BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043172
(564 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 104/238 (43%), Gaps = 17/238 (7%)
Query: 268 VQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRR 327
V F + Q + A D+ ++ + +G+ +Q++ VR +F PDG A
Sbjct: 350 VAFSPDGQTIASASDDKTVKLWNRNGQL---LQTLTGHSSSVRGVAFSPDGQTIASASDD 406
Query: 328 KFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIG 387
K ++ L + L G S+ SPD IA ++ + L + + +L+
Sbjct: 407 K---TVKLWNRNGQLLQTLTGHSS-SVWGVAFSPDDQTIASASDDKTVKLWN-RNGQLLQ 461
Query: 388 TLK-MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPD 446
TL + +VR +AF+ DG+ + S+ D V W+ + + G A SPD
Sbjct: 462 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAF--SPD 519
Query: 447 GTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMK 504
G A+ SD V ++NR L ++T+ ++ V + F+ D Q +A S+ K
Sbjct: 520 GQTIASASDDKTVKLWNRNGQL------LQTLTGHSSSVWGVAFSPDGQTIASASSDK 571
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 74/306 (24%), Positives = 126/306 (41%), Gaps = 43/306 (14%)
Query: 265 INSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIA 324
+ V F + Q + A D+ ++ + +G+ +Q++ V +F PDG A
Sbjct: 101 VRGVAFSPDGQTIASASDDKTVKLWNRNGQL---LQTLTGHSSSVWGVAFSPDGQTIASA 157
Query: 325 GRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKE 384
K ++ L + L G S+ SPD IA ++ + L + + +
Sbjct: 158 SDDK---TVKLWNRNGQLLQTLTGHSS-SVWGVAFSPDGQTIASASDDKTVKLWN-RNGQ 212
Query: 385 LIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCT 443
L+ TL + +VR +AF+ DG+ + S+ D V W+ + +NG A
Sbjct: 213 LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAF-- 270
Query: 444 SPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTM 503
PDG A+ SD V ++NR L ++T+ ++ V + F+ D Q +A S
Sbjct: 271 RPDGQTIASASDDKTVKLWNRNGQL------LQTLTGHSSSVWGVAFSPDGQTIASASDD 324
Query: 504 KKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLD----------FSPGGGFMAVGNAAGKV 553
K ++KL W NRN Q+ + L FSP G +A + V
Sbjct: 325 K--TVKL-----------W---NRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTV 368
Query: 554 FLYKLN 559
L+ N
Sbjct: 369 KLWNRN 374
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 102/238 (42%), Gaps = 17/238 (7%)
Query: 265 INSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIA 324
+N V F + Q + A D+ ++ + +G+ +Q++ V +F PDG A
Sbjct: 265 VNGVAFRPDGQTIASASDDKTVKLWNRNGQL---LQTLTGHSSSVWGVAFSPDGQTIASA 321
Query: 325 GRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKE 384
K ++ L + L G S+ SPD IA ++ + L + + +
Sbjct: 322 SDDK---TVKLWNRNGQHLQTLTGHSS-SVWGVAFSPDGQTIASASDDKTVKLWN-RNGQ 376
Query: 385 LIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCT 443
L+ TL + +VR +AF+ DG+ + S+ D V W+ + + G A
Sbjct: 377 LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAF-- 434
Query: 444 SPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICS 501
SPD A+ SD V ++NR L ++T+ ++ V + F+ D Q +A S
Sbjct: 435 SPDDQTIASASDDKTVKLWNRNGQL------LQTLTGHSSSVRGVAFSPDGQTIASAS 486
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 84/198 (42%), Gaps = 14/198 (7%)
Query: 305 EDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSS 364
VR +F PDG A K ++ L + L G S+ SPD
Sbjct: 15 HSSSVRGVAFSPDGQTIASASDDK---TVKLWNRNGQLLQTLTGHSS-SVWGVAFSPDGQ 70
Query: 365 VIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRT 423
IA ++ + L + + +L+ TL + +VR +AF+ DG+ + S+ D V W+
Sbjct: 71 TIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG 129
Query: 424 RTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTT 483
+ + G A SPDG A+ SD V ++NR L ++T+ ++
Sbjct: 130 QLLQTLTGHSSSVWGVAF--SPDGQTIASASDDKTVKLWNRNGQL------LQTLTGHSS 181
Query: 484 KVDFMKFNNDAQILAICS 501
V + F+ D Q +A S
Sbjct: 182 SVWGVAFSPDGQTIASAS 199
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 68/154 (44%), Gaps = 9/154 (5%)
Query: 268 VQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRR 327
V F + Q + A D+ ++ + +G+ +Q++ VR +F PDG A
Sbjct: 432 VAFSPDDQTIASASDDKTVKLWNRNGQL---LQTLTGHSSSVRGVAFSPDGQTIASASDD 488
Query: 328 KFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIG 387
K ++ L + L G S+ SPD IA ++ + L + + +L+
Sbjct: 489 K---TVKLWNRNGQLLQTLTGHSS-SVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQ 543
Query: 388 TLK-MNGTVRSLAFADDGKQLLSSGGDGQVYHWD 420
TL + +V +AF+ DG+ + S+ D V W+
Sbjct: 544 TLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 97/230 (42%), Gaps = 32/230 (13%)
Query: 249 YSRLIDANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCP 308
Y R + +D + SV + A +++ D+ ++ + I G+ + ++ +
Sbjct: 100 YQRFVGHKSD------VMSVDIDKKASMIISGSRDKTIKVWTIKGQ---CLATLLGHNDW 150
Query: 309 VRKASFLP-----DGSQAII-AGRRKFF--YSLDLVKAKADKIGPLVGREEKSLEFFEVS 360
V + +P D S II AG K ++L+ + +AD IG ++ S
Sbjct: 151 VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIG-----HNSNINTLTAS 205
Query: 361 PDSSVIAFVGNEGYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSGGDG------ 414
PD ++IA G +G I+L + K+ + TL V SLAF+ + L ++ G
Sbjct: 206 PDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSL 265
Query: 415 --QVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVY 462
Q DLR + A E + +L S DG AG ++ V+
Sbjct: 266 DPQYLVDDLRPEFAGYSAAAEP--HAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 79/202 (39%), Gaps = 23/202 (11%)
Query: 276 LLLVAGLDRRLRFFQIDGK--------RNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRR 327
LLL A D+ L +++ G R+ K S ++DC + DG+ A+ A
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC-----TLTADGAYALSASWD 86
Query: 328 KFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIG 387
K D+ A + VG + + ++ +S+I + I + + K + L
Sbjct: 87 KTLRLWDV--ATGETYQRFVGHKSDVMSV-DIDKKASMIISGSRDKTIKVWTIKGQCLAT 143
Query: 388 TLKMNGTVRSLAFA------DDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTAL 441
L N V + DD ++S+G D V W+L + N L
Sbjct: 144 LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNS-NINTL 202
Query: 442 CTSPDGTFFAAGSDSGIVNVYN 463
SPDGT A+ G + ++N
Sbjct: 203 TASPDGTLIASAGKDGEIMLWN 224
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 75/202 (37%), Gaps = 7/202 (3%)
Query: 259 ESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCP-VRKASFLPD 317
E + ++ V N + A D LR + + +N + Q FL V +F PD
Sbjct: 64 EGHSAFVSDVALSNNGNFAVSASWDHSLRLWNL---QNGQCQYKFLGHTKDVLSVAFSPD 120
Query: 318 GSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILL 377
Q + GR ++ + + S F S D+ VI G + + +
Sbjct: 121 NRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKV 180
Query: 378 VSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCI 436
T L+ LK V S+ + DG SS DG WDL + I
Sbjct: 181 WDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPI 240
Query: 437 NGTALCTSPDGTFFAAGSDSGI 458
N +C SP+ + A ++ GI
Sbjct: 241 N--QICFSPNRYWMCAATEKGI 260
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Query: 395 VRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIH---RAVDEGCINGTALCTSPDGTFFA 451
V S+AF+ D +Q++S G D + W+++ C+H R ++ S D
Sbjct: 112 VLSVAFSPDNRQIVSGGRDNALRVWNVKGE-CMHTLSRGAHTDWVSCVRFSPSLDAPVIV 170
Query: 452 AGSDSGIVNVYN 463
+G +V V++
Sbjct: 171 SGGWDNLVKVWD 182
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 352 KSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLKMNGT-VRSLAFADDGKQLLSS 410
+SL F SPDS ++ ++GYI + + L GTL + + V ++AF D +SS
Sbjct: 210 RSLTF---SPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSS 266
Query: 411 GGDGQVYHWDLRTRTCIHRAVDE 433
D V WD+ TRTC+H D
Sbjct: 267 SSDKSVKVWDVGTRTCVHTFFDH 289
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 59/155 (38%), Gaps = 17/155 (10%)
Query: 409 SSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFL 468
SS D + WDL I +++D G ++ L SPD + A G+ G VN++ +
Sbjct: 97 SSSLDAHIRLWDLENGKQI-KSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVES-- 153
Query: 469 GGKRKPIKTIENLTTKVDFM---KFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPA 525
G K + T + + K+ I I + + KL+H +
Sbjct: 154 GKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMP----- 208
Query: 526 NRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNH 560
R L FSP + + G + +Y + H
Sbjct: 209 ------IRSLTFSPDSQLLVTASDDGYIKIYDVQH 237
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 71/297 (23%), Positives = 128/297 (43%), Gaps = 59/297 (19%)
Query: 221 TEAVDDILRT----DEDLVVKSSAKLSPGLLEYSRLIDANADESSTGPINSVQFHRNAQL 276
T ++DD+++ DE L ++ S LE +L + D S T PI +
Sbjct: 53 TGSLDDLVKVWKWRDERLDLQWS-------LEGHQLGVVSVDISHTLPIAAS-------- 97
Query: 277 LLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLV 336
+ LD +R + ++ + +I+SI +F PD SQ + G
Sbjct: 98 ---SSLDAHIRLWDLENGK--QIKSIDAGPVDAWTLAFSPD-SQYLATGTHV-------- 143
Query: 337 KAKADKIGPLVGREEKSLEF-------FEVSPDSSVIAFVGNEGYILLVSSKTKELIGTL 389
K + G G++E SL+ SPD +A +G I + T +L+ TL
Sbjct: 144 -GKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTL 202
Query: 390 KMNGT-VRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTA-----LCT 443
+ + +RSL F+ D + L+++ DG + +D++ A G ++G A +
Sbjct: 203 EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQ------HANLAGTLSGHASWVLNVAF 256
Query: 444 SPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFN-NDAQILAI 499
PD T F + S V V++ G R + T + +V +K+N N ++I+++
Sbjct: 257 CPDDTHFVSSSSDKSVKVWDV-----GTRTCVHTFFDHQDQVWGVKYNGNGSKIVSV 308
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 59/154 (38%), Gaps = 4/154 (2%)
Query: 309 VRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAF 368
+R LPDG I+ G DL A +I + + +SPDS V
Sbjct: 100 IRSCKLLPDGCTLIVGGEASTLSIWDLA-APTPRIKAELTSSAPACYALAISPDSKVCFS 158
Query: 369 VGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCI 427
++G I + + L+ + + ++DG +L + G D V WDLR +
Sbjct: 159 CCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQL 218
Query: 428 HRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNV 461
+ I C P G + A G +S V V
Sbjct: 219 QQHDFTSQIFSLGYC--PTGEWLAVGMESSNVEV 250
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 77/202 (38%), Gaps = 8/202 (3%)
Query: 265 INSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIA 324
I ++ + +++LLL A D +L + D K+ +I L V ++ P G+
Sbjct: 58 IYAMHWGTDSRLLLSASQDGKLIIW--DSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACG 115
Query: 325 GRRKF--FYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKT 382
G Y+L + L G L D+ ++ G+ L
Sbjct: 116 GLDNICSIYNLKTREGNVRVSRELAG-HTGYLSCCRFLDDNQIVTSSGDTTCALWDIETG 174
Query: 383 KELIGTLKMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAV-DEGCINGTAL 441
++ G V SL+ A D + +S D WD+R C E IN A+
Sbjct: 175 QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDIN--AI 232
Query: 442 CTSPDGTFFAAGSDSGIVNVYN 463
C P+G FA GSD +++
Sbjct: 233 CFFPNGNAFATGSDDATCRLFD 254
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
Query: 395 VRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGS 454
+ ++ + D + LLS+ DG++ WD T +H A+ +P G + A G
Sbjct: 58 IYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH-AIPLRSSWVMTCAYAPSGNYVACGG 116
Query: 455 DSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQIL 497
I ++YN + G R + + T + +F +D QI+
Sbjct: 117 LDNICSIYNLKTREGNVRVS-RELAGHTGYLSCCRFLDDNQIV 158
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 96/230 (41%), Gaps = 32/230 (13%)
Query: 249 YSRLIDANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCP 308
Y R + +D + SV + A +++ D+ ++ + I G+ + ++ +
Sbjct: 100 YQRFVGHKSD------VMSVDIDKKASMIISGSRDKTIKVWTIKGQ---CLATLLGHNDW 150
Query: 309 VRKASFLP-----DGSQAII-AGRRKFF--YSLDLVKAKADKIGPLVGREEKSLEFFEVS 360
V + +P D S II AG K ++L+ + +AD IG ++ S
Sbjct: 151 VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIG-----HNSNINTLTAS 205
Query: 361 PDSSVIAFVGNEGYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSGGDG------ 414
PD ++IA G +G I+L + K+ + TL V SLAF+ + L ++ G
Sbjct: 206 PDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSL 265
Query: 415 --QVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVY 462
Q DLR + E + +L S DG AG ++ V+
Sbjct: 266 DPQYLVDDLRPEFAGYSKAAEP--HAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 79/202 (39%), Gaps = 23/202 (11%)
Query: 276 LLLVAGLDRRLRFFQIDGK--------RNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRR 327
LLL A D+ L +++ G R+ K S ++DC + DG+ A+ A
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC-----TLTADGAYALSASWD 86
Query: 328 KFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIG 387
K D+ A + VG + + ++ +S+I + I + + K + L
Sbjct: 87 KTLRLWDV--ATGETYQRFVGHKSDVMSV-DIDKKASMIISGSRDKTIKVWTIKGQCLAT 143
Query: 388 TLKMNGTVRSLAFA------DDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTAL 441
L N V + DD ++S+G D V W+L + N L
Sbjct: 144 LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNS-NINTL 202
Query: 442 CTSPDGTFFAAGSDSGIVNVYN 463
SPDGT A+ G + ++N
Sbjct: 203 TASPDGTLIASAGKDGEIMLWN 224
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 96/230 (41%), Gaps = 32/230 (13%)
Query: 249 YSRLIDANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCP 308
Y R + +D + SV + A +++ D+ ++ + I G+ + ++ +
Sbjct: 100 YQRFVGHKSD------VMSVDIDKKASMIISGSRDKTIKVWTIKGQ---CLATLLGHNDW 150
Query: 309 VRKASFLP-----DGSQAII-AGRRKFF--YSLDLVKAKADKIGPLVGREEKSLEFFEVS 360
V + +P D S II AG K ++L+ + +AD IG ++ S
Sbjct: 151 VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIG-----HNSNINTLTAS 205
Query: 361 PDSSVIAFVGNEGYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSGGDG------ 414
PD ++IA G +G I+L + K+ + TL V SLAF+ + L ++ G
Sbjct: 206 PDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSL 265
Query: 415 --QVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVY 462
Q DLR + E + +L S DG AG ++ V+
Sbjct: 266 DPQYLVDDLRPEFAGYSKAAEP--HAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 79/202 (39%), Gaps = 23/202 (11%)
Query: 276 LLLVAGLDRRLRFFQIDGK--------RNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRR 327
LLL A D+ L +++ G R+ K S ++DC + DG+ A+ A
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC-----TLTADGAYALSASWD 86
Query: 328 KFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIG 387
K D+ A + VG + + ++ +S+I + I + + K + L
Sbjct: 87 KTLRLWDV--ATGETYQRFVGHKSDVMSV-DIDKKASMIISGSRDKTIKVWTIKGQCLAT 143
Query: 388 TLKMNGTVRSLAFA------DDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTAL 441
L N V + DD ++S+G D V W+L + N L
Sbjct: 144 LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNS-NINTL 202
Query: 442 CTSPDGTFFAAGSDSGIVNVYN 463
SPDGT A+ G + ++N
Sbjct: 203 TASPDGTLIASAGKDGEIMLWN 224
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 77/202 (38%), Gaps = 8/202 (3%)
Query: 265 INSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIA 324
I ++ + +++LLL A D +L + D K+ +I L V ++ P G+
Sbjct: 58 IYAMHWGTDSRLLLSASQDGKLIIW--DSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACG 115
Query: 325 GRRKF--FYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKT 382
G Y+L + L G L D+ ++ G+ L
Sbjct: 116 GLDNICSIYNLKTREGNVRVSRELAG-HTGYLSCCRFLDDNQIVTSSGDTTCALWDIETG 174
Query: 383 KELIGTLKMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAV-DEGCINGTAL 441
++ G V SL+ A D + +S D WD+R C E IN A+
Sbjct: 175 QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDIN--AI 232
Query: 442 CTSPDGTFFAAGSDSGIVNVYN 463
C P+G FA GSD +++
Sbjct: 233 CFFPNGNAFATGSDDATCRLFD 254
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
Query: 395 VRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGS 454
+ ++ + D + LLS+ DG++ WD T +H A+ +P G + A G
Sbjct: 58 IYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH-AIPLRSSWVMTCAYAPSGNYVACGG 116
Query: 455 DSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQIL 497
I ++YN + G R + + T + +F +D QI+
Sbjct: 117 LDNICSIYNLKTREGNVRVS-RELAGHTGYLSCCRFLDDNQIV 158
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 96/230 (41%), Gaps = 32/230 (13%)
Query: 249 YSRLIDANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCP 308
Y R + +D + SV + A +++ D+ ++ + I G+ + ++ +
Sbjct: 100 YQRFVGHKSD------VMSVDIDKKASMIISGSRDKTIKVWTIKGQ---CLATLLGHNDW 150
Query: 309 VRKASFLP-----DGSQAII-AGRRKFF--YSLDLVKAKADKIGPLVGREEKSLEFFEVS 360
V + +P D S II AG K ++L+ + +AD IG ++ S
Sbjct: 151 VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIG-----HNSNINTLTAS 205
Query: 361 PDSSVIAFVGNEGYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSGGDG------ 414
PD ++IA G +G I+L + K+ + TL V SLAF+ + L ++ G
Sbjct: 206 PDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSL 265
Query: 415 --QVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVY 462
Q DLR + E + +L S DG AG ++ V+
Sbjct: 266 DPQYLVDDLRPEFAGYSKAAEP--HAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 79/202 (39%), Gaps = 23/202 (11%)
Query: 276 LLLVAGLDRRLRFFQIDGK--------RNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRR 327
LLL A D+ L +++ G R+ K S ++DC + DG+ A+ A
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC-----TLTADGAYALSASWD 86
Query: 328 KFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIG 387
K D+ A + VG + + ++ +S+I + I + + K + L
Sbjct: 87 KTLRLWDV--ATGETYQRFVGHKSDVMSV-DIDKKASMIISGSRDKTIKVWTIKGQCLAT 143
Query: 388 TLKMNGTVRSLAFA------DDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTAL 441
L N V + DD ++S+G D V W+L + N L
Sbjct: 144 LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNS-NINTL 202
Query: 442 CTSPDGTFFAAGSDSGIVNVYN 463
SPDGT A+ G + ++N
Sbjct: 203 TASPDGTLIASAGKDGEIMLWN 224
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 96/230 (41%), Gaps = 32/230 (13%)
Query: 249 YSRLIDANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCP 308
Y R + +D + SV + A +++ D+ ++ + I G+ + ++ +
Sbjct: 94 YQRFVGHKSD------VMSVDIDKKASMIISGSRDKTIKVWTIKGQ---CLATLLGHNDW 144
Query: 309 VRKASFLP-----DGSQAII-AGRRKFF--YSLDLVKAKADKIGPLVGREEKSLEFFEVS 360
V + +P D S II AG K ++L+ + +AD IG ++ S
Sbjct: 145 VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIG-----HNSNINTLTAS 199
Query: 361 PDSSVIAFVGNEGYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSGGDG------ 414
PD ++IA G +G I+L + K+ + TL V SLAF+ + L ++ G
Sbjct: 200 PDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSL 259
Query: 415 --QVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVY 462
Q DLR + E + +L S DG AG ++ V+
Sbjct: 260 DPQYLVDDLRPEFAGYSKAAEP--HAVSLAWSADGQTLFAGYTDNVIRVW 307
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 79/202 (39%), Gaps = 23/202 (11%)
Query: 276 LLLVAGLDRRLRFFQIDGK--------RNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRR 327
LLL A D+ L +++ G R+ K S ++DC + DG+ A+ A
Sbjct: 26 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC-----TLTADGAYALSASWD 80
Query: 328 KFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIG 387
K D+ A + VG + + ++ +S+I + I + + K + L
Sbjct: 81 KTLRLWDV--ATGETYQRFVGHKSDVMSV-DIDKKASMIISGSRDKTIKVWTIKGQCLAT 137
Query: 388 TLKMNGTVRSLAFA------DDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTAL 441
L N V + DD ++S+G D V W+L + N L
Sbjct: 138 LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNS-NINTL 196
Query: 442 CTSPDGTFFAAGSDSGIVNVYN 463
SPDGT A+ G + ++N
Sbjct: 197 TASPDGTLIASAGKDGEIMLWN 218
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 6/109 (5%)
Query: 360 SPDSSVIAFVGNEGYILLVSSKTKELIGTLKMN-GTVRSLAFADDGKQLLSSGGDGQVYH 418
SPD +A + I + + ++++ L+ + + SL + G +L+S GD V
Sbjct: 132 SPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRI 191
Query: 419 WDLRTRTC-IHRAVDEGCINGTALCTSP-DGTFFAAGSDSGIVNVYNRQ 465
WDLRT C + ++++G T + SP DG + AAGS V V++ +
Sbjct: 192 WDLRTGQCSLTLSIEDGV---TTVAVSPGDGKYIAAGSLDRAVRVWDSE 237
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 72/179 (40%), Gaps = 15/179 (8%)
Query: 253 IDANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKA 312
++ ++ SS I SV F + + L DR +R + I+ ++ I +D +
Sbjct: 114 LNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQD--IYSL 171
Query: 313 SFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSP-DSSVIAFVGN 371
+ P G + + + DL + L E + VSP D IA
Sbjct: 172 DYFPSGDKLVSGSGDRTVRIWDLRTGQCS----LTLSIEDGVTTVAVSPGDGKYIAAGSL 227
Query: 372 EGYILLVSSKTKELIGTLKM---NGT-----VRSLAFADDGKQLLSSGGDGQVYHWDLR 422
+ + + S+T L+ L +GT V S+ F DG+ ++S D V W+L+
Sbjct: 228 DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQ 286
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 77/202 (38%), Gaps = 8/202 (3%)
Query: 265 INSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIA 324
I ++ + +++LL+ A D +L + D K+ +I L V ++ P G+
Sbjct: 58 IYAMHWGTDSRLLVSASQDGKLIIW--DSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACG 115
Query: 325 GRRKF--FYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKT 382
G Y+L + L G L D+ ++ G+ L
Sbjct: 116 GLDNICSIYNLKTREGNVRVSRELAG-HTGYLSCCRFLDDNQIVTSSGDTTCALWDIETG 174
Query: 383 KELIGTLKMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAV-DEGCINGTAL 441
++ G V SL+ A D + +S D WD+R C E IN A+
Sbjct: 175 QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDIN--AI 232
Query: 442 CTSPDGTFFAAGSDSGIVNVYN 463
C P+G FA GSD +++
Sbjct: 233 CFFPNGNAFATGSDDATCRLFD 254
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
Query: 395 VRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGS 454
+ ++ + D + L+S+ DG++ WD T +H A+ +P G + A G
Sbjct: 58 IYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVH-AIPLRSSWVMTCAYAPSGNYVACGG 116
Query: 455 DSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQIL 497
I ++YN + G R + + T + +F +D QI+
Sbjct: 117 LDNICSIYNLKTREGNVRVS-RELAGHTGYLSCCRFLDDNQIV 158
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 77/202 (38%), Gaps = 8/202 (3%)
Query: 265 INSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIA 324
I ++ + +++LL+ A D +L + D K+ +I L V ++ P G+
Sbjct: 58 IYAMHWGTDSRLLVSASQDGKLIIW--DSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACG 115
Query: 325 GRRKF--FYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKT 382
G Y+L + L G L D+ ++ G+ L
Sbjct: 116 GLDNICSIYNLKTREGNVRVSRELAG-HTGYLSCCRFLDDNQIVTSSGDTTCALWDIETG 174
Query: 383 KELIGTLKMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAV-DEGCINGTAL 441
++ G V SL+ A D + +S D WD+R C E IN A+
Sbjct: 175 QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDIN--AI 232
Query: 442 CTSPDGTFFAAGSDSGIVNVYN 463
C P+G FA GSD +++
Sbjct: 233 CFFPNGNAFATGSDDATCRLFD 254
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
Query: 395 VRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGS 454
+ ++ + D + L+S+ DG++ WD T +H A+ +P G + A G
Sbjct: 58 IYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVH-AIPLRSSWVMTCAYAPSGNYVACGG 116
Query: 455 DSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQIL 497
I ++YN + G R + + T + +F +D QI+
Sbjct: 117 LDNICSIYNLKTREGNVRVS-RELAGHTGYLSCCRFLDDNQIV 158
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 77/202 (38%), Gaps = 8/202 (3%)
Query: 265 INSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIA 324
I ++ + +++LL+ A D +L + D K+ +I L V ++ P G+
Sbjct: 69 IYAMHWGTDSRLLVSASQDGKLIIW--DSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACG 126
Query: 325 GRRKF--FYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKT 382
G Y+L + L G L D+ ++ G+ L
Sbjct: 127 GLDNICSIYNLKTREGNVRVSRELAG-HTGYLSCCRFLDDNQIVTSSGDTTCALWDIETG 185
Query: 383 KELIGTLKMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAV-DEGCINGTAL 441
++ G V SL+ A D + +S D WD+R C E IN A+
Sbjct: 186 QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDIN--AI 243
Query: 442 CTSPDGTFFAAGSDSGIVNVYN 463
C P+G FA GSD +++
Sbjct: 244 CFFPNGNAFATGSDDATCRLFD 265
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
Query: 395 VRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGS 454
+ ++ + D + L+S+ DG++ WD T +H A+ +P G + A G
Sbjct: 69 IYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVH-AIPLRSSWVMTCAYAPSGNYVACGG 127
Query: 455 DSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQIL 497
I ++YN + G R + + T + +F +D QI+
Sbjct: 128 LDNICSIYNLKTREGNVRVS-RELAGHTGYLSCCRFLDDNQIV 169
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 8/115 (6%)
Query: 388 TLKMNGT-VRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPD 446
TLK +G V + + D ++++SS DG+V WD T H AV C A +P
Sbjct: 59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH-AVTMPCTWVMACAYAPS 117
Query: 447 GTFFAAGSDSGIVNVY----NRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQIL 497
G A G +VY ++ E + K+K + N + F N+D QIL
Sbjct: 118 GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFT--NSDMQIL 170
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 398 LAFADDGKQLLSSGGDGQVYHWDLRTRTCIHR-AVDEGCINGTALCTSPDGTFFAAGSDS 456
LA ++ G +S G D + WD+R+ C+ E +N P G FA+GSD
Sbjct: 204 LAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRY--YPSGDAFASGSDD 261
Query: 457 GIVNVYN 463
+Y+
Sbjct: 262 ATCRLYD 268
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 102/249 (40%), Gaps = 38/249 (15%)
Query: 278 LVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRR---KFFYSLD 334
+ + D+ LR + D + T + V +F PD Q + AG K + L
Sbjct: 92 ISSSWDKTLRLW--DLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG 149
Query: 335 LVK-AKADK-----------IGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKT 382
K + A+K P++ K V P + A VG +G L V +
Sbjct: 150 ECKFSSAEKENHSDWVSCVRYSPIMKSANK------VQPFAPYFASVGWDGR-LKVWNTN 202
Query: 383 KELIGTLKMN-GTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEG-CINGTA 440
++ T K + V L+ + +GK + + G D ++ WD+ T R D G IN A
Sbjct: 203 FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIA 262
Query: 441 LCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIE-NLTTKVDFMKFNNDAQILAI 499
+P + A G+D G V ++N + + P+ TIE TK + K N
Sbjct: 263 F--NPKLQWVAVGTDQG-VKIFN---LMTQSKAPVCTIEAEPITKAEGQKGKNPQ----- 311
Query: 500 CSTMKKNSL 508
C+++ N+L
Sbjct: 312 CTSLAWNAL 320
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 17/89 (19%)
Query: 353 SLEFFEVSPDSSVIAFVGNE---GYILLVSSKTKELIGTLKM--------------NGTV 395
S+ + SP S++A + G I L ++ E IG+L + + V
Sbjct: 245 SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWV 304
Query: 396 RSLAFADDGKQLLSSGGDGQVYHWDLRTR 424
SL+F D G+ L S+G DG++ WD++T+
Sbjct: 305 MSLSFNDSGETLCSAGWDGKLRFWDVKTK 333
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 17/89 (19%)
Query: 353 SLEFFEVSPDSSVIAFVGNE---GYILLVSSKTKELIGTLKM--------------NGTV 395
S+ + SP S++A + G I L ++ E IG+L + + V
Sbjct: 235 SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWV 294
Query: 396 RSLAFADDGKQLLSSGGDGQVYHWDLRTR 424
SL+F D G+ L S+G DG++ WD++T+
Sbjct: 295 MSLSFNDSGETLCSAGWDGKLRFWDVKTK 323
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 91/212 (42%), Gaps = 20/212 (9%)
Query: 360 SPDSSVIAFVGNEGYILLVSSKTKELIGTLKMN-GTVRSLAFADDGKQLLSSGGDGQVYH 418
S D IA G + + + ++T E + +K + V AF+ D + + D +V
Sbjct: 624 SQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKI 683
Query: 419 WDLRTRTCIHRAVDEGC--INGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIK 476
WD T +H DE +N + A GS+ + +++ + ++
Sbjct: 684 WDSATGKLVH-TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ-----KECRN 737
Query: 477 TIENLTTKVDFMKFNNDAQILAICS---TMK------KNSLKLIHIPSYNVFSNWPPANR 527
T+ T V+ +F+ D ++LA CS T++ N K I++ + + S PP +
Sbjct: 738 TMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDV 797
Query: 528 NLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLN 559
+ +C +S G + V A KV L+ ++
Sbjct: 798 EV-IVKCCSWSADGDKIIVA-AKNKVLLFDIH 827
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 393 GTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDE-GCINGTALCTSPDGTFFA 451
GTV S A + D + S+ D W + +H GC+ +A S DG A
Sbjct: 1086 GTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAF--SLDGILLA 1143
Query: 452 AGSDSGIVNVYN 463
G D+G + ++N
Sbjct: 1144 TGDDNGEIRIWN 1155
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 37/201 (18%), Positives = 85/201 (42%), Gaps = 22/201 (10%)
Query: 249 YSRLIDANADES------STGPINSVQFHRNAQLLLVAGLDRRLRFFQI---DGKRNTKI 299
+ +L D N E T +N +F + +LL D LR + + + +++ +
Sbjct: 724 FLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINV 783
Query: 300 QSIFL--EDCP------VRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREE 351
+ FL ED P V+ S+ DG + I+A + K D+ + + +
Sbjct: 784 KRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLL-FDI--HTSGLLAEIHTGHH 840
Query: 352 KSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLKMN-GTVRSLAFADDGKQLLSS 410
++++ + SP + ++ + L + ++ + + + V + F+ DG L++
Sbjct: 841 STIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTA 900
Query: 411 GGDGQVYHWDLRTRTCIHRAV 431
D + W+ + + C + A+
Sbjct: 901 SDDQTIRVWETK-KVCKNSAI 920
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Query: 392 NGTVRSLAFADDGKQLLSSGGDGQVYHWDLR----TRTCIHRAVDEGCING----TALCT 443
NG VR AF+ DG L + +G++ W++ +C +V+EG T +C
Sbjct: 1127 NGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCF 1186
Query: 444 SPDG-TFFAAG 453
SPD T +AG
Sbjct: 1187 SPDSKTLVSAG 1197
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 93/230 (40%), Gaps = 32/230 (13%)
Query: 249 YSRLIDANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCP 308
Y R + +D + SV + A ++ D+ ++ + I G+ + ++ +
Sbjct: 100 YQRFVGHKSD------VXSVDIDKKASXIISGSRDKTIKVWTIKGQ---CLATLLGHNDW 150
Query: 309 VRKASFLP-----DGSQAII-AGRRKFF--YSLDLVKAKADKIGPLVGREEKSLEFFEVS 360
V + +P D S II AG K ++L+ + +AD IG ++ S
Sbjct: 151 VSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIG-----HNSNINTLTAS 205
Query: 361 PDSSVIAFVGNEGYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSGGDG------ 414
PD ++IA G +G I L + K+ TL V SLAF+ + L ++ G
Sbjct: 206 PDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSL 265
Query: 415 --QVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVY 462
Q DLR + E + +L S DG AG ++ V+
Sbjct: 266 DPQYLVDDLRPEFAGYSKAAEP--HAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 78/202 (38%), Gaps = 23/202 (11%)
Query: 276 LLLVAGLDRRLRFFQIDGK--------RNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRR 327
LLL A D+ L +++ G R+ K S ++DC + DG+ A+ A
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC-----TLTADGAYALSASWD 86
Query: 328 KFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIG 387
K D+ A + VG + + ++ +S I + I + + K + L
Sbjct: 87 KTLRLWDV--ATGETYQRFVGHKSD-VXSVDIDKKASXIISGSRDKTIKVWTIKGQCLAT 143
Query: 388 TLKMNGTVRSLAFA------DDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTAL 441
L N V + DD ++S+G D V W+L + N L
Sbjct: 144 LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNS-NINTL 202
Query: 442 CTSPDGTFFAAGSDSGIVNVYN 463
SPDGT A+ G + ++N
Sbjct: 203 TASPDGTLIASAGKDGEIXLWN 224
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 91/212 (42%), Gaps = 20/212 (9%)
Query: 360 SPDSSVIAFVGNEGYILLVSSKTKELIGTLKMN-GTVRSLAFADDGKQLLSSGGDGQVYH 418
S D IA G + + + ++T E + +K + V AF+ D + + D +V
Sbjct: 631 SQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKI 690
Query: 419 WDLRTRTCIHRAVDEGC--INGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIK 476
WD T +H DE +N + A GS+ + +++ + ++
Sbjct: 691 WDSATGKLVH-TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ-----KECRN 744
Query: 477 TIENLTTKVDFMKFNNDAQILAICS---TMK------KNSLKLIHIPSYNVFSNWPPANR 527
T+ T V+ +F+ D ++LA CS T++ N K I++ + + S PP +
Sbjct: 745 TMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDV 804
Query: 528 NLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLN 559
+ +C +S G + V A KV L+ ++
Sbjct: 805 EV-IVKCCSWSADGDKIIVA-AKNKVLLFDIH 834
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 393 GTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDE-GCINGTALCTSPDGTFFA 451
GTV S A + D + S+ D W + +H GC+ +A S DG A
Sbjct: 1093 GTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAF--SLDGILLA 1150
Query: 452 AGSDSGIVNVYN 463
G D+G + ++N
Sbjct: 1151 TGDDNGEIRIWN 1162
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 37/201 (18%), Positives = 85/201 (42%), Gaps = 22/201 (10%)
Query: 249 YSRLIDANADES------STGPINSVQFHRNAQLLLVAGLDRRLRFFQI---DGKRNTKI 299
+ +L D N E T +N +F + +LL D LR + + + +++ +
Sbjct: 731 FLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINV 790
Query: 300 QSIFL--EDCP------VRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREE 351
+ FL ED P V+ S+ DG + I+A + K D+ + + +
Sbjct: 791 KRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLL-FDI--HTSGLLAEIHTGHH 847
Query: 352 KSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLKMN-GTVRSLAFADDGKQLLSS 410
++++ + SP + ++ + L + ++ + + + V + F+ DG L++
Sbjct: 848 STIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTA 907
Query: 411 GGDGQVYHWDLRTRTCIHRAV 431
D + W+ + + C + A+
Sbjct: 908 SDDQTIRVWETK-KVCKNSAI 927
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Query: 392 NGTVRSLAFADDGKQLLSSGGDGQVYHWDLR----TRTCIHRAVDEGCING----TALCT 443
NG VR AF+ DG L + +G++ W++ +C +V+EG T +C
Sbjct: 1134 NGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCF 1193
Query: 444 SPDG-TFFAAG 453
SPD T +AG
Sbjct: 1194 SPDSKTLVSAG 1204
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 67/311 (21%), Positives = 126/311 (40%), Gaps = 41/311 (13%)
Query: 265 INSVQFHRNAQLLLVAGLDRRLRFFQ-IDGKRNTKIQSIFLEDCP----VRKASFLPDGS 319
++SV+++ + L G D + + +DG + + L++ V ++ PDG+
Sbjct: 193 VHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT 252
Query: 320 QAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVS 379
+ A K ++ K +K P VG + + + ++++ N G+I V+
Sbjct: 253 KIASASADKTIKIWNVATLKVEKTIP-VGTRIEDQQLGIIWTKQALVSISAN-GFINFVN 310
Query: 380 SKTKELIGTLKM-----NGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEG 434
+ +G++ N + +L+ + DGK L S+ +G + WD+ T D
Sbjct: 311 PE----LGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVH 366
Query: 435 CINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIEN-LTTKVDFMKFNND 493
T + T+ G F D + V G K + N L+++ + + D
Sbjct: 367 ATMITGIKTTSKGDLFTVSWDDHLKVV----PAGGSGVDSSKAVANKLSSQPLGLAVSAD 422
Query: 494 AQILAICSTMKKNSL----KLIHIP-SYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGN 548
I A+ + K ++ KL +P SYN C+ S F+AVG
Sbjct: 423 GDI-AVAACYKHIAIYSHGKLTEVPISYN--------------SSCVALSNDKQFVAVGG 467
Query: 549 AAGKVFLYKLN 559
KV +YKL+
Sbjct: 468 QDSKVHVYKLS 478
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 49/253 (19%), Positives = 96/253 (37%), Gaps = 37/253 (14%)
Query: 262 TGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQA 321
T + + F + +LL D ++ + G I+++ D V S +P+G
Sbjct: 150 TDSVQDISFDHSGKLLASCSADMTIKLWDFQGFEC--IRTMHGHDHNVSSVSIMPNGDHI 207
Query: 322 IIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSK 381
+ A R K ++ + G E + + D ++IA N+ + +
Sbjct: 208 VSASRDKTIKMWEVQTGYC--VKTFTGHRE-WVRMVRPNQDGTLIASCSNDQTVRVWVVA 264
Query: 382 TKELIGTLKMN-GTVRSLAFADD--------------------GKQLLSSGGDGQVYHWD 420
TKE L+ + V +++A + G LLS D + WD
Sbjct: 265 TKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWD 324
Query: 421 LRTRTCIHRAV-DEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTI- 478
+ T C+ V + + G + G F + +D + V++ + ++ +KT+
Sbjct: 325 VSTGMCLMTLVGHDNWVRGVLFHSG--GKFILSCADDKTLRVWDYK-----NKRCMKTLN 377
Query: 479 --ENLTTKVDFMK 489
E+ T +DF K
Sbjct: 378 AHEHFVTSLDFHK 390
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 37/192 (19%), Positives = 73/192 (38%), Gaps = 12/192 (6%)
Query: 361 PDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQVYHW 419
P SV+ + I + +T + TLK +V+ ++F GK L S D + W
Sbjct: 118 PVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLW 177
Query: 420 DLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIE 479
D + CI R + N +++ P+G + S + ++ Q +KT
Sbjct: 178 DFQGFECI-RTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC-----VKTFT 231
Query: 480 NLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSP 539
V ++ N D ++A CS + + ++ + C+ ++P
Sbjct: 232 GHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKA-----ELREHRHVVECISWAP 286
Query: 540 GGGFMAVGNAAG 551
+ ++ A G
Sbjct: 287 ESSYSSISEATG 298
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 19/122 (15%)
Query: 359 VSPDSSVIAFVGNEGYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSGGDGQVYH 418
VSPD S+ A G +G +LL + + +L+ N + +L F+ + + L + + +
Sbjct: 569 VSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPN-RYWLCAATEHGIKI 627
Query: 419 WDLRTRTCIH------------------RAVDEGCINGTALCTSPDGTFFAAGSDSGIVN 460
WDL +++ + A I T+L S DG+ +G G++
Sbjct: 628 WDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIR 687
Query: 461 VY 462
V+
Sbjct: 688 VW 689
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 392 NGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFA 451
G V ++A + DG S G DG V WDL ++ I+ ALC SP+ +
Sbjct: 561 TGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIH--ALCFSPNRYWLC 618
Query: 452 AGSDSGI 458
A ++ GI
Sbjct: 619 AATEHGI 625
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 36/201 (17%), Positives = 87/201 (43%), Gaps = 22/201 (10%)
Query: 249 YSRLIDANADES------STGPINSVQFHRNAQLLLVAGLDRRLRFF---QIDGKRNTKI 299
+ +L D N E T +N +F + +LL D L+ + + +++ +
Sbjct: 730 FLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINV 789
Query: 300 QSIFLE--------DCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREE 351
+ FL + V+ S+ DG++ ++A + K F D+ + +G +
Sbjct: 790 KQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFL-FDI--HTSGLLGEIHTGHH 846
Query: 352 KSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLKMN-GTVRSLAFADDGKQLLSS 410
++++ + SP + + ++ + L ++ ++ + + + V + F+ DG L+S
Sbjct: 847 STIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTS 906
Query: 411 GGDGQVYHWDLRTRTCIHRAV 431
D + W+ + + C + AV
Sbjct: 907 SDDQTIRLWETK-KVCKNSAV 926
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 9/79 (11%)
Query: 392 NGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAV---DEGCING----TALCTS 444
NG VR AF+ D L + +G++ W++ +H +EG T LC S
Sbjct: 1133 NGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFS 1192
Query: 445 PDGTFFAAGSDSGIVNVYN 463
PDG + G + +N
Sbjct: 1193 PDGKMLISA--GGYIKWWN 1209
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 12/116 (10%)
Query: 360 SPDSSVIAFVGNEGYILLVSSKTKELI---------GTLKMNGTVRSLAFADDGKQLLSS 410
S DS+++A + G I + + EL+ G G V L F+ DGK L+S+
Sbjct: 1142 SVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISA 1201
Query: 411 GGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQE 466
G G + W++ T G N + SPD + + GI+ + E
Sbjct: 1202 G--GYIKWWNVVTGESSQTFYTNG-TNLKKIHVSPDFKTYVTVDNLGILYILQTLE 1254
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 35.4 bits (80), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Query: 392 NGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCT--SPDGTF 449
NG V + +A D ++++ G D Y W L+ RT V IN A C +P+
Sbjct: 52 NGQVTGIDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILR-INRAARCVRWAPNEKK 110
Query: 450 FAAGSDSGIVNV-YNRQE----FLGGKRKPIKT 477
FA GS S ++++ Y QE +KPI++
Sbjct: 111 FAVGSGSRVISICYFEQENDWWVCKHIKKPIRS 143
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 35.4 bits (80), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 80/195 (41%), Gaps = 8/195 (4%)
Query: 262 TGPINSVQFHRNAQLLLVAGLDRRLRFF-QIDGKRNTKIQSIFLEDCPVRKASFLPDGSQ 320
T ++SV+F N + L + D+ ++ + DGK I L + ++ D +
Sbjct: 45 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNL 101
Query: 321 AIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSS 380
+ A K D+ K K L G +P S++I + + +
Sbjct: 102 LVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVF-CCNFNPQSNLIVSGSFDESVRIWDV 158
Query: 381 KTKELIGTLKMNG-TVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGT 439
KT + + TL + V ++ F DG ++SS DG WD + C+ +D+ +
Sbjct: 159 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 218
Query: 440 ALCTSPDGTFFAAGS 454
+ SP+G + A +
Sbjct: 219 FVKFSPNGKYILAAT 233
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 89/210 (42%), Gaps = 19/210 (9%)
Query: 265 INSVQFHRNAQLLLVAGLDRRLRFFQID-GK--RNTKIQSIFLEDCPVRKASFLPDGSQA 321
I+ V + ++ LL+ A D+ L+ + + GK + K S ++ C +F P S
Sbjct: 90 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC-----NFNPQ-SNL 143
Query: 322 IIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSK 381
I++G F S+ + K K + + + D S+I +G + +
Sbjct: 144 IVSGS--FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 201
Query: 382 TKELIGTL--KMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAV----DEGC 435
+ + + TL N V + F+ +GK +L++ D + WD C+ ++ C
Sbjct: 202 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 261
Query: 436 INGTALCTSPDGTFFAAGSDSGIVNVYNRQ 465
I T G + +GS+ +V ++N Q
Sbjct: 262 IFANFSVTG--GKWIVSGSEDNLVYIWNLQ 289
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 35.4 bits (80), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 80/195 (41%), Gaps = 8/195 (4%)
Query: 262 TGPINSVQFHRNAQLLLVAGLDRRLRFF-QIDGKRNTKIQSIFLEDCPVRKASFLPDGSQ 320
T ++SV+F N + L + D+ ++ + DGK I L + ++ D +
Sbjct: 47 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNL 103
Query: 321 AIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSS 380
+ A K D+ K K L G +P S++I + + +
Sbjct: 104 LVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVF-CCNFNPQSNLIVSGSFDESVRIWDV 160
Query: 381 KTKELIGTLKMNG-TVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGT 439
KT + + TL + V ++ F DG ++SS DG WD + C+ +D+ +
Sbjct: 161 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 220
Query: 440 ALCTSPDGTFFAAGS 454
+ SP+G + A +
Sbjct: 221 FVKFSPNGKYILAAT 235
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 89/210 (42%), Gaps = 19/210 (9%)
Query: 265 INSVQFHRNAQLLLVAGLDRRLRFFQID-GK--RNTKIQSIFLEDCPVRKASFLPDGSQA 321
I+ V + ++ LL+ A D+ L+ + + GK + K S ++ C +F P S
Sbjct: 92 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC-----NFNPQ-SNL 145
Query: 322 IIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSK 381
I++G F S+ + K K + + + D S+I +G + +
Sbjct: 146 IVSGS--FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 203
Query: 382 TKELIGTL--KMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAV----DEGC 435
+ + + TL N V + F+ +GK +L++ D + WD C+ ++ C
Sbjct: 204 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 263
Query: 436 INGTALCTSPDGTFFAAGSDSGIVNVYNRQ 465
I T G + +GS+ +V ++N Q
Sbjct: 264 IFANFSVTG--GKWIVSGSEDNLVYIWNLQ 291
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Query: 392 NGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCT--SPDGTF 449
NG V + +A D ++++ G D Y W L+ RT V IN A C +P+
Sbjct: 52 NGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILR-INRAARCVRWAPNEKK 110
Query: 450 FAAGSDSGIVNV-YNRQE----FLGGKRKPIKT 477
FA GS S ++++ Y QE +KPI++
Sbjct: 111 FAVGSGSRVISICYFEQENDWWVCKHIKKPIRS 143
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 42/107 (39%), Gaps = 26/107 (24%)
Query: 380 SKTKELIGTLKMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIH----RAVDEGC 435
S + LIG TV +A D G+ +LS+ DG + W+ T T IH +
Sbjct: 169 SNPRTLIG---HRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDG 225
Query: 436 INGTALCTSPD-------------------GTFFAAGSDSGIVNVYN 463
+N AL D G + AG SG++ V+N
Sbjct: 226 VNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHN 272
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 80/195 (41%), Gaps = 8/195 (4%)
Query: 262 TGPINSVQFHRNAQLLLVAGLDRRLRFF-QIDGKRNTKIQSIFLEDCPVRKASFLPDGSQ 320
T ++SV+F N + L + D+ ++ + DGK I L + ++ D +
Sbjct: 29 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNL 85
Query: 321 AIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSS 380
+ A K D+ K K L G +P S++I + + +
Sbjct: 86 LVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVF-CCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 381 KTKELIGTLKMNG-TVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGT 439
KT + + TL + V ++ F DG ++SS DG WD + C+ +D+ +
Sbjct: 143 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 202
Query: 440 ALCTSPDGTFFAAGS 454
+ SP+G + A +
Sbjct: 203 FVKFSPNGKYILAAT 217
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 89/210 (42%), Gaps = 19/210 (9%)
Query: 265 INSVQFHRNAQLLLVAGLDRRLRFFQID-GK--RNTKIQSIFLEDCPVRKASFLPDGSQA 321
I+ V + ++ LL+ A D+ L+ + + GK + K S ++ C +F P S
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC-----NFNPQ-SNL 127
Query: 322 IIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSK 381
I++G F S+ + K K + + + D S+I +G + +
Sbjct: 128 IVSGS--FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 185
Query: 382 TKELIGTL--KMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAV----DEGC 435
+ + + TL N V + F+ +GK +L++ D + WD C+ ++ C
Sbjct: 186 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 245
Query: 436 INGTALCTSPDGTFFAAGSDSGIVNVYNRQ 465
I T G + +GS+ +V ++N Q
Sbjct: 246 IFANFSVTG--GKWIVSGSEDNLVYIWNLQ 273
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 42/107 (39%), Gaps = 26/107 (24%)
Query: 380 SKTKELIGTLKMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIH----RAVDEGC 435
S + LIG TV +A D G+ +LS+ DG + W+ T T IH +
Sbjct: 172 SNPRTLIG---HRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDG 228
Query: 436 INGTALCTSPD-------------------GTFFAAGSDSGIVNVYN 463
+N AL D G + AG SG++ V+N
Sbjct: 229 VNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHN 275
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 80/195 (41%), Gaps = 8/195 (4%)
Query: 262 TGPINSVQFHRNAQLLLVAGLDRRLRFF-QIDGKRNTKIQSIFLEDCPVRKASFLPDGSQ 320
T ++SV+F N + L + D+ ++ + DGK I L + ++ D +
Sbjct: 19 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNL 75
Query: 321 AIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSS 380
+ A K D+ K K L G +P S++I + + +
Sbjct: 76 LVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVF-CCNFNPQSNLIVSGSFDESVRIWDV 132
Query: 381 KTKELIGTLKMNG-TVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGT 439
KT + + TL + V ++ F DG ++SS DG WD + C+ +D+ +
Sbjct: 133 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 192
Query: 440 ALCTSPDGTFFAAGS 454
+ SP+G + A +
Sbjct: 193 FVKFSPNGKYILAAT 207
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 89/210 (42%), Gaps = 19/210 (9%)
Query: 265 INSVQFHRNAQLLLVAGLDRRLRFFQID-GK--RNTKIQSIFLEDCPVRKASFLPDGSQA 321
I+ V + ++ LL+ A D+ L+ + + GK + K S ++ C +F P S
Sbjct: 64 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC-----NFNPQ-SNL 117
Query: 322 IIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSK 381
I++G F S+ + K K + + + D S+I +G + +
Sbjct: 118 IVSGS--FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 175
Query: 382 TKELIGTL--KMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAV----DEGC 435
+ + + TL N V + F+ +GK +L++ D + WD C+ ++ C
Sbjct: 176 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 235
Query: 436 INGTALCTSPDGTFFAAGSDSGIVNVYNRQ 465
I T G + +GS+ +V ++N Q
Sbjct: 236 IFANFSVTG--GKWIVSGSEDNLVYIWNLQ 263
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 80/195 (41%), Gaps = 8/195 (4%)
Query: 262 TGPINSVQFHRNAQLLLVAGLDRRLRFF-QIDGKRNTKIQSIFLEDCPVRKASFLPDGSQ 320
T ++SV+F N + L + D+ ++ + DGK I L + ++ D +
Sbjct: 29 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNL 85
Query: 321 AIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSS 380
+ A K D+ K K L G +P S++I + + +
Sbjct: 86 LVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVF-CCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 381 KTKELIGTLKMNG-TVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGT 439
KT + + TL + V ++ F DG ++SS DG WD + C+ +D+ +
Sbjct: 143 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 202
Query: 440 ALCTSPDGTFFAAGS 454
+ SP+G + A +
Sbjct: 203 FVKFSPNGKYILAAT 217
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 89/210 (42%), Gaps = 19/210 (9%)
Query: 265 INSVQFHRNAQLLLVAGLDRRLRFFQID-GK--RNTKIQSIFLEDCPVRKASFLPDGSQA 321
I+ V + ++ LL+ A D+ L+ + + GK + K S ++ C +F P S
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC-----NFNPQ-SNL 127
Query: 322 IIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSK 381
I++G F S+ + K K + + + D S+I +G + +
Sbjct: 128 IVSGS--FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 185
Query: 382 TKELIGTL--KMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAV----DEGC 435
+ + + TL N V + F+ +GK +L++ D + WD C+ ++ C
Sbjct: 186 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 245
Query: 436 INGTALCTSPDGTFFAAGSDSGIVNVYNRQ 465
I T G + +GS+ +V ++N Q
Sbjct: 246 IFANFSVTG--GKWIVSGSEDNLVYIWNLQ 273
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 80/195 (41%), Gaps = 8/195 (4%)
Query: 262 TGPINSVQFHRNAQLLLVAGLDRRLRFF-QIDGKRNTKIQSIFLEDCPVRKASFLPDGSQ 320
T ++SV+F N + L + D+ ++ + DGK I L + ++ D +
Sbjct: 23 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNL 79
Query: 321 AIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSS 380
+ A K D+ K K L G +P S++I + + +
Sbjct: 80 LVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVF-CCNFNPQSNLIVSGSFDESVRIWDV 136
Query: 381 KTKELIGTLKMNG-TVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGT 439
KT + + TL + V ++ F DG ++SS DG WD + C+ +D+ +
Sbjct: 137 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 196
Query: 440 ALCTSPDGTFFAAGS 454
+ SP+G + A +
Sbjct: 197 FVKFSPNGKYILAAT 211
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 89/210 (42%), Gaps = 19/210 (9%)
Query: 265 INSVQFHRNAQLLLVAGLDRRLRFFQID-GK--RNTKIQSIFLEDCPVRKASFLPDGSQA 321
I+ V + ++ LL+ A D+ L+ + + GK + K S ++ C +F P S
Sbjct: 68 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC-----NFNPQ-SNL 121
Query: 322 IIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSK 381
I++G F S+ + K K + + + D S+I +G + +
Sbjct: 122 IVSGS--FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 179
Query: 382 TKELIGTL--KMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAV----DEGC 435
+ + + TL N V + F+ +GK +L++ D + WD C+ ++ C
Sbjct: 180 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 239
Query: 436 INGTALCTSPDGTFFAAGSDSGIVNVYNRQ 465
I T G + +GS+ +V ++N Q
Sbjct: 240 IFANFSVTG--GKWIVSGSEDNLVYIWNLQ 267
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 80/195 (41%), Gaps = 8/195 (4%)
Query: 262 TGPINSVQFHRNAQLLLVAGLDRRLRFF-QIDGKRNTKIQSIFLEDCPVRKASFLPDGSQ 320
T ++SV+F N + L + D+ ++ + DGK I L + ++ D +
Sbjct: 24 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNL 80
Query: 321 AIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSS 380
+ A K D+ K K L G +P S++I + + +
Sbjct: 81 LVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVF-CCNFNPQSNLIVSGSFDESVRIWDV 137
Query: 381 KTKELIGTLKMNG-TVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGT 439
KT + + TL + V ++ F DG ++SS DG WD + C+ +D+ +
Sbjct: 138 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 197
Query: 440 ALCTSPDGTFFAAGS 454
+ SP+G + A +
Sbjct: 198 FVKFSPNGKYILAAT 212
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 89/210 (42%), Gaps = 19/210 (9%)
Query: 265 INSVQFHRNAQLLLVAGLDRRLRFFQID-GK--RNTKIQSIFLEDCPVRKASFLPDGSQA 321
I+ V + ++ LL+ A D+ L+ + + GK + K S ++ C +F P S
Sbjct: 69 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC-----NFNPQ-SNL 122
Query: 322 IIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSK 381
I++G F S+ + K K + + + D S+I +G + +
Sbjct: 123 IVSGS--FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 180
Query: 382 TKELIGTL--KMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAV----DEGC 435
+ + + TL N V + F+ +GK +L++ D + WD C+ ++ C
Sbjct: 181 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 240
Query: 436 INGTALCTSPDGTFFAAGSDSGIVNVYNRQ 465
I T G + +GS+ +V ++N Q
Sbjct: 241 IFANFSVTG--GKWIVSGSEDNLVYIWNLQ 268
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 80/195 (41%), Gaps = 8/195 (4%)
Query: 262 TGPINSVQFHRNAQLLLVAGLDRRLRFF-QIDGKRNTKIQSIFLEDCPVRKASFLPDGSQ 320
T ++SV+F N + L + D+ ++ + DGK I L + ++ D +
Sbjct: 40 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNL 96
Query: 321 AIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSS 380
+ A K D+ K K L G +P S++I + + +
Sbjct: 97 LVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVF-CCNFNPQSNLIVSGSFDESVRIWDV 153
Query: 381 KTKELIGTLKMNG-TVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGT 439
KT + + TL + V ++ F DG ++SS DG WD + C+ +D+ +
Sbjct: 154 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 213
Query: 440 ALCTSPDGTFFAAGS 454
+ SP+G + A +
Sbjct: 214 FVKFSPNGKYILAAT 228
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 89/210 (42%), Gaps = 19/210 (9%)
Query: 265 INSVQFHRNAQLLLVAGLDRRLRFFQID-GK--RNTKIQSIFLEDCPVRKASFLPDGSQA 321
I+ V + ++ LL+ A D+ L+ + + GK + K S ++ C +F P S
Sbjct: 85 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC-----NFNPQ-SNL 138
Query: 322 IIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSK 381
I++G F S+ + K K + + + D S+I +G + +
Sbjct: 139 IVSGS--FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 196
Query: 382 TKELIGTL--KMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAV----DEGC 435
+ + + TL N V + F+ +GK +L++ D + WD C+ ++ C
Sbjct: 197 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 256
Query: 436 INGTALCTSPDGTFFAAGSDSGIVNVYNRQ 465
I T G + +GS+ +V ++N Q
Sbjct: 257 IFANFSVTG--GKWIVSGSEDNLVYIWNLQ 284
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 80/195 (41%), Gaps = 8/195 (4%)
Query: 262 TGPINSVQFHRNAQLLLVAGLDRRLRFF-QIDGKRNTKIQSIFLEDCPVRKASFLPDGSQ 320
T ++SV+F N + L + D+ ++ + DGK I L + ++ D +
Sbjct: 23 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNL 79
Query: 321 AIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSS 380
+ A K D+ K K L G +P S++I + + +
Sbjct: 80 LVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVF-CCNFNPQSNLIVSGSFDESVRIWDV 136
Query: 381 KTKELIGTLKMNG-TVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGT 439
KT + + TL + V ++ F DG ++SS DG WD + C+ +D+ +
Sbjct: 137 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 196
Query: 440 ALCTSPDGTFFAAGS 454
+ SP+G + A +
Sbjct: 197 FVKFSPNGKYILAAT 211
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 89/210 (42%), Gaps = 19/210 (9%)
Query: 265 INSVQFHRNAQLLLVAGLDRRLRFFQID-GK--RNTKIQSIFLEDCPVRKASFLPDGSQA 321
I+ V + ++ LL+ A D+ L+ + + GK + K S ++ C +F P S
Sbjct: 68 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC-----NFNPQ-SNL 121
Query: 322 IIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSK 381
I++G F S+ + K K + + + D S+I +G + +
Sbjct: 122 IVSGS--FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 179
Query: 382 TKELIGTL--KMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAV----DEGC 435
+ + + TL N V + F+ +GK +L++ D + WD C+ ++ C
Sbjct: 180 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 239
Query: 436 INGTALCTSPDGTFFAAGSDSGIVNVYNRQ 465
I T G + +GS+ +V ++N Q
Sbjct: 240 IFANFSVTG--GKWIVSGSEDNLVYIWNLQ 267
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 52/137 (37%), Gaps = 27/137 (19%)
Query: 366 IAFVGNEGYILLVSSKTKELIGTLK-------------MNGTVRSLAFADDGKQLLSSGG 412
+A+V +G ++ S EL L+ + V++L+ DG Q +S G
Sbjct: 100 VAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGK 159
Query: 413 DGQVYHWDLRTRTCIHRA-VDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGK 471
D V WDL + + +N A C D F + G D I+ L
Sbjct: 160 DFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRIL--------LWDT 211
Query: 472 RKPIKTIENLTTKVDFM 488
RKP T++DF
Sbjct: 212 RKP-----KPATRIDFC 223
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 80/195 (41%), Gaps = 8/195 (4%)
Query: 262 TGPINSVQFHRNAQLLLVAGLDRRLRFF-QIDGKRNTKIQSIFLEDCPVRKASFLPDGSQ 320
T ++SV+F N + L + D+ ++ + DGK I L + ++ D +
Sbjct: 29 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNL 85
Query: 321 AIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSS 380
+ A K D+ K K L G +P S++I + + +
Sbjct: 86 LVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVF-CCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 381 KTKELIGTLKMNG-TVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGT 439
KT + + TL + V ++ F DG ++SS DG WD + C+ +D+ +
Sbjct: 143 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 202
Query: 440 ALCTSPDGTFFAAGS 454
+ SP+G + A +
Sbjct: 203 FVKFSPNGKYILAAT 217
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 89/210 (42%), Gaps = 19/210 (9%)
Query: 265 INSVQFHRNAQLLLVAGLDRRLRFFQID-GK--RNTKIQSIFLEDCPVRKASFLPDGSQA 321
I+ V + ++ LL+ A D+ L+ + + GK + K S ++ C +F P S
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC-----NFNPQ-SNL 127
Query: 322 IIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSK 381
I++G F S+ + K K + + + D S+I +G + +
Sbjct: 128 IVSGS--FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 185
Query: 382 TKELIGTL--KMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAV----DEGC 435
+ + + TL N V + F+ +GK +L++ D + WD C+ ++ C
Sbjct: 186 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 245
Query: 436 INGTALCTSPDGTFFAAGSDSGIVNVYNRQ 465
I T G + +GS+ +V ++N Q
Sbjct: 246 IFANFSVTG--GKWIVSGSEDNLVYIWNLQ 273
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 80/195 (41%), Gaps = 8/195 (4%)
Query: 262 TGPINSVQFHRNAQLLLVAGLDRRLRFF-QIDGKRNTKIQSIFLEDCPVRKASFLPDGSQ 320
T ++SV+F N + L + D+ ++ + DGK I L + ++ D +
Sbjct: 28 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNL 84
Query: 321 AIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSS 380
+ A K D+ K K L G +P S++I + + +
Sbjct: 85 LVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVF-CCNFNPQSNLIVSGSFDESVRIWDV 141
Query: 381 KTKELIGTLKMNG-TVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGT 439
KT + + TL + V ++ F DG ++SS DG WD + C+ +D+ +
Sbjct: 142 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 201
Query: 440 ALCTSPDGTFFAAGS 454
+ SP+G + A +
Sbjct: 202 FVKFSPNGKYILAAT 216
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 89/210 (42%), Gaps = 19/210 (9%)
Query: 265 INSVQFHRNAQLLLVAGLDRRLRFFQID-GK--RNTKIQSIFLEDCPVRKASFLPDGSQA 321
I+ V + ++ LL+ A D+ L+ + + GK + K S ++ C +F P S
Sbjct: 73 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC-----NFNPQ-SNL 126
Query: 322 IIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSK 381
I++G F S+ + K K + + + D S+I +G + +
Sbjct: 127 IVSGS--FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 184
Query: 382 TKELIGTL--KMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAV----DEGC 435
+ + + TL N V + F+ +GK +L++ D + WD C+ ++ C
Sbjct: 185 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 244
Query: 436 INGTALCTSPDGTFFAAGSDSGIVNVYNRQ 465
I T G + +GS+ +V ++N Q
Sbjct: 245 IFANFSVTG--GKWIVSGSEDNLVYIWNLQ 272
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 80/195 (41%), Gaps = 8/195 (4%)
Query: 262 TGPINSVQFHRNAQLLLVAGLDRRLRFF-QIDGKRNTKIQSIFLEDCPVRKASFLPDGSQ 320
T ++SV+F N + L + D+ ++ + DGK I L + ++ D +
Sbjct: 26 TKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNL 82
Query: 321 AIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSS 380
+ A K D+ K K L G +P S++I + + +
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVF-CCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 381 KTKELIGTLKMNG-TVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGT 439
KT + + TL + V ++ F DG ++SS DG WD + C+ +D+ +
Sbjct: 140 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 199
Query: 440 ALCTSPDGTFFAAGS 454
+ SP+G + A +
Sbjct: 200 FVKFSPNGKYILAAT 214
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 89/210 (42%), Gaps = 19/210 (9%)
Query: 265 INSVQFHRNAQLLLVAGLDRRLRFFQID-GK--RNTKIQSIFLEDCPVRKASFLPDGSQA 321
I+ V + ++ LL+ A D+ L+ + + GK + K S ++ C +F P S
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC-----NFNPQ-SNL 124
Query: 322 IIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSK 381
I++G F S+ + K K + + + D S+I +G + +
Sbjct: 125 IVSGS--FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 182
Query: 382 TKELIGTL--KMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAV----DEGC 435
+ + + TL N V + F+ +GK +L++ D + WD C+ ++ C
Sbjct: 183 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 242
Query: 436 INGTALCTSPDGTFFAAGSDSGIVNVYNRQ 465
I T G + +GS+ +V ++N Q
Sbjct: 243 IFANFSVTG--GKWIVSGSEDNLVYIWNLQ 270
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 80/195 (41%), Gaps = 8/195 (4%)
Query: 262 TGPINSVQFHRNAQLLLVAGLDRRLRFF-QIDGKRNTKIQSIFLEDCPVRKASFLPDGSQ 320
T ++SV+F N + L + D+ ++ + DGK I L + ++ D +
Sbjct: 22 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNL 78
Query: 321 AIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSS 380
+ A K D+ K K L G +P S++I + + +
Sbjct: 79 LVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVF-CCNFNPQSNLIVSGSFDESVRIWDV 135
Query: 381 KTKELIGTLKMNG-TVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGT 439
KT + + TL + V ++ F DG ++SS DG WD + C+ +D+ +
Sbjct: 136 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 195
Query: 440 ALCTSPDGTFFAAGS 454
+ SP+G + A +
Sbjct: 196 FVKFSPNGKYILAAT 210
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 89/210 (42%), Gaps = 19/210 (9%)
Query: 265 INSVQFHRNAQLLLVAGLDRRLRFFQID-GK--RNTKIQSIFLEDCPVRKASFLPDGSQA 321
I+ V + ++ LL+ A D+ L+ + + GK + K S ++ C +F P S
Sbjct: 67 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC-----NFNPQ-SNL 120
Query: 322 IIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSK 381
I++G F S+ + K K + + + D S+I +G + +
Sbjct: 121 IVSGS--FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 178
Query: 382 TKELIGTL--KMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAV----DEGC 435
+ + + TL N V + F+ +GK +L++ D + WD C+ ++ C
Sbjct: 179 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 238
Query: 436 INGTALCTSPDGTFFAAGSDSGIVNVYNRQ 465
I T G + +GS+ +V ++N Q
Sbjct: 239 IFANFSVTG--GKWIVSGSEDNLVYIWNLQ 266
>pdb|2VDU|B Chain B, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
pdb|2VDU|D Chain D, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
Length = 450
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 84/214 (39%), Gaps = 47/214 (21%)
Query: 233 DLVVKSSAKL-SPGL-----LEYSRLIDANADESSTGPINSVQFHRNAQLLLVAGLDRRL 286
D + +++AK+ SPGL Y R + +DES +L+ A D+ L
Sbjct: 82 DSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDES--------------RLIACADSDKSL 127
Query: 287 RFFQID--GKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIG 344
F +D K K++ F S D + IIA + YS+D+ +K
Sbjct: 128 LVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFT 187
Query: 345 --PLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGT-------------L 389
P++G VS + V ++G+ +++S E I
Sbjct: 188 QEPILGH---------VSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLF 238
Query: 390 KMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRT 423
V S+ D LLS+GGD +++ WD +T
Sbjct: 239 GHKHFVSSICCGKD-YLLLSAGGDDKIFAWDWKT 271
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 79/195 (40%), Gaps = 8/195 (4%)
Query: 262 TGPINSVQFHRNAQLLLVAGLDRRLRFF-QIDGKRNTKIQSIFLEDCPVRKASFLPDGSQ 320
T ++SV+F N + L + D+ ++ + DGK I L + ++ D +
Sbjct: 26 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNL 82
Query: 321 AIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSS 380
+ A K D+ K K L G +P S++I + + +
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVF-CCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 381 KTKELIGTLKMNG-TVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGT 439
KT + TL + V ++ F DG ++SS DG WD + C+ +D+ +
Sbjct: 140 KTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 199
Query: 440 ALCTSPDGTFFAAGS 454
+ SP+G + A +
Sbjct: 200 FVKFSPNGKYILAAT 214
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 32/166 (19%), Positives = 64/166 (38%), Gaps = 8/166 (4%)
Query: 268 VQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRR 327
F+ + L++ D +R + D K ++++ PV F DGS + +
Sbjct: 116 CNFNPQSNLIVSGSFDESVRIW--DVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 173
Query: 328 KFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIG 387
D + K L+ + + F + SP+ I + + L + +
Sbjct: 174 GLCRIWDTASGQCLKT--LIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLK 231
Query: 388 TLKMNGTVRSLAFAD----DGKQLLSSGGDGQVYHWDLRTRTCIHR 429
T + + FA+ GK ++S D VY W+L+T+ + +
Sbjct: 232 TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQK 277
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 32/166 (19%), Positives = 64/166 (38%), Gaps = 8/166 (4%)
Query: 268 VQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRR 327
F+ + L++ D +R + D K ++++ PV F DGS + +
Sbjct: 116 CNFNPQSNLIVSGSFDESVRIW--DVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 173
Query: 328 KFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIG 387
D + K L+ + + F + SP+ I + + L + +
Sbjct: 174 GLCRIWDTASGQCLKT--LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK 231
Query: 388 TLKMNGTVRSLAFAD----DGKQLLSSGGDGQVYHWDLRTRTCIHR 429
T + + FA+ GK ++S D VY W+L+T+ + +
Sbjct: 232 TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQK 277
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 79/195 (40%), Gaps = 8/195 (4%)
Query: 262 TGPINSVQFHRNAQLLLVAGLDRRLRFF-QIDGKRNTKIQSIFLEDCPVRKASFLPDGSQ 320
T ++SV+F N + L + D+ ++ + DGK I L + ++ D +
Sbjct: 26 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNL 82
Query: 321 AIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSS 380
+ A K D+ K K L G +P S++I + + +
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVF-CCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 381 KTKELIGTLKMNG-TVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGT 439
KT + TL + V ++ F DG ++SS DG WD + C+ +D+ +
Sbjct: 140 KTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 199
Query: 440 ALCTSPDGTFFAAGS 454
+ SP+G + A +
Sbjct: 200 FVKFSPNGKYILAAT 214
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 79/210 (37%), Gaps = 35/210 (16%)
Query: 265 INSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIA 324
++ V + Q L D LR + + T+ +D V +F D Q I++
Sbjct: 66 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKD--VLSVAFSSDNRQ-IVS 122
Query: 325 GRR----KFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSS 380
G R K + +L + K ++E E+ S + F N ++VS
Sbjct: 123 GSRDKTIKLWNTLGVCKYTV--------QDESHSEWV------SCVRFSPNSSNPIIVSC 168
Query: 381 KTKELIGT-------LKMN-----GTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIH 428
+L+ LK N G + ++ + DG S G DGQ WDL ++
Sbjct: 169 GWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLY 228
Query: 429 RAVDEGCINGTALCTSPDGTFFAAGSDSGI 458
IN ALC SP+ + A + I
Sbjct: 229 TLDGGDIIN--ALCFSPNRYWLCAATGPSI 256
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 71/169 (42%), Gaps = 8/169 (4%)
Query: 395 VRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGS 454
V + + DG+ LS DG + WDL T T R V + ++ S D +GS
Sbjct: 66 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGH-TKDVLSVAFSSDNRQIVSGS 124
Query: 455 DSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIP 514
+ ++N LG + ++ E+ + V ++F+ ++ I S +K+ ++
Sbjct: 125 RDKTIKLWNT---LGVCKYTVQD-ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA 180
Query: 515 SYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNHYHH 563
+ + +N + Y + SP G A G G+ L+ LN H
Sbjct: 181 NCKLKTN---HIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKH 226
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 80/195 (41%), Gaps = 8/195 (4%)
Query: 262 TGPINSVQFHRNAQLLLVAGLDRRLRFF-QIDGKRNTKIQSIFLEDCPVRKASFLPDGSQ 320
T ++SV+F N + L + D+ ++ + DGK I L + ++ D +
Sbjct: 26 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNL 82
Query: 321 AIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSS 380
+ A K D+ K K L G +P S++I + + +
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVF-CCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 381 KTKELIGTLKMNG-TVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGT 439
KT + + TL + V ++ F DG ++SS DG WD + C+ +D+ +
Sbjct: 140 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 199
Query: 440 ALCTSPDGTFFAAGS 454
+ SP+G + A +
Sbjct: 200 FVKFSPNGKYILAAT 214
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 89/210 (42%), Gaps = 19/210 (9%)
Query: 265 INSVQFHRNAQLLLVAGLDRRLRFFQID-GK--RNTKIQSIFLEDCPVRKASFLPDGSQA 321
I+ V + ++ LL+ A D+ L+ + + GK + K S ++ C +F P S
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC-----NFNPQ-SNL 124
Query: 322 IIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSK 381
I++G F S+ + K K + + + D S+I +G + +
Sbjct: 125 IVSGS--FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 182
Query: 382 TKELIGTL--KMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAV----DEGC 435
+ + + TL N V + F+ +GK +L++ D + WD C+ ++ C
Sbjct: 183 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 242
Query: 436 INGTALCTSPDGTFFAAGSDSGIVNVYNRQ 465
I T G + +GS+ +V ++N Q
Sbjct: 243 IFANFSVTG--GKWIVSGSEDNLVYIWNLQ 270
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 79/210 (37%), Gaps = 35/210 (16%)
Query: 265 INSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIA 324
++ V + Q L D LR + + T+ +D V +F D Q I++
Sbjct: 89 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKD--VLSVAFSSDNRQ-IVS 145
Query: 325 GRR----KFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSS 380
G R K + +L + K ++E E+ S + F N ++VS
Sbjct: 146 GSRDKTIKLWNTLGVCKYTV--------QDESHSEWV------SCVRFSPNSSNPIIVSC 191
Query: 381 KTKELIGT-------LKMN-----GTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIH 428
+L+ LK N G + ++ + DG S G DGQ WDL ++
Sbjct: 192 GWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLY 251
Query: 429 RAVDEGCINGTALCTSPDGTFFAAGSDSGI 458
IN ALC SP+ + A + I
Sbjct: 252 TLDGGDIIN--ALCFSPNRYWLCAATGPSI 279
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 71/169 (42%), Gaps = 8/169 (4%)
Query: 395 VRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGS 454
V + + DG+ LS DG + WDL T T R V + ++ S D +GS
Sbjct: 89 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGH-TKDVLSVAFSSDNRQIVSGS 147
Query: 455 DSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIP 514
+ ++N LG + ++ E+ + V ++F+ ++ I S +K+ ++
Sbjct: 148 RDKTIKLWNT---LGVCKYTVQD-ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA 203
Query: 515 SYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNHYHH 563
+ + +N + Y + SP G A G G+ L+ LN H
Sbjct: 204 NCKLKTN---HIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKH 249
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 80/195 (41%), Gaps = 8/195 (4%)
Query: 262 TGPINSVQFHRNAQLLLVAGLDRRLRFF-QIDGKRNTKIQSIFLEDCPVRKASFLPDGSQ 320
T ++SV+F N + L + D+ ++ + DGK I L + ++ D +
Sbjct: 26 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNL 82
Query: 321 AIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSS 380
+ A K D+ K K L G +P S++I + + +
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLK--TLKGHSNYVF-CCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 381 KTKELIGTLKMNG-TVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGT 439
KT + + TL + V ++ F DG ++SS DG WD + C+ +D+ +
Sbjct: 140 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 199
Query: 440 ALCTSPDGTFFAAGS 454
+ SP+G + A +
Sbjct: 200 FVKFSPNGKYILAAT 214
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 89/210 (42%), Gaps = 19/210 (9%)
Query: 265 INSVQFHRNAQLLLVAGLDRRLRFFQID-GK--RNTKIQSIFLEDCPVRKASFLPDGSQA 321
I+ V + ++ LL+ A D+ L+ + + GK + K S ++ C +F P S
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC-----NFNPQ-SNL 124
Query: 322 IIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSK 381
I++G F S+ + K K + + + D S+I +G + +
Sbjct: 125 IVSGS--FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 182
Query: 382 TKELIGTL--KMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAV----DEGC 435
+ + + TL N V + F+ +GK +L++ D + WD C+ ++ C
Sbjct: 183 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 242
Query: 436 INGTALCTSPDGTFFAAGSDSGIVNVYNRQ 465
I T G + +GS+ +V ++N Q
Sbjct: 243 IFANFSVTG--GKWIVSGSEDNLVYIWNLQ 270
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 106/256 (41%), Gaps = 39/256 (15%)
Query: 252 LIDANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCP-VR 310
L+ + +G + S+ + ++ A D RL + + + K +I L CP V
Sbjct: 56 LVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVW--NALTSQKTHAIKLH-CPWVM 112
Query: 311 KASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPL-VGREEKSLEFFEVS----PD--S 363
+ +F P+G Q++ G S+ + ++AD+ G + V R + + S PD +
Sbjct: 113 ECAFAPNG-QSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET 171
Query: 364 SVIAFVGNEGYIL--LVSSKTKELIGTLKMNGT---VRSLAFAD-DGKQLLSSGGDGQVY 417
+I G++ +L + + + + G+ +G V SL+ + +S D V
Sbjct: 172 RLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVR 231
Query: 418 HWDLRTRTCIHRAV-----DEGCINGTALCTSPDGTFFAAGSDSGI-----------VNV 461
WDLR + RAV EG IN PDG F GSD G + V
Sbjct: 232 LWDLRITS---RAVRTYHGHEGDINSVKF--FPDGQRFGTGSDDGTCRLFDMRTGHQLQV 286
Query: 462 YNRQEFLGGKRKPIKT 477
YNR+ PI T
Sbjct: 287 YNREPDRNDNELPIVT 302
>pdb|3R6A|A Chain A, Crystal Structure Of An Uncharacterized Protein
(Hypothetical Protein Mm_3218) From Methanosarcina
Mazei.
pdb|3R6A|B Chain B, Crystal Structure Of An Uncharacterized Protein
(Hypothetical Protein Mm_3218) From Methanosarcina Mazei
Length = 144
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 10/105 (9%)
Query: 224 VDDILRTDEDLVVKSSAKLSPGLLEYSRLIDANADESSTGPINSVQFHRNAQLLLVAGLD 283
V IL+ L V A L+P L Y L++ P V+ + + +LL+AG +
Sbjct: 2 VXKILQILSRLYV---ADLNPALEFYEELLETPVAXRFEIPQTGVELAQISTILLIAGSE 58
Query: 284 RRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRK 328
L+ F RNT Q+ FL D + +FL + II G K
Sbjct: 59 EALKPF-----RNT--QATFLVDSLDKFKTFLEENGAEIIRGPSK 96
>pdb|3G5L|A Chain A, Crystal Structure Of Putative S-Adenosylmethionine
Dependent Methyltransferase From Listeria Monocytogenes
pdb|3G5L|B Chain B, Crystal Structure Of Putative S-Adenosylmethionine
Dependent Methyltransferase From Listeria Monocytogenes
Length = 253
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 5/90 (5%)
Query: 335 LVKAKADKIGPLVGREEKSLEFFEVSPDS-SVIAFVGNEGYILLVSSKTKELIGTLKMNG 393
L +AK P+V E+K++E + PD+ +V+ YI K++ LK +G
Sbjct: 80 LTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIASFDDICKKVYINLKSSG 139
Query: 394 ----TVRSLAFADDGKQLLSSGGDGQVYHW 419
+V F DG+Q + G HW
Sbjct: 140 SFIFSVEHPVFTADGRQDWYTDETGNKLHW 169
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 90/225 (40%), Gaps = 44/225 (19%)
Query: 263 GPINSVQFHRNAQLLLVAG-----------LDRRLRFFQIDGKRNTKIQSIFLEDC-PVR 310
GPI+ + + + L V G D ++ G + +I + L+ P+R
Sbjct: 117 GPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSG-HSQRINACHLKQSRPMR 175
Query: 311 KASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSS-VIAFV 369
+ DGS G F + D K G + +EF SPDS + V
Sbjct: 176 SMTVGDDGSVVFYQGPPFKFSASDRTHHKQ-------GSFVRDVEF---SPDSGEFVITV 225
Query: 370 GNEGYILLVSSKTKELIGTLK-----MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTR 424
G++ I K+ E + ++ + G + +L++ D ++ + G D + WD+ T
Sbjct: 226 GSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDS-QKFATVGADATIRVWDVTTS 284
Query: 425 TCIHR-AVDE--------GCI---NGTALCTSPDGT--FFAAGSD 455
C+ + +D+ G + NG + S DGT F+ G D
Sbjct: 285 KCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHD 329
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 386 IGTLKMNGT-VRSLAFADDGKQLLSSGGDGQVYHWDLRT 423
IGTL+ + + V LA+ DG QL S G D V WD R+
Sbjct: 210 IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARS 248
>pdb|1U0E|A Chain A, Crystal Structure Of Mouse Phosphoglucose Isomerase
pdb|1U0E|B Chain B, Crystal Structure Of Mouse Phosphoglucose Isomerase
pdb|1U0F|A Chain A, Crystal Structure Of Mouse Phosphoglucose Isomerase In
Complex With Glucose 6-Phosphate
pdb|1U0F|B Chain B, Crystal Structure Of Mouse Phosphoglucose Isomerase In
Complex With Glucose 6-Phosphate
pdb|1U0G|A Chain A, Crystal Structure Of Mouse Phosphoglucose Isomerase In
Complex With Erythrose 4-Phosphate
pdb|1U0G|B Chain B, Crystal Structure Of Mouse Phosphoglucose Isomerase In
Complex With Erythrose 4-Phosphate
Length = 564
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 80 VEFGKEDEEKVQPEAETGSAVYFVDPSANSMLS 112
VE GK+ +K++PE E SAV D S N ++S
Sbjct: 515 VELGKQLAKKIEPELEGSSAVTSHDSSTNGLIS 547
>pdb|2CVP|A Chain A, Crystal Structure Of Mouse Amf
pdb|2CVP|B Chain B, Crystal Structure Of Mouse Amf
pdb|2CXN|A Chain A, Crystal Structure Of Mouse Amf PHOSPHATE COMPLEX
pdb|2CXN|B Chain B, Crystal Structure Of Mouse Amf PHOSPHATE COMPLEX
pdb|2CXO|A Chain A, Crystal Structure Of Mouse Amf E4P COMPLEX
pdb|2CXO|B Chain B, Crystal Structure Of Mouse Amf E4P COMPLEX
pdb|2CXP|A Chain A, Crystal Structure Of Mouse Amf / A5p Complex
pdb|2CXP|B Chain B, Crystal Structure Of Mouse Amf / A5p Complex
pdb|2CXQ|A Chain A, Crystal Structure Of Mouse Amf S6P COMPLEX
pdb|2CXQ|B Chain B, Crystal Structure Of Mouse Amf S6P COMPLEX
pdb|2CXR|A Chain A, Crystal Structure Of Mouse Amf 6PG COMPLEX
pdb|2CXR|B Chain B, Crystal Structure Of Mouse Amf 6PG COMPLEX
pdb|2CXS|A Chain A, Crystal Structure Of Mouse Amf / F6p Complex
pdb|2CXS|B Chain B, Crystal Structure Of Mouse Amf / F6p Complex
pdb|2CXT|A Chain A, Crystal Structure Of Mouse Amf F6P COMPLEX
pdb|2CXT|B Chain B, Crystal Structure Of Mouse Amf F6P COMPLEX
pdb|2CXU|A Chain A, Crystal Structure Of Mouse Amf / M6p Complex
pdb|2CXU|B Chain B, Crystal Structure Of Mouse Amf / M6p Complex
Length = 557
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 80 VEFGKEDEEKVQPEAETGSAVYFVDPSANSMLS 112
VE GK+ +K++PE E SAV D S N ++S
Sbjct: 515 VELGKQLAKKIEPELEGSSAVTSHDSSTNGLIS 547
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 21/118 (17%)
Query: 358 EVSPDSS-VIAFVGNEGYILLVSSKTKELIGTLK-----MNGTVRSLAFADDGKQLLSSG 411
E SPDS + VG++ I K+ E + ++ + G + +L++ D ++ + G
Sbjct: 213 EFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDS-QKFATVG 271
Query: 412 GDGQVYHWDLRTRTCIHR-AVDE--------GCI---NGTALCTSPDGT--FFAAGSD 455
D + WD+ T C+ + +D+ G + NG + S DGT F+ G D
Sbjct: 272 ADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHD 329
>pdb|1L0Q|A Chain A, Tandem Yvtn Beta-Propeller And Pkd Domains From An
Archaeal Surface Layer Protein
pdb|1L0Q|B Chain B, Tandem Yvtn Beta-Propeller And Pkd Domains From An
Archaeal Surface Layer Protein
pdb|1L0Q|C Chain C, Tandem Yvtn Beta-Propeller And Pkd Domains From An
Archaeal Surface Layer Protein
pdb|1L0Q|D Chain D, Tandem Yvtn Beta-Propeller And Pkd Domains From An
Archaeal Surface Layer Protein
Length = 391
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 19/119 (15%)
Query: 353 SLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELI--------GTLKMNGTVRSLAFADDG 404
S + VSPD G + Y+ +S T +I GT+K + LA + DG
Sbjct: 75 SPQGVAVSPD-------GKQVYVTNXASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDG 127
Query: 405 KQL-LSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGT-FFAAGSDSGIVNV 461
K+L +++ GD V + T+ I+ G A+ +PDGT + A DS ++V
Sbjct: 128 KKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAV--TPDGTKVYVANFDSXSISV 184
>pdb|3NO2|A Chain A, Crystal Structure Of A Protein Of Unknown Function
(Baccac_01654) From Bacteroides Caccae At 1.35 A
Resolution
Length = 276
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 14/113 (12%)
Query: 307 CPVRKASFLPDGSQAIIA--GRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSS 364
C + A LPDG+ A++A G ++ K G E +F +++ +
Sbjct: 77 CEXQTARILPDGN-ALVAWCGHPSTILEVNXKGEVLSKTEFETGIERPHAQFRQINKNKK 135
Query: 365 VIAFVGNEGYILLVSSKTKE------LIGTLKMNGTVRSLAFADDGKQLLSSG 411
GN L +S+ +E L+ ++K++GT S AF D+G L++ G
Sbjct: 136 -----GNYLVPLFATSEVREIAPNGQLLNSVKLSGTPFSSAFLDNGDCLVACG 183
>pdb|1W36|D Chain D, Recbcd:dna Complex
pdb|1W36|G Chain G, Recbcd:dna Complex
pdb|3K70|D Chain D, Crystal Structure Of The Complete Initiation Complex Of
Recbcd
pdb|3K70|G Chain G, Crystal Structure Of The Complete Initiation Complex Of
Recbcd
Length = 608
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 63/162 (38%), Gaps = 21/162 (12%)
Query: 170 AEYVSRLRAQHVKLNPGTEWAQL-DSRSRDNDPYDESSDEET-QAVVACGYEDTEAVDDI 227
A +SRL HV GTE A L DS Y SD Q A D AV +
Sbjct: 326 ARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTV 385
Query: 228 LRTD----EDLVVKSS----AKLSPGLLEYSRLIDANADESSTGPINSVQFHRNAQLLL- 278
+ D E +++S A L L Y R +D ++ P +Q QLL
Sbjct: 386 FQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLL--QARAEPDLIIQAFNEYQLLCA 443
Query: 279 -------VAGLDRRL-RFFQIDGKRNTKIQSIFLEDCPVRKA 312
VAGL+ R+ +F Q K + S + E PV A
Sbjct: 444 LREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIA 485
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.132 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,664,135
Number of Sequences: 62578
Number of extensions: 705904
Number of successful extensions: 1490
Number of sequences better than 100.0: 66
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 1301
Number of HSP's gapped (non-prelim): 174
length of query: 564
length of database: 14,973,337
effective HSP length: 104
effective length of query: 460
effective length of database: 8,465,225
effective search space: 3894003500
effective search space used: 3894003500
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)