BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043169
(421 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-N-Acetylgalactosamine
pdb|1SB9|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-Glucose
Length = 352
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 102/330 (30%), Positives = 163/330 (49%), Gaps = 22/330 (6%)
Query: 94 LVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNH--GVFVIEGDI 151
L+TG AGF+G+++ L K VVGLDNF + +L + R + I+GDI
Sbjct: 31 LITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDI 90
Query: 152 NDAKLLAKLFDAVA-FTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQP 210
+ L +A A +V+H AA V ++ +P + +NI G + +L A + A Q
Sbjct: 91 RN---LDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQ- 146
Query: 211 SIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFF 270
S +A+SSS YG + +P E D +P S YA TK E A ++ YG S GLR+F
Sbjct: 147 SFTYAASSSTYGDHPGLPKVE-DTIGKPLSPYAVTKYVNELYADVFSRCYGFSTIGLRYF 205
Query: 271 TVYGPWGRPDMAYFS----FTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLD 326
V+G P+ AY + +T +++QG + + + +RDF YI++ V+ L L
Sbjct: 206 NVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYI---NGDGETSRDFCYIENTVQANL--LA 260
Query: 327 TSAG-PAPYRIFNLGNTSPVTVPKLVNILERHLKVKA----KKNVIEMPGNGDVPFTHAN 381
+AG A +++N+ ++ +L L L ++ V GDV + A+
Sbjct: 261 ATAGLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFREGDVRHSLAD 320
Query: 382 ISSAQKEFGYRPTTDLQTGLKKFVRWYLSY 411
IS A K GY P D+ G+ + WY+ +
Sbjct: 321 ISKAAKLLGYAPKYDVSAGVALAMPWYIMF 350
>pdb|3RU9|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUD|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
Length = 351
Score = 122 bits (305), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 96/329 (29%), Positives = 161/329 (48%), Gaps = 20/329 (6%)
Query: 94 LVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNH--GVFVIEGDI 151
L+TG AGF+G+++ L K V+GLDNF+ + +L + + + IEGDI
Sbjct: 29 LITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDI 88
Query: 152 NDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPS 211
D ++ V HV+H AA V ++ +P + +NI G + +L A K+A Q S
Sbjct: 89 RDLTTCEQVMKGV--DHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQ-S 145
Query: 212 IVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFT 271
+A+SSS YG + +P E + P S YA TK E A Y YG GLR+F
Sbjct: 146 FTYAASSSTYGDHPALPKVE-ENIGNPLSPYAVTKYVNEIYAQVYARTYGFKTIGLRYFN 204
Query: 272 VYGPWGRPDMAYFS----FTRNILQGKPITVYRGKNHVDLARDFTYIDDIVK-GCLGSLD 326
V+G P+ AY + +T +L+G + + + +RDF YID++++ L +L
Sbjct: 205 VFGRRQDPNGAYAAVIPKWTAAMLKGDDVYI---NGDGETSRDFCYIDNVIQMNILSAL- 260
Query: 327 TSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMP----GNGDVPFTHANI 382
+ A I+N+ T+ +L + L + + + + +GDV + A++
Sbjct: 261 -AKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFRSGDVRHSQADV 319
Query: 383 SSAQKEFGYRPTTDLQTGLKKFVRWYLSY 411
+ A YRP ++ GL+ + WY+ +
Sbjct: 320 TKAIDLLKYRPNIKIREGLRLSMPWYVRF 348
>pdb|3RU7|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 122 bits (305), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 96/329 (29%), Positives = 161/329 (48%), Gaps = 20/329 (6%)
Query: 94 LVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNH--GVFVIEGDI 151
L+TG AGF+G+++ L K V+GLDNF+ + +L + + + IEGDI
Sbjct: 23 LITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDI 82
Query: 152 NDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPS 211
D ++ V HV+H AA V ++ +P + +NI G + +L A K+A Q S
Sbjct: 83 RDLTTCEQVMKGV--DHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQ-S 139
Query: 212 IVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFT 271
+A+SSS YG + +P E + P S YA TK E A Y YG GLR+F
Sbjct: 140 FTYAASSSTYGDHPALPKVE-ENIGNPLSPYAVTKYVNEIYAQVYARTYGFKTIGLRYFN 198
Query: 272 VYGPWGRPDMAYFS----FTRNILQGKPITVYRGKNHVDLARDFTYIDDIVK-GCLGSLD 326
V+G P+ AY + +T +L+G + + + +RDF YID++++ L +L
Sbjct: 199 VFGRRQDPNGAYAAVIPKWTAAMLKGDDVYI---NGDGETSRDFCYIDNVIQMNILSAL- 254
Query: 327 TSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMP----GNGDVPFTHANI 382
+ A I+N+ T+ +L + L + + + + +GDV + A++
Sbjct: 255 -AKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFRSGDVRHSQADV 313
Query: 383 SSAQKEFGYRPTTDLQTGLKKFVRWYLSY 411
+ A YRP ++ GL+ + WY+ +
Sbjct: 314 TKAIDLLKYRPNIKIREGLRLSMPWYVRF 342
>pdb|3LU1|A Chain A, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|B Chain B, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|C Chain C, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|D Chain D, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
Length = 364
Score = 122 bits (305), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 96/329 (29%), Positives = 161/329 (48%), Gaps = 20/329 (6%)
Query: 94 LVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNH--GVFVIEGDI 151
L+TG AGF+G+++ L K V+GLDNF+ + +L + + + IEGDI
Sbjct: 42 LITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDI 101
Query: 152 NDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPS 211
D ++ V HV+H AA V ++ +P + +NI G + +L A K+A Q S
Sbjct: 102 RDLTTCEQVMKGV--DHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQ-S 158
Query: 212 IVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFT 271
+A+SSS YG + +P E + P S YA TK E A Y YG GLR+F
Sbjct: 159 FTYAASSSTYGDHPALPKVE-ENIGNPLSPYAVTKYVNEIYAQVYARTYGFKTIGLRYFN 217
Query: 272 VYGPWGRPDMAYFS----FTRNILQGKPITVYRGKNHVDLARDFTYIDDIVK-GCLGSLD 326
V+G P+ AY + +T +L+G + + + +RDF YID++++ L +L
Sbjct: 218 VFGRRQDPNGAYAAVIPKWTAAMLKGDDVYI---NGDGETSRDFCYIDNVIQMNILSAL- 273
Query: 327 TSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMP----GNGDVPFTHANI 382
+ A I+N+ T+ +L + L + + + + +GDV + A++
Sbjct: 274 -AKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFRSGDVRHSQADV 332
Query: 383 SSAQKEFGYRPTTDLQTGLKKFVRWYLSY 411
+ A YRP ++ GL+ + WY+ +
Sbjct: 333 TKAIDLLKYRPNIKIREGLRLSMPWYVRF 361
>pdb|3RUC|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 121 bits (304), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 96/329 (29%), Positives = 161/329 (48%), Gaps = 20/329 (6%)
Query: 94 LVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNH--GVFVIEGDI 151
L+TG AGF+G+++ L K V+GLDNF+ + +L + + + IEGDI
Sbjct: 29 LITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDI 88
Query: 152 NDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPS 211
D ++ V HV+H AA V ++ +P + +NI G + +L A K+A Q S
Sbjct: 89 RDLTTCEQVMKGV--DHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQ-S 145
Query: 212 IVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFT 271
+A+SSS YG + +P E + P S YA TK E A Y YG GLR+F
Sbjct: 146 FTYAASSSTYGDHPALPKVE-ENIGNPLSPYAVTKYVNEIYAQVYARTYGFKTIGLRYFN 204
Query: 272 VYGPWGRPDMAYFS----FTRNILQGKPITVYRGKNHVDLARDFTYIDDIVK-GCLGSLD 326
V+G P+ AY + +T +L+G + + + +RDF YID++++ L +L
Sbjct: 205 VFGRRQDPNGAYAAVIPKWTAAMLKGDDVYI---NGDGETSRDFCYIDNVIQMNILSAL- 260
Query: 327 TSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMP----GNGDVPFTHANI 382
+ A I+N+ T+ +L + L + + + + +GDV + A++
Sbjct: 261 -AKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFRSGDVRASQADV 319
Query: 383 SSAQKEFGYRPTTDLQTGLKKFVRWYLSY 411
+ A YRP ++ GL+ + WY+ +
Sbjct: 320 TKAIDLLKYRPNIKIREGLRLSMPWYVRF 348
>pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex
With Nad+
pdb|1EK6|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
pdb|1EK6|B Chain B, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
Length = 348
Score = 109 bits (273), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 101/345 (29%), Positives = 156/345 (45%), Gaps = 43/345 (12%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYD------PSLKKARKALLNNHGVFV 146
VLVTG AG++G+H L L + G V +DNF+N + SL++ ++ L V
Sbjct: 5 VLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQE--LTGRSVEF 62
Query: 147 IEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSA 206
E DI D L +LF +F V+H A V ++Q P Y N+ G + LLE K A
Sbjct: 63 EEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMK-A 121
Query: 207 NPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAH-------TYNHI 259
+ ++V++SS++VYG + +P EA T + Y +K EE+ T+N +
Sbjct: 122 HGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNAV 181
Query: 260 YGLSITGLRFFTVYG----------PWGRPD--MAYFSFTRNILQGKPITVYRGKNHVDL 307
LR+F G P G P+ M Y S + G+ + N D
Sbjct: 182 L------LRYFNPTGAHASGCIGEDPQGIPNNLMPYVS---QVAIGRREALNVFGNDYDT 232
Query: 308 -----ARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKA 362
RD+ ++ D+ KG + +L RI+NLG + +V ++V +E+ K
Sbjct: 233 EDGTGVRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKI 292
Query: 363 KKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRW 407
V+ GDV +AN S AQ+E G+ L + RW
Sbjct: 293 PYKVVARR-EGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRW 336
>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
pdb|1HZJ|B Chain B, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
Length = 348
Score = 109 bits (273), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 99/339 (29%), Positives = 154/339 (45%), Gaps = 31/339 (9%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYD------PSLKKARKALLNNHGVFV 146
VLVTG AG++G+H L L + G V +DNF+N + SL++ ++ L V
Sbjct: 5 VLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQE--LTGRSVEF 62
Query: 147 IEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSA 206
E DI D L +LF +F V+H A V ++Q P Y N+ G + LLE K A
Sbjct: 63 EEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMK-A 121
Query: 207 NPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHI-YGLSIT 265
+ ++V++SS++VYG + +P EA T + Y +K EE+ ++
Sbjct: 122 HGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNVV 181
Query: 266 GLRFFTVYG----------PWGRPD--MAYFSFTRNILQGKPITVYRGKNHVDL-----A 308
LR+F G P G P+ M Y S + G+ + N D
Sbjct: 182 LLRYFNPTGAHASGCIGEDPQGIPNNLMPYVS---QVAIGRREALNVFGNDYDTEDGTGV 238
Query: 309 RDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIE 368
RD+ ++ D+ KG + +L RI+NLG + +V ++V +E+ K V+
Sbjct: 239 RDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVA 298
Query: 369 MPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRW 407
GDV +AN S AQ+E G+ L + RW
Sbjct: 299 RR-EGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRW 336
>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3K|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
Length = 348
Score = 108 bits (270), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 98/339 (28%), Positives = 154/339 (45%), Gaps = 31/339 (9%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYD------PSLKKARKALLNNHGVFV 146
VLVTG AG++G+H L L + G V +DNF+N + SL++ ++ L V
Sbjct: 5 VLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQE--LTGRSVEF 62
Query: 147 IEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSA 206
E DI D L +LF +F V+H A + ++Q P Y N+ G + LLE K A
Sbjct: 63 EEMDILDQGALQRLFKKYSFMAVIHFAGLKAMGESVQKPLDYYRVNLTGTIQLLEIMK-A 121
Query: 207 NPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHI-YGLSIT 265
+ ++V++SS++VYG + +P EA T + Y +K EE+ ++
Sbjct: 122 HGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNVV 181
Query: 266 GLRFFTVYG----------PWGRPD--MAYFSFTRNILQGKPITVYRGKNHVDL-----A 308
LR+F G P G P+ M Y S + G+ + N D
Sbjct: 182 LLRYFNPTGAHASGCIGEDPQGIPNNLMPYVS---QVAIGRREALNVFGNDYDTEDGTGV 238
Query: 309 RDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIE 368
RD+ ++ D+ KG + +L RI+NLG + +V ++V +E+ K V+
Sbjct: 239 RDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVA 298
Query: 369 MPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRW 407
GDV +AN S AQ+E G+ L + RW
Sbjct: 299 RR-EGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRW 336
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 95/327 (29%), Positives = 162/327 (49%), Gaps = 26/327 (7%)
Query: 91 MSVLVTGAAGFVGTH-VSLALKKRGD-GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIE 148
M +LVTG GF+G++ + L+K D V+ +D +P+ K L ++ ++
Sbjct: 4 MKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPA---NLKDLEDDPRYTFVK 60
Query: 149 GDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANP 208
GD+ D +L+ +L V V+HLAA++ V ++ +P ++HSN+ G TLLE+ + NP
Sbjct: 61 GDVADYELVKELVRKV--DGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENP 118
Query: 209 QPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLR 268
+ V S+ VYG F+E DR P+S Y+ATK A + + + Y L+ + R
Sbjct: 119 EVRFVHVSTDEVYGDILKGSFTENDRL-MPSSPYSATKAASDMLVLGWTRTYNLNASITR 177
Query: 269 FFTVYGPWGRPDMAYFSFTRNILQGKPITVY-RGKNHVDLARDFTYIDDIVKGCLGSLDT 327
YGP+ P+ G I +Y GKN RD+ Y++D V+ L
Sbjct: 178 CTNNYGPYQFPEKLIPKTIIRASLGLKIPIYGTGKN----VRDWLYVEDHVRAI--ELVL 231
Query: 328 SAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAK-KNVIEM----PGNGDVPFTHANI 382
G + I+N+ T ++V I+ L++ K + +IE+ PG+ D+ ++ +
Sbjct: 232 LKGES-REIYNISAGEEKTNLEVVKII---LRLMGKGEELIELVEDRPGH-DLRYS-LDS 285
Query: 383 SSAQKEFGYRPTTDLQTGLKKFVRWYL 409
++ +RP G+KK + WYL
Sbjct: 286 WKITRDLKWRPKYTFDEGIKKTIDWYL 312
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase)
From Streptomyces Venezuelae With Nad And Tyd Bound
Length = 337
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 93/333 (27%), Positives = 156/333 (46%), Gaps = 25/333 (7%)
Query: 91 MSVLVTGAAGFVGTHVSLAL------KKRGDGVVGLDNFNNYYDPSLKKARKALLN-NHG 143
M +LVTG AGF+G+H L D V+ LD+ + +A A ++ +
Sbjct: 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTY----AGNRANLAPVDADPR 56
Query: 144 VFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEAC 203
+ + GDI DA LLA+ V ++H AA++ V ++ + +N+ G TLL+ C
Sbjct: 57 LRFVHGDIRDAGLLARELRGV--DAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQ-C 113
Query: 204 KSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLS 263
+V S+ VYG ++ ++E+ +P S YAA+K + +A Y+ YGL
Sbjct: 114 AVDAGVGRVVHVSTDEVYGSIDSGSWTESSPL-EPNSPYAASKAGSDLVARAYHRTYGLD 172
Query: 264 ITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLG 323
+ R YGP+ P+ F N+L G + +Y +V R++ + DD +G
Sbjct: 173 VRITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLYGDGANV---REWVHTDDHCRGIAL 229
Query: 324 SLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVK--AKKNVIEMPGNGDVPFTHAN 381
L AG I+++G +T +L IL L + + V + G+ D+ ++ +
Sbjct: 230 VL---AGGRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKGH-DLRYS-LD 284
Query: 382 ISSAQKEFGYRPTTDLQTGLKKFVRWYLSYYGY 414
++E GYRP GL + VRWY G+
Sbjct: 285 GGKIERELGYRPQVSFADGLARTVRWYRENRGW 317
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 93/333 (27%), Positives = 157/333 (47%), Gaps = 25/333 (7%)
Query: 91 MSVLVTGAAGFVGTHVSLAL------KKRGDGVVGLDNFNNYYDPSLKKARKALLN-NHG 143
M +LVTG AGF+G+H L D V+ LD+ + +A A ++ +
Sbjct: 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTY----AGNRANLAPVDADPR 56
Query: 144 VFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEAC 203
+ + GDI DA LLA+ V ++H AA++ V ++ + +N+ G TLL+ C
Sbjct: 57 LRFVHGDIRDAGLLARELRGV--DAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQ-C 113
Query: 204 KSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLS 263
+V S++ VYG ++ ++E+ +P S YAA+K + +A Y+ YGL
Sbjct: 114 AVDAGVGRVVHVSTNQVYGSIDSGSWTESSPL-EPNSPYAASKAGSDLVARAYHRTYGLD 172
Query: 264 ITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLG 323
+ R YGP+ P+ F N+L G + +Y +V R++ + DD +G
Sbjct: 173 VRITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLYGDGANV---REWVHTDDHCRGIAL 229
Query: 324 SLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVK--AKKNVIEMPGNGDVPFTHAN 381
L AG I+++G +T +L IL L + + V + G+ D+ ++ +
Sbjct: 230 VL---AGGRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKGH-DLRYS-LD 284
Query: 382 ISSAQKEFGYRPTTDLQTGLKKFVRWYLSYYGY 414
++E GYRP GL + VRWY G+
Sbjct: 285 GGKIERELGYRPQVSFADGLARTVRWYRENRGW 317
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 102 bits (253), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 93/336 (27%), Positives = 148/336 (44%), Gaps = 27/336 (8%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGD 150
M VLVTG +G++G+H + L + G V+ LDN N L + L H FV EGD
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIER-LGGKHPTFV-EGD 58
Query: 151 INDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQP 210
I + L+ ++ A V+H A V ++Q P Y +N+ G + L+ A ++AN +
Sbjct: 59 IRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK- 117
Query: 211 SIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIY-GLSITGLRF 269
+ +++SS++VYG N +P+ E+ T P S Y +K E+I SI LR+
Sbjct: 118 NFIFSSSATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRY 177
Query: 270 FTVYG----------PWGRPD--MAYFSFT----RNILQ--GKPITVYRGKNHVDLARDF 311
F G P G P+ M Y + R+ L G G RD+
Sbjct: 178 FNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTG----VRDY 233
Query: 312 TYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPG 371
++ D+ G + +++ A I+NLG +V +VN + +
Sbjct: 234 IHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPR-R 292
Query: 372 NGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRW 407
GD+P A+ S A +E +R T L + W
Sbjct: 293 EGDLPACWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-glucose
4- Epimerase Complex With Nad
Length = 311
Score = 102 bits (253), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 93/320 (29%), Positives = 142/320 (44%), Gaps = 27/320 (8%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGD 150
M VLVTG AGF+G+H+ L RG V LDN ++ K GV D
Sbjct: 1 MRVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRENVPK---------GVPFFRVD 51
Query: 151 INDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQP 210
+ D + + + F THV H AAQA V+ ++++P N+ G + LLEAC+ +
Sbjct: 52 LRDKEGVERAFREFRPTHVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVEK 111
Query: 211 SIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFF 270
+ ++ ++YG +E +P S YAA+K A E Y YGL LR+
Sbjct: 112 LVFASTGGAIYGEVPEGERAEETWPPRPKSPYAASKAAFEHYLSVYGQSYGLKWVSLRYG 171
Query: 271 TVYGPWGRPD---MAYFSFTRNILQGKPITVYRGKNHVD--LARDFTYIDDIVKGCLGSL 325
VYGP P F +L+G P+T+Y K D RD+ Y+ D+ + +L
Sbjct: 172 NVYGPRQDPHGEAGVVAIFAERVLKGLPVTLYARKTPGDEGCVRDYVYVGDVAEAHALAL 231
Query: 326 DTSAGPAPYRIFNLGNTSPVTVPK-LVNILERHLKVKAKKNVIEMPGNGDVPFTHANISS 384
+ G I+N+G T + L+ + E K + PG+ ++ S
Sbjct: 232 FSLEG-----IYNVGTGEGHTTREVLMAVAEAAGKAPEVQPAPPRPGD-----LERSVLS 281
Query: 385 AQK--EFGYRPTTDLQTGLK 402
K G+RP Q G++
Sbjct: 282 PLKLMAHGWRPKVGFQEGIR 301
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 93/336 (27%), Positives = 148/336 (44%), Gaps = 27/336 (8%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGD 150
M VLVTG +G++G+H + L + G V+ LDN N L + L H FV EGD
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIER-LGGKHPTFV-EGD 58
Query: 151 INDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQP 210
I + L+ ++ A V+H A V ++Q P Y +N+ G + L+ A ++AN +
Sbjct: 59 IRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK- 117
Query: 211 SIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIY-GLSITGLRF 269
+ +++SS++VYG N +P+ E+ T P S Y +K E+I SI LR+
Sbjct: 118 NFIFSSSATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRY 177
Query: 270 FTVYG----------PWGRPD--MAYFSFT----RNILQ--GKPITVYRGKNHVDLARDF 311
F G P G P+ M Y + R+ L G G RD+
Sbjct: 178 FNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTG----VRDY 233
Query: 312 TYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPG 371
++ D+ G + +++ A I+NLG +V +VN + +
Sbjct: 234 IHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPR-R 292
Query: 372 NGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRW 407
GD+P A+ S A +E +R T L + W
Sbjct: 293 EGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 92/336 (27%), Positives = 148/336 (44%), Gaps = 27/336 (8%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGD 150
M VLVTG +G++G+H + L + G V+ LDN N L + L H FV EGD
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIER-LGGKHPTFV-EGD 58
Query: 151 INDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQP 210
I + L+ ++ A V+H A V ++Q P Y +N+ G + L+ A ++AN +
Sbjct: 59 IRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK- 117
Query: 211 SIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIY-GLSITGLRF 269
+ +++S+++VYG N +P+ E+ T P S Y +K E+I SI LR+
Sbjct: 118 NFIFSSTATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRY 177
Query: 270 FTVYG----------PWGRPD--MAYFSFT----RNILQ--GKPITVYRGKNHVDLARDF 311
F G P G P+ M Y + R+ L G G RD+
Sbjct: 178 FNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTG----VRDY 233
Query: 312 TYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPG 371
++ D+ G + +++ A I+NLG +V +VN + +
Sbjct: 234 IHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPR-R 292
Query: 372 NGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRW 407
GD+P A+ S A +E +R T L + W
Sbjct: 293 EGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 92/336 (27%), Positives = 148/336 (44%), Gaps = 27/336 (8%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGD 150
M VLVTG +G++G+H + L + G V+ LDN N L + L H FV EGD
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIER-LGGKHPTFV-EGD 58
Query: 151 INDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQP 210
I + L+ ++ A V+H A V ++Q P Y +N+ G + L+ A ++AN +
Sbjct: 59 IRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK- 117
Query: 211 SIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIY-GLSITGLRF 269
+ +++S+++VYG N +P+ E+ T P S Y +K E+I SI LR+
Sbjct: 118 NFIFSSAATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRY 177
Query: 270 FTVYG----------PWGRPD--MAYFSFT----RNILQ--GKPITVYRGKNHVDLARDF 311
F G P G P+ M Y + R+ L G G RD+
Sbjct: 178 FNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTG----VRDY 233
Query: 312 TYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPG 371
++ D+ G + +++ A I+NLG +V +VN + +
Sbjct: 234 IHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPR-R 292
Query: 372 NGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRW 407
GD+P A+ S A +E +R T L + W
Sbjct: 293 EGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 92/336 (27%), Positives = 147/336 (43%), Gaps = 27/336 (8%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGD 150
M VLVTG +G++G+H + L + G V+ LDN N L + L H FV EGD
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIER-LGGKHPTFV-EGD 58
Query: 151 INDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQP 210
I + L+ ++ A V+H A V ++Q P Y +N+ G + L+ A ++AN +
Sbjct: 59 IRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK- 117
Query: 211 SIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIY-GLSITGLRF 269
+ +++SS++VYG +P+ E+ T P S Y +K E+I SI LR+
Sbjct: 118 NFIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRY 177
Query: 270 FTVYG----------PWGRPD--MAYFSFT----RNILQ--GKPITVYRGKNHVDLARDF 311
F G P G P+ M Y + R+ L G G RD+
Sbjct: 178 FNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTG----VRDY 233
Query: 312 TYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPG 371
++ D+ G + +++ A I+NLG +V +VN + +
Sbjct: 234 IHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPR-R 292
Query: 372 NGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRW 407
GD+P A+ S A +E +R T L + W
Sbjct: 293 EGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 84/319 (26%), Positives = 142/319 (44%), Gaps = 24/319 (7%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGD 150
M ++VTG AGF+G+H+ L + G VV +DN L R+ +N + D
Sbjct: 1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDN--------LSSGRREFVNPSAELHVR-D 51
Query: 151 INDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQP 210
+ D A + V F H AA VR + P + + N+ +LE + +
Sbjct: 52 LKDYSWGAGIKGDVVF----HFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVR- 106
Query: 211 SIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFF 270
++V+ASSS+VYG + +P E + +P S+Y A K AGE + TY ++G+ +R+
Sbjct: 107 TVVFASSSTVYGDADVIPTPE-EEPYKPISVYGAAKAAGEVMCATYARLFGVRCLAVRYA 165
Query: 271 TVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDT-SA 329
V GP R + Y F + + + G + + Y+ D V+ L +
Sbjct: 166 NVVGPRLRHGVIY-DFIMKLRRNPNVLEVLGDG--TQRKSYLYVRDAVEATLAAWKKFEE 222
Query: 330 GPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGN-----GDVPFTHANISS 384
AP+ N+GN V V + I+ L ++ + ++ + GDV + ++
Sbjct: 223 MDAPFLALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTPDGRGWPGDVKYMTLAVTK 282
Query: 385 AQKEFGYRPTTDLQTGLKK 403
K G+RPT +KK
Sbjct: 283 LMKLTGWRPTMTSAEAVKK 301
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 92/336 (27%), Positives = 147/336 (43%), Gaps = 27/336 (8%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGD 150
M VLVTG +G++G+H + L + G V+ LDN N L + L H FV EGD
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIER-LGGKHPTFV-EGD 58
Query: 151 INDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQP 210
I + L+ ++ A V+H A V ++Q P Y +N+ G + L+ A ++AN +
Sbjct: 59 IRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK- 117
Query: 211 SIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIY-GLSITGLRF 269
+ +++S ++VYG N +P+ E+ T P S Y +K E+I SI LR+
Sbjct: 118 NFIFSSVATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRY 177
Query: 270 FTVYG----------PWGRPD--MAYFSFT----RNILQ--GKPITVYRGKNHVDLARDF 311
F G P G P+ M Y + R+ L G G RD+
Sbjct: 178 FNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTG----VRDY 233
Query: 312 TYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPG 371
++ D+ G + +++ A I+NLG +V +VN + +
Sbjct: 234 IHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPR-R 292
Query: 372 NGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRW 407
GD+P A+ S A +E +R T L + W
Sbjct: 293 EGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Galactose
Length = 338
Score = 98.6 bits (244), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 91/336 (27%), Positives = 148/336 (44%), Gaps = 27/336 (8%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGD 150
M VLVTG +G++G+H + L + G V+ LDN N L + L H FV EGD
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIER-LGGKHPTFV-EGD 58
Query: 151 INDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQP 210
I + L+ ++ A V+H A V ++Q P Y +N+ G + L+ A ++AN +
Sbjct: 59 IRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK- 117
Query: 211 SIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIY-GLSITGLRF 269
+ +++S+++VYG N +P+ E+ T P S + +K E+I SI LR+
Sbjct: 118 NFIFSSAATVYGDNPKIPYVESFPTGTPQSPFGKSKLMVEQILTDLQKAQPDWSIALLRY 177
Query: 270 FTVYG----------PWGRPD--MAYFSFT----RNILQ--GKPITVYRGKNHVDLARDF 311
F G P G P+ M Y + R+ L G G RD+
Sbjct: 178 FNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTG----VRDY 233
Query: 312 TYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPG 371
++ D+ G + +++ A I+NLG +V +VN + +
Sbjct: 234 IHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPR-R 292
Query: 372 NGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRW 407
GD+P A+ S A +E +R T L + W
Sbjct: 293 EGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 91/336 (27%), Positives = 147/336 (43%), Gaps = 27/336 (8%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGD 150
M VLVTG +G++G+H + L + G V+ LDN N L + L H FV EGD
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIER-LGGKHPTFV-EGD 58
Query: 151 INDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQP 210
I + L+ ++ A V+H A V ++Q P Y +N+ G + L+ A ++AN +
Sbjct: 59 IRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK- 117
Query: 211 SIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIY-GLSITGLRF 269
+ +++S+++VYG +P+ E+ T P S Y +K E+I SI LR+
Sbjct: 118 NFIFSSAATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRY 177
Query: 270 FTVYG----------PWGRPD--MAYFSFT----RNILQ--GKPITVYRGKNHVDLARDF 311
F G P G P+ M Y + R+ L G G RD+
Sbjct: 178 FNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTG----VRDY 233
Query: 312 TYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPG 371
++ D+ G + +++ A I+NLG +V +VN + +
Sbjct: 234 IHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPR-R 292
Query: 372 NGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRW 407
GD+P A+ S A +E +R T L + W
Sbjct: 293 EGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 91/336 (27%), Positives = 147/336 (43%), Gaps = 27/336 (8%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGD 150
M VLVTG +G++G+H + L + G V+ LDN N L + L H FV EGD
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIER-LGGKHPTFV-EGD 58
Query: 151 INDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQP 210
I + L+ ++ A V+H A V ++Q P Y +N+ G + L+ A ++AN +
Sbjct: 59 IRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK- 117
Query: 211 SIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIY-GLSITGLRF 269
+ +++SS++VYG +P+ E+ T P S + +K E+I SI LR+
Sbjct: 118 NFIFSSSATVYGDQPKIPYVESFPTGTPQSPFGKSKLMVEQILTDLQKAQPDWSIALLRY 177
Query: 270 FTVYG----------PWGRPD--MAYFSFT----RNILQ--GKPITVYRGKNHVDLARDF 311
F G P G P+ M Y + R+ L G G RD+
Sbjct: 178 FNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTG----VRDY 233
Query: 312 TYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPG 371
++ D+ G + +++ A I+NLG +V +VN + +
Sbjct: 234 IHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPR-R 292
Query: 372 NGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRW 407
GD+P A+ S A +E +R T L + W
Sbjct: 293 EGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Glucose
Length = 338
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 90/336 (26%), Positives = 147/336 (43%), Gaps = 27/336 (8%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGD 150
M VLVTG +G++G+H + L + G V+ LDN N L + L H FV EGD
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIER-LGGKHPTFV-EGD 58
Query: 151 INDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQP 210
I + L+ ++ A V+H A V ++Q P Y +N+ G + L+ A ++AN +
Sbjct: 59 IRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK- 117
Query: 211 SIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIY-GLSITGLRF 269
+ +++S+++VYG +P+ E+ T P S + +K E+I SI LR+
Sbjct: 118 NFIFSSAATVYGDQPKIPYVESFPTGTPQSPFGKSKLMVEQILTDLQKAQPDWSIALLRY 177
Query: 270 FTVYG----------PWGRPD--MAYFSFT----RNILQ--GKPITVYRGKNHVDLARDF 311
F G P G P+ M Y + R+ L G G RD+
Sbjct: 178 FNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTG----VRDY 233
Query: 312 TYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPG 371
++ D+ G + +++ A I+NLG +V +VN + +
Sbjct: 234 IHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPR-R 292
Query: 372 NGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRW 407
GD+P A+ S A +E +R T L + W
Sbjct: 293 EGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 81/319 (25%), Positives = 139/319 (43%), Gaps = 28/319 (8%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGD 150
M ++VTG AGF+G+H+ L + G VV +D S + + L + I+GD
Sbjct: 1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDIVQRDTGGSAELHVRDLKDYSWGAGIKGD 60
Query: 151 INDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQP 210
+ V H AA VR + P + + N+ +LE + +
Sbjct: 61 V-----------------VFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVR- 102
Query: 211 SIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFF 270
++V+ASSS+VYG + +P E + +P S+Y A K AGE + TY ++G+ +R+
Sbjct: 103 TVVFASSSTVYGDADVIPTPE-EEPYKPISVYGAAKAAGEVMCATYARLFGVRCLAVRYA 161
Query: 271 TVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDT-SA 329
V GP R + Y F + + + G + + Y+ D V+ L +
Sbjct: 162 NVVGPRLRHGVIY-DFIMKLRRNPNVLEVLGDGT--QRKSYLYVRDAVEATLAAWKKFEE 218
Query: 330 GPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGN-----GDVPFTHANISS 384
AP+ N+GN V V + I+ L ++ + ++ + GDV + ++
Sbjct: 219 MDAPFLALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTPDGRGWPGDVKYMTLAVTK 278
Query: 385 AQKEFGYRPTTDLQTGLKK 403
K G+RPT +KK
Sbjct: 279 LMKLTGWRPTMTSAEAVKK 297
>pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|C Chain C, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|D Chain D, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1KEU|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEU|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEW|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
pdb|1KEW|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
Length = 361
Score = 91.7 bits (226), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 90/357 (25%), Positives = 151/357 (42%), Gaps = 58/357 (16%)
Query: 91 MSVLVTGAAGFVGTHV-SLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEG 149
M +L+TG AGF+G+ V +K D VV +D Y +L+ +N F
Sbjct: 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLT--YAGNLESLSDISESNRYNFE-HA 57
Query: 150 DINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQ 209
DI D+ + ++F+ VMHLAA++ V ++ P +++ +NI G LLE +
Sbjct: 58 DICDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARK---- 113
Query: 210 PSIVWA---------------SSSSVYG------LNEN---VPFSEADRTDQPASLYAAT 245
W+ S+ VYG EN +P P+S Y+A+
Sbjct: 114 ---YWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSAS 170
Query: 246 KKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHV 305
K + + + + YGL YGP+ P+ N L+GKP+ +Y GK
Sbjct: 171 KASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIY-GKG-- 227
Query: 306 DLARDFTYIDD--------IVKGCLGSLDTSAGPAPYR----IFNLGNTSPVTVPKLVNI 353
D RD+ Y++D + +G G G + +F + + VPK +
Sbjct: 228 DQIRDWLYVEDHARALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSY 287
Query: 354 LERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLS 410
E+ V + PG+ D + + +E G++P ++G++K V WYL+
Sbjct: 288 REQITYVADR------PGH-DRRYA-IDAGKISRELGWKPLETFESGIRKTVEWYLA 336
>pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
pdb|3VPS|B Chain B, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
Length = 321
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 86/321 (26%), Positives = 141/321 (43%), Gaps = 29/321 (9%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSL-KKARKALLNNHGVFVIEGDI 151
+L+TG AGF+G H++ AL G+ V LD+ P + + L + + E D+
Sbjct: 10 ILITGGAGFIGGHLARALVASGEEVTVLDDLR--VPPMIPPEGTGKFLEKPVLELEERDL 67
Query: 152 NDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPS 211
+D +L V HLA+ V + + P Y+ N+ LL C S P
Sbjct: 68 SDVRL------------VYHLASHKSVPRSFKQPLDYL-DNVDSGRHLLALCTSVG-VPK 113
Query: 212 IVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGL-RFF 270
+V S+ VYG + +P E D P S YAA+K E +A + G+ RFF
Sbjct: 114 VVVGSTCEVYGQADTLPTPE-DSPLSPRSPYAASKVGLEMVAGAHQRASVAPEVGIVRFF 172
Query: 271 TVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAG 330
VYGP RPD N+L + V + + RDFTYI D+V + +
Sbjct: 173 NVYGPGERPDALVPRLCANLLTRNELPV---EGDGEQRRDFTYITDVVDKLVA---LANR 226
Query: 331 PAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFG 390
P P + N G+ ++V ++ IL+ A + + P ++ A+ + ++ G
Sbjct: 227 PLPS-VVNFGSGQSLSVNDVIRILQ--ATSPAAEVARKQPRPNEITEFRADTALQTRQIG 283
Query: 391 YRP-TTDLQTGLKKFVRWYLS 410
R ++ G++ + W+ S
Sbjct: 284 ERSGGIGIEEGIRLTLEWWQS 304
>pdb|4EGB|A Chain A, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|B Chain B, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|C Chain C, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|D Chain D, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|E Chain E, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|F Chain F, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|G Chain G, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|H Chain H, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
Length = 346
Score = 88.2 bits (217), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 85/336 (25%), Positives = 158/336 (47%), Gaps = 36/336 (10%)
Query: 87 RSGGMSVLVTGAAGFVGTH-VSLALKK-RGDGVVGLDNFNNYYDPSLKKARKALLNNHGV 144
+S ++LVTG AGF+G++ V L+ ++ D Y +L K++ ++
Sbjct: 21 QSNAXNILVTGGAGFIGSNFVHYXLQSYETYKIINFDALT--YSGNLNNV-KSIQDHPNY 77
Query: 145 FVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACK 204
+ ++G+I + +LL + +++ AA++ V +++NP + +N+ G VTLLE K
Sbjct: 78 YFVKGEIQNGELLEHVIKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVK 137
Query: 205 SANPQPSIVWASSSSVYG-LNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLS 263
P +V S+ VYG L + F+E + P S Y+++K + + IA Y Y L
Sbjct: 138 KY-PHIKLVQVSTDEVYGSLGKTGRFTE-ETPLAPNSPYSSSKASADXIALAYYKTYQLP 195
Query: 264 ITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDD------- 316
+ R YGP+ P+ N L+GK + +Y +V RD+ ++ D
Sbjct: 196 VIVTRCSNNYGPYQYPEKLIPLXVTNALEGKKLPLYGDGLNV---RDWLHVTDHCSAIDV 252
Query: 317 -IVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKV--KAKKNVIEMPGNG 373
+ KG +G ++N+G + T V ++E+ + + K KK++ +
Sbjct: 253 VLHKGRVG-----------EVYNIGGNNEKTN---VEVVEQIITLLGKTKKDIEYVTDRL 298
Query: 374 DVPFTHA-NISSAQKEFGYRPTTDLQTGLKKFVRWY 408
+A N + EF + P + GL++ V+WY
Sbjct: 299 GHDRRYAINAEKXKNEFDWEPKYTFEQGLQETVQWY 334
>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
pdb|3EHE|B Chain B, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
Length = 313
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 84/318 (26%), Positives = 139/318 (43%), Gaps = 28/318 (8%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDI- 151
++VTG AGF+G+HV L + + VV +DN ++ + + +A + +++ D+
Sbjct: 4 IVVTGGAGFIGSHVVDKLSESNEIVV-IDNLSSGNEEFVNEAAR---------LVKADLA 53
Query: 152 -NDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQP 210
+D K K V H+AA VR +NP +N+ LLEA + A
Sbjct: 54 ADDIKDYLK-----GAEEVWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVS- 107
Query: 211 SIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFF 270
IV+ S+S+VYG + +P E D P SLY A+K A E + +Y H + + RF
Sbjct: 108 RIVFTSTSTVYGEAKVIPTPE-DYPTHPISLYGASKLACEALIESYCHTFDMQAWIYRFA 166
Query: 271 TVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAG 330
V G + Y F + + G + + + YI D V L L G
Sbjct: 167 NVIGRRSTHGVIY-DFIMKLKRNPEELEILGNGEQN--KSYIYISDCVDAMLFGL---RG 220
Query: 331 PAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVI--EMPGNGDVPFTHANISSAQKE 388
IFN+G+ + V ++ I+ L + + + GDVP +I K
Sbjct: 221 DERVNIFNIGSEDQIKVKRIAEIVCEELGLSPRFRFTGGDRGWKGDVPVMLLSIEKL-KR 279
Query: 389 FGYRPTTDLQTGLKKFVR 406
G++P + + ++ VR
Sbjct: 280 LGWKPRYNSEEAVRMAVR 297
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 83/336 (24%), Positives = 143/336 (42%), Gaps = 36/336 (10%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIN 152
+L+TG AGFVG+H++ L G V +DNF K+ + + + +I D+
Sbjct: 8 ILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFT----GRKRNVEHWIGHENFELINHDV- 62
Query: 153 DAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSI 212
+ L+ + + HLA+ A M NP + +N G + +L K + +
Sbjct: 63 ----VEPLY--IEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGAR--L 114
Query: 213 VWASSSSVYGLNENVPFSEA----DRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLR 268
+ AS+S VYG E P SE P + Y K+ E + + Y G+ + R
Sbjct: 115 LLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVAR 174
Query: 269 FFTVYGPW-----GRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLG 323
F +GP GR +F LQG+P+TVY + R F Y+ D+V G +
Sbjct: 175 IFNTFGPRMHMNDGR---VVSNFILQALQGEPLTVYGSGSQ---TRAFQYVSDLVNGLVA 228
Query: 324 SLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANIS 383
++++ NLGN T+ + +++ + ++ + D +I
Sbjct: 229 LMNSNVSSP----VNLGNPEEHTILEFAQLIKNLVGSGSEIQFLS-EAQDDPQKRKPDIK 283
Query: 384 SAQKEFGYRPTTDLQTGLKKFVRWY---LSYYGYNR 416
A+ G+ P L+ GL K + ++ L Y N+
Sbjct: 284 KAKLMLGWEPVVPLEEGLNKAIHYFRKELEYQANNQ 319
>pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|B Chain B, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|C Chain C, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|D Chain D, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|E Chain E, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
Length = 362
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 86/327 (26%), Positives = 156/327 (47%), Gaps = 33/327 (10%)
Query: 92 SVLVTGAAGFVGTHVSLALKKR--GDGVVGLDNF--NNYYD---PSLKKARKALLNNHGV 144
++L+TG AGFVG++++ ++ VV LD F N + PS K L+ G
Sbjct: 12 TILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGE 71
Query: 145 FVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACK 204
VI DIN+ L +L + + F ++ H AA + M N + +N + LLE +
Sbjct: 72 -VIAADINNPLDLRRL-EKLHFDYLFHQAAVSDT--TMLNQELVMKTNYQAFLNLLEIAR 127
Query: 205 SANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEE--IAHTYNHIYGL 262
S + +++ASS+ VYG N P + + + P ++Y +K +E ++H+ +++
Sbjct: 128 SK--KAKVIYASSAGVYG-NTKAP-NVVGKNESPENVYGFSKLCMDEFVLSHSNDNVQ-- 181
Query: 263 SITGLRFFTVYGPWGRPDMAYFSFTRNILQG----KPITVYRGKNHVDLARDFTYIDDIV 318
GLR+F VYGP S + G K + ++ + RDF YI+D++
Sbjct: 182 --VGLRYFNVYGPREFYKEKTASMVLQLALGAMAFKEVKLFEFGEQL---RDFVYIEDVI 236
Query: 319 KGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFT 378
+ + ++ ++N+G + + ++V+IL+ HL K I+ P T
Sbjct: 237 QANVKAMKAQKSG----VYNVGYSQARSYNEIVSILKEHLG-DFKVTYIKNPYAFFQKHT 291
Query: 379 HANISSAQKEFGYRPTTDLQTGLKKFV 405
A+I + Y P DL++G+K ++
Sbjct: 292 QAHIEPTILDLDYTPLYDLESGIKDYL 318
>pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli
pdb|1BXK|B Chain B, Dtdp-Glucose 4,6-Dehydratase From E. Coli
Length = 355
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 86/338 (25%), Positives = 147/338 (43%), Gaps = 28/338 (8%)
Query: 93 VLVTGAAGFVGTH-VSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDI 151
+L+TG AGF+G+ V + + D VV +D Y +L + F + DI
Sbjct: 4 ILITGGAGFIGSALVRYIINETSDAVVVVDKLT--YAGNLMSLAPVAQSERFAFE-KVDI 60
Query: 152 NDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACK------S 205
D LA++F VMHLAA++ V ++ P +++ +NI G TLLEA + +
Sbjct: 61 CDRAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALT 120
Query: 206 ANPQPSIVW--ASSSSVYG-LNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGL 262
+ + + + S+ VYG L+ F P+S Y+A+K + + + + YGL
Sbjct: 121 EDKKSAFRFHHISTDEVYGDLHSTDDFFTETTPYAPSSPYSASKASSDHLVRAWLRTYGL 180
Query: 263 SITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCL 322
YGP+ P+ N L GK + VY + RD+ Y++D +
Sbjct: 181 PTLITNCSNNYGPYHFPEKLIPLMILNALAGKSLPVYGNGQQI---RDWLYVEDHARALY 237
Query: 323 GSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLK------VKAKKNVI----EMPGN 372
T Y I + V + + L L V +++I + PG+
Sbjct: 238 CVATTGKVGETYNIGGHNERKNLDVVETICELLEELAPNKPHGVAHYRDLITFVADRPGH 297
Query: 373 GDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLS 410
D+ + + S +E G P ++G++K V+WYL+
Sbjct: 298 -DLRYA-IDASKIARELGCVPQETFESGMRKTVQWYLA 333
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 84/334 (25%), Positives = 141/334 (42%), Gaps = 30/334 (8%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIN 152
+L+TG AGFVG+H++ L G V +DNF K+ + + + +I D+
Sbjct: 30 ILITGGAGFVGSHLTDKLXXDGHEVTVVDNFFT----GRKRNVEHWIGHENFELINHDV- 84
Query: 153 DAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSI 212
+ L+ + + HLA+ A NP + +N G + L K + +
Sbjct: 85 ----VEPLY--IEVDQIYHLASPASPPNYXYNPIKTLKTNTIGTLNXLGLAKRVGAR--L 136
Query: 213 VWASSSSVYGLNENVPFSEA----DRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLR 268
+ AS+S VYG E P SE P + Y K+ E + Y G+ + R
Sbjct: 137 LLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETXCYAYXKQEGVEVRVAR 196
Query: 269 FFTVYGPWGRPDMAYF--SFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLD 326
F +GP + +F LQG+P+TVY + R F Y+ D+V G + +L
Sbjct: 197 IFNTFGPRXHXNDGRVVSNFILQALQGEPLTVYGSGSQ---TRAFQYVSDLVNGLV-ALX 252
Query: 327 TSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQ 386
S +P NLGN T+ + +++ + ++ + D +I A+
Sbjct: 253 NSNVSSP---VNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSE-AQDDPQKRKPDIKKAK 308
Query: 387 KEFGYRPTTDLQTGLKKFVRWY---LSYYGYNRG 417
G+ P L+ GL K + ++ L Y N+G
Sbjct: 309 LXLGWEPVVPLEEGLNKAIHYFRKELEYQANNQG 342
>pdb|2PK3|A Chain A, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
pdb|2PK3|B Chain B, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
Length = 321
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 114/249 (45%), Gaps = 24/249 (9%)
Query: 79 VRSSAQIHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKAL 138
+R S H G M L+TG AGFVG +++ L ++ V G N P+++
Sbjct: 1 MRGSHHHHHHGSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEAKLPNVE------ 54
Query: 139 LNNHGVFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVT 198
+I DI D++ + K+ + ++ HLAA++ V+ + N +N+ G +
Sbjct: 55 -------MISLDIMDSQRVKKVISDIKPDYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLH 107
Query: 199 LLEACKSANPQPSIVWASSSSVYG--LNENVPFSEADRTDQPASLYAATKKAGEEIAHTY 256
+L+A + +N I+ SS YG L E P SE ++ +P S Y +K + +A Y
Sbjct: 108 VLDAVRDSNLDCRILTIGSSEEYGMILPEESPVSEENQL-RPMSPYGVSKASVGMLARQY 166
Query: 257 NHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNIL-----QGKPITVYRGKNHVDLARDF 311
YG+ I R F GP F + I+ + +PI +++ RDF
Sbjct: 167 VKAYGMDIIHTRTFNHIGPGQSLGFVTQDFAKQIVDIEMEKQEPIIKV---GNLEAVRDF 223
Query: 312 TYIDDIVKG 320
T + DIV+
Sbjct: 224 TDVRDIVQA 232
>pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|B Chain B, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|C Chain C, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|D Chain D, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|E Chain E, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|F Chain F, Crystal Structure Of Udp-Glucose 4-Epimerase
Length = 330
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/274 (24%), Positives = 118/274 (43%), Gaps = 24/274 (8%)
Query: 92 SVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDI 151
S+L+ G AG++G+H L G VV +DN ++ ++ + K GD+
Sbjct: 3 SILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHEDAITEGAK---------FYNGDL 53
Query: 152 NDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPS 211
D L +F VMH AA + V +M+ P Y ++N+ G + LLE
Sbjct: 54 RDKAFLRDVFTQENIEAVMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVD-K 112
Query: 212 IVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFT 271
+++S+++ YG + +E T+ P + Y TK A E++ H Y+ L R+F
Sbjct: 113 FIFSSTAATYGEVDVDLITEETMTN-PTNTYGETKLAIEKMLHWYSQASNLRYKIFRYFN 171
Query: 272 VYG--PWG------RPDMAYFSFTRNILQGKPITVYRGKNHVD-----LARDFTYIDDIV 318
V G P G RP+ + G+ + + + RD+ +++D+V
Sbjct: 172 VAGATPNGIIGEDHRPETHLIPLVLQVALGQREKIMMFGDDYNTPDGTCIRDYIHVEDLV 231
Query: 319 KGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVN 352
L +NLGN + +V ++V+
Sbjct: 232 AAHFLGLKDLQNGGESDFYNLGNGNGFSVKEIVD 265
>pdb|2PZK|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZK|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZL|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZL|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
Length = 330
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 80/332 (24%), Positives = 144/332 (43%), Gaps = 35/332 (10%)
Query: 85 IHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGV 144
+ R M +L+TG AG +G+++ +G ++ +DNF R+ L G+
Sbjct: 15 VPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFAT-------GKREVLPPVAGL 67
Query: 145 FVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVH---SNIAGLVTLLE 201
VIEG + DA LL + FD+ THV+H AA A ++P + +N+ G + + +
Sbjct: 68 SVIEGSVTDAGLLERAFDSFKPTHVVHSAA------AYKDPDDWAEDAATNVQGSINVAK 121
Query: 202 ACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYG 261
A A + ++ ++ YG VP D P + Y +K AGE + +
Sbjct: 122 AASKAGVK-RLLNFQTALCYGRPATVPIP-IDSPTAPFTSYGISKTAGE----AFLMMSD 175
Query: 262 LSITGLRFFTVYGPWGRPDMAYF-SFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKG 320
+ + LR V GP R + +F + + G+ D RDF + D +
Sbjct: 176 VPVVSLRLANVTGP--RLAIGPIPTFYKRLKAGQKCFCS------DTVRDFLDMSDFL-- 225
Query: 321 CLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNV-IEMPGNGDVPFTH 379
+ L G P +FN+ ++ ++ +++ ++ + V + PG DVP
Sbjct: 226 AIADLSLQEG-RPTGVFNVSTGEGHSIKEVFDVVLDYVGATLAEPVPVVAPGADDVPSVV 284
Query: 380 ANISSAQKEFGYRPTTDLQTGLKKFVRWYLSY 411
+ S + EFG++ D + + + WY Y
Sbjct: 285 LDPSKTETEFGWKAKVDFKDTITGQLAWYDKY 316
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
Cerevisiae Complexed With Nad, Udp-Glucose, And
Galactose
Length = 699
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 96/361 (26%), Positives = 150/361 (41%), Gaps = 50/361 (13%)
Query: 82 SAQIH-RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLN 140
+AQ+ S VLVTG AG++G+H + L + G V DN +N S+ AR +L
Sbjct: 2 TAQLQSESTSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSV--ARLEVLT 59
Query: 141 NHGVFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLL 200
H + E D+ D K L K+F V+H A V + Q P Y H+NI G V LL
Sbjct: 60 KHHIPFYEVDLCDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLL 119
Query: 201 EACKSANPQPSIVWASSSSVYG----LNENVPFSEADRTDQPASLYAATKKAGEEIAHTY 256
E + N V++SS++VYG +P E + P + Y TK A E I
Sbjct: 120 ELMQQYNVS-KFVFSSSATVYGDATRFPNMIPIPE-ECPLGPTNPYGHTKYAIENI---L 174
Query: 257 NHIYGLSITG-----LRFFTVYG----------PWGRPDMAYFSFTRNILQGKPITVYRG 301
N +Y LR+F G P G P+ + + G+ +Y
Sbjct: 175 NDLYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGIPN-NLLPYMAQVAVGRREKLYIF 233
Query: 302 KNHVDL-----ARDFTYIDDIVKGCLGSLD----TSAGPAPYRIFNLGNTSPVTVPKLVN 352
+ D RD+ ++ D+ KG + +L + R +NLG+ TV ++ +
Sbjct: 234 GDDYDSRDGTPIRDYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYH 293
Query: 353 ILERHLKVKAKKNVIEMPGN------GDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVR 406
K + I++P GDV A A++E ++ ++ K +
Sbjct: 294 AF-------CKASGIDLPYKVTGRRAGDVLNLTAKPDRAKRELKWQTELQVEDSCKDLWK 346
Query: 407 W 407
W
Sbjct: 347 W 347
>pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KEP|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KER|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KER|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KET|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1KET|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1OC2|A Chain A, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
pdb|1OC2|B Chain B, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
Length = 348
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 92/332 (27%), Positives = 151/332 (45%), Gaps = 30/332 (9%)
Query: 92 SVLVTGAAGFVGTH-VSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGD 150
+++VTG AGF+G++ V D V + + Y K +A+L + V+ GD
Sbjct: 6 NIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTY--AGNKANLEAILGDRVELVV-GD 62
Query: 151 INDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQP 210
I DA+L+ KL A ++H AA++ ++ +P ++H+N G TLLEA + + +
Sbjct: 63 IADAELVDKL--AAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRF 120
Query: 211 SIVWASSSSVYG---LNENVP---------FSEADRTDQPASLYAATKKAGEEIAHTYNH 258
V S+ VYG L E++P F+ A+ P+S Y++TK A + I +
Sbjct: 121 HHV--STDEVYGDLPLREDLPGHGEGPGEKFT-AETNYNPSSPYSSTKAASDLIVKAWVR 177
Query: 259 IYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQG-KPITVYRGKNHVDLARDFTYIDDI 317
+G+ T YGP+ + NIL G KP GKN RD+ + +D
Sbjct: 178 SFGVKATISNCSNNYGPYQHIEKFIPRQITNILAGIKPKLYGEGKN----VRDWIHTNDH 233
Query: 318 VKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPF 377
G L Y I G + V +L ILE+ + K + + D+ +
Sbjct: 234 STGVWAILTKGRMGETYLIGADGEKNNKEVLEL--ILEKMGQPKDAYDHVTDRAGHDLRY 291
Query: 378 THANISSAQKEFGYRPT-TDLQTGLKKFVRWY 408
+ S + E G+ P TD GL++ ++WY
Sbjct: 292 A-IDASKLRDELGWTPQFTDFSEGLEETIQWY 322
>pdb|3ENK|A Chain A, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
pdb|3ENK|B Chain B, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
Length = 341
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 88/338 (26%), Positives = 147/338 (43%), Gaps = 34/338 (10%)
Query: 92 SVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDI 151
++LVTG AG++G+H ++ L G VV DN N ++ + K + E D+
Sbjct: 7 TILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEK--ITGKTPAFHETDV 64
Query: 152 NDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPS 211
+D + LA++FDA T +H AA V ++ P Y +N+ L++LL + +
Sbjct: 65 SDERALARIFDAHPITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVK-R 123
Query: 212 IVWASSSSVYGLNENVPFSEADRTDQPASL---YAATKKAGEEIAHTYNHIY-GLSITGL 267
IV++SS++VYG+ E P E P S Y TK E+I + L
Sbjct: 124 IVFSSSATVYGVPERSPIDET----FPLSATNPYGQTKLMAEQILRDVEAADPSWRVATL 179
Query: 268 RFFTVYG----------PWGRPDMAYFSFTRNILQGK--PITVYRGKNHVDL----ARDF 311
R+F G P G P+ + + GK + V+ G ++ RD+
Sbjct: 180 RYFNPVGAHESGLIGEDPAGIPNN-LMPYVAQVAVGKLEKLRVF-GSDYPTPDGTGVRDY 237
Query: 312 TYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPG 371
++ D+ +G + +LD NLG +V ++V E K + E+
Sbjct: 238 IHVVDLARGHIAALDALERRDASLTVNLGTGRGYSVLEVVRAFE---KASGRAVPYELVA 294
Query: 372 N--GDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRW 407
GDV +AN ++A + G++ DL+ RW
Sbjct: 295 RRPGDVAECYANPAAAAETIGWKAERDLERMCADHWRW 332
>pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active
Site.
pdb|2C5E|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active Site
Length = 379
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 83/333 (24%), Positives = 141/333 (42%), Gaps = 35/333 (10%)
Query: 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVI 147
S + + +TGA GF+ +H++ LK G V+ D N + +F
Sbjct: 27 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEH------------MTEDMFCD 74
Query: 148 EGDINDAKLLAKLFDAV-AFTHVMHLAAQAGVRYAMQNPHSYV-HSNIAGLVTLLEACKS 205
E + D +++ HV +LAA G +Q+ HS + ++N ++EA +
Sbjct: 75 EFHLVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAAR- 133
Query: 206 ANPQPSIVWASSSSVYGL-----NENVPFSEADR-TDQPASLYAATKKAGEEIAHTYNHI 259
N +ASS+ +Y NV E+D +P Y K A EE+ YN
Sbjct: 134 INGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLEKLATEELCKHYNKD 193
Query: 260 YGLSITGLRFFTVYGPWGR----PDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYID 315
+G+ RF +YGP+G + A +F R G R FT+ID
Sbjct: 194 FGIECRIGRFHNIYGPFGTWKGGREAAPAAFCRKAQTSTDRFEMWGDGL--QTRSFTFID 251
Query: 316 DIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVI-EMPGNGD 374
+ V+G L L S P N+G+ V++ ++ ++ L + KK I +PG
Sbjct: 252 ECVEGVL-RLTKSDFREP---VNIGSDEMVSMNEMAEMV---LSFEEKKLPIHHIPGPEG 304
Query: 375 VPFTHANISSAQKEFGYRPTTDLQTGLKKFVRW 407
V +++ + +++ G+ P L+ GL+ W
Sbjct: 305 VRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFW 337
>pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site.
pdb|2C59|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site
Length = 379
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 83/333 (24%), Positives = 141/333 (42%), Gaps = 35/333 (10%)
Query: 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVI 147
S + + +TGA GF+ +H++ LK G V+ D N + +F
Sbjct: 27 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEH------------MTEDMFCD 74
Query: 148 EGDINDAKLLAKLFDAV-AFTHVMHLAAQAGVRYAMQNPHSYV-HSNIAGLVTLLEACKS 205
E + D +++ HV +LAA G +Q+ HS + ++N ++EA +
Sbjct: 75 EFHLVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAAR- 133
Query: 206 ANPQPSIVWASSSSVYGL-----NENVPFSEADR-TDQPASLYAATKKAGEEIAHTYNHI 259
N +ASS+ +Y NV E+D +P Y K A EE+ YN
Sbjct: 134 INGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLEKLATEELCKHYNKD 193
Query: 260 YGLSITGLRFFTVYGPWGR----PDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYID 315
+G+ RF +YGP+G + A +F R G R FT+ID
Sbjct: 194 FGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGL--QTRSFTFID 251
Query: 316 DIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVI-EMPGNGD 374
+ V+G L L S P N+G+ V++ ++ ++ L + KK I +PG
Sbjct: 252 ECVEGVL-RLTKSDFREP---VNIGSDEMVSMNEMAEMV---LSFEEKKLPIHHIPGPEG 304
Query: 375 VPFTHANISSAQKEFGYRPTTDLQTGLKKFVRW 407
V +++ + +++ G+ P L+ GL+ W
Sbjct: 305 VRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFW 337
>pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site.
pdb|2C54|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site
Length = 379
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 82/333 (24%), Positives = 141/333 (42%), Gaps = 35/333 (10%)
Query: 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVI 147
S + + +TGA GF+ +H++ LK G V+ D N + +F
Sbjct: 27 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEH------------MTEDMFCD 74
Query: 148 EGDINDAKLLAKLFDAV-AFTHVMHLAAQAGVRYAMQNPHSYV-HSNIAGLVTLLEACKS 205
E + D +++ HV +LAA G +Q+ HS + ++N ++EA +
Sbjct: 75 EFHLVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAAR- 133
Query: 206 ANPQPSIVWASSSSVYGL-----NENVPFSEADR-TDQPASLYAATKKAGEEIAHTYNHI 259
N +ASS+ +Y NV E+D +P Y + A EE+ YN
Sbjct: 134 INGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLERLATEELCKHYNKD 193
Query: 260 YGLSITGLRFFTVYGPWGR----PDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYID 315
+G+ RF +YGP+G + A +F R G R FT+ID
Sbjct: 194 FGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGL--QTRSFTFID 251
Query: 316 DIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVI-EMPGNGD 374
+ V+G L L S P N+G+ V++ ++ ++ L + KK I +PG
Sbjct: 252 ECVEGVL-RLTKSDFREP---VNIGSDEMVSMNEMAEMV---LSFEEKKLPIHHIPGPEG 304
Query: 375 VPFTHANISSAQKEFGYRPTTDLQTGLKKFVRW 407
V +++ + +++ G+ P L+ GL+ W
Sbjct: 305 VRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFW 337
>pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
pdb|2C5A|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
Length = 379
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 82/333 (24%), Positives = 141/333 (42%), Gaps = 35/333 (10%)
Query: 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVI 147
S + + +TGA GF+ +H++ LK G V+ D N + +F
Sbjct: 27 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEH------------MTEDMFCD 74
Query: 148 EGDINDAKLLAKLFDAV-AFTHVMHLAAQAGVRYAMQNPHSYV-HSNIAGLVTLLEACKS 205
E + D +++ HV +LAA G +Q+ HS + ++N ++EA +
Sbjct: 75 EFHLVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAAR- 133
Query: 206 ANPQPSIVWASSSSVYGL-----NENVPFSEADR-TDQPASLYAATKKAGEEIAHTYNHI 259
N +ASS+ +Y NV E+D +P + K A EE+ YN
Sbjct: 134 INGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNKD 193
Query: 260 YGLSITGLRFFTVYGPWGR----PDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYID 315
+G+ RF +YGP+G + A +F R G R FT+ID
Sbjct: 194 FGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGL--QTRSFTFID 251
Query: 316 DIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVI-EMPGNGD 374
+ V+G L L S P N+G+ V++ ++ ++ L + KK I +PG
Sbjct: 252 ECVEGVL-RLTKSDFREP---VNIGSDEMVSMNEMAEMV---LSFEEKKLPIHHIPGPEG 304
Query: 375 VPFTHANISSAQKEFGYRPTTDLQTGLKKFVRW 407
V +++ + +++ G+ P L+ GL+ W
Sbjct: 305 VRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFW 337
>pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|C Chain C, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
Length = 333
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 79/328 (24%), Positives = 140/328 (42%), Gaps = 42/328 (12%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNH-GVFVIEGDI 151
V +TG G +G+H++ L +RGD VVG+DNF R+ L +H + +EG I
Sbjct: 24 VFITGICGQIGSHIAELLLERGDKVVGIDNF--------ATGRREHLKDHPNLTFVEGSI 75
Query: 152 NDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVH---SNIAGLVTLLEACKSANP 208
D L+ +L + V+H AA + ++P + + +N G +++A K N
Sbjct: 76 ADHALVNQLIGDLQPDAVVHTAA------SYKDPDDWYNDTLTNCVGGSNVVQAAKKNNV 129
Query: 209 QPSIVWASSSSVYGLNENVPFSEADRTDQPA----SLYAATKKAGEEIAHTYNHIYGLSI 264
V+ ++ YG+ P + R D P S YA +K A E+ Y GL
Sbjct: 130 G-RFVYFQTALCYGVK---PIQQPVRLDHPRNPANSSYAISKSANED----YLEYSGLDF 181
Query: 265 TGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGS 324
R V GP F R + +GK V + + RDF ++ D+ + + +
Sbjct: 182 VTFRLANVVGPRNVSGPLPIFFQR-LSEGKKCFVTKAR------RDFVFVKDLARATVRA 234
Query: 325 LDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKA-KKNVIEMPGNGDVPFTHANIS 383
+D A ++ + + V + +L + + + + + + I G D P + S
Sbjct: 235 VDGVGHGA----YHFSSGTDVAIKELYDAVVEAMALPSYPEPEIRELGPDDAPSILLDPS 290
Query: 384 SAQKEFGYRPTTDLQTGLKKFVRWYLSY 411
++FG T L+ + V ++ Y
Sbjct: 291 RTIQDFGKIEFTPLKETVAAAVAYFREY 318
>pdb|1ORR|A Chain A, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|B Chain B, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|C Chain C, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|D Chain D, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
Length = 347
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 92/200 (46%), Gaps = 24/200 (12%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKAL--LNNHGVF-VIEG 149
+L+TG GF+G++++ +G ++ DN S K A L L++ G F + G
Sbjct: 4 LLITGGCGFLGSNLASFALSQGIDLIVFDNL------SRKGATDNLHWLSSLGNFEFVHG 57
Query: 150 DINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQ 209
DI + + +L HLA Q + ++ NP N+ G + LLEA + N
Sbjct: 58 DIRNKNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSN 117
Query: 210 PSIVWASSSSVYGLNENVPFSEADR----TDQPA-----------SLYAATKKAGEEIAH 254
+I+++S++ VYG E ++E + D+P S Y +K A ++
Sbjct: 118 CNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYML 177
Query: 255 TYNHIYGLSITGLRFFTVYG 274
Y I+GL+ R ++YG
Sbjct: 178 DYARIFGLNTVVFRHSSMYG 197
>pdb|3M2P|A Chain A, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|B Chain B, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|C Chain C, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|D Chain D, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|E Chain E, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|F Chain F, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
Length = 311
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 77/314 (24%), Positives = 133/314 (42%), Gaps = 27/314 (8%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGD 150
+ + VTG GF+G +V ++K G+ + L + +N++ V +
Sbjct: 3 LKIAVTGGTGFLGQYVVESIKNDGNTPIIL----------TRSIGNKAINDYEYRVSDYT 52
Query: 151 INDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQP 210
+ D L+ +L D A V+HLAA G Q S H N L +AC N
Sbjct: 53 LED--LINQLNDVDA---VVHLAATRG----SQGKISEFHDNEILTQNLYDACYENNI-S 102
Query: 211 SIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFF 270
+IV+AS+ S Y ++P++E + P Y +K A E I + Y+ GL I LRF
Sbjct: 103 NIVYASTISAYSDETSLPWNEKELP-LPDLXYGVSKLACEHIGNIYSRKKGLCIKNLRFA 161
Query: 271 TVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAG 330
+YG + + F R G+ +T++ N V R+F Y D K + +L
Sbjct: 162 HLYGFNEKNNYXINRFFRQAFHGEQLTLH--ANSV-AKREFLYAKDAAKSVIYALKQEKV 218
Query: 331 PAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFG 390
FN+G+ +T ++ N + K V N + ++ + S A++
Sbjct: 219 SGT---FNIGSGDALTNYEVANTINNAFGNKDNLLVKNPNANEGIHSSYXDSSKAKELLD 275
Query: 391 YRPTTDLQTGLKKF 404
+ + T +++
Sbjct: 276 FSTDYNFATAVEEI 289
>pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+
pdb|2Q1S|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nadh
pdb|2Q1T|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
Length = 377
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 81/344 (23%), Positives = 144/344 (41%), Gaps = 52/344 (15%)
Query: 92 SVLVTGAAGFVGTHVSLALKKRG-DGVVGLDNFNNYYDPSLKKARKALLNNH-GVFVIEG 149
+V+V G AGFVG+++ L + G + V +DN L A K + +H V E
Sbjct: 34 NVMVVGGAGFVGSNLVKRLLELGVNQVHVVDN--------LLSAEKINVPDHPAVRFSET 85
Query: 150 DINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQ 209
I D LLA L D + +V HLA G + ++ +P + +N + L E K
Sbjct: 86 SITDDALLASLQD--EYDYVFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRL 143
Query: 210 PSIVWASSSSVYGLNENVPFSEADRTDQP--------ASLYAATKKAGEEIAHTYNHIYG 261
+V++++ + E F +A T++ S Y+ +K GE + Y+ +
Sbjct: 144 KKVVYSAAGC--SIAEKT-FDDAKATEETDIVSLHNNDSPYSMSKIFGEFYSVYYHKQHQ 200
Query: 262 LSITGLRFFTVYGP--------W-GRPDMAYF----SFTRNILQGKPITVYRGKNHVDLA 308
L RF VYGP W G P + +F L+G P+ + G
Sbjct: 201 LPTVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALKGMPLPLENGGV---AT 257
Query: 309 RDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIE 368
RDF +++D+ G + +A P ++N+ + ++ L + + N E
Sbjct: 258 RDFIFVEDVANGLIAC---AADGTPGGVYNIASGKETSIADLATKIN-----EITGNNTE 309
Query: 369 MPGNGDVPFTHA-----NISSAQKEFGYRPTTDLQTGLKKFVRW 407
+ P+ ++ + A++E G+ + GL+K + W
Sbjct: 310 LDRLPKRPWDNSGKRFGSPEKARRELGFSADVSIDDGLRKTIEW 353
>pdb|1RKX|A Chain A, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|B Chain B, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|C Chain C, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|D Chain D, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
Length = 357
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 81/339 (23%), Positives = 136/339 (40%), Gaps = 28/339 (8%)
Query: 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSL-KKARKALLNNHGVFVIE 148
G V VTG GF G +SL L+ G V G + PSL + AR A G+
Sbjct: 9 GKRVFVTGHTGFKGGWLSLWLQTMGATVKGY-SLTAPTVPSLFETARVA----DGMQSEI 63
Query: 149 GDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANP 208
GDI D L + V H+AAQ VR + P +N+ G V LLEA +
Sbjct: 64 GDIRDQNKLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGG 123
Query: 209 QPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIY-------- 260
++V +S Y E + + Y+ +K E + +Y + +
Sbjct: 124 VKAVVNITSDKCYDNKEWIWGYRENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPANYGQ 183
Query: 261 -GLSITGLRFFTVY--GPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDI 317
G ++ +R V G W D R Q +P+ + R + + R + ++ +
Sbjct: 184 HGTAVATVRAGNVIGGGDWAL-DRIVPDILRAFEQSQPVII-RNPHAI---RPWQHVLEP 238
Query: 318 VKG--CLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNG-- 373
+ G L + G +N G P + NI+E+ +K + ++ GN
Sbjct: 239 LSGYLLLAQKLYTDGAEYAEGWNFGPNDADATP-VKNIVEQMVKYWGEGASWQLDGNAHP 297
Query: 374 -DVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSY 411
+ + + S A+ + G+ P +L T L+ V W+ ++
Sbjct: 298 HEAHYLKLDCSKAKMQLGWHPRWNLNTTLEYIVGWHKNW 336
>pdb|2BLL|A Chain A, Apo-Structure Of The C-Terminal Decarboxylase Domain Of
Arna
Length = 345
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 78/351 (22%), Positives = 136/351 (38%), Gaps = 48/351 (13%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEG 149
M VL+ G GF+G H++ L + V GLD ++ A LN+ +EG
Sbjct: 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSD--------AISRFLNHPHFHFVEG 52
Query: 150 DINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQ 209
DI+ + + V+ L A A +NP + + ++ C +
Sbjct: 53 DISIHSEWIE-YHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYC--VKYR 109
Query: 210 PSIVWASSSSVYGLNENVPFSEADR------TDQPASLYAATKKAGEEIAHTYNHIYGLS 263
I++ S+S VYG+ + F E ++P +Y+ +K+ + + Y GL
Sbjct: 110 KRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQ 169
Query: 264 ITGLRFFTVYGPWGRPD----------MAYFSFTRNILQGKPITVYRGKNHVDLARDFTY 313
T R F GP R D A N+++G PI + G R FT
Sbjct: 170 FTLFRPFNWMGP--RLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQ---KRCFTD 224
Query: 314 IDDIVKGCLGSLDTSAGPAPYRIFNLGN-TSPVTVPKLVNI---------LERHLKVKAK 363
I D ++ ++ + I N+GN + ++ +L + L H A
Sbjct: 225 IRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAG 284
Query: 364 KNVIEM-----PGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYL 409
V+E G DV +I +A + + P D+Q + + + ++L
Sbjct: 285 FRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFL 335
>pdb|3SLG|A Chain A, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|B Chain B, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|C Chain C, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|D Chain D, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|E Chain E, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|F Chain F, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
Length = 372
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 84/360 (23%), Positives = 142/360 (39%), Gaps = 48/360 (13%)
Query: 82 SAQIHRSGGMS---VLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDPSLKKARKA 137
AQ G M VL+ G GF+G H+S + + D V G+D + +K R
Sbjct: 13 EAQTQGPGSMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHER-- 70
Query: 138 LLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLV 197
+ EGDI K + + +A Y Q + A L
Sbjct: 71 ------MHFFEGDITINKEWVEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLP 124
Query: 198 TLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRT------DQPASLYAATKKAGEE 251
+ A K +V+ S+S VYG+ + F ++P +YA +K+ +
Sbjct: 125 IVRSAVKYGK---HLVFPSTSEVYGMCADEQFDPDASALTYGPINKPRWIYACSKQLMDR 181
Query: 252 IAHTYNHIYGLSITGLRFF--------TVYGPWGRPDMAYFSFTRNILQGKPITVYRGKN 303
+ Y + GL+ T R F ++Y P F +I++G+ I++ G +
Sbjct: 182 VIWGYG-MEGLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGENISLVDGGS 240
Query: 304 HVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGN-TSPVTVPKLVN-ILE------ 355
R FTY+DD + + ++ S G A +I+N+GN + +V +L N +LE
Sbjct: 241 Q---KRAFTYVDDGISALMKIIENSNGVATGKIYNIGNPNNNFSVRELANKMLELAAEFP 297
Query: 356 RHLKVKAKKNVIEMP-----GNG--DVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWY 408
+ + ++E GNG DV I + +E G+ P L++ Y
Sbjct: 298 EYADSAKRVKLVETTSGAYYGNGYQDVQNRVPKIENTMQELGWAPQFTFDDALRQIFEAY 357
>pdb|1Z7B|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619e Mutant
Length = 358
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 77/349 (22%), Positives = 135/349 (38%), Gaps = 48/349 (13%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDI 151
VL+ G GF+G H++ L + V GLD ++ A LN+ +EGDI
Sbjct: 16 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSD--------AISRFLNHPHFHFVEGDI 67
Query: 152 NDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPS 211
+ + + V+ L A A +NP + + ++ C +
Sbjct: 68 SIHSEWIE-YHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYC--VKYRKR 124
Query: 212 IVWASSSSVYGLNENVPFSEADR------TDQPASLYAATKKAGEEIAHTYNHIYGLSIT 265
I++ S+S VYG+ + F E ++P +Y+ +K+ + + Y GL T
Sbjct: 125 IIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFT 184
Query: 266 GLRFFTVYGPWGRPD----------MAYFSFTRNILQGKPITVYRGKNHVDLARDFTYID 315
R F GP R D A N+++G PI + G R FT I
Sbjct: 185 LFRPFNWMGP--RLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQ---KRCFTDIR 239
Query: 316 DIVKGCLGSLDTSAGPAPYRIFNLGN-TSPVTVPKLVNI---------LERHLKVKAKKN 365
D ++ ++ + I N+GN + ++ +L + L H A
Sbjct: 240 DGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFR 299
Query: 366 VIEM-----PGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYL 409
V+E G DV +I +A + + P D+Q + + + ++L
Sbjct: 300 VVESSSYYGKGYQDVEHEKPSIRNAHRCLDWEPKIDMQETIDETLDFFL 348
>pdb|1Z75|A Chain A, Crystal Structure Of Arna Dehydrogenase (decarboxylase)
Domain, R619m Mutant
Length = 358
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 77/349 (22%), Positives = 135/349 (38%), Gaps = 48/349 (13%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDI 151
VL+ G GF+G H++ L + V GLD ++ A LN+ +EGDI
Sbjct: 16 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSD--------AISRFLNHPHFHFVEGDI 67
Query: 152 NDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPS 211
+ + + V+ L A A +NP + + ++ C +
Sbjct: 68 SIHSEWIE-YHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYC--VKYRKR 124
Query: 212 IVWASSSSVYGLNENVPFSEADR------TDQPASLYAATKKAGEEIAHTYNHIYGLSIT 265
I++ S+S VYG+ + F E ++P +Y+ +K+ + + Y GL T
Sbjct: 125 IIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFT 184
Query: 266 GLRFFTVYGPWGRPD----------MAYFSFTRNILQGKPITVYRGKNHVDLARDFTYID 315
R F GP R D A N+++G PI + G R FT I
Sbjct: 185 LFRPFNWMGP--RLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQ---KRCFTDIR 239
Query: 316 DIVKGCLGSLDTSAGPAPYRIFNLGN-TSPVTVPKLVNI---------LERHLKVKAKKN 365
D ++ ++ + I N+GN + ++ +L + L H A
Sbjct: 240 DGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFR 299
Query: 366 VIEM-----PGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYL 409
V+E G DV +I +A + + P D+Q + + + ++L
Sbjct: 300 VVESSSYYGKGYQDVEHMKPSIRNAHRCLDWEPKIDMQETIDETLDFFL 348
>pdb|1U9J|A Chain A, Crystal Structure Of E. Coli Arna (Pmri) Decarboxylase
Domain
Length = 358
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 77/349 (22%), Positives = 135/349 (38%), Gaps = 48/349 (13%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDI 151
VL+ G GF+G H++ L + V GLD ++ A LN+ +EGDI
Sbjct: 16 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSD--------AISRFLNHPHFHFVEGDI 67
Query: 152 NDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPS 211
+ + + V+ L A A +NP + + ++ C +
Sbjct: 68 SIHSEWIE-YHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYC--VKYRKR 124
Query: 212 IVWASSSSVYGLNENVPFSEADR------TDQPASLYAATKKAGEEIAHTYNHIYGLSIT 265
I++ S+S VYG+ + F E ++P +Y+ +K+ + + Y GL T
Sbjct: 125 IIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFT 184
Query: 266 GLRFFTVYGPWGRPD----------MAYFSFTRNILQGKPITVYRGKNHVDLARDFTYID 315
R F GP R D A N+++G PI + G R FT I
Sbjct: 185 LFRPFNWMGP--RLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQ---KRCFTDIR 239
Query: 316 DIVKGCLGSLDTSAGPAPYRIFNLGN-TSPVTVPKLVNI---------LERHLKVKAKKN 365
D ++ ++ + I N+GN + ++ +L + L H A
Sbjct: 240 DGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFR 299
Query: 366 VIEM-----PGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYL 409
V+E G DV +I +A + + P D+Q + + + ++L
Sbjct: 300 VVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFL 348
>pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619y Mutant
Length = 358
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 77/349 (22%), Positives = 135/349 (38%), Gaps = 48/349 (13%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDI 151
VL+ G GF+G H++ L + V GLD ++ A LN+ +EGDI
Sbjct: 16 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSD--------AISRFLNHPHFHFVEGDI 67
Query: 152 NDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPS 211
+ + + V+ L A A +NP + + ++ C +
Sbjct: 68 SIHSEWIE-YHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYC--VKYRKR 124
Query: 212 IVWASSSSVYGLNENVPFSEADR------TDQPASLYAATKKAGEEIAHTYNHIYGLSIT 265
I++ S+S VYG+ + F E ++P +Y+ +K+ + + Y GL T
Sbjct: 125 IIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFT 184
Query: 266 GLRFFTVYGPWGRPD----------MAYFSFTRNILQGKPITVYRGKNHVDLARDFTYID 315
R F GP R D A N+++G PI + G R FT I
Sbjct: 185 LFRPFNWMGP--RLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQ---KRCFTDIR 239
Query: 316 DIVKGCLGSLDTSAGPAPYRIFNLGN-TSPVTVPKLVNI---------LERHLKVKAKKN 365
D ++ ++ + I N+GN + ++ +L + L H A
Sbjct: 240 DGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFR 299
Query: 366 VIEM-----PGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYL 409
V+E G DV +I +A + + P D+Q + + + ++L
Sbjct: 300 VVESSSYYGKGYQDVEHYKPSIRNAHRCLDWEPKIDMQETIDETLDFFL 348
>pdb|1Z73|A Chain A, Crystal Structure Of E. Coli Arna Dehydrogenase
(decarboxylase) Domain, S433a Mutant
Length = 358
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 76/349 (21%), Positives = 135/349 (38%), Gaps = 48/349 (13%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDI 151
VL+ G GF+G H++ L + V GLD ++ A LN+ +EGDI
Sbjct: 16 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSD--------AISRFLNHPHFHFVEGDI 67
Query: 152 NDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPS 211
+ + + V+ L A A +NP + + ++ C +
Sbjct: 68 SIHSEWIE-YHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYC--VKYRKR 124
Query: 212 IVWASSSSVYGLNENVPFSEADR------TDQPASLYAATKKAGEEIAHTYNHIYGLSIT 265
I++ S++ VYG+ + F E ++P +Y+ +K+ + + Y GL T
Sbjct: 125 IIFPSTAEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFT 184
Query: 266 GLRFFTVYGPWGRPD----------MAYFSFTRNILQGKPITVYRGKNHVDLARDFTYID 315
R F GP R D A N+++G PI + G R FT I
Sbjct: 185 LFRPFNWMGP--RLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQ---KRCFTDIR 239
Query: 316 DIVKGCLGSLDTSAGPAPYRIFNLGN-TSPVTVPKLVNI---------LERHLKVKAKKN 365
D ++ ++ + I N+GN + ++ +L + L H A
Sbjct: 240 DGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFR 299
Query: 366 VIEM-----PGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYL 409
V+E G DV +I +A + + P D+Q + + + ++L
Sbjct: 300 VVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFL 348
>pdb|1EQ2|A Chain A, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|B Chain B, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|C Chain C, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|D Chain D, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|E Chain E, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|F Chain F, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|G Chain G, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|H Chain H, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|I Chain I, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|J Chain J, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
Length = 310
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 79/337 (23%), Positives = 135/337 (40%), Gaps = 55/337 (16%)
Query: 93 VLVTGAAGFVGTHVSLALKKRG-DGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDI 151
++VTG AGF+G+++ AL +G ++ +DN LK K FV D+
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDN--------LKDGTK--------FVNLVDL 45
Query: 152 NDAKLLAK---LFDAVA------FTHVMHLAAQAGV-----RYAMQNPHSYVHSNIAGLV 197
N A + K L +A + H A + +Y M N + Y
Sbjct: 46 NIADYMDKEDFLIQIMAGEEFGDVEAIFHEGAXSSTTEWDGKYMMDNNYQYSKE------ 99
Query: 198 TLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYN 257
LL C + ++ASS++ YG F E+ ++P ++Y +K +E
Sbjct: 100 -LLHYC--LEREIPFLYASSAATYG-GRTSDFIESREYEKPLNVYGYSKFLFDEYVRQIL 155
Query: 258 HIYGLSITGLRFFTVYGPWG--RPDMAYFSFTRN--ILQGKPITVYRGKNHVDLARDFTY 313
I G R+F VYGP + MA +F N + G+ ++ G + RDF Y
Sbjct: 156 PEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSEN--FKRDFVY 213
Query: 314 IDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNG 373
+ D+ L L+ IFNLG + + + + K K + I P
Sbjct: 214 VGDVADVNLWFLENGVSG----IFNLGTGRAESFQAVADATLAYHK-KGQIEYIPFPDKL 268
Query: 374 D---VPFTHANISSAQKEFGYRPTTDLQTGLKKFVRW 407
FT A++++ + +P + G+ +++ W
Sbjct: 269 KGRYQAFTQADLTNLRAAGYDKPFKTVAEGVTEYMAW 305
>pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna
pdb|1Z7E|B Chain B, Crystal Structure Of Full Length Arna
pdb|1Z7E|C Chain C, Crystal Structure Of Full Length Arna
pdb|1Z7E|D Chain D, Crystal Structure Of Full Length Arna
pdb|1Z7E|E Chain E, Crystal Structure Of Full Length Arna
pdb|1Z7E|F Chain F, Crystal Structure Of Full Length Arna
Length = 660
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 75/348 (21%), Positives = 133/348 (38%), Gaps = 46/348 (13%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIN 152
VL+ G GF+G H++ L + D++ Y A LN+ +EGDI+
Sbjct: 318 VLILGVNGFIGNHLTERLLRE-------DHYEVYGLDIGSDAISRFLNHPHFHFVEGDIS 370
Query: 153 DAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSI 212
+ + V+ L A A +NP + + ++ C + I
Sbjct: 371 IHSEWIE-YHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYC--VKYRKRI 427
Query: 213 VWASSSSVYGLNENVPFSE------ADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITG 266
++ S+S VYG+ + F E ++P +Y+ +K+ + + Y GL T
Sbjct: 428 IFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTL 487
Query: 267 LRFFTVYGPWGRPD----------MAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDD 316
R F GP R D A N+++G PI + G R FT I D
Sbjct: 488 FRPFNWMGP--RLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQ---KRCFTDIRD 542
Query: 317 IVKGCLGSLDTSAGPAPYRIFNLGN-TSPVTVPKLVNI---------LERHLKVKAKKNV 366
++ ++ + I N+GN + ++ +L + L H A V
Sbjct: 543 GIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRV 602
Query: 367 IEM-----PGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYL 409
+E G DV +I +A + + P D+Q + + + ++L
Sbjct: 603 VESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFL 650
>pdb|1GY8|A Chain A, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|B Chain B, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|C Chain C, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|D Chain D, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|2CNB|A Chain A, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|B Chain B, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|C Chain C, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|D Chain D, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
Length = 397
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 91/207 (43%), Gaps = 25/207 (12%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRG-------DGVVGLDNFNNYYDPSLKKARKALLNNHG 143
M VLV G AG++G+H AL + D +VG +++ + ARK L + G
Sbjct: 3 MRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARK-LQQSDG 61
Query: 144 ---------VFVIEGDINDAKLLAKLFDAVA-FTHVMHLAAQAGVRYAMQNPHSYVHSNI 193
+ GD+ + L +F V+H+ A V ++++P Y +N+
Sbjct: 62 PKPPWADRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNV 121
Query: 194 AGLVTLLEACKSANPQPSIVWASSSSVYG------LNENVPFSEADRTDQPASLYAATKK 247
G++ LL+A + I+++SS++++G ++ N + + P S Y +K
Sbjct: 122 VGILRLLQA-MLLHKCDKIIFSSSAAIFGNPTMGSVSTNAEPIDINAKKSPESPYGESKL 180
Query: 248 AGEEIAHTYNHIYGLSITGLRFFTVYG 274
E + YG+ LR+F G
Sbjct: 181 IAERMIRDCAEAYGIKGICLRYFNACG 207
>pdb|2Z1M|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
Length = 345
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 83/181 (45%), Gaps = 5/181 (2%)
Query: 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEG 149
G L+TG G G +++ L ++G V G D + + S + + N+ V +I
Sbjct: 3 GKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEF-ASWRLKELGIEND--VKIIHM 59
Query: 150 DINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQ 209
D+ + + + + V V +LAAQ+ V + + P + G++ +LEA ++ P
Sbjct: 60 DLLEFSNIIRTIEKVQPDEVYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPD 119
Query: 210 PSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGL-SITGLR 268
AS+S ++G + +P +E P S YA K G I Y Y + + +G+
Sbjct: 120 TKFYQASTSEMFGKVQEIPQTEKTPF-YPRSPYAVAKLFGHWITVNYREAYNMFACSGIL 178
Query: 269 F 269
F
Sbjct: 179 F 179
>pdb|2X6T|A Chain A, Agme Bound To Adp-B-Mannose
pdb|2X6T|B Chain B, Agme Bound To Adp-B-Mannose
pdb|2X6T|C Chain C, Agme Bound To Adp-B-Mannose
pdb|2X6T|D Chain D, Agme Bound To Adp-B-Mannose
pdb|2X6T|E Chain E, Agme Bound To Adp-B-Mannose
pdb|2X6T|F Chain F, Agme Bound To Adp-B-Mannose
pdb|2X6T|G Chain G, Agme Bound To Adp-B-Mannose
pdb|2X6T|H Chain H, Agme Bound To Adp-B-Mannose
pdb|2X6T|I Chain I, Agme Bound To Adp-B-Mannose
pdb|2X6T|J Chain J, Agme Bound To Adp-B-Mannose
pdb|2X86|A Chain A, Agme Bound To Adp-b-mannose
pdb|2X86|B Chain B, Agme Bound To Adp-b-mannose
pdb|2X86|C Chain C, Agme Bound To Adp-b-mannose
pdb|2X86|D Chain D, Agme Bound To Adp-b-mannose
pdb|2X86|E Chain E, Agme Bound To Adp-b-mannose
pdb|2X86|F Chain F, Agme Bound To Adp-b-mannose
pdb|2X86|G Chain G, Agme Bound To Adp-b-mannose
pdb|2X86|H Chain H, Agme Bound To Adp-b-mannose
pdb|2X86|I Chain I, Agme Bound To Adp-b-mannose
pdb|2X86|J Chain J, Agme Bound To Adp-b-mannose
pdb|2X86|K Chain K, Agme Bound To Adp-b-mannose
pdb|2X86|L Chain L, Agme Bound To Adp-b-mannose
pdb|2X86|M Chain M, Agme Bound To Adp-b-mannose
pdb|2X86|N Chain N, Agme Bound To Adp-b-mannose
pdb|2X86|O Chain O, Agme Bound To Adp-b-mannose
pdb|2X86|P Chain P, Agme Bound To Adp-b-mannose
pdb|2X86|Q Chain Q, Agme Bound To Adp-b-mannose
pdb|2X86|R Chain R, Agme Bound To Adp-b-mannose
pdb|2X86|S Chain S, Agme Bound To Adp-b-mannose
pdb|2X86|T Chain T, Agme Bound To Adp-b-mannose
Length = 357
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 78/337 (23%), Positives = 135/337 (40%), Gaps = 55/337 (16%)
Query: 93 VLVTGAAGFVGTHVSLALKKRG-DGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDI 151
++VTG AGF+G+++ AL +G ++ +DN LK K FV D+
Sbjct: 49 IIVTGGAGFIGSNIVKALNDKGITDILVVDN--------LKDGTK--------FVNLVDL 92
Query: 152 NDAKLLAK---LFDAVA------FTHVMHLAAQAGV-----RYAMQNPHSYVHSNIAGLV 197
N A + K L +A + H A + +Y M N + Y
Sbjct: 93 NIADYMDKEDFLIQIMAGEEFGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKE------ 146
Query: 198 TLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYN 257
LL C + ++ASS++ YG F E+ ++P +++ +K +E
Sbjct: 147 -LLHYC--LEREIPFLYASSAATYG-GRTSDFIESREYEKPLNVFGYSKFLFDEYVRQIL 202
Query: 258 HIYGLSITGLRFFTVYGPWG--RPDMAYFSFTRN--ILQGKPITVYRGKNHVDLARDFTY 313
I G R+F VYGP + MA +F N + G+ ++ G + RDF Y
Sbjct: 203 PEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSEN--FKRDFVY 260
Query: 314 IDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNG 373
+ D+ L L+ IFNLG + + + + K K + I P
Sbjct: 261 VGDVADVNLWFLENGVSG----IFNLGTGRAESFQAVADATLAYHK-KGQIEYIPFPDKL 315
Query: 374 D---VPFTHANISSAQKEFGYRPTTDLQTGLKKFVRW 407
FT A++++ + +P + G+ +++ W
Sbjct: 316 KGRYQAFTQADLTNLRAAGYDKPFKTVAEGVTEYMAW 352
>pdb|4ID9|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4ID9|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4IDG|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
pdb|4IDG|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
Length = 347
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 85/319 (26%), Positives = 125/319 (39%), Gaps = 66/319 (20%)
Query: 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIE 148
G +LVTG+AG VG V AL+ +G V G D PS + +
Sbjct: 18 GSHMILVTGSAGRVGRAVVAALRTQGRTVRGFD-----LRPSGTGGEEVV---------- 62
Query: 149 GDINDAKLLAKLFDAV-AFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSAN 207
G + D + L+ DA+ + V+HL A + +A + N+ G LL+A +A
Sbjct: 63 GSLEDGQALS---DAIMGVSAVLHLGAF--MSWAPADRDRMFAVNVEGTRRLLDAASAAG 117
Query: 208 PQPSIVWASSSSVYGLN--ENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSIT 265
+ V+ASS VY N E +P +E D P S Y TK GEE+ + +
Sbjct: 118 VR-RFVFASSGEVYPENRPEFLPVTE-DHPLCPNSPYGLTKLLGEELVRFHQRSGAMETV 175
Query: 266 GLRFFTVY-------------GP-------------WGRPDMAYFSFTRNILQGKPITVY 299
LRF GP +G +A +R+I G+P +
Sbjct: 176 ILRFSHTQDATELLDEDSFFSGPRFFLRPRIHQQQNFGNAAIAELLQSRDI--GEPSHIL 233
Query: 300 -RGKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHL 358
R +N T D+V G L +LD A FNLG P L+
Sbjct: 234 ARNENGRPFRMHITDTRDMVAGILLALDHPE--AAGGTFNLGADEPADFAALLP------ 285
Query: 359 KVKAKKNV----IEMPGNG 373
K+ A + ++ PG+G
Sbjct: 286 KIAALTGLPIVTVDFPGDG 304
>pdb|1N7G|A Chain A, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|B Chain B, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|C Chain C, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|D Chain D, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7H|A Chain A, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
pdb|1N7H|B Chain B, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
Length = 381
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 84/339 (24%), Positives = 132/339 (38%), Gaps = 51/339 (15%)
Query: 94 LVTGAAGFVGTHVSLALKKRGDGVVGL----DNFNN------YYDPSLKKARKALLNNHG 143
L+TG G G++++ L +G V GL NFN Y DP KAL+ H
Sbjct: 32 LITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDP--HNVNKALMKLH- 88
Query: 144 VFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEAC 203
D+ DA L + D + V +LAAQ+ V + + P G + LLEA
Sbjct: 89 ----YADLTDASSLRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAV 144
Query: 204 KS----ANPQPSIVWASSSSVYG-----LNENVPFSEADRTDQPASLYAATKKAGEEIAH 254
+S + A SS ++G +E PF P S YAA+K A
Sbjct: 145 RSHTIDSGRTVKYYQAGSSEMFGSTPPPQSETTPF-------HPRSPYAASKCAAHWYTV 197
Query: 255 TYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTR---NILQGKPITVYRGKNHVDLARDF 311
Y YGL F P + TR I G ++ G ++ +RD+
Sbjct: 198 NYREAYGLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFLG--NLQASRDW 255
Query: 312 TYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPG 371
+ D V+ L P Y + TV + +++ +L + K+ +E+
Sbjct: 256 GFAGDYVEAMWLMLQQEK-PDDYVV---ATEEGHTVEEFLDVSFGYLGLNW-KDYVEIDQ 310
Query: 372 N----GDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVR 406
+V + S A++ G++P Q G +K V+
Sbjct: 311 RYFRPAEVDNLQGDASKAKEVLGWKP----QVGFEKLVK 345
>pdb|1WVG|A Chain A, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
pdb|1WVG|B Chain B, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
Length = 359
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 79/181 (43%), Gaps = 24/181 (13%)
Query: 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEG 149
G V VTG GF G+ +SL L + G V G + PSL + + LN+ ++E
Sbjct: 9 GKRVFVTGHTGFKGSWLSLWLTEMGAIVKGY-ALDAPTVPSLFEIVR--LND----LMES 61
Query: 150 DINDAKLLAKLFDAVAFTH---VMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSA 206
I D + KL ++A V H+AAQ VR + + P +N+ G V LLE K
Sbjct: 62 HIGDIRDFEKLRSSIAEFKPEIVFHMAAQPLVRLSYEQPIKTYSTNVMGTVHLLETVKQV 121
Query: 207 NPQPSIVWASSSS-------VYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHI 259
++V +S V+G EN P D Y+ +K E +A + +
Sbjct: 122 GNIKAVVNITSDKCYDNREWVWGYRENEPMGGYDP-------YSNSKGCAELVASAFRNS 174
Query: 260 Y 260
+
Sbjct: 175 F 175
>pdb|1RPN|A Chain A, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|B Chain B, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|C Chain C, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|D Chain D, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
Length = 335
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 84/342 (24%), Positives = 132/342 (38%), Gaps = 32/342 (9%)
Query: 79 VRSSAQIHRSGGM--SVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARK 136
+R S H G M S LVTG G G +++ L ++G V GL + S + R
Sbjct: 1 MRGSHHHHHHGSMTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRS----SDTRWRL 56
Query: 137 ALLNNHGVFVIE-GDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAG 195
L G E GD+ DA + + V +LAAQ+ V + P + + G
Sbjct: 57 RELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLG 116
Query: 196 LVTLLEACKSANPQPSIVWASSSSVYGL------NENVPFSEADRTDQPASLYAATKKAG 249
+ LLEA + +P+ AS+S ++GL +EN PF P S Y K G
Sbjct: 117 VTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQDENTPFY-------PRSPYGVAKLYG 169
Query: 250 EEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQ---GKPITVYRGKNHVD 306
I Y +GL + F P + T + + GK + G +VD
Sbjct: 170 HWITVNYRESFGLHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLG--NVD 227
Query: 307 LARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNV 366
RD+ + D V+ L + + TV + I H+ + + +
Sbjct: 228 AKRDWGFAGDYVEAMWLMLQQDKADD----YVVATGVTTTVRDMCQIAFEHVGLDYRDFL 283
Query: 367 IEMPG---NGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFV 405
P +V N + AQ+ G++P T L ++ V
Sbjct: 284 KIDPAFFRPAEVDVLLGNPAKAQRVLGWKPRTSLDELIRMMV 325
>pdb|1I24|A Chain A, High Resolution Crystal Structure Of The Wild-Type Protein
Sqd1, With Nad And Udp-Glucose
Length = 404
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 82/332 (24%), Positives = 125/332 (37%), Gaps = 57/332 (17%)
Query: 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNF-NNYYDPSL-------------KKAR 135
G V+V G G+ G +L L K+ V +DN +D L + +R
Sbjct: 11 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISR 70
Query: 136 KALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYV---HSN 192
L + + GDI D + LA+ F + V+H Q Y+M + V H+N
Sbjct: 71 WKALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNN 130
Query: 193 IAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEA-------DRTD------QPA 239
+ G + +L A K + +V + YG N+ E RTD Q +
Sbjct: 131 VIGTLNVLFAIKEFGEECHLVKLGTMGEYG-TPNIDIEEGYITITHNGRTDTLPYPKQAS 189
Query: 240 SLYAATK-KAGEEIAHTYNHIYGLSITGLRFFTVYGP-----------WGRPD------M 281
S Y +K IA T +G+ T L VYG R D
Sbjct: 190 SFYHLSKVHDSHNIAFTCK-AWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGT 248
Query: 282 AYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGN 341
A F G P+TVY GK R + I D V+ ++ A +R+FN
Sbjct: 249 ALNRFCVQAAVGHPLTVY-GKG--GQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFN-QF 304
Query: 342 TSPVTVPKLVNILER---HLKVKAKKNVIEMP 370
T +V +L +++ + L + KK + P
Sbjct: 305 TEQFSVNELASLVTKAGSKLGLDVKKMTVPNP 336
>pdb|1I2B|A Chain A, Crystal Structure Of Mutant T145a Sqd1 Protein Complex
With Nad And Udp-SulfoquinovoseUDP-Glucose
pdb|1I2C|A Chain A, Crystal Structure Of Mutant T145a Sqd1 Protein Complex
With Nad And Udp-Glucose
Length = 404
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 82/332 (24%), Positives = 125/332 (37%), Gaps = 57/332 (17%)
Query: 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNF-NNYYDPSL-------------KKAR 135
G V+V G G+ G +L L K+ V +DN +D L + +R
Sbjct: 11 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISR 70
Query: 136 KALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYV---HSN 192
L + + GDI D + LA+ F + V+H Q Y+M + V H+N
Sbjct: 71 WKALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNN 130
Query: 193 IAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEA-------DRTD------QPA 239
+ G + +L A K + +V + YG N+ E RTD Q +
Sbjct: 131 VIGTLNVLFAIKEFGEECHLVKLGAMGEYG-TPNIDIEEGYITITHNGRTDTLPYPKQAS 189
Query: 240 SLYAATK-KAGEEIAHTYNHIYGLSITGLRFFTVYGP-----------WGRPD------M 281
S Y +K IA T +G+ T L VYG R D
Sbjct: 190 SFYHLSKVHDSHNIAFTCK-AWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGT 248
Query: 282 AYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGN 341
A F G P+TVY GK R + I D V+ ++ A +R+FN
Sbjct: 249 ALNRFCVQAAVGHPLTVY-GKG--GQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFN-QF 304
Query: 342 TSPVTVPKLVNILER---HLKVKAKKNVIEMP 370
T +V +L +++ + L + KK + P
Sbjct: 305 TEQFSVNELASLVTKAGSKLGLDVKKMTVPNP 336
>pdb|1QRR|A Chain A, Crystal Structure Of Sqd1 Protein Complex With Nad And
Udp- Glucose
Length = 394
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 74/294 (25%), Positives = 109/294 (37%), Gaps = 53/294 (18%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNF-NNYYDPSL-------------KKARKAL 138
V+V G G+ G +L L K+ V +DN +D L + +R
Sbjct: 4 VMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKA 63
Query: 139 LNNHGVFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYV---HSNIAG 195
L + + GDI D + LA+ F + V+H Q Y+M + V H+N+ G
Sbjct: 64 LTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIG 123
Query: 196 LVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEA-------DRTD------QPASLY 242
+ +L A K + +V + YG N+ E RTD Q +S Y
Sbjct: 124 TLNVLFAIKEFGEECHLVKLGTMGEYG-TPNIDIEEGYITITHNGRTDTLPYPKQASSFY 182
Query: 243 AATK-KAGEEIAHTYNHIYGLSITGLRFFTVYGP-----------WGRPD------MAYF 284
+K IA T +G+ T L VYG R D A
Sbjct: 183 HLSKVHDSHNIAFTCK-AWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTALN 241
Query: 285 SFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFN 338
F G P+TVY GK R + I D V+ ++ A +R+FN
Sbjct: 242 RFCVQAAVGHPLTVY-GKG--GQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFN 292
>pdb|2ZKL|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling
Protein Capf From Staphylococcus Aureus
Length = 369
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 108/288 (37%), Gaps = 73/288 (25%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGD 150
M++++TGA GFVG ++ L D H +F +
Sbjct: 1 MNIVITGAKGFVGKNLKADLTSTTD--------------------------HHIFEVHRQ 34
Query: 151 INDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQP 210
+ +L + L A H+ AGV ++ + N++ L +L+ +P
Sbjct: 35 TKEEELESALLKADFIVHL------AGVNRP-EHDKEFSLGNVSYLDHVLDILTRNTKKP 87
Query: 211 SIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFF 270
+I+ +SS D P Y +K GE++ Y YG ++ R+
Sbjct: 88 AILLSSSIQA-------------TQDNP---YGESKLQGEQLLREYAEEYGNTVYIYRWP 131
Query: 271 TVYGPWGRPDM--AYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIV----KGCLGS 324
++G W +P+ +F I + + I V N ++ Y+DDIV + G+
Sbjct: 132 NLFGKWCKPNYNSVIATFCYKIARNEEIQV----NDRNVELTLNYVDDIVAEIKRAIEGT 187
Query: 325 LDTSAG-PAPYRIF--NLGNTSPV-----------TVPKLVNILERHL 358
G P +F LG + T+PKL N+ E+ L
Sbjct: 188 PTIENGVPTVPNVFKVTLGEIVDLLYKFKQSRLDRTLPKLDNLFEKDL 235
>pdb|3AY3|A Chain A, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|B Chain B, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|C Chain C, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|D Chain D, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
Length = 267
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 80/182 (43%), Gaps = 21/182 (11%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIN 152
+LVTGAAG VG+ + L V ++ D +A + ++ D+
Sbjct: 5 LLVTGAAGGVGSAIRPHLGTLAHEV----RLSDIVDLGAAEAHEE--------IVACDLA 52
Query: 153 DAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNP-HSYVHSNIAGLVTLLEACKSANPQPS 211
DA+ + L ++HL +++ P + + +NI G L EA ++ +P
Sbjct: 53 DAQAVHDLVKDC--DGIIHLGG-----VSVERPWNDILQANIIGAYNLYEAARNLG-KPR 104
Query: 212 IVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFT 271
IV+ASS+ G + + +P SLY +K GE++A Y H + + +R +
Sbjct: 105 IVFASSNHTIGYYPRTTRIDTEVPRRPDSLYGLSKCFGEDLASLYYHKFDIETLNIRIGS 164
Query: 272 VY 273
+
Sbjct: 165 CF 166
>pdb|2YY7|A Chain A, Crystal Structure Of Thermolabile L-Threonine
Dehydrogenase From Flavobacterium Frigidimaris Kuc-1
pdb|2YY7|B Chain B, Crystal Structure Of Thermolabile L-Threonine
Dehydrogenase From Flavobacterium Frigidimaris Kuc-1
Length = 312
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 81/182 (44%), Gaps = 21/182 (11%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIN 152
+L+ GA G +GT ++ L+K L N ++K ++N+ G F + +
Sbjct: 5 ILIIGACGQIGTELTQKLRK-------LYGTENVIASDIRKLNTDVVNS-GPFEVVNAL- 55
Query: 153 DAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSI 212
D + L + T + +AA A +NP N+ L +L A I
Sbjct: 56 DFNQIEHLVEVHKITDIYLMAALLSAT-AEKNPAFAWDLNMNSLFHVLN-LAKAKKIKKI 113
Query: 213 VWASSSSVYGLNENVPFSEADRTDQ-----PASLYAATKKAGEEIAHTYNHIYGLSITGL 267
W SS +V+G P + + T Q P+++Y +K+AGE Y++IYG+ + +
Sbjct: 114 FWPSSIAVFG-----PTTPKENTPQYTIMEPSTVYGISKQAGERWCEYYHNIYGVDVRSI 168
Query: 268 RF 269
R+
Sbjct: 169 RY 170
>pdb|3ST7|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling
Protein Capf From Staphylococcus Aureus
pdb|3VHR|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling
Protein Capf From Staphylococcus Aureus In Space Group
C2221
Length = 369
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 61/287 (21%), Positives = 107/287 (37%), Gaps = 73/287 (25%)
Query: 92 SVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDI 151
++++TGA GFVG ++ L D H +F +
Sbjct: 2 NIVITGAKGFVGKNLKADLTSTTD--------------------------HHIFEVHRQT 35
Query: 152 NDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPS 211
+ +L + L A H+ AGV ++ + N++ L +L+ +P+
Sbjct: 36 KEEELESALLKADFIVHL------AGVNRP-EHDKEFSLGNVSYLDHVLDILTRNTKKPA 88
Query: 212 IVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFT 271
I+ +SS D P Y +K GE++ Y YG ++ R+
Sbjct: 89 ILLSSSIQA-------------TQDNP---YGESKLQGEQLLREYAEEYGNTVYIYRWPN 132
Query: 272 VYGPWGRPDM--AYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIV----KGCLGSL 325
++G W +P+ +F I + + I V N ++ Y+DDIV + G+
Sbjct: 133 LFGKWCKPNYNSVIATFCYKIARNEEIQV----NDRNVELTLNYVDDIVAEIKRAIEGTP 188
Query: 326 DTSAG-PAPYRIFN--LGNTSPV-----------TVPKLVNILERHL 358
G P +F LG + T+PKL N+ E+ L
Sbjct: 189 TIENGVPTVPNVFKVTLGEIVDLLYKFKQSRLDRTLPKLDNLFEKDL 235
>pdb|3A1N|A Chain A, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A1N|B Chain B, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A4V|A Chain A, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A4V|B Chain B, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
Length = 317
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 73/179 (40%), Gaps = 18/179 (10%)
Query: 93 VLVTGAAGFVGTHVS--LALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGD 150
+LVTG++G +GT + LA K V+ D + G+ I D
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQR--------------DTGGIKFITLD 47
Query: 151 INDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQP 210
+++ + + + + + HLA + ++P N+ G +LEA K +
Sbjct: 48 VSNRDEIDRAVEKYSIDAIFHLAGILSAK-GEKDPALAYKVNMNGTYNILEAAKQHRVE- 105
Query: 211 SIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRF 269
+V S+ V+G + +P ++Y TK A E + Y +GL + LR+
Sbjct: 106 KVVIPSTIGVFGPETPKNKVPSITITRPRTMYGVTKIAAELLGQYYYEKFGLDVRSLRY 164
>pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN4|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN6|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN6|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN8|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN8|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN9|A Chain A, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GN9|B Chain B, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GNA|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
pdb|2GNA|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
Length = 344
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 97/247 (39%), Gaps = 40/247 (16%)
Query: 92 SVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKAL-LNNHGVFVIEGD 150
++L+TG G G ++ Y LK++ A+ N+ + GD
Sbjct: 23 TILITGGTGSFGK----CFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGD 78
Query: 151 INDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQP 210
+ D + L + V +H AA V A NP + +NI G ++ AC
Sbjct: 79 VRDLERLNYALEGVDI--CIHAAALKHVPIAEYNPLECIKTNIMGASNVINAC------- 129
Query: 211 SIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITG---L 267
+ + S V L+ D+ P +LY ATK +++ + N+ G S T +
Sbjct: 130 --LKNAISQVIALS-------TDKAANPINLYGATKLCSDKLFVSANNFKGSSQTQFSVV 180
Query: 268 RFFTVYGPWGRPDMAYFSFTRNILQGK----PITVYRGKNHVDLARDFTYIDDIVKGCLG 323
R+ V G G + F + ++Q K PIT R + R + +D+ V L
Sbjct: 181 RYGNVVGSRG----SVVPFFKKLVQNKASEIPITDIR------MTRFWITLDEGVSFVLK 230
Query: 324 SLDTSAG 330
SL G
Sbjct: 231 SLKRMHG 237
>pdb|3A9W|A Chain A, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A9W|B Chain B, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3AJR|A Chain A, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
pdb|3AJR|B Chain B, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
Length = 317
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 73/179 (40%), Gaps = 18/179 (10%)
Query: 93 VLVTGAAGFVGTHVS--LALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGD 150
+LVTG++G +GT + LA K V+ D + G+ I D
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQR--------------DTGGIKFITLD 47
Query: 151 INDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQP 210
+++ + + + + + HLA + ++P N+ G +LEA K +
Sbjct: 48 VSNRDEIDRAVEKYSIDAIFHLAGILSAK-GEKDPALAYKVNMNGTYNILEAAKQHRVE- 105
Query: 211 SIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRF 269
+V S+ V+G + +P +++ TK A E + Y +GL + LR+
Sbjct: 106 KVVIPSTIGVFGPETPKNKVPSITITRPRTMFGVTKIAAELLGQYYYEKFGLDVRSLRY 164
>pdb|3RFT|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFT|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFT|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFV|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
pdb|3RFV|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
pdb|3RFV|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
Length = 267
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 74/178 (41%), Gaps = 21/178 (11%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIN 152
+LVTGAAG +G + L + ++ L + + DP+ ++ D+
Sbjct: 6 LLVTGAAGQLGRVMRERLAPMAE-ILRLADLSPL-DPAGPNEE----------CVQCDLA 53
Query: 153 DAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYV-HSNIAGLVTLLEACKSANPQPS 211
DA + + ++HL +++ P + NI GL L EA + A+ QP
Sbjct: 54 DANAVNAM--VAGCDGIVHLGG-----ISVEKPFEQILQGNIIGLYNLYEAAR-AHGQPR 105
Query: 212 IVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRF 269
IV+ASS+ G D +P LY +K GE +A Y +G +R
Sbjct: 106 IVFASSNHTIGYYPQTERLGPDVPARPDGLYGVSKCFGENLARMYFDKFGQETALVRI 163
>pdb|1BSV|A Chain A, Gdp-Fucose Synthetase From Escherichia Coli Complex With
Nadph
pdb|1FXS|A Chain A, Gdp-fucose Synthetase From Escherichia Coli Complex With
Nadp
pdb|1GFS|A Chain A, Gdp-Fucose Synthetase From E. Coli
Length = 321
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 69/348 (19%), Positives = 129/348 (37%), Gaps = 55/348 (15%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIN 152
V + G G VG+ + L++RGD + L + R L ++
Sbjct: 6 VFIAGHRGMVGSAIRRQLEQRGDVELVL------------RTRDEL-----------NLL 42
Query: 153 DAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQN-PHSYVHSNIAGLVTLLEACKSANPQPS 211
D++ + F + V AA+ G A P +++ N+ ++ A N
Sbjct: 43 DSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQ-NDVNK 101
Query: 212 IVWASSSSVYGLNENVPFSEADR-------TDQPASLYAATKKAGEEIAHTYNHIYGLSI 264
+++ SS +Y P +E++ T++P YA K AG ++ +YN YG
Sbjct: 102 LLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEP---YAIAKIAGIKLCESYNRQYGRDY 158
Query: 265 TGLRFFTVYGPWG--RPDMAYF------SFTRNILQGKPITVYRGKNHVDLARDFTYIDD 316
+ +YGP P ++ F Q P V G R+F ++DD
Sbjct: 159 RSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQNAPDVVVWGSG--TPMREFLHVDD 216
Query: 317 IVKGCLGSLDTS-------AGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEM 369
+ + ++ + P I N+G T+ +L + + + K + V +
Sbjct: 217 MAAASIHVMELAHEVWLENTQPMLSHI-NVGTGVDCTIRELAQTIAKVVGYKGRV-VFDA 274
Query: 370 PGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYYGYNRG 417
P +++ + G+ L+ GL +W+L RG
Sbjct: 275 SKPDGTPRKLLDVTRLH-QLGWYHEISLEAGLASTYQWFLENQDRFRG 321
>pdb|1E6U|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase
Length = 321
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 69/348 (19%), Positives = 129/348 (37%), Gaps = 55/348 (15%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIN 152
V + G G VG+ + L++RGD + L + R L ++
Sbjct: 6 VFIAGHRGMVGSAIRRQLEQRGDVELVL------------RTRDEL-----------NLL 42
Query: 153 DAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQN-PHSYVHSNIAGLVTLLEACKSANPQPS 211
D++ + F + V AA+ G A P +++ N+ ++ A N
Sbjct: 43 DSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQ-NDVNK 101
Query: 212 IVWASSSSVYGLNENVPFSEADR-------TDQPASLYAATKKAGEEIAHTYNHIYGLSI 264
+++ SS +Y P +E++ T++P YA K AG ++ +YN YG
Sbjct: 102 LLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEP---YAIAKIAGIKLCESYNRQYGRDY 158
Query: 265 TGLRFFTVYGPWG--RPDMAYF------SFTRNILQGKPITVYRGKNHVDLARDFTYIDD 316
+ +YGP P ++ F Q P V G R+F ++DD
Sbjct: 159 RSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSG--TPMREFLHVDD 216
Query: 317 IVKGCLGSLDTS-------AGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEM 369
+ + ++ + P I N+G T+ +L + + + K + V +
Sbjct: 217 MAAASIHVMELAHEVWLENTQPMLSHI-NVGTGVDCTIRELAQTIAKVVGYKGRV-VFDA 274
Query: 370 PGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYYGYNRG 417
P +++ + G+ L+ GL +W+L RG
Sbjct: 275 SKPDGTPRKLLDVTRLH-QLGWYHEISLEAGLASTYQWFLENQDRFRG 321
>pdb|1BWS|A Chain A, Crystal Structure Of Gdp-4-Keto-6-Deoxy-D-Mannose
EpimeraseREDUCTASE From Escherichia Coli A Key Enzyme In
The Biosynthesis Of Gdp-L- Fucose
Length = 321
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 69/348 (19%), Positives = 128/348 (36%), Gaps = 55/348 (15%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIN 152
V + G G VG+ + L++RGD + L + R L ++
Sbjct: 6 VFIAGHRGMVGSAIRRQLEQRGDVELVL------------RTRDEL-----------NLL 42
Query: 153 DAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQN-PHSYVHSNIAGLVTLLEACKSANPQPS 211
D++ + F + V AA+ G A P +++ N+ ++ A N
Sbjct: 43 DSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQ-NDVNK 101
Query: 212 IVWASSSSVYGLNENVPFSEADR-------TDQPASLYAATKKAGEEIAHTYNHIYGLSI 264
+++ SS +Y P +E++ T++P YA K AG ++ +YN YG
Sbjct: 102 LLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEP---YAIAKIAGIKLCESYNRQYGRDY 158
Query: 265 TGLRFFTVYGPWG--RPDMAYF------SFTRNILQGKPITVYRGKNHVDLARDFTYIDD 316
+ +YGP P ++ F Q P V G R+F ++DD
Sbjct: 159 RSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQNAPDVVVWGSG--TPMREFLHVDD 216
Query: 317 IVKGCLGSLDTS-------AGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEM 369
+ + ++ + P I N+G T+ L + + + K + V +
Sbjct: 217 MAAASIHVMELAHEVWLENTQPMLSHI-NVGTGVDCTIRDLAQTIAKVVGYKGRV-VFDA 274
Query: 370 PGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYYGYNRG 417
P +++ + G+ L+ GL +W+L RG
Sbjct: 275 SKPDGTPRKLLDVTRLH-QLGWYHEISLEAGLASTYQWFLENQDRFRG 321
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 57/272 (20%), Positives = 106/272 (38%), Gaps = 36/272 (13%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHG----VFVIE 148
V VTG GF+G+ + +L + G V N DP K+ L N G +
Sbjct: 4 VCVTGGTGFLGSWIIKSLLENGYSV----NTTIRADPERKRDVSFLTNLPGASEKLHFFN 59
Query: 149 GDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYV-HSNIAGLVTLLEACKSAN 207
D+++ A + + H A+ + +A+ P V + G + +L+AC ++
Sbjct: 60 ADLSNPDSFAAAIEGC--VGIFHTASP--IDFAVSEPEEIVTKRTVDGALGILKACVNSK 115
Query: 208 PQPSIVWASSSSVYGLN-------ENVPFSEAD--RTDQPASL-YAATKKAGEEIAHTYN 257
++ SS S N + +S+ D R+ +P YA +K E+ +
Sbjct: 116 TVKRFIYTSSGSAVSFNGKDKDVLDESDWSDVDLLRSVKPFGWNYAVSKTLAEKAVLEFG 175
Query: 258 HIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLAR-DFTYIDD 316
G+ + L + G + P + + ++ + V K + + R ++DD
Sbjct: 176 EQNGIDVVTLILPFIVGRFVCPKLP------DSIEKALVLVLGKKEQIGVTRFHMVHVDD 229
Query: 317 IVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVP 348
+ + + L+ S Y N SP VP
Sbjct: 230 VARAHIYLLENSVPGGRY------NCSPFIVP 255
>pdb|2HRZ|A Chain A, The Crystal Structure Of The Nucleoside-diphosphate-sugar
Epimerase From Agrobacterium Tumefaciens
Length = 342
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 85/212 (40%), Gaps = 19/212 (8%)
Query: 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVG---LDNFN--NYYDPSLKKARKALLNNHGV 144
G + + GAAG VG ++ L K DG +G ++ F + + P ++
Sbjct: 14 GXHIAIIGAAGXVGRKLTQRLVK--DGSLGGKPVEKFTLIDVFQPEAPAGFSGAVDARAA 71
Query: 145 FVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACK 204
D++ KL +A + HLAA + Y N+ G L +A +
Sbjct: 72 -----DLSAPGEAEKLVEARPDV-IFHLAAIVSGEAELDFDKGY-RINLDGTRYLFDAIR 124
Query: 205 SANPQ----PSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIY 260
AN + P +V+ SS +V+G P + T P + Y K E + Y+
Sbjct: 125 IANGKDGYKPRVVFTSSIAVFGAPLPYPIPDEFHT-TPLTSYGTQKAICELLLSDYSRRG 183
Query: 261 GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQ 292
G+R T+ G+P+ A F NIL+
Sbjct: 184 FFDGIGIRLPTICIRPGKPNAAASGFFSNILR 215
>pdb|1E7S|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase K140r
Length = 321
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 68/348 (19%), Positives = 129/348 (37%), Gaps = 55/348 (15%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIN 152
V + G G VG+ + L++RGD + L + R L ++
Sbjct: 6 VFIAGHRGMVGSAIRRQLEQRGDVELVL------------RTRDEL-----------NLL 42
Query: 153 DAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQN-PHSYVHSNIAGLVTLLEACKSANPQPS 211
D++ + F + V AA+ G A P +++ N+ ++ A N
Sbjct: 43 DSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQ-NDVNK 101
Query: 212 IVWASSSSVYGLNENVPFSEADR-------TDQPASLYAATKKAGEEIAHTYNHIYGLSI 264
+++ SS +Y P +E++ T++P YA + AG ++ +YN YG
Sbjct: 102 LLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEP---YAIARIAGIKLCESYNRQYGRDY 158
Query: 265 TGLRFFTVYGPWG--RPDMAYF------SFTRNILQGKPITVYRGKNHVDLARDFTYIDD 316
+ +YGP P ++ F Q P V G R+F ++DD
Sbjct: 159 RSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQSAPDVVVWGSG--TPMREFLHVDD 216
Query: 317 IVKGCLGSLDTS-------AGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEM 369
+ + ++ + P I N+G T+ +L + + + K + V +
Sbjct: 217 MAAASIHVMELAHEVWLENTQPMLSHI-NVGTGVDCTIRELAQTIAKVVGYKGRV-VFDA 274
Query: 370 PGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYYGYNRG 417
P +++ + G+ L+ GL +W+L RG
Sbjct: 275 SKPDGTPRKLLDVTRLH-QLGWYHEISLEAGLASTYQWFLENQDRFRG 321
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 54/248 (21%), Positives = 98/248 (39%), Gaps = 32/248 (12%)
Query: 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLN----NHG 143
S +V VTGA+GF+G+ + + L +RG V DP+ K K LL+
Sbjct: 3 SQSETVCVTGASGFIGSWLVMRLLERGYTVRA-----TVRDPTNVKKVKHLLDLPKAETH 57
Query: 144 VFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYV-HSNIAGLVTLLEA 202
+ + + D+ D + T V H+A + + ++P + V I G++ ++++
Sbjct: 58 LTLWKADLADEGSFDEAIKGC--TGVFHVATP--MDFESKDPENEVIKPTIEGMLGIMKS 113
Query: 203 CKSANPQPSIVWASSSSVYGLNE------------NVPFSEADRTDQPASLYAATKKAGE 250
C +A +V+ SS+ + E ++ F A + A +Y +K E
Sbjct: 114 CAAAKTVRRLVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAKK--MTAWMYFVSKTLAE 171
Query: 251 EIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARD 310
+ A Y + + V GP+ M I PIT +
Sbjct: 172 QAAWKYAKENNIDFITIIPTLVVGPFIMSSMP----PSLITALSPITGNEAHYSIIRQGQ 227
Query: 311 FTYIDDIV 318
F ++DD+
Sbjct: 228 FVHLDDLC 235
>pdb|1E7Q|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase S107a
Length = 321
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 68/348 (19%), Positives = 129/348 (37%), Gaps = 55/348 (15%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIN 152
V + G G VG+ + L++RGD + L + R L ++
Sbjct: 6 VFIAGHRGMVGSAIRRQLEQRGDVELVL------------RTRDEL-----------NLL 42
Query: 153 DAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQN-PHSYVHSNIAGLVTLLEACKSANPQPS 211
D++ + F + V AA+ G A P +++ N+ ++ A N
Sbjct: 43 DSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQ-NDVNK 101
Query: 212 IVWASSSSVYGLNENVPFSEADR-------TDQPASLYAATKKAGEEIAHTYNHIYGLSI 264
+++ +S +Y P +E++ T++P YA K AG ++ +YN YG
Sbjct: 102 LLFLGASCIYPKLAKQPMAESELLQGTLEPTNEP---YAIAKIAGIKLCESYNRQYGRDY 158
Query: 265 TGLRFFTVYGPWG--RPDMAYF------SFTRNILQGKPITVYRGKNHVDLARDFTYIDD 316
+ +YGP P ++ F Q P V G R+F ++DD
Sbjct: 159 RSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQSAPDVVVWGSG--TPMREFLHVDD 216
Query: 317 IVKGCLGSLDTS-------AGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEM 369
+ + ++ + P I N+G T+ +L + + + K + V +
Sbjct: 217 MAAASIHVMELAHEVWLENTQPMLSHI-NVGTGVDCTIRELAQTIAKVVGYKGRV-VFDA 274
Query: 370 PGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYYGYNRG 417
P +++ + G+ L+ GL +W+L RG
Sbjct: 275 SKPDGTPRKLLDVTRLH-QLGWYHEISLEAGLASTYQWFLENQDRFRG 321
>pdb|4B8W|A Chain A, Crystal Structure Of Human Gdp-L-Fucose Synthase With
Bound Nadp And Gdp, Tetragonal Crystal Form
pdb|4B8W|B Chain B, Crystal Structure Of Human Gdp-L-Fucose Synthase With
Bound Nadp And Gdp, Tetragonal Crystal Form
Length = 319
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 72/196 (36%), Gaps = 38/196 (19%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVI--E 148
M +LVTG +G VG + + G G+ G D VFV +
Sbjct: 7 MRILVTGGSGLVGKAIQKVVAD-GAGLPGED---------------------WVFVSSKD 44
Query: 149 GDINDAKLLAKLFDAVAFTHVMHLAAQAG-----VRYAMQNPHSYVHSNIAGLVTLLEAC 203
D+ D LF+ V THV+HLAA G ++Y + VH N L + E
Sbjct: 45 ADLTDTAQTRALFEKVQPTHVIHLAAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVG 104
Query: 204 KSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASL----YAATKKAGEEIAHTYNHI 259
+V S+ ++ P E + P Y+ K+ + Y
Sbjct: 105 AR-----KVVSCLSTCIFPDKTTYPIDETMIHNGPPHNSNFGYSYAKRMIDVQNRAYFQQ 159
Query: 260 YGLSITGLRFFTVYGP 275
YG + T + V+GP
Sbjct: 160 YGCTFTAVIPTNVFGP 175
>pdb|4B8Z|A Chain A, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|B Chain B, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|C Chain C, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|D Chain D, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
Length = 320
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 72/196 (36%), Gaps = 38/196 (19%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVI--E 148
M +LVTG +G VG + + G G+ G D VFV +
Sbjct: 8 MRILVTGGSGLVGKAIQKVVAD-GAGLPGED---------------------WVFVSSKD 45
Query: 149 GDINDAKLLAKLFDAVAFTHVMHLAAQAG-----VRYAMQNPHSYVHSNIAGLVTLLEAC 203
D+ D LF+ V THV+HLAA G ++Y + VH N L + E
Sbjct: 46 ADLTDTAQTRALFEKVQPTHVIHLAAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVG 105
Query: 204 KSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASL----YAATKKAGEEIAHTYNHI 259
+V S+ ++ P E + P Y+ K+ + Y
Sbjct: 106 AR-----KVVSCLSTCIFPDKTTYPIDETMIHNGPPHNSNFGYSYAKRMIDVQNRAYFQQ 160
Query: 260 YGLSITGLRFFTVYGP 275
YG + T + V+GP
Sbjct: 161 YGCTFTAVIPTNVFGP 176
>pdb|3RFX|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
pdb|3RFX|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
pdb|3RFX|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
Length = 267
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 73/178 (41%), Gaps = 21/178 (11%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIN 152
+LVTGAAG +G + L + ++ L + + DP+ ++ D+
Sbjct: 6 LLVTGAAGQLGRVMRERLAPMAE-ILRLADLSPL-DPAGPNEE----------CVQCDLA 53
Query: 153 DAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYV-HSNIAGLVTLLEACKSANPQPS 211
DA + + ++HL +++ P + NI GL L EA + A+ QP
Sbjct: 54 DANAVNAM--VAGCDGIVHLGG-----ISVEKPFEQILQGNIIGLYNLYEAAR-AHGQPR 105
Query: 212 IVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRF 269
IV+ASS+ G D +P L +K GE +A Y +G +R
Sbjct: 106 IVFASSNHTIGYYPQTERLGPDVPARPDGLAGVSKCFGENLARMYFDKFGQETALVRI 163
>pdb|1E7R|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase Y136e
Length = 321
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 67/348 (19%), Positives = 129/348 (37%), Gaps = 55/348 (15%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIN 152
V + G G VG+ + L++RGD + L + R L ++
Sbjct: 6 VFIAGHRGMVGSAIRRQLEQRGDVELVL------------RTRDEL-----------NLL 42
Query: 153 DAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQN-PHSYVHSNIAGLVTLLEACKSANPQPS 211
D++ + F + V AA+ G A P +++ N+ ++ A N
Sbjct: 43 DSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQ-NDVNK 101
Query: 212 IVWASSSSVYGLNENVPFSEADR-------TDQPASLYAATKKAGEEIAHTYNHIYGLSI 264
+++ SS +Y P +E++ T++P ++ K AG ++ +YN YG
Sbjct: 102 LLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPEAI---AKIAGIKLCESYNRQYGRDY 158
Query: 265 TGLRFFTVYGPWG--RPDMAYF------SFTRNILQGKPITVYRGKNHVDLARDFTYIDD 316
+ +YGP P ++ F Q P V G R+F ++DD
Sbjct: 159 RSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQSAPDVVVWGSG--TPMREFLHVDD 216
Query: 317 IVKGCLGSLDTS-------AGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEM 369
+ + ++ + P I N+G T+ +L + + + K + V +
Sbjct: 217 MAAASIHVMELAHEVWLENTQPMLSHI-NVGTGVDCTIRELAQTIAKVVGYKGRV-VFDA 274
Query: 370 PGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYYGYNRG 417
P +++ + G+ L+ GL +W+L RG
Sbjct: 275 SKPDGTPRKLLDVTRLH-QLGWYHEISLEAGLASTYQWFLENQDRFRG 321
>pdb|2RH8|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|B Chain B, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
Length = 338
Score = 35.4 bits (80), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 64/152 (42%), Gaps = 23/152 (15%)
Query: 83 AQIHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNH 142
A H G + V G GFV + + L ++G V DP +K LL
Sbjct: 2 ATQHPIGKKTACVVGGTGFVASLLVKLLLQKGYAV-----NTTVRDPDNQKKVSHLLELQ 56
Query: 143 GVFVIEGDINDAKLL-AKLFDAVAFT-------HVMHLAAQAGVRYAMQNPHS-YVHSNI 193
++ D K+ A L D ++F V H+A V +A ++P + + I
Sbjct: 57 -------ELGDLKIFRADLTDELSFEAPIAGCDFVFHVATP--VHFASEDPENDMIKPAI 107
Query: 194 AGLVTLLEACKSANPQPSIVWASSSSVYGLNE 225
G+V +++AC A ++ SS++ +N+
Sbjct: 108 QGVVNVMKACTRAKSVKRVILTSSAAAVTINQ 139
>pdb|2GAS|A Chain A, Crystal Structure Of Isoflavone Reductase
pdb|2GAS|B Chain B, Crystal Structure Of Isoflavone Reductase
Length = 307
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNH---GVFVIEG 149
+L+ G G +G H+ A K G+ L + + ++ L++N+ GV ++EG
Sbjct: 5 ILILGPTGAIGRHIVWASIKAGNPTYAL--VRKTITAANPETKEELIDNYQSLGVILLEG 62
Query: 150 DINDAKLLAKLFDAV 164
DIND + L K V
Sbjct: 63 DINDHETLVKAIKQV 77
>pdb|4B79|A Chain A, The Aeropath Project And Pseudomonas Aeruginosa
High-throughput Crystallographic Studies For Assessment
Of Potential Targets In Early Stage Drug Discovery.
pdb|4B79|B Chain B, The Aeropath Project And Pseudomonas Aeruginosa
High-throughput Crystallographic Studies For Assessment
Of Potential Targets In Early Stage Drug Discovery.
pdb|4AVY|A Chain A, The Aeropath Project And Pseudomonas Aeruginosa
High-throughput Crystallographic Studies For Assessment
Of Potential Targets In Early Stage Drug Discovery.
pdb|4AVY|B Chain B, The Aeropath Project And Pseudomonas Aeruginosa
High-throughput Crystallographic Studies For Assessment
Of Potential Targets In Early Stage Drug Discovery
Length = 242
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 11/82 (13%)
Query: 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLD-NFNNYYDPSLKKARKALLNNHGVFVIE 148
G VLVTG + +G +++ + G VV L + + + P + R+ E
Sbjct: 11 GQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHAPRHPRIRRE----------E 60
Query: 149 GDINDAKLLAKLFDAVAFTHVM 170
DI D++ L +LF+A+ V+
Sbjct: 61 LDITDSQRLQRLFEALPRLDVL 82
>pdb|3VOG|A Chain A, Catalytic Domain Of The Cellobiohydrolase, Cccel6a, From
Coprinopsis Cinerea
pdb|3VOH|A Chain A, Cccel6a Catalytic Domain Complexed With Cellobiose
pdb|3VOI|A Chain A, Cccel6a Catalytic Domain Complexed With P-Nitrophenyl
Beta-D- Cellotrioside
Length = 373
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 13/97 (13%)
Query: 51 SYLSFQSFVDSGSRYFSASWGGIQWEKHVRSSA----QIHRSGGMSVLVTGAAGFVGTHV 106
S L S+VD+G A W G W ++ SA QI++ G S + G A V +
Sbjct: 172 SALGVYSYVDAGH----AGWLG--WNANLAPSARLFAQIYKDAGRSAFIRGLATNVSNYN 225
Query: 107 SLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHG 143
+L+ R G DN++ A LL N G
Sbjct: 226 ALSATTRDPVTQGNDNYDEL---RFINALAPLLRNEG 259
>pdb|3VOJ|A Chain A, Cccel6a Catalytic Domain Mutant D164a
Length = 373
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 13/97 (13%)
Query: 51 SYLSFQSFVDSGSRYFSASWGGIQWEKHVRSSA----QIHRSGGMSVLVTGAAGFVGTHV 106
S L S+VD+G A W G W ++ SA QI++ G S + G A V +
Sbjct: 172 SALGVYSYVDAGH----AGWLG--WNANLAPSARLFAQIYKDAGRSAFIRGLATNVSNYN 225
Query: 107 SLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHG 143
+L+ R G DN++ A LL N G
Sbjct: 226 ALSATTRDPVTQGNDNYDEL---RFINALAPLLRNEG 259
>pdb|3TQF|A Chain A, Structure Of The Hpr(Ser) KinasePHOSPHATASE FROM COXIELLA
BURNETII
pdb|3TQF|B Chain B, Structure Of The Hpr(Ser) KinasePHOSPHATASE FROM COXIELLA
BURNETII
Length = 181
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 15/88 (17%)
Query: 93 VLVTGAAGFVGTHVSLALKKRG-----DGVVGLDNFNNYYDPSLKKARKALLNNHGVFVI 147
VL+TG A + +SLAL RG D V+ L NN S + G+ +I
Sbjct: 19 VLITGEANIGKSELSLALIDRGHQLVCDDVIDLKQENNQLIGSCPSVANGYILITGIGII 78
Query: 148 EGDINDAKLLAKLF--DAVAFTHVMHLA 173
+ + KLF DAV H +HL+
Sbjct: 79 D--------VPKLFGLDAVVNQHEVHLS 98
>pdb|3L4G|A Chain A, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|C Chain C, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|E Chain E, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|G Chain G, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|I Chain I, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|K Chain K, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|M Chain M, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|O Chain O, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
Length = 508
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 215 ASSSSVYGLNENVPFSEA-----DRTDQPASLYAATKKAGEEIAH-------TYNHIYG- 261
AS+ ++Y L + PF+ DR + +L A +I T H+ G
Sbjct: 331 ASARALYRLAQKKPFTPVKYFSIDRVFRNETLDATHLAEFHQIEGVVADHGLTLGHLMGV 390
Query: 262 -------LSITGLRFFTVYGPWGRPDMAYFSFTRNI 290
L IT LRF Y P+ P M FS+ + +
Sbjct: 391 LREFFTKLGITQLRFKPAYNPYTEPSMEVFSYHQGL 426
>pdb|1JN0|O Chain O, Crystal Structure Of The Non-Regulatory A4 Isoform Of
Spinach Chloroplast Glyceraldehyde-3-Phosphate
Dehydrogenase Complexed With Nadp
pdb|1JN0|A Chain A, Crystal Structure Of The Non-Regulatory A4 Isoform Of
Spinach Chloroplast Glyceraldehyde-3-Phosphate
Dehydrogenase Complexed With Nadp
pdb|1JN0|B Chain B, Crystal Structure Of The Non-Regulatory A4 Isoform Of
Spinach Chloroplast Glyceraldehyde-3-Phosphate
Dehydrogenase Complexed With Nadp
Length = 335
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 10/36 (27%)
Query: 356 RHLKVKAKKNVIEMPGNGDVP----------FTHAN 381
+HL+ AKK +I PG GD+P +THA+
Sbjct: 108 KHLQAGAKKVLITAPGKGDIPTYVVGVNEEGYTHAD 143
>pdb|1RM3|O Chain O, Crystal Structure Of Mutant T33a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM3|A Chain A, Crystal Structure Of Mutant T33a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM3|B Chain B, Crystal Structure Of Mutant T33a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
Length = 337
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 10/36 (27%)
Query: 356 RHLKVKAKKNVIEMPGNGDVP----------FTHAN 381
+HL+ AKK +I PG GD+P +THA+
Sbjct: 110 KHLQAGAKKVLITAPGKGDIPTYVVGVNEEGYTHAD 145
>pdb|1NBO|O Chain O, The Dual Coenzyme Specificity Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase Interpreted By
The Crystal Structure Of A4 Isoform Complexed With Nad
pdb|1NBO|A Chain A, The Dual Coenzyme Specificity Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase Interpreted By
The Crystal Structure Of A4 Isoform Complexed With Nad
pdb|1NBO|B Chain B, The Dual Coenzyme Specificity Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase Interpreted By
The Crystal Structure Of A4 Isoform Complexed With Nad
pdb|1RM4|O Chain O, Crystal Structure Of Recombinant Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM4|A Chain A, Crystal Structure Of Recombinant Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM4|B Chain B, Crystal Structure Of Recombinant Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|2HKI|A Chain A, Crystal Structure Of Photosynthetic
Glyceraldehyde-3-Phosphate Dehydrogenase A4 Isoform
pdb|2PKQ|P Chain P, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKQ|R Chain R, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKQ|S Chain S, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
Length = 337
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 10/36 (27%)
Query: 356 RHLKVKAKKNVIEMPGNGDVP----------FTHAN 381
+HL+ AKK +I PG GD+P +THA+
Sbjct: 110 KHLQAGAKKVLITAPGKGDIPTYVVGVNEEGYTHAD 145
>pdb|1RM5|O Chain O, Crystal Structure Of Mutant S188a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM5|A Chain A, Crystal Structure Of Mutant S188a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM5|B Chain B, Crystal Structure Of Mutant S188a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
Length = 337
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 10/36 (27%)
Query: 356 RHLKVKAKKNVIEMPGNGDVP----------FTHAN 381
+HL+ AKK +I PG GD+P +THA+
Sbjct: 110 KHLQAGAKKVLITAPGKGDIPTYVVGVNEEGYTHAD 145
>pdb|2PKR|O Chain O, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|R Chain R, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|P Chain P, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|Q Chain Q, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|A Chain A, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|B Chain B, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|C Chain C, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|D Chain D, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|H Chain H, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|I Chain I, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|L Chain L, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|M Chain M, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
Length = 365
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 10/36 (27%)
Query: 356 RHLKVKAKKNVIEMPGNGDVP----------FTHAN 381
+HL+ AKK +I PG GD+P +THA+
Sbjct: 110 KHLQAGAKKVLITAPGKGDIPTYVVGVNEEGYTHAD 145
>pdb|1KO7|A Chain A, X-Ray Structure Of The Hpr KinasePHOSPHATASE FROM
Staphylococcus Xylosus At 1.95 A Resolution
pdb|1KO7|B Chain B, X-Ray Structure Of The Hpr KinasePHOSPHATASE FROM
Staphylococcus Xylosus At 1.95 A Resolution
Length = 314
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFN 124
G+ VL+TG +G + +L L KRG +V DN
Sbjct: 144 GVGVLITGDSGIGKSETALELIKRGHRLVADDNVE 178
>pdb|3KOW|A Chain A, Crystal Structure Of Ornithine 4,5 Aminomutase Backsoaked
Complex
pdb|3KOW|B Chain B, Crystal Structure Of Ornithine 4,5 Aminomutase Backsoaked
Complex
pdb|3KOW|C Chain C, Crystal Structure Of Ornithine 4,5 Aminomutase Backsoaked
Complex
pdb|3KOW|D Chain D, Crystal Structure Of Ornithine 4,5 Aminomutase Backsoaked
Complex
pdb|3KOX|A Chain A, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With 2,4- Diaminobutyrate (Anaerobic)
pdb|3KOX|B Chain B, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With 2,4- Diaminobutyrate (Anaerobic)
pdb|3KOX|C Chain C, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With 2,4- Diaminobutyrate (Anaerobic)
pdb|3KOX|D Chain D, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With 2,4- Diaminobutyrate (Anaerobic)
pdb|3KOY|A Chain A, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With Ornithine (Aerobic)
pdb|3KOY|B Chain B, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With Ornithine (Aerobic)
pdb|3KOY|C Chain C, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With Ornithine (Aerobic)
pdb|3KOY|D Chain D, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With Ornithine (Aerobic)
pdb|3KOZ|A Chain A, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With Ornithine (Anaerobic)
pdb|3KOZ|B Chain B, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With Ornithine (Anaerobic)
pdb|3KOZ|C Chain C, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With Ornithine (Anaerobic)
pdb|3KOZ|D Chain D, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With Ornithine (Anaerobic)
pdb|3KP0|A Chain A, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With 2,4- Diaminobutyrate (Dab) (Aerobic)
pdb|3KP0|B Chain B, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With 2,4- Diaminobutyrate (Dab) (Aerobic)
pdb|3KP0|C Chain C, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With 2,4- Diaminobutyrate (Dab) (Aerobic)
pdb|3KP0|D Chain D, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With 2,4- Diaminobutyrate (Dab) (Aerobic)
pdb|3KP1|A Chain A, Crystal Structure Of Ornithine 4,5 Aminomutase (Resting
State)
pdb|3KP1|B Chain B, Crystal Structure Of Ornithine 4,5 Aminomutase (Resting
State)
pdb|3KP1|D Chain D, Crystal Structure Of Ornithine 4,5 Aminomutase (Resting
State)
pdb|3KP1|C Chain C, Crystal Structure Of Ornithine 4,5 Aminomutase (Resting
State)
Length = 763
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 71/177 (40%), Gaps = 34/177 (19%)
Query: 58 FVDSGSRYFSASWGGIQWEKHVRSSAQIHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGV 117
F D R A+W G +R++ Q H G L+ G +G V + K+
Sbjct: 87 FEDDIRRMRMAAWHGADHIMVIRTAGQSHYDG----LIEGTPQGIGG-VPITRKQ----- 136
Query: 118 VGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAG 177
++ RKAL +IE ++ VA + + A+ G
Sbjct: 137 -------------VRAQRKAL------DLIEEEVGRPINYHSYVSGVAGPDIAVMFAEEG 177
Query: 178 VRYAMQNP-HSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGL-NENVPFSEA 232
V A Q+P ++ ++ NI + + ++AC+S + + WA + + G N N EA
Sbjct: 178 VNGAHQDPQYNVLYRNINMIRSFIDACES---KTIMAWADMAQIDGAHNANATAREA 231
>pdb|3K2B|A Chain A, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|B Chain B, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|C Chain C, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|D Chain D, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|E Chain E, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|F Chain F, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|G Chain G, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|H Chain H, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|O Chain O, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|Q Chain Q, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3QV1|A Chain A, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|B Chain B, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|C Chain C, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|D Chain D, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|E Chain E, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|F Chain F, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3RVD|A Chain A, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|B Chain B, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|C Chain C, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|D Chain D, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|E Chain E, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|F Chain F, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|G Chain G, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|H Chain H, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|O Chain O, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|Q Chain Q, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana
Length = 337
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 356 RHLKVKAKKNVIEMPGNGDVP 376
+H++ AKK +I PG GD+P
Sbjct: 111 KHIEAGAKKVIITAPGKGDIP 131
>pdb|3N0Q|A Chain A, Crystal Structure Of A Putative Aromatic-Ring
Hydroxylating Dioxygenase (Tm1040_3219) From
Silicibacter Sp. Tm1040 At 1 Resolution
Length = 409
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 375 VPFTHANISSAQKEFG-YRPTTDLQTGLKKFVRWYLSYYGYNRG 417
V F I+S E G Y PT ++G+ +FV WYLS N G
Sbjct: 361 VEFNQXGINSPAYEPGPYSPTQ--ESGVLQFVEWYLSTLKRNSG 402
>pdb|1V3T|A Chain A, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase
pdb|1V3T|B Chain B, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase
pdb|1V3U|A Chain A, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase In
Apo Form
pdb|1V3U|B Chain B, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase In
Apo Form
pdb|1V3V|A Chain A, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase
Complexed With Nadp And 15-Oxo-Pge2
pdb|1V3V|B Chain B, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase
Complexed With Nadp And 15-Oxo-Pge2
pdb|2DM6|A Chain A, Crystal Structure Of Anti-Configuration Of Indomethacin
And Leukotriene B4 12-Hydroxydehydrogenase15-Oxo-
Prostaglandin 13-Reductase Complex
pdb|2DM6|B Chain B, Crystal Structure Of Anti-Configuration Of Indomethacin
And Leukotriene B4 12-Hydroxydehydrogenase15-Oxo-
Prostaglandin 13-Reductase Complex
Length = 333
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVG 119
GG +VLV+ AAG VG+ V K +G VVG
Sbjct: 145 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVG 175
>pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
pdb|1UJM|B Chain B, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
Length = 342
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 18/30 (60%)
Query: 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVG 119
G VLVTGA GFV +HV L + G V G
Sbjct: 11 GSLVLVTGANGFVASHVVEQLLEHGYKVRG 40
>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1Y1P|B Chain B, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1ZZE|A Chain A, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
pdb|1ZZE|B Chain B, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
Length = 342
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 18/30 (60%)
Query: 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVG 119
G VLVTGA GFV +HV L + G V G
Sbjct: 11 GSLVLVTGANGFVASHVVEQLLEHGYKVRG 40
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,126,709
Number of Sequences: 62578
Number of extensions: 549607
Number of successful extensions: 1689
Number of sequences better than 100.0: 111
Number of HSP's better than 100.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 1454
Number of HSP's gapped (non-prelim): 124
length of query: 421
length of database: 14,973,337
effective HSP length: 101
effective length of query: 320
effective length of database: 8,652,959
effective search space: 2768946880
effective search space used: 2768946880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)