCCCCCCCCCCCCCCCchhhhhhhccCCCCceEEEEecCcccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCc
Q 043168 228 VGPLLLSTGSRAGAGKEYGISTESCKNWLDTKPCNSVIYVSFGSQNTIAASQMMQLAMALEACGKNFIWVVKPPLGFDLN 307 (473)
Q Consensus 228 vGp~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~ 307 (473)
|||+...... ....++++.+||+.++++++|||||||...++.+++.+++.+++..+.+++|++....+. +
T Consensus 224 vGpl~~~~~~-------~~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~~~~~--~ 294 (442)
T PLN02208 224 TGPMFPEPDT-------SKPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKPPRGS--S 294 (442)
T ss_pred EeecccCcCC-------CCCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeCCCcc--c
Confidence 8888754310 123467899999999888999999999998899999999999988899999998754110 0
Q ss_pred cchhcccCCchhHHHhhccCCCCeEEecccChHHhhcccccceeeeccChhhHHHHHhcCCCEEecccccchhhhHHHHH
Q 043168 308 SEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVEILSHKSISAFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLE 387 (473)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~ 387 (473)
.. . +.+|++|.+++. ..|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+..||+.||++++
T Consensus 295 ~~--~-~~lp~~f~~r~~--~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~ 369 (442)
T PLN02208 295 TV--Q-EGLPEGFEERVK--GRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMT 369 (442)
T ss_pred ch--h-hhCCHHHHHHHh--cCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHHHHHH
Confidence 01 1 248999999987 889999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHcceEEEecccCCccCHHHHHHHHHHHHcCC-hhhHHHHHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHH
Q 043168 388 EVIGVCVEVARGMNCEVSKENLSAKFELVMNET-EKGMDLRKKASEVEMIIKNAVRNEEKFKGSSVKAMEQFLDAALM 464 (473)
Q Consensus 388 ~~lG~G~~l~~~~~~~~~~~~l~~ai~~~l~~~-~~~~~~~~~a~~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~ 464 (473)
+.||+|+.+..++++.++.++|.++|+++|+++ +.++.+|++++++++.+. + +||+.+++++|++++..
T Consensus 370 ~~~g~gv~~~~~~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~-------~-~gsS~~~l~~~v~~l~~ 439 (442)
T PLN02208 370 EEFEVSVEVSREKTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILV-------S-PGLLTGYVDKFVEELQE 439 (442)
T ss_pred HHhceeEEeccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHh-------c-CCcHHHHHHHHHHHHHH
Confidence 767999999762112389999999999999876 368899999999999984 3 67899999999999854
No 9
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=4.3e-59 Score=465.62 Aligned_cols=434 Identities=26% Similarity=0.461 Sum_probs=326.6
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhh--cC----CCC---CCceEEeccCCCCCCCCC
Q 043168 4 RKENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKLKS--SL----PQN---SSIHLREIPFDGIAHDLP 74 (473)
Q Consensus 4 ~~~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~~--~~----~~~---~~~~~~~ip~~~~~~~l~ 74 (473)
.+.||+++|+|++||++|++.||+.|+. +|..|||++++.+...+.+ .. ... ..++|..+| +++|
T Consensus 6 ~~~HVv~~PfpaqGHi~Pml~lA~~La~-~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~p-----dglp 79 (480)
T PLN02555 6 SLVHVMLVSFPGQGHVNPLLRLGKLLAS-KGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFE-----DGWA 79 (480)
T ss_pred CCCEEEEECCcccccHHHHHHHHHHHHh-CCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCC-----CCCC
Confidence 4679999999999999999999999999 9999999999987766542 10 000 123444333 3665
Q ss_pred CCCCCCCCCCCCCchHHHHHH-hhhhHHHHHHHhhhhhccCCCCCeEEEeCCCcchHHHHHHHhCCcEEEEccccHHHHH
Q 043168 75 PCTENSDSLPFHLFPNFFEST-LSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALFVGGGSFGFA 153 (473)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~ 153 (473)
.+.... ..+..++..+ ..+.+.+.++|+.... ++++++|||+|.+++|+..+|+++|||++.+++++++.+.
T Consensus 80 ~~~~~~-----~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~ 152 (480)
T PLN02555 80 EDDPRR-----QDLDLYLPQLELVGKREIPNLVKRYAE--QGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFS 152 (480)
T ss_pred CCcccc-----cCHHHHHHHHHHhhhHHHHHHHHHHhc--cCCCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHH
Confidence 543211 1123344444 3566778888876421 1213499999999999999999999999999999998887
Q ss_pred HHHhhhhc-CCCCC---C-CCcccCCCCCCcccchhhhhhhhhccCCCChHHHHHHHHhhhcccCceEEecchhhhccc-
Q 043168 154 CFYSLWLN-LPHRD---S-DEFLLPDFPEASRIHVTQMTKFLRLADGSDSLSVFFQKVLPQWMNADGILFNTVEELDKI- 227 (473)
Q Consensus 154 ~~~~~~~~-~p~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~- 227 (473)
.+.+.+.. .+... . ..+.+|++|. +...+++.++............+.+.......++.+++|||.+||..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~iPglp~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~ 229 (480)
T PLN02555 153 AYYHYYHGLVPFPTETEPEIDVQLPCMPL---LKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKEI 229 (480)
T ss_pred HHHHHhhcCCCcccccCCCceeecCCCCC---cCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHHH
Confidence 76654322 12111 1 2245788876 77777776654222222333334444455677889999999999986
Q ss_pred ------------cCccccCCCCC-CCCCCCCCCCchhhhhhhccCCCCceEEEEecCcccCCHHHHHHHHHHHHhCCCcE
Q 043168 228 ------------VGPLLLSTGSR-AGAGKEYGISTESCKNWLDTKPCNSVIYVSFGSQNTIAASQMMQLAMALEACGKNF 294 (473)
Q Consensus 228 ------------vGp~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~ 294 (473)
|||+....... ...+...+..++++.+||++++++++|||||||+...+.+++.+++.+|+..+++|
T Consensus 230 ~~~l~~~~~v~~iGPl~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~f 309 (480)
T PLN02555 230 IDYMSKLCPIKPVGPLFKMAKTPNSDVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSF 309 (480)
T ss_pred HHHHhhCCCEEEeCcccCccccccccccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcCCeE
Confidence 89987542110 10001112335679999999988889999999999999999999999999999999
Q ss_pred EEEEcCCCCCCCccchhcccCCchhHHHhhccCCCCeEEecccChHHhhcccccceeeeccChhhHHHHHhcCCCEEecc
Q 043168 295 IWVVKPPLGFDLNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVEILSHKSISAFLSHCGWNSVLEALSHGVPIIGWP 374 (473)
Q Consensus 295 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~i~~P 374 (473)
||++..... .++... ..+|+++.++. +.|+.+.+|+||.+||+|++|++|||||||||++||+++|||||++|
T Consensus 310 lW~~~~~~~---~~~~~~-~~lp~~~~~~~---~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P 382 (480)
T PLN02555 310 LWVMRPPHK---DSGVEP-HVLPEEFLEKA---GDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFP 382 (480)
T ss_pred EEEEecCcc---cccchh-hcCChhhhhhc---CCceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCC
Confidence 999874310 000111 24788887765 45677789999999999999999999999999999999999999999
Q ss_pred cccchhhhHHHHHHHHcceEEEeccc--CCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHhhhhhhccCCChH
Q 043168 375 LAAEQFYNSKLLEEVIGVCVEVARGM--NCEVSKENLSAKFELVMNETEKGMDLRKKASEVEMIIKNAVRNEEKFKGSSV 452 (473)
Q Consensus 375 ~~~DQ~~~a~~v~~~lG~G~~l~~~~--~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~~~~~~~~a~~~~~~~~g~~~ 452 (473)
++.||+.||+++++.||+|+++..+. ...++.++|.++|+++|.++ +++.+|+||++|++..++|+ .+|||+.
T Consensus 383 ~~~DQ~~Na~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~-~g~~~r~ra~~l~~~a~~A~----~egGSS~ 457 (480)
T PLN02555 383 QWGDQVTDAVYLVDVFKTGVRLCRGEAENKLITREEVAECLLEATVGE-KAAELKQNALKWKEEAEAAV----AEGGSSD 457 (480)
T ss_pred CccccHHHHHHHHHHhCceEEccCCccccCcCcHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHh----cCCCcHH
Confidence 99999999999999999999994210 14689999999999999886 68899999999999999999 9999999
Q ss_pred HHHHHHHHHHHHh
Q 043168 453 KAMEQFLDAALMM 465 (473)
Q Consensus 453 ~~~~~~~~~~~~~ 465 (473)
+++++||+++...
T Consensus 458 ~~l~~~v~~i~~~ 470 (480)
T PLN02555 458 RNFQEFVDKLVRK 470 (480)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998754
No 10
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=4.9e-59 Score=463.64 Aligned_cols=419 Identities=27% Similarity=0.483 Sum_probs=315.6
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhhcCCCCCCceEEeccCCCCCCCCCCCCCCCCCC
Q 043168 4 RKENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSL 83 (473)
Q Consensus 4 ~~~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~ip~~~~~~~l~~~~~~~~~~ 83 (473)
.+.||+++|+|++||++|++.||+.|.. +|+.|||++++.+..... ... .+++|..+| +++|++... ..
T Consensus 6 ~~~HVvlvPfpaqGHi~P~l~LAk~La~-~G~~VT~v~T~~n~~~~~-~~~--~~i~~~~ip-----~glp~~~~~--~~ 74 (451)
T PLN02410 6 ARRRVVLVPVPAQGHISPMMQLAKTLHL-KGFSITIAQTKFNYFSPS-DDF--TDFQFVTIP-----ESLPESDFK--NL 74 (451)
T ss_pred CCCEEEEECCCccccHHHHHHHHHHHHc-CCCEEEEEeCcccccccc-cCC--CCeEEEeCC-----CCCCccccc--cc
Confidence 3459999999999999999999999999 999999999987652111 111 467888877 356653211 11
Q ss_pred CCCCchHHHHHH-hhhhHHHHHHHhhhhhccCCCCCeEEEeCCCcchHHHHHHHhCCcEEEEccccHHHHHHHHhhhhc-
Q 043168 84 PFHLFPNFFEST-LSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALFVGGGSFGFACFYSLWLN- 161 (473)
Q Consensus 84 ~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~- 161 (473)
. ...++... ..+.+.+.+++++...+ .++++++||+|.+++|+..+|+++|||++.+++++++.+..+.++...
T Consensus 75 ~---~~~~~~~~~~~~~~~~~~~L~~l~~~-~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~ 150 (451)
T PLN02410 75 G---PIEFLHKLNKECQVSFKDCLGQLVLQ-QGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLY 150 (451)
T ss_pred C---HHHHHHHHHHHhHHHHHHHHHHHHhc-cCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHH
Confidence 1 12233333 45566777777664211 122579999999999999999999999999999999888766543221
Q ss_pred -----CCCCC---CCCcccCCCCCCcccchhhhhhhhhccCCCChHHHHHHHHhhhcccCceEEecchhhhccc------
Q 043168 162 -----LPHRD---SDEFLLPDFPEASRIHVTQMTKFLRLADGSDSLSVFFQKVLPQWMNADGILFNTVEELDKI------ 227 (473)
Q Consensus 162 -----~p~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~------ 227 (473)
.|... .+...+|+++. ++..+++..... ........+.... ....++.+++|||.+||+.
T Consensus 151 ~~~~~~~~~~~~~~~~~~iPg~~~---~~~~dlp~~~~~--~~~~~~~~~~~~~-~~~~~~~vlvNTf~eLE~~~~~~l~ 224 (451)
T PLN02410 151 ANNVLAPLKEPKGQQNELVPEFHP---LRCKDFPVSHWA--SLESIMELYRNTV-DKRTASSVIINTASCLESSSLSRLQ 224 (451)
T ss_pred hccCCCCccccccCccccCCCCCC---CChHHCcchhcC--CcHHHHHHHHHHh-hcccCCEEEEeChHHhhHHHHHHHH
Confidence 12111 12234677665 555555543221 1112222222222 3467889999999999986
Q ss_pred ---------cCccccCCCCCCCCCCCCCCCchhhhhhhccCCCCceEEEEecCcccCCHHHHHHHHHHHHhCCCcEEEEE
Q 043168 228 ---------VGPLLLSTGSRAGAGKEYGISTESCKNWLDTKPCNSVIYVSFGSQNTIAASQMMQLAMALEACGKNFIWVV 298 (473)
Q Consensus 228 ---------vGp~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~ 298 (473)
|||+....... ...+....++.+||+++++++||||||||....+.+++++++.+|+..+.+|||++
T Consensus 225 ~~~~~~v~~vGpl~~~~~~~----~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~ 300 (451)
T PLN02410 225 QQLQIPVYPIGPLHLVASAP----TSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVI 300 (451)
T ss_pred hccCCCEEEecccccccCCC----ccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEE
Confidence 78886542100 01112234678999999888999999999999999999999999999999999999
Q ss_pred cCCCCCCCccchhcccCCchhHHHhhccCCCCeEEecccChHHhhcccccceeeeccChhhHHHHHhcCCCEEecccccc
Q 043168 299 KPPLGFDLNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVEILSHKSISAFLSHCGWNSVLEALSHGVPIIGWPLAAE 378 (473)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~i~~P~~~D 378 (473)
..+. .+..... +.+|++|.+++. .|..+.+|+||.+||+|+++++|||||||||++||+++|||||++|++.|
T Consensus 301 r~~~---~~~~~~~-~~lp~~f~er~~---~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~D 373 (451)
T PLN02410 301 RPGS---VRGSEWI-ESLPKEFSKIIS---GRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSD 373 (451)
T ss_pred ccCc---ccccchh-hcCChhHHHhcc---CCeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEecccccc
Confidence 7431 0000000 237999999874 55566799999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHcceEEEecccCCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHhhhhhhccCCChHHHHHHH
Q 043168 379 QFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAKFELVMNETEKGMDLRKKASEVEMIIKNAVRNEEKFKGSSVKAMEQF 458 (473)
Q Consensus 379 Q~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~~~~~~~~a~~~~~~~~g~~~~~~~~~ 458 (473)
|+.||+++++.||+|+.+. ..++.++|+++|+++|.++ ++++||++|+++++.+++|+ .+|||+.+++++|
T Consensus 374 Q~~na~~~~~~~~~G~~~~----~~~~~~~v~~av~~lm~~~-~~~~~r~~a~~l~~~~~~a~----~~gGsS~~~l~~f 444 (451)
T PLN02410 374 QKVNARYLECVWKIGIQVE----GDLDRGAVERAVKRLMVEE-EGEEMRKRAISLKEQLRASV----ISGGSSHNSLEEF 444 (451)
T ss_pred CHHHHHHHHHHhCeeEEeC----CcccHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHHHh----cCCCCHHHHHHHH
Confidence 9999999998889999996 3689999999999999987 48899999999999999999 9999999999999
Q ss_pred HHHHH
Q 043168 459 LDAAL 463 (473)
Q Consensus 459 ~~~~~ 463 (473)
++++.
T Consensus 445 v~~~~ 449 (451)
T PLN02410 445 VHFMR 449 (451)
T ss_pred HHHHH
Confidence 99875
No 11
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=5.3e-59 Score=465.27 Aligned_cols=420 Identities=26% Similarity=0.460 Sum_probs=315.6
Q ss_pred CCCceEEEEcCCCccCHHHHHHHHHH--HHhCCCcEEEEEcCCcchhhhhhcCCCCCCceEEeccCCCCCCCCCCCCCCC
Q 043168 3 QRKENIVMFPLMAQGHIIPFLALALH--LENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENS 80 (473)
Q Consensus 3 ~~~~~Il~~~~~~~GHv~P~l~LA~~--L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~ip~~~~~~~l~~~~~~~ 80 (473)
.++.||+++|+|++||++|++.||+. |.. +|++|||++++.+...+...+.....+++..+| ++++.+..
T Consensus 6 ~~~~hvv~~P~pa~GHi~P~l~La~~L~L~~-~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~-----~glp~~~~-- 77 (456)
T PLN02210 6 GQETHVLMVTLAFQGHINPMLKLAKHLSLSS-KNLHFTLATTEQARDLLSTVEKPRRPVDLVFFS-----DGLPKDDP-- 77 (456)
T ss_pred CCCCEEEEeCCcccccHHHHHHHHHHHHhhc-CCcEEEEEeccchhhhhccccCCCCceEEEECC-----CCCCCCcc--
Confidence 35679999999999999999999999 558 999999999999887765433211345555444 35655421
Q ss_pred CCCCCCCchHHHHHH-hhhhHHHHHHHhhhhhccCCCCCeEEEeCCCcchHHHHHHHhCCcEEEEccccHHHHHHHHhhh
Q 043168 81 DSLPFHLFPNFFEST-LSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALFVGGGSFGFACFYSLW 159 (473)
Q Consensus 81 ~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~ 159 (473)
.....++..+ +...+.+.+++++. +||+||+|.+++|+..+|+++|||++.+++.+++.+..+.+..
T Consensus 78 -----~~~~~~~~~~~~~~~~~l~~~l~~~-------~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~ 145 (456)
T PLN02210 78 -----RAPETLLKSLNKVGAKNLSKIIEEK-------RYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYY 145 (456)
T ss_pred -----cCHHHHHHHHHHhhhHHHHHHHhcC-------CCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhh
Confidence 1122334433 35566778888776 8999999999999999999999999999988888777665432
Q ss_pred h-cCCCCC-C---CCcccCCCCCCcccchhhhhhhhhccCCCChHHHHHHHHhhhcccCceEEecchhhhccc-------
Q 043168 160 L-NLPHRD-S---DEFLLPDFPEASRIHVTQMTKFLRLADGSDSLSVFFQKVLPQWMNADGILFNTVEELDKI------- 227 (473)
Q Consensus 160 ~-~~p~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~------- 227 (473)
. ..+... . +...+|+++. +...+++..+..... ..+...+.+.......++.+++||+.+||..
T Consensus 146 ~~~~~~~~~~~~~~~~~~Pgl~~---~~~~dl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~ 221 (456)
T PLN02210 146 MKTNSFPDLEDLNQTVELPALPL---LEVRDLPSFMLPSGG-AHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMAD 221 (456)
T ss_pred hccCCCCcccccCCeeeCCCCCC---CChhhCChhhhcCCc-hHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhh
Confidence 1 111111 1 1244677664 566666655443211 1222333344444567789999999999875
Q ss_pred ------cCccccCC---CCCC--CCCC--CCCCCchhhhhhhccCCCCceEEEEecCcccCCHHHHHHHHHHHHhCCCcE
Q 043168 228 ------VGPLLLST---GSRA--GAGK--EYGISTESCKNWLDTKPCNSVIYVSFGSQNTIAASQMMQLAMALEACGKNF 294 (473)
Q Consensus 228 ------vGp~~~~~---~~~~--~~~~--~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~ 294 (473)
|||+++.. .... .... ..+..++++.+||++++++++|||||||....+.+++++++.+|+..+++|
T Consensus 222 ~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~f 301 (456)
T PLN02210 222 LKPVIPIGPLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGVPF 301 (456)
T ss_pred cCCEEEEcccCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCE
Confidence 99997521 0000 0000 012235678999999888899999999999889999999999999999999
Q ss_pred EEEEcCCCCCCCccchhcccCCchhHHHhhccCCCCeEEecccChHHhhcccccceeeeccChhhHHHHHhcCCCEEecc
Q 043168 295 IWVVKPPLGFDLNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVEILSHKSISAFLSHCGWNSVLEALSHGVPIIGWP 374 (473)
Q Consensus 295 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~i~~P 374 (473)
||+++... . ...+..+.++.. +.+..+.+|+||.+||+|+++++|||||||||++|++++|||||++|
T Consensus 302 lw~~~~~~------~----~~~~~~~~~~~~--~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P 369 (456)
T PLN02210 302 LWVIRPKE------K----AQNVQVLQEMVK--EGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYP 369 (456)
T ss_pred EEEEeCCc------c----ccchhhHHhhcc--CCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecc
Confidence 99997531 0 012344555542 23345669999999999999999999999999999999999999999
Q ss_pred cccchhhhHHHHHHHHcceEEEeccc-CCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHhhhhhhccCCChHH
Q 043168 375 LAAEQFYNSKLLEEVIGVCVEVARGM-NCEVSKENLSAKFELVMNETEKGMDLRKKASEVEMIIKNAVRNEEKFKGSSVK 453 (473)
Q Consensus 375 ~~~DQ~~~a~~v~~~lG~G~~l~~~~-~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~~~~~~~~a~~~~~~~~g~~~~ 453 (473)
+..||+.||+++++.||+|+.+..+. +..++.++|+++|+++|.++ +|+.+|+||+++++..++|+ .+|||+.+
T Consensus 370 ~~~DQ~~na~~~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~-~g~~~r~~a~~l~~~a~~Av----~~gGSS~~ 444 (456)
T PLN02210 370 SWTDQPIDARLLVDVFGIGVRMRNDAVDGELKVEEVERCIEAVTEGP-AAADIRRRAAELKHVARLAL----APGGSSAR 444 (456)
T ss_pred cccccHHHHHHHHHHhCeEEEEeccccCCcCCHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHh----cCCCcHHH
Confidence 99999999999998679999996421 23689999999999999887 67789999999999999999 99999999
Q ss_pred HHHHHHHHHH
Q 043168 454 AMEQFLDAAL 463 (473)
Q Consensus 454 ~~~~~~~~~~ 463 (473)
++++|++++.
T Consensus 445 ~l~~~v~~~~ 454 (456)
T PLN02210 445 NLDLFISDIT 454 (456)
T ss_pred HHHHHHHHHh
Confidence 9999999875
No 12
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=6.3e-59 Score=462.27 Aligned_cols=421 Identities=27% Similarity=0.394 Sum_probs=318.6
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhhcCCCCCCceEEeccCCCCCCCCCCCCCCCCCC
Q 043168 4 RKENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSL 83 (473)
Q Consensus 4 ~~~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~ip~~~~~~~l~~~~~~~~~~ 83 (473)
++.||+++|+|++||++|++.||+.|+. +|++|||++++.+...+...+...++++|..+++| ..++++.+.....+.
T Consensus 3 ~~~HVvlvPfpaqGHi~PmL~LAk~Las-~G~~VT~vtt~~~~~~i~~~~~~~~~i~~~~i~lP-~~dGLP~g~e~~~~l 80 (446)
T PLN00414 3 SKFHAFMYPWFGFGHMIPYLHLANKLAE-KGHRVTFFLPKKAHKQLQPLNLFPDSIVFEPLTLP-PVDGLPFGAETASDL 80 (446)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHh-CCCEEEEEeCCchhhhhcccccCCCceEEEEecCC-CcCCCCCcccccccc
Confidence 5679999999999999999999999999 99999999999887777554321135788777765 245777664333222
Q ss_pred CCCCchHHHHHHhhhhHHHHHHHhhhhhccCCCCCeEEEeCCCcchHHHHHHHhCCcEEEEccccHHHHHHHHhhhhcCC
Q 043168 84 PFHLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALFVGGGSFGFACFYSLWLNLP 163 (473)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p 163 (473)
+......+......+.+.+.++++.. +||+||+|. ++|+..+|+++|||++.|++++++.+..+.++...
T Consensus 81 ~~~~~~~~~~a~~~l~~~l~~~L~~~-------~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~~~-- 150 (446)
T PLN00414 81 PNSTKKPIFDAMDLLRDQIEAKVRAL-------KPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLAPRAE-- 150 (446)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcC-------CCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhCcHhh--
Confidence 22112345555667778888888776 899999995 88999999999999999999998877776542110
Q ss_pred CCCCCCcccCCCCCC-cccchhh--hhhhhhccCCCChHHHHHHHHhhhcccCceEEecchhhhccc-------------
Q 043168 164 HRDSDEFLLPDFPEA-SRIHVTQ--MTKFLRLADGSDSLSVFFQKVLPQWMNADGILFNTVEELDKI------------- 227 (473)
Q Consensus 164 ~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~------------- 227 (473)
....+|++|.. ..++... ++.++.. ....+.+.......++.+++|||.+||..
T Consensus 151 ----~~~~~pg~p~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~v 220 (446)
T PLN00414 151 ----LGFPPPDYPLSKVALRGHDANVCSLFAN------SHELFGLITKGLKNCDVVSIRTCVELEGNLCDFIERQCQRKV 220 (446)
T ss_pred ----cCCCCCCCCCCcCcCchhhcccchhhcc------cHHHHHHHHHhhccCCEEEEechHHHHHHHHHHHHHhcCCCe
Confidence 01124555531 1111111 1121110 11233334445667899999999999987
Q ss_pred --cCccccCCCCCCCCCCCCCCCchhhhhhhccCCCCceEEEEecCcccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCC
Q 043168 228 --VGPLLLSTGSRAGAGKEYGISTESCKNWLDTKPCNSVIYVSFGSQNTIAASQMMQLAMALEACGKNFIWVVKPPLGFD 305 (473)
Q Consensus 228 --vGp~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~ 305 (473)
|||+.+.... . ......+++.+|||++++++||||||||....+.+++.+++.+|+..+.+|+|++....+.
T Consensus 221 ~~VGPl~~~~~~-~----~~~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr~~~~~- 294 (446)
T PLN00414 221 LLTGPMLPEPQN-K----SGKPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVMPPKGS- 294 (446)
T ss_pred EEEcccCCCccc-c----cCcccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEecCCCc-
Confidence 8888653210 0 0011235688999999999999999999999999999999999999999999999753210
Q ss_pred CccchhcccCCchhHHHhhccCCCCeEEecccChHHhhcccccceeeeccChhhHHHHHhcCCCEEecccccchhhhHHH
Q 043168 306 LNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVEILSHKSISAFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKL 385 (473)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~i~~P~~~DQ~~~a~~ 385 (473)
.+. . +.+|++|.+++. ..++++.+|+||.+||+|+++++|||||||||++||+++|||||++|+..||+.||++
T Consensus 295 --~~~-~-~~lp~~f~~r~~--~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~ 368 (446)
T PLN00414 295 --STV-Q-EALPEGFEERVK--GRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITRL 368 (446)
T ss_pred --ccc-h-hhCChhHHHHhc--CCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHHHHHH
Confidence 011 1 348999999998 8899998999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcceEEEecccCCccCHHHHHHHHHHHHcCC-hhhHHHHHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHH
Q 043168 386 LEEVIGVCVEVARGMNCEVSKENLSAKFELVMNET-EKGMDLRKKASEVEMIIKNAVRNEEKFKGSSVKAMEQFLDAALM 464 (473)
Q Consensus 386 v~~~lG~G~~l~~~~~~~~~~~~l~~ai~~~l~~~-~~~~~~~~~a~~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~ 464 (473)
+++.||+|+.+..++.+.++.++|+++++++|.++ +.++.+|++|+++++.+. .+||++ ..+++|++++++
T Consensus 369 ~~~~~g~g~~~~~~~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~-------~~gg~s-s~l~~~v~~~~~ 440 (446)
T PLN00414 369 LTEELEVSVKVQREDSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLV-------SPGLLS-GYADKFVEALEN 440 (446)
T ss_pred HHHHhCeEEEeccccCCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHH-------cCCCcH-HHHHHHHHHHHH
Confidence 98777999999652112589999999999999875 367889999999999975 567733 448999999865
Q ss_pred hh
Q 043168 465 MK 466 (473)
Q Consensus 465 ~~ 466 (473)
..
T Consensus 441 ~~ 442 (446)
T PLN00414 441 EV 442 (446)
T ss_pred hc
Confidence 43
No 13
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=1e-58 Score=459.96 Aligned_cols=433 Identities=24% Similarity=0.413 Sum_probs=319.0
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcc-hhhhhhcCCCCCCceEEeccCCCCCCCCCCCCCCCCC
Q 043168 4 RKENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSN-LKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDS 82 (473)
Q Consensus 4 ~~~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~-~~~v~~~~~~~~~~~~~~ip~~~~~~~l~~~~~~~~~ 82 (473)
++.||+++|+|++||++|++.||+.|+..+|+.|||++++.+ ...+.......++++|..++ ++++.+.....
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~~~~~~~i~~~~i~-----dglp~g~~~~~- 75 (455)
T PLN02152 2 APPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPNHNNVENLSFLTFS-----DGFDDGVISNT- 75 (455)
T ss_pred CCcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhccCCCCCCEEEEEcC-----CCCCCcccccc-
Confidence 456999999999999999999999998416999999999864 22221111111368888876 36665432111
Q ss_pred CCCCCchHHHHHHhhhhHHHHHHHhhhhhccCCCCCeEEEeCCCcchHHHHHHHhCCcEEEEccccHHHHHHHHhhhhcC
Q 043168 83 LPFHLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALFVGGGSFGFACFYSLWLNL 162 (473)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~ 162 (473)
......+......+.+.+.+++++... .+.++++||+|.+++|+..+|+++|||++.+++.+++.+..+.+.+...
T Consensus 76 --~~~~~~~~~~~~~~~~~l~~~l~~l~~--~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~~ 151 (455)
T PLN02152 76 --DDVQNRLVNFERNGDKALSDFIEANLN--GDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTGN 151 (455)
T ss_pred --ccHHHHHHHHHHhccHHHHHHHHHhhc--cCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhccC
Confidence 111233444445667788888876521 1214599999999999999999999999999999999888776543211
Q ss_pred CCCCCCCcccCCCCCCcccchhhhhhhhhccCCCChHHHHHHHHhhhcc--cCceEEecchhhhccc------------c
Q 043168 163 PHRDSDEFLLPDFPEASRIHVTQMTKFLRLADGSDSLSVFFQKVLPQWM--NADGILFNTVEELDKI------------V 228 (473)
Q Consensus 163 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~l~~~------------v 228 (473)
.....+|+++. +...+++.++......+.+...+........ .++.+++|||.+||.. |
T Consensus 152 ----~~~~~iPglp~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~v~~V 224 (455)
T PLN02152 152 ----NSVFEFPNLPS---LEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPNIEMVAV 224 (455)
T ss_pred ----CCeeecCCCCC---CchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhcCCEEEE
Confidence 12244777765 6777777766433323333344434444332 2468999999999987 9
Q ss_pred CccccCCCCCCCC-CC--CCCCCchhhhhhhccCCCCceEEEEecCcccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCC
Q 043168 229 GPLLLSTGSRAGA-GK--EYGISTESCKNWLDTKPCNSVIYVSFGSQNTIAASQMMQLAMALEACGKNFIWVVKPPLGFD 305 (473)
Q Consensus 229 Gp~~~~~~~~~~~-~~--~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~ 305 (473)
||+.+........ +. ..+..+.++.+||++++++++|||||||...++.+++++++.+|+.++.+|||++......+
T Consensus 225 GPL~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r~~~~~~ 304 (455)
T PLN02152 225 GPLLPAEIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITDKLNRE 304 (455)
T ss_pred cccCccccccccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEecCcccc
Confidence 9997532100000 00 00122357999999998889999999999999999999999999999999999997531100
Q ss_pred Cc--cchhcccCCchhHHHhhccCCCCeEEecccChHHhhcccccceeeeccChhhHHHHHhcCCCEEecccccchhhhH
Q 043168 306 LN--SEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVEILSHKSISAFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNS 383 (473)
Q Consensus 306 ~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~i~~P~~~DQ~~~a 383 (473)
.. ........++++|.++. ..+..+.+|+||.+||+|+++++|||||||||++||+++|||+|++|++.||+.||
T Consensus 305 ~~~~~~~~~~~~~~~~f~e~~---~~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na 381 (455)
T PLN02152 305 AKIEGEEETEIEKIAGFRHEL---EEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSDQPANA 381 (455)
T ss_pred cccccccccccccchhHHHhc---cCCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEeccccccchHHH
Confidence 00 00000011467888776 45667779999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcceEEEecccCCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHH
Q 043168 384 KLLEEVIGVCVEVARGMNCEVSKENLSAKFELVMNETEKGMDLRKKASEVEMIIKNAVRNEEKFKGSSVKAMEQFLDAA 462 (473)
Q Consensus 384 ~~v~~~lG~G~~l~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~ 462 (473)
+++++.||+|+.+..+.+..++.++|+++|+++|+|+ ++.||+||+++++..++++ ++|||+++++++|++++
T Consensus 382 ~~~~~~~~~G~~~~~~~~~~~~~e~l~~av~~vm~~~--~~~~r~~a~~~~~~~~~a~----~~ggsS~~nl~~li~~i 454 (455)
T PLN02152 382 KLLEEIWKTGVRVRENSEGLVERGEIRRCLEAVMEEK--SVELRESAEKWKRLAIEAG----GEGGSSDKNVEAFVKTL 454 (455)
T ss_pred HHHHHHhCceEEeecCcCCcCcHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHH----cCCCcHHHHHHHHHHHh
Confidence 9999877888887542223569999999999999865 4579999999999999999 99999999999999975
No 14
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=1.6e-58 Score=461.47 Aligned_cols=415 Identities=24% Similarity=0.442 Sum_probs=314.2
Q ss_pred CCCC-CceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhhcCCCCCCceEEeccCCCCCCCCCCCCCC
Q 043168 1 MAQR-KENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTEN 79 (473)
Q Consensus 1 m~~~-~~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~ip~~~~~~~l~~~~~~ 79 (473)
|.|. +.||+++|+|++||++|++.||+.|.. +|++|||++++.+...+.......++++|..+|. +++.+.
T Consensus 1 ~~~~~~~HVVlvPfPaqGHi~PmL~LAk~Las-~G~~VT~vtt~~~~~~~~~~~~~~~~i~~v~lp~-----g~~~~~-- 72 (448)
T PLN02562 1 MKVTQRPKIILVPYPAQGHVTPMLKLASAFLS-RGFEPVVITPEFIHRRISATLDPKLGITFMSISD-----GQDDDP-- 72 (448)
T ss_pred CCCCCCcEEEEEcCccccCHHHHHHHHHHHHh-CCCEEEEEeCcchhhhhhhccCCCCCEEEEECCC-----CCCCCc--
Confidence 5443 449999999999999999999999999 9999999999988776665421113688888773 332211
Q ss_pred CCCCCCCCchHHHHHHh-hhhHHHHHHHhhhhhccCCCCCeEEEeCCCcchHHHHHHHhCCcEEEEccccHHHHHHHHhh
Q 043168 80 SDSLPFHLFPNFFESTL-SFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALFVGGGSFGFACFYSL 158 (473)
Q Consensus 80 ~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~ 158 (473)
+. .+..+...+. .+.+.+.++++..... + ++++||+|.+.+|+..+|+++|||++.+++++++.+..+.+.
T Consensus 73 ----~~-~~~~l~~a~~~~~~~~l~~ll~~l~~~--~-pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~ 144 (448)
T PLN02562 73 ----PR-DFFSIENSMENTMPPQLERLLHKLDED--G-EVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAI 144 (448)
T ss_pred ----cc-cHHHHHHHHHHhchHHHHHHHHHhcCC--C-CcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHH
Confidence 11 1234444554 5678888888775211 1 358999999999999999999999999999888777665443
Q ss_pred hhc-----CCCCC--C--CC-cccCCCCCCcccchhhhhhhhhccCCCChHHHHHHHHhhhcccCceEEecchhhhccc-
Q 043168 159 WLN-----LPHRD--S--DE-FLLPDFPEASRIHVTQMTKFLRLADGSDSLSVFFQKVLPQWMNADGILFNTVEELDKI- 227 (473)
Q Consensus 159 ~~~-----~p~~~--~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~- 227 (473)
+.. .+... . +. ..+|+++. ++..+++.++............+.+......+++.+++|||.+||+.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~Pg~~~---l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~ 221 (448)
T PLN02562 145 PELVRTGLISETGCPRQLEKICVLPEQPL---LSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDD 221 (448)
T ss_pred HHHhhccccccccccccccccccCCCCCC---CChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHH
Confidence 221 11110 0 11 14666665 66677776554322122333444444456677889999999999982
Q ss_pred ------------------cCccccCCCCCCCCCCCCCCCchhhhhhhccCCCCceEEEEecCcc-cCCHHHHHHHHHHHH
Q 043168 228 ------------------VGPLLLSTGSRAGAGKEYGISTESCKNWLDTKPCNSVIYVSFGSQN-TIAASQMMQLAMALE 288 (473)
Q Consensus 228 ------------------vGp~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~-~~~~~~~~~~~~al~ 288 (473)
|||+........ ......+.+.++.+||++++++++|||||||.. ..+.+++++++.+|+
T Consensus 222 ~~~~~~~~~~~~~~~v~~iGpl~~~~~~~~-~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~ 300 (448)
T PLN02562 222 VKNHQASYNNGQNPQILQIGPLHNQEATTI-TKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALE 300 (448)
T ss_pred HHHHHhhhccccCCCEEEecCccccccccc-CCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHH
Confidence 788765431000 000001223567799999988899999999986 578899999999999
Q ss_pred hCCCcEEEEEcCCCCCCCccchhcccCCchhHHHhhccCCCCeEEecccChHHhhcccccceeeeccChhhHHHHHhcCC
Q 043168 289 ACGKNFIWVVKPPLGFDLNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVEILSHKSISAFLSHCGWNSVLEALSHGV 368 (473)
Q Consensus 289 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~~~I~HgG~gs~~eal~~Gv 368 (473)
..+.+|||++..+. . +.+|++|.++. +.|+.+.+|+||.+||+|+++++|||||||||++||+++||
T Consensus 301 ~~g~~fiW~~~~~~---------~-~~l~~~~~~~~---~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~Gv 367 (448)
T PLN02562 301 ASGRPFIWVLNPVW---------R-EGLPPGYVERV---SKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQK 367 (448)
T ss_pred HCCCCEEEEEcCCc---------h-hhCCHHHHHHh---ccCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCC
Confidence 99999999986531 0 23788888776 56778889999999999999999999999999999999999
Q ss_pred CEEecccccchhhhHHHHHHHHcceEEEecccCCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHhhhhhhccC
Q 043168 369 PIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAKFELVMNETEKGMDLRKKASEVEMIIKNAVRNEEKFK 448 (473)
Q Consensus 369 P~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~~~~~~~~a~~~~~~~~ 448 (473)
|||++|+++||+.||+++++.+|+|+.+. .++.++|.++|+++|+|+ .||+||++++++++++ .+|
T Consensus 368 P~l~~P~~~DQ~~na~~~~~~~g~g~~~~-----~~~~~~l~~~v~~~l~~~----~~r~~a~~l~~~~~~~-----~~g 433 (448)
T PLN02562 368 RLLCYPVAGDQFVNCAYIVDVWKIGVRIS-----GFGQKEVEEGLRKVMEDS----GMGERLMKLRERAMGE-----EAR 433 (448)
T ss_pred CEEeCCcccchHHHHHHHHHHhCceeEeC-----CCCHHHHHHHHHHHhCCH----HHHHHHHHHHHHHHhc-----CCC
Confidence 99999999999999999987679998885 379999999999999998 8999999999998865 557
Q ss_pred CChHHHHHHHHHHH
Q 043168 449 GSSVKAMEQFLDAA 462 (473)
Q Consensus 449 g~~~~~~~~~~~~~ 462 (473)
|||.+++++|++++
T Consensus 434 GSS~~nl~~~v~~~ 447 (448)
T PLN02562 434 LRSMMNFTTLKDEL 447 (448)
T ss_pred CCHHHHHHHHHHHh
Confidence 89999999999976
No 15
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=7.5e-58 Score=459.85 Aligned_cols=427 Identities=28% Similarity=0.471 Sum_probs=323.3
Q ss_pred CCCceEEEEcCCCccCHHHHHHHHHHHHhCCC----cEEEEEcCCcchh----hhhhcC----CCCCCceEEeccCCCCC
Q 043168 3 QRKENIVMFPLMAQGHIIPFLALALHLENTNR----YTITFVNTPSNLK----KLKSSL----PQNSSIHLREIPFDGIA 70 (473)
Q Consensus 3 ~~~~~Il~~~~~~~GHv~P~l~LA~~L~~~rG----h~Vt~~~~~~~~~----~v~~~~----~~~~~~~~~~ip~~~~~ 70 (473)
|+|.||+++|+|++||++|++.||+.|.. +| +.|||++++.+.. .+.... ....+++|..+|.+
T Consensus 1 ~~~~HVVlvPfpaqGHi~P~l~LAk~La~-~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~--- 76 (480)
T PLN00164 1 MAAPTVVLLPVWGSGHLMSMLEAGKRLLA-SSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAV--- 76 (480)
T ss_pred CCCCEEEEeCCcchhHHHHHHHHHHHHHh-CCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCC---
Confidence 35679999999999999999999999999 86 7999999876422 232211 10025888888854
Q ss_pred CCCCCCCCCCCCCCCCCchHHHH-HHhhhhHHHHHHHhhhhhccCCCCCeEEEeCCCcchHHHHHHHhCCcEEEEccccH
Q 043168 71 HDLPPCTENSDSLPFHLFPNFFE-STLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALFVGGGS 149 (473)
Q Consensus 71 ~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~~~~~~ 149 (473)
.++.+.+ ....++. ....+.+.+++++++.. . ++++||+|.+++|+..+|+++|||++.|+++++
T Consensus 77 -~~p~~~e--------~~~~~~~~~~~~~~~~l~~~L~~l~----~-pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA 142 (480)
T PLN00164 77 -EPPTDAA--------GVEEFISRYIQLHAPHVRAAIAGLS----C-PVAALVVDFFCTPLLDVARELAVPAYVYFTSTA 142 (480)
T ss_pred -CCCCccc--------cHHHHHHHHHHhhhHHHHHHHHhcC----C-CceEEEECCcchhHHHHHHHhCCCEEEEECccH
Confidence 1222211 1122333 44566777888887651 1 459999999999999999999999999999999
Q ss_pred HHHHHHHhhhhcCCC-----CC-CCCcccCCCCCCcccchhhhhhhhhccCCCChHHHHHHHHhhhcccCceEEecchhh
Q 043168 150 FGFACFYSLWLNLPH-----RD-SDEFLLPDFPEASRIHVTQMTKFLRLADGSDSLSVFFQKVLPQWMNADGILFNTVEE 223 (473)
Q Consensus 150 ~~~~~~~~~~~~~p~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 223 (473)
+.+..+.+.+..... .. .+...+|+++. ++..+++..+.... +.....+....+....++.+++|||.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPGlp~---l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~~~~~vlvNTf~e 217 (480)
T PLN00164 143 AMLALMLRLPALDEEVAVEFEEMEGAVDVPGLPP---VPASSLPAPVMDKK--SPNYAWFVYHGRRFMEAAGIIVNTAAE 217 (480)
T ss_pred HHHHHHhhhhhhcccccCcccccCcceecCCCCC---CChHHCCchhcCCC--cHHHHHHHHHHHhhhhcCEEEEechHH
Confidence 888777654321100 00 12234777765 67777776544221 222233333345567788999999999
Q ss_pred hccc---------------------cCccccCCCCCCCCCCCCCCCchhhhhhhccCCCCceEEEEecCcccCCHHHHHH
Q 043168 224 LDKI---------------------VGPLLLSTGSRAGAGKEYGISTESCKNWLDTKPCNSVIYVSFGSQNTIAASQMMQ 282 (473)
Q Consensus 224 l~~~---------------------vGp~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~ 282 (473)
||+. |||+...... ......++++.+||++++++++|||||||....+.+++.+
T Consensus 218 LE~~~~~~~~~~~~~~~~~~~~v~~vGPl~~~~~~-----~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~e 292 (480)
T PLN00164 218 LEPGVLAAIADGRCTPGRPAPTVYPIGPVISLAFT-----PPAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVRE 292 (480)
T ss_pred hhHHHHHHHHhccccccCCCCceEEeCCCcccccc-----CCCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHH
Confidence 9875 5666532100 0011235679999999988899999999998889999999
Q ss_pred HHHHHHhCCCcEEEEEcCCCCCCC----ccchhcccCCchhHHHhhccCCCCeEEecccChHHhhcccccceeeeccChh
Q 043168 283 LAMALEACGKNFIWVVKPPLGFDL----NSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVEILSHKSISAFLSHCGWN 358 (473)
Q Consensus 283 ~~~al~~~~~~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~~~I~HgG~g 358 (473)
++.+|+..+.+|||++......+. +.+. . +.+|++|.++.+ ..++++.+|+||.+||+|+++++||||||||
T Consensus 293 la~gL~~s~~~flWv~~~~~~~~~~~~~~~~~-~-~~lp~~~~~~~~--~~g~~v~~w~PQ~~iL~h~~vg~fvtH~Gwn 368 (480)
T PLN00164 293 IAAGLERSGHRFLWVLRGPPAAGSRHPTDADL-D-ELLPEGFLERTK--GRGLVWPTWAPQKEILAHAAVGGFVTHCGWN 368 (480)
T ss_pred HHHHHHHcCCCEEEEEcCCcccccccccccch-h-hhCChHHHHHhc--CCCeEEeecCCHHHHhcCcccCeEEeecccc
Confidence 999999999999999985421000 0011 1 348889999887 8899999999999999999999999999999
Q ss_pred hHHHHHhcCCCEEecccccchhhhHHHHHHHHcceEEEeccc--CCccCHHHHHHHHHHHHcCCh-hhHHHHHHHHHHHH
Q 043168 359 SVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGM--NCEVSKENLSAKFELVMNETE-KGMDLRKKASEVEM 435 (473)
Q Consensus 359 s~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~--~~~~~~~~l~~ai~~~l~~~~-~~~~~~~~a~~~~~ 435 (473)
|++||+++|||||++|+++||+.||+++++.||+|+.+..++ +..++.++|.++|+++|.+++ +++.+|++|+++++
T Consensus 369 S~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~ 448 (480)
T PLN00164 369 SVLESLWHGVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKA 448 (480)
T ss_pred hHHHHHHcCCCEEeCCccccchhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 999999999999999999999999999877779999986411 124799999999999998864 48899999999999
Q ss_pred HHHHhhhhhhccCCChHHHHHHHHHHHHHh
Q 043168 436 IIKNAVRNEEKFKGSSVKAMEQFLDAALMM 465 (473)
Q Consensus 436 ~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~ 465 (473)
.+++|+ .+|||+.+++++|++++...
T Consensus 449 ~~~~a~----~~gGSS~~~l~~~v~~~~~~ 474 (480)
T PLN00164 449 ACRKAV----EEGGSSYAALQRLAREIRHG 474 (480)
T ss_pred HHHHHh----cCCCcHHHHHHHHHHHHHhc
Confidence 999999 99999999999999998753
No 16
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=1.7e-57 Score=452.11 Aligned_cols=426 Identities=25% Similarity=0.436 Sum_probs=312.6
Q ss_pred CCCceEEEEcCCCccCHHHHHHHHHHHHhCCC--cEEEEEcCCcch-hhhhh----cCCCCCCceEEeccCCCCCCCCCC
Q 043168 3 QRKENIVMFPLMAQGHIIPFLALALHLENTNR--YTITFVNTPSNL-KKLKS----SLPQNSSIHLREIPFDGIAHDLPP 75 (473)
Q Consensus 3 ~~~~~Il~~~~~~~GHv~P~l~LA~~L~~~rG--h~Vt~~~~~~~~-~~v~~----~~~~~~~~~~~~ip~~~~~~~l~~ 75 (473)
|++.||+++|+|++||++|++.||+.|+. +| ..|||++++.+. ..+.. .....++++|..+|... ..+.
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~lA~~La~-~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~---~~~~ 76 (468)
T PLN02207 1 MRNAELIFIPTPTVGHLVPFLEFARRLIE-QDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELE---EKPT 76 (468)
T ss_pred CCCcEEEEeCCcchhhHHHHHHHHHHHHh-CCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCC---CCCc
Confidence 45679999999999999999999999999 98 999999988765 22221 11101468999988321 1111
Q ss_pred CCCCCCCCCCCCchHHHHHHhhh----hHHHHHHHhhhhhccCCCCCeEEEeCCCcchHHHHHHHhCCcEEEEccccHHH
Q 043168 76 CTENSDSLPFHLFPNFFESTLSF----KPHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALFVGGGSFG 151 (473)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~l~~~~~~~~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~ 151 (473)
.. . ..+....+......+ .+.+.+++++.. .++++++|||+|.+++|+..+|+++|||++.+++++++.
T Consensus 77 ~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~ 149 (468)
T PLN02207 77 LG----G-TQSVEAYVYDVIEKNIPLVRNIVMDILSSLA--LDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGF 149 (468)
T ss_pred cc----c-ccCHHHHHHHHHHhcchhHHHHHHHHHHHhc--cCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHH
Confidence 00 0 111112333444444 334555554331 112134999999999999999999999999999999887
Q ss_pred HHHHHhhhhcC-CC--C--C-C-CCcccCCC-CCCcccchhhhhhhhhccCCCChHHHHHHHHhhhcccCceEEecchhh
Q 043168 152 FACFYSLWLNL-PH--R--D-S-DEFLLPDF-PEASRIHVTQMTKFLRLADGSDSLSVFFQKVLPQWMNADGILFNTVEE 223 (473)
Q Consensus 152 ~~~~~~~~~~~-p~--~--~-~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 223 (473)
+..+.+.+... +. . . . ..+.+|++ +. +...+++.++... +.. ..+.+......+++.+++||+++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vPgl~~~---l~~~dlp~~~~~~---~~~-~~~~~~~~~~~~~~~vlvNtf~~ 222 (468)
T PLN02207 150 LAMMQYLADRHSKDTSVFVRNSEEMLSIPGFVNP---VPANVLPSALFVE---DGY-DAYVKLAILFTKANGILVNSSFD 222 (468)
T ss_pred HHHHHHhhhccccccccCcCCCCCeEECCCCCCC---CChHHCcchhcCC---ccH-HHHHHHHHhcccCCEEEEEchHH
Confidence 77665443211 10 0 0 1 11446776 44 7777777665321 122 22334444567889999999999
Q ss_pred hccc----------------cCccccCCCCCCCCCCCCCCCchhhhhhhccCCCCceEEEEecCcccCCHHHHHHHHHHH
Q 043168 224 LDKI----------------VGPLLLSTGSRAGAGKEYGISTESCKNWLDTKPCNSVIYVSFGSQNTIAASQMMQLAMAL 287 (473)
Q Consensus 224 l~~~----------------vGp~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al 287 (473)
||++ |||+........ ........+++.+||++++++++|||||||....+.+++++++.+|
T Consensus 223 LE~~~~~~~~~~~~~p~v~~VGPl~~~~~~~~--~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l 300 (468)
T PLN02207 223 IEPYSVNHFLDEQNYPSVYAVGPIFDLKAQPH--PEQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGL 300 (468)
T ss_pred HhHHHHHHHHhccCCCcEEEecCCcccccCCC--CccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHH
Confidence 9874 777765331100 0000012357999999998889999999999999999999999999
Q ss_pred HhCCCcEEEEEcCCCCCCCccchhcccCCchhHHHhhccCCCCeEEecccChHHhhcccccceeeeccChhhHHHHHhcC
Q 043168 288 EACGKNFIWVVKPPLGFDLNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVEILSHKSISAFLSHCGWNSVLEALSHG 367 (473)
Q Consensus 288 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~~~I~HgG~gs~~eal~~G 367 (473)
+.++++|||++.... . . .. +.+|++|.++.. .+..+.+|+||.+||+|+++++|||||||||++||+++|
T Consensus 301 ~~~~~~flW~~r~~~---~--~-~~-~~lp~~f~er~~---~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~G 370 (468)
T PLN02207 301 ELCQYRFLWSLRTEE---V--T-ND-DLLPEGFLDRVS---GRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFG 370 (468)
T ss_pred HHCCCcEEEEEeCCC---c--c-cc-ccCCHHHHhhcC---CCeEEEEeCCHHHHhcccccceeeecCccccHHHHHHcC
Confidence 999999999998431 0 0 01 348889988774 455677999999999999999999999999999999999
Q ss_pred CCEEecccccchhhhHHHHHHHHcceEEEecc----cCCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHhhhh
Q 043168 368 VPIIGWPLAAEQFYNSKLLEEVIGVCVEVARG----MNCEVSKENLSAKFELVMNETEKGMDLRKKASEVEMIIKNAVRN 443 (473)
Q Consensus 368 vP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~----~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~~~~~~~~a~~~ 443 (473)
||||++|+++||+.||+++++.||+|+++..+ ....++.++|.++|+++|+++ ++.||+||+++++.+++|+
T Consensus 371 VP~l~~P~~~DQ~~Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~~--~~~~r~~a~~l~~~a~~A~-- 446 (468)
T PLN02207 371 VPIVTWPMYAEQQLNAFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNKD--NNVVRKRVMDISQMIQRAT-- 446 (468)
T ss_pred CCEEecCccccchhhHHHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHHh--
Confidence 99999999999999999998877999987421 113469999999999999732 5589999999999999999
Q ss_pred hhccCCChHHHHHHHHHHHHH
Q 043168 444 EEKFKGSSVKAMEQFLDAALM 464 (473)
Q Consensus 444 ~~~~~g~~~~~~~~~~~~~~~ 464 (473)
.+|||+.+++++|+++++.
T Consensus 447 --~~GGSS~~~l~~~v~~~~~ 465 (468)
T PLN02207 447 --KNGGSSFAAIEKFIHDVIG 465 (468)
T ss_pred --cCCCcHHHHHHHHHHHHHh
Confidence 9999999999999999875
No 17
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=2.6e-57 Score=448.93 Aligned_cols=424 Identities=30% Similarity=0.507 Sum_probs=320.6
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCC-CcEEEEEcCCcchhhhh--hcCCC---CCCceEEeccCCCCCCCCCCCCC
Q 043168 5 KENIVMFPLMAQGHIIPFLALALHLENTN-RYTITFVNTPSNLKKLK--SSLPQ---NSSIHLREIPFDGIAHDLPPCTE 78 (473)
Q Consensus 5 ~~~Il~~~~~~~GHv~P~l~LA~~L~~~r-Gh~Vt~~~~~~~~~~v~--~~~~~---~~~~~~~~ip~~~~~~~l~~~~~ 78 (473)
+.||+++|+|++||++|++.||+.|+. + |..|||++++.+...+. ....+ ..++++..+|++. .++++..
T Consensus 3 ~pHvvl~P~p~qGHi~P~l~LAk~La~-~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~-~~~l~~~-- 78 (470)
T PLN03015 3 QPHALLVASPGLGHLIPILELGNRLSS-VLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSVD-VDNLVEP-- 78 (470)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHh-CCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCCc-cccCCCC--
Confidence 569999999999999999999999997 6 99999999876554431 11110 0258899888652 1233110
Q ss_pred CCCCCCCCCchHHHHHHhhhhHHHHHHHhhhhhccCCCCCeEEEeCCCcchHHHHHHHhCCc-EEEEccccHHHHHHHHh
Q 043168 79 NSDSLPFHLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIF-NALFVGGGSFGFACFYS 157 (473)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~~~~~~~A~~~giP-~v~~~~~~~~~~~~~~~ 157 (473)
. ......+......+.+.+.++|++.. . +|+|||+|.+++|+..+|+++||| .+.++++.++.+..+.+
T Consensus 79 --~---~~~~~~~~~~~~~~~~~~~~~l~~l~----~-~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~ 148 (470)
T PLN03015 79 --D---ATIFTKMVVKMRAMKPAVRDAVKSMK----R-KPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVY 148 (470)
T ss_pred --C---ccHHHHHHHHHHhchHHHHHHHHhcC----C-CCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHh
Confidence 0 12223555666677888999998762 1 689999999999999999999999 57777777766655544
Q ss_pred hhhc---CCCC--C-CCCcccCCCCCCcccchhhhhhhhhccCCCChHHHHHHHHhhhcccCceEEecchhhhccc----
Q 043168 158 LWLN---LPHR--D-SDEFLLPDFPEASRIHVTQMTKFLRLADGSDSLSVFFQKVLPQWMNADGILFNTVEELDKI---- 227 (473)
Q Consensus 158 ~~~~---~p~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~---- 227 (473)
.+.. .+.. . .+.+.+|+++. +...+++..+.... ...+..+. ........++.+++|||.+||+.
T Consensus 149 l~~~~~~~~~~~~~~~~~~~vPg~p~---l~~~dlp~~~~~~~-~~~~~~~~-~~~~~~~~a~gvlvNTf~eLE~~~~~~ 223 (470)
T PLN03015 149 LPVLDTVVEGEYVDIKEPLKIPGCKP---VGPKELMETMLDRS-DQQYKECV-RSGLEVPMSDGVLVNTWEELQGNTLAA 223 (470)
T ss_pred hhhhhcccccccCCCCCeeeCCCCCC---CChHHCCHhhcCCC-cHHHHHHH-HHHHhcccCCEEEEechHHHhHHHHHH
Confidence 3211 1110 1 12245677776 77777776554322 11233333 33345778999999999999874
Q ss_pred -----------------cCccccCCCCCCCCCCCCCCCchhhhhhhccCCCCceEEEEecCcccCCHHHHHHHHHHHHhC
Q 043168 228 -----------------VGPLLLSTGSRAGAGKEYGISTESCKNWLDTKPCNSVIYVSFGSQNTIAASQMMQLAMALEAC 290 (473)
Q Consensus 228 -----------------vGp~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~ 290 (473)
|||+.... . ....++++.+||++++++++|||||||....+.+++++++.+|+.+
T Consensus 224 l~~~~~~~~~~~~~v~~VGPl~~~~-------~-~~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s 295 (470)
T PLN03015 224 LREDMELNRVMKVPVYPIGPIVRTN-------V-HVEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELS 295 (470)
T ss_pred HHhhcccccccCCceEEecCCCCCc-------c-cccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhC
Confidence 45554321 0 0112347999999998899999999999999999999999999999
Q ss_pred CCcEEEEEcCCCCCC--C--ccchhcccCCchhHHHhhccCCCCeEEecccChHHhhcccccceeeeccChhhHHHHHhc
Q 043168 291 GKNFIWVVKPPLGFD--L--NSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVEILSHKSISAFLSHCGWNSVLEALSH 366 (473)
Q Consensus 291 ~~~~i~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~~~I~HgG~gs~~eal~~ 366 (473)
+++|||++..+..+. . +.+... +.+|++|.+++. ..++++.+|+||.+||+|+++++|||||||||++|++++
T Consensus 296 ~~~FlWv~r~~~~~~~~~~~~~~~~~-~~lp~~f~er~~--~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~ 372 (470)
T PLN03015 296 GQRFVWVLRRPASYLGASSSDDDQVS-ASLPEGFLDRTR--GVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTK 372 (470)
T ss_pred CCcEEEEEecCccccccccccccchh-hcCChHHHHhhc--cCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHc
Confidence 999999996431100 0 000011 248999999987 888888899999999999999999999999999999999
Q ss_pred CCCEEecccccchhhhHHHHHHHHcceEEEec-ccCCccCHHHHHHHHHHHHcC-ChhhHHHHHHHHHHHHHHHHhhhhh
Q 043168 367 GVPIIGWPLAAEQFYNSKLLEEVIGVCVEVAR-GMNCEVSKENLSAKFELVMNE-TEKGMDLRKKASEVEMIIKNAVRNE 444 (473)
Q Consensus 367 GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~-~~~~~~~~~~l~~ai~~~l~~-~~~~~~~~~~a~~~~~~~~~a~~~~ 444 (473)
|||||++|++.||+.||+++++.||+|+++.. +....++.++|.++|+++|.+ .++|+.+|+||+++++..++|+
T Consensus 373 GvP~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av--- 449 (470)
T PLN03015 373 GVPIVAWPLYAEQWMNATLLTEEIGVAVRTSELPSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAW--- 449 (470)
T ss_pred CCCEEecccccchHHHHHHHHHHhCeeEEecccccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHh---
Confidence 99999999999999999999878899999952 112368999999999999963 2368899999999999999999
Q ss_pred hccCCChHHHHHHHHHHH
Q 043168 445 EKFKGSSVKAMEQFLDAA 462 (473)
Q Consensus 445 ~~~~g~~~~~~~~~~~~~ 462 (473)
++|||+.+++++|++++
T Consensus 450 -~eGGSS~~nl~~~~~~~ 466 (470)
T PLN03015 450 -SHGGSSYNSLFEWAKRC 466 (470)
T ss_pred -cCCCcHHHHHHHHHHhc
Confidence 99999999999999875
No 18
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=5.3e-57 Score=453.90 Aligned_cols=417 Identities=27% Similarity=0.431 Sum_probs=313.7
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCC--CcEEEEEcCCcchhhhhhcCCCCCCceEEeccCCCCCCCCCCCCCCCC
Q 043168 4 RKENIVMFPLMAQGHIIPFLALALHLENTN--RYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSD 81 (473)
Q Consensus 4 ~~~~Il~~~~~~~GHv~P~l~LA~~L~~~r--Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~ip~~~~~~~l~~~~~~~~ 81 (473)
.+.||+++|+|++||++|++.||++|+. + ||+|||++++.+...+...... .+++|..+|. +++......
T Consensus 9 ~~~hVvlvp~pa~GHi~P~l~LA~~L~~-~~~G~~VT~~~t~~~~~~i~~~~~~-~gi~fv~lp~-----~~p~~~~~~- 80 (459)
T PLN02448 9 TSCHVVAMPYPGRGHINPMMNLCKLLAS-RKPDILITFVVTEEWLGLIGSDPKP-DNIRFATIPN-----VIPSELVRA- 80 (459)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHc-CCCCcEEEEEeCCchHhHhhccCCC-CCEEEEECCC-----CCCCccccc-
Confidence 4679999999999999999999999999 9 9999999999988887764321 4689988872 333321111
Q ss_pred CCCCCCchHHHHHH-hhhhHHHHHHHhhhhhccCCCCCeEEEeCCCcchHHHHHHHhCCcEEEEccccHHHHHHHHhhhh
Q 043168 82 SLPFHLFPNFFEST-LSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALFVGGGSFGFACFYSLWL 160 (473)
Q Consensus 82 ~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~ 160 (473)
.....++..+ ..+.+.+.+++++.. .++|+||+|.+++|+..+|+++|||++.+++.++..+..+.+...
T Consensus 81 ----~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~ 151 (459)
T PLN02448 81 ----ADFPGFLEAVMTKMEAPFEQLLDRLE-----PPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDL 151 (459)
T ss_pred ----cCHHHHHHHHHHHhHHHHHHHHHhcC-----CCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhh
Confidence 1122333332 356677778877642 168999999999999999999999999999999876665544321
Q ss_pred cC-----CCCC---CCC--cccCCCCCCcccchhhhhhhhhccCCCChHHHHHHHHhhhcccCceEEecchhhhccc---
Q 043168 161 NL-----PHRD---SDE--FLLPDFPEASRIHVTQMTKFLRLADGSDSLSVFFQKVLPQWMNADGILFNTVEELDKI--- 227 (473)
Q Consensus 161 ~~-----p~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~--- 227 (473)
.. |... .+. ..+|+++. +...+++.++... .....+.+.........++.+++||+.+||+.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~iPg~~~---l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~ 226 (459)
T PLN02448 152 LPQNGHFPVELSESGEERVDYIPGLSS---TRLSDLPPIFHGN--SRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAID 226 (459)
T ss_pred hhhccCCCCccccccCCccccCCCCCC---CChHHCchhhcCC--chHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHH
Confidence 11 1110 011 12555554 5556666554322 12223333344444566789999999999887
Q ss_pred ------------cCccccCCCCCCCCCC-CCCCCchhhhhhhccCCCCceEEEEecCcccCCHHHHHHHHHHHHhCCCcE
Q 043168 228 ------------VGPLLLSTGSRAGAGK-EYGISTESCKNWLDTKPCNSVIYVSFGSQNTIAASQMMQLAMALEACGKNF 294 (473)
Q Consensus 228 ------------vGp~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~ 294 (473)
|||+.+.......... .....+.++.+|++.++++++|||||||....+.+++++++.+|+..+++|
T Consensus 227 ~l~~~~~~~~~~iGP~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~ 306 (459)
T PLN02448 227 ALKSKFPFPVYPIGPSIPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRF 306 (459)
T ss_pred HHHhhcCCceEEecCcccccccCCCccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCE
Confidence 8888754211100000 001112478899999888899999999998888999999999999999999
Q ss_pred EEEEcCCCCCCCccchhcccCCchhHHHhhccCCCCeEEecccChHHhhcccccceeeeccChhhHHHHHhcCCCEEecc
Q 043168 295 IWVVKPPLGFDLNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVEILSHKSISAFLSHCGWNSVLEALSHGVPIIGWP 374 (473)
Q Consensus 295 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~i~~P 374 (473)
||++.... .++.++. +.|+.+.+|+||.+||+|+++++|||||||||++||+++|||||++|
T Consensus 307 lw~~~~~~---------------~~~~~~~---~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P 368 (459)
T PLN02448 307 LWVARGEA---------------SRLKEIC---GDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFP 368 (459)
T ss_pred EEEEcCch---------------hhHhHhc---cCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEecc
Confidence 99875321 1333332 35677789999999999999999999999999999999999999999
Q ss_pred cccchhhhHHHHHHHHcceEEEecc--cCCccCHHHHHHHHHHHHcCC-hhhHHHHHHHHHHHHHHHHhhhhhhccCCCh
Q 043168 375 LAAEQFYNSKLLEEVIGVCVEVARG--MNCEVSKENLSAKFELVMNET-EKGMDLRKKASEVEMIIKNAVRNEEKFKGSS 451 (473)
Q Consensus 375 ~~~DQ~~~a~~v~~~lG~G~~l~~~--~~~~~~~~~l~~ai~~~l~~~-~~~~~~~~~a~~~~~~~~~a~~~~~~~~g~~ 451 (473)
+..||+.||+++++.||+|+.+... +...+++++|+++|+++|.++ ++++.||++|+++++.+++|+ .+|||+
T Consensus 369 ~~~DQ~~na~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~----~~gGss 444 (459)
T PLN02448 369 LFWDQPLNSKLIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAI----AKGGSS 444 (459)
T ss_pred ccccchhhHHHHHHHhCceEEEecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh----cCCCcH
Confidence 9999999999999878999998641 123579999999999999874 478899999999999999999 999999
Q ss_pred HHHHHHHHHHHHH
Q 043168 452 VKAMEQFLDAALM 464 (473)
Q Consensus 452 ~~~~~~~~~~~~~ 464 (473)
.+++++|++++..
T Consensus 445 ~~~l~~~v~~~~~ 457 (459)
T PLN02448 445 DTNLDAFIRDISQ 457 (459)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999875
No 19
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=2.5e-57 Score=449.53 Aligned_cols=418 Identities=27% Similarity=0.490 Sum_probs=309.3
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCC----cEEEEEcCCcchhhhh----hcCCCCCCceEEeccCCCCCCCCCC
Q 043168 4 RKENIVMFPLMAQGHIIPFLALALHLENTNR----YTITFVNTPSNLKKLK----SSLPQNSSIHLREIPFDGIAHDLPP 75 (473)
Q Consensus 4 ~~~~Il~~~~~~~GHv~P~l~LA~~L~~~rG----h~Vt~~~~~~~~~~v~----~~~~~~~~~~~~~ip~~~~~~~l~~ 75 (473)
.+.||+++|+|++||++|++.||+.|+. +| ..||+++++.+...+. ......++++|..+|.+. +.+.
T Consensus 2 ~~~Hvvl~P~p~qGHi~P~l~LA~~La~-~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~---~~~~ 77 (451)
T PLN03004 2 GEEAIVLYPAPPIGHLVSMVELGKTILS-KNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVT---PYSS 77 (451)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHh-CCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCC---CCCC
Confidence 4669999999999999999999999999 98 4455566554333222 111111468999888541 1111
Q ss_pred CCCCCCCCCCCCchHHHHHHhhhhHHHHHHHhhhhhccCCCCCeEEEeCCCcchHHHHHHHhCCcEEEEccccHHHHHHH
Q 043168 76 CTENSDSLPFHLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALFVGGGSFGFACF 155 (473)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~ 155 (473)
... .. ......+........+.+.+++++... +.++++||+|.+++|+..+|+++|||++.+++++++.+..+
T Consensus 78 ~~~--~~--~~~~~~~~~~~~~~~~~~~~~l~~l~~---~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~ 150 (451)
T PLN03004 78 SST--SR--HHHESLLLEILCFSNPSVHRTLFSLSR---NFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFS 150 (451)
T ss_pred ccc--cc--cCHHHHHHHHHHhhhHHHHHHHHhcCC---CCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHH
Confidence 111 11 111123444445666777888876521 11459999999999999999999999999999999888877
Q ss_pred HhhhhcC---CCCC-C--CCcccCCCCCCcccchhhhhhhhhccCCCChHHHHHHHHhhhcccCceEEecchhhhccc--
Q 043168 156 YSLWLNL---PHRD-S--DEFLLPDFPEASRIHVTQMTKFLRLADGSDSLSVFFQKVLPQWMNADGILFNTVEELDKI-- 227 (473)
Q Consensus 156 ~~~~~~~---p~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~-- 227 (473)
.+.+... +... . ....+|+++. +...+++..++... .....++.........++.+++|||.+||..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~v~iPg~p~---l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l 225 (451)
T PLN03004 151 FYLPTIDETTPGKNLKDIPTVHIPGVPP---MKGSDMPKAVLERD--DEVYDVFIMFGKQLSKSSGIIINTFDALENRAI 225 (451)
T ss_pred HHHHhccccccccccccCCeecCCCCCC---CChHHCchhhcCCc--hHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHH
Confidence 6543211 1111 1 1245677776 67777776654322 2233344444445667889999999999984
Q ss_pred --------------cCccccCCCCCCCCCCCCCCCchhhhhhhccCCCCceEEEEecCcccCCHHHHHHHHHHHHhCCCc
Q 043168 228 --------------VGPLLLSTGSRAGAGKEYGISTESCKNWLDTKPCNSVIYVSFGSQNTIAASQMMQLAMALEACGKN 293 (473)
Q Consensus 228 --------------vGp~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~ 293 (473)
|||+........ . ....+.++.+||++++++++|||||||...++.+++++++.+|+.++.+
T Consensus 226 ~~l~~~~~~~~v~~vGPl~~~~~~~~---~-~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~ 301 (451)
T PLN03004 226 KAITEELCFRNIYPIGPLIVNGRIED---R-NDNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQR 301 (451)
T ss_pred HHHHhcCCCCCEEEEeeeccCccccc---c-ccchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCC
Confidence 788874320000 0 0112356899999998889999999999999999999999999999999
Q ss_pred EEEEEcCCCCCCCc-cchhcccCCchhHHHhhccCCCCeEEecccChHHhhcccccceeeeccChhhHHHHHhcCCCEEe
Q 043168 294 FIWVVKPPLGFDLN-SEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVEILSHKSISAFLSHCGWNSVLEALSHGVPIIG 372 (473)
Q Consensus 294 ~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~i~ 372 (473)
|||++....+.+.+ .+. . ..+|++|.++.+ ..|+++.+|+||.+||+|+++++|||||||||++||+++|||||+
T Consensus 302 FlW~~r~~~~~~~~~~~~-~-~~lp~gf~er~~--~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~ 377 (451)
T PLN03004 302 FLWVVRNPPELEKTELDL-K-SLLPEGFLSRTE--DKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVA 377 (451)
T ss_pred EEEEEcCCccccccccch-h-hhCChHHHHhcc--CCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEe
Confidence 99999853100000 001 1 238899999988 889999999999999999999999999999999999999999999
Q ss_pred cccccchhhhHHHHHHHHcceEEEecccCCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHhhhhhhccCCChH
Q 043168 373 WPLAAEQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAKFELVMNETEKGMDLRKKASEVEMIIKNAVRNEEKFKGSSV 452 (473)
Q Consensus 373 ~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~~~~~~~~a~~~~~~~~g~~~ 452 (473)
+|++.||+.||+++++.||+|+.+..++...++.++|+++|+++|+|+ .||++++++++..++|+ .+|||+.
T Consensus 378 ~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~e~l~~av~~vm~~~----~~r~~a~~~~~~a~~Av----~~GGSS~ 449 (451)
T PLN03004 378 WPLYAEQRFNRVMIVDEIKIAISMNESETGFVSSTEVEKRVQEIIGEC----PVRERTMAMKNAAELAL----TETGSSH 449 (451)
T ss_pred ccccccchhhHHHHHHHhCceEEecCCcCCccCHHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHh----cCCCCCC
Confidence 999999999999999777999999752113579999999999999988 89999999999999999 9999876
Q ss_pred H
Q 043168 453 K 453 (473)
Q Consensus 453 ~ 453 (473)
+
T Consensus 450 ~ 450 (451)
T PLN03004 450 T 450 (451)
T ss_pred C
Confidence 4
No 20
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=3.4e-56 Score=449.59 Aligned_cols=426 Identities=28% Similarity=0.443 Sum_probs=308.5
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCC--cEEEEEcCCcchhhh-------hhcCCC-CCCceEEeccCCCCCCCC
Q 043168 4 RKENIVMFPLMAQGHIIPFLALALHLENTNR--YTITFVNTPSNLKKL-------KSSLPQ-NSSIHLREIPFDGIAHDL 73 (473)
Q Consensus 4 ~~~~Il~~~~~~~GHv~P~l~LA~~L~~~rG--h~Vt~~~~~~~~~~v-------~~~~~~-~~~~~~~~ip~~~~~~~l 73 (473)
+|.||+++|+|++||++|++.||+.|+. +| ..|||++++.+...+ .+.... .++++|..+|.+.
T Consensus 1 ~~~hvvl~P~paqGHi~P~l~LAk~La~-~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~----- 74 (481)
T PLN02554 1 MKIELVFIPSPGIGHLRPTVELAKLLVD-SDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGD----- 74 (481)
T ss_pred CceEEEEeCCcchhhHHHHHHHHHHHHh-CCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCC-----
Confidence 3679999999999999999999999999 98 889999998765421 111000 1468999888541
Q ss_pred CCCCCCCCCCCCCCchHHHHHHhhhhHHHHHHHhhhhhc---cCCCCCeEEEeCCCcchHHHHHHHhCCcEEEEccccHH
Q 043168 74 PPCTENSDSLPFHLFPNFFESTLSFKPHFRKLINGLIDE---QNGHKPVCIIADMFFAWSAEIAQEYGIFNALFVGGGSF 150 (473)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---~~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~ 150 (473)
+.. ... ..+...+..+.+.+.+.+++.... .++++.+|||+|.+++|+..+|+++|||++.|++++++
T Consensus 75 ~~~----~~~-----~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~ 145 (481)
T PLN02554 75 QPT----TED-----PTFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNAT 145 (481)
T ss_pred CCc----ccc-----hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHH
Confidence 111 000 122223334444444444443211 01212389999999999999999999999999999999
Q ss_pred HHHHHHhhhhcC-----CCCC---C-CCcccCCCC-CCcccchhhhhhhhhccCCCChHHHHHHHHhhhcccCceEEecc
Q 043168 151 GFACFYSLWLNL-----PHRD---S-DEFLLPDFP-EASRIHVTQMTKFLRLADGSDSLSVFFQKVLPQWMNADGILFNT 220 (473)
Q Consensus 151 ~~~~~~~~~~~~-----p~~~---~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 220 (473)
.+..+.+.+... +... . ..+.+|+++ . ++..+++..+.. +.....+.........++.+++|+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iPgl~~p---l~~~dlp~~~~~----~~~~~~~~~~~~~~~~~~gvlvNt 218 (481)
T PLN02554 146 FLGLQLHVQMLYDEKKYDVSELEDSEVELDVPSLTRP---YPVKCLPSVLLS----KEWLPLFLAQARRFREMKGILVNT 218 (481)
T ss_pred HHHHHHhhhhhccccccCccccCCCCceeECCCCCCC---CCHHHCCCcccC----HHHHHHHHHHHHhcccCCEEEEec
Confidence 888876654321 1001 1 123466663 2 455555543321 122333344445567789999999
Q ss_pred hhhhccc-----------------cCccccCCCCCCCCCCCCCCCchhhhhhhccCCCCceEEEEecCcccCCHHHHHHH
Q 043168 221 VEELDKI-----------------VGPLLLSTGSRAGAGKEYGISTESCKNWLDTKPCNSVIYVSFGSQNTIAASQMMQL 283 (473)
Q Consensus 221 ~~~l~~~-----------------vGp~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~ 283 (473)
+.+||.. |||+........ ......+.++.+||++++++++|||||||....+.++++++
T Consensus 219 ~~eLe~~~~~~l~~~~~~~~~v~~vGpl~~~~~~~~---~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~l 295 (481)
T PLN02554 219 VAELEPQALKFFSGSSGDLPPVYPVGPVLHLENSGD---DSKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREI 295 (481)
T ss_pred hHHHhHHHHHHHHhcccCCCCEEEeCCCcccccccc---ccccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHH
Confidence 9999873 888843221100 00012456899999999888899999999988899999999
Q ss_pred HHHHHhCCCcEEEEEcCCCCCCCcc---c-hhcccCCchhHHHhhccCCCCeEEecccChHHhhcccccceeeeccChhh
Q 043168 284 AMALEACGKNFIWVVKPPLGFDLNS---E-FRANEWLPEGFEERIKDSGQGLVVQKWAPQVEILSHKSISAFLSHCGWNS 359 (473)
Q Consensus 284 ~~al~~~~~~~i~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~~~I~HgG~gs 359 (473)
+.+|+.++++|||++.......... + .+..+.+|++|.++.. +|+.+.+|+||.+||+|++|++|||||||||
T Consensus 296 a~~l~~~~~~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~~---~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS 372 (481)
T PLN02554 296 AIALERSGHRFLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDRTK---DIGKVIGWAPQVAVLAKPAIGGFVTHCGWNS 372 (481)
T ss_pred HHHHHHcCCCeEEEEcCCcccccccccccccchhhhCChHHHHHhc---cCceEEeeCCHHHHhCCcccCcccccCccch
Confidence 9999999999999997531000000 0 0000236888888774 5566679999999999999999999999999
Q ss_pred HHHHHhcCCCEEecccccchhhhHHHHHHHHcceEEEecc--------cCCccCHHHHHHHHHHHHc-CChhhHHHHHHH
Q 043168 360 VLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARG--------MNCEVSKENLSAKFELVMN-ETEKGMDLRKKA 430 (473)
Q Consensus 360 ~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~--------~~~~~~~~~l~~ai~~~l~-~~~~~~~~~~~a 430 (473)
++||+++|||||++|+++||+.||+++++.||+|+.+... ....++.++|.++|+++|+ |+ .||+||
T Consensus 373 ~~Ea~~~GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~~----~~r~~a 448 (481)
T PLN02554 373 ILESLWFGVPMAAWPLYAEQKFNAFEMVEELGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQDS----DVRKRV 448 (481)
T ss_pred HHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEeeccccccccccccCeEcHHHHHHHHHHHhcCCH----HHHHHH
Confidence 9999999999999999999999996654466999998631 1236899999999999997 56 899999
Q ss_pred HHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHh
Q 043168 431 SEVEMIIKNAVRNEEKFKGSSVKAMEQFLDAALMM 465 (473)
Q Consensus 431 ~~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~ 465 (473)
+++++.+++|+ .+|||+.+++++|++++..+
T Consensus 449 ~~l~~~~~~av----~~gGss~~~l~~lv~~~~~~ 479 (481)
T PLN02554 449 KEMSEKCHVAL----MDGGSSHTALKKFIQDVTKN 479 (481)
T ss_pred HHHHHHHHHHh----cCCChHHHHHHHHHHHHHhh
Confidence 99999999999 99999999999999998764
No 21
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.2e-54 Score=437.73 Aligned_cols=431 Identities=29% Similarity=0.461 Sum_probs=306.4
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCc---EEEEEcCCcch-----hhhhhcCCCCCCceEEeccCCCCCCCCCC
Q 043168 4 RKENIVMFPLMAQGHIIPFLALALHLENTNRY---TITFVNTPSNL-----KKLKSSLPQNSSIHLREIPFDGIAHDLPP 75 (473)
Q Consensus 4 ~~~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh---~Vt~~~~~~~~-----~~v~~~~~~~~~~~~~~ip~~~~~~~l~~ 75 (473)
++.||+++|+|++||++|++.||+.|.. +|. .||+++++.+. ..+.......++|+|..+|.+. . +.
T Consensus 2 ~~~hVv~~PfpaqGHi~P~l~LAk~La~-~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~---~-p~ 76 (475)
T PLN02167 2 KEAELIFVPFPSTGHILVTIEFAKRLIN-LDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQ---D-PP 76 (475)
T ss_pred CccEEEEeCChhhhhHHHHHHHHHHHHh-CCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCC---C-Cc
Confidence 4669999999999999999999999999 983 56776654322 1122211101468999988542 1 21
Q ss_pred CCCCCCCCCCCCchHHHHHHhhhhHHHHHHHhhhhhc--cCCC-CCeEEEeCCCcchHHHHHHHhCCcEEEEccccHHHH
Q 043168 76 CTENSDSLPFHLFPNFFESTLSFKPHFRKLINGLIDE--QNGH-KPVCIIADMFFAWSAEIAQEYGIFNALFVGGGSFGF 152 (473)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~-~pDlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~ 152 (473)
....... .....+......+.+.+.+++++.... .++. +++|||+|.+++|+..+|+++|||++.|++++++.+
T Consensus 77 ~~~~~~~---~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~ 153 (475)
T PLN02167 77 PMELFVK---ASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFL 153 (475)
T ss_pred ccccccc---chHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHH
Confidence 1110000 011234444455556666666654221 1121 349999999999999999999999999999999887
Q ss_pred HHHHhhhhc---CCCC--C---CCCcccCCCCCCcccchhhhhhhhhccCCCChHHHHHHHHhhhcccCceEEecchhhh
Q 043168 153 ACFYSLWLN---LPHR--D---SDEFLLPDFPEASRIHVTQMTKFLRLADGSDSLSVFFQKVLPQWMNADGILFNTVEEL 224 (473)
Q Consensus 153 ~~~~~~~~~---~p~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 224 (473)
..+.+.+.. .+.. . .+.+.+|+++.. ++..+++..+... . ....+.........++.+++|||.+|
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iPgl~~~--l~~~dlp~~~~~~---~-~~~~~~~~~~~~~~a~~vlvNTf~eL 227 (475)
T PLN02167 154 GMMKYLPERHRKTASEFDLSSGEEELPIPGFVNS--VPTKVLPPGLFMK---E-SYEAWVEIAERFPEAKGILVNSFTEL 227 (475)
T ss_pred HHHHHHHHhccccccccccCCCCCeeECCCCCCC--CChhhCchhhhCc---c-hHHHHHHHHHhhcccCEeeeccHHHH
Confidence 776644321 1100 0 122446776311 4555555433321 1 12223333345677889999999999
Q ss_pred ccc-----------------cCccccCCCCCCCCCCCCCCCchhhhhhhccCCCCceEEEEecCcccCCHHHHHHHHHHH
Q 043168 225 DKI-----------------VGPLLLSTGSRAGAGKEYGISTESCKNWLDTKPCNSVIYVSFGSQNTIAASQMMQLAMAL 287 (473)
Q Consensus 225 ~~~-----------------vGp~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al 287 (473)
|+. |||+.+...... ... ......++.+||++++++++|||||||....+.+++.+++.+|
T Consensus 228 E~~~~~~l~~~~~~~p~v~~vGpl~~~~~~~~-~~~-~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l 305 (475)
T PLN02167 228 EPNAFDYFSRLPENYPPVYPVGPILSLKDRTS-PNL-DSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQAL 305 (475)
T ss_pred HHHHHHHHHhhcccCCeeEEeccccccccccC-CCC-CcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHH
Confidence 874 778765321000 000 0112357999999998889999999999888999999999999
Q ss_pred HhCCCcEEEEEcCCCCCCCccchhcccCCchhHHHhhccCCCCeEEecccChHHhhcccccceeeeccChhhHHHHHhcC
Q 043168 288 EACGKNFIWVVKPPLGFDLNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVEILSHKSISAFLSHCGWNSVLEALSHG 367 (473)
Q Consensus 288 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~~~I~HgG~gs~~eal~~G 367 (473)
+.++++|||+++..... ..+.. ..+|++|.+++. ..+ .+.+|+||.+||+|++|++|||||||||++||+++|
T Consensus 306 ~~~~~~flw~~~~~~~~-~~~~~---~~lp~~~~er~~--~rg-~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~G 378 (475)
T PLN02167 306 ELVGCRFLWSIRTNPAE-YASPY---EPLPEGFMDRVM--GRG-LVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFG 378 (475)
T ss_pred HhCCCcEEEEEecCccc-ccchh---hhCChHHHHHhc--cCe-eeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcC
Confidence 99999999999753100 00001 238889988875 444 556999999999999999999999999999999999
Q ss_pred CCEEecccccchhhhHHHHHHHHcceEEEecc----cCCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHhhhh
Q 043168 368 VPIIGWPLAAEQFYNSKLLEEVIGVCVEVARG----MNCEVSKENLSAKFELVMNETEKGMDLRKKASEVEMIIKNAVRN 443 (473)
Q Consensus 368 vP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~----~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~~~~~~~~a~~~ 443 (473)
||||++|+++||+.||+++++.||+|+.+... +...++.++|.++|+++|.++ . .||++|+++++.+++|+
T Consensus 379 vP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~-~--~~r~~a~~~~~~~~~av-- 453 (475)
T PLN02167 379 VPIATWPMYAEQQLNAFTMVKELGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGE-D--VPRKKVKEIAEAARKAV-- 453 (475)
T ss_pred CCEEeccccccchhhHHHHHHHhCeeEEeecccccccCCcccHHHHHHHHHHHhcCC-H--HHHHHHHHHHHHHHHHH--
Confidence 99999999999999998866566999998641 012579999999999999764 1 79999999999999999
Q ss_pred hhccCCChHHHHHHHHHHHHH
Q 043168 444 EEKFKGSSVKAMEQFLDAALM 464 (473)
Q Consensus 444 ~~~~~g~~~~~~~~~~~~~~~ 464 (473)
.+|||+.+++++|++++..
T Consensus 454 --~~gGsS~~~l~~~v~~i~~ 472 (475)
T PLN02167 454 --MDGGSSFVAVKRFIDDLLG 472 (475)
T ss_pred --hCCCcHHHHHHHHHHHHHh
Confidence 9999999999999998764
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=1.9e-46 Score=379.77 Aligned_cols=386 Identities=18% Similarity=0.236 Sum_probs=267.8
Q ss_pred ceEEEE-cCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhhcCCCCCCceEEeccCCCCCCCCCCCCCCCCC--
Q 043168 6 ENIVMF-PLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDS-- 82 (473)
Q Consensus 6 ~~Il~~-~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~ip~~~~~~~l~~~~~~~~~-- 82 (473)
.||+++ |.++.+|..-+-+|+++|++ |||+||++++.... ....... .+++.+.++.. .+...........
T Consensus 21 ~kIl~~~P~~~~SH~~~~~~l~~~La~-rGH~VTvi~p~~~~-~~~~~~~--~~~~~i~~~~~--~~~~~~~~~~~~~~~ 94 (507)
T PHA03392 21 ARILAVFPTPAYSHHSVFKVYVEALAE-RGHNVTVIKPTLRV-YYASHLC--GNITEIDASLS--VEYFKKLVKSSAVFR 94 (507)
T ss_pred ccEEEEcCCCCCcHHHHHHHHHHHHHH-cCCeEEEEeccccc-ccccCCC--CCEEEEEcCCC--hHHHHHHHhhhhHHH
Confidence 478766 77899999999999999999 99999999864311 1111011 44555544321 0110000000000
Q ss_pred ---CCCCCc---hHH----HHHHh-h-hhHHHHHHHh--hhhhccCCCCCeEEEeCCCcchHHHHHHHh-CCcEEEEccc
Q 043168 83 ---LPFHLF---PNF----FESTL-S-FKPHFRKLIN--GLIDEQNGHKPVCIIADMFFAWSAEIAQEY-GIFNALFVGG 147 (473)
Q Consensus 83 ---~~~~~~---~~~----~~~~~-~-~~~~l~~~l~--~~~~~~~~~~pDlVI~D~~~~~~~~~A~~~-giP~v~~~~~ 147 (473)
...... ... ....+ . ..+.+.++|+ +. ++|+||+|.+..|+..+|+.+ ++|.|.++++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~-------kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~ 167 (507)
T PHA03392 95 KRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKNN-------KFDLLVTEAFLDYPLVFSHLFGDAPVIQISSG 167 (507)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCC-------ceeEEEecccchhHHHHHHHhCCCCEEEEcCC
Confidence 000000 000 11111 1 1234566665 44 899999999888999999999 9999988775
Q ss_pred cHHHHH----H-HHhhhhcCCCCC---CCCcccCCCCCCcccchhhhhhhhh-ccCCCChHHHHHH----HHhhhcccCc
Q 043168 148 GSFGFA----C-FYSLWLNLPHRD---SDEFLLPDFPEASRIHVTQMTKFLR-LADGSDSLSVFFQ----KVLPQWMNAD 214 (473)
Q Consensus 148 ~~~~~~----~-~~~~~~~~p~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~ 214 (473)
...... . .+.+++|+|... ++.|.+..+-.+..........+.. .....+...+.+. ...+...+.+
T Consensus 168 ~~~~~~~~~~gg~p~~~syvP~~~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~~~~l~~~~~ 247 (507)
T PHA03392 168 YGLAENFETMGAVSRHPVYYPNLWRSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDTPTIRELRNRVQ 247 (507)
T ss_pred CCchhHHHhhccCCCCCeeeCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCHHHHHhCCc
Confidence 543221 2 345566777644 5566666554432211111110000 0001111222221 1334556778
Q ss_pred eEEecchhhhccc---------cCccccCCCCCCCCCCCCCCCchhhhhhhccCCCCceEEEEecCccc---CCHHHHHH
Q 043168 215 GILFNTVEELDKI---------VGPLLLSTGSRAGAGKEYGISTESCKNWLDTKPCNSVIYVSFGSQNT---IAASQMMQ 282 (473)
Q Consensus 215 ~~l~~~~~~l~~~---------vGp~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~---~~~~~~~~ 282 (473)
.+++|+.+.++++ |||+..+. .+..++++++.+|++..+ +++|||||||... .+.++++.
T Consensus 248 l~lvns~~~~d~~rp~~p~v~~vGgi~~~~-------~~~~~l~~~l~~fl~~~~-~g~V~vS~GS~~~~~~~~~~~~~~ 319 (507)
T PHA03392 248 LLFVNVHPVFDNNRPVPPSVQYLGGLHLHK-------KPPQPLDDYLEEFLNNST-NGVVYVSFGSSIDTNDMDNEFLQM 319 (507)
T ss_pred EEEEecCccccCCCCCCCCeeeecccccCC-------CCCCCCCHHHHHHHhcCC-CcEEEEECCCCCcCCCCCHHHHHH
Confidence 9999999999998 66665432 112457889999999874 5799999999863 46789999
Q ss_pred HHHHHHhCCCcEEEEEcCCCCCCCccchhcccCCchhHHHhhccCCCCeEEecccChHHhhcccccceeeeccChhhHHH
Q 043168 283 LAMALEACGKNFIWVVKPPLGFDLNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVEILSHKSISAFLSHCGWNSVLE 362 (473)
Q Consensus 283 ~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~~~I~HgG~gs~~e 362 (473)
+++++++.+.+|||+.+... .+.+. ++|+.+.+|+||.++|+|++|++||||||+||++|
T Consensus 320 ~l~a~~~l~~~viw~~~~~~-------------~~~~~-------p~Nv~i~~w~Pq~~lL~hp~v~~fItHGG~~s~~E 379 (507)
T PHA03392 320 LLRTFKKLPYNVLWKYDGEV-------------EAINL-------PANVLTQKWFPQRAVLKHKNVKAFVTQGGVQSTDE 379 (507)
T ss_pred HHHHHHhCCCeEEEEECCCc-------------CcccC-------CCceEEecCCCHHHHhcCCCCCEEEecCCcccHHH
Confidence 99999999999999987541 11111 78999999999999999999999999999999999
Q ss_pred HHhcCCCEEecccccchhhhHHHHHHHHcceEEEecccCCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHh
Q 043168 363 ALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAKFELVMNETEKGMDLRKKASEVEMIIKNA 440 (473)
Q Consensus 363 al~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~~~~~~~~a 440 (473)
|+++|||+|++|+.+||+.||+|+++. |+|+.+++ ..++.++|.++|+++|+|+ +|+++|+++++.+++.
T Consensus 380 al~~GvP~v~iP~~~DQ~~Na~rv~~~-G~G~~l~~---~~~t~~~l~~ai~~vl~~~----~y~~~a~~ls~~~~~~ 449 (507)
T PHA03392 380 AIDALVPMVGLPMMGDQFYNTNKYVEL-GIGRALDT---VTVSAAQLVLAIVDVIENP----KYRKNLKELRHLIRHQ 449 (507)
T ss_pred HHHcCCCEEECCCCccHHHHHHHHHHc-CcEEEecc---CCcCHHHHHHHHHHHhCCH----HHHHHHHHHHHHHHhC
Confidence 999999999999999999999999988 99999998 7899999999999999999 9999999999999843
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=3.2e-47 Score=391.77 Aligned_cols=383 Identities=24% Similarity=0.308 Sum_probs=227.9
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhhcCCCCCCceEEeccCCCCCCCCCCCCCCCCCCC--
Q 043168 7 NIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLP-- 84 (473)
Q Consensus 7 ~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~ip~~~~~~~l~~~~~~~~~~~-- 84 (473)
|||++|. ++||+.++..|+++|++ |||+||++++... ..+..... ..+++..++.+...+.............
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~-rGH~VTvl~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAE-RGHNVTVLTPSPS-SSLNPSKP--SNIRFETYPDPYPEEEFEEIFPEFISKFFS 76 (500)
T ss_dssp -----------SHHHHHHHHHHHHH-H-TTSEEEHHHHH-HT--------S-CCEEEE-----TT------TTHHHHHHH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHh-cCCceEEEEeecc-cccccccc--cceeeEEEcCCcchHHHhhhhHHHHHHHhh
Confidence 6888884 88999999999999999 9999999996432 22332222 4556666653311111111100000000
Q ss_pred -CCCchHHHHHHh-------h---hh------HHHHHHHhhhhhccCCCCCeEEEeCCCcchHHHHHHHhCCcEEEEccc
Q 043168 85 -FHLFPNFFESTL-------S---FK------PHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALFVGG 147 (473)
Q Consensus 85 -~~~~~~~~~~~~-------~---~~------~~l~~~l~~~~~~~~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~~~~ 147 (473)
......+..... . .+ +.+.+.+++. ++|++|+|.+..|+..+|+.+++|.+.+.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~~-------~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~ 149 (500)
T PF00201_consen 77 ESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKSE-------KFDLVISDAFDPCGLALAHYLGIPVIIISSS 149 (500)
T ss_dssp HHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHHH-------HHCT-EEEEEESSHHHHHHHHHHTHHHHHHC
T ss_pred hcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh-------ccccceEeeccchhHHHHHHhcCCeEEEecc
Confidence 000001111110 0 00 1122334444 7999999999889999999999999876443
Q ss_pred cHHHHH-----HHHhhhhcCCCCC---CCCcccCCCCCCcccch--hhhhhhhhccCCCChHHH---HHHHHhhhcccCc
Q 043168 148 GSFGFA-----CFYSLWLNLPHRD---SDEFLLPDFPEASRIHV--TQMTKFLRLADGSDSLSV---FFQKVLPQWMNAD 214 (473)
Q Consensus 148 ~~~~~~-----~~~~~~~~~p~~~---~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 214 (473)
...... ..+.+++|+|... ++.+.+..+..+..... ......+... ......+ .-....+...+..
T Consensus 150 ~~~~~~~~~~~g~p~~psyvP~~~s~~~~~msf~~Ri~N~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 228 (500)
T PF00201_consen 150 TPMYDLSSFSGGVPSPPSYVPSMFSDFSDRMSFWQRIKNFLFYLYFRFIFRYFFSP-QDKLYKKYFGFPFSFRELLSNAS 228 (500)
T ss_dssp CSCSCCTCCTSCCCTSTTSTTCBCCCSGTTSSSST--TTSHHHHHHHHHHHHGGGS--TTS-EEESS-GGGCHHHHHHHH
T ss_pred cccchhhhhccCCCCChHHhccccccCCCccchhhhhhhhhhhhhhccccccchhh-HHHHHhhhcccccccHHHHHHHH
Confidence 322111 1234556666543 44555555444322111 1111111111 0010000 0011223334556
Q ss_pred eEEecchhhhccc---------cCccccCCCCCCCCCCCCCCCchhhhhhhccCCCCceEEEEecCcccCCH-HHHHHHH
Q 043168 215 GILFNTVEELDKI---------VGPLLLSTGSRAGAGKEYGISTESCKNWLDTKPCNSVIYVSFGSQNTIAA-SQMMQLA 284 (473)
Q Consensus 215 ~~l~~~~~~l~~~---------vGp~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~-~~~~~~~ 284 (473)
.+++|+.+.++++ ||++...+ ..+++.++..|++...++++|||||||.....+ +.++.++
T Consensus 229 l~l~ns~~~ld~prp~~p~v~~vGgl~~~~---------~~~l~~~~~~~~~~~~~~~vv~vsfGs~~~~~~~~~~~~~~ 299 (500)
T PF00201_consen 229 LVLINSHPSLDFPRPLLPNVVEVGGLHIKP---------AKPLPEELWNFLDSSGKKGVVYVSFGSIVSSMPEEKLKEIA 299 (500)
T ss_dssp HCCSSTEEE----HHHHCTSTTGCGC-S-------------TCHHHHHHHTSTTTTTEEEEEE-TSSSTT-HHHHHHHHH
T ss_pred HHhhhccccCcCCcchhhcccccCcccccc---------ccccccccchhhhccCCCCEEEEecCcccchhHHHHHHHHH
Confidence 7788888888876 45543332 346788999999985568899999999976444 4578899
Q ss_pred HHHHhCCCcEEEEEcCCCCCCCccchhcccCCchhHHHhhccCCCCeEEecccChHHhhcccccceeeeccChhhHHHHH
Q 043168 285 MALEACGKNFIWVVKPPLGFDLNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVEILSHKSISAFLSHCGWNSVLEAL 364 (473)
Q Consensus 285 ~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~~~I~HgG~gs~~eal 364 (473)
+++++.+.+|||++... .+..+ +.|+.+.+|+||.+||.|+++++||||||+||++||+
T Consensus 300 ~~~~~~~~~~iW~~~~~--------------~~~~l-------~~n~~~~~W~PQ~~lL~hp~v~~fitHgG~~s~~Ea~ 358 (500)
T PF00201_consen 300 EAFENLPQRFIWKYEGE--------------PPENL-------PKNVLIVKWLPQNDLLAHPRVKLFITHGGLNSTQEAL 358 (500)
T ss_dssp HHHHCSTTEEEEEETCS--------------HGCHH-------HTTEEEESS--HHHHHTSTTEEEEEES--HHHHHHHH
T ss_pred HHHhhCCCccccccccc--------------ccccc-------cceEEEeccccchhhhhcccceeeeeccccchhhhhh
Confidence 99999999999999753 22233 6789999999999999999999999999999999999
Q ss_pred hcCCCEEecccccchhhhHHHHHHHHcceEEEecccCCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHh
Q 043168 365 SHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAKFELVMNETEKGMDLRKKASEVEMIIKNA 440 (473)
Q Consensus 365 ~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~~~~~~~~a 440 (473)
++|||+|++|+.+||+.||+++++. |+|+.++. ..+|.+++.++|+++|+|+ +|++||++++..++.-
T Consensus 359 ~~gvP~l~~P~~~DQ~~na~~~~~~-G~g~~l~~---~~~~~~~l~~ai~~vl~~~----~y~~~a~~ls~~~~~~ 426 (500)
T PF00201_consen 359 YHGVPMLGIPLFGDQPRNAARVEEK-GVGVVLDK---NDLTEEELRAAIREVLENP----SYKENAKRLSSLFRDR 426 (500)
T ss_dssp HCT--EEE-GCSTTHHHHHHHHHHT-TSEEEEGG---GC-SHHHHHHHHHHHHHSH----HHHHHHHHHHHTTT--
T ss_pred hccCCccCCCCcccCCccceEEEEE-eeEEEEEe---cCCcHHHHHHHHHHHHhhh----HHHHHHHHHHHHHhcC
Confidence 9999999999999999999999988 99999998 8999999999999999999 9999999999999843
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=2e-41 Score=338.00 Aligned_cols=379 Identities=19% Similarity=0.246 Sum_probs=247.3
Q ss_pred EcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhhcCCCCCCceEEeccCCCCCCCCCCCCCCCCCCCCCCchH
Q 043168 11 FPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLPFHLFPN 90 (473)
Q Consensus 11 ~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~ip~~~~~~~l~~~~~~~~~~~~~~~~~ 90 (473)
+.+|++||++|++.||++|++ +||+|+|++++.+.+.++. .|+.|..++........... ............
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~-~Gh~V~~~~~~~~~~~v~~-----~G~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 72 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVA-RGHRVTYATTEEFAERVEA-----AGAEFVLYGSALPPPDNPPE--NTEEEPIDIIEK 72 (392)
T ss_pred CCCCccccccccHHHHHHHHh-CCCeEEEEeCHHHHHHHHH-----cCCEEEecCCcCcccccccc--ccCcchHHHHHH
Confidence 367999999999999999999 9999999999999999999 55688877632110001110 000000001112
Q ss_pred HHHHHhhhhHHHHHHHhhhhhccCCCCCeEEEeCCCcchHHHHHHHhCCcEEEEccccHHHHHHHHhhhhcCCCCCCCCc
Q 043168 91 FFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALFVGGGSFGFACFYSLWLNLPHRDSDEF 170 (473)
Q Consensus 91 ~~~~~~~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 170 (473)
+......+.+.+.++++.+ +||+||+|.+++++..+|+.+|||+|.+++.+..... +.. + ..|.. ....
T Consensus 73 ~~~~~~~~~~~l~~~~~~~-------~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~-~~~-~-~~~~~-~~~~ 141 (392)
T TIGR01426 73 LLDEAEDVLPQLEEAYKGD-------RPDLIVYDIASWTGRLLARKWDVPVISSFPTFAANEE-FEE-M-VSPAG-EGSA 141 (392)
T ss_pred HHHHHHHHHHHHHHHhcCC-------CCCEEEECCccHHHHHHHHHhCCCEEEEehhhccccc-ccc-c-ccccc-hhhh
Confidence 2222223334455556666 8999999998889999999999999988544321100 000 0 00000 0000
Q ss_pred cc-CCCCCCcccchhhhhhhhhccCCCChHHHHHHHHhhhcccCceEEecchhhhccc----------cCccccCCCCCC
Q 043168 171 LL-PDFPEASRIHVTQMTKFLRLADGSDSLSVFFQKVLPQWMNADGILFNTVEELDKI----------VGPLLLSTGSRA 239 (473)
Q Consensus 171 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~----------vGp~~~~~~~~~ 239 (473)
.. +............+..+....+....-...+ .....+..+..+.+.|+++ +||+....
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~r~~~gl~~~~~~~~-----~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~Gp~~~~~---- 212 (392)
T TIGR01426 142 EEGAIAERGLAEYVARLSALLEEHGITTPPVEFL-----AAPRRDLNLVYTPKAFQPAGETFDDSFTFVGPCIGDR---- 212 (392)
T ss_pred hhhccccchhHHHHHHHHHHHHHhCCCCCCHHHH-----hcCCcCcEEEeCChHhCCCccccCCCeEEECCCCCCc----
Confidence 00 0000000000011111111111100000000 0112223455555555443 66655432
Q ss_pred CCCCCCCCCchhhhhhhccCCCCceEEEEecCcccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCccchhcccCCchh
Q 043168 240 GAGKEYGISTESCKNWLDTKPCNSVIYVSFGSQNTIAASQMMQLAMALEACGKNFIWVVKPPLGFDLNSEFRANEWLPEG 319 (473)
Q Consensus 240 ~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 319 (473)
.+...|+...+++++||||+||+......+++.+++++.+.+.+++|.++.+. ....
T Consensus 213 ----------~~~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~-------------~~~~ 269 (392)
T TIGR01426 213 ----------KEDGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGV-------------DPAD 269 (392)
T ss_pred ----------cccCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCC-------------ChhH
Confidence 12234776666788999999998766677889999999999999999887552 1111
Q ss_pred HHHhhccCCCCeEEecccChHHhhcccccceeeeccChhhHHHHHhcCCCEEecccccchhhhHHHHHHHHcceEEEecc
Q 043168 320 FEERIKDSGQGLVVQKWAPQVEILSHKSISAFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARG 399 (473)
Q Consensus 320 ~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~ 399 (473)
+. ..+.|+.+.+|+|+.++|++++ ++|||||+||++||+++|+|+|++|...||+.||+++++. |+|+.+..
T Consensus 270 ~~----~~~~~v~~~~~~p~~~ll~~~~--~~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~~-g~g~~l~~- 341 (392)
T TIGR01426 270 LG----ELPPNVEVRQWVPQLEILKKAD--AFITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAEL-GLGRHLPP- 341 (392)
T ss_pred hc----cCCCCeEEeCCCCHHHHHhhCC--EEEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHHHHC-CCEEEecc-
Confidence 11 1167899999999999999966 8999999999999999999999999999999999999987 99999987
Q ss_pred cCCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHH
Q 043168 400 MNCEVSKENLSAKFELVMNETEKGMDLRKKASEVEMIIKNAVRNEEKFKGSSVKAMEQFLDAA 462 (473)
Q Consensus 400 ~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~ 462 (473)
..+++++|.++|+++|+|+ +|+++++++++.++ ..+| ...+++.+.+.+
T Consensus 342 --~~~~~~~l~~ai~~~l~~~----~~~~~~~~l~~~~~-------~~~~-~~~aa~~i~~~~ 390 (392)
T TIGR01426 342 --EEVTAEKLREAVLAVLSDP----RYAERLRKMRAEIR-------EAGG-ARRAADEIEGFL 390 (392)
T ss_pred --ccCCHHHHHHHHHHHhcCH----HHHHHHHHHHHHHH-------HcCC-HHHHHHHHHHhh
Confidence 7889999999999999999 89999999999998 3355 455565555443
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=7.7e-42 Score=342.46 Aligned_cols=358 Identities=17% Similarity=0.174 Sum_probs=231.7
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhhcCCCCCCceEEeccCCCCCCCCCCCCCCCCC---
Q 043168 6 ENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDS--- 82 (473)
Q Consensus 6 ~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~ip~~~~~~~l~~~~~~~~~--- 82 (473)
+||+|+++|+.||++|+++||++|++ +||+|+|++++.+...++. .|++|.+++.. .............
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~-rGh~V~~~t~~~~~~~v~~-----~G~~~~~~~~~--~~~~~~~~~~~~~~~~ 72 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRA-AGHEVRVATPPEFADLVEA-----AGLEFVPVGGD--PDELLASPERNAGLLL 72 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHH-CCCeEEEeeCHhHHHHHHH-----cCCceeeCCCC--HHHHHhhhhhcccccc
Confidence 48999999999999999999999999 9999999999999999998 55588876621 0000000000000
Q ss_pred CCCCCc----hHHHHHHhhhhHHHHHHHhhhhhccCCCCCeEEEeCCCcchHHHHHHHhCCcEEEEccccHHHHHHHHhh
Q 043168 83 LPFHLF----PNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALFVGGGSFGFACFYSL 158 (473)
Q Consensus 83 ~~~~~~----~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~ 158 (473)
...... ..+......+.+.+.+.++.+ +||+||+|.+.+++..+|+++|||++.+.+++........+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~- 144 (401)
T cd03784 73 LGPGLLLGALRLLRREAEAMLDDLVAAARDW-------GPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSAFPP- 144 (401)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhccc-------CCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccccCCC-
Confidence 000001 111122233333444445556 99999999988889999999999999997765432111000
Q ss_pred hhcCCCCCCCCcccCCCCCCcccchhhhhhhhhccCCCChHHHHHHHHhhhc--c-------cCceEEecchhhhccc--
Q 043168 159 WLNLPHRDSDEFLLPDFPEASRIHVTQMTKFLRLADGSDSLSVFFQKVLPQW--M-------NADGILFNTVEELDKI-- 227 (473)
Q Consensus 159 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~~~~~l~~~~~~l~~~-- 227 (473)
+. . ......................+....... . ..+..+....+.+...
T Consensus 145 --------------~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (401)
T cd03784 145 --------------PL-G----RANLRLYALLEAELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFSPAVLPPPP 205 (401)
T ss_pred --------------cc-c----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEecCcccCCCCC
Confidence 00 0 000000000000000000001111110000 0 0111222211111111
Q ss_pred --------cC-ccccCCCCCCCCCCCCCCCchhhhhhhccCCCCceEEEEecCcccCC-HHHHHHHHHHHHhCCCcEEEE
Q 043168 228 --------VG-PLLLSTGSRAGAGKEYGISTESCKNWLDTKPCNSVIYVSFGSQNTIA-ASQMMQLAMALEACGKNFIWV 297 (473)
Q Consensus 228 --------vG-p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~-~~~~~~~~~al~~~~~~~i~~ 297 (473)
+| ++.... .....+.++..|++.. +++||||+||..... ..++..+++++...+.++||+
T Consensus 206 ~~~~~~~~~g~~~~~~~--------~~~~~~~~~~~~~~~~--~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~i~~ 275 (401)
T cd03784 206 DWPRFDLVTGYGFRDVP--------YNGPPPPELWLFLAAG--RPPVYVGFGSMVVRDPEALARLDVEAVATLGQRAILS 275 (401)
T ss_pred CccccCcEeCCCCCCCC--------CCCCCCHHHHHHHhCC--CCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeEEEE
Confidence 21 111111 1122356677787664 669999999998644 467788999999999999999
Q ss_pred EcCCCCCCCccchhcccCCchhHHHhhccCCCCeEEecccChHHhhcccccceeeeccChhhHHHHHhcCCCEEeccccc
Q 043168 298 VKPPLGFDLNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVEILSHKSISAFLSHCGWNSVLEALSHGVPIIGWPLAA 377 (473)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~i~~P~~~ 377 (473)
++... ... . ..++|+.+.+|+||.++|++++ +||||||+||++||+++|||+|++|+..
T Consensus 276 ~g~~~-------------~~~----~--~~~~~v~~~~~~p~~~ll~~~d--~~I~hgG~~t~~eal~~GvP~v~~P~~~ 334 (401)
T cd03784 276 LGWGG-------------LGA----E--DLPDNVRVVDFVPHDWLLPRCA--AVVHHGGAGTTAAALRAGVPQLVVPFFG 334 (401)
T ss_pred ccCcc-------------ccc----c--CCCCceEEeCCCCHHHHhhhhh--eeeecCCchhHHHHHHcCCCEEeeCCCC
Confidence 88652 111 0 1168999999999999999955 8999999999999999999999999999
Q ss_pred chhhhHHHHHHHHcceEEEecccCCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHH
Q 043168 378 EQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAKFELVMNETEKGMDLRKKASEVEMIIK 438 (473)
Q Consensus 378 DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~~~~~~~ 438 (473)
||+.||+++++. |+|+.+.. ..++.++|.++++++|+++ +++++++.++.++
T Consensus 335 dQ~~~a~~~~~~-G~g~~l~~---~~~~~~~l~~al~~~l~~~-----~~~~~~~~~~~~~ 386 (401)
T cd03784 335 DQPFWAARVAEL-GAGPALDP---RELTAERLAAALRRLLDPP-----SRRRAAALLRRIR 386 (401)
T ss_pred CcHHHHHHHHHC-CCCCCCCc---ccCCHHHHHHHHHHHhCHH-----HHHHHHHHHHHHH
Confidence 999999999977 99999987 6689999999999999866 6667777777775
No 26
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=3.5e-41 Score=332.52 Aligned_cols=382 Identities=18% Similarity=0.222 Sum_probs=243.9
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhhcCCCCCCceEEeccCCCCCCCCCCCCCCCCCCC
Q 043168 5 KENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLP 84 (473)
Q Consensus 5 ~~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~ip~~~~~~~l~~~~~~~~~~~ 84 (473)
++||+|++.|++||++|+++||++|.+ +||+|+|+|++.+.+.+++.| +.|..++.. +...... ...
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~-~gheV~~~~~~~~~~~ve~ag-----~~f~~~~~~---~~~~~~~----~~~ 67 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRR-RGHEVVFASTGKFKEFVEAAG-----LAFVAYPIR---DSELATE----DGK 67 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHh-cCCeEEEEeCHHHHHHHHHhC-----cceeecccc---CChhhhh----hhh
Confidence 359999999999999999999999999 999999999999999999955 367766621 1111110 011
Q ss_pred CCCchH---HHHHHhhhhHHHHHHHhhhhhccCCCCCeEEEeCCCcchHHHHHHHhCCcEEEEccccHHHHHHHHhhhhc
Q 043168 85 FHLFPN---FFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALFVGGGSFGFACFYSLWLN 161 (473)
Q Consensus 85 ~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~ 161 (473)
...... ....+......+.+++.+. .||+|+.|...+.+ .+++..++|++.......+.......+...
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~-------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (406)
T COG1819 68 FAGVKSFRRLLQQFKKLIRELLELLREL-------EPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAAGLPLPP 139 (406)
T ss_pred hhccchhHHHhhhhhhhhHHHHHHHHhc-------chhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCcccccCccc
Confidence 111122 2223334444555667777 89999999866655 889999999987654433322221111110
Q ss_pred CCCCCCCCcccCCC--CCC-cccchhhhhhhhhccC-CCChHHHHHHHHhhhcccCc-eEEecchhhh----ccc-----
Q 043168 162 LPHRDSDEFLLPDF--PEA-SRIHVTQMTKFLRLAD-GSDSLSVFFQKVLPQWMNAD-GILFNTVEEL----DKI----- 227 (473)
Q Consensus 162 ~p~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~l----~~~----- 227 (473)
+.. .+.+..+.. +.. .........+...... ....+.....+....+.... ..+.-....+ ..+
T Consensus 140 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 217 (406)
T COG1819 140 VGI--AGKLPIPLYPLPPRLVRPLIFARSWLPKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVLFPPGDRLPFIGPY 217 (406)
T ss_pred ccc--cccccccccccChhhccccccchhhhhhhhhhhhccccccccchHHHhcCCCCccccccccccCCCCCCCCCcCc
Confidence 000 111111111 000 0000000000000000 00000000000111111111 1111111111 011
Q ss_pred cCccccCCCCCCCCCCCCCCCchhhhhhhccCCCCceEEEEecCcccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCc
Q 043168 228 VGPLLLSTGSRAGAGKEYGISTESCKNWLDTKPCNSVIYVSFGSQNTIAASQMMQLAMALEACGKNFIWVVKPPLGFDLN 307 (473)
Q Consensus 228 vGp~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~ 307 (473)
+||+.... ..++..|.. .++++||||+||.... .++++.++++++..++++|+.++...
T Consensus 218 ~~~~~~~~-------------~~~~~~~~~--~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~~~----- 276 (406)
T COG1819 218 IGPLLGEA-------------ANELPYWIP--ADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGGAR----- 276 (406)
T ss_pred cccccccc-------------cccCcchhc--CCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEeccccc-----
Confidence 23332222 233444432 3477999999999876 88999999999999999999987621
Q ss_pred cchhcccCCchhHHHhhccCCCCeEEecccChHHhhcccccceeeeccChhhHHHHHhcCCCEEecccccchhhhHHHHH
Q 043168 308 SEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVEILSHKSISAFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLE 387 (473)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~ 387 (473)
. .-.++ +.|+.+.+|+||.++|++++ +||||||+||++|||++|||+|++|...||+.||.|++
T Consensus 277 ------~-~~~~~-------p~n~~v~~~~p~~~~l~~ad--~vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve 340 (406)
T COG1819 277 ------D-TLVNV-------PDNVIVADYVPQLELLPRAD--AVIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERVE 340 (406)
T ss_pred ------c-ccccC-------CCceEEecCCCHHHHhhhcC--EEEecCCcchHHHHHHcCCCEEEecCCcchhHHHHHHH
Confidence 0 00111 78999999999999999977 89999999999999999999999999999999999999
Q ss_pred HHHcceEEEecccCCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHH
Q 043168 388 EVIGVCVEVARGMNCEVSKENLSAKFELVMNETEKGMDLRKKASEVEMIIKNAVRNEEKFKGSSVKAMEQFLDAAL 463 (473)
Q Consensus 388 ~~lG~G~~l~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~ 463 (473)
+. |+|+.+.. ..++++.++++|+++|+|+ +|+++++++++.+++. +| .+.+.+.+++..
T Consensus 341 ~~-G~G~~l~~---~~l~~~~l~~av~~vL~~~----~~~~~~~~~~~~~~~~-------~g--~~~~a~~le~~~ 399 (406)
T COG1819 341 EL-GAGIALPF---EELTEERLRAAVNEVLADD----SYRRAAERLAEEFKEE-------DG--PAKAADLLEEFA 399 (406)
T ss_pred Hc-CCceecCc---ccCCHHHHHHHHHHHhcCH----HHHHHHHHHHHHhhhc-------cc--HHHHHHHHHHHH
Confidence 77 99999998 8999999999999999999 9999999999999844 55 444555555533
No 27
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=3.7e-36 Score=309.70 Aligned_cols=396 Identities=26% Similarity=0.379 Sum_probs=240.6
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhhcCCCCCCceE---EeccCCCCCCCCCCCCCCCC
Q 043168 5 KENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHL---REIPFDGIAHDLPPCTENSD 81 (473)
Q Consensus 5 ~~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~---~~ip~~~~~~~l~~~~~~~~ 81 (473)
+.+++++++|++||++|++.||+.|+. +||+||++++.......... .....+.. ...++....++++.......
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~-~gh~vt~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAE-RGHNVTVVTPSFNALKLSKS-SKSKSIKKINPPPFEFLTIPDGLPEGWEDDD 82 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHH-cCCceEEEEeechhcccCCc-ccceeeeeeecChHHhhhhhhhhccchHHHH
Confidence 458889999999999999999999999 99999999987765554431 10011111 11111100011222111100
Q ss_pred CCCCCCchHHHHHHhhhhHHHHHHHhhhhhccCCCCCeEEEeCCCcchHHHHHHHhC-CcEEEEccccHHHHHHHH-hhh
Q 043168 82 SLPFHLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYG-IFNALFVGGGSFGFACFY-SLW 159 (473)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~~~~~~~A~~~g-iP~v~~~~~~~~~~~~~~-~~~ 159 (473)
.................+.+.+...... ...++|++|+|.+..+...++.... ++...+.+.......... .+.
T Consensus 83 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~ 158 (496)
T KOG1192|consen 83 ---LDISESLLELNKTCEDLLRDPLEKLLLL-KSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSPL 158 (496)
T ss_pred ---HHHHHHHHHHHHHHHHHHhchHHHHHHh-hcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCcc
Confidence 0000001111111112222211111000 0104999999997666666676664 888777666655444332 233
Q ss_pred hcCCCCC----CCCcccCCCCCCcccchhhhhhhhhccCCCChHHHHH-----------HHHhhhcccCceEEecchhhh
Q 043168 160 LNLPHRD----SDEFLLPDFPEASRIHVTQMTKFLRLADGSDSLSVFF-----------QKVLPQWMNADGILFNTVEEL 224 (473)
Q Consensus 160 ~~~p~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~l~~~~~~l 224 (473)
.++|... ++.+.++++..++ ....+................. ........+.+..++++...+
T Consensus 159 ~~~p~~~~~~~~~~~~~~~~~~n~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ln~~~~~ 236 (496)
T KOG1192|consen 159 SYVPSPFSLSSGDDMSFPERVPNL--IKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNASFIFLNSNPLL 236 (496)
T ss_pred cccCcccCccccccCcHHHHHHHH--HHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeEEEEccCccc
Confidence 3444322 1223333222211 0111111111100000000000 011123344556666665555
Q ss_pred ccc----------cCccccCCCCCCCCCCCCCCCchhhhhhhccCCCC--ceEEEEecCcc---cCCHHHHHHHHHHHHh
Q 043168 225 DKI----------VGPLLLSTGSRAGAGKEYGISTESCKNWLDTKPCN--SVIYVSFGSQN---TIAASQMMQLAMALEA 289 (473)
Q Consensus 225 ~~~----------vGp~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~V~vs~GS~~---~~~~~~~~~~~~al~~ 289 (473)
+.. |||+...... .......+|++..+.. ++|||||||.. .+..+++..++.+++.
T Consensus 237 ~~~~~~~~~~v~~IG~l~~~~~~---------~~~~~~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp~~~~~~l~~~l~~ 307 (496)
T KOG1192|consen 237 DFEPRPLLPKVIPIGPLHVKDSK---------QKSPLPLEWLDILDESRHSVVYISFGSMVNSADLPEEQKKELAKALES 307 (496)
T ss_pred CCCCCCCCCCceEECcEEecCcc---------ccccccHHHHHHHhhccCCeEEEECCcccccccCCHHHHHHHHHHHHh
Confidence 552 7887776311 0011355666655443 79999999998 6889999999999999
Q ss_pred C-CCcEEEEEcCCCCCCCccchhcccCCchhHHHhhccCCCCeEEecccChHHh-hcccccceeeeccChhhHHHHHhcC
Q 043168 290 C-GKNFIWVVKPPLGFDLNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVEI-LSHKSISAFLSHCGWNSVLEALSHG 367 (473)
Q Consensus 290 ~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~l-L~~~~~~~~I~HgG~gs~~eal~~G 367 (473)
. ++.|+|+...+. . ..+++++.++ . ..|+...+|+||.++ |+|+++++|||||||||++|++++|
T Consensus 308 ~~~~~FiW~~~~~~------~----~~~~~~~~~~-~--~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~~~~G 374 (496)
T KOG1192|consen 308 LQGVTFLWKYRPDD------S----IYFPEGLPNR-G--RGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLESIYSG 374 (496)
T ss_pred CCCceEEEEecCCc------c----hhhhhcCCCC-C--cCceEEecCCCcHHHhcCCCcCcEEEECCcccHHHHHHhcC
Confidence 8 899999998652 0 0022333221 1 568888899999998 5999999999999999999999999
Q ss_pred CCEEecccccchhhhHHHHHHHHcceEEEecccCCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHH
Q 043168 368 VPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAKFELVMNETEKGMDLRKKASEVEMIIK 438 (473)
Q Consensus 368 vP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~~~~~~~ 438 (473)
||+|++|+++||+.||+++++. |.|..+.+ ..++.+.+.+++.++++++ +|+++++++++.++
T Consensus 375 vP~v~~Plf~DQ~~Na~~i~~~-g~~~v~~~---~~~~~~~~~~~~~~il~~~----~y~~~~~~l~~~~~ 437 (496)
T KOG1192|consen 375 VPMVCVPLFGDQPLNARLLVRH-GGGGVLDK---RDLVSEELLEAIKEILENE----EYKEAAKRLSEILR 437 (496)
T ss_pred CceecCCccccchhHHHHHHhC-CCEEEEeh---hhcCcHHHHHHHHHHHcCh----HHHHHHHHHHHHHH
Confidence 9999999999999999999999 65555555 5666666999999999999 99999999999987
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.95 E-value=9.3e-26 Score=220.05 Aligned_cols=311 Identities=17% Similarity=0.175 Sum_probs=192.5
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhhcCCCCCCceEEeccCCCCCCCCCCCCCCCCCCCC
Q 043168 6 ENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLPF 85 (473)
Q Consensus 6 ~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~ip~~~~~~~l~~~~~~~~~~~~ 85 (473)
+||+|.+.++.||++|.++||++|.+ +||+|+|+++....+ ....++.++.+..++.. ++... ...
T Consensus 2 ~~i~~~~GGTGGHi~Pala~a~~l~~-~g~~v~~vg~~~~~e---~~l~~~~g~~~~~~~~~----~l~~~------~~~ 67 (352)
T PRK12446 2 KKIVFTGGGSAGHVTPNLAIIPYLKE-DNWDISYIGSHQGIE---KTIIEKENIPYYSISSG----KLRRY------FDL 67 (352)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHHHh-CCCEEEEEECCCccc---cccCcccCCcEEEEecc----CcCCC------chH
Confidence 48999999999999999999999999 999999999765332 22221145677666521 22110 000
Q ss_pred CCchHHHHHHhhhhHHHHHHHhhhhhccCCCCCeEEEeCCCcch--HHHHHHHhCCcEEEEccccHHHHHHHHhhhhcCC
Q 043168 86 HLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAW--SAEIAQEYGIFNALFVGGGSFGFACFYSLWLNLP 163 (473)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~~~--~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p 163 (473)
..+...+... ...-....++++. +||+||+.....+ +..+|+.+++|++.+....
T Consensus 68 ~~~~~~~~~~-~~~~~~~~i~~~~-------kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~--------------- 124 (352)
T PRK12446 68 KNIKDPFLVM-KGVMDAYVRIRKL-------KPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDM--------------- 124 (352)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHhc-------CCCEEEecCchhhHHHHHHHHHcCCCEEEECCCC---------------
Confidence 0011111111 2222334678888 9999998775543 5789999999998873321
Q ss_pred CCCCCCcccCCCCCCcccchhhhhhhhhccCCCChHHHHHHHHhhhcccCceEEecchhhhccc----cCccccCCCCCC
Q 043168 164 HRDSDEFLLPDFPEASRIHVTQMTKFLRLADGSDSLSVFFQKVLPQWMNADGILFNTVEELDKI----VGPLLLSTGSRA 239 (473)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~----vGp~~~~~~~~~ 239 (473)
.+++.. +.+.++.......++. +...+... +|+-+......
T Consensus 125 --------~~g~~n-------------------r~~~~~a~~v~~~f~~-------~~~~~~~~k~~~tG~Pvr~~~~~- 169 (352)
T PRK12446 125 --------TPGLAN-------------------KIALRFASKIFVTFEE-------AAKHLPKEKVIYTGSPVREEVLK- 169 (352)
T ss_pred --------CccHHH-------------------HHHHHhhCEEEEEccc-------hhhhCCCCCeEEECCcCCccccc-
Confidence 122111 0000000000000000 00001100 35433332100
Q ss_pred CCCCCCCCCchhhhhhhccCCCCceEEEEecCcccCCH-HHHHHHHHHHHhCCCcEEEEEcCCCCCCCccchhcccCCch
Q 043168 240 GAGKEYGISTESCKNWLDTKPCNSVIYVSFGSQNTIAA-SQMMQLAMALEACGKNFIWVVKPPLGFDLNSEFRANEWLPE 318 (473)
Q Consensus 240 ~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~-~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 318 (473)
...+...+.+.-.+++++|+|+.||.+.... +.+..++..+.. +.+++|.+|.+. +..
T Consensus 170 -------~~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~~-~~~vv~~~G~~~-------------~~~ 228 (352)
T PRK12446 170 -------GNREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELLL-KYQIVHLCGKGN-------------LDD 228 (352)
T ss_pred -------ccchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhcc-CcEEEEEeCCch-------------HHH
Confidence 0111222222223356799999999986543 445555555533 488899888641 111
Q ss_pred hHHHhhccCCCCeEEeccc-C-hHHhhcccccceeeeccChhhHHHHHhcCCCEEecccc-----cchhhhHHHHHHHHc
Q 043168 319 GFEERIKDSGQGLVVQKWA-P-QVEILSHKSISAFLSHCGWNSVLEALSHGVPIIGWPLA-----AEQFYNSKLLEEVIG 391 (473)
Q Consensus 319 ~~~~~~~~~~~~v~~~~~~-p-~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~i~~P~~-----~DQ~~~a~~v~~~lG 391 (473)
.. .. ..++.+..|+ + -.+++..++ ++|||||.+|++|++++|+|+|++|+. .||..||+++++. |
T Consensus 229 ~~-~~----~~~~~~~~f~~~~m~~~~~~ad--lvIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~~-g 300 (352)
T PRK12446 229 SL-QN----KEGYRQFEYVHGELPDILAITD--FVISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFERQ-G 300 (352)
T ss_pred HH-hh----cCCcEEecchhhhHHHHHHhCC--EEEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHHC-C
Confidence 11 11 1244556787 4 367898877 899999999999999999999999984 4899999999988 9
Q ss_pred ceEEEecccCCccCHHHHHHHHHHHHcCC
Q 043168 392 VCVEVARGMNCEVSKENLSAKFELVMNET 420 (473)
Q Consensus 392 ~G~~l~~~~~~~~~~~~l~~ai~~~l~~~ 420 (473)
+|..+.. .+++++.+.+++.++++|+
T Consensus 301 ~~~~l~~---~~~~~~~l~~~l~~ll~~~ 326 (352)
T PRK12446 301 YASVLYE---EDVTVNSLIKHVEELSHNN 326 (352)
T ss_pred CEEEcch---hcCCHHHHHHHHHHHHcCH
Confidence 9999987 7899999999999999886
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.93 E-value=7.7e-24 Score=205.50 Aligned_cols=297 Identities=23% Similarity=0.306 Sum_probs=187.7
Q ss_pred ceEEEEcCC-CccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhhcCCCCCCceEEeccCCCCCCCCCCCCCCCCCCC
Q 043168 6 ENIVMFPLM-AQGHIIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLP 84 (473)
Q Consensus 6 ~~Il~~~~~-~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~ip~~~~~~~l~~~~~~~~~~~ 84 (473)
+||+|...+ +.||+.++++||++| + ||+|+|++.....+.+.. .+....++ ++....... .
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L-r--g~~v~~~~~~~~~~~~~~------~~~~~~~~------~~~~~~~~~---~ 62 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL-R--GHEVTFITSGPAPEFLKP------RFPVREIP------GLGPIQENG---R 62 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH-c--cCceEEEEcCCcHHHhcc------ccCEEEcc------CceEeccCC---c
Confidence 489888877 999999999999999 4 899999998876666644 23455554 222111110 1
Q ss_pred CCCchHHHH------HHhhhhHHHHHHHhhhhhccCCCCCeEEEeCCCcchHHHHHHHhCCcEEEEccccHHHHHHHHhh
Q 043168 85 FHLFPNFFE------STLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALFVGGGSFGFACFYSL 158 (473)
Q Consensus 85 ~~~~~~~~~------~~~~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~ 158 (473)
.+....... ......+.+.++++.. +||+||+|. .+.+..+|+..|||++.+........
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~pDlVIsD~-~~~~~~aa~~~giP~i~i~~~~~~~~------ 128 (318)
T PF13528_consen 63 LDRWKTVRNNIRWLARLARRIRREIRWLREF-------RPDLVISDF-YPLAALAARRAGIPVIVISNQYWFLH------ 128 (318)
T ss_pred cchHHHHHHHHHhhHHHHHHHHHHHHHHHhc-------CCCEEEEcC-hHHHHHHHHhcCCCEEEEEehHHccc------
Confidence 111111111 2233444556677777 999999996 55577889999999998854432210
Q ss_pred hhcCCCCCCCCcccCCCCCCcccchhhhhhhhhccCCCChHHHHHHHHhh--hcccCceEEecchhhhc-----cc-cCc
Q 043168 159 WLNLPHRDSDEFLLPDFPEASRIHVTQMTKFLRLADGSDSLSVFFQKVLP--QWMNADGILFNTVEELD-----KI-VGP 230 (473)
Q Consensus 159 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~l~-----~~-vGp 230 (473)
+... .... ......+.+... ....+...+.-++.... .. +||
T Consensus 129 --------------~~~~----~~~~------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p 178 (318)
T PF13528_consen 129 --------------PNFW----LPWD------------QDFGRLIERYIDRYHFPPADRRLALSFYPPLPPFFRVPFVGP 178 (318)
T ss_pred --------------ccCC----cchh------------hhHHHHHHHhhhhccCCcccceecCCccccccccccccccCc
Confidence 0000 0000 001111111111 12233333333332000 00 455
Q ss_pred cccCCCCCCCCCCCCCCCchhhhhhhccCCCCceEEEEecCcccCCHHHHHHHHHHHHhCC-CcEEEEEcCCCCCCCccc
Q 043168 231 LLLSTGSRAGAGKEYGISTESCKNWLDTKPCNSVIYVSFGSQNTIAASQMMQLAMALEACG-KNFIWVVKPPLGFDLNSE 309 (473)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~~~~~ 309 (473)
+.... ..... ..+++.|+|++|..... .++++++..+ +.+++. +...
T Consensus 179 ~~~~~----------------~~~~~--~~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g~~~------- 226 (318)
T PF13528_consen 179 IIRPE----------------IRELP--PEDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF-GPNA------- 226 (318)
T ss_pred hhccc----------------ccccC--CCCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-cCCc-------
Confidence 55433 11111 11345799999988643 5566676755 666655 5431
Q ss_pred hhcccCCchhHHHhhccCCCCeEEeccc--ChHHhhcccccceeeeccChhhHHHHHhcCCCEEeccc--ccchhhhHHH
Q 043168 310 FRANEWLPEGFEERIKDSGQGLVVQKWA--PQVEILSHKSISAFLSHCGWNSVLEALSHGVPIIGWPL--AAEQFYNSKL 385 (473)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~--p~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~i~~P~--~~DQ~~~a~~ 385 (473)
..+. ..|+.+..|. ...++|..++ ++|+|||.||++|++++|+|+|++|. ..||..||++
T Consensus 227 -----~~~~---------~~ni~~~~~~~~~~~~~m~~ad--~vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~ 290 (318)
T PF13528_consen 227 -----ADPR---------PGNIHVRPFSTPDFAELMAAAD--LVISKGGYTTISEALALGKPALVIPRPGQDEQEYNARK 290 (318)
T ss_pred -----cccc---------CCCEEEeecChHHHHHHHHhCC--EEEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHH
Confidence 0111 6789988876 3477888866 89999999999999999999999999 6899999999
Q ss_pred HHHHHcceEEEecccCCccCHHHHHHHHHHH
Q 043168 386 LEEVIGVCVEVARGMNCEVSKENLSAKFELV 416 (473)
Q Consensus 386 v~~~lG~G~~l~~~~~~~~~~~~l~~ai~~~ 416 (473)
+++. |+|+.+.. .+++++.|+++|+++
T Consensus 291 l~~~-G~~~~~~~---~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 291 LEEL-GLGIVLSQ---EDLTPERLAEFLERL 317 (318)
T ss_pred HHHC-CCeEEccc---ccCCHHHHHHHHhcC
Confidence 9977 99999987 889999999999764
No 30
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.92 E-value=1.1e-22 Score=196.19 Aligned_cols=325 Identities=22% Similarity=0.235 Sum_probs=201.5
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCc-EEEEEcCCcchhhhhhcCCCCCCceEEeccCCCCCCCCCCCCCCCCCCC
Q 043168 6 ENIVMFPLMAQGHIIPFLALALHLENTNRY-TITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLP 84 (473)
Q Consensus 6 ~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh-~Vt~~~~~~~~~~v~~~~~~~~~~~~~~ip~~~~~~~l~~~~~~~~~~~ 84 (473)
++|++...++.||+.|.++|+++|.+ +|+ +|.+..+....+...... .++.+..|+.. ++......
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~-~g~~~v~~~~~~~~~e~~l~~~---~~~~~~~I~~~----~~~~~~~~----- 67 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAK-RGWEQVIVLGTGDGLEAFLVKQ---YGIEFELIPSG----GLRRKGSL----- 67 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHh-hCccEEEEecccccceeeeccc---cCceEEEEecc----cccccCcH-----
Confidence 37899999999999999999999999 999 688886654333322211 45677777643 33221110
Q ss_pred CCCchHHHHHHhhhhHHHHHHHhhhhhccCCCCCeEEEeCCCcc--hHHHHHHHhCCcEEEEccccHHHHHHHHhhhhcC
Q 043168 85 FHLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFA--WSAEIAQEYGIFNALFVGGGSFGFACFYSLWLNL 162 (473)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~~--~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~ 162 (473)
..+...+.. .......++++++. +||+||+-..++ .+..+|..+|||.+.+-.
T Consensus 68 -~~~~~~~~~-~~~~~~a~~il~~~-------kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEq---------------- 122 (357)
T COG0707 68 -KLLKAPFKL-LKGVLQARKILKKL-------KPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQ---------------- 122 (357)
T ss_pred -HHHHHHHHH-HHHHHHHHHHHHHc-------CCCEEEecCCccccHHHHHHHhCCCCEEEEec----------------
Confidence 001111111 22234557889999 999999966555 456789999999998822
Q ss_pred CCCCCCCcccCCCCCCcccchhhhhhhhhccCCCChHHHHHHHHhhhcccCceEEecchhh--hccccC-ccccCCCCCC
Q 043168 163 PHRDSDEFLLPDFPEASRIHVTQMTKFLRLADGSDSLSVFFQKVLPQWMNADGILFNTVEE--LDKIVG-PLLLSTGSRA 239 (473)
Q Consensus 163 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--l~~~vG-p~~~~~~~~~ 239 (473)
+..++... +...++...+...+.. ....... ... +| |+.....
T Consensus 123 -------n~~~G~an-------------------k~~~~~a~~V~~~f~~----~~~~~~~~~~~~-tG~Pvr~~~~--- 168 (357)
T COG0707 123 -------NAVPGLAN-------------------KILSKFAKKVASAFPK----LEAGVKPENVVV-TGIPVRPEFE--- 168 (357)
T ss_pred -------CCCcchhH-------------------HHhHHhhceeeecccc----ccccCCCCceEE-ecCcccHHhh---
Confidence 22223221 0011111111110100 0000000 000 12 2221110
Q ss_pred CCCCCCCCCchhhhhhhccCCCCceEEEEecCcccCC-HHHHHHHHHHHHhCCCcEEEEEcCCCCCCCccchhcccCCch
Q 043168 240 GAGKEYGISTESCKNWLDTKPCNSVIYVSFGSQNTIA-ASQMMQLAMALEACGKNFIWVVKPPLGFDLNSEFRANEWLPE 318 (473)
Q Consensus 240 ~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~-~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 318 (473)
..+.....+.... ++++|+|+.||.+... .+.+..+...+.+ +..+++.+|.+. .+
T Consensus 169 -------~~~~~~~~~~~~~-~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~~~--------------~~ 225 (357)
T COG0707 169 -------ELPAAEVRKDGRL-DKKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIHQTGKND--------------LE 225 (357)
T ss_pred -------ccchhhhhhhccC-CCcEEEEECCcchhHHHHHHHHHHHHHhhh-CeEEEEEcCcch--------------HH
Confidence 0011111111111 4679999999998643 3455556655655 578888887651 22
Q ss_pred hHHHhhccCCCC-eEEecccCh-HHhhcccccceeeeccChhhHHHHHhcCCCEEecccc----cchhhhHHHHHHHHcc
Q 043168 319 GFEERIKDSGQG-LVVQKWAPQ-VEILSHKSISAFLSHCGWNSVLEALSHGVPIIGWPLA----AEQFYNSKLLEEVIGV 392 (473)
Q Consensus 319 ~~~~~~~~~~~~-v~~~~~~p~-~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~i~~P~~----~DQ~~~a~~v~~~lG~ 392 (473)
.....+. ..+ +.+.+|+++ ..+++.++ ++||++|.+|+.|++++|+|+|.+|+- .||..||+.++++ |.
T Consensus 226 ~~~~~~~--~~~~~~v~~f~~dm~~~~~~AD--LvIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~-ga 300 (357)
T COG0707 226 ELKSAYN--ELGVVRVLPFIDDMAALLAAAD--LVISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKA-GA 300 (357)
T ss_pred HHHHHHh--hcCcEEEeeHHhhHHHHHHhcc--EEEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHhC-CC
Confidence 3333333 223 788889887 55787766 899999999999999999999999974 4899999999999 99
Q ss_pred eEEEecccCCccCHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 043168 393 CVEVARGMNCEVSKENLSAKFELVMNETEKGMDLRKKASEV 433 (473)
Q Consensus 393 G~~l~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~~ 433 (473)
|..+.. .++|.+++.+.|.+++.++++.+.|+++++++
T Consensus 301 a~~i~~---~~lt~~~l~~~i~~l~~~~~~l~~m~~~a~~~ 338 (357)
T COG0707 301 ALVIRQ---SELTPEKLAELILRLLSNPEKLKAMAENAKKL 338 (357)
T ss_pred EEEecc---ccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 999998 88999999999999999874544455444443
No 31
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.90 E-value=3.1e-22 Score=193.91 Aligned_cols=306 Identities=14% Similarity=0.108 Sum_probs=173.5
Q ss_pred eEEEEcCC-CccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhhcCCCCCCce-EEeccCCCCCCCCCCCCCCCCCCC
Q 043168 7 NIVMFPLM-AQGHIIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIH-LREIPFDGIAHDLPPCTENSDSLP 84 (473)
Q Consensus 7 ~Il~~~~~-~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~-~~~ip~~~~~~~l~~~~~~~~~~~ 84 (473)
||+|...+ +.||+.|.++||++|++ ||+|+|+++......+...+ +. +..+| ++..... .. .
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~--g~ev~~~~~~~~~~~~~~~~-----~~~~~~~p------~~~~~~~--~~-~ 64 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN--DYEVSYIASGRSKNYISKYG-----FKVFETFP------GIKLKGE--DG-K 64 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC--CCeEEEEEcCCHHHhhhhhc-----CcceeccC------CceEeec--CC-c
Confidence 57787766 55999999999999986 99999999887666666533 23 33333 1111000 00 0
Q ss_pred CCCchHHHH--HH-hhhhHHHHHHHhhhhhccCCCCCeEEEeCCCcchHHHHHHHhCCcEEEEccccHHHHHHHHhhhhc
Q 043168 85 FHLFPNFFE--ST-LSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALFVGGGSFGFACFYSLWLN 161 (473)
Q Consensus 85 ~~~~~~~~~--~~-~~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~ 161 (473)
.+....+.. .+ ........++++.+ +||+||+|. .+.+..+|+.+|||++.+..+....
T Consensus 65 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~-------~pDlVi~d~-~~~~~~aA~~~~iP~i~i~~q~~~~---------- 126 (321)
T TIGR00661 65 VNIVKTLRNKEYSPKKAIRREINIIREY-------NPDLIISDF-EYSTVVAAKLLKIPVICISNQNYTR---------- 126 (321)
T ss_pred CcHHHHHHhhccccHHHHHHHHHHHHhc-------CCCEEEECC-chHHHHHHHhcCCCEEEEecchhhc----------
Confidence 111122211 11 12233456788888 999999994 6667889999999999875421110
Q ss_pred CCCCCCCCcccCCCCCCcccchhhhhhhhhccCCCChHHHHHHHHhhhcccCceEEecchhhhccccCccccCCCCCCCC
Q 043168 162 LPHRDSDEFLLPDFPEASRIHVTQMTKFLRLADGSDSLSVFFQKVLPQWMNADGILFNTVEELDKIVGPLLLSTGSRAGA 241 (473)
Q Consensus 162 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~vGp~~~~~~~~~~~ 241 (473)
++.. . +...+. ....+. .....++......++... . | .+.. . ...
T Consensus 127 ----------~~~~-----~--~~~~~~---------~~~~~~---~~~~~~~~~~~~~~~~~~-~-~--~p~~-~-~~~ 171 (321)
T TIGR00661 127 ----------YPLK-----T--DLIVYP---------TMAALR---IFNERCERFIVPDYPFPY-T-I--CPKI-I-KNM 171 (321)
T ss_pred ----------CCcc-----c--chhHHH---------HHHHHH---HhccccceEeeecCCCCC-C-C--Cccc-c-ccC
Confidence 0110 0 000000 000010 111112222222211110 0 1 0000 0 000
Q ss_pred CCCCCCCchhhhhhhccCCCCceEEEEecCcccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCccchhcccCCchhHH
Q 043168 242 GKEYGISTESCKNWLDTKPCNSVIYVSFGSQNTIAASQMMQLAMALEACGKNFIWVVKPPLGFDLNSEFRANEWLPEGFE 321 (473)
Q Consensus 242 ~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (473)
.. .........|... .++.|+|.+|+.. .+.+++++.+.+. +.++++.. +.....+
T Consensus 172 ~~--~~~~~~~~~~~~~--~~~~iLv~~g~~~------~~~l~~~l~~~~~-~~~i~~~~------------~~~~~~~- 227 (321)
T TIGR00661 172 EG--PLIRYDVDDVDNY--GEDYILVYIGFEY------RYKILELLGKIAN-VKFVCYSY------------EVAKNSY- 227 (321)
T ss_pred CC--cccchhhhccccC--CCCcEEEECCcCC------HHHHHHHHHhCCC-eEEEEeCC------------CCCcccc-
Confidence 00 0011122223222 2346778788754 2455667766542 22333322 1011111
Q ss_pred HhhccCCCCeEEecccC--hHHhhcccccceeeeccChhhHHHHHhcCCCEEeccccc--chhhhHHHHHHHHcceEEEe
Q 043168 322 ERIKDSGQGLVVQKWAP--QVEILSHKSISAFLSHCGWNSVLEALSHGVPIIGWPLAA--EQFYNSKLLEEVIGVCVEVA 397 (473)
Q Consensus 322 ~~~~~~~~~v~~~~~~p--~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~i~~P~~~--DQ~~~a~~v~~~lG~G~~l~ 397 (473)
+.|+.+..|.| ..++|+.++ ++|||||++|++||+++|+|+|++|... ||..||+.+++. |+|+.+.
T Consensus 228 ------~~~v~~~~~~~~~~~~~l~~ad--~vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~-g~~~~l~ 298 (321)
T TIGR00661 228 ------NENVEIRRITTDNFKELIKNAE--LVITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDL-GCGIALE 298 (321)
T ss_pred ------CCCEEEEECChHHHHHHHHhCC--EEEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHC-CCEEEcC
Confidence 56888889997 356677755 8999999999999999999999999854 899999999988 9999998
Q ss_pred cccCCccCHHHHHHHHHHHHcCC
Q 043168 398 RGMNCEVSKENLSAKFELVMNET 420 (473)
Q Consensus 398 ~~~~~~~~~~~l~~ai~~~l~~~ 420 (473)
. .++ ++.+++.++++|+
T Consensus 299 ~---~~~---~~~~~~~~~~~~~ 315 (321)
T TIGR00661 299 Y---KEL---RLLEAILDIRNMK 315 (321)
T ss_pred h---hhH---HHHHHHHhccccc
Confidence 7 444 6666777788777
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.83 E-value=5e-18 Score=167.46 Aligned_cols=341 Identities=16% Similarity=0.184 Sum_probs=189.9
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcc--hhhhhhcCCCCCCceEEeccCCCCCCCCCCCCCCCCCC
Q 043168 6 ENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSN--LKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSL 83 (473)
Q Consensus 6 ~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~--~~~v~~~~~~~~~~~~~~ip~~~~~~~l~~~~~~~~~~ 83 (473)
+||+|++.+..||+...+.||+.|.+ +||+|++++.+.. ....+. .++++..++.+ ++...
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~-~g~ev~vv~~~~~~~~~~~~~-----~g~~~~~~~~~----~~~~~------- 64 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKK-RGWEVLYLGTARGMEARLVPK-----AGIEFHFIPSG----GLRRK------- 64 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHh-CCCEEEEEECCCchhhhcccc-----CCCcEEEEecc----CcCCC-------
Confidence 48999999999999999999999999 9999999997552 111122 35566665532 11110
Q ss_pred CCCCchHHHH--HHhhhhHHHHHHHhhhhhccCCCCCeEEEeCCCc--chHHHHHHHhCCcEEEEccccHHHHHHHHhhh
Q 043168 84 PFHLFPNFFE--STLSFKPHFRKLINGLIDEQNGHKPVCIIADMFF--AWSAEIAQEYGIFNALFVGGGSFGFACFYSLW 159 (473)
Q Consensus 84 ~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~--~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~ 159 (473)
. ....+.. ........+.+++++. +||+|++.... +.+..+++..++|+|.+.....
T Consensus 65 ~--~~~~l~~~~~~~~~~~~~~~~ik~~-------~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~---------- 125 (357)
T PRK00726 65 G--SLANLKAPFKLLKGVLQARKILKRF-------KPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQNAV---------- 125 (357)
T ss_pred C--hHHHHHHHHHHHHHHHHHHHHHHhc-------CCCEEEECCCcchhHHHHHHHHcCCCEEEEcCCCC----------
Confidence 0 0111111 1123334556778888 99999998632 3455678889999986521100
Q ss_pred hcCCCCCCCCcccCCCCCCcccchhhhhhhhhccCCCChHHHHHHHHhhhcccCceEEecchhhhccccCccccCCCCCC
Q 043168 160 LNLPHRDSDEFLLPDFPEASRIHVTQMTKFLRLADGSDSLSVFFQKVLPQWMNADGILFNTVEELDKIVGPLLLSTGSRA 239 (473)
Q Consensus 160 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~vGp~~~~~~~~~ 239 (473)
+++..+ +.. .....+-... ...+ .. .......+ +|.......
T Consensus 126 -------------~~~~~r--~~~-~~~d~ii~~~-----~~~~---~~-~~~~~i~v----------i~n~v~~~~--- 167 (357)
T PRK00726 126 -------------PGLANK--LLA-RFAKKVATAF-----PGAF---PE-FFKPKAVV----------TGNPVREEI--- 167 (357)
T ss_pred -------------ccHHHH--HHH-HHhchheECc-----hhhh---hc-cCCCCEEE----------ECCCCChHh---
Confidence 000000 000 0000000000 0000 00 00111111 121111110
Q ss_pred CCCCCCCCCchhhhhhhccCCCCceEEEEecCcccCCHHHHHHHHHHHHhCCC--cEEEEEcCCCCCCCccchhcccCCc
Q 043168 240 GAGKEYGISTESCKNWLDTKPCNSVIYVSFGSQNTIAASQMMQLAMALEACGK--NFIWVVKPPLGFDLNSEFRANEWLP 317 (473)
Q Consensus 240 ~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~ 317 (473)
......-.. +...++.++|++..|+... ......+.+++.+... .+++.+|.+. .
T Consensus 168 ------~~~~~~~~~-~~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~~~~~~~~~~~~~~G~g~--------------~ 224 (357)
T PRK00726 168 ------LALAAPPAR-LAGREGKPTLLVVGGSQGA--RVLNEAVPEALALLPEALQVIHQTGKGD--------------L 224 (357)
T ss_pred ------hcccchhhh-ccCCCCCeEEEEECCcHhH--HHHHHHHHHHHHHhhhCcEEEEEcCCCc--------------H
Confidence 000000011 1112234466666665432 2222223344444322 4456666542 1
Q ss_pred hhHHHhhccCCCCeEEecccC-hHHhhcccccceeeeccChhhHHHHHhcCCCEEeccc----ccchhhhHHHHHHHHcc
Q 043168 318 EGFEERIKDSGQGLVVQKWAP-QVEILSHKSISAFLSHCGWNSVLEALSHGVPIIGWPL----AAEQFYNSKLLEEVIGV 392 (473)
Q Consensus 318 ~~~~~~~~~~~~~v~~~~~~p-~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~i~~P~----~~DQ~~~a~~v~~~lG~ 392 (473)
+.+.+... ..-++.+.+|+. ..++++.++ ++|+|+|.++++||+++|+|+|++|. ..||..++..+++. |+
T Consensus 225 ~~~~~~~~-~~~~v~~~g~~~~~~~~~~~~d--~~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~-~~ 300 (357)
T PRK00726 225 EEVRAAYA-AGINAEVVPFIDDMAAAYAAAD--LVICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARALVDA-GA 300 (357)
T ss_pred HHHHHHhh-cCCcEEEeehHhhHHHHHHhCC--EEEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHHC-CC
Confidence 22222221 133478889984 478998866 79999999999999999999999997 36899999999988 99
Q ss_pred eEEEecccCCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHH
Q 043168 393 CVEVARGMNCEVSKENLSAKFELVMNETEKGMDLRKKASEVEMIIKNAVRNEEKFKGSSVKAMEQFLDAA 462 (473)
Q Consensus 393 G~~l~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~ 462 (473)
|+.+.. +.++++.+++++.++++|+ +++++..+-+..+ ....+..+.++.+++.+
T Consensus 301 g~~~~~---~~~~~~~l~~~i~~ll~~~----~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~ 355 (357)
T PRK00726 301 ALLIPQ---SDLTPEKLAEKLLELLSDP----ERLEAMAEAARAL--------GKPDAAERLADLIEELA 355 (357)
T ss_pred EEEEEc---ccCCHHHHHHHHHHHHcCH----HHHHHHHHHHHhc--------CCcCHHHHHHHHHHHHh
Confidence 999987 6678999999999999998 5554443333332 22333555555555543
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.79 E-value=1.2e-16 Score=157.33 Aligned_cols=320 Identities=20% Similarity=0.194 Sum_probs=184.8
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhhcCCCCCCceEEeccCCCCCCCCCCCCCCCCCCCCC
Q 043168 7 NIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLPFH 86 (473)
Q Consensus 7 ~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~ip~~~~~~~l~~~~~~~~~~~~~ 86 (473)
||++.+.++.||+...+.||+.|.+ .||+|++++....... ..... .++++..++.. ++... ....
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~-~G~ev~v~~~~~~~~~-~~~~~--~~~~~~~~~~~----~~~~~------~~~~ 66 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRE-RGAEVLFLGTKRGLEA-RLVPK--AGIPLHTIPVG----GLRRK------GSLK 66 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHh-CCCEEEEEECCCcchh-hcccc--cCCceEEEEec----CcCCC------ChHH
Confidence 6899999999999999999999999 9999999986532111 10000 34566665532 11110 0000
Q ss_pred CchHHHHHHhhhhHHHHHHHhhhhhccCCCCCeEEEeCCCc--chHHHHHHHhCCcEEEEccccHHHHHHHHhhhhcCCC
Q 043168 87 LFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFF--AWSAEIAQEYGIFNALFVGGGSFGFACFYSLWLNLPH 164 (473)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~--~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p~ 164 (473)
.+..++. .......+.+++++. +||+|++.... ..+..+|...++|++......
T Consensus 67 ~~~~~~~-~~~~~~~~~~~i~~~-------~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~~---------------- 122 (350)
T cd03785 67 KLKAPFK-LLKGVLQARKILKKF-------KPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQNA---------------- 122 (350)
T ss_pred HHHHHHH-HHHHHHHHHHHHHhc-------CCCEEEECCCCcchHHHHHHHHhCCCEEEEcCCC----------------
Confidence 0111111 122334567788888 99999987533 245678889999998642110
Q ss_pred CCCCCcccCCCCCCcccchhhhhhhhhccCCCChHHHHHHHHhhhcccCceEEecchhhhcc--c-----cCccccCCCC
Q 043168 165 RDSDEFLLPDFPEASRIHVTQMTKFLRLADGSDSLSVFFQKVLPQWMNADGILFNTVEELDK--I-----VGPLLLSTGS 237 (473)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~--~-----vGp~~~~~~~ 237 (473)
.+++ ..+++ ...++.++..+....+. . +|.......
T Consensus 123 -------~~~~-----------------------~~~~~------~~~~~~vi~~s~~~~~~~~~~~~~~i~n~v~~~~- 165 (350)
T cd03785 123 -------VPGL-----------------------ANRLL------ARFADRVALSFPETAKYFPKDKAVVTGNPVREEI- 165 (350)
T ss_pred -------CccH-----------------------HHHHH------HHhhCEEEEcchhhhhcCCCCcEEEECCCCchHH-
Confidence 0000 00000 01123333333222111 0 222111100
Q ss_pred CCCCCCCCCCCchhhhhhhccCCCCceEEEEecCcccCC-HHHHHHHHHHHHhCCCcEEEEEcCCCCCCCccchhcccCC
Q 043168 238 RAGAGKEYGISTESCKNWLDTKPCNSVIYVSFGSQNTIA-ASQMMQLAMALEACGKNFIWVVKPPLGFDLNSEFRANEWL 316 (473)
Q Consensus 238 ~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~-~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 316 (473)
...... ...+...+++++|++..|+..... .+.+..++..+...+..+++.+|.+.
T Consensus 166 --------~~~~~~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g~-------------- 222 (350)
T cd03785 166 --------LALDRE-RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKGD-------------- 222 (350)
T ss_pred --------hhhhhh-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCcc--------------
Confidence 000001 112222223446666666664322 12333444555444455666666431
Q ss_pred chhHHHhhccCCCCeEEeccc-ChHHhhcccccceeeeccChhhHHHHHhcCCCEEeccc----ccchhhhHHHHHHHHc
Q 043168 317 PEGFEERIKDSGQGLVVQKWA-PQVEILSHKSISAFLSHCGWNSVLEALSHGVPIIGWPL----AAEQFYNSKLLEEVIG 391 (473)
Q Consensus 317 ~~~~~~~~~~~~~~v~~~~~~-p~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~i~~P~----~~DQ~~~a~~v~~~lG 391 (473)
.+.+.+.+.+...|+.+.+|+ +..++|+.++ ++|+++|.+|+.||+++|+|+|++|. ..+|..++..+.+. |
T Consensus 223 ~~~l~~~~~~~~~~v~~~g~~~~~~~~l~~ad--~~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~-g 299 (350)
T cd03785 223 LEEVKKAYEELGVNYEVFPFIDDMAAAYAAAD--LVISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALVKA-G 299 (350)
T ss_pred HHHHHHHHhccCCCeEEeehhhhHHHHHHhcC--EEEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHhC-C
Confidence 123333332113688888998 4477888866 79999999999999999999999986 35789999999988 9
Q ss_pred ceEEEecccCCccCHHHHHHHHHHHHcCChhhHHHHHHH
Q 043168 392 VCVEVARGMNCEVSKENLSAKFELVMNETEKGMDLRKKA 430 (473)
Q Consensus 392 ~G~~l~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a 430 (473)
+|..+.. ...+.+.+.+++.++++|++..+.+++++
T Consensus 300 ~g~~v~~---~~~~~~~l~~~i~~ll~~~~~~~~~~~~~ 335 (350)
T cd03785 300 AAVLIPQ---EELTPERLAAALLELLSDPERLKAMAEAA 335 (350)
T ss_pred CEEEEec---CCCCHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999886 45689999999999998883333333333
No 34
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.74 E-value=1.7e-15 Score=148.82 Aligned_cols=306 Identities=20% Similarity=0.227 Sum_probs=168.0
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchh--hhhhcCCCCCCceEEeccCCCCCCCCCCCCCCCCCCC
Q 043168 7 NIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLK--KLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLP 84 (473)
Q Consensus 7 ~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~--~v~~~~~~~~~~~~~~ip~~~~~~~l~~~~~~~~~~~ 84 (473)
||+|++.+..||+.....||+.|.. +||+|++++.+.... .... .++++..++.. ..... . .
T Consensus 2 ~i~~~~g~~~g~~~~~~~La~~L~~-~g~eV~vv~~~~~~~~~~~~~-----~g~~~~~i~~~----~~~~~-----~-~ 65 (348)
T TIGR01133 2 KVVLAAGGTGGHIFPALAVAEELIK-RGVEVLWLGTKRGLEKRLVPK-----AGIEFYFIPVG----GLRRK-----G-S 65 (348)
T ss_pred eEEEEeCccHHHHhHHHHHHHHHHh-CCCEEEEEeCCCcchhccccc-----CCCceEEEecc----CcCCC-----C-h
Confidence 8999999999999988899999999 999999998643211 1111 34566655522 11000 0 0
Q ss_pred CCCchHHHHHHhhhhHHHHHHHhhhhhccCCCCCeEEEeCCCcc--hHHHHHHHhCCcEEEEccccHHHHHHHHhhhhcC
Q 043168 85 FHLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFA--WSAEIAQEYGIFNALFVGGGSFGFACFYSLWLNL 162 (473)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~~--~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~ 162 (473)
...+...+.. ......+.+++++. +||+|++..... .+..+++..++|.+.+.....
T Consensus 66 ~~~l~~~~~~-~~~~~~l~~~i~~~-------~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~~~~~~------------- 124 (348)
T TIGR01133 66 FRLIKTPLKL-LKAVFQARRILKKF-------KPDAVIGFGGYVSGPAGLAAKLLGIPLFHHEQNAV------------- 124 (348)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHhc-------CCCEEEEcCCcccHHHHHHHHHcCCCEEEECCCCC-------------
Confidence 0001111111 22334567788888 999999875432 345578889999875411000
Q ss_pred CCCCCCCcccCCCCCCcccchhhhhhhhhccCCCChHHHHHHHHhhhcccCceEEecchhhhccc----cCccccCCCCC
Q 043168 163 PHRDSDEFLLPDFPEASRIHVTQMTKFLRLADGSDSLSVFFQKVLPQWMNADGILFNTVEELDKI----VGPLLLSTGSR 238 (473)
Q Consensus 163 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~----vGp~~~~~~~~ 238 (473)
++ . ..+++ .+.++.++..+...-+.. +|.-+.....
T Consensus 125 ----------~~----------~-------------~~~~~------~~~~d~ii~~~~~~~~~~~~~~i~n~v~~~~~- 164 (348)
T TIGR01133 125 ----------PG----------L-------------TNKLL------SRFAKKVLISFPGAKDHFEAVLVGNPVRQEIR- 164 (348)
T ss_pred ----------cc----------H-------------HHHHH------HHHhCeeEECchhHhhcCCceEEcCCcCHHHh-
Confidence 00 0 00000 011222222222111110 1211110000
Q ss_pred CCCCCCCCCCchhhhhhhccCCCCceEEEEecCcccCC-HHHHHHHHHHHHhCCCcEEEEEcCCCCCCCccchhcccCCc
Q 043168 239 AGAGKEYGISTESCKNWLDTKPCNSVIYVSFGSQNTIA-ASQMMQLAMALEACGKNFIWVVKPPLGFDLNSEFRANEWLP 317 (473)
Q Consensus 239 ~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~-~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 317 (473)
..+.. ..++.-.+++++|.+..|+..... ...+..++..+...+..+++..+... .
T Consensus 165 --------~~~~~-~~~~~~~~~~~~i~~~gg~~~~~~~~~~l~~a~~~l~~~~~~~~~~~g~~~-------------~- 221 (348)
T TIGR01133 165 --------SLPVP-RERFGLREGKPTILVLGGSQGAKILNELVPKALAKLAEKGIQIVHQTGKND-------------L- 221 (348)
T ss_pred --------cccch-hhhcCCCCCCeEEEEECCchhHHHHHHHHHHHHHHHhhcCcEEEEECCcch-------------H-
Confidence 00000 112211223345544445554211 11122233334334556665444331 1
Q ss_pred hhHHHhhccCC-CCeEEeccc--ChHHhhcccccceeeeccChhhHHHHHhcCCCEEecccc---cchhhhHHHHHHHHc
Q 043168 318 EGFEERIKDSG-QGLVVQKWA--PQVEILSHKSISAFLSHCGWNSVLEALSHGVPIIGWPLA---AEQFYNSKLLEEVIG 391 (473)
Q Consensus 318 ~~~~~~~~~~~-~~v~~~~~~--p~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~i~~P~~---~DQ~~~a~~v~~~lG 391 (473)
+.+...+.+.. .++ ..|. +...+|+.++ ++|+++|.+++.||+++|+|+|++|.. .+|..|+..+.+. |
T Consensus 222 ~~l~~~~~~~~l~~~--v~~~~~~~~~~l~~ad--~~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~-~ 296 (348)
T TIGR01133 222 EKVKNVYQELGIEAI--VTFIDENMAAAYAAAD--LVISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDL-G 296 (348)
T ss_pred HHHHHHHhhCCceEE--ecCcccCHHHHHHhCC--EEEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHC-C
Confidence 23333222111 122 2233 4577888866 799999988999999999999999863 4688899999877 9
Q ss_pred ceEEEecccCCccCHHHHHHHHHHHHcCC
Q 043168 392 VCVEVARGMNCEVSKENLSAKFELVMNET 420 (473)
Q Consensus 392 ~G~~l~~~~~~~~~~~~l~~ai~~~l~~~ 420 (473)
.|..+.. ...+++.+.+++.++++|+
T Consensus 297 ~G~~~~~---~~~~~~~l~~~i~~ll~~~ 322 (348)
T TIGR01133 297 AGLVIRQ---KELLPEKLLEALLKLLLDP 322 (348)
T ss_pred CEEEEec---ccCCHHHHHHHHHHHHcCH
Confidence 9998876 5668999999999999988
No 35
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.72 E-value=5.4e-16 Score=153.60 Aligned_cols=352 Identities=14% Similarity=0.085 Sum_probs=195.5
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhhcCCCCCCceEEeccCCCCCCCCCCCCCCCCCCCC
Q 043168 6 ENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLPF 85 (473)
Q Consensus 6 ~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~ip~~~~~~~l~~~~~~~~~~~~ 85 (473)
.||+|.+.++.||+.|. +||++|++ +|++|.|++.... .++..|.. ..+.+..++.. ++..
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~-~~~~~~~~g~gg~--~m~~~g~~-~~~~~~~l~v~----G~~~---------- 66 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKE-HYPNARFIGVAGP--RMAAEGCE-VLYSMEELSVM----GLRE---------- 66 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHh-cCCCcEEEEEccH--HHHhCcCc-cccChHHhhhc----cHHH----------
Confidence 58999999999999999 99999999 9999999985422 34443321 12333333321 2110
Q ss_pred CCchHHHHHHhhhhHHHHHHHhhhhhccCCCCCeEEEeCCCcc-h--HHHHHHHhCCcEEEEccccHHHHHHHHhhhhcC
Q 043168 86 HLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFA-W--SAEIAQEYGIFNALFVGGGSFGFACFYSLWLNL 162 (473)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~~-~--~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~ 162 (473)
.+. ....+........+++++. +||+||.-.... . ...+|+.+|||++.+.+ |-.|
T Consensus 67 -~l~-~~~~~~~~~~~~~~~l~~~-------kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~-P~~w----------- 125 (385)
T TIGR00215 67 -VLG-RLGRLLKIRKEVVQLAKQA-------KPDLLVGIDAPDFNLTKELKKKDPGIKIIYYIS-PQVW----------- 125 (385)
T ss_pred -HHH-HHHHHHHHHHHHHHHHHhc-------CCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeC-CcHh-----------
Confidence 111 1222233445677888888 999999644322 2 22378899999997631 1101
Q ss_pred CCCCCCCcccCCCCCCcccchhhhhhhhhccCCCChHHHHHHHHhhhcccCceEEecchhhhccccCccccCCCCCCCCC
Q 043168 163 PHRDSDEFLLPDFPEASRIHVTQMTKFLRLADGSDSLSVFFQKVLPQWMNADGILFNTVEELDKIVGPLLLSTGSRAGAG 242 (473)
Q Consensus 163 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~vGp~~~~~~~~~~~~ 242 (473)
.++. .. ++.+.++...+...++.....+......... ||.-..+...
T Consensus 126 -----------aw~~---~~-------------~r~l~~~~d~v~~~~~~e~~~~~~~g~~~~~-vGnPv~~~~~----- 172 (385)
T TIGR00215 126 -----------AWRK---WR-------------AKKIEKATDFLLAILPFEKAFYQKKNVPCRF-VGHPLLDAIP----- 172 (385)
T ss_pred -----------hcCc---ch-------------HHHHHHHHhHhhccCCCcHHHHHhcCCCEEE-ECCchhhhcc-----
Confidence 0110 00 1111111111111110000000000000000 2311111100
Q ss_pred CCCCCCchhhhhhhccCCCCceEEEEecCcccCCHHHHHHHHHHHHh-----CCCcEEEEEcCCCCCCCccchhcccCCc
Q 043168 243 KEYGISTESCKNWLDTKPCNSVIYVSFGSQNTIAASQMMQLAMALEA-----CGKNFIWVVKPPLGFDLNSEFRANEWLP 317 (473)
Q Consensus 243 ~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~-----~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 317 (473)
..........+-+.-.+++++|.+..||....-...+..+++++.. .+.++++..+.+. ..
T Consensus 173 -~~~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~-------------~~ 238 (385)
T TIGR00215 173 -LYKPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNFK-------------RR 238 (385)
T ss_pred -ccCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCch-------------hH
Confidence 0000111222222222345688888888865323334445444333 2345555444331 11
Q ss_pred hhHHHhhccC--CCCeEEecccChHHhhcccccceeeeccChhhHHHHHhcCCCEEec----cccc---------chhhh
Q 043168 318 EGFEERIKDS--GQGLVVQKWAPQVEILSHKSISAFLSHCGWNSVLEALSHGVPIIGW----PLAA---------EQFYN 382 (473)
Q Consensus 318 ~~~~~~~~~~--~~~v~~~~~~p~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~i~~----P~~~---------DQ~~~ 382 (473)
..+.+..... ...+....+ +...+++.++ ++|+-+|..|+ |++++|+|+|++ |+.. .|..|
T Consensus 239 ~~~~~~~~~~~~~~~v~~~~~-~~~~~l~aAD--l~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~ 314 (385)
T TIGR00215 239 LQFEQIKAEYGPDLQLHLIDG-DARKAMFAAD--AALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKTDYISL 314 (385)
T ss_pred HHHHHHHHHhCCCCcEEEECc-hHHHHHHhCC--EEeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeec
Confidence 1121111100 122322222 3355787766 89999999988 999999999999 8742 38889
Q ss_pred HHHHHHHHcceEEEecccCCccCHHHHHHHHHHHHcCC----hhhHHHHHHHHHHHHHHHHhhhhhhccCCChHHHHHHH
Q 043168 383 SKLLEEVIGVCVEVARGMNCEVSKENLSAKFELVMNET----EKGMDLRKKASEVEMIIKNAVRNEEKFKGSSVKAMEQF 458 (473)
Q Consensus 383 a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ai~~~l~~~----~~~~~~~~~a~~~~~~~~~a~~~~~~~~g~~~~~~~~~ 458 (473)
+..++.. ++...+.. .+.|++.|.+.+.++|.|+ +..+.+++..+++.+.+ +++|.+.++++.+
T Consensus 315 ~nil~~~-~~~pel~q---~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l--------~~~~~~~~~a~~i 382 (385)
T TIGR00215 315 PNILANR-LLVPELLQ---EECTPHPLAIALLLLLENGLKAYKEMHRERQFFEELRQRI--------YCNADSERAAQAV 382 (385)
T ss_pred cHHhcCC-ccchhhcC---CCCCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHh--------cCCCHHHHHHHHH
Confidence 9999988 88888876 7899999999999999998 77778888888888877 5556667777666
Q ss_pred HH
Q 043168 459 LD 460 (473)
Q Consensus 459 ~~ 460 (473)
++
T Consensus 383 ~~ 384 (385)
T TIGR00215 383 LE 384 (385)
T ss_pred hh
Confidence 54
No 36
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.71 E-value=1.5e-15 Score=143.52 Aligned_cols=105 Identities=18% Similarity=0.191 Sum_probs=78.7
Q ss_pred ceEEEEecCcccCCHHHHHHHHHHHHh--CCCcEEEEEcCCCCCCCccchhcccCCchhHHHhhccCCCCeEEecccCh-
Q 043168 263 SVIYVSFGSQNTIAASQMMQLAMALEA--CGKNFIWVVKPPLGFDLNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQ- 339 (473)
Q Consensus 263 ~~V~vs~GS~~~~~~~~~~~~~~al~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~- 339 (473)
+.|+|++|.....+ ....+++++.. .+.++.+++|.+. ...+.+...... ..|+.+..|+++
T Consensus 171 ~~iLi~~GG~d~~~--~~~~~l~~l~~~~~~~~i~vv~G~~~------------~~~~~l~~~~~~-~~~i~~~~~~~~m 235 (279)
T TIGR03590 171 RRVLVSFGGADPDN--LTLKLLSALAESQINISITLVTGSSN------------PNLDELKKFAKE-YPNIILFIDVENM 235 (279)
T ss_pred CeEEEEeCCcCCcC--HHHHHHHHHhccccCceEEEEECCCC------------cCHHHHHHHHHh-CCCEEEEeCHHHH
Confidence 47999999665322 44556666665 3567788888652 123344443322 458889999998
Q ss_pred HHhhcccccceeeeccChhhHHHHHhcCCCEEecccccchhhhHHH
Q 043168 340 VEILSHKSISAFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKL 385 (473)
Q Consensus 340 ~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~i~~P~~~DQ~~~a~~ 385 (473)
.++|..++ ++||+|| +|+.|++++|+|+|++|+..+|..||+.
T Consensus 236 ~~lm~~aD--l~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 236 AELMNEAD--LAIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred HHHHHHCC--EEEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 47998877 8999999 9999999999999999999999999974
No 37
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.69 E-value=2.5e-14 Score=131.80 Aligned_cols=321 Identities=18% Similarity=0.183 Sum_probs=191.0
Q ss_pred CceEEEEcC--CCccCHHHHHHHHHHHHhC-CCcEEEEEcCCcchhhhhhcCCCCCCceEEeccCCCCCCCCCCCCCCCC
Q 043168 5 KENIVMFPL--MAQGHIIPFLALALHLENT-NRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSD 81 (473)
Q Consensus 5 ~~~Il~~~~--~~~GHv~P~l~LA~~L~~~-rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~ip~~~~~~~l~~~~~~~~ 81 (473)
.+||+|++. .+.||+.++..||++|+++ +|.+|+++++.....-+.. . .++.|+.+| .+........
T Consensus 9 ~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~--~--~gVd~V~LP------sl~k~~~G~~ 78 (400)
T COG4671 9 RPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPG--P--AGVDFVKLP------SLIKGDNGEY 78 (400)
T ss_pred cceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCC--c--ccCceEecC------ceEecCCCce
Confidence 459999996 4899999999999999995 5999999998754433322 1 678999888 2222211111
Q ss_pred CCCCCCchHHHHHHhhhhHHHHHHHhhhhhccCCCCCeEEEeCCCcchHHH------HHHH--hCCcEEEEccccHHHHH
Q 043168 82 SLPFHLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSAE------IAQE--YGIFNALFVGGGSFGFA 153 (473)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~~~~~~------~A~~--~giP~v~~~~~~~~~~~ 153 (473)
........ .-+..+.-...+...++.. +||++|+|.+-. |.. +++. .+-+++...
T Consensus 79 ~~~d~~~~-l~e~~~~Rs~lil~t~~~f-------kPDi~IVd~~P~-Glr~EL~ptL~yl~~~~t~~vL~l-------- 141 (400)
T COG4671 79 GLVDLDGD-LEETKKLRSQLILSTAETF-------KPDIFIVDKFPF-GLRFELLPTLEYLKTTGTRLVLGL-------- 141 (400)
T ss_pred eeeecCCC-HHHHHHHHHHHHHHHHHhc-------CCCEEEEecccc-chhhhhhHHHHHHhhcCCcceeeh--------
Confidence 11111111 1122222233456667777 999999998544 311 1111 011111110
Q ss_pred HHHhhhhcCCCCCCCCcccCCCCCCcccchhhhhhhhhccCCCChHHHHHHHHhhhcccCceEEecchhhhccc------
Q 043168 154 CFYSLWLNLPHRDSDEFLLPDFPEASRIHVTQMTKFLRLADGSDSLSVFFQKVLPQWMNADGILFNTVEELDKI------ 227 (473)
Q Consensus 154 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~------ 227 (473)
-..++.+........++.......+ ..|.+++-..+.|-.+
T Consensus 142 ---------------------------r~i~D~p~~~~~~w~~~~~~~~I~r------~yD~V~v~GdP~f~d~~~~~~~ 188 (400)
T COG4671 142 ---------------------------RSIRDIPQELEADWRRAETVRLINR------FYDLVLVYGDPDFYDPLTEFPF 188 (400)
T ss_pred ---------------------------HhhhhchhhhccchhhhHHHHHHHH------hheEEEEecCccccChhhcCCc
Confidence 0011111111111111111111111 2234444444433222
Q ss_pred ----------cCccccCCCCCCCCCCCCCCCchhhhhhhccCCCCceEEEEecCcccCCHHHHHHHHHHHHh-CCCc--E
Q 043168 228 ----------VGPLLLSTGSRAGAGKEYGISTESCKNWLDTKPCNSVIYVSFGSQNTIAASQMMQLAMALEA-CGKN--F 294 (473)
Q Consensus 228 ----------vGp~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~-~~~~--~ 294 (473)
+|.+..+ .+. .-..|... +++--|+||-|-.. ...+++...++|-.. .+.+ .
T Consensus 189 ~~~i~~k~~ytG~vq~~--~~~-----------~~~p~~~~-pE~~~Ilvs~GGG~-dG~eLi~~~l~A~~~l~~l~~~~ 253 (400)
T COG4671 189 APAIRAKMRYTGFVQRS--LPH-----------LPLPPHEA-PEGFDILVSVGGGA-DGAELIETALAAAQLLAGLNHKW 253 (400)
T ss_pred cHhhhhheeEeEEeecc--CcC-----------CCCCCcCC-CccceEEEecCCCh-hhHHHHHHHHHHhhhCCCCCcce
Confidence 4555111 000 00011111 22336888777654 245666666666544 4444 5
Q ss_pred EEEEcCCCCCCCccchhcccCCchhHHHhhccC-C--CCeEEecccCh-HHhhcccccceeeeccChhhHHHHHhcCCCE
Q 043168 295 IWVVKPPLGFDLNSEFRANEWLPEGFEERIKDS-G--QGLVVQKWAPQ-VEILSHKSISAFLSHCGWNSVLEALSHGVPI 370 (473)
Q Consensus 295 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~v~~~~~~p~-~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~ 370 (473)
++++|+. .|....+++... + +++.+.+|-.+ ..++..++ .+|+-||+||++|-|.+|+|.
T Consensus 254 ~ivtGP~--------------MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~--~vVSm~GYNTvCeILs~~k~a 317 (400)
T COG4671 254 LIVTGPF--------------MPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGAR--LVVSMGGYNTVCEILSFGKPA 317 (400)
T ss_pred EEEeCCC--------------CCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhh--eeeecccchhhhHHHhCCCce
Confidence 5666644 676666655422 3 78999999766 67888866 899999999999999999999
Q ss_pred Eecccc---cchhhhHHHHHHHHcceEEEecccCCccCHHHHHHHHHHHHcCC
Q 043168 371 IGWPLA---AEQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAKFELVMNET 420 (473)
Q Consensus 371 i~~P~~---~DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ai~~~l~~~ 420 (473)
+++|.. .||..-|+|+++. |+.-.+.+ ..+++..+++++...++-+
T Consensus 318 LivPr~~p~eEQliRA~Rl~~L-GL~dvL~p---e~lt~~~La~al~~~l~~P 366 (400)
T COG4671 318 LIVPRAAPREEQLIRAQRLEEL-GLVDVLLP---ENLTPQNLADALKAALARP 366 (400)
T ss_pred EEeccCCCcHHHHHHHHHHHhc-CcceeeCc---ccCChHHHHHHHHhcccCC
Confidence 999986 4999999999955 99988888 8999999999999999844
No 38
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.67 E-value=1e-14 Score=145.12 Aligned_cols=136 Identities=19% Similarity=0.295 Sum_probs=97.2
Q ss_pred CCceEEEEecCcccCCHHHHHHHHHHHHh-CCCcEEEEEcCCCCCCCccchhcccCCchhHHHhhccCCCCeEEecccCh
Q 043168 261 CNSVIYVSFGSQNTIAASQMMQLAMALEA-CGKNFIWVVKPPLGFDLNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQ 339 (473)
Q Consensus 261 ~~~~V~vs~GS~~~~~~~~~~~~~~al~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 339 (473)
++++|++..|+.... ..+..+++++.+ .+.+++++.|.+. .+-+.+.+...+.+.++.+.+|+++
T Consensus 201 ~~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~~------------~~~~~l~~~~~~~~~~v~~~g~~~~ 266 (380)
T PRK13609 201 NKKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGKNE------------ALKQSLEDLQETNPDALKVFGYVEN 266 (380)
T ss_pred CCcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCCH------------HHHHHHHHHHhcCCCcEEEEechhh
Confidence 355777777887532 234556666655 3567776666431 1122333322222458999999987
Q ss_pred -HHhhcccccceeeeccChhhHHHHHhcCCCEEec-ccccchhhhHHHHHHHHcceEEEecccCCccCHHHHHHHHHHHH
Q 043168 340 -VEILSHKSISAFLSHCGWNSVLEALSHGVPIIGW-PLAAEQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAKFELVM 417 (473)
Q Consensus 340 -~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~i~~-P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ai~~~l 417 (473)
.++++.++ ++|+.+|..|+.||+++|+|+|+. |..+.+..|+..+.+. |+|+... +.+.+.++|.+++
T Consensus 267 ~~~l~~~aD--~~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~-G~~~~~~-------~~~~l~~~i~~ll 336 (380)
T PRK13609 267 IDELFRVTS--CMITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFERK-GAAVVIR-------DDEEVFAKTEALL 336 (380)
T ss_pred HHHHHHhcc--EEEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhC-CcEEEEC-------CHHHHHHHHHHHH
Confidence 57898877 799999988999999999999985 6667778899888877 8887542 6789999999999
Q ss_pred cCC
Q 043168 418 NET 420 (473)
Q Consensus 418 ~~~ 420 (473)
+|+
T Consensus 337 ~~~ 339 (380)
T PRK13609 337 QDD 339 (380)
T ss_pred CCH
Confidence 998
No 39
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.63 E-value=3.4e-14 Score=141.39 Aligned_cols=107 Identities=17% Similarity=0.178 Sum_probs=68.4
Q ss_pred HHhhcccccceeeeccChhhHHHHHhcCCCEEeccccc--------chhhh-----HHHHHHHHcceEEEecccCCccCH
Q 043168 340 VEILSHKSISAFLSHCGWNSVLEALSHGVPIIGWPLAA--------EQFYN-----SKLLEEVIGVCVEVARGMNCEVSK 406 (473)
Q Consensus 340 ~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~i~~P~~~--------DQ~~~-----a~~v~~~lG~G~~l~~~~~~~~~~ 406 (473)
..+++.++ ++|+.+|.+++ ||+++|+|+|++|... .|..| +..++.. +++..+.. ...++
T Consensus 256 ~~~~~~aD--l~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~---~~~~~ 328 (380)
T PRK00025 256 REAMAAAD--AALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGR-ELVPELLQ---EEATP 328 (380)
T ss_pred HHHHHhCC--EEEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCC-CcchhhcC---CCCCH
Confidence 66777766 79999999887 9999999999985431 12111 2222222 33333333 56789
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHH
Q 043168 407 ENLSAKFELVMNETEKGMDLRKKASEVEMIIKNAVRNEEKFKGSSVKAMEQFLDAA 462 (473)
Q Consensus 407 ~~l~~ai~~~l~~~~~~~~~~~~a~~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~ 462 (473)
+.+.+++.++|+|++.++.++++++++...++ .++..+.++.+.+.+
T Consensus 329 ~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~---------~~a~~~~~~~i~~~~ 375 (380)
T PRK00025 329 EKLARALLPLLADGARRQALLEGFTELHQQLR---------CGADERAAQAVLELL 375 (380)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhC---------CCHHHHHHHHHHHHh
Confidence 99999999999999555555566655554431 333455555554443
No 40
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.59 E-value=1.6e-13 Score=136.80 Aligned_cols=147 Identities=14% Similarity=0.208 Sum_probs=101.5
Q ss_pred CCceEEEEecCcccCCHHHHHHHHHHHHh--CCCcEEEEEcCCCCCCCccchhcccCCchhHHHhhccCCCCeEEecccC
Q 043168 261 CNSVIYVSFGSQNTIAASQMMQLAMALEA--CGKNFIWVVKPPLGFDLNSEFRANEWLPEGFEERIKDSGQGLVVQKWAP 338 (473)
Q Consensus 261 ~~~~V~vs~GS~~~~~~~~~~~~~~al~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 338 (473)
++++|+++.|+.+. ...+..+++++.+ .+.++++++|.+. .+-+.+.+... ...++.+.+|++
T Consensus 201 ~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~~------------~l~~~l~~~~~-~~~~v~~~G~~~ 265 (391)
T PRK13608 201 DKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKSK------------ELKRSLTAKFK-SNENVLILGYTK 265 (391)
T ss_pred CCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCCH------------HHHHHHHHHhc-cCCCeEEEeccc
Confidence 45688888898863 1234444444322 3467766666431 11122332221 135788889997
Q ss_pred h-HHhhcccccceeeeccChhhHHHHHhcCCCEEec-ccccchhhhHHHHHHHHcceEEEecccCCccCHHHHHHHHHHH
Q 043168 339 Q-VEILSHKSISAFLSHCGWNSVLEALSHGVPIIGW-PLAAEQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAKFELV 416 (473)
Q Consensus 339 ~-~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~i~~-P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ai~~~ 416 (473)
+ ..+++.++ ++|+..|..|+.||+++|+|+|+. |..+.|..|+..+.+. |+|+... +.+++.++|.++
T Consensus 266 ~~~~~~~~aD--l~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~-G~g~~~~-------~~~~l~~~i~~l 335 (391)
T PRK13608 266 HMNEWMASSQ--LMITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEEK-GFGKIAD-------TPEEAIKIVASL 335 (391)
T ss_pred hHHHHHHhhh--EEEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhC-CcEEEeC-------CHHHHHHHHHHH
Confidence 6 56888877 799988888999999999999998 6667778999999988 9997643 688999999999
Q ss_pred HcCChhhHHHHHHHHH
Q 043168 417 MNETEKGMDLRKKASE 432 (473)
Q Consensus 417 l~~~~~~~~~~~~a~~ 432 (473)
++|++..+.+++++++
T Consensus 336 l~~~~~~~~m~~~~~~ 351 (391)
T PRK13608 336 TNGNEQLTNMISTMEQ 351 (391)
T ss_pred hcCHHHHHHHHHHHHH
Confidence 9988444444444444
No 41
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.53 E-value=1.3e-15 Score=133.18 Aligned_cols=137 Identities=22% Similarity=0.291 Sum_probs=98.0
Q ss_pred eEEEEecCcccCC-HHHHHHHHHHHHh--CCCcEEEEEcCCCCCCCccchhcccCCchhHHHhhccCCCCeEEecccC-h
Q 043168 264 VIYVSFGSQNTIA-ASQMMQLAMALEA--CGKNFIWVVKPPLGFDLNSEFRANEWLPEGFEERIKDSGQGLVVQKWAP-Q 339 (473)
Q Consensus 264 ~V~vs~GS~~~~~-~~~~~~~~~al~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~ 339 (473)
+|+|+.||.+... ...+..+...+.. ...++++.+|... .......+.+...++.+.+|.+ .
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~--------------~~~~~~~~~~~~~~v~~~~~~~~m 66 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNN--------------YEELKIKVENFNPNVKVFGFVDNM 66 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCE--------------CHHHCCCHCCTTCCCEEECSSSSH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCc--------------HHHHHHHHhccCCcEEEEechhhH
Confidence 4899999887431 1222233333332 2478888887651 1111111111136889999999 6
Q ss_pred HHhhcccccceeeeccChhhHHHHHhcCCCEEeccccc----chhhhHHHHHHHHcceEEEecccCCccCHHHHHHHHHH
Q 043168 340 VEILSHKSISAFLSHCGWNSVLEALSHGVPIIGWPLAA----EQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAKFEL 415 (473)
Q Consensus 340 ~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~i~~P~~~----DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ai~~ 415 (473)
.+++..++ ++|||||.||++|++++|+|+|++|... +|..||..+++. |+|..+.. ...+.+.|.++|.+
T Consensus 67 ~~~m~~aD--lvIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~-g~~~~~~~---~~~~~~~L~~~i~~ 140 (167)
T PF04101_consen 67 AELMAAAD--LVISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKK-GAAIMLDE---SELNPEELAEAIEE 140 (167)
T ss_dssp HHHHHHHS--EEEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHC-CCCCCSEC---CC-SCCCHHHHHHC
T ss_pred HHHHHHcC--EEEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHc-CCccccCc---ccCCHHHHHHHHHH
Confidence 88999977 8999999999999999999999999988 999999999988 99999987 77889999999999
Q ss_pred HHcCC
Q 043168 416 VMNET 420 (473)
Q Consensus 416 ~l~~~ 420 (473)
++.++
T Consensus 141 l~~~~ 145 (167)
T PF04101_consen 141 LLSDP 145 (167)
T ss_dssp HCCCH
T ss_pred HHcCc
Confidence 99888
No 42
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.41 E-value=8e-11 Score=117.12 Aligned_cols=136 Identities=15% Similarity=0.080 Sum_probs=92.5
Q ss_pred CCceEEEEecCcccCCH-HHHHHHHHHHH-----hCCCcEEEEEcCCCCCCCccchhcccCCchhHHHhhccCCCCeEEe
Q 043168 261 CNSVIYVSFGSQNTIAA-SQMMQLAMALE-----ACGKNFIWVVKPPLGFDLNSEFRANEWLPEGFEERIKDSGQGLVVQ 334 (473)
Q Consensus 261 ~~~~V~vs~GS~~~~~~-~~~~~~~~al~-----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 334 (473)
++++|.+..|+...... ..+..+...+. ..+..+++++|.+. .+-+.+.+... ..++.+.
T Consensus 205 ~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~~------------~~~~~L~~~~~--~~~v~~~ 270 (382)
T PLN02605 205 DLPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPIGQVVVICGRNK------------KLQSKLESRDW--KIPVKVR 270 (382)
T ss_pred CCcEEEEECCCcccccHHHHHHHHHHhhccccccCCCceEEEEECCCH------------HHHHHHHhhcc--cCCeEEE
Confidence 45677777776654332 23333333221 23455677776541 01122222111 3467888
Q ss_pred cccCh-HHhhcccccceeeeccChhhHHHHHhcCCCEEecccccchh-hhHHHHHHHHcceEEEecccCCccCHHHHHHH
Q 043168 335 KWAPQ-VEILSHKSISAFLSHCGWNSVLEALSHGVPIIGWPLAAEQF-YNSKLLEEVIGVCVEVARGMNCEVSKENLSAK 412 (473)
Q Consensus 335 ~~~p~-~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~i~~P~~~DQ~-~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~a 412 (473)
.|+++ .++++.++ ++|+.+|.+|+.||+++|+|+|+.+....|. .|+..+.+. |.|+.+ . +++.+.++
T Consensus 271 G~~~~~~~l~~aaD--v~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~~-g~g~~~-~------~~~~la~~ 340 (382)
T PLN02605 271 GFVTNMEEWMGACD--CIITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVDN-GFGAFS-E------SPKEIARI 340 (382)
T ss_pred eccccHHHHHHhCC--EEEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHhC-Cceeec-C------CHHHHHHH
Confidence 99986 66887766 7999999999999999999999998766665 688888877 999754 2 78999999
Q ss_pred HHHHHcC-C
Q 043168 413 FELVMNE-T 420 (473)
Q Consensus 413 i~~~l~~-~ 420 (473)
|.+++.| +
T Consensus 341 i~~ll~~~~ 349 (382)
T PLN02605 341 VAEWFGDKS 349 (382)
T ss_pred HHHHHcCCH
Confidence 9999988 6
No 43
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.32 E-value=3.2e-12 Score=108.04 Aligned_cols=126 Identities=20% Similarity=0.182 Sum_probs=80.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhhcCCCCCCceEEeccCCCCCCCCCCCCCCCCCCCCCC
Q 043168 8 IVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLPFHL 87 (473)
Q Consensus 8 Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~ip~~~~~~~l~~~~~~~~~~~~~~ 87 (473)
|+|++.|+.||++|+++||++|++ |||+|++++++.+.+.++. .|++|.+++.. ..++... ..
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~-rGh~V~~~~~~~~~~~v~~-----~Gl~~~~~~~~---~~~~~~~--------~~ 63 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRR-RGHEVRLATPPDFRERVEA-----AGLEFVPIPGD---SRLPRSL--------EP 63 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHH-TT-EEEEEETGGGHHHHHH-----TT-EEEESSSC---GGGGHHH--------HH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhc-cCCeEEEeecccceecccc-----cCceEEEecCC---cCcCccc--------ch
Confidence 789999999999999999999999 9999999999999999998 56699987621 0000000 00
Q ss_pred chHHHHHHhh--hhHHHHHHHhhhhh-----ccCCCCCeEEEeCCCcchHHHHHHHhCCcEEEEccccHH
Q 043168 88 FPNFFESTLS--FKPHFRKLINGLID-----EQNGHKPVCIIADMFFAWSAEIAQEYGIFNALFVGGGSF 150 (473)
Q Consensus 88 ~~~~~~~~~~--~~~~l~~~l~~~~~-----~~~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~ 150 (473)
...+...... ....+.+.++.... ......+|+++.+.....+..+|+++|||++.....+.+
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~~ 133 (139)
T PF03033_consen 64 LANLRRLARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPWF 133 (139)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGGG
T ss_pred hhhhhhHHHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCcC
Confidence 0111111111 11222223322210 011125788888887778899999999999998665543
No 44
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.32 E-value=3.6e-09 Score=108.18 Aligned_cols=142 Identities=17% Similarity=0.147 Sum_probs=91.3
Q ss_pred eEEEEecCcccCCHHHHHHHHHHHHhC-CCcEEEEEcCCCCCCCccchhcccCCchhHHHhhccCCCCeEEecccChHH-
Q 043168 264 VIYVSFGSQNTIAASQMMQLAMALEAC-GKNFIWVVKPPLGFDLNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVE- 341 (473)
Q Consensus 264 ~V~vs~GS~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~- 341 (473)
.+++..|+... ...+..++++++.. +.+++ ++|.+. ..+.+.+... ..++.+..|+++.+
T Consensus 264 ~~i~~vGrl~~--~K~~~~li~a~~~~~~~~l~-ivG~G~-------------~~~~l~~~~~--~~~V~f~G~v~~~ev 325 (465)
T PLN02871 264 PLIVYVGRLGA--EKNLDFLKRVMERLPGARLA-FVGDGP-------------YREELEKMFA--GTPTVFTGMLQGDEL 325 (465)
T ss_pred eEEEEeCCCch--hhhHHHHHHHHHhCCCcEEE-EEeCCh-------------HHHHHHHHhc--cCCeEEeccCCHHHH
Confidence 45566687753 33455566777664 45544 455431 2233433333 45788889998644
Q ss_pred --hhcccccceeeeccC----hhhHHHHHhcCCCEEecccccchhhhHHHHHH---HHcceEEEecccCCccCHHHHHHH
Q 043168 342 --ILSHKSISAFLSHCG----WNSVLEALSHGVPIIGWPLAAEQFYNSKLLEE---VIGVCVEVARGMNCEVSKENLSAK 412 (473)
Q Consensus 342 --lL~~~~~~~~I~HgG----~gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~---~lG~G~~l~~~~~~~~~~~~l~~a 412 (473)
+++.++ ++|.-.. ..++.||+++|+|+|+.... .....+.. . +.|...+. -+.++++++
T Consensus 326 ~~~~~~aD--v~V~pS~~E~~g~~vlEAmA~G~PVI~s~~g----g~~eiv~~~~~~-~~G~lv~~-----~d~~~la~~ 393 (465)
T PLN02871 326 SQAYASGD--VFVMPSESETLGFVVLEAMASGVPVVAARAG----GIPDIIPPDQEG-KTGFLYTP-----GDVDDCVEK 393 (465)
T ss_pred HHHHHHCC--EEEECCcccccCcHHHHHHHcCCCEEEcCCC----CcHhhhhcCCCC-CceEEeCC-----CCHHHHHHH
Confidence 666766 5765433 34688999999999987543 23344444 5 77877765 378999999
Q ss_pred HHHHHcCChhhHHHHHHHHHHHH
Q 043168 413 FELVMNETEKGMDLRKKASEVEM 435 (473)
Q Consensus 413 i~~~l~~~~~~~~~~~~a~~~~~ 435 (473)
|.++++|++..+.+.+++++..+
T Consensus 394 i~~ll~~~~~~~~~~~~a~~~~~ 416 (465)
T PLN02871 394 LETLLADPELRERMGAAAREEVE 416 (465)
T ss_pred HHHHHhCHHHHHHHHHHHHHHHH
Confidence 99999998555667777766543
No 45
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.28 E-value=2.1e-09 Score=106.78 Aligned_cols=137 Identities=23% Similarity=0.210 Sum_probs=89.4
Q ss_pred CceEEEEecCcccCCHHHHHHHHHHHHh----CCCcEEEEEcCCCCCCCccchhcccCCchhHHHhhcc-C---------
Q 043168 262 NSVIYVSFGSQNTIAASQMMQLAMALEA----CGKNFIWVVKPPLGFDLNSEFRANEWLPEGFEERIKD-S--------- 327 (473)
Q Consensus 262 ~~~V~vs~GS~~~~~~~~~~~~~~al~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------- 327 (473)
+++|.+--||........+..+++++.. .+..|++.+.... ..+.+...+.+ +
T Consensus 205 ~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~-------------~~~~~~~~l~~~g~~~~~~~~~ 271 (396)
T TIGR03492 205 RFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSL-------------SLEKLQAILEDLGWQLEGSSED 271 (396)
T ss_pred CCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCC-------------CHHHHHHHHHhcCceecCCccc
Confidence 4588898999864333334444444444 3577777774331 11122221110 0
Q ss_pred ------CCCeEEecccCh-HHhhcccccceeeeccChhhHHHHHhcCCCEEecccccchhhhHHHHHHH---HcceEEEe
Q 043168 328 ------GQGLVVQKWAPQ-VEILSHKSISAFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEV---IGVCVEVA 397 (473)
Q Consensus 328 ------~~~v~~~~~~p~-~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~---lG~G~~l~ 397 (473)
..++.+..+..+ ..+++.++ ++|+-+|..| .|+..+|+|+|++|+...|. |+...++. +|.++.+.
T Consensus 272 ~~~~~~~~~~~v~~~~~~~~~~l~~AD--lvI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na~~~~~~~~l~g~~~~l~ 347 (396)
T TIGR03492 272 QTSLFQKGTLEVLLGRGAFAEILHWAD--LGIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TYGFAEAQSRLLGGSVFLA 347 (396)
T ss_pred cchhhccCceEEEechHhHHHHHHhCC--EEEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HHHHHHhhHhhcCCEEecC
Confidence 123455455444 66888866 8999999766 99999999999999877786 88766642 26666654
Q ss_pred cccCCccCHHHHHHHHHHHHcCC
Q 043168 398 RGMNCEVSKENLSAKFELVMNET 420 (473)
Q Consensus 398 ~~~~~~~~~~~l~~ai~~~l~~~ 420 (473)
. .+.+.+.+++.++|+|+
T Consensus 348 ~-----~~~~~l~~~l~~ll~d~ 365 (396)
T TIGR03492 348 S-----KNPEQAAQVVRQLLADP 365 (396)
T ss_pred C-----CCHHHHHHHHHHHHcCH
Confidence 3 45599999999999988
No 46
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.23 E-value=2.1e-08 Score=98.47 Aligned_cols=95 Identities=14% Similarity=0.155 Sum_probs=69.4
Q ss_pred CCCeEEecccChHH---hhcccccceeeeccC----hhhHHHHHhcCCCEEecccccchhhhHHHHHHHHcceEEEeccc
Q 043168 328 GQGLVVQKWAPQVE---ILSHKSISAFLSHCG----WNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGM 400 (473)
Q Consensus 328 ~~~v~~~~~~p~~~---lL~~~~~~~~I~HgG----~gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~ 400 (473)
..++.+..|+++.+ +++.++ ++|+.+. .+++.||+++|+|+|+.+... +...+... +.|.....
T Consensus 246 ~~~v~~~g~~~~~~~~~~~~~~d--~~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~----~~~~i~~~-~~g~~~~~-- 316 (364)
T cd03814 246 YPNVHFLGFLDGEELAAAYASAD--VFVFPSRTETFGLVVLEAMASGLPVVAPDAGG----PADIVTDG-ENGLLVEP-- 316 (364)
T ss_pred CCcEEEEeccCHHHHHHHHHhCC--EEEECcccccCCcHHHHHHHcCCCEEEcCCCC----chhhhcCC-cceEEcCC--
Confidence 67889999998755 677766 6776654 468999999999999887543 44555555 78877654
Q ss_pred CCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 043168 401 NCEVSKENLSAKFELVMNETEKGMDLRKKASEVE 434 (473)
Q Consensus 401 ~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~~~ 434 (473)
.+.+++.+++.+++.|++..+.+.+++.+..
T Consensus 317 ---~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~ 347 (364)
T cd03814 317 ---GDAEAFAAALAALLADPELRRRMAARARAEA 347 (364)
T ss_pred ---CCHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 4778899999999999844444554444443
No 47
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.23 E-value=1.5e-09 Score=97.60 Aligned_cols=292 Identities=17% Similarity=0.162 Sum_probs=180.2
Q ss_pred ceEEEEcCC----CccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhhcCCCCCCceEEeccCCCCCCCCCCCCCCCC
Q 043168 6 ENIVMFPLM----AQGHIIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSD 81 (473)
Q Consensus 6 ~~Il~~~~~----~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~ip~~~~~~~l~~~~~~~~ 81 (473)
+||+|++-+ +.||+.+++.||++|.. +|..++|++.+...+.+-+ .. .++.+. ...
T Consensus 1 M~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k-~~~~~~fl~k~~~e~~~~~-~~--~~f~~~------------~~~---- 60 (318)
T COG3980 1 MKVLIRCDGGLEIGMGHVMRTLTLARELEK-RGFACLFLTKQDIEAIIHK-VY--EGFKVL------------EGR---- 60 (318)
T ss_pred CcEEEEecCCcccCcchhhhHHHHHHHHHh-cCceEEEecccchhhhhhh-hh--hhccce------------eee----
Confidence 378887754 78999999999999999 9999999998765543322 00 011100 000
Q ss_pred CCCCCCchHHHHHHhhhhHHHHHHHhhhhhccCCCCCeEEEeCCCcchH---HHHHHHhCCcEEEEccccHHHHHHHHhh
Q 043168 82 SLPFHLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWS---AEIAQEYGIFNALFVGGGSFGFACFYSL 158 (473)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~~~~---~~~A~~~giP~v~~~~~~~~~~~~~~~~ 158 (473)
....|++. ++|++|.|.+...+ ..+..+.+.+.+.+-.-....+....
T Consensus 61 --------------------~~n~ik~~-------k~d~lI~Dsygl~~dd~k~ik~e~~~k~l~fDd~~~~~~~d~d-- 111 (318)
T COG3980 61 --------------------GNNLIKEE-------KFDLLIFDSYGLNADDFKLIKEEAGSKILIFDDENAKSFKDND-- 111 (318)
T ss_pred --------------------cccccccc-------cCCEEEEeccCCCHHHHHHHHHHhCCcEEEecCCCccchhhhH--
Confidence 01156777 99999999988744 46778999999988332222211000
Q ss_pred hhcCCCCCCCCcccCCCCCCcccchhhhhhhhhccCCCChHHHHHHHHhhhcccCceEEecchhhhccccCccccCCCCC
Q 043168 159 WLNLPHRDSDEFLLPDFPEASRIHVTQMTKFLRLADGSDSLSVFFQKVLPQWMNADGILFNTVEELDKIVGPLLLSTGSR 238 (473)
Q Consensus 159 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~vGp~~~~~~~~ 238 (473)
..+..... + -.....+.+...-+ .||-...-
T Consensus 112 -------------------------~ivN~~~~-----a-------------~~~y~~v~~k~~~~---lGp~y~~l--- 142 (318)
T COG3980 112 -------------------------LIVNAILN-----A-------------NDYYGLVPNKTRYY---LGPGYAPL--- 142 (318)
T ss_pred -------------------------hhhhhhhc-----c-------------hhhccccCcceEEE---ecCCceec---
Confidence 00000000 0 00000111111111 13322211
Q ss_pred CCCCCCCCCCchhh----hhhhccCCCCceEEEEecCcccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCccchhccc
Q 043168 239 AGAGKEYGISTESC----KNWLDTKPCNSVIYVSFGSQNTIAASQMMQLAMALEACGKNFIWVVKPPLGFDLNSEFRANE 314 (473)
Q Consensus 239 ~~~~~~~~~~~~~l----~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~ 314 (473)
+++. ...+.+ ++.-|+|++|-.- .....-+++..|.+..+.+-+++|.. +
T Consensus 143 ----------r~eF~~~r~~~~~r--~~r~ilI~lGGsD--pk~lt~kvl~~L~~~~~nl~iV~gs~------------~ 196 (318)
T COG3980 143 ----------RPEFYALREENTER--PKRDILITLGGSD--PKNLTLKVLAELEQKNVNLHIVVGSS------------N 196 (318)
T ss_pred ----------cHHHHHhHHHHhhc--chheEEEEccCCC--hhhhHHHHHHHhhccCeeEEEEecCC------------C
Confidence 1111 111111 2336999998763 34456677888888777777777744 2
Q ss_pred CCchhHHHhhccCCCCeEEecccC-hHHhhcccccceeeeccChhhHHHHHhcCCCEEecccccchhhhHHHHHHHHcce
Q 043168 315 WLPEGFEERIKDSGQGLVVQKWAP-QVEILSHKSISAFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVC 393 (473)
Q Consensus 315 ~~~~~~~~~~~~~~~~v~~~~~~p-~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G 393 (473)
..+.+++.++.. .+++....... ...++..++ +.|+-||. |+.|++..|+|.+++|+..-|--.|+..++. |+-
T Consensus 197 p~l~~l~k~~~~-~~~i~~~~~~~dma~LMke~d--~aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~l-g~~ 271 (318)
T COG3980 197 PTLKNLRKRAEK-YPNINLYIDTNDMAELMKEAD--LAISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEFEAL-GII 271 (318)
T ss_pred cchhHHHHHHhh-CCCeeeEecchhHHHHHHhcc--hheeccch-HHHHHHHhcCCceEEeeeccHHHHHHHHHhc-Cch
Confidence 234455554442 45555545555 356888866 79998886 8999999999999999999999999999966 988
Q ss_pred EEEecccCCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 043168 394 VEVARGMNCEVSKENLSAKFELVMNETEKGMDLRKKASEVE 434 (473)
Q Consensus 394 ~~l~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~~~ 434 (473)
..+.. .++.+....-+.++..|. ..|.+.....
T Consensus 272 ~~l~~----~l~~~~~~~~~~~i~~d~----~~rk~l~~~~ 304 (318)
T COG3980 272 KQLGY----HLKDLAKDYEILQIQKDY----ARRKNLSFGS 304 (318)
T ss_pred hhccC----CCchHHHHHHHHHhhhCH----HHhhhhhhcc
Confidence 88875 478888888888898888 6665554433
No 48
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.12 E-value=1.3e-07 Score=93.35 Aligned_cols=148 Identities=15% Similarity=0.172 Sum_probs=89.4
Q ss_pred CceEEEEecCcccC-CHHHHHHHHHHHHhC-CCcEEEEEcCCCCCCCccchhcccCCchhHHHhh-ccCCCCeEEecccC
Q 043168 262 NSVIYVSFGSQNTI-AASQMMQLAMALEAC-GKNFIWVVKPPLGFDLNSEFRANEWLPEGFEERI-KDSGQGLVVQKWAP 338 (473)
Q Consensus 262 ~~~V~vs~GS~~~~-~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~p 338 (473)
++.+++..|+.... +.+.+..++..+... +..++ ++|.+. ..+.+.+.. .....++.+..+++
T Consensus 219 ~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l~-i~G~~~-------------~~~~~~~~~~~~~~~~v~~~g~~~ 284 (394)
T cd03794 219 DKFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIRFL-IVGDGP-------------EKEELKELAKALGLDNVTFLGRVP 284 (394)
T ss_pred CcEEEEEecCcccccCHHHHHHHHHHHhhcCCeEEE-EeCCcc-------------cHHHHHHHHHHcCCCcEEEeCCCC
Confidence 44677777877542 234444444444443 45544 345431 112222210 11157899889998
Q ss_pred hHH---hhcccccceeeeccC---------hhhHHHHHhcCCCEEecccccchhhhHHHHHHHHcceEEEecccCCccCH
Q 043168 339 QVE---ILSHKSISAFLSHCG---------WNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMNCEVSK 406 (473)
Q Consensus 339 ~~~---lL~~~~~~~~I~HgG---------~gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~ 406 (473)
+.+ ++..++ ++|.... -+++.||+++|+|+|+.+....+.. +... +.|..... -+.
T Consensus 285 ~~~~~~~~~~~d--i~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~~----~~~~-~~g~~~~~-----~~~ 352 (394)
T cd03794 285 KEELPELLAAAD--VGLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAEL----VEEA-GAGLVVPP-----GDP 352 (394)
T ss_pred hHHHHHHHHhhC--eeEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchhh----hccC-CcceEeCC-----CCH
Confidence 654 566766 4554322 2347999999999999887654443 2323 66766654 388
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHHHH
Q 043168 407 ENLSAKFELVMNETEKGMDLRKKASEVEM 435 (473)
Q Consensus 407 ~~l~~ai~~~l~~~~~~~~~~~~a~~~~~ 435 (473)
+++++++.+++.|++..+.+++++++...
T Consensus 353 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~~ 381 (394)
T cd03794 353 EALAAAILELLDDPEERAEMGENGRRYVE 381 (394)
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 99999999999988555555555555444
No 49
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.11 E-value=1.5e-07 Score=92.48 Aligned_cols=97 Identities=15% Similarity=0.175 Sum_probs=68.1
Q ss_pred CCCeEEecccChHH---hhcccccceeeecc----ChhhHHHHHhcCCCEEecccccchhhhHHHHHHHHcceEEEeccc
Q 043168 328 GQGLVVQKWAPQVE---ILSHKSISAFLSHC----GWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGM 400 (473)
Q Consensus 328 ~~~v~~~~~~p~~~---lL~~~~~~~~I~Hg----G~gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~ 400 (473)
..++....++|+.+ ++..++ ++|..+ ...++.||+++|+|+|+.+. ...+..+... +.|..+..
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad--~~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~----~~~~~~i~~~-~~g~~~~~-- 328 (374)
T cd03817 258 ADRVIFTGFVPREELPDYYKAAD--LFVFASTTETQGLVLLEAMAAGLPVVAVDA----PGLPDLVADG-ENGFLFPP-- 328 (374)
T ss_pred CCcEEEeccCChHHHHHHHHHcC--EEEecccccCcChHHHHHHHcCCcEEEeCC----CChhhheecC-ceeEEeCC--
Confidence 56889999998754 577766 455333 34689999999999998653 3455566655 67777765
Q ss_pred CCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 043168 401 NCEVSKENLSAKFELVMNETEKGMDLRKKASEVEMII 437 (473)
Q Consensus 401 ~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~~~~~~ 437 (473)
. +. ++.+++.+++++++..+.+++++++..+..
T Consensus 329 -~--~~-~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~ 361 (374)
T cd03817 329 -G--DE-ALAEALLRLLQDPELRRRLSKNAEESAEKF 361 (374)
T ss_pred -C--CH-HHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 2 22 899999999999854445666655555543
No 50
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.06 E-value=1e-07 Score=93.34 Aligned_cols=142 Identities=15% Similarity=0.135 Sum_probs=85.1
Q ss_pred CceEEEEecCcccC-CHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCccchhcccCCchhHHHhhccCCCCeEEecccChH
Q 043168 262 NSVIYVSFGSQNTI-AASQMMQLAMALEACGKNFIWVVKPPLGFDLNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQV 340 (473)
Q Consensus 262 ~~~V~vs~GS~~~~-~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 340 (473)
++.+++..|+.... +.+.+..++..+...+..+++ +|... ......... ....++.+..|+++.
T Consensus 190 ~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~l~i-~G~~~-------------~~~~~~~~~-~~~~~v~~~g~~~~~ 254 (359)
T cd03823 190 GRLRFGFIGQLTPHKGVDLLLEAFKRLPRGDIELVI-VGNGL-------------ELEEESYEL-EGDPRVEFLGAYPQE 254 (359)
T ss_pred CceEEEEEecCccccCHHHHHHHHHHHHhcCcEEEE-EcCch-------------hhhHHHHhh-cCCCeEEEeCCCCHH
Confidence 44666777877532 234444444444433455544 44431 001111000 115788999999765
Q ss_pred H---hhcccccceeee----ccCh-hhHHHHHhcCCCEEecccccchhhhHHHHHHHHcceEEEecccCCccCHHHHHHH
Q 043168 341 E---ILSHKSISAFLS----HCGW-NSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAK 412 (473)
Q Consensus 341 ~---lL~~~~~~~~I~----HgG~-gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~a 412 (473)
+ +++.++ ++|+ ..|. .++.||+++|+|+|+.+. ..+...+... +.|..... -+.+++.++
T Consensus 255 ~~~~~~~~ad--~~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i~~~-~~g~~~~~-----~d~~~l~~~ 322 (359)
T cd03823 255 EIDDFYAEID--VLVVPSIWPENFPLVIREALAAGVPVIASDI----GGMAELVRDG-VNGLLFPP-----GDAEDLAAA 322 (359)
T ss_pred HHHHHHHhCC--EEEEcCcccCCCChHHHHHHHCCCCEEECCC----CCHHHHhcCC-CcEEEECC-----CCHHHHHHH
Confidence 4 577766 5553 2333 478999999999998654 3455566644 57877765 368999999
Q ss_pred HHHHHcCChhhHHHHHHH
Q 043168 413 FELVMNETEKGMDLRKKA 430 (473)
Q Consensus 413 i~~~l~~~~~~~~~~~~a 430 (473)
+.++++|++..+.+++++
T Consensus 323 i~~l~~~~~~~~~~~~~~ 340 (359)
T cd03823 323 LERLIDDPDLLERLRAGI 340 (359)
T ss_pred HHHHHhChHHHHHHHHhH
Confidence 999999884433444433
No 51
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.06 E-value=2.4e-07 Score=93.25 Aligned_cols=92 Identities=17% Similarity=0.286 Sum_probs=62.8
Q ss_pred CCeEEe-cccChHH---hhcccccceeee-c---cC---hhhHHHHHhcCCCEEecccccchhhhHHHHHHHHcceEEEe
Q 043168 329 QGLVVQ-KWAPQVE---ILSHKSISAFLS-H---CG---WNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVA 397 (473)
Q Consensus 329 ~~v~~~-~~~p~~~---lL~~~~~~~~I~-H---gG---~gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~ 397 (473)
+++... .|+|..+ +|+.+++ +|. + -| -+++.||+++|+|+|+... ......+++. +.|...
T Consensus 294 ~~~~~~~g~~~~~~~~~~l~~aDv--~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~----~~~~eiv~~~-~~G~lv- 365 (415)
T cd03816 294 KKVTIRTPWLSAEDYPKLLASADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCALDF----KCIDELVKHG-ENGLVF- 365 (415)
T ss_pred CcEEEEcCcCCHHHHHHHHHhCCE--EEEccccccccCCcHHHHHHHHcCCCEEEeCC----CCHHHHhcCC-CCEEEE-
Confidence 566644 5887544 5777774 552 1 12 3479999999999998643 3455566655 678765
Q ss_pred cccCCccCHHHHHHHHHHHHcC---ChhhHHHHHHHHHHH
Q 043168 398 RGMNCEVSKENLSAKFELVMNE---TEKGMDLRKKASEVE 434 (473)
Q Consensus 398 ~~~~~~~~~~~l~~ai~~~l~~---~~~~~~~~~~a~~~~ 434 (473)
. +.++++++|..+++| ++..+.+++++++..
T Consensus 366 ~------d~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 366 G------DSEELAEQLIDLLSNFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred C------CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Confidence 2 689999999999999 655556666666554
No 52
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.01 E-value=2.3e-07 Score=92.63 Aligned_cols=94 Identities=12% Similarity=0.145 Sum_probs=67.8
Q ss_pred CCCeEEecccChHH---hhcccccceeeecc---C-hhhHHHHHhcCCCEEecccccchhhhHHHHHHHHcceEEEeccc
Q 043168 328 GQGLVVQKWAPQVE---ILSHKSISAFLSHC---G-WNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGM 400 (473)
Q Consensus 328 ~~~v~~~~~~p~~~---lL~~~~~~~~I~Hg---G-~gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~ 400 (473)
..++.+..|+|+.+ ++..++ ++++.+ | ..++.||+++|+|+|+.+.. .....+++. +.|...+.
T Consensus 282 ~~~v~~~g~~~~~~~~~~~~~ad--i~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~----~~~e~i~~~-~~g~~~~~-- 352 (398)
T cd03800 282 IDRVDFPGRVSREDLPALYRAAD--VFVNPALYEPFGLTALEAMACGLPVVATAVG----GPRDIVVDG-VTGLLVDP-- 352 (398)
T ss_pred CceEEEeccCCHHHHHHHHHhCC--EEEecccccccCcHHHHHHhcCCCEEECCCC----CHHHHccCC-CCeEEeCC--
Confidence 46888999999865 477766 566432 2 35899999999999987643 345556655 68887764
Q ss_pred CCccCHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 043168 401 NCEVSKENLSAKFELVMNETEKGMDLRKKASEV 433 (473)
Q Consensus 401 ~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~~ 433 (473)
.+.++++++|.+++++++..+.+.+++++.
T Consensus 353 ---~~~~~l~~~i~~l~~~~~~~~~~~~~a~~~ 382 (398)
T cd03800 353 ---RDPEALAAALRRLLTDPALRRRLSRAGLRR 382 (398)
T ss_pred ---CCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 379999999999999884544555555544
No 53
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.01 E-value=6e-07 Score=87.45 Aligned_cols=147 Identities=15% Similarity=0.139 Sum_probs=87.4
Q ss_pred CceEEEEecCcccC-CHHHHHHHHHHHHh--CCCcEEEEEcCCCCCCCccchhcccCCchhH--HHhhccCCCCeEEecc
Q 043168 262 NSVIYVSFGSQNTI-AASQMMQLAMALEA--CGKNFIWVVKPPLGFDLNSEFRANEWLPEGF--EERIKDSGQGLVVQKW 336 (473)
Q Consensus 262 ~~~V~vs~GS~~~~-~~~~~~~~~~al~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~ 336 (473)
++.+++..|+.... +.+.+.+++..+.+ .+..+++ +|... ....... .... ....++....+
T Consensus 187 ~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i-~G~~~-----------~~~~~~~~~~~~~-~~~~~v~~~g~ 253 (359)
T cd03808 187 DDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLL-VGDGD-----------EENPAAILEIEKL-GLEGRVEFLGF 253 (359)
T ss_pred CCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEE-EcCCC-----------cchhhHHHHHHhc-CCcceEEEeec
Confidence 44677888887543 33444455555543 3344443 44431 0000000 1111 11457777776
Q ss_pred cCh-HHhhcccccceeeeccC----hhhHHHHHhcCCCEEecccccchhhhHHHHHHHHcceEEEecccCCccCHHHHHH
Q 043168 337 APQ-VEILSHKSISAFLSHCG----WNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSA 411 (473)
Q Consensus 337 ~p~-~~lL~~~~~~~~I~HgG----~gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ 411 (473)
..+ ..++..++ ++|..+. .+++.||+++|+|+|+.+.. .....+.+. +.|...+. -+.+++.+
T Consensus 254 ~~~~~~~~~~ad--i~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~----~~~~~i~~~-~~g~~~~~-----~~~~~~~~ 321 (359)
T cd03808 254 RDDVPELLAAAD--VFVLPSYREGLPRVLLEAMAMGRPVIATDVP----GCREAVIDG-VNGFLVPP-----GDAEALAD 321 (359)
T ss_pred cccHHHHHHhcc--EEEecCcccCcchHHHHHHHcCCCEEEecCC----CchhhhhcC-cceEEECC-----CCHHHHHH
Confidence 544 56788877 5665432 56899999999999986543 334455545 67776654 47899999
Q ss_pred HHHHHHcCChhhHHHHHHHHHH
Q 043168 412 KFELVMNETEKGMDLRKKASEV 433 (473)
Q Consensus 412 ai~~~l~~~~~~~~~~~~a~~~ 433 (473)
++.+++.|++..+.+.+++++.
T Consensus 322 ~i~~l~~~~~~~~~~~~~~~~~ 343 (359)
T cd03808 322 AIERLIEDPELRARMGQAARKR 343 (359)
T ss_pred HHHHHHhCHHHHHHHHHHHHHH
Confidence 9999999985544555555544
No 54
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.00 E-value=8.9e-07 Score=87.61 Aligned_cols=94 Identities=16% Similarity=0.100 Sum_probs=66.1
Q ss_pred CCCeEEecccCh-HHhhcccccceeeec----cChhhHHHHHhcCCCEEecccccchhhhHHHHHHHHcceEEEecccCC
Q 043168 328 GQGLVVQKWAPQ-VEILSHKSISAFLSH----CGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMNC 402 (473)
Q Consensus 328 ~~~v~~~~~~p~-~~lL~~~~~~~~I~H----gG~gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~ 402 (473)
..++.+..+.++ ..++..++ ++|.- |.-.++.||+++|+|+|+.. ....+..+++. ..|...+.
T Consensus 252 ~~~v~~~g~~~~~~~~~~~~d--~~v~ps~~E~~~~~~~EAma~g~PvI~s~----~~~~~e~i~~~-~~G~~~~~---- 320 (371)
T cd04962 252 QDDVLFLGKQDHVEELLSIAD--LFLLPSEKESFGLAALEAMACGVPVVASN----AGGIPEVVKHG-ETGFLVDV---- 320 (371)
T ss_pred CceEEEecCcccHHHHHHhcC--EEEeCCCcCCCccHHHHHHHcCCCEEEeC----CCCchhhhcCC-CceEEcCC----
Confidence 356877788765 56787766 45522 33459999999999999864 34455555544 56766554
Q ss_pred ccCHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 043168 403 EVSKENLSAKFELVMNETEKGMDLRKKASEV 433 (473)
Q Consensus 403 ~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~~ 433 (473)
-+.+++.+++.++++|++..+.+++++++.
T Consensus 321 -~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ 350 (371)
T cd04962 321 -GDVEAMAEYALSLLEDDELWQEFSRAARNR 350 (371)
T ss_pred -CCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 478999999999999885555666666665
No 55
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.97 E-value=4.3e-07 Score=89.89 Aligned_cols=85 Identities=20% Similarity=0.177 Sum_probs=61.6
Q ss_pred CCCeEEecccChH---HhhcccccceeeeccChhhHHHHHhcCCCEEecccccchhhhHHHHHHHHcceEEEecccCCcc
Q 043168 328 GQGLVVQKWAPQV---EILSHKSISAFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMNCEV 404 (473)
Q Consensus 328 ~~~v~~~~~~p~~---~lL~~~~~~~~I~HgG~gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~~~ 404 (473)
..++.+.+.+++. .+++.++ ++|+..|.. +.||.++|+|+|.++...+++. +... |.++.+..
T Consensus 254 ~~~v~~~~~~~~~~~~~~l~~ad--~vv~~Sg~~-~~EA~a~g~PvI~~~~~~~~~e----~~~~-g~~~lv~~------ 319 (365)
T TIGR00236 254 SKRVHLIEPLEYLDFLNLAANSH--LILTDSGGV-QEEAPSLGKPVLVLRDTTERPE----TVEA-GTNKLVGT------ 319 (365)
T ss_pred CCCEEEECCCChHHHHHHHHhCC--EEEECChhH-HHHHHHcCCCEEECCCCCCChH----HHhc-CceEEeCC------
Confidence 4578887776654 4556655 789987754 7999999999999976555553 2235 77765543
Q ss_pred CHHHHHHHHHHHHcCChhhHHHHHHH
Q 043168 405 SKENLSAKFELVMNETEKGMDLRKKA 430 (473)
Q Consensus 405 ~~~~l~~ai~~~l~~~~~~~~~~~~a 430 (473)
+++.+.+++.++++|+ ..+++.
T Consensus 320 d~~~i~~ai~~ll~~~----~~~~~~ 341 (365)
T TIGR00236 320 DKENITKAAKRLLTDP----DEYKKM 341 (365)
T ss_pred CHHHHHHHHHHHHhCh----HHHHHh
Confidence 7899999999999988 555443
No 56
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=98.97 E-value=8.6e-07 Score=89.64 Aligned_cols=97 Identities=16% Similarity=0.214 Sum_probs=66.8
Q ss_pred eEEecccCh-HHhhcccccceeee----ccChhhHHHHHhcCCCEEecccccchhhhHHHHHHHHcceEEEecccCCccC
Q 043168 331 LVVQKWAPQ-VEILSHKSISAFLS----HCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMNCEVS 405 (473)
Q Consensus 331 v~~~~~~p~-~~lL~~~~~~~~I~----HgG~gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~~~~ 405 (473)
+.+.+...+ ..+++.+++ +|+. -+|..++.||+++|+|+|+.|...++......+.+. |+++... +
T Consensus 304 v~l~~~~~el~~~y~~aDi-~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~-g~~~~~~-------d 374 (425)
T PRK05749 304 VLLGDTMGELGLLYAIADI-AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQA-GAAIQVE-------D 374 (425)
T ss_pred EEEEecHHHHHHHHHhCCE-EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHC-CCeEEEC-------C
Confidence 344343333 556777774 2442 133446899999999999999988888888777656 7665532 6
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q 043168 406 KENLSAKFELVMNETEKGMDLRKKASEVEMI 436 (473)
Q Consensus 406 ~~~l~~ai~~~l~~~~~~~~~~~~a~~~~~~ 436 (473)
++++++++.++++|++..+.+.++++++...
T Consensus 375 ~~~La~~l~~ll~~~~~~~~m~~~a~~~~~~ 405 (425)
T PRK05749 375 AEDLAKAVTYLLTDPDARQAYGEAGVAFLKQ 405 (425)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 8999999999999985555566555554433
No 57
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=98.96 E-value=1e-06 Score=85.37 Aligned_cols=97 Identities=19% Similarity=0.211 Sum_probs=65.3
Q ss_pred CCCeEEecccCh-HHhhcccccceeeeccC----hhhHHHHHhcCCCEEecccccchhhhHHHHHHHHc-ceEEEecccC
Q 043168 328 GQGLVVQKWAPQ-VEILSHKSISAFLSHCG----WNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIG-VCVEVARGMN 401 (473)
Q Consensus 328 ~~~v~~~~~~p~-~~lL~~~~~~~~I~HgG----~gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG-~G~~l~~~~~ 401 (473)
..++....+... ..++..++ ++|.... -+++.||+++|+|+|+.+....+. .+... | .|...+.
T Consensus 234 ~~~v~~~g~~~~~~~~~~~ad--~~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~----~~~~~-~~~g~~~~~--- 303 (348)
T cd03820 234 EDRVILLGFTKNIEEYYAKAS--IFVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPS----EIIED-GVNGLLVPN--- 303 (348)
T ss_pred CCeEEEcCCcchHHHHHHhCC--EEEeCccccccCHHHHHHHHcCCCEEEecCCCchH----hhhcc-CcceEEeCC---
Confidence 356666666333 56787766 5665542 468999999999999876544332 23334 5 7776654
Q ss_pred CccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q 043168 402 CEVSKENLSAKFELVMNETEKGMDLRKKASEVEMI 436 (473)
Q Consensus 402 ~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~~~~~ 436 (473)
.+.++++++|.++++|++..+.++++++++.+.
T Consensus 304 --~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~ 336 (348)
T cd03820 304 --GDVEALAEALLRLMEDEELRKRMGANARESAER 336 (348)
T ss_pred --CCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 478999999999999995555566665554443
No 58
>PRK10307 putative glycosyl transferase; Provisional
Probab=98.94 E-value=7.3e-06 Score=82.51 Aligned_cols=98 Identities=17% Similarity=0.131 Sum_probs=67.0
Q ss_pred CCCeEEecccChHH---hhcccccceeeeccCh------hhHHHHHhcCCCEEecccccchhhhHHHHHHHHcceEEEec
Q 043168 328 GQGLVVQKWAPQVE---ILSHKSISAFLSHCGW------NSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVAR 398 (473)
Q Consensus 328 ~~~v~~~~~~p~~~---lL~~~~~~~~I~HgG~------gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~ 398 (473)
..++.+..|+|+.+ +++.+++.++.+..+. +.+.|++++|+|+|+....+. .....+. +.|+..+.
T Consensus 283 l~~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~--~~~~~i~---~~G~~~~~ 357 (412)
T PRK10307 283 LPNVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGT--ELGQLVE---GIGVCVEP 357 (412)
T ss_pred CCceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCc--hHHHHHh---CCcEEeCC
Confidence 45788889998754 6778786444444332 236899999999999864331 1122232 67777764
Q ss_pred ccCCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHH
Q 043168 399 GMNCEVSKENLSAKFELVMNETEKGMDLRKKASEVEM 435 (473)
Q Consensus 399 ~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~~~~ 435 (473)
-+.++++++|.++++|++..+.+++++++..+
T Consensus 358 -----~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~~ 389 (412)
T PRK10307 358 -----ESVEALVAAIAALARQALLRPKLGTVAREYAE 389 (412)
T ss_pred -----CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 47899999999999988555667777766543
No 59
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.93 E-value=2.2e-07 Score=91.89 Aligned_cols=134 Identities=16% Similarity=0.125 Sum_probs=83.5
Q ss_pred CCceEEEEecCcccC-CHHHHHHHHHHHHhCCC-cEEEEEcCCCCCCCccchhcccCCchhHHHhhccC---CCCeEEec
Q 043168 261 CNSVIYVSFGSQNTI-AASQMMQLAMALEACGK-NFIWVVKPPLGFDLNSEFRANEWLPEGFEERIKDS---GQGLVVQK 335 (473)
Q Consensus 261 ~~~~V~vs~GS~~~~-~~~~~~~~~~al~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~ 335 (473)
+++.|++++|..... ....+..+++++..... ++.++..... .....+.+...+. ..++.+..
T Consensus 197 ~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~------------~~~~~l~~~~~~~~~~~~~v~~~~ 264 (363)
T cd03786 197 PKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHP------------RTRPRIREAGLEFLGHHPNVLLIS 264 (363)
T ss_pred CCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCC------------ChHHHHHHHHHhhccCCCCEEEEC
Confidence 355788888877643 34566777777766432 2444433221 0112333322111 35777766
Q ss_pred ccChH---HhhcccccceeeeccChhhHHHHHhcCCCEEecccccchhhhHHHHHHHHcceEEEecccCCccCHHHHHHH
Q 043168 336 WAPQV---EILSHKSISAFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAK 412 (473)
Q Consensus 336 ~~p~~---~lL~~~~~~~~I~HgG~gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~a 412 (473)
..++. .++..++ +||+.+| |.+.||+++|+|+|+++.. |. ++.+.+. |+++.+.. +.+.+.++
T Consensus 265 ~~~~~~~~~l~~~ad--~~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~~~~-g~~~~~~~------~~~~i~~~ 330 (363)
T cd03786 265 PLGYLYFLLLLKNAD--LVLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPETVES-GTNVLVGT------DPEAILAA 330 (363)
T ss_pred CcCHHHHHHHHHcCc--EEEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchhhhe-eeEEecCC------CHHHHHHH
Confidence 55543 4565655 8999999 7888999999999998743 22 3334445 76655442 58999999
Q ss_pred HHHHHcCC
Q 043168 413 FELVMNET 420 (473)
Q Consensus 413 i~~~l~~~ 420 (473)
+.++++++
T Consensus 331 i~~ll~~~ 338 (363)
T cd03786 331 IEKLLSDE 338 (363)
T ss_pred HHHHhcCc
Confidence 99999988
No 60
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=98.93 E-value=1.7e-06 Score=84.43 Aligned_cols=91 Identities=16% Similarity=0.210 Sum_probs=65.0
Q ss_pred CCCeEEecccChH---Hhhcccccceeee----ccChhhHHHHHhcCCCEEecccccchhhhHHHHHHHHcceEEEeccc
Q 043168 328 GQGLVVQKWAPQV---EILSHKSISAFLS----HCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGM 400 (473)
Q Consensus 328 ~~~v~~~~~~p~~---~lL~~~~~~~~I~----HgG~gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~ 400 (473)
..++.+..++++. .++..++ ++|. -|..+++.||+++|+|+|+.+. ......+... +.|...+.
T Consensus 255 ~~~v~~~g~~~~~~~~~~~~~~d--i~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~~~~-~~g~~~~~-- 325 (374)
T cd03801 255 GDRVTFLGFVPDEDLPALYAAAD--VFVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVVEDG-ETGLLVPP-- 325 (374)
T ss_pred CcceEEEeccChhhHHHHHHhcC--EEEecchhccccchHHHHHHcCCcEEEeCC----CChhHHhcCC-cceEEeCC--
Confidence 6788899999754 4677766 5653 2456789999999999998765 4455555545 77777664
Q ss_pred CCccCHHHHHHHHHHHHcCChhhHHHHHHH
Q 043168 401 NCEVSKENLSAKFELVMNETEKGMDLRKKA 430 (473)
Q Consensus 401 ~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a 430 (473)
.+++++.+++.+++.|++..+.+.+++
T Consensus 326 ---~~~~~l~~~i~~~~~~~~~~~~~~~~~ 352 (374)
T cd03801 326 ---GDPEALAEAILRLLDDPELRRRLGEAA 352 (374)
T ss_pred ---CCHHHHHHHHHHHHcChHHHHHHHHHH
Confidence 468999999999999983333333333
No 61
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=98.88 E-value=2e-06 Score=86.20 Aligned_cols=99 Identities=15% Similarity=0.184 Sum_probs=67.3
Q ss_pred CCCeEEecccChHH---hhcccccceeee-ccCh-hhHHHHHhcCCCEEecccccchhhhHHHHHHHHcceEEEecccCC
Q 043168 328 GQGLVVQKWAPQVE---ILSHKSISAFLS-HCGW-NSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMNC 402 (473)
Q Consensus 328 ~~~v~~~~~~p~~~---lL~~~~~~~~I~-HgG~-gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~ 402 (473)
..++.+..++|+.+ +++.+++-++.+ +.|. .++.||+++|+|+|+.. .......+... ..|..++.
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas~----~~g~~e~i~~~-~~G~lv~~---- 350 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGSD----TAPVREVITDG-ENGLLVDF---- 350 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEcC----CCCchhhcccC-CceEEcCC----
Confidence 46888999999765 566766422222 2232 37899999999999864 34455555544 56776654
Q ss_pred ccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q 043168 403 EVSKENLSAKFELVMNETEKGMDLRKKASEVEMI 436 (473)
Q Consensus 403 ~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~~~~~ 436 (473)
.+++.++++|.++++|++..+.+.+++++....
T Consensus 351 -~d~~~la~~i~~ll~~~~~~~~l~~~ar~~~~~ 383 (396)
T cd03818 351 -FDPDALAAAVIELLDDPARRARLRRAARRTALR 383 (396)
T ss_pred -CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 479999999999999985555566666554433
No 62
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.88 E-value=2.9e-06 Score=83.25 Aligned_cols=148 Identities=15% Similarity=0.085 Sum_probs=90.8
Q ss_pred ceEEEEecCcccCCHHHHHHHHHHHHhCC-CcEEEEEcCCCCCCCccchhcccCCchhHHHhh--ccCCCCeEEecccCh
Q 043168 263 SVIYVSFGSQNTIAASQMMQLAMALEACG-KNFIWVVKPPLGFDLNSEFRANEWLPEGFEERI--KDSGQGLVVQKWAPQ 339 (473)
Q Consensus 263 ~~V~vs~GS~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~p~ 339 (473)
..+++..|+... ...+..+++++.... ..+++ +|.+. ....+.+.. .....|+.+.+|+|+
T Consensus 191 ~~~i~~~G~~~~--~K~~~~li~a~~~l~~~~l~i-~G~g~-------------~~~~~~~~~~~~~~~~~V~~~g~v~~ 254 (357)
T cd03795 191 RPFFLFVGRLVY--YKGLDVLLEAAAALPDAPLVI-VGEGP-------------LEAELEALAAALGLLDRVRFLGRLDD 254 (357)
T ss_pred CcEEEEeccccc--ccCHHHHHHHHHhccCcEEEE-EeCCh-------------hHHHHHHHHHhcCCcceEEEcCCCCH
Confidence 356677777653 234445666666655 44443 33321 112222211 112578999999997
Q ss_pred H---Hhhcccccceeee---ccChh-hHHHHHhcCCCEEecccccchhhhHHHHHH-HHcceEEEecccCCccCHHHHHH
Q 043168 340 V---EILSHKSISAFLS---HCGWN-SVLEALSHGVPIIGWPLAAEQFYNSKLLEE-VIGVCVEVARGMNCEVSKENLSA 411 (473)
Q Consensus 340 ~---~lL~~~~~~~~I~---HgG~g-s~~eal~~GvP~i~~P~~~DQ~~~a~~v~~-~lG~G~~l~~~~~~~~~~~~l~~ 411 (473)
. .++..+++.++-+ +.|.| ++.||+++|+|+|+........ .+.. . +.|...+. -+.+++.+
T Consensus 255 ~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~----~i~~~~-~~g~~~~~-----~d~~~~~~ 324 (357)
T cd03795 255 EEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGS----YVNLHG-VTGLVVPP-----GDPAALAE 324 (357)
T ss_pred HHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchh----HHhhCC-CceEEeCC-----CCHHHHHH
Confidence 5 4666667522222 23433 7899999999999975544443 3333 5 67776654 48999999
Q ss_pred HHHHHHcCChhhHHHHHHHHHHHHH
Q 043168 412 KFELVMNETEKGMDLRKKASEVEMI 436 (473)
Q Consensus 412 ai~~~l~~~~~~~~~~~~a~~~~~~ 436 (473)
+|..+++|++..+.+++++++....
T Consensus 325 ~i~~l~~~~~~~~~~~~~~~~~~~~ 349 (357)
T cd03795 325 AIRRLLEDPELRERLGEAARERAEE 349 (357)
T ss_pred HHHHHHHCHHHHHHHHHHHHHHHHH
Confidence 9999999986555666666655433
No 63
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=98.82 E-value=1.1e-05 Score=78.99 Aligned_cols=81 Identities=12% Similarity=0.137 Sum_probs=60.0
Q ss_pred CCCeEEecccChH---Hhhcccccceeee----ccChhhHHHHHhcCCCEEecccccchhhhHHHHHHHHcceEEEeccc
Q 043168 328 GQGLVVQKWAPQV---EILSHKSISAFLS----HCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGM 400 (473)
Q Consensus 328 ~~~v~~~~~~p~~---~lL~~~~~~~~I~----HgG~gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~ 400 (473)
..++.+.+++++. .++..++ ++|. -|..+++.||+++|+|+|+-+.. .....+... +.|.....
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad--~~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~----~~~~~~~~~-~~g~~~~~-- 328 (377)
T cd03798 258 EDRVTFLGAVPHEEVPAYYAAAD--VFVLPSLREGFGLVLLEAMACGLPVVATDVG----GIPEIITDG-ENGLLVPP-- 328 (377)
T ss_pred cceEEEeCCCCHHHHHHHHHhcC--eeecchhhccCChHHHHHHhcCCCEEEecCC----ChHHHhcCC-cceeEECC--
Confidence 5688999999875 4566666 4542 24567899999999999986543 344555544 66666654
Q ss_pred CCccCHHHHHHHHHHHHcCC
Q 043168 401 NCEVSKENLSAKFELVMNET 420 (473)
Q Consensus 401 ~~~~~~~~l~~ai~~~l~~~ 420 (473)
-+.+++.+++.++++++
T Consensus 329 ---~~~~~l~~~i~~~~~~~ 345 (377)
T cd03798 329 ---GDPEALAEAILRLLADP 345 (377)
T ss_pred ---CCHHHHHHHHHHHhcCc
Confidence 58999999999999998
No 64
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.82 E-value=6e-06 Score=79.60 Aligned_cols=316 Identities=16% Similarity=0.190 Sum_probs=178.6
Q ss_pred EcCCCccCHHHHHHHHHHHHhCC--CcEEEEEc-CCcchhhhhhcCCCCCCceEEeccCCCCCCCCCCCCCCCCCCCCCC
Q 043168 11 FPLMAQGHIIPFLALALHLENTN--RYTITFVN-TPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLPFHL 87 (473)
Q Consensus 11 ~~~~~~GHv~P~l~LA~~L~~~r--Gh~Vt~~~-~~~~~~~v~~~~~~~~~~~~~~ip~~~~~~~l~~~~~~~~~~~~~~ 87 (473)
+=--+.|-++-.++|.++|++ + ++.|++-+ |+...+.+..... ..+...-+|++
T Consensus 54 iHaaSVGEv~a~~pLv~~l~~-~~P~~~ilvTt~T~Tg~e~a~~~~~--~~v~h~YlP~D-------------------- 110 (419)
T COG1519 54 IHAASVGEVLAALPLVRALRE-RFPDLRILVTTMTPTGAERAAALFG--DSVIHQYLPLD-------------------- 110 (419)
T ss_pred EEecchhHHHHHHHHHHHHHH-hCCCCCEEEEecCccHHHHHHHHcC--CCeEEEecCcC--------------------
Confidence 333588999999999999999 6 88888877 6777777766443 33444444421
Q ss_pred chHHHHHHhhhhHHHHHHHhhhhhccCCCCCeEEE-eCCCcc-hHHHHHHHhCCcEEEEccccHHHHHHHHhhhhcCCCC
Q 043168 88 FPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCII-ADMFFA-WSAEIAQEYGIFNALFVGGGSFGFACFYSLWLNLPHR 165 (473)
Q Consensus 88 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pDlVI-~D~~~~-~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p~~ 165 (473)
....+.++++.+ +||++| .+.-.| .-+.-++..|+|.+.+..=
T Consensus 111 ----------~~~~v~rFl~~~-------~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaR------------------ 155 (419)
T COG1519 111 ----------LPIAVRRFLRKW-------RPKLLIIMETELWPNLINELKRRGIPLVLVNAR------------------ 155 (419)
T ss_pred ----------chHHHHHHHHhc-------CCCEEEEEeccccHHHHHHHHHcCCCEEEEeee------------------
Confidence 112446788889 999666 444344 4556788899999887210
Q ss_pred CCCCcccCCCCCCcccchhhhhhhhhccCCCChHHHHHHHHhhhcccCceEEecchhhhccc--cC--------ccccCC
Q 043168 166 DSDEFLLPDFPEASRIHVTQMTKFLRLADGSDSLSVFFQKVLPQWMNADGILFNTVEELDKI--VG--------PLLLST 235 (473)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~--vG--------p~~~~~ 235 (473)
+..+.+..+.+.. .+. ...+.+.+.++..+..+-+.- .| -+-.+.
T Consensus 156 ---------------LS~rS~~~y~k~~-------~~~---~~~~~~i~li~aQse~D~~Rf~~LGa~~v~v~GNlKfd~ 210 (419)
T COG1519 156 ---------------LSDRSFARYAKLK-------FLA---RLLFKNIDLILAQSEEDAQRFRSLGAKPVVVTGNLKFDI 210 (419)
T ss_pred ---------------echhhhHHHHHHH-------HHH---HHHHHhcceeeecCHHHHHHHHhcCCcceEEecceeecC
Confidence 1111111111100 000 111223333443333222221 11 111111
Q ss_pred CCCCCCCCCCCCCchhhhhhhccCCCCceEEEEecCcccCCHHHHHHHHHHHHhC--CCcEEEEEcCCCCCCCccchhcc
Q 043168 236 GSRAGAGKEYGISTESCKNWLDTKPCNSVIYVSFGSQNTIAASQMMQLAMALEAC--GKNFIWVVKPPLGFDLNSEFRAN 313 (473)
Q Consensus 236 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~ 313 (473)
.+.+..+.....|-..-+....+.|..+|.. ...+.+-....++.+. +..+||+-....
T Consensus 211 -------~~~~~~~~~~~~~r~~l~~~r~v~iaaSTH~-GEeei~l~~~~~l~~~~~~~llIlVPRHpE----------- 271 (419)
T COG1519 211 -------EPPPQLAAELAALRRQLGGHRPVWVAASTHE-GEEEIILDAHQALKKQFPNLLLILVPRHPE----------- 271 (419)
T ss_pred -------CCChhhHHHHHHHHHhcCCCCceEEEecCCC-chHHHHHHHHHHHHhhCCCceEEEecCChh-----------
Confidence 0001112222233222221124667777743 3455556666666663 355566544331
Q ss_pred cCCchhHHHhhc---------------cCCCCeEEecccCh-HHhhccccc----ceeeeccChhhHHHHHhcCCCEEec
Q 043168 314 EWLPEGFEERIK---------------DSGQGLVVQKWAPQ-VEILSHKSI----SAFLSHCGWNSVLEALSHGVPIIGW 373 (473)
Q Consensus 314 ~~~~~~~~~~~~---------------~~~~~v~~~~~~p~-~~lL~~~~~----~~~I~HgG~gs~~eal~~GvP~i~~ 373 (473)
..+ .+.+-.. ....++.+.+-+-- ..++.-+++ +-++-+||+| ..|++++|+|+|.-
T Consensus 272 -Rf~-~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN-~LEpa~~~~pvi~G 348 (419)
T COG1519 272 -RFK-AVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHN-PLEPAAFGTPVIFG 348 (419)
T ss_pred -hHH-HHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCC-hhhHHHcCCCEEeC
Confidence 111 1111111 01234555444322 233333444 2245688887 67999999999999
Q ss_pred ccccchhhhHHHHHHHHcceEEEecccCCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHH
Q 043168 374 PLAAEQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAKFELVMNETEKGMDLRKKASEVEMIIKN 439 (473)
Q Consensus 374 P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~~~~~~~~ 439 (473)
|+..-|.+.++++.+. |.|+.++ +.+.+.+++..+++|++.++.|.+++.++-...+.
T Consensus 349 p~~~Nf~ei~~~l~~~-ga~~~v~-------~~~~l~~~v~~l~~~~~~r~~~~~~~~~~v~~~~g 406 (419)
T COG1519 349 PYTFNFSDIAERLLQA-GAGLQVE-------DADLLAKAVELLLADEDKREAYGRAGLEFLAQNRG 406 (419)
T ss_pred CccccHHHHHHHHHhc-CCeEEEC-------CHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhH
Confidence 9999999999999999 9999886 37889999998888886777787777777666653
No 65
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.79 E-value=1.2e-05 Score=77.32 Aligned_cols=290 Identities=19% Similarity=0.196 Sum_probs=154.2
Q ss_pred cCHHHHHHHHHHHHhCCCcEEEEEcCCc--chhhhhhcCCCCCCceEEeccCCCCCCCCCCCCCCCCCCCCCCchHHHHH
Q 043168 17 GHIIPFLALALHLENTNRYTITFVNTPS--NLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLPFHLFPNFFES 94 (473)
Q Consensus 17 GHv~P~l~LA~~L~~~rGh~Vt~~~~~~--~~~~v~~~~~~~~~~~~~~ip~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 94 (473)
-|+.=+-.+.++|.+ +||+|.+.+-+. ..+++.. .++.+..+... + . .....+...
T Consensus 11 ~hvhfFk~~I~eL~~-~GheV~it~R~~~~~~~LL~~-----yg~~y~~iG~~----g--~----------~~~~Kl~~~ 68 (335)
T PF04007_consen 11 AHVHFFKNIIRELEK-RGHEVLITARDKDETEELLDL-----YGIDYIVIGKH----G--D----------SLYGKLLES 68 (335)
T ss_pred hHHHHHHHHHHHHHh-CCCEEEEEEeccchHHHHHHH-----cCCCeEEEcCC----C--C----------CHHHHHHHH
Confidence 399999999999999 999999988433 3445555 45566655411 1 1 011333333
Q ss_pred HhhhhHHHHHHHhhhhhccCCCCCeEEEeCCCcchHHHHHHHhCCcEEEEccccHHHHHHHHhhhhcCCCCCCCCcccCC
Q 043168 95 TLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALFVGGGSFGFACFYSLWLNLPHRDSDEFLLPD 174 (473)
Q Consensus 95 ~~~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 174 (473)
.. ....+.+++++. +||++|+-. .+.+..+|..+|+|+|.+.-+......... ..|. ++....|.
T Consensus 69 ~~-R~~~l~~~~~~~-------~pDv~is~~-s~~a~~va~~lgiP~I~f~D~e~a~~~~~L----t~Pl--a~~i~~P~ 133 (335)
T PF04007_consen 69 IE-RQYKLLKLIKKF-------KPDVAISFG-SPEAARVAFGLGIPSIVFNDTEHAIAQNRL----TLPL--ADVIITPE 133 (335)
T ss_pred HH-HHHHHHHHHHhh-------CCCEEEecC-cHHHHHHHHHhCCCeEEEecCchhhcccee----ehhc--CCeeECCc
Confidence 32 234556777778 999999765 667888999999999998543222110000 0000 11111111
Q ss_pred CCCCcccchhhhhhhhhccCCCChHHHHHHHHhhhcccCceEE-ecchhhhccccCccccCCCCCCCCCCCCCCCchhhh
Q 043168 175 FPEASRIHVTQMTKFLRLADGSDSLSVFFQKVLPQWMNADGIL-FNTVEELDKIVGPLLLSTGSRAGAGKEYGISTESCK 253 (473)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~l~~~vGp~~~~~~~~~~~~~~~~~~~~~l~ 253 (473)
. ++. ..+.+. -.. ..+. .+...++.+- -|+.+ ++++.
T Consensus 134 ~----------~~~------------~~~~~~---G~~-~~i~~y~G~~E~ayl-~~F~P---------------d~~vl 171 (335)
T PF04007_consen 134 A----------IPK------------EFLKRF---GAK-NQIRTYNGYKELAYL-HPFKP---------------DPEVL 171 (335)
T ss_pred c----------cCH------------HHHHhc---CCc-CCEEEECCeeeEEee-cCCCC---------------ChhHH
Confidence 0 000 000000 001 1122 3444433331 22222 22333
Q ss_pred hhhccCCCCceEEEEecCccc----CCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCccchhcccCCchhHHHhhccCCC
Q 043168 254 NWLDTKPCNSVIYVSFGSQNT----IAASQMMQLAMALEACGKNFIWVVKPPLGFDLNSEFRANEWLPEGFEERIKDSGQ 329 (473)
Q Consensus 254 ~~l~~~~~~~~V~vs~GS~~~----~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (473)
+-+.. ++++.|+|=+.+..+ .....+..+++.|++.+..++...... + .++.+ + .-
T Consensus 172 ~~lg~-~~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~vV~ipr~~------------~-~~~~~-~-----~~ 231 (335)
T PF04007_consen 172 KELGL-DDEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRNVVIIPRYE------------D-QRELF-E-----KY 231 (335)
T ss_pred HHcCC-CCCCEEEEEeccccCeeecCccchHHHHHHHHHhhCceEEEecCCc------------c-hhhHH-h-----cc
Confidence 33432 245677776666432 234567788999988877644433221 0 11111 1 11
Q ss_pred CeEE-ecccChHHhhcccccceeeeccChhhHHHHHhcCCCEEecccccchhhhHHHHHHHHcceEEEecccCCccCHHH
Q 043168 330 GLVV-QKWAPQVEILSHKSISAFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMNCEVSKEN 408 (473)
Q Consensus 330 ~v~~-~~~~p~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~ 408 (473)
++.+ ..-++...+|.+++ ++|+-|| ....||...|+|.|.+ +.++-...-+.+.+. |. +. ...+.++
T Consensus 232 ~~~i~~~~vd~~~Ll~~a~--l~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L~~~-Gl---l~----~~~~~~e 299 (335)
T PF04007_consen 232 GVIIPPEPVDGLDLLYYAD--LVIGGGG-TMAREAALLGTPAISC-FPGKLLAVDKYLIEK-GL---LY----HSTDPDE 299 (335)
T ss_pred CccccCCCCCHHHHHHhcC--EEEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHHHHHHHC-CC---eE----ecCCHHH
Confidence 2222 23455568999977 7998666 7888999999999985 223322333455556 65 22 2346777
Q ss_pred HHHHHHHHH
Q 043168 409 LSAKFELVM 417 (473)
Q Consensus 409 l~~ai~~~l 417 (473)
+.+.+...+
T Consensus 300 i~~~v~~~~ 308 (335)
T PF04007_consen 300 IVEYVRKNL 308 (335)
T ss_pred HHHHHHHhh
Confidence 777555444
No 66
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.76 E-value=2.1e-05 Score=78.51 Aligned_cols=93 Identities=12% Similarity=0.059 Sum_probs=64.5
Q ss_pred CCCeEEecccChH---Hhhcccccceeeec---cC-hhhHHHHHhcCCCEEecccccchhhhHHHHHHHHcceEEEeccc
Q 043168 328 GQGLVVQKWAPQV---EILSHKSISAFLSH---CG-WNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGM 400 (473)
Q Consensus 328 ~~~v~~~~~~p~~---~lL~~~~~~~~I~H---gG-~gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~ 400 (473)
..++.+.+++|+. .++..+++ ++.. -| -.++.||+++|+|+|+.-.. .....+... +.|.....
T Consensus 279 ~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~~----~~~e~i~~~-~~g~~~~~-- 349 (392)
T cd03805 279 EDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNSG----GPLETVVDG-ETGFLCEP-- 349 (392)
T ss_pred CceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECCC----CcHHHhccC-CceEEeCC--
Confidence 4689999999986 46777774 5432 22 24788999999999997432 233445544 56766542
Q ss_pred CCccCHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 043168 401 NCEVSKENLSAKFELVMNETEKGMDLRKKASEV 433 (473)
Q Consensus 401 ~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~~ 433 (473)
+.++++++|.+++++++..+.+++++++.
T Consensus 350 ----~~~~~a~~i~~l~~~~~~~~~~~~~a~~~ 378 (392)
T cd03805 350 ----TPEEFAEAMLKLANDPDLADRMGAAGRKR 378 (392)
T ss_pred ----CHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 78999999999999985555566666554
No 67
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.76 E-value=1.6e-05 Score=77.91 Aligned_cols=154 Identities=12% Similarity=0.045 Sum_probs=87.3
Q ss_pred CceEEEEecCcccC-CHHHHHHHHHHHHhC--CCcEEEEEcCCCCCCCccchhcccCCchhHHHhhc--cCCCCeEEecc
Q 043168 262 NSVIYVSFGSQNTI-AASQMMQLAMALEAC--GKNFIWVVKPPLGFDLNSEFRANEWLPEGFEERIK--DSGQGLVVQKW 336 (473)
Q Consensus 262 ~~~V~vs~GS~~~~-~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~ 336 (473)
+..+++..|..... ..+.+..++..+... +..+ +++|... .+ ......+.+.+. ....++.+..|
T Consensus 184 ~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l-~ivG~~~---~~------~~~~~~~~~~~~~~~~~~~v~~~g~ 253 (355)
T cd03819 184 GKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHL-LIVGDAQ---GR------RFYYAELLELIKRLGLQDRVTFVGH 253 (355)
T ss_pred CceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEE-EEEECCc---cc------chHHHHHHHHHHHcCCcceEEEcCC
Confidence 34566777776543 345555555666553 3444 3344331 00 001111111111 11457888888
Q ss_pred cCh-HHhhcccccceeee--ccC-hhhHHHHHhcCCCEEecccccchhhhHHHHHHHHcceEEEecccCCccCHHHHHHH
Q 043168 337 APQ-VEILSHKSISAFLS--HCG-WNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAK 412 (473)
Q Consensus 337 ~p~-~~lL~~~~~~~~I~--HgG-~gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~a 412 (473)
.+. ..++..+++.++-+ +-| .+++.||+++|+|+|+... ......+... +.|..++. -+.+.+.++
T Consensus 254 ~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~----~~~~e~i~~~-~~g~~~~~-----~~~~~l~~~ 323 (355)
T cd03819 254 CSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDH----GGARETVRPG-ETGLLVPP-----GDAEALAQA 323 (355)
T ss_pred cccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCC----CCcHHHHhCC-CceEEeCC-----CCHHHHHHH
Confidence 554 56788877533222 123 3589999999999998643 3344445544 57877754 489999999
Q ss_pred HHHHHc-CChhhHHHHHHHHHHHH
Q 043168 413 FELVMN-ETEKGMDLRKKASEVEM 435 (473)
Q Consensus 413 i~~~l~-~~~~~~~~~~~a~~~~~ 435 (473)
|..++. +++..+.++++|++..+
T Consensus 324 i~~~~~~~~~~~~~~~~~a~~~~~ 347 (355)
T cd03819 324 LDQILSLLPEGRAKMFAKARMCVE 347 (355)
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHH
Confidence 965554 66455556666665554
No 68
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.73 E-value=1.3e-05 Score=78.53 Aligned_cols=92 Identities=15% Similarity=0.149 Sum_probs=64.3
Q ss_pred CCCeEEecccChHH---hhcccccceeeecc----ChhhHHHHHhcCCCEEecccccchhhhHHHHHHHHcceEEEeccc
Q 043168 328 GQGLVVQKWAPQVE---ILSHKSISAFLSHC----GWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGM 400 (473)
Q Consensus 328 ~~~v~~~~~~p~~~---lL~~~~~~~~I~Hg----G~gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~ 400 (473)
..++.+.+|+++.+ ++..+++ +|.-. -.+++.||+++|+|+|+.+. ......+. . +.|.....
T Consensus 261 ~~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~~----~~~~~~~~-~-~~~~~~~~-- 330 (375)
T cd03821 261 EDRVTFTGMLYGEDKAAALADADL--FVLPSHSENFGIVVAEALACGTPVVTTDK----VPWQELIE-Y-GCGWVVDD-- 330 (375)
T ss_pred cceEEEcCCCChHHHHHHHhhCCE--EEeccccCCCCcHHHHHHhcCCCEEEcCC----CCHHHHhh-c-CceEEeCC--
Confidence 57889999999644 5677664 54322 24589999999999999753 33444444 4 77766654
Q ss_pred CCccCHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 043168 401 NCEVSKENLSAKFELVMNETEKGMDLRKKASEV 433 (473)
Q Consensus 401 ~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~~ 433 (473)
+.+++.++|.+++++++..+.+.+++++.
T Consensus 331 ----~~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 359 (375)
T cd03821 331 ----DVDALAAALRRALELPQRLKAMGENGRAL 359 (375)
T ss_pred ----ChHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 45999999999999985555566665555
No 69
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.73 E-value=6.3e-06 Score=81.35 Aligned_cols=94 Identities=16% Similarity=0.171 Sum_probs=67.0
Q ss_pred CCCeEEecccChHH---hhcccccceeeec----------cChhhHHHHHhcCCCEEecccccchhhhHHHHHHHHcceE
Q 043168 328 GQGLVVQKWAPQVE---ILSHKSISAFLSH----------CGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCV 394 (473)
Q Consensus 328 ~~~v~~~~~~p~~~---lL~~~~~~~~I~H----------gG~gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~ 394 (473)
..++.+..++|+.+ +++.++ ++|.. |-.+++.||+++|+|+|+-+.. .+...+.+. +.|.
T Consensus 244 ~~~v~~~g~~~~~~l~~~~~~ad--~~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~----~~~e~i~~~-~~g~ 316 (367)
T cd05844 244 GGRVTFLGAQPHAEVRELMRRAR--IFLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG----GIPEAVEDG-ETGL 316 (367)
T ss_pred CCeEEECCCCCHHHHHHHHHhCC--EEEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC----CchhheecC-CeeE
Confidence 56788889998754 577766 45532 2356899999999999987654 355555555 7787
Q ss_pred EEecccCCccCHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 043168 395 EVARGMNCEVSKENLSAKFELVMNETEKGMDLRKKASEV 433 (473)
Q Consensus 395 ~l~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~~ 433 (473)
..+. .+.+++.+++.++++|++..+.++.++++.
T Consensus 317 ~~~~-----~d~~~l~~~i~~l~~~~~~~~~~~~~a~~~ 350 (367)
T cd05844 317 LVPE-----GDVAALAAALGRLLADPDLRARMGAAGRRR 350 (367)
T ss_pred EECC-----CCHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 7654 478999999999999984444555555444
No 70
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.72 E-value=1.4e-05 Score=80.16 Aligned_cols=131 Identities=14% Similarity=0.116 Sum_probs=75.3
Q ss_pred CceEEEEecCcccC-CHHHHHHHHHHHHh--CCCcEEEEEcCCCCCCCccchhcccCCchhHHHhhcc--CCCCeEEecc
Q 043168 262 NSVIYVSFGSQNTI-AASQMMQLAMALEA--CGKNFIWVVKPPLGFDLNSEFRANEWLPEGFEERIKD--SGQGLVVQKW 336 (473)
Q Consensus 262 ~~~V~vs~GS~~~~-~~~~~~~~~~al~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~ 336 (473)
+..+++..|..... +.+.+...+..+.+ .+..+++ +|.+. ..+.+.+...+ ...++.+.+|
T Consensus 192 ~~~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~~~l~i-~G~g~-------------~~~~l~~~~~~~~l~~~v~~~G~ 257 (398)
T cd03796 192 DKITIVVISRLVYRKGIDLLVGIIPEICKKHPNVRFII-GGDGP-------------KRILLEEMREKYNLQDRVELLGA 257 (398)
T ss_pred CceEEEEEeccchhcCHHHHHHHHHHHHhhCCCEEEEE-EeCCc-------------hHHHHHHHHHHhCCCCeEEEeCC
Confidence 34677777877532 23444444444433 3444443 44331 12223322221 1356888899
Q ss_pred cChHH---hhcccccceeee---ccChh-hHHHHHhcCCCEEecccccchhhhHHHHHHHHcceEEEecccCCccCHHHH
Q 043168 337 APQVE---ILSHKSISAFLS---HCGWN-SVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMNCEVSKENL 409 (473)
Q Consensus 337 ~p~~~---lL~~~~~~~~I~---HgG~g-s~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l 409 (473)
+|+.+ +++.++ ++|. +-|.| ++.||+++|+|+|+.+..+ ....+. . |.+.. .. .+.+++
T Consensus 258 ~~~~~~~~~l~~ad--~~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i~-~-~~~~~-~~-----~~~~~l 323 (398)
T cd03796 258 VPHERVRDVLVQGH--IFLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVLP-P-DMILL-AE-----PDVESI 323 (398)
T ss_pred CCHHHHHHHHHhCC--EEEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhhee-C-Cceee-cC-----CCHHHH
Confidence 98644 666666 4553 22444 9999999999999976542 223333 3 43322 22 278999
Q ss_pred HHHHHHHHcCC
Q 043168 410 SAKFELVMNET 420 (473)
Q Consensus 410 ~~ai~~~l~~~ 420 (473)
.+++.+++++.
T Consensus 324 ~~~l~~~l~~~ 334 (398)
T cd03796 324 VRKLEEAISIL 334 (398)
T ss_pred HHHHHHHHhCh
Confidence 99999999875
No 71
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.72 E-value=6.8e-06 Score=79.71 Aligned_cols=81 Identities=15% Similarity=0.131 Sum_probs=55.6
Q ss_pred CCCeEEecccCh-HHhhcccccceeeec----cChhhHHHHHhcCCCEEecccccchhhhHHHHHHHHcceEEEecccCC
Q 043168 328 GQGLVVQKWAPQ-VEILSHKSISAFLSH----CGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMNC 402 (473)
Q Consensus 328 ~~~v~~~~~~p~-~~lL~~~~~~~~I~H----gG~gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~ 402 (473)
..++....+.+. ..++..++ ++|.- |.-+++.||+++|+|+|+.... .....+.+. +.|...+.
T Consensus 245 ~~~v~~~g~~~~~~~~~~~~d--~~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i~~~-~~g~~~~~---- 313 (353)
T cd03811 245 ADRVHFLGFQSNPYPYLKAAD--LFVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREILEDG-ENGLLVPV---- 313 (353)
T ss_pred CccEEEecccCCHHHHHHhCC--EEEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHhcCC-CceEEECC----
Confidence 467888888775 56788877 45532 3356799999999999986433 555666655 77877764
Q ss_pred ccCHHHH---HHHHHHHHcCC
Q 043168 403 EVSKENL---SAKFELVMNET 420 (473)
Q Consensus 403 ~~~~~~l---~~ai~~~l~~~ 420 (473)
-+.+.+ .+++..++.++
T Consensus 314 -~~~~~~~~~~~~i~~~~~~~ 333 (353)
T cd03811 314 -GDEAALAAAALALLDLLLDP 333 (353)
T ss_pred -CCHHHHHHHHHHHHhccCCh
Confidence 466666 56666666666
No 72
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.70 E-value=3.3e-05 Score=83.69 Aligned_cols=98 Identities=11% Similarity=0.144 Sum_probs=66.2
Q ss_pred CCCeEEecccChHH---hhcccc--cceeeec---cCh-hhHHHHHhcCCCEEecccccchhhhHHHHHHHHcceEEEec
Q 043168 328 GQGLVVQKWAPQVE---ILSHKS--ISAFLSH---CGW-NSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVAR 398 (473)
Q Consensus 328 ~~~v~~~~~~p~~~---lL~~~~--~~~~I~H---gG~-gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~ 398 (473)
..+|.+..++++.+ +++.++ .++||.- =|. .++.||+++|+|+|+....+ ....+... ..|+.++.
T Consensus 547 ~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~EII~~g-~nGlLVdP 621 (1050)
T TIGR02468 547 YGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVDIHRVL-DNGLLVDP 621 (1050)
T ss_pred CCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHHHhccC-CcEEEECC
Confidence 35677778887755 444431 2356654 243 48889999999999985432 33334333 46777665
Q ss_pred ccCCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHH
Q 043168 399 GMNCEVSKENLSAKFELVMNETEKGMDLRKKASEVEM 435 (473)
Q Consensus 399 ~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~~~~ 435 (473)
-+++.++++|.++++|++.++.+.+++.+...
T Consensus 622 -----~D~eaLA~AL~~LL~Dpelr~~m~~~gr~~v~ 653 (1050)
T TIGR02468 622 -----HDQQAIADALLKLVADKQLWAECRQNGLKNIH 653 (1050)
T ss_pred -----CCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 58899999999999998666667777666543
No 73
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.68 E-value=2.6e-05 Score=76.84 Aligned_cols=130 Identities=23% Similarity=0.237 Sum_probs=77.5
Q ss_pred CceEEEEecCcc--c-CCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCccchhcccCCchhHHHhhccCCCCeEEecccC
Q 043168 262 NSVIYVSFGSQN--T-IAASQMMQLAMALEACGKNFIWVVKPPLGFDLNSEFRANEWLPEGFEERIKDSGQGLVVQKWAP 338 (473)
Q Consensus 262 ~~~V~vs~GS~~--~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 338 (473)
++.|+|++=... . ...+.+..+++++...+.+++++..... ... ..+-+.+.+. ....+++.+.+-++
T Consensus 201 ~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~-------p~~-~~i~~~i~~~-~~~~~~v~l~~~l~ 271 (365)
T TIGR03568 201 KPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNAD-------AGS-RIINEAIEEY-VNEHPNFRLFKSLG 271 (365)
T ss_pred CCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCC-------CCc-hHHHHHHHHH-hcCCCCEEEECCCC
Confidence 458888875543 2 3356788999999887656655543220 000 0011111111 11035788777655
Q ss_pred h---HHhhcccccceeeeccChhhHHHHHhcCCCEEecccccchhhhHHHHHHHHcceEE-EecccCCccCHHHHHHHHH
Q 043168 339 Q---VEILSHKSISAFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVE-VARGMNCEVSKENLSAKFE 414 (473)
Q Consensus 339 ~---~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~-l~~~~~~~~~~~~l~~ai~ 414 (473)
+ ..++.+++ ++|+.++.|. .||.+.|+|+|.+- +-+ .-+ +. |..+. +. .++++|.+++.
T Consensus 272 ~~~~l~Ll~~a~--~vitdSSggi-~EA~~lg~Pvv~l~---~R~---e~~-~~-g~nvl~vg------~~~~~I~~a~~ 334 (365)
T TIGR03568 272 QERYLSLLKNAD--AVIGNSSSGI-IEAPSFGVPTINIG---TRQ---KGR-LR-ADSVIDVD------PDKEEIVKAIE 334 (365)
T ss_pred hHHHHHHHHhCC--EEEEcChhHH-HhhhhcCCCEEeec---CCc---hhh-hh-cCeEEEeC------CCHHHHHHHHH
Confidence 4 55777866 7999886666 99999999999873 211 111 23 43333 33 47899999999
Q ss_pred HHH
Q 043168 415 LVM 417 (473)
Q Consensus 415 ~~l 417 (473)
+++
T Consensus 335 ~~~ 337 (365)
T TIGR03568 335 KLL 337 (365)
T ss_pred HHh
Confidence 854
No 74
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=98.67 E-value=2e-05 Score=77.49 Aligned_cols=94 Identities=16% Similarity=0.172 Sum_probs=63.2
Q ss_pred CCCeEEecccC-hH---Hhhcccccceeeecc----ChhhHHHHHhcCCCEEecccccchhhhHHHHHHHHcceEEEecc
Q 043168 328 GQGLVVQKWAP-QV---EILSHKSISAFLSHC----GWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARG 399 (473)
Q Consensus 328 ~~~v~~~~~~p-~~---~lL~~~~~~~~I~Hg----G~gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~ 399 (473)
..++....|++ +. .+++.++ ++|... ..+++.||+++|+|+|+.... .....+... +.|..++.
T Consensus 243 ~~~v~~~g~~~~~~~~~~~~~~ad--~~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~----~~~e~~~~~-~~g~~~~~- 314 (365)
T cd03825 243 PFPVHYLGSLNDDESLALIYSAAD--VFVVPSLQENFPNTAIEALACGTPVVAFDVG----GIPDIVDHG-VTGYLAKP- 314 (365)
T ss_pred CCceEecCCcCCHHHHHHHHHhCC--EEEeccccccccHHHHHHHhcCCCEEEecCC----CChhheeCC-CceEEeCC-
Confidence 55788889998 43 4677766 576643 347899999999999986532 233334433 46766554
Q ss_pred cCCccCHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 043168 400 MNCEVSKENLSAKFELVMNETEKGMDLRKKASEV 433 (473)
Q Consensus 400 ~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~~ 433 (473)
.+.+++.+++.++++|++..+.+.+++++.
T Consensus 315 ----~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 344 (365)
T cd03825 315 ----GDPEDLAEGIEWLLADPDEREELGEAAREL 344 (365)
T ss_pred ----CCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 478999999999999884333444444443
No 75
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.65 E-value=2.3e-05 Score=76.83 Aligned_cols=94 Identities=17% Similarity=0.207 Sum_probs=64.5
Q ss_pred CCCeEEecccChHH---hhcccccceeeec----------cChhhHHHHHhcCCCEEecccccchhhhHHHHHHHHcceE
Q 043168 328 GQGLVVQKWAPQVE---ILSHKSISAFLSH----------CGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCV 394 (473)
Q Consensus 328 ~~~v~~~~~~p~~~---lL~~~~~~~~I~H----------gG~gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~ 394 (473)
..++.+..++|+.+ ++..++ ++|.- |.-+++.||+++|+|+|+.+... ....+... ..|.
T Consensus 235 ~~~v~~~g~~~~~~l~~~~~~ad--i~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~----~~~~i~~~-~~g~ 307 (355)
T cd03799 235 EDRVTLLGAKSQEEVRELLRAAD--LFVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSG----IPELVEDG-ETGL 307 (355)
T ss_pred CCeEEECCcCChHHHHHHHHhCC--EEEecceecCCCCccCccHHHHHHHHcCCCEEecCCCC----cchhhhCC-CceE
Confidence 57899999998644 666666 45542 33468999999999999875432 22334423 4787
Q ss_pred EEecccCCccCHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 043168 395 EVARGMNCEVSKENLSAKFELVMNETEKGMDLRKKASEV 433 (473)
Q Consensus 395 ~l~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~~ 433 (473)
.... -+.+++.++|..+++|++....+++++++.
T Consensus 308 ~~~~-----~~~~~l~~~i~~~~~~~~~~~~~~~~a~~~ 341 (355)
T cd03799 308 LVPP-----GDPEALADAIERLLDDPELRREMGEAGRAR 341 (355)
T ss_pred EeCC-----CCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 7654 389999999999999984444455555443
No 76
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.62 E-value=7e-05 Score=73.05 Aligned_cols=90 Identities=18% Similarity=0.206 Sum_probs=59.0
Q ss_pred CCCeEEecccCh-HHhhcccccceeeeccC----hhhHHHHHhcCCCEEecccccchhhhHHHHHHHHcceEEEecccCC
Q 043168 328 GQGLVVQKWAPQ-VEILSHKSISAFLSHCG----WNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMNC 402 (473)
Q Consensus 328 ~~~v~~~~~~p~-~~lL~~~~~~~~I~HgG----~gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~ 402 (473)
..++.......+ ..+++.++ ++|..+. .+++.||+++|+|+|+.. ...+...+.+ .|..+..
T Consensus 250 ~~~v~~~g~~~~~~~~~~~ad--i~v~ps~~e~~~~~~~Ea~a~g~PvI~~~----~~~~~e~~~~---~g~~~~~---- 316 (365)
T cd03807 250 EDKVILLGERSDVPALLNALD--VFVLSSLSEGFPNVLLEAMACGLPVVATD----VGDNAELVGD---TGFLVPP---- 316 (365)
T ss_pred CceEEEccccccHHHHHHhCC--EEEeCCccccCCcHHHHHHhcCCCEEEcC----CCChHHHhhc---CCEEeCC----
Confidence 345666554443 56788866 5775544 379999999999999854 3344444443 4555543
Q ss_pred ccCHHHHHHHHHHHHcCChhhHHHHHHHH
Q 043168 403 EVSKENLSAKFELVMNETEKGMDLRKKAS 431 (473)
Q Consensus 403 ~~~~~~l~~ai~~~l~~~~~~~~~~~~a~ 431 (473)
-+.+++.+++..++++++..+.+.++++
T Consensus 317 -~~~~~l~~~i~~l~~~~~~~~~~~~~~~ 344 (365)
T cd03807 317 -GDPEALAEAIEALLADPALRQALGEAAR 344 (365)
T ss_pred -CCHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 3689999999999998733333444433
No 77
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.58 E-value=1.1e-05 Score=80.89 Aligned_cols=93 Identities=22% Similarity=0.255 Sum_probs=64.6
Q ss_pred CCCeEEecccCh-HHhhcccccceee--ec--cChh-hHHHHHhcCCCEEecccccchhhhHHHHHHHHcceEEEecccC
Q 043168 328 GQGLVVQKWAPQ-VEILSHKSISAFL--SH--CGWN-SVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMN 401 (473)
Q Consensus 328 ~~~v~~~~~~p~-~~lL~~~~~~~~I--~H--gG~g-s~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~ 401 (473)
..++.+.+++++ ..+++.+++ +| ++ .|.+ .+.||+++|+|+|+.+...+... +.. |.|+.+.
T Consensus 279 ~~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i~-----~~~-~~g~lv~---- 346 (397)
T TIGR03087 279 LPGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGID-----ALP-GAELLVA---- 346 (397)
T ss_pred CCCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCccccccc-----ccC-CcceEeC----
Confidence 567888899986 557878774 54 22 3543 69999999999999875433211 123 5666554
Q ss_pred CccCHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 043168 402 CEVSKENLSAKFELVMNETEKGMDLRKKASEVE 434 (473)
Q Consensus 402 ~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~~~ 434 (473)
-++++++++|.++++|++..+.+.+++++..
T Consensus 347 --~~~~~la~ai~~ll~~~~~~~~~~~~ar~~v 377 (397)
T TIGR03087 347 --ADPADFAAAILALLANPAEREELGQAARRRV 377 (397)
T ss_pred --CCHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 3789999999999999854555666665543
No 78
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.58 E-value=0.0001 Score=74.76 Aligned_cols=95 Identities=14% Similarity=0.106 Sum_probs=64.2
Q ss_pred CCCeEEecccChHHh---hccc--ccceeeecc---C-hhhHHHHHhcCCCEEecccccchhhhHHHHHHHHcceEEEec
Q 043168 328 GQGLVVQKWAPQVEI---LSHK--SISAFLSHC---G-WNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVAR 398 (473)
Q Consensus 328 ~~~v~~~~~~p~~~l---L~~~--~~~~~I~Hg---G-~gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~ 398 (473)
..++.+..++++.++ ++.+ ++++||... | -.+++||+++|+|+|+... ......+... ..|+.++.
T Consensus 316 ~~~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~----gg~~eiv~~~-~~G~lv~~ 390 (439)
T TIGR02472 316 YGKVAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDD----GGPRDIIANC-RNGLLVDV 390 (439)
T ss_pred CceEEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCC----CCcHHHhcCC-CcEEEeCC
Confidence 356777777776554 5544 224677643 3 3489999999999998754 3344445433 46777654
Q ss_pred ccCCccCHHHHHHHHHHHHcCChhhHHHHHHHHH
Q 043168 399 GMNCEVSKENLSAKFELVMNETEKGMDLRKKASE 432 (473)
Q Consensus 399 ~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~ 432 (473)
-+++.++++|.++++|++..+.+.+++++
T Consensus 391 -----~d~~~la~~i~~ll~~~~~~~~~~~~a~~ 419 (439)
T TIGR02472 391 -----LDLEAIASALEDALSDSSQWQLWSRNGIE 419 (439)
T ss_pred -----CCHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 47899999999999998444455555544
No 79
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.57 E-value=3.7e-05 Score=75.44 Aligned_cols=79 Identities=11% Similarity=0.124 Sum_probs=53.8
Q ss_pred CCCeEEecccCh-HHhhcccccceeeecc----ChhhHHHHHhcCCCEEecccccchhhhHHHHHHHHcceEEEecccCC
Q 043168 328 GQGLVVQKWAPQ-VEILSHKSISAFLSHC----GWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMNC 402 (473)
Q Consensus 328 ~~~v~~~~~~p~-~~lL~~~~~~~~I~Hg----G~gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~ 402 (473)
..++.+..+..+ ..++..+++ +|.-. ..+++.||+++|+|+|+. |...+...+.+ .|.....
T Consensus 244 ~~~v~~~g~~~~~~~~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i~~---~g~~~~~---- 310 (360)
T cd04951 244 SNRVKLLGLRDDIAAYYNAADL--FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVVGD---SGLIVPI---- 310 (360)
T ss_pred CCcEEEecccccHHHHHHhhce--EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEecC---CceEeCC----
Confidence 357877777655 668888774 44432 256889999999999975 44445555553 3333333
Q ss_pred ccCHHHHHHHHHHHHcCC
Q 043168 403 EVSKENLSAKFELVMNET 420 (473)
Q Consensus 403 ~~~~~~l~~ai~~~l~~~ 420 (473)
-+.+++++++.++++++
T Consensus 311 -~~~~~~~~~i~~ll~~~ 327 (360)
T cd04951 311 -SDPEALANKIDEILKMS 327 (360)
T ss_pred -CCHHHHHHHHHHHHhCC
Confidence 47899999999999543
No 80
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=98.57 E-value=0.00013 Score=73.13 Aligned_cols=95 Identities=8% Similarity=0.079 Sum_probs=66.8
Q ss_pred CCCeEEecccChH---Hhhcccccceeee---ccCh-hhHHHHHhcCCCEEecccccchhhhHHHHHHHHcceEEEeccc
Q 043168 328 GQGLVVQKWAPQV---EILSHKSISAFLS---HCGW-NSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGM 400 (473)
Q Consensus 328 ~~~v~~~~~~p~~---~lL~~~~~~~~I~---HgG~-gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~ 400 (473)
..++.+..++++. .+++.++ ++|. +-|. .++.||+++|+|+|+... ......+.+. ..|...+.
T Consensus 282 ~~~v~~~g~~~~~~~~~~l~~ad--~~v~ps~~E~~g~~~lEAma~G~Pvi~~~~----~~~~e~i~~~-~~g~~~~~-- 352 (405)
T TIGR03449 282 ADRVRFLPPRPPEELVHVYRAAD--VVAVPSYNESFGLVAMEAQACGTPVVAARV----GGLPVAVADG-ETGLLVDG-- 352 (405)
T ss_pred CceEEECCCCCHHHHHHHHHhCC--EEEECCCCCCcChHHHHHHHcCCCEEEecC----CCcHhhhccC-CceEECCC--
Confidence 3578998999864 4677777 4553 2233 489999999999998654 3344455544 56776654
Q ss_pred CCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 043168 401 NCEVSKENLSAKFELVMNETEKGMDLRKKASEVE 434 (473)
Q Consensus 401 ~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~~~ 434 (473)
-+.+.++++|.+++++++..+.+++++++..
T Consensus 353 ---~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~ 383 (405)
T TIGR03449 353 ---HDPADWADALARLLDDPRTRIRMGAAAVEHA 383 (405)
T ss_pred ---CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 4789999999999998855555666666544
No 81
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.56 E-value=5e-05 Score=74.96 Aligned_cols=132 Identities=14% Similarity=0.119 Sum_probs=78.4
Q ss_pred eEEEEecCcccCCHHHHHHHHHHHHhC--CCcEEEEEcCCCCCCCccchhcccCCchhHHHhhc--cCCCCeEEecccCh
Q 043168 264 VIYVSFGSQNTIAASQMMQLAMALEAC--GKNFIWVVKPPLGFDLNSEFRANEWLPEGFEERIK--DSGQGLVVQKWAPQ 339 (473)
Q Consensus 264 ~V~vs~GS~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~p~ 339 (473)
.+++..|.........+..+++++... +.++ +++|.+. .-+.+.+... ..+.++.+.+|+++
T Consensus 181 ~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l-~ivG~g~-------------~~~~l~~~~~~~~l~~~v~f~G~~~~ 246 (359)
T PRK09922 181 AVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQL-HIIGDGS-------------DFEKCKAYSRELGIEQRIIWHGWQSQ 246 (359)
T ss_pred cEEEEEEEEecccCcCHHHHHHHHHhhCCCeEE-EEEeCCc-------------cHHHHHHHHHHcCCCCeEEEecccCC
Confidence 456667766432234455666666654 3333 4455431 1122222221 11468888888754
Q ss_pred --HH---hhcccccceeeec----cChhhHHHHHhcCCCEEecc-cccchhhhHHHHHHHHcceEEEecccCCccCHHHH
Q 043168 340 --VE---ILSHKSISAFLSH----CGWNSVLEALSHGVPIIGWP-LAAEQFYNSKLLEEVIGVCVEVARGMNCEVSKENL 409 (473)
Q Consensus 340 --~~---lL~~~~~~~~I~H----gG~gs~~eal~~GvP~i~~P-~~~DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l 409 (473)
.. .+..++ ++|.. |--.++.||+++|+|+|+.. .. .....|++. ..|..++. -+.+++
T Consensus 247 ~~~~~~~~~~~~d--~~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~----g~~eiv~~~-~~G~lv~~-----~d~~~l 314 (359)
T PRK09922 247 PWEVVQQKIKNVS--ALLLTSKFEGFPMTLLEAMSYGIPCISSDCMS----GPRDIIKPG-LNGELYTP-----GNIDEF 314 (359)
T ss_pred cHHHHHHHHhcCc--EEEECCcccCcChHHHHHHHcCCCEEEeCCCC----ChHHHccCC-CceEEECC-----CCHHHH
Confidence 22 333444 55543 22568999999999999874 32 222344434 56777654 489999
Q ss_pred HHHHHHHHcCCh
Q 043168 410 SAKFELVMNETE 421 (473)
Q Consensus 410 ~~ai~~~l~~~~ 421 (473)
+++|.++++|++
T Consensus 315 a~~i~~l~~~~~ 326 (359)
T PRK09922 315 VGKLNKVISGEV 326 (359)
T ss_pred HHHHHHHHhCcc
Confidence 999999999994
No 82
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.53 E-value=7.2e-05 Score=74.19 Aligned_cols=93 Identities=13% Similarity=0.118 Sum_probs=61.8
Q ss_pred CCeEEecccCh-HHhhcccccceeee--c--cChhhHHHHHhcCCCEEecccccchhhhHHHHHHHHcceEEEecccCCc
Q 043168 329 QGLVVQKWAPQ-VEILSHKSISAFLS--H--CGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMNCE 403 (473)
Q Consensus 329 ~~v~~~~~~p~-~~lL~~~~~~~~I~--H--gG~gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~~ 403 (473)
.++.+..+..+ ..++..+++ +|. + |--.++.||+++|+|+|+.... .+...+... ..|..++.
T Consensus 255 ~~v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~----g~~e~i~~~-~~g~~~~~----- 322 (374)
T TIGR03088 255 HLVWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAVG----GNPELVQHG-VTGALVPP----- 322 (374)
T ss_pred ceEEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCCC----CcHHHhcCC-CceEEeCC-----
Confidence 34555555443 667888774 552 2 3356899999999999996643 344455534 56766654
Q ss_pred cCHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 043168 404 VSKENLSAKFELVMNETEKGMDLRKKASEV 433 (473)
Q Consensus 404 ~~~~~l~~ai~~~l~~~~~~~~~~~~a~~~ 433 (473)
-+.++++++|.++++|++..+.+.+++++.
T Consensus 323 ~d~~~la~~i~~l~~~~~~~~~~~~~a~~~ 352 (374)
T TIGR03088 323 GDAVALARALQPYVSDPAARRAHGAAGRAR 352 (374)
T ss_pred CCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 478999999999999884444455555543
No 83
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.52 E-value=4.6e-05 Score=74.76 Aligned_cols=96 Identities=17% Similarity=0.250 Sum_probs=64.3
Q ss_pred CCCeEEec-ccChH---Hhhcccccceeeec------cChhhHHHHHhcCCCEEecccccchhhhHHHHHHHHcceEEEe
Q 043168 328 GQGLVVQK-WAPQV---EILSHKSISAFLSH------CGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVA 397 (473)
Q Consensus 328 ~~~v~~~~-~~p~~---~lL~~~~~~~~I~H------gG~gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~ 397 (473)
..++.... |+|+. .+++.++ ++|.- |-.+++.||+++|+|+|+.+... ...+... +.|....
T Consensus 246 ~~~v~~~~~~~~~~~~~~~~~~ad--~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~~-~~g~~~~ 317 (366)
T cd03822 246 ADRVIFINRYLPDEELPELFSAAD--VVVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLDG-GTGLLVP 317 (366)
T ss_pred CCcEEEecCcCCHHHHHHHHhhcC--EEEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeeeC-CCcEEEc
Confidence 45777664 48864 5676766 45522 33458899999999999977544 2334445 6777665
Q ss_pred cccCCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q 043168 398 RGMNCEVSKENLSAKFELVMNETEKGMDLRKKASEVEMI 436 (473)
Q Consensus 398 ~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~~~~~ 436 (473)
. -+.+++++++.++++|++..+.+++++++..+.
T Consensus 318 ~-----~d~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 351 (366)
T cd03822 318 P-----GDPAALAEAIRRLLADPELAQALRARAREYARA 351 (366)
T ss_pred C-----CCHHHHHHHHHHHHcChHHHHHHHHHHHHHHhh
Confidence 4 368999999999999974444555555554433
No 84
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.46 E-value=1.2e-06 Score=71.29 Aligned_cols=118 Identities=20% Similarity=0.235 Sum_probs=79.7
Q ss_pred eEEEEecCcccCC---HHHHHHHHHHHHhCCC-cEEEEEcCCCCCCCccchhcccCCchhHHHhhccCCCCeEEecccCh
Q 043168 264 VIYVSFGSQNTIA---ASQMMQLAMALEACGK-NFIWVVKPPLGFDLNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQ 339 (473)
Q Consensus 264 ~V~vs~GS~~~~~---~~~~~~~~~al~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 339 (473)
.||||-||..... .-.-.+..+.|.+.|. +.|+.+|.+. -..++.......+..-.+...+|-|.
T Consensus 5 ~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~-----------~~~~d~~~~~~k~~gl~id~y~f~ps 73 (170)
T KOG3349|consen 5 TVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQ-----------PFFGDPIDLIRKNGGLTIDGYDFSPS 73 (170)
T ss_pred EEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCc-----------cCCCCHHHhhcccCCeEEEEEecCcc
Confidence 7999999997321 1112345566666664 5566677652 12333333222222445556677887
Q ss_pred -HHhhcccccceeeeccChhhHHHHHhcCCCEEeccc----ccchhhhHHHHHHHHcceEE
Q 043168 340 -VEILSHKSISAFLSHCGWNSVLEALSHGVPIIGWPL----AAEQFYNSKLLEEVIGVCVE 395 (473)
Q Consensus 340 -~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~i~~P~----~~DQ~~~a~~v~~~lG~G~~ 395 (473)
.+..+.++ ++|.|+|+||++|.|..|+|.|+++- ...|-..|..+++. |-=..
T Consensus 74 l~e~I~~Ad--lVIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~e-gyL~~ 131 (170)
T KOG3349|consen 74 LTEDIRSAD--LVISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAEE-GYLYY 131 (170)
T ss_pred HHHHHhhcc--EEEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHhc-CcEEE
Confidence 66676666 89999999999999999999999984 35799999999976 64433
No 85
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.46 E-value=0.00014 Score=71.47 Aligned_cols=132 Identities=15% Similarity=0.079 Sum_probs=77.9
Q ss_pred CceEEEEecCcccC-CHHHHHHHHHHHHhC--CCcEEEEEcCCCCCCCccchhcccCCchhHHHhhc--cCCCCeEEecc
Q 043168 262 NSVIYVSFGSQNTI-AASQMMQLAMALEAC--GKNFIWVVKPPLGFDLNSEFRANEWLPEGFEERIK--DSGQGLVVQKW 336 (473)
Q Consensus 262 ~~~V~vs~GS~~~~-~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~ 336 (473)
+..+.+..|+.... ..+.+-..+..+.+. +.++++ +|.+. ....+..... ....++....+
T Consensus 191 ~~~~i~~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~i-vG~g~-------------~~~~~~~~~~~~~~~~~v~~~g~ 256 (358)
T cd03812 191 DKFVIGHVGRFSEQKNHEFLIEIFAELLKKNPNAKLLL-VGDGE-------------LEEEIKKKVKELGLEDKVIFLGV 256 (358)
T ss_pred CCEEEEEEeccccccChHHHHHHHHHHHHhCCCeEEEE-EeCCc-------------hHHHHHHHHHhcCCCCcEEEecc
Confidence 34566777777532 234444455555442 344433 44331 1122222221 11467777777
Q ss_pred cCh-HHhhcccccceeeec----cChhhHHHHHhcCCCEEecccccchhhhHHHHHHHHcceEEEecccCCccCHHHHHH
Q 043168 337 APQ-VEILSHKSISAFLSH----CGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSA 411 (473)
Q Consensus 337 ~p~-~~lL~~~~~~~~I~H----gG~gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ 411 (473)
..+ ..++..++ ++|+- |-..++.||+++|+|+|+....+ ....+. . +.+..... -+++++++
T Consensus 257 ~~~~~~~~~~ad--i~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i~-~-~~~~~~~~-----~~~~~~a~ 323 (358)
T cd03812 257 RNDVPELLQAMD--VFLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDLT-D-LVKFLSLD-----ESPEIWAE 323 (358)
T ss_pred cCCHHHHHHhcC--EEEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhhc-c-CccEEeCC-----CCHHHHHH
Confidence 544 66888877 45543 34568999999999999865433 233333 3 55555443 35899999
Q ss_pred HHHHHHcCC
Q 043168 412 KFELVMNET 420 (473)
Q Consensus 412 ai~~~l~~~ 420 (473)
+|.++++|+
T Consensus 324 ~i~~l~~~~ 332 (358)
T cd03812 324 EILKLKSED 332 (358)
T ss_pred HHHHHHhCc
Confidence 999999999
No 86
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.43 E-value=0.00013 Score=70.91 Aligned_cols=127 Identities=17% Similarity=0.162 Sum_probs=74.7
Q ss_pred EEEEecCcccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCccchhcccCCchhHHHhhcc---CCCCeEEecccChHH
Q 043168 265 IYVSFGSQNTIAASQMMQLAMALEACGKNFIWVVKPPLGFDLNSEFRANEWLPEGFEERIKD---SGQGLVVQKWAPQVE 341 (473)
Q Consensus 265 V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~p~~~ 341 (473)
+.+..|.... ......++++++..+.++++ +|... ....+...... ...++....++++.+
T Consensus 173 ~i~~~Gr~~~--~Kg~~~li~~~~~~~~~l~i-~G~~~-------------~~~~~~~~~~~~~~~~~~v~~~G~~~~~~ 236 (335)
T cd03802 173 YLLFLGRISP--EKGPHLAIRAARRAGIPLKL-AGPVS-------------DPDYFYREIAPELLDGPDIEYLGEVGGAE 236 (335)
T ss_pred EEEEEEeecc--ccCHHHHHHHHHhcCCeEEE-EeCCC-------------CHHHHHHHHHHhcccCCcEEEeCCCCHHH
Confidence 4445566642 23344566777777777655 44431 11111111110 147899999999854
Q ss_pred ---hhcccccceeee--ccCh-hhHHHHHhcCCCEEecccccchhhhHHHHHHHHc-ceEEEecccCCccCHHHHHHHHH
Q 043168 342 ---ILSHKSISAFLS--HCGW-NSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIG-VCVEVARGMNCEVSKENLSAKFE 414 (473)
Q Consensus 342 ---lL~~~~~~~~I~--HgG~-gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG-~G~~l~~~~~~~~~~~~l~~ai~ 414 (473)
+++.+++-++-+ +-|. .++.||+++|+|+|+.... .....+. . | .|...+ . .+++.+++.
T Consensus 237 ~~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~----~~~e~i~-~-~~~g~l~~----~---~~~l~~~l~ 303 (335)
T cd03802 237 KAELLGNARALLFPILWEEPFGLVMIEAMACGTPVIAFRRG----AVPEVVE-D-GVTGFLVD----S---VEELAAAVA 303 (335)
T ss_pred HHHHHHhCcEEEeCCcccCCcchHHHHHHhcCCCEEEeCCC----Cchhhee-C-CCcEEEeC----C---HHHHHHHHH
Confidence 577777522222 2343 4799999999999987543 3333343 3 4 565543 2 899999999
Q ss_pred HHHcCC
Q 043168 415 LVMNET 420 (473)
Q Consensus 415 ~~l~~~ 420 (473)
.++...
T Consensus 304 ~l~~~~ 309 (335)
T cd03802 304 RADRLD 309 (335)
T ss_pred HHhccH
Confidence 887544
No 87
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.38 E-value=0.00078 Score=71.61 Aligned_cols=94 Identities=11% Similarity=0.076 Sum_probs=58.5
Q ss_pred CCeEEeccc-Ch---HHhhcc-cc-cceeeec---cCh-hhHHHHHhcCCCEEecccccchhhhHHHHHHHHcceEEEec
Q 043168 329 QGLVVQKWA-PQ---VEILSH-KS-ISAFLSH---CGW-NSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVAR 398 (473)
Q Consensus 329 ~~v~~~~~~-p~---~~lL~~-~~-~~~~I~H---gG~-gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~ 398 (473)
.+|....+. +. .+++.. ++ .++||.- =|. -++.||+++|+|+|+.-. ......|+.. .-|..++.
T Consensus 619 g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~----GG~~EiV~dg-~tGfLVdp 693 (784)
T TIGR02470 619 GQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATRF----GGPLEIIQDG-VSGFHIDP 693 (784)
T ss_pred CeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcCC----CCHHHHhcCC-CcEEEeCC
Confidence 566665653 32 344442 21 2356643 232 388999999999998643 3455556644 56888775
Q ss_pred ccCCccCHHHHHHHHHHHH----cCChhhHHHHHHHHH
Q 043168 399 GMNCEVSKENLSAKFELVM----NETEKGMDLRKKASE 432 (473)
Q Consensus 399 ~~~~~~~~~~l~~ai~~~l----~~~~~~~~~~~~a~~ 432 (473)
-+++.++++|.+++ .|++.++.+.+++.+
T Consensus 694 -----~D~eaLA~aL~~ll~kll~dp~~~~~ms~~a~~ 726 (784)
T TIGR02470 694 -----YHGEEAAEKIVDFFEKCDEDPSYWQKISQGGLQ 726 (784)
T ss_pred -----CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 47899999998876 577455555555443
No 88
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.38 E-value=0.00031 Score=70.67 Aligned_cols=74 Identities=12% Similarity=0.135 Sum_probs=50.2
Q ss_pred EEecccChHHhhcccccceeeec----cChhhHHHHHhcCCCEEecccccchhhhHHHHHHHHcceEEEecccCCccCHH
Q 043168 332 VVQKWAPQVEILSHKSISAFLSH----CGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMNCEVSKE 407 (473)
Q Consensus 332 ~~~~~~p~~~lL~~~~~~~~I~H----gG~gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~ 407 (473)
++..+.+..+++...+ +||.- +=-.++.||+++|+|+|+.-.... ..+... +.|... . +.+
T Consensus 287 vf~G~~~~~~~~~~~D--vFv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~~-----~~v~~~-~ng~~~-~------~~~ 351 (462)
T PLN02846 287 VYPGRDHADPLFHDYK--VFLNPSTTDVVCTTTAEALAMGKIVVCANHPSN-----EFFKQF-PNCRTY-D------DGK 351 (462)
T ss_pred EECCCCCHHHHHHhCC--EEEECCCcccchHHHHHHHHcCCcEEEecCCCc-----ceeecC-CceEec-C------CHH
Confidence 3456666677888866 67765 335688999999999999854331 223323 444333 2 678
Q ss_pred HHHHHHHHHHcCC
Q 043168 408 NLSAKFELVMNET 420 (473)
Q Consensus 408 ~l~~ai~~~l~~~ 420 (473)
.+.+++.++|.++
T Consensus 352 ~~a~ai~~~l~~~ 364 (462)
T PLN02846 352 GFVRATLKALAEE 364 (462)
T ss_pred HHHHHHHHHHccC
Confidence 9999999999865
No 89
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.37 E-value=8.1e-06 Score=79.63 Aligned_cols=134 Identities=15% Similarity=0.128 Sum_probs=78.7
Q ss_pred CCCceEEEEecCcccCC-H---HHHHHHHHHHHhC-CCcEEEEEcCCCCCCCccchhcccCCchhHHHhhccCCCCeEEe
Q 043168 260 PCNSVIYVSFGSQNTIA-A---SQMMQLAMALEAC-GKNFIWVVKPPLGFDLNSEFRANEWLPEGFEERIKDSGQGLVVQ 334 (473)
Q Consensus 260 ~~~~~V~vs~GS~~~~~-~---~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 334 (473)
.+++.++|++=...... + ..+..+++++.+. ++++||...+.. .....+.+.+.+. +++.+.
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p------------~~~~~i~~~l~~~-~~v~~~ 244 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNP------------RGSDIIIEKLKKY-DNVRLI 244 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-H------------HHHHHHHHHHTT--TTEEEE
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCc------------hHHHHHHHHhccc-CCEEEE
Confidence 45678999885555444 3 3455566666665 788999887441 1223344444433 588887
Q ss_pred cccCh---HHhhcccccceeeeccChhhHHHHHhcCCCEEecccccchhhhHHHHHHHHcceEEEecccCCccCHHHHHH
Q 043168 335 KWAPQ---VEILSHKSISAFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSA 411 (473)
Q Consensus 335 ~~~p~---~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ 411 (473)
+-+++ ..+|++++ ++|+..| |-.-||.++|+|+|.+ -|+-..=+-+. . |..+.+. .+.++|.+
T Consensus 245 ~~l~~~~~l~ll~~a~--~vvgdSs-GI~eEa~~lg~P~v~i---R~~geRqe~r~-~-~~nvlv~------~~~~~I~~ 310 (346)
T PF02350_consen 245 EPLGYEEYLSLLKNAD--LVVGDSS-GIQEEAPSLGKPVVNI---RDSGERQEGRE-R-GSNVLVG------TDPEAIIQ 310 (346)
T ss_dssp ----HHHHHHHHHHES--EEEESSH-HHHHHGGGGT--EEEC---SSS-S-HHHHH-T-TSEEEET------SSHHHHHH
T ss_pred CCCCHHHHHHHHhcce--EEEEcCc-cHHHHHHHhCCeEEEe---cCCCCCHHHHh-h-cceEEeC------CCHHHHHH
Confidence 77655 56777866 8999999 4444999999999999 33322222222 3 5555533 58999999
Q ss_pred HHHHHHcCC
Q 043168 412 KFELVMNET 420 (473)
Q Consensus 412 ai~~~l~~~ 420 (473)
++.+++.+.
T Consensus 311 ai~~~l~~~ 319 (346)
T PF02350_consen 311 AIEKALSDK 319 (346)
T ss_dssp HHHHHHH-H
T ss_pred HHHHHHhCh
Confidence 999999774
No 90
>PLN02275 transferase, transferring glycosyl groups
Probab=98.36 E-value=0.00088 Score=66.41 Aligned_cols=76 Identities=13% Similarity=0.224 Sum_probs=50.9
Q ss_pred CCCeEEec-ccChHH---hhcccccceeee-c-----cC-hhhHHHHHhcCCCEEecccccchhhhHHHHHHHHcceEEE
Q 043168 328 GQGLVVQK-WAPQVE---ILSHKSISAFLS-H-----CG-WNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEV 396 (473)
Q Consensus 328 ~~~v~~~~-~~p~~~---lL~~~~~~~~I~-H-----gG-~gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l 396 (473)
-+|+.+.. |+|..+ +++.+++ +|. + -| -+++.||+++|+|+|+... ......|.+. +.|...
T Consensus 285 l~~v~~~~~~~~~~~~~~~l~~aDv--~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~----gg~~eiv~~g-~~G~lv 357 (371)
T PLN02275 285 LRHVAFRTMWLEAEDYPLLLGSADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIGELVKDG-KNGLLF 357 (371)
T ss_pred CCceEEEcCCCCHHHHHHHHHhCCE--EEEeccccccccccHHHHHHHHCCCCEEEecC----CChHHHccCC-CCeEEE
Confidence 35666545 788755 4777774 552 1 12 2479999999999999743 2355556545 678765
Q ss_pred ecccCCccCHHHHHHHHHHHH
Q 043168 397 ARGMNCEVSKENLSAKFELVM 417 (473)
Q Consensus 397 ~~~~~~~~~~~~l~~ai~~~l 417 (473)
+ +++.++++|.++|
T Consensus 358 ~-------~~~~la~~i~~l~ 371 (371)
T PLN02275 358 S-------SSSELADQLLELL 371 (371)
T ss_pred C-------CHHHHHHHHHHhC
Confidence 3 4788999988764
No 91
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.35 E-value=0.00022 Score=70.13 Aligned_cols=89 Identities=19% Similarity=0.209 Sum_probs=54.5
Q ss_pred CCCeEEecccChHH---hhcccccceeeeccCh-----hhHHHHHhcCCCEEecccccchhhhHHHHHHHHcceEEEecc
Q 043168 328 GQGLVVQKWAPQVE---ILSHKSISAFLSHCGW-----NSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARG 399 (473)
Q Consensus 328 ~~~v~~~~~~p~~~---lL~~~~~~~~I~HgG~-----gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~ 399 (473)
.+++.+.+++++.+ ++..++ +++-+.-. +++.||+++|+|+|+.....- ...+. ..|.....
T Consensus 247 ~~~V~~~g~~~~~~~~~~~~~ad--~~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~~----~e~~~---~~g~~~~~- 316 (363)
T cd04955 247 DPRIIFVGPIYDQELLELLRYAA--LFYLHGHSVGGTNPSLLEAMAYGCPVLASDNPFN----REVLG---DKAIYFKV- 316 (363)
T ss_pred CCcEEEccccChHHHHHHHHhCC--EEEeCCccCCCCChHHHHHHHcCCCEEEecCCcc----ceeec---CCeeEecC-
Confidence 57899999999865 455555 45444332 478999999999998754321 11122 22323322
Q ss_pred cCCccCHHHHHHHHHHHHcCChhhHHHHHHHHH
Q 043168 400 MNCEVSKENLSAKFELVMNETEKGMDLRKKASE 432 (473)
Q Consensus 400 ~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~ 432 (473)
. + .+++++.++++|++....+.+++++
T Consensus 317 --~--~--~l~~~i~~l~~~~~~~~~~~~~~~~ 343 (363)
T cd04955 317 --G--D--DLASLLEELEADPEEVSAMAKAARE 343 (363)
T ss_pred --c--h--HHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 1 1 2999999999987443344444443
No 92
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.29 E-value=0.0028 Score=67.25 Aligned_cols=97 Identities=15% Similarity=0.186 Sum_probs=63.7
Q ss_pred CCCeEEecccCh-HHhhcccccceeee---ccC-hhhHHHHHhcCCCEEecccccchhhhHHHHHHHHcceEEEecccCC
Q 043168 328 GQGLVVQKWAPQ-VEILSHKSISAFLS---HCG-WNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMNC 402 (473)
Q Consensus 328 ~~~v~~~~~~p~-~~lL~~~~~~~~I~---HgG-~gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~ 402 (473)
..+|.+..|.++ ..+++.+++ ||. +.| -+++.||+++|+|+|+.... .....|.+. ..|+.++. .
T Consensus 573 ~~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~g----G~~EiV~dg-~~GlLv~~---~ 642 (694)
T PRK15179 573 GERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLAG----GAGEAVQEG-VTGLTLPA---D 642 (694)
T ss_pred CCcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECCC----ChHHHccCC-CCEEEeCC---C
Confidence 467888888876 557877774 543 445 45888999999999997542 344455534 46888876 5
Q ss_pred ccCHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 043168 403 EVSKENLSAKFELVMNETEKGMDLRKKASEVE 434 (473)
Q Consensus 403 ~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~~~ 434 (473)
..+++++.+++.+++.+...-+.+++++++..
T Consensus 643 d~~~~~La~aL~~ll~~l~~~~~l~~~ar~~a 674 (694)
T PRK15179 643 TVTAPDVAEALARIHDMCAADPGIARKAADWA 674 (694)
T ss_pred CCChHHHHHHHHHHHhChhccHHHHHHHHHHH
Confidence 55667777777776654311125666655443
No 93
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.28 E-value=5.7e-05 Score=73.23 Aligned_cols=150 Identities=17% Similarity=0.168 Sum_probs=87.7
Q ss_pred CceEEEEecCcccCCHHHHHHHHHHHHhCCCc-EEEEEcCCCCCCCccchhcccCCchhHHHhhccCCCCeEEecccChH
Q 043168 262 NSVIYVSFGSQNTIAASQMMQLAMALEACGKN-FIWVVKPPLGFDLNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQV 340 (473)
Q Consensus 262 ~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 340 (473)
+++|.+--||...--...+..++++....... ..+.+.... + . +.+.+.+.+ ...+.+.+ .-.
T Consensus 167 ~~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a~-----------~-~-~~i~~~~~~-~~~~~~~~--~~~ 230 (347)
T PRK14089 167 EGTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSFF-----------K-G-KDLKEIYGD-ISEFEISY--DTH 230 (347)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCCC-----------c-H-HHHHHHHhc-CCCcEEec--cHH
Confidence 35899999998753334444444444332111 223322221 0 1 222332221 12222322 335
Q ss_pred HhhcccccceeeeccChhhHHHHHhcCCCEEecccc--cchhhhHHHHH---HHHcceEEE-e----c----c-cCCccC
Q 043168 341 EILSHKSISAFLSHCGWNSVLEALSHGVPIIGWPLA--AEQFYNSKLLE---EVIGVCVEV-A----R----G-MNCEVS 405 (473)
Q Consensus 341 ~lL~~~~~~~~I~HgG~gs~~eal~~GvP~i~~P~~--~DQ~~~a~~v~---~~lG~G~~l-~----~----~-~~~~~~ 405 (473)
+++..++ ++|+-+|..|+ |+..+|+|+|+ ++. .-|..+|++++ .. |+.-.+ + + . -++..|
T Consensus 231 ~~m~~aD--lal~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~lv~~~~i-gL~Nii~~~~~~~~vvPEllQ~~~t 305 (347)
T PRK14089 231 KALLEAE--FAFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMFVKLKHI-GLANIFFDFLGKEPLHPELLQEFVT 305 (347)
T ss_pred HHHHhhh--HHHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHHHcCCee-ehHHHhcCCCcccccCchhhcccCC
Confidence 6787766 89999999999 99999999998 554 46889999998 44 544333 1 0 0 135789
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 043168 406 KENLSAKFELVMNETEKGMDLRKKASEVEMII 437 (473)
Q Consensus 406 ~~~l~~ai~~~l~~~~~~~~~~~~a~~~~~~~ 437 (473)
++.|.+++.+ +... .+++..+++.+.+
T Consensus 306 ~~~la~~i~~-~~~~----~~~~~~~~l~~~l 332 (347)
T PRK14089 306 VENLLKAYKE-MDRE----KFFKKSKELREYL 332 (347)
T ss_pred HHHHHHHHHH-HHHH----HHHHHHHHHHHHh
Confidence 9999999977 2222 4666666666655
No 94
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.27 E-value=0.00071 Score=65.00 Aligned_cols=327 Identities=17% Similarity=0.139 Sum_probs=167.3
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCC-cEEEEEcCCcch--hhhhhcCCCCCCceEEeccCCCCCCCCCCCCCCCC
Q 043168 5 KENIVMFPLMAQGHIIPFLALALHLENTNR-YTITFVNTPSNL--KKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSD 81 (473)
Q Consensus 5 ~~~Il~~~~~~~GHv~P~l~LA~~L~~~rG-h~Vt~~~~~~~~--~~v~~~~~~~~~~~~~~ip~~~~~~~l~~~~~~~~ 81 (473)
++||+++. |++=.+.-+-+|..++.+ .+ .+..++.+..+. ++..... +...++.| +. .. ...
T Consensus 3 ~~Kv~~I~-GTRPE~iKmapli~~~~~-~~~~~~~vi~TGQH~d~em~~~~l------e~~~i~~p---dy-~L---~i~ 67 (383)
T COG0381 3 MLKVLTIF-GTRPEAIKMAPLVKALEK-DPDFELIVIHTGQHRDYEMLDQVL------ELFGIRKP---DY-DL---NIM 67 (383)
T ss_pred ceEEEEEE-ecCHHHHHHhHHHHHHHh-CCCCceEEEEecccccHHHHHHHH------HHhCCCCC---Cc-ch---hcc
Confidence 45666654 888889999999999999 76 676666666555 4443311 22222211 00 00 000
Q ss_pred CCCCCCchHHHHHHhhhhHHHHHHHhhhhhccCCCCCeEEE--eCCCcc-hHHHHHHHhCCcEEEEccccHHHHHHHHhh
Q 043168 82 SLPFHLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCII--ADMFFA-WSAEIAQEYGIFNALFVGGGSFGFACFYSL 158 (473)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pDlVI--~D~~~~-~~~~~A~~~giP~v~~~~~~~~~~~~~~~~ 158 (473)
. + ...+...+......+.+++.+. +||+|+ .|.... +++++|...+||..-+-.+.- ....
T Consensus 68 ~-~---~~tl~~~t~~~i~~~~~vl~~~-------kPD~VlVhGDT~t~lA~alaa~~~~IpV~HvEAGlR-t~~~---- 131 (383)
T COG0381 68 K-P---GQTLGEITGNIIEGLSKVLEEE-------KPDLVLVHGDTNTTLAGALAAFYLKIPVGHVEAGLR-TGDL---- 131 (383)
T ss_pred c-c---CCCHHHHHHHHHHHHHHHHHhh-------CCCEEEEeCCcchHHHHHHHHHHhCCceEEEecccc-cCCC----
Confidence 0 0 1344555566667788999998 999887 455444 457889999999876632211 1000
Q ss_pred hhcCCCCCCCCcccCCCCCCcccchhhhhhhhhccC--CCChHHHHHHHHhhhcccCceEEecchhhhccccCccccCCC
Q 043168 159 WLNLPHRDSDEFLLPDFPEASRIHVTQMTKFLRLAD--GSDSLSVFFQKVLPQWMNADGILFNTVEELDKIVGPLLLSTG 236 (473)
Q Consensus 159 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~vGp~~~~~~ 236 (473)
. +|. -..+.+...+.... ......+.+ ..+..+... +++.....++-- .....
T Consensus 132 -----------~----~PE---E~NR~l~~~~S~~hfapte~ar~nL--l~EG~~~~~-IfvtGnt~iDal----~~~~~ 186 (383)
T COG0381 132 -----------Y----FPE---EINRRLTSHLSDLHFAPTEIARKNL--LREGVPEKR-IFVTGNTVIDAL----LNTRD 186 (383)
T ss_pred -----------C----CcH---HHHHHHHHHhhhhhcCChHHHHHHH--HHcCCCccc-eEEeCChHHHHH----HHHHh
Confidence 0 121 11111111111110 001111111 111112221 221111111110 00000
Q ss_pred CCCCCCCCCCCCchhhhhh-hccCCCCceEEEEecCcccCCHHHHHHHHHH----HHhC-CCcEEEEEcCCCCCCCccch
Q 043168 237 SRAGAGKEYGISTESCKNW-LDTKPCNSVIYVSFGSQNTIAASQMMQLAMA----LEAC-GKNFIWVVKPPLGFDLNSEF 310 (473)
Q Consensus 237 ~~~~~~~~~~~~~~~l~~~-l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~a----l~~~-~~~~i~~~~~~~~~~~~~~~ 310 (473)
. ...+.....- +... .+..++||+=-..+.. +-++.+.++ ++.. ++.+|..+... +.
T Consensus 187 ~--------~~~~~~~~~~~~~~~-~~~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~~~~~viyp~H~~------~~- 249 (383)
T COG0381 187 R--------VLEDSKILAKGLDDK-DKKYILVTAHRRENVG-EPLEEICEALREIAEEYPDVIVIYPVHPR------PR- 249 (383)
T ss_pred h--------hccchhhHHhhhccc-cCcEEEEEcchhhccc-ccHHHHHHHHHHHHHhCCCceEEEeCCCC------hh-
Confidence 0 0001111111 2222 2347888765444433 334444444 3333 45555444322 11
Q ss_pred hcccCCchhHH-HhhccCCCCeEEec---ccChHHhhcccccceeeeccChhhHHHHHhcCCCEEecccccchhhhHHHH
Q 043168 311 RANEWLPEGFE-ERIKDSGQGLVVQK---WAPQVEILSHKSISAFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLL 386 (473)
Q Consensus 311 ~~~~~~~~~~~-~~~~~~~~~v~~~~---~~p~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~i~~P~~~DQ~~~a~~v 386 (473)
...+. ..+. +..++.+.+ |.+...++.++. +++|-+|. -.-||-..|+|++++=...++|. ++
T Consensus 250 ------v~e~~~~~L~-~~~~v~li~pl~~~~f~~L~~~a~--~iltDSGg-iqEEAp~lg~Pvl~lR~~TERPE---~v 316 (383)
T COG0381 250 ------VRELVLKRLK-NVERVKLIDPLGYLDFHNLMKNAF--LILTDSGG-IQEEAPSLGKPVLVLRDTTERPE---GV 316 (383)
T ss_pred ------hhHHHHHHhC-CCCcEEEeCCcchHHHHHHHHhce--EEEecCCc-hhhhHHhcCCcEEeeccCCCCcc---ce
Confidence 11111 2222 134566544 567788888876 78888774 45699999999999999999998 34
Q ss_pred HHHHcceEEEecccCCccCHHHHHHHHHHHHcCChhhHHHHHH
Q 043168 387 EEVIGVCVEVARGMNCEVSKENLSAKFELVMNETEKGMDLRKK 429 (473)
Q Consensus 387 ~~~lG~G~~l~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~ 429 (473)
+ + |.-+.+.. +.+.+.+++.++++++ ...++
T Consensus 317 ~-a-gt~~lvg~------~~~~i~~~~~~ll~~~----~~~~~ 347 (383)
T COG0381 317 E-A-GTNILVGT------DEENILDAATELLEDE----EFYER 347 (383)
T ss_pred e-c-CceEEeCc------cHHHHHHHHHHHhhCh----HHHHH
Confidence 4 5 55555554 7799999999999998 55544
No 95
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.26 E-value=0.0017 Score=64.62 Aligned_cols=94 Identities=16% Similarity=0.187 Sum_probs=61.1
Q ss_pred CeEE-ecccChH---Hhhcccccceeeec----cChhhHHHHHhcCCCEEecccccchhhhHHHHHHHHcceEEEecccC
Q 043168 330 GLVV-QKWAPQV---EILSHKSISAFLSH----CGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMN 401 (473)
Q Consensus 330 ~v~~-~~~~p~~---~lL~~~~~~~~I~H----gG~gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~ 401 (473)
++.. ..++++. .++..++ ++|.- +...++.||+++|+|+|+... ......++.. +.|..++.
T Consensus 261 ~v~~~~~~~~~~~~~~~~~~aD--v~v~ps~~e~~g~~~lEA~a~G~PvI~s~~----~~~~e~i~~~-~~G~~~~~--- 330 (388)
T TIGR02149 261 GIIWINKMLPKEELVELLSNAE--VFVCPSIYEPLGIVNLEAMACGTPVVASAT----GGIPEVVVDG-ETGFLVPP--- 330 (388)
T ss_pred ceEEecCCCCHHHHHHHHHhCC--EEEeCCccCCCChHHHHHHHcCCCEEEeCC----CCHHHHhhCC-CceEEcCC---
Confidence 3443 4567754 4577766 55542 223467999999999998653 3455556645 67887765
Q ss_pred Ccc----CHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 043168 402 CEV----SKENLSAKFELVMNETEKGMDLRKKASEV 433 (473)
Q Consensus 402 ~~~----~~~~l~~ai~~~l~~~~~~~~~~~~a~~~ 433 (473)
... ..+.+.++|.++++|++..+.+.+++++.
T Consensus 331 ~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~a~~~ 366 (388)
T TIGR02149 331 DNSDADGFQAELAKAINILLADPELAKKMGIAGRKR 366 (388)
T ss_pred CCCcccchHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 222 12899999999999985555555555553
No 96
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.25 E-value=0.00023 Score=69.77 Aligned_cols=91 Identities=16% Similarity=0.241 Sum_probs=60.4
Q ss_pred CCCeEEecccChH---Hhhcccccceeeec----cChhhHHHHHhcCCCEEecccccchhhhHHHHHHHHcceEEEeccc
Q 043168 328 GQGLVVQKWAPQV---EILSHKSISAFLSH----CGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGM 400 (473)
Q Consensus 328 ~~~v~~~~~~p~~---~lL~~~~~~~~I~H----gG~gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~ 400 (473)
..++....++|+. .++..+++ +|.- |..+++.||+++|+|+|+..... ....+. ..|..+..
T Consensus 252 ~~~v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~----~~e~~~---~~~~~~~~-- 320 (365)
T cd03809 252 GDRVRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNISS----LPEVAG---DAALYFDP-- 320 (365)
T ss_pred CCeEEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCCCC----ccceec---CceeeeCC--
Confidence 6789999999875 45667664 4322 33458999999999999865421 122222 33444443
Q ss_pred CCccCHHHHHHHHHHHHcCChhhHHHHHHHHH
Q 043168 401 NCEVSKENLSAKFELVMNETEKGMDLRKKASE 432 (473)
Q Consensus 401 ~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~ 432 (473)
-+.+++.+++.+++.|++....+.+++++
T Consensus 321 ---~~~~~~~~~i~~l~~~~~~~~~~~~~~~~ 349 (365)
T cd03809 321 ---LDPEALAAAIERLLEDPALREELRERGLA 349 (365)
T ss_pred ---CCHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 37899999999999998444444544443
No 97
>PLN00142 sucrose synthase
Probab=98.15 E-value=0.0011 Score=70.72 Aligned_cols=73 Identities=11% Similarity=0.122 Sum_probs=48.3
Q ss_pred eeeec---cChh-hHHHHHhcCCCEEecccccchhhhHHHHHHHHcceEEEecccCCccCHHHHHHHHHHH----HcCCh
Q 043168 350 AFLSH---CGWN-SVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAKFELV----MNETE 421 (473)
Q Consensus 350 ~~I~H---gG~g-s~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ai~~~----l~~~~ 421 (473)
+||.- -|.| ++.||+++|+|+|+... ......|+.. ..|..++. -+++.++++|.++ +.|++
T Consensus 669 VfVlPS~~EgFGLvvLEAMA~GlPVVATdv----GG~~EIV~dG-~tG~LV~P-----~D~eaLA~aI~~lLekLl~Dp~ 738 (815)
T PLN00142 669 AFVQPALYEAFGLTVVEAMTCGLPTFATCQ----GGPAEIIVDG-VSGFHIDP-----YHGDEAANKIADFFEKCKEDPS 738 (815)
T ss_pred EEEeCCcccCCCHHHHHHHHcCCCEEEcCC----CCHHHHhcCC-CcEEEeCC-----CCHHHHHHHHHHHHHHhcCCHH
Confidence 56643 4544 89999999999988643 3455555543 46877765 4778888887654 46775
Q ss_pred hhHHHHHHHHH
Q 043168 422 KGMDLRKKASE 432 (473)
Q Consensus 422 ~~~~~~~~a~~ 432 (473)
.++.+.+++.+
T Consensus 739 lr~~mg~~Ar~ 749 (815)
T PLN00142 739 YWNKISDAGLQ 749 (815)
T ss_pred HHHHHHHHHHH
Confidence 55556655543
No 98
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.14 E-value=0.00021 Score=70.13 Aligned_cols=127 Identities=14% Similarity=0.174 Sum_probs=81.4
Q ss_pred EEEEecCcccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCccchhcccCCchhHHHhhccCCCCeEEecccChHH---
Q 043168 265 IYVSFGSQNTIAASQMMQLAMALEACGKNFIWVVKPPLGFDLNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVE--- 341 (473)
Q Consensus 265 V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~--- 341 (473)
.++..|+... ...+..++++++..+.++++ +|.+. ..+.+.+ .. ..|+.+.+++|+.+
T Consensus 197 ~il~~G~~~~--~K~~~~li~a~~~~~~~l~i-vG~g~-------------~~~~l~~-~~--~~~V~~~g~~~~~~~~~ 257 (351)
T cd03804 197 YYLSVGRLVP--YKRIDLAIEAFNKLGKRLVV-IGDGP-------------ELDRLRA-KA--GPNVTFLGRVSDEELRD 257 (351)
T ss_pred EEEEEEcCcc--ccChHHHHHHHHHCCCcEEE-EECCh-------------hHHHHHh-hc--CCCEEEecCCCHHHHHH
Confidence 4455677653 33455667777777766544 45431 1122222 11 68999999999854
Q ss_pred hhcccccceeeeccChh-hHHHHHhcCCCEEecccccchhhhHHHHHHHHcceEEEecccCCccCHHHHHHHHHHHHcCC
Q 043168 342 ILSHKSISAFLSHCGWN-SVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAKFELVMNET 420 (473)
Q Consensus 342 lL~~~~~~~~I~HgG~g-s~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ai~~~l~~~ 420 (473)
+++.+++-++-+.-|.| ++.||+++|+|+|+....+ ....+.+. +.|..++. -+.+.++++|..+++|+
T Consensus 258 ~~~~ad~~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i~~~-~~G~~~~~-----~~~~~la~~i~~l~~~~ 327 (351)
T cd03804 258 LYARARAFLFPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETVIDG-VTGILFEE-----QTVESLAAAVERFEKNE 327 (351)
T ss_pred HHHhCCEEEECCcCCCCchHHHHHHcCCCEEEeCCCC----CcceeeCC-CCEEEeCC-----CCHHHHHHHHHHHHhCc
Confidence 67777742222333443 5679999999999976433 33334444 67877764 37889999999999987
No 99
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.08 E-value=0.0031 Score=62.52 Aligned_cols=92 Identities=18% Similarity=0.206 Sum_probs=58.5
Q ss_pred CCCeEEeccc--Ch---HHhhcccccceeeecc---C-hhhHHHHHhcCCCEEecccccchhhhHHHHHHHHcceEEEec
Q 043168 328 GQGLVVQKWA--PQ---VEILSHKSISAFLSHC---G-WNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVAR 398 (473)
Q Consensus 328 ~~~v~~~~~~--p~---~~lL~~~~~~~~I~Hg---G-~gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~ 398 (473)
..++.+..+. ++ ..+++.++ +|+.-. | -.++.||+++|+|+|+.... .....+... ..|...+
T Consensus 251 ~~~v~~~~~~~~~~~~~~~~~~~ad--~~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~----~~~~~i~~~-~~g~~~~- 322 (372)
T cd03792 251 DPDIHVLTLPPVSDLEVNALQRAST--VVLQKSIREGFGLTVTEALWKGKPVIAGPVG----GIPLQIEDG-ETGFLVD- 322 (372)
T ss_pred CCCeEEEecCCCCHHHHHHHHHhCe--EEEeCCCccCCCHHHHHHHHcCCCEEEcCCC----CchhhcccC-CceEEeC-
Confidence 4567776765 43 24666666 566433 2 34899999999999987543 233344434 5566443
Q ss_pred ccCCccCHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 043168 399 GMNCEVSKENLSAKFELVMNETEKGMDLRKKASEV 433 (473)
Q Consensus 399 ~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~~ 433 (473)
+.+.++.+|.+++.+++..+.+.+++++.
T Consensus 323 ------~~~~~a~~i~~ll~~~~~~~~~~~~a~~~ 351 (372)
T cd03792 323 ------TVEEAAVRILYLLRDPELRRKMGANAREH 351 (372)
T ss_pred ------CcHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 35678889999999884444555555554
No 100
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.08 E-value=0.00064 Score=66.45 Aligned_cols=157 Identities=20% Similarity=0.240 Sum_probs=84.3
Q ss_pred CCceEEEEecCcccCCHHHHHHHHHHH---Hh--CCCcEEEEEcCCCCCCCccchhcccCCchhHHHhhccCCCCeEEec
Q 043168 261 CNSVIYVSFGSQNTIAASQMMQLAMAL---EA--CGKNFIWVVKPPLGFDLNSEFRANEWLPEGFEERIKDSGQGLVVQK 335 (473)
Q Consensus 261 ~~~~V~vs~GS~~~~~~~~~~~~~~al---~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 335 (473)
++++|.+--||...--...+..++++. .+ .+..+++.+.... ....+.........++.+..
T Consensus 183 ~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~l~fvvp~a~~~-------------~~~~i~~~~~~~~~~~~~~~ 249 (373)
T PF02684_consen 183 DKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPDLQFVVPVAPEV-------------HEELIEEILAEYPPDVSIVI 249 (373)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCHH-------------HHHHHHHHHHhhCCCCeEEE
Confidence 466899999998642223333334443 22 3566665544321 11111111111133333222
Q ss_pred c-cChHHhhcccccceeeeccChhhHHHHHhcCCCEEecc-cccchhhhHHHHHHHHcceEEEec---cc-------CCc
Q 043168 336 W-APQVEILSHKSISAFLSHCGWNSVLEALSHGVPIIGWP-LAAEQFYNSKLLEEVIGVCVEVAR---GM-------NCE 403 (473)
Q Consensus 336 ~-~p~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~i~~P-~~~DQ~~~a~~v~~~lG~G~~l~~---~~-------~~~ 403 (473)
. -.-.+++..++ +.+.-+|- .+.|+..+|+|||++= ...=....|+++.+. .. +.+.- ++ ++.
T Consensus 250 ~~~~~~~~m~~ad--~al~~SGT-aTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk~-~~-isL~Niia~~~v~PEliQ~~ 324 (373)
T PF02684_consen 250 IEGESYDAMAAAD--AALAASGT-ATLEAALLGVPMVVAYKVSPLTYFIAKRLVKV-KY-ISLPNIIAGREVVPELIQED 324 (373)
T ss_pred cCCchHHHHHhCc--chhhcCCH-HHHHHHHhCCCEEEEEcCcHHHHHHHHHhhcC-CE-eechhhhcCCCcchhhhccc
Confidence 2 23466788877 56655554 6789999999998862 222244456666533 21 11100 11 467
Q ss_pred cCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHH
Q 043168 404 VSKENLSAKFELVMNETEKGMDLRKKASEVEMIIKN 439 (473)
Q Consensus 404 ~~~~~l~~ai~~~l~~~~~~~~~~~~a~~~~~~~~~ 439 (473)
.|++.+.+++.++|.|+ ..++........+++
T Consensus 325 ~~~~~i~~~~~~ll~~~----~~~~~~~~~~~~~~~ 356 (373)
T PF02684_consen 325 ATPENIAAELLELLENP----EKRKKQKELFREIRQ 356 (373)
T ss_pred CCHHHHHHHHHHHhcCH----HHHHHHHHHHHHHHH
Confidence 89999999999999999 444444444444443
No 101
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.06 E-value=0.0021 Score=65.95 Aligned_cols=161 Identities=13% Similarity=0.134 Sum_probs=87.4
Q ss_pred CCCceEEEEecCcccCCHHHHHHHHHHHH--hC--CCcEEEEEcCCCCCCCccchhcccCCchhHHHhhccCC-CCeEEe
Q 043168 260 PCNSVIYVSFGSQNTIAASQMMQLAMALE--AC--GKNFIWVVKPPLGFDLNSEFRANEWLPEGFEERIKDSG-QGLVVQ 334 (473)
Q Consensus 260 ~~~~~V~vs~GS~~~~~~~~~~~~~~al~--~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~ 334 (473)
+++++|-+--||...--...+..++++.+ .. +..+++...... ..+.+.+...+.+ ..+.+.
T Consensus 411 ~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~~~l~fvvp~a~~~-------------~~~~i~~~~~~~~~~~~~ii 477 (608)
T PRK01021 411 SDKPIVAAFPGSRRGDILRNLTIQVQAFLASSLASTHQLLVSSANPK-------------YDHLILEVLQQEGCLHSHIV 477 (608)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhccCeEEEEecCchh-------------hHHHHHHHHhhcCCCCeEEe
Confidence 35678999999986433444455555555 32 445555433220 1112222221001 112221
Q ss_pred cccChHHhhcccccceeeeccChhhHHHHHhcCCCEEecc-cccchhhhHHHHHHH-----------HcceEEEec-ccC
Q 043168 335 KWAPQVEILSHKSISAFLSHCGWNSVLEALSHGVPIIGWP-LAAEQFYNSKLLEEV-----------IGVCVEVAR-GMN 401 (473)
Q Consensus 335 ~~~p~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~i~~P-~~~DQ~~~a~~v~~~-----------lG~G~~l~~-~~~ 401 (473)
.--...++++.++ +.+.-+|. .+.|+..+|+|||++= ...=-...++++.+. +|-.+...- .++
T Consensus 478 ~~~~~~~~m~aaD--~aLaaSGT-aTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ 554 (608)
T PRK01021 478 PSQFRYELMRECD--CALAKCGT-IVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGK 554 (608)
T ss_pred cCcchHHHHHhcC--eeeecCCH-HHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCc
Confidence 1001257788866 67777775 5679999999998851 222233456666641 111111111 112
Q ss_pred CccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 043168 402 CEVSKENLSAKFELVMNETEKGMDLRKKASEVEMII 437 (473)
Q Consensus 402 ~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~~~~~~ 437 (473)
+..|++.|++++ ++|.|++..+.+++..+++.+.+
T Consensus 555 ~~~tpe~La~~l-~lL~d~~~r~~~~~~l~~lr~~L 589 (608)
T PRK01021 555 KDFQPEEVAAAL-DILKTSQSKEKQKDACRDLYQAM 589 (608)
T ss_pred ccCCHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHh
Confidence 578999999997 88888855556666666666665
No 102
>PLN02949 transferase, transferring glycosyl groups
Probab=98.00 E-value=0.014 Score=59.32 Aligned_cols=97 Identities=13% Similarity=0.096 Sum_probs=59.5
Q ss_pred CCCeEEecccChHH---hhcccccceeee---ccChh-hHHHHHhcCCCEEecccccchhhhHHHHHHHH-c-ceEEEec
Q 043168 328 GQGLVVQKWAPQVE---ILSHKSISAFLS---HCGWN-SVLEALSHGVPIIGWPLAAEQFYNSKLLEEVI-G-VCVEVAR 398 (473)
Q Consensus 328 ~~~v~~~~~~p~~~---lL~~~~~~~~I~---HgG~g-s~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~l-G-~G~~l~~ 398 (473)
.+++.+..++|+.+ +|+.++ ++|+ +=|.| ++.||+++|+|+|+....+--. ..+...- | .|...
T Consensus 334 ~~~V~f~g~v~~~el~~ll~~a~--~~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~---eIV~~~~~g~tG~l~-- 406 (463)
T PLN02949 334 DGDVEFHKNVSYRDLVRLLGGAV--AGLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKM---DIVLDEDGQQTGFLA-- 406 (463)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCc--EEEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcc---eeeecCCCCcccccC--
Confidence 46788889998654 566766 4552 23334 7899999999999986432100 0011000 1 22221
Q ss_pred ccCCccCHHHHHHHHHHHHcC-ChhhHHHHHHHHHHHHH
Q 043168 399 GMNCEVSKENLSAKFELVMNE-TEKGMDLRKKASEVEMI 436 (473)
Q Consensus 399 ~~~~~~~~~~l~~ai~~~l~~-~~~~~~~~~~a~~~~~~ 436 (473)
-+++++++++.+++++ ++..+.+++++++..+.
T Consensus 407 -----~~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~~~ 440 (463)
T PLN02949 407 -----TTVEEYADAILEVLRMRETERLEIAAAARKRANR 440 (463)
T ss_pred -----CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 2789999999999985 43444566666655443
No 103
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=97.90 E-value=0.01 Score=60.99 Aligned_cols=137 Identities=11% Similarity=0.018 Sum_probs=72.2
Q ss_pred ceEEEEecCcccC-CHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCccchhcccCCchhHHHhhccCCCCeEEecccChH-
Q 043168 263 SVIYVSFGSQNTI-AASQMMQLAMALEACGKNFIWVVKPPLGFDLNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQV- 340 (473)
Q Consensus 263 ~~V~vs~GS~~~~-~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~- 340 (473)
..+++..|..... ..+.+...+..+.+.+.++++ +|.+. ....+.+.+...+.+.++.+....++.
T Consensus 296 ~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi-~G~g~-----------~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 363 (476)
T cd03791 296 APLFGFVGRLTEQKGIDLLLEALPELLELGGQLVI-LGSGD-----------PEYEEALRELAARYPGRVAVLIGYDEAL 363 (476)
T ss_pred CCEEEEEeeccccccHHHHHHHHHHHHHcCcEEEE-EecCC-----------HHHHHHHHHHHHhCCCcEEEEEeCCHHH
Confidence 3566667777632 234444444445444555544 44331 101122322222224566543333432
Q ss_pred --Hhhcccccceeeec---cCh-hhHHHHHhcCCCEEeccccc--chhhhHHHHHHHHcceEEEecccCCccCHHHHHHH
Q 043168 341 --EILSHKSISAFLSH---CGW-NSVLEALSHGVPIIGWPLAA--EQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAK 412 (473)
Q Consensus 341 --~lL~~~~~~~~I~H---gG~-gs~~eal~~GvP~i~~P~~~--DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~a 412 (473)
.+++.++ +++.- -|. .+.+||+++|+|+|+....+ |.-.......+. |.|...+. .+++++.++
T Consensus 364 ~~~~~~~aD--v~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~-~~G~~~~~-----~~~~~l~~~ 435 (476)
T cd03791 364 AHLIYAGAD--FFLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGE-GTGFVFEG-----YNADALLAA 435 (476)
T ss_pred HHHHHHhCC--EEECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCC-CCeEEeCC-----CCHHHHHHH
Confidence 3566666 45532 122 37789999999999865432 211111000023 57888765 478999999
Q ss_pred HHHHHcC
Q 043168 413 FELVMNE 419 (473)
Q Consensus 413 i~~~l~~ 419 (473)
+.++++.
T Consensus 436 i~~~l~~ 442 (476)
T cd03791 436 LRRALAL 442 (476)
T ss_pred HHHHHHH
Confidence 9998863
No 104
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=97.90 E-value=0.022 Score=57.44 Aligned_cols=79 Identities=18% Similarity=0.133 Sum_probs=52.9
Q ss_pred CCCeEEecccChH---Hhhcccccceeee-----ccChhhHHHHHhcCCCEEecccccchhhhHHHHH---HHHcceEEE
Q 043168 328 GQGLVVQKWAPQV---EILSHKSISAFLS-----HCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLE---EVIGVCVEV 396 (473)
Q Consensus 328 ~~~v~~~~~~p~~---~lL~~~~~~~~I~-----HgG~gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~---~~lG~G~~l 396 (473)
.++|.+..++|+. .+|+.++ ++|+ |-| -++.||+++|+|+|+.-..+.- ...+. .. ..|...
T Consensus 304 ~~~V~f~g~v~~~~l~~~l~~ad--v~v~~s~~E~Fg-i~~lEAMa~G~pvIa~~~ggp~---~~iv~~~~~g-~~G~l~ 376 (419)
T cd03806 304 EDKVEFVVNAPFEELLEELSTAS--IGLHTMWNEHFG-IGVVEYMAAGLIPLAHASGGPL---LDIVVPWDGG-PTGFLA 376 (419)
T ss_pred CCeEEEecCCCHHHHHHHHHhCe--EEEECCccCCcc-cHHHHHHHcCCcEEEEcCCCCc---hheeeccCCC-CceEEe
Confidence 4688888999875 4677766 4543 233 3789999999999986533211 11121 23 466542
Q ss_pred ecccCCccCHHHHHHHHHHHHcCC
Q 043168 397 ARGMNCEVSKENLSAKFELVMNET 420 (473)
Q Consensus 397 ~~~~~~~~~~~~l~~ai~~~l~~~ 420 (473)
. +++++++++.++++++
T Consensus 377 -~------d~~~la~ai~~ll~~~ 393 (419)
T cd03806 377 -S------TAEEYAEAIEKILSLS 393 (419)
T ss_pred -C------CHHHHHHHHHHHHhCC
Confidence 1 7899999999999976
No 105
>PLN02501 digalactosyldiacylglycerol synthase
Probab=97.84 E-value=0.0023 Score=66.34 Aligned_cols=76 Identities=16% Similarity=0.142 Sum_probs=51.5
Q ss_pred CeEEecccChH-Hhhcccccceeeec----cChhhHHHHHhcCCCEEecccccchhhhHHHHHHHHcceEEEecccCCcc
Q 043168 330 GLVVQKWAPQV-EILSHKSISAFLSH----CGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMNCEV 404 (473)
Q Consensus 330 ~v~~~~~~p~~-~lL~~~~~~~~I~H----gG~gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~~~ 404 (473)
++.+..+.++. .+++.++ +||.- |=-.+++||+++|+|+|+....+... +. . |.+..+..
T Consensus 602 ~V~FLG~~dd~~~lyasaD--VFVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V~-~-g~nGll~~------ 666 (794)
T PLN02501 602 NLNFLKGRDHADDSLHGYK--VFINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----FR-S-FPNCLTYK------ 666 (794)
T ss_pred EEEecCCCCCHHHHHHhCC--EEEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----Ee-e-cCCeEecC------
Confidence 45666777754 4888866 56543 22457889999999999986654322 22 2 33323322
Q ss_pred CHHHHHHHHHHHHcCC
Q 043168 405 SKENLSAKFELVMNET 420 (473)
Q Consensus 405 ~~~~l~~ai~~~l~~~ 420 (473)
+.+.+.++|.++|.++
T Consensus 667 D~EafAeAI~~LLsd~ 682 (794)
T PLN02501 667 TSEDFVAKVKEALANE 682 (794)
T ss_pred CHHHHHHHHHHHHhCc
Confidence 6899999999999988
No 106
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.83 E-value=0.00047 Score=68.78 Aligned_cols=152 Identities=20% Similarity=0.242 Sum_probs=83.0
Q ss_pred CCceEEEEecCcccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCccchhcccCCchhHHHhhcc---CCCCeEEeccc
Q 043168 261 CNSVIYVSFGSQNTIAASQMMQLAMALEACGKNFIWVVKPPLGFDLNSEFRANEWLPEGFEERIKD---SGQGLVVQKWA 337 (473)
Q Consensus 261 ~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~ 337 (473)
++.++|.+|.+....+++.+..-.+.|+..+.-.+|....+. .-...+...... .+..+.+.++.
T Consensus 283 ~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~------------~~~~~l~~~~~~~Gv~~~Ri~f~~~~ 350 (468)
T PF13844_consen 283 EDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPA------------SGEARLRRRFAAHGVDPDRIIFSPVA 350 (468)
T ss_dssp SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETST------------THHHHHHHHHHHTTS-GGGEEEEE--
T ss_pred CCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCH------------HHHHHHHHHHHHcCCChhhEEEcCCC
Confidence 455999999999999999999988989998888888876442 011222222221 14567777777
Q ss_pred ChHHhhcc-ccccee---eeccChhhHHHHHhcCCCEEecccccchhhhHHHHHHHHcceEEEecccCCccCHHHHHHHH
Q 043168 338 PQVEILSH-KSISAF---LSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAKF 413 (473)
Q Consensus 338 p~~~lL~~-~~~~~~---I~HgG~gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ai 413 (473)
+..+.|.. ..++++ ...+|.+|++|||+.|||+|.+|-..=.-..+..+-+.+|+.-.+.. +.++-.+..
T Consensus 351 ~~~ehl~~~~~~DI~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~lGl~ElIA~------s~~eYv~~A 424 (468)
T PF13844_consen 351 PREEHLRRYQLADICLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRALGLPELIAD------SEEEYVEIA 424 (468)
T ss_dssp -HHHHHHHGGG-SEEE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHHT-GGGB-S------SHHHHHHHH
T ss_pred CHHHHHHHhhhCCEEeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHcCCchhcCC------CHHHHHHHH
Confidence 76654432 223334 45678899999999999999999554333444444445577755443 555555555
Q ss_pred HHHHcCChhhHHHHHHH
Q 043168 414 ELVMNETEKGMDLRKKA 430 (473)
Q Consensus 414 ~~~l~~~~~~~~~~~~a 430 (473)
.++-+|++..+.+|++.
T Consensus 425 v~La~D~~~l~~lR~~L 441 (468)
T PF13844_consen 425 VRLATDPERLRALRAKL 441 (468)
T ss_dssp HHHHH-HHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHH
Confidence 56778874444444433
No 107
>PRK00654 glgA glycogen synthase; Provisional
Probab=97.81 E-value=0.02 Score=58.62 Aligned_cols=136 Identities=11% Similarity=0.053 Sum_probs=71.2
Q ss_pred ceEEEEecCcccC-CHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCccchhcccCCchhHHHhhccCCCCeE-EecccCh-
Q 043168 263 SVIYVSFGSQNTI-AASQMMQLAMALEACGKNFIWVVKPPLGFDLNSEFRANEWLPEGFEERIKDSGQGLV-VQKWAPQ- 339 (473)
Q Consensus 263 ~~V~vs~GS~~~~-~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~p~- 339 (473)
..+++..|..... ..+.+...+..+...+.+++++ |.+. ....+.+.+...+.+.++. ...|-..
T Consensus 282 ~~~i~~vGRl~~~KG~~~li~a~~~l~~~~~~lviv-G~g~-----------~~~~~~l~~l~~~~~~~v~~~~g~~~~~ 349 (466)
T PRK00654 282 APLFAMVSRLTEQKGLDLVLEALPELLEQGGQLVLL-GTGD-----------PELEEAFRALAARYPGKVGVQIGYDEAL 349 (466)
T ss_pred CcEEEEeeccccccChHHHHHHHHHHHhcCCEEEEE-ecCc-----------HHHHHHHHHHHHHCCCcEEEEEeCCHHH
Confidence 3566666777532 2333333333333346666554 5431 0011223322222244544 3455322
Q ss_pred -HHhhcccccceeeec---cChh-hHHHHHhcCCCEEeccccc--chhhhHHHHHHHHcceEEEecccCCccCHHHHHHH
Q 043168 340 -VEILSHKSISAFLSH---CGWN-SVLEALSHGVPIIGWPLAA--EQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAK 412 (473)
Q Consensus 340 -~~lL~~~~~~~~I~H---gG~g-s~~eal~~GvP~i~~P~~~--DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~a 412 (473)
..+++.++ ++|.- -|.| +.+||+++|+|.|+....+ |.-.....-... +.|...+. -+++.+.++
T Consensus 350 ~~~~~~~aD--v~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~-~~G~lv~~-----~d~~~la~~ 421 (466)
T PRK00654 350 AHRIYAGAD--MFLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGE-ATGFVFDD-----FNAEDLLRA 421 (466)
T ss_pred HHHHHhhCC--EEEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCC-CceEEeCC-----CCHHHHHHH
Confidence 24677766 45542 3444 7889999999999864321 211110000123 56777664 478999999
Q ss_pred HHHHHc
Q 043168 413 FELVMN 418 (473)
Q Consensus 413 i~~~l~ 418 (473)
+.++++
T Consensus 422 i~~~l~ 427 (466)
T PRK00654 422 LRRALE 427 (466)
T ss_pred HHHHHH
Confidence 999886
No 108
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=97.75 E-value=0.012 Score=60.51 Aligned_cols=135 Identities=12% Similarity=0.027 Sum_probs=73.2
Q ss_pred eEEEEecCcccC-CHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCccchhcccCCchhHHHhhccCCCCeEEecccChH--
Q 043168 264 VIYVSFGSQNTI-AASQMMQLAMALEACGKNFIWVVKPPLGFDLNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQV-- 340 (473)
Q Consensus 264 ~V~vs~GS~~~~-~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-- 340 (473)
.+++..|..... ..+.+.+.+..+.+.+.++++ +|.+. ....+.+.+...+.+.++.+....+..
T Consensus 292 ~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi-~G~g~-----------~~~~~~l~~~~~~~~~~v~~~~~~~~~~~ 359 (473)
T TIGR02095 292 PLFGVISRLTQQKGVDLLLAALPELLELGGQLVV-LGTGD-----------PELEEALRELAERYPGNVRVIIGYDEALA 359 (473)
T ss_pred CEEEEEecCccccChHHHHHHHHHHHHcCcEEEE-ECCCC-----------HHHHHHHHHHHHHCCCcEEEEEcCCHHHH
Confidence 566666777642 234444444444444556544 45431 001222332222225566655555553
Q ss_pred -Hhhcccccceeeec---cChh-hHHHHHhcCCCEEeccccc--chhhhHHHHHHHHcceEEEecccCCccCHHHHHHHH
Q 043168 341 -EILSHKSISAFLSH---CGWN-SVLEALSHGVPIIGWPLAA--EQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAKF 413 (473)
Q Consensus 341 -~lL~~~~~~~~I~H---gG~g-s~~eal~~GvP~i~~P~~~--DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ai 413 (473)
.+++.++ ++|.- -|.| +.+||+++|+|+|+....+ |.-.....-... +.|..... .+++.++++|
T Consensus 360 ~~~~~~aD--v~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~~-~~G~l~~~-----~d~~~la~~i 431 (473)
T TIGR02095 360 HLIYAGAD--FILMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAES-GTGFLFEE-----YDPGALLAAL 431 (473)
T ss_pred HHHHHhCC--EEEeCCCcCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCCCCC-CceEEeCC-----CCHHHHHHHH
Confidence 3666766 56543 2444 7889999999999865432 211110000112 56776654 4889999999
Q ss_pred HHHHc
Q 043168 414 ELVMN 418 (473)
Q Consensus 414 ~~~l~ 418 (473)
.+++.
T Consensus 432 ~~~l~ 436 (473)
T TIGR02095 432 SRALR 436 (473)
T ss_pred HHHHH
Confidence 99887
No 109
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=97.75 E-value=0.056 Score=53.57 Aligned_cols=79 Identities=18% Similarity=0.154 Sum_probs=52.2
Q ss_pred CCCeEEecccChHH---hhcccccceee------eccCh-hhHHHHHhcCCCEEecccccchhhhHHHHHHHHcceEEEe
Q 043168 328 GQGLVVQKWAPQVE---ILSHKSISAFL------SHCGW-NSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVA 397 (473)
Q Consensus 328 ~~~v~~~~~~p~~~---lL~~~~~~~~I------~HgG~-gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~ 397 (473)
..|+...+++|+.+ +++++++.++- +.++. +.+.|++++|+|+|+.++ ...++.. + |..+.
T Consensus 253 ~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~~~~-~-~~~~~ 323 (373)
T cd04950 253 LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVRRYE-D-EVVLI 323 (373)
T ss_pred CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHHhhc-C-cEEEe
Confidence 57999999998755 56677753221 22332 358999999999998753 2222322 3 33333
Q ss_pred cccCCccCHHHHHHHHHHHHcCC
Q 043168 398 RGMNCEVSKENLSAKFELVMNET 420 (473)
Q Consensus 398 ~~~~~~~~~~~l~~ai~~~l~~~ 420 (473)
. -+++++.++|.+++.++
T Consensus 324 ~-----~d~~~~~~ai~~~l~~~ 341 (373)
T cd04950 324 A-----DDPEEFVAAIEKALLED 341 (373)
T ss_pred C-----CCHHHHHHHHHHHHhcC
Confidence 2 27999999999987655
No 110
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.74 E-value=0.0011 Score=66.73 Aligned_cols=98 Identities=16% Similarity=0.245 Sum_probs=69.1
Q ss_pred CCCeEEecccChHH---hhcccccceeeeccC----hhhHHHHHhcCCCEEecccccchhhhHHHHHHHHcceEEEeccc
Q 043168 328 GQGLVVQKWAPQVE---ILSHKSISAFLSHCG----WNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGM 400 (473)
Q Consensus 328 ~~~v~~~~~~p~~~---lL~~~~~~~~I~HgG----~gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~ 400 (473)
..++...+|+++.+ ++..+++++||...- -++++||+++|+|+|+.. .......+... +.|..+..
T Consensus 288 ~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~----vgg~~e~i~~~-~~G~l~~~-- 360 (407)
T cd04946 288 NISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATN----VGGTPEIVDNG-GNGLLLSK-- 360 (407)
T ss_pred CceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCC----CCCcHHHhcCC-CcEEEeCC--
Confidence 35688889999764 445445557776553 457999999999999864 33455555533 47877653
Q ss_pred CCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 043168 401 NCEVSKENLSAKFELVMNETEKGMDLRKKASEVE 434 (473)
Q Consensus 401 ~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~~~ 434 (473)
..+.++++++|.++++|++..+.++++|++.-
T Consensus 361 --~~~~~~la~~I~~ll~~~~~~~~m~~~ar~~~ 392 (407)
T cd04946 361 --DPTPNELVSSLSKFIDNEEEYQTMREKAREKW 392 (407)
T ss_pred --CCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 45789999999999998855556666665554
No 111
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.73 E-value=0.00042 Score=60.33 Aligned_cols=93 Identities=23% Similarity=0.269 Sum_probs=67.2
Q ss_pred CCCeEEecccCh---HHhhcccccceeeec----cChhhHHHHHhcCCCEEecccccchhhhHHHHHHHHcceEEEeccc
Q 043168 328 GQGLVVQKWAPQ---VEILSHKSISAFLSH----CGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGM 400 (473)
Q Consensus 328 ~~~v~~~~~~p~---~~lL~~~~~~~~I~H----gG~gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~ 400 (473)
..++.+..++++ ..++..++ ++|+. +...++.||+++|+|+|+. +...+...+... +.|..++.
T Consensus 72 ~~~i~~~~~~~~~~l~~~~~~~d--i~v~~s~~e~~~~~~~Ea~~~g~pvI~~----~~~~~~e~~~~~-~~g~~~~~-- 142 (172)
T PF00534_consen 72 KENIIFLGYVPDDELDELYKSSD--IFVSPSRNEGFGLSLLEAMACGCPVIAS----DIGGNNEIINDG-VNGFLFDP-- 142 (172)
T ss_dssp GTTEEEEESHSHHHHHHHHHHTS--EEEE-BSSBSS-HHHHHHHHTT-EEEEE----SSTHHHHHSGTT-TSEEEEST--
T ss_pred cccccccccccccccccccccce--eccccccccccccccccccccccceeec----cccCCceeeccc-cceEEeCC--
Confidence 468888899883 55777766 57766 5667999999999999975 355555555545 66888875
Q ss_pred CCccCHHHHHHHHHHHHcCChhhHHHHHHHHH
Q 043168 401 NCEVSKENLSAKFELVMNETEKGMDLRKKASE 432 (473)
Q Consensus 401 ~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~ 432 (473)
.+.+++.++|.+++++++..+.+++++++
T Consensus 143 ---~~~~~l~~~i~~~l~~~~~~~~l~~~~~~ 171 (172)
T PF00534_consen 143 ---NDIEELADAIEKLLNDPELRQKLGKNARE 171 (172)
T ss_dssp ---TSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHCCHHHHHHHHHHhcC
Confidence 39999999999999998555556666554
No 112
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.72 E-value=0.021 Score=58.68 Aligned_cols=94 Identities=15% Similarity=0.208 Sum_probs=64.8
Q ss_pred CCCeEEecccChHHhhcccccceeeec----cChhhHHHHHhcCCCEEecccccchhhhHHHHHHH----Hc-ceEEEec
Q 043168 328 GQGLVVQKWAPQVEILSHKSISAFLSH----CGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEV----IG-VCVEVAR 398 (473)
Q Consensus 328 ~~~v~~~~~~p~~~lL~~~~~~~~I~H----gG~gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~----lG-~G~~l~~ 398 (473)
..+|.+.....-..+++.+++ +|.- |--+++.||+++|+|+|+- |.......+... +| .|...+.
T Consensus 353 ~~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVat----d~g~~~elv~~~~~~~~g~~G~lv~~ 426 (475)
T cd03813 353 EDNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVAT----DVGSCRELIEGADDEALGPAGEVVPP 426 (475)
T ss_pred CCeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEEC----CCCChHHHhcCCcccccCCceEEECC
Confidence 467888776666778888774 5433 3346899999999999985 344444445531 11 6766654
Q ss_pred ccCCccCHHHHHHHHHHHHcCChhhHHHHHHHHH
Q 043168 399 GMNCEVSKENLSAKFELVMNETEKGMDLRKKASE 432 (473)
Q Consensus 399 ~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~ 432 (473)
.+.+++++++.++++|++.++.+.+++++
T Consensus 427 -----~d~~~la~ai~~ll~~~~~~~~~~~~a~~ 455 (475)
T cd03813 427 -----ADPEALARAILRLLKDPELRRAMGEAGRK 455 (475)
T ss_pred -----CCHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 58899999999999998555555555554
No 113
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=97.71 E-value=0.0049 Score=60.97 Aligned_cols=101 Identities=20% Similarity=0.207 Sum_probs=70.8
Q ss_pred CCCeEEecccCh-HHhhcccccceeeec--cChhhHHHHHhcCCCEEecccccchhhhHHHHHHHHcceEEEecccCCcc
Q 043168 328 GQGLVVQKWAPQ-VEILSHKSISAFLSH--CGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMNCEV 404 (473)
Q Consensus 328 ~~~v~~~~~~p~-~~lL~~~~~~~~I~H--gG~gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~~~ 404 (473)
..++.+..+.++ ..++..+++-++.++ |...++.||+++|+|+|+..... .....+... ..|..++. -
T Consensus 260 ~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v~~~-~~G~lv~~-----~ 330 (372)
T cd04949 260 EDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEIIEDG-ENGYLVPK-----G 330 (372)
T ss_pred cceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHcccC-CCceEeCC-----C
Confidence 456777777665 568888776444444 23458999999999999864331 123344434 57777654 5
Q ss_pred CHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 043168 405 SKENLSAKFELVMNETEKGMDLRKKASEVEMII 437 (473)
Q Consensus 405 ~~~~l~~ai~~~l~~~~~~~~~~~~a~~~~~~~ 437 (473)
+.++++++|..++.|++..+.+.+++.+.++.+
T Consensus 331 d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~ 363 (372)
T cd04949 331 DIEALAEAIIELLNDPKLLQKFSEAAYENAERY 363 (372)
T ss_pred cHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHh
Confidence 899999999999999866667777777776555
No 114
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=97.67 E-value=0.025 Score=54.56 Aligned_cols=182 Identities=16% Similarity=0.179 Sum_probs=99.6
Q ss_pred hhhhhccCCCCceEEEEecCcccCCHHHHHHHHHHHHh-----CCCcEEEEEcCCCCCCCccchhcccCCchhHHHhhcc
Q 043168 252 CKNWLDTKPCNSVIYVSFGSQNTIAASQMMQLAMALEA-----CGKNFIWVVKPPLGFDLNSEFRANEWLPEGFEERIKD 326 (473)
Q Consensus 252 l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~-----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (473)
+.+-+.-..+++++.+-.||..+--...+..+.++... .+.+|++-+.+. ..+.......+
T Consensus 178 ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~~~--------------~~~~~~~~~~~ 243 (381)
T COG0763 178 AREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPLVNA--------------KYRRIIEEALK 243 (381)
T ss_pred HHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecCcH--------------HHHHHHHHHhh
Confidence 33334333346689999999865322333333333333 457777665432 11111111110
Q ss_pred CC---CCeEEecccCh--HHhhcccccceeeeccChhhHHHHHhcCCCEEecccccc--hhhhHHHHHHHHcceE-----
Q 043168 327 SG---QGLVVQKWAPQ--VEILSHKSISAFLSHCGWNSVLEALSHGVPIIGWPLAAE--QFYNSKLLEEVIGVCV----- 394 (473)
Q Consensus 327 ~~---~~v~~~~~~p~--~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~i~~P~~~D--Q~~~a~~v~~~lG~G~----- 394 (473)
.. .+..+ +++ ..++..++ +.+.-+|- -+.|+..+|+|||+. +-.+ -...+++..+.+=+++
T Consensus 244 ~~~~~~~~~~---~~~~~~~a~~~aD--~al~aSGT-~tLE~aL~g~P~Vv~-Yk~~~it~~iak~lvk~~yisLpNIi~ 316 (381)
T COG0763 244 WEVAGLSLIL---IDGEKRKAFAAAD--AALAASGT-ATLEAALAGTPMVVA-YKVKPITYFIAKRLVKLPYVSLPNILA 316 (381)
T ss_pred ccccCceEEe---cCchHHHHHHHhh--HHHHhccH-HHHHHHHhCCCEEEE-EeccHHHHHHHHHhccCCcccchHHhc
Confidence 01 11122 222 33566655 56666665 467999999999885 1111 2233444443311111
Q ss_pred --EEecc-cCCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHH
Q 043168 395 --EVARG-MNCEVSKENLSAKFELVMNETEKGMDLRKKASEVEMIIKNAVRNEEKFKGSSVKAMEQFLDAA 462 (473)
Q Consensus 395 --~l~~~-~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~ 462 (473)
.+-+. -++..+++.|.+++..++.|+...+.+.+...++...++ .+++++.+++.+++.+
T Consensus 317 ~~~ivPEliq~~~~pe~la~~l~~ll~~~~~~~~~~~~~~~l~~~l~--------~~~~~e~aA~~vl~~~ 379 (381)
T COG0763 317 GREIVPELIQEDCTPENLARALEELLLNGDRREALKEKFRELHQYLR--------EDPASEIAAQAVLELL 379 (381)
T ss_pred CCccchHHHhhhcCHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHc--------CCcHHHHHHHHHHHHh
Confidence 11110 035689999999999999998666677777777777774 4456777777777654
No 115
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=0.00062 Score=54.72 Aligned_cols=111 Identities=19% Similarity=0.162 Sum_probs=70.7
Q ss_pred EEEEecCcccCCHHHHHH--HHHHHHhCCCcEEEEEcCCCCCCCccchhcccCCchhHHHhhccCCCCeEEecccCh-HH
Q 043168 265 IYVSFGSQNTIAASQMMQ--LAMALEACGKNFIWVVKPPLGFDLNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQ-VE 341 (473)
Q Consensus 265 V~vs~GS~~~~~~~~~~~--~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~ 341 (473)
+|||-||....=...+.. +.+-.+....++|+..|++. ..|-+ +-.++-.++.+- ..
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~d------------~kpva--------gl~v~~F~~~~kiQs 61 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNGD------------IKPVA--------GLRVYGFDKEEKIQS 61 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCCC------------ccccc--------ccEEEeechHHHHHH
Confidence 789999995321222221 22323334568888888761 12210 212332334444 44
Q ss_pred hhcccccceeeeccChhhHHHHHhcCCCEEecccc--------cchhhhHHHHHHHHcceEEEec
Q 043168 342 ILSHKSISAFLSHCGWNSVLEALSHGVPIIGWPLA--------AEQFYNSKLLEEVIGVCVEVAR 398 (473)
Q Consensus 342 lL~~~~~~~~I~HgG~gs~~eal~~GvP~i~~P~~--------~DQ~~~a~~v~~~lG~G~~l~~ 398 (473)
+.+.++ .+|+|+|.||+..++..++|.|++|-. ..|-..|..+++. +.=+...+
T Consensus 62 li~dar--IVISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae~-~~vv~~sp 123 (161)
T COG5017 62 LIHDAR--IVISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAEI-NYVVACSP 123 (161)
T ss_pred Hhhcce--EEEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHhc-CceEEEcC
Confidence 555555 899999999999999999999999953 2588888888866 76666554
No 116
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=97.57 E-value=0.022 Score=58.59 Aligned_cols=103 Identities=15% Similarity=0.135 Sum_probs=68.1
Q ss_pred CCCeEEecccChHHhhcccccceeee---ccC-hhhHHHHHhcCCCEEecccccchhhhHHHHHHHHcceEEEeccc--C
Q 043168 328 GQGLVVQKWAPQVEILSHKSISAFLS---HCG-WNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGM--N 401 (473)
Q Consensus 328 ~~~v~~~~~~p~~~lL~~~~~~~~I~---HgG-~gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~--~ 401 (473)
..++...++.+...++..++ ++|. .=| ..+++||+++|+|+|+....+ .....|+.. ..|..++.+. .
T Consensus 375 ~~~V~f~G~~~~~~~~~~ad--v~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~---G~~eiI~~g-~nG~lv~~~~~~~ 448 (500)
T TIGR02918 375 QDYIHLKGHRNLSEVYKDYE--LYLSASTSEGFGLTLMEAVGSGLGMIGFDVNY---GNPTFIEDN-KNGYLIPIDEEED 448 (500)
T ss_pred CCeEEEcCCCCHHHHHHhCC--EEEEcCccccccHHHHHHHHhCCCEEEecCCC---CCHHHccCC-CCEEEEeCCcccc
Confidence 35678888888888998877 4554 233 348899999999999975421 233344433 4677665310 0
Q ss_pred CccC-HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 043168 402 CEVS-KENLSAKFELVMNETEKGMDLRKKASEVEMII 437 (473)
Q Consensus 402 ~~~~-~~~l~~ai~~~l~~~~~~~~~~~~a~~~~~~~ 437 (473)
..-+ .+.++++|.++++++ ..+.+.+++.+.++.+
T Consensus 449 d~~~~~~~la~~I~~ll~~~-~~~~~~~~a~~~a~~f 484 (500)
T TIGR02918 449 DEDQIITALAEKIVEYFNSN-DIDAFHEYSYQIAEGF 484 (500)
T ss_pred chhHHHHHHHHHHHHHhChH-HHHHHHHHHHHHHHhc
Confidence 1112 788999999999544 5667777787766655
No 117
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=97.49 E-value=0.0048 Score=61.91 Aligned_cols=94 Identities=19% Similarity=0.256 Sum_probs=65.7
Q ss_pred CCCeEEecccChHH---hhcccccceeeec---------cCh-hhHHHHHhcCCCEEecccccchhhhHHHHHHHHcceE
Q 043168 328 GQGLVVQKWAPQVE---ILSHKSISAFLSH---------CGW-NSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCV 394 (473)
Q Consensus 328 ~~~v~~~~~~p~~~---lL~~~~~~~~I~H---------gG~-gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~ 394 (473)
..++.+..|+|+.+ ++..++ ++|.- -|. ++++||+++|+|+|+.... .....+... ..|.
T Consensus 278 ~~~V~~~G~~~~~el~~~l~~aD--v~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~----g~~E~v~~~-~~G~ 350 (406)
T PRK15427 278 EDVVEMPGFKPSHEVKAMLDDAD--VFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHS----GIPELVEAD-KSGW 350 (406)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCC--EEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCC----CchhhhcCC-CceE
Confidence 46788999999855 566666 45542 244 4689999999999987543 334445534 5677
Q ss_pred EEecccCCccCHHHHHHHHHHHHc-CChhhHHHHHHHHHH
Q 043168 395 EVARGMNCEVSKENLSAKFELVMN-ETEKGMDLRKKASEV 433 (473)
Q Consensus 395 ~l~~~~~~~~~~~~l~~ai~~~l~-~~~~~~~~~~~a~~~ 433 (473)
.++. -+.+.++++|.++++ |++..+.+.+++++.
T Consensus 351 lv~~-----~d~~~la~ai~~l~~~d~~~~~~~~~~ar~~ 385 (406)
T PRK15427 351 LVPE-----NDAQALAQRLAAFSQLDTDELAPVVKRAREK 385 (406)
T ss_pred EeCC-----CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 6654 479999999999999 884455566565544
No 118
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.45 E-value=0.0091 Score=59.37 Aligned_cols=82 Identities=10% Similarity=0.154 Sum_probs=58.5
Q ss_pred CCCeEEecccChHH---hhcccccceeeec----cCh-hhHHHHHhcCCCEEecccccchhhhHHHHHHHHcceEEEecc
Q 043168 328 GQGLVVQKWAPQVE---ILSHKSISAFLSH----CGW-NSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARG 399 (473)
Q Consensus 328 ~~~v~~~~~~p~~~---lL~~~~~~~~I~H----gG~-gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~ 399 (473)
..++.+..++|+.+ +++.++ ++|.. -|. .++.||+++|+|+|+.... .+...+... ..|..+..
T Consensus 256 ~~~v~~~G~~~~~~l~~~~~~aD--v~v~pS~~~E~f~~~~lEAma~G~PVI~s~~g----g~~Eiv~~~-~~G~~l~~- 327 (380)
T PRK15484 256 GDRCIMLGGQPPEKMHNYYPLAD--LVVVPSQVEEAFCMVAVEAMAAGKPVLASTKG----GITEFVLEG-ITGYHLAE- 327 (380)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCC--EEEeCCCCccccccHHHHHHHcCCCEEEeCCC----CcHhhcccC-CceEEEeC-
Confidence 46788889998644 577777 45543 333 4778999999999997642 344445544 56765532
Q ss_pred cCCccCHHHHHHHHHHHHcCC
Q 043168 400 MNCEVSKENLSAKFELVMNET 420 (473)
Q Consensus 400 ~~~~~~~~~l~~ai~~~l~~~ 420 (473)
..+++.++++|.++++|+
T Consensus 328 ---~~d~~~la~~I~~ll~d~ 345 (380)
T PRK15484 328 ---PMTSDSIISDINRTLADP 345 (380)
T ss_pred ---CCCHHHHHHHHHHHHcCH
Confidence 358999999999999998
No 119
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.15 E-value=0.061 Score=48.37 Aligned_cols=49 Identities=18% Similarity=0.188 Sum_probs=34.7
Q ss_pred CCCeEEecccCh----HHhhcccccceeeeccC----hhhHHHHHhcCCCEEecccccc
Q 043168 328 GQGLVVQKWAPQ----VEILSHKSISAFLSHCG----WNSVLEALSHGVPIIGWPLAAE 378 (473)
Q Consensus 328 ~~~v~~~~~~p~----~~lL~~~~~~~~I~HgG----~gs~~eal~~GvP~i~~P~~~D 378 (473)
..|+...++++. ..++..++ ++|+-.. .+++.||+++|+|+|+.+....
T Consensus 160 ~~~v~~~~~~~~~~~~~~~~~~~d--i~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~ 216 (229)
T cd01635 160 LDRVIFLGGLDPEELLALLLAAAD--VFVLPSLREGFGLVVLEAMACGLPVIATDVGGP 216 (229)
T ss_pred cccEEEeCCCCcHHHHHHHhhcCC--EEEecccccCcChHHHHHHhCCCCEEEcCCCCc
Confidence 567888788632 22333344 6777776 7899999999999999876543
No 120
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.12 E-value=0.42 Score=49.17 Aligned_cols=74 Identities=19% Similarity=0.114 Sum_probs=49.5
Q ss_pred CCCeEEecccCh-HHhhcccccceeeec---cC-hhhHHHHHhcCCCEEecccccchhhhHHHHHHHHcceEEEecccCC
Q 043168 328 GQGLVVQKWAPQ-VEILSHKSISAFLSH---CG-WNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMNC 402 (473)
Q Consensus 328 ~~~v~~~~~~p~-~~lL~~~~~~~~I~H---gG-~gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~ 402 (473)
..++.+..|..+ ..+|+.++ +||.. -| -+++.||+++|+|+|+... ..+...|.+. ..|..++.
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaAD--VfVlPS~~EGfp~vlLEAMA~GlPVVATdv----GG~~EiV~dG-~nG~LVp~---- 522 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMN--VFILFSRYEGLPNVLIEAQMVGVPVISTPA----GGSAECFIEG-VSGFILDD---- 522 (578)
T ss_pred CCcEEECCChhhHHHHHHhCC--EEEEcccccCccHHHHHHHHhCCCEEEeCC----CCcHHHcccC-CcEEEECC----
Confidence 367888888655 55788866 57643 34 4589999999999998754 3445555545 67877765
Q ss_pred ccCHHHHHHHH
Q 043168 403 EVSKENLSAKF 413 (473)
Q Consensus 403 ~~~~~~l~~ai 413 (473)
-+.+.+.+++
T Consensus 523 -~D~~aLa~ai 532 (578)
T PRK15490 523 -AQTVNLDQAC 532 (578)
T ss_pred -CChhhHHHHH
Confidence 2344454444
No 121
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=97.03 E-value=0.055 Score=52.35 Aligned_cols=45 Identities=13% Similarity=0.182 Sum_probs=40.6
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhC-CCcEEEEEcCCcchhhhhh
Q 043168 7 NIVMFPLMAQGHIIPFLALALHLENT-NRYTITFVNTPSNLKKLKS 51 (473)
Q Consensus 7 ~Il~~~~~~~GHv~P~l~LA~~L~~~-rGh~Vt~~~~~~~~~~v~~ 51 (473)
|||++-....|++.=..++.+.|++. .+.+|++++.+.+.+.++.
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~~~~~ 46 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADIVRL 46 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhhhhhc
Confidence 68999999999999999999999995 5999999999888777764
No 122
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=97.01 E-value=0.0021 Score=53.33 Aligned_cols=80 Identities=28% Similarity=0.379 Sum_probs=49.4
Q ss_pred CCCeEEecccCh-HHhhcccccceeeec--cC-hhhHHHHHhcCCCEEecccccchhhhHHHHHHHHcceEEEecccCCc
Q 043168 328 GQGLVVQKWAPQ-VEILSHKSISAFLSH--CG-WNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMNCE 403 (473)
Q Consensus 328 ~~~v~~~~~~p~-~~lL~~~~~~~~I~H--gG-~gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~~ 403 (473)
.+++...+|++. ..+++.+++.+..+. .| -+++.|++++|+|+|+.+.. ....++.. +.|..+..
T Consensus 52 ~~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~~-----~~~~~~~~-~~~~~~~~----- 120 (135)
T PF13692_consen 52 RPNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDNG-----AEGIVEED-GCGVLVAN----- 120 (135)
T ss_dssp HCTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHHH-----CHCHS----SEEEE-TT-----
T ss_pred CCCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCcc-----hhhheeec-CCeEEECC-----
Confidence 458999999865 557888776444332 22 48999999999999998762 22233334 78877632
Q ss_pred cCHHHHHHHHHHHHcC
Q 043168 404 VSKENLSAKFELVMNE 419 (473)
Q Consensus 404 ~~~~~l~~ai~~~l~~ 419 (473)
+++++.++|.++++|
T Consensus 121 -~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 121 -DPEELAEAIERLLND 135 (135)
T ss_dssp --HHHHHHHHHHHHH-
T ss_pred -CHHHHHHHHHHHhcC
Confidence 899999999999876
No 123
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=96.96 E-value=0.18 Score=49.61 Aligned_cols=111 Identities=13% Similarity=0.050 Sum_probs=72.9
Q ss_pred CCCCCceEEEEcCCCccCHHHHHHHHHHHHhC-CCcEEEEEcCCcchhhhhhcCCCCCCce-EEeccCCCCCCCCCCCCC
Q 043168 1 MAQRKENIVMFPLMAQGHIIPFLALALHLENT-NRYTITFVNTPSNLKKLKSSLPQNSSIH-LREIPFDGIAHDLPPCTE 78 (473)
Q Consensus 1 m~~~~~~Il~~~~~~~GHv~P~l~LA~~L~~~-rGh~Vt~~~~~~~~~~v~~~~~~~~~~~-~~~ip~~~~~~~l~~~~~ 78 (473)
|...++|||++-....|++.=..++.+.|++. .+.+|++++.+.+.+.++.. +.+. ++.++ .. .
T Consensus 1 ~~~~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~----P~id~vi~~~------~~-~--- 66 (352)
T PRK10422 1 MDKPFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSEN----PEINALYGIK------NK-K--- 66 (352)
T ss_pred CCCCCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhccC----CCceEEEEec------cc-c---
Confidence 77778899999999999999999999999986 69999999998888777642 2222 12111 00 0
Q ss_pred CCCCCCCCCchHHHHHHhhhhHHHHHHHhhhhhccCCCCCeEEEeCCCcchHHHHHHHhCCcEEE
Q 043168 79 NSDSLPFHLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNAL 143 (473)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~~~~~~~A~~~giP~v~ 143 (473)
. ........ ...+...++.. ++|++|.-........++...|.|...
T Consensus 67 ---~-------~~~~~~~~-~~~l~~~lr~~-------~yD~vidl~~~~~s~ll~~l~~a~~ri 113 (352)
T PRK10422 67 ---A-------GASEKIKN-FFSLIKVLRAN-------KYDLIVNLTDQWMVALLVRLLNARVKI 113 (352)
T ss_pred ---c-------cHHHHHHH-HHHHHHHHhhC-------CCCEEEEcccchHHHHHHHHhCCCeEE
Confidence 0 00001111 11233455666 899999665444556677777877644
No 124
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=96.60 E-value=0.03 Score=46.63 Aligned_cols=102 Identities=16% Similarity=0.181 Sum_probs=66.8
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhh-hcCCCCCCceEEeccCCCCCCCCCCCCCCCCCCCC
Q 043168 7 NIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKLK-SSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLPF 85 (473)
Q Consensus 7 ~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~-~~~~~~~~~~~~~ip~~~~~~~l~~~~~~~~~~~~ 85 (473)
|||+++.....| ...+++.|.. +||+|++++.....+... . .++++..++.+ .
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~-~g~~V~ii~~~~~~~~~~~~-----~~i~~~~~~~~-------~---------- 54 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKK-RGYDVHIITPRNDYEKYEII-----EGIKVIRLPSP-------R---------- 54 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHH-CCCEEEEEEcCCCchhhhHh-----CCeEEEEecCC-------C----------
Confidence 578888777666 4577999999 999999999855432222 2 56677665421 0
Q ss_pred CCchHHHHHHhhhhHHHHHHHhhhhhccCCCCCeEEEeCCCcc---hHHHHHHHhC-CcEEEEcc
Q 043168 86 HLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFA---WSAEIAQEYG-IFNALFVG 146 (473)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~~---~~~~~A~~~g-iP~v~~~~ 146 (473)
.....+ +. .. .+.++++.. +||+|.+-.... .+..++...+ +|.+....
T Consensus 55 k~~~~~---~~-~~-~l~k~ik~~-------~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~h 107 (139)
T PF13477_consen 55 KSPLNY---IK-YF-RLRKIIKKE-------KPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVH 107 (139)
T ss_pred CccHHH---HH-HH-HHHHHhccC-------CCCEEEEecCChHHHHHHHHHHHcCCCCEEEEec
Confidence 001112 21 22 668889999 999997766443 2445677888 99986644
No 125
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=96.45 E-value=0.02 Score=55.84 Aligned_cols=97 Identities=16% Similarity=0.316 Sum_probs=69.7
Q ss_pred CCCeEEecccChHHhhcc--cccceeeecc-------Ch------hhHHHHHhcCCCEEecccccchhhhHHHHHHHHcc
Q 043168 328 GQGLVVQKWAPQVEILSH--KSISAFLSHC-------GW------NSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGV 392 (473)
Q Consensus 328 ~~~v~~~~~~p~~~lL~~--~~~~~~I~Hg-------G~------gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~ 392 (473)
..|+...+|+|+.++... .+.+++...- .+ +-+.+++++|+|+|+. ++...+..|++. ++
T Consensus 206 ~~~V~f~G~~~~eel~~~l~~~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~----~~~~~~~~V~~~-~~ 280 (333)
T PRK09814 206 SANISYKGWFDPEELPNELSKGFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW----SKAAIADFIVEN-GL 280 (333)
T ss_pred CCCeEEecCCCHHHHHHHHhcCcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC----CCccHHHHHHhC-Cc
Confidence 578999999999776432 1332222111 11 1267789999999985 456788888888 99
Q ss_pred eEEEecccCCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHH
Q 043168 393 CVEVARGMNCEVSKENLSAKFELVMNETEKGMDLRKKASEVEMIIK 438 (473)
Q Consensus 393 G~~l~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~~~~~~~ 438 (473)
|+.++ +.+++.+++..+. + ++.+.|+++++++++.++
T Consensus 281 G~~v~-------~~~el~~~l~~~~-~-~~~~~m~~n~~~~~~~~~ 317 (333)
T PRK09814 281 GFVVD-------SLEELPEIIDNIT-E-EEYQEMVENVKKISKLLR 317 (333)
T ss_pred eEEeC-------CHHHHHHHHHhcC-H-HHHHHHHHHHHHHHHHHh
Confidence 99875 4568888888754 3 356689999999999996
No 126
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=96.24 E-value=0.0068 Score=46.97 Aligned_cols=55 Identities=15% Similarity=0.267 Sum_probs=46.1
Q ss_pred CCchhhhhhhccCCCCceEEEEecCcccC---C--HHHHHHHHHHHHhCCCcEEEEEcCC
Q 043168 247 ISTESCKNWLDTKPCNSVIYVSFGSQNTI---A--ASQMMQLAMALEACGKNFIWVVKPP 301 (473)
Q Consensus 247 ~~~~~l~~~l~~~~~~~~V~vs~GS~~~~---~--~~~~~~~~~al~~~~~~~i~~~~~~ 301 (473)
+.+..+..|+...+.+|.|.||+||.... . ...+..++++++..|+.+|..+...
T Consensus 25 NG~~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~ 84 (97)
T PF06722_consen 25 NGPAVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAA 84 (97)
T ss_dssp -SSEEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTC
T ss_pred CCCCCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHH
Confidence 44677889999988899999999999753 2 2578999999999999999998765
No 127
>PLN02316 synthase/transferase
Probab=96.12 E-value=3.1 Score=46.37 Aligned_cols=83 Identities=6% Similarity=-0.049 Sum_probs=48.8
Q ss_pred CCeEEecccChH---Hhhcccccceeeecc---C-hhhHHHHHhcCCCEEeccccc--chhhh-------HHHHHHHHcc
Q 043168 329 QGLVVQKWAPQV---EILSHKSISAFLSHC---G-WNSVLEALSHGVPIIGWPLAA--EQFYN-------SKLLEEVIGV 392 (473)
Q Consensus 329 ~~v~~~~~~p~~---~lL~~~~~~~~I~Hg---G-~gs~~eal~~GvP~i~~P~~~--DQ~~~-------a~~v~~~lG~ 392 (473)
.++.+....+.. .+++.++ +|+.-. | -.+.+||+++|+|.|+....+ |.... ++..-.. +.
T Consensus 900 ~rV~f~g~~de~lah~iyaaAD--iflmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~-~t 976 (1036)
T PLN02316 900 DRARLCLTYDEPLSHLIYAGAD--FILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLE-PN 976 (1036)
T ss_pred CeEEEEecCCHHHHHHHHHhCc--EEEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccC-Cc
Confidence 455544444442 4676656 566432 2 238899999999988754321 22111 1000001 45
Q ss_pred eEEEecccCCccCHHHHHHHHHHHHcC
Q 043168 393 CVEVARGMNCEVSKENLSAKFELVMNE 419 (473)
Q Consensus 393 G~~l~~~~~~~~~~~~l~~ai~~~l~~ 419 (473)
|...+. .+++.+..+|.++|.+
T Consensus 977 Gflf~~-----~d~~aLa~AL~raL~~ 998 (1036)
T PLN02316 977 GFSFDG-----ADAAGVDYALNRAISA 998 (1036)
T ss_pred eEEeCC-----CCHHHHHHHHHHHHhh
Confidence 766654 5889999999999965
No 128
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=96.06 E-value=0.57 Score=45.81 Aligned_cols=106 Identities=10% Similarity=0.031 Sum_probs=69.5
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhC-CCcEEEEEcCCcchhhhhhcCCCCCCce-EEeccCCCCCCCCCCCCCCCCCCC
Q 043168 7 NIVMFPLMAQGHIIPFLALALHLENT-NRYTITFVNTPSNLKKLKSSLPQNSSIH-LREIPFDGIAHDLPPCTENSDSLP 84 (473)
Q Consensus 7 ~Il~~~~~~~GHv~P~l~LA~~L~~~-rGh~Vt~~~~~~~~~~v~~~~~~~~~~~-~~~ip~~~~~~~l~~~~~~~~~~~ 84 (473)
|||++-....|++.=..++.+.|++. .+.+|++++.+.+.+.++.. +.+. ++.++. ... .
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~----p~vd~vi~~~~---------~~~-----~ 62 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSEN----PDINALYGLDR---------KKA-----K 62 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhcC----CCccEEEEeCh---------hhh-----c
Confidence 68999999999999999999999996 68999999998888777652 2222 222220 000 0
Q ss_pred CCCchHHHHHHhhhhHHHHHHHhhhhhccCCCCCeEEEeCCCcchHHHHHHHhCCcEEE
Q 043168 85 FHLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNAL 143 (473)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~~~~~~~A~~~giP~v~ 143 (473)
.....+. ... .+...++.. ++|++|.-.....+..++...|.|.-.
T Consensus 63 -~~~~~~~----~~~-~l~~~lr~~-------~yD~vidl~~~~~s~ll~~l~~a~~ri 108 (344)
T TIGR02201 63 -AGERKLA----NQF-HLIKVLRAN-------RYDLVVNLTDQWMVAILVKLLNARVKI 108 (344)
T ss_pred -chHHHHH----HHH-HHHHHHHhC-------CCCEEEECCcchHHHHHHHhcCCCeEE
Confidence 0001111 111 223445666 899999665555667788888998654
No 129
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=95.89 E-value=1.1 Score=43.87 Aligned_cols=104 Identities=12% Similarity=-0.047 Sum_probs=69.3
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhC-CCcEEEEEcCCcchhhhhhcCCCCCCceEEeccCCCCCCCCCCCCCCCCCCCC
Q 043168 7 NIVMFPLMAQGHIIPFLALALHLENT-NRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLPF 85 (473)
Q Consensus 7 ~Il~~~~~~~GHv~P~l~LA~~L~~~-rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~ip~~~~~~~l~~~~~~~~~~~~ 85 (473)
|||++-..+.|++.=..++.+.|++. .+.+|++++.+.+.+.++.. +.+.-+ ++++ .. ..
T Consensus 2 rILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~----P~vd~v-i~~~-------~~----~~--- 62 (348)
T PRK10916 2 KILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRM----PEVNEA-IPMP-------LG----HG--- 62 (348)
T ss_pred cEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhcC----CccCEE-Eecc-------cc----cc---
Confidence 79999999999999999999999996 69999999998888877652 222211 1110 00 00
Q ss_pred CCchHHHHHHhhhhHHHHHHHhhhhhccCCCCCeEEEeCCCcchHHHHHHHhCCcEEE
Q 043168 86 HLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNAL 143 (473)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~~~~~~~A~~~giP~v~ 143 (473)
...+ . ....+...++.. ++|+||.=....-...++...|+|.-.
T Consensus 63 --~~~~----~-~~~~l~~~lr~~-------~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 63 --ALEI----G-ERRRLGHSLREK-------RYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred --hhhh----H-HHHHHHHHHHhc-------CCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 0001 0 111234556666 899999766555566778888888644
No 130
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=95.67 E-value=1.2 Score=43.35 Aligned_cols=102 Identities=14% Similarity=-0.016 Sum_probs=67.8
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhC-CCcEEEEEcCCcchhhhhhcCCCCCCce-EEeccCCCCCCCCCCCCCCCCCCC
Q 043168 7 NIVMFPLMAQGHIIPFLALALHLENT-NRYTITFVNTPSNLKKLKSSLPQNSSIH-LREIPFDGIAHDLPPCTENSDSLP 84 (473)
Q Consensus 7 ~Il~~~~~~~GHv~P~l~LA~~L~~~-rGh~Vt~~~~~~~~~~v~~~~~~~~~~~-~~~ip~~~~~~~l~~~~~~~~~~~ 84 (473)
|||++-..+.|++.=..++.+.|++. .+.+|++++.+.+.+.++.. +.+. ++.++ .. .
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~----p~id~v~~~~---------~~-----~-- 60 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLERM----PEIRQAIDMP---------LG-----H-- 60 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhcC----chhceeeecC---------Cc-----c--
Confidence 68999999999999999999999996 69999999988777777652 2222 11111 00 0
Q ss_pred CCCchHHHHHHhhhhHHHHHHHhhhhhccCCCCCeEEEeCCCcchHHHHHHHhCCcEE
Q 043168 85 FHLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNA 142 (473)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~~~~~~~A~~~giP~v 142 (473)
....+. ....+...++.. ++|++|.-....-...++...|+|.-
T Consensus 61 --~~~~~~-----~~~~~~~~lr~~-------~yD~vi~l~~~~~s~ll~~~~~~~~r 104 (334)
T TIGR02195 61 --GALELT-----ERRRLGRSLREE-------RYDQAIVLPNSLKSALIPFFAGIPHR 104 (334)
T ss_pred --cchhhh-----HHHHHHHHHhhc-------CCCEEEECCCCHHHHHHHHHcCCCce
Confidence 000111 111334556666 89999987655556667778888854
No 131
>PRK14098 glycogen synthase; Provisional
Probab=95.30 E-value=0.62 Score=47.97 Aligned_cols=132 Identities=12% Similarity=0.053 Sum_probs=74.3
Q ss_pred eEEEEecCcccC-CHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCccchhcccCCchhHHHhhccCCCCeEEecccChH--
Q 043168 264 VIYVSFGSQNTI-AASQMMQLAMALEACGKNFIWVVKPPLGFDLNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQV-- 340 (473)
Q Consensus 264 ~V~vs~GS~~~~-~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-- 340 (473)
.+++..|..... ..+.+...+..+.+.+..+++ +|.+. ...-+.+.+...+.+.++.+..+++..
T Consensus 308 ~~i~~vgRl~~~KG~d~li~a~~~l~~~~~~lvi-vG~G~-----------~~~~~~l~~l~~~~~~~V~~~g~~~~~~~ 375 (489)
T PRK14098 308 PLVGVIINFDDFQGAELLAESLEKLVELDIQLVI-CGSGD-----------KEYEKRFQDFAEEHPEQVSVQTEFTDAFF 375 (489)
T ss_pred CEEEEeccccccCcHHHHHHHHHHHHhcCcEEEE-EeCCC-----------HHHHHHHHHHHHHCCCCEEEEEecCHHHH
Confidence 455666666532 234444444444444555544 45431 001123433333335678887888764
Q ss_pred -Hhhcccccceeeecc---Ch-hhHHHHHhcCCCEEeccccc--chhhhHHHHHHHHcceEEEecccCCccCHHHHHHHH
Q 043168 341 -EILSHKSISAFLSHC---GW-NSVLEALSHGVPIIGWPLAA--EQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAKF 413 (473)
Q Consensus 341 -~lL~~~~~~~~I~Hg---G~-gs~~eal~~GvP~i~~P~~~--DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ai 413 (473)
.+++.++ +|+... |. .+.+||+++|+|.|+....+ |... ...... +.|...+. .+++.+.++|
T Consensus 376 ~~~~a~aD--i~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~--~~~~~~-~~G~l~~~-----~d~~~la~ai 445 (489)
T PRK14098 376 HLAIAGLD--MLLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIE--EVSEDK-GSGFIFHD-----YTPEALVAKL 445 (489)
T ss_pred HHHHHhCC--EEEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeee--cCCCCC-CceeEeCC-----CCHHHHHHHH
Confidence 4677766 565432 22 26789999999988875432 2111 001113 66777654 5789999999
Q ss_pred HHHH
Q 043168 414 ELVM 417 (473)
Q Consensus 414 ~~~l 417 (473)
.+++
T Consensus 446 ~~~l 449 (489)
T PRK14098 446 GEAL 449 (489)
T ss_pred HHHH
Confidence 9876
No 132
>PRK14099 glycogen synthase; Provisional
Probab=95.20 E-value=4.4 Score=41.69 Aligned_cols=38 Identities=8% Similarity=-0.026 Sum_probs=28.8
Q ss_pred CCceEEEEcC--------CCccCHHHHHHHHHHHHhCCCcEEEEEcCCc
Q 043168 4 RKENIVMFPL--------MAQGHIIPFLALALHLENTNRYTITFVNTPS 44 (473)
Q Consensus 4 ~~~~Il~~~~--------~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~ 44 (473)
+++||+|++. |+.|++ .-.|.++|++ +||+|.++.+.+
T Consensus 2 ~~~~il~v~~E~~p~~k~ggl~dv--~~~lp~~l~~-~g~~v~v~~P~y 47 (485)
T PRK14099 2 TPLRVLSVASEIFPLIKTGGLADV--AGALPAALKA-HGVEVRTLVPGY 47 (485)
T ss_pred CCcEEEEEEeccccccCCCcHHHH--HHHHHHHHHH-CCCcEEEEeCCC
Confidence 4679999873 344444 5577888999 999999999644
No 133
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.19 E-value=0.31 Score=49.72 Aligned_cols=144 Identities=15% Similarity=0.232 Sum_probs=87.4
Q ss_pred CCceEEEEecCcccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCccchhcccCCchhHHHhhccCCCCeEEecccChH
Q 043168 261 CNSVIYVSFGSQNTIAASQMMQLAMALEACGKNFIWVVKPPLGFDLNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQV 340 (473)
Q Consensus 261 ~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 340 (473)
++-+||.+|--....++..++.-++.|...+.-++|....+-..+.+ -....++..-.+..+.+.+-+...
T Consensus 757 ~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge~r---------f~ty~~~~Gl~p~riifs~va~k~ 827 (966)
T KOG4626|consen 757 EDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEQR---------FRTYAEQLGLEPDRIIFSPVAAKE 827 (966)
T ss_pred CCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccchHH---------HHHHHHHhCCCccceeeccccchH
Confidence 34589999988888899999998899999899999998866321111 001111111114555554444433
Q ss_pred Hhhccc-----ccceeeeccChhhHHHHHhcCCCEEecccccchhhhHHHHHHHHcceEEEecccCCccCHHHHHHHHHH
Q 043168 341 EILSHK-----SISAFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAKFEL 415 (473)
Q Consensus 341 ~lL~~~-----~~~~~I~HgG~gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ai~~ 415 (473)
+-.++. .++-+.+ -|..|.++.|+.|||||.+|...--...|...-..+|+|-.+.+ +.++-.+.--+
T Consensus 828 eHvrr~~LaDv~LDTplc-nGhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hliak------~~eEY~~iaV~ 900 (966)
T KOG4626|consen 828 EHVRRGQLADVCLDTPLC-NGHTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLIAK------NREEYVQIAVR 900 (966)
T ss_pred HHHHhhhhhhhcccCcCc-CCcccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHHhh------hHHHHHHHHHH
Confidence 322221 2233444 47889999999999999999765444444444345588875554 34333333334
Q ss_pred HHcCC
Q 043168 416 VMNET 420 (473)
Q Consensus 416 ~l~~~ 420 (473)
+-.|.
T Consensus 901 Latd~ 905 (966)
T KOG4626|consen 901 LATDK 905 (966)
T ss_pred hhcCH
Confidence 55555
No 134
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=95.09 E-value=3 Score=39.23 Aligned_cols=103 Identities=19% Similarity=0.157 Sum_probs=69.4
Q ss_pred CCccCHHHHHHHHHHHHhCCCcEEEEEcC--CcchhhhhhcCCCCCCceEEeccCCCCCCCCCCCCCCCCCCCCCCch-H
Q 043168 14 MAQGHIIPFLALALHLENTNRYTITFVNT--PSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLPFHLFP-N 90 (473)
Q Consensus 14 ~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~--~~~~~~v~~~~~~~~~~~~~~ip~~~~~~~l~~~~~~~~~~~~~~~~-~ 90 (473)
+..-|+.-+-.|-..|.. +||+|.+.|- ..-.+.+.. -||.+..|.- ++ ...+. .
T Consensus 8 ~n~~hvhfFk~lI~elek-kG~ev~iT~rd~~~v~~LLd~-----ygf~~~~Igk----~g------------~~tl~~K 65 (346)
T COG1817 8 GNPPHVHFFKNLIWELEK-KGHEVLITCRDFGVVTELLDL-----YGFPYKSIGK----HG------------GVTLKEK 65 (346)
T ss_pred CCcchhhHHHHHHHHHHh-CCeEEEEEEeecCcHHHHHHH-----hCCCeEeecc----cC------------CccHHHH
Confidence 445577788899999999 9999988773 234445555 3446655541 01 01122 3
Q ss_pred HHHHHhhhhHHHHHHHhhhhhccCCCCCeEEEeCCCcchHHHHHHHhCCcEEEEccc
Q 043168 91 FFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALFVGG 147 (473)
Q Consensus 91 ~~~~~~~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~~~~ 147 (473)
+.... ...-.|.+++.+. +||+.+. ...+.+..+|.-+|+|++.+.-+
T Consensus 66 l~~~~-eR~~~L~ki~~~~-------kpdv~i~-~~s~~l~rvafgLg~psIi~~D~ 113 (346)
T COG1817 66 LLESA-ERVYKLSKIIAEF-------KPDVAIG-KHSPELPRVAFGLGIPSIIFVDN 113 (346)
T ss_pred HHHHH-HHHHHHHHHHhhc-------CCceEee-cCCcchhhHHhhcCCceEEecCC
Confidence 33333 2334677888888 9999999 55778999999999999998443
No 135
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=95.08 E-value=1.5 Score=44.14 Aligned_cols=154 Identities=13% Similarity=0.176 Sum_probs=83.1
Q ss_pred hhhhhccCCCCceEEEEecCcccC------C-H---HHHHHHHHHHHhCCCcEEEEEcCCCCCCC-ccchhcccCCchhH
Q 043168 252 CKNWLDTKPCNSVIYVSFGSQNTI------A-A---SQMMQLAMALEACGKNFIWVVKPPLGFDL-NSEFRANEWLPEGF 320 (473)
Q Consensus 252 l~~~l~~~~~~~~V~vs~GS~~~~------~-~---~~~~~~~~al~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~ 320 (473)
+..|+.....++.|.||.-..... . . ..+..+++.+.+.|++++++..... .+. ..+.. ..-..+
T Consensus 224 ~~~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~-~~~~~~dD~---~~~~~l 299 (426)
T PRK10017 224 VQHWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCTG-IDSYNKDDR---MVALNL 299 (426)
T ss_pred hhhhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEecccC-ccCCCCchH---HHHHHH
Confidence 344554433455788876644311 1 1 2334455555556888876643210 000 00000 011233
Q ss_pred HHhhccCCCCeE-Ee-cccCh--HHhhcccccceeeeccChhhHHHHHhcCCCEEecccccchhhhHHHHHHHHcceEE-
Q 043168 321 EERIKDSGQGLV-VQ-KWAPQ--VEILSHKSISAFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVE- 395 (473)
Q Consensus 321 ~~~~~~~~~~v~-~~-~~~p~--~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~- 395 (473)
.+.+.. +.++. +. ++-+. ..++++++ ++|..= .=++.-|+..|||.+.+++ | +.....+. .+|..-.
T Consensus 300 ~~~~~~-~~~~~vi~~~~~~~e~~~iIs~~d--l~ig~R-lHa~I~a~~~gvP~i~i~Y--~-~K~~~~~~-~lg~~~~~ 371 (426)
T PRK10017 300 RQHVSD-PARYHVVMDELNDLEMGKILGACE--LTVGTR-LHSAIISMNFGTPAIAINY--E-HKSAGIMQ-QLGLPEMA 371 (426)
T ss_pred HHhccc-ccceeEecCCCChHHHHHHHhhCC--EEEEec-chHHHHHHHcCCCEEEeee--h-HHHHHHHH-HcCCccEE
Confidence 333321 22222 22 23333 36777755 677422 2256678899999999987 3 33333444 4487754
Q ss_pred EecccCCccCHHHHHHHHHHHHcCC
Q 043168 396 VARGMNCEVSKENLSAKFELVMNET 420 (473)
Q Consensus 396 l~~~~~~~~~~~~l~~ai~~~l~~~ 420 (473)
.+. ..++.+++.+.+.++++|.
T Consensus 372 ~~~---~~l~~~~Li~~v~~~~~~r 393 (426)
T PRK10017 372 IDI---RHLLDGSLQAMVADTLGQL 393 (426)
T ss_pred ech---hhCCHHHHHHHHHHHHhCH
Confidence 555 6789999999999999886
No 136
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=95.06 E-value=1.7 Score=41.07 Aligned_cols=45 Identities=20% Similarity=0.165 Sum_probs=39.8
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhC-CCcEEEEEcCCcchhhhhh
Q 043168 7 NIVMFPLMAQGHIIPFLALALHLENT-NRYTITFVNTPSNLKKLKS 51 (473)
Q Consensus 7 ~Il~~~~~~~GHv~P~l~LA~~L~~~-rGh~Vt~~~~~~~~~~v~~ 51 (473)
|||++-..+.|++.-+.++.++|++. .+.+|++++.+.+.+.++.
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~ 46 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLEL 46 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhc
Confidence 68999999999999999999999994 4589999999988877765
No 137
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=95.01 E-value=2.7 Score=40.40 Aligned_cols=39 Identities=23% Similarity=0.333 Sum_probs=34.8
Q ss_pred ChHHhhcccccceeeeccChhhHHHHHhcCCCEEeccccc
Q 043168 338 PQVEILSHKSISAFLSHCGWNSVLEALSHGVPIIGWPLAA 377 (473)
Q Consensus 338 p~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~i~~P~~~ 377 (473)
|+...|..++. ++||---.+.+.||+..|+|+.++|...
T Consensus 221 Py~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~ 259 (311)
T PF06258_consen 221 PYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPG 259 (311)
T ss_pred cHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCC
Confidence 67888988886 7888888999999999999999999876
No 138
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=95.01 E-value=3.6 Score=39.70 Aligned_cols=45 Identities=7% Similarity=0.073 Sum_probs=40.1
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhC-CCcEEEEEcCCcchhhhhh
Q 043168 7 NIVMFPLMAQGHIIPFLALALHLENT-NRYTITFVNTPSNLKKLKS 51 (473)
Q Consensus 7 ~Il~~~~~~~GHv~P~l~LA~~L~~~-rGh~Vt~~~~~~~~~~v~~ 51 (473)
|||++-....|++.=..++.+.|++. .+.+|++++.+.+.+.++.
T Consensus 2 ~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~~~ 47 (322)
T PRK10964 2 RVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIPSW 47 (322)
T ss_pred eEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHHhc
Confidence 89999999999999999999999995 6999999998877776653
No 139
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=94.77 E-value=0.07 Score=45.06 Aligned_cols=96 Identities=20% Similarity=0.232 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhCCCcEEEEEcCCcchhhhhhcCCCCCCceEEeccCCCCCCCCCCCCCCCCCCCCCCchHHHHHHhhhh
Q 043168 20 IPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLPFHLFPNFFESTLSFK 99 (473)
Q Consensus 20 ~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~ip~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (473)
.-+..|+++|.+ +||+|++++.......-+. .. .++++..+|.+ .... . ..... ..
T Consensus 5 ~~~~~l~~~L~~-~G~~V~v~~~~~~~~~~~~-~~--~~~~~~~~~~~----~~~~--------~----~~~~~----~~ 60 (160)
T PF13579_consen 5 RYVRELARALAA-RGHEVTVVTPQPDPEDDEE-EE--DGVRVHRLPLP----RRPW--------P----LRLLR----FL 60 (160)
T ss_dssp HHHHHHHHHHHH-TT-EEEEEEE---GGG-SE-EE--TTEEEEEE--S-----SSS--------G----GGHCC----HH
T ss_pred HHHHHHHHHHHH-CCCEEEEEecCCCCccccc-cc--CCceEEeccCC----ccch--------h----hhhHH----HH
Confidence 346789999999 9999999996544442211 11 56677777643 1110 0 00001 11
Q ss_pred HHHHHHH--hhhhhccCCCCCeEEEeCCCcc-hHHHHHH-HhCCcEEEEcc
Q 043168 100 PHFRKLI--NGLIDEQNGHKPVCIIADMFFA-WSAEIAQ-EYGIFNALFVG 146 (473)
Q Consensus 100 ~~l~~~l--~~~~~~~~~~~pDlVI~D~~~~-~~~~~A~-~~giP~v~~~~ 146 (473)
..+.+++ +.. +||+|.+..... ....+++ ..++|+|....
T Consensus 61 ~~~~~~l~~~~~-------~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h 104 (160)
T PF13579_consen 61 RRLRRLLAARRE-------RPDVVHAHSPTAGLVAALARRRRGIPLVVTVH 104 (160)
T ss_dssp HHHHHHCHHCT----------SEEEEEHHHHHHHHHHHHHHHT--EEEE-S
T ss_pred HHHHHHHhhhcc-------CCeEEEecccchhHHHHHHHHccCCcEEEEEC
Confidence 3334555 555 899999877332 2233444 88999988754
No 140
>PHA01633 putative glycosyl transferase group 1
Probab=94.67 E-value=0.85 Score=44.22 Aligned_cols=85 Identities=14% Similarity=0.138 Sum_probs=53.0
Q ss_pred CCCeEEe---cccChH---Hhhcccccceeeec---cCh-hhHHHHHhcCCCEEeccc------ccch------hhhHHH
Q 043168 328 GQGLVVQ---KWAPQV---EILSHKSISAFLSH---CGW-NSVLEALSHGVPIIGWPL------AAEQ------FYNSKL 385 (473)
Q Consensus 328 ~~~v~~~---~~~p~~---~lL~~~~~~~~I~H---gG~-gs~~eal~~GvP~i~~P~------~~DQ------~~~a~~ 385 (473)
+.++.+. +++++. .+++.++ +||.- =|+ .++.||+++|+|+|+--. .+|+ .++...
T Consensus 200 ~~~V~f~g~~G~~~~~dl~~~y~~aD--ifV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~ 277 (335)
T PHA01633 200 PANVHFVAEFGHNSREYIFAFYGAMD--FTIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEE 277 (335)
T ss_pred CCcEEEEecCCCCCHHHHHHHHHhCC--EEEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHH
Confidence 5577776 445543 5666766 56653 244 468899999999998532 2232 222222
Q ss_pred HH--HHHcceEEEecccCCccCHHHHHHHHHHHHcCC
Q 043168 386 LE--EVIGVCVEVARGMNCEVSKENLSAKFELVMNET 420 (473)
Q Consensus 386 v~--~~lG~G~~l~~~~~~~~~~~~l~~ai~~~l~~~ 420 (473)
.. .. |.|...+ ..+++++++++.+++...
T Consensus 278 ~~~~~~-g~g~~~~-----~~d~~~la~ai~~~~~~~ 308 (335)
T PHA01633 278 YYDKEH-GQKWKIH-----KFQIEDMANAIILAFELQ 308 (335)
T ss_pred hcCccc-Cceeeec-----CCCHHHHHHHHHHHHhcc
Confidence 22 23 5565554 479999999999996543
No 141
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=94.17 E-value=4.4 Score=39.45 Aligned_cols=106 Identities=16% Similarity=0.060 Sum_probs=71.6
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhC-CCcEEEEEcCCcchhhhhhcCCCCCCceEEeccCCCCCCCCCCCCCCCCCCC
Q 043168 6 ENIVMFPLMAQGHIIPFLALALHLENT-NRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLP 84 (473)
Q Consensus 6 ~~Il~~~~~~~GHv~P~l~LA~~L~~~-rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~ip~~~~~~~l~~~~~~~~~~~ 84 (473)
+||+++-....|++.=.+++-..|++. .+.++++++.+.+.+.+.... .+. .+...... .
T Consensus 2 ~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~p----~I~-----------~vi~~~~~--~-- 62 (334)
T COG0859 2 MKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLNP----EID-----------KVIIIDKK--K-- 62 (334)
T ss_pred ceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhcCh----Hhh-----------hhcccccc--c--
Confidence 499999999999999999999999985 669999999988888776521 111 11000000 0
Q ss_pred CCCchHHHHHHhhhhHHHHHHHhhhhhccCCCCCeEEEeCCCcchHHHHHHHhCCcEEEE
Q 043168 85 FHLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALF 144 (473)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~ 144 (473)
.. ........+...++.. ++|+||.=...+-...++...++|.-.-
T Consensus 63 ----~~---~~~~~~~~l~~~lr~~-------~yD~vidl~~~~ksa~l~~~~~~~~r~g 108 (334)
T COG0859 63 ----KG---LGLKERLALLRTLRKE-------RYDAVIDLQGLLKSALLALLLGIPFRIG 108 (334)
T ss_pred ----cc---cchHHHHHHHHHhhcc-------CCCEEEECcccHHHHHHHHHhCCCcccc
Confidence 00 1112223445666666 8999998776776777788888886543
No 142
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=93.56 E-value=2.5 Score=43.16 Aligned_cols=137 Identities=17% Similarity=0.191 Sum_probs=86.6
Q ss_pred CCCceEEEEecCcccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCccchhcccCCchhHHHhhccC---CCCeEEecc
Q 043168 260 PCNSVIYVSFGSQNTIAASQMMQLAMALEACGKNFIWVVKPPLGFDLNSEFRANEWLPEGFEERIKDS---GQGLVVQKW 336 (473)
Q Consensus 260 ~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~ 336 (473)
+++.+||++|+......++.+..=++.|...+--++|..+.+. + +.+...+++..+.. +..+++.+-
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~----~------~~~~~~l~~la~~~Gv~~eRL~f~p~ 496 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGD----D------AEINARLRDLAEREGVDSERLRFLPP 496 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCC----c------HHHHHHHHHHHHHcCCChhheeecCC
Confidence 3466999999999999999999888888888888999887752 1 11333444433311 355566565
Q ss_pred cChHHhhcc-cccceee---eccChhhHHHHHhcCCCEEecccccchhh--hHHHHHHHHcceEEEecccCCccCHHHHH
Q 043168 337 APQVEILSH-KSISAFL---SHCGWNSVLEALSHGVPIIGWPLAAEQFY--NSKLLEEVIGVCVEVARGMNCEVSKENLS 410 (473)
Q Consensus 337 ~p~~~lL~~-~~~~~~I---~HgG~gs~~eal~~GvP~i~~P~~~DQ~~--~a~~v~~~lG~G~~l~~~~~~~~~~~~l~ 410 (473)
.|...-+.+ .-.++|. --||+.|..|+|..|||+|..+ ++||. |+..+...+|+--.+.. -.++-|.
T Consensus 497 ~~~~~h~a~~~iADlvLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~agi~e~vA~-----s~~dYV~ 569 (620)
T COG3914 497 APNEDHRARYGIADLVLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATNAGIPELVAD-----SRADYVE 569 (620)
T ss_pred CCCHHHHHhhchhheeeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHhcCCchhhcC-----CHHHHHH
Confidence 555433221 1122454 3599999999999999999886 77764 33444422233323322 2445666
Q ss_pred HHH
Q 043168 411 AKF 413 (473)
Q Consensus 411 ~ai 413 (473)
.+|
T Consensus 570 ~av 572 (620)
T COG3914 570 KAV 572 (620)
T ss_pred HHH
Confidence 666
No 143
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=92.81 E-value=0.95 Score=34.48 Aligned_cols=65 Identities=22% Similarity=0.261 Sum_probs=41.8
Q ss_pred ccChhhHHHHHhcCCCEEecccccchhhhHHHHHHHHcceEEEecccCCccCHHHHHHHHHHHHcCChhhHHHHHHH
Q 043168 354 HCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAKFELVMNETEKGMDLRKKA 430 (473)
Q Consensus 354 HgG~gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a 430 (473)
+|-..-+.|++++|+|+|.-+. ......+. . |.....- . +.+++.++|..+++|++.++.+++++
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~~-~-~~~~~~~-----~-~~~el~~~i~~ll~~~~~~~~ia~~a 73 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIFE-D-GEHIITY-----N-DPEELAEKIEYLLENPEERRRIAKNA 73 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHcC-C-CCeEEEE-----C-CHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 4555688999999999998754 22222221 2 3222221 2 89999999999999994443444433
No 144
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=92.28 E-value=1.5 Score=37.81 Aligned_cols=92 Identities=10% Similarity=0.002 Sum_probs=51.0
Q ss_pred CCcEEEEEcCCcchhhhhhcCCCCCCceEEeccCCCCCCCCCCCCCCCCCCC-CCCchHHHHHHhhhhHHHHHHHhhhhh
Q 043168 33 NRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLP-FHLFPNFFESTLSFKPHFRKLINGLID 111 (473)
Q Consensus 33 rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~ip~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~ 111 (473)
+||+|+|+|........ +|++...+..+ ..... ...+ ...++.-........+.+.++-+.-.
T Consensus 2 ~gh~v~fl~~~~~~~~~-------~GV~~~~y~~~-------~~~~~-~~~~~~~~~e~~~~rg~av~~a~~~L~~~Gf- 65 (171)
T PF12000_consen 2 RGHEVVFLTERKRPPIP-------PGVRVVRYRPP-------RGPTP-GTHPYVRDFEAAVLRGQAVARAARQLRAQGF- 65 (171)
T ss_pred CCCEEEEEecCCCCCCC-------CCcEEEEeCCC-------CCCCC-CCCcccccHHHHHHHHHHHHHHHHHHHHcCC-
Confidence 79999999944333222 24555544311 11000 1111 11122222333444445555544422
Q ss_pred ccCCCCCeEEEeCCCcchHHHHHHHh-CCcEEEEc
Q 043168 112 EQNGHKPVCIIADMFFAWSAEIAQEY-GIFNALFV 145 (473)
Q Consensus 112 ~~~~~~pDlVI~D~~~~~~~~~A~~~-giP~v~~~ 145 (473)
.||+||+-...-.+..+-..+ ++|.+.+.
T Consensus 66 -----~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~ 95 (171)
T PF12000_consen 66 -----VPDVIIAHPGWGETLFLKDVFPDAPLIGYF 95 (171)
T ss_pred -----CCCEEEEcCCcchhhhHHHhCCCCcEEEEE
Confidence 899999998666778888888 99999873
No 145
>PHA01630 putative group 1 glycosyl transferase
Probab=91.15 E-value=8.5 Score=37.38 Aligned_cols=73 Identities=18% Similarity=0.089 Sum_probs=43.4
Q ss_pred ccChHH---hhcccccceeee---ccC-hhhHHHHHhcCCCEEecccccchhhhHHHHHHH-------------------
Q 043168 336 WAPQVE---ILSHKSISAFLS---HCG-WNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEV------------------- 389 (473)
Q Consensus 336 ~~p~~~---lL~~~~~~~~I~---HgG-~gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~------------------- 389 (473)
++|+.+ +++.+++ +|. ..| -.++.||+++|+|+|+....+ +...+...
T Consensus 197 ~v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg----~~E~i~~~~ng~lv~~~~~~~~~~~~~ 270 (331)
T PHA01630 197 PLPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKGA----WSEWVLSNLDVYWIKSGRKPKLWYTNP 270 (331)
T ss_pred cCCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCCC----chhhccCCCceEEeeecccccccccCC
Confidence 366544 5777664 442 233 447899999999999975432 11112211
Q ss_pred HcceEEEecccCCccCHHHHHHHHHHHHcCC
Q 043168 390 IGVCVEVARGMNCEVSKENLSAKFELVMNET 420 (473)
Q Consensus 390 lG~G~~l~~~~~~~~~~~~l~~ai~~~l~~~ 420 (473)
-++|..+. .+.+++.+++.++|.|+
T Consensus 271 ~~~G~~v~------~~~~~~~~~ii~~l~~~ 295 (331)
T PHA01630 271 IHVGYFLD------PDIEDAYQKLLEALANW 295 (331)
T ss_pred cccccccC------CCHHHHHHHHHHHHhCC
Confidence 02344333 26788888888888873
No 146
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=90.61 E-value=1.3 Score=37.72 Aligned_cols=29 Identities=24% Similarity=0.158 Sum_probs=23.0
Q ss_pred CccCHHHHHHHHHHHHhCCCcEEEEEcCCc
Q 043168 15 AQGHIIPFLALALHLENTNRYTITFVNTPS 44 (473)
Q Consensus 15 ~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~ 44 (473)
..|=-.-+..|+++|.+ +||+|+++++..
T Consensus 11 ~GG~e~~~~~l~~~l~~-~G~~v~v~~~~~ 39 (177)
T PF13439_consen 11 IGGAERVVLNLARALAK-RGHEVTVVSPGV 39 (177)
T ss_dssp SSHHHHHHHHHHHHHHH-TT-EEEEEESS-
T ss_pred CChHHHHHHHHHHHHHH-CCCEEEEEEcCC
Confidence 55666678999999999 999999998553
No 147
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=90.08 E-value=3.2 Score=35.98 Aligned_cols=111 Identities=18% Similarity=0.178 Sum_probs=60.6
Q ss_pred EcCCCccCHHHHHHHHHHHHhC-CCcEEEEEcCCcchhh--hh---hcCCCCCCceEEeccCCCCCCCCCCCCCCCCCCC
Q 043168 11 FPLMAQGHIIPFLALALHLENT-NRYTITFVNTPSNLKK--LK---SSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLP 84 (473)
Q Consensus 11 ~~~~~~GHv~P~l~LA~~L~~~-rGh~Vt~~~~~~~~~~--v~---~~~~~~~~~~~~~ip~~~~~~~l~~~~~~~~~~~ 84 (473)
+..++.||+.=++.|.+.+... ..++..+++..+.... +. +... ....+..+|.. ....
T Consensus 3 ~v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~~~--~~~~~~~~~r~-------------r~v~ 67 (170)
T PF08660_consen 3 VVLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKSSS--KRHKILEIPRA-------------REVG 67 (170)
T ss_pred EEEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHhcc--ccceeeccceE-------------EEec
Confidence 4458899999999999999332 4566666665443222 11 1111 01123333311 0111
Q ss_pred CCCchHHHHHHhhhhHHHHHHHhhhhhccCCCCCeEEEeCCCcch--HHHHHHHh------CCcEEEE
Q 043168 85 FHLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAW--SAEIAQEY------GIFNALF 144 (473)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~~~--~~~~A~~~------giP~v~~ 144 (473)
.......+..+......+. ++... +||+||+..-..+ ...+|..+ |.+.|.+
T Consensus 68 q~~~~~~~~~l~~~~~~~~-il~r~-------rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyI 127 (170)
T PF08660_consen 68 QSYLTSIFTTLRAFLQSLR-ILRRE-------RPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYI 127 (170)
T ss_pred hhhHhhHHHHHHHHHHHHH-HHHHh-------CCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEE
Confidence 1112333333333333333 34455 7999998876654 45688889 9998887
No 148
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=89.78 E-value=4.1 Score=41.49 Aligned_cols=104 Identities=13% Similarity=0.093 Sum_probs=65.5
Q ss_pred ecccChHH---hhcccccceeee---ccChh-hHHHHHhcCCC----EEecccccchhhhHHHHHHHHcceEEEecccCC
Q 043168 334 QKWAPQVE---ILSHKSISAFLS---HCGWN-SVLEALSHGVP----IIGWPLAAEQFYNSKLLEEVIGVCVEVARGMNC 402 (473)
Q Consensus 334 ~~~~p~~~---lL~~~~~~~~I~---HgG~g-s~~eal~~GvP----~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~ 402 (473)
...+++.+ +++.++ +++. +=|+| +..||+++|+| +|+--+.+- +..+ +-|+.+++
T Consensus 341 ~~~~~~~el~aly~aaD--v~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~----~~~l----~~gllVnP---- 406 (456)
T TIGR02400 341 NRSYDREELMALYRAAD--VGLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGA----AQEL----NGALLVNP---- 406 (456)
T ss_pred cCCCCHHHHHHHHHhCc--EEEECccccccCccHHHHHHhcCCCCceEEEeCCCCC----hHHh----CCcEEECC----
Confidence 34566654 466666 4554 44655 67799999999 666544432 2211 44666655
Q ss_pred ccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHH
Q 043168 403 EVSKENLSAKFELVMNETEKGMDLRKKASEVEMIIKNAVRNEEKFKGSSVKAMEQFLDAAL 463 (473)
Q Consensus 403 ~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~ 463 (473)
.+.+.++++|.++|+++. +..+++.+++.+.+.+ -+...-++++++.+.
T Consensus 407 -~d~~~lA~aI~~aL~~~~--~er~~r~~~~~~~v~~---------~~~~~W~~~~l~~l~ 455 (456)
T TIGR02400 407 -YDIDGMADAIARALTMPL--EEREERHRAMMDKLRK---------NDVQRWREDFLSDLN 455 (456)
T ss_pred -CCHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHhh---------CCHHHHHHHHHHHhh
Confidence 589999999999999761 1455556666665541 235666777776653
No 149
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=89.52 E-value=1.4 Score=37.42 Aligned_cols=59 Identities=17% Similarity=0.159 Sum_probs=46.2
Q ss_pred CCCCCceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhhcCCCCCCceEEecc
Q 043168 1 MAQRKENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIP 65 (473)
Q Consensus 1 m~~~~~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~ip 65 (473)
|..+.+||++...|+-|-..-++.+++.|.+ .|+.|-=+.++...+--.. -||+.+++.
T Consensus 1 ~~~~~mki~ITG~PGvGKtTl~~ki~e~L~~-~g~kvgGf~t~EVR~gGkR-----~GF~Ivdl~ 59 (179)
T COG1618 1 MIKMAMKIFITGRPGVGKTTLVLKIAEKLRE-KGYKVGGFITPEVREGGKR-----IGFKIVDLA 59 (179)
T ss_pred CCCcceEEEEeCCCCccHHHHHHHHHHHHHh-cCceeeeEEeeeeecCCeE-----eeeEEEEcc
Confidence 4455679999999999999999999999999 9999877666765544444 455766654
No 150
>PRK10125 putative glycosyl transferase; Provisional
Probab=89.41 E-value=11 Score=37.68 Aligned_cols=71 Identities=21% Similarity=0.155 Sum_probs=43.7
Q ss_pred CeEEecccC-h---HHhhcccccceeeec----cChhhHHHHHhcCCCEEecccccchhhhHHHHHHHHcceEEEecccC
Q 043168 330 GLVVQKWAP-Q---VEILSHKSISAFLSH----CGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMN 401 (473)
Q Consensus 330 ~v~~~~~~p-~---~~lL~~~~~~~~I~H----gG~gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~ 401 (473)
++....+.. + ..+++.++ +||.- |--.+++||+++|+|+|+....+ ....+ .. +.|..++.
T Consensus 287 ~v~~~g~~~~~~~l~~~y~~aD--vfV~pS~~Egfp~vilEAmA~G~PVVat~~gG----~~Eiv-~~-~~G~lv~~--- 355 (405)
T PRK10125 287 NVVNHGFETDKRKLMSALNQMD--ALVFSSRVDNYPLILCEALSIGVPVIATHSDA----AREVL-QK-SGGKTVSE--- 355 (405)
T ss_pred ceEEecCcCCHHHHHHHHHhCC--EEEECCccccCcCHHHHHHHcCCCEEEeCCCC----hHHhE-eC-CcEEEECC---
Confidence 444445542 2 33455555 56543 33457899999999999987654 22223 35 56877765
Q ss_pred CccCHHHHHHHH
Q 043168 402 CEVSKENLSAKF 413 (473)
Q Consensus 402 ~~~~~~~l~~ai 413 (473)
-+++.+++++
T Consensus 356 --~d~~~La~~~ 365 (405)
T PRK10125 356 --EEVLQLAQLS 365 (405)
T ss_pred --CCHHHHHhcc
Confidence 3777777654
No 151
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=88.56 E-value=1.3 Score=45.80 Aligned_cols=93 Identities=8% Similarity=0.071 Sum_probs=65.5
Q ss_pred CCeEEecccC--h-HHhhcccccceeeecc---ChhhHHHHHhcCCCEEecccccchhhhHHHHHHHHcceEEEecccCC
Q 043168 329 QGLVVQKWAP--Q-VEILSHKSISAFLSHC---GWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMNC 402 (473)
Q Consensus 329 ~~v~~~~~~p--~-~~lL~~~~~~~~I~Hg---G~gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~ 402 (473)
..+.+..+.. + ..++.+++ ++|.=+ |.++..||+.+|+|+| .......|+.. .-|..+.
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~ar--l~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V~d~-~NG~li~----- 473 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLR--LIIDLSKEPDLYTQISGISAGIPQI-------NKVETDYVEHN-KNGYIID----- 473 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhhe--EEEECCCCCChHHHHHHHHcCCCee-------ecCCceeeEcC-CCcEEeC-----
Confidence 4677777777 4 56777766 677655 6779999999999999 22233344434 5555552
Q ss_pred ccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHH
Q 043168 403 EVSKENLSAKFELVMNETEKGMDLRKKASEVEMIIK 438 (473)
Q Consensus 403 ~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~~~~~~~ 438 (473)
+..++.+++..+|.+...++.+...+-+.+....
T Consensus 474 --d~~~l~~al~~~L~~~~~wn~~~~~sy~~~~~yS 507 (519)
T TIGR03713 474 --DISELLKALDYYLDNLKNWNYSLAYSIKLIDDYS 507 (519)
T ss_pred --CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhh
Confidence 7899999999999998666666666666665553
No 152
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=88.52 E-value=1.2 Score=37.03 Aligned_cols=45 Identities=13% Similarity=0.186 Sum_probs=39.1
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhh
Q 043168 4 RKENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKL 49 (473)
Q Consensus 4 ~~~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v 49 (473)
.+.+|++.+.++-+|-.-..-++..|++ .|++|+++......+.+
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~-~G~eVi~LG~~vp~e~i 46 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTE-AGFEVINLGVMTSQEEF 46 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHH-CCCEEEECCCCCCHHHH
Confidence 4679999999999999999999999999 99999999965544443
No 153
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.26 E-value=2.7 Score=39.34 Aligned_cols=84 Identities=18% Similarity=0.315 Sum_probs=52.9
Q ss_pred cccChHHhhcccccceeeeccChhhHHHHHhcCCCEEecccccchhh--hHHHHHHHHcceEEEecccCCccCHHHHHHH
Q 043168 335 KWAPQVEILSHKSISAFLSHCGWNSVLEALSHGVPIIGWPLAAEQFY--NSKLLEEVIGVCVEVARGMNCEVSKENLSAK 412 (473)
Q Consensus 335 ~~~p~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~i~~P~~~DQ~~--~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~a 412 (473)
.|-...++|.+++ +.|--.|- .+-+++-.|+|+|.+|-.+-|+. .|.|=.+.||+.+.+-. ...+.+..
T Consensus 301 sqqsfadiLH~ad--aalgmAGT-AtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~------~~aq~a~~ 371 (412)
T COG4370 301 SQQSFADILHAAD--AALGMAGT-ATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVR------PEAQAAAQ 371 (412)
T ss_pred eHHHHHHHHHHHH--HHHHhccc-hHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecC------CchhhHHH
Confidence 3344455666655 33332322 23356788999999999988864 56666777799988875 33334444
Q ss_pred -HHHHHcCChhhHHHHHHHH
Q 043168 413 -FELVMNETEKGMDLRKKAS 431 (473)
Q Consensus 413 -i~~~l~~~~~~~~~~~~a~ 431 (473)
.+++|.|+ .+.++++
T Consensus 372 ~~q~ll~dp----~r~~air 387 (412)
T COG4370 372 AVQELLGDP----QRLTAIR 387 (412)
T ss_pred HHHHHhcCh----HHHHHHH
Confidence 44499999 5554444
No 154
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=86.30 E-value=18 Score=36.64 Aligned_cols=80 Identities=15% Similarity=0.206 Sum_probs=56.5
Q ss_pred CCeEE-ecccC-h-HHhhcccccceeeeccC--hhhHHHHHhcCCCEEecccccchhhhHHHHHHHHcceEEEecccCCc
Q 043168 329 QGLVV-QKWAP-Q-VEILSHKSISAFLSHCG--WNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMNCE 403 (473)
Q Consensus 329 ~~v~~-~~~~p-~-~~lL~~~~~~~~I~HgG--~gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~~ 403 (473)
+|++. ..+.+ . .+++..|++-+-|+||. ..++.||+.+|+|++..=...... ..+. . |.....
T Consensus 328 ~nvvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~~~---~~i~---~-g~l~~~----- 395 (438)
T TIGR02919 328 DNVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAHNR---DFIA---S-ENIFEH----- 395 (438)
T ss_pred CCcEEECCcChHHHHHHHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccCCc---cccc---C-CceecC-----
Confidence 45554 44566 3 77999999988899977 568999999999999875432211 1112 1 333332
Q ss_pred cCHHHHHHHHHHHHcCC
Q 043168 404 VSKENLSAKFELVMNET 420 (473)
Q Consensus 404 ~~~~~l~~ai~~~l~~~ 420 (473)
-+.+++.++|.++|.++
T Consensus 396 ~~~~~m~~~i~~lL~d~ 412 (438)
T TIGR02919 396 NEVDQLISKLKDLLNDP 412 (438)
T ss_pred CCHHHHHHHHHHHhcCH
Confidence 46899999999999998
No 155
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=85.74 E-value=21 Score=34.47 Aligned_cols=82 Identities=16% Similarity=0.187 Sum_probs=60.1
Q ss_pred CCeE-EecccCh---HHhhcccccceeeec--cChhhHHHHHhcCCCEEecccccchhhhHHHHHHHHcceEEEecccCC
Q 043168 329 QGLV-VQKWAPQ---VEILSHKSISAFLSH--CGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMNC 402 (473)
Q Consensus 329 ~~v~-~~~~~p~---~~lL~~~~~~~~I~H--gG~gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~ 402 (473)
+++. +.+++|. .++|+.++++.|+|. =|.|+++-.|++|+|++.- -+=+.+- -+.+. |+-+--.. +
T Consensus 245 ~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~---~~np~~~-~l~~~-~ipVlf~~---d 316 (360)
T PF07429_consen 245 ENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLS---RDNPFWQ-DLKEQ-GIPVLFYG---D 316 (360)
T ss_pred cceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEe---cCChHHH-HHHhC-CCeEEecc---c
Confidence 4664 4567774 668889888777664 5899999999999999886 3333333 44446 77776665 6
Q ss_pred ccCHHHHHHHHHHHHc
Q 043168 403 EVSKENLSAKFELVMN 418 (473)
Q Consensus 403 ~~~~~~l~~ai~~~l~ 418 (473)
.++...|+++=+++..
T Consensus 317 ~L~~~~v~ea~rql~~ 332 (360)
T PF07429_consen 317 ELDEALVREAQRQLAN 332 (360)
T ss_pred cCCHHHHHHHHHHHhh
Confidence 8999999998887764
No 156
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=85.64 E-value=5.2 Score=38.50 Aligned_cols=44 Identities=20% Similarity=0.133 Sum_probs=36.0
Q ss_pred eEEEEcC-CCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhh
Q 043168 7 NIVMFPL-MAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (473)
Q Consensus 7 ~Il~~~~-~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~~ 51 (473)
||+|++. |+-|-.+-..++|-.|++ .|.+|.++++++.+..-..
T Consensus 3 riv~f~GKGGVGKTT~aaA~A~~lA~-~g~kvLlvStDPAhsL~d~ 47 (322)
T COG0003 3 RIVFFTGKGGVGKTTIAAATAVKLAE-SGKKVLLVSTDPAHSLGDV 47 (322)
T ss_pred EEEEEecCCcccHHHHHHHHHHHHHH-cCCcEEEEEeCCCCchHhh
Confidence 7877775 799999999999999999 9988888887776555443
No 157
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=84.48 E-value=34 Score=31.66 Aligned_cols=78 Identities=23% Similarity=0.329 Sum_probs=50.2
Q ss_pred HHHHHHHHhCCCcEEEEEcCCCCCCCccchhcccCCchhHHHhhcc---CCCCeEE----ecccChHHhhcccccceeee
Q 043168 281 MQLAMALEACGKNFIWVVKPPLGFDLNSEFRANEWLPEGFEERIKD---SGQGLVV----QKWAPQVEILSHKSISAFLS 353 (473)
Q Consensus 281 ~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~----~~~~p~~~lL~~~~~~~~I~ 353 (473)
..+.+.+++.|..|+++.... -|+.....+.+ ....++- .++=|+-+.|..++- .++|
T Consensus 187 ~~l~k~l~~~g~~~lisfSRR--------------Tp~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Ady-ii~T 251 (329)
T COG3660 187 SLLVKILENQGGSFLISFSRR--------------TPDTVKSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAADY-IIST 251 (329)
T ss_pred HHHHHHHHhCCceEEEEeecC--------------CcHHHHHHHHhccccCceeEeCCCCCCCCchHHHHhhcce-EEEe
Confidence 345677788999999988755 33333332221 0112211 244588899988763 5566
Q ss_pred ccChhhHHHHHhcCCCEEec
Q 043168 354 HCGWNSVLEALSHGVPIIGW 373 (473)
Q Consensus 354 HgG~gs~~eal~~GvP~i~~ 373 (473)
--..|...||++.|+|+.++
T Consensus 252 aDSinM~sEAasTgkPv~~~ 271 (329)
T COG3660 252 ADSINMCSEAASTGKPVFIL 271 (329)
T ss_pred cchhhhhHHHhccCCCeEEE
Confidence 67788889999999999553
No 158
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=84.21 E-value=41 Score=32.45 Aligned_cols=127 Identities=11% Similarity=0.007 Sum_probs=73.4
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhhcCCCCCCceEEeccCCCCCCCCCCCCCCCCCC
Q 043168 4 RKENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSL 83 (473)
Q Consensus 4 ~~~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~ip~~~~~~~l~~~~~~~~~~ 83 (473)
.++|++++..|-.||--++--=|..|+. .|.+|.+++.-...+.-+-..- ++++++.++-+....+.
T Consensus 11 ~k~ra~vvVLGDvGRSPRMqYHA~Sla~-~gf~VdliGy~~s~p~e~l~~h--prI~ih~m~~l~~~~~~---------- 77 (444)
T KOG2941|consen 11 KKKRAIVVVLGDVGRSPRMQYHALSLAK-LGFQVDLIGYVESIPLEELLNH--PRIRIHGMPNLPFLQGG---------- 77 (444)
T ss_pred ccceEEEEEecccCCChHHHHHHHHHHH-cCCeEEEEEecCCCChHHHhcC--CceEEEeCCCCcccCCC----------
Confidence 4679999999999998888888999999 9999999985443222222222 88999988733111111
Q ss_pred CCCCchHHHHHHhhhhHHHHHHHhhhhhccCCCCCeEEEeCCCc-chHHHHH----HHhCCcEEEEccccHHH
Q 043168 84 PFHLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFF-AWSAEIA----QEYGIFNALFVGGGSFG 151 (473)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~-~~~~~~A----~~~giP~v~~~~~~~~~ 151 (473)
+. .+......+.+...-+-.++... ++|.|+...=. .....++ -..|..++.=++...+.
T Consensus 78 p~-~~~l~lKvf~Qfl~Ll~aL~~~~-------~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Ys 142 (444)
T KOG2941|consen 78 PR-VLFLPLKVFWQFLSLLWALFVLR-------PPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGYS 142 (444)
T ss_pred ch-hhhhHHHHHHHHHHHHHHHHhcc-------CCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHHH
Confidence 11 01111122222222223334433 78888865422 1223333 44578888766665554
No 159
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=83.07 E-value=32 Score=32.73 Aligned_cols=81 Identities=12% Similarity=0.195 Sum_probs=56.0
Q ss_pred CCeE-EecccC---hHHhhcccccceeeec--cChhhHHHHHhcCCCEEecccccchhhhHHHHHHHHcceEEEecccCC
Q 043168 329 QGLV-VQKWAP---QVEILSHKSISAFLSH--CGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMNC 402 (473)
Q Consensus 329 ~~v~-~~~~~p---~~~lL~~~~~~~~I~H--gG~gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~ 402 (473)
+++. +.+++| +..+|+.++++.|+|+ =|.||++-.|++|||+++- -+=+.|....+ . |+-+-.+. +
T Consensus 206 ~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~---r~n~fwqdl~e-~-gv~Vlf~~---d 277 (322)
T PRK02797 206 ENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLS---RDNPFWQDLTE-Q-GLPVLFTG---D 277 (322)
T ss_pred ccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEe---cCCchHHHHHh-C-CCeEEecC---C
Confidence 4554 344565 5778999999888775 4899999999999999886 33344444333 5 77775555 6
Q ss_pred ccCHHHHHHHHHHHH
Q 043168 403 EVSKENLSAKFELVM 417 (473)
Q Consensus 403 ~~~~~~l~~ai~~~l 417 (473)
.++...+.++=+++.
T Consensus 278 ~L~~~~v~e~~rql~ 292 (322)
T PRK02797 278 DLDEDIVREAQRQLA 292 (322)
T ss_pred cccHHHHHHHHHHHH
Confidence 787777777654443
No 160
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=82.88 E-value=2.4 Score=34.10 Aligned_cols=38 Identities=16% Similarity=0.182 Sum_probs=34.0
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcc
Q 043168 7 NIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSN 45 (473)
Q Consensus 7 ~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~ 45 (473)
||++.+.++-.|.....-++..|++ .|++|++......
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~-~G~~V~~lg~~~~ 38 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRD-AGFEVIDLGVDVP 38 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHH-CCCEEEECCCCCC
Confidence 5899999999999999999999999 9999998875443
No 161
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=82.01 E-value=10 Score=35.25 Aligned_cols=90 Identities=13% Similarity=0.090 Sum_probs=53.6
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcc-hhhhhhcCCCCCCceEEeccCCCCCCCCCCCCCCCCCCCC
Q 043168 7 NIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSN-LKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLPF 85 (473)
Q Consensus 7 ~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~-~~~v~~~~~~~~~~~~~~ip~~~~~~~l~~~~~~~~~~~~ 85 (473)
||+++..-+. -..||+.|.+ +||+|+..+.... .+.+...+. ..++. . .+
T Consensus 2 ~ILvlGGT~e-----gr~la~~L~~-~g~~v~~s~~t~~~~~~~~~~g~----~~v~~-g------~l------------ 52 (256)
T TIGR00715 2 TVLLMGGTVD-----SRAIAKGLIA-QGIEILVTVTTSEGKHLYPIHQA----LTVHT-G------AL------------ 52 (256)
T ss_pred eEEEEechHH-----HHHHHHHHHh-CCCeEEEEEccCCccccccccCC----ceEEE-C------CC------------
Confidence 6666654333 5689999999 9999887774432 222222110 01110 0 00
Q ss_pred CCchHHHHHHhhhhHHHHHHHhhhhhccCCCCCeEEEeCCCcch------HHHHHHHhCCcEEEE
Q 043168 86 HLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAW------SAEIAQEYGIFNALF 144 (473)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~~~------~~~~A~~~giP~v~~ 144 (473)
-...+.+++++. ++|+||--.+.+. +..+|+++|||++.+
T Consensus 53 ------------~~~~l~~~l~~~-------~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~ 98 (256)
T TIGR00715 53 ------------DPQELREFLKRH-------SIDILVDATHPFAAQITTNATAVCKELGIPYVRF 98 (256)
T ss_pred ------------CHHHHHHHHHhc-------CCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 012356788888 8997774443332 346899999999998
No 162
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=80.29 E-value=3.1 Score=36.82 Aligned_cols=49 Identities=8% Similarity=-0.090 Sum_probs=37.7
Q ss_pred CCCCCceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhh
Q 043168 1 MAQRKENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKLK 50 (473)
Q Consensus 1 m~~~~~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~ 50 (473)
|+...+||++.-.|+.|=+.-...+++.|++ +||+|.++.++...+.+.
T Consensus 1 ~~l~~k~IllgVTGsiaa~k~a~~lir~L~k-~G~~V~vv~T~aA~~~~~ 49 (196)
T PRK08305 1 MSLKGKRIGFGLTGSHCTYDEVMPEIEKLVD-EGAEVTPIVSYTVQTTDT 49 (196)
T ss_pred CCCCCCEEEEEEcCHHHHHHHHHHHHHHHHh-CcCEEEEEECHhHHHHhh
Confidence 5555668887776765554447999999999 999999999887766554
No 163
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=79.28 E-value=11 Score=38.41 Aligned_cols=73 Identities=12% Similarity=0.099 Sum_probs=46.6
Q ss_pred EecccChHH---hhcccccceeee---ccChh-hHHHHHhcCCC----EEecccccchhhhHHHHHHHHcceEEEecccC
Q 043168 333 VQKWAPQVE---ILSHKSISAFLS---HCGWN-SVLEALSHGVP----IIGWPLAAEQFYNSKLLEEVIGVCVEVARGMN 401 (473)
Q Consensus 333 ~~~~~p~~~---lL~~~~~~~~I~---HgG~g-s~~eal~~GvP----~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~ 401 (473)
+..++++.+ +++.++ +||. +-|+| ++.||+++|+| +|+--..+ .+.. . .-|+.+++
T Consensus 345 ~~g~v~~~el~~~y~~aD--v~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G----~~~~---~-~~g~lv~p--- 411 (460)
T cd03788 345 LYRSLPREELAALYRAAD--VALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAG----AAEE---L-SGALLVNP--- 411 (460)
T ss_pred EeCCCCHHHHHHHHHhcc--EEEeCccccccCcccceeEEEecCCCceEEEecccc----chhh---c-CCCEEECC---
Confidence 345677655 466666 4552 45655 66899999999 54432221 1110 1 34556554
Q ss_pred CccCHHHHHHHHHHHHcCC
Q 043168 402 CEVSKENLSAKFELVMNET 420 (473)
Q Consensus 402 ~~~~~~~l~~ai~~~l~~~ 420 (473)
.+.+.++++|.++|+++
T Consensus 412 --~d~~~la~ai~~~l~~~ 428 (460)
T cd03788 412 --YDIDEVADAIHRALTMP 428 (460)
T ss_pred --CCHHHHHHHHHHHHcCC
Confidence 58999999999999977
No 164
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=78.69 E-value=12 Score=33.71 Aligned_cols=37 Identities=8% Similarity=0.098 Sum_probs=33.0
Q ss_pred eEEEEcCC--CccCHHHHHHHHHHHHhCCCcEEEEEcCCc
Q 043168 7 NIVMFPLM--AQGHIIPFLALALHLENTNRYTITFVNTPS 44 (473)
Q Consensus 7 ~Il~~~~~--~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~ 44 (473)
+|++++.+ +-|..+-...|+-+|+. +|+.|.++-..-
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~-~GkKv~liD~Di 41 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQ-LGKKVVLIDFDI 41 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHH-cCCeEEEEecCc
Confidence 78888875 89999999999999999 999999998654
No 165
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=78.41 E-value=15 Score=40.37 Aligned_cols=106 Identities=12% Similarity=0.135 Sum_probs=64.9
Q ss_pred ccCh---HHhhcccccceeee---ccChh-hHHHHHhcCCC---EEecc-cccchhhhHHHHHHHHc-ceEEEecccCCc
Q 043168 336 WAPQ---VEILSHKSISAFLS---HCGWN-SVLEALSHGVP---IIGWP-LAAEQFYNSKLLEEVIG-VCVEVARGMNCE 403 (473)
Q Consensus 336 ~~p~---~~lL~~~~~~~~I~---HgG~g-s~~eal~~GvP---~i~~P-~~~DQ~~~a~~v~~~lG-~G~~l~~~~~~~ 403 (473)
++|. .++++.+++ |+. .-|+| +..|++++|+| ++++. +.+ .+. .+| -|+.+++
T Consensus 363 ~v~~~el~aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~G----~~~----~l~~~allVnP----- 427 (797)
T PLN03063 363 SVDFNYLCALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFAG----AGQ----SLGAGALLVNP----- 427 (797)
T ss_pred CCCHHHHHHHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEeeCCcC----chh----hhcCCeEEECC-----
Confidence 4554 356666664 543 44777 56699999999 34443 322 222 124 5677765
Q ss_pred cCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHhhh
Q 043168 404 VSKENLSAKFELVMNETEKGMDLRKKASEVEMIIKNAVRNEEKFKGSSVKAMEQFLDAALMMKK 467 (473)
Q Consensus 404 ~~~~~l~~ai~~~l~~~~~~~~~~~~a~~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~ 467 (473)
.+.+.++++|.++|+.+.. ..+++.+++.+.+++ -+...-++.+++.+.....
T Consensus 428 ~D~~~lA~AI~~aL~m~~~--er~~r~~~~~~~v~~---------~~~~~Wa~~fl~~l~~~~~ 480 (797)
T PLN03063 428 WNITEVSSAIKEALNMSDE--ERETRHRHNFQYVKT---------HSAQKWADDFMSELNDIIV 480 (797)
T ss_pred CCHHHHHHHHHHHHhCCHH--HHHHHHHHHHHhhhh---------CCHHHHHHHHHHHHHHHhh
Confidence 6999999999999995411 344455555555542 2245667778887765443
No 166
>PRK06849 hypothetical protein; Provisional
Probab=78.40 E-value=11 Score=37.64 Aligned_cols=37 Identities=19% Similarity=0.177 Sum_probs=28.6
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcc
Q 043168 4 RKENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSN 45 (473)
Q Consensus 4 ~~~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~ 45 (473)
.+++||+..... .-.+.+|+.|.+ .||+|+.+.....
T Consensus 3 ~~~~VLI~G~~~----~~~l~iar~l~~-~G~~Vi~~d~~~~ 39 (389)
T PRK06849 3 TKKTVLITGARA----PAALELARLFHN-AGHTVILADSLKY 39 (389)
T ss_pred CCCEEEEeCCCc----HHHHHHHHHHHH-CCCEEEEEeCCch
Confidence 466888875332 358999999999 9999999986643
No 167
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=77.26 E-value=3.6 Score=33.75 Aligned_cols=44 Identities=14% Similarity=0.095 Sum_probs=36.7
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhh
Q 043168 6 ENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (473)
Q Consensus 6 ~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~~ 51 (473)
+||++...|+.+=+. ...+.++|++ +|++|.++.++...+.+..
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~-~g~~v~vv~S~~A~~~~~~ 44 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKR-AGWEVRVVLSPSAERFVTP 44 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHT-TTSEEEEEESHHHHHHSHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhh-CCCEEEEEECCcHHHHhhh
Confidence 488888888766666 9999999999 9999999999988887776
No 168
>PLN02939 transferase, transferring glycosyl groups
Probab=77.20 E-value=1e+02 Score=34.50 Aligned_cols=83 Identities=11% Similarity=0.113 Sum_probs=51.0
Q ss_pred CCCeEEecccChH---Hhhcccccceeeecc---C-hhhHHHHHhcCCCEEeccccc--chhhh--HHHH-HHHHcceEE
Q 043168 328 GQGLVVQKWAPQV---EILSHKSISAFLSHC---G-WNSVLEALSHGVPIIGWPLAA--EQFYN--SKLL-EEVIGVCVE 395 (473)
Q Consensus 328 ~~~v~~~~~~p~~---~lL~~~~~~~~I~Hg---G-~gs~~eal~~GvP~i~~P~~~--DQ~~~--a~~v-~~~lG~G~~ 395 (473)
..+|.+..+.+.. .+++.++ +||.-. | -.+.+||+++|+|.|+....+ |.... ...+ ... +-|..
T Consensus 836 ~drV~FlG~~de~lah~IYAaAD--IFLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg-~NGfL 912 (977)
T PLN02939 836 NNNIRLILKYDEALSHSIYAASD--MFIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVEL-RNGFT 912 (977)
T ss_pred CCeEEEEeccCHHHHHHHHHhCC--EEEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCC-CceEE
Confidence 3467777777764 4777766 576532 2 237899999999999875432 21110 0001 112 45666
Q ss_pred EecccCCccCHHHHHHHHHHHHc
Q 043168 396 VARGMNCEVSKENLSAKFELVMN 418 (473)
Q Consensus 396 l~~~~~~~~~~~~l~~ai~~~l~ 418 (473)
... .+++.+.+++.+++.
T Consensus 913 f~~-----~D~eaLa~AL~rAL~ 930 (977)
T PLN02939 913 FLT-----PDEQGLNSALERAFN 930 (977)
T ss_pred ecC-----CCHHHHHHHHHHHHH
Confidence 554 488889998888774
No 169
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=76.95 E-value=30 Score=32.38 Aligned_cols=44 Identities=25% Similarity=0.327 Sum_probs=33.7
Q ss_pred CCeEEecccChHHhhcccccceeeeccChhhHHHHHhcCCCEEeccc
Q 043168 329 QGLVVQKWAPQVEILSHKSISAFLSHCGWNSVLEALSHGVPIIGWPL 375 (473)
Q Consensus 329 ~~v~~~~~~p~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~i~~P~ 375 (473)
..+.+.+-++-.+++.+++ ++||-.+ ++-.||+.+|+|++++..
T Consensus 183 ~~~~~~~~~~~~~Ll~~s~--~VvtinS-tvGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 183 NVVIIDDDVNLYELLEQSD--AVVTINS-TVGLEALLHGKPVIVFGR 226 (269)
T ss_pred CeEEECCCCCHHHHHHhCC--EEEEECC-HHHHHHHHcCCceEEecC
Confidence 3444556678889999977 6777654 477899999999999853
No 170
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=76.94 E-value=10 Score=35.12 Aligned_cols=89 Identities=13% Similarity=0.042 Sum_probs=55.5
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhhcCCCCCCceEEeccCCCCCCCCCCCCCCCCCCCC
Q 043168 6 ENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLPF 85 (473)
Q Consensus 6 ~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~ip~~~~~~~l~~~~~~~~~~~~ 85 (473)
.+|+++..-+-|+ .||+.|.+ +|+.|++.+...... ... .++..+.= ++
T Consensus 3 ~~IlvlgGT~egr-----~la~~L~~-~g~~v~~Svat~~g~-~~~-----~~~~v~~G-------~l------------ 51 (248)
T PRK08057 3 PRILLLGGTSEAR-----ALARALAA-AGVDIVLSLAGRTGG-PAD-----LPGPVRVG-------GF------------ 51 (248)
T ss_pred ceEEEEechHHHH-----HHHHHHHh-CCCeEEEEEccCCCC-ccc-----CCceEEEC-------CC------------
Confidence 4888888766665 78999999 999877665443222 111 11111100 00
Q ss_pred CCchHHHHHHhhhhHHHHHHHhhhhhccCCCCCeEEEeCCCcch-------HHHHHHHhCCcEEEE
Q 043168 86 HLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAW-------SAEIAQEYGIFNALF 144 (473)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~~~-------~~~~A~~~giP~v~~ 144 (473)
.-.+.+.+++++. ++++|| |...++ +..+|+++|||++.+
T Consensus 52 -----------~~~~~l~~~l~~~-------~i~~VI-DATHPfA~~is~~a~~ac~~~~ipyiR~ 98 (248)
T PRK08057 52 -----------GGAEGLAAYLREE-------GIDLVI-DATHPYAAQISANAAAACRALGIPYLRL 98 (248)
T ss_pred -----------CCHHHHHHHHHHC-------CCCEEE-ECCCccHHHHHHHHHHHHHHhCCcEEEE
Confidence 0234567788888 899876 443443 346899999999998
No 171
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=75.94 E-value=15 Score=28.59 Aligned_cols=86 Identities=12% Similarity=0.048 Sum_probs=51.0
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhC-CCcEEEEEcCCcchhhhhhcCCCCCCceEEeccCCCCCCCCCCCCCCCCCCC
Q 043168 6 ENIVMFPLMAQGHIIPFLALALHLENT-NRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLP 84 (473)
Q Consensus 6 ~~Il~~~~~~~GHv~P~l~LA~~L~~~-rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~ip~~~~~~~l~~~~~~~~~~~ 84 (473)
+|||++..+++-| +||..|.++ +..+|.++-.......+. +...+.
T Consensus 1 MkVLviGsGgREH-----Aia~~l~~s~~v~~v~~aPGN~G~~~~~---------~~~~~~------------------- 47 (100)
T PF02844_consen 1 MKVLVIGSGGREH-----AIAWKLSQSPSVEEVYVAPGNPGTAELG---------KNVPID------------------- 47 (100)
T ss_dssp EEEEEEESSHHHH-----HHHHHHTTCTTEEEEEEEE--TTGGGTS---------EEE-S--------------------
T ss_pred CEEEEECCCHHHH-----HHHHHHhcCCCCCEEEEeCCCHHHHhhc---------eecCCC-------------------
Confidence 4899999999999 689999884 333444333221111111 111110
Q ss_pred CCCchHHHHHHhhhhHHHHHHHhhhhhccCCCCCeEEEeCCCcch---HHHHHHHhCCcEE
Q 043168 85 FHLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAW---SAEIAQEYGIFNA 142 (473)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~~~---~~~~A~~~giP~v 142 (473)
..-.+.+.++.++. ++|+||..+-.+. ..+..+..|||++
T Consensus 48 -----------~~d~~~l~~~a~~~-------~idlvvvGPE~pL~~Gl~D~l~~~gi~vf 90 (100)
T PF02844_consen 48 -----------ITDPEELADFAKEN-------KIDLVVVGPEAPLVAGLADALRAAGIPVF 90 (100)
T ss_dssp -----------TT-HHHHHHHHHHT-------TESEEEESSHHHHHTTHHHHHHHTT-CEE
T ss_pred -----------CCCHHHHHHHHHHc-------CCCEEEECChHHHHHHHHHHHHHCCCcEE
Confidence 01224556777788 9999999987763 3467778899975
No 172
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=74.54 E-value=44 Score=29.89 Aligned_cols=149 Identities=17% Similarity=0.158 Sum_probs=77.4
Q ss_pred CceEEEEecCcccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCccchhcccCCchhHHHhhccCCCCeEEecccChHH
Q 043168 262 NSVIYVSFGSQNTIAASQMMQLAMALEACGKNFIWVVKPPLGFDLNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVE 341 (473)
Q Consensus 262 ~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 341 (473)
+.++.|+.|.++ ..-+..|.+.|..+.++-. . +.+.+.+-.. ..++....--.+..
T Consensus 10 k~vlVvGgG~va-------~rk~~~Ll~~ga~VtVvsp-~--------------~~~~l~~l~~--~~~i~~~~~~~~~~ 65 (205)
T TIGR01470 10 RAVLVVGGGDVA-------LRKARLLLKAGAQLRVIAE-E--------------LESELTLLAE--QGGITWLARCFDAD 65 (205)
T ss_pred CeEEEECcCHHH-------HHHHHHHHHCCCEEEEEcC-C--------------CCHHHHHHHH--cCCEEEEeCCCCHH
Confidence 558888887776 3334556667777665533 2 1122222111 22444322222344
Q ss_pred hhcccccceeeeccChhhH-----HHHHhcCCCEEec--ccccchhhhHHHHHHHHcceEEEecccCCccCHHHHHHHHH
Q 043168 342 ILSHKSISAFLSHCGWNSV-----LEALSHGVPIIGW--PLAAEQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAKFE 414 (473)
Q Consensus 342 lL~~~~~~~~I~HgG~gs~-----~eal~~GvP~i~~--P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ai~ 414 (473)
.+..++ ++|..-|...+ .+|-..|+|+-++ |-..|= ..-..+.+- ++-+.+..+.....-+..|++.|.
T Consensus 66 dl~~~~--lVi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~f-~~pa~~~~g-~l~iaisT~G~sP~la~~lr~~ie 141 (205)
T TIGR01470 66 ILEGAF--LVIAATDDEELNRRVAHAARARGVPVNVVDDPELCSF-IFPSIVDRS-PVVVAISSGGAAPVLARLLRERIE 141 (205)
T ss_pred HhCCcE--EEEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCeE-EEeeEEEcC-CEEEEEECCCCCcHHHHHHHHHHH
Confidence 466544 68887777633 3455678888443 222221 111122222 344444442223344567888888
Q ss_pred HHHcCChhhHHHHHHHHHHHHHHHHh
Q 043168 415 LVMNETEKGMDLRKKASEVEMIIKNA 440 (473)
Q Consensus 415 ~~l~~~~~~~~~~~~a~~~~~~~~~a 440 (473)
+++.+. ...|.+-..+++..+++.
T Consensus 142 ~~l~~~--~~~~~~~~~~~R~~~k~~ 165 (205)
T TIGR01470 142 TLLPPS--LGDLATLAATWRDAVKKR 165 (205)
T ss_pred Hhcchh--HHHHHHHHHHHHHHHHhh
Confidence 888544 235667777777777654
No 173
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=74.38 E-value=45 Score=28.57 Aligned_cols=27 Identities=15% Similarity=0.320 Sum_probs=22.1
Q ss_pred cceeeeccChh------hHHHHHhcCCCEEecc
Q 043168 348 ISAFLSHCGWN------SVLEALSHGVPIIGWP 374 (473)
Q Consensus 348 ~~~~I~HgG~g------s~~eal~~GvP~i~~P 374 (473)
..++++|+|-| .+.+|...++|+|++.
T Consensus 64 ~~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~ 96 (164)
T cd07039 64 LGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIA 96 (164)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 45678888855 6779999999999985
No 174
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=74.27 E-value=12 Score=38.97 Aligned_cols=78 Identities=13% Similarity=-0.002 Sum_probs=46.9
Q ss_pred ChHHhhcccccceeee---ccChh-hHHHHHhcCCCEEeccccc-chhhhHHHHHHHHc--ceEEEecc--cCCccCHHH
Q 043168 338 PQVEILSHKSISAFLS---HCGWN-SVLEALSHGVPIIGWPLAA-EQFYNSKLLEEVIG--VCVEVARG--MNCEVSKEN 408 (473)
Q Consensus 338 p~~~lL~~~~~~~~I~---HgG~g-s~~eal~~GvP~i~~P~~~-DQ~~~a~~v~~~lG--~G~~l~~~--~~~~~~~~~ 408 (473)
+..++++.++ ++|. +=|+| +..||+++|+|+|.....+ .. ++..+... + .|+.+... .+-..+.+.
T Consensus 467 ~y~E~~~g~d--l~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~--~v~E~v~~-~~~~gi~V~~r~~~~~~e~v~~ 541 (590)
T cd03793 467 DYEEFVRGCH--LGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGC--FMEEHIED-PESYGIYIVDRRFKSPDESVQQ 541 (590)
T ss_pred chHHHhhhce--EEEeccccCCCCcHHHHHHHcCCCEEEccCcchhh--hhHHHhcc-CCCceEEEecCCccchHHHHHH
Confidence 3566676666 5555 34554 8899999999999976532 11 11222211 2 46666531 112345688
Q ss_pred HHHHHHHHHcCC
Q 043168 409 LSAKFELVMNET 420 (473)
Q Consensus 409 l~~ai~~~l~~~ 420 (473)
+++++.+++..+
T Consensus 542 La~~m~~~~~~~ 553 (590)
T cd03793 542 LTQYMYEFCQLS 553 (590)
T ss_pred HHHHHHHHhCCc
Confidence 888898888554
No 175
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=72.32 E-value=6.7 Score=31.64 Aligned_cols=38 Identities=11% Similarity=0.016 Sum_probs=26.0
Q ss_pred ceEEEEcCCCcc---CHHHHHHHHHHHHhCCCcEEEEEcCCc
Q 043168 6 ENIVMFPLMAQG---HIIPFLALALHLENTNRYTITFVNTPS 44 (473)
Q Consensus 6 ~~Il~~~~~~~G---Hv~P~l~LA~~L~~~rGh~Vt~~~~~~ 44 (473)
+||+|+.-|-.+ .-.-.++++.+-.+ |||+|.++....
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~-RGhev~~~~~~d 41 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQR-RGHEVFYYEPGD 41 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHH-TT-EEEEE-GGG
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHH-CCCEEEEEEcCc
Confidence 378888776444 33567899999999 999999999664
No 176
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=72.08 E-value=25 Score=33.43 Aligned_cols=53 Identities=13% Similarity=0.220 Sum_probs=37.3
Q ss_pred cceeeeccChhhHHHHHhc----CCCEEecccccchhhhHHHHHHHHcceEEEecccCCccCHHHHHHHHHHHHcCC
Q 043168 348 ISAFLSHCGWNSVLEALSH----GVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAKFELVMNET 420 (473)
Q Consensus 348 ~~~~I~HgG~gs~~eal~~----GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ai~~~l~~~ 420 (473)
++++|+-||-||+.+++.. ++|++.+-.. .+|.- ...+.+++.+++.++++++
T Consensus 64 ~d~vi~~GGDGt~l~~~~~~~~~~~pilGIn~G--------------~lGFL------~~~~~~~~~~~l~~~~~g~ 120 (291)
T PRK02155 64 ADLAVVLGGDGTMLGIGRQLAPYGVPLIGINHG--------------RLGFI------TDIPLDDMQETLPPMLAGN 120 (291)
T ss_pred CCEEEEECCcHHHHHHHHHhcCCCCCEEEEcCC--------------Ccccc------ccCCHHHHHHHHHHHHcCC
Confidence 4589999999999999773 7888887310 12222 2356778888888887665
No 177
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=71.98 E-value=26 Score=30.61 Aligned_cols=106 Identities=15% Similarity=0.072 Sum_probs=56.4
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCcE--EEEEcCCcchhh-hhhcCCCCCCceEEeccCCCCCCCCCCCCCCCCC
Q 043168 6 ENIVMFPLMAQGHIIPFLALALHLENTNRYT--ITFVNTPSNLKK-LKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDS 82 (473)
Q Consensus 6 ~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~--Vt~~~~~~~~~~-v~~~~~~~~~~~~~~ip~~~~~~~l~~~~~~~~~ 82 (473)
+||+|+..++. .-+..+.++|.+ .+|. +..+.+...... ...... .++....+... .
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~-~~~~~~iv~Vit~~~~~~~~~~~~~--~~~~~~~~~~~----~---------- 60 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKA-RGHNVEIVLVITNPDKPRGRSRAIK--NGIPAQVADEK----N---------- 60 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHT-TSSEEEEEEEEESSTTTHHHHHHHH--TTHHEEEHHGG----G----------
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHh-CCCCceEEEEecccccccccccccc--CCCCEEecccc----C----------
Confidence 48988866555 446667789999 8997 444443332222 111110 12222222100 0
Q ss_pred CCCCCchHHHHHHhhhhHHHHHHHhhhhhccCCCCCeEEEeCCCcc-hHHHHHHHhCCcEEEEccc
Q 043168 83 LPFHLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFA-WSAEIAQEYGIFNALFVGG 147 (473)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~~-~~~~~A~~~giP~v~~~~~ 147 (473)
+.......+.+.+++++. +||++|+-.+.. .-..+-..+...++-++++
T Consensus 61 ---------~~~~~~~~~~~~~~l~~~-------~~Dl~v~~~~~~il~~~~l~~~~~~~iNiHps 110 (181)
T PF00551_consen 61 ---------FQPRSENDEELLELLESL-------NPDLIVVAGYGRILPKEFLSIPPYGIINIHPS 110 (181)
T ss_dssp ---------SSSHHHHHHHHHHHHHHT-------T-SEEEESS-SS---HHHHHHSTTSEEEEESS
T ss_pred ---------CCchHhhhhHHHHHHHhh-------ccceeehhhhHHHhhhhhhhcccccEEEEeec
Confidence 000123345567888899 999998876543 4445667777788887543
No 178
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=71.96 E-value=1.3e+02 Score=31.09 Aligned_cols=109 Identities=10% Similarity=0.082 Sum_probs=70.1
Q ss_pred eEEecccChHH---hhcccccceeee--ccChhhHH-HHHhcCC----CEEecccccchhhhHHHHHHHHcceEEEeccc
Q 043168 331 LVVQKWAPQVE---ILSHKSISAFLS--HCGWNSVL-EALSHGV----PIIGWPLAAEQFYNSKLLEEVIGVCVEVARGM 400 (473)
Q Consensus 331 v~~~~~~p~~~---lL~~~~~~~~I~--HgG~gs~~-eal~~Gv----P~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~ 400 (473)
+.+...+|+.+ +++.++| ++|| .-|+|-+. |.++++. |+|.--+.+ |. +.|.-++.+++
T Consensus 364 ~~~~~~v~~~el~alYr~ADV-~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaG-----aa---~~l~~AllVNP-- 432 (487)
T TIGR02398 364 QFFTRSLPYEEVSAWFAMADV-MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAG-----AA---VELKGALLTNP-- 432 (487)
T ss_pred EEEcCCCCHHHHHHHHHhCCE-EEECccccccCcchhhHHhhhcCCCCCEEEecccc-----ch---hhcCCCEEECC--
Confidence 45667788765 5556776 5555 46999665 9999987 555443221 11 23355677765
Q ss_pred CCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHH
Q 043168 401 NCEVSKENLSAKFELVMNETEKGMDLRKKASEVEMIIKNAVRNEEKFKGSSVKAMEQFLDAALM 464 (473)
Q Consensus 401 ~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~ 464 (473)
.+.++++++|.++|+.+ .++-++|.+++.+.++. .. ...=.+.++..+..
T Consensus 433 ---~d~~~~A~ai~~AL~m~--~~Er~~R~~~l~~~v~~--------~d-~~~W~~~fl~~l~~ 482 (487)
T TIGR02398 433 ---YDPVRMDETIYVALAMP--KAEQQARMREMFDAVNY--------YD-VQRWADEFLAAVSP 482 (487)
T ss_pred ---CCHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHhh--------CC-HHHHHHHHHHHhhh
Confidence 79999999999999998 22445555555555542 22 45557777777654
No 179
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=71.89 E-value=46 Score=29.35 Aligned_cols=100 Identities=8% Similarity=0.005 Sum_probs=60.9
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcc-----hhhhhhcCCCCCCceEEeccCCCCCCCCCCCCCC
Q 043168 5 KENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSN-----LKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTEN 79 (473)
Q Consensus 5 ~~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~-----~~~v~~~~~~~~~~~~~~ip~~~~~~~l~~~~~~ 79 (473)
+-.|.+++..+.|-....+.+|-+... +|++|.++-.=.. ...+-+.. +++++..... ++. +..
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g-~G~~V~ivQFlKg~~~~GE~~~l~~l---~~v~~~~~g~-----~~~--~~~ 90 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVG-HGKKVGVVQFIKGAWSTGERNLLEFG---GGVEFHVMGT-----GFT--WET 90 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHH-CCCeEEEEEEecCCCccCHHHHHhcC---CCcEEEECCC-----CCc--ccC
Confidence 347899999999999999999999999 9999998873221 11111111 3556654331 111 110
Q ss_pred CCCCCCCCchHHHHHHhhhhHHHHHHHhhhhhccCCCCCeEEEeCCCcc
Q 043168 80 SDSLPFHLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFA 128 (473)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~~ 128 (473)
. ....-...........++.+.+. .+|+||.|-...
T Consensus 91 --~----~~~e~~~~~~~~~~~a~~~l~~~-------~ydlvVLDEi~~ 126 (191)
T PRK05986 91 --Q----DRERDIAAAREGWEEAKRMLADE-------SYDLVVLDELTY 126 (191)
T ss_pred --C----CcHHHHHHHHHHHHHHHHHHhCC-------CCCEEEEehhhH
Confidence 0 11222333344455556666666 899999998554
No 180
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=71.83 E-value=67 Score=28.61 Aligned_cols=147 Identities=12% Similarity=0.066 Sum_probs=77.3
Q ss_pred CCceEEEEecCcccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCccchhcccCCchhHHHhhccCCCCeEEecccChH
Q 043168 261 CNSVIYVSFGSQNTIAASQMMQLAMALEACGKNFIWVVKPPLGFDLNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQV 340 (473)
Q Consensus 261 ~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 340 (473)
.+.++.|+.|.++ ...++.|.+.|..+.++ ... +...+.+... ...+.........
T Consensus 10 ~k~vLVIGgG~va-------~~ka~~Ll~~ga~V~VI-s~~--------------~~~~l~~l~~--~~~i~~~~~~~~~ 65 (202)
T PRK06718 10 NKRVVIVGGGKVA-------GRRAITLLKYGAHIVVI-SPE--------------LTENLVKLVE--EGKIRWKQKEFEP 65 (202)
T ss_pred CCEEEEECCCHHH-------HHHHHHHHHCCCeEEEE-cCC--------------CCHHHHHHHh--CCCEEEEecCCCh
Confidence 3558888887776 44555666667666554 322 2222222221 2234443333444
Q ss_pred HhhcccccceeeeccChhhHHHHHh----cCCCEEecccccchhhhH-----HHHHHHHcceEEEecccCCccCHHHHHH
Q 043168 341 EILSHKSISAFLSHCGWNSVLEALS----HGVPIIGWPLAAEQFYNS-----KLLEEVIGVCVEVARGMNCEVSKENLSA 411 (473)
Q Consensus 341 ~lL~~~~~~~~I~HgG~gs~~eal~----~GvP~i~~P~~~DQ~~~a-----~~v~~~lG~G~~l~~~~~~~~~~~~l~~ 411 (473)
..+..++ ++|.--+.-.+.+.++ .++++-++ |.+..+ ..+.+- ++-+.+..++....-+..|++
T Consensus 66 ~~l~~ad--lViaaT~d~elN~~i~~~a~~~~lvn~~----d~~~~~~f~~Pa~~~~g-~l~iaIsT~G~sP~la~~lr~ 138 (202)
T PRK06718 66 SDIVDAF--LVIAATNDPRVNEQVKEDLPENALFNVI----TDAESGNVVFPSALHRG-KLTISVSTDGASPKLAKKIRD 138 (202)
T ss_pred hhcCCce--EEEEcCCCHHHHHHHHHHHHhCCcEEEC----CCCccCeEEEeeEEEcC-CeEEEEECCCCChHHHHHHHH
Confidence 5566655 6777766665555443 56665443 332222 122222 344444442222334466777
Q ss_pred HHHHHHcCChhhHHHHHHHHHHHHHHHHh
Q 043168 412 KFELVMNETEKGMDLRKKASEVEMIIKNA 440 (473)
Q Consensus 412 ai~~~l~~~~~~~~~~~~a~~~~~~~~~a 440 (473)
.|..++.. ....+-+.+.+++..+++.
T Consensus 139 ~ie~~~~~--~~~~~~~~~~~~R~~~k~~ 165 (202)
T PRK06718 139 ELEALYDE--SYESYIDFLYECRQKIKEL 165 (202)
T ss_pred HHHHHcch--hHHHHHHHHHHHHHHHHHh
Confidence 77777633 3446777888888888754
No 181
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=71.62 E-value=14 Score=34.28 Aligned_cols=91 Identities=20% Similarity=0.243 Sum_probs=53.6
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcC-CcchhhhhhcCCCCCCceEEeccCCCCCCCCCCCCCCCCCCC
Q 043168 6 ENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNT-PSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLP 84 (473)
Q Consensus 6 ~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~-~~~~~~v~~~~~~~~~~~~~~ip~~~~~~~l~~~~~~~~~~~ 84 (473)
+||+++..-+-|+ .||+.|.+ +|+ |++-+. ........... +....+. . ++
T Consensus 1 m~ILvlgGTtE~r-----~la~~L~~-~g~-v~~sv~t~~g~~~~~~~~---~~~~v~~-G------~l----------- 52 (249)
T PF02571_consen 1 MKILVLGGTTEGR-----KLAERLAE-AGY-VIVSVATSYGGELLKPEL---PGLEVRV-G------RL----------- 52 (249)
T ss_pred CEEEEEechHHHH-----HHHHHHHh-cCC-EEEEEEhhhhHhhhcccc---CCceEEE-C------CC-----------
Confidence 3788887666665 79999999 998 554433 32222222110 0111110 0 00
Q ss_pred CCCchHHHHHHhhhhHHHHHHHhhhhhccCCCCCeEEEeCCCcch-------HHHHHHHhCCcEEEE
Q 043168 85 FHLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAW-------SAEIAQEYGIFNALF 144 (473)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~~~-------~~~~A~~~giP~v~~ 144 (473)
.-.+.+.+++++. ++++|| |...++ +..+|+.+|||++.+
T Consensus 53 ------------g~~~~l~~~l~~~-------~i~~vI-DATHPfA~~is~na~~a~~~~~ipylR~ 99 (249)
T PF02571_consen 53 ------------GDEEGLAEFLREN-------GIDAVI-DATHPFAAEISQNAIEACRELGIPYLRF 99 (249)
T ss_pred ------------CCHHHHHHHHHhC-------CCcEEE-ECCCchHHHHHHHHHHHHhhcCcceEEE
Confidence 0234567888888 899887 333333 346899999999998
No 182
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=71.37 E-value=18 Score=31.78 Aligned_cols=98 Identities=19% Similarity=0.219 Sum_probs=50.3
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhC-CCcEEEEEcC-CcchhhhhhcCCCCCCceEEeccCCCCCCCCCCCCCCCCCCCC
Q 043168 8 IVMFPLMAQGHIIPFLALALHLENT-NRYTITFVNT-PSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLPF 85 (473)
Q Consensus 8 Il~~~~~~~GHv~P~l~LA~~L~~~-rGh~Vt~~~~-~~~~~~v~~~~~~~~~~~~~~ip~~~~~~~l~~~~~~~~~~~~ 85 (473)
|-|. ..+.|-+.-..+|+++|.+. .|++|.+-++ +...+.+.+... +.+...-+|++
T Consensus 24 iWiH-a~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~--~~v~~~~~P~D------------------ 82 (186)
T PF04413_consen 24 IWIH-AASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLP--DRVDVQYLPLD------------------ 82 (186)
T ss_dssp EEEE--SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-G--GG-SEEE---S------------------
T ss_pred EEEE-ECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCC--CCeEEEEeCcc------------------
Confidence 4444 46789999999999999983 3898887775 444444544221 12222223311
Q ss_pred CCchHHHHHHhhhhHHHHHHHhhhhhccCCCCCeEEEeCCCc-ch-HHHHHHHhCCcEEEEc
Q 043168 86 HLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFF-AW-SAEIAQEYGIFNALFV 145 (473)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~-~~-~~~~A~~~giP~v~~~ 145 (473)
.....+++++.+ +||++|.--.- +. -+..|++.|||.+.+.
T Consensus 83 ------------~~~~~~rfl~~~-------~P~~~i~~EtElWPnll~~a~~~~ip~~LvN 125 (186)
T PF04413_consen 83 ------------FPWAVRRFLDHW-------RPDLLIWVETELWPNLLREAKRRGIPVVLVN 125 (186)
T ss_dssp ------------SHHHHHHHHHHH---------SEEEEES----HHHHHH-----S-EEEEE
T ss_pred ------------CHHHHHHHHHHh-------CCCEEEEEccccCHHHHHHHhhcCCCEEEEe
Confidence 122457888999 99977644334 33 3458888999998873
No 183
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=70.17 E-value=35 Score=27.07 Aligned_cols=85 Identities=16% Similarity=0.075 Sum_probs=53.5
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhhcCCCCCCceEEeccCCCCCCCCCCCCCCCCCCCCCCchHHHHHHhh
Q 043168 18 HIIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLPFHLFPNFFESTLS 97 (473)
Q Consensus 18 Hv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~ip~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 97 (473)
+=.-++.+|+.|.. .||++ ++| +...+.+... |+.+..+-. .+.+
T Consensus 10 ~K~~~~~~a~~l~~-~G~~i-~AT-~gTa~~L~~~-----Gi~~~~v~~------~~~~--------------------- 54 (112)
T cd00532 10 VKAMLVDLAPKLSS-DGFPL-FAT-GGTSRVLADA-----GIPVRAVSK------RHED--------------------- 54 (112)
T ss_pred cHHHHHHHHHHHHH-CCCEE-EEC-cHHHHHHHHc-----CCceEEEEe------cCCC---------------------
Confidence 33457899999999 99998 344 5566677763 445554431 1110
Q ss_pred hhHHHHHHHhh-hhhccCCCCCeEEEeCC--Cc--------chHHHHHHHhCCcEEEE
Q 043168 98 FKPHFRKLING-LIDEQNGHKPVCIIADM--FF--------AWSAEIAQEYGIFNALF 144 (473)
Q Consensus 98 ~~~~l~~~l~~-~~~~~~~~~pDlVI~D~--~~--------~~~~~~A~~~giP~v~~ 144 (473)
-.+.+.+.+++ . ++|+||.-. .. +....+|-.++||+++-
T Consensus 55 g~~~i~~~i~~~g-------~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T~ 105 (112)
T cd00532 55 GEPTVDAAIAEKG-------KFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTTP 105 (112)
T ss_pred CCcHHHHHHhCCC-------CEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEEC
Confidence 11345666777 6 899999732 22 12345788999999864
No 184
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=70.13 E-value=47 Score=30.84 Aligned_cols=40 Identities=15% Similarity=0.061 Sum_probs=27.4
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcch
Q 043168 4 RKENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNL 46 (473)
Q Consensus 4 ~~~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~ 46 (473)
+++|||+.---+. |.--+..|+++|.+ .| +|+++.+...+
T Consensus 4 ~~M~ILltNDDGi-~a~Gi~aL~~~l~~-~g-~V~VvAP~~~~ 43 (257)
T PRK13932 4 KKPHILVCNDDGI-EGEGIHVLAASMKK-IG-RVTVVAPAEPH 43 (257)
T ss_pred CCCEEEEECCCCC-CCHHHHHHHHHHHh-CC-CEEEEcCCCCC
Confidence 3458887664333 22457788999999 88 79988866543
No 185
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=70.06 E-value=66 Score=27.13 Aligned_cols=140 Identities=19% Similarity=0.286 Sum_probs=71.5
Q ss_pred ceEEEEecCcccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCccchhcccCCchhHHHhhccCCCCeEEecccChHHh
Q 043168 263 SVIYVSFGSQNTIAASQMMQLAMALEACGKNFIWVVKPPLGFDLNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVEI 342 (473)
Q Consensus 263 ~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~l 342 (473)
|.|-|-+||.. +....+++...|+..|..+-+-+...+ ..|+.+.+-. ...
T Consensus 1 p~V~Ii~gs~S--D~~~~~~a~~~L~~~gi~~~~~V~saH------------R~p~~l~~~~-------------~~~-- 51 (150)
T PF00731_consen 1 PKVAIIMGSTS--DLPIAEEAAKTLEEFGIPYEVRVASAH------------RTPERLLEFV-------------KEY-- 51 (150)
T ss_dssp -EEEEEESSGG--GHHHHHHHHHHHHHTT-EEEEEE--TT------------TSHHHHHHHH-------------HHT--
T ss_pred CeEEEEeCCHH--HHHHHHHHHHHHHHcCCCEEEEEEecc------------CCHHHHHHHH-------------HHh--
Confidence 34677777776 677888899999998877766555432 1344333211 111
Q ss_pred hcccccceeeeccChh----hHHHHHhcCCCEEecccccchhhhHHH---HHHHH-cceEEEecccCCccCHHHHHHHHH
Q 043168 343 LSHKSISAFLSHCGWN----SVLEALSHGVPIIGWPLAAEQFYNSKL---LEEVI-GVCVEVARGMNCEVSKENLSAKFE 414 (473)
Q Consensus 343 L~~~~~~~~I~HgG~g----s~~eal~~GvP~i~~P~~~DQ~~~a~~---v~~~l-G~G~~l~~~~~~~~~~~~l~~ai~ 414 (473)
..-.++.||.=.|.. ++..++- -.|+|.+|....+.....- +.... |+++..-- .+...++..++..|-
T Consensus 52 -~~~~~~viIa~AG~~a~Lpgvva~~t-~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~-i~~~~nAA~~A~~IL 128 (150)
T PF00731_consen 52 -EARGADVIIAVAGMSAALPGVVASLT-TLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVG-INNGFNAALLAARIL 128 (150)
T ss_dssp -TTTTESEEEEEEESS--HHHHHHHHS-SS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-S-STHHHHHHHHHHHHH
T ss_pred -ccCCCEEEEEECCCcccchhhheecc-CCCEEEeecCcccccCcccHHHHHhccCCCCceEEE-ccCchHHHHHHHHHH
Confidence 111133577666643 4444444 7999999988765543332 22232 55543211 012334444444442
Q ss_pred HHHcCChhhHHHHHHHHHHHHHHHH
Q 043168 415 LVMNETEKGMDLRKKASEVEMIIKN 439 (473)
Q Consensus 415 ~~l~~~~~~~~~~~~a~~~~~~~~~ 439 (473)
-+.|+ .++++.+++++.+++
T Consensus 129 -a~~d~----~l~~kl~~~~~~~~~ 148 (150)
T PF00731_consen 129 -ALKDP----ELREKLRAYREKMKE 148 (150)
T ss_dssp -HTT-H----HHHHHHHHHHHHHHH
T ss_pred -hcCCH----HHHHHHHHHHHHHHc
Confidence 23456 788888888877763
No 186
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=69.65 E-value=39 Score=25.44 Aligned_cols=79 Identities=14% Similarity=0.130 Sum_probs=48.0
Q ss_pred HHHHHHHHHhCCCcEEEEEcCCcchhhhhhcCCCCCCceEEeccCCCCCCCCCCCCCCCCCCCCCCchHHHHHHhhhhHH
Q 043168 22 FLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLPFHLFPNFFESTLSFKPH 101 (473)
Q Consensus 22 ~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~ip~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (473)
++.+|+.|.+ .|+++ ++| +.....++. .|+.+..+.. ....+ .+.
T Consensus 2 ~~~~~~~l~~-lG~~i-~AT-~gTa~~L~~-----~Gi~~~~~~~-----ki~~~----------------------~~~ 46 (90)
T smart00851 2 LVELAKRLAE-LGFEL-VAT-GGTAKFLRE-----AGLPVKTLHP-----KVHGG----------------------ILA 46 (90)
T ss_pred HHHHHHHHHH-CCCEE-EEc-cHHHHHHHH-----CCCcceeccC-----CCCCC----------------------CHH
Confidence 4689999999 99998 455 445566766 3434321110 01000 013
Q ss_pred HHHHHhhhhhccCCCCCeEEEeCCCc---------chHHHHHHHhCCcEE
Q 043168 102 FRKLINGLIDEQNGHKPVCIIADMFF---------AWSAEIAQEYGIFNA 142 (473)
Q Consensus 102 l~~~l~~~~~~~~~~~pDlVI~D~~~---------~~~~~~A~~~giP~v 142 (473)
+.++++.. ++|+||.-... .....+|-..+||++
T Consensus 47 i~~~i~~g-------~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 47 ILDLIKNG-------EIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGA 89 (90)
T ss_pred HHHHhcCC-------CeEEEEECCCcCcceeccCcHHHHHHHHHcCCCee
Confidence 56677777 89999985431 123457889999986
No 187
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=69.62 E-value=60 Score=30.78 Aligned_cols=123 Identities=15% Similarity=0.095 Sum_probs=67.7
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhhcCCCCCCceEEeccCCCCCCCCCCCCCCCCCCC
Q 043168 5 KENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLP 84 (473)
Q Consensus 5 ~~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~ip~~~~~~~l~~~~~~~~~~~ 84 (473)
..+|-+...|+.|-=+=.=.|...|.+ +||+|-++.-++..+.--.+... ..++...+.. .+.-+ ....+
T Consensus 51 a~viGITG~PGaGKSTli~~L~~~l~~-~G~rVaVlAVDPSSp~TGGsiLG-DRiRM~~~~~------~~~vF--iRs~~ 120 (323)
T COG1703 51 AHVIGITGVPGAGKSTLIEALGRELRE-RGHRVAVLAVDPSSPFTGGSILG-DRIRMQRLAV------DPGVF--IRSSP 120 (323)
T ss_pred CcEEEecCCCCCchHHHHHHHHHHHHH-CCcEEEEEEECCCCCCCCccccc-cHhhHHhhcc------CCCeE--EeecC
Confidence 346788888999998888999999999 99999998866444433332210 1122211110 00000 00000
Q ss_pred CCCchHHHHHHhhhhHHHHHHHhhhhhccCCCCCeEEEeCCCcch--HHHHHHHhCCcEEEEccc
Q 043168 85 FHLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAW--SAEIAQEYGIFNALFVGG 147 (473)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~~~--~~~~A~~~giP~v~~~~~ 147 (473)
. ....-.+.........+++.. .+|+||....-.. =..+++...+-.+...+.
T Consensus 121 s---rG~lGGlS~at~~~i~~ldAa-------G~DvIIVETVGvGQsev~I~~~aDt~~~v~~pg 175 (323)
T COG1703 121 S---RGTLGGLSRATREAIKLLDAA-------GYDVIIVETVGVGQSEVDIANMADTFLVVMIPG 175 (323)
T ss_pred C---CccchhhhHHHHHHHHHHHhc-------CCCEEEEEecCCCcchhHHhhhcceEEEEecCC
Confidence 0 011111222233445666666 9999999964442 245677777766665433
No 188
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=68.77 E-value=17 Score=33.53 Aligned_cols=30 Identities=23% Similarity=0.144 Sum_probs=21.1
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEcCCcchhhh
Q 043168 18 HIIPFLALALHLENTNRYTITFVNTPSNLKKL 49 (473)
Q Consensus 18 Hv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v 49 (473)
|.--+.+|+++|+ .+++|+++.+...+.-.
T Consensus 12 ~a~Gi~aL~~al~--~~~dV~VVAP~~~qSg~ 41 (252)
T COG0496 12 HAPGIRALARALR--EGADVTVVAPDREQSGA 41 (252)
T ss_pred CCHHHHHHHHHHh--hCCCEEEEccCCCCccc
Confidence 3344566777777 49999999977665444
No 189
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=68.58 E-value=13 Score=33.92 Aligned_cols=42 Identities=10% Similarity=0.013 Sum_probs=33.9
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhh
Q 043168 7 NIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKL 49 (473)
Q Consensus 7 ~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v 49 (473)
-+++...++.|...=..+++..... +|..|.|++.+.....+
T Consensus 27 ~~~i~G~~GsGKt~l~~~~~~~~~~-~g~~~~y~~~e~~~~~~ 68 (234)
T PRK06067 27 LILIEGDHGTGKSVLSQQFVYGALK-QGKKVYVITTENTSKSY 68 (234)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHh-CCCEEEEEEcCCCHHHH
Confidence 3566677899999999999888888 89999999987655443
No 190
>PRK05973 replicative DNA helicase; Provisional
Probab=68.35 E-value=19 Score=33.06 Aligned_cols=43 Identities=14% Similarity=0.131 Sum_probs=36.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhh
Q 043168 8 IVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (473)
Q Consensus 8 Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~~ 51 (473)
+++...|+.|-..=.+.++..... +|+.|.|++.+.....+..
T Consensus 67 ~LIaG~PG~GKT~lalqfa~~~a~-~Ge~vlyfSlEes~~~i~~ 109 (237)
T PRK05973 67 VLLGARPGHGKTLLGLELAVEAMK-SGRTGVFFTLEYTEQDVRD 109 (237)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHh-cCCeEEEEEEeCCHHHHHH
Confidence 566777899999999999998888 8999999998876655544
No 191
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=68.17 E-value=21 Score=38.91 Aligned_cols=115 Identities=16% Similarity=0.121 Sum_probs=65.7
Q ss_pred EEecccChHH---hhcccccceeee---ccChh-hHHHHHhcCCCEEecccccchhhhHHHHHHHHcceEEEecccCCcc
Q 043168 332 VVQKWAPQVE---ILSHKSISAFLS---HCGWN-SVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMNCEV 404 (473)
Q Consensus 332 ~~~~~~p~~~---lL~~~~~~~~I~---HgG~g-s~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~~~ 404 (473)
+...++++.+ +++.+++ |+. .-|+| ++.|++++|+|-..+|...+--.-+..+ .-|+.+++ .
T Consensus 345 ~~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~~l----~~~llv~P-----~ 413 (726)
T PRK14501 345 YFYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAAEL----AEALLVNP-----N 413 (726)
T ss_pred EEeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecccchhHHh----CcCeEECC-----C
Confidence 3446777754 5566664 443 23655 6779999977522222212111112111 23666665 5
Q ss_pred CHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHhhhh
Q 043168 405 SKENLSAKFELVMNETEKGMDLRKKASEVEMIIKNAVRNEEKFKGSSVKAMEQFLDAALMMKKA 468 (473)
Q Consensus 405 ~~~~l~~ai~~~l~~~~~~~~~~~~a~~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 468 (473)
+.+.++++|.++|.++.. +.+++.+++.+.++ .-+...-++++++.+......
T Consensus 414 d~~~la~ai~~~l~~~~~--e~~~r~~~~~~~v~---------~~~~~~w~~~~l~~l~~~~~~ 466 (726)
T PRK14501 414 DIEGIAAAIKRALEMPEE--EQRERMQAMQERLR---------RYDVHKWASDFLDELREAAEK 466 (726)
T ss_pred CHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHH---------hCCHHHHHHHHHHHHHHHHhh
Confidence 899999999999987611 33444444444443 223567788888887765443
No 192
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=67.86 E-value=11 Score=35.29 Aligned_cols=53 Identities=11% Similarity=0.078 Sum_probs=36.6
Q ss_pred cceeeeccChhhHHHHHh------cCCCEEecccccchhhhHHHHHHHHcceEEEecccCCccCHHHHHHHHHHHHcCC
Q 043168 348 ISAFLSHCGWNSVLEALS------HGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAKFELVMNET 420 (473)
Q Consensus 348 ~~~~I~HgG~gs~~eal~------~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ai~~~l~~~ 420 (473)
++++|+-||=||++.|+. .++|++.+-.. .+|.- -..+.+++.+++.++++++
T Consensus 36 ~Dlvi~iGGDGT~L~a~~~~~~~~~~iPilGIN~G--------------~lGFL------~~~~~~~~~~~l~~i~~g~ 94 (265)
T PRK04885 36 PDIVISVGGDGTLLSAFHRYENQLDKVRFVGVHTG--------------HLGFY------TDWRPFEVDKLVIALAKDP 94 (265)
T ss_pred CCEEEEECCcHHHHHHHHHhcccCCCCeEEEEeCC--------------Cceec------ccCCHHHHHHHHHHHHcCC
Confidence 458999999999999976 48899988321 12211 2345667777777777654
No 193
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=67.53 E-value=13 Score=33.22 Aligned_cols=42 Identities=19% Similarity=0.112 Sum_probs=36.5
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchh
Q 043168 5 KENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLK 47 (473)
Q Consensus 5 ~~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~ 47 (473)
+.||++.+.++-.|-....-++..|+. .|++|+++...-..+
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~-~G~~vi~lG~~~p~~ 123 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEA-NGFEVIDLGRDVPPE 123 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHH-CCCEEEECCCCCCHH
Confidence 469999999999999999999999999 999999988544333
No 194
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=67.26 E-value=9.4 Score=37.62 Aligned_cols=115 Identities=11% Similarity=0.166 Sum_probs=65.5
Q ss_pred CCCeEEe-cccChHHhhcccccceeeeccChhhHHHHHhcCCCEEecccccchhhhHHHHHHHHcceEEEecc--cCCcc
Q 043168 328 GQGLVVQ-KWAPQVEILSHKSISAFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARG--MNCEV 404 (473)
Q Consensus 328 ~~~v~~~-~~~p~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~--~~~~~ 404 (473)
..++... +..+-.++|..++ ++||--. ..+.|.+..++|+|......|..... + |.-...... ...--
T Consensus 251 ~~~i~~~~~~~~~~~ll~~aD--iLITDyS-Si~fD~~~l~KPiify~~D~~~Y~~~-----r-g~~~~~~~~~pg~~~~ 321 (369)
T PF04464_consen 251 NSNIIFVSDNEDIYDLLAAAD--ILITDYS-SIIFDFLLLNKPIIFYQPDLEEYEKE-----R-GFYFDYEEDLPGPIVY 321 (369)
T ss_dssp TTTEEE-TT-S-HHHHHHT-S--EEEESS--THHHHHGGGT--EEEE-TTTTTTTTT-----S-SBSS-TTTSSSS-EES
T ss_pred CCcEEECCCCCCHHHHHHhcC--EEEEech-hHHHHHHHhCCCEEEEeccHHHHhhc-----c-CCCCchHhhCCCceeC
Confidence 4565553 3445788998866 7999874 47889999999999887666655322 2 333332110 01234
Q ss_pred CHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHhhhhhhccCCChHHHHHHHH
Q 043168 405 SKENLSAKFELVMNETEKGMDLRKKASEVEMIIKNAVRNEEKFKGSSVKAMEQFL 459 (473)
Q Consensus 405 ~~~~l~~ai~~~l~~~~~~~~~~~~a~~~~~~~~~a~~~~~~~~g~~~~~~~~~~ 459 (473)
+.++|.++|..+++++. .++++-+++.+.+-.. .+|.++.+.++.++
T Consensus 322 ~~~eL~~~i~~~~~~~~---~~~~~~~~~~~~~~~~-----~Dg~s~eri~~~I~ 368 (369)
T PF04464_consen 322 NFEELIEAIENIIENPD---EYKEKREKFRDKFFKY-----NDGNSSERIVNYIF 368 (369)
T ss_dssp SHHHHHHHHTTHHHHHH---HTHHHHHHHHHHHSTT-------S-HHHHHHHHHH
T ss_pred CHHHHHHHHHhhhhCCH---HHHHHHHHHHHHhCCC-----CCchHHHHHHHHHh
Confidence 77999999999887661 3455566666666433 45666666665554
No 195
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=67.23 E-value=12 Score=31.10 Aligned_cols=40 Identities=13% Similarity=0.127 Sum_probs=36.3
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCc
Q 043168 4 RKENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPS 44 (473)
Q Consensus 4 ~~~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~ 44 (473)
+++||++.+.+.-||=...--+++.|+. .|.+|.....-.
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d-~GfeVi~~g~~~ 50 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALAD-AGFEVINLGLFQ 50 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHh-CCceEEecCCcC
Confidence 5789999999999999999999999999 999999887544
No 196
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=66.79 E-value=14 Score=32.11 Aligned_cols=71 Identities=18% Similarity=0.322 Sum_probs=46.8
Q ss_pred cccccceeeeccChhhHHHHHhcCCCEEecccc-----------------------cchhhhHHHHHHHHcceEEEeccc
Q 043168 344 SHKSISAFLSHCGWNSVLEALSHGVPIIGWPLA-----------------------AEQFYNSKLLEEVIGVCVEVARGM 400 (473)
Q Consensus 344 ~~~~~~~~I~HgG~gs~~eal~~GvP~i~~P~~-----------------------~DQ~~~a~~v~~~lG~G~~l~~~~ 400 (473)
.+..++.+|++||...+..... ++|+|-+|.. .........+.+.||+-+....
T Consensus 31 ~~~g~dViIsRG~ta~~lr~~~-~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~~~i~~~~-- 107 (176)
T PF06506_consen 31 ESEGADVIISRGGTAELLRKHV-SIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLGVDIKIYP-- 107 (176)
T ss_dssp TTTT-SEEEEEHHHHHHHHCC--SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT-EEEEEE--
T ss_pred HhcCCeEEEECCHHHHHHHHhC-CCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhCCceEEEE--
Confidence 3455778999999999998877 9999999973 2244456777777777666554
Q ss_pred CCccCHHHHHHHHHHHHcC
Q 043168 401 NCEVSKENLSAKFELVMNE 419 (473)
Q Consensus 401 ~~~~~~~~l~~ai~~~l~~ 419 (473)
--+.+++...|.++..+
T Consensus 108 --~~~~~e~~~~i~~~~~~ 124 (176)
T PF06506_consen 108 --YDSEEEIEAAIKQAKAE 124 (176)
T ss_dssp --ESSHHHHHHHHHHHHHT
T ss_pred --ECCHHHHHHHHHHHHHc
Confidence 34678888888887655
No 197
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=66.71 E-value=8.3 Score=38.00 Aligned_cols=43 Identities=19% Similarity=0.228 Sum_probs=37.1
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhh
Q 043168 7 NIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (473)
Q Consensus 7 ~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~~ 51 (473)
=||+-.-|+.|--+=+++++..|.. +| .|.|++.++....+.-
T Consensus 95 ~iLIgGdPGIGKSTLLLQva~~lA~-~~-~vLYVsGEES~~Qikl 137 (456)
T COG1066 95 VILIGGDPGIGKSTLLLQVAARLAK-RG-KVLYVSGEESLQQIKL 137 (456)
T ss_pred EEEEccCCCCCHHHHHHHHHHHHHh-cC-cEEEEeCCcCHHHHHH
Confidence 3566677999999999999999999 99 9999999987777654
No 198
>PRK12342 hypothetical protein; Provisional
Probab=65.82 E-value=11 Score=34.96 Aligned_cols=39 Identities=5% Similarity=-0.179 Sum_probs=30.6
Q ss_pred HHHHHHHhhhhhccCCCCCeEEEeCCCcc------hHHHHHHHhCCcEEEEc
Q 043168 100 PHFRKLINGLIDEQNGHKPVCIIADMFFA------WSAEIAQEYGIFNALFV 145 (473)
Q Consensus 100 ~~l~~~l~~~~~~~~~~~pDlVI~D~~~~------~~~~~A~~~giP~v~~~ 145 (473)
..|...++.. .||+|++..... .+..+|+.+|+|++++.
T Consensus 99 ~~La~~i~~~-------~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v 143 (254)
T PRK12342 99 KALAAAIEKI-------GFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAV 143 (254)
T ss_pred HHHHHHHHHh-------CCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeE
Confidence 4556677777 899999876554 36789999999999874
No 199
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=65.31 E-value=56 Score=28.36 Aligned_cols=41 Identities=20% Similarity=0.124 Sum_probs=31.6
Q ss_pred hhhHHHHHHHhhhhhccCCCCCeEEEeCCCcc---hHHHHHHHhCCcEEEE
Q 043168 97 SFKPHFRKLINGLIDEQNGHKPVCIIADMFFA---WSAEIAQEYGIFNALF 144 (473)
Q Consensus 97 ~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~~---~~~~~A~~~giP~v~~ 144 (473)
...+.+.++++.. +||+|++..... .+..+|..+|.|++.-
T Consensus 78 ~~a~~l~~~i~~~-------~p~~Vl~g~t~~g~~la~rlA~~L~~~~vsd 121 (181)
T cd01985 78 ATAKALAALIKKE-------KPDLILAGATSIGKQLAPRVAALLGVPQISD 121 (181)
T ss_pred HHHHHHHHHHHHh-------CCCEEEECCcccccCHHHHHHHHhCCCccee
Confidence 3445556777777 899999887665 4678999999999875
No 200
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=64.26 E-value=16 Score=26.94 Aligned_cols=36 Identities=17% Similarity=0.152 Sum_probs=32.0
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEc
Q 043168 5 KENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVN 41 (473)
Q Consensus 5 ~~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~ 41 (473)
++-++++..+...|...+-.+|+.|.+ .|+.|...=
T Consensus 15 ~k~~v~i~HG~~eh~~ry~~~a~~L~~-~G~~V~~~D 50 (79)
T PF12146_consen 15 PKAVVVIVHGFGEHSGRYAHLAEFLAE-QGYAVFAYD 50 (79)
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHHHHh-CCCEEEEEC
Confidence 367899999999999999999999999 999987654
No 201
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=64.22 E-value=23 Score=35.76 Aligned_cols=36 Identities=17% Similarity=0.199 Sum_probs=26.9
Q ss_pred CCCCCceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCC
Q 043168 1 MAQRKENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTP 43 (473)
Q Consensus 1 m~~~~~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~ 43 (473)
|. +++|||++..+++-| +|+++|++ -++-..+++.+
T Consensus 1 ~~-~~~kvLviG~g~reh-----al~~~~~~-~~~~~~~~~~p 36 (426)
T PRK13789 1 MQ-VKLKVLLIGSGGRES-----AIAFALRK-SNLLSELKVFP 36 (426)
T ss_pred CC-CCcEEEEECCCHHHH-----HHHHHHHh-CCCCCEEEEEC
Confidence 55 456999999999888 78999999 78554444434
No 202
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=64.10 E-value=19 Score=28.74 Aligned_cols=38 Identities=16% Similarity=0.174 Sum_probs=33.6
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCc
Q 043168 6 ENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPS 44 (473)
Q Consensus 6 ~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~ 44 (473)
.|+++.+.+..-|-..+.-||..|++ .||+|.++....
T Consensus 1 ~~v~~~~~~~~~~~lGl~~la~~l~~-~G~~v~~~d~~~ 38 (121)
T PF02310_consen 1 IRVVLACVPGEVHPLGLLYLAAYLRK-AGHEVDILDANV 38 (121)
T ss_dssp -EEEEEEBTTSSTSHHHHHHHHHHHH-TTBEEEEEESSB
T ss_pred CEEEEEeeCCcchhHHHHHHHHHHHH-CCCeEEEECCCC
Confidence 37899999999999999999999999 999999996444
No 203
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=64.04 E-value=75 Score=27.11 Aligned_cols=28 Identities=18% Similarity=0.315 Sum_probs=21.1
Q ss_pred cceeeeccChh------hHHHHHhcCCCEEeccc
Q 043168 348 ISAFLSHCGWN------SVLEALSHGVPIIGWPL 375 (473)
Q Consensus 348 ~~~~I~HgG~g------s~~eal~~GvP~i~~P~ 375 (473)
..++++|.|-| .+.+|...++|+|++.-
T Consensus 60 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 93 (162)
T cd07038 60 LGALVTTYGVGELSALNGIAGAYAEHVPVVHIVG 93 (162)
T ss_pred CEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEec
Confidence 44567776644 66789999999999853
No 204
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=64.02 E-value=62 Score=27.70 Aligned_cols=27 Identities=30% Similarity=0.407 Sum_probs=21.7
Q ss_pred cceeeeccChh------hHHHHHhcCCCEEecc
Q 043168 348 ISAFLSHCGWN------SVLEALSHGVPIIGWP 374 (473)
Q Consensus 348 ~~~~I~HgG~g------s~~eal~~GvP~i~~P 374 (473)
..++++|+|-| .+.+|...++|+|++.
T Consensus 61 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 93 (162)
T cd07037 61 PVAVVCTSGTAVANLLPAVVEAYYSGVPLLVLT 93 (162)
T ss_pred CEEEEECCchHHHHHhHHHHHHHhcCCCEEEEE
Confidence 44678888855 6679999999999984
No 205
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=64.00 E-value=16 Score=32.39 Aligned_cols=44 Identities=11% Similarity=0.024 Sum_probs=38.1
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhh
Q 043168 5 KENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKL 49 (473)
Q Consensus 5 ~~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v 49 (473)
+.+|++.+.++--|-....-++..|.. .|++|++++..-..+.+
T Consensus 84 ~~~vv~~t~~gd~H~lG~~~v~~~l~~-~G~~vi~LG~~vp~e~~ 127 (197)
T TIGR02370 84 LGKVVCGVAEGDVHDIGKNIVVTMLRA-NGFDVIDLGRDVPIDTV 127 (197)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHh-CCcEEEECCCCCCHHHH
Confidence 458999999999999999999999999 99999999965544443
No 206
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=63.60 E-value=44 Score=30.50 Aligned_cols=43 Identities=14% Similarity=0.170 Sum_probs=34.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCC-CcEEEEEcCCcchhhhhh
Q 043168 8 IVMFPLMAQGHIIPFLALALHLENTN-RYTITFVNTPSNLKKLKS 51 (473)
Q Consensus 8 Il~~~~~~~GHv~P~l~LA~~L~~~r-Gh~Vt~~~~~~~~~~v~~ 51 (473)
+++...|+.|-..=++.++..+.. . |+.|.|++.+.....+..
T Consensus 16 ~lI~G~~G~GKT~~~~~~~~~~~~-~~g~~vly~s~E~~~~~~~~ 59 (242)
T cd00984 16 IIIAARPSMGKTAFALNIAENIAK-KQGKPVLFFSLEMSKEQLLQ 59 (242)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHH-hCCCceEEEeCCCCHHHHHH
Confidence 466667799999999999888877 6 999999998776555444
No 207
>PRK05595 replicative DNA helicase; Provisional
Probab=63.30 E-value=32 Score=34.97 Aligned_cols=43 Identities=12% Similarity=0.077 Sum_probs=33.9
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCcEEEEEcCCcchhhhhh
Q 043168 8 IVMFPLMAQGHIIPFLALALHLE-NTNRYTITFVNTPSNLKKLKS 51 (473)
Q Consensus 8 Il~~~~~~~GHv~P~l~LA~~L~-~~rGh~Vt~~~~~~~~~~v~~ 51 (473)
+++...|+.|-..=.+.+|..+. + .|+.|.|++.+-....+..
T Consensus 204 iviaarpg~GKT~~al~ia~~~a~~-~g~~vl~fSlEms~~~l~~ 247 (444)
T PRK05595 204 ILIAARPSMGKTTFALNIAEYAALR-EGKSVAIFSLEMSKEQLAY 247 (444)
T ss_pred EEEEecCCCChHHHHHHHHHHHHHH-cCCcEEEEecCCCHHHHHH
Confidence 45666789999999999998765 6 7999999998766555544
No 208
>PLN02470 acetolactate synthase
Probab=63.14 E-value=43 Score=35.45 Aligned_cols=28 Identities=18% Similarity=0.395 Sum_probs=22.9
Q ss_pred ccceeeeccChh------hHHHHHhcCCCEEecc
Q 043168 347 SISAFLSHCGWN------SVLEALSHGVPIIGWP 374 (473)
Q Consensus 347 ~~~~~I~HgG~g------s~~eal~~GvP~i~~P 374 (473)
.++++++|.|-| .+++|...++|+|++.
T Consensus 76 ~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 76 KVGVCIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred CCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 355788888855 7789999999999985
No 209
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=63.02 E-value=20 Score=30.77 Aligned_cols=42 Identities=17% Similarity=0.193 Sum_probs=28.9
Q ss_pred hhhhHHHHHHHhhhhhccCCCCCeEEEeCCCcchHH-H--HH-H-Hh-CCcEEEE
Q 043168 96 LSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSA-E--IA-Q-EY-GIFNALF 144 (473)
Q Consensus 96 ~~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~~~~~-~--~A-~-~~-giP~v~~ 144 (473)
....+.+.++|++. +||+||+.+.+.... . +- + .+ ++|++.+
T Consensus 75 ~~~~~~l~~~l~~~-------~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tv 122 (169)
T PF06925_consen 75 RLFARRLIRLLREF-------QPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTV 122 (169)
T ss_pred HHHHHHHHHHHhhc-------CCCEEEECCcchhhhHHHHHHHhhcccCCcEEEE
Confidence 44556788999999 999999998765433 1 11 2 23 5787766
No 210
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=63.01 E-value=70 Score=25.09 Aligned_cols=84 Identities=14% Similarity=0.050 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhhcCCCCCCceEEeccCCCCCCCCCCCCCCCCCCCCCCchHHHHHHhh
Q 043168 18 HIIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLPFHLFPNFFESTLS 97 (473)
Q Consensus 18 Hv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~ip~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 97 (473)
+-.-++.+++.|.. .|+++ +++ +...+.+.. .|+.+..+..+ ..
T Consensus 11 ~k~~~~~~~~~l~~-~G~~l-~aT-~gT~~~l~~-----~gi~~~~v~~~------~~---------------------- 54 (110)
T cd01424 11 DKPEAVEIAKRLAE-LGFKL-VAT-EGTAKYLQE-----AGIPVEVVNKV------SE---------------------- 54 (110)
T ss_pred cHhHHHHHHHHHHH-CCCEE-EEc-hHHHHHHHH-----cCCeEEEEeec------CC----------------------
Confidence 55678899999999 99998 344 556667776 34455544311 00
Q ss_pred hhHHHHHHHhhhhhccCCCCCeEEEeCCCc-------chHHHHHHHhCCcEEEE
Q 043168 98 FKPHFRKLINGLIDEQNGHKPVCIIADMFF-------AWSAEIAQEYGIFNALF 144 (473)
Q Consensus 98 ~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~-------~~~~~~A~~~giP~v~~ 144 (473)
-.+.+.+.+++. ++|+||.-... +.....|-.+|||+++-
T Consensus 55 ~~~~i~~~i~~~-------~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T~ 101 (110)
T cd01424 55 GRPNIVDLIKNG-------EIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFTT 101 (110)
T ss_pred CchhHHHHHHcC-------CeEEEEECCCCCccCccHHHHHHHHHHhCCCEEec
Confidence 113456777777 89999984322 34456889999999853
No 211
>PRK09165 replicative DNA helicase; Provisional
Probab=62.84 E-value=33 Score=35.44 Aligned_cols=43 Identities=12% Similarity=0.142 Sum_probs=33.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCC---------------CcEEEEEcCCcchhhhhh
Q 043168 8 IVMFPLMAQGHIIPFLALALHLENTN---------------RYTITFVNTPSNLKKLKS 51 (473)
Q Consensus 8 Il~~~~~~~GHv~P~l~LA~~L~~~r---------------Gh~Vt~~~~~~~~~~v~~ 51 (473)
|++..-|+.|-..=.+.+|..... . |..|.|++.+-....+..
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~-~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~ 277 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAK-AYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLAT 277 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHH-hhcccccccccccccCCCeEEEEeCcCCHHHHHH
Confidence 566777899999999999887764 3 788999998776665544
No 212
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=62.68 E-value=20 Score=33.25 Aligned_cols=37 Identities=19% Similarity=0.094 Sum_probs=31.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcc
Q 043168 8 IVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSN 45 (473)
Q Consensus 8 Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~ 45 (473)
++|..-|+.|...-...+|..+.+ .|++|.++..+..
T Consensus 3 ~~~~gkgG~GKtt~a~~la~~~a~-~g~~vLlvd~D~~ 39 (254)
T cd00550 3 IFFGGKGGVGKTTISAATAVRLAE-QGKKVLLVSTDPA 39 (254)
T ss_pred EEEECCCCchHHHHHHHHHHHHHH-CCCCceEEeCCCc
Confidence 345556899999999999999999 9999999987664
No 213
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=62.28 E-value=4.3 Score=35.67 Aligned_cols=39 Identities=21% Similarity=0.209 Sum_probs=28.4
Q ss_pred CceEEEEcCCCccCHHH------------HHHHHHHHHhCCCcEEEEEcCCc
Q 043168 5 KENIVMFPLMAQGHIIP------------FLALALHLENTNRYTITFVNTPS 44 (473)
Q Consensus 5 ~~~Il~~~~~~~GHv~P------------~l~LA~~L~~~rGh~Vt~~~~~~ 44 (473)
.+|||+.+.|+.=++.| -..||+++.. +||+|+++..+.
T Consensus 3 gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~-~Ga~V~li~g~~ 53 (185)
T PF04127_consen 3 GKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAAR-RGAEVTLIHGPS 53 (185)
T ss_dssp T-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHH-TT-EEEEEE-TT
T ss_pred CCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHH-CCCEEEEEecCc
Confidence 35788888777777665 3589999999 999999999873
No 214
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=62.08 E-value=14 Score=28.31 Aligned_cols=85 Identities=22% Similarity=0.156 Sum_probs=49.3
Q ss_pred HHHHHHHHHhCCCcEEEEEcCCcchhhhhhcCCCCCCceEEeccCCCCCCCCCCCCCCCCCCCCCCchHHHHHHhhhhHH
Q 043168 22 FLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLPFHLFPNFFESTLSFKPH 101 (473)
Q Consensus 22 ~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~ip~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (473)
++.+|+.|.. .||++ +.++.-.+.+.. .|+.+..+... ...+.. +. . ...
T Consensus 2 ~~~~a~~l~~-lG~~i--~AT~gTa~~L~~-----~Gi~~~~v~~~---~~~~~~-------~~----g--------~~~ 51 (95)
T PF02142_consen 2 IVPLAKRLAE-LGFEI--YATEGTAKFLKE-----HGIEVTEVVNK---IGEGES-------PD----G--------RVQ 51 (95)
T ss_dssp HHHHHHHHHH-TTSEE--EEEHHHHHHHHH-----TT--EEECCEE---HSTG-G-------GT----H--------CHH
T ss_pred HHHHHHHHHH-CCCEE--EEChHHHHHHHH-----cCCCceeeeee---cccCcc-------CC----c--------hhH
Confidence 5789999999 99764 444666677777 44454433200 000000 00 0 005
Q ss_pred HHHHHhhhhhccCCCCCeEEEeCCCcchH---------HHHHHHhCCcEEE
Q 043168 102 FRKLINGLIDEQNGHKPVCIIADMFFAWS---------AEIAQEYGIFNAL 143 (473)
Q Consensus 102 l~~~l~~~~~~~~~~~pDlVI~D~~~~~~---------~~~A~~~giP~v~ 143 (473)
+.++++.. +.|+||........ ..+|..++||+++
T Consensus 52 i~~~i~~~-------~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~T 95 (95)
T PF02142_consen 52 IMDLIKNG-------KIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLFT 95 (95)
T ss_dssp HHHHHHTT-------SEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEEC
T ss_pred HHHHHHcC-------CeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCcC
Confidence 67788888 99999987644311 3578889999863
No 215
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=62.03 E-value=18 Score=29.30 Aligned_cols=37 Identities=14% Similarity=0.161 Sum_probs=34.1
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCc
Q 043168 7 NIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPS 44 (473)
Q Consensus 7 ~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~ 44 (473)
||++.+.++-.|.....-++.-|+. .|++|++.....
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~-~G~~vi~lG~~v 37 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRD-AGFEVIYTGLRQ 37 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHH-CCCEEEECCCCC
Confidence 6899999999999999999999999 999999999644
No 216
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=61.48 E-value=97 Score=28.95 Aligned_cols=37 Identities=11% Similarity=-0.033 Sum_probs=25.3
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcch
Q 043168 7 NIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNL 46 (473)
Q Consensus 7 ~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~ 46 (473)
|||+.---+. |..-+..|+++|.. .| +|+++.+...+
T Consensus 2 ~ILlTNDDGi-~apGi~aL~~al~~-~g-~V~VvAP~~eq 38 (266)
T PRK13934 2 KILVTNDDGV-HSPGLRLLYEFVSP-LG-EVDVVAPETPK 38 (266)
T ss_pred eEEEEcCCCC-CCHHHHHHHHHHHh-CC-cEEEEccCCCC
Confidence 5555543333 33567889999988 88 79988866544
No 217
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=61.03 E-value=92 Score=26.03 Aligned_cols=28 Identities=14% Similarity=0.153 Sum_probs=21.5
Q ss_pred cceeeeccChh------hHHHHHhcCCCEEeccc
Q 043168 348 ISAFLSHCGWN------SVLEALSHGVPIIGWPL 375 (473)
Q Consensus 348 ~~~~I~HgG~g------s~~eal~~GvP~i~~P~ 375 (473)
..++++|+|-| .+.+|...++|+|++.-
T Consensus 60 ~~v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~ 93 (155)
T cd07035 60 PGVVLVTSGPGLTNAVTGLANAYLDSIPLLVITG 93 (155)
T ss_pred CEEEEEcCCCcHHHHHHHHHHHHhhCCCEEEEeC
Confidence 44678886644 67789999999999853
No 218
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=60.99 E-value=64 Score=28.72 Aligned_cols=101 Identities=14% Similarity=0.176 Sum_probs=53.3
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCC--CcEEEEEcCC-cc---hhhhhhcCCCCCCceEEeccCCCCCCCCCCCCCC
Q 043168 6 ENIVMFPLMAQGHIIPFLALALHLENTN--RYTITFVNTP-SN---LKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTEN 79 (473)
Q Consensus 6 ~~Il~~~~~~~GHv~P~l~LA~~L~~~r--Gh~Vt~~~~~-~~---~~~v~~~~~~~~~~~~~~ip~~~~~~~l~~~~~~ 79 (473)
+||+++..+..+-+ .+|.+++.+ . +++|.++.+. .. ...... .++.+..++.. .+.
T Consensus 2 ~ki~vl~sg~gs~~---~~ll~~~~~-~~~~~~I~~vvs~~~~~~~~~~a~~-----~gIp~~~~~~~----~~~----- 63 (200)
T PRK05647 2 KRIVVLASGNGSNL---QAIIDACAA-GQLPAEIVAVISDRPDAYGLERAEA-----AGIPTFVLDHK----DFP----- 63 (200)
T ss_pred ceEEEEEcCCChhH---HHHHHHHHc-CCCCcEEEEEEecCccchHHHHHHH-----cCCCEEEECcc----ccC-----
Confidence 48999987764433 355666766 4 3777765433 22 222333 34455443311 110
Q ss_pred CCCCCCCCchHHHHHHhhhhHHHHHHHhhhhhccCCCCCeEEEeCCCcc-hHHHHHHHhCCcEEEEc
Q 043168 80 SDSLPFHLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFA-WSAEIAQEYGIFNALFV 145 (473)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~~-~~~~~A~~~giP~v~~~ 145 (473)
.-....+.+.++++.+ +||++|+-.+.. ....+-..+.-.++-+.
T Consensus 64 --------------~~~~~~~~~~~~l~~~-------~~D~iv~~~~~~ii~~~~l~~~~~~~iNiH 109 (200)
T PRK05647 64 --------------SREAFDAALVEALDAY-------QPDLVVLAGFMRILGPTFVSAYEGRIINIH 109 (200)
T ss_pred --------------chhHhHHHHHHHHHHh-------CcCEEEhHHhhhhCCHHHHhhccCCEEEEe
Confidence 0112334567788888 999998755432 33334444444556553
No 219
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=60.49 E-value=12 Score=32.69 Aligned_cols=44 Identities=18% Similarity=0.166 Sum_probs=36.3
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhh
Q 043168 6 ENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (473)
Q Consensus 6 ~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~~ 51 (473)
+||++...++.|=+. ...+.+.|++ .|++|.++.++...+.+..
T Consensus 2 k~Ill~vtGsiaa~~-~~~li~~L~~-~g~~V~vv~T~~A~~fi~~ 45 (182)
T PRK07313 2 KNILLAVSGSIAAYK-AADLTSQLTK-RGYQVTVLMTKAATKFITP 45 (182)
T ss_pred CEEEEEEeChHHHHH-HHHHHHHHHH-CCCEEEEEEChhHHHHcCH
Confidence 488888877777655 8999999999 9999999998887776654
No 220
>PRK06321 replicative DNA helicase; Provisional
Probab=60.18 E-value=58 Score=33.40 Aligned_cols=43 Identities=16% Similarity=0.209 Sum_probs=33.9
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCcEEEEEcCCcchhhhhh
Q 043168 8 IVMFPLMAQGHIIPFLALALHLE-NTNRYTITFVNTPSNLKKLKS 51 (473)
Q Consensus 8 Il~~~~~~~GHv~P~l~LA~~L~-~~rGh~Vt~~~~~~~~~~v~~ 51 (473)
|++..-|+.|-..=.+.+|.... . .|..|.|++-+-....+..
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~~-~g~~v~~fSLEMs~~ql~~ 272 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQ-NRLPVGIFSLEMTVDQLIH 272 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHh-cCCeEEEEeccCCHHHHHH
Confidence 46677789999999999998876 4 5899999997765554443
No 221
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=60.14 E-value=75 Score=25.23 Aligned_cols=94 Identities=15% Similarity=0.056 Sum_probs=56.5
Q ss_pred EEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhhcCCCCCCceEEeccCCCCCCCCCCCCCCCCCCCCCCch
Q 043168 10 MFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLPFHLFP 89 (473)
Q Consensus 10 ~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~ip~~~~~~~l~~~~~~~~~~~~~~~~ 89 (473)
|++.... +=.-++.+|+.|.. .|++|. + ++...+.+.. .++.+..+. .... .. ..
T Consensus 4 lisv~~~-dk~~~~~~a~~l~~-~G~~i~-a-T~gTa~~L~~-----~gi~~~~v~------~~~~-~~-----~~---- 58 (116)
T cd01423 4 LISIGSY-SKPELLPTAQKLSK-LGYKLY-A-TEGTADFLLE-----NGIPVTPVA------WPSE-EP-----QN---- 58 (116)
T ss_pred EEecCcc-cchhHHHHHHHHHH-CCCEEE-E-ccHHHHHHHH-----cCCCceEee------eccC-CC-----CC----
Confidence 3443333 44568899999999 999983 4 4555666666 333444332 0000 00 00
Q ss_pred HHHHHHhhhhHHHHHHHhhhhhccCCCCCeEEEeCCC---------cchHHHHHHHhCCcEEE
Q 043168 90 NFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMF---------FAWSAEIAQEYGIFNAL 143 (473)
Q Consensus 90 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~---------~~~~~~~A~~~giP~v~ 143 (473)
-.+.+.+++++. ++|+||.-.. .+.....|-.+|||+++
T Consensus 59 --------~~~~i~~~i~~~-------~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~iT 106 (116)
T cd01423 59 --------DKPSLRELLAEG-------KIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLIT 106 (116)
T ss_pred --------CchhHHHHHHcC-------CceEEEECCCCCCCccccCcEeeehhhHhhCCcccc
Confidence 014567777777 8999998432 12345688999999974
No 222
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=60.07 E-value=17 Score=34.49 Aligned_cols=53 Identities=8% Similarity=0.095 Sum_probs=36.4
Q ss_pred cceeeeccChhhHHHHHh----cCCCEEecccccchhhhHHHHHHHHcceEEEecccCCccCHHHHHHHHHHHHcCC
Q 043168 348 ISAFLSHCGWNSVLEALS----HGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAKFELVMNET 420 (473)
Q Consensus 348 ~~~~I~HgG~gs~~eal~----~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ai~~~l~~~ 420 (473)
++++|+-||-||++.++. .++|++.+-.. .+|.- -..+.+++.+++.++++++
T Consensus 65 ~Dlvi~iGGDGT~L~aa~~~~~~~~PilGIN~G--------------~lGFL------t~~~~~~~~~~l~~i~~g~ 121 (287)
T PRK14077 65 SDFLISLGGDGTLISLCRKAAEYDKFVLGIHAG--------------HLGFL------TDITVDEAEKFFQAFFQGE 121 (287)
T ss_pred CCEEEEECCCHHHHHHHHHhcCCCCcEEEEeCC--------------CcccC------CcCCHHHHHHHHHHHHcCC
Confidence 458999999999998765 37898888211 12221 2356777888888877654
No 223
>PRK05920 aromatic acid decarboxylase; Validated
Probab=59.96 E-value=15 Score=32.83 Aligned_cols=45 Identities=24% Similarity=0.185 Sum_probs=36.2
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhh
Q 043168 5 KENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (473)
Q Consensus 5 ~~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~~ 51 (473)
++||++.-.|+.+= .-.+.+.+.|++ .||+|.++.++.....+..
T Consensus 3 ~krIllgITGsiaa-~ka~~lvr~L~~-~g~~V~vi~T~~A~~fv~~ 47 (204)
T PRK05920 3 MKRIVLAITGASGA-IYGVRLLECLLA-ADYEVHLVISKAAQKVLAT 47 (204)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHHHH-CCCEEEEEEChhHHHHHHH
Confidence 45887776665554 688999999999 9999999999887776654
No 224
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=59.30 E-value=72 Score=29.23 Aligned_cols=33 Identities=18% Similarity=0.123 Sum_probs=23.6
Q ss_pred CCeEEE-eCCCcc-hHHHHHHHhCCcEEEEccccH
Q 043168 117 KPVCII-ADMFFA-WSAEIAQEYGIFNALFVGGGS 149 (473)
Q Consensus 117 ~pDlVI-~D~~~~-~~~~~A~~~giP~v~~~~~~~ 149 (473)
-||+++ .|...- -|..=|.++|||.|.+.-+.+
T Consensus 156 ~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~ 190 (252)
T COG0052 156 LPDVLFVIDPRKEKIAVKEANKLGIPVVALVDTNC 190 (252)
T ss_pred CCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCCC
Confidence 399665 666443 567789999999999855443
No 225
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=58.75 E-value=26 Score=31.43 Aligned_cols=101 Identities=16% Similarity=0.067 Sum_probs=54.4
Q ss_pred CCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchh-hhhhcCCCCCCceEEeccCCCCCCCCCCCCCCCCCCCCCCchHH
Q 043168 13 LMAQGHIIPFLALALHLENTNRYTITFVNTPSNLK-KLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLPFHLFPNF 91 (473)
Q Consensus 13 ~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~-~v~~~~~~~~~~~~~~ip~~~~~~~l~~~~~~~~~~~~~~~~~~ 91 (473)
--+.|--.=+.+++.-+.. .||+|++++++.... .+.++-. .++.... .+-.+.............+.
T Consensus 36 d~~tGKSvLsqr~~YG~L~-~g~~v~yvsTe~T~refi~qm~s--l~ydv~~--------~~l~G~l~~~~~~~~~~~~~ 104 (235)
T COG2874 36 DNGTGKSVLSQRFAYGFLM-NGYRVTYVSTELTVREFIKQMES--LSYDVSD--------FLLSGRLLFFPVNLEPVNWG 104 (235)
T ss_pred CCCccHHHHHHHHHHHHHh-CCceEEEEEechhHHHHHHHHHh--cCCCchH--------HHhcceeEEEEecccccccC
Confidence 3477777778899999999 999999999876332 3332211 1111100 01011000000000011122
Q ss_pred HHHHhhhhHHHHHHHhhhhhccCCCCCeEEEeCCCcchHH
Q 043168 92 FESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSA 131 (473)
Q Consensus 92 ~~~~~~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~~~~~ 131 (473)
-+......+.+-+.++.+ +-|+||.|.+...+.
T Consensus 105 ~~~~~~~L~~l~~~~k~~-------~~dViIIDSls~~~~ 137 (235)
T COG2874 105 RRSARKLLDLLLEFIKRW-------EKDVIIIDSLSAFAT 137 (235)
T ss_pred hHHHHHHHHHHHhhHHhh-------cCCEEEEecccHHhh
Confidence 233345555666777788 899999999776443
No 226
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=58.59 E-value=15 Score=32.34 Aligned_cols=44 Identities=16% Similarity=0.083 Sum_probs=36.8
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCC-CcEEEEEcCCcchhhhhh
Q 043168 6 ENIVMFPLMAQGHIIPFLALALHLENTN-RYTITFVNTPSNLKKLKS 51 (473)
Q Consensus 6 ~~Il~~~~~~~GHv~P~l~LA~~L~~~r-Gh~Vt~~~~~~~~~~v~~ 51 (473)
+||++...|+.| ..-...|.+.|.+ . ||+|.++.++.....+..
T Consensus 2 k~IllgVTGsia-a~ka~~l~~~L~k-~~g~~V~vv~T~~A~~fv~~ 46 (185)
T PRK06029 2 KRLIVGISGASG-AIYGVRLLQVLRD-VGEIETHLVISQAARQTLAH 46 (185)
T ss_pred CEEEEEEECHHH-HHHHHHHHHHHHh-hcCCeEEEEECHHHHHHHHH
Confidence 488888878777 6668999999988 6 999999999988877765
No 227
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=58.59 E-value=15 Score=34.15 Aligned_cols=46 Identities=26% Similarity=0.370 Sum_probs=40.1
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhh
Q 043168 5 KENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (473)
Q Consensus 5 ~~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~~ 51 (473)
...++|+..|+.|-..=..+||.+|.. +|+.|+|++.++....+..
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~-~g~sv~f~~~~el~~~Lk~ 150 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLK-AGISVLFITAPDLLSKLKA 150 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHH-cCCeEEEEEHHHHHHHHHH
Confidence 457899999998988889999999999 9999999999977766665
No 228
>PRK08760 replicative DNA helicase; Provisional
Probab=58.16 E-value=31 Score=35.41 Aligned_cols=44 Identities=14% Similarity=0.084 Sum_probs=33.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhh
Q 043168 8 IVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (473)
Q Consensus 8 Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~~ 51 (473)
|++..-|+.|-..=.+.+|.......|+.|.|++.+-....+..
T Consensus 232 ivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql~~ 275 (476)
T PRK08760 232 IILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQLAM 275 (476)
T ss_pred EEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHHHH
Confidence 46667789999999999998875405999999997765554443
No 229
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=58.13 E-value=17 Score=34.83 Aligned_cols=53 Identities=17% Similarity=0.223 Sum_probs=38.0
Q ss_pred cceeeeccChhhHHHHHhc----CCCEEecccccchhhhHHHHHHHHcceEEEecccCCccCHHHHHHHHHHHHcCC
Q 043168 348 ISAFLSHCGWNSVLEALSH----GVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAKFELVMNET 420 (473)
Q Consensus 348 ~~~~I~HgG~gs~~eal~~----GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ai~~~l~~~ 420 (473)
++++|+=||=||++.|... ++|++.+-.. .+|.- -..+.+++.+++.++++++
T Consensus 69 ~Dlvi~iGGDGTlL~aar~~~~~~iPilGIN~G--------------~lGFL------t~~~~~~~~~~l~~l~~g~ 125 (305)
T PRK02649 69 MKFAIVLGGDGTVLSAARQLAPCGIPLLTINTG--------------HLGFL------TEAYLNQLDEAIDQVLAGQ 125 (305)
T ss_pred cCEEEEEeCcHHHHHHHHHhcCCCCcEEEEeCC--------------CCccc------ccCCHHHHHHHHHHHHcCC
Confidence 5689999999999998764 7899988320 12211 2346778888888888765
No 230
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=57.56 E-value=19 Score=33.41 Aligned_cols=40 Identities=8% Similarity=-0.191 Sum_probs=30.6
Q ss_pred HHHHHHHhhhhhccCCCCCeEEEeCCCcc------hHHHHHHHhCCcEEEEcc
Q 043168 100 PHFRKLINGLIDEQNGHKPVCIIADMFFA------WSAEIAQEYGIFNALFVG 146 (473)
Q Consensus 100 ~~l~~~l~~~~~~~~~~~pDlVI~D~~~~------~~~~~A~~~giP~v~~~~ 146 (473)
..|...++.. .||+|++..... .+..+|+.+|+|++++..
T Consensus 102 ~~La~ai~~~-------~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~ 147 (256)
T PRK03359 102 SALAAAAQKA-------GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVS 147 (256)
T ss_pred HHHHHHHHHh-------CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEE
Confidence 4556677777 899999865543 467899999999998743
No 231
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=56.99 E-value=1.2e+02 Score=25.79 Aligned_cols=34 Identities=24% Similarity=0.311 Sum_probs=29.7
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEc
Q 043168 7 NIVMFPLMAQGHIIPFLALALHLENTNRYTITFVN 41 (473)
Q Consensus 7 ~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~ 41 (473)
-|.+++.++.|-.+..+.+|-+... +|++|.|+-
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~-~g~~v~~vQ 37 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALG-HGYRVGVVQ 37 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEE
Confidence 4778888999999999999988888 999999954
No 232
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=56.87 E-value=27 Score=34.54 Aligned_cols=42 Identities=17% Similarity=0.184 Sum_probs=34.4
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhh
Q 043168 8 IVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKLK 50 (473)
Q Consensus 8 Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~ 50 (473)
+++...|+.|-..=++.+|..+.. .|..|.|++.+.....+.
T Consensus 85 vLI~G~pG~GKStLllq~a~~~a~-~g~~VlYvs~EEs~~qi~ 126 (372)
T cd01121 85 ILIGGDPGIGKSTLLLQVAARLAK-RGGKVLYVSGEESPEQIK 126 (372)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHh-cCCeEEEEECCcCHHHHH
Confidence 466666899999999999999999 999999999876555443
No 233
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=56.58 E-value=20 Score=34.50 Aligned_cols=44 Identities=14% Similarity=0.203 Sum_probs=34.6
Q ss_pred CCCCCceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhh
Q 043168 1 MAQRKENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (473)
Q Consensus 1 m~~~~~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~~ 51 (473)
|.+.++||+++..|+.|= .+|..|.+ .||+|+++.-.. .+.+..
T Consensus 1 ~~~~~m~I~IiG~GaiG~-----~lA~~L~~-~g~~V~~~~r~~-~~~~~~ 44 (313)
T PRK06249 1 MDSETPRIGIIGTGAIGG-----FYGAMLAR-AGFDVHFLLRSD-YEAVRE 44 (313)
T ss_pred CCCcCcEEEEECCCHHHH-----HHHHHHHH-CCCeEEEEEeCC-HHHHHh
Confidence 667778999999888884 56888999 999999998654 444444
No 234
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=56.02 E-value=27 Score=31.45 Aligned_cols=45 Identities=22% Similarity=0.245 Sum_probs=38.2
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhh
Q 043168 4 RKENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKL 49 (473)
Q Consensus 4 ~~~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v 49 (473)
.+.||++.+.++-.|-....-++..|.. +|++|++++..-..+.+
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~-~G~~Vi~LG~~vp~e~~ 131 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSN-NGYEVIDLGVMVPIEKI 131 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHh-CCCEEEECCCCCCHHHH
Confidence 3469999999999999999999999999 99999999965433333
No 235
>PRK10867 signal recognition particle protein; Provisional
Probab=55.84 E-value=67 Score=32.49 Aligned_cols=42 Identities=19% Similarity=0.146 Sum_probs=35.9
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCC-CcEEEEEcCCcchhhh
Q 043168 7 NIVMFPLMAQGHIIPFLALALHLENTN-RYTITFVNTPSNLKKL 49 (473)
Q Consensus 7 ~Il~~~~~~~GHv~P~l~LA~~L~~~r-Gh~Vt~~~~~~~~~~v 49 (473)
-|+|+..++.|-.+-...||..|+. . |+.|.+++.+.+....
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~-~~G~kV~lV~~D~~R~aa 144 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKK-KKKKKVLLVAADVYRPAA 144 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH-hcCCcEEEEEccccchHH
Confidence 4577777899999999999999999 8 9999999988766543
No 236
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=55.63 E-value=1.7e+02 Score=27.08 Aligned_cols=38 Identities=16% Similarity=0.037 Sum_probs=24.6
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchh
Q 043168 7 NIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLK 47 (473)
Q Consensus 7 ~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~ 47 (473)
|||+.---+. |---+..|+++|+. +|+|+++.+...+.
T Consensus 2 ~ILvtNDDGi-~apGl~aL~~~l~~--~~~V~VvAP~~~~S 39 (253)
T PRK13933 2 NILLTNDDGI-NAEGINTLAELLSK--YHEVIIVAPENQRS 39 (253)
T ss_pred eEEEEcCCCC-CChhHHHHHHHHHh--CCcEEEEccCCCCc
Confidence 5666553332 22337788999966 57999998665443
No 237
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=55.50 E-value=21 Score=33.94 Aligned_cols=53 Identities=19% Similarity=0.239 Sum_probs=38.4
Q ss_pred cceeeeccChhhHHHHHh----cCCCEEecccccchhhhHHHHHHHHcceEEEecccCCccCHHHHHHHHHHHHcCC
Q 043168 348 ISAFLSHCGWNSVLEALS----HGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAKFELVMNET 420 (473)
Q Consensus 348 ~~~~I~HgG~gs~~eal~----~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ai~~~l~~~ 420 (473)
++++|+=||=||++.|.. .++|++++-.. .+|.-. .++.+++.+++.++++++
T Consensus 69 ~D~vi~lGGDGT~L~aa~~~~~~~~PilGIN~G--------------~lGFL~------~~~~~~~~~~l~~i~~g~ 125 (296)
T PRK04539 69 CDLVAVLGGDGTFLSVAREIAPRAVPIIGINQG--------------HLGFLT------QIPREYMTDKLLPVLEGK 125 (296)
T ss_pred CCEEEEECCcHHHHHHHHHhcccCCCEEEEecC--------------CCeEee------ccCHHHHHHHHHHHHcCC
Confidence 558999999999999864 47899988311 133222 357788888888888765
No 238
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=55.30 E-value=21 Score=33.86 Aligned_cols=53 Identities=21% Similarity=0.321 Sum_probs=38.2
Q ss_pred cceeeeccChhhHHHHHh----cCCCEEecccccchhhhHHHHHHHHcceEEEecccCCccCHHHHHHHHHHHHcCC
Q 043168 348 ISAFLSHCGWNSVLEALS----HGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAKFELVMNET 420 (473)
Q Consensus 348 ~~~~I~HgG~gs~~eal~----~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ai~~~l~~~ 420 (473)
++++|+=||=||++.++. .++|++++-.. .+|.- -..+.+++.+++.+++++.
T Consensus 65 ~dlvi~lGGDGT~L~aa~~~~~~~~PilGIN~G--------------~lGFL------t~~~~~~~~~~l~~i~~g~ 121 (292)
T PRK01911 65 ADMVISIGGDGTFLRTATYVGNSNIPILGINTG--------------RLGFL------ATVSKEEIEETIDELLNGD 121 (292)
T ss_pred CCEEEEECCcHHHHHHHHHhcCCCCCEEEEecC--------------CCCcc------cccCHHHHHHHHHHHHcCC
Confidence 458999999999998877 37899888321 12222 2356788888888888765
No 239
>PRK14098 glycogen synthase; Provisional
Probab=55.27 E-value=21 Score=36.73 Aligned_cols=41 Identities=12% Similarity=0.152 Sum_probs=31.5
Q ss_pred CCCCCceEEEEcC--------CCccCHHHHHHHHHHHHhCCCcEEEEEcCCc
Q 043168 1 MAQRKENIVMFPL--------MAQGHIIPFLALALHLENTNRYTITFVNTPS 44 (473)
Q Consensus 1 m~~~~~~Il~~~~--------~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~ 44 (473)
|.++++||+|++. |+.|+ -.-.|.++|++ +||+|.++.+.+
T Consensus 1 ~~~~~~~il~v~~E~~p~~k~Ggl~d--v~~~Lp~al~~-~g~~v~v~~P~y 49 (489)
T PRK14098 1 MSRRNFKVLYVSGEVSPFVRVSALAD--FMASFPQALEE-EGFEARIMMPKY 49 (489)
T ss_pred CCCCCcEEEEEeecchhhcccchHHH--HHHHHHHHHHH-CCCeEEEEcCCC
Confidence 5667789999983 34444 45577899999 999999999644
No 240
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=54.90 E-value=53 Score=29.96 Aligned_cols=97 Identities=13% Similarity=0.158 Sum_probs=51.2
Q ss_pred CCceEEEEecCccc---CCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCccchhcccCCchhHHHhhccC-C-CCeEEec
Q 043168 261 CNSVIYVSFGSQNT---IAASQMMQLAMALEACGKNFIWVVKPPLGFDLNSEFRANEWLPEGFEERIKDS-G-QGLVVQK 335 (473)
Q Consensus 261 ~~~~V~vs~GS~~~---~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~v~~~~ 335 (473)
+++.|.|..|+... .+.+.+.++++.|.+.++++++. +... +.. ....+..... . ..+.+..
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~-g~~~------~~~------~~~~~~~~~~~~~~~~~~~~ 170 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLL-GGPE------EQE------KEIADQIAAGLQNPVINLAG 170 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE---SSH------HHH------HHHHHHHHTTHTTTTEEETT
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEE-ccch------HHH------HHHHHHHHHhcccceEeecC
Confidence 45678888887753 45678899999998877665544 3331 100 0111111100 1 1233333
Q ss_pred c--cCh-HHhhcccccceeeeccChhhHHHHHhcCCCEEec
Q 043168 336 W--APQ-VEILSHKSISAFLSHCGWNSVLEALSHGVPIIGW 373 (473)
Q Consensus 336 ~--~p~-~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~i~~ 373 (473)
- +.+ ..++.+++ ++|+. -.|.++=|.+.|+|+|++
T Consensus 171 ~~~l~e~~ali~~a~--~~I~~-Dtg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 171 KTSLRELAALISRAD--LVIGN-DTGPMHLAAALGTPTVAL 208 (247)
T ss_dssp TS-HHHHHHHHHTSS--EEEEE-SSHHHHHHHHTT--EEEE
T ss_pred CCCHHHHHHHHhcCC--EEEec-CChHHHHHHHHhCCEEEE
Confidence 2 233 56777766 78874 567899999999999998
No 241
>PRK07206 hypothetical protein; Provisional
Probab=54.69 E-value=48 Score=33.21 Aligned_cols=33 Identities=12% Similarity=0.064 Sum_probs=24.9
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCC
Q 043168 5 KENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTP 43 (473)
Q Consensus 5 ~~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~ 43 (473)
|++++++-.... ...+++++++ .|++++.++..
T Consensus 2 ~k~~liv~~~~~-----~~~~~~a~~~-~G~~~v~v~~~ 34 (416)
T PRK07206 2 MKKVVIVDPFSS-----GKFLAPAFKK-RGIEPIAVTSS 34 (416)
T ss_pred CCeEEEEcCCch-----HHHHHHHHHH-cCCeEEEEEcC
Confidence 357888876433 3468999999 99998888855
No 242
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=54.10 E-value=56 Score=34.45 Aligned_cols=27 Identities=11% Similarity=0.338 Sum_probs=22.2
Q ss_pred cceeeeccChh------hHHHHHhcCCCEEecc
Q 043168 348 ISAFLSHCGWN------SVLEALSHGVPIIGWP 374 (473)
Q Consensus 348 ~~~~I~HgG~g------s~~eal~~GvP~i~~P 374 (473)
.+++++|.|-| .+.+|...++|+|++-
T Consensus 79 ~gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~It 111 (571)
T PRK07710 79 PGVVIATSGPGATNVVTGLADAMIDSLPLVVFT 111 (571)
T ss_pred CeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 45788898866 5789999999999883
No 243
>PRK08506 replicative DNA helicase; Provisional
Probab=54.00 E-value=67 Score=32.92 Aligned_cols=43 Identities=19% Similarity=0.204 Sum_probs=35.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhh
Q 043168 8 IVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (473)
Q Consensus 8 Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~~ 51 (473)
|++..-|+.|-..=.+.+|..... .|+.|.|++.+-....+..
T Consensus 195 ivIaarpg~GKT~fal~ia~~~~~-~g~~V~~fSlEMs~~ql~~ 237 (472)
T PRK08506 195 IIIAARPSMGKTTLCLNMALKALN-QDKGVAFFSLEMPAEQLML 237 (472)
T ss_pred EEEEcCCCCChHHHHHHHHHHHHh-cCCcEEEEeCcCCHHHHHH
Confidence 466677899999999999998888 8999999998766555544
No 244
>COG1422 Predicted membrane protein [Function unknown]
Probab=53.62 E-value=41 Score=29.64 Aligned_cols=56 Identities=18% Similarity=0.241 Sum_probs=39.5
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHhhhhc
Q 043168 408 NLSAKFELVMNETEKGMDLRKKASEVEMIIKNAVRNEEKFKGSSVKAMEQFLDAALMMKKAQ 469 (473)
Q Consensus 408 ~l~~ai~~~l~~~~~~~~~~~~a~~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 469 (473)
-...-++..+-|-++-+++++.++++++++++|. +.| ....++++-+.=.++...|
T Consensus 59 l~~~i~~~~liD~ekm~~~qk~m~efq~e~~eA~-----~~~-d~~~lkkLq~~qmem~~~Q 114 (201)
T COG1422 59 LYITILQKLLIDQEKMKELQKMMKEFQKEFREAQ-----ESG-DMKKLKKLQEKQMEMMDDQ 114 (201)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH-----HhC-CHHHHHHHHHHHHHHHHHH
Confidence 3445577778887778899999999999999995 333 3666777666544444444
No 245
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=53.32 E-value=30 Score=35.62 Aligned_cols=44 Identities=9% Similarity=0.002 Sum_probs=37.6
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhh
Q 043168 7 NIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (473)
Q Consensus 7 ~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~~ 51 (473)
-+++...|+.|-..=.+.++..... +|..+.|++.++....+..
T Consensus 265 ~~li~G~~G~GKt~l~~~f~~~~~~-~ge~~~y~s~eEs~~~i~~ 308 (484)
T TIGR02655 265 IILATGATGTGKTLLVSKFLENACA-NKERAILFAYEESRAQLLR 308 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEEeeCCHHHHHH
Confidence 4677777899999999999999999 9999999998887666654
No 246
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=53.30 E-value=1.5e+02 Score=26.06 Aligned_cols=98 Identities=12% Similarity=0.053 Sum_probs=55.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCc-----chhhhhhcCCCCCCceEEeccCCCCCCCCCCCCCCCCC
Q 043168 8 IVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPS-----NLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDS 82 (473)
Q Consensus 8 Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~-----~~~~v~~~~~~~~~~~~~~ip~~~~~~~l~~~~~~~~~ 82 (473)
|.+++..+.|-.+..+.+|-+-.- +|.+|.++..=. .......... ..+.|...+ +++.- ...
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~G-hG~rv~vvQFiKg~~~~GE~~~~~~~~--~~v~~~~~~-----~g~tw----~~~ 98 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRALG-HGLRVGVVQFIKGGWKYGEEAALEKFG--LGVEFHGMG-----EGFTW----ETQ 98 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHhc-CCCEEEEEEEeecCcchhHHHHHHhhc--cceeEEecC-----CceeC----CCc
Confidence 778888999998888877766666 888888876211 1122222111 345555444 12211 111
Q ss_pred CCCCCchHHHHHHhhhhHHHHHHHhhhhhccCCCCCeEEEeCCCcc
Q 043168 83 LPFHLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFA 128 (473)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~~ 128 (473)
.+ ..-........+...+.+.+- ++|+||.|-+.+
T Consensus 99 ~~----~~d~~aa~~~w~~a~~~l~~~-------~ydlviLDEl~~ 133 (198)
T COG2109 99 DR----EADIAAAKAGWEHAKEALADG-------KYDLVILDELNY 133 (198)
T ss_pred Cc----HHHHHHHHHHHHHHHHHHhCC-------CCCEEEEehhhH
Confidence 11 111133344445556666666 899999998665
No 247
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=53.15 E-value=35 Score=29.54 Aligned_cols=43 Identities=9% Similarity=-0.068 Sum_probs=35.2
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhh
Q 043168 8 IVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (473)
Q Consensus 8 Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~~ 51 (473)
+++...|+.|-..=.+.++..... .|..|.|++.+...+.+..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~-~g~~v~~~s~e~~~~~~~~ 44 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA-RGEPGLYVTLEESPEELIE 44 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH-CCCcEEEEECCCCHHHHHH
Confidence 567777899999999999988888 9999999998776655443
No 248
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=52.75 E-value=23 Score=31.18 Aligned_cols=44 Identities=7% Similarity=-0.075 Sum_probs=35.0
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhh
Q 043168 6 ENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKLK 50 (473)
Q Consensus 6 ~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~ 50 (473)
+||++.-.|+.|=+.-.+.+.++|++ .|++|.++.++.......
T Consensus 1 ~~I~lgITGs~~a~~a~~~ll~~L~~-~g~~V~vI~S~~A~~~~~ 44 (187)
T TIGR02852 1 KRIGFGLTGSHCTLEAVMPQLEKLVD-EGAEVTPIVSETVQTTDT 44 (187)
T ss_pred CEEEEEEecHHHHHHHHHHHHHHHHh-CcCEEEEEEchhHHHHHH
Confidence 37877777877777777799999999 999999999887654333
No 249
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=52.74 E-value=40 Score=34.32 Aligned_cols=42 Identities=21% Similarity=0.316 Sum_probs=35.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhh
Q 043168 8 IVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKLK 50 (473)
Q Consensus 8 Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~ 50 (473)
+++...|+.|-..=++.++..+.. +|+.|.|++.+.....+.
T Consensus 97 ilI~G~pGsGKTTL~lq~a~~~a~-~g~kvlYvs~EEs~~qi~ 138 (454)
T TIGR00416 97 ILIGGDPGIGKSTLLLQVACQLAK-NQMKVLYVSGEESLQQIK 138 (454)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHh-cCCcEEEEECcCCHHHHH
Confidence 466667899999999999999999 999999999876655543
No 250
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=52.01 E-value=78 Score=26.99 Aligned_cols=100 Identities=13% Similarity=0.033 Sum_probs=54.0
Q ss_pred hhhhhhhccCCCCceEEEEecCcccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCccchhcccCCchhHHHhhccCCC
Q 043168 250 ESCKNWLDTKPCNSVIYVSFGSQNTIAASQMMQLAMALEACGKNFIWVVKPPLGFDLNSEFRANEWLPEGFEERIKDSGQ 329 (473)
Q Consensus 250 ~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (473)
.++-+||.+.. ...|+.|..+ ....+.++..+.+..++-+++... . ....+ ..
T Consensus 21 ~~lg~~La~~g---~~lv~Gg~~G-----lM~a~a~ga~~~gg~viGVlp~~l-----------~-~~~~~-------~~ 73 (159)
T TIGR00725 21 YRLGKELAKKG---HILINGGRTG-----VMEAVSKGAREAGGLVVGILPDED-----------F-AGNPY-------LT 73 (159)
T ss_pred HHHHHHHHHCC---CEEEcCCchh-----HHHHHHHHHHHCCCeEEEECChhh-----------c-cCCCC-------ce
Confidence 45566776653 4555533333 445566666666777766654331 0 00000 11
Q ss_pred CeEEecc-cChHHhhcccccceeeeccChhhHH---HHHhcCCCEEecccc
Q 043168 330 GLVVQKW-APQVEILSHKSISAFLSHCGWNSVL---EALSHGVPIIGWPLA 376 (473)
Q Consensus 330 ~v~~~~~-~p~~~lL~~~~~~~~I~HgG~gs~~---eal~~GvP~i~~P~~ 376 (473)
......+ .+-..++...+-..++--||.||+. |++.+++|+++++..
T Consensus 74 ~~i~~~~~~~Rk~~m~~~sda~IvlpGG~GTL~E~~~a~~~~kpv~~l~~~ 124 (159)
T TIGR00725 74 IKVKTGMNFARNFILVRSADVVVSVGGGYGTAIEILGAYALGGPVVVLRGT 124 (159)
T ss_pred EEEECCCcchHHHHHHHHCCEEEEcCCchhHHHHHHHHHHcCCCEEEEECC
Confidence 1222333 3345555443334666779999876 568899999998753
No 251
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=51.61 E-value=1e+02 Score=30.50 Aligned_cols=33 Identities=15% Similarity=0.194 Sum_probs=27.2
Q ss_pred CceEEEEc-CCCccCHHHHHHHHHHHHhCCCcEEEEEcCC
Q 043168 5 KENIVMFP-LMAQGHIIPFLALALHLENTNRYTITFVNTP 43 (473)
Q Consensus 5 ~~~Il~~~-~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~ 43 (473)
.++|+++. .|..|. .+|..|.. +||+|+++...
T Consensus 98 ~~~I~IiGG~GlmG~-----slA~~l~~-~G~~V~~~d~~ 131 (374)
T PRK11199 98 LRPVVIVGGKGQLGR-----LFAKMLTL-SGYQVRILEQD 131 (374)
T ss_pred cceEEEEcCCChhhH-----HHHHHHHH-CCCeEEEeCCC
Confidence 35899987 787776 68999999 99999999853
No 252
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=51.54 E-value=27 Score=33.46 Aligned_cols=53 Identities=26% Similarity=0.328 Sum_probs=38.5
Q ss_pred cceeeeccChhhHHHHHhc----CCCEEecccccchhhhHHHHHHHHcceEEEecccCCccCHHHHHHHHHHHHcCC
Q 043168 348 ISAFLSHCGWNSVLEALSH----GVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAKFELVMNET 420 (473)
Q Consensus 348 ~~~~I~HgG~gs~~eal~~----GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ai~~~l~~~ 420 (473)
++++|+=||=||++.|... ++|++++... .+|.-. ....+++.+++.+++++.
T Consensus 73 ~D~vi~lGGDGT~L~aar~~~~~~~PilGIN~G--------------~lGFL~------~~~~~~~~~~l~~i~~g~ 129 (306)
T PRK03372 73 CELVLVLGGDGTILRAAELARAADVPVLGVNLG--------------HVGFLA------EAEAEDLDEAVERVVDRD 129 (306)
T ss_pred CCEEEEEcCCHHHHHHHHHhccCCCcEEEEecC--------------CCceec------cCCHHHHHHHHHHHHcCC
Confidence 5589999999999998764 8899988431 233332 346778888888888765
No 253
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=51.09 E-value=27 Score=32.74 Aligned_cols=53 Identities=15% Similarity=0.300 Sum_probs=37.6
Q ss_pred cceeeeccChhhHHHHHh-cCCCEEecccccchhhhHHHHHHHHcceEEEecccCCccCHHHHHHHHHHHHcCC
Q 043168 348 ISAFLSHCGWNSVLEALS-HGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAKFELVMNET 420 (473)
Q Consensus 348 ~~~~I~HgG~gs~~eal~-~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ai~~~l~~~ 420 (473)
++++|+=||-||+..+.. ..+|++.+-. - .+|.- -..+.+++.+++.+++++.
T Consensus 53 ~D~vi~lGGDGT~L~a~~~~~~PilGIN~-------------G-~lGFL------~~~~~~~~~~~l~~i~~g~ 106 (271)
T PRK01185 53 ADVIITIGGDGTILRTLQRAKGPILGINM-------------G-GLGFL------TEIEIDEVGSAIKKLIRGE 106 (271)
T ss_pred CCEEEEEcCcHHHHHHHHHcCCCEEEEEC-------------C-CCccC------cccCHHHHHHHHHHHHcCC
Confidence 558999999999999887 4568877721 0 12222 2356788888888888765
No 254
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=51.09 E-value=1.4e+02 Score=30.52 Aligned_cols=35 Identities=23% Similarity=0.063 Sum_probs=27.4
Q ss_pred HHHHHHHhhhhhccCCCCCeEEEeCCCcchHHHHHHHhCCcEEEE
Q 043168 100 PHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALF 144 (473)
Q Consensus 100 ~~l~~~l~~~~~~~~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~ 144 (473)
..+.++++.. +||++|... ....+|+++|||++.+
T Consensus 385 ~e~~~~i~~~-------~pDl~ig~~---~~~~~a~k~giP~i~~ 419 (456)
T TIGR01283 385 RELLKLLLEY-------KADLLIAGG---KERYTALKLGIPFCDI 419 (456)
T ss_pred HHHHHHHhhc-------CCCEEEEcc---chHHHHHhcCCCEEEc
Confidence 4556778888 999999863 3466788999999876
No 255
>PRK07773 replicative DNA helicase; Validated
Probab=50.85 E-value=74 Score=35.61 Aligned_cols=44 Identities=14% Similarity=0.102 Sum_probs=34.4
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhh
Q 043168 8 IVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (473)
Q Consensus 8 Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~~ 51 (473)
|++..-|+.|-..=.+.+|.......|..|.|++.+-....+..
T Consensus 220 ivIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql~~ 263 (886)
T PRK07773 220 IIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQLVM 263 (886)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHH
Confidence 56677789999999999998876415889999997766665544
No 256
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=50.66 E-value=89 Score=33.05 Aligned_cols=27 Identities=15% Similarity=0.342 Sum_probs=21.9
Q ss_pred cceeeeccChh------hHHHHHhcCCCEEecc
Q 043168 348 ISAFLSHCGWN------SVLEALSHGVPIIGWP 374 (473)
Q Consensus 348 ~~~~I~HgG~g------s~~eal~~GvP~i~~P 374 (473)
.+++++|.|-| .+.+|.+.++|+|++-
T Consensus 64 ~gv~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~ 96 (586)
T PRK06276 64 VGVCVATSGPGATNLVTGIATAYADSSPVIALT 96 (586)
T ss_pred CEEEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 45788888744 7789999999999884
No 257
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=50.60 E-value=1.1e+02 Score=30.74 Aligned_cols=31 Identities=13% Similarity=0.117 Sum_probs=25.3
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCC
Q 043168 7 NIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTP 43 (473)
Q Consensus 7 ~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~ 43 (473)
|+.++..+.. .+.+++.|.+ -|-+|+.+++.
T Consensus 287 kv~v~g~~~~-----~~~l~~~l~e-lGmevv~~~t~ 317 (422)
T TIGR02015 287 RVTVSGYEGS-----ELLVVRLLLE-SGADVPYVGTA 317 (422)
T ss_pred eEEEEcCCcc-----HHHHHHHHHH-CCCEEEEEecC
Confidence 7777776655 8899999999 99999988665
No 258
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=50.50 E-value=86 Score=31.67 Aligned_cols=44 Identities=14% Similarity=0.135 Sum_probs=34.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhh
Q 043168 8 IVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (473)
Q Consensus 8 Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~~ 51 (473)
+++...|+.|-..=.+.+|..+....|+.|.|++.+-....+..
T Consensus 198 ~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i~~ 241 (434)
T TIGR00665 198 IILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQLAM 241 (434)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHHHH
Confidence 46667789999999999998875415999999998776655543
No 259
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=50.30 E-value=71 Score=29.42 Aligned_cols=23 Identities=9% Similarity=0.005 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhCCCcEEEEEcCCc
Q 043168 21 PFLALALHLENTNRYTITFVNTPS 44 (473)
Q Consensus 21 P~l~LA~~L~~~rGh~Vt~~~~~~ 44 (473)
-.-.|+++|++ .||+|+++++..
T Consensus 21 v~~~L~kaL~~-~G~~V~Vi~P~y 43 (245)
T PF08323_consen 21 VVGSLPKALAK-QGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHH-TT-EEEEEEE-T
T ss_pred HHHHHHHHHHh-cCCeEEEEEccc
Confidence 45678999999 999999999654
No 260
>PRK08322 acetolactate synthase; Reviewed
Probab=50.18 E-value=84 Score=32.87 Aligned_cols=27 Identities=26% Similarity=0.282 Sum_probs=22.1
Q ss_pred cceeeeccChh------hHHHHHhcCCCEEecc
Q 043168 348 ISAFLSHCGWN------SVLEALSHGVPIIGWP 374 (473)
Q Consensus 348 ~~~~I~HgG~g------s~~eal~~GvP~i~~P 374 (473)
.+++++|.|-| .+.+|...++|+|++-
T Consensus 64 ~gv~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~ 96 (547)
T PRK08322 64 AGVCLSTLGPGATNLVTGVAYAQLGGMPMVAIT 96 (547)
T ss_pred CEEEEECCCccHhHHHHHHHHHhhcCCCEEEEe
Confidence 45788888854 7789999999999984
No 261
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=49.77 E-value=48 Score=29.88 Aligned_cols=44 Identities=11% Similarity=0.088 Sum_probs=34.9
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhh
Q 043168 7 NIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (473)
Q Consensus 7 ~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~~ 51 (473)
-+++...|+.|-..=.+.++..... +|+.|.|++.+.....+..
T Consensus 18 ~~li~G~~G~GKt~~~~~~~~~~~~-~g~~~~y~s~e~~~~~l~~ 61 (224)
T TIGR03880 18 VIVVIGEYGTGKTTFSLQFLYQGLK-NGEKAMYISLEEREERILG 61 (224)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh-CCCeEEEEECCCCHHHHHH
Confidence 3566666799998888888888778 8999999998876666554
No 262
>PRK05636 replicative DNA helicase; Provisional
Probab=49.74 E-value=45 Score=34.49 Aligned_cols=42 Identities=7% Similarity=0.018 Sum_probs=32.3
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCcEEEEEcCCcchhhhh
Q 043168 8 IVMFPLMAQGHIIPFLALALHLE-NTNRYTITFVNTPSNLKKLK 50 (473)
Q Consensus 8 Il~~~~~~~GHv~P~l~LA~~L~-~~rGh~Vt~~~~~~~~~~v~ 50 (473)
|++..-|+.|-..=.+.+|.... + .|..|.|++.+-....+.
T Consensus 268 iiiaarpg~GKT~~al~~a~~~a~~-~g~~v~~fSlEMs~~ql~ 310 (505)
T PRK05636 268 IIVAARPGVGKSTLALDFMRSASIK-HNKASVIFSLEMSKSEIV 310 (505)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEEeeCCHHHHH
Confidence 46677789999999999998765 5 688999998766554443
No 263
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=49.51 E-value=1.4e+02 Score=29.80 Aligned_cols=98 Identities=16% Similarity=0.107 Sum_probs=58.5
Q ss_pred CCceEEEEecCcccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCccchhcccCCchhHHHhhccCCCCeEEecccChH
Q 043168 261 CNSVIYVSFGSQNTIAASQMMQLAMALEACGKNFIWVVKPPLGFDLNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQV 340 (473)
Q Consensus 261 ~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 340 (473)
+||.|-+|+ ......-+..+.+.|++.|+.+++....+. .-.-.|++-+...---+.+.-..
T Consensus 184 ~kp~I~iTm---fGvTTp~V~~~~~~Le~~G~Ev~VFHAtG~--------------GG~aME~Li~~G~~~~VlDlTtt- 245 (403)
T PF06792_consen 184 DKPLIGITM---FGVTTPCVDAIRERLEEEGYEVLVFHATGT--------------GGRAMERLIREGQFDGVLDLTTT- 245 (403)
T ss_pred CCcEEEEEC---CCCcHHHHHHHHHHHHhcCCeEEEEcCCCC--------------chHHHHHHHHcCCcEEEEECcHH-
Confidence 567787743 333446678888889898999988866552 11112222100111112233222
Q ss_pred HhhcccccceeeeccChhhHHHHHhcCCCEEecccccc
Q 043168 341 EILSHKSISAFLSHCGWNSVLEALSHGVPIIGWPLAAE 378 (473)
Q Consensus 341 ~lL~~~~~~~~I~HgG~gs~~eal~~GvP~i~~P~~~D 378 (473)
++-.+ +-.-|..+|-.=+-.|...|+|+|+.|-..|
T Consensus 246 El~d~--l~GGv~sagp~Rl~AA~~~GIP~Vvs~GalD 281 (403)
T PF06792_consen 246 ELADE--LFGGVLSAGPDRLEAAARAGIPQVVSPGALD 281 (403)
T ss_pred HHHHH--HhCCCCCCCchHHHHHHHcCCCEEEecCccc
Confidence 22222 2234777888999999999999999997555
No 264
>PRK11823 DNA repair protein RadA; Provisional
Probab=49.32 E-value=39 Score=34.38 Aligned_cols=42 Identities=14% Similarity=0.163 Sum_probs=35.3
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhh
Q 043168 8 IVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKLK 50 (473)
Q Consensus 8 Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~ 50 (473)
+++...|+.|-..=++.+|..+.. +|+.|.|++.+.....+.
T Consensus 83 ~lI~G~pG~GKTtL~lq~a~~~a~-~g~~vlYvs~Ees~~qi~ 124 (446)
T PRK11823 83 VLIGGDPGIGKSTLLLQVAARLAA-AGGKVLYVSGEESASQIK 124 (446)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEEEccccHHHHH
Confidence 466677899999999999999998 899999999887665553
No 265
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=48.92 E-value=34 Score=31.83 Aligned_cols=53 Identities=19% Similarity=0.241 Sum_probs=36.7
Q ss_pred cceeeeccChhhHHHHHh-cCCCEEecccccchhhhHHHHHHHHcceEEEecccCCccCHHHHHHHHHHHHcCC
Q 043168 348 ISAFLSHCGWNSVLEALS-HGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAKFELVMNET 420 (473)
Q Consensus 348 ~~~~I~HgG~gs~~eal~-~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ai~~~l~~~ 420 (473)
++++|+=||-||+..|+. +++|++.+-.. .+|.. ...+.+++.+++.++++..
T Consensus 42 ~d~vi~iGGDGT~L~a~~~~~~Pilgin~G--------------~lGfl------~~~~~~~~~~~l~~~~~g~ 95 (256)
T PRK14075 42 ADLIIVVGGDGTVLKAAKKVGTPLVGFKAG--------------RLGFL------SSYTLEEIDRFLEDLKNWN 95 (256)
T ss_pred CCEEEEECCcHHHHHHHHHcCCCEEEEeCC--------------CCccc------cccCHHHHHHHHHHHHcCC
Confidence 558999999999998876 58888877311 12222 2346677778887777655
No 266
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=48.33 E-value=1.6e+02 Score=30.97 Aligned_cols=27 Identities=11% Similarity=0.249 Sum_probs=21.5
Q ss_pred cceeeeccChh------hHHHHHhcCCCEEecc
Q 043168 348 ISAFLSHCGWN------SVLEALSHGVPIIGWP 374 (473)
Q Consensus 348 ~~~~I~HgG~g------s~~eal~~GvP~i~~P 374 (473)
..++++|.|-| .+++|...++|+|++.
T Consensus 77 ~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 77 PAVCMACSGPGATNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred CeEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 44677787754 7889999999999984
No 267
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=47.78 E-value=12 Score=38.13 Aligned_cols=59 Identities=12% Similarity=0.161 Sum_probs=40.0
Q ss_pred eccChhhHHHHHhcCCCEEecccccchhhhHHHHHHHHcceEEEecccCCccCHHHHHHHHHHHHcCC
Q 043168 353 SHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAKFELVMNET 420 (473)
Q Consensus 353 ~HgG~gs~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ai~~~l~~~ 420 (473)
-|-|. ++.||.++|.|+|+.= +..-+..|+.. --|...++ ..-....+++++.++..|+
T Consensus 376 E~FGi-v~IEAMa~glPvvAt~----~GGP~EiV~~~-~tG~l~dp---~~e~~~~~a~~~~kl~~~p 434 (495)
T KOG0853|consen 376 EHFGI-VPIEAMACGLPVVATN----NGGPAEIVVHG-VTGLLIDP---GQEAVAELADALLKLRRDP 434 (495)
T ss_pred CCccc-eeHHHHhcCCCEEEec----CCCceEEEEcC-CcceeeCC---chHHHHHHHHHHHHHhcCH
Confidence 44554 7889999999999873 33333334422 45666665 3333447999999999999
No 268
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=47.74 E-value=29 Score=32.97 Aligned_cols=53 Identities=13% Similarity=0.142 Sum_probs=37.9
Q ss_pred cceeeeccChhhHHHHHh----cCCCEEecccccchhhhHHHHHHHHcceEEEecccCCccCHHHHHHHHHHHHcCC
Q 043168 348 ISAFLSHCGWNSVLEALS----HGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAKFELVMNET 420 (473)
Q Consensus 348 ~~~~I~HgG~gs~~eal~----~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ai~~~l~~~ 420 (473)
++++|+=||=||+..++. .++|++.+-.. .+|.- ..++++++.+++++++++.
T Consensus 64 ~d~vi~lGGDGT~L~aa~~~~~~~~Pilgin~G--------------~lGFl------~~~~~~~~~~~l~~i~~g~ 120 (292)
T PRK03378 64 ADLAIVVGGDGNMLGAARVLARYDIKVIGINRG--------------NLGFL------TDLDPDNALQQLSDVLEGH 120 (292)
T ss_pred CCEEEEECCcHHHHHHHHHhcCCCCeEEEEECC--------------CCCcc------cccCHHHHHHHHHHHHcCC
Confidence 558999999999999975 37888887321 12322 2356788888888888765
No 269
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=47.72 E-value=47 Score=27.44 Aligned_cols=43 Identities=14% Similarity=0.156 Sum_probs=36.8
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhh
Q 043168 6 ENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKL 49 (473)
Q Consensus 6 ~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v 49 (473)
.+|++-+..+-+|-.----++..|.. .|++|+........+.+
T Consensus 2 ~~vvigtv~~D~HdiGk~iv~~~l~~-~GfeVi~LG~~v~~e~~ 44 (134)
T TIGR01501 2 KTIVLGVIGSDCHAVGNKILDHAFTN-AGFNVVNLGVLSPQEEF 44 (134)
T ss_pred CeEEEEEecCChhhHhHHHHHHHHHH-CCCEEEECCCCCCHHHH
Confidence 58999999999999999999999999 99999999865443333
No 270
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=47.67 E-value=36 Score=31.78 Aligned_cols=54 Identities=15% Similarity=0.233 Sum_probs=36.4
Q ss_pred cceeeeccChhhHHHHHhc-----CCCEEecccccchhhhHHHHHHHHcceEEEecccCCccCHHHHHHHHHHHHcCC
Q 043168 348 ISAFLSHCGWNSVLEALSH-----GVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAKFELVMNET 420 (473)
Q Consensus 348 ~~~~I~HgG~gs~~eal~~-----GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ai~~~l~~~ 420 (473)
++++|+=||=||++.|+.. .+|++.+-..+ .+|.- ...+.+++.+++.++++++
T Consensus 40 ~D~vi~lGGDGT~L~a~~~~~~~~~~pilgIn~~G-------------~lGFL------~~~~~~~~~~~l~~i~~g~ 98 (264)
T PRK03501 40 ANIIVSIGGDGTFLQAVRKTGFREDCLYAGISTKD-------------QLGFY------CDFHIDDLDKMIQAITKEE 98 (264)
T ss_pred ccEEEEECCcHHHHHHHHHhcccCCCeEEeEecCC-------------CCeEc------ccCCHHHHHHHHHHHHcCC
Confidence 4589999999999999874 56777763200 12222 2356677888888777655
No 271
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=46.89 E-value=66 Score=28.06 Aligned_cols=35 Identities=20% Similarity=0.189 Sum_probs=24.4
Q ss_pred EEEcCCCccCHHHHHHHHHHHHhC-CCcEEEEEcCC
Q 043168 9 VMFPLMAQGHIIPFLALALHLENT-NRYTITFVNTP 43 (473)
Q Consensus 9 l~~~~~~~GHv~P~l~LA~~L~~~-rGh~Vt~~~~~ 43 (473)
.++-.|+.||..=++.|-+.|.+. .+-....+.++
T Consensus 41 ~lVvlGSGGHT~EMlrLl~~l~~~y~~r~yI~a~tD 76 (211)
T KOG3339|consen 41 TLVVLGSGGHTGEMLRLLEALQDLYSPRSYIAADTD 76 (211)
T ss_pred EEEEEcCCCcHHHHHHHHHHHHhhcCceEEEEecCc
Confidence 445568999999999999999774 34333344444
No 272
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=46.78 E-value=26 Score=28.82 Aligned_cols=33 Identities=21% Similarity=0.367 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhhc
Q 043168 19 IIPFLALALHLENTNRYTITFVNTPSNLKKLKSS 52 (473)
Q Consensus 19 v~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~~~ 52 (473)
+.-.+=++..|++ +||+|++++++...++++-+
T Consensus 13 ~p~alYl~~~Lk~-~G~~v~Va~npAA~kLl~va 45 (139)
T PF09001_consen 13 TPSALYLSYKLKK-KGFEVVVAGNPAALKLLEVA 45 (139)
T ss_dssp HHHHHHHHHHHHC-TTEEEEEEE-HHHHHHHHHH
T ss_pred hHHHHHHHHHHHh-cCCeEEEecCHHHHhHhhhc
Confidence 3446778999999 99999999999998888764
No 273
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=46.76 E-value=1.6e+02 Score=30.96 Aligned_cols=26 Identities=19% Similarity=0.222 Sum_probs=21.6
Q ss_pred cceeeeccChh------hHHHHHhcCCCEEec
Q 043168 348 ISAFLSHCGWN------SVLEALSHGVPIIGW 373 (473)
Q Consensus 348 ~~~~I~HgG~g------s~~eal~~GvP~i~~ 373 (473)
..++++|.|-| .+++|...++|+|++
T Consensus 72 ~gv~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i 103 (557)
T PRK08199 72 PGICFVTRGPGATNASIGVHTAFQDSTPMILF 103 (557)
T ss_pred CEEEEeCCCccHHHHHHHHHHHhhcCCCEEEE
Confidence 45788888855 678999999999987
No 274
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=46.61 E-value=19 Score=30.60 Aligned_cols=32 Identities=25% Similarity=0.227 Sum_probs=27.7
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCc
Q 043168 7 NIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPS 44 (473)
Q Consensus 7 ~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~ 44 (473)
||.++..|.+|+ ++|..|.. +||+|++.+.+.
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~-~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLAD-NGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHH-CTEEEEEETSCH
T ss_pred CEEEECcCHHHH-----HHHHHHHH-cCCEEEEEeccH
Confidence 578888888887 78999999 999999999764
No 275
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=46.35 E-value=1.2e+02 Score=28.10 Aligned_cols=37 Identities=22% Similarity=0.085 Sum_probs=25.1
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcch
Q 043168 7 NIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNL 46 (473)
Q Consensus 7 ~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~ 46 (473)
|||+.---+. |.--+.+|+++|.. . |+|+++.+...+
T Consensus 2 ~ILlTNDDGi-~a~Gi~aL~~~l~~-~-~~V~VvAP~~~q 38 (250)
T PRK00346 2 RILLTNDDGI-HAPGIRALAEALRE-L-ADVTVVAPDRER 38 (250)
T ss_pred eEEEECCCCC-CChhHHHHHHHHHh-C-CCEEEEeCCCCC
Confidence 5555543332 33447788999999 8 799999966544
No 276
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=46.31 E-value=1.5e+02 Score=30.37 Aligned_cols=34 Identities=18% Similarity=0.125 Sum_probs=26.5
Q ss_pred HHHHHHhhhhhccCCCCCeEEEeCCCcchHHHHHHHhCCcEEEE
Q 043168 101 HFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALF 144 (473)
Q Consensus 101 ~l~~~l~~~~~~~~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~ 144 (473)
.+.++++.. +||++|.. .....+|+++|||++..
T Consensus 384 e~~~~i~~~-------~pDliig~---s~~~~~a~k~giP~~~~ 417 (475)
T PRK14478 384 ELYKMLKEA-------KADIMLSG---GRSQFIALKAGMPWLDI 417 (475)
T ss_pred HHHHHHhhc-------CCCEEEec---CchhhhhhhcCCCEEEc
Confidence 345666777 99999997 44668899999999844
No 277
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=46.21 E-value=58 Score=31.32 Aligned_cols=31 Identities=23% Similarity=0.282 Sum_probs=23.1
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCC
Q 043168 7 NIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTP 43 (473)
Q Consensus 7 ~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~ 43 (473)
||+|+..+..+ +...++|.+ +||+|..+.+.
T Consensus 2 kIvf~Gs~~~a-----~~~L~~L~~-~~~~i~~Vvt~ 32 (313)
T TIGR00460 2 RIVFFGTPTFS-----LPVLEELRE-DNFEVVGVVTQ 32 (313)
T ss_pred EEEEECCCHHH-----HHHHHHHHh-CCCcEEEEEcC
Confidence 88888766543 566788899 99998766654
No 278
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=46.13 E-value=2.5e+02 Score=26.02 Aligned_cols=80 Identities=19% Similarity=0.339 Sum_probs=51.7
Q ss_pred CCeEEecccCh---HHhhcccccceeeec---cChhh-HHHHHhcCCCEEecccccchhhhHHHHHHHHcceEEEecccC
Q 043168 329 QGLVVQKWAPQ---VEILSHKSISAFLSH---CGWNS-VLEALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMN 401 (473)
Q Consensus 329 ~~v~~~~~~p~---~~lL~~~~~~~~I~H---gG~gs-~~eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~ 401 (473)
.++....+++. ..++..++ +++.. .|.|. +.||+++|+|+|.... ......+... +.|. +..
T Consensus 257 ~~v~~~g~~~~~~~~~~~~~~~--~~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~----~~~~e~~~~~-~~g~-~~~--- 325 (381)
T COG0438 257 DNVKFLGYVPDEELAELLASAD--VFVLPSLSEGFGLVLLEAMAAGTPVIASDV----GGIPEVVEDG-ETGL-LVP--- 325 (381)
T ss_pred CcEEEecccCHHHHHHHHHhCC--EEEeccccccchHHHHHHHhcCCcEEECCC----CChHHHhcCC-CceE-ecC---
Confidence 66777788882 34566555 45555 35543 5999999999977643 3223333322 2476 433
Q ss_pred CccCHHHHHHHHHHHHcCC
Q 043168 402 CEVSKENLSAKFELVMNET 420 (473)
Q Consensus 402 ~~~~~~~l~~ai~~~l~~~ 420 (473)
....+.+.+++..++++.
T Consensus 326 -~~~~~~~~~~i~~~~~~~ 343 (381)
T COG0438 326 -PGDVEELADALEQLLEDP 343 (381)
T ss_pred -CCCHHHHHHHHHHHhcCH
Confidence 126899999999999887
No 279
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=45.84 E-value=35 Score=30.29 Aligned_cols=40 Identities=18% Similarity=0.014 Sum_probs=28.8
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhh
Q 043168 7 NIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKK 48 (473)
Q Consensus 7 ~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~ 48 (473)
|||+.---+. +-.-+..|+++|.+ .||+|+++.+...+..
T Consensus 2 ~ILlTNDDGi-~a~Gi~aL~~~L~~-~g~~V~VvAP~~~~Sg 41 (196)
T PF01975_consen 2 RILLTNDDGI-DAPGIRALAKALSA-LGHDVVVVAPDSEQSG 41 (196)
T ss_dssp EEEEE-SS-T-TSHHHHHHHHHHTT-TSSEEEEEEESSSTTT
T ss_pred eEEEEcCCCC-CCHHHHHHHHHHHh-cCCeEEEEeCCCCCcC
Confidence 6777665555 44567889999988 8999999997765443
No 280
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=45.82 E-value=84 Score=28.98 Aligned_cols=103 Identities=16% Similarity=0.061 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhhcCCCCCCceEEeccCCCCCCCCCCCCCCCCCCCCCCchHHHHHHhh
Q 043168 18 HIIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLPFHLFPNFFESTLS 97 (473)
Q Consensus 18 Hv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~ip~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 97 (473)
|.--+.+|+++|+. .| +|+++.+...+.-......-...+++..++ .......-.....|.+....-+..+-.
T Consensus 12 ~a~Gi~aL~~~l~~-~g-~V~VvAP~~~~Sg~g~ait~~~pl~~~~~~-----~~~~~~~~~v~GTPaDcv~~gl~~l~~ 84 (244)
T TIGR00087 12 HSPGIRALYQALKE-LG-EVTVVAPARQRSGTGHSLTLFEPLRVGQVK-----VKNGAHIYAVDGTPTDCVILGINELMP 84 (244)
T ss_pred CCHhHHHHHHHHHh-CC-CEEEEeCCCCccccccCcCCCCCeEEEEec-----cCCCccEEEEcCcHHHHHHHHHHHhcc
Q ss_pred hhHHHHHHHhhhhhccCCCCCeEEE----------eCCCcc---hHHHHHHHhCCcEEEEc
Q 043168 98 FKPHFRKLINGLIDEQNGHKPVCII----------ADMFFA---WSAEIAQEYGIFNALFV 145 (473)
Q Consensus 98 ~~~~l~~~l~~~~~~~~~~~pDlVI----------~D~~~~---~~~~~A~~~giP~v~~~ 145 (473)
. +||+|| .|.+.+ .|+.-|..+|||.+.++
T Consensus 85 ~------------------~pDLVvSGiN~G~N~g~~v~ySGTVgAA~ea~~~GipaiA~S 127 (244)
T TIGR00087 85 E------------------VPDLVISGINAGENLGTDVTYSGTVGAAMEAAIHGVPAIAIS 127 (244)
T ss_pred C------------------CCCeEEeccccCCCCCccEecchhHHHHHHHHHcCCCeEEEE
No 281
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=45.21 E-value=1.9e+02 Score=27.33 Aligned_cols=103 Identities=8% Similarity=0.039 Sum_probs=57.6
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhC-CCcEEEEEcC-C-cchhhhhhcCCCCCCceEEeccCCCCCCCCCCCCCCC
Q 043168 4 RKENIVMFPLMAQGHIIPFLALALHLENT-NRYTITFVNT-P-SNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENS 80 (473)
Q Consensus 4 ~~~~Il~~~~~~~GHv~P~l~LA~~L~~~-rGh~Vt~~~~-~-~~~~~v~~~~~~~~~~~~~~ip~~~~~~~l~~~~~~~ 80 (473)
+++||+++..+.... +.+|.++.... .+++|..+.+ . ......+. .++.+..++.. +.
T Consensus 88 ~~~ri~vl~Sg~g~n---l~al~~~~~~~~~~~~i~~visn~~~~~~lA~~-----~gIp~~~~~~~------~~----- 148 (286)
T PRK13011 88 ARPKVLIMVSKFDHC---LNDLLYRWRIGELPMDIVGVVSNHPDLEPLAAW-----HGIPFHHFPIT------PD----- 148 (286)
T ss_pred cCceEEEEEcCCccc---HHHHHHHHHcCCCCcEEEEEEECCccHHHHHHH-----hCCCEEEeCCC------cC-----
Confidence 567999999885333 34444554442 4688777643 3 34444444 45565544411 00
Q ss_pred CCCCCCCchHHHHHHhhhhHHHHHHHhhhhhccCCCCCeEEEeCCCcc-hHHHHHHHhCCcEEEEc
Q 043168 81 DSLPFHLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFA-WSAEIAQEYGIFNALFV 145 (473)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~~-~~~~~A~~~giP~v~~~ 145 (473)
........+.++++++ +||+||.-.+.. ....+.+.+.-.++-+.
T Consensus 149 -------------~~~~~~~~~~~~l~~~-------~~Dlivlagy~~il~~~~l~~~~~~iiNiH 194 (286)
T PRK13011 149 -------------TKPQQEAQVLDVVEES-------GAELVVLARYMQVLSPELCRKLAGRAINIH 194 (286)
T ss_pred -------------chhhhHHHHHHHHHHh-------CcCEEEEeChhhhCCHHHHhhccCCeEEec
Confidence 0011223456778888 999998766544 44555666655566653
No 282
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=45.18 E-value=1.3e+02 Score=27.81 Aligned_cols=102 Identities=14% Similarity=0.073 Sum_probs=58.4
Q ss_pred HHHHHHHHHhCCCcEEEEEcCCcchhhhhhcCCCCCCceEEeccCCCCCC-----CCCCCCCCCCCCCCCCchHHHHHHh
Q 043168 22 FLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAH-----DLPPCTENSDSLPFHLFPNFFESTL 96 (473)
Q Consensus 22 ~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~ip~~~~~~-----~l~~~~~~~~~~~~~~~~~~~~~~~ 96 (473)
+-.+++.+.. .|-+|.+.++..+...+...... ..+-++-+|.+.... +++....-.... .
T Consensus 117 ~~ea~~~~~~-~~~rVflt~G~~~l~~f~~~~~~-~~~~~Rvlp~~~~~~~~~~~~~p~~~Iia~~G------------P 182 (257)
T COG2099 117 IEEAAEAAKQ-LGRRVFLTTGRQNLAHFVAADAH-SHVLARVLPPPDVLAKCEDLGVPPARIIAMRG------------P 182 (257)
T ss_pred HHHHHHHHhc-cCCcEEEecCccchHHHhcCccc-ceEEEEEcCchHHHHHHHhcCCChhhEEEecC------------C
Confidence 3456677777 77777777777777666654431 245555555432111 122111000111 2
Q ss_pred hhhHHHHHHHhhhhhccCCCCCeEEEeCCCc-----chHHHHHHHhCCcEEEE
Q 043168 97 SFKPHFRKLINGLIDEQNGHKPVCIIADMFF-----AWSAEIAQEYGIFNALF 144 (473)
Q Consensus 97 ~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~-----~~~~~~A~~~giP~v~~ 144 (473)
...+.=..+++.+ +.|+||.=..- ..=..+|+++|||+|.+
T Consensus 183 fs~~~n~all~q~-------~id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I 228 (257)
T COG2099 183 FSEEDNKALLEQY-------RIDVVVTKNSGGAGGTYEKIEAARELGIPVIMI 228 (257)
T ss_pred cChHHHHHHHHHh-------CCCEEEEccCCcccCcHHHHHHHHHcCCcEEEE
Confidence 2233446788889 99999964322 22357999999999998
No 283
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=45.17 E-value=34 Score=34.82 Aligned_cols=31 Identities=16% Similarity=0.263 Sum_probs=20.6
Q ss_pred CCeEEEeCCCcc--hHHHHHHHhCCcEEEEccc
Q 043168 117 KPVCIIADMFFA--WSAEIAQEYGIFNALFVGG 147 (473)
Q Consensus 117 ~pDlVI~D~~~~--~~~~~A~~~giP~v~~~~~ 147 (473)
+||+|+.....- .|.++++++|||.....++
T Consensus 401 ~PdlI~GnYsDgnlvA~LLs~~lgv~~~~iaHs 433 (550)
T PF00862_consen 401 KPDLIIGNYSDGNLVASLLSRKLGVTQCFIAHS 433 (550)
T ss_dssp --SEEEEEHHHHHHHHHHHHHHHT-EEEEE-SS
T ss_pred CCcEEEeccCcchHHHHHHHhhcCCceehhhhc
Confidence 899999765433 5778999999998876433
No 284
>PRK13768 GTPase; Provisional
Probab=45.01 E-value=55 Score=30.36 Aligned_cols=37 Identities=22% Similarity=0.267 Sum_probs=31.6
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCc
Q 043168 7 NIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPS 44 (473)
Q Consensus 7 ~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~ 44 (473)
-+++...++.|-.+=...++..|.. .|++|.++....
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~-~g~~v~~i~~D~ 40 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEE-QGYDVAIVNLDP 40 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHh-cCCceEEEECCC
Confidence 5667777899999999999999999 999999997553
No 285
>PLN02929 NADH kinase
Probab=44.74 E-value=32 Score=32.78 Aligned_cols=65 Identities=11% Similarity=0.170 Sum_probs=42.1
Q ss_pred cceeeeccChhhHHHHHh---cCCCEEecccccc------hhhhHHHHHHHHcceEEEecccCCccCHHHHHHHHHHHHc
Q 043168 348 ISAFLSHCGWNSVLEALS---HGVPIIGWPLAAE------QFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAKFELVMN 418 (473)
Q Consensus 348 ~~~~I~HgG~gs~~eal~---~GvP~i~~P~~~D------Q~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ai~~~l~ 418 (473)
++++|+-||=||++.|.. .++|++++=...- ++.+.-. +.. .+|... ..+.+++.+++.++++
T Consensus 65 ~Dlvi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~-~~r-~lGfL~------~~~~~~~~~~L~~il~ 136 (301)
T PLN02929 65 VDLVVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFD-ARR-STGHLC------AATAEDFEQVLDDVLF 136 (301)
T ss_pred CCEEEEECCcHHHHHHHHHcCCCCcEEEEECCCcccccccccccccc-ccc-Cccccc------cCCHHHHHHHHHHHHc
Confidence 558999999999998854 4789988754311 1111110 111 244433 3578899999999997
Q ss_pred CC
Q 043168 419 ET 420 (473)
Q Consensus 419 ~~ 420 (473)
+.
T Consensus 137 g~ 138 (301)
T PLN02929 137 GR 138 (301)
T ss_pred CC
Confidence 75
No 286
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=44.69 E-value=1.6e+02 Score=27.41 Aligned_cols=39 Identities=15% Similarity=0.146 Sum_probs=32.8
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcch
Q 043168 7 NIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNL 46 (473)
Q Consensus 7 ~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~ 46 (473)
-+++...|+.|-..=.+.+|..... +|..|.|++.+...
T Consensus 38 ~~lI~G~pGtGKT~l~~qf~~~~a~-~Ge~vlyis~Ee~~ 76 (259)
T TIGR03878 38 VINITGVSDTGKSLMVEQFAVTQAS-RGNPVLFVTVESPA 76 (259)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh-CCCcEEEEEecCCc
Confidence 3567777899999999999998888 89999999987533
No 287
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=44.42 E-value=1.3e+02 Score=29.13 Aligned_cols=33 Identities=24% Similarity=0.148 Sum_probs=23.9
Q ss_pred CCeEEE-eCCCcc-hHHHHHHHhCCcEEEEccccH
Q 043168 117 KPVCII-ADMFFA-WSAEIAQEYGIFNALFVGGGS 149 (473)
Q Consensus 117 ~pDlVI-~D~~~~-~~~~~A~~~giP~v~~~~~~~ 149 (473)
.||+|| .|...- .+..=|.++|||.|.+.-+.+
T Consensus 152 ~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn~ 186 (326)
T PRK12311 152 LPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTNC 186 (326)
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCCC
Confidence 599766 455433 677789999999999855543
No 288
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=43.66 E-value=43 Score=31.91 Aligned_cols=53 Identities=21% Similarity=0.300 Sum_probs=38.0
Q ss_pred cceeeeccChhhHHHHHh----cCCCEEecccccchhhhHHHHHHHHcceEEEecccCCccCHHHHHHHHHHHHcCC
Q 043168 348 ISAFLSHCGWNSVLEALS----HGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAKFELVMNET 420 (473)
Q Consensus 348 ~~~~I~HgG~gs~~eal~----~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ai~~~l~~~ 420 (473)
.+++|+=||-||+.+++. .++|++.+... .+|.- ...+.+++.++|.++++++
T Consensus 63 ~d~vi~~GGDGt~l~~~~~~~~~~~Pvlgin~G--------------~lGFl------~~~~~~~~~~~l~~~~~g~ 119 (295)
T PRK01231 63 CDLVIVVGGDGSLLGAARALARHNVPVLGINRG--------------RLGFL------TDIRPDELEFKLAEVLDGH 119 (295)
T ss_pred CCEEEEEeCcHHHHHHHHHhcCCCCCEEEEeCC--------------ccccc------ccCCHHHHHHHHHHHHcCC
Confidence 458999999999999875 37788888431 12211 2456788888888888765
No 289
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=43.63 E-value=70 Score=31.47 Aligned_cols=81 Identities=20% Similarity=0.190 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCccchhcccCCchhHH-----------HhhccCCCCeEEecccCh---HH
Q 043168 276 AASQMMQLAMALEACGKNFIWVVKPPLGFDLNSEFRANEWLPEGFE-----------ERIKDSGQGLVVQKWAPQ---VE 341 (473)
Q Consensus 276 ~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~v~~~~~~p~---~~ 341 (473)
...-+..++++++..+.++...+..+. ....+. +....+.-.+.+.+|+|| +.
T Consensus 193 e~~~l~~ll~~~~~~~~pv~llvp~g~-------------~~~~~~~~~~~~~~~~g~~~~~g~l~l~~lPF~~Q~~yD~ 259 (374)
T PF10093_consen 193 ENAALASLLDAWAASPKPVHLLVPEGR-------------ALNSLAAWLGDALLQAGDSWQRGNLTLHVLPFVPQDDYDR 259 (374)
T ss_pred CchHHHHHHHHHhcCCCCeEEEecCCc-------------cHHHHHHHhccccccCccccccCCeEEEECCCCCHHHHHH
Confidence 445577777777776666665555441 111110 001111345667889998 56
Q ss_pred hhcccccceeeeccChhhHHHHHhcCCCEEe
Q 043168 342 ILSHKSISAFLSHCGWNSVLEALSHGVPIIG 372 (473)
Q Consensus 342 lL~~~~~~~~I~HgG~gs~~eal~~GvP~i~ 372 (473)
+|-.|++ .|| =|-=|+..|..+|+|.|=
T Consensus 260 LLw~cD~-NfV--RGEDSfVRAqwAgkPFvW 287 (374)
T PF10093_consen 260 LLWACDF-NFV--RGEDSFVRAQWAGKPFVW 287 (374)
T ss_pred HHHhCcc-ceE--ecchHHHHHHHhCCCceE
Confidence 8888886 344 367799999999999874
No 290
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=43.34 E-value=59 Score=32.72 Aligned_cols=43 Identities=16% Similarity=0.167 Sum_probs=34.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCcEEEEEcCCcchhhhhh
Q 043168 8 IVMFPLMAQGHIIPFLALALHLE-NTNRYTITFVNTPSNLKKLKS 51 (473)
Q Consensus 8 Il~~~~~~~GHv~P~l~LA~~L~-~~rGh~Vt~~~~~~~~~~v~~ 51 (473)
+++...|+.|-..=.+.+|..+. . .|+.|.|++.+-....+..
T Consensus 197 iviag~pg~GKT~~al~ia~~~a~~-~g~~v~~fSlEm~~~~l~~ 240 (421)
T TIGR03600 197 IVIGARPSMGKTTLALNIAENVALR-EGKPVLFFSLEMSAEQLGE 240 (421)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCCCHHHHHH
Confidence 46667789999999999998876 7 7999999997765555543
No 291
>PRK06988 putative formyltransferase; Provisional
Probab=43.32 E-value=1.6e+02 Score=28.22 Aligned_cols=33 Identities=15% Similarity=0.058 Sum_probs=23.6
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCc
Q 043168 6 ENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPS 44 (473)
Q Consensus 6 ~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~ 44 (473)
+||+|+..+.. .+...+.|.+ .||+|..+.+..
T Consensus 3 mkIvf~Gs~~~-----a~~~L~~L~~-~~~~i~~Vvt~~ 35 (312)
T PRK06988 3 PRAVVFAYHNV-----GVRCLQVLLA-RGVDVALVVTHE 35 (312)
T ss_pred cEEEEEeCcHH-----HHHHHHHHHh-CCCCEEEEEcCC
Confidence 49999976543 3456678888 899987777653
No 292
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=42.71 E-value=2.1e+02 Score=24.17 Aligned_cols=28 Identities=21% Similarity=0.332 Sum_probs=24.8
Q ss_pred cCCCccCHHHHHHHHHHHHhCCCcEEEEE
Q 043168 12 PLMAQGHIIPFLALALHLENTNRYTITFV 40 (473)
Q Consensus 12 ~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~ 40 (473)
+.++-|-..=.+.|+..|.+ +|.+|.++
T Consensus 5 t~~~~GKT~va~~L~~~l~~-~g~~V~~~ 32 (166)
T TIGR00347 5 TDTGVGKTVASSALAAKLKK-AGYSVGYY 32 (166)
T ss_pred CCCCccHHHHHHHHHHHHHH-CCCcEEEE
Confidence 45678888999999999999 99999986
No 293
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=42.65 E-value=49 Score=28.17 Aligned_cols=105 Identities=16% Similarity=0.099 Sum_probs=58.6
Q ss_pred EEEEcCCCccCHHH----HHHHHHHHHhCCCcEEEEEcCC---cchhh----hhhcCCCCCCceEEeccCCCCCCCCCCC
Q 043168 8 IVMFPLMAQGHIIP----FLALALHLENTNRYTITFVNTP---SNLKK----LKSSLPQNSSIHLREIPFDGIAHDLPPC 76 (473)
Q Consensus 8 Il~~~~~~~GHv~P----~l~LA~~L~~~rGh~Vt~~~~~---~~~~~----v~~~~~~~~~~~~~~ip~~~~~~~l~~~ 76 (473)
|+++.--..|.++| .+..|++|.+..|.+|+.++-. ...+. +...|. . +.+.+..+ .+..
T Consensus 2 ilv~~e~~~~~l~~~~~e~l~~A~~La~~~g~~v~av~~G~~~~~~~~l~~~l~~~G~--d--~v~~~~~~----~~~~- 72 (164)
T PF01012_consen 2 ILVFAEHRDGRLNPVSLEALEAARRLAEALGGEVTAVVLGPAEEAAEALRKALAKYGA--D--KVYHIDDP----ALAE- 72 (164)
T ss_dssp EEEEE-EETCEE-HHHHHHHHHHHHHHHCTTSEEEEEEEETCCCHHHHHHHHHHSTTE--S--EEEEEE-G----GGTT-
T ss_pred EEEEEECCCCccCHHHHHHHHHHHHHHhhcCCeEEEEEEecchhhHHHHhhhhhhcCC--c--EEEEecCc----cccc-
Confidence 44444444555555 5677889977467787666643 23333 222333 1 23333311 1100
Q ss_pred CCCCCCCCCCCchHHHHHHhhhhHHHHHHHhhhhhccCCCCCeEEEeCCCcc---hHHHHHHHhCCcEEEE
Q 043168 77 TENSDSLPFHLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFA---WSAEIAQEYGIFNALF 144 (473)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~~---~~~~~A~~~giP~v~~ 144 (473)
.........+.+++++. +||+|+...... .+..+|..+|.|++.-
T Consensus 73 ----------------~~~~~~a~~l~~~~~~~-------~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~ 120 (164)
T PF01012_consen 73 ----------------YDPEAYADALAELIKEE-------GPDLVLFGSTSFGRDLAPRLAARLGAPLVTD 120 (164)
T ss_dssp ----------------C-HHHHHHHHHHHHHHH-------T-SEEEEESSHHHHHHHHHHHHHHT-EEEEE
T ss_pred ----------------cCHHHHHHHHHHHHHhc-------CCCEEEEcCcCCCCcHHHHHHHHhCCCccce
Confidence 01224455667778888 999999887555 4567999999999985
No 294
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=42.41 E-value=1.6e+02 Score=28.02 Aligned_cols=41 Identities=10% Similarity=0.135 Sum_probs=34.2
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcch
Q 043168 5 KENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNL 46 (473)
Q Consensus 5 ~~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~ 46 (473)
+..|.+...++.|-..=+..|+..|.. +|+.|.++..+...
T Consensus 34 ~~~i~i~G~~G~GKttl~~~l~~~~~~-~~~~v~~i~~D~~~ 74 (300)
T TIGR00750 34 AHRVGITGTPGAGKSTLLEALGMELRR-RGLKVAVIAVDPSS 74 (300)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEecCCCC
Confidence 445677777899999999999999999 99999988866433
No 295
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=42.38 E-value=1.6e+02 Score=29.91 Aligned_cols=31 Identities=10% Similarity=0.046 Sum_probs=25.7
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcC
Q 043168 6 ENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNT 42 (473)
Q Consensus 6 ~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~ 42 (473)
+|||++..+++.| +|++.|++ .|++|.++..
T Consensus 3 ~kVLvlG~G~re~-----al~~~l~~-~g~~v~~~~~ 33 (435)
T PRK06395 3 MKVMLVGSGGRED-----AIARAIKR-SGAILFSVIG 33 (435)
T ss_pred eEEEEECCcHHHH-----HHHHHHHh-CCCeEEEEEC
Confidence 4999999888888 68999999 8987777754
No 296
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=42.32 E-value=79 Score=25.74 Aligned_cols=37 Identities=19% Similarity=0.360 Sum_probs=27.6
Q ss_pred ceEEEEecCcccCCHHHHHHHHHHHHh--CCCcEEEEEc
Q 043168 263 SVIYVSFGSQNTIAASQMMQLAMALEA--CGKNFIWVVK 299 (473)
Q Consensus 263 ~~V~vs~GS~~~~~~~~~~~~~~al~~--~~~~~i~~~~ 299 (473)
.+++|++||........+..+.+.+++ .+..+-|...
T Consensus 2 aillv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V~~aft 40 (127)
T cd03412 2 AILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEVRWAFT 40 (127)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEEec
Confidence 589999999987555677888888865 4567777654
No 297
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=42.12 E-value=54 Score=27.97 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=24.8
Q ss_pred eEEEEecCcccCCHHHHHHHHHHHHhCCC
Q 043168 264 VIYVSFGSQNTIAASQMMQLAMALEACGK 292 (473)
Q Consensus 264 ~V~vs~GS~~~~~~~~~~~~~~al~~~~~ 292 (473)
.||+++||-.......++..+.+|.+.+.
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~ 31 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALAD 31 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCC
Confidence 69999999987777788999999988764
No 298
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=42.11 E-value=38 Score=31.92 Aligned_cols=28 Identities=18% Similarity=0.405 Sum_probs=22.9
Q ss_pred cceeeeccChhhHHHHHh---cCCCEEeccc
Q 043168 348 ISAFLSHCGWNSVLEALS---HGVPIIGWPL 375 (473)
Q Consensus 348 ~~~~I~HgG~gs~~eal~---~GvP~i~~P~ 375 (473)
++++|.-||-||+.+++. .++|+++++.
T Consensus 58 ~d~vi~iGGDGTlL~a~~~~~~~~pi~gIn~ 88 (277)
T PRK03708 58 VDFIIAIGGDGTILRIEHKTKKDIPILGINM 88 (277)
T ss_pred CCEEEEEeCcHHHHHHHHhcCCCCeEEEEeC
Confidence 558999999999999874 4568888864
No 299
>PRK09620 hypothetical protein; Provisional
Probab=42.03 E-value=30 Score=31.59 Aligned_cols=38 Identities=5% Similarity=-0.021 Sum_probs=28.9
Q ss_pred CceEEEEcCCCccCHHHH------------HHHHHHHHhCCCcEEEEEcCC
Q 043168 5 KENIVMFPLMAQGHIIPF------------LALALHLENTNRYTITFVNTP 43 (473)
Q Consensus 5 ~~~Il~~~~~~~GHv~P~------------l~LA~~L~~~rGh~Vt~~~~~ 43 (473)
-++|++.+.|+.=.+.|. ..||++|.. +||+|+++...
T Consensus 3 gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~-~Ga~V~li~g~ 52 (229)
T PRK09620 3 GKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELIS-KGAHVIYLHGY 52 (229)
T ss_pred CCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHH-CCCeEEEEeCC
Confidence 357888877766554442 489999999 99999999754
No 300
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=41.92 E-value=60 Score=29.57 Aligned_cols=42 Identities=17% Similarity=0.163 Sum_probs=35.7
Q ss_pred eEEEEcC-CCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhh
Q 043168 7 NIVMFPL-MAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKL 49 (473)
Q Consensus 7 ~Il~~~~-~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v 49 (473)
-|.|++. |+.|-..-.+.||.+|.+ +|-.|+++=.+++++..
T Consensus 3 vItf~s~KGGaGKTT~~~~LAs~la~-~G~~V~lIDaDpn~pl~ 45 (231)
T PF07015_consen 3 VITFASSKGGAGKTTAAMALASELAA-RGARVALIDADPNQPLA 45 (231)
T ss_pred eEEEecCCCCCcHHHHHHHHHHHHHH-CCCeEEEEeCCCCCcHH
Confidence 5666654 899999999999999999 99999999987766554
No 301
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=41.54 E-value=34 Score=29.80 Aligned_cols=43 Identities=14% Similarity=0.125 Sum_probs=33.1
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhh
Q 043168 6 ENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKLK 50 (473)
Q Consensus 6 ~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~ 50 (473)
+||++...|+.| ..-...+.+.|++ +|++|.++.++...+.+.
T Consensus 1 k~I~lgvtGs~~-a~~~~~ll~~L~~-~g~~V~vi~T~~A~~fi~ 43 (177)
T TIGR02113 1 KKILLAVTGSIA-AYKAADLTSQLTK-LGYDVTVLMTQAATQFIT 43 (177)
T ss_pred CEEEEEEcCHHH-HHHHHHHHHHHHH-CCCEEEEEEChHHHhhcc
Confidence 367666666554 4566799999999 999999999887776665
No 302
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=41.45 E-value=2.7e+02 Score=26.40 Aligned_cols=102 Identities=10% Similarity=0.126 Sum_probs=55.6
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhC-CCcEEEEEcCCc--chhhhhhcCCCCCCceEEeccCCCCCCCCCCCCCCC
Q 043168 4 RKENIVMFPLMAQGHIIPFLALALHLENT-NRYTITFVNTPS--NLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENS 80 (473)
Q Consensus 4 ~~~~Il~~~~~~~GHv~P~l~LA~~L~~~-rGh~Vt~~~~~~--~~~~v~~~~~~~~~~~~~~ip~~~~~~~l~~~~~~~ 80 (473)
+++||+++..+..+.+. +|.++.... -+++|..+.+.. .....+. .++.+..++.. . .
T Consensus 88 ~~~ri~vl~Sg~gsnl~---al~~~~~~~~~~~~i~~visn~~~~~~lA~~-----~gIp~~~~~~~----~--~----- 148 (286)
T PRK06027 88 ERKRVVILVSKEDHCLG---DLLWRWRSGELPVEIAAVISNHDDLRSLVER-----FGIPFHHVPVT----K--E----- 148 (286)
T ss_pred cCcEEEEEEcCCCCCHH---HHHHHHHcCCCCcEEEEEEEcChhHHHHHHH-----hCCCEEEeccC----c--c-----
Confidence 57799999988855544 334444331 367876665432 3333333 45566554411 0 0
Q ss_pred CCCCCCCchHHHHHHhhhhHHHHHHHhhhhhccCCCCCeEEEeCCCcc-hHHHHHHHhCCcEEEE
Q 043168 81 DSLPFHLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFA-WSAEIAQEYGIFNALF 144 (473)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~~-~~~~~A~~~giP~v~~ 144 (473)
........+.++++++ +||+||.-.+.. ....+-..+.-.++-+
T Consensus 149 -------------~~~~~~~~~~~~l~~~-------~~Dlivlagy~~il~~~~l~~~~~~iiNi 193 (286)
T PRK06027 149 -------------TKAEAEARLLELIDEY-------QPDLVVLARYMQILSPDFVARFPGRIINI 193 (286)
T ss_pred -------------ccchhHHHHHHHHHHh-------CCCEEEEecchhhcCHHHHhhccCCceec
Confidence 0012233456778888 999998776543 3444455554455554
No 303
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=41.45 E-value=26 Score=31.94 Aligned_cols=36 Identities=17% Similarity=0.064 Sum_probs=26.6
Q ss_pred eEEEEcCCCccCHHHH------------HHHHHHHHhCCCcEEEEEcCC
Q 043168 7 NIVMFPLMAQGHIIPF------------LALALHLENTNRYTITFVNTP 43 (473)
Q Consensus 7 ~Il~~~~~~~GHv~P~------------l~LA~~L~~~rGh~Vt~~~~~ 43 (473)
||++.+.|+.=.+.|. .+||++|.+ +||+|+++...
T Consensus 2 ~vliT~G~T~e~iD~VR~itN~SSG~iG~aLA~~L~~-~G~~V~li~r~ 49 (229)
T PRK06732 2 KILITSGGTTEPIDSVRGITNHSTGQLGKIIAETFLA-AGHEVTLVTTK 49 (229)
T ss_pred EEEEcCCCcccccCCceeecCccchHHHHHHHHHHHh-CCCEEEEEECc
Confidence 6666666666555442 488999999 99999998743
No 304
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=41.12 E-value=2.4e+02 Score=24.46 Aligned_cols=35 Identities=11% Similarity=0.167 Sum_probs=30.4
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEc
Q 043168 6 ENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVN 41 (473)
Q Consensus 6 ~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~ 41 (473)
--|.+++..+.|-.+-.+.+|-+... +|++|.++-
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~-~g~~v~ivQ 40 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALG-HGKKVGVIQ 40 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHH-CCCeEEEEE
Confidence 36788888999999999999999999 999997663
No 305
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=40.86 E-value=49 Score=33.83 Aligned_cols=52 Identities=15% Similarity=0.249 Sum_probs=38.7
Q ss_pred cceeeeccChhhHHHHHhc----CCCEEecccccchhhhHHHHHHHHc-ceEEEecccCCccCHHHHHHHHHHHHcCC
Q 043168 348 ISAFLSHCGWNSVLEALSH----GVPIIGWPLAAEQFYNSKLLEEVIG-VCVEVARGMNCEVSKENLSAKFELVMNET 420 (473)
Q Consensus 348 ~~~~I~HgG~gs~~eal~~----GvP~i~~P~~~DQ~~~a~~v~~~lG-~G~~l~~~~~~~~~~~~l~~ai~~~l~~~ 420 (473)
++++|+=||=||++.|... ++|++.+- . | +|... .++.+++.++|.++++++
T Consensus 263 ~DlVIsiGGDGTlL~Aar~~~~~~iPILGIN--------------~-G~LGFLt------~i~~~e~~~~Le~il~G~ 319 (508)
T PLN02935 263 VDLVITLGGDGTVLWAASMFKGPVPPVVPFS--------------M-GSLGFMT------PFHSEQYRDCLDAILKGP 319 (508)
T ss_pred CCEEEEECCcHHHHHHHHHhccCCCcEEEEe--------------C-CCcceec------ccCHHHHHHHHHHHHcCC
Confidence 5699999999999999763 57888772 1 2 44322 357888889999888765
No 306
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=40.72 E-value=1e+02 Score=28.49 Aligned_cols=47 Identities=13% Similarity=0.077 Sum_probs=38.2
Q ss_pred CCceEEEEcC-CCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhh
Q 043168 4 RKENIVMFPL-MAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (473)
Q Consensus 4 ~~~~Il~~~~-~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~~ 51 (473)
...|..|+.. |+-|...-.-.||-.|.. -+|.|.++++++.+.....
T Consensus 17 ~slKwifVGGKGGVGKTTcs~sLAvqla~-~r~~vLiISTDPAHNlSDA 64 (323)
T KOG2825|consen 17 TSLKWIFVGGKGGVGKTTCSCSLAVQLAK-VRESVLIISTDPAHNLSDA 64 (323)
T ss_pred ceeeEEEEcCcCCcCccchhhHHHHHHhc-cCCceEEeecCcccchHHH
Confidence 3457777765 799999999999999999 9999999998886654443
No 307
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=40.71 E-value=26 Score=35.67 Aligned_cols=38 Identities=16% Similarity=0.237 Sum_probs=33.0
Q ss_pred ceEEEEcCCCccCHHHH------------HHHHHHHHhCCCcEEEEEcCCc
Q 043168 6 ENIVMFPLMAQGHIIPF------------LALALHLENTNRYTITFVNTPS 44 (473)
Q Consensus 6 ~~Il~~~~~~~GHv~P~------------l~LA~~L~~~rGh~Vt~~~~~~ 44 (473)
+||++...|++=.+.|. .+||+++.. +|++||+++.+.
T Consensus 257 kkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~-~GA~VtlI~Gp~ 306 (475)
T PRK13982 257 RRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAA-AGAEVTLISGPV 306 (475)
T ss_pred CEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHH-CCCcEEEEeCCc
Confidence 48999999998888875 489999999 999999999764
No 308
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=40.54 E-value=1.1e+02 Score=30.68 Aligned_cols=33 Identities=15% Similarity=0.126 Sum_probs=25.9
Q ss_pred eEEEEc-CCCccCHHHHHHHHHHHHhCCCcEEEEE
Q 043168 7 NIVMFP-LMAQGHIIPFLALALHLENTNRYTITFV 40 (473)
Q Consensus 7 ~Il~~~-~~~~GHv~P~l~LA~~L~~~rGh~Vt~~ 40 (473)
+|++.. ..+.|-.+-.+.|.++|++ ||++|.=+
T Consensus 2 ~vvIAg~~SG~GKTTvT~glm~aL~~-rg~~Vqpf 35 (451)
T COG1797 2 AVVIAGTSSGSGKTTVTLGLMRALRR-RGLKVQPF 35 (451)
T ss_pred ceEEecCCCCCcHHHHHHHHHHHHHh-cCCccccc
Confidence 344433 4588999999999999999 99998643
No 309
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=40.46 E-value=44 Score=31.37 Aligned_cols=51 Identities=14% Similarity=0.206 Sum_probs=35.3
Q ss_pred cceeeeccChhhHHHHHh----cCCCEEecccccchhhhHHHHHHHHcceEEEecccCCccCHHHHHHHHHHHHc
Q 043168 348 ISAFLSHCGWNSVLEALS----HGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAKFELVMN 418 (473)
Q Consensus 348 ~~~~I~HgG~gs~~eal~----~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ai~~~l~ 418 (473)
++++|+=||=||++.++. .++|++.+-.. .+|.-. ..+++++.+++.+++.
T Consensus 43 ~d~vi~iGGDGT~L~aa~~~~~~~~PilgIn~G--------------~lGFL~------~~~~~~~~~~l~~~~~ 97 (272)
T PRK02231 43 AQLAIVIGGDGNMLGRARVLAKYDIPLIGINRG--------------NLGFLT------DIDPKNAYEQLEACLE 97 (272)
T ss_pred CCEEEEECCcHHHHHHHHHhccCCCcEEEEeCC--------------CCcccc------cCCHHHHHHHHHHHHh
Confidence 458999999999998755 37898887321 133222 2466777777777776
No 310
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=40.01 E-value=2.4e+02 Score=24.12 Aligned_cols=28 Identities=11% Similarity=0.165 Sum_probs=20.8
Q ss_pred cceeeeccCh------hhHHHHHhcCCCEEeccc
Q 043168 348 ISAFLSHCGW------NSVLEALSHGVPIIGWPL 375 (473)
Q Consensus 348 ~~~~I~HgG~------gs~~eal~~GvP~i~~P~ 375 (473)
..++++|.|- +++.+|...++|+|++.-
T Consensus 65 ~~v~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~g 98 (172)
T PF02776_consen 65 PGVVIVTSGPGATNALTGLANAYADRIPVLVITG 98 (172)
T ss_dssp EEEEEEETTHHHHTTHHHHHHHHHTT-EEEEEEE
T ss_pred ceEEEeecccchHHHHHHHhhcccceeeEEEEec
Confidence 4467888774 467789999999999764
No 311
>PRK05858 hypothetical protein; Provisional
Probab=39.98 E-value=2e+02 Score=30.01 Aligned_cols=26 Identities=12% Similarity=0.088 Sum_probs=20.9
Q ss_pred ceeeeccChh------hHHHHHhcCCCEEecc
Q 043168 349 SAFLSHCGWN------SVLEALSHGVPIIGWP 374 (473)
Q Consensus 349 ~~~I~HgG~g------s~~eal~~GvP~i~~P 374 (473)
.++++|.|-| .+++|...++|+|++.
T Consensus 69 gv~~~t~GpG~~n~~~~i~~A~~~~~Pvl~i~ 100 (542)
T PRK05858 69 GVAVLTAGPGVTNGMSAMAAAQFNQSPLVVLG 100 (542)
T ss_pred eEEEEcCCchHHHHHHHHHHHHhcCCCEEEEe
Confidence 4577787744 7889999999999975
No 312
>PRK08266 hypothetical protein; Provisional
Probab=39.97 E-value=2e+02 Score=30.06 Aligned_cols=27 Identities=15% Similarity=0.119 Sum_probs=21.9
Q ss_pred cceeeeccChh------hHHHHHhcCCCEEecc
Q 043168 348 ISAFLSHCGWN------SVLEALSHGVPIIGWP 374 (473)
Q Consensus 348 ~~~~I~HgG~g------s~~eal~~GvP~i~~P 374 (473)
..++++|.|-| .+.+|...++|+|++-
T Consensus 69 ~~v~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~ 101 (542)
T PRK08266 69 PGVCSVVPGPGVLNAGAALLTAYGCNSPVLCLT 101 (542)
T ss_pred CeEEEECCCCcHHHHHHHHHHHHhhCCCEEEEe
Confidence 44678888855 7889999999999874
No 313
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=39.81 E-value=43 Score=35.28 Aligned_cols=53 Identities=28% Similarity=0.333 Sum_probs=38.1
Q ss_pred cceeeeccChhhHHHHHh----cCCCEEecccccchhhhHHHHHHHHcceEEEecccCCccCHHHHHHHHHHHHcCC
Q 043168 348 ISAFLSHCGWNSVLEALS----HGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAKFELVMNET 420 (473)
Q Consensus 348 ~~~~I~HgG~gs~~eal~----~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ai~~~l~~~ 420 (473)
++++|+-||=||++.+.. .++|++.+-.. .+|.. -..+.+++.+++.++++++
T Consensus 349 ~dlvi~lGGDGT~L~aa~~~~~~~~PilGin~G--------------~lGFL------~~~~~~~~~~~l~~~~~g~ 405 (569)
T PRK14076 349 ISHIISIGGDGTVLRASKLVNGEEIPIICINMG--------------TVGFL------TEFSKEEIFKAIDSIISGE 405 (569)
T ss_pred CCEEEEECCcHHHHHHHHHhcCCCCCEEEEcCC--------------CCCcC------cccCHHHHHHHHHHHHcCC
Confidence 568999999999999876 47899888321 12221 2356788888888888765
No 314
>PRK02399 hypothetical protein; Provisional
Probab=39.36 E-value=2.8e+02 Score=27.72 Aligned_cols=95 Identities=18% Similarity=0.123 Sum_probs=55.9
Q ss_pred CCceEEEEe-cCcccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCccchhcccCCchhHHHhhccCCCCeEEecccCh
Q 043168 261 CNSVIYVSF-GSQNTIAASQMMQLAMALEACGKNFIWVVKPPLGFDLNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQ 339 (473)
Q Consensus 261 ~~~~V~vs~-GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 339 (473)
+||.|-+|+ |.. ..-+..+.+.|++.++.+++....+. .-.-.|++.+...---+.+.-.+
T Consensus 185 ~kp~Ig~TmfGvT----tp~v~~~~~~Le~~GyEvlVFHATG~--------------GGraME~Li~~G~~~gVlDlTtt 246 (406)
T PRK02399 185 DKPLIGLTMFGVT----TPCVQAAREELEARGYEVLVFHATGT--------------GGRAMEKLIDSGLIAGVLDLTTT 246 (406)
T ss_pred CCceEEEecCCCc----HHHHHHHHHHHHhCCCeEEEEcCCCC--------------chHHHHHHHHcCCceEEEEcchH
Confidence 577877754 444 35677888889999999988866552 11112222210111112233333
Q ss_pred HHhhcccccceeeeccChhhHHHHHhcCCCEEecccc
Q 043168 340 VEILSHKSISAFLSHCGWNSVLEALSHGVPIIGWPLA 376 (473)
Q Consensus 340 ~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~i~~P~~ 376 (473)
. +-.+ +-.-|..+|-.=+-.|...|+|+|+.|-.
T Consensus 247 E-v~d~--l~GGv~sagp~Rl~Aa~~~gIP~Vvs~Ga 280 (406)
T PRK02399 247 E-VCDE--LFGGVLAAGPDRLEAAARTGIPQVVSPGA 280 (406)
T ss_pred H-HHHH--HhCcCccCCccHHHHHHHcCCCEEecCCc
Confidence 2 2222 22346678888899999999999987753
No 315
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.34 E-value=47 Score=32.67 Aligned_cols=43 Identities=16% Similarity=0.200 Sum_probs=37.0
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhh
Q 043168 6 ENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKL 49 (473)
Q Consensus 6 ~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v 49 (473)
.-|+|+..-+.|-..-+-.+|..++. +|+.+-++|.+.|+.-.
T Consensus 102 sVimfVGLqG~GKTTtc~KlA~y~kk-kG~K~~LvcaDTFRagA 144 (483)
T KOG0780|consen 102 SVIMFVGLQGSGKTTTCTKLAYYYKK-KGYKVALVCADTFRAGA 144 (483)
T ss_pred cEEEEEeccCCCcceeHHHHHHHHHh-cCCceeEEeecccccch
Confidence 34677777899999999999999999 99999999988766544
No 316
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=38.93 E-value=45 Score=33.34 Aligned_cols=46 Identities=17% Similarity=0.047 Sum_probs=37.2
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhh
Q 043168 4 RKENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (473)
Q Consensus 4 ~~~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~~ 51 (473)
.++||++...|+. ...-...+.+.|++ .|++|.++.++.....+..
T Consensus 5 ~~k~IllgvTGsi-aa~k~~~lv~~L~~-~g~~V~vv~T~~A~~fi~~ 50 (399)
T PRK05579 5 AGKRIVLGVSGGI-AAYKALELVRRLRK-AGADVRVVMTEAAKKFVTP 50 (399)
T ss_pred CCCeEEEEEeCHH-HHHHHHHHHHHHHh-CCCEEEEEECHhHHHHHhH
Confidence 4568888777766 45578899999999 9999999999887777764
No 317
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=38.85 E-value=37 Score=32.18 Aligned_cols=37 Identities=11% Similarity=0.076 Sum_probs=30.8
Q ss_pred CCCCCceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCC
Q 043168 1 MAQRKENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTP 43 (473)
Q Consensus 1 m~~~~~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~ 43 (473)
|++...||.++..+..|. .+|..|.. .||+|+++...
T Consensus 1 ~~~~~~~V~ViGaG~mG~-----~iA~~~a~-~G~~V~l~d~~ 37 (286)
T PRK07819 1 MSDAIQRVGVVGAGQMGA-----GIAEVCAR-AGVDVLVFETT 37 (286)
T ss_pred CCCCccEEEEEcccHHHH-----HHHHHHHh-CCCEEEEEECC
Confidence 666667999999888886 78888999 99999999744
No 318
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=38.79 E-value=68 Score=25.51 Aligned_cols=41 Identities=12% Similarity=0.118 Sum_probs=33.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhh
Q 043168 8 IVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKL 49 (473)
Q Consensus 8 Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v 49 (473)
++..+.++..|.....-++..|++ .|++|.+.......+.+
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~-~G~~v~~l~~~~~~~~~ 42 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRD-NGFEVIDLGVDVPPEEI 42 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHH-CCCEEEEcCCCCCHHHH
Confidence 577788899999999999999999 99999999765443333
No 319
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=38.45 E-value=66 Score=27.57 Aligned_cols=42 Identities=19% Similarity=0.161 Sum_probs=32.5
Q ss_pred hhhHHHHHHHhhhhhccCCCCCeEEEeCCCcc---hHHHHHHHhCCcEEEEc
Q 043168 97 SFKPHFRKLINGLIDEQNGHKPVCIIADMFFA---WSAEIAQEYGIFNALFV 145 (473)
Q Consensus 97 ~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~~---~~~~~A~~~giP~v~~~ 145 (473)
...+.+.+++++. +||+|++..... .+..+|.++|.|++.-.
T Consensus 70 ~~a~al~~~i~~~-------~p~~Vl~~~t~~g~~la~rlAa~L~~~~vtdv 114 (168)
T cd01715 70 PYAPALVALAKKE-------KPSHILAGATSFGKDLAPRVAAKLDVGLISDV 114 (168)
T ss_pred HHHHHHHHHHHhc-------CCCEEEECCCccccchHHHHHHHhCCCceeeE
Confidence 4445566777777 899999887654 56789999999998863
No 320
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=38.40 E-value=2.8e+02 Score=24.39 Aligned_cols=57 Identities=18% Similarity=0.187 Sum_probs=37.1
Q ss_pred ceEEEEc---CC-CccCHHHHH-HHHHHHHhCCCcEEEEEcCCcchhhhhhcCCCCCCceEEeccC
Q 043168 6 ENIVMFP---LM-AQGHIIPFL-ALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPF 66 (473)
Q Consensus 6 ~~Il~~~---~~-~~GHv~P~l-~LA~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~ip~ 66 (473)
+||.++. .| -+|=+--++ .|+..|++ +||+|++.|.....+.-... . .|++...+|.
T Consensus 2 kkIaIiGtrGIPa~YGGfET~ve~L~~~l~~-~g~~v~Vyc~~~~~~~~~~~-y--~gv~l~~i~~ 63 (185)
T PF09314_consen 2 KKIAIIGTRGIPARYGGFETFVEELAPRLVS-KGIDVTVYCRSDYYPYKEFE-Y--NGVRLVYIPA 63 (185)
T ss_pred ceEEEEeCCCCCcccCcHHHHHHHHHHHHhc-CCceEEEEEccCCCCCCCcc-c--CCeEEEEeCC
Confidence 4887776 34 477766654 67889999 99999999976544322111 1 4567776663
No 321
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=38.33 E-value=3.6e+02 Score=28.50 Aligned_cols=61 Identities=16% Similarity=0.092 Sum_probs=35.5
Q ss_pred eeeeccChhhHHH--HHhcCCCEEecccccchhhhHHHHHHHHcceEEEecccCCccCHHHHHHHHHHHHc
Q 043168 350 AFLSHCGWNSVLE--ALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAKFELVMN 418 (473)
Q Consensus 350 ~~I~HgG~gs~~e--al~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ai~~~l~ 418 (473)
.+++++|+|.+.. -+.++-+....-+ ...++.++..+ .+|+- -. .--+.++|.+++++.+.
T Consensus 469 vV~NN~~~g~~~~~~~~~~~~~~~~~~~-~~~~d~~~la~-a~G~~--~~----~v~~~~el~~al~~a~~ 531 (586)
T PRK06276 469 CIFDNRTLGMVYQWQNLYYGKRQSEVHL-GETPDFVKLAE-SYGVK--AD----RVEKPDEIKEALKEAIK 531 (586)
T ss_pred EEEeCCchHHHHHHHHHHhCCCcccccC-CCCCCHHHHHH-HCCCe--EE----EECCHHHHHHHHHHHHh
Confidence 6899999997653 3344544322211 02355666555 33542 22 13478999999998874
No 322
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=38.32 E-value=88 Score=31.34 Aligned_cols=45 Identities=18% Similarity=0.111 Sum_probs=38.2
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhh
Q 043168 5 KENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKLK 50 (473)
Q Consensus 5 ~~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~ 50 (473)
|..|+++..=+.|-.+-+-.||.-|+. +|+.|.+++.+.+++-.-
T Consensus 100 P~vImmvGLQGsGKTTt~~KLA~~lkk-~~~kvllVaaD~~RpAA~ 144 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAGKLAKYLKK-KGKKVLLVAADTYRPAAI 144 (451)
T ss_pred CeEEEEEeccCCChHhHHHHHHHHHHH-cCCceEEEecccCChHHH
Confidence 345777777899999999999999999 999999999887666443
No 323
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=38.20 E-value=2e+02 Score=26.66 Aligned_cols=103 Identities=17% Similarity=0.063 Sum_probs=58.0
Q ss_pred HHHHHHHHHhCCC-cEEEEEcCCcchhhhhhcCCCCCCceEEeccCCCCCCCCCCCCCCCCCCCCCCchHHHHHHhhhhH
Q 043168 22 FLALALHLENTNR-YTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLPFHLFPNFFESTLSFKP 100 (473)
Q Consensus 22 ~l~LA~~L~~~rG-h~Vt~~~~~~~~~~v~~~~~~~~~~~~~~ip~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (473)
+-..++.|.+ .+ .+|.+.++....+.+.........+-++-+|.+....+++....-.... ....+
T Consensus 118 ~~eA~~~l~~-~~~~~iflttGsk~L~~f~~~~~~~~r~~~RvLp~~~~~~g~~~~~iia~~G------------Pfs~e 184 (249)
T PF02571_consen 118 YEEAAELLKE-LGGGRIFLTTGSKNLPPFVPAPLPGERLFARVLPTPESALGFPPKNIIAMQG------------PFSKE 184 (249)
T ss_pred HHHHHHHHhh-cCCCCEEEeCchhhHHHHhhcccCCCEEEEEECCCccccCCCChhhEEEEeC------------CCCHH
Confidence 4566777777 66 7777777776666664411111455566666543222222211101111 11222
Q ss_pred HHHHHHhhhhhccCCCCCeEEEeCCCcc----hHHHHHHHhCCcEEEE
Q 043168 101 HFRKLINGLIDEQNGHKPVCIIADMFFA----WSAEIAQEYGIFNALF 144 (473)
Q Consensus 101 ~l~~~l~~~~~~~~~~~pDlVI~D~~~~----~~~~~A~~~giP~v~~ 144 (473)
.=..+++.+ +.|+||+=..-- .=..+|+.+|||+|.+
T Consensus 185 ~n~al~~~~-------~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI 225 (249)
T PF02571_consen 185 LNRALFRQY-------GIDVLVTKESGGSGFDEKIEAARELGIPVIVI 225 (249)
T ss_pred HHHHHHHHc-------CCCEEEEcCCCchhhHHHHHHHHHcCCeEEEE
Confidence 346778888 999999543221 2246999999999998
No 324
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=38.14 E-value=1.7e+02 Score=30.88 Aligned_cols=27 Identities=19% Similarity=0.346 Sum_probs=22.2
Q ss_pred cceeeeccChh------hHHHHHhcCCCEEecc
Q 043168 348 ISAFLSHCGWN------SVLEALSHGVPIIGWP 374 (473)
Q Consensus 348 ~~~~I~HgG~g------s~~eal~~GvP~i~~P 374 (473)
.+++++|.|-| .+.+|.+.++|+|++.
T Consensus 68 ~gv~~~t~GpG~~N~l~~i~~A~~~~~Pvlvi~ 100 (574)
T PRK06882 68 VGCVLVTSGPGATNAITGIATAYTDSVPLVILS 100 (574)
T ss_pred CeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 55788888855 6789999999999984
No 325
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=38.05 E-value=41 Score=29.39 Aligned_cols=42 Identities=21% Similarity=0.115 Sum_probs=32.3
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhh
Q 043168 7 NIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKLK 50 (473)
Q Consensus 7 ~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~ 50 (473)
||++...|+.|-+ -...|.+.|++ +|++|.++.++.....+.
T Consensus 1 ~illgvtGsiaa~-ka~~lir~L~~-~g~~V~vv~T~~A~~fv~ 42 (181)
T TIGR00421 1 RIVVAMTGASGVI-YGIRLLEVLKE-AGVEVHLVISDWAKETIK 42 (181)
T ss_pred CEEEEEECHHHHH-HHHHHHHHHHH-CCCEEEEEECccHHHHHH
Confidence 4555555665554 45889999999 999999999998887765
No 326
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=37.67 E-value=88 Score=25.71 Aligned_cols=39 Identities=13% Similarity=0.109 Sum_probs=35.0
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCC
Q 043168 4 RKENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTP 43 (473)
Q Consensus 4 ~~~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~ 43 (473)
++.||++...+.-+|-..---++..|.. .|++|+.....
T Consensus 1 ~~~~v~~a~~g~D~Hd~g~~iv~~~l~~-~GfeVi~lg~~ 39 (132)
T TIGR00640 1 RRPRILVAKMGQDGHDRGAKVIATAYAD-LGFDVDVGPLF 39 (132)
T ss_pred CCCEEEEEeeCCCccHHHHHHHHHHHHh-CCcEEEECCCC
Confidence 4679999999999999999889999999 99999988853
No 327
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=37.53 E-value=56 Score=30.49 Aligned_cols=39 Identities=15% Similarity=0.209 Sum_probs=25.7
Q ss_pred ceEEEEecCcccCCHH-HHHHHHHHHHh--CCCcEEEEEcCC
Q 043168 263 SVIYVSFGSQNTIAAS-QMMQLAMALEA--CGKNFIWVVKPP 301 (473)
Q Consensus 263 ~~V~vs~GS~~~~~~~-~~~~~~~al~~--~~~~~i~~~~~~ 301 (473)
.+++|||||....... -+..+.+.++. +++.+-|+..+.
T Consensus 2 AIllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfTS~ 43 (262)
T PF06180_consen 2 AILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFTSR 43 (262)
T ss_dssp EEEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES-H
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEchHH
Confidence 4899999999865444 77777777777 688999987754
No 328
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=37.26 E-value=2.4e+02 Score=29.80 Aligned_cols=27 Identities=15% Similarity=0.173 Sum_probs=22.0
Q ss_pred cceeeeccChh------hHHHHHhcCCCEEecc
Q 043168 348 ISAFLSHCGWN------SVLEALSHGVPIIGWP 374 (473)
Q Consensus 348 ~~~~I~HgG~g------s~~eal~~GvP~i~~P 374 (473)
..++++|.|-| .+.+|...++|+|++.
T Consensus 69 ~gv~~~t~GPG~~n~~~gi~~A~~~~~Pvl~I~ 101 (588)
T PRK07525 69 MGMVIGQNGPGITNFVTAVATAYWAHTPVVLVT 101 (588)
T ss_pred CEEEEEcCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 45688888854 6778999999999985
No 329
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=37.22 E-value=1.5e+02 Score=28.91 Aligned_cols=32 Identities=19% Similarity=0.270 Sum_probs=25.4
Q ss_pred hhcccccceeeeccChhh---HHHHHhcCCCEEec
Q 043168 342 ILSHKSISAFLSHCGWNS---VLEALSHGVPIIGW 373 (473)
Q Consensus 342 lL~~~~~~~~I~HgG~gs---~~eal~~GvP~i~~ 373 (473)
++.+-+-+++|++||.=| +..|...|+|.++.
T Consensus 86 i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~ 120 (352)
T PRK12446 86 RIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLH 120 (352)
T ss_pred HHHhcCCCEEEecCchhhHHHHHHHHHcCCCEEEE
Confidence 344434458999999987 89999999999875
No 330
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=37.19 E-value=2.5e+02 Score=27.36 Aligned_cols=62 Identities=18% Similarity=0.184 Sum_probs=40.1
Q ss_pred cccChHHhhcccccceeee------ccChhhHHHHHhcCCCEEe-cccccchhhhHHHHHHHHcceEEE
Q 043168 335 KWAPQVEILSHKSISAFLS------HCGWNSVLEALSHGVPIIG-WPLAAEQFYNSKLLEEVIGVCVEV 396 (473)
Q Consensus 335 ~~~p~~~lL~~~~~~~~I~------HgG~gs~~eal~~GvP~i~-~P~~~DQ~~~a~~v~~~lG~G~~l 396 (473)
.|-...+++...+++++.+ +-+.--+.+||.+|+.+++ -|+..++-.-...+++.-|+=+.+
T Consensus 52 ~y~~~eell~d~Di~~V~ipt~~P~~~H~e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~v 120 (343)
T TIGR01761 52 LYCEVEELPDDIDIACVVVRSAIVGGQGSALARALLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYLV 120 (343)
T ss_pred ccCCHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 4567788887777767764 2445677889999999988 787755444444444332443333
No 331
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=36.80 E-value=3.5e+02 Score=28.26 Aligned_cols=61 Identities=13% Similarity=0.081 Sum_probs=35.2
Q ss_pred eeeeccChhhHHHH--HhcCCCEEeccccc-chhhhHHHHHHHHcceEEEecccCCccCHHHHHHHHHHHHcC
Q 043168 350 AFLSHCGWNSVLEA--LSHGVPIIGWPLAA-EQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAKFELVMNE 419 (473)
Q Consensus 350 ~~I~HgG~gs~~ea--l~~GvP~i~~P~~~-DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ai~~~l~~ 419 (473)
.+++++|+|.+... ..++.+... ... +.++.++..+ .+|+--.. --+.++|.+++++.+..
T Consensus 451 vV~NN~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~la~-a~G~~~~~------v~~~~el~~al~~a~~~ 514 (548)
T PRK08978 451 VLLDNQRLGMVRQWQQLFFDERYSE--TDLSDNPDFVMLAS-AFGIPGQT------ITRKDQVEAALDTLLNS 514 (548)
T ss_pred EEEeCCccHHHHHHHHHHhCCccee--cCCCCCCCHHHHHH-HCCCeEEE------ECCHHHHHHHHHHHHhC
Confidence 68999999976432 223322211 112 3466776666 33543221 23789999999988753
No 332
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.71 E-value=1.8e+02 Score=24.85 Aligned_cols=74 Identities=22% Similarity=0.262 Sum_probs=52.7
Q ss_pred hhHHHHHhcCCCEEecccc--cchhhhHHHHHHHHcceEEEecccCCccCHHHHHHHHHHHHcCChhhHHHHHHHHHHHH
Q 043168 358 NSVLEALSHGVPIIGWPLA--AEQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAKFELVMNETEKGMDLRKKASEVEM 435 (473)
Q Consensus 358 gs~~eal~~GvP~i~~P~~--~DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~~~~ 435 (473)
-|+.|--.+|.=.+. |.- -=+..|+++.++- |.=..+.. +..+.++|.++..+-|.|. +-++++..+.++..
T Consensus 88 ~S~~EQasAGLd~Ls-~~E~a~f~~LN~aY~~rF-gfPfI~aV---kg~~k~~Il~a~~~Rl~n~-~e~E~~tAl~eI~r 161 (176)
T COG3195 88 ESTSEQASAGLDRLS-PEEFARFTELNAAYVERF-GFPFIIAV---KGNTKDTILAAFERRLDND-REQEFATALAEIER 161 (176)
T ss_pred hhHHHHHhcCcccCC-HHHHHHHHHHHHHHHHhc-CCceEEee---cCCCHHHHHHHHHHHhccc-HHHHHHHHHHHHHH
Confidence 466676666654432 111 1267899999976 98877777 6788999999999999988 44567777777766
Q ss_pred HH
Q 043168 436 II 437 (473)
Q Consensus 436 ~~ 437 (473)
..
T Consensus 162 IA 163 (176)
T COG3195 162 IA 163 (176)
T ss_pred HH
Confidence 54
No 333
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=36.68 E-value=1.7e+02 Score=30.74 Aligned_cols=118 Identities=12% Similarity=0.050 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCcEEEEEcCCCCCCCccchhcccCCchhHHHhhccCCCCeEEecccChHHhhccc---------cccee
Q 043168 281 MQLAMALEACGKNFIWVVKPPLGFDLNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVEILSHK---------SISAF 351 (473)
Q Consensus 281 ~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~lL~~~---------~~~~~ 351 (473)
+.+++.|.+.|++.++.+.+.. ...-+.+-.. ..++.+ =-..+...-.++ .++++
T Consensus 7 ~~l~~~L~~~Gv~~vFgipG~~-------------~~~l~~~l~~--~~~i~~-v~~rhE~~A~~~Adgyar~tg~~gv~ 70 (563)
T PRK08527 7 QMVCEALKEEGVKVVFGYPGGA-------------ILNIYDEIYK--QNYFKH-ILTRHEQAAVHAADGYARASGKVGVA 70 (563)
T ss_pred HHHHHHHHHcCCCEEEECCCcc-------------hHHHHHHHhc--cCCCeE-EEeccHHHHHHHHHHHHhhhCCCEEE
Q ss_pred eeccC------hhhHHHHHhcCCCEEec-------------ccccchhhhHHHHHHHHcceEEEecccCCccCHHHHHHH
Q 043168 352 LSHCG------WNSVLEALSHGVPIIGW-------------PLAAEQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAK 412 (473)
Q Consensus 352 I~HgG------~gs~~eal~~GvP~i~~-------------P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~a 412 (473)
++|.| .+.+++|...++|+|++ -+..||....+-+. .....+.. .+--.+.|.+|
T Consensus 71 ~~t~GpG~~n~~~gla~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~~t---k~s~~v~~---~~~i~~~l~~A 144 (563)
T PRK08527 71 IVTSGPGFTNAVTGLATAYMDSIPLVLISGQVPNSLIGTDAFQEIDAVGISRPCV---KHNYLVKS---IEELPRILKEA 144 (563)
T ss_pred EECCCCcHHHHHHHHHHHhhcCCCEEEEecCCCccccCCCCCcccchhhhhhccc---ceEEEcCC---HHHHHHHHHHH
Q ss_pred HHHHHcCC
Q 043168 413 FELVMNET 420 (473)
Q Consensus 413 i~~~l~~~ 420 (473)
++..++.+
T Consensus 145 ~~~a~s~~ 152 (563)
T PRK08527 145 FYIARSGR 152 (563)
T ss_pred HHHHhcCC
No 334
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=36.55 E-value=52 Score=30.14 Aligned_cols=43 Identities=7% Similarity=-0.014 Sum_probs=32.4
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCC--CcEEEEEcCCcchhhhhh
Q 043168 8 IVMFPLMAQGHIIPFLALALHLENTN--RYTITFVNTPSNLKKLKS 51 (473)
Q Consensus 8 Il~~~~~~~GHv~P~l~LA~~L~~~r--Gh~Vt~~~~~~~~~~v~~ 51 (473)
|++.-.|+.+=+.-.+.|.+.|++ . ||+|.++.++.....+..
T Consensus 2 i~~~itGs~~~~~~~~~l~~~L~~-~~~g~~V~vv~T~~a~~~i~~ 46 (234)
T TIGR02700 2 IGWGITGAGHLLVESFQVMKELKR-EIEELRVSTFVSRAGEEVVRM 46 (234)
T ss_pred eEEEEeCccHhHHHHHHHHHHHHh-hcCCCeEEEEEChhHHhHHhh
Confidence 444443444444689999999999 8 999999998887777765
No 335
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=36.46 E-value=2.5e+02 Score=23.39 Aligned_cols=35 Identities=14% Similarity=0.071 Sum_probs=31.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCC
Q 043168 8 IVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTP 43 (473)
Q Consensus 8 Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~ 43 (473)
|.+...++.|-.+.+..++..|.. +|++|.++..+
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~-~g~~v~ii~~D 36 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRA-RGKRVAVLAID 36 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH-CCCEEEEEEeC
Confidence 677788899999999999999999 99999888855
No 336
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=36.16 E-value=37 Score=32.97 Aligned_cols=40 Identities=15% Similarity=0.153 Sum_probs=30.7
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhh
Q 043168 6 ENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (473)
Q Consensus 6 ~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~~ 51 (473)
+||.|+..|..|. .+|..|.+ .||+|+++......+.+..
T Consensus 3 mkI~IiG~G~mG~-----~~A~~L~~-~G~~V~~~~r~~~~~~~~~ 42 (341)
T PRK08229 3 ARICVLGAGSIGC-----YLGGRLAA-AGADVTLIGRARIGDELRA 42 (341)
T ss_pred ceEEEECCCHHHH-----HHHHHHHh-cCCcEEEEecHHHHHHHHh
Confidence 4899998888875 67899999 9999999986543344444
No 337
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=36.14 E-value=70 Score=30.99 Aligned_cols=44 Identities=18% Similarity=0.205 Sum_probs=31.7
Q ss_pred HHhhhhHHHHHHHhhhhhccCCCCCeEEEeCCCcch-------HH---HHHHHhCCcEEEE
Q 043168 94 STLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAW-------SA---EIAQEYGIFNALF 144 (473)
Q Consensus 94 ~~~~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~~~-------~~---~~A~~~giP~v~~ 144 (473)
..+...+.+.+.++.. +||++|+.+.+-. +. .+.++++||.|+-
T Consensus 64 n~eea~~~i~~mv~~~-------~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vta 117 (349)
T PF07355_consen 64 NKEEALKKILEMVKKL-------KPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTA 117 (349)
T ss_pred CHHHHHHHHHHHHHhc-------CCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEE
Confidence 3345566677888888 9999999886642 21 3566899999875
No 338
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=36.10 E-value=2e+02 Score=28.58 Aligned_cols=40 Identities=15% Similarity=0.220 Sum_probs=30.3
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCC-cEEEEEcCC-cchhhhhh
Q 043168 6 ENIVMFPLMAQGHIIPFLALALHLENTNR-YTITFVNTP-SNLKKLKS 51 (473)
Q Consensus 6 ~~Il~~~~~~~GHv~P~l~LA~~L~~~rG-h~Vt~~~~~-~~~~~v~~ 51 (473)
++|+++..|.-|+ .+|..|.+ +| ++|++++-. .....+..
T Consensus 2 ~~ilviGaG~Vg~-----~va~~la~-~~d~~V~iAdRs~~~~~~i~~ 43 (389)
T COG1748 2 MKILVIGAGGVGS-----VVAHKLAQ-NGDGEVTIADRSKEKCARIAE 43 (389)
T ss_pred CcEEEECCchhHH-----HHHHHHHh-CCCceEEEEeCCHHHHHHHHh
Confidence 4899998877776 57899999 88 999999943 45555544
No 339
>PRK05748 replicative DNA helicase; Provisional
Probab=36.07 E-value=1.3e+02 Score=30.55 Aligned_cols=43 Identities=12% Similarity=0.118 Sum_probs=34.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCcEEEEEcCCcchhhhhh
Q 043168 8 IVMFPLMAQGHIIPFLALALHLE-NTNRYTITFVNTPSNLKKLKS 51 (473)
Q Consensus 8 Il~~~~~~~GHv~P~l~LA~~L~-~~rGh~Vt~~~~~~~~~~v~~ 51 (473)
|++...|+.|-..=.+.+|.... + .|+.|.|++.+-....+..
T Consensus 206 ivIaarpg~GKT~~al~ia~~~a~~-~g~~v~~fSlEms~~~l~~ 249 (448)
T PRK05748 206 IIVAARPSVGKTAFALNIAQNVATK-TDKNVAIFSLEMGAESLVM 249 (448)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHHh-CCCeEEEEeCCCCHHHHHH
Confidence 56777889999999999998875 5 6999999997766655544
No 340
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=36.02 E-value=3.9e+02 Score=28.36 Aligned_cols=122 Identities=11% Similarity=0.022 Sum_probs=62.4
Q ss_pred CceEEEEecCcccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCccchhcccCCchhHHHhhccCCCCeEEecccChHH
Q 043168 262 NSVIYVSFGSQNTIAASQMMQLAMALEACGKNFIWVVKPPLGFDLNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVE 341 (473)
Q Consensus 262 ~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 341 (473)
+|.-|++.|..+.+....=..+-.++...+.+++.++|.+. +.- -..++.-..+ ..-++
T Consensus 419 ~p~~~~~~~~~gsmG~glpaaiGa~lA~p~r~Vv~i~GDG~-------f~m---~~~EL~Ta~r-~~lpv---------- 477 (595)
T PRK09107 419 EPNRWMTSGGLGTMGYGLPAALGVQIAHPDALVIDIAGDAS-------IQM---CIQEMSTAVQ-YNLPV---------- 477 (595)
T ss_pred CCCeEEcCCCchhhhhhHHHHHHHHHhCCCCeEEEEEcCch-------hhc---cHHHHHHHHH-hCCCe----------
Confidence 33455554443333334444555667777788888887652 100 0111111100 01112
Q ss_pred hhcccccceeeeccChhhHHHH--HhcCCCEEecccccchhhhHHHHHHHHcceEEEecccCCccCHHHHHHHHHHHHc
Q 043168 342 ILSHKSISAFLSHCGWNSVLEA--LSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAKFELVMN 418 (473)
Q Consensus 342 lL~~~~~~~~I~HgG~gs~~ea--l~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ai~~~l~ 418 (473)
+-.+++++|+|.+... +.+|.+.... +....++.++..+ +.|..-.+ --+.++|.+++++.+.
T Consensus 478 ------i~vV~NN~~y~~i~~~q~~~~~~~~~~~-~~~~~~d~~~lA~---a~G~~~~~----v~~~~el~~al~~a~~ 542 (595)
T PRK09107 478 ------KIFILNNQYMGMVRQWQQLLHGNRLSHS-YTEAMPDFVKLAE---AYGAVGIR----CEKPGDLDDAIQEMID 542 (595)
T ss_pred ------EEEEEeCCccHHHHHHHHHHhCCccccc-cCCCCCCHHHHHH---HCCCeEEE----ECCHHHHHHHHHHHHh
Confidence 2368999999987532 3345431111 1112356776555 33433322 3478999999999875
No 341
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=36.00 E-value=2.6e+02 Score=23.33 Aligned_cols=97 Identities=11% Similarity=0.072 Sum_probs=59.5
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCC--CcEEEEEcCCcchhhhhhcCCCCCCceEEeccCCCCCCCCCCCCCCCCC
Q 043168 5 KENIVMFPLMAQGHIIPFLALALHLENTN--RYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDS 82 (473)
Q Consensus 5 ~~~Il~~~~~~~GHv~P~l~LA~~L~~~r--Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~ip~~~~~~~l~~~~~~~~~ 82 (473)
+++|++.. .-.+=.-++.+|+.|.. . ||++ ++| +...+.+... .|+.+..+- . + +.
T Consensus 4 ~~~v~lsv--~d~dK~~l~~~a~~l~~-ll~Gf~l-~AT-~gTa~~L~~~----~Gi~v~~vi-~----~-~~------- 61 (142)
T PRK05234 4 RKRIALIA--HDHKKDDLVAWVKAHKD-LLEQHEL-YAT-GTTGGLIQEA----TGLDVTRLL-S----G-PL------- 61 (142)
T ss_pred CcEEEEEE--eccchHHHHHHHHHHHH-HhcCCEE-EEe-ChHHHHHHhc----cCCeeEEEE-c----C-CC-------
Confidence 44666655 44455678899999999 8 9995 344 5666667663 044544331 1 0 00
Q ss_pred CCCCCchHHHHHHhhhhHHHHHHHhhhhhccCCCCCeEEEeCC--Ccc--------hHHHHHHHhCCcEEEE
Q 043168 83 LPFHLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADM--FFA--------WSAEIAQEYGIFNALF 144 (473)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pDlVI~D~--~~~--------~~~~~A~~~giP~v~~ 144 (473)
.-.+.+.++++.. +.|+||.-. ... .-..+|-.++|||++-
T Consensus 62 --------------gg~~~i~~~I~~g-------~i~lVInt~dp~~~~~~~~D~~~IRR~Av~~~IP~~T~ 112 (142)
T PRK05234 62 --------------GGDQQIGALIAEG-------KIDMLIFFRDPLTAQPHDPDVKALLRLADVWNIPVATN 112 (142)
T ss_pred --------------CCchhHHHHHHcC-------ceeEEEEecCCCCCCcccchHHHHHHHHHHcCCCEEcC
Confidence 0113456777777 899999843 221 1234788899999875
No 342
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=35.89 E-value=48 Score=33.43 Aligned_cols=36 Identities=19% Similarity=0.176 Sum_probs=29.0
Q ss_pred HHHHHHHhhhhhccCCCCCeEEEeCCCcchHHHHHHHhCCcEEEEc
Q 043168 100 PHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALFV 145 (473)
Q Consensus 100 ~~l~~~l~~~~~~~~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~~ 145 (473)
..+.+++++. +||++|.... ...+|+++|||++.+.
T Consensus 359 ~e~~~~i~~~-------~pDliig~~~---~~~~a~k~giP~~~~~ 394 (421)
T cd01976 359 YELEEFVKRL-------KPDLIGSGIK---EKYVFQKMGIPFRQMH 394 (421)
T ss_pred HHHHHHHHHh-------CCCEEEecCc---chhhhhhcCCCeEeCC
Confidence 3556777888 9999999874 5667999999998763
No 343
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=35.66 E-value=3.8e+02 Score=25.23 Aligned_cols=39 Identities=8% Similarity=-0.012 Sum_probs=27.8
Q ss_pred CCceEEEEcCC-CccCHH---HHHHHHHHHHhCCCcEEEEEcCC
Q 043168 4 RKENIVMFPLM-AQGHII---PFLALALHLENTNRYTITFVNTP 43 (473)
Q Consensus 4 ~~~~Il~~~~~-~~GHv~---P~l~LA~~L~~~rGh~Vt~~~~~ 43 (473)
+++||++++.+ +.=|-. -...+.++|.+ +||+|.++...
T Consensus 3 ~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~-~g~~v~~i~~~ 45 (304)
T PRK01372 3 MFGKVAVLMGGTSAEREVSLNSGAAVLAALRE-AGYDAHPIDPG 45 (304)
T ss_pred CCcEEEEEeCCCCCCceEeHHhHHHHHHHHHH-CCCEEEEEecC
Confidence 34588877754 222333 55789999999 99999998654
No 344
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=35.53 E-value=83 Score=27.66 Aligned_cols=41 Identities=24% Similarity=0.429 Sum_probs=27.8
Q ss_pred HHHHHHHhhhhhccCCCCCe--EEEeCCCc-chHHHHHHHhCCcEEEEccc
Q 043168 100 PHFRKLINGLIDEQNGHKPV--CIIADMFF-AWSAEIAQEYGIFNALFVGG 147 (473)
Q Consensus 100 ~~l~~~l~~~~~~~~~~~pD--lVI~D~~~-~~~~~~A~~~giP~v~~~~~ 147 (473)
..+.+++++. .++ ++|...+- +.+..+|+.+++|+|.+.|+
T Consensus 47 ~~l~~~i~~~-------~~~~~~liGSSlGG~~A~~La~~~~~~avLiNPa 90 (187)
T PF05728_consen 47 AQLEQLIEEL-------KPENVVLIGSSLGGFYATYLAERYGLPAVLINPA 90 (187)
T ss_pred HHHHHHHHhC-------CCCCeEEEEEChHHHHHHHHHHHhCCCEEEEcCC
Confidence 3456677776 443 55555433 36778999999999988554
No 345
>PRK13196 pyrrolidone-carboxylate peptidase; Provisional
Probab=35.23 E-value=68 Score=28.83 Aligned_cols=26 Identities=12% Similarity=0.087 Sum_probs=20.3
Q ss_pred ceEEEEcCCCcc--CHHHHHHHHHHHHh
Q 043168 6 ENIVMFPLMAQG--HIIPFLALALHLEN 31 (473)
Q Consensus 6 ~~Il~~~~~~~G--Hv~P~l~LA~~L~~ 31 (473)
++||+..+.-+| .+||...++++|..
T Consensus 2 ~~ILvTGF~PF~~~~~NPS~~~~~~L~~ 29 (211)
T PRK13196 2 PTLLLTGFEPFHTHPVNPSAQAAQALNG 29 (211)
T ss_pred CEEEEEeecCCCCCCCCcHHHHHHhccc
Confidence 489888875434 48999999999966
No 346
>PRK07004 replicative DNA helicase; Provisional
Probab=34.78 E-value=1.9e+02 Score=29.50 Aligned_cols=43 Identities=7% Similarity=0.014 Sum_probs=33.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCcEEEEEcCCcchhhhhh
Q 043168 8 IVMFPLMAQGHIIPFLALALHLE-NTNRYTITFVNTPSNLKKLKS 51 (473)
Q Consensus 8 Il~~~~~~~GHv~P~l~LA~~L~-~~rGh~Vt~~~~~~~~~~v~~ 51 (473)
|++..-|+.|-..=.+.+|..+. . .|+.|.|++.+-....+..
T Consensus 216 iviaarpg~GKT~~al~ia~~~a~~-~~~~v~~fSlEM~~~ql~~ 259 (460)
T PRK07004 216 IIVAGRPSMGKTAFSMNIGEYVAVE-YGLPVAVFSMEMPGTQLAM 259 (460)
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHH-cCCeEEEEeCCCCHHHHHH
Confidence 46667789999999999998775 5 6999999997766555443
No 347
>PRK06270 homoserine dehydrogenase; Provisional
Probab=34.69 E-value=3.7e+02 Score=26.14 Aligned_cols=58 Identities=19% Similarity=0.244 Sum_probs=36.5
Q ss_pred ChHHhhcccccceeee------ccC---hhhHHHHHhcCCCEEe---cccccchhhhHHHHHHHHcceEEE
Q 043168 338 PQVEILSHKSISAFLS------HCG---WNSVLEALSHGVPIIG---WPLAAEQFYNSKLLEEVIGVCVEV 396 (473)
Q Consensus 338 p~~~lL~~~~~~~~I~------HgG---~gs~~eal~~GvP~i~---~P~~~DQ~~~a~~v~~~lG~G~~l 396 (473)
...++|..+.++++|- |+| .--+.+||.+|+++|+ -|....-....+...+. |+.+..
T Consensus 80 d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~-g~~~~~ 149 (341)
T PRK06270 80 SGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKN-GVRFRY 149 (341)
T ss_pred CHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHc-CCEEEE
Confidence 4566776666666665 443 4456899999999999 57754333334444444 666554
No 348
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=34.67 E-value=95 Score=23.21 Aligned_cols=36 Identities=11% Similarity=0.088 Sum_probs=28.1
Q ss_pred CceEEEEcCCCc--cCHHHHHHHHHHHHhCCCcEEEEEc
Q 043168 5 KENIVMFPLMAQ--GHIIPFLALALHLENTNRYTITFVN 41 (473)
Q Consensus 5 ~~~Il~~~~~~~--GHv~P~l~LA~~L~~~rGh~Vt~~~ 41 (473)
|.+|+++|.... .+..-...++..|+. .|..|.+-.
T Consensus 1 P~qv~i~p~~~~~~~~~~~a~~la~~Lr~-~g~~v~~d~ 38 (94)
T cd00861 1 PFDVVIIPMNMKDEVQQELAEKLYAELQA-AGVDVLLDD 38 (94)
T ss_pred CeEEEEEEcCCCcHHHHHHHHHHHHHHHH-CCCEEEEEC
Confidence 347888887653 456678899999999 999998754
No 349
>PRK04328 hypothetical protein; Provisional
Probab=34.47 E-value=3.7e+02 Score=24.70 Aligned_cols=43 Identities=7% Similarity=-0.074 Sum_probs=33.1
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhh
Q 043168 7 NIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKLK 50 (473)
Q Consensus 7 ~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~ 50 (473)
-+++...|+.|-..=.+.++..-.. +|+.+.|++.+...+.+.
T Consensus 25 ~ili~G~pGsGKT~l~~~fl~~~~~-~ge~~lyis~ee~~~~i~ 67 (249)
T PRK04328 25 VVLLSGGPGTGKSIFSQQFLWNGLQ-MGEPGVYVALEEHPVQVR 67 (249)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh-cCCcEEEEEeeCCHHHHH
Confidence 4567777899998888888777667 899999999876555443
No 350
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=34.46 E-value=77 Score=20.44 Aligned_cols=27 Identities=33% Similarity=0.461 Sum_probs=18.6
Q ss_pred CHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 043168 405 SKENLSAKFELVMNETEKGMDLRKKASEVE 434 (473)
Q Consensus 405 ~~~~l~~ai~~~l~~~~~~~~~~~~a~~~~ 434 (473)
+.++|..||..+.++. .++++.|+++.
T Consensus 1 tee~l~~Ai~~v~~g~---~S~r~AA~~yg 27 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGK---MSIRKAAKKYG 27 (45)
T ss_dssp -HHHHHHHHHHHHTTS---S-HHHHHHHHT
T ss_pred CHHHHHHHHHHHHhCC---CCHHHHHHHHC
Confidence 4688999999988762 17777776653
No 351
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.37 E-value=95 Score=20.91 Aligned_cols=37 Identities=14% Similarity=0.068 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHhhhhc
Q 043168 425 DLRKKASEVEMIIKNAVRNEEKFKGSSVKAMEQFLDAALMMKKAQ 469 (473)
Q Consensus 425 ~~~~~a~~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 469 (473)
.-.++++++.+.+ ++|-|+..+|.-.-+++++..+.+
T Consensus 12 qQQ~AVE~Iq~lM--------aeGmSsGEAIa~VA~elRe~hk~~ 48 (60)
T COG3140 12 QQQKAVERIQELM--------AEGMSSGEAIALVAQELRENHKGE 48 (60)
T ss_pred HHHHHHHHHHHHH--------HccccchhHHHHHHHHHHHHhccc
Confidence 3455566666666 556667777777667776654433
No 352
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=34.30 E-value=65 Score=29.88 Aligned_cols=37 Identities=14% Similarity=0.127 Sum_probs=32.9
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCC
Q 043168 6 ENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTP 43 (473)
Q Consensus 6 ~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~ 43 (473)
++|.|+.-|+-|-.+=...||..|++ +|++|.++=..
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~-~G~kVlliD~D 38 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAE-MGKKVMIVGCD 38 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHh-CCCeEEEEEcC
Confidence 37888877899999999999999999 99999998644
No 353
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=34.27 E-value=1.1e+02 Score=26.17 Aligned_cols=48 Identities=17% Similarity=0.119 Sum_probs=34.4
Q ss_pred HHHhhhhHHHHHHHhhhhhccCCCCCeEEEeCCCcch---------------HHHHHHHhCCcEEEEccc
Q 043168 93 ESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAW---------------SAEIAQEYGIFNALFVGG 147 (473)
Q Consensus 93 ~~~~~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~~~---------------~~~~A~~~giP~v~~~~~ 147 (473)
..+....+.+.++++.. +||.|+.+..++. ...++...|||+.-+.|.
T Consensus 44 ~Rl~~I~~~l~~~i~~~-------~Pd~vaiE~~f~~~n~~sa~~l~~arGvi~la~~~~~ipv~ey~P~ 106 (164)
T PRK00039 44 ERLKQIYDGLSELIDEY-------QPDEVAIEEVFFNKNPQSALKLGQARGVAILAAAQRGLPVAEYTPL 106 (164)
T ss_pred HHHHHHHHHHHHHHHHh-------CCCEEEEehhhhccChHHHHHHHHHHHHHHHHHHHcCCCEEEECHH
Confidence 45566667889999998 9999987665432 124677889998888544
No 354
>PLN02240 UDP-glucose 4-epimerase
Probab=34.24 E-value=61 Score=31.40 Aligned_cols=36 Identities=19% Similarity=0.201 Sum_probs=25.6
Q ss_pred CCCCCceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEc
Q 043168 1 MAQRKENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVN 41 (473)
Q Consensus 1 m~~~~~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~ 41 (473)
|+++.++|++. |+.|.+ -..|++.|.+ +||+|+.+.
T Consensus 1 ~~~~~~~vlIt--GatG~i--G~~l~~~L~~-~g~~V~~~~ 36 (352)
T PLN02240 1 MSLMGRTILVT--GGAGYI--GSHTVLQLLL-AGYKVVVID 36 (352)
T ss_pred CCCCCCEEEEE--CCCChH--HHHHHHHHHH-CCCEEEEEe
Confidence 66666677664 344544 3467899999 999999886
No 355
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=34.02 E-value=2.1e+02 Score=30.02 Aligned_cols=27 Identities=15% Similarity=0.362 Sum_probs=22.0
Q ss_pred cceeeeccChh------hHHHHHhcCCCEEecc
Q 043168 348 ISAFLSHCGWN------SVLEALSHGVPIIGWP 374 (473)
Q Consensus 348 ~~~~I~HgG~g------s~~eal~~GvP~i~~P 374 (473)
..++++|.|-| .+++|..-++|+|++-
T Consensus 65 ~gv~~~t~GpG~~n~l~~i~~A~~~~~Pvl~i~ 97 (558)
T TIGR00118 65 VGVVLVTSGPGATNLVTGIATAYMDSIPMVVFT 97 (558)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 45788888754 7789999999999984
No 356
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=33.96 E-value=69 Score=30.06 Aligned_cols=37 Identities=11% Similarity=0.128 Sum_probs=33.0
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCC
Q 043168 6 ENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTP 43 (473)
Q Consensus 6 ~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~ 43 (473)
.+|.|+.=|+-|-.+-.+.||..|.+ +|++|.++=-+
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~-~G~rVLliD~D 38 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAE-SGKKVLVVGCD 38 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHh-CCCEEEEEeeC
Confidence 48888888999999999999999999 99999888543
No 357
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=33.92 E-value=62 Score=28.10 Aligned_cols=43 Identities=14% Similarity=0.078 Sum_probs=30.9
Q ss_pred EEEEcCCCccCHHH-HHHHHHHHHhCCCcEEEEEcCCcchhhhhh
Q 043168 8 IVMFPLMAQGHIIP-FLALALHLENTNRYTITFVNTPSNLKKLKS 51 (473)
Q Consensus 8 Il~~~~~~~GHv~P-~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~~ 51 (473)
|+..-.++ ||... .+.+.+.|.+.+||+|.++.++...+.+.-
T Consensus 2 i~~gitGs-g~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~vi~~ 45 (174)
T TIGR02699 2 IAWGITGS-GDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQVVKW 45 (174)
T ss_pred EEEEEEcc-HHHHHHHHHHHHHHHHhcCCEEEEEECHhHHHHHHH
Confidence 44433343 77766 889999998417999999999887765553
No 358
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=33.70 E-value=75 Score=30.20 Aligned_cols=38 Identities=13% Similarity=0.015 Sum_probs=32.4
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCC
Q 043168 5 KENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTP 43 (473)
Q Consensus 5 ~~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~ 43 (473)
+++|.|+.-|+-|-.+-...||..|.+ .|++|.++-.+
T Consensus 4 ~~~iai~~KGGvGKTt~~~nLa~~la~-~g~kVLliD~D 41 (295)
T PRK13234 4 LRQIAFYGKGGIGKSTTSQNTLAALVE-MGQKILIVGCD 41 (295)
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHHH-CCCeEEEEecc
Confidence 346777777899999999999999999 99999999544
No 359
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=33.54 E-value=61 Score=33.66 Aligned_cols=35 Identities=14% Similarity=0.252 Sum_probs=26.8
Q ss_pred HHHHHHhhhhhccCCCCCeEEEeCCCcchHHHHHHHhCCcEEEEc
Q 043168 101 HFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALFV 145 (473)
Q Consensus 101 ~l~~~l~~~~~~~~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~~ 145 (473)
.+.++|++. +||+||.+. ....+|+++|||++.++
T Consensus 365 ei~~~I~~~-------~pdliiGs~---~er~ia~~lgiP~~~is 399 (513)
T CHL00076 365 EVGDMIARV-------EPSAIFGTQ---MERHIGKRLDIPCGVIS 399 (513)
T ss_pred HHHHHHHhc-------CCCEEEECc---hhhHHHHHhCCCEEEee
Confidence 345666666 899999986 34556899999998773
No 360
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=33.46 E-value=2.4e+02 Score=24.77 Aligned_cols=101 Identities=9% Similarity=0.118 Sum_probs=53.4
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCc--EEEEEcCCc-ch---hhhhhcCCCCCCceEEeccCCCCCCCCCCCCCC
Q 043168 6 ENIVMFPLMAQGHIIPFLALALHLENTNRY--TITFVNTPS-NL---KKLKSSLPQNSSIHLREIPFDGIAHDLPPCTEN 79 (473)
Q Consensus 6 ~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh--~Vt~~~~~~-~~---~~v~~~~~~~~~~~~~~ip~~~~~~~l~~~~~~ 79 (473)
+||+++..+..+- +.++.+.+.+ .++ +|.++.+.. .. +...+ .++.+..++.. .+..
T Consensus 1 ~riail~sg~gs~---~~~ll~~~~~-~~l~~~I~~vi~~~~~~~~~~~A~~-----~gip~~~~~~~----~~~~---- 63 (190)
T TIGR00639 1 KRIVVLISGNGSN---LQAIIDACKE-GKIPASVVLVISNKPDAYGLERAAQ-----AGIPTFVLSLK----DFPS---- 63 (190)
T ss_pred CeEEEEEcCCChh---HHHHHHHHHc-CCCCceEEEEEECCccchHHHHHHH-----cCCCEEEECcc----ccCc----
Confidence 3788888665544 4456666776 554 677654332 22 22333 34454433210 1100
Q ss_pred CCCCCCCCchHHHHHHhhhhHHHHHHHhhhhhccCCCCCeEEEeCCCcc-hHHHHHHHhCCcEEEEc
Q 043168 80 SDSLPFHLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFA-WSAEIAQEYGIFNALFV 145 (473)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~~-~~~~~A~~~giP~v~~~ 145 (473)
-....+.+.+++++. +||++|+-.+.. ....+-..+...++-+.
T Consensus 64 ---------------~~~~~~~~~~~l~~~-------~~D~iv~~~~~~il~~~~l~~~~~~~iNiH 108 (190)
T TIGR00639 64 ---------------REAFDQAIIEELRAH-------EVDLVVLAGFMRILGPTFLSRFAGRILNIH 108 (190)
T ss_pred ---------------hhhhhHHHHHHHHhc-------CCCEEEEeCcchhCCHHHHhhccCCEEEEe
Confidence 112234567888888 999998765443 34444455555566653
No 361
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.39 E-value=3.9e+02 Score=24.58 Aligned_cols=42 Identities=21% Similarity=0.090 Sum_probs=31.9
Q ss_pred hhhHHHHHHHhhhhhccCCCCCeEEEeCCCcch---HHHHHHHhCCcEEEE
Q 043168 97 SFKPHFRKLINGLIDEQNGHKPVCIIADMFFAW---SAEIAQEYGIFNALF 144 (473)
Q Consensus 97 ~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~~~---~~~~A~~~giP~v~~ 144 (473)
.-.+.+..+++.+. +-++.+.|..++. +..+|.+.|||++.=
T Consensus 135 sn~~aM~~~m~~Lk------~r~l~flDs~T~a~S~a~~iAk~~gVp~~~r 179 (250)
T COG2861 135 SNEDAMEKLMEALK------ERGLYFLDSGTIANSLAGKIAKEIGVPVIKR 179 (250)
T ss_pred CcHHHHHHHHHHHH------HCCeEEEcccccccchhhhhHhhcCCceeee
Confidence 34456678888874 6799999988873 457899999998863
No 362
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=33.23 E-value=90 Score=25.60 Aligned_cols=35 Identities=26% Similarity=0.187 Sum_probs=21.5
Q ss_pred HHhhcccccceeeeccChhhHHHHHhc----------CCCEEecc
Q 043168 340 VEILSHKSISAFLSHCGWNSVLEALSH----------GVPIIGWP 374 (473)
Q Consensus 340 ~~lL~~~~~~~~I~HgG~gs~~eal~~----------GvP~i~~P 374 (473)
..+|-..+-..++.-||.||+-|.... .+|++.+-
T Consensus 47 k~~m~~~sda~I~lPGG~GTl~El~~~~~~~~l~~~~~~Piil~~ 91 (133)
T PF03641_consen 47 KEIMIESSDAFIALPGGIGTLDELFEALTLMQLGRHNKVPIILLN 91 (133)
T ss_dssp HHHHHHHESEEEEES-SHHHHHHHHHHHHHHHTTSSTS-EEEEEE
T ss_pred HHHHHHhCCEEEEEecCCchHHHHHHHHHHHhhccccCCCEEEeC
Confidence 344333333378889999999887432 44988876
No 363
>PRK08006 replicative DNA helicase; Provisional
Probab=32.81 E-value=2.1e+02 Score=29.35 Aligned_cols=43 Identities=7% Similarity=0.000 Sum_probs=33.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCcEEEEEcCCcchhhhhh
Q 043168 8 IVMFPLMAQGHIIPFLALALHLE-NTNRYTITFVNTPSNLKKLKS 51 (473)
Q Consensus 8 Il~~~~~~~GHv~P~l~LA~~L~-~~rGh~Vt~~~~~~~~~~v~~ 51 (473)
|++..-|+.|-..-.+.+|.... + .|+.|.|++.+-....+..
T Consensus 227 iiIaarPgmGKTafalnia~~~a~~-~g~~V~~fSlEM~~~ql~~ 270 (471)
T PRK08006 227 IIVAARPSMGKTTFAMNLCENAAML-QDKPVLIFSLEMPGEQIMM 270 (471)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHh-cCCeEEEEeccCCHHHHHH
Confidence 46667799999999999998876 5 6999999997765554443
No 364
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=32.72 E-value=3.2e+02 Score=24.47 Aligned_cols=39 Identities=8% Similarity=0.065 Sum_probs=25.4
Q ss_pred HHHHHHhhhhhccCCCCCeEEEeCCCcc-hHHHHHHHhCCcEEEEcc
Q 043168 101 HFRKLINGLIDEQNGHKPVCIIADMFFA-WSAEIAQEYGIFNALFVG 146 (473)
Q Consensus 101 ~l~~~l~~~~~~~~~~~pDlVI~D~~~~-~~~~~A~~~giP~v~~~~ 146 (473)
.+.+.+++. +||+||.-.+.. ....+-..+...++-+.+
T Consensus 69 ~~~~~l~~~-------~~Dliv~agy~~il~~~~l~~~~~~~iNiHp 108 (207)
T PLN02331 69 ELVDALRGA-------GVDFVLLAGYLKLIPVELVRAYPRSILNIHP 108 (207)
T ss_pred HHHHHHHhc-------CCCEEEEeCcchhCCHHHHhhCCCCEEEEeC
Confidence 445667888 999999876544 444455566666666643
No 365
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=32.67 E-value=5.5e+02 Score=26.87 Aligned_cols=62 Identities=16% Similarity=-0.018 Sum_probs=35.7
Q ss_pred eeeeccChhhHHH--HHhcCCCEEecccccchhhhHHHHHHHHcceEEEecccCCccCHHHHHHHHHHHHcC
Q 043168 350 AFLSHCGWNSVLE--ALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAKFELVMNE 419 (473)
Q Consensus 350 ~~I~HgG~gs~~e--al~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ai~~~l~~ 419 (473)
.+++++|++++.. -..++-+..... ...+++.++..+.. |+- -. .--+.+++.+++.+.++.
T Consensus 462 vv~NN~~~~~~~~~q~~~~~~~~~~~~-~~~~~d~~~~a~a~-G~~--~~----~v~~~~~l~~al~~a~~~ 525 (558)
T TIGR00118 462 LILNNRYLGMVRQWQELFYEERYSHTH-MGSLPDFVKLAEAY-GIK--GI----RIEKPEELDEKLKEALSS 525 (558)
T ss_pred EEEeCCchHHHHHHHHHhcCCceeecc-CCCCCCHHHHHHHC-CCe--EE----EECCHHHHHHHHHHHHhC
Confidence 6899999987752 222333322221 12256777766633 543 21 123679999999888753
No 366
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=32.37 E-value=2.9e+02 Score=28.44 Aligned_cols=33 Identities=24% Similarity=0.298 Sum_probs=26.2
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhC-CCcEEEEEcCC
Q 043168 6 ENIVMFPLMAQGHIIPFLALALHLENT-NRYTITFVNTP 43 (473)
Q Consensus 6 ~~Il~~~~~~~GHv~P~l~LA~~L~~~-rGh~Vt~~~~~ 43 (473)
+|||++..+++.| +|+.+|++. +|++|..+..+
T Consensus 1 mkVLviG~Ggreh-----al~~~l~~s~~g~~v~~~~g~ 34 (486)
T PRK05784 1 MKVLLVGDGAREH-----ALAEALEKSTKGYKVYALSSY 34 (486)
T ss_pred CEEEEECCchhHH-----HHHHHHHhCCCCCEEEEEECC
Confidence 3899999998888 678888883 39998888653
No 367
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=32.27 E-value=1.3e+02 Score=29.11 Aligned_cols=32 Identities=16% Similarity=0.140 Sum_probs=28.0
Q ss_pred EcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCC
Q 043168 11 FPLMAQGHIIPFLALALHLENTNRYTITFVNTP 43 (473)
Q Consensus 11 ~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~ 43 (473)
++.|+.|-+--.+.||++|++ ||..+-+++=.
T Consensus 55 ltvGGtGKTP~vi~la~~l~~-rG~~~gvvSRG 86 (336)
T COG1663 55 LTVGGTGKTPVVIWLAEALQA-RGVRVGVVSRG 86 (336)
T ss_pred EEECCCCcCHHHHHHHHHHHh-cCCeeEEEecC
Confidence 456899998889999999999 99999999944
No 368
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=32.23 E-value=2.7e+02 Score=22.37 Aligned_cols=28 Identities=14% Similarity=0.236 Sum_probs=21.2
Q ss_pred CceEEEEecCcccCCHHHHHHHHHHHHh
Q 043168 262 NSVIYVSFGSQNTIAASQMMQLAMALEA 289 (473)
Q Consensus 262 ~~~V~vs~GS~~~~~~~~~~~~~~al~~ 289 (473)
+.+|+++-||........+..+...+++
T Consensus 2 ~~lvlv~hGS~~~~~~~~~~~~~~~l~~ 29 (126)
T PRK00923 2 LGLLLVGHGSRLPYNKEVVTKIAEKIKE 29 (126)
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHH
Confidence 3489999999865445777888888876
No 369
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=31.96 E-value=2e+02 Score=30.10 Aligned_cols=27 Identities=19% Similarity=0.412 Sum_probs=22.0
Q ss_pred cceeeeccChh------hHHHHHhcCCCEEecc
Q 043168 348 ISAFLSHCGWN------SVLEALSHGVPIIGWP 374 (473)
Q Consensus 348 ~~~~I~HgG~g------s~~eal~~GvP~i~~P 374 (473)
.+++++|.|-| .+.+|...++|+|++-
T Consensus 64 ~gv~~~t~GpG~~n~~~~l~~A~~~~~Pvl~i~ 96 (548)
T PRK08978 64 VGVCIATSGPGATNLITGLADALLDSVPVVAIT 96 (548)
T ss_pred CEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 44688888854 7789999999999984
No 370
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=31.82 E-value=71 Score=33.13 Aligned_cols=26 Identities=12% Similarity=0.170 Sum_probs=21.8
Q ss_pred CCeEEEeCCCcchHHHHHHHhCCcEEEEc
Q 043168 117 KPVCIIADMFFAWSAEIAQEYGIFNALFV 145 (473)
Q Consensus 117 ~pDlVI~D~~~~~~~~~A~~~giP~v~~~ 145 (473)
+||+||.+. ....+|+++|||++.+.
T Consensus 364 ~pdliiG~~---~er~~a~~lgip~~~i~ 389 (511)
T TIGR01278 364 EPELVLGTQ---MERHSAKRLDIPCGVIS 389 (511)
T ss_pred CCCEEEECh---HHHHHHHHcCCCEEEec
Confidence 899999986 45677999999998773
No 371
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=31.75 E-value=1e+02 Score=29.11 Aligned_cols=74 Identities=14% Similarity=0.128 Sum_probs=49.8
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCccchhcccCCchhHHHhhccCCCCeEEecccChHHhhcccccceeeec
Q 043168 275 IAASQMMQLAMALEACGKNFIWVVKPPLGFDLNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVEILSHKSISAFLSH 354 (473)
Q Consensus 275 ~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~~~I~H 354 (473)
...+..+.+.+++.+..++.||.+..+. .-..+.++++...+-+++. .||-.
T Consensus 46 s~~~Ra~dL~~a~~d~~i~aI~~~rGG~--------------------------ga~rlL~~ld~~~~~~~pK--~~iGy 97 (282)
T cd07025 46 TDEERAADLNAAFADPEIKAIWCARGGY--------------------------GANRLLPYLDYDLIRANPK--IFVGY 97 (282)
T ss_pred CHHHHHHHHHHHhhCCCCCEEEEcCCcC--------------------------CHHHhhhhCCHHHHhhCCe--EEEEe
Confidence 3456778899999999999999987763 0112335566655555655 57777
Q ss_pred cChhhHHHHHhc--CCCEEecccc
Q 043168 355 CGWNSVLEALSH--GVPIIGWPLA 376 (473)
Q Consensus 355 gG~gs~~eal~~--GvP~i~~P~~ 376 (473)
.-..+++-+++. |++.+.-|..
T Consensus 98 SDiTaL~~~l~~~~g~~t~hGp~~ 121 (282)
T cd07025 98 SDITALHLALYAKTGLVTFHGPML 121 (282)
T ss_pred cHHHHHHHHHHHhcCceEEECccc
Confidence 777777776643 6777666643
No 372
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=31.72 E-value=74 Score=33.09 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=26.5
Q ss_pred HHHHHHhhhhhccCCCCCeEEEeCCCcchHHHHHHHhCCcEEEEc
Q 043168 101 HFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALFV 145 (473)
Q Consensus 101 ~l~~~l~~~~~~~~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~~ 145 (473)
.+.+.+++. +||+||.+. ....+|+++|||++.+.
T Consensus 353 el~~~i~~~-------~PdliiG~~---~er~~a~~lgiP~~~i~ 387 (519)
T PRK02910 353 EVEDAIAEA-------APELVLGTQ---MERHSAKRLGIPCAVIS 387 (519)
T ss_pred HHHHHHHhc-------CCCEEEEcc---hHHHHHHHcCCCEEEec
Confidence 445556666 899999875 45678999999998773
No 373
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=31.49 E-value=80 Score=29.95 Aligned_cols=36 Identities=6% Similarity=0.105 Sum_probs=33.0
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCC
Q 043168 7 NIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTP 43 (473)
Q Consensus 7 ~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~ 43 (473)
||+|..-|+-|-.+-.+.||..|.+ +|++|.++-.+
T Consensus 2 ~ia~~gKGGVGKTTta~nLA~~La~-~G~rVLlID~D 37 (290)
T CHL00072 2 KLAVYGKGGIGKSTTSCNISIALAR-RGKKVLQIGCD 37 (290)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHH-CCCeEEEEecc
Confidence 5899999999999999999999999 99999888754
No 374
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=31.39 E-value=3.5e+02 Score=24.54 Aligned_cols=149 Identities=10% Similarity=0.011 Sum_probs=75.1
Q ss_pred hhccCCCCceEEEEecCcccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCccchhcccCCchhHHHhhccCCCCeEEe
Q 043168 255 WLDTKPCNSVIYVSFGSQNTIAASQMMQLAMALEACGKNFIWVVKPPLGFDLNSEFRANEWLPEGFEERIKDSGQGLVVQ 334 (473)
Q Consensus 255 ~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 334 (473)
|++.. .+.++.|+.|..+ .+++ ..|.+.+..+.++... +.+.+..-.. ...+...
T Consensus 20 ~l~~~-~~~VLVVGGG~VA------~RK~-~~Ll~~gA~VtVVap~---------------i~~el~~l~~--~~~i~~~ 74 (223)
T PRK05562 20 SLLSN-KIKVLIIGGGKAA------FIKG-KTFLKKGCYVYILSKK---------------FSKEFLDLKK--YGNLKLI 74 (223)
T ss_pred EEECC-CCEEEEECCCHHH------HHHH-HHHHhCCCEEEEEcCC---------------CCHHHHHHHh--CCCEEEE
Confidence 44444 3558888777775 2333 4455567776665432 2223322221 2233322
Q ss_pred cccChHHhhcccccceeeeccChhhHHHHH-----hcCCCEEecccccchhhhH-----HHHHHHHcceEEEecccCCcc
Q 043168 335 KWAPQVEILSHKSISAFLSHCGWNSVLEAL-----SHGVPIIGWPLAAEQFYNS-----KLLEEVIGVCVEVARGMNCEV 404 (473)
Q Consensus 335 ~~~p~~~lL~~~~~~~~I~HgG~gs~~eal-----~~GvP~i~~P~~~DQ~~~a-----~~v~~~lG~G~~l~~~~~~~~ 404 (473)
.--.+..-|..+. ++|..-+--.+.+.+ ..|+++.++ |++..+ ..+.+- ++-+.+..++....
T Consensus 75 ~r~~~~~dl~g~~--LViaATdD~~vN~~I~~~a~~~~~lvn~v----d~p~~~dFi~PAiv~rg-~l~IaIST~G~sP~ 147 (223)
T PRK05562 75 KGNYDKEFIKDKH--LIVIATDDEKLNNKIRKHCDRLYKLYIDC----SDYKKGLCIIPYQRSTK-NFVFALNTKGGSPK 147 (223)
T ss_pred eCCCChHHhCCCc--EEEECCCCHHHHHHHHHHHHHcCCeEEEc----CCcccCeEEeeeEEecC-CEEEEEECCCcCcH
Confidence 2212233355544 788777766665544 346776654 332222 223322 34444444222334
Q ss_pred CHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHH
Q 043168 405 SKENLSAKFELVMNETEKGMDLRKKASEVEMIIK 438 (473)
Q Consensus 405 ~~~~l~~ai~~~l~~~~~~~~~~~~a~~~~~~~~ 438 (473)
-+..|++.|+++| .. ...+-+.+.+++..++
T Consensus 148 lar~lR~~ie~~l-~~--~~~l~~~l~~~R~~vk 178 (223)
T PRK05562 148 TSVFIGEKVKNFL-KK--YDDFIEYVTKIRNKAK 178 (223)
T ss_pred HHHHHHHHHHHHH-HH--HHHHHHHHHHHHHHHH
Confidence 4567888888888 22 2356666666666655
No 375
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=31.37 E-value=99 Score=24.67 Aligned_cols=37 Identities=14% Similarity=0.052 Sum_probs=33.1
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCc
Q 043168 7 NIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPS 44 (473)
Q Consensus 7 ~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~ 44 (473)
||++...++.|-..-...+|+.|.+ +|.+|.++....
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~-~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAE-KGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH-CCCcEEEEECCc
Confidence 5888899999999999999999999 999999888665
No 376
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=31.31 E-value=74 Score=32.16 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=27.6
Q ss_pred HHHHHHHhhhhhccCCCCCeEEEeCCCcchHHHHHHHhCCcEEEE
Q 043168 100 PHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALF 144 (473)
Q Consensus 100 ~~l~~~l~~~~~~~~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~ 144 (473)
..+.++++.. +||++|.+.. ...+|+++|||++.+
T Consensus 362 ~e~~~~l~~~-------~~dliiG~s~---~~~~a~~~~ip~~~~ 396 (429)
T cd03466 362 FDIESYAKEL-------KIDVLIGNSY---GRRIAEKLGIPLIRI 396 (429)
T ss_pred HHHHHHHHhc-------CCCEEEECch---hHHHHHHcCCCEEEe
Confidence 3456666666 8999999973 468899999999877
No 377
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=31.24 E-value=1.6e+02 Score=27.73 Aligned_cols=41 Identities=17% Similarity=0.217 Sum_probs=33.0
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhh
Q 043168 5 KENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (473)
Q Consensus 5 ~~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~~ 51 (473)
.++|+++..|..|. .+|+.|++ +||.|.++.-+........
T Consensus 3 ~~~v~IvG~GliG~-----s~a~~l~~-~g~~v~i~g~d~~~~~~~~ 43 (279)
T COG0287 3 SMKVGIVGLGLMGG-----SLARALKE-AGLVVRIIGRDRSAATLKA 43 (279)
T ss_pred CcEEEEECCchHHH-----HHHHHHHH-cCCeEEEEeecCcHHHHHH
Confidence 35899999888887 58999999 9999988887766655544
No 378
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=31.22 E-value=69 Score=27.74 Aligned_cols=29 Identities=21% Similarity=0.061 Sum_probs=20.4
Q ss_pred CCeEEEeCCCcch--HHHHHHHhCCcEEEEc
Q 043168 117 KPVCIIADMFFAW--SAEIAQEYGIFNALFV 145 (473)
Q Consensus 117 ~pDlVI~D~~~~~--~~~~A~~~giP~v~~~ 145 (473)
+||+||....... ....-+..|||++.+.
T Consensus 69 ~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 69 KPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred CCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 8999998654332 3344567999998874
No 379
>PRK13195 pyrrolidone-carboxylate peptidase; Provisional
Probab=31.17 E-value=79 Score=28.67 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=19.0
Q ss_pred eEEEEcCCCcc--CHHHHHHHHHHHHh
Q 043168 7 NIVMFPLMAQG--HIIPFLALALHLEN 31 (473)
Q Consensus 7 ~Il~~~~~~~G--Hv~P~l~LA~~L~~ 31 (473)
|||+..++-+| -+||...++++|..
T Consensus 3 ~ILvTGF~PFgg~~~NPS~~~v~~L~~ 29 (222)
T PRK13195 3 KVLVTGFGPYGVTPVNPAQLTAEELDG 29 (222)
T ss_pred EEEEeeecCCCCCCcCchHHHHHhccc
Confidence 78888875333 48999999999854
No 380
>PRK08617 acetolactate synthase; Reviewed
Probab=31.06 E-value=3.2e+02 Score=28.58 Aligned_cols=27 Identities=19% Similarity=0.297 Sum_probs=21.5
Q ss_pred cceeeeccChh------hHHHHHhcCCCEEecc
Q 043168 348 ISAFLSHCGWN------SVLEALSHGVPIIGWP 374 (473)
Q Consensus 348 ~~~~I~HgG~g------s~~eal~~GvP~i~~P 374 (473)
.+++++|.|-| .+.+|...++|+|++-
T Consensus 68 ~gv~~vt~GpG~~N~l~gl~~A~~~~~Pvlvis 100 (552)
T PRK08617 68 PGVVLVTSGPGVSNLATGLVTATAEGDPVVAIG 100 (552)
T ss_pred CEEEEECCCCcHhHhHHHHHHHhhcCCCEEEEe
Confidence 44677787744 7789999999999984
No 381
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.54 E-value=4.8e+02 Score=24.76 Aligned_cols=41 Identities=24% Similarity=0.287 Sum_probs=31.6
Q ss_pred CCCeEEecccCh---HHhhcccccceeeeccChhhHHHHHhcCCCEE
Q 043168 328 GQGLVVQKWAPQ---VEILSHKSISAFLSHCGWNSVLEALSHGVPII 371 (473)
Q Consensus 328 ~~~v~~~~~~p~---~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~i 371 (473)
+-.+...+|+|| ..+|--|++.+ | =|--|+..|..+|+|.+
T Consensus 237 ~lrvvklPFvpqddyd~LL~lcD~n~-V--RGEDSFVRAq~agkPfl 280 (370)
T COG4394 237 KLRVVKLPFVPQDDYDELLWLCDFNL-V--RGEDSFVRAQLAGKPFL 280 (370)
T ss_pred ceEEEEecCCcHhHHHHHHHhcccce-e--ecchHHHHHHHcCCCcE
Confidence 445667799998 55888888633 3 37789999999999986
No 382
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=30.50 E-value=1.8e+02 Score=27.52 Aligned_cols=26 Identities=19% Similarity=0.156 Sum_probs=20.3
Q ss_pred HHHHHHHHhCCCcEEEEEcCCcchhhh
Q 043168 23 LALALHLENTNRYTITFVNTPSNLKKL 49 (473)
Q Consensus 23 l~LA~~L~~~rGh~Vt~~~~~~~~~~v 49 (473)
.++|..+.+ +|++|.++........-
T Consensus 3 ~a~a~~~a~-~g~~vllv~~Dp~~~l~ 28 (284)
T TIGR00345 3 CATAIRLAE-QGKKVLLVSTDPAHSLS 28 (284)
T ss_pred HHHHHHHHH-CCCeEEEEECCCCCCHH
Confidence 467888999 99999999977655433
No 383
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=30.49 E-value=2.4e+02 Score=29.59 Aligned_cols=27 Identities=19% Similarity=0.366 Sum_probs=21.8
Q ss_pred cceeeeccChh------hHHHHHhcCCCEEecc
Q 043168 348 ISAFLSHCGWN------SVLEALSHGVPIIGWP 374 (473)
Q Consensus 348 ~~~~I~HgG~g------s~~eal~~GvP~i~~P 374 (473)
..++++|.|-| .+.+|.+.++|+|++-
T Consensus 71 ~~v~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 103 (561)
T PRK06048 71 VGVCVATSGPGATNLVTGIATAYMDSVPIVALT 103 (561)
T ss_pred CeEEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 44688888754 6789999999999884
No 384
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=30.40 E-value=71 Score=27.33 Aligned_cols=49 Identities=18% Similarity=0.266 Sum_probs=33.5
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCc--chhhhhhcCCCCCCceEEec
Q 043168 5 KENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPS--NLKKLKSSLPQNSSIHLREI 64 (473)
Q Consensus 5 ~~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~--~~~~v~~~~~~~~~~~~~~i 64 (473)
.++|.++.++++||. -|.-|+. .|++|++..-+. ..+..+. .||+..++
T Consensus 4 ~k~IAViGyGsQG~a-----~AlNLrD-SG~~V~Vglr~~s~s~~~A~~-----~Gf~v~~~ 54 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHA-----HALNLRD-SGVNVIVGLREGSASWEKAKA-----DGFEVMSV 54 (165)
T ss_dssp TSEEEEES-SHHHHH-----HHHHHHH-CC-EEEEEE-TTCHHHHHHHH-----TT-ECCEH
T ss_pred CCEEEEECCChHHHH-----HHHHHHh-CCCCEEEEecCCCcCHHHHHH-----CCCeeccH
Confidence 468999999999994 5778999 999999888544 4555666 45565444
No 385
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=30.27 E-value=2.5e+02 Score=29.66 Aligned_cols=118 Identities=8% Similarity=0.029 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCcEEEEEcCCCCCCCccchhcccCCchhHHHhhccCCCCeEEecccChHHhhccc--------ccceee
Q 043168 281 MQLAMALEACGKNFIWVVKPPLGFDLNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVEILSHK--------SISAFL 352 (473)
Q Consensus 281 ~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~lL~~~--------~~~~~I 352 (473)
+.+++.|++.|++.++-+.+. -...+.+.+. .+++....--.....--.+ ..++++
T Consensus 19 ~~l~~~L~~~GV~~vFGipG~--------------~~~~l~dal~--~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~ 82 (570)
T PRK06725 19 GHVIQCLKKLGVTTVFGYPGG--------------AILPVYDALY--ESGLKHILTRHEQAAIHAAEGYARASGKVGVVF 82 (570)
T ss_pred HHHHHHHHHcCCCEEEEcCCc--------------chHHHHHHHH--hcCCcEEEecCHHHHHHHHHHHHHHhCCCeEEE
Q ss_pred eccChh------hHHHHHhcCCCEEec-------------ccccchhhhHHHHHHHHcceEEEecccCCccCHHHHHHHH
Q 043168 353 SHCGWN------SVLEALSHGVPIIGW-------------PLAAEQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAKF 413 (473)
Q Consensus 353 ~HgG~g------s~~eal~~GvP~i~~-------------P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ai 413 (473)
+|.|-| .+++|.+.++|+|++ -+..||....+-+. ....++.. ..--.+.|.+|+
T Consensus 83 ~t~GpG~~N~~~gla~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~it---k~~~~v~~---~~~i~~~l~~A~ 156 (570)
T PRK06725 83 ATSGPGATNLVTGLADAYMDSIPLVVITGQVATPLIGKDGFQEADVVGITVPVT---KHNYQVRD---VNQLSRIVQEAF 156 (570)
T ss_pred ECCCccHHHHHHHHHHHhhcCcCEEEEecCCCcccccCCCCcccchhhhhhccc---eeEEEcCC---HHHHHHHHHHHH
Q ss_pred HHHHcCC
Q 043168 414 ELVMNET 420 (473)
Q Consensus 414 ~~~l~~~ 420 (473)
+..++.+
T Consensus 157 ~~A~s~~ 163 (570)
T PRK06725 157 YIAESGR 163 (570)
T ss_pred HHHhcCC
No 386
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=30.19 E-value=2.1e+02 Score=27.18 Aligned_cols=52 Identities=10% Similarity=-0.024 Sum_probs=31.4
Q ss_pred hhhhhhhccCCCCceEEEEecCcccCCHHHHHHHHHHHHhCCCcEEEEEcCC
Q 043168 250 ESCKNWLDTKPCNSVIYVSFGSQNTIAASQMMQLAMALEACGKNFIWVVKPP 301 (473)
Q Consensus 250 ~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~ 301 (473)
.++..+....+-+++-.-........+...+..+.+++++.|+.+++-+|..
T Consensus 116 ~E~er~v~~~gf~g~~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~ 167 (293)
T COG2159 116 EELERRVRELGFVGVKLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAG 167 (293)
T ss_pred HHHHHHHHhcCceEEEecccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCC
Confidence 3555555543322222222222233455667889999999999999977765
No 387
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=30.18 E-value=3.4e+02 Score=22.98 Aligned_cols=142 Identities=19% Similarity=0.249 Sum_probs=83.0
Q ss_pred eEEEEecCcccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCccchhcccCCchhHHHhhccCCCCeEEecccChHHhh
Q 043168 264 VIYVSFGSQNTIAASQMMQLAMALEACGKNFIWVVKPPLGFDLNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVEIL 343 (473)
Q Consensus 264 ~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~lL 343 (473)
.|-|-+||.. +.+.++...+.|++.++++-..+.+.+ ..|+.+.+ |+-. .
T Consensus 4 ~V~IIMGS~S--D~~~mk~Aa~~L~~fgi~ye~~VvSAH------------RTPe~m~~-------------ya~~---a 53 (162)
T COG0041 4 KVGIIMGSKS--DWDTMKKAAEILEEFGVPYEVRVVSAH------------RTPEKMFE-------------YAEE---A 53 (162)
T ss_pred eEEEEecCcc--hHHHHHHHHHHHHHcCCCeEEEEEecc------------CCHHHHHH-------------HHHH---H
Confidence 5788899987 778889999999998887755444332 13443322 1111 1
Q ss_pred cccccceeeeccChh---hHHHHHhcCCCEEeccccc---chhhhHHHHHHHHcceEEEec-ccCCccCHHHHHHHHHHH
Q 043168 344 SHKSISAFLSHCGWN---SVLEALSHGVPIIGWPLAA---EQFYNSKLLEEVIGVCVEVAR-GMNCEVSKENLSAKFELV 416 (473)
Q Consensus 344 ~~~~~~~~I~HgG~g---s~~eal~~GvP~i~~P~~~---DQ~~~a~~v~~~lG~G~~l~~-~~~~~~~~~~l~~ai~~~ 416 (473)
....++.+|.-.|.- .=+-|-..=+|+|++|... +-.+---.+++. --|+-+.. ...+..++.-++..|- .
T Consensus 54 ~~~g~~viIAgAGgAAHLPGmvAa~T~lPViGVPv~s~~L~GlDSL~SiVQM-P~GvPVaTvaIg~a~NAallAa~IL-a 131 (162)
T COG0041 54 EERGVKVIIAGAGGAAHLPGMVAAKTPLPVIGVPVQSKALSGLDSLLSIVQM-PAGVPVATVAIGNAANAALLAAQIL-A 131 (162)
T ss_pred HHCCCeEEEecCcchhhcchhhhhcCCCCeEeccCccccccchHHHHHHhcC-CCCCeeEEEeecchhhHHHHHHHHH-c
Confidence 112344466544421 1123445579999999863 333333445544 55543322 1113456666666663 4
Q ss_pred HcCChhhHHHHHHHHHHHHHHHHhh
Q 043168 417 MNETEKGMDLRKKASEVEMIIKNAV 441 (473)
Q Consensus 417 l~~~~~~~~~~~~a~~~~~~~~~a~ 441 (473)
+.|+ .++++..++++..++.+
T Consensus 132 ~~d~----~l~~kl~~~r~~~~~~V 152 (162)
T COG0041 132 IKDP----ELAEKLAEFREAQTEEV 152 (162)
T ss_pred CCCH----HHHHHHHHHHHHHHHHH
Confidence 4567 79999999999988665
No 388
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=30.16 E-value=69 Score=31.89 Aligned_cols=45 Identities=11% Similarity=0.050 Sum_probs=36.1
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhh
Q 043168 5 KENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (473)
Q Consensus 5 ~~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~~ 51 (473)
.+||++...|+.|= .-.+.+.+.|++ .|++|.++.++...+.+..
T Consensus 3 ~k~IllgiTGSiaa-~~~~~ll~~L~~-~g~~V~vv~T~~A~~fv~~ 47 (390)
T TIGR00521 3 NKKILLGVTGGIAA-YKTVELVRELVR-QGAEVKVIMTEAAKKFITP 47 (390)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHHHh-CCCEEEEEECHhHHHHHHH
Confidence 45887777665554 558999999999 9999999999887777764
No 389
>PRK13197 pyrrolidone-carboxylate peptidase; Provisional
Probab=30.03 E-value=98 Score=27.91 Aligned_cols=26 Identities=19% Similarity=0.175 Sum_probs=20.0
Q ss_pred ceEEEEcCCCcc--CHHHHHHHHHHHHh
Q 043168 6 ENIVMFPLMAQG--HIIPFLALALHLEN 31 (473)
Q Consensus 6 ~~Il~~~~~~~G--Hv~P~l~LA~~L~~ 31 (473)
++||+..+.-+| ..||...++++|..
T Consensus 2 ~~ILvTGF~PF~~~~~NPS~~~~~~L~~ 29 (215)
T PRK13197 2 MKILVTGFDPFGGEKINPSWEAVKQLPG 29 (215)
T ss_pred CEEEEeeccCCCCCCCCcHHHHHHHccc
Confidence 378888876443 48899999999955
No 390
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=29.94 E-value=76 Score=28.10 Aligned_cols=41 Identities=12% Similarity=0.142 Sum_probs=33.1
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchh
Q 043168 6 ENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLK 47 (473)
Q Consensus 6 ~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~ 47 (473)
.-|+|+...+-|-.+-...||..++. +|.+|.+++.+.++.
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~-~~~~v~lis~D~~R~ 42 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKL-KGKKVALISADTYRI 42 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHH-TT--EEEEEESTSST
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhh-ccccceeecCCCCCc
Confidence 34677777799999999999999999 899999999776543
No 391
>PF01470 Peptidase_C15: Pyroglutamyl peptidase This is family C15 in the peptidase classification. ; InterPro: IPR000816 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C15 (pyroglutamyl peptidase I, clan CF). The type example being pyroglutamyl peptidase I of Bacillus amyloliquefaciens. Pyroglutamyl/pyrrolidone carboxyl peptidase (Pcp or PYRase) is an exopeptidase that hydrolytically removes the pGlu from pGlu-peptides or pGlu-proteins [, ]. PYRase has been found in prokaryotes and eukaryotes where at least two different classes have been characterised: the first containing bacterial and animal type I PYRases, and the second containing animal type II and serum PYRases. Type I and bacterial PYRases are soluble enzymes, while type II PYRases are membrane-bound. The primary application of PYRase has been its utilisation for protein or peptide sequencing, and bacterial diagnosis []. The conserved residues Cys-144 and His-168 have been identified by inhibition and mutagenesis studies [, ].; GO: 0006508 proteolysis; PDB: 1A2Z_A 1IU8_A 3RNZ_A 3RO0_D 1AUG_D 2EBJ_A 3LAC_A 1X12_B 1Z8X_B 1X10_C ....
Probab=29.87 E-value=65 Score=28.72 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=17.6
Q ss_pred ceEEEEcCCCcc--CHHHHHHHHHHHHh
Q 043168 6 ENIVMFPLMAQG--HIIPFLALALHLEN 31 (473)
Q Consensus 6 ~~Il~~~~~~~G--Hv~P~l~LA~~L~~ 31 (473)
+||++..++-+| -.||...+++.|..
T Consensus 1 m~ILvTGFgpF~~~~~NpS~~~v~~L~~ 28 (202)
T PF01470_consen 1 MRILVTGFGPFGGVPVNPSWELVKRLPG 28 (202)
T ss_dssp EEEEEEEE-S-TT-SS-HHHHHHHHHTT
T ss_pred CEEEEecccCCCCCCCChHHHHHHHcCC
Confidence 478877775334 37899999999965
No 392
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=29.84 E-value=66 Score=28.85 Aligned_cols=35 Identities=14% Similarity=0.160 Sum_probs=31.0
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcC
Q 043168 7 NIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNT 42 (473)
Q Consensus 7 ~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~ 42 (473)
=|++..+|+.|-..-.-.||++|.. ++|+|..++.
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~-~i~~vi~l~k 37 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQ-EIWRVIHLEK 37 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHH-hhhhccccch
Confidence 4677778999999999999999999 9999987773
No 393
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=29.76 E-value=2.9e+02 Score=29.14 Aligned_cols=27 Identities=15% Similarity=0.313 Sum_probs=21.9
Q ss_pred cceeeeccChh------hHHHHHhcCCCEEecc
Q 043168 348 ISAFLSHCGWN------SVLEALSHGVPIIGWP 374 (473)
Q Consensus 348 ~~~~I~HgG~g------s~~eal~~GvP~i~~P 374 (473)
.+++++|.|-| .+++|...++|+|++-
T Consensus 68 ~gv~~~t~GpG~~n~l~gia~A~~~~~Pvl~i~ 100 (572)
T PRK08979 68 VGVVLVTSGPGATNTITGIATAYMDSIPMVVLS 100 (572)
T ss_pred CeEEEECCCchHhHHHHHHHHHhhcCCCEEEEe
Confidence 55678888855 6789999999999884
No 394
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=29.73 E-value=1.8e+02 Score=25.74 Aligned_cols=105 Identities=22% Similarity=0.223 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEcCCCCCCCccchhcccCCchhHHHhhccCCCCeEEecccChHHhhcccccceeeeccC
Q 043168 277 ASQMMQLAMALEACGKNFIWVVKPPLGFDLNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVEILSHKSISAFLSHCG 356 (473)
Q Consensus 277 ~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~~~I~HgG 356 (473)
.++-+++.+.+...+..+++..|.= --+...|.+++. ..-+- -||+ +.=.++|
T Consensus 65 ~~~d~~l~~~l~~~~~dlvvLAGyM------------rIL~~~fl~~~~--grIlN-----------IHPS--LLP~f~G 117 (200)
T COG0299 65 EAFDRALVEALDEYGPDLVVLAGYM------------RILGPEFLSRFE--GRILN-----------IHPS--LLPAFPG 117 (200)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcchH------------HHcCHHHHHHhh--cceEe-----------cCcc--cccCCCC
Confidence 3455678888888888887766533 125566666654 22111 2667 5777899
Q ss_pred hhhHHHHHhcCCCEEeccccc--chhhhHHHHHHHHcceEEEecccCCccCHHHHHHHHHH
Q 043168 357 WNSVLEALSHGVPIIGWPLAA--EQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAKFEL 415 (473)
Q Consensus 357 ~gs~~eal~~GvP~i~~P~~~--DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ai~~ 415 (473)
..+..+|+.+|+..-++-.++ +..+-+--+. ...+.+.. .-|.+.+.+.|.+
T Consensus 118 ~h~~~~A~~aG~k~sG~TVH~V~e~vD~GpII~---Q~~Vpv~~----~Dt~etl~~RV~~ 171 (200)
T COG0299 118 LHAHEQALEAGVKVSGCTVHFVTEGVDTGPIIA---QAAVPVLP----GDTAETLEARVLE 171 (200)
T ss_pred chHHHHHHHcCCCccCcEEEEEccCCCCCCeEE---EEeeeecC----CCCHHHHHHHHHH
Confidence 999999999999986554332 2222222222 22333332 3378888888765
No 395
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=29.48 E-value=82 Score=32.65 Aligned_cols=44 Identities=9% Similarity=-0.051 Sum_probs=35.4
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhh
Q 043168 7 NIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (473)
Q Consensus 7 ~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~~ 51 (473)
-+++...++.|-..=...++..... .|..|.|++.+...+.+..
T Consensus 275 ~~li~G~~G~GKT~l~~~~~~~~~~-~g~~~~yis~e~~~~~i~~ 318 (509)
T PRK09302 275 IILVSGATGTGKTLLASKFAEAACR-RGERCLLFAFEESRAQLIR 318 (509)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh-CCCcEEEEEecCCHHHHHH
Confidence 4567777899999999999988888 8999999998766555543
No 396
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=29.47 E-value=57 Score=31.16 Aligned_cols=37 Identities=27% Similarity=0.360 Sum_probs=29.4
Q ss_pred hhcccccceeeeccChhhHHHHHh----cCCCEEecccccc
Q 043168 342 ILSHKSISAFLSHCGWNSVLEALS----HGVPIIGWPLAAE 378 (473)
Q Consensus 342 lL~~~~~~~~I~HgG~gs~~eal~----~GvP~i~~P~~~D 378 (473)
.|..-.++.+|.=||.+|..-|.. +++|+|++|-..|
T Consensus 86 ~l~~~~Id~Li~IGGdgs~~~a~~L~e~~~i~vigiPkTID 126 (301)
T TIGR02482 86 NLKKLGIEGLVVIGGDGSYTGAQKLYEEGGIPVIGLPGTID 126 (301)
T ss_pred HHHHcCCCEEEEeCCchHHHHHHHHHHhhCCCEEeeccccc
Confidence 355557889999999999977753 7999999997544
No 397
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=29.46 E-value=1e+02 Score=28.76 Aligned_cols=39 Identities=8% Similarity=0.089 Sum_probs=30.0
Q ss_pred hHHHHHHHhhhhhccCCCCCeEEEeCCCcc------hHHHHHHHhCCcEEEE
Q 043168 99 KPHFRKLINGLIDEQNGHKPVCIIADMFFA------WSAEIAQEYGIFNALF 144 (473)
Q Consensus 99 ~~~l~~~l~~~~~~~~~~~pDlVI~D~~~~------~~~~~A~~~giP~v~~ 144 (473)
...+.+.++.. ++|+|++.--.. .+..+|+.+|+|++.+
T Consensus 100 a~~Laa~~~~~-------~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~ 144 (260)
T COG2086 100 AKALAAAVKKI-------GPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTY 144 (260)
T ss_pred HHHHHHHHHhc-------CCCEEEEecccccCCccchHHHHHHHhCCceeee
Confidence 34567788888 899999643332 4678999999999987
No 398
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=29.24 E-value=96 Score=28.58 Aligned_cols=37 Identities=14% Similarity=0.057 Sum_probs=31.1
Q ss_pred ceEEEEcC-CCccCHHHHHHHHHHHHhCCCcEEEEEcCC
Q 043168 6 ENIVMFPL-MAQGHIIPFLALALHLENTNRYTITFVNTP 43 (473)
Q Consensus 6 ~~Il~~~~-~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~ 43 (473)
+.|++.+. |+-|-.+=..+||..|++ .|++|+.+=-.
T Consensus 2 ~~iai~s~kGGvG~TTltAnLA~aL~~-~G~~VlaID~d 39 (243)
T PF06564_consen 2 KVIAIVSPKGGVGKTTLTANLAWALAR-LGESVLAIDLD 39 (243)
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHHHH-CCCcEEEEeCC
Confidence 36766664 799999999999999999 99999888643
No 399
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=29.23 E-value=73 Score=27.27 Aligned_cols=37 Identities=14% Similarity=0.196 Sum_probs=31.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcc
Q 043168 8 IVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSN 45 (473)
Q Consensus 8 Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~ 45 (473)
+-|+.+-..|-..=+-.|.+.|++ +||+|..+-+...
T Consensus 5 l~ivG~k~SGKTTLie~lv~~L~~-~G~rVa~iKH~hh 41 (161)
T COG1763 5 LGIVGYKNSGKTTLIEKLVRKLKA-RGYRVATVKHAHH 41 (161)
T ss_pred EEEEecCCCChhhHHHHHHHHHHh-CCcEEEEEEecCC
Confidence 456666799999999999999999 9999999985543
No 400
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=29.18 E-value=1.6e+02 Score=24.79 Aligned_cols=75 Identities=16% Similarity=0.202 Sum_probs=48.6
Q ss_pred hcCCCEEecccccchhhhHHHHHHHHcceEEEecccCCccCHHHHHHHHHHHHcC-ChhhHHHHHHHHHHHHHHHHhhhh
Q 043168 365 SHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAKFELVMNE-TEKGMDLRKKASEVEMIIKNAVRN 443 (473)
Q Consensus 365 ~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ai~~~l~~-~~~~~~~~~~a~~~~~~~~~a~~~ 443 (473)
.+|+| .|....+..+|+.+.+. --++. .-..+.+.+.+.+++.| | .-+-++.+++..+.++.
T Consensus 73 ~CGkp---yPWt~~~L~aa~el~ee-~eeLs-------~deke~~~~sl~dL~~d~P----kT~vA~~rfKk~~~K~g-- 135 (158)
T PF10083_consen 73 NCGKP---YPWTENALEAANELIEE-DEELS-------PDEKEQFKESLPDLTKDTP----KTKVAATRFKKILSKAG-- 135 (158)
T ss_pred hCCCC---CchHHHHHHHHHHHHHH-hhcCC-------HHHHHHHHhhhHHHhhcCC----ccHHHHHHHHHHHHHHh--
Confidence 34555 78888888888877754 11111 12447889999999865 4 56777888888888763
Q ss_pred hhccCCChHHHHHHHHHH
Q 043168 444 EEKFKGSSVKAMEQFLDA 461 (473)
Q Consensus 444 ~~~~~g~~~~~~~~~~~~ 461 (473)
.+...++..++-+
T Consensus 136 -----~~v~~~~~dIlVd 148 (158)
T PF10083_consen 136 -----SIVGDAIRDILVD 148 (158)
T ss_pred -----HHHHHHHHHHHHH
Confidence 3344555544444
No 401
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=29.13 E-value=84 Score=31.73 Aligned_cols=33 Identities=18% Similarity=0.232 Sum_probs=25.1
Q ss_pred HHHHHhhhhhccCCCCCeEEEeCCCcchHHHHHHHhCCcEEEE
Q 043168 102 FRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALF 144 (473)
Q Consensus 102 l~~~l~~~~~~~~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~ 144 (473)
+.++++.. +||+||.+. ....+|+++|+|++.+
T Consensus 362 ~~~~i~~~-------~pdliig~~---~~~~~a~~~gip~~~~ 394 (430)
T cd01981 362 VGDMIART-------EPELIFGTQ---MERHIGKRLDIPCAVI 394 (430)
T ss_pred HHHHHHhh-------CCCEEEecc---hhhHHHHHcCCCEEEE
Confidence 44555555 899999986 2455689999999887
No 402
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=29.02 E-value=3.8e+02 Score=23.10 Aligned_cols=60 Identities=17% Similarity=0.081 Sum_probs=33.6
Q ss_pred eeeeccChhhHHH--HHhcCCCEEecccccchhhhHHHHHHHHcceEEEecccCCccCHHHHHHHHHHHHcC
Q 043168 350 AFLSHCGWNSVLE--ALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAKFELVMNE 419 (473)
Q Consensus 350 ~~I~HgG~gs~~e--al~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ai~~~l~~ 419 (473)
.+++++|+|.+.. ....+.+ ... ..+.++.++..+ .+|+ .-.. -.+.+++.+++++.++.
T Consensus 98 vV~NN~~~g~~~~~~~~~~~~~-~~~--~~~~~d~~~~a~-a~G~--~~~~----v~~~~el~~al~~a~~~ 159 (177)
T cd02010 98 LIWNDNGYGLIKWKQEKEYGRD-SGV--DFGNPDFVKYAE-SFGA--KGYR----IESADDLLPVLERALAA 159 (177)
T ss_pred EEEECCcchHHHHHHHHhcCCc-ccC--cCCCCCHHHHHH-HCCC--EEEE----ECCHHHHHHHHHHHHhC
Confidence 5789999998742 1222222 111 112345555444 3354 3322 34789999999988864
No 403
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=28.99 E-value=1.3e+02 Score=26.11 Aligned_cols=37 Identities=14% Similarity=-0.002 Sum_probs=26.9
Q ss_pred HHHHHHhhhhhccCCCCCeEEEeCCC--cchHHHHHHHhCCcEEEE
Q 043168 101 HFRKLINGLIDEQNGHKPVCIIADMF--FAWSAEIAQEYGIFNALF 144 (473)
Q Consensus 101 ~l~~~l~~~~~~~~~~~pDlVI~D~~--~~~~~~~A~~~giP~v~~ 144 (473)
.+.+.+... ++|.|++=.. ...|..+|.++|+|+|.+
T Consensus 44 ~~~~~~~~~-------~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~v 82 (179)
T COG0503 44 ELAERYKDD-------GIDKIVTIEARGIPLAAAVALELGVPFVPV 82 (179)
T ss_pred HHHHHhccc-------CCCEEEEEccccchhHHHHHHHhCCCEEEE
Confidence 444555555 7999985332 346888999999999987
No 404
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=28.91 E-value=82 Score=31.80 Aligned_cols=35 Identities=14% Similarity=0.077 Sum_probs=27.4
Q ss_pred HHHHHHHhhhhhccCCCCCeEEEeCCCcchHHHHHHHhCCcEEEE
Q 043168 100 PHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALF 144 (473)
Q Consensus 100 ~~l~~~l~~~~~~~~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~ 144 (473)
.++.+++++. +||+||.+.. ...+|+++|+|++.+
T Consensus 361 ~el~~~i~~~-------~pdliig~~~---~~~~a~~~~ip~i~~ 395 (428)
T cd01965 361 WDLESLAKEE-------PVDLLIGNSH---GRYLARDLGIPLVRV 395 (428)
T ss_pred HHHHHHhhcc-------CCCEEEECch---hHHHHHhcCCCEEEe
Confidence 3455667777 8999999973 367788999999876
No 405
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=28.88 E-value=1.1e+02 Score=29.34 Aligned_cols=73 Identities=11% Similarity=-0.020 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCccchhcccCCchhHHHhhccCCCCeEEecccChHHhhcccccceeeecc
Q 043168 276 AASQMMQLAMALEACGKNFIWVVKPPLGFDLNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVEILSHKSISAFLSHC 355 (473)
Q Consensus 276 ~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~~~I~Hg 355 (473)
..+....+.+++.+..++.||.+..+. .-..+.++++...+-.++. .||-..
T Consensus 51 ~~~Ra~dL~~a~~Dp~i~aI~~~rGG~--------------------------g~~rlL~~lD~~~i~~~PK--~fiGyS 102 (308)
T cd07062 51 PEERAEELMAAFADPSIKAIIPTIGGD--------------------------DSNELLPYLDYELIKKNPK--IFIGYS 102 (308)
T ss_pred HHHHHHHHHHHhcCCCCCEEEECCccc--------------------------CHhhhhhhcCHHHHhhCCC--EEEecc
Confidence 456678899999999999999987662 1112345566555555554 577666
Q ss_pred ChhhHHHHHh--cCCCEEecccc
Q 043168 356 GWNSVLEALS--HGVPIIGWPLA 376 (473)
Q Consensus 356 G~gs~~eal~--~GvP~i~~P~~ 376 (473)
-..+++-+++ +|.+.+.-|..
T Consensus 103 DiTaL~~al~~~~g~~t~hGp~~ 125 (308)
T cd07062 103 DITALHLAIYKKTGLVTYYGPNL 125 (308)
T ss_pred HHHHHHHHHHHhcCCeEEECccc
Confidence 6666666663 36666665643
No 406
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=28.86 E-value=2e+02 Score=25.25 Aligned_cols=38 Identities=21% Similarity=0.228 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhCCCcEEEEEcCCcchhhhhhcCCCCCCceEEecc
Q 043168 20 IPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIP 65 (473)
Q Consensus 20 ~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~ip 65 (473)
.-++.+|+.|.+ .|+++. .+....+.++. .|+.+..+.
T Consensus 11 ~~l~~lAk~L~~-lGf~I~--AT~GTAk~L~e-----~GI~v~~V~ 48 (187)
T cd01421 11 TGLVEFAKELVE-LGVEIL--STGGTAKFLKE-----AGIPVTDVS 48 (187)
T ss_pred ccHHHHHHHHHH-CCCEEE--EccHHHHHHHH-----cCCeEEEhh
Confidence 457899999999 999984 44567778887 455666554
No 407
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=28.79 E-value=3.2e+02 Score=28.79 Aligned_cols=27 Identities=15% Similarity=0.267 Sum_probs=22.1
Q ss_pred cceeeeccChh------hHHHHHhcCCCEEecc
Q 043168 348 ISAFLSHCGWN------SVLEALSHGVPIIGWP 374 (473)
Q Consensus 348 ~~~~I~HgG~g------s~~eal~~GvP~i~~P 374 (473)
..++++|.|-| .+.+|...++|+|++-
T Consensus 68 ~gv~~vt~GPG~~N~l~gl~~A~~~~~Pvl~i~ 100 (574)
T PRK06466 68 TGVVLVTSGPGATNAITGIATAYMDSIPMVVLS 100 (574)
T ss_pred CEEEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 45788888744 7889999999999984
No 408
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=28.73 E-value=1e+02 Score=27.39 Aligned_cols=41 Identities=10% Similarity=0.008 Sum_probs=31.6
Q ss_pred hhhHHHHHHHhhhhhccCCCCCeEEEeCCCc------chHHHHHHHhCCcEEEE
Q 043168 97 SFKPHFRKLINGLIDEQNGHKPVCIIADMFF------AWSAEIAQEYGIFNALF 144 (473)
Q Consensus 97 ~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~------~~~~~~A~~~giP~v~~ 144 (473)
.+.+.+.++++.. .||+|+.-... ..+..+|.++|.|++.=
T Consensus 95 ~~a~al~~~i~~~-------~p~lVL~~~t~~~~~grdlaprlAarLga~lvsd 141 (202)
T cd01714 95 ATAKALAAAIKKI-------GVDLILTGKQSIDGDTGQVGPLLAELLGWPQITY 141 (202)
T ss_pred HHHHHHHHHHHHh-------CCCEEEEcCCcccCCcCcHHHHHHHHhCCCccce
Confidence 4445566777777 89999988766 36788999999998764
No 409
>PRK10637 cysG siroheme synthase; Provisional
Probab=28.69 E-value=6.3e+02 Score=25.73 Aligned_cols=147 Identities=12% Similarity=0.054 Sum_probs=74.3
Q ss_pred CCceEEEEecCcccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCccchhcccCCchhHHHhhccCCCCeEEecccChH
Q 043168 261 CNSVIYVSFGSQNTIAASQMMQLAMALEACGKNFIWVVKPPLGFDLNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQV 340 (473)
Q Consensus 261 ~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 340 (473)
.+.++.|+.|..+. +++ +.|.+.+.++.++.. . +.+++.+-.. ..++....---+.
T Consensus 12 ~~~vlvvGgG~vA~------rk~-~~ll~~ga~v~visp-~--------------~~~~~~~l~~--~~~i~~~~~~~~~ 67 (457)
T PRK10637 12 DRDCLLVGGGDVAE------RKA-RLLLDAGARLTVNAL-A--------------FIPQFTAWAD--AGMLTLVEGPFDE 67 (457)
T ss_pred CCEEEEECCCHHHH------HHH-HHHHHCCCEEEEEcC-C--------------CCHHHHHHHh--CCCEEEEeCCCCh
Confidence 36688888887762 333 445556777655432 2 2233332222 2333332222233
Q ss_pred HhhcccccceeeeccChhhHHHHH-----hcCCCEEecccccchhhhH-----HHHHHHHcceEEEecccCCccCHHHHH
Q 043168 341 EILSHKSISAFLSHCGWNSVLEAL-----SHGVPIIGWPLAAEQFYNS-----KLLEEVIGVCVEVARGMNCEVSKENLS 410 (473)
Q Consensus 341 ~lL~~~~~~~~I~HgG~gs~~eal-----~~GvP~i~~P~~~DQ~~~a-----~~v~~~lG~G~~l~~~~~~~~~~~~l~ 410 (473)
..+..+. ++|.--+--.+.+.+ ..|+++-++ |++..+ ..+.+. ++-+.+..+.....-+..|+
T Consensus 68 ~dl~~~~--lv~~at~d~~~n~~i~~~a~~~~~lvN~~----d~~~~~~f~~pa~~~~g-~l~iaisT~G~sP~~a~~lr 140 (457)
T PRK10637 68 SLLDTCW--LAIAATDDDAVNQRVSEAAEARRIFCNVV----DAPKAASFIMPSIIDRS-PLMVAVSSGGTSPVLARLLR 140 (457)
T ss_pred HHhCCCE--EEEECCCCHHHhHHHHHHHHHcCcEEEEC----CCcccCeEEEeeEEecC-CEEEEEECCCCCcHHHHHHH
Confidence 4455544 566666655554433 456666443 332222 222222 34445544222234446788
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHHHHHHHh
Q 043168 411 AKFELVMNETEKGMDLRKKASEVEMIIKNA 440 (473)
Q Consensus 411 ~ai~~~l~~~~~~~~~~~~a~~~~~~~~~a 440 (473)
+.|.+++... ...|-+.+.++++.+++.
T Consensus 141 ~~ie~~~~~~--~~~~~~~~~~~R~~~k~~ 168 (457)
T PRK10637 141 EKLESLLPQH--LGQVAKYAGQLRGRVKQQ 168 (457)
T ss_pred HHHHHhcchh--HHHHHHHHHHHHHHHHHh
Confidence 8888887433 345666677777777654
No 410
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=28.66 E-value=3.2e+02 Score=28.79 Aligned_cols=27 Identities=15% Similarity=0.316 Sum_probs=22.0
Q ss_pred cceeeeccChh------hHHHHHhcCCCEEecc
Q 043168 348 ISAFLSHCGWN------SVLEALSHGVPIIGWP 374 (473)
Q Consensus 348 ~~~~I~HgG~g------s~~eal~~GvP~i~~P 374 (473)
.+++++|.|-| .+++|.+.++|+|++-
T Consensus 68 ~gv~~~t~GPG~~n~l~gi~~A~~~~~Pvl~i~ 100 (574)
T PRK07979 68 VGVVLVTSGPGATNAITGIATAYMDSIPLVVLS 100 (574)
T ss_pred ceEEEECCCccHhhhHHHHHHHhhcCCCEEEEE
Confidence 55788888855 5789999999999984
No 411
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=28.35 E-value=6.6e+02 Score=26.48 Aligned_cols=61 Identities=11% Similarity=0.177 Sum_probs=35.9
Q ss_pred eeeeccChhhHH-HHHhcCCCEEecccccchhhhHHHHHHHHcceEEEecccCCccCHHHHHHHHHHHHcC
Q 043168 350 AFLSHCGWNSVL-EALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAKFELVMNE 419 (473)
Q Consensus 350 ~~I~HgG~gs~~-eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ai~~~l~~ 419 (473)
.+++++|+|.+. +....|.+...+ ....++.++..+ .+|+--.. --+.++|.+++++.++.
T Consensus 458 vV~NN~~~g~i~~~q~~~~~~~~~~--~~~~~df~~lA~-a~G~~~~~------v~~~~el~~al~~a~~~ 519 (578)
T PRK06546 458 VVFNNSTLGMVKLEMLVDGLPDFGT--DHPPVDYAAIAA-ALGIHAVR------VEDPKDVRGALREAFAH 519 (578)
T ss_pred EEEECCccccHHHHHHhcCCCcccc--cCCCCCHHHHHH-HCCCeeEE------eCCHHHHHHHHHHHHhC
Confidence 689999999874 222334332111 123456666655 33653221 23789999999998743
No 412
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=28.18 E-value=72 Score=27.75 Aligned_cols=45 Identities=22% Similarity=0.373 Sum_probs=34.5
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhh
Q 043168 5 KENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKLK 50 (473)
Q Consensus 5 ~~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~ 50 (473)
...++|+..++.|-..=..++|.++.. .|+.|.|++.+.....+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~-~g~~v~f~~~~~L~~~l~ 91 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIR-KGYSVLFITASDLLDELK 91 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHH-TT--EEEEEHHHHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhcc-CCcceeEeecCceecccc
Confidence 457888888899988889999999999 999999999775554444
No 413
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=28.06 E-value=1.5e+02 Score=26.19 Aligned_cols=28 Identities=14% Similarity=-0.070 Sum_probs=22.0
Q ss_pred CCeEEEeCCC--cchHHHHHHHhCCcEEEE
Q 043168 117 KPVCIIADMF--FAWSAEIAQEYGIFNALF 144 (473)
Q Consensus 117 ~pDlVI~D~~--~~~~~~~A~~~giP~v~~ 144 (473)
++|+|++=.. .+.|..+|..+|+|++..
T Consensus 50 ~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~v 79 (189)
T PRK09219 50 GITKILTIEASGIAPAVMAALALGVPVVFA 79 (189)
T ss_pred CCCEEEEEccccHHHHHHHHHHHCCCEEEE
Confidence 7999985432 236788999999999887
No 414
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=28.06 E-value=1.4e+02 Score=29.59 Aligned_cols=70 Identities=17% Similarity=0.171 Sum_probs=46.1
Q ss_pred cceeeeccChhhHHHHHhc-----------------CCCEEecccccchhhhHHHHHHHHcceEEEec-ccCCccCHHHH
Q 043168 348 ISAFLSHCGWNSVLEALSH-----------------GVPIIGWPLAAEQFYNSKLLEEVIGVCVEVAR-GMNCEVSKENL 409 (473)
Q Consensus 348 ~~~~I~HgG~gs~~eal~~-----------------GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~-~~~~~~~~~~l 409 (473)
.++++|.||..+.+-|+.+ +.|+|.++-.. +.-+ .+..+.||+|++.-+ +++..++.+.+
T Consensus 104 ~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~a-H~S~-~Kaa~~lGlg~~~I~~~~~~~md~~~L 181 (373)
T PF00282_consen 104 AGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQA-HYSI-EKAARILGLGVRKIPTDEDGRMDIEAL 181 (373)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS--THH-HHHHHHTTSEEEEE-BBTTSSB-HHHH
T ss_pred CceeEeccchHHHHHHHHHHHHHHhhhhhhccccccccccccccccc-ccHH-HHhcceeeeEEEEecCCcchhhhHHHh
Confidence 3489999998888777533 24567765433 3334 445557799966544 45567889999
Q ss_pred HHHHHHHHcC
Q 043168 410 SAKFELVMNE 419 (473)
Q Consensus 410 ~~ai~~~l~~ 419 (473)
.++|.+..++
T Consensus 182 ~~~l~~~~~~ 191 (373)
T PF00282_consen 182 EKALEKDIAN 191 (373)
T ss_dssp HHHHHHHHHT
T ss_pred hhhhcccccc
Confidence 9999887655
No 415
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=28.05 E-value=93 Score=27.74 Aligned_cols=39 Identities=13% Similarity=0.114 Sum_probs=30.9
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCc
Q 043168 5 KENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPS 44 (473)
Q Consensus 5 ~~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~ 44 (473)
+.||.|-..|+-|-...+|.=|..|++ +|.+|++..-+.
T Consensus 5 rLkIflG~apGVGKTy~ML~ea~~l~~-~G~DVViG~vet 43 (211)
T PF02702_consen 5 RLKIFLGAAPGVGKTYAMLQEAHRLKE-QGVDVVIGYVET 43 (211)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHH-TT--EEEEE---
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHHH-CCCCEEEEEecC
Confidence 568999999999999999999999999 999998877443
No 416
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=27.96 E-value=2.2e+02 Score=26.82 Aligned_cols=28 Identities=21% Similarity=0.526 Sum_probs=20.7
Q ss_pred cceeeeccChhhHHHHHhc-----CCCEEe-ccc
Q 043168 348 ISAFLSHCGWNSVLEALSH-----GVPIIG-WPL 375 (473)
Q Consensus 348 ~~~~I~HgG~gs~~eal~~-----GvP~i~-~P~ 375 (473)
.+.+|.-||=||+.|++.. ..|.++ +|.
T Consensus 58 ~d~ivv~GGDGTl~~v~~~l~~~~~~~~lgiiP~ 91 (293)
T TIGR00147 58 VDTVIAGGGDGTINEVVNALIQLDDIPALGILPL 91 (293)
T ss_pred CCEEEEECCCChHHHHHHHHhcCCCCCcEEEEcC
Confidence 4479999999999997643 345554 886
No 417
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=27.89 E-value=4.9e+02 Score=27.57 Aligned_cols=62 Identities=13% Similarity=0.130 Sum_probs=34.3
Q ss_pred eeeeccChhhHHHHH--hcCCCEEeccc------ccc--hhhhHHHHHHHHcceEEEecccCCccCHHHHHHHHHHHHc
Q 043168 350 AFLSHCGWNSVLEAL--SHGVPIIGWPL------AAE--QFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAKFELVMN 418 (473)
Q Consensus 350 ~~I~HgG~gs~~eal--~~GvP~i~~P~------~~D--Q~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ai~~~l~ 418 (473)
.+++++|+|.+.... +++-+.....+ ..+ .++.++..+ .+|+ .-.+ --+.++|.+++++.+.
T Consensus 468 iV~NN~~yg~i~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~-a~G~--~~~~----V~~~~eL~~al~~a~~ 539 (588)
T TIGR01504 468 VLVNNAYLGLIRQAQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAE-GLGC--KAIR----VFKPEEIAPAFEQAKA 539 (588)
T ss_pred EEEeCCchHHHHHHHHHhcccccceeeccccccccccCCCCCHHHHHH-HCCC--EEEE----ECCHHHHHHHHHHHHh
Confidence 689999999775442 22221111100 011 356666555 3354 3221 3478999999999884
No 418
>PLN02727 NAD kinase
Probab=27.86 E-value=96 Score=34.28 Aligned_cols=53 Identities=13% Similarity=0.164 Sum_probs=38.7
Q ss_pred cceeeeccChhhHHHHHhc----CCCEEecccccchhhhHHHHHHHHcceEEEecccCCccCHHHHHHHHHHHHcCC
Q 043168 348 ISAFLSHCGWNSVLEALSH----GVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAKFELVMNET 420 (473)
Q Consensus 348 ~~~~I~HgG~gs~~eal~~----GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ai~~~l~~~ 420 (473)
++++|+=||=||++.|... ++|+|.+-.. .+|.- -.+..+++.++|.+++++.
T Consensus 744 ~DLVIvLGGDGTlLrAar~~~~~~iPILGINlG--------------rLGFL------Tdi~~ee~~~~L~~Il~G~ 800 (986)
T PLN02727 744 VDFVACLGGDGVILHASNLFRGAVPPVVSFNLG--------------SLGFL------TSHYFEDFRQDLRQVIHGN 800 (986)
T ss_pred CCEEEEECCcHHHHHHHHHhcCCCCCEEEEeCC--------------Ccccc------ccCCHHHHHHHHHHHHcCC
Confidence 5699999999999999664 6898888211 12222 2357788889999988766
No 419
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=27.64 E-value=3.5e+02 Score=28.56 Aligned_cols=120 Identities=10% Similarity=0.027 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCcEEEEEcCCCCCCCccchhcccCCchhHHHhhccCCCCeEEecccChHHhhccc--------ccceee
Q 043168 281 MQLAMALEACGKNFIWVVKPPLGFDLNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVEILSHK--------SISAFL 352 (473)
Q Consensus 281 ~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~lL~~~--------~~~~~I 352 (473)
..+++.|.+.|++.++-+.+. -...+.+.+.+...++.+..-......--.+ ..++++
T Consensus 3 ~~l~~~L~~~GV~~vFgvpG~--------------~~~~l~dal~~~~~~i~~v~~rhE~~A~~~Adgyar~tgk~gv~~ 68 (575)
T TIGR02720 3 AAVLKVLEAWGVDHIYGIPGG--------------SFNSTMDALSAERDRIHYIQVRHEEVGALAAAADAKLTGKIGVCF 68 (575)
T ss_pred HHHHHHHHHcCCCEEEECCCc--------------chHHHHHHHHhcCCCCcEEEeccHHHHHHHHHHHHHhhCCceEEE
Q ss_pred eccC------hhhHHHHHhcCCCEEeccc-------------ccchhhhHHHHHHHHcceEEEecccCCccCHHHHHHHH
Q 043168 353 SHCG------WNSVLEALSHGVPIIGWPL-------------AAEQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAKF 413 (473)
Q Consensus 353 ~HgG------~gs~~eal~~GvP~i~~P~-------------~~DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ai 413 (473)
+|.| .+.+++|...++|+|++.- ..||....+-+. ....++.. .+--.+.+.+|+
T Consensus 69 ~t~GPG~~n~~~~i~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~id~~~~~~~vt---k~~~~v~~---~~~~~~~i~~A~ 142 (575)
T TIGR02720 69 GSAGPGATHLLNGLYDAKEDHVPVLALVGQVPTTGMNMDTFQEMNENPIYADVA---VYNRTAMT---AESLPHVIDEAI 142 (575)
T ss_pred eCCCCcHHHHHHHHHHHhhcCCCEEEEecCCccccCCCCCcceechhhhhhhcc---eEEEEeCC---HHHHHHHHHHHH
Q ss_pred HHHHcCC
Q 043168 414 ELVMNET 420 (473)
Q Consensus 414 ~~~l~~~ 420 (473)
+..+..+
T Consensus 143 ~~A~~~~ 149 (575)
T TIGR02720 143 RRAYAHN 149 (575)
T ss_pred HHHhhCC
No 420
>PRK08266 hypothetical protein; Provisional
Probab=27.57 E-value=7.2e+02 Score=25.88 Aligned_cols=61 Identities=21% Similarity=0.201 Sum_probs=34.5
Q ss_pred eeeeccChhhHH--HHHhcCCCEEecccccchhhhHHHHHHHHcceEEEecccCCccCHHHHHHHHHHHHcC
Q 043168 350 AFLSHCGWNSVL--EALSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAKFELVMNE 419 (473)
Q Consensus 350 ~~I~HgG~gs~~--eal~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ai~~~l~~ 419 (473)
.+++++|+|.+. +-..++-......+ ..++.++.++ .+|+....- -+.+++.+++++.+..
T Consensus 452 vv~NN~~y~~~~~~~~~~~~~~~~~~~~--~~~d~~~la~-a~G~~~~~v------~~~~el~~al~~a~~~ 514 (542)
T PRK08266 452 VVFNNNAYGNVRRDQKRRFGGRVVASDL--VNPDFVKLAE-SFGVAAFRV------DSPEELRAALEAALAH 514 (542)
T ss_pred EEEeCCcchHHHHHHHHhcCCCcccCCC--CCCCHHHHHH-HcCCeEEEe------CCHHHHHHHHHHHHhC
Confidence 578999998763 22224333222221 2356666665 336643222 2678999999888753
No 421
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=27.53 E-value=1e+02 Score=32.17 Aligned_cols=39 Identities=21% Similarity=0.343 Sum_probs=28.2
Q ss_pred CceEEEEcC-------CCccCHHHHH---HHHHHHHhCCCcEEEEEcCCc
Q 043168 5 KENIVMFPL-------MAQGHIIPFL---ALALHLENTNRYTITFVNTPS 44 (473)
Q Consensus 5 ~~~Il~~~~-------~~~GHv~P~l---~LA~~L~~~rGh~Vt~~~~~~ 44 (473)
++++++.+. +=.||+.+.+ .+|+-++. +||+|.|+|..+
T Consensus 4 ~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl-~G~~v~fvtGtD 52 (558)
T COG0143 4 MKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRL-RGYEVFFLTGTD 52 (558)
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHh-cCCeEEEEeccC
Confidence 346666552 2469999777 45777888 999999999543
No 422
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=27.52 E-value=1.2e+02 Score=30.80 Aligned_cols=42 Identities=14% Similarity=0.197 Sum_probs=36.3
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchh
Q 043168 5 KENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLK 47 (473)
Q Consensus 5 ~~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~ 47 (473)
+..|+|+..++.|-..-+..||..|.. .|+.|.+++.+.+..
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~-~g~kV~lV~~D~~R~ 136 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKK-KGLKVGLVAADTYRP 136 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHH-cCCeEEEecCCCCCH
Confidence 345778888899999999999999999 999999999877654
No 423
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=27.50 E-value=5.1e+02 Score=25.33 Aligned_cols=36 Identities=11% Similarity=0.007 Sum_probs=28.0
Q ss_pred CceEEEEcCC--CccCHHHHHHHHHHHHhCCCcEEEEEc
Q 043168 5 KENIVMFPLM--AQGHIIPFLALALHLENTNRYTITFVN 41 (473)
Q Consensus 5 ~~~Il~~~~~--~~GHv~P~l~LA~~L~~~rGh~Vt~~~ 41 (473)
++||.+++.+ +-|==.-...+.+.+.. .|.+|.-+-
T Consensus 2 ~kkIaIlTSGGdaPGmNa~Iravvr~a~~-~g~eV~Gi~ 39 (347)
T COG0205 2 MKKIAILTSGGDAPGMNAVIRAVVRTAIK-EGLEVFGIY 39 (347)
T ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHH-cCCEEEEEe
Confidence 4699888876 44544567788899999 999998877
No 424
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=27.41 E-value=83 Score=29.75 Aligned_cols=39 Identities=21% Similarity=0.229 Sum_probs=29.0
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcC-Ccchhhhhh
Q 043168 7 NIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNT-PSNLKKLKS 51 (473)
Q Consensus 7 ~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~-~~~~~~v~~ 51 (473)
||+++..|..| ..+|..|.+ .||+|+++.. +...+.+..
T Consensus 2 ~I~IiG~G~~G-----~~~a~~L~~-~g~~V~~~~r~~~~~~~~~~ 41 (304)
T PRK06522 2 KIAILGAGAIG-----GLFGAALAQ-AGHDVTLVARRGAHLDALNE 41 (304)
T ss_pred EEEEECCCHHH-----HHHHHHHHh-CCCeEEEEECChHHHHHHHH
Confidence 78888887777 467888999 9999999986 333344443
No 425
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=27.36 E-value=95 Score=31.22 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=21.5
Q ss_pred CCeEEEeCCCcchHHHHHHHhCCcEEEE
Q 043168 117 KPVCIIADMFFAWSAEIAQEYGIFNALF 144 (473)
Q Consensus 117 ~pDlVI~D~~~~~~~~~A~~~giP~v~~ 144 (473)
+||++|... -+..+|+++|||++.+
T Consensus 350 ~pDl~Ig~s---~~~~~a~~~giP~~r~ 374 (416)
T cd01980 350 RPDLAIGTT---PLVQYAKEKGIPALYY 374 (416)
T ss_pred CCCEEEeCC---hhhHHHHHhCCCEEEe
Confidence 899999873 3677899999999987
No 426
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=27.32 E-value=99 Score=28.21 Aligned_cols=42 Identities=7% Similarity=-0.102 Sum_probs=33.5
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhh
Q 043168 7 NIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKL 49 (473)
Q Consensus 7 ~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v 49 (473)
-+++...|+.|-..=.+.++..-.. +|..+.|++.+...+.+
T Consensus 23 ~~lI~G~pGsGKT~la~~~l~~~~~-~ge~~lyvs~ee~~~~i 64 (237)
T TIGR03877 23 VVLLSGGPGTGKSIFSQQFLWNGLQ-MGEPGIYVALEEHPVQV 64 (237)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH-cCCcEEEEEeeCCHHHH
Confidence 4677778899999888888776668 89999999987755544
No 427
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=27.25 E-value=77 Score=33.25 Aligned_cols=72 Identities=19% Similarity=0.241 Sum_probs=40.0
Q ss_pred hHHHHHhcCCCEEeccccc-----chhhhHHHHHHHHcceEEEecccCCccCHHHHHHHHHHHHc-----CChhhHHHHH
Q 043168 359 SVLEALSHGVPIIGWPLAA-----EQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAKFELVMN-----ETEKGMDLRK 428 (473)
Q Consensus 359 s~~eal~~GvP~i~~P~~~-----DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ai~~~l~-----~~~~~~~~~~ 428 (473)
|=+||+++|||.|.-=+.+ .+... .. ... |+-+.-. ...+.++..+.+...|. +.+++..+|+
T Consensus 485 TPlE~~a~gVPsITTnLsGFG~~~~~~~~-~~-~~~-GV~VvdR----~~~n~~e~v~~la~~l~~f~~~~~rqri~~Rn 557 (633)
T PF05693_consen 485 TPLECTAFGVPSITTNLSGFGCWMQEHIE-DP-EEY-GVYVVDR----RDKNYDESVNQLADFLYKFCQLSRRQRIIQRN 557 (633)
T ss_dssp HHHHHHHTT--EEEETTBHHHHHHHTTS--HH-GGG-TEEEE-S----SSS-HHHHHHHHHHHHHHHHT--HHHHHHHHH
T ss_pred ChHHHhhcCCceeeccchhHHHHHHHhhc-cC-cCC-cEEEEeC----CCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 7899999999999876542 11111 11 123 5554444 34566666666665553 2324556888
Q ss_pred HHHHHHHHH
Q 043168 429 KASEVEMII 437 (473)
Q Consensus 429 ~a~~~~~~~ 437 (473)
+++++++.+
T Consensus 558 ~ae~LS~~~ 566 (633)
T PF05693_consen 558 RAERLSDLA 566 (633)
T ss_dssp HHHHHGGGG
T ss_pred HHHHHHHhC
Confidence 888887765
No 428
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=27.25 E-value=7.2e+02 Score=26.12 Aligned_cols=60 Identities=12% Similarity=-0.039 Sum_probs=35.1
Q ss_pred eeeeccChhhHHHH--HhcCCCEEecccccchhhhHHHHHHHHcce-EEEecccCCccCHHHHHHHHHHHHc
Q 043168 350 AFLSHCGWNSVLEA--LSHGVPIIGWPLAAEQFYNSKLLEEVIGVC-VEVARGMNCEVSKENLSAKFELVMN 418 (473)
Q Consensus 350 ~~I~HgG~gs~~ea--l~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G-~~l~~~~~~~~~~~~l~~ai~~~l~ 418 (473)
.+++++|+|.+... ..++-+.... .....++.++..+ .+|+- .+ --+.++|..++++.+.
T Consensus 471 vV~NN~~y~~i~~~q~~~~~~~~~~~-~~~~~~d~~~~A~-a~G~~~~~-------v~~~~eL~~al~~a~~ 533 (572)
T PRK08979 471 INLNNRFLGMVKQWQDMIYQGRHSHS-YMDSVPDFAKIAE-AYGHVGIR-------ISDPDELESGLEKALA 533 (572)
T ss_pred EEEeCCccHHHHHHHHHHhCCccccc-CCCCCCCHHHHHH-HCCCeEEE-------ECCHHHHHHHHHHHHh
Confidence 68999999987532 3333332111 1112356666555 33653 22 2378899999998885
No 429
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=27.17 E-value=3.7e+02 Score=26.47 Aligned_cols=35 Identities=29% Similarity=0.459 Sum_probs=25.5
Q ss_pred eEEEEecCcccCCHHHHHHHHHHHHhCCCcEEEEEcC
Q 043168 264 VIYVSFGSQNTIAASQMMQLAMALEACGKNFIWVVKP 300 (473)
Q Consensus 264 ~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~ 300 (473)
++++++|+.+ .-.-+..+.++|.+.|++|.+.+..
T Consensus 3 Il~~~~p~~G--Hv~P~l~la~~L~~rGh~V~~~t~~ 37 (401)
T cd03784 3 VLITTIGSRG--DVQPLVALAWALRAAGHEVRVATPP 37 (401)
T ss_pred EEEEeCCCcc--hHHHHHHHHHHHHHCCCeEEEeeCH
Confidence 6788888765 3344557778888888888887764
No 430
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=27.17 E-value=1.3e+02 Score=27.56 Aligned_cols=41 Identities=15% Similarity=0.113 Sum_probs=36.4
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchh
Q 043168 6 ENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLK 47 (473)
Q Consensus 6 ~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~ 47 (473)
++|.++.-++.|--+-.-.++.+|+. .|++|..+..++-.+
T Consensus 2 r~iAiYGKGGIGKSTts~N~aAAla~-~GkkVl~vGCDPKaD 42 (278)
T COG1348 2 RQIAIYGKGGIGKSTTSQNLAAALAE-LGKKVLIVGCDPKAD 42 (278)
T ss_pred ceEEEecCCCcCcchhHHHHHHHHHH-cCCeEEEEcCCCCcc
Confidence 48999999999999999999999999 999999998665443
No 431
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=27.16 E-value=96 Score=28.82 Aligned_cols=36 Identities=8% Similarity=0.078 Sum_probs=32.0
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCC
Q 043168 7 NIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTP 43 (473)
Q Consensus 7 ~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~ 43 (473)
.|.+..=|+-|..+-...||..|++ +|++|.++=..
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~la~-~G~rvlliD~D 37 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVALAK-RGKKVLQIGCD 37 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHH-CCCcEEEEecC
Confidence 5778878999999999999999999 99999988644
No 432
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=27.16 E-value=7.2e+02 Score=26.11 Aligned_cols=60 Identities=10% Similarity=0.047 Sum_probs=34.3
Q ss_pred eeeeccChhhHHHHH-hcCCCEEecccccchhhhHHHHHHHHcceEEEecccCCccCHHHHHHHHHHHHc
Q 043168 350 AFLSHCGWNSVLEAL-SHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAKFELVMN 418 (473)
Q Consensus 350 ~~I~HgG~gs~~eal-~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ai~~~l~ 418 (473)
.+++++|+|.+..-. ..+..... ....+++.++..+.. |+- -. .--+.++|.+++++.+.
T Consensus 458 vV~NN~~~g~i~~~~~~~~~~~~~--~~~~~~d~~~lA~a~-G~~--~~----~v~~~~eL~~al~~a~~ 518 (574)
T PRK09124 458 VVFNNSVLGFVAMEMKAGGYLTDG--TDLHNPDFAAIAEAC-GIT--GI----RVEKASELDGALQRAFA 518 (574)
T ss_pred EEEeCCccccHHHHHHhcCCcccc--CcCCCCCHHHHHHHC-CCe--EE----EeCCHHHHHHHHHHHHh
Confidence 689999999873222 11211000 112356777666633 553 22 12478999999998875
No 433
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=27.12 E-value=15 Score=33.22 Aligned_cols=44 Identities=11% Similarity=0.061 Sum_probs=32.1
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCC-CcEEEEEcCCcchhhhhh
Q 043168 7 NIVMFPLMAQGHIIPFLALALHLENTN-RYTITFVNTPSNLKKLKS 51 (473)
Q Consensus 7 ~Il~~~~~~~GHv~P~l~LA~~L~~~r-Gh~Vt~~~~~~~~~~v~~ 51 (473)
-+++...|+.|-..=.++++..-.+ + |..|.|++.+...+.+.+
T Consensus 21 ~~li~G~~GsGKT~l~~q~l~~~~~-~~ge~vlyvs~ee~~~~l~~ 65 (226)
T PF06745_consen 21 VVLISGPPGSGKTTLALQFLYNGLK-NFGEKVLYVSFEEPPEELIE 65 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH-HHT--EEEEESSS-HHHHHH
T ss_pred EEEEEeCCCCCcHHHHHHHHHHhhh-hcCCcEEEEEecCCHHHHHH
Confidence 4677778899999888998866666 6 999999998776655544
No 434
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.06 E-value=1.7e+02 Score=24.86 Aligned_cols=47 Identities=15% Similarity=0.138 Sum_probs=31.2
Q ss_pred HHHHHHhhhhh--ccCCCCCeEEEeCCCcc----------hHHHHHHHhCCcEEEEccccH
Q 043168 101 HFRKLINGLID--EQNGHKPVCIIADMFFA----------WSAEIAQEYGIFNALFVGGGS 149 (473)
Q Consensus 101 ~l~~~l~~~~~--~~~~~~pDlVI~D~~~~----------~~~~~A~~~giP~v~~~~~~~ 149 (473)
.+++|+..+.. +|+ .||+|++..-.- -+..+|+++|+|++-.+.+..
T Consensus 108 nvrnWlSQL~~hAYcE--~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg 166 (219)
T KOG0081|consen 108 NVRNWLSQLQTHAYCE--NPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTG 166 (219)
T ss_pred HHHHHHHHHHHhhccC--CCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccC
Confidence 45677765422 222 699999865432 245789999999998765544
No 435
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=26.88 E-value=1e+02 Score=28.67 Aligned_cols=36 Identities=6% Similarity=0.021 Sum_probs=31.6
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCC
Q 043168 7 NIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTP 43 (473)
Q Consensus 7 ~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~ 43 (473)
+|.++.-|+-|-.+-...||..|++ +|++|.++=-+
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~~La~-~g~rVLliD~D 37 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSVAFAK-LGKRVLQIGCD 37 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHHHHHh-CCCeEEEEecC
Confidence 5777877899999999999999999 99999988543
No 436
>PLN02293 adenine phosphoribosyltransferase
Probab=26.83 E-value=1.8e+02 Score=25.55 Aligned_cols=42 Identities=10% Similarity=-0.091 Sum_probs=28.2
Q ss_pred hhhhHHHHHHHhhhhhccCCCCCeEEEeCC-Cc-chHHHHHHHhCCcEEEE
Q 043168 96 LSFKPHFRKLINGLIDEQNGHKPVCIIADM-FF-AWSAEIAQEYGIFNALF 144 (473)
Q Consensus 96 ~~~~~~l~~~l~~~~~~~~~~~pDlVI~D~-~~-~~~~~~A~~~giP~v~~ 144 (473)
....+.+.+.++.. ++|+|++=. .. ..|..+|..+|+|++..
T Consensus 48 ~~~~~~l~~~~~~~-------~~d~Ivg~e~~Gi~lA~~lA~~Lg~p~v~~ 91 (187)
T PLN02293 48 KDTIDLFVERYRDM-------GISVVAGIEARGFIFGPPIALAIGAKFVPL 91 (187)
T ss_pred HHHHHHHHHHHhhc-------CCCEEEEeCCCchHHHHHHHHHHCCCEEEE
Confidence 34444555555555 789888533 22 36788999999998865
No 437
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=26.77 E-value=1.2e+02 Score=25.69 Aligned_cols=33 Identities=15% Similarity=0.071 Sum_probs=25.7
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCC
Q 043168 5 KENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTP 43 (473)
Q Consensus 5 ~~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~ 43 (473)
.++|+++..|.-| ...++.|.. .||+|+++.+.
T Consensus 13 ~~~vlVvGGG~va-----~rka~~Ll~-~ga~V~VIsp~ 45 (157)
T PRK06719 13 NKVVVIIGGGKIA-----YRKASGLKD-TGAFVTVVSPE 45 (157)
T ss_pred CCEEEEECCCHHH-----HHHHHHHHh-CCCEEEEEcCc
Confidence 4578888766444 678999999 99999999643
No 438
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=26.76 E-value=2.8e+02 Score=28.99 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=22.0
Q ss_pred cceeeeccChh------hHHHHHhcCCCEEecc
Q 043168 348 ISAFLSHCGWN------SVLEALSHGVPIIGWP 374 (473)
Q Consensus 348 ~~~~I~HgG~g------s~~eal~~GvP~i~~P 374 (473)
..++++|.|-| .+.+|.+.++|+|++-
T Consensus 65 pgv~~~t~GPG~~N~l~~l~~A~~~~~Pvl~i~ 97 (549)
T PRK06457 65 PSACMGTSGPGSIHLLNGLYDAKMDHAPVIALT 97 (549)
T ss_pred CeEEEeCCCCchhhhHHHHHHHHhcCCCEEEEe
Confidence 44688888855 6789999999999983
No 439
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=26.69 E-value=2.8e+02 Score=27.76 Aligned_cols=33 Identities=18% Similarity=0.206 Sum_probs=25.1
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCc
Q 043168 6 ENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPS 44 (473)
Q Consensus 6 ~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~ 44 (473)
+||+++..+..+| .|+++++. -|+.+++++.+.
T Consensus 1 ~kiliiG~G~~~~-----~l~~~~~~-~~~~~~~~~~~~ 33 (423)
T TIGR00877 1 MKVLVIGNGGREH-----ALAWKLAQ-SPLVKYVYVAPG 33 (423)
T ss_pred CEEEEECCChHHH-----HHHHHHHh-CCCccEEEEECC
Confidence 3788988887755 68889988 888777776544
No 440
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=26.66 E-value=1.2e+02 Score=27.58 Aligned_cols=34 Identities=15% Similarity=0.081 Sum_probs=29.0
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCcE-EEEEc
Q 043168 7 NIVMFPLMAQGHIIPFLALALHLENTNRYT-ITFVN 41 (473)
Q Consensus 7 ~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~-Vt~~~ 41 (473)
=|+|...|..|--.....|.++|++ +||. ++.+.
T Consensus 3 LVvi~G~P~SGKstrA~~L~~~l~~-~~~K~~v~ii 37 (281)
T KOG3062|consen 3 LVVICGLPCSGKSTRAVELREALKE-RGTKQSVRII 37 (281)
T ss_pred eEEEeCCCCCCchhHHHHHHHHHHh-hcccceEEEe
Confidence 5788889999999999999999999 9985 44443
No 441
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=26.66 E-value=4.4e+02 Score=23.11 Aligned_cols=60 Identities=13% Similarity=0.110 Sum_probs=34.0
Q ss_pred eeeeccChhhHHHH--HhcCCCEEecccccchhhhHHHHHHHHcceEEEecccCCccCHHHHHHHHHHHHc
Q 043168 350 AFLSHCGWNSVLEA--LSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAKFELVMN 418 (473)
Q Consensus 350 ~~I~HgG~gs~~ea--l~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ai~~~l~ 418 (473)
.+++++|+|.+... ..++.......+ +-++.++..+ .+|+--.. --+.++|.+++++.+.
T Consensus 103 vV~NN~~yg~~~~~q~~~~~~~~~~~~~--~~~d~~~lA~-a~G~~~~~------v~~~~el~~al~~a~~ 164 (196)
T cd02013 103 VVFRNRQWGAEKKNQVDFYNNRFVGTEL--ESESFAKIAE-ACGAKGIT------VDKPEDVGPALQKAIA 164 (196)
T ss_pred EEEECchhHHHHHHHHHHcCCCcccccC--CCCCHHHHHH-HCCCEEEE------ECCHHHHHHHHHHHHh
Confidence 57799999987632 223332222211 1255665555 43653222 2368889999988875
No 442
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=26.50 E-value=7.7e+02 Score=25.86 Aligned_cols=62 Identities=11% Similarity=0.136 Sum_probs=35.6
Q ss_pred eeeeccChhhHHHH--HhcCCCEEecccccchhhhHHHHHHHHcceEEEecccCCccCHHHHHHHHHHHHcC
Q 043168 350 AFLSHCGWNSVLEA--LSHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAKFELVMNE 419 (473)
Q Consensus 350 ~~I~HgG~gs~~ea--l~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ai~~~l~~ 419 (473)
.+++++|+|.+..- ..++.+....-+ ...++.++..+ +.|..-.. --+.+++.+++.+.+..
T Consensus 469 vV~NN~~~g~~~~~q~~~~~~~~~~~~~-~~~~d~~~~a~---a~G~~~~~----v~~~~el~~al~~a~~~ 532 (564)
T PRK08155 469 ILMNNEALGLVHQQQSLFYGQRVFAATY-PGKINFMQIAA---GFGLETCD----LNNEADPQAALQEAINR 532 (564)
T ss_pred EEEeCCcccccHHHHHHhcCCCeeeccC-CCCCCHHHHHH---HCCCeEEE----eCCHHHHHHHHHHHHhC
Confidence 68999999976532 334544433211 12345666555 33433221 23678899999888753
No 443
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=26.44 E-value=4.1e+02 Score=27.69 Aligned_cols=118 Identities=14% Similarity=0.097 Sum_probs=62.0
Q ss_pred ccCHHHHHHHH-HHHHhCCCcEEEEEcCCcchhhhhhcCCCCCCceEEeccCCCCCCCCCC-----CC-CCCCCCCC---
Q 043168 16 QGHIIPFLALA-LHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPP-----CT-ENSDSLPF--- 85 (473)
Q Consensus 16 ~GHv~P~l~LA-~~L~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~ip~~~~~~~l~~-----~~-~~~~~~~~--- 85 (473)
.|++.=.+.+| +.+.+ .|++|.+.-+. ....+.+. ..+.++.|+....+ -+.. .. ....-..+
T Consensus 36 ~~~~~~~~~~a~~~~~~-~~~dviIsrG~-ta~~i~~~----~~iPVv~i~~s~~D-il~al~~a~~~~~~ia~vg~~~~ 108 (526)
T TIGR02329 36 QLGFEDAVREIRQRLGA-ERCDVVVAGGS-NGAYLKSR----LSLPVIVIKPTGFD-VMQALARARRIASSIGVVTHQDT 108 (526)
T ss_pred eccHHHHHHHHHHHHHh-CCCcEEEECch-HHHHHHHh----CCCCEEEecCChhh-HHHHHHHHHhcCCcEEEEecCcc
Confidence 36677777888 44667 78988887744 55555542 23456655543111 1100 00 00000001
Q ss_pred -CCchHHHHHHh--------hhhHHHHHHHhhhhhccCCCCCeEEEeCCCcchHHHHHHHhCCcEEEEccc
Q 043168 86 -HLFPNFFESTL--------SFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALFVGG 147 (473)
Q Consensus 86 -~~~~~~~~~~~--------~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~~~~ 147 (473)
.....+...+. ...++....++..... +.++||+|. .+..+|+++|++.|.+.+.
T Consensus 109 ~~~~~~~~~ll~~~i~~~~~~~~~e~~~~~~~l~~~----G~~~viG~~---~~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 109 PPALRRFQAAFNLDIVQRSYVTEEDARSCVNDLRAR----GIGAVVGAG---LITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred cHHHHHHHHHhCCceEEEEecCHHHHHHHHHHHHHC----CCCEEECCh---HHHHHHHHcCCceEEEecH
Confidence 11122222220 1123344444444322 799999997 2467899999999998653
No 444
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=26.40 E-value=1.1e+02 Score=30.89 Aligned_cols=26 Identities=35% Similarity=0.423 Sum_probs=21.2
Q ss_pred cceeeeccChh------hHHHHHhcCCCEEec
Q 043168 348 ISAFLSHCGWN------SVLEALSHGVPIIGW 373 (473)
Q Consensus 348 ~~~~I~HgG~g------s~~eal~~GvP~i~~ 373 (473)
.+++++|.|-| .+.+|.+.++|+|++
T Consensus 64 ~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i 95 (432)
T TIGR00173 64 PVAVVCTSGTAVANLLPAVIEASYSGVPLIVL 95 (432)
T ss_pred CEEEEECCcchHhhhhHHHHHhcccCCcEEEE
Confidence 44678887755 677999999999998
No 445
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=26.37 E-value=3e+02 Score=29.00 Aligned_cols=117 Identities=15% Similarity=0.025 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCcEEEEEcCCCCCCCccchhcccCCchhHHHhhccCCCCeEEecccChHHhhccc---------cccee
Q 043168 281 MQLAMALEACGKNFIWVVKPPLGFDLNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVEILSHK---------SISAF 351 (473)
Q Consensus 281 ~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~lL~~~---------~~~~~ 351 (473)
+.+++.|++.|++.++-+.+. -...+.+.+. ..++.. =...+.....++ ...++
T Consensus 6 ~~l~~~L~~~GV~~vFGipG~--------------~~~~l~dal~--~~~i~~-i~~rhE~~A~~~Adgyar~tg~~gv~ 68 (579)
T TIGR03457 6 EAFVEVLVANGVTHAFGIMGS--------------AFMDAMDLFP--PAGIRF-IPVVHEQGAGHMADGFARVTGRMSMV 68 (579)
T ss_pred HHHHHHHHHCCCCEEEEccCc--------------chHHHHHHHh--hcCCeE-EEeccHHHHHHHHHHHHHHhCCCEEE
Q ss_pred eeccChh------hHHHHHhcCCCEEec-------------ccccchhhhHHHHHHHHcceEEEecccCCccCHHHHHHH
Q 043168 352 LSHCGWN------SVLEALSHGVPIIGW-------------PLAAEQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAK 412 (473)
Q Consensus 352 I~HgG~g------s~~eal~~GvP~i~~-------------P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~a 412 (473)
++|.|-| .+++|...++|+|++ -+..||....+-+. .....+.. ..-.++.+.+|
T Consensus 69 ~~t~GPG~~N~~~gla~A~~~~~Pvl~I~g~~~~~~~~~~~~Q~~d~~~l~~~vt---k~~~~v~~---~~~~~~~i~~A 142 (579)
T TIGR03457 69 IGQNGPGVTNCVTAIAAAYWAHTPVVIVTPEAGTKTIGLGGFQEADQLPMFQEFT---KYQGHVRH---PSRMAEVLNRC 142 (579)
T ss_pred EECCCchHHHHHHHHHHHhhcCCCEEEEeCCCccccCCCCCCcccchhhhhhcce---eEEEecCC---HHHHHHHHHHH
Q ss_pred HHHHHcCC
Q 043168 413 FELVMNET 420 (473)
Q Consensus 413 i~~~l~~~ 420 (473)
++..+...
T Consensus 143 ~~~A~~~~ 150 (579)
T TIGR03457 143 FERAWREM 150 (579)
T ss_pred HHHHhcCC
No 446
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=26.26 E-value=2.7e+02 Score=29.27 Aligned_cols=27 Identities=19% Similarity=0.418 Sum_probs=22.2
Q ss_pred cceeeeccChh------hHHHHHhcCCCEEecc
Q 043168 348 ISAFLSHCGWN------SVLEALSHGVPIIGWP 374 (473)
Q Consensus 348 ~~~~I~HgG~g------s~~eal~~GvP~i~~P 374 (473)
..++++|.|-| .+.+|.+.++|+|++-
T Consensus 74 ~gv~~~t~GPG~~n~~~gla~A~~~~~Pvl~i~ 106 (566)
T PRK07282 74 LGVAVVTSGPGATNAITGIADAMSDSVPLLVFT 106 (566)
T ss_pred CeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 45788888855 5779999999999985
No 447
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=26.05 E-value=6e+02 Score=24.48 Aligned_cols=45 Identities=20% Similarity=0.324 Sum_probs=31.4
Q ss_pred ceEEEEcCCCcc-----CHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhh
Q 043168 6 ENIVMFPLMAQG-----HIIPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (473)
Q Consensus 6 ~~Il~~~~~~~G-----Hv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~~ 51 (473)
+.|+|.|..+.| -..-+..|++.|.+ +|++|.++.++...+..+.
T Consensus 176 ~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~-~~~~Vvl~g~~~e~e~~~~ 225 (334)
T COG0859 176 PYIVINPGASRGSAKRWPLEHYAELAELLIA-KGYQVVLFGGPDEEERAEE 225 (334)
T ss_pred CeEEEeccccccccCCCCHHHHHHHHHHHHH-CCCEEEEecChHHHHHHHH
Confidence 467777762332 23357899999999 9999999998855555443
No 448
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=26.02 E-value=1.4e+02 Score=30.02 Aligned_cols=41 Identities=10% Similarity=0.065 Sum_probs=33.2
Q ss_pred eEEEEcCCCccCHHHHHHHHHHH-HhCCCcEEEEEcCCcchhh
Q 043168 7 NIVMFPLMAQGHIIPFLALALHL-ENTNRYTITFVNTPSNLKK 48 (473)
Q Consensus 7 ~Il~~~~~~~GHv~P~l~LA~~L-~~~rGh~Vt~~~~~~~~~~ 48 (473)
-|+|+..++.|-.+=+..||..+ .. +|+.|.+++.+.+...
T Consensus 225 vi~lvGptGvGKTTtaaKLA~~~~~~-~G~~V~Lit~Dt~R~a 266 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFLH-MGKSVSLYTTDNYRIA 266 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHh-cCCeEEEecccchhhh
Confidence 35677777999999999999866 67 8999999998875543
No 449
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=25.89 E-value=7.8e+02 Score=25.77 Aligned_cols=61 Identities=15% Similarity=-0.043 Sum_probs=35.2
Q ss_pred eeeeccChhhHHHH--HhcCCCEEeccccc-chhhhHHHHHHHHcceEEEecccCCccCHHHHHHHHHHHHcC
Q 043168 350 AFLSHCGWNSVLEA--LSHGVPIIGWPLAA-EQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAKFELVMNE 419 (473)
Q Consensus 350 ~~I~HgG~gs~~ea--l~~GvP~i~~P~~~-DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ai~~~l~~ 419 (473)
.++++||+|.+... ..++-+.... .. ..++.++..+ .+|+- -. .--+.++|.+++.+.+..
T Consensus 464 vV~NN~~y~~i~~~~~~~~~~~~~~~--~~~~~~d~~~lA~-a~G~~--~~----~v~t~~el~~al~~a~~~ 527 (561)
T PRK06048 464 AILNNGYLGMVRQWQELFYDKRYSHT--CIKGSVDFVKLAE-AYGAL--GL----RVEKPSEVRPAIEEAVAS 527 (561)
T ss_pred EEEECCccHHHHHHHHHHcCCccccc--CCCCCCCHHHHHH-HCCCe--EE----EECCHHHHHHHHHHHHhC
Confidence 68999999977532 2233332111 11 2356666555 33543 22 134789999999998853
No 450
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=25.87 E-value=1.6e+02 Score=23.41 Aligned_cols=42 Identities=7% Similarity=0.117 Sum_probs=34.1
Q ss_pred EEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhh
Q 043168 9 VMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (473)
Q Consensus 9 l~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~~ 51 (473)
+++.+...|+....+.+++.+++ +|..|+.+|.....+..+.
T Consensus 56 ~vi~is~sg~~~~~~~~~~~ak~-~g~~vi~iT~~~~~~l~~~ 97 (131)
T PF01380_consen 56 LVIIISYSGETRELIELLRFAKE-RGAPVILITSNSESPLARL 97 (131)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHH-TTSEEEEEESSTTSHHHHH
T ss_pred eeEeeeccccchhhhhhhHHHHh-cCCeEEEEeCCCCCchhhh
Confidence 34444477888999999999999 9999999998777777666
No 451
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=25.83 E-value=6.9e+02 Score=26.59 Aligned_cols=63 Identities=17% Similarity=0.008 Sum_probs=35.0
Q ss_pred eeeeccChhhHHH--HHhcCCCEEeccc--ccc-hhhhHHHHHHHHcceEEEecccCCccCHHHHHHHHHHHHcC
Q 043168 350 AFLSHCGWNSVLE--ALSHGVPIIGWPL--AAE-QFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAKFELVMNE 419 (473)
Q Consensus 350 ~~I~HgG~gs~~e--al~~GvP~i~~P~--~~D-Q~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ai~~~l~~ 419 (473)
.+++++|+|.+.. -+.++-+....-+ ..+ .++.+...+ .+|+--.- --+.++|.+++++.+++
T Consensus 497 vV~NN~~~g~i~~~q~~~~~~~~~~~~~~~~~~~~~d~~~lA~-a~G~~~~~------V~~~~eL~~al~~a~~~ 564 (612)
T PRK07789 497 ALINNGNLGMVRQWQTLFYEERYSNTDLHTHSHRIPDFVKLAE-AYGCVGLR------CEREEDVDAVIEKARAI 564 (612)
T ss_pred EEEECCchHHHHHHHHHhhCCCcceeecCcCCCCCCCHHHHHH-HCCCeEEE------ECCHHHHHHHHHHHHhc
Confidence 6899999997653 2333332211111 111 245666555 33543221 23788999999998863
No 452
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=25.80 E-value=7.1e+02 Score=26.17 Aligned_cols=121 Identities=12% Similarity=-0.015 Sum_probs=59.4
Q ss_pred eEEEEecCcccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCccchhcccCCchhHHHhhccCCCCeEEecccChHHhh
Q 043168 264 VIYVSFGSQNTIAASQMMQLAMALEACGKNFIWVVKPPLGFDLNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVEIL 343 (473)
Q Consensus 264 ~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~lL 343 (473)
.-|++-|..+.+....=..+-.++...+.++|.++|.+. +.- -..++.-..+ ..-++
T Consensus 414 ~~~~~~~~~gsmG~glpaAiGa~la~p~r~Vv~i~GDG~-------f~m---~~~eL~Ta~r-~~lpv------------ 470 (574)
T PRK06466 414 NRWINSGGLGTMGFGLPAAMGVKLAFPDQDVACVTGEGS-------IQM---NIQELSTCLQ-YGLPV------------ 470 (574)
T ss_pred CcEEcCCCcchhhchHHHHHHHHHhCCCCeEEEEEcchh-------hhc---cHHHHHHHHH-hCCCe------------
Confidence 455544443333333334455566667888988888662 100 1111111110 01122
Q ss_pred cccccceeeeccChhhHHHHH--hcCCCEEecccccchhhhHHHHHHHHcceEEEecccCCccCHHHHHHHHHHHHcC
Q 043168 344 SHKSISAFLSHCGWNSVLEAL--SHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAKFELVMNE 419 (473)
Q Consensus 344 ~~~~~~~~I~HgG~gs~~eal--~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ai~~~l~~ 419 (473)
+-.+++++|+|.+.... .++-+.-.. ....=++.++..+ .+|+- -. .--+.++|.+++++.++.
T Consensus 471 ----~ivV~NN~~y~~i~~~q~~~~~~~~~~~-~~~~~~d~~~lA~-a~G~~--~~----~v~~~~el~~al~~a~~~ 536 (574)
T PRK06466 471 ----KIINLNNGALGMVRQWQDMQYEGRHSHS-YMESLPDFVKLAE-AYGHV--GI----RITDLKDLKPKLEEAFAM 536 (574)
T ss_pred ----EEEEEeCCccHHHHHHHHHhcCCceeec-CCCCCCCHHHHHH-HCCCe--EE----EECCHHHHHHHHHHHHhc
Confidence 22689999999875432 222221111 0001145665555 33543 22 123788999999888753
No 453
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=25.77 E-value=81 Score=31.06 Aligned_cols=37 Identities=22% Similarity=0.120 Sum_probs=26.3
Q ss_pred CCCCCceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcC
Q 043168 1 MAQRKENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNT 42 (473)
Q Consensus 1 m~~~~~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~ 42 (473)
|...+++|++.. +.|.+ -..|++.|.+ +||+|+.+.-
T Consensus 17 ~~~~~~~IlVtG--gtGfI--G~~l~~~L~~-~G~~V~~v~r 53 (370)
T PLN02695 17 WPSEKLRICITG--AGGFI--ASHIARRLKA-EGHYIIASDW 53 (370)
T ss_pred CCCCCCEEEEEC--CccHH--HHHHHHHHHh-CCCEEEEEEe
Confidence 445667887763 33432 3478999999 9999998873
No 454
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=25.77 E-value=1.4e+02 Score=28.11 Aligned_cols=38 Identities=13% Similarity=0.152 Sum_probs=33.2
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcc
Q 043168 7 NIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSN 45 (473)
Q Consensus 7 ~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~ 45 (473)
-|+|+..++.|-..-...||..|.. .|++|.+++.+.+
T Consensus 74 vi~l~G~~G~GKTTt~akLA~~l~~-~g~~V~li~~D~~ 111 (272)
T TIGR00064 74 VILFVGVNGVGKTTTIAKLANKLKK-QGKSVLLAAGDTF 111 (272)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHh-cCCEEEEEeCCCC
Confidence 4577777799999999999999999 9999999997754
No 455
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=25.75 E-value=6.8e+02 Score=28.88 Aligned_cols=39 Identities=18% Similarity=0.242 Sum_probs=29.7
Q ss_pred CceEEEEcCCC--ccCHH----HHHHHHHHHHhCCCcEEEEEcCCc
Q 043168 5 KENIVMFPLMA--QGHII----PFLALALHLENTNRYTITFVNTPS 44 (473)
Q Consensus 5 ~~~Il~~~~~~--~GHv~----P~l~LA~~L~~~rGh~Vt~~~~~~ 44 (473)
.+|||++..|. .|+.. ....++++|++ .||+|+.+.+..
T Consensus 7 ~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e-~G~~vi~v~~np 51 (1068)
T PRK12815 7 IQKILVIGSGPIVIGQAAEFDYSGTQACLALKE-EGYQVVLVNPNP 51 (1068)
T ss_pred CCEEEEECCCcchhcchhhhhhHHHHHHHHHHH-cCCEEEEEeCCc
Confidence 35899988774 35432 56788999999 999999998553
No 456
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=25.73 E-value=36 Score=32.03 Aligned_cols=39 Identities=28% Similarity=0.569 Sum_probs=32.1
Q ss_pred ccChhhHH--HHHhcCCCEEecccccchhhhHHH-HHHHHcce
Q 043168 354 HCGWNSVL--EALSHGVPIIGWPLAAEQFYNSKL-LEEVIGVC 393 (473)
Q Consensus 354 HgG~gs~~--eal~~GvP~i~~P~~~DQ~~~a~~-v~~~lG~G 393 (473)
-||||+++ -|-.+||=++++-+...|..+++. +.++ |+-
T Consensus 80 GCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~-gl~ 121 (283)
T COG2230 80 GCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAAR-GLE 121 (283)
T ss_pred CCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHc-CCC
Confidence 47888765 566779999999999999999977 5545 888
No 457
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=25.70 E-value=1e+02 Score=27.78 Aligned_cols=38 Identities=32% Similarity=0.350 Sum_probs=26.7
Q ss_pred HHHhhhhhccCCCCCeEEEeCCCc--chHHHHHHHhCCcEEEEcccc
Q 043168 104 KLINGLIDEQNGHKPVCIIADMFF--AWSAEIAQEYGIFNALFVGGG 148 (473)
Q Consensus 104 ~~l~~~~~~~~~~~pDlVI~D~~~--~~~~~~A~~~giP~v~~~~~~ 148 (473)
+.+... +||+||..... .....-....++|++.+....
T Consensus 54 E~i~~l-------~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~ 93 (238)
T PF01497_consen 54 EAILAL-------KPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSS 93 (238)
T ss_dssp HHHHHT---------SEEEEETTSSCHHHHHHHHHTTSEEEEESSTT
T ss_pred HHHHhC-------CCCEEEEeccccchHHHHHHhcccceEEEeeccc
Confidence 455677 89999988766 345566777899999986654
No 458
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=25.65 E-value=99 Score=31.63 Aligned_cols=45 Identities=11% Similarity=0.039 Sum_probs=36.4
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhh
Q 043168 5 KENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (473)
Q Consensus 5 ~~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~~ 51 (473)
.+||++...++.+= .-...|.+.|++ +|++|.++.++...+.+..
T Consensus 70 ~k~IllgVtGsIAa-yka~~lvr~L~k-~G~~V~VvmT~sA~~fv~p 114 (475)
T PRK13982 70 SKRVTLIIGGGIAA-YKALDLIRRLKE-RGAHVRCVLTKAAQQFVTP 114 (475)
T ss_pred CCEEEEEEccHHHH-HHHHHHHHHHHh-CcCEEEEEECcCHHHHhhH
Confidence 45888777665553 478899999999 9999999999988877765
No 459
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=25.58 E-value=1.1e+02 Score=30.93 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=21.4
Q ss_pred CCeEEEeCCCcchHHHHHHHhCCcEEEE
Q 043168 117 KPVCIIADMFFAWSAEIAQEYGIFNALF 144 (473)
Q Consensus 117 ~pDlVI~D~~~~~~~~~A~~~giP~v~~ 144 (473)
+||++|.... ...+|+++|||++.+
T Consensus 377 ~pDliiG~s~---~~~~a~~~gip~v~~ 401 (435)
T cd01974 377 PVDLLIGNTY---GKYIARDTDIPLVRF 401 (435)
T ss_pred CCCEEEECcc---HHHHHHHhCCCEEEe
Confidence 8999998863 578899999999877
No 460
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=25.56 E-value=3.9e+02 Score=23.72 Aligned_cols=104 Identities=11% Similarity=0.111 Sum_probs=53.2
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhC-CCcEEEEEcCCc-chhhhhhcCCCCCCceEEeccCCCCCCCCCCCCCCCCCC
Q 043168 6 ENIVMFPLMAQGHIIPFLALALHLENT-NRYTITFVNTPS-NLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSL 83 (473)
Q Consensus 6 ~~Il~~~~~~~GHv~P~l~LA~~L~~~-rGh~Vt~~~~~~-~~~~v~~~~~~~~~~~~~~ip~~~~~~~l~~~~~~~~~~ 83 (473)
+||+++.++..+.+. +|+++.... -..+|..+.... ...-++..-. .++....+... ..+
T Consensus 1 ~ki~VlaSG~GSNlq---aiida~~~~~~~a~i~~Visd~~~A~~lerA~~--~gIpt~~~~~k----~~~--------- 62 (200)
T COG0299 1 KKIAVLASGNGSNLQ---AIIDAIKGGKLDAEIVAVISDKADAYALERAAK--AGIPTVVLDRK----EFP--------- 62 (200)
T ss_pred CeEEEEEeCCcccHH---HHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHH--cCCCEEEeccc----cCC---------
Confidence 378888888887755 455555441 124555554333 4333333211 33333322200 111
Q ss_pred CCCCchHHHHHHhhhhHHHHHHHhhhhhccCCCCCeEEEeCCCcc-hHHHHHHHhCCcEEEE
Q 043168 84 PFHLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFA-WSAEIAQEYGIFNALF 144 (473)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~~-~~~~~A~~~giP~v~~ 144 (473)
.-..+...+.+.++.. +||+|+.-.++- .+..+-..+.=..+-+
T Consensus 63 ----------~r~~~d~~l~~~l~~~-------~~dlvvLAGyMrIL~~~fl~~~~grIlNI 107 (200)
T COG0299 63 ----------SREAFDRALVEALDEY-------GPDLVVLAGYMRILGPEFLSRFEGRILNI 107 (200)
T ss_pred ----------CHHHHHHHHHHHHHhc-------CCCEEEEcchHHHcCHHHHHHhhcceEec
Confidence 1123455667888888 999999877664 3444334433344444
No 461
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=25.56 E-value=72 Score=30.28 Aligned_cols=39 Identities=23% Similarity=0.281 Sum_probs=29.5
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhh
Q 043168 7 NIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (473)
Q Consensus 7 ~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~~ 51 (473)
||+++..|+.|. .+|..|.+ .||+|+++..+...+.+..
T Consensus 2 kI~IiG~G~iG~-----~~a~~L~~-~g~~V~~~~r~~~~~~~~~ 40 (305)
T PRK12921 2 RIAVVGAGAVGG-----TFGGRLLE-AGRDVTFLVRPKRAKALRE 40 (305)
T ss_pred eEEEECCCHHHH-----HHHHHHHH-CCCceEEEecHHHHHHHHh
Confidence 788888887775 67888999 9999999986444444444
No 462
>PRK13059 putative lipid kinase; Reviewed
Probab=25.50 E-value=2.7e+02 Score=26.35 Aligned_cols=28 Identities=21% Similarity=0.171 Sum_probs=22.4
Q ss_pred cceeeeccChhhHHHHH---h---cCCCEEeccc
Q 043168 348 ISAFLSHCGWNSVLEAL---S---HGVPIIGWPL 375 (473)
Q Consensus 348 ~~~~I~HgG~gs~~eal---~---~GvP~i~~P~ 375 (473)
.+.+|.-||=||+.|++ . .++|+-++|.
T Consensus 57 ~d~vi~~GGDGTv~evv~gl~~~~~~~~lgviP~ 90 (295)
T PRK13059 57 YKYILIAGGDGTVDNVVNAMKKLNIDLPIGILPV 90 (295)
T ss_pred CCEEEEECCccHHHHHHHHHHhcCCCCcEEEECC
Confidence 34799999999988874 2 3589999996
No 463
>PF14626 RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN domain
Probab=25.43 E-value=76 Score=25.39 Aligned_cols=32 Identities=6% Similarity=0.015 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhh
Q 043168 19 IIPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (473)
Q Consensus 19 v~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~~ 51 (473)
+.|++.|.=.+.- +||+++++-+..+...+..
T Consensus 9 Vk~L~eIll~Fil-rGHKT~vyLP~yY~~~~~~ 40 (122)
T PF14626_consen 9 VKALVEILLHFIL-RGHKTVVYLPKYYKNYVDD 40 (122)
T ss_pred HHHHHHHHHHHHh-ccCeeEEEChHHHhccccc
Confidence 5678888888888 9999999998888876665
No 464
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=25.41 E-value=6.5e+02 Score=26.56 Aligned_cols=62 Identities=13% Similarity=0.004 Sum_probs=35.1
Q ss_pred eeeeccChhhHHHHH--hcCCCEEecccccchhhhHHHHHHHHcceEEEecccCCccCHHHHHHHHHHHHc
Q 043168 350 AFLSHCGWNSVLEAL--SHGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAKFELVMN 418 (473)
Q Consensus 350 ~~I~HgG~gs~~eal--~~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ai~~~l~ 418 (473)
.+++++|+|.+...- .++-.....-+...+++.+..++ +.|..-.. --+.++|.+++++.+.
T Consensus 480 vV~NN~~y~~i~~~q~~~~~~~~~~~~~~~~~~d~~~la~---a~G~~~~~----v~~~~el~~al~~a~~ 543 (585)
T CHL00099 480 IIINNKWQGMVRQWQQAFYGERYSHSNMEEGAPDFVKLAE---AYGIKGLR----IKSRKDLKSSLKEALD 543 (585)
T ss_pred EEEECCcchHHHHHHHHhcCCCcccccCCCCCCCHHHHHH---HCCCeEEE----eCCHHHHHHHHHHHHh
Confidence 588999998765432 23333221111112456666666 33433322 2468999999998874
No 465
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=25.38 E-value=6e+02 Score=24.27 Aligned_cols=44 Identities=16% Similarity=0.184 Sum_probs=29.6
Q ss_pred ceEEEEcCCCccC-----HHHHHHHHHHHHhCCCcEEEEEcCCcchhhhh
Q 043168 6 ENIVMFPLMAQGH-----IIPFLALALHLENTNRYTITFVNTPSNLKKLK 50 (473)
Q Consensus 6 ~~Il~~~~~~~GH-----v~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~ 50 (473)
+-|++.|+.+.|. ..-+..|++.|.+ .|++|++++++...+..+
T Consensus 175 ~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~-~~~~ivl~G~~~e~~~~~ 223 (334)
T TIGR02195 175 PIIAFCPGAEFGPAKRWPHEHYAELAKRLID-QGYQVVLFGSAKDHPAGN 223 (334)
T ss_pred CEEEEcCCCCCCccCCCCHHHHHHHHHHHHH-CCCEEEEEEChhhHHHHH
Confidence 3455655443332 2357899999999 899999988776555443
No 466
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=25.33 E-value=1.5e+02 Score=26.05 Aligned_cols=39 Identities=8% Similarity=0.178 Sum_probs=29.8
Q ss_pred ceEEEEc-CCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcc
Q 043168 6 ENIVMFP-LMAQGHIIPFLALALHLENTNRYTITFVNTPSN 45 (473)
Q Consensus 6 ~~Il~~~-~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~ 45 (473)
+.|+|.+ -++-|-..=...||..|++ +|++|.++=....
T Consensus 18 kvI~v~s~kgG~GKTt~a~~LA~~la~-~G~rVllID~D~~ 57 (204)
T TIGR01007 18 KVLLITSVKPGEGKSTTSANIAVAFAQ-AGYKTLLIDGDMR 57 (204)
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHHHh-CCCeEEEEeCCCC
Confidence 3454443 3588888889999999999 9999998865433
No 467
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=25.02 E-value=4.8e+02 Score=22.97 Aligned_cols=62 Identities=15% Similarity=0.098 Sum_probs=32.8
Q ss_pred eeeeccChhhHHHHHh--cCCCEEeccc-------ccc-hhhhHHHHHHHHcceEEEecccCCccCHHHHHHHHHHHHc
Q 043168 350 AFLSHCGWNSVLEALS--HGVPIIGWPL-------AAE-QFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAKFELVMN 418 (473)
Q Consensus 350 ~~I~HgG~gs~~eal~--~GvP~i~~P~-------~~D-Q~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ai~~~l~ 418 (473)
.+++++|+|.+..... ++-......+ ... .++.++..+ .+|+- -. .--+.++|.+++++.+.
T Consensus 107 vV~NN~~yg~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~-a~G~~--~~----~v~~~~el~~al~~a~~ 178 (202)
T cd02006 107 VLVNNAYLGLIRQAQRAFDMDYQVNLAFENINSSELGGYGVDHVKVAE-GLGCK--AI----RVTKPEELAAAFEQAKK 178 (202)
T ss_pred EEEeCchHHHHHHHHHHhcCccccccccccccccccCCCCCCHHHHHH-HCCCE--EE----EECCHHHHHHHHHHHHH
Confidence 6899999997654321 1211100000 011 255665444 33543 22 13468899999998873
No 468
>PRK08611 pyruvate oxidase; Provisional
Probab=24.95 E-value=4.5e+02 Score=27.74 Aligned_cols=120 Identities=10% Similarity=0.049 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCcEEEEEcCCCCCCCccchhcccCCchhHHHhhccCCCCeEEecccChHHhhccc--------ccceee
Q 043168 281 MQLAMALEACGKNFIWVVKPPLGFDLNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVEILSHK--------SISAFL 352 (473)
Q Consensus 281 ~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~lL~~~--------~~~~~I 352 (473)
+.+++.|.+.|++.++.+.+. -...+.+.+.+...++.+..-......--.+ ..++++
T Consensus 8 ~~l~~~L~~~GV~~vFgipG~--------------~~~~l~dal~~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~ 73 (576)
T PRK08611 8 EALVKLLQDWGIDHVYGIPGD--------------SIDAVVDALRKEQDKIKFIQVRHEEVAALAAAAYAKLTGKIGVCL 73 (576)
T ss_pred HHHHHHHHHcCCCEEEecCCc--------------chHHHHHHHHhcCCCCeEEEeCcHHHHHHHHHHHHHHhCCceEEE
Q ss_pred eccChh------hHHHHHhcCCCEEec-------------ccccchhhhHHHHHHHHcceEEEecccCCccCHHHHHHHH
Q 043168 353 SHCGWN------SVLEALSHGVPIIGW-------------PLAAEQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAKF 413 (473)
Q Consensus 353 ~HgG~g------s~~eal~~GvP~i~~-------------P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ai 413 (473)
+|.|-| .+++|...++|+|++ .+..||....+-+. ....++.. ..--.+.+.+|+
T Consensus 74 ~t~GPG~~N~l~gla~A~~~~~Pvl~ItG~~~~~~~~~~~~q~~d~~~l~~~it---k~~~~v~~---~~~~~~~l~~A~ 147 (576)
T PRK08611 74 SIGGPGAIHLLNGLYDAKMDHVPVLALAGQVTSDLLGTDFFQEVNLEKMFEDVA---VYNHQIMS---AENLPEIVNQAI 147 (576)
T ss_pred ECCCCcHHHHHHHHHHHhhcCCCEEEEecCCcccccCCCCccccCHHHHhhccc---ceeEEeCC---HHHHHHHHHHHH
Q ss_pred HHHHcCC
Q 043168 414 ELVMNET 420 (473)
Q Consensus 414 ~~~l~~~ 420 (473)
+..++.+
T Consensus 148 ~~A~~~~ 154 (576)
T PRK08611 148 RTAYEKK 154 (576)
T ss_pred HHHhhCC
No 469
>PRK11914 diacylglycerol kinase; Reviewed
Probab=24.92 E-value=2.1e+02 Score=27.17 Aligned_cols=28 Identities=21% Similarity=0.234 Sum_probs=23.2
Q ss_pred cceeeeccChhhHHHHH----hcCCCEEeccc
Q 043168 348 ISAFLSHCGWNSVLEAL----SHGVPIIGWPL 375 (473)
Q Consensus 348 ~~~~I~HgG~gs~~eal----~~GvP~i~~P~ 375 (473)
.+.+|.-||=||+.|++ ..++|+-++|.
T Consensus 65 ~d~vvv~GGDGTi~evv~~l~~~~~~lgiiP~ 96 (306)
T PRK11914 65 TDALVVVGGDGVISNALQVLAGTDIPLGIIPA 96 (306)
T ss_pred CCEEEEECCchHHHHHhHHhccCCCcEEEEeC
Confidence 34799999999999887 34789999996
No 470
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=24.89 E-value=1.1e+02 Score=31.00 Aligned_cols=34 Identities=12% Similarity=0.072 Sum_probs=27.4
Q ss_pred HHHHHHhhhhhccCCCCCeEEEeCCCcchHHHHHHHhCCcEEEE
Q 043168 101 HFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALF 144 (473)
Q Consensus 101 ~l~~~l~~~~~~~~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~ 144 (473)
.+.+++++. +||+||.... ...+|+++|||++.+
T Consensus 364 ~l~~~i~~~-------~~dliig~s~---~k~~A~~l~ip~ir~ 397 (432)
T TIGR01285 364 DLEDLACAA-------GADLLITNSH---GRALAQRLALPLVRA 397 (432)
T ss_pred HHHHHHhhc-------CCCEEEECcc---hHHHHHHcCCCEEEe
Confidence 446677777 8999998753 477899999999987
No 471
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=24.86 E-value=3.1e+02 Score=27.45 Aligned_cols=30 Identities=20% Similarity=0.261 Sum_probs=21.8
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCC-CcEEEEEc
Q 043168 6 ENIVMFPLMAQGHIIPFLALALHLENTN-RYTITFVN 41 (473)
Q Consensus 6 ~~Il~~~~~~~GHv~P~l~LA~~L~~~r-Gh~Vt~~~ 41 (473)
+||+++..++..| +|+++|++ . |+.+.++.
T Consensus 1 ~kvliiG~G~~~~-----~l~~~l~~-~~~~~~i~~~ 31 (420)
T PRK00885 1 MKVLVIGSGGREH-----ALAWKLAQ-SPLVEKVYVA 31 (420)
T ss_pred CEEEEECCCHHHH-----HHHHHHHh-CCCCCEEEEe
Confidence 3899999997777 49999988 6 44444443
No 472
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=24.78 E-value=64 Score=29.80 Aligned_cols=27 Identities=22% Similarity=0.380 Sum_probs=22.4
Q ss_pred cceeeeccChhhHHHHHhc----CCCEEecc
Q 043168 348 ISAFLSHCGWNSVLEALSH----GVPIIGWP 374 (473)
Q Consensus 348 ~~~~I~HgG~gs~~eal~~----GvP~i~~P 374 (473)
++++|+-||=||++.|+.. ++|++.+-
T Consensus 26 ~Dlvi~iGGDGTlL~a~~~~~~~~~PvlGIN 56 (246)
T PRK04761 26 ADVIVALGGDGFMLQTLHRYMNSGKPVYGMN 56 (246)
T ss_pred CCEEEEECCCHHHHHHHHHhcCCCCeEEEEe
Confidence 4589999999999988654 68988874
No 473
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=24.73 E-value=80 Score=30.20 Aligned_cols=34 Identities=18% Similarity=0.110 Sum_probs=28.5
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCC
Q 043168 4 RKENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTP 43 (473)
Q Consensus 4 ~~~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~ 43 (473)
.++||.|+..|..|. ++|..|.. .||+|++....
T Consensus 3 ~~m~I~iiG~G~~G~-----~lA~~l~~-~G~~V~~~~r~ 36 (308)
T PRK14619 3 QPKTIAILGAGAWGS-----TLAGLASA-NGHRVRVWSRR 36 (308)
T ss_pred CCCEEEEECccHHHH-----HHHHHHHH-CCCEEEEEeCC
Confidence 356899998888875 78999999 99999988743
No 474
>PRK13604 luxD acyl transferase; Provisional
Probab=24.64 E-value=1.4e+02 Score=28.62 Aligned_cols=36 Identities=19% Similarity=0.228 Sum_probs=29.4
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEc
Q 043168 5 KENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVN 41 (473)
Q Consensus 5 ~~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~ 41 (473)
+..+++++.+..++-..+..+|+.|.+ +|+.|.-+=
T Consensus 36 ~~~~vIi~HGf~~~~~~~~~~A~~La~-~G~~vLrfD 71 (307)
T PRK13604 36 KNNTILIASGFARRMDHFAGLAEYLSS-NGFHVIRYD 71 (307)
T ss_pred CCCEEEEeCCCCCChHHHHHHHHHHHH-CCCEEEEec
Confidence 346777787877777679999999999 999988764
No 475
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=24.61 E-value=82 Score=27.25 Aligned_cols=120 Identities=16% Similarity=0.119 Sum_probs=58.8
Q ss_pred ccCHHHHHHHHHHH-HhCCCcEEEEEcCCcchhhhhhcCCCCCCceEEeccCCCCCCCC------CCCCCCC----CCCC
Q 043168 16 QGHIIPFLALALHL-ENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDL------PPCTENS----DSLP 84 (473)
Q Consensus 16 ~GHv~P~l~LA~~L-~~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~ip~~~~~~~l------~~~~~~~----~~~~ 84 (473)
.+.+.-.+.+|+.| .. .|.+|.+.-+. ....+.+. .++..+.++....+ -+ ....... ....
T Consensus 16 ~~~~e~~v~~a~~~~~~-~g~dViIsRG~-ta~~lr~~----~~iPVV~I~~s~~D-il~al~~a~~~~~~Iavv~~~~~ 88 (176)
T PF06506_consen 16 EASLEEAVEEARQLLES-EGADVIISRGG-TAELLRKH----VSIPVVEIPISGFD-ILRALAKAKKYGPKIAVVGYPNI 88 (176)
T ss_dssp E--HHHHHHHHHHHHTT-TT-SEEEEEHH-HHHHHHCC-----SS-EEEE---HHH-HHHHHHHCCCCTSEEEEEEESS-
T ss_pred EecHHHHHHHHHHhhHh-cCCeEEEECCH-HHHHHHHh----CCCCEEEECCCHhH-HHHHHHHHHhcCCcEEEEecccc
Confidence 35677788999999 78 99999888844 44555442 23345555432100 00 0000000 0000
Q ss_pred CCCchHHHHHHh--------hhhHHHHHHHhhhhhccCCCCCeEEEeCCCcchHHHHHHHhCCcEEEEccccH
Q 043168 85 FHLFPNFFESTL--------SFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALFVGGGS 149 (473)
Q Consensus 85 ~~~~~~~~~~~~--------~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~~~~~~ 149 (473)
......+...+. ....++...++..... +.|+||.+.. ...+|+++|+|++.+.++.-
T Consensus 89 ~~~~~~~~~ll~~~i~~~~~~~~~e~~~~i~~~~~~----G~~viVGg~~---~~~~A~~~gl~~v~i~sg~e 154 (176)
T PF06506_consen 89 IPGLESIEELLGVDIKIYPYDSEEEIEAAIKQAKAE----GVDVIVGGGV---VCRLARKLGLPGVLIESGEE 154 (176)
T ss_dssp SCCHHHHHHHHT-EEEEEEESSHHHHHHHHHHHHHT----T--EEEESHH---HHHHHHHTTSEEEESS--HH
T ss_pred cHHHHHHHHHhCCceEEEEECCHHHHHHHHHHHHHc----CCcEEECCHH---HHHHHHHcCCcEEEEEecHH
Confidence 111233333331 1234555555554332 7999999963 46789999999998865443
No 476
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=24.54 E-value=1.7e+02 Score=27.12 Aligned_cols=39 Identities=15% Similarity=0.008 Sum_probs=28.9
Q ss_pred hHHHHHHHhhhhhccCCCCCeEEEeCCCcch------HHHHHHHhCCcEEEE
Q 043168 99 KPHFRKLINGLIDEQNGHKPVCIIADMFFAW------SAEIAQEYGIFNALF 144 (473)
Q Consensus 99 ~~~l~~~l~~~~~~~~~~~pDlVI~D~~~~~------~~~~A~~~giP~v~~ 144 (473)
.+.+.+++++. +.|+||=-.+-+. ++.+|++.|||++.+
T Consensus 55 ~e~l~~~l~e~-------~i~llIDATHPyAa~iS~Na~~aake~gipy~r~ 99 (257)
T COG2099 55 AEGLAAFLREE-------GIDLLIDATHPYAARISQNAARAAKETGIPYLRL 99 (257)
T ss_pred HHHHHHHHHHc-------CCCEEEECCChHHHHHHHHHHHHHHHhCCcEEEE
Confidence 35668899999 8998873333332 246899999999998
No 477
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=24.49 E-value=5.3e+02 Score=23.29 Aligned_cols=44 Identities=16% Similarity=0.186 Sum_probs=32.2
Q ss_pred hhhhhhccCCCCceEEEEecCcccCCHHHHHHHHHHHHhCCCcEE
Q 043168 251 SCKNWLDTKPCNSVIYVSFGSQNTIAASQMMQLAMALEACGKNFI 295 (473)
Q Consensus 251 ~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i 295 (473)
-+.+|+... .+.+.||=+-|...-....+++..++|++.|+.+.
T Consensus 23 ~i~n~l~g~-~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~ 66 (224)
T COG3340 23 FIANFLQGK-RKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVS 66 (224)
T ss_pred HHHHHhcCC-CceEEEEecCccccchHHHHHHHHHHHHHcCCeee
Confidence 344455443 35699998888876666788889999999988764
No 478
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=24.44 E-value=1.3e+02 Score=30.04 Aligned_cols=44 Identities=25% Similarity=0.253 Sum_probs=31.3
Q ss_pred HhhhhHHHHHHHhhhhhccCCCCCeEEEeCCCcch-------HH---HHHHHhCCcEEEEc
Q 043168 95 TLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAW-------SA---EIAQEYGIFNALFV 145 (473)
Q Consensus 95 ~~~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~~~-------~~---~~A~~~giP~v~~~ 145 (473)
.+...+.+.+.++.. +||++|+.+.+-. +. .+.++++||.++-.
T Consensus 61 ~eea~~~i~~mv~k~-------~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vtaM 114 (431)
T TIGR01917 61 LEEAKAKVLEMIKGA-------NPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTAM 114 (431)
T ss_pred HHHHHHHHHHHHHhc-------CCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 344556677888888 9999999886642 21 24567999998853
No 479
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=24.44 E-value=1.3e+02 Score=30.02 Aligned_cols=44 Identities=9% Similarity=0.061 Sum_probs=31.3
Q ss_pred HhhhhHHHHHHHhhhhhccCCCCCeEEEeCCCcch-------HH---HHHHHhCCcEEEEc
Q 043168 95 TLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAW-------SA---EIAQEYGIFNALFV 145 (473)
Q Consensus 95 ~~~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~~~-------~~---~~A~~~giP~v~~~ 145 (473)
.+...+.+.+.++.. +||++|+.+.+-. +. .+.++++||.++-.
T Consensus 61 ~eea~~~i~~mv~k~-------~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~M 114 (431)
T TIGR01918 61 LEEAVARVLEMLKDK-------EPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTSM 114 (431)
T ss_pred HHHHHHHHHHHHHhc-------CCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 344556677888888 9999999886642 21 24567999998853
No 480
>PLN02735 carbamoyl-phosphate synthase
Probab=24.42 E-value=6.1e+02 Score=29.34 Aligned_cols=39 Identities=13% Similarity=0.217 Sum_probs=30.0
Q ss_pred CceEEEEcCCC--ccCH----HHHHHHHHHHHhCCCcEEEEEcCCc
Q 043168 5 KENIVMFPLMA--QGHI----IPFLALALHLENTNRYTITFVNTPS 44 (473)
Q Consensus 5 ~~~Il~~~~~~--~GHv----~P~l~LA~~L~~~rGh~Vt~~~~~~ 44 (473)
.+|||++..+. .|+. ..-..++++|++ .||+|+.+.+..
T Consensus 23 ~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke-~G~~Vi~vd~np 67 (1102)
T PLN02735 23 LKKIMILGAGPIVIGQACEFDYSGTQACKALKE-EGYEVVLINSNP 67 (1102)
T ss_pred CCEEEEECCCccccccceeecchHHHHHHHHHH-cCCEEEEEeCCc
Confidence 45899988774 4544 446789999999 999999988553
No 481
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=24.35 E-value=1.4e+02 Score=28.57 Aligned_cols=44 Identities=20% Similarity=0.064 Sum_probs=35.0
Q ss_pred eEE-EEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchhhhhh
Q 043168 7 NIV-MFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (473)
Q Consensus 7 ~Il-~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~v~~ 51 (473)
|++ |..-|+-|-.+-..++|-.+++ +|++|.+++++..+..-.-
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~-~G~rtLlvS~Dpa~~L~d~ 46 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALAR-RGKRTLLVSTDPAHSLSDV 46 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHH-TTS-EEEEESSTTTHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhh-CCCCeeEeecCCCccHHHH
Confidence 454 4455899999999999999999 9999999998887665443
No 482
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=24.29 E-value=4.7e+02 Score=22.61 Aligned_cols=62 Identities=15% Similarity=-0.040 Sum_probs=32.0
Q ss_pred eeeeccChhhHHHHHh--cCCCEEecccccchhhhHHHHHHHHcceEEEecccCCccCHHHHHHHHHHHHcC
Q 043168 350 AFLSHCGWNSVLEALS--HGVPIIGWPLAAEQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAKFELVMNE 419 (473)
Q Consensus 350 ~~I~HgG~gs~~eal~--~GvP~i~~P~~~DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ai~~~l~~ 419 (473)
.+++++|++.+..... ++-..... .....++.++..+ .+|+--.. --+.+++.+++++.++.
T Consensus 100 vV~nN~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~a~-a~G~~~~~------v~~~~el~~al~~a~~~ 163 (186)
T cd02015 100 VILNNGSLGMVRQWQELFYEGRYSHT-TLDSNPDFVKLAE-AYGIKGLR------VEKPEELEAALKEALAS 163 (186)
T ss_pred EEEECCccHHHHHHHHHHcCCceeec-cCCCCCCHHHHHH-HCCCceEE------eCCHHHHHHHHHHHHhC
Confidence 6889999987754321 22111110 0111245555555 33543221 12578888888887753
No 483
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=24.18 E-value=3.7e+02 Score=28.27 Aligned_cols=27 Identities=15% Similarity=0.129 Sum_probs=21.4
Q ss_pred cceeeeccChh------hHHHHHhcCCCEEecc
Q 043168 348 ISAFLSHCGWN------SVLEALSHGVPIIGWP 374 (473)
Q Consensus 348 ~~~~I~HgG~g------s~~eal~~GvP~i~~P 374 (473)
.+++++|.|-| .+++|...++|+|++-
T Consensus 73 ~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~ 105 (569)
T PRK09259 73 PGVCLTVSAPGFLNGLTALANATTNCFPMIMIS 105 (569)
T ss_pred CEEEEEcCCccHHHHHHHHHHHHhcCCCEEEEE
Confidence 44678887754 6789999999999874
No 484
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=24.10 E-value=8.3e+02 Score=25.66 Aligned_cols=120 Identities=9% Similarity=-0.009 Sum_probs=61.5
Q ss_pred ceEEEEecCcccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCccchhcccCCchhHHHhhccCCCCeEEecccChHHh
Q 043168 263 SVIYVSFGSQNTIAASQMMQLAMALEACGKNFIWVVKPPLGFDLNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVEI 342 (473)
Q Consensus 263 ~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~l 342 (473)
|.-|++-|..+.+....=..+-.+++..+.++|.++|.+. +.- -..++.-..+ ..-++
T Consensus 411 p~~~~~~~~~g~mG~glpaaiGa~la~p~~~vv~i~GDG~-------f~m---~~~eL~Ta~r-~~l~v----------- 468 (574)
T PRK07979 411 PRRWINSGGLGTMGFGLPAALGVKMALPEETVVCVTGDGS-------IQM---NIQELSTALQ-YELPV----------- 468 (574)
T ss_pred CCeEEeCCCccchhhHHHHHHHHHHhCCCCeEEEEEcchh-------hhc---cHHHHHHHHH-hCCCe-----------
Confidence 3445655544444444445566667777888888887652 100 1111111110 01111
Q ss_pred hcccccceeeeccChhhHHHH--HhcCCCEEeccccc-chhhhHHHHHHHHcceEEEecccCCccCHHHHHHHHHHHHc
Q 043168 343 LSHKSISAFLSHCGWNSVLEA--LSHGVPIIGWPLAA-EQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAKFELVMN 418 (473)
Q Consensus 343 L~~~~~~~~I~HgG~gs~~ea--l~~GvP~i~~P~~~-DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~ai~~~l~ 418 (473)
+-.+++++|+|.+..- ..++-+.- .... ..++.+...+ .+|+- -. .--+.++|.+++++.++
T Consensus 469 -----~ivV~NN~~yg~i~~~q~~~~~~~~~--~~~~~~~~d~~~iA~-a~G~~--g~----~v~~~~eL~~al~~a~~ 533 (574)
T PRK07979 469 -----LVLNLNNRYLGMVKQWQDMIYSGRHS--QSYMQSLPDFVRLAE-AYGHV--GI----QISHPDELESKLSEALE 533 (574)
T ss_pred -----EEEEEeCchhhHHHHHHHHhcCCccc--cccCCCCCCHHHHHH-HCCCE--EE----EECCHHHHHHHHHHHHh
Confidence 2258999999986533 22332210 0111 1356676665 33542 22 13478899999998885
No 485
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=23.81 E-value=1.2e+02 Score=28.28 Aligned_cols=35 Identities=9% Similarity=0.056 Sum_probs=31.4
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcC
Q 043168 7 NIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNT 42 (473)
Q Consensus 7 ~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~ 42 (473)
.|.|+.-|+-|-.+-.+.||..|.+ +|++|.++=.
T Consensus 3 ~iav~~KGGVGKTT~~~nLA~~La~-~G~rVLlID~ 37 (274)
T PRK13235 3 KVAIYGKGGIGKSTTTQNTVAGLAE-MGKKVMVVGC 37 (274)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHH-CCCcEEEEec
Confidence 6777777899999999999999999 9999999853
No 486
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=23.75 E-value=1.3e+02 Score=23.77 Aligned_cols=69 Identities=14% Similarity=0.125 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhCCCcEEEEEcCCCCCCCccchhcccCCchhHHHhhccCCCCeEEe-------cccChHHhhccc-ccc
Q 043168 278 SQMMQLAMALEACGKNFIWVVKPPLGFDLNSEFRANEWLPEGFEERIKDSGQGLVVQ-------KWAPQVEILSHK-SIS 349 (473)
Q Consensus 278 ~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-------~~~p~~~lL~~~-~~~ 349 (473)
.....++.++++.|++++.+..... .....+. . .+.++.. .|+....++.-+ .-+
T Consensus 12 eia~r~~ra~r~~Gi~tv~v~s~~d------------~~s~~~~--~---ad~~~~~~~~~~~~~yl~~e~I~~ia~~~g 74 (110)
T PF00289_consen 12 EIAVRIIRALRELGIETVAVNSNPD------------TVSTHVD--M---ADEAYFEPPGPSPESYLNIEAIIDIARKEG 74 (110)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEEGGG------------TTGHHHH--H---SSEEEEEESSSGGGTTTSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCcceeccCchh------------ccccccc--c---cccceecCcchhhhhhccHHHHhhHhhhhc
Confidence 3467788999999999998876441 1111111 1 2223322 466665555432 014
Q ss_pred eeeeccChhhHHHH
Q 043168 350 AFLSHCGWNSVLEA 363 (473)
Q Consensus 350 ~~I~HgG~gs~~ea 363 (473)
+...|+|+|-+.|.
T Consensus 75 ~~~i~pGyg~lse~ 88 (110)
T PF00289_consen 75 ADAIHPGYGFLSEN 88 (110)
T ss_dssp ESEEESTSSTTTTH
T ss_pred CcccccccchhHHH
Confidence 67889999877665
No 487
>PRK14974 cell division protein FtsY; Provisional
Probab=23.69 E-value=1.6e+02 Score=28.67 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=34.8
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcch
Q 043168 5 KENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNL 46 (473)
Q Consensus 5 ~~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~ 46 (473)
+..|+|+..++.|-.+-+..||..|.. .|++|.+++...+.
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~-~g~~V~li~~Dt~R 180 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKK-NGFSVVIAAGDTFR 180 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHH-cCCeEEEecCCcCc
Confidence 345678888899999999999999999 99999998876543
No 488
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=23.56 E-value=1.7e+02 Score=21.38 Aligned_cols=33 Identities=18% Similarity=0.141 Sum_probs=28.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEc
Q 043168 8 IVMFPLMAQGHIIPFLALALHLENTNRYTITFVN 41 (473)
Q Consensus 8 Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~ 41 (473)
+++...++.|-..-...+|..|++ .|++|.++-
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-RGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEC
Confidence 456666788888899999999999 999998887
No 489
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=23.50 E-value=2.2e+02 Score=21.93 Aligned_cols=39 Identities=15% Similarity=0.172 Sum_probs=29.0
Q ss_pred hhhHHHHHHHhhhhhccCCCCCeEEEeCCCcchHH--HHHHHhCCcEE
Q 043168 97 SFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSA--EIAQEYGIFNA 142 (473)
Q Consensus 97 ~~~~~l~~~l~~~~~~~~~~~pDlVI~D~~~~~~~--~~A~~~giP~v 142 (473)
...+.+.++++.. ..|+||.|.-..... .+.+.+|++++
T Consensus 44 GK~eei~~~~~~~-------~~d~vvfd~~Lsp~Q~rNLe~~~~~~V~ 84 (95)
T PF13167_consen 44 GKVEEIKELIEEL-------DADLVVFDNELSPSQQRNLEKALGVKVI 84 (95)
T ss_pred hHHHHHHHHHhhc-------CCCEEEECCCCCHHHHHHHHHHHCCeee
Confidence 4455667777777 899999998766554 47888898864
No 490
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=23.48 E-value=2.1e+02 Score=22.38 Aligned_cols=41 Identities=20% Similarity=0.247 Sum_probs=23.3
Q ss_pred cccChHHhhcccccceeeeccCh----hhHHHHHhcCCCEEe-ccc
Q 043168 335 KWAPQVEILSHKSISAFLSHCGW----NSVLEALSHGVPIIG-WPL 375 (473)
Q Consensus 335 ~~~p~~~lL~~~~~~~~I~HgG~----gs~~eal~~GvP~i~-~P~ 375 (473)
-|-...+++..+++++++--... -.+.+++.+|+++++ -|+
T Consensus 50 ~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~~~~l~~g~~v~~EKP~ 95 (120)
T PF01408_consen 50 VYTDLEELLADEDVDAVIIATPPSSHAEIAKKALEAGKHVLVEKPL 95 (120)
T ss_dssp EESSHHHHHHHTTESEEEEESSGGGHHHHHHHHHHTTSEEEEESSS
T ss_pred chhHHHHHHHhhcCCEEEEecCCcchHHHHHHHHHcCCEEEEEcCC
Confidence 44456778886666666543332 234556666666655 444
No 491
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=23.44 E-value=86 Score=30.32 Aligned_cols=36 Identities=22% Similarity=0.399 Sum_probs=28.9
Q ss_pred hcccccceeeeccChhhHHHHHh---cCCCEEecccccc
Q 043168 343 LSHKSISAFLSHCGWNSVLEALS---HGVPIIGWPLAAE 378 (473)
Q Consensus 343 L~~~~~~~~I~HgG~gs~~eal~---~GvP~i~~P~~~D 378 (473)
|..-.++.+|.=||.+|...|.. .|+|+|++|-..|
T Consensus 90 l~~~~Id~LivIGGdgS~~~a~~L~~~gi~vigiPkTID 128 (324)
T TIGR02483 90 LKELGLDALIAIGGDGTLGIARRLADKGLPVVGVPKTID 128 (324)
T ss_pred HHHcCCCEEEEECCchHHHHHHHHHhcCCCEEeeccccC
Confidence 44456889999999999987755 5999999997543
No 492
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=23.38 E-value=1.4e+02 Score=28.01 Aligned_cols=37 Identities=19% Similarity=0.197 Sum_probs=27.2
Q ss_pred CCCCCceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEc
Q 043168 1 MAQRKENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVN 41 (473)
Q Consensus 1 m~~~~~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~ 41 (473)
|.+++.+-++++..+.|= -..+|+.|++ +||+|+++.
T Consensus 1 ~~~~~~~~~lITGASsGI---G~~~A~~lA~-~g~~liLva 37 (265)
T COG0300 1 PGPMKGKTALITGASSGI---GAELAKQLAR-RGYNLILVA 37 (265)
T ss_pred CCCCCCcEEEEECCCchH---HHHHHHHHHH-CCCEEEEEe
Confidence 334455667777665552 4688999999 999999988
No 493
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=23.36 E-value=1.3e+02 Score=31.23 Aligned_cols=25 Identities=8% Similarity=0.008 Sum_probs=21.4
Q ss_pred CCeEEEeCCCcchHHHHHHHhCCcEEEE
Q 043168 117 KPVCIIADMFFAWSAEIAQEYGIFNALF 144 (473)
Q Consensus 117 ~pDlVI~D~~~~~~~~~A~~~giP~v~~ 144 (473)
+||++|.+.. +..+|+++|||++.+
T Consensus 437 ~~DlliG~s~---~k~~a~~~giPlir~ 461 (515)
T TIGR01286 437 PVDFLIGNSY---GKYIQRDTLVPLIRI 461 (515)
T ss_pred CCCEEEECch---HHHHHHHcCCCEEEe
Confidence 8999998852 577899999999987
No 494
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=23.29 E-value=1.6e+02 Score=26.79 Aligned_cols=43 Identities=19% Similarity=0.112 Sum_probs=28.0
Q ss_pred HHHHHHHhhhhhccCCCCCeEEEeCCCcc--hHHHHHHH----hCCcEEEEccccH
Q 043168 100 PHFRKLINGLIDEQNGHKPVCIIADMFFA--WSAEIAQE----YGIFNALFVGGGS 149 (473)
Q Consensus 100 ~~l~~~l~~~~~~~~~~~pDlVI~D~~~~--~~~~~A~~----~giP~v~~~~~~~ 149 (473)
+.....+++| +||++|+-.=.. .+...|++ .|+|||.++-.+.
T Consensus 50 ~~~~~~~~~~-------~pDf~i~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~ 98 (277)
T PRK00994 50 EVVKKMLEEW-------KPDFVIVISPNPAAPGPKKAREILKAAGIPCIVIGDAPG 98 (277)
T ss_pred HHHHHHHHhh-------CCCEEEEECCCCCCCCchHHHHHHHhcCCCEEEEcCCCc
Confidence 3456677899 999877543232 34555554 4999999865443
No 495
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=23.21 E-value=1.4e+02 Score=30.18 Aligned_cols=40 Identities=15% Similarity=0.154 Sum_probs=35.0
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCCcchh
Q 043168 7 NIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTPSNLK 47 (473)
Q Consensus 7 ~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~ 47 (473)
-|+|+..++.|-.+-...||..|.. +|++|.+++.+.+..
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~l~~-~G~kV~lV~~D~~R~ 141 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYYYQR-KGFKPCLVCADTFRA 141 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEcCcccch
Confidence 4677777899999999999999999 999999999877653
No 496
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=23.13 E-value=1e+02 Score=31.16 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=26.8
Q ss_pred CCCCCceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCC
Q 043168 1 MAQRKENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTP 43 (473)
Q Consensus 1 m~~~~~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~ 43 (473)
|..+.++++++..+ . .. +.+|+.|.+ +||+|+++...
T Consensus 1 ~~~~~k~v~iiG~g---~-~G-~~~A~~l~~-~G~~V~~~d~~ 37 (450)
T PRK14106 1 MELKGKKVLVVGAG---V-SG-LALAKFLKK-LGAKVILTDEK 37 (450)
T ss_pred CCcCCCEEEEECCC---H-HH-HHHHHHHHH-CCCEEEEEeCC
Confidence 54455677777433 3 33 489999999 99999988754
No 497
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=23.08 E-value=88 Score=30.15 Aligned_cols=37 Identities=30% Similarity=0.479 Sum_probs=29.3
Q ss_pred hhcccccceeeeccChhhHHHHHh---cCCCEEecccccc
Q 043168 342 ILSHKSISAFLSHCGWNSVLEALS---HGVPIIGWPLAAE 378 (473)
Q Consensus 342 lL~~~~~~~~I~HgG~gs~~eal~---~GvP~i~~P~~~D 378 (473)
.|..-.++.+|.=||.||..-|.. +|+|+|++|-..|
T Consensus 87 ~l~~~~Id~Li~IGGdgs~~~a~~L~e~~i~vigiPkTID 126 (317)
T cd00763 87 QLKKHGIDALVVIGGDGSYMGAMRLTEHGFPCVGLPGTID 126 (317)
T ss_pred HHHHcCCCEEEEECCchHHHHHHHHHHcCCCEEEeccccc
Confidence 345557889999999999987755 5999999997543
No 498
>PRK07524 hypothetical protein; Provisional
Probab=23.07 E-value=5.7e+02 Score=26.59 Aligned_cols=120 Identities=14% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCcEEEEEcCCCCCCCccchhcccCCchhHHHhhccCCCCeEEecccChHHhhccc------ccceeeec
Q 043168 281 MQLAMALEACGKNFIWVVKPPLGFDLNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVEILSHK------SISAFLSH 354 (473)
Q Consensus 281 ~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~lL~~~------~~~~~I~H 354 (473)
+.+++.|++.|++.++-+.+. -...+.+.+.+..-.++....=--...++.. ..++++.|
T Consensus 6 ~~l~~~L~~~Gv~~vFg~pG~--------------~~~~~~dal~~~~i~~i~~~hE~~A~~mAdgyar~tg~~gv~~~t 71 (535)
T PRK07524 6 EALVRLLEAYGVETVFGIPGV--------------HTVELYRGLAGSGIRHVTPRHEQGAGFMADGYARVSGKPGVCFII 71 (535)
T ss_pred HHHHHHHHHcCCCEEEeCCCc--------------chHHHHHHHhhcCCcEEEeccHHHHHHHHHHHHHHhCCCeEEEEC
Q ss_pred cChh------hHHHHHhcCCCEEec--------------cccc--chhhhHHHHHHHHcceEEEecccCCccCHHHHHHH
Q 043168 355 CGWN------SVLEALSHGVPIIGW--------------PLAA--EQFYNSKLLEEVIGVCVEVARGMNCEVSKENLSAK 412 (473)
Q Consensus 355 gG~g------s~~eal~~GvP~i~~--------------P~~~--DQ~~~a~~v~~~lG~G~~l~~~~~~~~~~~~l~~a 412 (473)
.|-| .+++|...++|+|++ .+.. ||....+-+. .....+.. .+--.+.+.+|
T Consensus 72 ~GpG~~n~~~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~~~~~~~d~~~l~~~~t---k~~~~v~~---~~~~~~~l~~A 145 (535)
T PRK07524 72 TGPGMTNIATAMGQAYADSIPMLVISSVNRRASLGKGRGKLHELPDQRAMVAGVA---AFSHTLMS---AEDLPEVLARA 145 (535)
T ss_pred CCccHHHHHHHHHHHHhcCCCEEEEeCCCChhhcCCCCccccccccHHHHhhhhc---eeEEEeCC---HHHHHHHHHHH
Q ss_pred HHHHHcCC
Q 043168 413 FELVMNET 420 (473)
Q Consensus 413 i~~~l~~~ 420 (473)
++..++.+
T Consensus 146 ~~~A~~~~ 153 (535)
T PRK07524 146 FAVFDSAR 153 (535)
T ss_pred HHHHhcCC
No 499
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=22.92 E-value=1.4e+02 Score=27.77 Aligned_cols=36 Identities=6% Similarity=0.002 Sum_probs=30.7
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcCC
Q 043168 7 NIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNTP 43 (473)
Q Consensus 7 ~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~ 43 (473)
.|.+.--|+-|-.+-...||..|.+ +|++|.++=..
T Consensus 4 iIav~~KGGVGKTT~~~nLA~~la~-~G~kVLliD~D 39 (270)
T PRK13185 4 VLAVYGKGGIGKSTTSSNLSAAFAK-LGKKVLQIGCD 39 (270)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEecc
Confidence 5566656899999999999999999 99999988543
No 500
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=22.76 E-value=3.4e+02 Score=23.53 Aligned_cols=36 Identities=19% Similarity=0.217 Sum_probs=24.6
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEcC
Q 043168 6 ENIVMFPLMAQGHIIPFLALALHLENTNRYTITFVNT 42 (473)
Q Consensus 6 ~~Il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~ 42 (473)
-.|.+++..+.|-.+..+.+|-+-.- +|.+|.++-.
T Consensus 4 G~i~vytG~GKGKTTAAlGlalRA~G-~G~rV~ivQF 39 (172)
T PF02572_consen 4 GLIQVYTGDGKGKTTAALGLALRAAG-HGMRVLIVQF 39 (172)
T ss_dssp --EEEEESSSS-HHHHHHHHHHHHHC-TT--EEEEES
T ss_pred cEEEEEeCCCCCchHHHHHHHHHHHh-CCCEEEEEEE
Confidence 35788899999999877777666666 7888988874
Done!