Query 043172
Match_columns 564
No_of_seqs 1092 out of 2669
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 13:36:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043172.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043172hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2055 WD40 repeat protein [G 100.0 3.4E-84 7.4E-89 627.6 37.4 464 64-561 49-514 (514)
2 KOG0271 Notchless-like WD40 re 100.0 7.5E-45 1.6E-49 345.7 27.8 287 256-557 109-479 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 8.1E-44 1.8E-48 343.0 24.0 284 258-557 171-458 (459)
4 KOG0286 G-protein beta subunit 100.0 6.3E-39 1.4E-43 296.1 32.0 287 256-557 49-343 (343)
5 KOG0315 G-protein beta subunit 100.0 7E-39 1.5E-43 289.5 27.0 280 275-562 11-291 (311)
6 KOG0272 U4/U6 small nuclear ri 100.0 4.1E-40 8.9E-45 317.5 19.4 273 227-512 182-458 (459)
7 KOG0279 G protein beta subunit 100.0 4.7E-37 1E-41 282.2 31.4 292 256-560 9-314 (315)
8 KOG0271 Notchless-like WD40 re 100.0 5.3E-38 1.1E-42 299.1 24.0 256 297-562 106-442 (480)
9 KOG0273 Beta-transducin family 100.0 2.2E-35 4.7E-40 288.2 29.9 281 261-560 234-524 (524)
10 cd00200 WD40 WD40 domain, foun 100.0 4.1E-34 8.9E-39 281.6 37.3 285 257-557 4-289 (289)
11 KOG0284 Polyadenylation factor 100.0 1.7E-36 3.7E-41 291.1 18.6 283 262-559 96-380 (464)
12 KOG0295 WD40 repeat-containing 100.0 1.6E-35 3.4E-40 281.0 24.6 287 257-558 103-405 (406)
13 KOG0291 WD40-repeat-containing 100.0 4.6E-34 9.9E-39 292.6 36.3 284 263-562 266-553 (893)
14 KOG0318 WD40 repeat stress pro 100.0 7.6E-34 1.6E-38 280.7 35.3 304 246-560 174-561 (603)
15 KOG0282 mRNA splicing factor [ 100.0 1E-35 2.2E-40 291.7 18.4 291 255-557 207-503 (503)
16 KOG0645 WD40 repeat protein [G 100.0 2.1E-33 4.6E-38 257.1 32.2 290 255-559 7-311 (312)
17 KOG0263 Transcription initiati 100.0 6.8E-35 1.5E-39 301.7 24.6 244 261-515 377-650 (707)
18 KOG0265 U5 snRNP-specific prot 100.0 7.1E-34 1.5E-38 263.7 28.4 291 257-558 42-337 (338)
19 KOG0273 Beta-transducin family 100.0 5.2E-34 1.1E-38 278.6 28.8 287 260-562 176-485 (524)
20 KOG0315 G-protein beta subunit 100.0 1.6E-33 3.6E-38 254.8 29.1 287 236-537 14-308 (311)
21 KOG0285 Pleiotropic regulator 100.0 8.1E-34 1.8E-38 268.4 28.2 287 258-559 147-439 (460)
22 KOG0291 WD40-repeat-containing 100.0 5.4E-33 1.2E-37 284.8 34.7 321 226-560 313-710 (893)
23 PLN00181 protein SPA1-RELATED; 100.0 1.7E-32 3.7E-37 310.7 41.7 293 258-558 479-792 (793)
24 KOG0296 Angio-associated migra 100.0 2.6E-33 5.7E-38 266.1 28.8 285 258-559 60-398 (399)
25 KOG0266 WD40 repeat-containing 100.0 5E-33 1.1E-37 294.2 33.6 287 261-559 158-454 (456)
26 KOG0299 U3 snoRNP-associated p 100.0 1.7E-33 3.6E-38 274.7 27.3 341 152-548 70-444 (479)
27 KOG0279 G protein beta subunit 100.0 8.5E-33 1.8E-37 254.2 27.0 244 257-514 58-313 (315)
28 KOG0286 G-protein beta subunit 100.0 1E-32 2.2E-37 255.1 27.6 264 238-512 66-343 (343)
29 KOG0263 Transcription initiati 100.0 1.4E-33 3E-38 291.9 24.1 250 299-560 371-650 (707)
30 KOG0318 WD40 repeat stress pro 100.0 1.7E-31 3.7E-36 264.1 36.1 307 252-561 49-519 (603)
31 KOG0293 WD40 repeat-containing 100.0 5E-33 1.1E-37 267.4 24.0 290 257-561 219-515 (519)
32 KOG0319 WD40-repeat-containing 100.0 2E-32 4.4E-37 280.4 28.5 320 228-561 70-579 (775)
33 KOG1407 WD40 repeat protein [F 100.0 2.3E-31 4.9E-36 242.6 26.9 286 258-559 16-311 (313)
34 KOG0276 Vesicle coat complex C 100.0 2E-31 4.4E-36 268.0 27.8 281 259-555 10-295 (794)
35 KOG0643 Translation initiation 100.0 1.1E-30 2.3E-35 238.9 29.2 288 258-559 6-317 (327)
36 KOG0295 WD40 repeat-containing 100.0 1.2E-31 2.6E-36 254.7 22.7 273 229-513 117-405 (406)
37 KOG0292 Vesicle coat complex C 100.0 1.2E-30 2.6E-35 271.1 27.2 286 260-559 7-321 (1202)
38 KOG0640 mRNA cleavage stimulat 100.0 6E-31 1.3E-35 244.8 22.3 292 259-559 109-426 (430)
39 KOG0268 Sof1-like rRNA process 100.0 1.6E-31 3.5E-36 253.5 18.5 280 259-559 63-345 (433)
40 KOG0316 Conserved WD40 repeat- 100.0 3.2E-30 6.9E-35 231.7 25.7 285 257-561 12-301 (307)
41 KOG0284 Polyadenylation factor 100.0 5.7E-32 1.2E-36 260.1 15.2 262 239-514 108-380 (464)
42 KOG0266 WD40 repeat-containing 100.0 4.2E-30 9E-35 272.0 30.8 278 228-514 167-454 (456)
43 KOG0319 WD40-repeat-containing 100.0 5.7E-30 1.2E-34 262.5 28.1 296 247-557 308-617 (775)
44 KOG0313 Microtubule binding pr 100.0 1.2E-29 2.5E-34 242.4 27.4 283 261-560 104-419 (423)
45 KOG0278 Serine/threonine kinas 100.0 1.4E-30 3.1E-35 235.7 19.0 285 258-561 10-299 (334)
46 KOG0288 WD40 repeat protein Ti 100.0 5.7E-31 1.2E-35 253.7 17.4 286 257-557 170-459 (459)
47 KOG0293 WD40 repeat-containing 100.0 1.9E-30 4.2E-35 249.7 20.3 276 228-515 232-514 (519)
48 KOG0281 Beta-TrCP (transducin 100.0 8.2E-31 1.8E-35 247.1 17.3 274 261-561 196-479 (499)
49 KOG0772 Uncharacterized conser 100.0 1.5E-29 3.3E-34 249.5 25.9 292 258-557 163-485 (641)
50 KOG0285 Pleiotropic regulator 100.0 6E-30 1.3E-34 242.3 21.4 250 297-562 142-392 (460)
51 KOG0645 WD40 repeat protein [G 100.0 1.4E-28 2.9E-33 225.7 28.0 272 232-514 27-311 (312)
52 KOG0973 Histone transcription 100.0 6.5E-29 1.4E-33 265.6 29.7 289 261-559 12-355 (942)
53 KOG0306 WD40-repeat-containing 100.0 7.6E-29 1.6E-33 254.3 28.4 284 258-560 369-665 (888)
54 cd00200 WD40 WD40 domain, foun 100.0 5.1E-28 1.1E-32 238.1 32.5 268 232-512 21-289 (289)
55 KOG0275 Conserved WD40 repeat- 100.0 5.9E-30 1.3E-34 239.2 17.3 285 260-557 211-507 (508)
56 KOG0283 WD40 repeat-containing 100.0 5.9E-29 1.3E-33 259.9 26.2 283 260-560 265-577 (712)
57 KOG1446 Histone H3 (Lys4) meth 100.0 4.1E-27 8.8E-32 221.0 33.9 285 258-559 10-303 (311)
58 KOG0277 Peroxisomal targeting 100.0 2.2E-28 4.8E-33 222.2 23.5 281 266-558 12-308 (311)
59 KOG0310 Conserved WD40 repeat- 100.0 3.3E-28 7.1E-33 239.5 26.6 277 262-557 26-307 (487)
60 PLN00181 protein SPA1-RELATED; 100.0 9.1E-28 2E-32 272.2 34.3 267 283-560 457-739 (793)
61 KOG0316 Conserved WD40 repeat- 100.0 2.6E-28 5.6E-33 219.4 23.1 248 298-561 9-259 (307)
62 KOG0296 Angio-associated migra 100.0 1E-27 2.2E-32 228.2 28.4 272 228-514 72-398 (399)
63 KOG0289 mRNA splicing factor [ 100.0 4.8E-28 1E-32 234.7 25.5 278 263-558 220-505 (506)
64 KOG0276 Vesicle coat complex C 100.0 6.6E-28 1.4E-32 242.8 27.1 264 229-502 22-289 (794)
65 PTZ00421 coronin; Provisional 100.0 8.3E-27 1.8E-31 246.3 35.3 272 261-540 19-314 (493)
66 KOG0282 mRNA splicing factor [ 100.0 4E-29 8.8E-34 245.5 16.1 253 297-561 205-464 (503)
67 KOG0641 WD40 repeat protein [G 100.0 1.4E-26 3E-31 207.0 30.5 288 262-559 32-349 (350)
68 KOG1446 Histone H3 (Lys4) meth 100.0 9.9E-27 2.1E-31 218.4 30.2 252 301-563 9-266 (311)
69 KOG0281 Beta-TrCP (transducin 100.0 7E-29 1.5E-33 234.1 15.4 268 234-519 209-482 (499)
70 KOG0265 U5 snRNP-specific prot 100.0 5.8E-27 1.3E-31 217.9 25.6 270 228-510 55-334 (338)
71 KOG0647 mRNA export protein (c 100.0 8.8E-27 1.9E-31 216.8 26.5 280 254-547 19-311 (347)
72 KOG0305 Anaphase promoting com 100.0 6.3E-27 1.4E-31 239.0 27.5 279 265-561 180-463 (484)
73 PTZ00420 coronin; Provisional 100.0 5.9E-26 1.3E-30 241.0 35.7 251 280-541 50-318 (568)
74 KOG0772 Uncharacterized conser 100.0 1.8E-27 3.8E-32 235.0 21.8 271 238-515 178-488 (641)
75 KOG0639 Transducin-like enhanc 100.0 1.2E-27 2.6E-32 235.2 20.5 284 260-559 417-704 (705)
76 KOG0278 Serine/threonine kinas 100.0 4.9E-28 1.1E-32 219.4 15.6 251 256-521 53-304 (334)
77 KOG2096 WD40 repeat protein [G 100.0 1.6E-26 3.5E-31 216.2 25.6 299 251-557 75-400 (420)
78 KOG0275 Conserved WD40 repeat- 100.0 9E-28 1.9E-32 224.7 17.0 250 304-562 211-470 (508)
79 KOG0292 Vesicle coat complex C 100.0 4.7E-26 1E-30 237.2 31.1 272 228-513 17-320 (1202)
80 KOG1407 WD40 repeat protein [F 100.0 1.1E-26 2.3E-31 212.2 22.4 250 300-562 14-264 (313)
81 KOG0274 Cdc4 and related F-box 100.0 4.5E-26 9.7E-31 241.1 30.0 277 261-562 207-485 (537)
82 KOG0313 Microtubule binding pr 100.0 1.9E-26 4.2E-31 220.4 23.4 274 230-514 113-418 (423)
83 KOG0289 mRNA splicing factor [ 99.9 5.1E-26 1.1E-30 220.7 25.2 273 233-513 232-505 (506)
84 PTZ00421 coronin; Provisional 99.9 3.2E-25 7E-30 234.3 33.2 229 258-494 71-315 (493)
85 KOG0310 Conserved WD40 repeat- 99.9 2.9E-26 6.3E-31 225.8 23.1 268 232-515 40-310 (487)
86 KOG0305 Anaphase promoting com 99.9 4.1E-26 8.8E-31 233.1 24.4 241 261-516 216-463 (484)
87 KOG1539 WD repeat protein [Gen 99.9 1.5E-25 3.3E-30 232.8 28.8 317 228-558 252-647 (910)
88 KOG0643 Translation initiation 99.9 5.1E-26 1.1E-30 208.3 21.8 285 223-515 12-318 (327)
89 KOG0640 mRNA cleavage stimulat 99.9 2.3E-26 5.1E-31 214.3 19.3 281 227-514 119-426 (430)
90 KOG0300 WD40 repeat-containing 99.9 1.3E-25 2.8E-30 209.8 23.1 294 256-562 142-479 (481)
91 KOG1036 Mitotic spindle checkp 99.9 6.2E-25 1.3E-29 205.4 27.2 288 259-562 10-319 (323)
92 PTZ00420 coronin; Provisional 99.9 9.5E-25 2.1E-29 231.8 31.8 242 246-495 58-319 (568)
93 KOG0288 WD40 repeat protein Ti 99.9 2.4E-26 5.1E-31 221.9 17.7 241 256-511 213-458 (459)
94 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 5.6E-24 1.2E-28 213.3 35.7 270 274-562 1-282 (300)
95 KOG0294 WD40 repeat-containing 99.9 4.8E-25 1E-29 206.4 25.3 247 252-516 33-283 (362)
96 KOG0306 WD40-repeat-containing 99.9 3.1E-25 6.8E-30 227.9 25.1 259 245-515 397-665 (888)
97 KOG0308 Conserved WD40 repeat- 99.9 4.9E-26 1.1E-30 230.6 17.8 288 260-559 19-327 (735)
98 KOG0274 Cdc4 and related F-box 99.9 1.3E-24 2.8E-29 230.1 28.8 269 232-522 218-490 (537)
99 KOG0294 WD40 repeat-containing 99.9 3.9E-24 8.4E-29 200.3 26.7 265 277-561 4-283 (362)
100 KOG0277 Peroxisomal targeting 99.9 2.8E-25 6E-30 202.1 18.5 242 261-513 59-308 (311)
101 KOG1332 Vesicle coat complex C 99.9 3.7E-25 8.1E-30 200.3 18.7 252 259-515 8-287 (299)
102 KOG0301 Phospholipase A2-activ 99.9 2.6E-24 5.7E-29 219.7 26.1 279 257-561 9-290 (745)
103 KOG0308 Conserved WD40 repeat- 99.9 9.1E-25 2E-29 221.5 21.8 321 231-560 36-394 (735)
104 KOG0650 WD40 repeat nucleolar 99.9 3.2E-24 7E-29 215.5 25.0 289 256-556 394-732 (733)
105 KOG0973 Histone transcription 99.9 3.4E-24 7.3E-29 229.6 26.0 248 258-516 65-357 (942)
106 KOG1273 WD40 repeat protein [G 99.9 5.4E-24 1.2E-28 199.1 24.0 287 265-562 26-325 (405)
107 KOG0268 Sof1-like rRNA process 99.9 4.5E-25 9.7E-30 209.8 16.9 311 167-518 36-349 (433)
108 KOG1274 WD40 repeat protein [G 99.9 1.2E-23 2.5E-28 221.2 29.2 278 259-556 10-297 (933)
109 KOG4283 Transcription-coupled 99.9 1.1E-23 2.4E-28 195.3 25.0 294 256-559 37-365 (397)
110 KOG1408 WD40 repeat protein [F 99.9 8.1E-24 1.8E-28 215.9 26.2 285 265-560 327-714 (1080)
111 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 9.3E-23 2E-27 204.4 33.6 258 264-539 32-300 (300)
112 KOG0641 WD40 repeat protein [G 99.9 7.7E-23 1.7E-27 183.0 27.9 248 259-514 86-349 (350)
113 KOG1332 Vesicle coat complex C 99.9 2E-24 4.4E-29 195.5 17.9 251 303-559 8-286 (299)
114 KOG4328 WD40 protein [Function 99.9 7.6E-24 1.7E-28 207.1 23.2 304 250-559 174-495 (498)
115 KOG0299 U3 snoRNP-associated p 99.9 7E-24 1.5E-28 207.6 22.6 253 299-561 135-412 (479)
116 KOG0269 WD40 repeat-containing 99.9 2.3E-24 4.9E-29 222.6 19.7 290 263-560 40-341 (839)
117 KOG0264 Nucleosome remodeling 99.9 7.6E-24 1.6E-28 207.5 22.1 253 260-515 122-405 (422)
118 KOG2106 Uncharacterized conser 99.9 2.9E-22 6.3E-27 197.9 32.3 282 262-558 246-625 (626)
119 KOG2048 WD40 repeat protein [G 99.9 3E-22 6.4E-27 204.5 32.5 286 262-562 25-322 (691)
120 KOG1539 WD repeat protein [Gen 99.9 3.1E-22 6.8E-27 208.3 32.7 312 240-562 180-609 (910)
121 KOG2106 Uncharacterized conser 99.9 1.7E-21 3.6E-26 192.6 32.8 296 243-558 181-520 (626)
122 KOG1063 RNA polymerase II elon 99.9 1.7E-22 3.7E-27 206.4 25.9 296 258-561 263-650 (764)
123 KOG0646 WD40 repeat protein [G 99.9 7.7E-23 1.7E-27 200.8 22.0 254 275-540 51-330 (476)
124 KOG0269 WD40 repeat-containing 99.9 5.9E-24 1.3E-28 219.5 14.9 246 263-517 88-343 (839)
125 KOG0264 Nucleosome remodeling 99.9 7.1E-23 1.5E-27 200.7 21.3 249 303-559 121-404 (422)
126 KOG2048 WD40 repeat protein [G 99.9 1.2E-21 2.5E-26 200.2 30.5 316 240-562 88-508 (691)
127 KOG0647 mRNA export protein (c 99.9 1.1E-21 2.4E-26 182.9 25.7 257 232-502 40-313 (347)
128 KOG0300 WD40 repeat-containing 99.9 2.8E-22 6E-27 187.6 20.8 274 233-515 161-477 (481)
129 KOG0646 WD40 repeat protein [G 99.9 2.7E-22 5.9E-27 196.9 21.6 263 243-514 62-350 (476)
130 KOG1036 Mitotic spindle checkp 99.9 1.3E-21 2.8E-26 183.2 25.0 249 239-502 25-294 (323)
131 KOG0267 Microtubule severing p 99.9 6.5E-24 1.4E-28 217.6 10.3 240 252-502 18-258 (825)
132 KOG0301 Phospholipase A2-activ 99.9 9.9E-22 2.1E-26 201.0 24.1 265 226-514 19-288 (745)
133 KOG0267 Microtubule severing p 99.9 1.6E-23 3.6E-28 214.6 10.2 257 272-550 2-259 (825)
134 KOG2445 Nuclear pore complex c 99.9 4.9E-21 1.1E-25 179.0 25.0 251 304-559 11-318 (361)
135 KOG0283 WD40 repeat-containing 99.9 6.5E-22 1.4E-26 207.4 21.1 201 259-467 366-578 (712)
136 KOG1445 Tumor-specific antigen 99.9 4.9E-22 1.1E-26 200.6 19.2 129 251-382 68-201 (1012)
137 KOG0321 WD40 repeat-containing 99.9 1.6E-21 3.5E-26 197.6 23.0 288 266-561 53-393 (720)
138 KOG2919 Guanine nucleotide-bin 99.9 4.7E-21 1E-25 180.1 23.8 277 263-550 50-361 (406)
139 KOG1274 WD40 repeat protein [G 99.9 7.3E-21 1.6E-25 200.3 27.6 245 303-560 10-263 (933)
140 KOG0639 Transducin-like enhanc 99.9 5.6E-22 1.2E-26 195.5 17.8 240 261-513 464-703 (705)
141 KOG2055 WD40 repeat protein [G 99.9 1.2E-21 2.7E-26 191.9 19.9 244 259-514 254-512 (514)
142 KOG4378 Nuclear protein COP1 [ 99.9 1.3E-21 2.9E-26 192.7 20.0 271 279-564 7-285 (673)
143 KOG2445 Nuclear pore complex c 99.9 9.9E-21 2.1E-25 177.0 24.5 252 258-514 9-318 (361)
144 KOG1009 Chromatin assembly com 99.9 4.9E-21 1.1E-25 185.1 23.0 288 262-559 13-372 (434)
145 KOG1408 WD40 repeat protein [F 99.9 2.4E-21 5.2E-26 198.0 20.7 244 261-515 458-714 (1080)
146 KOG4378 Nuclear protein COP1 [ 99.9 4.6E-21 1E-25 188.9 20.2 262 264-541 36-305 (673)
147 KOG0270 WD40 repeat-containing 99.9 1.9E-20 4E-25 183.0 24.0 244 309-562 176-452 (463)
148 KOG0307 Vesicle coat complex C 99.9 7.1E-22 1.5E-26 212.8 14.3 286 266-562 10-330 (1049)
149 KOG2096 WD40 repeat protein [G 99.9 6.7E-20 1.5E-24 172.0 24.1 256 300-561 80-362 (420)
150 KOG1273 WD40 repeat protein [G 99.9 3.3E-20 7.1E-25 173.9 21.4 243 309-562 26-283 (405)
151 KOG4283 Transcription-coupled 99.9 9.9E-20 2.2E-24 169.2 23.7 211 304-518 41-280 (397)
152 PRK11028 6-phosphogluconolacto 99.9 7.4E-19 1.6E-23 179.5 32.8 273 278-559 6-304 (330)
153 KOG1538 Uncharacterized conser 99.9 3.1E-20 6.7E-25 188.6 21.5 273 264-559 14-293 (1081)
154 KOG1063 RNA polymerase II elon 99.9 2E-19 4.3E-24 184.2 25.4 308 246-558 38-390 (764)
155 KOG1034 Transcriptional repres 99.9 2.1E-19 4.4E-24 169.6 23.4 292 258-558 34-382 (385)
156 KOG2919 Guanine nucleotide-bin 99.8 1.4E-19 3E-24 170.3 21.5 249 308-563 51-331 (406)
157 KOG0302 Ribosome Assembly prot 99.8 2E-19 4.3E-24 172.4 22.2 240 260-502 149-429 (440)
158 KOG0302 Ribosome Assembly prot 99.8 1E-19 2.2E-24 174.4 20.1 246 304-557 149-436 (440)
159 COG2319 FOG: WD40 repeat [Gene 99.8 1.3E-17 2.9E-22 172.7 36.6 291 258-561 61-361 (466)
160 KOG1963 WD40 repeat protein [G 99.8 3E-18 6.4E-23 180.6 29.2 293 260-560 203-539 (792)
161 KOG4328 WD40 protein [Function 99.8 2.8E-19 6.1E-24 175.3 20.1 258 298-561 178-452 (498)
162 KOG0270 WD40 repeat-containing 99.8 4.8E-19 1E-23 173.2 21.4 247 264-519 175-454 (463)
163 KOG1007 WD repeat protein TSSC 99.8 1.1E-18 2.3E-23 162.0 22.4 269 283-559 39-361 (370)
164 KOG4227 WD40 repeat protein [G 99.8 4.7E-19 1E-23 170.2 20.6 293 258-558 52-386 (609)
165 KOG0321 WD40 repeat-containing 99.8 4.8E-19 1E-23 179.9 20.9 251 258-516 96-393 (720)
166 KOG1188 WD40 repeat protein [G 99.8 4.8E-19 1.1E-23 168.0 19.4 274 275-558 41-345 (376)
167 COG2319 FOG: WD40 repeat [Gene 99.8 1.6E-16 3.5E-21 164.6 38.1 302 243-560 135-443 (466)
168 KOG0322 G-protein beta subunit 99.8 1.4E-18 3E-23 159.5 18.0 290 258-558 10-322 (323)
169 KOG0307 Vesicle coat complex C 99.8 5.2E-19 1.1E-23 190.9 16.5 249 261-517 63-330 (1049)
170 KOG0650 WD40 repeat nucleolar 99.8 5.9E-18 1.3E-22 170.7 22.5 246 299-561 393-682 (733)
171 KOG0642 Cell-cycle nuclear pro 99.8 8.1E-19 1.8E-23 176.3 15.6 255 257-520 289-567 (577)
172 KOG2110 Uncharacterized conser 99.8 4.8E-17 1E-21 156.1 25.9 238 307-561 6-250 (391)
173 KOG0649 WD40 repeat protein [G 99.8 5.5E-17 1.2E-21 147.3 24.5 274 264-557 12-314 (325)
174 KOG1009 Chromatin assembly com 99.8 1.3E-17 2.8E-22 161.6 21.6 273 234-518 28-376 (434)
175 PRK11028 6-phosphogluconolacto 99.8 2.1E-16 4.5E-21 161.4 31.8 248 261-514 33-304 (330)
176 KOG1538 Uncharacterized conser 99.8 7.1E-18 1.5E-22 171.6 19.5 251 246-517 37-296 (1081)
177 KOG1524 WD40 repeat-containing 99.8 1.1E-17 2.3E-22 166.8 19.6 262 260-555 12-282 (737)
178 KOG0771 Prolactin regulatory e 99.8 4.1E-17 8.9E-22 159.3 22.9 200 355-559 148-354 (398)
179 KOG0303 Actin-binding protein 99.8 1.8E-17 4E-22 159.8 19.3 213 301-518 76-298 (472)
180 KOG1517 Guanine nucleotide bin 99.8 7.5E-17 1.6E-21 172.0 25.3 294 258-560 1060-1382(1387)
181 KOG1034 Transcriptional repres 99.8 2.2E-17 4.9E-22 155.9 18.8 247 260-514 87-383 (385)
182 KOG1587 Cytoplasmic dynein int 99.8 2.6E-16 5.6E-21 165.9 28.6 265 284-559 222-516 (555)
183 PRK01742 tolB translocation pr 99.8 5.5E-17 1.2E-21 171.2 23.2 234 283-540 183-426 (429)
184 KOG0290 Conserved WD40 repeat- 99.8 2.5E-16 5.5E-21 146.5 24.0 285 263-556 45-362 (364)
185 KOG2110 Uncharacterized conser 99.8 2.5E-15 5.5E-20 144.4 30.7 279 262-560 5-331 (391)
186 KOG1007 WD repeat protein TSSC 99.8 1.3E-16 2.9E-21 148.2 20.2 255 258-516 59-363 (370)
187 KOG4497 Uncharacterized conser 99.7 2E-16 4.2E-21 149.5 21.4 280 267-559 13-391 (447)
188 KOG1240 Protein kinase contain 99.7 8.3E-16 1.8E-20 166.6 27.3 294 257-557 1043-1431(1431)
189 KOG2139 WD40 repeat protein [G 99.7 1.2E-15 2.6E-20 146.0 24.7 291 261-558 97-430 (445)
190 KOG1587 Cytoplasmic dynein int 99.7 4.3E-16 9.3E-21 164.2 23.9 249 261-515 241-517 (555)
191 KOG0303 Actin-binding protein 99.7 4.1E-16 8.9E-21 150.6 21.0 238 226-467 38-296 (472)
192 KOG1523 Actin-related protein 99.7 4.2E-16 9.2E-21 147.0 19.1 230 262-497 10-264 (361)
193 KOG0642 Cell-cycle nuclear pro 99.7 8.4E-17 1.8E-21 161.9 14.9 246 301-559 289-561 (577)
194 KOG1963 WD40 repeat protein [G 99.7 3.7E-15 8E-20 157.5 27.8 281 268-560 22-376 (792)
195 KOG0644 Uncharacterized conser 99.7 1.4E-17 3E-22 173.5 8.8 285 250-559 178-468 (1113)
196 KOG2321 WD40 repeat protein [G 99.7 2.9E-15 6.3E-20 150.9 25.0 281 260-560 49-344 (703)
197 KOG1334 WD40 repeat protein [G 99.7 8.7E-17 1.9E-21 159.1 13.8 304 249-559 129-466 (559)
198 KOG1272 WD40-repeat-containing 99.7 2.3E-17 4.9E-22 162.2 9.2 232 306-557 129-360 (545)
199 PRK03629 tolB translocation pr 99.7 8.3E-15 1.8E-19 154.4 29.4 236 284-539 179-427 (429)
200 PF02239 Cytochrom_D1: Cytochr 99.7 9.5E-15 2.1E-19 149.8 27.6 286 265-562 39-350 (369)
201 KOG0771 Prolactin regulatory e 99.7 3.1E-16 6.6E-21 153.2 15.4 197 266-466 148-355 (398)
202 KOG1523 Actin-related protein 99.7 4.1E-15 8.9E-20 140.4 22.3 236 301-542 5-262 (361)
203 KOG1188 WD40 repeat protein [G 99.7 1.5E-15 3.3E-20 144.4 19.2 198 319-523 41-251 (376)
204 KOG2394 WD40 protein DMR-N9 [G 99.7 1.8E-15 3.8E-20 151.5 20.3 222 264-492 125-384 (636)
205 KOG0322 G-protein beta subunit 99.7 9.3E-16 2E-20 141.0 16.2 258 242-513 35-322 (323)
206 PRK01742 tolB translocation pr 99.7 1.5E-15 3.4E-20 160.2 20.5 218 259-493 200-426 (429)
207 KOG0290 Conserved WD40 repeat- 99.7 2.2E-15 4.8E-20 140.3 18.6 245 259-511 93-362 (364)
208 KOG2111 Uncharacterized conser 99.7 2.4E-14 5.3E-19 135.2 25.8 241 308-561 7-258 (346)
209 KOG1272 WD40-repeat-containing 99.7 1.3E-16 2.7E-21 157.0 10.8 270 262-552 129-402 (545)
210 PRK05137 tolB translocation pr 99.7 2.5E-14 5.5E-19 151.5 29.4 236 284-540 182-433 (435)
211 KOG4227 WD40 repeat protein [G 99.7 2.3E-15 5E-20 145.0 18.5 253 301-560 51-323 (609)
212 KOG1445 Tumor-specific antigen 99.7 1.4E-15 3.1E-20 154.2 17.7 243 270-518 587-848 (1012)
213 KOG4497 Uncharacterized conser 99.7 3.9E-14 8.5E-19 134.1 25.9 283 252-552 33-425 (447)
214 KOG1517 Guanine nucleotide bin 99.7 1.3E-14 2.8E-19 155.2 24.6 247 307-559 1065-1333(1387)
215 KOG0649 WD40 repeat protein [G 99.7 9.3E-15 2E-19 133.0 20.1 231 308-559 12-274 (325)
216 PF10282 Lactonase: Lactonase, 99.7 4.2E-13 9.1E-18 137.6 34.7 276 277-559 2-322 (345)
217 PRK04922 tolB translocation pr 99.7 3.1E-14 6.7E-19 150.6 26.1 236 284-539 184-432 (433)
218 PRK02889 tolB translocation pr 99.6 7.9E-14 1.7E-18 147.1 27.8 236 285-540 177-425 (427)
219 PRK03629 tolB translocation pr 99.6 4.5E-14 9.8E-19 148.9 25.8 217 260-492 196-427 (429)
220 KOG1240 Protein kinase contain 99.6 5E-14 1.1E-18 153.0 23.8 261 295-561 1037-1336(1431)
221 KOG1524 WD40 repeat-containing 99.6 1.7E-14 3.7E-19 144.2 18.2 209 275-513 76-285 (737)
222 KOG3881 Uncharacterized conser 99.6 5.7E-14 1.2E-18 136.0 21.2 265 260-540 53-342 (412)
223 KOG1310 WD40 repeat protein [G 99.6 8.3E-15 1.8E-19 146.8 15.2 124 256-382 44-179 (758)
224 PF10282 Lactonase: Lactonase, 99.6 2.1E-12 4.6E-17 132.4 33.5 254 263-518 37-328 (345)
225 KOG2111 Uncharacterized conser 99.6 1.1E-12 2.4E-17 124.1 27.6 233 264-515 7-257 (346)
226 COG2706 3-carboxymuconate cycl 99.6 5.5E-12 1.2E-16 122.1 32.1 275 283-560 15-322 (346)
227 PF02239 Cytochrom_D1: Cytochr 99.6 1.5E-12 3.3E-17 133.6 30.2 270 275-561 6-304 (369)
228 PRK04922 tolB translocation pr 99.6 2.1E-13 4.5E-18 144.3 24.3 217 260-492 201-432 (433)
229 PRK05137 tolB translocation pr 99.6 7.5E-13 1.6E-17 140.2 28.5 216 328-560 182-413 (435)
230 KOG2139 WD40 repeat protein [G 99.6 2.1E-13 4.6E-18 130.8 21.0 230 308-550 100-366 (445)
231 KOG2315 Predicted translation 99.6 1.9E-12 4.2E-17 130.9 28.6 274 262-559 34-390 (566)
232 PRK02889 tolB translocation pr 99.6 5.2E-13 1.1E-17 140.9 25.0 218 260-493 193-425 (427)
233 KOG0644 Uncharacterized conser 99.6 5.6E-15 1.2E-19 154.4 9.4 273 227-518 197-472 (1113)
234 TIGR02800 propeller_TolB tol-p 99.6 1.6E-12 3.6E-17 137.1 28.2 214 285-514 171-397 (417)
235 KOG2394 WD40 protein DMR-N9 [G 99.6 1.3E-13 2.7E-18 138.3 17.9 217 309-539 126-384 (636)
236 KOG3881 Uncharacterized conser 99.6 3.7E-13 7.9E-18 130.5 20.4 245 305-560 54-321 (412)
237 TIGR02658 TTQ_MADH_Hv methylam 99.6 3.3E-11 7E-16 121.2 35.2 268 284-562 27-333 (352)
238 PRK00178 tolB translocation pr 99.6 2.8E-12 6E-17 135.9 29.2 236 285-540 180-428 (430)
239 PRK04792 tolB translocation pr 99.6 2.5E-12 5.4E-17 136.3 27.8 235 285-539 199-446 (448)
240 PF08662 eIF2A: Eukaryotic tra 99.5 7E-13 1.5E-17 123.9 20.0 156 266-430 9-186 (194)
241 PRK01029 tolB translocation pr 99.5 6.5E-12 1.4E-16 132.1 28.6 240 284-541 165-426 (428)
242 COG2706 3-carboxymuconate cycl 99.5 9E-11 1.9E-15 113.7 32.5 275 260-538 37-345 (346)
243 PF08662 eIF2A: Eukaryotic tra 99.5 1.9E-12 4E-17 121.0 20.0 154 355-520 9-184 (194)
244 KOG1334 WD40 repeat protein [G 99.5 2.8E-13 6.1E-18 134.5 15.0 259 299-561 135-426 (559)
245 KOG2314 Translation initiation 99.5 7.8E-12 1.7E-16 126.0 24.6 276 264-551 212-559 (698)
246 KOG2321 WD40 repeat protein [G 99.5 4.6E-12 1E-16 128.2 22.2 244 262-522 94-351 (703)
247 TIGR02800 propeller_TolB tol-p 99.5 1.3E-11 2.9E-16 130.2 26.5 214 328-558 170-396 (417)
248 PRK00178 tolB translocation pr 99.5 1.7E-11 3.7E-16 129.9 25.9 217 260-492 196-427 (430)
249 PRK01029 tolB translocation pr 99.5 4.3E-11 9.2E-16 126.0 28.1 224 328-561 165-405 (428)
250 PRK04792 tolB translocation pr 99.5 1.2E-11 2.5E-16 131.2 23.9 216 261-492 216-446 (448)
251 KOG4547 WD40 repeat-containing 99.5 1.8E-11 3.9E-16 124.8 23.5 191 316-515 3-221 (541)
252 KOG1354 Serine/threonine prote 99.4 1E-11 2.3E-16 118.6 19.8 284 262-561 25-361 (433)
253 KOG2041 WD40 repeat protein [G 99.4 2.5E-11 5.5E-16 125.4 21.2 290 258-559 10-337 (1189)
254 COG4946 Uncharacterized protei 99.4 8.4E-10 1.8E-14 109.7 28.1 190 270-467 274-479 (668)
255 KOG2315 Predicted translation 99.4 1.8E-10 3.9E-15 116.8 23.4 235 266-515 129-391 (566)
256 COG5354 Uncharacterized protei 99.4 2.4E-10 5.2E-15 114.6 23.9 278 261-559 31-348 (561)
257 KOG0280 Uncharacterized conser 99.3 2.8E-10 6E-15 106.9 22.4 268 283-558 45-332 (339)
258 COG5354 Uncharacterized protei 99.3 1.6E-09 3.5E-14 108.8 27.9 278 263-560 72-396 (561)
259 KOG4190 Uncharacterized conser 99.3 1.1E-11 2.4E-16 124.6 12.1 284 258-555 731-1032(1034)
260 KOG1409 Uncharacterized conser 99.3 3.7E-10 8E-15 108.2 21.2 252 253-515 15-271 (404)
261 TIGR02658 TTQ_MADH_Hv methylam 99.3 8.4E-09 1.8E-13 103.9 31.9 237 270-522 53-338 (352)
262 KOG1310 WD40 repeat protein [G 99.3 1E-11 2.2E-16 124.9 10.1 166 391-558 49-230 (758)
263 KOG1064 RAVE (regulator of V-A 99.3 1.2E-11 2.6E-16 138.9 10.6 196 261-479 2207-2407(2439)
264 PRK04043 tolB translocation pr 99.3 5E-09 1.1E-13 109.7 29.6 193 308-515 189-401 (419)
265 PLN02919 haloacid dehalogenase 99.2 1E-08 2.2E-13 118.7 32.9 245 310-562 571-891 (1057)
266 PF04762 IKI3: IKI3 family; I 99.2 1.2E-08 2.6E-13 116.0 32.8 289 260-559 73-456 (928)
267 PLN02919 haloacid dehalogenase 99.2 7.5E-09 1.6E-13 119.8 31.7 242 266-518 571-892 (1057)
268 KOG0974 WD-repeat protein WDR6 99.2 4E-10 8.7E-15 121.8 19.5 275 261-560 6-289 (967)
269 KOG1064 RAVE (regulator of V-A 99.2 8.3E-11 1.8E-15 132.4 14.5 224 305-551 2207-2438(2439)
270 PF08450 SGL: SMP-30/Gluconola 99.2 5.7E-08 1.2E-12 94.8 33.1 222 267-502 4-245 (246)
271 KOG4547 WD40 repeat-containing 99.2 7.8E-10 1.7E-14 113.1 20.2 187 361-559 3-220 (541)
272 PF04762 IKI3: IKI3 family; I 99.2 2E-08 4.3E-13 114.2 31.9 284 263-558 22-378 (928)
273 KOG1912 WD40 repeat protein [G 99.2 1.2E-08 2.6E-13 107.1 26.6 305 246-560 39-552 (1062)
274 PF15492 Nbas_N: Neuroblastoma 99.2 3.4E-08 7.4E-13 93.4 27.3 243 267-528 2-273 (282)
275 KOG4532 WD40-like repeat conta 99.2 5.2E-09 1.1E-13 97.3 20.5 238 317-559 83-331 (344)
276 KOG1409 Uncharacterized conser 99.2 1.3E-09 2.9E-14 104.4 17.0 251 297-560 15-271 (404)
277 KOG0280 Uncharacterized conser 99.2 3E-09 6.6E-14 100.0 19.1 250 262-516 69-335 (339)
278 KOG1354 Serine/threonine prote 99.2 1.3E-09 2.8E-14 104.4 16.8 204 262-467 84-361 (433)
279 TIGR03300 assembly_YfgL outer 99.2 4.4E-08 9.6E-13 102.0 29.9 263 273-562 64-341 (377)
280 KOG0974 WD-repeat protein WDR6 99.2 1.3E-09 2.8E-14 117.9 18.4 196 308-515 89-289 (967)
281 PF07433 DUF1513: Protein of u 99.2 4.4E-08 9.6E-13 95.3 27.1 236 308-553 6-279 (305)
282 COG4946 Uncharacterized protei 99.1 2.4E-08 5.3E-13 99.5 24.3 149 258-412 355-508 (668)
283 KOG1832 HIV-1 Vpr-binding prot 99.1 3.6E-11 7.9E-16 126.9 4.3 269 249-548 1088-1378(1516)
284 KOG2041 WD40 repeat protein [G 99.1 1.1E-09 2.4E-14 113.5 14.8 236 306-550 14-279 (1189)
285 TIGR03300 assembly_YfgL outer 99.1 2.5E-08 5.3E-13 103.9 25.0 261 273-557 104-377 (377)
286 KOG2314 Translation initiation 99.1 2.5E-08 5.5E-13 101.2 22.7 240 261-515 249-574 (698)
287 PRK04043 tolB translocation pr 99.1 5.1E-08 1.1E-12 102.1 26.2 192 263-466 188-401 (419)
288 PF08450 SGL: SMP-30/Gluconola 99.1 5.8E-07 1.3E-11 87.7 30.9 221 311-548 4-244 (246)
289 COG5170 CDC55 Serine/threonine 99.0 4.1E-09 8.8E-14 99.7 13.9 282 262-557 26-365 (460)
290 PF15492 Nbas_N: Neuroblastoma 99.0 3.4E-07 7.3E-12 86.7 26.0 236 312-562 3-262 (282)
291 KOG4190 Uncharacterized conser 99.0 1.3E-09 2.8E-14 110.0 10.3 244 298-557 727-986 (1034)
292 KOG0309 Conserved WD40 repeat- 99.0 3.6E-09 7.8E-14 110.2 13.2 293 262-560 24-340 (1081)
293 KOG3914 WD repeat protein WDR4 99.0 9.7E-09 2.1E-13 100.7 14.6 162 264-431 64-232 (390)
294 KOG4532 WD40-like repeat conta 98.9 2.3E-07 5E-12 86.5 19.7 193 363-563 84-286 (344)
295 KOG1912 WD40 repeat protein [G 98.9 2.3E-07 5.1E-12 97.6 20.7 287 261-562 14-367 (1062)
296 PF13360 PQQ_2: PQQ-like domai 98.9 1.6E-06 3.5E-11 83.8 25.5 218 327-562 2-233 (238)
297 KOG1920 IkappaB kinase complex 98.9 1.1E-06 2.4E-11 97.2 26.2 204 307-518 69-326 (1265)
298 KOG0309 Conserved WD40 repeat- 98.8 1.7E-08 3.6E-13 105.4 11.4 248 264-515 69-340 (1081)
299 PF13360 PQQ_2: PQQ-like domai 98.8 7.8E-06 1.7E-10 79.0 28.9 217 283-519 2-235 (238)
300 KOG4714 Nucleoporin [Nuclear s 98.8 8.1E-08 1.8E-12 89.1 13.2 184 362-557 100-316 (319)
301 PF00930 DPPIV_N: Dipeptidyl p 98.8 5.7E-06 1.2E-10 85.2 27.9 265 271-548 1-346 (353)
302 PRK02888 nitrous-oxide reducta 98.8 3.4E-06 7.5E-11 89.5 26.1 226 317-549 140-451 (635)
303 KOG3914 WD repeat protein WDR4 98.8 7.8E-08 1.7E-12 94.4 12.6 159 310-478 66-231 (390)
304 KOG0882 Cyclophilin-related pe 98.8 1.2E-07 2.7E-12 94.0 13.8 285 261-556 8-369 (558)
305 KOG1275 PAB-dependent poly(A) 98.8 5.9E-08 1.3E-12 103.8 11.9 183 362-557 146-340 (1118)
306 KOG4714 Nucleoporin [Nuclear s 98.8 9E-08 2E-12 88.8 11.6 159 261-423 88-255 (319)
307 PF14583 Pectate_lyase22: Olig 98.7 2.1E-05 4.6E-10 79.2 29.0 284 266-559 39-381 (386)
308 PRK11138 outer membrane biogen 98.7 1.7E-05 3.7E-10 83.0 29.9 267 274-562 69-356 (394)
309 PF07433 DUF1513: Protein of u 98.7 1.6E-05 3.4E-10 77.8 26.7 224 264-501 6-275 (305)
310 KOG1832 HIV-1 Vpr-binding prot 98.7 1.2E-08 2.6E-13 108.3 4.9 220 298-546 1093-1318(1516)
311 PRK11138 outer membrane biogen 98.7 6.3E-06 1.4E-10 86.3 25.5 260 274-558 120-393 (394)
312 KOG1920 IkappaB kinase complex 98.7 9.2E-06 2E-10 90.2 25.3 202 352-562 69-325 (1265)
313 KOG2114 Vacuolar assembly/sort 98.6 6.2E-06 1.3E-10 88.4 23.2 223 264-500 27-271 (933)
314 KOG0882 Cyclophilin-related pe 98.6 7.2E-07 1.6E-11 88.8 14.9 204 259-467 50-307 (558)
315 COG0823 TolB Periplasmic compo 98.6 4.5E-06 9.8E-11 87.1 20.6 190 301-503 187-390 (425)
316 KOG2695 WD40 repeat protein [G 98.6 1.8E-07 4E-12 90.0 9.2 166 367-539 228-402 (425)
317 COG5170 CDC55 Serine/threonine 98.6 1.2E-06 2.6E-11 83.3 14.4 207 353-564 28-314 (460)
318 PF11768 DUF3312: Protein of u 98.6 6E-05 1.3E-09 78.4 28.0 118 389-515 202-330 (545)
319 KOG4649 PQQ (pyrrolo-quinoline 98.6 6.5E-05 1.4E-09 70.3 25.3 267 273-561 62-353 (354)
320 KOG2695 WD40 repeat protein [G 98.6 2.2E-07 4.8E-12 89.5 9.3 169 299-480 206-386 (425)
321 KOG2066 Vacuolar assembly/sort 98.6 2.6E-06 5.6E-11 90.7 17.7 182 307-514 40-233 (846)
322 KOG2066 Vacuolar assembly/sort 98.6 2.9E-06 6.3E-11 90.3 18.1 185 353-559 41-233 (846)
323 PF11768 DUF3312: Protein of u 98.6 4.2E-06 9.2E-11 86.8 18.9 158 285-444 185-351 (545)
324 KOG1645 RING-finger-containing 98.6 8.3E-06 1.8E-10 80.4 19.6 248 295-559 182-461 (463)
325 KOG3617 WD40 and TPR repeat-co 98.6 2.8E-06 6.1E-11 90.4 17.5 109 266-381 19-131 (1416)
326 KOG1275 PAB-dependent poly(A) 98.6 1.3E-06 2.9E-11 93.7 15.1 184 273-465 146-342 (1118)
327 PF08596 Lgl_C: Lethal giant l 98.6 6.8E-05 1.5E-09 77.6 27.4 240 264-513 3-334 (395)
328 KOG1645 RING-finger-containing 98.5 3.7E-06 8E-11 82.8 16.8 248 252-514 183-461 (463)
329 PF04053 Coatomer_WDAD: Coatom 98.5 4.2E-05 9.1E-10 80.2 24.5 227 302-559 28-262 (443)
330 COG3391 Uncharacterized conser 98.5 0.00026 5.6E-09 73.6 30.3 264 264-540 32-309 (381)
331 PF06433 Me-amine-dh_H: Methyl 98.5 0.00034 7.4E-09 69.4 28.4 247 264-525 37-331 (342)
332 PF06433 Me-amine-dh_H: Methyl 98.5 0.00044 9.6E-09 68.6 28.8 266 284-562 17-323 (342)
333 COG0823 TolB Periplasmic compo 98.4 2.2E-05 4.7E-10 82.0 20.4 181 353-546 194-386 (425)
334 KOG2114 Vacuolar assembly/sort 98.4 5.8E-05 1.3E-09 81.2 23.4 201 312-522 29-251 (933)
335 KOG3617 WD40 and TPR repeat-co 98.4 7.3E-06 1.6E-10 87.3 15.4 234 264-501 61-374 (1416)
336 PRK02888 nitrous-oxide reducta 98.4 7.9E-05 1.7E-09 79.4 23.2 218 271-502 201-451 (635)
337 COG3391 Uncharacterized conser 98.4 0.0014 2.9E-08 68.3 31.8 241 308-561 32-285 (381)
338 KOG3621 WD40 repeat-containing 98.3 9E-05 2E-09 78.2 22.2 159 261-423 32-198 (726)
339 PF06977 SdiA-regulated: SdiA- 98.3 0.00059 1.3E-08 65.8 24.4 206 346-556 17-247 (248)
340 cd00216 PQQ_DH Dehydrogenases 98.3 0.00089 1.9E-08 72.1 28.6 273 274-562 61-427 (488)
341 KOG1008 Uncharacterized conser 98.2 2.9E-07 6.2E-12 95.3 0.9 205 262-467 56-277 (783)
342 KOG3621 WD40 repeat-containing 98.2 7E-05 1.5E-09 79.1 18.1 116 306-423 33-155 (726)
343 PF02897 Peptidase_S9_N: Proly 98.2 0.0025 5.5E-08 67.2 30.4 256 251-518 110-408 (414)
344 PF14870 PSII_BNR: Photosynthe 98.2 0.0095 2.1E-07 59.2 31.4 281 262-556 16-301 (302)
345 PF00400 WD40: WD domain, G-be 98.2 7.6E-06 1.7E-10 54.6 6.4 38 297-334 2-39 (39)
346 PF00400 WD40: WD domain, G-be 98.2 7.2E-06 1.6E-10 54.7 6.1 38 473-512 2-39 (39)
347 PF08553 VID27: VID27 cytoplas 98.1 5.6E-05 1.2E-09 83.4 16.2 142 363-513 493-646 (794)
348 COG3490 Uncharacterized protei 98.1 0.00051 1.1E-08 65.4 19.8 235 309-558 70-347 (366)
349 PF03178 CPSF_A: CPSF A subuni 98.1 0.0016 3.5E-08 66.1 25.5 217 329-555 3-261 (321)
350 PF04841 Vps16_N: Vps16, N-ter 98.1 0.0047 1E-07 64.8 29.4 206 285-512 62-285 (410)
351 PF06977 SdiA-regulated: SdiA- 98.1 0.0025 5.4E-08 61.5 24.9 196 262-462 21-247 (248)
352 PF04053 Coatomer_WDAD: Coatom 98.1 0.00075 1.6E-08 70.9 22.9 219 262-514 32-262 (443)
353 PF00930 DPPIV_N: Dipeptidyl p 98.1 0.00086 1.9E-08 69.1 23.2 232 262-502 42-347 (353)
354 cd00216 PQQ_DH Dehydrogenases 98.0 0.0031 6.8E-08 67.9 27.2 231 275-524 111-434 (488)
355 COG3386 Gluconolactonase [Carb 98.0 0.0028 6E-08 63.4 24.1 221 269-502 31-275 (307)
356 PF00780 CNH: CNH domain; Int 98.0 0.007 1.5E-07 59.8 27.2 230 272-524 5-265 (275)
357 KOG1008 Uncharacterized conser 98.0 2.8E-06 6E-11 88.2 1.9 199 353-560 58-276 (783)
358 PF08596 Lgl_C: Lethal giant l 98.0 0.0012 2.5E-08 68.5 21.2 241 308-557 3-333 (395)
359 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.0 0.013 2.8E-07 63.5 30.1 148 318-467 120-335 (527)
360 KOG4649 PQQ (pyrrolo-quinoline 98.0 0.0027 5.8E-08 59.7 20.9 143 363-515 23-166 (354)
361 PRK13616 lipoprotein LpqB; Pro 97.9 0.0013 2.9E-08 71.7 21.5 213 327-554 328-563 (591)
362 PF05694 SBP56: 56kDa selenium 97.9 0.038 8.2E-07 56.6 28.9 230 317-549 86-393 (461)
363 KOG1897 Damage-specific DNA bi 97.8 0.017 3.7E-07 63.8 27.8 282 263-560 584-899 (1096)
364 KOG2395 Protein involved in va 97.8 0.00061 1.3E-08 69.9 15.8 145 361-514 343-500 (644)
365 COG5276 Uncharacterized conser 97.8 0.033 7.2E-07 53.6 28.8 277 263-559 87-369 (370)
366 COG3386 Gluconolactonase [Carb 97.8 0.0092 2E-07 59.7 23.9 222 313-548 31-274 (307)
367 PRK13684 Ycf48-like protein; P 97.8 0.054 1.2E-06 55.2 31.8 280 262-557 45-329 (334)
368 PF04841 Vps16_N: Vps16, N-ter 97.8 0.011 2.4E-07 62.0 25.3 179 263-447 81-271 (410)
369 PF14583 Pectate_lyase22: Olig 97.8 0.029 6.2E-07 57.0 26.2 226 312-549 41-302 (386)
370 PF05694 SBP56: 56kDa selenium 97.7 0.04 8.8E-07 56.4 26.9 228 273-502 86-393 (461)
371 PF03178 CPSF_A: CPSF A subuni 97.7 0.0022 4.7E-08 65.2 18.5 177 373-560 2-203 (321)
372 PF00780 CNH: CNH domain; Int 97.7 0.027 5.9E-07 55.6 25.8 220 316-562 5-258 (275)
373 PF02897 Peptidase_S9_N: Proly 97.7 0.0058 1.3E-07 64.4 22.0 205 353-559 125-357 (414)
374 PF15390 DUF4613: Domain of un 97.7 0.012 2.6E-07 61.7 22.8 151 263-422 20-186 (671)
375 PRK13616 lipoprotein LpqB; Pro 97.6 0.0041 8.8E-08 68.0 19.6 188 307-510 350-564 (591)
376 PF10647 Gmad1: Lipoprotein Lp 97.6 0.047 1E-06 53.3 24.4 166 336-503 8-186 (253)
377 PHA02713 hypothetical protein; 97.5 0.012 2.7E-07 64.2 21.5 218 329-560 273-534 (557)
378 KOG4441 Proteins containing BT 97.5 0.019 4.2E-07 62.7 22.9 235 271-516 282-548 (571)
379 COG3204 Uncharacterized protei 97.5 0.056 1.2E-06 52.3 22.8 221 330-556 65-309 (316)
380 PF07995 GSDH: Glucose / Sorbo 97.5 0.089 1.9E-06 53.6 26.2 239 309-554 4-330 (331)
381 PF08553 VID27: VID27 cytoplas 97.5 0.0029 6.3E-08 70.2 16.2 137 412-558 502-646 (794)
382 PF14870 PSII_BNR: Photosynthe 97.5 0.13 2.9E-06 51.2 28.6 230 264-511 63-301 (302)
383 KOG2079 Vacuolar assembly/sort 97.5 0.002 4.3E-08 71.5 13.9 100 274-374 99-198 (1206)
384 KOG4640 Anaphase-promoting com 97.4 0.00061 1.3E-08 71.3 9.4 92 353-445 22-115 (665)
385 PHA02713 hypothetical protein; 97.4 0.011 2.5E-07 64.5 19.9 191 317-517 303-536 (557)
386 PF05096 Glu_cyclase_2: Glutam 97.4 0.11 2.3E-06 50.2 23.8 183 353-548 46-249 (264)
387 PF14655 RAB3GAP2_N: Rab3 GTPa 97.4 0.062 1.3E-06 55.8 23.6 81 481-563 306-402 (415)
388 PRK10115 protease 2; Provision 97.4 0.28 6.1E-06 55.1 30.3 255 250-517 112-397 (686)
389 COG3490 Uncharacterized protei 97.3 0.013 2.9E-07 56.0 16.3 190 269-465 120-348 (366)
390 PLN00033 photosystem II stabil 97.3 0.3 6.5E-06 50.8 32.1 278 262-556 87-396 (398)
391 KOG4441 Proteins containing BT 97.3 0.022 4.8E-07 62.3 19.7 226 317-554 284-536 (571)
392 PF05096 Glu_cyclase_2: Glutam 97.3 0.2 4.3E-06 48.4 24.9 183 308-501 46-249 (264)
393 PF07995 GSDH: Glucose / Sorbo 97.2 0.2 4.3E-06 51.0 25.2 237 264-509 3-330 (331)
394 KOG4499 Ca2+-binding protein R 97.2 0.15 3.4E-06 47.6 21.3 219 274-501 27-273 (310)
395 PF14783 BBS2_Mid: Ciliary BBS 97.2 0.03 6.6E-07 46.3 15.0 101 354-461 2-110 (111)
396 KOG4640 Anaphase-promoting com 97.2 0.0021 4.7E-08 67.4 10.0 94 436-539 21-115 (665)
397 PHA03098 kelch-like protein; P 97.2 0.021 4.6E-07 62.3 18.4 188 272-466 293-512 (534)
398 COG3204 Uncharacterized protei 97.2 0.062 1.3E-06 52.0 18.8 160 305-466 84-264 (316)
399 TIGR02604 Piru_Ver_Nterm putat 97.1 0.28 6.1E-06 50.7 25.1 146 263-412 14-203 (367)
400 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.1 0.62 1.3E-05 50.6 29.2 150 275-427 121-338 (527)
401 KOG2079 Vacuolar assembly/sort 97.1 0.0018 3.8E-08 71.8 8.5 105 446-558 98-202 (1206)
402 TIGR03118 PEPCTERM_chp_1 conse 97.0 0.43 9.3E-06 46.7 25.3 222 265-492 25-307 (336)
403 KOG4499 Ca2+-binding protein R 96.9 0.18 3.8E-06 47.2 18.7 208 320-539 29-263 (310)
404 PRK13684 Ycf48-like protein; P 96.9 0.62 1.3E-05 47.5 25.3 152 352-512 173-329 (334)
405 PF15390 DUF4613: Domain of un 96.9 0.069 1.5E-06 56.3 17.4 150 306-466 19-187 (671)
406 TIGR02604 Piru_Ver_Nterm putat 96.8 0.62 1.3E-05 48.2 24.9 143 308-456 15-204 (367)
407 PF14783 BBS2_Mid: Ciliary BBS 96.8 0.12 2.6E-06 42.8 15.4 100 395-509 2-109 (111)
408 PF14655 RAB3GAP2_N: Rab3 GTPa 96.8 0.45 9.8E-06 49.5 23.3 78 437-520 309-404 (415)
409 PF10647 Gmad1: Lipoprotein Lp 96.8 0.11 2.5E-06 50.6 17.9 152 394-552 25-188 (253)
410 PRK10115 protease 2; Provision 96.8 0.44 9.4E-06 53.6 24.7 199 353-559 128-344 (686)
411 TIGR03606 non_repeat_PQQ dehyd 96.8 0.94 2E-05 47.7 29.3 111 263-373 30-167 (454)
412 PHA03098 kelch-like protein; P 96.8 0.19 4.1E-06 54.9 21.6 192 316-517 293-514 (534)
413 TIGR03074 PQQ_membr_DH membran 96.8 0.46 1E-05 53.6 24.6 114 318-431 194-353 (764)
414 smart00320 WD40 WD40 repeats. 96.7 0.0052 1.1E-07 39.0 5.4 37 384-420 3-40 (40)
415 smart00320 WD40 WD40 repeats. 96.6 0.0067 1.5E-07 38.5 5.4 37 298-334 4-40 (40)
416 COG5276 Uncharacterized conser 96.5 0.86 1.9E-05 44.2 25.2 195 306-514 86-285 (370)
417 KOG3630 Nuclear pore complex, 96.5 0.032 7E-07 62.6 12.6 187 266-453 45-261 (1405)
418 KOG1898 Splicing factor 3b, su 96.5 1.3 2.7E-05 50.1 24.5 71 262-332 582-667 (1205)
419 KOG2444 WD40 repeat protein [G 96.4 0.0045 9.8E-08 57.4 5.1 141 322-467 34-179 (238)
420 KOG2280 Vacuolar assembly/sort 96.3 0.45 9.8E-06 51.7 19.5 218 262-494 43-271 (829)
421 KOG2395 Protein involved in va 96.3 0.07 1.5E-06 55.4 12.9 143 273-421 344-499 (644)
422 PF12894 Apc4_WD40: Anaphase-p 96.3 0.013 2.9E-07 40.5 5.4 30 530-559 12-41 (47)
423 PF14727 PHTB1_N: PTHB1 N-term 96.2 1.9 4.1E-05 45.0 32.6 146 274-421 37-203 (418)
424 PLN02193 nitrile-specifier pro 96.2 1.1 2.5E-05 47.9 22.4 148 317-467 228-412 (470)
425 PLN02153 epithiospecifier prot 96.1 1.2 2.6E-05 45.5 21.7 147 317-466 85-285 (341)
426 KOG2444 WD40 repeat protein [G 96.1 0.015 3.3E-07 54.0 6.7 138 368-515 35-178 (238)
427 KOG1897 Damage-specific DNA bi 96.1 3.3 7.1E-05 46.7 31.9 282 262-557 353-657 (1096)
428 PHA02790 Kelch-like protein; P 96.1 0.21 4.5E-06 53.7 16.5 185 273-466 271-471 (480)
429 COG5167 VID27 Protein involved 96.0 0.39 8.5E-06 49.8 16.8 145 360-514 476-632 (776)
430 TIGR03548 mutarot_permut cycli 96.0 1.4 3.1E-05 44.5 21.5 107 317-426 72-198 (323)
431 TIGR03118 PEPCTERM_chp_1 conse 96.0 1.8 3.9E-05 42.5 24.2 222 309-539 25-307 (336)
432 KOG3630 Nuclear pore complex, 96.0 0.11 2.5E-06 58.4 13.5 148 392-547 100-261 (1405)
433 KOG3616 Selective LIM binding 96.0 0.22 4.8E-06 53.7 15.0 69 261-334 13-81 (1636)
434 PF10168 Nup88: Nuclear pore c 95.9 3.9 8.4E-05 46.0 26.6 73 353-425 86-182 (717)
435 TIGR03074 PQQ_membr_DH membran 95.9 2.5 5.4E-05 47.9 24.2 195 363-562 194-480 (764)
436 PF10433 MMS1_N: Mono-function 95.9 3.3 7.1E-05 44.9 26.4 245 262-513 43-341 (504)
437 PF12894 Apc4_WD40: Anaphase-p 95.8 0.03 6.6E-07 38.8 5.5 33 261-293 10-42 (47)
438 COG4590 ABC-type uncharacteriz 95.8 0.13 2.8E-06 52.5 12.0 163 391-561 219-388 (733)
439 PLN00033 photosystem II stabil 95.8 2.9 6.4E-05 43.5 27.4 147 354-510 241-395 (398)
440 PLN02193 nitrile-specifier pro 95.8 3.5 7.6E-05 44.2 24.1 198 317-518 175-414 (470)
441 PLN02153 epithiospecifier prot 95.8 2.8 6E-05 42.8 24.9 98 329-426 51-171 (341)
442 PHA02790 Kelch-like protein; P 95.7 0.62 1.3E-05 50.1 18.1 187 317-515 271-471 (480)
443 PF12234 Rav1p_C: RAVE protein 95.6 0.47 1E-05 51.8 16.2 111 308-422 31-156 (631)
444 PF08728 CRT10: CRT10; InterP 95.6 0.44 9.5E-06 52.5 16.0 110 446-558 113-245 (717)
445 PF10168 Nup88: Nuclear pore c 95.5 0.29 6.2E-06 54.8 14.7 78 435-514 84-179 (717)
446 PF02333 Phytase: Phytase; In 95.5 3.6 7.8E-05 42.2 23.6 192 316-515 66-291 (381)
447 PRK14131 N-acetylneuraminic ac 95.4 3.6 7.8E-05 42.7 21.8 85 327-413 49-149 (376)
448 COG4257 Vgb Streptogramin lyas 95.2 3.2 6.9E-05 40.1 22.0 245 261-516 60-307 (353)
449 TIGR03548 mutarot_permut cycli 95.2 0.83 1.8E-05 46.3 16.0 138 273-413 72-233 (323)
450 TIGR03547 muta_rot_YjhT mutatr 95.1 4.4 9.6E-05 41.4 22.3 84 328-413 29-128 (346)
451 PF12234 Rav1p_C: RAVE protein 95.1 0.86 1.9E-05 49.8 16.3 116 394-513 31-155 (631)
452 KOG2377 Uncharacterized conser 95.1 0.59 1.3E-05 47.9 13.9 122 391-518 65-189 (657)
453 COG3823 Glutamine cyclotransfe 95.0 1 2.2E-05 41.6 13.9 178 362-547 55-247 (262)
454 KOG2377 Uncharacterized conser 95.0 3.5 7.6E-05 42.5 19.1 131 279-411 38-172 (657)
455 TIGR03547 muta_rot_YjhT mutatr 95.0 4.8 0.0001 41.1 23.1 96 316-412 62-209 (346)
456 COG4257 Vgb Streptogramin lyas 95.0 3.7 8E-05 39.7 20.5 205 308-524 63-271 (353)
457 PF13449 Phytase-like: Esteras 94.8 5.3 0.00011 40.5 24.4 147 352-499 20-231 (326)
458 PF13449 Phytase-like: Esteras 94.7 2.2 4.8E-05 43.3 17.7 148 261-409 18-231 (326)
459 KOG2280 Vacuolar assembly/sort 94.6 2.3 4.9E-05 46.5 17.5 165 263-431 84-255 (829)
460 PRK13613 lipoprotein LpqB; Pro 94.4 9.6 0.00021 42.0 24.1 194 353-553 364-576 (599)
461 PRK14131 N-acetylneuraminic ac 94.3 7.6 0.00017 40.2 23.0 93 317-412 84-230 (376)
462 PF10214 Rrn6: RNA polymerase 94.1 13 0.00029 42.4 29.0 160 304-466 77-277 (765)
463 PF08728 CRT10: CRT10; InterP 94.1 2.7 5.8E-05 46.6 17.3 113 353-465 102-246 (717)
464 PF10395 Utp8: Utp8 family; I 94.0 12 0.00025 41.2 22.2 162 389-560 126-306 (670)
465 PF05935 Arylsulfotrans: Aryls 93.8 11 0.00025 40.4 23.3 134 326-467 126-303 (477)
466 PF14761 HPS3_N: Hermansky-Pud 93.8 5.9 0.00013 37.1 16.9 144 364-513 29-213 (215)
467 PF10313 DUF2415: Uncharacteri 93.6 0.22 4.7E-06 33.5 4.9 33 530-562 1-37 (43)
468 COG1770 PtrB Protease II [Amin 93.4 14 0.00031 40.3 23.4 201 353-560 130-349 (682)
469 PF05935 Arylsulfotrans: Aryls 93.3 14 0.0003 39.7 24.9 117 312-432 153-311 (477)
470 KOG1898 Splicing factor 3b, su 93.2 6 0.00013 45.0 18.0 172 374-559 854-1048(1205)
471 PF14761 HPS3_N: Hermansky-Pud 93.0 8 0.00017 36.2 17.1 146 405-559 29-214 (215)
472 KOG2247 WD40 repeat-containing 92.8 0.014 2.9E-07 59.9 -2.5 138 355-499 38-176 (615)
473 KOG1896 mRNA cleavage and poly 92.6 25 0.00053 41.0 24.2 177 372-558 1003-1212(1366)
474 PRK13614 lipoprotein LpqB; Pro 92.6 19 0.00041 39.4 22.5 217 327-553 320-551 (573)
475 KOG4460 Nuclear pore complex, 92.5 1.9 4.2E-05 45.1 12.2 29 437-465 105-133 (741)
476 PF02333 Phytase: Phytase; In 92.4 15 0.00032 37.9 24.2 195 267-466 58-291 (381)
477 COG3823 Glutamine cyclotransfe 92.3 7.3 0.00016 36.2 14.4 106 317-427 55-163 (262)
478 PF10395 Utp8: Utp8 family; I 92.3 21 0.00045 39.4 26.0 242 265-523 30-314 (670)
479 KOG2247 WD40 repeat-containing 92.2 0.0067 1.5E-07 62.1 -5.5 144 266-417 38-183 (615)
480 PF07569 Hira: TUP1-like enhan 92.0 1 2.3E-05 42.8 9.4 73 391-466 11-96 (219)
481 KOG2063 Vacuolar assembly/sort 92.0 12 0.00025 42.7 18.6 268 268-558 20-307 (877)
482 PF07569 Hira: TUP1-like enhan 92.0 1.5 3.3E-05 41.6 10.4 75 314-389 18-103 (219)
483 KOG1916 Nuclear protein, conta 91.9 0.22 4.8E-06 54.9 5.0 177 304-519 130-328 (1283)
484 PF14781 BBS2_N: Ciliary BBSom 91.9 7.6 0.00017 33.4 14.3 118 265-388 1-132 (136)
485 TIGR03606 non_repeat_PQQ dehyd 91.8 20 0.00043 38.0 19.6 107 307-413 30-166 (454)
486 KOG1916 Nuclear protein, conta 91.5 0.29 6.3E-06 54.0 5.4 79 259-339 129-216 (1283)
487 PF10214 Rrn6: RNA polymerase 91.5 30 0.00066 39.6 27.5 127 392-526 145-292 (765)
488 PRK05560 DNA gyrase subunit A; 91.3 32 0.00069 39.5 26.1 242 316-559 496-772 (805)
489 KOG4659 Uncharacterized conser 91.1 31 0.00067 40.6 20.3 86 257-348 342-439 (1899)
490 COG5167 VID27 Protein involved 90.9 6 0.00013 41.5 13.7 152 265-422 469-632 (776)
491 COG3292 Predicted periplasmic 90.9 20 0.00043 38.4 17.6 273 263-555 165-443 (671)
492 COG1520 FOG: WD40-like repeat 90.6 23 0.00049 36.6 27.5 153 317-479 111-277 (370)
493 PRK13615 lipoprotein LpqB; Pro 90.6 29 0.00063 37.8 23.5 157 354-515 336-503 (557)
494 KOG1520 Predicted alkaloid syn 90.6 15 0.00032 37.4 16.0 141 393-547 115-282 (376)
495 PF10313 DUF2415: Uncharacteri 89.6 1.5 3.3E-05 29.5 5.5 32 393-424 1-35 (43)
496 PF12768 Rax2: Cortical protei 89.1 17 0.00037 35.9 15.1 94 373-467 16-125 (281)
497 COG4590 ABC-type uncharacteriz 89.1 1.3 2.9E-05 45.4 7.4 155 353-518 222-390 (733)
498 KOG1230 Protein containing rep 88.8 28 0.0006 35.8 16.1 184 329-515 99-341 (521)
499 PF03022 MRJP: Major royal jel 88.7 27 0.00058 34.7 21.8 195 353-549 2-255 (287)
500 PF07250 Glyoxal_oxid_N: Glyox 88.7 24 0.00052 34.0 15.9 194 322-527 3-210 (243)
No 1
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3.4e-84 Score=627.58 Aligned_cols=464 Identities=47% Similarity=0.768 Sum_probs=415.7
Q ss_pred HHHHHHHhccCCCCCccccCCccccccccccCCCCceeeecCCCCcccCcCcccccCCCCCchhhhccCCCCCccCCccc
Q 043172 64 EMKKLENILFGSLYAPVEFGKEDEEKVQPEAETGSAVYFVDPSANSMLSVNEEDAQFSGESDDEEEAWQKKPVWVDEEEE 143 (564)
Q Consensus 64 ~~~~le~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~d~dde 143 (564)
+|.++|+++||+.+ .+.|+.||++|++......++.+ ++.++++.++..+.++.+||+|||||
T Consensus 49 ~~s~~~~~~fgd~e----------------~~~~~~lf~vd~~~~~~~~D~~~-~e~~ne~kg~~~~~~k~aaW~DedDe 111 (514)
T KOG2055|consen 49 VESEMEEVQFGDLE----------------RLEDALLFSVDQGLVNDDEDSQE-SEVDNESKGQVIPSEKPAAWEDEDDE 111 (514)
T ss_pred ccccchhhhccchh----------------hhchhhhhhccCCCcccCccccc-ccccccccCCCCcccccccccCCccc
Confidence 55556666666433 46789999999986544332222 22222222222223333699999999
Q ss_pred ccccccchhhhhhhhcccccccccchHHHHHHHHHHHHhhCCCCccccccccCCCCCCCCCCCchhhhhhhhcCCCChhh
Q 043172 144 QTNVNIAKVNRLRKLRKEEDESLISGAEYVSRLRAQHVKLNPGTEWAQLDSRSRDNDPYDESSDEETQAVVACGYEDTEA 223 (564)
Q Consensus 144 ~~~~~~~~~~r~~klr~~~~e~~~~~~ey~~rLr~~~~~~~~~p~wa~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 223 (564)
+++|.+..++|+||+|..+.|..++|++|++|||+||+|.||.|+||+.... ++++|||+ +. .
T Consensus 112 ~l~V~~~~~nr~rk~r~~e~e~~~~~~~Y~~RLr~~F~k~~~~PkWA~~~~~---~~~~DDe~--e~------------s 174 (514)
T KOG2055|consen 112 DLVVADKMTNRLRKLRTTENEGLLSGKEYKGRLREQFQKRYPVPKWAKKASG---KDSEDDEE--EG------------S 174 (514)
T ss_pred ccchhhhhhhhhhhccccccccccchHHHHHHHHHHHHHhcCCCcccccccc---cccccccc--cc------------c
Confidence 9999999999999999999999999999999999999999999999987654 11222221 11 2
Q ss_pred HHhhcccCCCeEEcCCCccCCCeeeeeeeecccCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEE
Q 043172 224 VDDILRTDEDLVVKSSAKLSPGLLEYSRLIDANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIF 303 (564)
Q Consensus 224 l~~ll~~~~~~~~~~~~~l~~~~~d~~rl~~~~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~ 303 (564)
+.++|+++..++...+..|+++.++++|++++|..++..++|+||.|||..++|++||.|++++||.++++.++.+++++
T Consensus 175 ~d~lL~tt~~yi~s~s~~Lp~~tl~~krlkDaNa~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~ 254 (514)
T KOG2055|consen 175 LDDLLKTTVGYIDSRSKLLPPGTLNIKRLKDANAAHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIH 254 (514)
T ss_pred HHHHHHhhhcccccccccCCCceeeeEeecccccCCcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeee
Confidence 57899999999997789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCcCeEEEEEeeCCC-EEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 043172 304 LEDCPVRKASFLPDGS-QAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKT 382 (564)
Q Consensus 304 ~~~~~I~~l~fspdg~-~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t 382 (564)
....||.+++|.|+|. .++++++..++++||+.+.+..++..+.++....+..+.+||++++|++.|..|.|+|....|
T Consensus 255 l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT 334 (514)
T KOG2055|consen 255 LEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKT 334 (514)
T ss_pred eccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhh
Confidence 9999999999999999 888999999999999999999999999999988999999999999999999999999999999
Q ss_pred CcEEEEeeecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEE
Q 043172 383 KELIGTLKMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVY 462 (564)
Q Consensus 383 ~~~~~~~~~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iw 462 (564)
++++.+++.++.|.+++|+.+++.|++++.+|.|++||++...|+++|.+.+++..+++|.|+++.|||+||..|.|+||
T Consensus 335 ~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIY 414 (514)
T KOG2055|consen 335 KELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIY 414 (514)
T ss_pred hhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCccc-CCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCC
Q 043172 463 NRQEFL-GGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGG 541 (564)
Q Consensus 463 d~~~~~-~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg 541 (564)
|..+.. ...|+|++++.+.++.|++|+|+||+++||++|..+++.+||.|+++++++.+||+..++.+.|+|++|||.|
T Consensus 415 d~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~s 494 (514)
T KOG2055|consen 415 DGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNS 494 (514)
T ss_pred ccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCC
Confidence 977654 5789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEcCCCeEEEEEcCCC
Q 043172 542 GFMAVGNAAGKVFLYKLNHY 561 (564)
Q Consensus 542 ~~Lasgs~dG~V~lw~l~~~ 561 (564)
.|||+|+.+|+|.+|.|+||
T Consensus 495 G~lAvGNe~grv~l~kL~hy 514 (514)
T KOG2055|consen 495 GYLAVGNEAGRVHLFKLHHY 514 (514)
T ss_pred ceEEeecCCCceeeEeeccC
Confidence 99999999999999999997
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.5e-45 Score=345.71 Aligned_cols=287 Identities=17% Similarity=0.220 Sum_probs=255.6
Q ss_pred cCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEEC
Q 043172 256 NADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDL 335 (564)
Q Consensus 256 ~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl 335 (564)
....+|.++|-|++|+|+|..|++|+.|.++++||+++ ..++.+..+|...|.|++|+|||+.|++|+.+|.|++||.
T Consensus 109 sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~T--eTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdp 186 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDT--ETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDP 186 (480)
T ss_pred cccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCC--CCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecC
Confidence 35678999999999999999999999999999999985 4578889999999999999999999999999999999999
Q ss_pred CCCceeeeccccccCCcceEEEEEcC-----CCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCCEEEE
Q 043172 336 VKAKADKIGPLVGREEKSLEFFEVSP-----DSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLS 409 (564)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~v~~~~~sp-----dg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s 409 (564)
.+|+.. ...+.+|.. .|.+++|.| ..++||+++.||.|+|||+..++++..+. |..+|+|+.|--+| +|++
T Consensus 187 ktg~~~-g~~l~gH~K-~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liyS 263 (480)
T KOG0271|consen 187 KTGQQI-GRALRGHKK-WITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYS 263 (480)
T ss_pred CCCCcc-cccccCccc-ceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEe
Confidence 998863 456777776 899999976 56799999999999999999999999888 99999999998554 7999
Q ss_pred EeCCCeEEEEECCCCceeEEEe----------------------------------------------------------
Q 043172 410 SGGDGQVYHWDLRTRTCIHRAV---------------------------------------------------------- 431 (564)
Q Consensus 410 ~s~dg~V~lwD~~~~~~~~~~~---------------------------------------------------------- 431 (564)
|+.|++|++|+...|.+.+.+.
T Consensus 264 gS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgs 343 (480)
T KOG0271|consen 264 GSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGS 343 (480)
T ss_pred cCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEec
Confidence 9999999999987654432221
Q ss_pred --------------------ecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEc
Q 043172 432 --------------------DEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFN 491 (564)
Q Consensus 432 --------------------~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fs 491 (564)
..|..-|..+.|||+++|||++|.|..|++|+.+++ +.+.+|.+|..+|+.++|+
T Consensus 344 Dd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tG-----k~lasfRGHv~~VYqvaws 418 (480)
T KOG0271|consen 344 DDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTG-----KFLASFRGHVAAVYQVAWS 418 (480)
T ss_pred CCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCc-----chhhhhhhccceeEEEEec
Confidence 112334678999999999999999999999999998 9999999999999999999
Q ss_pred CCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEE
Q 043172 492 NDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYK 557 (564)
Q Consensus 492 pdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~ 557 (564)
.|.++|++||. |.++++|++++.++...+|.+ ...|.++.|+|||+.+++|+.|..+++|.
T Consensus 419 aDsRLlVS~Sk--DsTLKvw~V~tkKl~~DLpGh---~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 419 ADSRLLVSGSK--DSTLKVWDVRTKKLKQDLPGH---ADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred cCccEEEEcCC--CceEEEEEeeeeeecccCCCC---CceEEEEEecCCCceeecCCCceEEEeec
Confidence 99999999998 999999999999888866654 47899999999999999999999999995
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=8.1e-44 Score=343.04 Aligned_cols=284 Identities=19% Similarity=0.240 Sum_probs=262.1
Q ss_pred CCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeC--CCEEEEEeCCCeEEEEEC
Q 043172 258 DESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPD--GSQAIIAGRRKFFYSLDL 335 (564)
Q Consensus 258 ~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspd--g~~l~s~~~dg~i~iwdl 335 (564)
+.+.+.||..+.|++++..|+|||.+|.++||... ....++.+.+|...|.++.|+|. +..|++|+.||++++|++
T Consensus 171 Q~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~--~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~ 248 (459)
T KOG0272|consen 171 QVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVP--QCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKL 248 (459)
T ss_pred hccCCCcceeeEeecCCCeEEEeecCCceeEeecC--CcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeecc
Confidence 45578899999999999999999999999999887 45789999999999999999996 679999999999999999
Q ss_pred CCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEeCCC
Q 043172 336 VKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGGDG 414 (564)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg 414 (564)
.+... +..+.+|.. .|..++|+|+|++|++++.|.+-++||+.+++.+.... |...|.+++|+|||.++++||.|.
T Consensus 249 ~~e~~--l~~l~gH~~-RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~ 325 (459)
T KOG0272|consen 249 SQETP--LQDLEGHLA-RVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDS 325 (459)
T ss_pred CCCcc--hhhhhcchh-hheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccc
Confidence 88764 566888875 79999999999999999999999999999998776666 899999999999999999999999
Q ss_pred eEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcC-C
Q 043172 415 QVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNN-D 493 (564)
Q Consensus 415 ~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fsp-d 493 (564)
.-+|||+++++++..+.. |...|.+++|+|+|..||+||.|++++|||++.- .+++++.+|..-|+.|.|+| .
T Consensus 326 ~~RvWDlRtgr~im~L~g-H~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r-----~~ly~ipAH~nlVS~Vk~~p~~ 399 (459)
T KOG0272|consen 326 LGRVWDLRTGRCIMFLAG-HIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR-----SELYTIPAHSNLVSQVKYSPQE 399 (459)
T ss_pred hhheeecccCcEEEEecc-cccceeeEeECCCceEEeecCCCCcEEEeeeccc-----ccceecccccchhhheEecccC
Confidence 999999999999988876 5568999999999999999999999999999986 88999999999999999999 7
Q ss_pred CcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEE
Q 043172 494 AQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYK 557 (564)
Q Consensus 494 g~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~ 557 (564)
|.+|++++. |++++||...++.+++ ...+|.+.|.+++++|+|.++++++.|.++++|.
T Consensus 400 g~fL~Tasy--D~t~kiWs~~~~~~~k---sLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 400 GYFLVTASY--DNTVKIWSTRTWSPLK---SLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred CeEEEEccc--CcceeeecCCCcccch---hhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 899999999 9999999999998877 4466779999999999999999999999999995
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=6.3e-39 Score=296.09 Aligned_cols=287 Identities=17% Similarity=0.238 Sum_probs=255.5
Q ss_pred cCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEEC
Q 043172 256 NADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDL 335 (564)
Q Consensus 256 ~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl 335 (564)
.++++|.+.|+++.|++|.++|++++.||.+.|||.- +..+.+.++.....|..++|+|.|+++++||-|+...||++
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~--TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~l 126 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSF--TTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPL 126 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcc--cccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEec
Confidence 4577899999999999999999999999999999876 44577788888999999999999999999999999999999
Q ss_pred CCC----ceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEec-CCCEEEE
Q 043172 336 VKA----KADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFAD-DGKQLLS 409 (564)
Q Consensus 336 ~~~----~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~sp-dg~~l~s 409 (564)
.+. .......+.+|.. .+.|+.|-+| ..|++++.|.+..+||+++++.+..|. |.+.|.+++++| +++.+++
T Consensus 127 s~~d~~g~~~v~r~l~gHtg-ylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvS 204 (343)
T KOG0286|consen 127 STRDAEGNVRVSRELAGHTG-YLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVS 204 (343)
T ss_pred ccccccccceeeeeecCccc-eeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEe
Confidence 854 2223345677766 7999999884 578889999999999999999999998 999999999999 9999999
Q ss_pred EeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEcc--ccccceeE
Q 043172 410 SGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIE--NLTTKVDF 487 (564)
Q Consensus 410 ~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~--~~~~~I~~ 487 (564)
|+.|+..++||++.+.+++.|..+.. .|.+++|.|+|.-|++|+.|++.++||++.. +.+..+. ....+|++
T Consensus 205 g~cD~~aklWD~R~~~c~qtF~ghes-DINsv~ffP~G~afatGSDD~tcRlyDlRaD-----~~~a~ys~~~~~~gitS 278 (343)
T KOG0286|consen 205 GGCDKSAKLWDVRSGQCVQTFEGHES-DINSVRFFPSGDAFATGSDDATCRLYDLRAD-----QELAVYSHDSIICGITS 278 (343)
T ss_pred cccccceeeeeccCcceeEeeccccc-ccceEEEccCCCeeeecCCCceeEEEeecCC-----cEEeeeccCcccCCcee
Confidence 99999999999999999999987665 7999999999999999999999999999986 5555553 45578999
Q ss_pred EEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEE
Q 043172 488 MKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYK 557 (564)
Q Consensus 488 l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~ 557 (564)
++||..|++|++|.. |.++.+||.-.++....+ .+|.++|+++..+|||..|++|+.|..++||.
T Consensus 279 v~FS~SGRlLfagy~--d~~c~vWDtlk~e~vg~L---~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 279 VAFSKSGRLLFAGYD--DFTCNVWDTLKGERVGVL---AGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EEEcccccEEEeeec--CCceeEeeccccceEEEe---eccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 999999999999977 999999999888877644 46779999999999999999999999999994
No 5
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=7e-39 Score=289.52 Aligned_cols=280 Identities=18% Similarity=0.313 Sum_probs=252.9
Q ss_pred CEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcce
Q 043172 275 QLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSL 354 (564)
Q Consensus 275 ~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v 354 (564)
-+|+++|.|.+|++|... ++.+..+++...+.|..+.+.|+++.|++++ ...|++||++++...++..+.+|.. .|
T Consensus 11 viLvsA~YDhTIRfWqa~--tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~k-NV 86 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQAL--TGICSRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTK-NV 86 (311)
T ss_pred eEEEeccCcceeeeeehh--cCeEEEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCC-ce
Confidence 489999999999999887 5668999998999999999999999999887 4579999999998877888888865 79
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecC
Q 043172 355 EFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEG 434 (564)
Q Consensus 355 ~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~ 434 (564)
..+.|..+|+.+++|+.||+++|||++...+.+.+.+..+|+++..+|+...|++|..+|.|++||+....+...+..+.
T Consensus 87 taVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~ 166 (311)
T KOG0315|consen 87 TAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPED 166 (311)
T ss_pred EEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCC
Confidence 99999999999999999999999999998888888999999999999999999999999999999999998988888887
Q ss_pred CcceEEEEECCCCCEEEEEeCCCcEEEEeCCccc-CCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEc
Q 043172 435 CINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFL-GGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHI 513 (564)
Q Consensus 435 ~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~-~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl 513 (564)
...+.++.+.|+|.+++.+...|..++|++-... .....|+..+..|.+.|..+.+|||+++||++|. |.+++||++
T Consensus 167 ~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ss--dktv~iwn~ 244 (311)
T KOG0315|consen 167 DTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSS--DKTVKIWNT 244 (311)
T ss_pred CcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecC--CceEEEEec
Confidence 7889999999999999999999999999987642 2345788889999999999999999999999999 999999999
Q ss_pred CCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCCCC
Q 043172 514 PSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNHYH 562 (564)
Q Consensus 514 ~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~~~ 562 (564)
.+. +..-....+|...++.++||.+|+||++|+.|+.+++|++...+
T Consensus 245 ~~~--~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k 291 (311)
T KOG0315|consen 245 DDF--FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGK 291 (311)
T ss_pred CCc--eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCc
Confidence 887 22222445667899999999999999999999999999998765
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.1e-40 Score=317.45 Aligned_cols=273 Identities=19% Similarity=0.215 Sum_probs=249.0
Q ss_pred hcccCCCeEEcCCCccCCCeeeeeeeecccCCCCCCCCeeEEEEcCC--CCEEEEEeCCCcEEEEEecCCCCceeEEEEe
Q 043172 227 ILRTDEDLVVKSSAKLSPGLLEYSRLIDANADESSTGPINSVQFHRN--AQLLLVAGLDRRLRFFQIDGKRNTKIQSIFL 304 (564)
Q Consensus 227 ll~~~~~~~~~~~~~l~~~~~d~~rl~~~~~~~~h~~~V~~l~fspd--g~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~ 304 (564)
.+...+..+++++-.....+|+...+....+..+|.+.|.++.|||. +..||||+.||++++|++++. .+++.+.+
T Consensus 182 ~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e--~~l~~l~g 259 (459)
T KOG0272|consen 182 SFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE--TPLQDLEG 259 (459)
T ss_pred EeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC--cchhhhhc
Confidence 35666777777777777888888888777788999999999999996 668999999999999999854 58889999
Q ss_pred CCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 043172 305 EDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKE 384 (564)
Q Consensus 305 ~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~ 384 (564)
|...|..++|+|+|++|++++.|.+-++||+.++... ....||.. .|.+++|.|||.++++||.|..-+|||++++.
T Consensus 260 H~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~El--L~QEGHs~-~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr 336 (459)
T KOG0272|consen 260 HLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSEL--LLQEGHSK-GVFSIAFQPDGSLAATGGLDSLGRVWDLRTGR 336 (459)
T ss_pred chhhheeeeecCCCceeeecccccchhhcccccchhh--Hhhccccc-ccceeEecCCCceeeccCccchhheeecccCc
Confidence 9999999999999999999999999999999998863 33566665 89999999999999999999999999999999
Q ss_pred EEEEee-ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECC-CCCEEEEEeCCCcEEEE
Q 043172 385 LIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSP-DGTFFAAGSDSGIVNVY 462 (564)
Q Consensus 385 ~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp-~g~~lasgs~dg~V~iw 462 (564)
++..+. |...|.+++|+|+|..|++||.|++++|||++..+++..+..|.. -|+.++|+| .|.+|++++.|++++||
T Consensus 337 ~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n-lVS~Vk~~p~~g~fL~TasyD~t~kiW 415 (459)
T KOG0272|consen 337 CIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN-LVSQVKYSPQEGYFLVTASYDNTVKIW 415 (459)
T ss_pred EEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccc-hhhheEecccCCeEEEEcccCcceeee
Confidence 999998 999999999999999999999999999999999999887776654 689999998 68899999999999999
Q ss_pred eCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEE
Q 043172 463 NRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIH 512 (564)
Q Consensus 463 d~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwd 512 (564)
...++ .+++++.+|.+.|.++.++|+++++++++. |.++++|.
T Consensus 416 s~~~~-----~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~--DRT~KLW~ 458 (459)
T KOG0272|consen 416 STRTW-----SPLKSLAGHEGKVISLDISPDSQAIATSSF--DRTIKLWR 458 (459)
T ss_pred cCCCc-----ccchhhcCCccceEEEEeccCCceEEEecc--Cceeeecc
Confidence 99998 999999999999999999999999999999 99999995
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.7e-37 Score=282.21 Aligned_cols=292 Identities=16% Similarity=0.202 Sum_probs=250.7
Q ss_pred cCCCCCCCCeeEEEEcCC-CCEEEEEeCCCcEEEEEecCC---CCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEE
Q 043172 256 NADESSTGPINSVQFHRN-AQLLLVAGLDRRLRFFQIDGK---RNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFY 331 (564)
Q Consensus 256 ~~~~~h~~~V~~l~fspd-g~~l~s~s~dg~I~lwd~~~~---~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~ 331 (564)
.+..+|++.|+.++..+. ...+++++.|.++.+|++... .+..+..+.+|...|..+..+++|++.++++.|+.++
T Consensus 9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lr 88 (315)
T KOG0279|consen 9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLR 88 (315)
T ss_pred eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEE
Confidence 456789999999999996 568999999999999999643 3456888999999999999999999999999999999
Q ss_pred EEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee--ecCcEEEEEEecC--CCEE
Q 043172 332 SLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK--MNGTVRSLAFADD--GKQL 407 (564)
Q Consensus 332 iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~--~~~~V~~l~~spd--g~~l 407 (564)
+||+.+++. ...+.||.. .|.+++|+|+.+.|++|+.|.+|++|++.......... +.+.|.|+.|+|+ ..+|
T Consensus 89 lWDl~~g~~--t~~f~GH~~-dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~I 165 (315)
T KOG0279|consen 89 LWDLATGES--TRRFVGHTK-DVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPII 165 (315)
T ss_pred EEEecCCcE--EEEEEecCC-ceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEE
Confidence 999999965 445788876 79999999999999999999999999987665554444 3789999999997 6899
Q ss_pred EEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeE
Q 043172 408 LSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDF 487 (564)
Q Consensus 408 ~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~ 487 (564)
++++.|++|++||+++.+....+..+.. .++.+++||||..+++|+.||.+.+||++.. +.+.++. +...|.+
T Consensus 166 vs~s~DktvKvWnl~~~~l~~~~~gh~~-~v~t~~vSpDGslcasGgkdg~~~LwdL~~~-----k~lysl~-a~~~v~s 238 (315)
T KOG0279|consen 166 VSASWDKTVKVWNLRNCQLRTTFIGHSG-YVNTVTVSPDGSLCASGGKDGEAMLWDLNEG-----KNLYSLE-AFDIVNS 238 (315)
T ss_pred EEccCCceEEEEccCCcchhhccccccc-cEEEEEECCCCCEEecCCCCceEEEEEccCC-----ceeEecc-CCCeEee
Confidence 9999999999999998887777766544 6899999999999999999999999999987 7787776 6789999
Q ss_pred EEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCC-C-----CCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCC
Q 043172 488 MKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPAN-R-----NLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNH 560 (564)
Q Consensus 488 l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~-~-----~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~ 560 (564)
++|+|+.-.|+.+. ...|+||++.+..++..+.... + ..-...+++||++|..|++|-.|+.|++|.+..
T Consensus 239 l~fspnrywL~~at---~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 239 LCFSPNRYWLCAAT---ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred EEecCCceeEeecc---CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEeec
Confidence 99999988887776 4679999999887766543321 1 123357889999999999999999999999864
No 8
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.3e-38 Score=299.06 Aligned_cols=256 Identities=21% Similarity=0.269 Sum_probs=223.7
Q ss_pred ceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEE
Q 043172 297 TKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYIL 376 (564)
Q Consensus 297 ~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~ 376 (564)
.+..++.+|..+|.|+.|+|+|.+|++|+.|.++++||+.+... .....+|.. .|.|++|+|||+.||+|+.+|.|+
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp--~~t~KgH~~-WVlcvawsPDgk~iASG~~dg~I~ 182 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETP--LFTCKGHKN-WVLCVAWSPDGKKIASGSKDGSIR 182 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCc--ceeecCCcc-EEEEEEECCCcchhhccccCCeEE
Confidence 35667889999999999999999999999999999999999876 445777776 899999999999999999999999
Q ss_pred EEECCCCcEEE-Eee-ecCcEEEEEEec-----CCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCE
Q 043172 377 LVSSKTKELIG-TLK-MNGTVRSLAFAD-----DGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTF 449 (564)
Q Consensus 377 lwd~~t~~~~~-~~~-~~~~V~~l~~sp-----dg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~ 449 (564)
+||.++++.+. .+. |...|++++|.| .+++|++++.||.|+|||+..+.++..+..|. ..|+|++|..+| +
T Consensus 183 lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT-~~VTCvrwGG~g-l 260 (480)
T KOG0271|consen 183 LWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHT-ASVTCVRWGGEG-L 260 (480)
T ss_pred EecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCc-cceEEEEEcCCc-e
Confidence 99999988764 455 899999999986 56899999999999999999999998877554 589999997655 8
Q ss_pred EEEEeCCCcEEEEeCCccc-----------------C-------------------------------------------
Q 043172 450 FAAGSDSGIVNVYNRQEFL-----------------G------------------------------------------- 469 (564)
Q Consensus 450 lasgs~dg~V~iwd~~~~~-----------------~------------------------------------------- 469 (564)
|++||.|++|++|+...+. .
T Consensus 261 iySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlV 340 (480)
T KOG0271|consen 261 IYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLV 340 (480)
T ss_pred EEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeE
Confidence 9999999999999987630 0
Q ss_pred --------------CcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEE
Q 043172 470 --------------GKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCL 535 (564)
Q Consensus 470 --------------~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l 535 (564)
...+|+..+.+|..-|+++.||||++++|++|. |..|+||+..+|+.+.. ..+|.+.|..+
T Consensus 341 SgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSF--DkSVkLW~g~tGk~las---fRGHv~~VYqv 415 (480)
T KOG0271|consen 341 SGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASF--DKSVKLWDGRTGKFLAS---FRGHVAAVYQV 415 (480)
T ss_pred EecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeec--ccceeeeeCCCcchhhh---hhhccceeEEE
Confidence 022345566689999999999999999999999 99999999999998774 46778999999
Q ss_pred EEeCCCCEEEEEcCCCeEEEEEcCCCC
Q 043172 536 DFSPGGGFMAVGNAAGKVFLYKLNHYH 562 (564)
Q Consensus 536 ~fspdg~~Lasgs~dG~V~lw~l~~~~ 562 (564)
+||.|+++|++|+.|.++++|++++-+
T Consensus 416 awsaDsRLlVS~SkDsTLKvw~V~tkK 442 (480)
T KOG0271|consen 416 AWSADSRLLVSGSKDSTLKVWDVRTKK 442 (480)
T ss_pred EeccCccEEEEcCCCceEEEEEeeeee
Confidence 999999999999999999999998654
No 9
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.2e-35 Score=288.22 Aligned_cols=281 Identities=16% Similarity=0.217 Sum_probs=250.1
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCce
Q 043172 261 STGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKA 340 (564)
Q Consensus 261 h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~ 340 (564)
.+..|++|+|+.+|.+||+|+.||.++||+.++. .+.++..|.+||.++.|+..|+||++++.|+++.+||..++..
T Consensus 234 ~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~---l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~ 310 (524)
T KOG0273|consen 234 SNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGN---LISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV 310 (524)
T ss_pred ccCCcceEEecCCCCeEEEeecCcEEEEEecCch---hhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceE
Confidence 4578999999999999999999999999998754 6778889999999999999999999999999999999999988
Q ss_pred eeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEeCCCeEEEE
Q 043172 341 DKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQVYHW 419 (564)
Q Consensus 341 ~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~V~lw 419 (564)
.+...+. .. +...+.|-.+ ..+++++.+|.|+|+-+....++.++. |.+.|.++.|+|.|.+|++++.|++++||
T Consensus 311 ~q~f~~~--s~-~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiW 386 (524)
T KOG0273|consen 311 KQQFEFH--SA-PALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIW 386 (524)
T ss_pred EEeeeec--cC-CccceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEee
Confidence 6654443 22 2245666543 467888999999999999999998888 89999999999999999999999999999
Q ss_pred ECCCCceeEEEeecCCcceEEEEECCCC---------CEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEE
Q 043172 420 DLRTRTCIHRAVDEGCINGTALCTSPDG---------TFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKF 490 (564)
Q Consensus 420 D~~~~~~~~~~~~~~~~~i~~l~~sp~g---------~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~f 490 (564)
.+....+.+.+..+. ..|..+.|+|.| ..+++++.|++|++||+..+ .|++++..|+.+|++|+|
T Consensus 387 s~~~~~~~~~l~~Hs-kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g-----v~i~~f~kH~~pVysvaf 460 (524)
T KOG0273|consen 387 SMGQSNSVHDLQAHS-KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG-----VPIHTLMKHQEPVYSVAF 460 (524)
T ss_pred ecCCCcchhhhhhhc-cceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC-----ceeEeeccCCCceEEEEe
Confidence 999888888877554 478999999865 47899999999999999998 999999999999999999
Q ss_pred cCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCC
Q 043172 491 NNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNH 560 (564)
Q Consensus 491 spdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~ 560 (564)
+|+|++||+|+. |+.|.+|+++++..++.+... +.|..++|+.+|.+|.++-.||.+++-++++
T Consensus 461 S~~g~ylAsGs~--dg~V~iws~~~~~l~~s~~~~----~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr~ 524 (524)
T KOG0273|consen 461 SPNGRYLASGSL--DGCVHIWSTKTGKLVKSYQGT----GGIFELCWNAAGDKLGACASDGSVCVLDLRK 524 (524)
T ss_pred cCCCcEEEecCC--CCeeEeccccchheeEeecCC----CeEEEEEEcCCCCEEEEEecCCCceEEEecC
Confidence 999999999999 999999999999999866543 6699999999999999999999999999863
No 10
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=4.1e-34 Score=281.56 Aligned_cols=285 Identities=22% Similarity=0.346 Sum_probs=249.4
Q ss_pred CCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECC
Q 043172 257 ADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLV 336 (564)
Q Consensus 257 ~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~ 336 (564)
+..+|.++|++++|+|++++|++++.+|.|++|++... .....+..|..++..+.|+|++++|++++.++.|++|++.
T Consensus 4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETG--ELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCC--CcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 34579999999999999999999999999999999854 3566777888899999999999999999999999999999
Q ss_pred CCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEeCCCe
Q 043172 337 KAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQ 415 (564)
Q Consensus 337 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~ 415 (564)
+++... .+..+.. .+.++.|+|++.++++++.+|.|.+|++.+++.+..+. |...|.+++|+|++.++++++.++.
T Consensus 82 ~~~~~~--~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~ 158 (289)
T cd00200 82 TGECVR--TLTGHTS-YVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGT 158 (289)
T ss_pred cccceE--EEeccCC-cEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCc
Confidence 865433 3444443 69999999998888888889999999999888888887 7889999999999988888888999
Q ss_pred EEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCc
Q 043172 416 VYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQ 495 (564)
Q Consensus 416 V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~ 495 (564)
|++||+++++.+..+..+ ...+.+++|+|+++.+++++.+|.|.+||+... +++..+..|...+.++.|+|++.
T Consensus 159 i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-----~~~~~~~~~~~~i~~~~~~~~~~ 232 (289)
T cd00200 159 IKLWDLRTGKCVATLTGH-TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG-----KCLGTLRGHENGVNSVAFSPDGY 232 (289)
T ss_pred EEEEEccccccceeEecC-ccccceEEECCCcCEEEEecCCCcEEEEECCCC-----ceecchhhcCCceEEEEEcCCCc
Confidence 999999988887777644 346899999999999999999999999999876 77888878888999999999999
Q ss_pred EEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEE
Q 043172 496 ILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYK 557 (564)
Q Consensus 496 ~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~ 557 (564)
++++++. ++.|++|++.++.....++ .+...|.+++|+|++.+|++++.||.|++|+
T Consensus 233 ~~~~~~~--~~~i~i~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 233 LLASGSE--DGTIRVWDLRTGECVQTLS---GHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEEEEcC--CCcEEEEEcCCceeEEEcc---ccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 9988886 8999999999888777665 4457899999999999999999999999996
No 11
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.7e-36 Score=291.15 Aligned_cols=283 Identities=16% Similarity=0.220 Sum_probs=248.2
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCcee
Q 043172 262 TGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKAD 341 (564)
Q Consensus 262 ~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~ 341 (564)
..+|..|.|.|+|+.|++|+..|.+.||+... ...-..++.|..+|+++.|+++|.++++|..+|.|++|+.+-..+
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~--fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnV- 172 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS--FNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNV- 172 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCce--eeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhh-
Confidence 45899999999999999999999999997643 223334577999999999999999999999999999999876553
Q ss_pred eeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEeCCCeEEEEE
Q 043172 342 KIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQVYHWD 420 (564)
Q Consensus 342 ~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~V~lwD 420 (564)
..+..|+...|++++|||+...|++++.||.|+|||....+.-..+. |.-.|.+++|+|....|+++|.|..|++||
T Consensus 173 --k~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWD 250 (464)
T KOG0284|consen 173 --KIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWD 250 (464)
T ss_pred --HHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeec
Confidence 34667775689999999999999999999999999999888877777 788999999999999999999999999999
Q ss_pred CCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCC-cEEEE
Q 043172 421 LRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDA-QILAI 499 (564)
Q Consensus 421 ~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg-~~La~ 499 (564)
.+++.|+.++..+.. .|..+.|+|+++||+++|.|..+++||+++. +.+.++.+|...|+++.|+|-. .+|.+
T Consensus 251 prSg~cl~tlh~HKn-tVl~~~f~~n~N~Llt~skD~~~kv~DiR~m-----kEl~~~r~Hkkdv~~~~WhP~~~~lfts 324 (464)
T KOG0284|consen 251 PRSGSCLATLHGHKN-TVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM-----KELFTYRGHKKDVTSLTWHPLNESLFTS 324 (464)
T ss_pred CCCcchhhhhhhccc-eEEEEEEcCCCCeeEEccCCceEEEEehhHh-----HHHHHhhcchhhheeeccccccccceee
Confidence 999999998876554 7899999999999999999999999999976 8999999999999999999955 45556
Q ss_pred EecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q 043172 500 CSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLN 559 (564)
Q Consensus 500 ~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~ 559 (564)
|+. ||.|..|.+.....+..++ ..|.+.|++++|+|=|..|++|+.|.++++|.-.
T Consensus 325 gg~--Dgsvvh~~v~~~~p~~~i~--~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 325 GGS--DGSVVHWVVGLEEPLGEIP--PAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred ccC--CCceEEEeccccccccCCC--cccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 666 9999999998555554333 4577889999999999999999999999999753
No 12
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.6e-35 Score=280.99 Aligned_cols=287 Identities=16% Similarity=0.213 Sum_probs=259.1
Q ss_pred CCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECC
Q 043172 257 ADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLV 336 (564)
Q Consensus 257 ~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~ 336 (564)
...+|..+|+.+-|||+-.++++++.|++|++||..++ .....+.+|...+..++|+..|++|++++.|-.+.+||+.
T Consensus 103 ~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg--~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~ 180 (406)
T KOG0295|consen 103 KLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETG--ELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFD 180 (406)
T ss_pred hhhccccceeeeeeccCceEEEEecCCceEEEEEccch--hhhhhhhccccceeEEEEecCccEEEecCCccchhheeHH
Confidence 34569999999999999999999999999999998854 4688899999999999999999999999999889999998
Q ss_pred CCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEeCCCe
Q 043172 337 KAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQ 415 (564)
Q Consensus 337 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~ 415 (564)
+. ..++..+.+|.. .|.+++|-|.|.+|++++.|.+|+.|++.++-++.++. |...|..+..+.||.++++++.|.+
T Consensus 181 ~~-~~c~ks~~gh~h-~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqt 258 (406)
T KOG0295|consen 181 TF-FRCIKSLIGHEH-GVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQT 258 (406)
T ss_pred HH-HHHHHHhcCccc-ceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCce
Confidence 74 234555667665 79999999999999999999999999999999999999 8889999999999999999999999
Q ss_pred EEEEECCCCceeEEEeecCCcceEEEEECCC---------------CCEEEEEeCCCcEEEEeCCcccCCcceeeEEccc
Q 043172 416 VYHWDLRTRTCIHRAVDEGCINGTALCTSPD---------------GTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIEN 480 (564)
Q Consensus 416 V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~---------------g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~ 480 (564)
|++|-+.+++|...+..+. ..+-+++|.|. ++++++|+.|++|++||+.++ .++.++.+
T Consensus 259 l~vW~~~t~~~k~~lR~hE-h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg-----~cL~tL~g 332 (406)
T KOG0295|consen 259 LRVWVVATKQCKAELREHE-HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG-----MCLFTLVG 332 (406)
T ss_pred EEEEEeccchhhhhhhccc-cceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC-----eEEEEEec
Confidence 9999999998877666443 46788888652 359999999999999999998 99999999
Q ss_pred cccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEc
Q 043172 481 LTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKL 558 (564)
Q Consensus 481 ~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l 558 (564)
|..+|..++|+|.|+||+++.. |+++++||+.+.++..+++. |...|++++|..+..|+++|+-|.++.+|.-
T Consensus 333 hdnwVr~~af~p~Gkyi~ScaD--Dktlrvwdl~~~~cmk~~~a---h~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 333 HDNWVRGVAFSPGGKYILSCAD--DKTLRVWDLKNLQCMKTLEA---HEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ccceeeeeEEcCCCeEEEEEec--CCcEEEEEeccceeeeccCC---CcceeEEEecCCCCceEEeccccceeeeeec
Confidence 9999999999999999999998 99999999999999988874 4588999999999999999999999999974
No 13
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.6e-34 Score=292.58 Aligned_cols=284 Identities=19% Similarity=0.281 Sum_probs=255.6
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCC-CeEEEEECCCCcee
Q 043172 263 GPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRR-KFFYSLDLVKAKAD 341 (564)
Q Consensus 263 ~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~d-g~i~iwdl~~~~~~ 341 (564)
..|+|.+||+...+|++|-..|...||.+. ....++.+.....+|..++|+..|.+|+.|+.. |.+-||+..+...
T Consensus 266 ~kvtaa~fH~~t~~lvvgFssG~f~LyelP--~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsY- 342 (893)
T KOG0291|consen 266 SKVTAAAFHKGTNLLVVGFSSGEFGLYELP--DFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESY- 342 (893)
T ss_pred cceeeeeccCCceEEEEEecCCeeEEEecC--CceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccce-
Confidence 789999999999999999999999999887 455888888888999999999999999998754 8999999988775
Q ss_pred eeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEeCCCeEEEEE
Q 043172 342 KIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQVYHWD 420 (564)
Q Consensus 342 ~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~V~lwD 420 (564)
+....+|.. .+.+++++|||+++|+|+.||.|+|||..++-++.++. |...|+.++|+..|+.|++++.||+|+.||
T Consensus 343 -VlKQQgH~~-~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwD 420 (893)
T KOG0291|consen 343 -VLKQQGHSD-RITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWD 420 (893)
T ss_pred -eeecccccc-ceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeee
Confidence 455667766 79999999999999999999999999999999999998 999999999999999999999999999999
Q ss_pred CCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCC-cEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEE
Q 043172 421 LRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSG-IVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAI 499 (564)
Q Consensus 421 ~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg-~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~ 499 (564)
+...++.+++..+......|++..|.|..+++|+.|. .|.||++.++ +.+-.+.+|.+||.+++|+|+|..|++
T Consensus 421 lkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG-----qllDiLsGHEgPVs~l~f~~~~~~LaS 495 (893)
T KOG0291|consen 421 LKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG-----QLLDILSGHEGPVSGLSFSPDGSLLAS 495 (893)
T ss_pred ecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC-----eeeehhcCCCCcceeeEEccccCeEEe
Confidence 9999999999988888889999999999999998875 5999999998 999999999999999999999999999
Q ss_pred EecCCCCeEEEEEcCCC-ceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCCCC
Q 043172 500 CSTMKKNSLKLIHIPSY-NVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNHYH 562 (564)
Q Consensus 500 ~s~~~d~~I~lwdl~s~-~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~~~ 562 (564)
+|. |.+||+|++-+. ....+++. ...+.+++|+|+|+-||+++-||.|.+|++....
T Consensus 496 ~SW--DkTVRiW~if~s~~~vEtl~i----~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~ 553 (893)
T KOG0291|consen 496 GSW--DKTVRIWDIFSSSGTVETLEI----RSDVLAVSFRPDGKELAVATLDGQITFFDIKEAV 553 (893)
T ss_pred ccc--cceEEEEEeeccCceeeeEee----ccceeEEEEcCCCCeEEEEEecceEEEEEhhhce
Confidence 999 999999998543 22222222 2568999999999999999999999999987543
No 14
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=7.6e-34 Score=280.71 Aligned_cols=304 Identities=19% Similarity=0.255 Sum_probs=246.9
Q ss_pred eeeeeeeecccCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEE---eCCcCeEEEEEeeCCCEEE
Q 043172 246 LLEYSRLIDANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIF---LEDCPVRKASFLPDGSQAI 322 (564)
Q Consensus 246 ~~d~~rl~~~~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~---~~~~~I~~l~fspdg~~l~ 322 (564)
.++-..++-..+.+-|..-|+|+.|+|||.+++++|.||+|.||| +.++..+..+. .|.+.|.+++|+||+++++
T Consensus 174 ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyD--Gktge~vg~l~~~~aHkGsIfalsWsPDs~~~~ 251 (603)
T KOG0318|consen 174 FFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYD--GKTGEKVGELEDSDAHKGSIFALSWSPDSTQFL 251 (603)
T ss_pred EeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEc--CCCccEEEEecCCCCccccEEEEEECCCCceEE
Confidence 333333333445566999999999999999999999999999994 55777888887 8999999999999999999
Q ss_pred EEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEe
Q 043172 323 IAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFA 401 (564)
Q Consensus 323 s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~s 401 (564)
+++.|.+++|||+.+.++.+...+...-....-.+.|. ...|++.+.+|.|.+++...+..+..+. |+..|+++..+
T Consensus 252 T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~ 329 (603)
T KOG0318|consen 252 TVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVS 329 (603)
T ss_pred EecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEc
Confidence 99999999999999998876554443322223344454 6678899999999999999999888887 99999999999
Q ss_pred cCCCEEEEEeCCCeEEEEECCCCceeE-----------EEe---------------------------------------
Q 043172 402 DDGKQLLSSGGDGQVYHWDLRTRTCIH-----------RAV--------------------------------------- 431 (564)
Q Consensus 402 pdg~~l~s~s~dg~V~lwD~~~~~~~~-----------~~~--------------------------------------- 431 (564)
|++++|++|+.||.|.-|+..++.+-. .+.
T Consensus 330 ~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~ 409 (603)
T KOG0318|consen 330 PDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPK 409 (603)
T ss_pred CCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCce
Confidence 999999999999999999987653211 000
Q ss_pred ------------------------------ecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEcccc
Q 043172 432 ------------------------------DEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENL 481 (564)
Q Consensus 432 ------------------------------~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~ 481 (564)
..-.....+++++|++..+|+|+.||.|+||.+... ..........|
T Consensus 410 ~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~---~l~ee~~~~~h 486 (603)
T KOG0318|consen 410 GLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGD---ELKEEAKLLEH 486 (603)
T ss_pred eEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCC---cccceeeeecc
Confidence 000112347889999999999999999999999874 22444456679
Q ss_pred ccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCC
Q 043172 482 TTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNH 560 (564)
Q Consensus 482 ~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~ 560 (564)
.++|++++||||+.+||++.. .+.+.+|++.+..+..+ .-.-|...|++++|||+..++|+|+-|-.|.||++..
T Consensus 487 ~a~iT~vaySpd~~yla~~Da--~rkvv~yd~~s~~~~~~--~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~k 561 (603)
T KOG0318|consen 487 RAAITDVAYSPDGAYLAAGDA--SRKVVLYDVASREVKTN--RWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKK 561 (603)
T ss_pred cCCceEEEECCCCcEEEEecc--CCcEEEEEcccCceecc--eeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccC
Confidence 999999999999999999988 89999999998877322 2233668999999999999999999999999999864
No 15
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1e-35 Score=291.73 Aligned_cols=291 Identities=18% Similarity=0.258 Sum_probs=253.7
Q ss_pred ccCCCCCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEE
Q 043172 255 ANADESSTGPINSVQFHR-NAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSL 333 (564)
Q Consensus 255 ~~~~~~h~~~V~~l~fsp-dg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iw 333 (564)
+.+..+|+..|+++.|.| .+.+|+++|.|+.|+||++-. ...+++++.+|..+|..++|+++|..+++++.|+++++|
T Consensus 207 ~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~-~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlw 285 (503)
T KOG0282|consen 207 SHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD-DRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLW 285 (503)
T ss_pred eeeccCCccccchhhhccceeeEEEecCCCceEEEEEEec-CcceehhhhcchhhhhhhhccccCCeeeeeecceeeeee
Confidence 345678999999999999 899999999999999999976 567899999999999999999999999999999999999
Q ss_pred ECCCCceeeeccccccCCcceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEe
Q 043172 334 DLVKAKADKIGPLVGREEKSLEFFEVSPDS-SVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSG 411 (564)
Q Consensus 334 dl~~~~~~~~~~~~~~~~~~v~~~~~spdg-~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s 411 (564)
|+++|++... + +....+.|+.|+|++ +.+++|+.++.|+.||+++++.++.+. |-+.|..+.|-++|+.+++++
T Consensus 286 DtETG~~~~~--f--~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissS 361 (503)
T KOG0282|consen 286 DTETGQVLSR--F--HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSS 361 (503)
T ss_pred ccccceEEEE--E--ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeec
Confidence 9999998543 2 233468999999998 888999999999999999999888887 789999999999999999999
Q ss_pred CCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccc--cceeEEE
Q 043172 412 GDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLT--TKVDFMK 489 (564)
Q Consensus 412 ~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~--~~I~~l~ 489 (564)
.|++|+||+.+.+..+..+.........++..+|++.++++-+.+..|.||.+... -....-+.+.+|. +.-..|.
T Consensus 362 Ddks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~--~r~nkkK~feGh~vaGys~~v~ 439 (503)
T KOG0282|consen 362 DDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPP--FRLNKKKRFEGHSVAGYSCQVD 439 (503)
T ss_pred cCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccc--cccCHhhhhcceeccCceeeEE
Confidence 99999999999888777666665556678999999999999999999999997654 2223334556664 4456789
Q ss_pred EcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCC-CEEEEEcCCCeEEEEE
Q 043172 490 FNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGG-GFMAVGNAAGKVFLYK 557 (564)
Q Consensus 490 fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg-~~Lasgs~dG~V~lw~ 557 (564)
|||||.+|++|+. +|.+.+||..+...+..++.+ .+.+..+.|+|.. ..+|+++.+|.|.+|+
T Consensus 440 fSpDG~~l~SGds--dG~v~~wdwkt~kl~~~lkah---~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 440 FSPDGRTLCSGDS--DGKVNFWDWKTTKLVSKLKAH---DQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EcCCCCeEEeecC--CccEEEeechhhhhhhccccC---CcceEEEEecCCCcceeEecccCceeEecC
Confidence 9999999999999 999999999999998877655 4789999999964 5799999999999996
No 16
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.1e-33 Score=257.14 Aligned_cols=290 Identities=14% Similarity=0.180 Sum_probs=240.1
Q ss_pred ccCCCCCCCCeeEEEEcCC-CCEEEEEeCCCcEEEEEecC-CCCceeEEE-EeCCcCeEEEEEeeCCCEEEEEeCCCeEE
Q 043172 255 ANADESSTGPINSVQFHRN-AQLLLVAGLDRRLRFFQIDG-KRNTKIQSI-FLEDCPVRKASFLPDGSQAIIAGRRKFFY 331 (564)
Q Consensus 255 ~~~~~~h~~~V~~l~fspd-g~~l~s~s~dg~I~lwd~~~-~~~~~~~~~-~~~~~~I~~l~fspdg~~l~s~~~dg~i~ 331 (564)
.....+|.+.|..++|||- |.+||+||.|+.|+||+... ....+...+ .+|+..|++++|+|.|++|++++.|.++.
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~ 86 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVV 86 (312)
T ss_pred EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEE
Confidence 3456789999999999997 89999999999999999873 222333333 36889999999999999999999999999
Q ss_pred EEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCC---cEEEEee-ecCcEEEEEEecCCCEE
Q 043172 332 SLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTK---ELIGTLK-MNGTVRSLAFADDGKQL 407 (564)
Q Consensus 332 iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~---~~~~~~~-~~~~V~~l~~spdg~~l 407 (564)
||.-..+....+..+.||.. .|.+++|+++|++||+++.|..|.||.+... .++..+. |...|..+.|+|...+|
T Consensus 87 Iw~k~~~efecv~~lEGHEn-EVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL 165 (312)
T KOG0645|consen 87 IWKKEDGEFECVATLEGHEN-EVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLL 165 (312)
T ss_pred EeecCCCceeEEeeeecccc-ceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCccee
Confidence 99998888888888999887 7999999999999999999999999998744 4556666 88999999999999999
Q ss_pred EEEeCCCeEEEEECCC---CceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccc
Q 043172 408 LSSGGDGQVYHWDLRT---RTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTK 484 (564)
Q Consensus 408 ~s~s~dg~V~lwD~~~---~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~ 484 (564)
++++.|.+|++|.-.. -.++.++..+.. .+.+++|++.|..|++++.|++|+||-.... .-..|...
T Consensus 166 ~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~-TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~---------~~~~~sr~ 235 (312)
T KOG0645|consen 166 FSCSYDNTIKVYRDEDDDDWECVQTLDGHEN-TVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD---------LSGMHSRA 235 (312)
T ss_pred EEeccCCeEEEEeecCCCCeeEEEEecCccc-eEEEEEecCCCceEEEecCCcceEeeeeccC---------cchhcccc
Confidence 9999999999998762 356777765554 7899999999999999999999999986543 11236688
Q ss_pred eeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccC----CCCCCCCCCcEEEEEeCC-CCEEEEEcCCCeEEEEEcC
Q 043172 485 VDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNW----PPANRNLQYPRCLDFSPG-GGFMAVGNAAGKVFLYKLN 559 (564)
Q Consensus 485 I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~----~~~~~~~~~V~~l~fspd-g~~Lasgs~dG~V~lw~l~ 559 (564)
++.+.|. ...||++++ |+.|+||.-...-.-.+| .....|...|+++.|.|. ..+|++|++||.|++|.+.
T Consensus 236 ~Y~v~W~--~~~IaS~gg--D~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 236 LYDVPWD--NGVIASGGG--DDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred eEeeeec--ccceEeccC--CCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 9999998 457888888 999999987643111111 123456678999999994 7899999999999999975
No 17
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=6.8e-35 Score=301.67 Aligned_cols=244 Identities=18% Similarity=0.272 Sum_probs=222.4
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCC-----------------------------CceeEEEEeCCcCeEE
Q 043172 261 STGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKR-----------------------------NTKIQSIFLEDCPVRK 311 (564)
Q Consensus 261 h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~-----------------------------~~~~~~~~~~~~~I~~ 311 (564)
....|+|..|++++.+||.|-.|..|++|.+.... .....++.+|.+||+.
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg 456 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYG 456 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceee
Confidence 45679999999999999999999999999987311 1123457899999999
Q ss_pred EEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-
Q 043172 312 ASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK- 390 (564)
Q Consensus 312 l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~- 390 (564)
+.|+|+.++|++++.|+++++|.+.+..+.-. ..||.. +|+.+.|+|-|-|+|+++.|++-++|.....++.+.+.
T Consensus 457 ~sFsPd~rfLlScSED~svRLWsl~t~s~~V~--y~GH~~-PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifag 533 (707)
T KOG0263|consen 457 CSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVI--YKGHLA-PVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAG 533 (707)
T ss_pred eeecccccceeeccCCcceeeeecccceeEEE--ecCCCc-ceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcc
Confidence 99999999999999999999999999887543 456665 89999999999999999999999999999999888887
Q ss_pred ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCC
Q 043172 391 MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGG 470 (564)
Q Consensus 391 ~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~ 470 (564)
|.+.|.|+.|+|++.++++||.|.+|++||+.+|.+++.|.+|. .+|++++|||+|++||+|+.+|.|.|||+..+
T Consensus 534 hlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~-~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~--- 609 (707)
T KOG0263|consen 534 HLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHK-GPVTALAFSPCGRYLASGDEDGLIKIWDLANG--- 609 (707)
T ss_pred cccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCC-CceEEEEEcCCCceEeecccCCcEEEEEcCCC---
Confidence 89999999999999999999999999999999999999988754 58999999999999999999999999999998
Q ss_pred cceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCC
Q 043172 471 KRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPS 515 (564)
Q Consensus 471 ~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s 515 (564)
.++..+.+|++.|.+|.|+.+|..||+|+. |++|++||+..
T Consensus 610 --~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~--DnsV~lWD~~~ 650 (707)
T KOG0263|consen 610 --SLVKQLKGHTGTIYSLSFSRDGNVLASGGA--DNSVRLWDLTK 650 (707)
T ss_pred --cchhhhhcccCceeEEEEecCCCEEEecCC--CCeEEEEEchh
Confidence 999999999999999999999999999999 99999999854
No 18
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=7.1e-34 Score=263.71 Aligned_cols=291 Identities=18% Similarity=0.250 Sum_probs=248.3
Q ss_pred CCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECC
Q 043172 257 ADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLV 336 (564)
Q Consensus 257 ~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~ 336 (564)
...+|++.|+.+.|+|+|.+|||||.|..|.||++.+. ..-...+.+|.+.|..+.|.++++.|+++|.|++|+.||++
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gd-ceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~ 120 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGD-CENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAE 120 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccc-ccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecc
Confidence 35679999999999999999999999999999998764 33455677999999999999999999999999999999999
Q ss_pred CCceeeeccccccCCcceEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEEeCCCe
Q 043172 337 KAKADKIGPLVGREEKSLEFFEVSPDSS-VIAFVGNEGYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSGGDGQ 415 (564)
Q Consensus 337 ~~~~~~~~~~~~~~~~~v~~~~~spdg~-~la~~~~dg~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s~dg~ 415 (564)
+|+.. ....+|.. .|+.+..+.-|. ++.+++.||+++|||+++...++++.....++++.|...+..+++|+-|+.
T Consensus 121 tG~~~--rk~k~h~~-~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ 197 (338)
T KOG0265|consen 121 TGKRI--RKHKGHTS-FVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDND 197 (338)
T ss_pred cceee--ehhccccc-eeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCc
Confidence 99974 44566654 677776444444 566788899999999999999999988889999999999999999999999
Q ss_pred EEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccc----cceeEEEEc
Q 043172 416 VYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLT----TKVDFMKFN 491 (564)
Q Consensus 416 V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~----~~I~~l~fs 491 (564)
|++||++.+..++.+..+. ..|+.+..+|.|.++.+-+.|.++++||++... ...+++..+.+|. .....++|+
T Consensus 198 ikvWd~r~~d~~~~lsGh~-DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~-p~~R~v~if~g~~hnfeknlL~csws 275 (338)
T KOG0265|consen 198 IKVWDLRKNDGLYTLSGHA-DTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFA-PSQRCVKIFQGHIHNFEKNLLKCSWS 275 (338)
T ss_pred eeeeccccCcceEEeeccc-CceeeEEeccCCCccccccccceEEEEEecccC-CCCceEEEeecchhhhhhhcceeecc
Confidence 9999999999888877554 479999999999999999999999999999762 2223355555443 344568999
Q ss_pred CCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEc
Q 043172 492 NDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKL 558 (564)
Q Consensus 492 pdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l 558 (564)
|++..+.+|+. |..+++||..+...+..+|. |.+.|++++|+|...+|.+++.|.+|++=++
T Consensus 276 p~~~~i~ags~--dr~vyvwd~~~r~~lyklpG---h~gsvn~~~Fhp~e~iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 276 PNGTKITAGSA--DRFVYVWDTTSRRILYKLPG---HYGSVNEVDFHPTEPIILSCSSDKTIYLGEI 337 (338)
T ss_pred CCCCccccccc--cceEEEeecccccEEEEcCC---cceeEEEeeecCCCcEEEEeccCceeEeecc
Confidence 99999999999 99999999998777776665 4588999999999999999999999987544
No 19
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=5.2e-34 Score=278.60 Aligned_cols=287 Identities=14% Similarity=0.184 Sum_probs=246.3
Q ss_pred CCCCCeeEEEEcCCCC-EEEEEeCCCcEEEEEecCCCCceeE--EE----------EeCCcCeEEEEEeeCCCEEEEEeC
Q 043172 260 SSTGPINSVQFHRNAQ-LLLVAGLDRRLRFFQIDGKRNTKIQ--SI----------FLEDCPVRKASFLPDGSQAIIAGR 326 (564)
Q Consensus 260 ~h~~~V~~l~fspdg~-~l~s~s~dg~I~lwd~~~~~~~~~~--~~----------~~~~~~I~~l~fspdg~~l~s~~~ 326 (564)
+|+.+|.+.+|+|-.. +|++|+.+-+.++|++....+.... .+ ......|++++|+.+|..|++|+.
T Consensus 176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~ 255 (524)
T KOG0273|consen 176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSE 255 (524)
T ss_pred cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeec
Confidence 3999999999999666 9999999999999998642111111 00 012357999999999999999999
Q ss_pred CCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCC
Q 043172 327 RKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGK 405 (564)
Q Consensus 327 dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~ 405 (564)
+|.++||+...... ..+..|. ++|.++.|+..|.||++++.|+++.+||..+++..+.+. |..+..++.|-.+.
T Consensus 256 ~G~~riw~~~G~l~---~tl~~Hk-gPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~- 330 (524)
T KOG0273|consen 256 DGEARIWNKDGNLI---STLGQHK-GPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSND- 330 (524)
T ss_pred CcEEEEEecCchhh---hhhhccC-CceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCc-
Confidence 99999999886653 3344444 589999999999999999999999999999999999988 67776889998654
Q ss_pred EEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccce
Q 043172 406 QLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKV 485 (564)
Q Consensus 406 ~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I 485 (564)
.+++++.||.|+++.+....++.++..|++ .|.++.|.|.|.+|+++|.|++++||++... ..+..+..|...|
T Consensus 331 ~F~ts~td~~i~V~kv~~~~P~~t~~GH~g-~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~-----~~~~~l~~Hskei 404 (524)
T KOG0273|consen 331 EFATSSTDGCIHVCKVGEDRPVKTFIGHHG-EVNALKWNPTGSLLASCSDDGTLKIWSMGQS-----NSVHDLQAHSKEI 404 (524)
T ss_pred eEeecCCCceEEEEEecCCCcceeeecccC-ceEEEEECCCCceEEEecCCCeeEeeecCCC-----cchhhhhhhccce
Confidence 588899999999999999999999998554 8999999999999999999999999998876 7888999999999
Q ss_pred eEEEEcCCC---------cEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEE
Q 043172 486 DFMKFNNDA---------QILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLY 556 (564)
Q Consensus 486 ~~l~fspdg---------~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw 556 (564)
..+.|+|.| ..|++++. |++|++||+..+.++..+ ..|..+|.+++|||+|+|||+|+.||.|++|
T Consensus 405 ~t~~wsp~g~v~~n~~~~~~l~sas~--dstV~lwdv~~gv~i~~f---~kH~~pVysvafS~~g~ylAsGs~dg~V~iw 479 (524)
T KOG0273|consen 405 YTIKWSPTGPVTSNPNMNLMLASASF--DSTVKLWDVESGVPIHTL---MKHQEPVYSVAFSPNGRYLASGSLDGCVHIW 479 (524)
T ss_pred eeEeecCCCCccCCCcCCceEEEeec--CCeEEEEEccCCceeEee---ccCCCceEEEEecCCCcEEEecCCCCeeEec
Confidence 999999964 46778887 999999999999988764 4456889999999999999999999999999
Q ss_pred EcCCCC
Q 043172 557 KLNHYH 562 (564)
Q Consensus 557 ~l~~~~ 562 (564)
+++.++
T Consensus 480 s~~~~~ 485 (524)
T KOG0273|consen 480 STKTGK 485 (524)
T ss_pred cccchh
Confidence 998765
No 20
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.6e-33 Score=254.78 Aligned_cols=287 Identities=15% Similarity=0.206 Sum_probs=238.4
Q ss_pred EcCCCccCCCeeeeeeeecccCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEe
Q 043172 236 VKSSAKLSPGLLEYSRLIDANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFL 315 (564)
Q Consensus 236 ~~~~~~l~~~~~d~~rl~~~~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fs 315 (564)
++.+.+.....|....-.+..+.+...+.|+.+.+.|++..||+|+ ...|++||+......++.++.+|...|.++.|.
T Consensus 14 vsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~ 92 (311)
T KOG0315|consen 14 VSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQ 92 (311)
T ss_pred EeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEEEEe
Confidence 3444555555555554444444555678899999999999999987 457999999987766899999999999999999
Q ss_pred eCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee--ecC
Q 043172 316 PDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK--MNG 393 (564)
Q Consensus 316 pdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~--~~~ 393 (564)
.+|+.+++||.||+++|||++...+.+ ...+. .+|+++..+|+...|+++..+|.|++||+....+...+. ...
T Consensus 93 ~dgrWMyTgseDgt~kIWdlR~~~~qR---~~~~~-spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~ 168 (311)
T KOG0315|consen 93 CDGRWMYTGSEDGTVKIWDLRSLSCQR---NYQHN-SPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDT 168 (311)
T ss_pred ecCeEEEecCCCceEEEEeccCcccch---hccCC-CCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCc
Confidence 999999999999999999999866544 34444 489999999999999999999999999999988777766 446
Q ss_pred cEEEEEEecCCCEEEEEeCCCeEEEEECCCCc------eeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcc
Q 043172 394 TVRSLAFADDGKQLLSSGGDGQVYHWDLRTRT------CIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEF 467 (564)
Q Consensus 394 ~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~------~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~ 467 (564)
.|.++...|+|.+|+.+...|.+++|++-... ++.++..+. ..+..+.+||++++||++|.|.+++||+....
T Consensus 169 ~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~-~~il~C~lSPd~k~lat~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 169 SIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHN-GHILRCLLSPDVKYLATCSSDKTVKIWNTDDF 247 (311)
T ss_pred ceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheeccc-ceEEEEEECCCCcEEEeecCCceEEEEecCCc
Confidence 89999999999999999999999999997643 334444443 46889999999999999999999999999875
Q ss_pred cCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEE
Q 043172 468 LGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDF 537 (564)
Q Consensus 468 ~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~f 537 (564)
.+.-..+.+|..+++.++||.||+||++|+. |+.+++|++..++.+..++.+. ....|++.
T Consensus 248 ----~kle~~l~gh~rWvWdc~FS~dg~YlvTass--d~~~rlW~~~~~k~v~qy~gh~---K~~vc~~l 308 (311)
T KOG0315|consen 248 ----FKLELVLTGHQRWVWDCAFSADGEYLVTASS--DHTARLWDLSAGKEVRQYQGHH---KAAVCVAL 308 (311)
T ss_pred ----eeeEEEeecCCceEEeeeeccCccEEEecCC--CCceeecccccCceeeecCCcc---cccEEEEe
Confidence 3566778899999999999999999999999 9999999999999888776543 44445543
No 21
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=8.1e-34 Score=268.45 Aligned_cols=287 Identities=17% Similarity=0.211 Sum_probs=255.9
Q ss_pred CCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCC
Q 043172 258 DESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVK 337 (564)
Q Consensus 258 ~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~ 337 (564)
..+|.+.|.||++.|...+|++|+.|++|+|||+.+ +.+..++.+|...|..+++|+-..||++++.|+.|+.||+..
T Consensus 147 i~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlat--g~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~ 224 (460)
T KOG0285|consen 147 ISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLAT--GQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEY 224 (460)
T ss_pred hhhccceEEEEeeCCCceeEEecCCCceeEEEEccc--CeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechh
Confidence 456999999999999999999999999999999984 457788999999999999999999999999999999999999
Q ss_pred CceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEeCCCeE
Q 043172 338 AKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQV 416 (564)
Q Consensus 338 ~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~V 416 (564)
.++ +....||-. .|.|++.+|.-..|++|+.|..++|||+++...+.++. |..+|..+.+.|-...+++|+.|++|
T Consensus 225 nkv--IR~YhGHlS-~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tv 301 (460)
T KOG0285|consen 225 NKV--IRHYHGHLS-GVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTV 301 (460)
T ss_pred hhh--HHHhccccc-eeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceE
Confidence 887 445778776 79999999999999999999999999999999999999 99999999999988889999999999
Q ss_pred EEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcE
Q 043172 417 YHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQI 496 (564)
Q Consensus 417 ~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~ 496 (564)
++||++.++....+..+ ...+.+++.+|....||+++.| .|+-|++..+ ..+..+.+|..-|++++.+.|| +
T Consensus 302 rlWDl~agkt~~tlt~h-kksvral~lhP~e~~fASas~d-nik~w~~p~g-----~f~~nlsgh~~iintl~~nsD~-v 373 (460)
T KOG0285|consen 302 RLWDLRAGKTMITLTHH-KKSVRALCLHPKENLFASASPD-NIKQWKLPEG-----EFLQNLSGHNAIINTLSVNSDG-V 373 (460)
T ss_pred EEeeeccCceeEeeecc-cceeeEEecCCchhhhhccCCc-cceeccCCcc-----chhhccccccceeeeeeeccCc-e
Confidence 99999999988777644 4578999999999999999888 7899999887 7777899999999999999887 5
Q ss_pred EEEEecCCCCeEEEEEcCCCceeccCCCCCC-----CCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q 043172 497 LAICSTMKKNSLKLIHIPSYNVFSNWPPANR-----NLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLN 559 (564)
Q Consensus 497 La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~-----~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~ 559 (564)
+++|+. +|.+.+||..++..++...+... ....|.+.+|...|..|++|..|.+|.+|.-.
T Consensus 374 ~~~G~d--ng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 374 LVSGGD--NGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred EEEcCC--ceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecc
Confidence 667776 89999999999988776533322 23468999999999999999999999999753
No 22
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.4e-33 Score=284.76 Aligned_cols=321 Identities=17% Similarity=0.262 Sum_probs=262.1
Q ss_pred hhcccCCCeEEcC-CCccCCCeeeeeeeecccCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEe
Q 043172 226 DILRTDEDLVVKS-SAKLSPGLLEYSRLIDANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFL 304 (564)
Q Consensus 226 ~ll~~~~~~~~~~-~~~l~~~~~d~~rl~~~~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~ 304 (564)
-.+..+|+.++-+ ++.....+|+.+.-.-+-.+++|...|+|++++|||+++|||+.||.|+||+.. ..-++.++..
T Consensus 313 ~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~--SgfC~vTFte 390 (893)
T KOG0291|consen 313 VSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQ--SGFCFVTFTE 390 (893)
T ss_pred EEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEecc--CceEEEEecc
Confidence 3466778887654 343345678887655666788999999999999999999999999999999887 4558899999
Q ss_pred CCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCC-eEEEEECCCC
Q 043172 305 EDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEG-YILLVSSKTK 383 (564)
Q Consensus 305 ~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg-~I~lwd~~t~ 383 (564)
|...|+.+.|+..|+.|++++-||+|+.||+...+.-+. +.........|++..|.|.+++.|+.|. .|.+|++.+|
T Consensus 391 Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRT--ft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG 468 (893)
T KOG0291|consen 391 HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRT--FTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG 468 (893)
T ss_pred CCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeee--ecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC
Confidence 999999999999999999999999999999998876554 4444444688999999999999998875 6999999999
Q ss_pred cEEEEee-ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCc-eeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEE
Q 043172 384 ELIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRT-CIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNV 461 (564)
Q Consensus 384 ~~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~i 461 (564)
+.+..+. |.++|.+++|+|.+..|++++.|.+|++||+-... .+..+...+ .++.++|+|+|+-||+++-||.|.+
T Consensus 469 qllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~s--dvl~vsfrPdG~elaVaTldgqItf 546 (893)
T KOG0291|consen 469 QLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRS--DVLAVSFRPDGKELAVATLDGQITF 546 (893)
T ss_pred eeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeecc--ceeEEEEcCCCCeEEEEEecceEEE
Confidence 9999999 99999999999999999999999999999997543 334444333 5789999999999999999999999
Q ss_pred EeCCcccCCcceeeEEcc--------------------ccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceecc
Q 043172 462 YNRQEFLGGKRKPIKTIE--------------------NLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSN 521 (564)
Q Consensus 462 wd~~~~~~~~~~~~~~~~--------------------~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~ 521 (564)
||.... ..+.++. .....++.+++++||.++++|+. .+.|.||+++++-+++.
T Consensus 547 ~d~~~~-----~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~--sn~iCiY~v~~~vllkk 619 (893)
T KOG0291|consen 547 FDIKEA-----VQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGE--SNSICIYDVPEGVLLKK 619 (893)
T ss_pred EEhhhc-----eeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCC--cccEEEEECchhheeee
Confidence 999875 2222221 23467899999999999999998 88999999987544333
Q ss_pred CCCCC-----------------------------------------------------CCCCCcEEEEEeCCCCEEEEEc
Q 043172 522 WPPAN-----------------------------------------------------RNLQYPRCLDFSPGGGFMAVGN 548 (564)
Q Consensus 522 ~~~~~-----------------------------------------------------~~~~~V~~l~fspdg~~Lasgs 548 (564)
|.... .|.-.|+++.|||.|+.+|+++
T Consensus 620 fqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsPtgraFAaat 699 (893)
T KOG0291|consen 620 FQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFSPTGRAFAAAT 699 (893)
T ss_pred EEeccccchhHHHHHhccccccccCCccccccccccccccccccCCccccCCccccccCceEEEEEEEECCCcCeeeeec
Confidence 21100 0112478999999999999999
Q ss_pred CCCeEEEEEcCC
Q 043172 549 AAGKVFLYKLNH 560 (564)
Q Consensus 549 ~dG~V~lw~l~~ 560 (564)
..| |.||.+.+
T Consensus 700 TEG-l~IYsld~ 710 (893)
T KOG0291|consen 700 TEG-LLIYSLDT 710 (893)
T ss_pred ccc-eEEEecCC
Confidence 988 88888854
No 23
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.7e-32 Score=310.72 Aligned_cols=293 Identities=14% Similarity=0.226 Sum_probs=238.9
Q ss_pred CCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCC------ceeEEEEeCCcCeEEEEEee-CCCEEEEEeCCCeE
Q 043172 258 DESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRN------TKIQSIFLEDCPVRKASFLP-DGSQAIIAGRRKFF 330 (564)
Q Consensus 258 ~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~------~~~~~~~~~~~~I~~l~fsp-dg~~l~s~~~dg~i 330 (564)
...|.+.|++++|+|++.+||+||.|+.|+||++..... .....+. +...|.+++|+| .+.+|++++.|+.|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 345999999999999999999999999999999753110 1122233 346799999987 57899999999999
Q ss_pred EEEECCCCceeeeccccccCCcceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEeeecCcEEEEEEec-CCCEEE
Q 043172 331 YSLDLVKAKADKIGPLVGREEKSLEFFEVSP-DSSVIAFVGNEGYILLVSSKTKELIGTLKMNGTVRSLAFAD-DGKQLL 408 (564)
Q Consensus 331 ~iwdl~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~la~~~~dg~I~lwd~~t~~~~~~~~~~~~V~~l~~sp-dg~~l~ 408 (564)
++||+.+++... .+.+|.. .|.+++|+| ++.+|++|+.||.|++||+.++..+..+.+...|.++.|++ ++.+|+
T Consensus 558 ~lWd~~~~~~~~--~~~~H~~-~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~la 634 (793)
T PLN00181 558 QVWDVARSQLVT--EMKEHEK-RVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLA 634 (793)
T ss_pred EEEECCCCeEEE--EecCCCC-CEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEE
Confidence 999999887633 4556654 799999997 78999999999999999999999998888777899999964 789999
Q ss_pred EEeCCCeEEEEECCCCc-eeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccC-CcceeeEEcccccccee
Q 043172 409 SSGGDGQVYHWDLRTRT-CIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLG-GKRKPIKTIENLTTKVD 486 (564)
Q Consensus 409 s~s~dg~V~lwD~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~-~~~~~~~~~~~~~~~I~ 486 (564)
+|+.||.|++||+++.. .+..+. .+...|.++.|. ++.+|++++.|++|+|||+..... ....++.++.+|...+.
T Consensus 635 tgs~dg~I~iwD~~~~~~~~~~~~-~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~ 712 (793)
T PLN00181 635 FGSADHKVYYYDLRNPKLPLCTMI-GHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKN 712 (793)
T ss_pred EEeCCCeEEEEECCCCCccceEec-CCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCee
Confidence 99999999999998765 344444 344578999997 678999999999999999975311 12367888999999999
Q ss_pred EEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCC--------C--CCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEE
Q 043172 487 FMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWP--------P--ANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLY 556 (564)
Q Consensus 487 ~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~--------~--~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw 556 (564)
+++|+|++.+|++|+. |+.|++|+.........+. . ...+...|.+++|+|++.+|++|+.+|.|+||
T Consensus 713 ~v~~s~~~~~lasgs~--D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~ 790 (793)
T PLN00181 713 FVGLSVSDGYIATGSE--TNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKIL 790 (793)
T ss_pred EEEEcCCCCEEEEEeC--CCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEE
Confidence 9999999999999998 9999999986553321111 0 12234569999999999999999999999999
Q ss_pred Ec
Q 043172 557 KL 558 (564)
Q Consensus 557 ~l 558 (564)
++
T Consensus 791 ~~ 792 (793)
T PLN00181 791 EM 792 (793)
T ss_pred ec
Confidence 86
No 24
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=2.6e-33 Score=266.08 Aligned_cols=285 Identities=15% Similarity=0.215 Sum_probs=241.6
Q ss_pred CCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCC
Q 043172 258 DESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVK 337 (564)
Q Consensus 258 ~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~ 337 (564)
...|+.+|.+++.||+.++++|||.|....||++..+ ..+..+.+|+..|+++.|+.+|.+|++|+.+|.|.||...+
T Consensus 60 F~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~g--e~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~st 137 (399)
T KOG0296|consen 60 FDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTG--EFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVST 137 (399)
T ss_pred hhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCC--cceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEccc
Confidence 4569999999999999999999999999999999844 47888999999999999999999999999999999999999
Q ss_pred CceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEeCCCeE
Q 043172 338 AKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQV 416 (564)
Q Consensus 338 ~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~V 416 (564)
+..... +.. ....|.-+.|+|-+.+|++|+.||.|.+|.+.++...+.+. |+.++++-.|.|+|+.++++..||+|
T Consensus 138 g~~~~~--~~~-e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti 214 (399)
T KOG0296|consen 138 GGEQWK--LDQ-EVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTI 214 (399)
T ss_pred CceEEE--eec-ccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceE
Confidence 876433 222 22358899999999999999999999999999987777777 89999999999999999999999999
Q ss_pred EEEECCCCceeEEEeecCCcc--------------------------------------------------eEEE---EE
Q 043172 417 YHWDLRTRTCIHRAVDEGCIN--------------------------------------------------GTAL---CT 443 (564)
Q Consensus 417 ~lwD~~~~~~~~~~~~~~~~~--------------------------------------------------i~~l---~~ 443 (564)
++|++.++++++++....... +.++ .+
T Consensus 215 ~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ 294 (399)
T KOG0296|consen 215 IVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPS 294 (399)
T ss_pred EEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccc
Confidence 999999999887766100000 0011 11
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCC
Q 043172 444 SPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWP 523 (564)
Q Consensus 444 sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~ 523 (564)
+..=.++|+|+-||+|.|||+... .++.+-.|..+|+.+.|-+ ..+|++++. +|.|++||.++|+....+
T Consensus 295 ss~lpL~A~G~vdG~i~iyD~a~~------~~R~~c~he~~V~~l~w~~-t~~l~t~c~--~g~v~~wDaRtG~l~~~y- 364 (399)
T KOG0296|consen 295 SSKLPLAACGSVDGTIAIYDLAAS------TLRHICEHEDGVTKLKWLN-TDYLLTACA--NGKVRQWDARTGQLKFTY- 364 (399)
T ss_pred ccccchhhcccccceEEEEecccc------hhheeccCCCceEEEEEcC-cchheeecc--CceEEeeeccccceEEEE-
Confidence 122246789999999999999884 4455556888999999999 788999988 999999999999998754
Q ss_pred CCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q 043172 524 PANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLN 559 (564)
Q Consensus 524 ~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~ 559 (564)
.+|...|.+++++|+.+++++++.|++.+||++.
T Consensus 365 --~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 365 --TGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred --ecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 5566889999999999999999999999999875
No 25
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=5e-33 Score=294.24 Aligned_cols=287 Identities=20% Similarity=0.306 Sum_probs=250.0
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEEC-CCCc
Q 043172 261 STGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDL-VKAK 339 (564)
Q Consensus 261 h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl-~~~~ 339 (564)
|...|+|+.|+|+|.+|++++.++.+++|+...........+.+|...|..++|+|++.++++++.|++|+|||+ ..+.
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~ 237 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGR 237 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCe
Confidence 578999999999999999999999999999954332255666889999999999999999999999999999999 4445
Q ss_pred eeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEeCCCeEEE
Q 043172 340 ADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQVYH 418 (564)
Q Consensus 340 ~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~V~l 418 (564)
. +..+.+|.. .|.+++|+|+|+++++|+.|++|+|||+++++++..+. |.+.|++++|++++++|++++.|+.|++
T Consensus 238 ~--~~~l~gH~~-~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~v 314 (456)
T KOG0266|consen 238 N--LKTLKGHST-YVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRV 314 (456)
T ss_pred E--EEEecCCCC-ceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEE
Confidence 5 344778876 79999999999999999999999999999999999999 8999999999999999999999999999
Q ss_pred EECCCCc--eeEEEeecCCc-ceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccc---eeEEEEcC
Q 043172 419 WDLRTRT--CIHRAVDEGCI-NGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTK---VDFMKFNN 492 (564)
Q Consensus 419 wD~~~~~--~~~~~~~~~~~-~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~---I~~l~fsp 492 (564)
||+.++. ++..+...... .+++++|+|++.++++++.|+.+++|++... ..+..+.+|... +.+..+++
T Consensus 315 wd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 389 (456)
T KOG0266|consen 315 WDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG-----KSVGTYTGHSNLVRCIFSPTLST 389 (456)
T ss_pred EECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC-----cceeeecccCCcceeEecccccC
Confidence 9999998 55666655444 6899999999999999999999999999987 777777777664 44556678
Q ss_pred CCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEc--CCCeEEEEEcC
Q 043172 493 DAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGN--AAGKVFLYKLN 559 (564)
Q Consensus 493 dg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs--~dG~V~lw~l~ 559 (564)
.+.++++++. |+.|++|++.++..+..+..+. ...+..+.++|...++++++ .|+.|++|...
T Consensus 390 ~~~~i~sg~~--d~~v~~~~~~s~~~~~~l~~h~--~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 390 GGKLIYSGSE--DGSVYVWDSSSGGILQRLEGHS--KAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CCCeEEEEeC--CceEEEEeCCccchhhhhcCCC--CCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 9999999999 9999999999987776554432 57889999999999999988 78999999864
No 26
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.7e-33 Score=274.73 Aligned_cols=341 Identities=15% Similarity=0.174 Sum_probs=258.5
Q ss_pred hhhhhhhcccccccccchHHHHHHHHHHHHhhCCCCccccccccCCCCCCCCCCCchhhhhhhhcCCCChhhHHhhcccC
Q 043172 152 VNRLRKLRKEEDESLISGAEYVSRLRAQHVKLNPGTEWAQLDSRSRDNDPYDESSDEETQAVVACGYEDTEAVDDILRTD 231 (564)
Q Consensus 152 ~~r~~klr~~~~e~~~~~~ey~~rLr~~~~~~~~~p~wa~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~ll~~~ 231 (564)
++.+|++|.+ ++|..++|++-+. .+|+.+-+ ++.+| ....++.|...
T Consensus 70 ta~ekr~RlA--------~e~L~~i~e~~E~------------------~~d~~~~~--~e~va-----~rLked~le~~ 116 (479)
T KOG0299|consen 70 TAGEKRLRLA--------EEYLDEIREIEED------------------NFDADDLD--DELVA-----SRLKEDVLEQS 116 (479)
T ss_pred chhHHHHHHH--------HHHHHHHHhhhhc------------------ccccchhh--HHHHH-----HHHHHHHHHhc
Confidence 7888999998 9999999843221 01111111 11222 11235667777
Q ss_pred CCeEEcC-CCccCCCeeeeeeeecccCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCc-------------
Q 043172 232 EDLVVKS-SAKLSPGLLEYSRLIDANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNT------------- 297 (564)
Q Consensus 232 ~~~~~~~-~~~l~~~~~d~~rl~~~~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~------------- 297 (564)
|.+...- .+-.++...++. ....|..+|.||+++|++.++++++.+++|.-|++..+...
T Consensus 117 Gr~~r~~a~~v~~~~s~~~~------~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~ 190 (479)
T KOG0299|consen 117 GRVRRLVADKVQAPESSDFR------VIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSH 190 (479)
T ss_pred ceeehhhhhhccccccccce------eeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhc
Confidence 7665322 122223333333 33459999999999999999999999999999998654311
Q ss_pred --eeEEE-EeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCe
Q 043172 298 --KIQSI-FLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGY 374 (564)
Q Consensus 298 --~~~~~-~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~ 374 (564)
++..- ..|...|.+++.|+||+||++|+.+..|.||+..+.+..+ .+.+|.. .|.+++|......+++++.|+.
T Consensus 191 ~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~--~~~ghr~-~V~~L~fr~gt~~lys~s~Drs 267 (479)
T KOG0299|consen 191 GNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVK--VFKGHRG-AVSSLAFRKGTSELYSASADRS 267 (479)
T ss_pred cCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhh--ccccccc-ceeeeeeecCccceeeeecCCc
Confidence 01111 2677889999999999999999999999999999988644 4677776 7999999999999999999999
Q ss_pred EEEEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEE
Q 043172 375 ILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAG 453 (564)
Q Consensus 375 I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasg 453 (564)
|.+|++.....+.++. |++.|.+|....-++.+.+|+.|+++++|++.....+ .+. .+...+-|++|- +..+|++|
T Consensus 268 vkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesql-ifr-g~~~sidcv~~I-n~~HfvsG 344 (479)
T KOG0299|consen 268 VKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQL-IFR-GGEGSIDCVAFI-NDEHFVSG 344 (479)
T ss_pred eEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEecccccee-eee-CCCCCeeeEEEe-cccceeec
Confidence 9999999998888877 9999999999988998888889999999999654433 233 334467788886 55689999
Q ss_pred eCCCcEEEEeCCcccCCcceeeEEccc------------cccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCC----c
Q 043172 454 SDSGIVNVYNRQEFLGGKRKPIKTIEN------------LTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSY----N 517 (564)
Q Consensus 454 s~dg~V~iwd~~~~~~~~~~~~~~~~~------------~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~----~ 517 (564)
|.+|.|.+|++... +|+.+... +..+|++|+..|...++|+||. +|.||||.+..+ +
T Consensus 345 SdnG~IaLWs~~KK-----kplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~--~G~vrLW~i~~g~r~i~ 417 (479)
T KOG0299|consen 345 SDNGSIALWSLLKK-----KPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSW--SGCVRLWKIEDGLRAIN 417 (479)
T ss_pred cCCceEEEeeeccc-----CceeEeeccccccCCccccccccceeeeEecccCceEEecCC--CCceEEEEecCCccccc
Confidence 99999999999886 77766531 2238999999999999999999 999999999876 2
Q ss_pred eeccCCCCCCCCCCcEEEEEeCCCCEEEEEc
Q 043172 518 VFSNWPPANRNLQYPRCLDFSPGGGFMAVGN 548 (564)
Q Consensus 518 ~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs 548 (564)
++..++ -.+.|++|+|+++|.+|++|-
T Consensus 418 ~l~~ls----~~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 418 LLYSLS----LVGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred eeeecc----cccEEEEEEEccCCCEEEEec
Confidence 333333 348899999999999777663
No 27
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=8.5e-33 Score=254.24 Aligned_cols=244 Identities=16% Similarity=0.223 Sum_probs=208.8
Q ss_pred CCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECC
Q 043172 257 ADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLV 336 (564)
Q Consensus 257 ~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~ 336 (564)
...||+..|+.+..+++|+++++++.|+++++||+.++ ...+.+.+|...|.+++|+|+.+.|++|++|++|.+|+..
T Consensus 58 ~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g--~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~ 135 (315)
T KOG0279|consen 58 RLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATG--ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL 135 (315)
T ss_pred eeeccceEecceEEccCCceEEeccccceEEEEEecCC--cEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeec
Confidence 45679999999999999999999999999999999854 5788899999999999999999999999999999999998
Q ss_pred CCceeeeccccccCCcceEEEEEcCC--CCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEeCC
Q 043172 337 KAKADKIGPLVGREEKSLEFFEVSPD--SSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGGD 413 (564)
Q Consensus 337 ~~~~~~~~~~~~~~~~~v~~~~~spd--g~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~d 413 (564)
+.....+..- .+...|.|+.|+|+ ..+|++++.|++|++||+++.+....+. |++.++.++++|||..+++|+.|
T Consensus 136 g~ck~t~~~~--~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkd 213 (315)
T KOG0279|consen 136 GVCKYTIHED--SHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKD 213 (315)
T ss_pred ccEEEEEecC--CCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCC
Confidence 7654433221 11458999999998 6899999999999999999999888877 89999999999999999999999
Q ss_pred CeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEcc---------ccccc
Q 043172 414 GQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIE---------NLTTK 484 (564)
Q Consensus 414 g~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~---------~~~~~ 484 (564)
|.+.+||++.++++..+. +...|.+++|+|+..+|+.+... .|+|||+... ..+..+. .....
T Consensus 214 g~~~LwdL~~~k~lysl~--a~~~v~sl~fspnrywL~~at~~-sIkIwdl~~~-----~~v~~l~~d~~g~s~~~~~~~ 285 (315)
T KOG0279|consen 214 GEAMLWDLNEGKNLYSLE--AFDIVNSLCFSPNRYWLCAATAT-SIKIWDLESK-----AVVEELKLDGIGPSSKAGDPI 285 (315)
T ss_pred ceEEEEEccCCceeEecc--CCCeEeeEEecCCceeEeeccCC-ceEEEeccch-----hhhhhccccccccccccCCcE
Confidence 999999999999976654 44578999999998777776655 5999999886 4444332 11234
Q ss_pred eeEEEEcCCCcEEEEEecCCCCeEEEEEcC
Q 043172 485 VDFMKFNNDAQILAICSTMKKNSLKLIHIP 514 (564)
Q Consensus 485 I~~l~fspdg~~La~~s~~~d~~I~lwdl~ 514 (564)
..+++|++||+.|++|-. ++.|++|.+.
T Consensus 286 clslaws~dG~tLf~g~t--d~~irv~qv~ 313 (315)
T KOG0279|consen 286 CLSLAWSADGQTLFAGYT--DNVIRVWQVA 313 (315)
T ss_pred EEEEEEcCCCcEEEeeec--CCcEEEEEee
Confidence 567899999999999998 9999999875
No 28
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1e-32 Score=255.08 Aligned_cols=264 Identities=14% Similarity=0.191 Sum_probs=230.4
Q ss_pred CCCccCCCeeeee-eeecccCCC------CCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCC----CceeEEEEeCC
Q 043172 238 SSAKLSPGLLEYS-RLIDANADE------SSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKR----NTKIQSIFLED 306 (564)
Q Consensus 238 ~~~~l~~~~~d~~-rl~~~~~~~------~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~----~~~~~~~~~~~ 306 (564)
.++++.+...|-+ -+|+..+.. -....|..++|+|.|+++|+||.|+...||++.... .+....+.+|.
T Consensus 66 Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHt 145 (343)
T KOG0286|consen 66 DSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHT 145 (343)
T ss_pred CcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCcc
Confidence 4455555555544 456654432 246789999999999999999999999999997432 24556688999
Q ss_pred cCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcE
Q 043172 307 CPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSP-DSSVIAFVGNEGYILLVSSKTKEL 385 (564)
Q Consensus 307 ~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~la~~~~dg~I~lwd~~t~~~ 385 (564)
+.+.|+.|.+| ..|++++.|.++.+||+++++. +..+.||.. .|.++.++| +++.+++|+-|+..+|||++.+.+
T Consensus 146 gylScC~f~dD-~~ilT~SGD~TCalWDie~g~~--~~~f~GH~g-DV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c 221 (343)
T KOG0286|consen 146 GYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQ--TQVFHGHTG-DVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQC 221 (343)
T ss_pred ceeEEEEEcCC-CceEecCCCceEEEEEcccceE--EEEecCCcc-cEEEEecCCCCCCeEEecccccceeeeeccCcce
Confidence 99999999874 5888999999999999999986 445778776 799999999 999999999999999999999999
Q ss_pred EEEee-ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeec-CCcceEEEEECCCCCEEEEEeCCCcEEEEe
Q 043172 386 IGTLK-MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDE-GCINGTALCTSPDGTFFAAGSDSGIVNVYN 463 (564)
Q Consensus 386 ~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~-~~~~i~~l~~sp~g~~lasgs~dg~V~iwd 463 (564)
+++|. |...|++++|.|+|.-|++|+.|+++++||++..+.+..+... ...+|++++||..|++|++|..|..++|||
T Consensus 222 ~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWD 301 (343)
T KOG0286|consen 222 VQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWD 301 (343)
T ss_pred eEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEee
Confidence 99999 9999999999999999999999999999999999888887754 345789999999999999999999999999
Q ss_pred CCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEE
Q 043172 464 RQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIH 512 (564)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwd 512 (564)
.-.+ ..+..+.+|...|++|..+|||.-|++||. |.++|||.
T Consensus 302 tlk~-----e~vg~L~GHeNRvScl~~s~DG~av~TgSW--Ds~lriW~ 343 (343)
T KOG0286|consen 302 TLKG-----ERVGVLAGHENRVSCLGVSPDGMAVATGSW--DSTLRIWA 343 (343)
T ss_pred cccc-----ceEEEeeccCCeeEEEEECCCCcEEEecch--hHheeecC
Confidence 9887 888899999999999999999999999999 99999994
No 29
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.4e-33 Score=291.94 Aligned_cols=250 Identities=17% Similarity=0.178 Sum_probs=222.8
Q ss_pred eEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceee-----------------------------ecccccc
Q 043172 299 IQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADK-----------------------------IGPLVGR 349 (564)
Q Consensus 299 ~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~-----------------------------~~~~~~~ 349 (564)
..+++.....++|+.|++++..||.|..|..|++|.+...+..+ ...+.||
T Consensus 371 ~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH 450 (707)
T KOG0263|consen 371 MYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGH 450 (707)
T ss_pred EEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecC
Confidence 44455556679999999999999999999999999987422110 1225676
Q ss_pred CCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeE
Q 043172 350 EEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIH 428 (564)
Q Consensus 350 ~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~ 428 (564)
.+ +|..+.|+|+.++|++++.|++|++|.+.+..++..++ |..+|.++.|+|.|-++++++.|++-++|......+++
T Consensus 451 ~G-PVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlR 529 (707)
T KOG0263|consen 451 SG-PVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLR 529 (707)
T ss_pred CC-ceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchh
Confidence 65 89999999999999999999999999999999998888 99999999999999999999999999999999888888
Q ss_pred EEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeE
Q 043172 429 RAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSL 508 (564)
Q Consensus 429 ~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I 508 (564)
.+..+-. .+.|+.|+|+..|+++||.|.+|++||+.++ ..++.|.+|.++|++|+|||+|++|++|+. ++.|
T Consensus 530 ifaghls-DV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G-----~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~e--d~~I 601 (707)
T KOG0263|consen 530 IFAGHLS-DVDCVSFHPNSNYVATGSSDRTVRLWDVSTG-----NSVRIFTGHKGPVTALAFSPCGRYLASGDE--DGLI 601 (707)
T ss_pred hhccccc-ccceEEECCcccccccCCCCceEEEEEcCCC-----cEEEEecCCCCceEEEEEcCCCceEeeccc--CCcE
Confidence 7776554 6899999999999999999999999999998 889999999999999999999999999999 9999
Q ss_pred EEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCC
Q 043172 509 KLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNH 560 (564)
Q Consensus 509 ~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~ 560 (564)
.|||+.++..+..+. +|.+.|.++.||.+|..||+|+.|..|++||+..
T Consensus 602 ~iWDl~~~~~v~~l~---~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 602 KIWDLANGSLVKQLK---GHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred EEEEcCCCcchhhhh---cccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 999999999887554 4468899999999999999999999999999864
No 30
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.7e-31 Score=264.08 Aligned_cols=307 Identities=18% Similarity=0.280 Sum_probs=242.1
Q ss_pred eecccCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeC----C
Q 043172 252 LIDANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGR----R 327 (564)
Q Consensus 252 l~~~~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~----d 327 (564)
+..+.....|..+++-..|+|.|.|+|+|...|+|+||+.......+-..++.-.++|..++|++++++|++.|. -
T Consensus 49 ~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerf 128 (603)
T KOG0318|consen 49 PASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERF 128 (603)
T ss_pred ccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccce
Confidence 333444566888999999999999999999999999999876544455566677889999999999999998863 2
Q ss_pred CeEEEEECCCC------ceeee--------------------------------ccccccCCcceEEEEEcCCCCEEEEE
Q 043172 328 KFFYSLDLVKA------KADKI--------------------------------GPLVGREEKSLEFFEVSPDSSVIAFV 369 (564)
Q Consensus 328 g~i~iwdl~~~------~~~~~--------------------------------~~~~~~~~~~v~~~~~spdg~~la~~ 369 (564)
|.+.+||..+. ....+ ......+.+-|.|+.|+|||.+++++
T Consensus 129 g~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~ 208 (603)
T KOG0318|consen 129 GHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATA 208 (603)
T ss_pred eEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEe
Confidence 56777875431 10000 00112233579999999999999999
Q ss_pred eCCCeEEEEECCCCcEEEEee----ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEe--------------
Q 043172 370 GNEGYILLVSSKTKELIGTLK----MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAV-------------- 431 (564)
Q Consensus 370 ~~dg~I~lwd~~t~~~~~~~~----~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~-------------- 431 (564)
+.||.|.+||-.+++.+..+. |.+.|.+++|+||+..|++++.|.+++|||+.+++++.++.
T Consensus 209 gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lW 288 (603)
T KOG0318|consen 209 GSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLW 288 (603)
T ss_pred cCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEE
Confidence 999999999999999999987 89999999999999999999999999999999887776554
Q ss_pred ----------------------------ecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCC-------------
Q 043172 432 ----------------------------DEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGG------------- 470 (564)
Q Consensus 432 ----------------------------~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~------------- 470 (564)
..|...|++++.+|++.+|++|+.||.|.-|+...+...
T Consensus 289 qkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~ 368 (603)
T KOG0318|consen 289 QKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKG 368 (603)
T ss_pred eCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEE
Confidence 134457899999999999999999999999998765210
Q ss_pred --------------------------------------cceeeEEcc-------------------------ccccceeE
Q 043172 471 --------------------------------------KRKPIKTIE-------------------------NLTTKVDF 487 (564)
Q Consensus 471 --------------------------------------~~~~~~~~~-------------------------~~~~~I~~ 487 (564)
+|+.+.... ...-...+
T Consensus 369 ~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~ 448 (603)
T KOG0318|consen 369 MAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSA 448 (603)
T ss_pred EeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccce
Confidence 111111110 01123467
Q ss_pred EEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCCC
Q 043172 488 MKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNHY 561 (564)
Q Consensus 488 l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~~ 561 (564)
++++|++..+++|+. |+.|+||.+....... ......|.+.|++++||||+.|||+|...++|.+|++.++
T Consensus 449 vAv~~~~~~vaVGG~--Dgkvhvysl~g~~l~e-e~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~ 519 (603)
T KOG0318|consen 449 VAVSPDGSEVAVGGQ--DGKVHVYSLSGDELKE-EAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASR 519 (603)
T ss_pred EEEcCCCCEEEEecc--cceEEEEEecCCcccc-eeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccC
Confidence 899999999999999 9999999998765432 2233457799999999999999999999999999999765
No 31
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5e-33 Score=267.41 Aligned_cols=290 Identities=15% Similarity=0.157 Sum_probs=241.9
Q ss_pred CCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCC-CCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEEC
Q 043172 257 ADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGK-RNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDL 335 (564)
Q Consensus 257 ~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~-~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl 335 (564)
..+.|+..|+-+.||++|++||+|+.|.+..+|.+... ......++.+|..+|..+.||||.++|++|+.+..+.+||+
T Consensus 219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv 298 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDV 298 (519)
T ss_pred hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccC
Confidence 35669999999999999999999999999999998643 23457788899999999999999999999999999999999
Q ss_pred CCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee--ecCcEEEEEEecCCCEEEEEeCC
Q 043172 336 VKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK--MNGTVRSLAFADDGKQLLSSGGD 413 (564)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~--~~~~V~~l~~spdg~~l~s~s~d 413 (564)
.+|...... ......++.+++|.|||..+++|+.|+.|..||+.... ..... ....|.+++.++||+++++.+.|
T Consensus 299 ~tgd~~~~y--~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~vl~v~~d 375 (519)
T KOG0293|consen 299 DTGDLRHLY--PSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKYVLLVTVD 375 (519)
T ss_pred Ccchhhhhc--ccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCCcEEEEEecc
Confidence 999875432 22224579999999999999999999999999986543 22222 23569999999999999999999
Q ss_pred CeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccc--eeEEEEc
Q 043172 414 GQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTK--VDFMKFN 491 (564)
Q Consensus 414 g~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~--I~~l~fs 491 (564)
..|++++..+......+..++ +|+++++|.+++++++.-.+..|.+||+... +.+..+.+|... |..-+|-
T Consensus 376 ~~i~l~~~e~~~dr~lise~~--~its~~iS~d~k~~LvnL~~qei~LWDl~e~-----~lv~kY~Ghkq~~fiIrSCFg 448 (519)
T KOG0293|consen 376 KKIRLYNREARVDRGLISEEQ--PITSFSISKDGKLALVNLQDQEIHLWDLEEN-----KLVRKYFGHKQGHFIIRSCFG 448 (519)
T ss_pred cceeeechhhhhhhccccccC--ceeEEEEcCCCcEEEEEcccCeeEEeecchh-----hHHHHhhcccccceEEEeccC
Confidence 999999998877665554444 6799999999999999999999999999976 788888887653 3333454
Q ss_pred C-CCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCC-CCEEEEEcCCCeEEEEEcCCC
Q 043172 492 N-DAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPG-GGFMAVGNAAGKVFLYKLNHY 561 (564)
Q Consensus 492 p-dg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspd-g~~Lasgs~dG~V~lw~l~~~ 561 (564)
- +..++++||. |+.|+|||..++.++..+ .+|...|++++|+|. -.+||+|++||+|+||.....
T Consensus 449 g~~~~fiaSGSE--D~kvyIWhr~sgkll~~L---sGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 449 GGNDKFIASGSE--DSKVYIWHRISGKLLAVL---SGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred CCCcceEEecCC--CceEEEEEccCCceeEee---cCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 3 4578999998 999999999999998855 455688999999995 568899999999999998754
No 32
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2e-32 Score=280.44 Aligned_cols=320 Identities=16% Similarity=0.241 Sum_probs=243.6
Q ss_pred cccCCCeEEcCCCccCCCeeeeeeeecccCCCC-CCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCC
Q 043172 228 LRTDEDLVVKSSAKLSPGLLEYSRLIDANADES-STGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLED 306 (564)
Q Consensus 228 l~~~~~~~~~~~~~l~~~~~d~~rl~~~~~~~~-h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~ 306 (564)
+......+....+.....+|.+.+.+-+..-.. |++||.-++|+|.+.+|++||.|+.++|||+.. ..++..+.+|+
T Consensus 70 l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~--~~~th~fkG~g 147 (775)
T KOG0319|consen 70 LTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKN--GYCTHSFKGHG 147 (775)
T ss_pred ecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeC--CEEEEEecCCC
Confidence 344455555444555566777665544444444 999999999999999999999999999999984 45889999999
Q ss_pred cCeEEEEEeeCCC--EEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 043172 307 CPVRKASFLPDGS--QAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKE 384 (564)
Q Consensus 307 ~~I~~l~fspdg~--~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~ 384 (564)
+.|.++.|+|+-+ .|++|..|+.+++||+.+... .+..+..|.. .|++++|++++..++++|.|..|.|||+.+.+
T Consensus 148 GvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t-cl~~~~~H~S-~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~ 225 (775)
T KOG0319|consen 148 GVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT-CLHTMILHKS-AVTSLAFSEDSLELLSVGRDKVIIVWDLVQYK 225 (775)
T ss_pred ceEEEEEeCCccchhheeecCCCceEEEEEcccCch-HHHHHHhhhh-heeeeeeccCCceEEEeccCcEEEEeehhhhh
Confidence 9999999999654 478888999999999997665 3455666665 79999999999999999999999999996554
Q ss_pred EEEEeeecCcEEEEEEecC-------------------------------------------------------------
Q 043172 385 LIGTLKMNGTVRSLAFADD------------------------------------------------------------- 403 (564)
Q Consensus 385 ~~~~~~~~~~V~~l~~spd------------------------------------------------------------- 403 (564)
...++.....+-++.+.++
T Consensus 226 ~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl 305 (775)
T KOG0319|consen 226 KLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNL 305 (775)
T ss_pred hhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceE
Confidence 4333332222222222222
Q ss_pred -----------------------------------------------------------------------CCEEEEEeC
Q 043172 404 -----------------------------------------------------------------------GKQLLSSGG 412 (564)
Q Consensus 404 -----------------------------------------------------------------------g~~l~s~s~ 412 (564)
|-+|++|+.
T Consensus 306 ~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sK 385 (775)
T KOG0319|consen 306 FLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSK 385 (775)
T ss_pred EEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecC
Confidence 234445555
Q ss_pred CCeEEEEECCCCce------------------------------------eEEEe-------------------ecCCcc
Q 043172 413 DGQVYHWDLRTRTC------------------------------------IHRAV-------------------DEGCIN 437 (564)
Q Consensus 413 dg~V~lwD~~~~~~------------------------------------~~~~~-------------------~~~~~~ 437 (564)
|.++++|.+..+.. ++.|. ..|...
T Consensus 386 D~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKd 465 (775)
T KOG0319|consen 386 DKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKD 465 (775)
T ss_pred CceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhccc
Confidence 55555554421100 00000 112234
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCc
Q 043172 438 GTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYN 517 (564)
Q Consensus 438 i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~ 517 (564)
|.+++++|+..+|||||.|.+.+||++... ..+.++.+|+..|+++.|+|..+.||++|+ |.+|+||.+.++.
T Consensus 466 IN~Vaia~ndkLiAT~SqDktaKiW~le~~-----~l~~vLsGH~RGvw~V~Fs~~dq~laT~Sg--D~TvKIW~is~fS 538 (775)
T KOG0319|consen 466 INCVAIAPNDKLIATGSQDKTAKIWDLEQL-----RLLGVLSGHTRGVWCVSFSKNDQLLATCSG--DKTVKIWSISTFS 538 (775)
T ss_pred ccceEecCCCceEEecccccceeeecccCc-----eEEEEeeCCccceEEEEeccccceeEeccC--CceEEEEEeccce
Confidence 667888888888888888888888888866 888999999999999999999999999999 9999999999999
Q ss_pred eeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCCC
Q 043172 518 VFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNHY 561 (564)
Q Consensus 518 ~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~~ 561 (564)
++.++ .+|...|.-+.|-.+|..|++++.||-|+||++++.
T Consensus 539 ClkT~---eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~ 579 (775)
T KOG0319|consen 539 CLKTF---EGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTN 579 (775)
T ss_pred eeeee---cCccceeEeeeeeeCCcEEEeccCCCcEEEEeccch
Confidence 88755 556688999999999999999999999999999763
No 33
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=2.3e-31 Score=242.57 Aligned_cols=286 Identities=17% Similarity=0.224 Sum_probs=249.8
Q ss_pred CCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEee-CCCEEEEEeCCCeEEEEECC
Q 043172 258 DESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLP-DGSQAIIAGRRKFFYSLDLV 336 (564)
Q Consensus 258 ~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fsp-dg~~l~s~~~dg~i~iwdl~ 336 (564)
.++|.+.|.+|+|+.+|..|++|+.|+++.+|+++......-....+|...|-.++|+| ....+++++.++.|++||+.
T Consensus 16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r 95 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIR 95 (313)
T ss_pred hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEec
Confidence 45799999999999999999999999999999998765444445677888999999997 56788999999999999999
Q ss_pred CCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEEeCCCeE
Q 043172 337 KAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSGGDGQV 416 (564)
Q Consensus 337 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s~dg~V 416 (564)
.+++.......+. -..+.|+|+|.++++++.+..|..+|.++.+.+........+.-++|+-++.+++..+..|.|
T Consensus 96 ~~k~~~~i~~~~e----ni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v 171 (313)
T KOG1407|consen 96 SGKCTARIETKGE----NINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCV 171 (313)
T ss_pred cCcEEEEeeccCc----ceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceE
Confidence 9987554333332 235899999999999999999999999999999888888889999999888888877788999
Q ss_pred EEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcE
Q 043172 417 YHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQI 496 (564)
Q Consensus 417 ~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~ 496 (564)
.|.....-+++..+..|. ..+.||.|+|+|+|||+|+.|-.+.+||+... .+++.+..+.-+|..|.||.||++
T Consensus 172 ~ILsypsLkpv~si~AH~-snCicI~f~p~GryfA~GsADAlvSLWD~~EL-----iC~R~isRldwpVRTlSFS~dg~~ 245 (313)
T KOG1407|consen 172 EILSYPSLKPVQSIKAHP-SNCICIEFDPDGRYFATGSADALVSLWDVDEL-----ICERCISRLDWPVRTLSFSHDGRM 245 (313)
T ss_pred EEEeccccccccccccCC-cceEEEEECCCCceEeeccccceeeccChhHh-----hhheeeccccCceEEEEeccCcce
Confidence 999999999998888665 57889999999999999999999999999987 899999999999999999999999
Q ss_pred EEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCC---------CeEEEEEcC
Q 043172 497 LAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAA---------GKVFLYKLN 559 (564)
Q Consensus 497 La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~d---------G~V~lw~l~ 559 (564)
||+||. |..|-|-.+++|..+..++.. ++...++|+|...+||.+++| |.|++|-+.
T Consensus 246 lASaSE--Dh~IDIA~vetGd~~~eI~~~----~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 246 LASASE--DHFIDIAEVETGDRVWEIPCE----GPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred eeccCc--cceEEeEecccCCeEEEeecc----CCceeEEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence 999999 999999999999888766554 778899999999999877654 678888664
No 34
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-31 Score=267.95 Aligned_cols=281 Identities=19% Similarity=0.282 Sum_probs=250.5
Q ss_pred CCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCC
Q 043172 259 ESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKA 338 (564)
Q Consensus 259 ~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~ 338 (564)
..|+..|.||.|||..++++++-.+|.|.||+.+ +...+.++.....||+++.|-+-.+++++|+.|..|+||+.+++
T Consensus 10 ~~rSdRVKsVd~HPtePw~la~LynG~V~IWnye--tqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ 87 (794)
T KOG0276|consen 10 QSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYE--TQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG 87 (794)
T ss_pred hccCCceeeeecCCCCceEEEeeecCeeEEEecc--cceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccc
Confidence 3488899999999999999999999999999998 44588899999999999999999999999999999999999998
Q ss_pred ceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCC-cEEEEee-ecCcEEEEEEec-CCCEEEEEeCCCe
Q 043172 339 KADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTK-ELIGTLK-MNGTVRSLAFAD-DGKQLLSSGGDGQ 415 (564)
Q Consensus 339 ~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~-~~~~~~~-~~~~V~~l~~sp-dg~~l~s~s~dg~ 415 (564)
.. +..+..|.. .|++++++|.-.++++++.|-.|++||...+ .+.+++. |..-|.+++|+| |.+.+++++-|++
T Consensus 88 ek--V~~FeAH~D-yIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrT 164 (794)
T KOG0276|consen 88 EK--VKTFEAHSD-YIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRT 164 (794)
T ss_pred ee--eEEeecccc-ceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeecccc
Confidence 85 555777776 7999999999999999999999999999765 4455666 888999999999 6789999999999
Q ss_pred EEEEECCCCceeEEEeecCCcceEEEEECCCC--CEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCC
Q 043172 416 VYHWDLRTRTCIHRAVDEGCINGTALCTSPDG--TFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNND 493 (564)
Q Consensus 416 V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g--~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspd 493 (564)
|++|.+.+..+..++..|. .+|.|+++-+.| .||++|+.|.+|+|||.++. .++.++.+|...|+.+.|+|.
T Consensus 165 VKVWslgs~~~nfTl~gHe-kGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk-----~CV~TLeGHt~Nvs~v~fhp~ 238 (794)
T KOG0276|consen 165 VKVWSLGSPHPNFTLEGHE-KGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK-----SCVQTLEGHTNNVSFVFFHPE 238 (794)
T ss_pred EEEEEcCCCCCceeeeccc-cCcceEEeccCCCcceEEecCCCceEEEeecchH-----HHHHHhhcccccceEEEecCC
Confidence 9999999999988888554 478999998765 59999999999999999997 999999999999999999999
Q ss_pred CcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEE
Q 043172 494 AQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFL 555 (564)
Q Consensus 494 g~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~l 555 (564)
-.++++||. ||++|||+..+.+....+ +-...+|+|++-.+.++.+++|.+.|.|.+
T Consensus 239 lpiiisgsE--DGTvriWhs~Ty~lE~tL---n~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 239 LPIIISGSE--DGTVRIWNSKTYKLEKTL---NYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred CcEEEEecC--CccEEEecCcceehhhhh---hcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 999999999 999999999988776543 334588999999999999999988887654
No 35
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-30 Score=238.86 Aligned_cols=288 Identities=13% Similarity=0.152 Sum_probs=239.8
Q ss_pred CCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCC
Q 043172 258 DESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVK 337 (564)
Q Consensus 258 ~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~ 337 (564)
.++|+.|++-|.|+.+|.+|++++.|.++.||-.. .+..+-++.+|.+.|.|+....+.+++++|+.|.++++||+.+
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~--nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t 83 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSL--NGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET 83 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEec--CCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCC
Confidence 56899999999999999999999999999999664 4568899999999999999999999999999999999999999
Q ss_pred CceeeeccccccCCcceEEEEEcCCCCEEEEEeC-----CCeEEEEECC-------CCcEEEEee-ecCcEEEEEEecCC
Q 043172 338 AKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGN-----EGYILLVSSK-------TKELIGTLK-MNGTVRSLAFADDG 404 (564)
Q Consensus 338 ~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~-----dg~I~lwd~~-------t~~~~~~~~-~~~~V~~l~~spdg 404 (564)
|+........ .+|..+.|+++|++++.+.. .+.|.+++++ ..+++..+. +...++.+-|.|-+
T Consensus 84 Gk~la~~k~~----~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~ 159 (327)
T KOG0643|consen 84 GKQLATWKTN----SPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLG 159 (327)
T ss_pred CcEEEEeecC----CeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccC
Confidence 9986543322 37999999999999888754 4789999998 445555555 77899999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccc
Q 043172 405 KQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTK 484 (564)
Q Consensus 405 ~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~ 484 (564)
.+|++|..+|.|.+||++++..+......|...|+.++++|+..++++||.|.+-++||+.+. ..++++. ...|
T Consensus 160 ~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl-----~v~Kty~-te~P 233 (327)
T KOG0643|consen 160 ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL-----EVLKTYT-TERP 233 (327)
T ss_pred CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccce-----eeEEEee-eccc
Confidence 999999999999999999987766655556668999999999999999999999999999997 7888876 4689
Q ss_pred eeEEEEcCCCcEEEEEecCCCCeEEEEE--cCCCcee---------ccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeE
Q 043172 485 VDFMKFNNDAQILAICSTMKKNSLKLIH--IPSYNVF---------SNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKV 553 (564)
Q Consensus 485 I~~l~fspdg~~La~~s~~~d~~I~lwd--l~s~~~~---------~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V 553 (564)
|++.+++|...+++.|++ ....-+=- .+.++.- ..+-...+|.++|++++|+|+|+..++|+.||.|
T Consensus 234 vN~aaisP~~d~VilgGG--qeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~V 311 (327)
T KOG0643|consen 234 VNTAAISPLLDHVILGGG--QEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYV 311 (327)
T ss_pred ccceecccccceEEecCC--ceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceE
Confidence 999999998888888776 22222211 1122111 1223456889999999999999999999999999
Q ss_pred EEEEcC
Q 043172 554 FLYKLN 559 (564)
Q Consensus 554 ~lw~l~ 559 (564)
+|..+.
T Consensus 312 R~h~Fd 317 (327)
T KOG0643|consen 312 RLHHFD 317 (327)
T ss_pred EEEEec
Confidence 987653
No 36
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-31 Score=254.68 Aligned_cols=273 Identities=20% Similarity=0.282 Sum_probs=243.6
Q ss_pred ccCCCeEEcCCCccCCCeeeeeeeecccCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcC
Q 043172 229 RTDEDLVVKSSAKLSPGLLEYSRLIDANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCP 308 (564)
Q Consensus 229 ~~~~~~~~~~~~~l~~~~~d~~rl~~~~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~ 308 (564)
...-.+++..+.......||...-.-....++|...|..|+|+..|++|++++.|=.+++|+.+.. ..++.++.+|...
T Consensus 117 hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~-~~c~ks~~gh~h~ 195 (406)
T KOG0295|consen 117 HPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF-FRCIKSLIGHEHG 195 (406)
T ss_pred ccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHH-HHHHHHhcCcccc
Confidence 333344445556666777777655556678899999999999999999999999999999999853 6678889999999
Q ss_pred eEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE
Q 043172 309 VRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGT 388 (564)
Q Consensus 309 I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~ 388 (564)
|.+++|-|.|.+|+++++|.+|+.|++.++-+.+ .+.+|.. .|..+..+.||.++|+++.+.+|++|-+.++++...
T Consensus 196 vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~--t~~~h~e-wvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~ 272 (406)
T KOG0295|consen 196 VSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVK--TFPGHSE-WVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAE 272 (406)
T ss_pred eeeEEEEecCCeeeecccccceeEEecccceeEE--eccCchH-hEEEEEecCCeeEEEecCCCceEEEEEeccchhhhh
Confidence 9999999999999999999999999999998854 5778877 799999999999999999999999999999998888
Q ss_pred ee-ecCcEEEEEEecC----------C-----CEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEE
Q 043172 389 LK-MNGTVRSLAFADD----------G-----KQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAA 452 (564)
Q Consensus 389 ~~-~~~~V~~l~~spd----------g-----~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~las 452 (564)
++ |+.+|.+++|.|. + .++++++.|++|++||+.++.|+.++..+.. .|..++|+|.|+||++
T Consensus 273 lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdn-wVr~~af~p~Gkyi~S 351 (406)
T KOG0295|consen 273 LREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDN-WVRGVAFSPGGKYILS 351 (406)
T ss_pred hhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccc-eeeeeEEcCCCeEEEE
Confidence 88 8999999999763 2 5899999999999999999999999987665 7999999999999999
Q ss_pred EeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEc
Q 043172 453 GSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHI 513 (564)
Q Consensus 453 gs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl 513 (564)
+.+|++++|||+++. ++.+++..|..-++++.|+.+..++++|+- +..+++|..
T Consensus 352 caDDktlrvwdl~~~-----~cmk~~~ah~hfvt~lDfh~~~p~VvTGsV--dqt~KvwEc 405 (406)
T KOG0295|consen 352 CADDKTLRVWDLKNL-----QCMKTLEAHEHFVTSLDFHKTAPYVVTGSV--DQTVKVWEC 405 (406)
T ss_pred EecCCcEEEEEeccc-----eeeeccCCCcceeEEEecCCCCceEEeccc--cceeeeeec
Confidence 999999999999998 999999999999999999999999999999 899999964
No 37
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=1.2e-30 Score=271.14 Aligned_cols=286 Identities=16% Similarity=0.219 Sum_probs=248.8
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCc
Q 043172 260 SSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAK 339 (564)
Q Consensus 260 ~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~ 339 (564)
.-++.|..++|||..++++++-..|.|++||.... .++..+..|.+||+.++|+|++..+++||.|..|+||+..+.+
T Consensus 7 skSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~--tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr 84 (1202)
T KOG0292|consen 7 SKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMG--TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR 84 (1202)
T ss_pred cccccccceecCCCCCEEEEeecCceeeeehhhhh--hHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccce
Confidence 34578999999999999999999999999999854 4788899999999999999999999999999999999999988
Q ss_pred eeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEeCCCeEEE
Q 043172 340 ADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQVYH 418 (564)
Q Consensus 340 ~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~V~l 418 (564)
+ +.++.||.. .|..+.|++.-.+|++++.|.+|+||+..++.++..+. |+..|.|..|+|....++++|-|.+|++
T Consensus 85 c--lftL~GHlD-YVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRV 161 (1202)
T KOG0292|consen 85 C--LFTLLGHLD-YVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRV 161 (1202)
T ss_pred e--hhhhccccc-eeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEE
Confidence 7 667889887 79999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred EECCCCc----------------------------eeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCC
Q 043172 419 WDLRTRT----------------------------CIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGG 470 (564)
Q Consensus 419 wD~~~~~----------------------------~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~ 470 (564)
||+..-+ .+..+...|.-+|.-++|+|.-.+|++|+.|..|++|.+...
T Consensus 162 WDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnet--- 238 (1202)
T KOG0292|consen 162 WDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET--- 238 (1202)
T ss_pred EeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccc---
Confidence 9985311 112222345557888999999999999999999999999863
Q ss_pred cceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCC
Q 043172 471 KRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAA 550 (564)
Q Consensus 471 ~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~d 550 (564)
..-.+-+..+|...|+++-|+|...++++.|. |++||+||+...+.++++...+ .+.+.++-+|..+++|+|.+.
T Consensus 239 KaWEvDtcrgH~nnVssvlfhp~q~lIlSnsE--DksirVwDm~kRt~v~tfrren---dRFW~laahP~lNLfAAgHDs 313 (1202)
T KOG0292|consen 239 KAWEVDTCRGHYNNVSSVLFHPHQDLILSNSE--DKSIRVWDMTKRTSVQTFRREN---DRFWILAAHPELNLFAAGHDS 313 (1202)
T ss_pred cceeehhhhcccCCcceEEecCccceeEecCC--CccEEEEecccccceeeeeccC---CeEEEEEecCCcceeeeecCC
Confidence 22345677899999999999999999999998 9999999999988887664433 778999999999999888665
Q ss_pred CeEEEEEcC
Q 043172 551 GKVFLYKLN 559 (564)
Q Consensus 551 G~V~lw~l~ 559 (564)
| +.+|.+.
T Consensus 314 G-m~VFkle 321 (1202)
T KOG0292|consen 314 G-MIVFKLE 321 (1202)
T ss_pred c-eEEEEEc
Confidence 5 5566654
No 38
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.98 E-value=6e-31 Score=244.78 Aligned_cols=292 Identities=13% Similarity=0.192 Sum_probs=249.1
Q ss_pred CCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecC----------------CCCceeEEEEeCCcCeEEEEEeeCCCEEE
Q 043172 259 ESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDG----------------KRNTKIQSIFLEDCPVRKASFLPDGSQAI 322 (564)
Q Consensus 259 ~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~----------------~~~~~~~~~~~~~~~I~~l~fspdg~~l~ 322 (564)
..|.+++.+.+|+|||.+++|||.|..|+|+|+.. ...+.+.++..|..+|+++.|+|....|+
T Consensus 109 t~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILi 188 (430)
T KOG0640|consen 109 TSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILI 188 (430)
T ss_pred eecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEE
Confidence 35999999999999999999999999999999861 12367888899999999999999999999
Q ss_pred EEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee----ecCcEEEE
Q 043172 323 IAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK----MNGTVRSL 398 (564)
Q Consensus 323 s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~----~~~~V~~l 398 (564)
++++|++|+++|+......+........ .+|.++.|+|.|.+|++|.....+++||+.+.++..... |.+.|+++
T Consensus 189 S~srD~tvKlFDfsK~saKrA~K~~qd~-~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V 267 (430)
T KOG0640|consen 189 SGSRDNTVKLFDFSKTSAKRAFKVFQDT-EPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQV 267 (430)
T ss_pred eccCCCeEEEEecccHHHHHHHHHhhcc-ceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEE
Confidence 9999999999999876554433333222 379999999999999999999999999999998876554 78899999
Q ss_pred EEecCCCEEEEEeCCCeEEEEECCCCceeEEEee-cCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEE
Q 043172 399 AFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVD-EGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKT 477 (564)
Q Consensus 399 ~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~-~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~ 477 (564)
.+++.|++.++++.||.|++||--+++|+.++.. +++..|++..|..+|+|+++.+.|..|++|.+.++ +++..
T Consensus 268 ~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~-----R~l~~ 342 (430)
T KOG0640|consen 268 RYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG-----RMLKE 342 (430)
T ss_pred EecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC-----ceEEE
Confidence 9999999999999999999999999999988875 45667899999999999999999999999999998 78877
Q ss_pred ccccc-----cceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCe
Q 043172 478 IENLT-----TKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGK 552 (564)
Q Consensus 478 ~~~~~-----~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~ 552 (564)
..+.. .--+...|+....|++.-... .+.+.-||.++......|+ .+|.+.+..+.-||.+.-+++|+.|-+
T Consensus 343 YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEa-s~slcsWdaRtadr~~l~s--lgHn~a~R~i~HSP~~p~FmTcsdD~r 419 (430)
T KOG0640|consen 343 YTGAGTTGRQKHRTQAVFNHTEDYVLFPDEA-SNSLCSWDARTADRVALLS--LGHNGAVRWIVHSPVEPAFMTCSDDFR 419 (430)
T ss_pred EecCCcccchhhhhhhhhcCccceEEccccc-cCceeeccccchhhhhhcc--cCCCCCceEEEeCCCCCceeeecccce
Confidence 76432 123456788888888776543 6789999999987776554 457789999999999999999999999
Q ss_pred EEEEEcC
Q 043172 553 VFLYKLN 559 (564)
Q Consensus 553 V~lw~l~ 559 (564)
+++|--+
T Consensus 420 aRFWyrr 426 (430)
T KOG0640|consen 420 ARFWYRR 426 (430)
T ss_pred eeeeeec
Confidence 9999644
No 39
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.98 E-value=1.6e-31 Score=253.52 Aligned_cols=280 Identities=15% Similarity=0.255 Sum_probs=236.9
Q ss_pred CCCCCCeeEEEEcCCC-CEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCC
Q 043172 259 ESSTGPINSVQFHRNA-QLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVK 337 (564)
Q Consensus 259 ~~h~~~V~~l~fspdg-~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~ 337 (564)
.+|...|+|++=||.. ..+++|+.||.|+|||+. +..++.++..|.+.|..+++.. ..++++|.|++|+.|-+..
T Consensus 63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnls--qR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~ 138 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLS--QRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG 138 (433)
T ss_pred cccccccchhhcCcchhhhhhccccCceEEEEehh--hhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC
Confidence 3499999999999977 789999999999999998 5568888999999999999986 6888999999999999876
Q ss_pred CceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEecCC-CEEEEEeCCCe
Q 043172 338 AKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDG-KQLLSSGGDGQ 415 (564)
Q Consensus 338 ~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg-~~l~s~s~dg~ 415 (564)
. ....+.+.. .+..+.-+..+..++++|. .|.|||..-..++..+. ....|.++.|+|-. ..|++|+.|+.
T Consensus 139 ~---p~~tilg~s--~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrs 211 (433)
T KOG0268|consen 139 P---PLHTILGKS--VYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRS 211 (433)
T ss_pred C---cceeeeccc--cccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCc
Confidence 3 233333332 4566666666778888864 59999999999999988 66789999999954 56777789999
Q ss_pred EEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCc
Q 043172 416 VYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQ 495 (564)
Q Consensus 416 V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~ 495 (564)
|.+||+++..+++.+.... ....|||+|.+-.|++|++|..++.||++.. ..|+....+|.+.|.++.|||.|+
T Consensus 212 IvLyD~R~~~Pl~KVi~~m--RTN~IswnPeafnF~~a~ED~nlY~~DmR~l----~~p~~v~~dhvsAV~dVdfsptG~ 285 (433)
T KOG0268|consen 212 IVLYDLRQASPLKKVILTM--RTNTICWNPEAFNFVAANEDHNLYTYDMRNL----SRPLNVHKDHVSAVMDVDFSPTGQ 285 (433)
T ss_pred eEEEecccCCccceeeeec--cccceecCccccceeeccccccceehhhhhh----cccchhhcccceeEEEeccCCCcc
Confidence 9999999999998876544 4478999998888999999999999999976 488999999999999999999999
Q ss_pred EEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q 043172 496 ILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLN 559 (564)
Q Consensus 496 ~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~ 559 (564)
-+++||. |.+||||.+..+.....+-+. ....|.|+.||.|++|+++|++|+.|++|.-+
T Consensus 286 Efvsgsy--DksIRIf~~~~~~SRdiYhtk--RMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 286 EFVSGSY--DKSIRIFPVNHGHSRDIYHTK--RMQHVFCVKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred hhccccc--cceEEEeecCCCcchhhhhHh--hhheeeEEEEeccccEEEecCCCcceeeeecc
Confidence 9999999 999999999877654433222 23679999999999999999999999999865
No 40
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=3.2e-30 Score=231.69 Aligned_cols=285 Identities=18% Similarity=0.183 Sum_probs=242.9
Q ss_pred CCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECC
Q 043172 257 ADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLV 336 (564)
Q Consensus 257 ~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~ 336 (564)
....|+++|.++.|+-+|+|.+++|.|++|++|+.- ...++.+..+|...|..++.+.|+..+++|+.|+.+.+||++
T Consensus 12 ~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~--rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~ 89 (307)
T KOG0316|consen 12 ILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPL--RGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN 89 (307)
T ss_pred eecccccceEEEEEccCCCEEEEcCCCceEEeeccc--ccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcc
Confidence 345689999999999999999999999999999776 667999999999999999999999999999999999999999
Q ss_pred CCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCC--cEEEEee-ecCcEEEEEEecCCCEEEEEeCC
Q 043172 337 KAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTK--ELIGTLK-MNGTVRSLAFADDGKQLLSSGGD 413 (564)
Q Consensus 337 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~--~~~~~~~-~~~~V~~l~~spdg~~l~s~s~d 413 (564)
+|+.. ..+.+|.. .|+.+.|+.+...+++|+.|..+++||-++. ++++.+. ....|.++..+ +..|++|+.|
T Consensus 90 TGkv~--Rr~rgH~a-qVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~D 164 (307)
T KOG0316|consen 90 TGKVD--RRFRGHLA-QVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVD 164 (307)
T ss_pred cCeee--eecccccc-eeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccC
Confidence 99974 45777776 7999999999999999999999999999754 6677776 56788888886 6789999999
Q ss_pred CeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEcccccccee--EEEEc
Q 043172 414 GQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVD--FMKFN 491 (564)
Q Consensus 414 g~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~--~l~fs 491 (564)
|+++.||++.++...-+. +.+|++++|+++++..++++.++++++.|..++ +.+....+|...-. .++++
T Consensus 165 GtvRtydiR~G~l~sDy~---g~pit~vs~s~d~nc~La~~l~stlrLlDk~tG-----klL~sYkGhkn~eykldc~l~ 236 (307)
T KOG0316|consen 165 GTVRTYDIRKGTLSSDYF---GHPITSVSFSKDGNCSLASSLDSTLRLLDKETG-----KLLKSYKGHKNMEYKLDCCLN 236 (307)
T ss_pred CcEEEEEeecceeehhhc---CCcceeEEecCCCCEEEEeeccceeeecccchh-----HHHHHhcccccceeeeeeeec
Confidence 999999999988654433 347899999999999999999999999999998 89999988876543 45677
Q ss_pred CCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCCC
Q 043172 492 NDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNHY 561 (564)
Q Consensus 492 pdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~~ 561 (564)
....++++||. ||.|.+||+-....+..++.... -.|++++++|.-..|+++.. +.+.+|.-..|
T Consensus 237 qsdthV~sgSE--DG~Vy~wdLvd~~~~sk~~~~~~--v~v~dl~~hp~~~~f~~A~~-~~~~~~~~~~y 301 (307)
T KOG0316|consen 237 QSDTHVFSGSE--DGKVYFWDLVDETQISKLSVVST--VIVTDLSCHPTMDDFITATG-HGDLFWYQENY 301 (307)
T ss_pred ccceeEEeccC--CceEEEEEeccceeeeeeccCCc--eeEEeeecccCccceeEecC-Cceeceeehhh
Confidence 77788999998 99999999999888876655432 23789999998777777754 45777765444
No 41
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.98 E-value=5.7e-32 Score=260.11 Aligned_cols=262 Identities=17% Similarity=0.257 Sum_probs=222.5
Q ss_pred CCccCCCeeeee-eeeccc------CCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeC-CcCeE
Q 043172 239 SAKLSPGLLEYS-RLIDAN------ADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLE-DCPVR 310 (564)
Q Consensus 239 ~~~l~~~~~d~~-rl~~~~------~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~-~~~I~ 310 (564)
+++|..+.-.-. .||+.. ..+.|..+|+++.|++++.++++|+.+|.|++|+.... -+..++.| ...|+
T Consensus 108 GRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn---nVk~~~ahh~eaIR 184 (464)
T KOG0284|consen 108 GRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN---NVKIIQAHHAEAIR 184 (464)
T ss_pred CceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh---hhHHhhHhhhhhhh
Confidence 455554443332 444443 34689999999999999999999999999999987643 33444444 48999
Q ss_pred EEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee
Q 043172 311 KASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK 390 (564)
Q Consensus 311 ~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~ 390 (564)
+++|+|+...+++++.|++|+|||....+...+ +.||.- .|.++.|+|...+||++|.|..|++||.+++.++.++.
T Consensus 185 dlafSpnDskF~t~SdDg~ikiWdf~~~kee~v--L~GHgw-dVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh 261 (464)
T KOG0284|consen 185 DLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERV--LRGHGW-DVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLH 261 (464)
T ss_pred eeccCCCCceeEEecCCCeEEEEeccCCchhhe--eccCCC-CcceeccCCccceeEEccCCceeEeecCCCcchhhhhh
Confidence 999999999999999999999999988776444 566665 79999999999999999999999999999999999988
Q ss_pred -ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCC-CCEEEEEeCCCcEEEEeCCccc
Q 043172 391 -MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPD-GTFFAAGSDSGIVNVYNRQEFL 468 (564)
Q Consensus 391 -~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~-g~~lasgs~dg~V~iwd~~~~~ 468 (564)
|...|..+.|+|++++|+++|.|..++++|+++.+.+..+..+.. .++++.|+|- ..+|.+|+.||.|..|.+...
T Consensus 262 ~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkk-dv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~- 339 (464)
T KOG0284|consen 262 GHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKK-DVTSLTWHPLNESLFTSGGSDGSVVHWVVGLE- 339 (464)
T ss_pred hccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchh-hheeeccccccccceeeccCCCceEEEecccc-
Confidence 899999999999999999999999999999998888877775544 6899999995 458899999999999999854
Q ss_pred CCcceeeEEc-cccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcC
Q 043172 469 GGKRKPIKTI-ENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIP 514 (564)
Q Consensus 469 ~~~~~~~~~~-~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~ 514 (564)
.|+..+ .+|...|++++|+|-|.+|++|+. |.++++|.-.
T Consensus 340 ----~p~~~i~~AHd~~iwsl~~hPlGhil~tgsn--d~t~rfw~r~ 380 (464)
T KOG0284|consen 340 ----EPLGEIPPAHDGEIWSLAYHPLGHILATGSN--DRTVRFWTRN 380 (464)
T ss_pred ----ccccCCCcccccceeeeeccccceeEeecCC--CcceeeeccC
Confidence 666665 478999999999999999999998 9999999753
No 42
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.98 E-value=4.2e-30 Score=272.01 Aligned_cols=278 Identities=18% Similarity=0.254 Sum_probs=234.7
Q ss_pred cccCCCeEEcCCCccCCCeeeeeeee--cccCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeC
Q 043172 228 LRTDEDLVVKSSAKLSPGLLEYSRLI--DANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLE 305 (564)
Q Consensus 228 l~~~~~~~~~~~~~l~~~~~d~~rl~--~~~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~ 305 (564)
+...+..++..........|.....+ ......+|...|++++|+|++.++++|+.|++|+||++. .....+.++.+|
T Consensus 167 fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~-~~~~~~~~l~gH 245 (456)
T KOG0266|consen 167 FSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLK-DDGRNLKTLKGH 245 (456)
T ss_pred EcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeecc-CCCeEEEEecCC
Confidence 44455555544444444555554444 333447899999999999999999999999999999993 244688899999
Q ss_pred CcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-
Q 043172 306 DCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKE- 384 (564)
Q Consensus 306 ~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~- 384 (564)
...|++++|+|+|+.+++|+.|++|+|||+.++++.. .+.+|.. .|.+++|++++++|++++.|+.|++||+.++.
T Consensus 246 ~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~--~l~~hs~-~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~ 322 (456)
T KOG0266|consen 246 STYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVR--KLKGHSD-GISGLAFSPDGNLLVSASYDGTIRVWDLETGSK 322 (456)
T ss_pred CCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEE--eeeccCC-ceEEEEECCCCCEEEEcCCCccEEEEECCCCce
Confidence 9999999999999999999999999999999988754 4777776 79999999999999999999999999999999
Q ss_pred -EEEEee-ecC--cEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCc--ceEEEEECCCCCEEEEEeCCCc
Q 043172 385 -LIGTLK-MNG--TVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCI--NGTALCTSPDGTFFAAGSDSGI 458 (564)
Q Consensus 385 -~~~~~~-~~~--~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~--~i~~l~~sp~g~~lasgs~dg~ 458 (564)
++..+. +.. ++++++|+|++.+|++++.|+.+++||+..+.++..+..+... .+.+...++.+.++++|+.|+.
T Consensus 323 ~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~ 402 (456)
T KOG0266|consen 323 LCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGS 402 (456)
T ss_pred eeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCce
Confidence 455555 332 6999999999999999999999999999999999888876553 4455566789999999999999
Q ss_pred EEEEeCCcccCCcceeeEEcccc-ccceeEEEEcCCCcEEEEEecCCCCeEEEEEcC
Q 043172 459 VNVYNRQEFLGGKRKPIKTIENL-TTKVDFMKFNNDAQILAICSTMKKNSLKLIHIP 514 (564)
Q Consensus 459 V~iwd~~~~~~~~~~~~~~~~~~-~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~ 514 (564)
|.+|++.+. ..+..+.+| ...+..+.++|...++++++...|+.+++|...
T Consensus 403 v~~~~~~s~-----~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 403 VYVWDSSSG-----GILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred EEEEeCCcc-----chhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 999999987 888889999 899999999999999999996559999999754
No 43
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=5.7e-30 Score=262.54 Aligned_cols=296 Identities=17% Similarity=0.150 Sum_probs=252.1
Q ss_pred eeeeeeecccCCCCCCCCeeEEEEc-CCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEe
Q 043172 247 LEYSRLIDANADESSTGPINSVQFH-RNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAG 325 (564)
Q Consensus 247 ~d~~rl~~~~~~~~h~~~V~~l~fs-pdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~ 325 (564)
+|...+.-.....|-...|..|+|- |..++||+|+..+.+++|++.+.. .+.+.+|...|.++....+|-+|++|+
T Consensus 308 ~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~---c~ii~GH~e~vlSL~~~~~g~llat~s 384 (775)
T KOG0319|consen 308 YDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSY---CQIIPGHTEAVLSLDVWSSGDLLATGS 384 (775)
T ss_pred EEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCc---eEEEeCchhheeeeeecccCcEEEEec
Confidence 3455555555667778899999874 677999999999999999876543 337889999999999666788999999
Q ss_pred CCCeEEEEECCCCce--eeeccccccCCcceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCc-----EEEEe-----eec
Q 043172 326 RRKFFYSLDLVKAKA--DKIGPLVGREEKSLEFFEVSPDS-SVIAFVGNEGYILLVSSKTKE-----LIGTL-----KMN 392 (564)
Q Consensus 326 ~dg~i~iwdl~~~~~--~~~~~~~~~~~~~v~~~~~spdg-~~la~~~~dg~I~lwd~~t~~-----~~~~~-----~~~ 392 (564)
.|.++++|.++.+.. ..+....+|.. .|.+++++..+ .+|++++.|++|++|++...+ .+.+. .|.
T Consensus 385 KD~svilWr~~~~~~~~~~~a~~~gH~~-svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHd 463 (775)
T KOG0319|consen 385 KDKSVILWRLNNNCSKSLCVAQANGHTN-SVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHD 463 (775)
T ss_pred CCceEEEEEecCCcchhhhhhhhccccc-ccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhc
Confidence 999999999955432 23344556665 79999997754 588999999999999997521 11111 188
Q ss_pred CcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcc
Q 043172 393 GTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKR 472 (564)
Q Consensus 393 ~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~ 472 (564)
..|++++++|+.++|++||.|.+.++|++.....+..+..|.. ++.++.|+|..+.+|++|.|++|+||.+.++
T Consensus 464 KdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~R-Gvw~V~Fs~~dq~laT~SgD~TvKIW~is~f----- 537 (775)
T KOG0319|consen 464 KDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTR-GVWCVSFSKNDQLLATCSGDKTVKIWSISTF----- 537 (775)
T ss_pred ccccceEecCCCceEEecccccceeeecccCceEEEEeeCCcc-ceEEEEeccccceeEeccCCceEEEEEeccc-----
Confidence 8999999999999999999999999999998888888776554 7999999999999999999999999999998
Q ss_pred eeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCe
Q 043172 473 KPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGK 552 (564)
Q Consensus 473 ~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~ 552 (564)
.+++++.+|...|..+.|-.+|..|++++. ||-|+||++.+..+..++. .|...|++++.+|.+.++++|+.||.
T Consensus 538 SClkT~eGH~~aVlra~F~~~~~qliS~~a--dGliKlWnikt~eC~~tlD---~H~DrvWaL~~~~~~~~~~tgg~Dg~ 612 (775)
T KOG0319|consen 538 SCLKTFEGHTSAVLRASFIRNGKQLISAGA--DGLIKLWNIKTNECEMTLD---AHNDRVWALSVSPLLDMFVTGGGDGR 612 (775)
T ss_pred eeeeeecCccceeEeeeeeeCCcEEEeccC--CCcEEEEeccchhhhhhhh---hccceeEEEeecCccceeEecCCCeE
Confidence 999999999999999999999999999998 9999999999999988664 45589999999999999999999999
Q ss_pred EEEEE
Q 043172 553 VFLYK 557 (564)
Q Consensus 553 V~lw~ 557 (564)
|.+|.
T Consensus 613 i~~wk 617 (775)
T KOG0319|consen 613 IIFWK 617 (775)
T ss_pred EEEee
Confidence 99996
No 44
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=1.2e-29 Score=242.37 Aligned_cols=283 Identities=17% Similarity=0.218 Sum_probs=235.9
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCC---CEEEEEeCCCeEEEEECCC
Q 043172 261 STGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDG---SQAIIAGRRKFFYSLDLVK 337 (564)
Q Consensus 261 h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg---~~l~s~~~dg~i~iwdl~~ 337 (564)
|...|.+|... +..+++|++||++++|+..++ .+..+.+|.++|.+++|.-.. ..|++++.|.++++|-++.
T Consensus 104 hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk---~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~ 178 (423)
T KOG0313|consen 104 HDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGK---SIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV 178 (423)
T ss_pred chhhhhhhccc--CceEEEeecCCeeEEEecCCc---eEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence 88899999888 789999999999999998654 778889999999999887433 3599999999999999887
Q ss_pred Cceee--eccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECC-------------------------CCcEEEEee
Q 043172 338 AKADK--IGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSK-------------------------TKELIGTLK 390 (564)
Q Consensus 338 ~~~~~--~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~-------------------------t~~~~~~~~ 390 (564)
+.... +....||.. +|.++...++|..+++|+.|..|.||+.. ++.++.++.
T Consensus 179 ~~~~~~~~~~~~GHk~-~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~ 257 (423)
T KOG0313|consen 179 GENKVKALKVCRGHKR-SVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLE 257 (423)
T ss_pred chhhhhHHhHhccccc-ceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEec
Confidence 75422 222336665 89999999999999999999999999931 123444555
Q ss_pred -ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccC
Q 043172 391 -MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLG 469 (564)
Q Consensus 391 -~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~ 469 (564)
|..+|.++.|++ ...+++++.|.+|+.||+.++.++..+.... ...++.++|..++||+|+.|..+++||.+.+
T Consensus 258 GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~k--sl~~i~~~~~~~Ll~~gssdr~irl~DPR~~-- 332 (423)
T KOG0313|consen 258 GHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK--SLNCISYSPLSKLLASGSSDRHIRLWDPRTG-- 332 (423)
T ss_pred ccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCc--ceeEeecccccceeeecCCCCceeecCCCCC--
Confidence 889999999998 6689999999999999999999988776554 5689999999999999999999999999987
Q ss_pred CcceeeEEccccccceeEEEEcCCCc-EEEEEecCCCCeEEEEEcCCCc-eeccCCCCCCCCCCcEEEEEeCCCCEEEEE
Q 043172 470 GKRKPIKTIENLTTKVDFMKFNNDAQ-ILAICSTMKKNSLKLIHIPSYN-VFSNWPPANRNLQYPRCLDFSPGGGFMAVG 547 (564)
Q Consensus 470 ~~~~~~~~~~~~~~~I~~l~fspdg~-~La~~s~~~d~~I~lwdl~s~~-~~~~~~~~~~~~~~V~~l~fspdg~~Lasg 547 (564)
...-+..++.+|..+|.++.|+|... .|+++|. |+++++||+++.. ++. ...+|...|.++.|.. +.++++|
T Consensus 333 ~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~--D~t~klWDvRS~k~ply---dI~~h~DKvl~vdW~~-~~~IvSG 406 (423)
T KOG0313|consen 333 DGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSY--DNTVKLWDVRSTKAPLY---DIAGHNDKVLSVDWNE-GGLIVSG 406 (423)
T ss_pred CCceeEEeeecchhhhhheecCCCCceEEEEEec--CCeEEEEEeccCCCcce---eeccCCceEEEEeccC-CceEEec
Confidence 44567778999999999999999665 5667777 9999999999876 443 3445668899999974 5789999
Q ss_pred cCCCeEEEEEcCC
Q 043172 548 NAAGKVFLYKLNH 560 (564)
Q Consensus 548 s~dG~V~lw~l~~ 560 (564)
+.|.+|+|+.-..
T Consensus 407 GaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 407 GADNKLRIFKGSP 419 (423)
T ss_pred cCcceEEEecccc
Confidence 9999999997643
No 45
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=1.4e-30 Score=235.73 Aligned_cols=285 Identities=18% Similarity=0.238 Sum_probs=245.1
Q ss_pred CCCCCCCeeEEEEcC---CCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEE
Q 043172 258 DESSTGPINSVQFHR---NAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLD 334 (564)
Q Consensus 258 ~~~h~~~V~~l~fsp---dg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwd 334 (564)
-++|+.||-.++||| +|-+|++++.|+.-.|-+ +.++.-+-++.+|.+.|.+.++..+....++++.|-+-+|||
T Consensus 10 c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~--g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~ 87 (334)
T KOG0278|consen 10 CHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRN--GDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD 87 (334)
T ss_pred EcCCCcceeEEeccCCCCCceEEEEeccCCCchhcc--CCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence 468999999999997 888999999999887764 446678999999999999999998888889999999999999
Q ss_pred CCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-EEEEee-ecCcEEEEEEecCCCEEEEEeC
Q 043172 335 LVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKE-LIGTLK-MNGTVRSLAFADDGKQLLSSGG 412 (564)
Q Consensus 335 l~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~-~~~~~~-~~~~V~~l~~spdg~~l~s~s~ 412 (564)
.-+|... ..+. |. ..|..++|+.|.++|++|+.+..++|||++..+ +...+. |.+.|..+-|....+.|++++.
T Consensus 88 a~tgdel--hsf~-hk-hivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSad 163 (334)
T KOG0278|consen 88 AVTGDEL--HSFE-HK-HIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSAD 163 (334)
T ss_pred hhhhhhh--hhhh-hh-heeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeecc
Confidence 9998763 3333 22 369999999999999999999999999997654 233344 8999999999998899999999
Q ss_pred CCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcC
Q 043172 413 DGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNN 492 (564)
Q Consensus 413 dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fsp 492 (564)
|++|++||.+++..++++...+ +++++.++++|++|.++ ..+.|.+||..+. .+++.+. ....|.+...+|
T Consensus 164 d~tVRLWD~rTgt~v~sL~~~s--~VtSlEvs~dG~ilTia-~gssV~Fwdaksf-----~~lKs~k-~P~nV~SASL~P 234 (334)
T KOG0278|consen 164 DKTVRLWDHRTGTEVQSLEFNS--PVTSLEVSQDGRILTIA-YGSSVKFWDAKSF-----GLLKSYK-MPCNVESASLHP 234 (334)
T ss_pred CCceEEEEeccCcEEEEEecCC--CCcceeeccCCCEEEEe-cCceeEEeccccc-----cceeecc-CccccccccccC
Confidence 9999999999999999887665 56899999999877655 4568999999987 7887776 467799999999
Q ss_pred CCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCCC
Q 043172 493 DAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNHY 561 (564)
Q Consensus 493 dg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~~ 561 (564)
+..++++|+. |..++.||..++..+..+ ..+|.++|.|+.|||+|...|+|+.||+|+||.....
T Consensus 235 ~k~~fVaGge--d~~~~kfDy~TgeEi~~~--nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 235 KKEFFVAGGE--DFKVYKFDYNTGEEIGSY--NKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred CCceEEecCc--ceEEEEEeccCCceeeec--ccCCCCceEEEEECCCCceeeccCCCceEEEEEecCC
Confidence 9988888888 999999999999887754 4677899999999999999999999999999998644
No 46
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=5.7e-31 Score=253.65 Aligned_cols=286 Identities=17% Similarity=0.187 Sum_probs=250.8
Q ss_pred CCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECC
Q 043172 257 ADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLV 336 (564)
Q Consensus 257 ~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~ 336 (564)
....|.+.|..+.|-++...|++||.|..|++|++.+.+...+.++.+..++|+.+.|.+++.++++++.|+.+++|++.
T Consensus 170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd 249 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVD 249 (459)
T ss_pred hhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeecc
Confidence 34569999999999999999999999999999999988877888999999999999999999999999999999999999
Q ss_pred CCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEEeCCCeE
Q 043172 337 KAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSGGDGQV 416 (564)
Q Consensus 337 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s~dg~V 416 (564)
..+. ..++.||.. .|+++.|......+++|+.|.+|++||+....+..++.....+.+|+.+ ...+++|-.|+.|
T Consensus 250 ~~r~--~~TLsGHtd-kVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~Dkkv 324 (459)
T KOG0288|consen 250 SLRL--RHTLSGHTD-KVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKV 324 (459)
T ss_pred chhh--hhhhccccc-ceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEec--ceeeeecccccce
Confidence 8886 456888777 6999999987777999999999999999999888888777778888877 5568888899999
Q ss_pred EEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccc----cccceeEEEEcC
Q 043172 417 YHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIEN----LTTKVDFMKFNN 492 (564)
Q Consensus 417 ~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~----~~~~I~~l~fsp 492 (564)
++||+++..++.....++ .++++..+++|..|.+++.|.++.++|+++. ....++.. .....+.+.|||
T Consensus 325 RfwD~Rs~~~~~sv~~gg--~vtSl~ls~~g~~lLsssRDdtl~viDlRt~-----eI~~~~sA~g~k~asDwtrvvfSp 397 (459)
T KOG0288|consen 325 RFWDIRSADKTRSVPLGG--RVTSLDLSMDGLELLSSSRDDTLKVIDLRTK-----EIRQTFSAEGFKCASDWTRVVFSP 397 (459)
T ss_pred EEEeccCCceeeEeecCc--ceeeEeeccCCeEEeeecCCCceeeeecccc-----cEEEEeeccccccccccceeEECC
Confidence 999999999988877655 6899999999999999999999999999986 44444432 124478899999
Q ss_pred CCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEE
Q 043172 493 DAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYK 557 (564)
Q Consensus 493 dg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~ 557 (564)
++.|+++||. ||.|+||++.++++.........+ ..|++++|+|.|.+|++++.++.+.+|.
T Consensus 398 d~~YvaAGS~--dgsv~iW~v~tgKlE~~l~~s~s~-~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 398 DGSYVAAGSA--DGSVYIWSVFTGKLEKVLSLSTSN-AAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred CCceeeeccC--CCcEEEEEccCceEEEEeccCCCC-cceEEEEEcCCCchhhcccCCcceEecC
Confidence 9999999999 999999999999988766554433 3699999999999999999999999994
No 47
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.9e-30 Score=249.66 Aligned_cols=276 Identities=15% Similarity=0.227 Sum_probs=230.6
Q ss_pred cccCCCeEEcCCCccCCCeeeee---eeecccCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEE-E
Q 043172 228 LRTDEDLVVKSSAKLSPGLLEYS---RLIDANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSI-F 303 (564)
Q Consensus 228 l~~~~~~~~~~~~~l~~~~~d~~---rl~~~~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~-~ 303 (564)
++.+|.++++.++.-...+|.+. +++-..+..+|..+|..+.||||.++|++|+.+..+.+||++++. ....+ +
T Consensus 232 FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd--~~~~y~~ 309 (519)
T KOG0293|consen 232 FSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGD--LRHLYPS 309 (519)
T ss_pred EcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcch--hhhhccc
Confidence 56678888887788778888775 455567788999999999999999999999999999999998654 33222 2
Q ss_pred eCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 043172 304 LEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTK 383 (564)
Q Consensus 304 ~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~ 383 (564)
++...+.+++|.|||..+++|+.|++|..||+...... ...+.....|.++++++||+++++.+.|..|.+++..+.
T Consensus 310 ~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~---~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~ 386 (519)
T KOG0293|consen 310 GLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILG---NWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREAR 386 (519)
T ss_pred CcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhh---cccccccceeEEEEEcCCCcEEEEEecccceeeechhhh
Confidence 24678999999999999999999999999999876532 233444446999999999999999999999999999888
Q ss_pred cEEEEeeecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecC-CcceEEEEECC-CCCEEEEEeCCCcEEE
Q 043172 384 ELIGTLKMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEG-CINGTALCTSP-DGTFFAAGSDSGIVNV 461 (564)
Q Consensus 384 ~~~~~~~~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~-~~~i~~l~~sp-~g~~lasgs~dg~V~i 461 (564)
..+..+....+|++++.+.+++++++.-.+..|++||+...+.+.++.++. +..+..-||.. +..++|+||+|+.|+|
T Consensus 387 ~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyI 466 (519)
T KOG0293|consen 387 VDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYI 466 (519)
T ss_pred hhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEE
Confidence 777767778899999999999999999999999999999888888877653 22344445654 4479999999999999
Q ss_pred EeCCcccCCcceeeEEccccccceeEEEEcCCC-cEEEEEecCCCCeEEEEEcCC
Q 043172 462 YNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDA-QILAICSTMKKNSLKLIHIPS 515 (564)
Q Consensus 462 wd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg-~~La~~s~~~d~~I~lwdl~s 515 (564)
|+..++ +++.++.+|...|++|+|+|.. .++|+|+. ||+||||-...
T Consensus 467 Whr~sg-----kll~~LsGHs~~vNcVswNP~~p~m~ASasD--DgtIRIWg~~~ 514 (519)
T KOG0293|consen 467 WHRISG-----KLLAVLSGHSKTVNCVSWNPADPEMFASASD--DGTIRIWGPSD 514 (519)
T ss_pred EEccCC-----ceeEeecCCcceeeEEecCCCCHHHhhccCC--CCeEEEecCCc
Confidence 999998 9999999999999999999965 55677776 99999998753
No 48
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=8.2e-31 Score=247.08 Aligned_cols=274 Identities=10% Similarity=0.119 Sum_probs=229.7
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCce
Q 043172 261 STGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKA 340 (564)
Q Consensus 261 h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~ 340 (564)
....|+|+++. ...+++|..|++|+|||.. ...++..+.+|.+.|.|+.|. .+.|++|+.|.+|+|||++++++
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n--~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~ 269 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKN--SLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEP 269 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccc--cHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCch
Confidence 55789999985 5679999999999999887 456778889999999999985 56899999999999999999997
Q ss_pred eeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE---Eee-ecCcEEEEEEecCCCEEEEEeCCCeE
Q 043172 341 DKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIG---TLK-MNGTVRSLAFADDGKQLLSSGGDGQV 416 (564)
Q Consensus 341 ~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~---~~~-~~~~V~~l~~spdg~~l~s~s~dg~V 416 (564)
.+ .+.+|.. .|..+.|+ ..++++++.|.+|.+||+.+...+. .+. |...|+.+.|+ .+++++++.|.+|
T Consensus 270 l~--tlihHce-aVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTi 342 (499)
T KOG0281|consen 270 LN--TLIHHCE-AVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTI 342 (499)
T ss_pred hh--HHhhhcc-eeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceE
Confidence 44 4666665 78888887 5699999999999999998765432 222 78899999996 5699999999999
Q ss_pred EEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcE
Q 043172 417 YHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQI 496 (564)
Q Consensus 417 ~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~ 496 (564)
++|++.+..++..+..+.. +|.|+.+ .|+++++||.|.+|++||+..+ .+++.+.+|..-|.++.| |.+.
T Consensus 343 kvW~~st~efvRtl~gHkR-GIAClQY--r~rlvVSGSSDntIRlwdi~~G-----~cLRvLeGHEeLvRciRF--d~kr 412 (499)
T KOG0281|consen 343 KVWSTSTCEFVRTLNGHKR-GIACLQY--RDRLVVSGSSDNTIRLWDIECG-----ACLRVLEGHEELVRCIRF--DNKR 412 (499)
T ss_pred EEEeccceeeehhhhcccc-cceehhc--cCeEEEecCCCceEEEEecccc-----HHHHHHhchHHhhhheee--cCce
Confidence 9999999999998876654 5666654 6899999999999999999998 999999999999999999 4678
Q ss_pred EEEEecCCCCeEEEEEcCCCceecc------CCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCCC
Q 043172 497 LAICSTMKKNSLKLIHIPSYNVFSN------WPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNHY 561 (564)
Q Consensus 497 La~~s~~~d~~I~lwdl~s~~~~~~------~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~~ 561 (564)
+++|.. ||.|++||+..+..... +.+...|.+.|..+.|. ...+++++.|.+|.||++.++
T Consensus 413 IVSGaY--DGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 413 IVSGAY--DGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred eeeccc--cceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEEcCCC
Confidence 999998 99999999987644321 12234567889999995 467889999999999998765
No 49
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=1.5e-29 Score=249.52 Aligned_cols=292 Identities=16% Similarity=0.207 Sum_probs=230.5
Q ss_pred CCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCC--ceeEEE-EeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEE
Q 043172 258 DESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRN--TKIQSI-FLEDCPVRKASFLPDGSQAIIAGRRKFFYSLD 334 (564)
Q Consensus 258 ~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~--~~~~~~-~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwd 334 (564)
..+|+..|+++++.|.|..|++||.|.+|++||+.+... +....+ ......|.++.|++.|..|++.+.....+|+|
T Consensus 163 l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~D 242 (641)
T KOG0772|consen 163 LKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLD 242 (641)
T ss_pred ccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEc
Confidence 345889999999999999999999999999999976431 122222 23456899999999999999999889999999
Q ss_pred CCCCceeee----------ccccccCCcceEEEEEcCCC-CEEEEEeCCCeEEEEECCCC-cEEEEeee------cCcEE
Q 043172 335 LVKAKADKI----------GPLVGREEKSLEFFEVSPDS-SVIAFVGNEGYILLVSSKTK-ELIGTLKM------NGTVR 396 (564)
Q Consensus 335 l~~~~~~~~----------~~~~~~~~~~v~~~~~spdg-~~la~~~~dg~I~lwd~~t~-~~~~~~~~------~~~V~ 396 (564)
-........ ....||.. .++|.+|+|.. ..+++++.||+++||++... .....+++ .-+++
T Consensus 243 RdG~~~~e~~KGDQYI~Dm~nTKGHia-~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~t 321 (641)
T KOG0772|consen 243 RDGFEIVEFSKGDQYIRDMYNTKGHIA-ELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVT 321 (641)
T ss_pred cCCceeeeeeccchhhhhhhccCCcee-eeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCce
Confidence 776544322 12345544 68999999964 57889999999999999754 34445542 23689
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEECCCCc--eeEEEeecC--CcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcc
Q 043172 397 SLAFADDGKQLLSSGGDGQVYHWDLRTRT--CIHRAVDEG--CINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKR 472 (564)
Q Consensus 397 ~l~~spdg~~l~s~s~dg~V~lwD~~~~~--~~~~~~~~~--~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~ 472 (564)
.++|+|+|+.|++|..||.|.+|+..+.. ....+...| +..|+||+||++|++|++-+.|+++++||++.. .
T Consensus 322 sC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~----k 397 (641)
T KOG0772|consen 322 SCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQF----K 397 (641)
T ss_pred eeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccc----c
Confidence 99999999999999999999999986532 233333333 337999999999999999999999999999976 4
Q ss_pred eeeEEcccccc--ceeEEEEcCCCcEEEEEecCC----CCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEE
Q 043172 473 KPIKTIENLTT--KVDFMKFNNDAQILAICSTMK----KNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAV 546 (564)
Q Consensus 473 ~~~~~~~~~~~--~I~~l~fspdg~~La~~s~~~----d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Las 546 (564)
+|+.+..+..+ +-+.++|||+.++|++|+... .+.+.+|+..+...+..+.... ..|..+.|+|.-+.|++
T Consensus 398 kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~---aSvv~~~WhpkLNQi~~ 474 (641)
T KOG0772|consen 398 KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIST---ASVVRCLWHPKLNQIFA 474 (641)
T ss_pred cchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCC---ceEEEEeecchhhheee
Confidence 67777665543 567899999999999987643 3679999999988877666553 56888999999889999
Q ss_pred EcCCCeEEEEE
Q 043172 547 GNAAGKVFLYK 557 (564)
Q Consensus 547 gs~dG~V~lw~ 557 (564)
|+.||.+++|=
T Consensus 475 gsgdG~~~vyY 485 (641)
T KOG0772|consen 475 GSGDGTAHVYY 485 (641)
T ss_pred ecCCCceEEEE
Confidence 99999999873
No 50
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=6e-30 Score=242.30 Aligned_cols=250 Identities=16% Similarity=0.215 Sum_probs=224.9
Q ss_pred ceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEE
Q 043172 297 TKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYIL 376 (564)
Q Consensus 297 ~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~ 376 (564)
+....+.+|.+.|.|+++.|...++++|+.|+++.|||+.+|+.. .++.||-. .|..+++|+-..|+++++.|+.|+
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lk--ltltGhi~-~vr~vavS~rHpYlFs~gedk~VK 218 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLK--LTLTGHIE-TVRGVAVSKRHPYLFSAGEDKQVK 218 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEE--Eeecchhh-eeeeeeecccCceEEEecCCCeeE
Confidence 345567889999999999999999999999999999999999974 35778776 799999999999999999999999
Q ss_pred EEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeC
Q 043172 377 LVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSD 455 (564)
Q Consensus 377 lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~ 455 (564)
.||+...+.++.+. |-..|.|++.+|.-..|++|+.|.++++||+++...+..+..+.. .|.++.+.|....+++||.
T Consensus 219 CwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~-~V~~V~~~~~dpqvit~S~ 297 (460)
T KOG0285|consen 219 CWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTN-PVASVMCQPTDPQVITGSH 297 (460)
T ss_pred EEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCC-cceeEEeecCCCceEEecC
Confidence 99999999998887 889999999999999999999999999999999999988876554 7889999888889999999
Q ss_pred CCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEE
Q 043172 456 SGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCL 535 (564)
Q Consensus 456 dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l 535 (564)
|++|++||++.+ +...++..|...|.+++.+|.-..+|+++. ..|+-|+++.+....++ .+|...|+++
T Consensus 298 D~tvrlWDl~ag-----kt~~tlt~hkksvral~lhP~e~~fASas~---dnik~w~~p~g~f~~nl---sgh~~iintl 366 (460)
T KOG0285|consen 298 DSTVRLWDLRAG-----KTMITLTHHKKSVRALCLHPKENLFASASP---DNIKQWKLPEGEFLQNL---SGHNAIINTL 366 (460)
T ss_pred CceEEEeeeccC-----ceeEeeecccceeeEEecCCchhhhhccCC---ccceeccCCccchhhcc---ccccceeeee
Confidence 999999999998 899999999999999999999988888885 67999999999988874 4455789999
Q ss_pred EEeCCCCEEEEEcCCCeEEEEEcCCCC
Q 043172 536 DFSPGGGFMAVGNAAGKVFLYKLNHYH 562 (564)
Q Consensus 536 ~fspdg~~Lasgs~dG~V~lw~l~~~~ 562 (564)
+...| .++++|++.|.+.+||..+..
T Consensus 367 ~~nsD-~v~~~G~dng~~~fwdwksg~ 392 (460)
T KOG0285|consen 367 SVNSD-GVLVSGGDNGSIMFWDWKSGH 392 (460)
T ss_pred eeccC-ceEEEcCCceEEEEEecCcCc
Confidence 98887 578899999999999987643
No 51
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.4e-28 Score=225.66 Aligned_cols=272 Identities=14% Similarity=0.188 Sum_probs=214.8
Q ss_pred CCeEEcCCCccCCCeeeeee-----eecccCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCC
Q 043172 232 EDLVVKSSAKLSPGLLEYSR-----LIDANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLED 306 (564)
Q Consensus 232 ~~~~~~~~~~l~~~~~d~~r-----l~~~~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~ 306 (564)
|.++++++..-...+|+... ++.. ...+|+..|.+++|+|.|++|++||.|.++.||.-......++..+.+|.
T Consensus 27 g~ilAscg~Dk~vriw~~~~~~s~~ck~v-ld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHE 105 (312)
T KOG0645|consen 27 GVILASCGTDKAVRIWSTSSGDSWTCKTV-LDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHE 105 (312)
T ss_pred ceEEEeecCCceEEEEecCCCCcEEEEEe-ccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccc
Confidence 33555555555555555441 1111 23479999999999999999999999999999998877888999999999
Q ss_pred cCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCc-eeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECC-CC-
Q 043172 307 CPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAK-ADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSK-TK- 383 (564)
Q Consensus 307 ~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~-~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~-t~- 383 (564)
..|.|++|+++|++||++++|+.|.||.+..+. .....-+..|.. .|..+.|+|...+|++++.|.+|++|.-. ..
T Consensus 106 nEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~Htq-DVK~V~WHPt~dlL~S~SYDnTIk~~~~~~ddd 184 (312)
T KOG0645|consen 106 NEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQ-DVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDD 184 (312)
T ss_pred cceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccc-cccEEEEcCCcceeEEeccCCeEEEEeecCCCC
Confidence 999999999999999999999999999988543 333444556554 79999999999999999999999999876 33
Q ss_pred -cEEEEee-ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEE
Q 043172 384 -ELIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNV 461 (564)
Q Consensus 384 -~~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~i 461 (564)
++++++. |.+.|.+++|++.|..|++++.|++|+||-..+ .+...+...+..+.|. ...||+++.|+.|++
T Consensus 185 W~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~-----~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~l 257 (312)
T KOG0645|consen 185 WECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYT-----DLSGMHSRALYDVPWD--NGVIASGGGDDAIRL 257 (312)
T ss_pred eeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeecc-----CcchhcccceEeeeec--ccceEeccCCCEEEE
Confidence 4566666 778999999999999999999999999998762 2333344567788887 458999999999999
Q ss_pred EeCCccc-CCcceeeE-EccccccceeEEEEcCC-CcEEEEEecCCCCeEEEEEcC
Q 043172 462 YNRQEFL-GGKRKPIK-TIENLTTKVDFMKFNND-AQILAICSTMKKNSLKLIHIP 514 (564)
Q Consensus 462 wd~~~~~-~~~~~~~~-~~~~~~~~I~~l~fspd-g~~La~~s~~~d~~I~lwdl~ 514 (564)
|...... ......+. .-..|...|++++|+|. ..+|++++. ||.|++|.+.
T Consensus 258 f~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~D--DG~v~~W~l~ 311 (312)
T KOG0645|consen 258 FKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGD--DGIVNFWELE 311 (312)
T ss_pred EEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCC--CceEEEEEec
Confidence 9877531 11112222 23468889999999995 678888887 9999999874
No 52
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=6.5e-29 Score=265.55 Aligned_cols=289 Identities=19% Similarity=0.218 Sum_probs=239.7
Q ss_pred CCCCeeEEEEcCCCCEEEEEe--CCCcEEEEEecCC----------CCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCC
Q 043172 261 STGPINSVQFHRNAQLLLVAG--LDRRLRFFQIDGK----------RNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRK 328 (564)
Q Consensus 261 h~~~V~~l~fspdg~~l~s~s--~dg~I~lwd~~~~----------~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg 328 (564)
+...|.++..||+|..++||| .|+.++||+.+.- -.+.+..+..|.+.|.|+.|+|||.+||+|+.|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 456799999999999999999 8999999987531 1345667778999999999999999999999999
Q ss_pred eEEEEECCC---C-------------ceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-e
Q 043172 329 FFYSLDLVK---A-------------KADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-M 391 (564)
Q Consensus 329 ~i~iwdl~~---~-------------~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~ 391 (564)
.|.||.... + ....+..+.+|.. .|..++|+|++.+|++++.|++|.||+..+.+.+..+. |
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~-DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H 170 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDS-DVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGH 170 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCC-ccceeccCCCccEEEEecccceEEEEccccceeeeeeecc
Confidence 999999873 0 0112334566665 79999999999999999999999999999999999998 9
Q ss_pred cCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeec-----CCcceEEEEECCCCCEEEEEeC----CCcEEEE
Q 043172 392 NGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDE-----GCINGTALCTSPDGTFFAAGSD----SGIVNVY 462 (564)
Q Consensus 392 ~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~-----~~~~i~~l~~sp~g~~lasgs~----dg~V~iw 462 (564)
.+.|..+.|.|-|++|++-+.|++|++|.+..-.+.+.+..+ .......+.|||+|.+|++... -.++.|.
T Consensus 171 ~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~Ii 250 (942)
T KOG0973|consen 171 QSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAII 250 (942)
T ss_pred cccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEE
Confidence 999999999999999999999999999998876666665542 2334678999999999998742 3478899
Q ss_pred eCCcccCCcceeeEEccccccceeEEEEcCC------C---------c--EEEEEecCCCCeEEEEEcCCCceeccCCCC
Q 043172 463 NRQEFLGGKRKPIKTIENLTTKVDFMKFNND------A---------Q--ILAICSTMKKNSLKLIHIPSYNVFSNWPPA 525 (564)
Q Consensus 463 d~~~~~~~~~~~~~~~~~~~~~I~~l~fspd------g---------~--~La~~s~~~d~~I~lwdl~s~~~~~~~~~~ 525 (564)
+..++ +.-..+-+|..++.++.|+|. . . .+|+||. |++|-||.....+++.....
T Consensus 251 eR~tW-----k~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSq--DrSlSVW~T~~~RPl~vi~~- 322 (942)
T KOG0973|consen 251 ERGTW-----KVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQ--DRSLSVWNTALPRPLFVIHN- 322 (942)
T ss_pred ecCCc-----eeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecC--CccEEEEecCCCCchhhhhh-
Confidence 98877 888889999999999999981 1 1 4566666 99999999977666543322
Q ss_pred CCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q 043172 526 NRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLN 559 (564)
Q Consensus 526 ~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~ 559 (564)
-....|..++|+|||..|++++.||+|.+..+.
T Consensus 323 -lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fe 355 (942)
T KOG0973|consen 323 -LFNKSIVDMSWSPDGFSLFACSLDGTVALIHFE 355 (942)
T ss_pred -hhcCceeeeeEcCCCCeEEEEecCCeEEEEEcc
Confidence 223679999999999999999999999998774
No 53
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=7.6e-29 Score=254.32 Aligned_cols=284 Identities=16% Similarity=0.190 Sum_probs=245.0
Q ss_pred CCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCC
Q 043172 258 DESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVK 337 (564)
Q Consensus 258 ~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~ 337 (564)
..+|...|.+++||.+...+++|+ .+.|+||+.+ +..++.++.. +.+.+..|.|.++++++|...|.+.+||+.+
T Consensus 369 ~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~--t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS 443 (888)
T KOG0306|consen 369 IGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRD--TLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLAS 443 (888)
T ss_pred eccchhheeEEEeecCceeeeecC-CCcEEEEEcc--CcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeeh
Confidence 357999999999999988888775 6789999988 4457777653 4789999999999999999999999999998
Q ss_pred CceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCC-----Cc--EE------EEeeecCcEEEEEEecCC
Q 043172 338 AKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKT-----KE--LI------GTLKMNGTVRSLAFADDG 404 (564)
Q Consensus 338 ~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t-----~~--~~------~~~~~~~~V~~l~~spdg 404 (564)
.... -.+..|.. .++.++.+||+..+++|+.|.+|++||..- +. .+ .++.....|.|+.++|||
T Consensus 444 ~~l~--Eti~AHdg-aIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdg 520 (888)
T KOG0306|consen 444 ASLV--ETIRAHDG-AIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDG 520 (888)
T ss_pred hhhh--hhhhcccc-ceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCC
Confidence 8763 33455554 899999999999999999999999999741 11 11 233356789999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccc
Q 043172 405 KQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTK 484 (564)
Q Consensus 405 ~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~ 484 (564)
++|+++--|.+|++|-+.+.+....+. .|..++.|+.+||+++.++|||.|..|+||-+.-+ .+-+.+.+|...
T Consensus 521 k~LaVsLLdnTVkVyflDtlKFflsLY-GHkLPV~smDIS~DSklivTgSADKnVKiWGLdFG-----DCHKS~fAHdDS 594 (888)
T KOG0306|consen 521 KLLAVSLLDNTVKVYFLDTLKFFLSLY-GHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFG-----DCHKSFFAHDDS 594 (888)
T ss_pred cEEEEEeccCeEEEEEecceeeeeeec-ccccceeEEeccCCcCeEEeccCCCceEEeccccc-----hhhhhhhcccCc
Confidence 999999999999999999888766665 45679999999999999999999999999999988 889999999999
Q ss_pred eeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCC
Q 043172 485 VDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNH 560 (564)
Q Consensus 485 I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~ 560 (564)
|.++.|.|...++++++. |+.|+-||-.....++.+ .+|...|+|++.+|+|.|+++++.|..|++|.-..
T Consensus 595 vm~V~F~P~~~~FFt~gK--D~kvKqWDg~kFe~iq~L---~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 595 VMSVQFLPKTHLFFTCGK--DGKVKQWDGEKFEEIQKL---DGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred eeEEEEcccceeEEEecC--cceEEeechhhhhhheee---ccchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 999999999999999888 999999998887777654 45568899999999999999999999999998643
No 54
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=5.1e-28 Score=238.05 Aligned_cols=268 Identities=24% Similarity=0.367 Sum_probs=222.0
Q ss_pred CCeEEcCCCccCCCeeeeeeeecccCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEE
Q 043172 232 EDLVVKSSAKLSPGLLEYSRLIDANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRK 311 (564)
Q Consensus 232 ~~~~~~~~~~l~~~~~d~~rl~~~~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~ 311 (564)
+.++..+...-....|++...........|...|.++.|+|++++|++++.++.|++|++... ..+..+..|...|.+
T Consensus 21 ~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~--~~~~~~~~~~~~i~~ 98 (289)
T cd00200 21 GKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG--ECVRTLTGHTSYVSS 98 (289)
T ss_pred CCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc--cceEEEeccCCcEEE
Confidence 344444333333345555433233345678899999999999999999999999999999743 456667788889999
Q ss_pred EEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-
Q 043172 312 ASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK- 390 (564)
Q Consensus 312 l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~- 390 (564)
+.|+|++.++++++.++.+++|++.+++.... +..+. ..+.++.|+|++.++++++.+|.|.+||+.+++.+..+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~-~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~ 175 (289)
T cd00200 99 VAFSPDGRILSSSSRDKTIKVWDVETGKCLTT--LRGHT-DWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTG 175 (289)
T ss_pred EEEcCCCCEEEEecCCCeEEEEECCCcEEEEE--eccCC-CcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEec
Confidence 99999988888888899999999997765433 33444 379999999999999888889999999999888888877
Q ss_pred ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCC
Q 043172 391 MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGG 470 (564)
Q Consensus 391 ~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~ 470 (564)
+...|.+++|+|+++.|++++.++.|++||++.++.+..+..+. ..+.+++|+|++.++++++.+|.|++|++...
T Consensus 176 ~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~--- 251 (289)
T cd00200 176 HTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHE-NGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG--- 251 (289)
T ss_pred CccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcC-CceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc---
Confidence 67799999999999999999999999999999888877764433 37899999999889998888999999999876
Q ss_pred cceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEE
Q 043172 471 KRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIH 512 (564)
Q Consensus 471 ~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwd 512 (564)
.++..+..|...|.+++|+|++.+|++++. ++.|++|+
T Consensus 252 --~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--d~~i~iw~ 289 (289)
T cd00200 252 --ECVQTLSGHTNSVTSLAWSPDGKRLASGSA--DGTIRIWD 289 (289)
T ss_pred --eeEEEccccCCcEEEEEECCCCCEEEEecC--CCeEEecC
Confidence 788888888999999999999999999998 99999995
No 55
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=5.9e-30 Score=239.25 Aligned_cols=285 Identities=15% Similarity=0.190 Sum_probs=244.3
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCce------eEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEE
Q 043172 260 SSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTK------IQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSL 333 (564)
Q Consensus 260 ~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~------~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iw 333 (564)
+..+-+.|..|||||++|++|+.||-|.+|+...+...+ ...+--+..+|.|+.||.|...|++|+.||.|++|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 355678999999999999999999999999986543221 22344467899999999999999999999999999
Q ss_pred ECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEeC
Q 043172 334 DLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGG 412 (564)
Q Consensus 334 dl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~ 412 (564)
.+.+|.+. ..+...+.+.|+|+.||.|+..+++++.|.++++--+++|+++..++ |.+.|+...|+++|..+++++.
T Consensus 291 ri~tG~Cl--RrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSs 368 (508)
T KOG0275|consen 291 RIETGQCL--RRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASS 368 (508)
T ss_pred EEecchHH--HHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecC
Confidence 99999984 34554455589999999999999999999999999999999999998 8999999999999999999999
Q ss_pred CCeEEEEECCCCceeEEEeecC-CcceEEEEECCC-CCEEEEEeCCCcEEEEeCCcccCCcceeeEEccc---cccceeE
Q 043172 413 DGQVYHWDLRTRTCIHRAVDEG-CINGTALCTSPD-GTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIEN---LTTKVDF 487 (564)
Q Consensus 413 dg~V~lwD~~~~~~~~~~~~~~-~~~i~~l~~sp~-g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~---~~~~I~~ 487 (564)
||+|++|+..+..|+.+|...+ ...+.++-.-|. ...++++....+|.|.++.. +.++++.. ..+...+
T Consensus 369 DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG------QvVrsfsSGkREgGdFi~ 442 (508)
T KOG0275|consen 369 DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG------QVVRSFSSGKREGGDFIN 442 (508)
T ss_pred CccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc------eEEeeeccCCccCCceEE
Confidence 9999999999999999887643 445667766665 45888899999999999886 66777643 3456677
Q ss_pred EEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEE
Q 043172 488 MKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYK 557 (564)
Q Consensus 488 l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~ 557 (564)
+..||.|.++++.+. |+.++.|.+.+|+.-..++.+. ..|..++-+|..+.||+-+.||.+.+|.
T Consensus 443 ~~lSpkGewiYcigE--D~vlYCF~~~sG~LE~tl~VhE---kdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 443 AILSPKGEWIYCIGE--DGVLYCFSVLSGKLERTLPVHE---KDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EEecCCCcEEEEEcc--CcEEEEEEeecCceeeeeeccc---ccccccccCcccchhhhhcccchhhhcC
Confidence 889999999999988 9999999999999888766554 6678899999999999999999999995
No 56
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=5.9e-29 Score=259.87 Aligned_cols=283 Identities=16% Similarity=0.235 Sum_probs=207.8
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEE-------------ee---CCCEEE-
Q 043172 260 SSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASF-------------LP---DGSQAI- 322 (564)
Q Consensus 260 ~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~f-------------sp---dg~~l~- 322 (564)
+|.+.|+++.||+||+|||+||.|+.|+||.+-.... ..+. ...-.++.+ ++ .++...
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~---~~~~--~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESER---MRVA--EGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccch---hccc--ccccchhhhhhhhccccCcccccccccccccccc
Confidence 8999999999999999999999999999999864211 1110 000011111 00 001110
Q ss_pred -EEeCCCeEEEEECCCC--ceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeeecCcEEEEE
Q 043172 323 -IAGRRKFFYSLDLVKA--KADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLKMNGTVRSLA 399 (564)
Q Consensus 323 -s~~~dg~i~iwdl~~~--~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~~~~~V~~l~ 399 (564)
.+..... .+.+.... ...++..+.||.. .|..+.||.++ +|++++.|.+|+||++...+++..|.|+.-|+|++
T Consensus 340 ~~~~~s~~-~~~p~~~f~f~ekP~~ef~GHt~-DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVa 416 (712)
T KOG0283|consen 340 RKGSQSPC-VLLPLKAFVFSEKPFCEFKGHTA-DILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVA 416 (712)
T ss_pred ccccCCcc-ccCCCccccccccchhhhhccch-hheecccccCC-eeEeccccccEEeecCCCcceeeEEecCCeeEEEE
Confidence 0111111 11111111 1123445677776 79999999754 88899999999999999999999999999999999
Q ss_pred Eec-CCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEc
Q 043172 400 FAD-DGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTI 478 (564)
Q Consensus 400 ~sp-dg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~ 478 (564)
|+| |.++|++|+-||.|+||++...+.+ .|.+-.. -|+++||.|+|++.++|+.+|.+++|+.... +.....
T Consensus 417 FnPvDDryFiSGSLD~KvRiWsI~d~~Vv-~W~Dl~~-lITAvcy~PdGk~avIGt~~G~C~fY~t~~l-----k~~~~~ 489 (712)
T KOG0283|consen 417 FNPVDDRYFISGSLDGKVRLWSISDKKVV-DWNDLRD-LITAVCYSPDGKGAVIGTFNGYCRFYDTEGL-----KLVSDF 489 (712)
T ss_pred ecccCCCcEeecccccceEEeecCcCeeE-eehhhhh-hheeEEeccCCceEEEEEeccEEEEEEccCC-----eEEEee
Confidence 999 8899999999999999999866654 4555443 5899999999999999999999999999876 444333
Q ss_pred c--------ccccceeEEEEcCCC-cEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcC
Q 043172 479 E--------NLTTKVDFMKFNNDA-QILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNA 549 (564)
Q Consensus 479 ~--------~~~~~I~~l~fspdg-~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~ 549 (564)
. .....|+.+.|.|.. ..|++.+. |..|||+|.....++..+......... ....|+.||++|++|++
T Consensus 490 ~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSn--DSrIRI~d~~~~~lv~KfKG~~n~~SQ-~~Asfs~Dgk~IVs~se 566 (712)
T KOG0283|consen 490 HIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSN--DSRIRIYDGRDKDLVHKFKGFRNTSSQ-ISASFSSDGKHIVSASE 566 (712)
T ss_pred eEeeccCccccCceeeeeEecCCCCCeEEEecC--CCceEEEeccchhhhhhhcccccCCcc-eeeeEccCCCEEEEeec
Confidence 2 112379999999754 34666676 999999999887777777655444333 45689999999999999
Q ss_pred CCeEEEEEcCC
Q 043172 550 AGKVFLYKLNH 560 (564)
Q Consensus 550 dG~V~lw~l~~ 560 (564)
|..|+||++..
T Consensus 567 Ds~VYiW~~~~ 577 (712)
T KOG0283|consen 567 DSWVYIWKNDS 577 (712)
T ss_pred CceEEEEeCCC
Confidence 99999999743
No 57
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.1e-27 Score=221.00 Aligned_cols=285 Identities=17% Similarity=0.213 Sum_probs=234.6
Q ss_pred CCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeC--CCeEEEEEC
Q 043172 258 DESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGR--RKFFYSLDL 335 (564)
Q Consensus 258 ~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~--dg~i~iwdl 335 (564)
...-.+.|++|.|+++|.+|++++.|.+|+|||.. ....+.++..+...|..++|....+.++.++. |.+|+..++
T Consensus 10 f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~--~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl 87 (311)
T KOG1446|consen 10 FRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSL--SGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSL 87 (311)
T ss_pred cccCCCceeEEEecCCCCEEEEecCCCeEEEEEcC--CCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEe
Confidence 33356799999999999999999999999999987 44578888888889999999988788887775 889999999
Q ss_pred CCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEEeCCCe
Q 043172 336 VKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSGGDGQ 415 (564)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s~dg~ 415 (564)
.+.+..+ -+.||.. .|..++.+|-+..+++++.|++|++||++..++...+...+ -..++|.|.|-++|++.....
T Consensus 88 ~dNkylR--YF~GH~~-~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~-~pi~AfDp~GLifA~~~~~~~ 163 (311)
T KOG1446|consen 88 HDNKYLR--YFPGHKK-RVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG-RPIAAFDPEGLIFALANGSEL 163 (311)
T ss_pred ecCceEE--EcCCCCc-eEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC-CcceeECCCCcEEEEecCCCe
Confidence 9999755 4788876 79999999999999999999999999999888877665333 345789999999999988779
Q ss_pred EEEEECCCC--ceeEEEee--cCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccce---eEE
Q 043172 416 VYHWDLRTR--TCIHRAVD--EGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKV---DFM 488 (564)
Q Consensus 416 V~lwD~~~~--~~~~~~~~--~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I---~~l 488 (564)
|++||++.- .+...+.. ......+.+.|||+|++|+.++..+.+.+.|.-.+ ..+.++..+...- -..
T Consensus 164 IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G-----~~~~tfs~~~~~~~~~~~a 238 (311)
T KOG1446|consen 164 IKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDG-----TVKSTFSGYPNAGNLPLSA 238 (311)
T ss_pred EEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCC-----cEeeeEeeccCCCCcceeE
Confidence 999999873 23333332 33456789999999999999999999999999887 6666665544322 578
Q ss_pred EEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q 043172 489 KFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLN 559 (564)
Q Consensus 489 ~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~ 559 (564)
.|+||++++++|+. ||+|.+|++.++..+..+... +.+++.++.|+|.-.+++++ +..+.+|=..
T Consensus 239 ~ftPds~Fvl~gs~--dg~i~vw~~~tg~~v~~~~~~--~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~ 303 (311)
T KOG1446|consen 239 TFTPDSKFVLSGSD--DGTIHVWNLETGKKVAVLRGP--NGGPVSCVRFNPRYAMFVSA--SSNLVFWLPD 303 (311)
T ss_pred EECCCCcEEEEecC--CCcEEEEEcCCCcEeeEecCC--CCCCccccccCCceeeeeec--CceEEEEecc
Confidence 89999999999998 999999999999988877654 45789999999976666655 4567778554
No 58
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.2e-28 Score=222.24 Aligned_cols=281 Identities=18% Similarity=0.191 Sum_probs=222.1
Q ss_pred eEEEEcCC-CCEEEEEe-------CCCcEEEEEec-CCCCceeEEEEeCCcCeEEEEEeeC-CCEEEEEeCCCeEEEEEC
Q 043172 266 NSVQFHRN-AQLLLVAG-------LDRRLRFFQID-GKRNTKIQSIFLEDCPVRKASFLPD-GSQAIIAGRRKFFYSLDL 335 (564)
Q Consensus 266 ~~l~fspd-g~~l~s~s-------~dg~I~lwd~~-~~~~~~~~~~~~~~~~I~~l~fspd-g~~l~s~~~dg~i~iwdl 335 (564)
+++.|||- .++||++. ..|++.|.++. .+......++. -...+..++|+++ .+.+++++.||.+++||+
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d-~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYD-TEDGLFDVAWSENHENQVIAASGDGSLRLFDL 90 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeee-cccceeEeeecCCCcceEEEEecCceEEEecc
Confidence 68899992 23343332 36888998885 33333333333 4567899999985 467888899999999995
Q ss_pred CCCceeeeccccccCCcceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEec-CCCEEEEEeC
Q 043172 336 VKAKADKIGPLVGREEKSLEFFEVSPD-SSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFAD-DGKQLLSSGG 412 (564)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~v~~~~~spd-g~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~sp-dg~~l~s~s~ 412 (564)
.... .++..+..|.. .|.++.|++- +..+++++.|++|++|+...++.+.++. |+..|...+|+| .++.+++++.
T Consensus 91 ~~~s-~Pi~~~kEH~~-EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sg 168 (311)
T KOG0277|consen 91 TMPS-KPIHKFKEHKR-EVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASG 168 (311)
T ss_pred CCCC-cchhHHHhhhh-heEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccC
Confidence 4332 34555666654 7999999984 5567788999999999999999999998 899999999999 6789999999
Q ss_pred CCeEEEEECCCCceeEEEeecCCcceEEEEECC-CCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEc
Q 043172 413 DGQVYHWDLRTRTCIHRAVDEGCINGTALCTSP-DGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFN 491 (564)
Q Consensus 413 dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp-~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fs 491 (564)
||++++||++.......+..+ ...+.++.|+. +.+.|++|+.|+.|++||++.. ..|+..+.+|.-.|..|+||
T Consensus 169 d~~l~lwdvr~~gk~~~i~ah-~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~----r~pl~eL~gh~~AVRkvk~S 243 (311)
T KOG0277|consen 169 DGTLRLWDVRSPGKFMSIEAH-NSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNL----RTPLFELNGHGLAVRKVKFS 243 (311)
T ss_pred CceEEEEEecCCCceeEEEec-cceeEeecccccCCcEEEecCCCceEEEEehhhc----cccceeecCCceEEEEEecC
Confidence 999999999875444445544 46889999986 4568999999999999999976 47899999999999999999
Q ss_pred CC-CcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeC-CCCEEEEEcCCCeEEEEEc
Q 043172 492 ND-AQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSP-GGGFMAVGNAAGKVFLYKL 558 (564)
Q Consensus 492 pd-g~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fsp-dg~~Lasgs~dG~V~lw~l 558 (564)
|. ..+||++|. |-++|||+........ .+...|...|..+.||+ ++.++|+++.|+.++||+-
T Consensus 244 ph~~~lLaSasY--DmT~riw~~~~~ds~~--e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 244 PHHASLLASASY--DMTVRIWDPERQDSAI--ETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cchhhHhhhccc--cceEEecccccchhhh--hhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 96 467888888 9999999997544322 23345668899999998 5779999999999999983
No 59
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.3e-28 Score=239.50 Aligned_cols=277 Identities=15% Similarity=0.223 Sum_probs=226.5
Q ss_pred CCCeeEEEEcCCCCE-EEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCce
Q 043172 262 TGPINSVQFHRNAQL-LLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKA 340 (564)
Q Consensus 262 ~~~V~~l~fspdg~~-l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~ 340 (564)
.++|++++|+|..++ +|+++ .-.+.||+..+. .....+......++++.|-.||+.|++|...|.|+|||+.+...
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~--~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~i 102 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTR--SVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVI 102 (487)
T ss_pred cCcceeEecCCCCCCceEEec-ccEEEEEecchh--hhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHH
Confidence 368999999996654 44443 456899977632 33444444567899999999999999999999999999666443
Q ss_pred eeeccccccCCcceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEecC-CCEEEEEeCCCeEE
Q 043172 341 DKIGPLVGREEKSLEFFEVSPDS-SVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADD-GKQLLSSGGDGQVY 417 (564)
Q Consensus 341 ~~~~~~~~~~~~~v~~~~~spdg-~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spd-g~~l~s~s~dg~V~ 417 (564)
+..+..|.. ++....|+|.+ ..+++|+.|+.+++||+.+......+. |...|.|.+|+|. +..+++||.||.|+
T Consensus 103 --LR~~~ah~a-pv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vr 179 (487)
T KOG0310|consen 103 --LRQLYAHQA-PVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVR 179 (487)
T ss_pred --HHHHhhccC-ceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEE
Confidence 344666665 89999999965 466777888999999999888654555 8999999999994 56899999999999
Q ss_pred EEECCCC-ceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcE
Q 043172 418 HWDLRTR-TCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQI 496 (564)
Q Consensus 418 lwD~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~ 496 (564)
+||++.. ..+..+ .++.+|.++.+-|.|..||+++.+ .|+|||+.++ .+.+....+|...|+|+.+..++..
T Consensus 180 l~DtR~~~~~v~el--nhg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G----~qll~~~~~H~KtVTcL~l~s~~~r 252 (487)
T KOG0310|consen 180 LWDTRSLTSRVVEL--NHGCPVESVLALPSGSLIASAGGN-SVKVWDLTTG----GQLLTSMFNHNKTVTCLRLASDSTR 252 (487)
T ss_pred EEEeccCCceeEEe--cCCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCC----ceehhhhhcccceEEEEEeecCCce
Confidence 9999987 444444 344578999999999999998765 8999999865 2666666779999999999999999
Q ss_pred EEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEE
Q 043172 497 LAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYK 557 (564)
Q Consensus 497 La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~ 557 (564)
|++++- |+.|++|++.+.+++..|... ++|.+++.+|+++.+++|-.+|.+.+=+
T Consensus 253 LlS~sL--D~~VKVfd~t~~Kvv~s~~~~----~pvLsiavs~dd~t~viGmsnGlv~~rr 307 (487)
T KOG0310|consen 253 LLSGSL--DRHVKVFDTTNYKVVHSWKYP----GPVLSIAVSPDDQTVVIGMSNGLVSIRR 307 (487)
T ss_pred Eeeccc--ccceEEEEccceEEEEeeecc----cceeeEEecCCCceEEEecccceeeeeh
Confidence 999999 999999999999999888655 7899999999999999999999887653
No 60
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=9.1e-28 Score=272.23 Aligned_cols=267 Identities=20% Similarity=0.234 Sum_probs=212.9
Q ss_pred CCcEEEEEecCCCCce---eEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCc----ee--eeccccccCCcc
Q 043172 283 DRRLRFFQIDGKRNTK---IQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAK----AD--KIGPLVGREEKS 353 (564)
Q Consensus 283 dg~I~lwd~~~~~~~~---~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~----~~--~~~~~~~~~~~~ 353 (564)
+|.+++|+........ ...+..|...|.+++|+|+|++|++|+.|+.|+||++.... .. ....+.++ ..
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~--~~ 534 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASR--SK 534 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEeccc--Cc
Confidence 5667788765322111 12244588999999999999999999999999999986421 10 11112222 36
Q ss_pred eEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEec-CCCEEEEEeCCCeEEEEECCCCceeEEE
Q 043172 354 LEFFEVSP-DSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFAD-DGKQLLSSGGDGQVYHWDLRTRTCIHRA 430 (564)
Q Consensus 354 v~~~~~sp-dg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~sp-dg~~l~s~s~dg~V~lwD~~~~~~~~~~ 430 (564)
+.+++|+| .+.+|++++.||.|++||+.+++.+..+. |.+.|++++|+| ++.+|++|+.||+|++||++++.++..+
T Consensus 535 v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~ 614 (793)
T PLN00181 535 LSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI 614 (793)
T ss_pred eeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE
Confidence 88999987 47899999999999999999999888887 889999999997 7899999999999999999999888777
Q ss_pred eecCCcceEEEEEC-CCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEE
Q 043172 431 VDEGCINGTALCTS-PDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLK 509 (564)
Q Consensus 431 ~~~~~~~i~~l~~s-p~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~ 509 (564)
... ..+.++.|+ ++|.+|++|+.||.|++||++.. ..++..+.+|...|+++.|. ++.+|++++. |+.|+
T Consensus 615 ~~~--~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~----~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~--D~~ik 685 (793)
T PLN00181 615 KTK--ANICCVQFPSESGRSLAFGSADHKVYYYDLRNP----KLPLCTMIGHSKTVSYVRFV-DSSTLVSSST--DNTLK 685 (793)
T ss_pred ecC--CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCC----CccceEecCCCCCEEEEEEe-CCCEEEEEEC--CCEEE
Confidence 643 367889985 57899999999999999999864 13677888999999999997 7889999998 99999
Q ss_pred EEEcCCCce---eccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCC
Q 043172 510 LIHIPSYNV---FSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNH 560 (564)
Q Consensus 510 lwdl~s~~~---~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~ 560 (564)
||++..... ...+....+|...+++++|+|++.+||+|+.||.|++|+...
T Consensus 686 iWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~ 739 (793)
T PLN00181 686 LWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAF 739 (793)
T ss_pred EEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCC
Confidence 999975321 111122345667889999999999999999999999999753
No 61
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.6e-28 Score=219.44 Aligned_cols=248 Identities=16% Similarity=0.198 Sum_probs=211.1
Q ss_pred eeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEE
Q 043172 298 KIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILL 377 (564)
Q Consensus 298 ~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~l 377 (564)
.+..+..+.++|.++.|+-+|+|.++++.|++|++|+...+.+.+. ..+|.. .|..++.+.|...|++++.|..|.+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~likt--YsghG~-EVlD~~~s~Dnskf~s~GgDk~v~v 85 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKT--YSGHGH-EVLDAALSSDNSKFASCGGDKAVQV 85 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeee--ecCCCc-eeeeccccccccccccCCCCceEEE
Confidence 4556778899999999999999999999999999999999988554 445443 6899999999999999999999999
Q ss_pred EECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCC--ceeEEEeecCCcceEEEEECCCCCEEEEEe
Q 043172 378 VSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTR--TCIHRAVDEGCINGTALCTSPDGTFFAAGS 454 (564)
Q Consensus 378 wd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~--~~~~~~~~~~~~~i~~l~~sp~g~~lasgs 454 (564)
||+.+|+.++.++ |.+.|+.+.|+.+...+++|+.|.+|++||.++. ++++.+.. ....+.++.++ +..|++||
T Consensus 86 wDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQilde-a~D~V~Si~v~--~heIvaGS 162 (307)
T KOG0316|consen 86 WDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDE-AKDGVSSIDVA--EHEIVAGS 162 (307)
T ss_pred EEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhh-hcCceeEEEec--ccEEEeec
Confidence 9999999999999 9999999999999999999999999999999875 34544443 33467777664 56899999
Q ss_pred CCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEE
Q 043172 455 DSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRC 534 (564)
Q Consensus 455 ~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~ 534 (564)
.||+++.||++.+ ... ......+|+++.|++||+.+++++- +++|||.|-.+|+.+..+..+..... -..
T Consensus 163 ~DGtvRtydiR~G-----~l~--sDy~g~pit~vs~s~d~nc~La~~l--~stlrLlDk~tGklL~sYkGhkn~ey-kld 232 (307)
T KOG0316|consen 163 VDGTVRTYDIRKG-----TLS--SDYFGHPITSVSFSKDGNCSLASSL--DSTLRLLDKETGKLLKSYKGHKNMEY-KLD 232 (307)
T ss_pred cCCcEEEEEeecc-----eee--hhhcCCcceeEEecCCCCEEEEeec--cceeeecccchhHHHHHhccccccee-eee
Confidence 9999999999986 433 3345679999999999999999998 99999999999999988776654433 345
Q ss_pred EEEeCCCCEEEEEcCCCeEEEEEcCCC
Q 043172 535 LDFSPGGGFMAVGNAAGKVFLYKLNHY 561 (564)
Q Consensus 535 l~fspdg~~Lasgs~dG~V~lw~l~~~ 561 (564)
.+++.....+++|++||.|++|+|-.-
T Consensus 233 c~l~qsdthV~sgSEDG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 233 CCLNQSDTHVFSGSEDGKVYFWDLVDE 259 (307)
T ss_pred eeecccceeEEeccCCceEEEEEeccc
Confidence 577777789999999999999998653
No 62
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.96 E-value=1e-27 Score=228.18 Aligned_cols=272 Identities=14% Similarity=0.114 Sum_probs=223.1
Q ss_pred cccCCCeEEcCCCccCCCeeeeeeeecccCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCc
Q 043172 228 LRTDEDLVVKSSAKLSPGLLEYSRLIDANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDC 307 (564)
Q Consensus 228 l~~~~~~~~~~~~~l~~~~~d~~rl~~~~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~ 307 (564)
+.++.+++++++.+=..-.|++..-.-+....+|...|+|+.|+.+|.+||||+.+|.|+||..+.+ .....+...-.
T Consensus 72 l~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg--~~~~~~~~e~~ 149 (399)
T KOG0296|consen 72 LHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTG--GEQWKLDQEVE 149 (399)
T ss_pred eCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccC--ceEEEeecccC
Confidence 4456677777766666677777765566667899999999999999999999999999999998854 34445555566
Q ss_pred CeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE
Q 043172 308 PVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIG 387 (564)
Q Consensus 308 ~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~ 387 (564)
.|.-+.|+|.+..|++|+.||.+.+|.+.++...++ +.||.. ++++-.|.|+|+.++++..||+|++|++.+++++.
T Consensus 150 dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv--~~Gh~~-~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~ 226 (399)
T KOG0296|consen 150 DIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKV--MSGHNS-PCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLH 226 (399)
T ss_pred ceEEEEecccccEEEeecCCCcEEEEECCCcceeeE--ecCCCC-CcccccccCCCceEEEEecCceEEEEecCCCceeE
Confidence 788899999999999999999999999999755443 677665 79999999999999999999999999999998877
Q ss_pred Eeee--cC--------------------------------------------------cEEEEEEec---CCCEEEEEeC
Q 043172 388 TLKM--NG--------------------------------------------------TVRSLAFAD---DGKQLLSSGG 412 (564)
Q Consensus 388 ~~~~--~~--------------------------------------------------~V~~l~~sp---dg~~l~s~s~ 412 (564)
.+.. .. .+.++.+.| .=.+.++|+.
T Consensus 227 ~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~v 306 (399)
T KOG0296|consen 227 KITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSV 306 (399)
T ss_pred EecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccc
Confidence 6540 00 011112212 2246778888
Q ss_pred CCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcC
Q 043172 413 DGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNN 492 (564)
Q Consensus 413 dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fsp 492 (564)
||+|.|||+...+..+... +..+|+.+.|-+ ..+|++++.+|.|+.||.+++ +.+.++.+|...|.+++++|
T Consensus 307 dG~i~iyD~a~~~~R~~c~--he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG-----~l~~~y~GH~~~Il~f~ls~ 378 (399)
T KOG0296|consen 307 DGTIAIYDLAASTLRHICE--HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTG-----QLKFTYTGHQMGILDFALSP 378 (399)
T ss_pred cceEEEEecccchhheecc--CCCceEEEEEcC-cchheeeccCceEEeeecccc-----ceEEEEecCchheeEEEEcC
Confidence 9999999998877665554 344689999998 779999999999999999998 99999999999999999999
Q ss_pred CCcEEEEEecCCCCeEEEEEcC
Q 043172 493 DAQILAICSTMKKNSLKLIHIP 514 (564)
Q Consensus 493 dg~~La~~s~~~d~~I~lwdl~ 514 (564)
++++++++|. |++.+||.++
T Consensus 379 ~~~~vvT~s~--D~~a~VF~v~ 398 (399)
T KOG0296|consen 379 QKRLVVTVSD--DNTALVFEVP 398 (399)
T ss_pred CCcEEEEecC--CCeEEEEecC
Confidence 9999999999 9999999875
No 63
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=4.8e-28 Score=234.70 Aligned_cols=278 Identities=18% Similarity=0.246 Sum_probs=236.8
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceee
Q 043172 263 GPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADK 342 (564)
Q Consensus 263 ~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~ 342 (564)
-.|+++...|..+.++|||.|..+.++|.. .+..+..+.+|...|+.+.|+|+...+++++.+..|+||.........
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~--s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~ 297 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKP--SNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPT 297 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecc--hhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcc
Confidence 468888888888899999999999999877 567888999999999999999999999999999999999988766432
Q ss_pred eccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeeec---CcEEEEEEecCCCEEEEEeCCCeEEEE
Q 043172 343 IGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLKMN---GTVRSLAFADDGKQLLSSGGDGQVYHW 419 (564)
Q Consensus 343 ~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~~~---~~V~~l~~spdg~~l~s~s~dg~V~lw 419 (564)
....|.. +|+.+..+|.|.||++++.+|++.+.|++++..+....+. -.+++++|+|||.+|.+|..||.|++|
T Consensus 298 --~~~~h~~-~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiw 374 (506)
T KOG0289|consen 298 --SSRPHEE-PVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIW 374 (506)
T ss_pred --ccccccc-cceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEE
Confidence 2344444 8999999999999999999999999999999998887764 358999999999999999999999999
Q ss_pred ECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEcccc-ccceeEEEEcCCCcEEE
Q 043172 420 DLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENL-TTKVDFMKFNNDAQILA 498 (564)
Q Consensus 420 D~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~-~~~I~~l~fspdg~~La 498 (564)
|+.++..+..|.. |...|..|+|+.+|.|||++++|+.|++||++.. +.++++... ...+.++.|.+.|++|+
T Consensus 375 dlks~~~~a~Fpg-ht~~vk~i~FsENGY~Lat~add~~V~lwDLRKl-----~n~kt~~l~~~~~v~s~~fD~SGt~L~ 448 (506)
T KOG0289|consen 375 DLKSQTNVAKFPG-HTGPVKAISFSENGYWLATAADDGSVKLWDLRKL-----KNFKTIQLDEKKEVNSLSFDQSGTYLG 448 (506)
T ss_pred EcCCccccccCCC-CCCceeEEEeccCceEEEEEecCCeEEEEEehhh-----cccceeeccccccceeEEEcCCCCeEE
Confidence 9999998888887 5558999999999999999999999999999987 555555432 23799999999999999
Q ss_pred EEecCCCCeEEEEEcC----CCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEc
Q 043172 499 ICSTMKKNSLKLIHIP----SYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKL 558 (564)
Q Consensus 499 ~~s~~~d~~I~lwdl~----s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l 558 (564)
+++. .|+||... +.+.+. ....|.+..+++.|....+++++++.|..++++.+
T Consensus 449 ~~g~----~l~Vy~~~k~~k~W~~~~---~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 449 IAGS----DLQVYICKKKTKSWTEIK---ELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eecc----eeEEEEEecccccceeee---hhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 9865 45555554 334433 33445578899999999999999999999988865
No 64
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=6.6e-28 Score=242.81 Aligned_cols=264 Identities=16% Similarity=0.206 Sum_probs=225.8
Q ss_pred ccCCCeEEcCCCccCCCeeeeeeeecccCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcC
Q 043172 229 RTDEDLVVKSSAKLSPGLLEYSRLIDANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCP 308 (564)
Q Consensus 229 ~~~~~~~~~~~~~l~~~~~d~~rl~~~~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~ 308 (564)
.++...+..+--.....+|+......++..+-..-||.+..|-+..+++++|+.|..|+||+.. +..++..+..|..-
T Consensus 22 HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnyn--t~ekV~~FeAH~Dy 99 (794)
T KOG0276|consen 22 HPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYN--TGEKVKTFEAHSDY 99 (794)
T ss_pred CCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecc--cceeeEEeeccccc
Confidence 3344444333233345677777666666666778899999999999999999999999999988 56799999999999
Q ss_pred eEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEE
Q 043172 309 VRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSP-DSSVIAFVGNEGYILLVSSKTKELIG 387 (564)
Q Consensus 309 I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~la~~~~dg~I~lwd~~t~~~~~ 387 (564)
|++++.+|...++++++.|-.|++||.+..- .....+.||.. .|.+++|+| |.+.+|+++-|++|++|.+.+..+..
T Consensus 100 IR~iavHPt~P~vLtsSDDm~iKlW~we~~w-a~~qtfeGH~H-yVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nf 177 (794)
T KOG0276|consen 100 IRSIAVHPTLPYVLTSSDDMTIKLWDWENEW-ACEQTFEGHEH-YVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNF 177 (794)
T ss_pred eeeeeecCCCCeEEecCCccEEEEeeccCce-eeeeEEcCcce-EEEEEEecCCCccceeeeeccccEEEEEcCCCCCce
Confidence 9999999999999999999999999998653 33455777765 799999999 67899999999999999999999999
Q ss_pred Eee-ecCcEEEEEEecCC--CEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeC
Q 043172 388 TLK-MNGTVRSLAFADDG--KQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNR 464 (564)
Q Consensus 388 ~~~-~~~~V~~l~~spdg--~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~ 464 (564)
++. |...|+|++|-+.| .+|++|+.|.+|++||..+..|++++.+|.. .|..++|+|.-.++++||.||+|+||+.
T Consensus 178 Tl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~-Nvs~v~fhp~lpiiisgsEDGTvriWhs 256 (794)
T KOG0276|consen 178 TLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN-NVSFVFFHPELPIIISGSEDGTVRIWNS 256 (794)
T ss_pred eeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc-cceEEEecCCCcEEEEecCCccEEEecC
Confidence 998 99999999998844 6999999999999999999999998886544 7899999999999999999999999999
Q ss_pred CcccCCcceeeEEccccccceeEEEEcCCCcEEEEEec
Q 043172 465 QEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICST 502 (564)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~ 502 (564)
.+. +...++.-....++|++-.+.+..+++|..
T Consensus 257 ~Ty-----~lE~tLn~gleRvW~I~~~k~~~~i~vG~D 289 (794)
T KOG0276|consen 257 KTY-----KLEKTLNYGLERVWCIAAHKGDGKIAVGFD 289 (794)
T ss_pred cce-----ehhhhhhcCCceEEEEeecCCCCeEEEecc
Confidence 887 777777766788999998888888888875
No 65
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=8.3e-27 Score=246.35 Aligned_cols=272 Identities=13% Similarity=0.148 Sum_probs=209.0
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCC-----------ceeEEEEeCCcCeEEEEEee-CCCEEEEEeCCC
Q 043172 261 STGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRN-----------TKIQSIFLEDCPVRKASFLP-DGSQAIIAGRRK 328 (564)
Q Consensus 261 h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~-----------~~~~~~~~~~~~I~~l~fsp-dg~~l~s~~~dg 328 (564)
|-..|....+++++..+++++.+.....|+..++.. .....+.+|.++|.+++|+| ++++|++++.|+
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 344566666777777777777777777776543210 11124678999999999999 889999999999
Q ss_pred eEEEEECCCCce-----eeeccccccCCcceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEe
Q 043172 329 FFYSLDLVKAKA-----DKIGPLVGREEKSLEFFEVSPDS-SVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFA 401 (564)
Q Consensus 329 ~i~iwdl~~~~~-----~~~~~~~~~~~~~v~~~~~spdg-~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~s 401 (564)
.|++||+.++.. ..+..+.+|.. .|.+++|+|++ ++|++++.|+.|+|||+.+++.+..+. |...|.+++|+
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~-~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~s 177 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTK-KVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWN 177 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCC-cEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEE
Confidence 999999986532 12334566654 79999999985 699999999999999999999888887 88899999999
Q ss_pred cCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEe----CCCcEEEEeCCcccCCcceeeEE
Q 043172 402 DDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGS----DSGIVNVYNRQEFLGGKRKPIKT 477 (564)
Q Consensus 402 pdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs----~dg~V~iwd~~~~~~~~~~~~~~ 477 (564)
|+|.+|++++.|+.|++||+++++.+..+..+....+..+.|.+++..+++++ .++.|++||++.. ..++..
T Consensus 178 pdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~----~~p~~~ 253 (493)
T PTZ00421 178 LDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKM----ASPYST 253 (493)
T ss_pred CCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCC----CCceeE
Confidence 99999999999999999999999988877766544455778888877777654 4789999999865 134444
Q ss_pred ccc-cccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCC
Q 043172 478 IEN-LTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPG 540 (564)
Q Consensus 478 ~~~-~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspd 540 (564)
... ....+....|++++.+|++++.. |+.|++|++.++..+..... ....++.+++|.|.
T Consensus 254 ~~~d~~~~~~~~~~d~d~~~L~lggkg-Dg~Iriwdl~~~~~~~~~~~--~s~~~~~g~~~~pk 314 (493)
T PTZ00421 254 VDLDQSSALFIPFFDEDTNLLYIGSKG-EGNIRCFELMNERLTFCSSY--SSVEPHKGLCMMPK 314 (493)
T ss_pred eccCCCCceEEEEEcCCCCEEEEEEeC-CCeEEEEEeeCCceEEEeec--cCCCCCcceEeccc
Confidence 432 23456667899999999988733 89999999998887654322 12345778888884
No 66
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.96 E-value=4e-29 Score=245.45 Aligned_cols=253 Identities=15% Similarity=0.254 Sum_probs=214.1
Q ss_pred ceeEEEEeCCcCeEEEEEee-CCCEEEEEeCCCeEEEEECCC-CceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCe
Q 043172 297 TKIQSIFLEDCPVRKASFLP-DGSQAIIAGRRKFFYSLDLVK-AKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGY 374 (564)
Q Consensus 297 ~~~~~~~~~~~~I~~l~fsp-dg~~l~s~~~dg~i~iwdl~~-~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~ 374 (564)
..+.++.+|...|+++.|.| .+.+|++++.|+.|+||++-. +.+ +.++.+|.. +|..++|+++|..+++++.|+.
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~--lrtf~gH~k-~Vrd~~~s~~g~~fLS~sfD~~ 281 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRC--LRTFKGHRK-PVRDASFNNCGTSFLSASFDRF 281 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcce--ehhhhcchh-hhhhhhccccCCeeeeeeccee
Confidence 35677889999999999999 889999999999999999987 444 556777765 8999999999999999999999
Q ss_pred EEEEECCCCcEEEEeeecCcEEEEEEecCC-CEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEE
Q 043172 375 ILLVSSKTKELIGTLKMNGTVRSLAFADDG-KQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAG 453 (564)
Q Consensus 375 I~lwd~~t~~~~~~~~~~~~V~~l~~spdg-~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasg 453 (564)
|++||+++|+++..+.....++|+.|+|++ +.+++|+.|+.|+.||+++++.++.+..+ -..|..+.|-++|+++++.
T Consensus 282 lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~h-Lg~i~~i~F~~~g~rFiss 360 (503)
T KOG0282|consen 282 LKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRH-LGAILDITFVDEGRRFISS 360 (503)
T ss_pred eeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhh-hhheeeeEEccCCceEeee
Confidence 999999999999999988999999999988 89999999999999999999988776644 3478999999999999999
Q ss_pred eCCCcEEEEeCCcccCCcceeeEEc-cccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCcee---ccCCCCCCCC
Q 043172 454 SDSGIVNVYNRQEFLGGKRKPIKTI-ENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVF---SNWPPANRNL 529 (564)
Q Consensus 454 s~dg~V~iwd~~~~~~~~~~~~~~~-~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~---~~~~~~~~~~ 529 (564)
+.+++++||+.+.. -+++.+ ........+|..+|++.++++-+. ++.|.++.+...-.. ..+..+. -.
T Consensus 361 SDdks~riWe~~~~-----v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~--dN~i~ifs~~~~~r~nkkK~feGh~-va 432 (503)
T KOG0282|consen 361 SDDKSVRIWENRIP-----VPIKNIADPEMHTMPCLTLHPNGKWFAAQSM--DNYIAIFSTVPPFRLNKKKRFEGHS-VA 432 (503)
T ss_pred ccCccEEEEEcCCC-----ccchhhcchhhccCcceecCCCCCeehhhcc--CceEEEEecccccccCHhhhhccee-cc
Confidence 99999999999876 444433 233456678999999999999988 999999987532222 2222222 23
Q ss_pred CCcEEEEEeCCCCEEEEEcCCCeEEEEEcCCC
Q 043172 530 QYPRCLDFSPGGGFMAVGNAAGKVFLYKLNHY 561 (564)
Q Consensus 530 ~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~~ 561 (564)
|.-..+.|||||++|++|+.+|.+.+|+.++-
T Consensus 433 Gys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~ 464 (503)
T KOG0282|consen 433 GYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTT 464 (503)
T ss_pred CceeeEEEcCCCCeEEeecCCccEEEeechhh
Confidence 66788999999999999999999999998764
No 67
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.4e-26 Score=206.96 Aligned_cols=288 Identities=16% Similarity=0.260 Sum_probs=231.7
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEEecC----------CCCc---eeEEEEeCCcCeEEEEEeeCCCEEEEEeCCC
Q 043172 262 TGPINSVQFHRNAQLLLVAGLDRRLRFFQIDG----------KRNT---KIQSIFLEDCPVRKASFLPDGSQAIIAGRRK 328 (564)
Q Consensus 262 ~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~----------~~~~---~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg 328 (564)
...|.+++|||.|.+.++|+..++++|-.... ...+ .......|.+.|+|.+|+|+|..|++|+.|+
T Consensus 32 sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk 111 (350)
T KOG0641|consen 32 SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDK 111 (350)
T ss_pred hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCc
Confidence 45899999999999999999999999875421 0111 1223456889999999999999999999999
Q ss_pred eEEEEECCCCceeee---ccccccCCcceEEEEEcCC----CCEEEEEeC-CCeEEEEECCCCcEEEEee-ecCcEEEEE
Q 043172 329 FFYSLDLVKAKADKI---GPLVGREEKSLEFFEVSPD----SSVIAFVGN-EGYILLVSSKTKELIGTLK-MNGTVRSLA 399 (564)
Q Consensus 329 ~i~iwdl~~~~~~~~---~~~~~~~~~~v~~~~~spd----g~~la~~~~-dg~I~lwd~~t~~~~~~~~-~~~~V~~l~ 399 (564)
+|++..++...+..+ ..+..|. ..|..++|-.+ |.+|++++. |..|++-|..+|+..+.+. |.+.|.++-
T Consensus 112 ~ik~l~fn~dt~~~~g~dle~nmhd-gtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilaly 190 (350)
T KOG0641|consen 112 TIKVLPFNADTCNATGHDLEFNMHD-GTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALY 190 (350)
T ss_pred eEEEEecccccccccCcceeeeecC-CceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEE
Confidence 999987775543222 1233333 47999999643 567777664 6788888999999998888 889888873
Q ss_pred EecCCCEEEEEeCCCeEEEEECCCCceeEEEeec---C---CcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcce
Q 043172 400 FADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDE---G---CINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRK 473 (564)
Q Consensus 400 ~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~---~---~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~ 473 (564)
+-++-.+++|+.|.+|++||++-..++..+... + +..+.++++.|.|++|++|-.|....+||++.+ +
T Consensus 191 -swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~-----r 264 (350)
T KOG0641|consen 191 -SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGG-----R 264 (350)
T ss_pred -EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCC-----c
Confidence 335889999999999999999999888766431 1 246889999999999999999999999999998 9
Q ss_pred eeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCC--CCCCCCCcEEEEEeCCCCEEEEEcCCC
Q 043172 474 PIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPP--ANRNLQYPRCLDFSPGGGFMAVGNAAG 551 (564)
Q Consensus 474 ~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~--~~~~~~~V~~l~fspdg~~Lasgs~dG 551 (564)
++..+..|...|.++.|+|...||+++|. |..|++-|+.. .....++. ...|...+..+.|+|..--+++.+.|.
T Consensus 265 ~iq~f~phsadir~vrfsp~a~yllt~sy--d~~ikltdlqg-dla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadk 341 (350)
T KOG0641|consen 265 MIQRFHPHSADIRCVRFSPGAHYLLTCSY--DMKIKLTDLQG-DLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADK 341 (350)
T ss_pred eeeeeCCCccceeEEEeCCCceEEEEecc--cceEEEeeccc-chhhcCceEEEEeccCceEEEEecCccceeeeccCcc
Confidence 99999999999999999999999999999 99999999864 22222222 234556778889999988899999999
Q ss_pred eEEEEEcC
Q 043172 552 KVFLYKLN 559 (564)
Q Consensus 552 ~V~lw~l~ 559 (564)
++.+|-++
T Consensus 342 t~tlwa~~ 349 (350)
T KOG0641|consen 342 TATLWALN 349 (350)
T ss_pred eEEEeccC
Confidence 99999875
No 68
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=9.9e-27 Score=218.41 Aligned_cols=252 Identities=18% Similarity=0.282 Sum_probs=211.8
Q ss_pred EEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeC--CCeEEEE
Q 043172 301 SIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGN--EGYILLV 378 (564)
Q Consensus 301 ~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~--dg~I~lw 378 (564)
.+....+.|.++.|+++|..+++++.|..+++||..+++..+. +..++. .+..++|....+.++.++. |.+|+..
T Consensus 9 ~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~t--i~skky-G~~~~~Fth~~~~~i~sStk~d~tIryL 85 (311)
T KOG1446|consen 9 VFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKT--INSKKY-GVDLACFTHHSNTVIHSSTKEDDTIRYL 85 (311)
T ss_pred ccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeE--eecccc-cccEEEEecCCceEEEccCCCCCceEEE
Confidence 3444567899999999999999999999999999999987554 433333 5777888777777766666 7899999
Q ss_pred ECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCC
Q 043172 379 SSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSG 457 (564)
Q Consensus 379 d~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg 457 (564)
++.+.+.++.+. |...|++++.+|-+..+++++.|.+|++||++..+|...+...+. ..++|+|.|-++|++....
T Consensus 86 sl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~---pi~AfDp~GLifA~~~~~~ 162 (311)
T KOG1446|consen 86 SLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR---PIAAFDPEGLIFALANGSE 162 (311)
T ss_pred EeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC---cceeECCCCcEEEEecCCC
Confidence 999999999999 999999999999999999999999999999999998877765543 3578999999999999988
Q ss_pred cEEEEeCCcccCCcceeeEEcc---ccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEE
Q 043172 458 IVNVYNRQEFLGGKRKPIKTIE---NLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRC 534 (564)
Q Consensus 458 ~V~iwd~~~~~~~~~~~~~~~~---~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~ 534 (564)
.|++||++... ..|..++. +.....+.|.|||||++|+.++. .+.+++.|.-+|.+...+..........-.
T Consensus 163 ~IkLyD~Rs~d---kgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~--~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~ 237 (311)
T KOG1446|consen 163 LIKLYDLRSFD---KGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN--ASFIYLLDAFDGTVKSTFSGYPNAGNLPLS 237 (311)
T ss_pred eEEEEEecccC---CCCceeEccCCCCccceeeeEEcCCCCEEEEEeC--CCcEEEEEccCCcEeeeEeeccCCCCccee
Confidence 99999999752 23444443 44678899999999999999998 899999999999988877666544444467
Q ss_pred EEEeCCCCEEEEEcCCCeEEEEEcCCCCC
Q 043172 535 LDFSPGGGFMAVGNAAGKVFLYKLNHYHH 563 (564)
Q Consensus 535 l~fspdg~~Lasgs~dG~V~lw~l~~~~~ 563 (564)
.+|+|||+++++|+.||+|++|++++++.
T Consensus 238 a~ftPds~Fvl~gs~dg~i~vw~~~tg~~ 266 (311)
T KOG1446|consen 238 ATFTPDSKFVLSGSDDGTIHVWNLETGKK 266 (311)
T ss_pred EEECCCCcEEEEecCCCcEEEEEcCCCcE
Confidence 89999999999999999999999988764
No 69
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=7e-29 Score=234.06 Aligned_cols=268 Identities=14% Similarity=0.223 Sum_probs=222.2
Q ss_pred eEEcCCCccCCCeeeeeeeecccCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEE
Q 043172 234 LVVKSSAKLSPGLLEYSRLIDANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKAS 313 (564)
Q Consensus 234 ~~~~~~~~l~~~~~d~~rl~~~~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~ 313 (564)
.++++.++-...+||.+.+.......||++.|.|+.|. .+.+++|+.|.+|++||++ ++.++.++.+|...|..+.
T Consensus 209 kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~--tge~l~tlihHceaVLhlr 284 (499)
T KOG0281|consen 209 KIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVN--TGEPLNTLIHHCEAVLHLR 284 (499)
T ss_pred hhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEecc--CCchhhHHhhhcceeEEEE
Confidence 33455566677788888888888889999999999996 4599999999999999998 4567888888999999999
Q ss_pred EeeCCCEEEEEeCCCeEEEEECCCCceeeec-cccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-e
Q 043172 314 FLPDGSQAIIAGRRKFFYSLDLVKAKADKIG-PLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-M 391 (564)
Q Consensus 314 fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~-~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~ 391 (564)
|+ ..++++++.|.++.+||+.......+. -+.||.. .|+.+.|+ .+++++++.|.+|++|++.++++++++. |
T Consensus 285 f~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrA-aVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gH 359 (499)
T KOG0281|consen 285 FS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA-AVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGH 359 (499)
T ss_pred Ee--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhh-heeeeccc--cceEEEecCCceEEEEeccceeeehhhhcc
Confidence 97 459999999999999999876533322 3556665 78888886 5699999999999999999999999998 8
Q ss_pred cCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccC--
Q 043172 392 NGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLG-- 469 (564)
Q Consensus 392 ~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~-- 469 (564)
...|.|+.+. ++++++|+.|.+|++||+..|.|+..+.++.. -|.++.| +.+.+++|..||+|+|||+.....
T Consensus 360 kRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe-LvRciRF--d~krIVSGaYDGkikvWdl~aaldpr 434 (499)
T KOG0281|consen 360 KRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEE-LVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPR 434 (499)
T ss_pred cccceehhcc--CeEEEecCCCceEEEEeccccHHHHHHhchHH-hhhheee--cCceeeeccccceEEEEecccccCCc
Confidence 8899999885 89999999999999999999999988876654 5788888 456899999999999999987631
Q ss_pred --CcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCcee
Q 043172 470 --GKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVF 519 (564)
Q Consensus 470 --~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~ 519 (564)
...-++.++..|.+.|..+.| |...+++++. +.+|-|||+-.+..-
T Consensus 435 a~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssH--ddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 435 APASTLCLRTLVEHSGRVFRLQF--DEFQIISSSH--DDTILIWDFLNGPPS 482 (499)
T ss_pred ccccchHHHhhhhccceeEEEee--cceEEEeccC--CCeEEEEEcCCCCcc
Confidence 122355666778999999999 4556777777 899999999776543
No 70
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.96 E-value=5.8e-27 Score=217.87 Aligned_cols=270 Identities=19% Similarity=0.217 Sum_probs=228.1
Q ss_pred cccCCCeEEcCCCccCCCeee-eeeeecccCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCC
Q 043172 228 LRTDEDLVVKSSAKLSPGLLE-YSRLIDANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLED 306 (564)
Q Consensus 228 l~~~~~~~~~~~~~l~~~~~d-~~rl~~~~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~ 306 (564)
+.+.+.++++++.+-..-.|+ ..-+.+.....+|.+.|..+.|.++++.|+++|.|.+|+.||+. +++.+....+|.
T Consensus 55 F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~--tG~~~rk~k~h~ 132 (338)
T KOG0265|consen 55 FHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAE--TGKRIRKHKGHT 132 (338)
T ss_pred ECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecc--cceeeehhcccc
Confidence 455667777776666667777 34566666778999999999999999999999999999999998 455788888999
Q ss_pred cCeEEEEEeeCCC-EEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE
Q 043172 307 CPVRKASFLPDGS-QAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKEL 385 (564)
Q Consensus 307 ~~I~~l~fspdg~-~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~ 385 (564)
..|.++.-+.-|. .+.+++.|+++++||+++....+. +... ..++++.|...+..+.+|+-|+.|++||++.+..
T Consensus 133 ~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t--~~~k--yqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~ 208 (338)
T KOG0265|consen 133 SFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKT--FENK--YQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDG 208 (338)
T ss_pred ceeeecCccccCCeEEEecCCCceEEEEeecccchhhc--cccc--eeEEEEEecccccceeeccccCceeeeccccCcc
Confidence 9999988554454 455677899999999998776443 2221 2589999999999999999999999999999999
Q ss_pred EEEee-ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCC----CceeEEEeec-C--CcceEEEEECCCCCEEEEEeCCC
Q 043172 386 IGTLK-MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRT----RTCIHRAVDE-G--CINGTALCTSPDGTFFAAGSDSG 457 (564)
Q Consensus 386 ~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~----~~~~~~~~~~-~--~~~i~~l~~sp~g~~lasgs~dg 457 (564)
..++. |..+|+.+..+|+|.++++-+.|.+|++||++- .+|+..+..+ + ......++|+|+++.+.+|+.|.
T Consensus 209 ~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr 288 (338)
T KOG0265|consen 209 LYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADR 288 (338)
T ss_pred eEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccc
Confidence 99998 899999999999999999999999999999985 3456656543 2 22346788999999999999999
Q ss_pred cEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEE
Q 043172 458 IVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKL 510 (564)
Q Consensus 458 ~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~l 510 (564)
.+++||.... ..+..+.+|.+.|.++.|+|...+|.+++. |.+|++
T Consensus 289 ~vyvwd~~~r-----~~lyklpGh~gsvn~~~Fhp~e~iils~~s--dk~i~l 334 (338)
T KOG0265|consen 289 FVYVWDTTSR-----RILYKLPGHYGSVNEVDFHPTEPIILSCSS--DKTIYL 334 (338)
T ss_pred eEEEeecccc-----cEEEEcCCcceeEEEeeecCCCcEEEEecc--CceeEe
Confidence 9999999886 889999999999999999999999999998 888876
No 71
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=8.8e-27 Score=216.78 Aligned_cols=280 Identities=14% Similarity=0.166 Sum_probs=222.7
Q ss_pred cccCCCCCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEE
Q 043172 254 DANADESSTGPINSVQFHR-NAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYS 332 (564)
Q Consensus 254 ~~~~~~~h~~~V~~l~fsp-dg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~i 332 (564)
+.....+....|.+|+||| ...+|+.+|.|++|++|++.......-.....|.+||.+++|+.+|..+++|+.|+.+++
T Consensus 19 d~ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~ 98 (347)
T KOG0647|consen 19 DYEVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKL 98 (347)
T ss_pred ceecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEE
Confidence 3334456788999999999 555667888999999999975322222456678999999999999999999999999999
Q ss_pred EECCCCceeeeccccccCCcceEEEEEcCCCC--EEEEEeCCCeEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEE
Q 043172 333 LDLVKAKADKIGPLVGREEKSLEFFEVSPDSS--VIAFVGNEGYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSS 410 (564)
Q Consensus 333 wdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~--~la~~~~dg~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~ 410 (564)
||+.+++..+ +..|. .+|..+.|-+... .|++|+.|.+|+.||++...++.++.....+.++..- ...++++
T Consensus 99 wDL~S~Q~~~---v~~Hd-~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~--~pm~vVa 172 (347)
T KOG0647|consen 99 WDLASGQVSQ---VAAHD-APVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVL--YPMAVVA 172 (347)
T ss_pred EEccCCCeee---eeecc-cceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhcc--CceeEEE
Confidence 9999998654 33444 4899999987665 8999999999999999999999999999999988765 3478888
Q ss_pred eCCCeEEEEECCCCcee-EEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEcccc--------
Q 043172 411 GGDGQVYHWDLRTRTCI-HRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENL-------- 481 (564)
Q Consensus 411 s~dg~V~lwD~~~~~~~-~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~-------- 481 (564)
..+..|.+|+++.+... ......-...+.||+..++....|.|+-.|.+.|..+.... ++.-.+|+-|
T Consensus 173 ta~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~---~~~nFtFkCHR~~~~~~~ 249 (347)
T KOG0647|consen 173 TAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPN---PKDNFTFKCHRSTNSVND 249 (347)
T ss_pred ecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCC---ccCceeEEEeccCCCCCC
Confidence 88999999999765433 23333344567889888888888999999999999998741 1222233333
Q ss_pred -ccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEE
Q 043172 482 -TTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVG 547 (564)
Q Consensus 482 -~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasg 547 (564)
.-.|++|+|+|.-..|++++. ||++.+||-.....+... ..+..+|++.+|+.+|.++|.+
T Consensus 250 ~VYaVNsi~FhP~hgtlvTaGs--DGtf~FWDkdar~kLk~s---~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 250 DVYAVNSIAFHPVHGTLVTAGS--DGTFSFWDKDARTKLKTS---ETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred ceEEecceEeecccceEEEecC--CceEEEecchhhhhhhcc---CcCCCccceeEecCCCCEEEEE
Confidence 246888999999999999988 999999998876666544 4455889999999999998754
No 72
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=6.3e-27 Score=239.03 Aligned_cols=279 Identities=19% Similarity=0.257 Sum_probs=230.6
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeec
Q 043172 265 INSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIG 344 (564)
Q Consensus 265 V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~ 344 (564)
.+-+.|+ ..+.|++|. ...|++|+........+ ...+...|+++.|+++|.+|++|..+|.|.|||..+.+. +.
T Consensus 180 ~nlldWs-s~n~laVal-g~~vylW~~~s~~v~~l--~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~--~~ 253 (484)
T KOG0305|consen 180 LNLLDWS-SANVLAVAL-GQSVYLWSASSGSVTEL--CSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK--TR 253 (484)
T ss_pred hhHhhcc-cCCeEEEEe-cceEEEEecCCCceEEe--EecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccc--cc
Confidence 3446677 445666664 56799998875542233 333478999999999999999999999999999987765 44
Q ss_pred cccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE-ee-ecCcEEEEEEecCCCEEEEEeCCCeEEEEECC
Q 043172 345 PLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGT-LK-MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLR 422 (564)
Q Consensus 345 ~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~-~~-~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~ 422 (564)
.+.+++...|.+++|+ +..+.+|+.++.|..+|++..+.... +. |...|..+.|++++++|++|+.|+.|.|||..
T Consensus 254 ~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~ 331 (484)
T KOG0305|consen 254 TLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGL 331 (484)
T ss_pred cccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCC
Confidence 5666455579999998 77899999999999999998876655 55 88999999999999999999999999999998
Q ss_pred CCceeEEEeecCCcceEEEEECCC-CCEEEEEe--CCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEE
Q 043172 423 TRTCIHRAVDEGCINGTALCTSPD-GTFFAAGS--DSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAI 499 (564)
Q Consensus 423 ~~~~~~~~~~~~~~~i~~l~~sp~-g~~lasgs--~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~ 499 (564)
...++..+..+ ...|..++|+|- ...||+|+ .|+.|++||..++ ..+..+. ....|.+|.|++..+-|++
T Consensus 332 ~~~p~~~~~~H-~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g-----~~i~~vd-tgsQVcsL~Wsk~~kEi~s 404 (484)
T KOG0305|consen 332 SPEPKFTFTEH-TAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG-----ARIDSVD-TGSQVCSLIWSKKYKELLS 404 (484)
T ss_pred CccccEEEecc-ceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC-----cEecccc-cCCceeeEEEcCCCCEEEE
Confidence 77777776654 457899999996 45888874 6899999999987 7777766 4678999999999988888
Q ss_pred EecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCCC
Q 043172 500 CSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNHY 561 (564)
Q Consensus 500 ~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~~ 561 (564)
+.+..++.|.||..++...... ..+|..+|..+++||||.++++|+.|.++++|++-..
T Consensus 405 thG~s~n~i~lw~~ps~~~~~~---l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 405 THGYSENQITLWKYPSMKLVAE---LLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred ecCCCCCcEEEEeccccceeee---ecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 8777789999999999777664 4566789999999999999999999999999998553
No 73
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=5.9e-26 Score=241.04 Aligned_cols=251 Identities=10% Similarity=0.048 Sum_probs=193.6
Q ss_pred EeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeC-CCEEEEEeCCCeEEEEECCCCcee------eeccccccCCc
Q 043172 280 AGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPD-GSQAIIAGRRKFFYSLDLVKAKAD------KIGPLVGREEK 352 (564)
Q Consensus 280 ~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspd-g~~l~s~~~dg~i~iwdl~~~~~~------~~~~~~~~~~~ 352 (564)
||.++.|++|+... ...+..+.+|..+|.+++|+|+ +++|++|+.|+.|+|||+.++... .+..+.+|..
T Consensus 50 GG~~gvI~L~~~~r--~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~- 126 (568)
T PTZ00420 50 GGLIGAIRLENQMR--KPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKK- 126 (568)
T ss_pred CCceeEEEeeecCC--CceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCC-
Confidence 56788999998763 4577888999999999999996 789999999999999999864310 1223455554
Q ss_pred ceEEEEEcCCCCE-EEEEeCCCeEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEe
Q 043172 353 SLEFFEVSPDSSV-IAFVGNEGYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAV 431 (564)
Q Consensus 353 ~v~~~~~spdg~~-la~~~~dg~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~ 431 (564)
.|.+++|+|++.. |++++.|+.|+|||+++++.+..+.+...|.+++|+|+|.+|++++.|+.|++||++++..+..+.
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~ 206 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFH 206 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence 7999999999876 468899999999999999988888778899999999999999999999999999999999888877
Q ss_pred ecCCcc----eEEEEECCCCCEEEEEeCCC----cEEEEeCCcccCCcceeeEEc--cccccceeEEEEcCCCcEEEEEe
Q 043172 432 DEGCIN----GTALCTSPDGTFFAAGSDSG----IVNVYNRQEFLGGKRKPIKTI--ENLTTKVDFMKFNNDAQILAICS 501 (564)
Q Consensus 432 ~~~~~~----i~~l~~sp~g~~lasgs~dg----~V~iwd~~~~~~~~~~~~~~~--~~~~~~I~~l~fspdg~~La~~s 501 (564)
.+.... +....|++++.+|++++.++ .|+|||++.. ..++..+ ..+.+.+......++|.++++|+
T Consensus 207 gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~----~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGk 282 (568)
T PTZ00420 207 IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNT----TSALVTMSIDNASAPLIPHYDESTGLIYLIGK 282 (568)
T ss_pred cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCC----CCceEEEEecCCccceEEeeeCCCCCEEEEEE
Confidence 654321 12234568888999887664 7999999863 1455544 33334444444456789999998
Q ss_pred cCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCC
Q 043172 502 TMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGG 541 (564)
Q Consensus 502 ~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg 541 (564)
+ |+.|++|++..+.... +... .+..++.+++|.|..
T Consensus 283 G--D~tIr~~e~~~~~~~~-l~~~-~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 283 G--DGNCRYYQHSLGSIRK-VNEY-KSCSPFRSFGFLPKQ 318 (568)
T ss_pred C--CCeEEEEEccCCcEEe-eccc-ccCCCccceEEcccc
Confidence 8 9999999998764322 2222 244678889999964
No 74
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=1.8e-27 Score=235.02 Aligned_cols=271 Identities=20% Similarity=0.277 Sum_probs=212.0
Q ss_pred CCCccCCCeeeee-eeecccCCC-----------CCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCce-------
Q 043172 238 SSAKLSPGLLEYS-RLIDANADE-----------SSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTK------- 298 (564)
Q Consensus 238 ~~~~l~~~~~d~~-rl~~~~~~~-----------~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~------- 298 (564)
.+.++..+.+|+. ++|+.+... .-...|++++|+|.|..|++.+....++|+|-++.....
T Consensus 178 ~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQY 257 (641)
T KOG0772|consen 178 SGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQY 257 (641)
T ss_pred CCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchh
Confidence 5678888888876 888876432 135689999999999999888888999999987643111
Q ss_pred ---eEEEEeCCcCeEEEEEeeCC-CEEEEEeCCCeEEEEECCCCcee-eec--cccccCCcceEEEEEcCCCCEEEEEeC
Q 043172 299 ---IQSIFLEDCPVRKASFLPDG-SQAIIAGRRKFFYSLDLVKAKAD-KIG--PLVGREEKSLEFFEVSPDSSVIAFVGN 371 (564)
Q Consensus 299 ---~~~~~~~~~~I~~l~fspdg-~~l~s~~~dg~i~iwdl~~~~~~-~~~--~~~~~~~~~v~~~~~spdg~~la~~~~ 371 (564)
+....+|...++|.+|+|.. ..+++++.||+++||+++..+.. ++. ...+...-+++.++|+|+|+.||+|+.
T Consensus 258 I~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~ 337 (641)
T KOG0772|consen 258 IRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCL 337 (641)
T ss_pred hhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhccc
Confidence 22346788899999999954 67889999999999999875421 111 122222346889999999999999999
Q ss_pred CCeEEEEECCCCcE--EEEee--ecC--cEEEEEEecCCCEEEEEeCCCeEEEEECCCC-ceeEEEee-cCCcceEEEEE
Q 043172 372 EGYILLVSSKTKEL--IGTLK--MNG--TVRSLAFADDGKQLLSSGGDGQVYHWDLRTR-TCIHRAVD-EGCINGTALCT 443 (564)
Q Consensus 372 dg~I~lwd~~t~~~--~~~~~--~~~--~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~-~~~~~~~~-~~~~~i~~l~~ 443 (564)
||.|.+|+..+... ...++ |.. .|+||.|+++|++|++-+.|+++++||++.. +++..+.. ......+.++|
T Consensus 338 DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~F 417 (641)
T KOG0772|consen 338 DGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCF 417 (641)
T ss_pred CCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCcccc
Confidence 99999999754332 22233 655 8999999999999999999999999999974 45554443 34456688999
Q ss_pred CCCCCEEEEEeC------CCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCC
Q 043172 444 SPDGTFFAAGSD------SGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPS 515 (564)
Q Consensus 444 sp~g~~lasgs~------dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s 515 (564)
||+.++|++|+. .|.+.+||..+. ..+..+.-.+..|..+.|+|-=+.|+++++ ||.+++|--++
T Consensus 418 SPd~kli~TGtS~~~~~~~g~L~f~d~~t~-----d~v~ki~i~~aSvv~~~WhpkLNQi~~gsg--dG~~~vyYdp~ 488 (641)
T KOG0772|consen 418 SPDDKLILTGTSAPNGMTAGTLFFFDRMTL-----DTVYKIDISTASVVRCLWHPKLNQIFAGSG--DGTAHVYYDPN 488 (641)
T ss_pred CCCceEEEecccccCCCCCceEEEEeccce-----eeEEEecCCCceEEEEeecchhhheeeecC--CCceEEEECcc
Confidence 999999999864 578999999987 888888877899999999998777888888 89999886543
No 75
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.96 E-value=1.2e-27 Score=235.21 Aligned_cols=284 Identities=18% Similarity=0.244 Sum_probs=239.3
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCC-ceeEEEE--eCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECC
Q 043172 260 SSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRN-TKIQSIF--LEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLV 336 (564)
Q Consensus 260 ~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~-~~~~~~~--~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~ 336 (564)
.|...|.++.+|...++++||| -|.|+|||+....+ .++..+. .....|+++.++|||+.|++||.-.++.|||+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred ccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 4888999999999999999998 57799999975432 2233332 245679999999999999999999999999998
Q ss_pred CCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEeCCCe
Q 043172 337 KAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQ 415 (564)
Q Consensus 337 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~ 415 (564)
.........+.... ..+..++.+||.++.++++.||.|.|||+.+...++.|. |...+.||.++++|..|.+|+-|.+
T Consensus 496 apTprikaeltssa-paCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDnt 574 (705)
T KOG0639|consen 496 APTPRIKAELTSSA-PACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNT 574 (705)
T ss_pred CCCcchhhhcCCcc-hhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccc
Confidence 77643222233222 257789999999999999999999999999999999999 9999999999999999999999999
Q ss_pred EEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCc
Q 043172 416 VYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQ 495 (564)
Q Consensus 416 V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~ 495 (564)
|+.||+++++.+..... ...|.++.++|++.||++|-.++.|.|-.... ..-+.+..|..-|.++.|.+-|+
T Consensus 575 vRcWDlregrqlqqhdF--~SQIfSLg~cP~~dWlavGMens~vevlh~sk------p~kyqlhlheScVLSlKFa~cGk 646 (705)
T KOG0639|consen 575 VRCWDLREGRQLQQHDF--SSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK------PEKYQLHLHESCVLSLKFAYCGK 646 (705)
T ss_pred eeehhhhhhhhhhhhhh--hhhheecccCCCccceeeecccCcEEEEecCC------ccceeecccccEEEEEEecccCc
Confidence 99999999887654432 34678999999999999999999999988775 34556777899999999999999
Q ss_pred EEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q 043172 496 ILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLN 559 (564)
Q Consensus 496 ~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~ 559 (564)
++++.+. |+.+..|.++-|..+...+.. ..|.++.+|.|.+|+++|+.|.+..||.+-
T Consensus 647 wfvStGk--DnlLnawrtPyGasiFqskE~----SsVlsCDIS~ddkyIVTGSGdkkATVYeV~ 704 (705)
T KOG0639|consen 647 WFVSTGK--DNLLNAWRTPYGASIFQSKES----SSVLSCDISFDDKYIVTGSGDKKATVYEVI 704 (705)
T ss_pred eeeecCc--hhhhhhccCccccceeecccc----CcceeeeeccCceEEEecCCCcceEEEEEe
Confidence 9998887 999999999988776654443 679999999999999999999999999863
No 76
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=4.9e-28 Score=219.36 Aligned_cols=251 Identities=18% Similarity=0.249 Sum_probs=219.7
Q ss_pred cCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEEC
Q 043172 256 NADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDL 335 (564)
Q Consensus 256 ~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl 335 (564)
.+..+|.+.|++.++..+....++++.|-+.+|||.-+ +..+.++. |..-|.+++|+.|.++|++|+.++.++|||+
T Consensus 53 gtfeghkgavw~~~l~~na~~aasaaadftakvw~a~t--gdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdl 129 (334)
T KOG0278|consen 53 GTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVT--GDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDL 129 (334)
T ss_pred EeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhh--hhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhc
Confidence 45678999999999999999999999999999998763 34566554 7788999999999999999999999999999
Q ss_pred CCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEEeCCCe
Q 043172 336 VKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSGGDGQ 415 (564)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s~dg~ 415 (564)
+..... ...+.+|.. .|..+.|....+.|++++.++.|++||.+++..++++..+.+|+++.++++|++|.++ ..+.
T Consensus 130 n~p~Ap-p~E~~ghtg-~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia-~gss 206 (334)
T KOG0278|consen 130 NRPKAP-PKEISGHTG-GIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIA-YGSS 206 (334)
T ss_pred cCCCCC-chhhcCCCC-cceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEe-cCce
Confidence 887652 345667665 7999999998889999999999999999999999999999999999999999977665 4578
Q ss_pred EEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEc-cccccceeEEEEcCCC
Q 043172 416 VYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTI-ENLTTKVDFMKFNNDA 494 (564)
Q Consensus 416 V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~-~~~~~~I~~l~fspdg 494 (564)
|.+||..+...+..+.... .|.+..++|+...+++|++|+.++.||..++ ..+..+ .+|.++|-||.|+|+|
T Consensus 207 V~Fwdaksf~~lKs~k~P~--nV~SASL~P~k~~fVaGged~~~~kfDy~Tg-----eEi~~~nkgh~gpVhcVrFSPdG 279 (334)
T KOG0278|consen 207 VKFWDAKSFGLLKSYKMPC--NVESASLHPKKEFFVAGGEDFKVYKFDYNTG-----EEIGSYNKGHFGPVHCVRFSPDG 279 (334)
T ss_pred eEEeccccccceeeccCcc--ccccccccCCCceEEecCcceEEEEEeccCC-----ceeeecccCCCCceEEEEECCCC
Confidence 9999999988888776543 5788889999999999999999999999998 666664 8999999999999999
Q ss_pred cEEEEEecCCCCeEEEEEcCCCceecc
Q 043172 495 QILAICSTMKKNSLKLIHIPSYNVFSN 521 (564)
Q Consensus 495 ~~La~~s~~~d~~I~lwdl~s~~~~~~ 521 (564)
...++||. ||+||||.+..++.+..
T Consensus 280 E~yAsGSE--DGTirlWQt~~~~~~~~ 304 (334)
T KOG0278|consen 280 ELYASGSE--DGTIRLWQTTPGKTYGL 304 (334)
T ss_pred ceeeccCC--CceEEEEEecCCCchhh
Confidence 99999999 99999999987766543
No 77
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.6e-26 Score=216.16 Aligned_cols=299 Identities=15% Similarity=0.162 Sum_probs=221.5
Q ss_pred eeecccCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEE--EeCCcCeEEEEEeeCCCEEEEEe-CC
Q 043172 251 RLIDANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSI--FLEDCPVRKASFLPDGSQAIIAG-RR 327 (564)
Q Consensus 251 rl~~~~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~--~~~~~~I~~l~fspdg~~l~s~~-~d 327 (564)
.-++++.+.+|.+.|++|+|+.||++|+|++.|++|+||++..-.+.....+ ...-...+.+.|+||-+.+++.. +.
T Consensus 75 Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g 154 (420)
T KOG2096|consen 75 HPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRG 154 (420)
T ss_pred cchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccC
Confidence 3456677889999999999999999999999999999999975433222211 22233568899999987776655 55
Q ss_pred CeEEEEECCCCc---eeee------ccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEE
Q 043172 328 KFFYSLDLVKAK---ADKI------GPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRS 397 (564)
Q Consensus 328 g~i~iwdl~~~~---~~~~------~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~ 397 (564)
..+++|.+...+ .... ..+...+.-.+..+-...++.+|++++.|..|.+|+++ |+.+..+. ....-+.
T Consensus 155 ~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~ 233 (420)
T KOG2096|consen 155 NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYD 233 (420)
T ss_pred CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccc
Confidence 689999765422 1100 01111122245556677788999999999999999998 88888877 4456678
Q ss_pred EEEecCCCEEEEEeCCCeEEEEECCC---Cc-----eeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCccc-
Q 043172 398 LAFADDGKQLLSSGGDGQVYHWDLRT---RT-----CIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFL- 468 (564)
Q Consensus 398 l~~spdg~~l~s~s~dg~V~lwD~~~---~~-----~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~- 468 (564)
.+.+|+|++|++++-.-.|++|.+-- |. .+..+. .|...+..+||+++...+++.|.||+++|||+.-..
T Consensus 234 aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~Lk-GH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~ 312 (420)
T KOG2096|consen 234 AAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLK-GHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYE 312 (420)
T ss_pred eeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheec-cchhheeeeeeCCCcceeEEEecCCcEEEeeccceEe
Confidence 89999999999999988899998742 21 122333 345579999999999999999999999999986431
Q ss_pred -CCcceeeEEcc----ccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCE
Q 043172 469 -GGKRKPIKTIE----NLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGF 543 (564)
Q Consensus 469 -~~~~~~~~~~~----~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~ 543 (564)
...++.+++.. ...+....+.++|.|+.||.+.+ ..|+++...+++.+..+. ..|.+.|++++|+|+|+|
T Consensus 313 ~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g---s~l~~~~se~g~~~~~~e--~~h~~~Is~is~~~~g~~ 387 (420)
T KOG2096|consen 313 AGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG---SDLKVFASEDGKDYPELE--DIHSTTISSISYSSDGKY 387 (420)
T ss_pred cCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC---CceEEEEcccCccchhHH--HhhcCceeeEEecCCCcE
Confidence 23344444442 22333448999999999998874 789999999988776543 346678999999999999
Q ss_pred EEEEcCCCeEEEEE
Q 043172 544 MAVGNAAGKVFLYK 557 (564)
Q Consensus 544 Lasgs~dG~V~lw~ 557 (564)
+++++ |..++++.
T Consensus 388 ~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 388 IATCG-DRYVRVIR 400 (420)
T ss_pred Eeeec-ceeeeeec
Confidence 99987 56777765
No 78
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=9e-28 Score=224.65 Aligned_cols=250 Identities=18% Similarity=0.233 Sum_probs=213.9
Q ss_pred eCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccc-----cCCcceEEEEEcCCCCEEEEEeCCCeEEEE
Q 043172 304 LEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVG-----REEKSLEFFEVSPDSSVIAFVGNEGYILLV 378 (564)
Q Consensus 304 ~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~-----~~~~~v~~~~~spdg~~la~~~~dg~I~lw 378 (564)
+....+.|..|||||++|++|+.||.|-+|+..+|+..+-..... .....|.|+.||.|..++|+|+.||.|++|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 355678899999999999999999999999999998754322221 123579999999999999999999999999
Q ss_pred ECCCCcEEEEee--ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCC
Q 043172 379 SSKTKELIGTLK--MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDS 456 (564)
Q Consensus 379 d~~t~~~~~~~~--~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~d 456 (564)
.+.+|++++.+. |...|+|+.|+.|+..+++++.|.++++.-+.+|+++..+..+.+ .++...|.++|.+++++|.|
T Consensus 291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsS-yvn~a~ft~dG~~iisaSsD 369 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSS-YVNEATFTDDGHHIISASSD 369 (508)
T ss_pred EEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccc-cccceEEcCCCCeEEEecCC
Confidence 999999999887 899999999999999999999999999999999999999987665 68999999999999999999
Q ss_pred CcEEEEeCCcccCCcceeeEEcccc--ccceeEEEEcCC-CcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcE
Q 043172 457 GIVNVYNRQEFLGGKRKPIKTIENL--TTKVDFMKFNND-AQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPR 533 (564)
Q Consensus 457 g~V~iwd~~~~~~~~~~~~~~~~~~--~~~I~~l~fspd-g~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~ 533 (564)
|+|+||+..+. .++.++... ..+|.++..-|. -..+++|.. .++|.|.++. |++++.+.......+...
T Consensus 370 gtvkvW~~Ktt-----eC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNr--sntv~imn~q-GQvVrsfsSGkREgGdFi 441 (508)
T KOG0275|consen 370 GTVKVWHGKTT-----ECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNR--SNTVYIMNMQ-GQVVRSFSSGKREGGDFI 441 (508)
T ss_pred ccEEEecCcch-----hhhhhccCCCCcccceeEEEcCCCCceEEEEcC--CCeEEEEecc-ceEEeeeccCCccCCceE
Confidence 99999999987 777777644 456777777774 466777777 7899999986 677777766655556667
Q ss_pred EEEEeCCCCEEEEEcCCCeEEEEEcCCCC
Q 043172 534 CLDFSPGGGFMAVGNAAGKVFLYKLNHYH 562 (564)
Q Consensus 534 ~l~fspdg~~Lasgs~dG~V~lw~l~~~~ 562 (564)
+.+.||.|.++++.+.|+.++.|.+.+++
T Consensus 442 ~~~lSpkGewiYcigED~vlYCF~~~sG~ 470 (508)
T KOG0275|consen 442 NAILSPKGEWIYCIGEDGVLYCFSVLSGK 470 (508)
T ss_pred EEEecCCCcEEEEEccCcEEEEEEeecCc
Confidence 78899999999999999999999886553
No 79
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=4.7e-26 Score=237.20 Aligned_cols=272 Identities=13% Similarity=0.174 Sum_probs=222.1
Q ss_pred cccCCCeEEcCCCccCCCeeeeeeeecccCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCc
Q 043172 228 LRTDEDLVVKSSAKLSPGLLEYSRLIDANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDC 307 (564)
Q Consensus 228 l~~~~~~~~~~~~~l~~~~~d~~rl~~~~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~ 307 (564)
+.++...+.++-..-....||+.-...+.....|.+||..|+|||+++++++||.|..|++|+.. ...++.++.+|-.
T Consensus 17 FHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk--~rrclftL~GHlD 94 (1202)
T KOG0292|consen 17 FHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK--TRRCLFTLLGHLD 94 (1202)
T ss_pred cCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecc--cceehhhhccccc
Confidence 44444455544334445566666555556677899999999999999999999999999999987 5668999999999
Q ss_pred CeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc---
Q 043172 308 PVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKE--- 384 (564)
Q Consensus 308 ~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~--- 384 (564)
.|+.+.|++.-.+|++++.|.+|+||+..++++..+ +.||.. .|.|..|+|....+++++-|.+|+|||+..-+
T Consensus 95 YVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iav--ltGHnH-YVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~ 171 (1202)
T KOG0292|consen 95 YVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAV--LTGHNH-YVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKN 171 (1202)
T ss_pred eeEEeeccCCCceEEEccCCCeEEEEeccCCceEEE--EecCce-EEEeeccCCccceEEEecccceEEEEeecchhccC
Confidence 999999999999999999999999999999998554 777765 79999999999999999999999999984210
Q ss_pred ------------------------E-E-EEee-ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCcee--EEEeecCC
Q 043172 385 ------------------------L-I-GTLK-MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCI--HRAVDEGC 435 (564)
Q Consensus 385 ------------------------~-~-~~~~-~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~--~~~~~~~~ 435 (564)
. + ..+. |...|+-++|+|.-..|++|+.|..|++|.+...+.- .+.. .|.
T Consensus 172 ~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcr-gH~ 250 (1202)
T KOG0292|consen 172 KAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCR-GHY 250 (1202)
T ss_pred CCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhh-ccc
Confidence 0 1 1122 7788999999999999999999999999999764431 1222 345
Q ss_pred cceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEc
Q 043172 436 INGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHI 513 (564)
Q Consensus 436 ~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl 513 (564)
.+++++-|+|...++++.|.|++|+|||+..- +++.++.......+.++-+|..+++|+|- |+-+.+|.+
T Consensus 251 nnVssvlfhp~q~lIlSnsEDksirVwDm~kR-----t~v~tfrrendRFW~laahP~lNLfAAgH---DsGm~VFkl 320 (1202)
T KOG0292|consen 251 NNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR-----TSVQTFRRENDRFWILAAHPELNLFAAGH---DSGMIVFKL 320 (1202)
T ss_pred CCcceEEecCccceeEecCCCccEEEEecccc-----cceeeeeccCCeEEEEEecCCcceeeeec---CCceEEEEE
Confidence 57899999999999999999999999999886 89999987788899999999999888776 444444444
No 80
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=1.1e-26 Score=212.17 Aligned_cols=250 Identities=14% Similarity=0.180 Sum_probs=215.7
Q ss_pred EEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcC-CCCEEEEEeCCCeEEEE
Q 043172 300 QSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSP-DSSVIAFVGNEGYILLV 378 (564)
Q Consensus 300 ~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~la~~~~dg~I~lw 378 (564)
..+.+|..+|.+++|+.+|..|++++.++++.+|++...+...-....+|.. .|..++|+| ....|++++.+..|++|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~-svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTD-SVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCc-chhhheeCCCCCcceEEecCCceEEEE
Confidence 3456688899999999999999999999999999999886555455566665 688888887 46789999999999999
Q ss_pred ECCCCcEEEEeeecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCc
Q 043172 379 SSKTKELIGTLKMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGI 458 (564)
Q Consensus 379 d~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~ 458 (564)
|+++++++......+.-.-+.|+|+|.++++++.|..|.+.|.++.+.+...... ..+.-++|+-++.+|+..+..|.
T Consensus 93 d~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~--~e~ne~~w~~~nd~Fflt~GlG~ 170 (313)
T KOG1407|consen 93 DIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFK--FEVNEISWNNSNDLFFLTNGLGC 170 (313)
T ss_pred EeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhccc--ceeeeeeecCCCCEEEEecCCce
Confidence 9999999999887777778999999999999999999999999998877655432 34678889877788777777899
Q ss_pred EEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEe
Q 043172 459 VNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFS 538 (564)
Q Consensus 459 V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fs 538 (564)
|.|-..... +|+.++..|.....||.|+|+|+++|+|+. |-.+.|||+...-+.+.++... -+|..+.||
T Consensus 171 v~ILsypsL-----kpv~si~AH~snCicI~f~p~GryfA~GsA--DAlvSLWD~~ELiC~R~isRld---wpVRTlSFS 240 (313)
T KOG1407|consen 171 VEILSYPSL-----KPVQSIKAHPSNCICIEFDPDGRYFATGSA--DALVSLWDVDELICERCISRLD---WPVRTLSFS 240 (313)
T ss_pred EEEEecccc-----ccccccccCCcceEEEEECCCCceEeeccc--cceeeccChhHhhhheeecccc---CceEEEEec
Confidence 999999887 999999999999999999999999999999 9999999999887777666554 679999999
Q ss_pred CCCCEEEEEcCCCeEEEEEcCCCC
Q 043172 539 PGGGFMAVGNAAGKVFLYKLNHYH 562 (564)
Q Consensus 539 pdg~~Lasgs~dG~V~lw~l~~~~ 562 (564)
.+|++||+|+.|-.|-|=++.++.
T Consensus 241 ~dg~~lASaSEDh~IDIA~vetGd 264 (313)
T KOG1407|consen 241 HDGRMLASASEDHFIDIAEVETGD 264 (313)
T ss_pred cCcceeeccCccceEEeEecccCC
Confidence 999999999999988766555543
No 81
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=4.5e-26 Score=241.14 Aligned_cols=277 Identities=16% Similarity=0.206 Sum_probs=239.4
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEE-EEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCc
Q 043172 261 STGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQS-IFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAK 339 (564)
Q Consensus 261 h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~-~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~ 339 (564)
|...|.+..|+ ..++++++.+++|++|+... ...+.. +.+|.+.|.+++|..-+.+|++|+.|.++++||..+|.
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~--~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~ 282 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNN--GYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE 282 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeeccc--ceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc
Confidence 56789999999 56899999999999998873 345555 89999999999998778899999999999999999999
Q ss_pred eeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEeCCCeEEE
Q 043172 340 ADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQVYH 418 (564)
Q Consensus 340 ~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~V~l 418 (564)
+..+ +.+|.. .+.++... ..++++|+.|.+|++|++.++..+..+. |.++|+++..+ +.++++|+.|++|.+
T Consensus 283 C~~~--l~gh~s-tv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~V 355 (537)
T KOG0274|consen 283 CTHS--LQGHTS-SVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKV 355 (537)
T ss_pred EEEE--ecCCCc-eEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEE
Confidence 8554 667776 67776654 5577888999999999999999999999 99999999998 889999999999999
Q ss_pred EECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEE
Q 043172 419 WDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILA 498 (564)
Q Consensus 419 wD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La 498 (564)
||+.++++++.+.. |...|.++.+.+. ..+++|+.|++|++||+.+. .+++.++.+|..-+..+.+ .+++|+
T Consensus 356 W~~~~~~cl~sl~g-H~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~----~~c~~tl~~h~~~v~~l~~--~~~~Lv 427 (537)
T KOG0274|consen 356 WDPRTGKCLKSLSG-HTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTK----RKCIHTLQGHTSLVSSLLL--RDNFLV 427 (537)
T ss_pred EEhhhceeeeeecC-CcceEEEEEecCc-ceEEeeeeccceEeecCCch----hhhhhhhcCCccccccccc--ccceeE
Confidence 99999999999987 4458999988765 79999999999999999874 1689999999988866655 578999
Q ss_pred EEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCCCC
Q 043172 499 ICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNHYH 562 (564)
Q Consensus 499 ~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~~~ 562 (564)
+++. |+.|++||..++.+...+... +.+.|+++++. ...+++++.+|.+.+|++.+++
T Consensus 428 s~~a--D~~Ik~WD~~~~~~~~~~~~~--~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~ 485 (537)
T KOG0274|consen 428 SSSA--DGTIKLWDAEEGECLRTLEGR--HVGGVSALALG--KEEILCSSDDGSVKLWDLRSGT 485 (537)
T ss_pred eccc--cccEEEeecccCceeeeeccC--CcccEEEeecC--cceEEEEecCCeeEEEecccCc
Confidence 9998 999999999999998876654 55778888877 4678888999999999998765
No 82
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=1.9e-26 Score=220.37 Aligned_cols=274 Identities=18% Similarity=0.219 Sum_probs=218.8
Q ss_pred cCCCeEEcCCCccCCCeeeeeeeecccCCCCCCCCeeEEEEcCCCC---EEEEEeCCCcEEEEEecCCCCce--eEEEEe
Q 043172 230 TDEDLVVKSSAKLSPGLLEYSRLIDANADESSTGPINSVQFHRNAQ---LLLVAGLDRRLRFFQIDGKRNTK--IQSIFL 304 (564)
Q Consensus 230 ~~~~~~~~~~~~l~~~~~d~~rl~~~~~~~~h~~~V~~l~fspdg~---~l~s~s~dg~I~lwd~~~~~~~~--~~~~~~ 304 (564)
.....+.++...-...+|+.. -+...+..+|.++|.+++|.-... .|++||.|.++++|.++...+.. +..-.+
T Consensus 113 ~~~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~G 191 (423)
T KOG0313|consen 113 GASKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRG 191 (423)
T ss_pred ccCceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcc
Confidence 335556555455545555543 112234568999999998876444 59999999999999997654322 333348
Q ss_pred CCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCC-----------------------ceeeeccccccCCcceEEEEEcC
Q 043172 305 EDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKA-----------------------KADKIGPLVGREEKSLEFFEVSP 361 (564)
Q Consensus 305 ~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~-----------------------~~~~~~~~~~~~~~~v~~~~~sp 361 (564)
|..+|.+++..++|..+++|+.|..+.||+..+. ...++..+.||.. +|..+.|++
T Consensus 192 Hk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~-~Vs~V~w~d 270 (423)
T KOG0313|consen 192 HKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTE-PVSSVVWSD 270 (423)
T ss_pred cccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccccc-ceeeEEEcC
Confidence 9999999999999999999999999999993221 1112344667776 899999998
Q ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCc--ee-EEEeecCCcce
Q 043172 362 DSSVIAFVGNEGYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRT--CI-HRAVDEGCING 438 (564)
Q Consensus 362 dg~~la~~~~dg~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~--~~-~~~~~~~~~~i 438 (564)
...+++++.|.+|+.||+.++..+..+..+..++++.++|..++|++|+.|..|++||.+++. .+ +.+. .|...|
T Consensus 271 -~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~-gH~nwV 348 (423)
T KOG0313|consen 271 -ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLI-GHKNWV 348 (423)
T ss_pred -CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeee-cchhhh
Confidence 778999999999999999999999999999999999999999999999999999999999753 33 3444 444489
Q ss_pred EEEEECCCCC-EEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcC
Q 043172 439 TALCTSPDGT-FFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIP 514 (564)
Q Consensus 439 ~~l~~sp~g~-~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~ 514 (564)
.++.|+|... .|++|+.|+++++||+++. ..|++.+.+|...|.++.|+ .+.++++|+. |++|+|+.-.
T Consensus 349 ssvkwsp~~~~~~~S~S~D~t~klWDvRS~----k~plydI~~h~DKvl~vdW~-~~~~IvSGGa--D~~l~i~~~~ 418 (423)
T KOG0313|consen 349 SSVKWSPTNEFQLVSGSYDNTVKLWDVRST----KAPLYDIAGHNDKVLSVDWN-EGGLIVSGGA--DNKLRIFKGS 418 (423)
T ss_pred hheecCCCCceEEEEEecCCeEEEEEeccC----CCcceeeccCCceEEEEecc-CCceEEeccC--cceEEEeccc
Confidence 9999999765 7889999999999999986 24999999999999999998 4668889988 9999998653
No 83
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=5.1e-26 Score=220.71 Aligned_cols=273 Identities=18% Similarity=0.236 Sum_probs=229.4
Q ss_pred CeEEcCCCccCCCeeeeeeeecccCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEE
Q 043172 233 DLVVKSSAKLSPGLLEYSRLIDANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKA 312 (564)
Q Consensus 233 ~~~~~~~~~l~~~~~d~~rl~~~~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l 312 (564)
.++.+++.+-..-..|...-.-+.+..||...|+.+.|||+...+++++.|..|+||.+.... .......|..+|+.+
T Consensus 232 ~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s--~~~~~~~h~~~V~~l 309 (506)
T KOG0289|consen 232 SKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS--EPTSSRPHEEPVTGL 309 (506)
T ss_pred CcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc--Cccccccccccceee
Confidence 344444444444445555444455678999999999999999999999999999999886443 555667799999999
Q ss_pred EEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-e
Q 043172 313 SFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-M 391 (564)
Q Consensus 313 ~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~ 391 (564)
..+|.|.||++++.|++....|+.++.......-.. ..-.+++.+|+|||.+|++|..||.|+|||+.++..+..|. |
T Consensus 310 s~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~-s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpgh 388 (506)
T KOG0289|consen 310 SLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDET-SDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGH 388 (506)
T ss_pred eeccCCcEEEEecCCceEEEEEccCCcEEEEEeecc-ccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCC
Confidence 999999999999999999999999998755433321 22358999999999999999999999999999999888888 9
Q ss_pred cCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCc
Q 043172 392 NGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGK 471 (564)
Q Consensus 392 ~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~ 471 (564)
.++|..++|+.+|-+|+++..|+.|++||+|..+...++.......+.+++|.+.|.+|++++.+=+|++++-.+ ..
T Consensus 389 t~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~---k~ 465 (506)
T KOG0289|consen 389 TGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKT---KS 465 (506)
T ss_pred CCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEeccc---cc
Confidence 999999999999999999999999999999998888888877666889999999999999998876666666443 34
Q ss_pred ceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEc
Q 043172 472 RKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHI 513 (564)
Q Consensus 472 ~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl 513 (564)
+..+..+..|.+..+++.|....++++++|. +..++++.+
T Consensus 466 W~~~~~~~~~sg~st~v~Fg~~aq~l~s~sm--d~~l~~~a~ 505 (506)
T KOG0289|consen 466 WTEIKELADHSGLSTGVRFGEHAQYLASTSM--DAILRLYAL 505 (506)
T ss_pred ceeeehhhhcccccceeeecccceEEeeccc--hhheEEeec
Confidence 5888888888889999999999999999998 778888764
No 84
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=3.2e-25 Score=234.26 Aligned_cols=229 Identities=14% Similarity=0.150 Sum_probs=183.7
Q ss_pred CCCCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEEecCCC-----CceeEEEEeCCcCeEEEEEeeCC-CEEEEEeCCCeE
Q 043172 258 DESSTGPINSVQFHR-NAQLLLVAGLDRRLRFFQIDGKR-----NTKIQSIFLEDCPVRKASFLPDG-SQAIIAGRRKFF 330 (564)
Q Consensus 258 ~~~h~~~V~~l~fsp-dg~~l~s~s~dg~I~lwd~~~~~-----~~~~~~~~~~~~~I~~l~fspdg-~~l~s~~~dg~i 330 (564)
..+|.++|++++|+| ++.+|++|+.|++|+||++.... ...+..+.+|...|.+++|+|++ ++|++++.|+.|
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtV 150 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVV 150 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEE
Confidence 568999999999999 88999999999999999996432 13567788999999999999975 689999999999
Q ss_pred EEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCc-EEEEEEecCCCEEE
Q 043172 331 YSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGT-VRSLAFADDGKQLL 408 (564)
Q Consensus 331 ~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~-V~~l~~spdg~~l~ 408 (564)
+|||+.++.... .+.+|.. .|.+++|+|+|.+|++++.|+.|++||+++++.+..+. |.+. +..+.|.+++..|+
T Consensus 151 rIWDl~tg~~~~--~l~~h~~-~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~iv 227 (493)
T PTZ00421 151 NVWDVERGKAVE--VIKCHSD-QITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLII 227 (493)
T ss_pred EEEECCCCeEEE--EEcCCCC-ceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEE
Confidence 999999887543 3555554 79999999999999999999999999999999888877 5543 45778999887777
Q ss_pred EEe----CCCeEEEEECCCCc-eeEEEeecCCcceEEEEECCCCCEEEEEe-CCCcEEEEeCCcccCCcceeeEEccc-c
Q 043172 409 SSG----GDGQVYHWDLRTRT-CIHRAVDEGCINGTALCTSPDGTFFAAGS-DSGIVNVYNRQEFLGGKRKPIKTIEN-L 481 (564)
Q Consensus 409 s~s----~dg~V~lwD~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~lasgs-~dg~V~iwd~~~~~~~~~~~~~~~~~-~ 481 (564)
+++ .|+.|++||+++.. ++.....+....+....|++++++|++|+ .||.|++||+... .++..... +
T Consensus 228 t~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~-----~~~~~~~~~s 302 (493)
T PTZ00421 228 TLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE-----RLTFCSSYSS 302 (493)
T ss_pred EEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC-----ceEEEeeccC
Confidence 664 47899999998754 33333333333456677899999998887 5999999999986 55554432 4
Q ss_pred ccceeEEEEcCCC
Q 043172 482 TTKVDFMKFNNDA 494 (564)
Q Consensus 482 ~~~I~~l~fspdg 494 (564)
..++..++|.|.-
T Consensus 303 ~~~~~g~~~~pk~ 315 (493)
T PTZ00421 303 VEPHKGLCMMPKW 315 (493)
T ss_pred CCCCcceEecccc
Confidence 4567888888853
No 85
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.9e-26 Score=225.84 Aligned_cols=268 Identities=19% Similarity=0.256 Sum_probs=217.7
Q ss_pred CCeEEcCCCccCCCeeeeeeeecccCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEE
Q 043172 232 EDLVVKSSAKLSPGLLEYSRLIDANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRK 311 (564)
Q Consensus 232 ~~~~~~~~~~l~~~~~d~~rl~~~~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~ 311 (564)
.++.++++.++. +++.......++..-....|++++|-.||.+|++|...|.|+|||.. +...+..+..|..||..
T Consensus 40 ~d~aVt~S~rvq--ly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k--~r~iLR~~~ah~apv~~ 115 (487)
T KOG0310|consen 40 YDFAVTSSVRVQ--LYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMK--SRVILRQLYAHQAPVHV 115 (487)
T ss_pred CceEEecccEEE--EEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccc--cHHHHHHHhhccCceeE
Confidence 356666555443 22222222223333456789999999999999999999999999954 44567788999999999
Q ss_pred EEEeeCC-CEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCC-CCEEEEEeCCCeEEEEECCCC-cEEEE
Q 043172 312 ASFLPDG-SQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPD-SSVIAFVGNEGYILLVSSKTK-ELIGT 388 (564)
Q Consensus 312 l~fspdg-~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spd-g~~la~~~~dg~I~lwd~~t~-~~~~~ 388 (564)
+.|+|++ ..+++|+.|+.+++||+.+... ...+.+|.. .|.|.+|+|. +.++++||.||.|++||+++. ..+..
T Consensus 116 ~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v--~~~l~~htD-YVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~e 192 (487)
T KOG0310|consen 116 TKFSPQDNTMLVSGSDDKVVKYWDLSTAYV--QAELSGHTD-YVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVE 192 (487)
T ss_pred EEecccCCeEEEecCCCceEEEEEcCCcEE--EEEecCCcc-eeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEE
Confidence 9999965 4556677888999999998885 446788877 8999999995 558899999999999999987 88888
Q ss_pred eeecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCccc
Q 043172 389 LKMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFL 468 (564)
Q Consensus 389 ~~~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~ 468 (564)
+.|..+|..+.+.|.|..|++++. ..|++||+.+|.........|...|||+++..++..|++|+-|+.|+|||+.+.
T Consensus 193 lnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~- 270 (487)
T KOG0310|consen 193 LNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY- 270 (487)
T ss_pred ecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccce-
Confidence 999999999999999999999876 489999999766554444435558999999999999999999999999998776
Q ss_pred CCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCC
Q 043172 469 GGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPS 515 (564)
Q Consensus 469 ~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s 515 (564)
+.++.+. ..++|.+++.+|+++.+++|-. +|.+.+-+...
T Consensus 271 ----Kvv~s~~-~~~pvLsiavs~dd~t~viGms--nGlv~~rr~~~ 310 (487)
T KOG0310|consen 271 ----KVVHSWK-YPGPVLSIAVSPDDQTVVIGMS--NGLVSIRRREV 310 (487)
T ss_pred ----EEEEeee-cccceeeEEecCCCceEEEecc--cceeeeehhhc
Confidence 8888776 5789999999999999999988 88877765443
No 86
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.1e-26 Score=233.11 Aligned_cols=241 Identities=15% Similarity=0.200 Sum_probs=209.3
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEe-CCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCc
Q 043172 261 STGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFL-EDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAK 339 (564)
Q Consensus 261 h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~-~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~ 339 (564)
+...|+++.|+++|.+|++|..+|.|.|||+. ....+..+.+ |...|-+++|. +..+.+|+.++.|..+|+...+
T Consensus 216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~--~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~ 291 (484)
T KOG0305|consen 216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVK--EQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQ 291 (484)
T ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEehh--hccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecch
Confidence 37899999999999999999999999999987 4456777777 89999999997 6788899999999999999876
Q ss_pred eeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEec-CCCEEEEEe--CCCe
Q 043172 340 ADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFAD-DGKQLLSSG--GDGQ 415 (564)
Q Consensus 340 ~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~sp-dg~~l~s~s--~dg~ 415 (564)
..-. .+.+|.. .|..++|+++++++|+|+.|+.+.|||.....++..+. |.+.|.+++|+| ....||+|+ .|+.
T Consensus 292 ~~~~-~~~~H~q-eVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~ 369 (484)
T KOG0305|consen 292 HVVS-TLQGHRQ-EVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRC 369 (484)
T ss_pred hhhh-hhhcccc-eeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccE
Confidence 5322 3555554 79999999999999999999999999997777777766 999999999999 567888875 4899
Q ss_pred EEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEE--eCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCC
Q 043172 416 VYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAG--SDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNND 493 (564)
Q Consensus 416 V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasg--s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspd 493 (564)
|++||..++..+..+... ..|++|.|++..+-|+++ ..+..|.||+..+. +++..+.+|...|..++++||
T Consensus 370 i~fwn~~~g~~i~~vdtg--sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~-----~~~~~l~gH~~RVl~la~SPd 442 (484)
T KOG0305|consen 370 IKFWNTNTGARIDSVDTG--SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM-----KLVAELLGHTSRVLYLALSPD 442 (484)
T ss_pred EEEEEcCCCcEecccccC--CceeeEEEcCCCCEEEEecCCCCCcEEEEecccc-----ceeeeecCCcceeEEEEECCC
Confidence 999999999988876543 368999999998766654 45679999999887 999999999999999999999
Q ss_pred CcEEEEEecCCCCeEEEEEcCCC
Q 043172 494 AQILAICSTMKKNSLKLIHIPSY 516 (564)
Q Consensus 494 g~~La~~s~~~d~~I~lwdl~s~ 516 (564)
|..+++|+. |.++++|++-..
T Consensus 443 g~~i~t~a~--DETlrfw~~f~~ 463 (484)
T KOG0305|consen 443 GETIVTGAA--DETLRFWNLFDE 463 (484)
T ss_pred CCEEEEecc--cCcEEeccccCC
Confidence 999999999 999999998653
No 87
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=1.5e-25 Score=232.79 Aligned_cols=317 Identities=17% Similarity=0.232 Sum_probs=255.7
Q ss_pred cccCCCeEEc-CCCccCCCeeeeeeeecccCCC-CCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCC--ceeEEEE
Q 043172 228 LRTDEDLVVK-SSAKLSPGLLEYSRLIDANADE-SSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRN--TKIQSIF 303 (564)
Q Consensus 228 l~~~~~~~~~-~~~~l~~~~~d~~rl~~~~~~~-~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~--~~~~~~~ 303 (564)
++..|..+.. +........||+.+-+-++... .|.+.|..+.|-|..+.|++++.|+.+++|-.+.+.+ ..+..-.
T Consensus 252 FrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~ 331 (910)
T KOG1539|consen 252 FRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRG 331 (910)
T ss_pred eccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeecc
Confidence 3444444332 2233445678887555555444 7999999999999999999999999999998874433 4566667
Q ss_pred eCCcCeEEEEEe-eCCCEEEEEeCCCeEEEEECCC---------------------------------------------
Q 043172 304 LEDCPVRKASFL-PDGSQAIIAGRRKFFYSLDLVK--------------------------------------------- 337 (564)
Q Consensus 304 ~~~~~I~~l~fs-pdg~~l~s~~~dg~i~iwdl~~--------------------------------------------- 337 (564)
+|..|..|+.|. .+|..+.+++.|++++.+++..
T Consensus 332 GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W 411 (910)
T KOG1539|consen 332 GHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEW 411 (910)
T ss_pred CCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhh
Confidence 899999999998 6888899998888766554321
Q ss_pred --------------------Cceeeecccccc----CCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe----
Q 043172 338 --------------------AKADKIGPLVGR----EEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTL---- 389 (564)
Q Consensus 338 --------------------~~~~~~~~~~~~----~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~---- 389 (564)
...-. ..+... ....+.+++.+++|++.+.|...|.|-+|++.+|-....+
T Consensus 412 ~Nv~~~h~~~~~~~tW~~~n~~~G~-~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ 490 (910)
T KOG1539|consen 412 DNVITAHKGKRSAYTWNFRNKTSGR-HVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSP 490 (910)
T ss_pred cceeEEecCcceEEEEeccCccccc-EEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCc
Confidence 10000 000000 1246889999999999999999999999999999988888
Q ss_pred eecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccC
Q 043172 390 KMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLG 469 (564)
Q Consensus 390 ~~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~ 469 (564)
.|.++|++++...-++.+++++.+|.+.+||..+...+..+.... .++++.++.....+|++..+-.|.++|..+.
T Consensus 491 ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~--~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~-- 566 (910)
T KOG1539|consen 491 AHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGS--SITGIVYHRVSDLLAIALDDFSIRVVDVVTR-- 566 (910)
T ss_pred cccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCC--CcceeeeeehhhhhhhhcCceeEEEEEchhh--
Confidence 389999999999888999999999999999999888777776554 4578888888889999999999999999886
Q ss_pred CcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcC
Q 043172 470 GKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNA 549 (564)
Q Consensus 470 ~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~ 549 (564)
+.++.+.+|...|+.++|||||++|++++. |++||+||++++..+-.+-.. .+++++.|||+|.|||+...
T Consensus 567 ---kvvR~f~gh~nritd~~FS~DgrWlisasm--D~tIr~wDlpt~~lID~~~vd----~~~~sls~SPngD~LAT~Hv 637 (910)
T KOG1539|consen 567 ---KVVREFWGHGNRITDMTFSPDGRWLISASM--DSTIRTWDLPTGTLIDGLLVD----SPCTSLSFSPNGDFLATVHV 637 (910)
T ss_pred ---hhhHHhhccccceeeeEeCCCCcEEEEeec--CCcEEEEeccCcceeeeEecC----CcceeeEECCCCCEEEEEEe
Confidence 889999999999999999999999999999 999999999999988765444 67899999999999999987
Q ss_pred C-CeEEEEEc
Q 043172 550 A-GKVFLYKL 558 (564)
Q Consensus 550 d-G~V~lw~l 558 (564)
| .-|++|.=
T Consensus 638 d~~gIylWsN 647 (910)
T KOG1539|consen 638 DQNGIYLWSN 647 (910)
T ss_pred cCceEEEEEc
Confidence 7 56999963
No 88
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.95 E-value=5.1e-26 Score=208.29 Aligned_cols=285 Identities=13% Similarity=0.194 Sum_probs=224.6
Q ss_pred hHHhh-cccCCCeEEcCCCccCCCeeeeeeeecccCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEE
Q 043172 223 AVDDI-LRTDEDLVVKSSAKLSPGLLEYSRLIDANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQS 301 (564)
Q Consensus 223 ~l~~l-l~~~~~~~~~~~~~l~~~~~d~~rl~~~~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~ 301 (564)
++..+ ....++++.+++++-.+.+|--..-..+.+..+|++.|+|+...-+.++|+||+.|.+++|||+.. ++.+..
T Consensus 12 plTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t--Gk~la~ 89 (327)
T KOG0643|consen 12 PLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET--GKQLAT 89 (327)
T ss_pred ccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCC--CcEEEE
Confidence 44554 667788999888888888886544444556789999999999999999999999999999999984 456666
Q ss_pred EEeCCcCeEEEEEeeCCCEEEEEe-----CCCeEEEEECCCCce-----eeeccccccCCcceEEEEEcCCCCEEEEEeC
Q 043172 302 IFLEDCPVRKASFLPDGSQAIIAG-----RRKFFYSLDLVKAKA-----DKIGPLVGREEKSLEFFEVSPDSSVIAFVGN 371 (564)
Q Consensus 302 ~~~~~~~I~~l~fspdg~~l~s~~-----~dg~i~iwdl~~~~~-----~~~~~~~~~~~~~v~~~~~spdg~~la~~~~ 371 (564)
+. ...+|..+.|+++|++++++. ..+.|.++|+..... .++..+..+. ..++.+.|.|-+.+|++|..
T Consensus 90 ~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~-skit~a~Wg~l~~~ii~Ghe 167 (327)
T KOG0643|consen 90 WK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD-SKITSALWGPLGETIIAGHE 167 (327)
T ss_pred ee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCc-cceeeeeecccCCEEEEecC
Confidence 66 457899999999999988874 446899999884321 1122344444 36899999999999999999
Q ss_pred CCeEEEEECCCCcEE-EEee-ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCE
Q 043172 372 EGYILLVSSKTKELI-GTLK-MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTF 449 (564)
Q Consensus 372 dg~I~lwd~~t~~~~-~~~~-~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~ 449 (564)
+|.|.+||+++++.. .... |...|++++++|+..++++++.|.+-++||+.+-.++.++.... ++.+.+++|...+
T Consensus 168 ~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~--PvN~aaisP~~d~ 245 (327)
T KOG0643|consen 168 DGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTER--PVNTAAISPLLDH 245 (327)
T ss_pred CCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecc--cccceecccccce
Confidence 999999999998554 4434 88899999999999999999999999999999999999988765 5678999998888
Q ss_pred EEEEeCCCcEEEEeCCcccC---------CcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCC
Q 043172 450 FAAGSDSGIVNVYNRQEFLG---------GKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPS 515 (564)
Q Consensus 450 lasgs~dg~V~iwd~~~~~~---------~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s 515 (564)
++.|+.....-|=-.....+ -....+..+++|-++|++|+|+|+|...++|+. ||.|||.++..
T Consensus 246 VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGE--DG~VR~h~Fd~ 318 (327)
T KOG0643|consen 246 VILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGE--DGYVRLHHFDS 318 (327)
T ss_pred EEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCC--CceEEEEEecc
Confidence 88776432222211111000 011345667899999999999999999999988 99999998764
No 89
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=2.3e-26 Score=214.26 Aligned_cols=281 Identities=17% Similarity=0.254 Sum_probs=224.5
Q ss_pred hcccCCCeEEcCCCccCCCeeeeeeeecc------------------cCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEE
Q 043172 227 ILRTDEDLVVKSSAKLSPGLLEYSRLIDA------------------NADESSTGPINSVQFHRNAQLLLVAGLDRRLRF 288 (564)
Q Consensus 227 ll~~~~~~~~~~~~~l~~~~~d~~rl~~~------------------~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~l 288 (564)
.+...|.++++++.+...+++|..|+.-. .+...|...|+++.|||...+|++|+.|++|++
T Consensus 119 afs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKl 198 (430)
T KOG0640|consen 119 AFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKL 198 (430)
T ss_pred eeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEE
Confidence 45566777777777777777776643211 112248999999999999999999999999999
Q ss_pred EEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEE
Q 043172 289 FQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAF 368 (564)
Q Consensus 289 wd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~ 368 (564)
||+.....+....+.....+|.++.|+|.|.+|++|.....+++||+++-++-........+...|+++.+++.|++.++
T Consensus 199 FDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvT 278 (430)
T KOG0640|consen 199 FDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVT 278 (430)
T ss_pred EecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEE
Confidence 99975433333333345679999999999999999999999999999998874433333334458999999999999999
Q ss_pred EeCCCeEEEEECCCCcEEEEee--ec-CcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcc----eEEE
Q 043172 369 VGNEGYILLVSSKTKELIGTLK--MN-GTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCIN----GTAL 441 (564)
Q Consensus 369 ~~~dg~I~lwd~~t~~~~~~~~--~~-~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~----i~~l 441 (564)
++.||.|+|||--+++++.++. |. ..|.+..|..+|++|++.+.|..|++|.+.+++++..+.+.+..+ -+..
T Consensus 279 aSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqA 358 (430)
T KOG0640|consen 279 ASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQA 358 (430)
T ss_pred eccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhh
Confidence 9999999999999999999987 54 479999999999999999999999999999999999988753221 1344
Q ss_pred EECCCCCEEEEEeC-CCcEEEEeCCcccCCcceeeE-EccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcC
Q 043172 442 CTSPDGTFFAAGSD-SGIVNVYNRQEFLGGKRKPIK-TIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIP 514 (564)
Q Consensus 442 ~~sp~g~~lasgs~-dg~V~iwd~~~~~~~~~~~~~-~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~ 514 (564)
.|+....|++.-.+ .+.+.-||.++. ..+. .-.+|.+.+..+.-||.+.-+++||. |-.+|+|--+
T Consensus 359 vFNhtEdyVl~pDEas~slcsWdaRta-----dr~~l~slgHn~a~R~i~HSP~~p~FmTcsd--D~raRFWyrr 426 (430)
T KOG0640|consen 359 VFNHTEDYVLFPDEASNSLCSWDARTA-----DRVALLSLGHNGAVRWIVHSPVEPAFMTCSD--DFRARFWYRR 426 (430)
T ss_pred hhcCccceEEccccccCceeeccccch-----hhhhhcccCCCCCceEEEeCCCCCceeeecc--cceeeeeeec
Confidence 57777777776543 578999999985 2222 23579999999999999999999998 8999999754
No 90
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.3e-25 Score=209.80 Aligned_cols=294 Identities=14% Similarity=0.151 Sum_probs=243.7
Q ss_pred cCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEEC
Q 043172 256 NADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDL 335 (564)
Q Consensus 256 ~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl 335 (564)
....||...|+.++-....+++.+++.|.+.+||.+. ...++..+.+|.+.|.++.|++.+..+++++.|++.+||..
T Consensus 142 re~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~E--sg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~ 219 (481)
T KOG0300|consen 142 RELEGHKDGIWHVAADSTQPICGTASADHTARIWSLE--SGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKA 219 (481)
T ss_pred hhhcccccceeeehhhcCCcceeecccccceeEEeec--cccceeeecccccceeeEEeccccceEEEccCCcchHHHHH
Confidence 3457899999999999888899999999999999998 45688999999999999999999999999999999999962
Q ss_pred ------CCCc--------------------------------eeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEE
Q 043172 336 ------VKAK--------------------------------ADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILL 377 (564)
Q Consensus 336 ------~~~~--------------------------------~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~l 377 (564)
.... ..++..+.+|.. .|.+..|-..|+.+++++.|.+-.+
T Consensus 220 av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~-vV~a~dWL~gg~Q~vTaSWDRTAnl 298 (481)
T KOG0300|consen 220 AVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRA-VVSACDWLAGGQQMVTASWDRTANL 298 (481)
T ss_pred hhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeecccc-ceEehhhhcCcceeeeeecccccee
Confidence 1100 012234556554 6888889899999999999999999
Q ss_pred EECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCce-eEEEeecCCcceEEEEECCCCCEEEEEeC
Q 043172 378 VSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTC-IHRAVDEGCINGTALCTSPDGTFFAAGSD 455 (564)
Q Consensus 378 wd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~-~~~~~~~~~~~i~~l~~sp~g~~lasgs~ 455 (564)
||+.++..+..+. |....+.++-+|..+++++++.|.+.++||++..-. +..|. .|...++++.|..+. .+++|+.
T Consensus 299 wDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQ-GHtdtVTS~vF~~dd-~vVSgSD 376 (481)
T KOG0300|consen 299 WDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQ-GHTDTVTSVVFNTDD-RVVSGSD 376 (481)
T ss_pred eeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeec-ccccceeEEEEecCC-ceeecCC
Confidence 9999999999998 888999999999999999999999999999985433 34444 445578999998654 6889999
Q ss_pred CCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCC--CCCCCCCCcE
Q 043172 456 SGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWP--PANRNLQYPR 533 (564)
Q Consensus 456 dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~--~~~~~~~~V~ 533 (564)
|.+|+|||+++. ..|+.++. ...+++.++.+..+.++++--. +..|||||+....+ ..+| ...+|...|+
T Consensus 377 DrTvKvWdLrNM----RsplATIR-tdS~~NRvavs~g~~iIAiPhD--NRqvRlfDlnG~Rl-aRlPrtsRqgHrRMV~ 448 (481)
T KOG0300|consen 377 DRTVKVWDLRNM----RSPLATIR-TDSPANRVAVSKGHPIIAIPHD--NRQVRLFDLNGNRL-ARLPRTSRQGHRRMVT 448 (481)
T ss_pred CceEEEeeeccc----cCcceeee-cCCccceeEeecCCceEEeccC--CceEEEEecCCCcc-ccCCcccccccceeee
Confidence 999999999976 47788887 4688999999998888888776 88999999976544 4445 3467888899
Q ss_pred EEEEeCCC--CEEEEEcCCCeEEEEEcCCCC
Q 043172 534 CLDFSPGG--GFMAVGNAAGKVFLYKLNHYH 562 (564)
Q Consensus 534 ~l~fspdg--~~Lasgs~dG~V~lw~l~~~~ 562 (564)
|++|..+- .-|++++-|..+.=|+++...
T Consensus 449 c~AW~eehp~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 449 CCAWLEEHPACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred eeeccccCcccccccccccceeeeeEecccC
Confidence 99998543 347788999999999998654
No 91
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=6.2e-25 Score=205.37 Aligned_cols=288 Identities=18% Similarity=0.254 Sum_probs=227.9
Q ss_pred CCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCC
Q 043172 259 ESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKA 338 (564)
Q Consensus 259 ~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~ 338 (564)
.+....|++|.|+|.+..|++++.||++++|++... .... ...|..|+.+++|.+ ...+++|+.||.|+.+|++++
T Consensus 10 npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~--~l~~-~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~ 85 (323)
T KOG1036|consen 10 NPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN--SLKL-KFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTG 85 (323)
T ss_pred CCChhceeeEEEcCcCCcEEEEeccCcEEEEeccch--hhhh-heecCCceeeeeccC-CceEEEeccCceEEEEEecCC
Confidence 345678999999999999999999999999999754 2322 334889999999986 568999999999999999999
Q ss_pred ceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEEeCCCeEEE
Q 043172 339 KADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSGGDGQVYH 418 (564)
Q Consensus 339 ~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s~dg~V~l 418 (564)
.... + +.+..++.|+.+++-...+++|+.|+.|++||.+.......+.....|.++... |+.|++|+.+..|.+
T Consensus 86 ~~~~---i-gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~--g~~LvVg~~~r~v~i 159 (323)
T KOG1036|consen 86 NEDQ---I-GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVS--GNRLVVGTSDRKVLI 159 (323)
T ss_pred ccee---e-ccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEecc--CCEEEEeecCceEEE
Confidence 8654 2 444458999999999899999999999999999987777777777788888776 778999999999999
Q ss_pred EECCCCceeEEEe-ecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEcccc---------ccceeEE
Q 043172 419 WDLRTRTCIHRAV-DEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENL---------TTKVDFM 488 (564)
Q Consensus 419 wD~~~~~~~~~~~-~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~---------~~~I~~l 488 (564)
||+++.....+.. ..-...+.++++-|++.-++++|-+|.|.+=.+.... .....-..|+-| .-+|++|
T Consensus 160 yDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~-~~~skkyaFkCHr~~~~~~~~~yPVNai 238 (323)
T KOG1036|consen 160 YDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSE-EAQSKKYAFKCHRLSEKDTEIIYPVNAI 238 (323)
T ss_pred EEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCch-HHhhhceeEEeeecccCCceEEEEecee
Confidence 9999865543222 2234567899999998889999999998875554320 011122233322 2589999
Q ss_pred EEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcC-----CCe-------EEEE
Q 043172 489 KFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNA-----AGK-------VFLY 556 (564)
Q Consensus 489 ~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~-----dG~-------V~lw 556 (564)
+|+|-.+.||+|+. ||.|.+||+.+.+.+..+.... ..|.+++|+.+|..||+++. ... |.|.
T Consensus 239 ~Fhp~~~tfaTgGs--DG~V~~Wd~~~rKrl~q~~~~~---~SI~slsfs~dG~~LAia~sy~ye~~~~~~~~~~~i~I~ 313 (323)
T KOG1036|consen 239 AFHPIHGTFATGGS--DGIVNIWDLFNRKRLKQLAKYE---TSISSLSFSMDGSLLAIASSYQYERADTPTHERNAIFIR 313 (323)
T ss_pred EeccccceEEecCC--CceEEEccCcchhhhhhccCCC---CceEEEEeccCCCeEEEEechhhhcCCCCCCCCCceEEE
Confidence 99999999999999 9999999999888877766553 56999999999999999864 223 7777
Q ss_pred EcCCCC
Q 043172 557 KLNHYH 562 (564)
Q Consensus 557 ~l~~~~ 562 (564)
.+..+.
T Consensus 314 ~l~d~e 319 (323)
T KOG1036|consen 314 DLTDYE 319 (323)
T ss_pred eccccc
Confidence 776654
No 92
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=9.5e-25 Score=231.83 Aligned_cols=242 Identities=13% Similarity=0.154 Sum_probs=182.8
Q ss_pred eeeeeeeecccCCCCCCCCeeEEEEcCC-CCEEEEEeCCCcEEEEEecCCCC------ceeEEEEeCCcCeEEEEEeeCC
Q 043172 246 LLEYSRLIDANADESSTGPINSVQFHRN-AQLLLVAGLDRRLRFFQIDGKRN------TKIQSIFLEDCPVRKASFLPDG 318 (564)
Q Consensus 246 ~~d~~rl~~~~~~~~h~~~V~~l~fspd-g~~l~s~s~dg~I~lwd~~~~~~------~~~~~~~~~~~~I~~l~fspdg 318 (564)
.|+..+........+|.++|.+++|+|+ +.+|++|+.|++|+||++..... ..+..+.+|...|.+++|+|++
T Consensus 58 L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g 137 (568)
T PTZ00420 58 LENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMN 137 (568)
T ss_pred eeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCC
Confidence 3444343344556789999999999996 78999999999999999964221 2345678899999999999998
Q ss_pred CEE-EEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEE
Q 043172 319 SQA-IIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVR 396 (564)
Q Consensus 319 ~~l-~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~ 396 (564)
..+ ++++.|+.|+|||+.+++.... +. +. ..|.+++|+|+|.+|++++.|+.|+|||+++++.+..+. |.+.+.
T Consensus 138 ~~iLaSgS~DgtIrIWDl~tg~~~~~--i~-~~-~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~ 213 (568)
T PTZ00420 138 YYIMCSSGFDSFVNIWDIENEKRAFQ--IN-MP-KKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKN 213 (568)
T ss_pred CeEEEEEeCCCeEEEEECCCCcEEEE--Ee-cC-CcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCce
Confidence 765 6788999999999998875432 32 22 369999999999999999999999999999999988887 766543
Q ss_pred EE-----EEecCCCEEEEEeCCC----eEEEEECCC-CceeEEEeecCCcce-EEEEECCCCCEEEEEeCCCcEEEEeCC
Q 043172 397 SL-----AFADDGKQLLSSGGDG----QVYHWDLRT-RTCIHRAVDEGCING-TALCTSPDGTFFAAGSDSGIVNVYNRQ 465 (564)
Q Consensus 397 ~l-----~~spdg~~l~s~s~dg----~V~lwD~~~-~~~~~~~~~~~~~~i-~~l~~sp~g~~lasgs~dg~V~iwd~~ 465 (564)
+. .|++++.+|++++.++ +|+|||++. ..++..+.......+ ......++|.++++|+.|+.|++|++.
T Consensus 214 s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~ 293 (568)
T PTZ00420 214 TKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHS 293 (568)
T ss_pred eEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEcc
Confidence 32 3457888999988764 799999995 566665544433333 233334568899999999999999997
Q ss_pred cccCCcceeeEEccccccceeEEEEcCCCc
Q 043172 466 EFLGGKRKPIKTIENLTTKVDFMKFNNDAQ 495 (564)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~I~~l~fspdg~ 495 (564)
.. ....+..+. +..++.+++|.|...
T Consensus 294 ~~---~~~~l~~~~-s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 294 LG---SIRKVNEYK-SCSPFRSFGFLPKQI 319 (568)
T ss_pred CC---cEEeecccc-cCCCccceEEccccc
Confidence 64 122233333 567888999999643
No 93
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=2.4e-26 Score=221.89 Aligned_cols=241 Identities=24% Similarity=0.268 Sum_probs=207.0
Q ss_pred cCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEEC
Q 043172 256 NADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDL 335 (564)
Q Consensus 256 ~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl 335 (564)
.+..+..++|+++.|.+++..+++++.|+.+++|+++ ......++.+|...|+++.|......+++|+.|.+|++||+
T Consensus 213 ~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd--~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl 290 (459)
T KOG0288|consen 213 STLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVD--SLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDL 290 (459)
T ss_pred hhhhccCCCcceeeecCCCceEEeecCCCceeeeecc--chhhhhhhcccccceeeehhhccccceeeccccchhhhhhh
Confidence 3455778899999999999999999999999999998 44577888999999999999987777999999999999999
Q ss_pred CCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEEeCCCe
Q 043172 336 VKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSGGDGQ 415 (564)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s~dg~ 415 (564)
....+.+.. +++. .+..++.+ ...+++|-.|+.|++||.++..+.......+.|+++..++++..|++++.|.+
T Consensus 291 ~k~~C~kt~-l~~S---~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdt 364 (459)
T KOG0288|consen 291 QKAYCSKTV-LPGS---QCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDT 364 (459)
T ss_pred hhhheeccc-cccc---cccceEec--ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCc
Confidence 997765432 2222 24445554 56788888999999999999999999998889999999999999999999999
Q ss_pred EEEEECCCCceeEEEeecC---CcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEcccccc--ceeEEEE
Q 043172 416 VYHWDLRTRTCIHRAVDEG---CINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTT--KVDFMKF 490 (564)
Q Consensus 416 V~lwD~~~~~~~~~~~~~~---~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~--~I~~l~f 490 (564)
+.+.|+++....+.+...+ ....+.++|||++.|+|+||.||.|+||++.++ +..+.+...+. .|++++|
T Consensus 365 l~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg-----KlE~~l~~s~s~~aI~s~~W 439 (459)
T KOG0288|consen 365 LKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG-----KLEKVLSLSTSNAAITSLSW 439 (459)
T ss_pred eeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCc-----eEEEEeccCCCCcceEEEEE
Confidence 9999999988887776532 224688999999999999999999999999997 77777765554 4999999
Q ss_pred cCCCcEEEEEecCCCCeEEEE
Q 043172 491 NNDAQILAICSTMKKNSLKLI 511 (564)
Q Consensus 491 spdg~~La~~s~~~d~~I~lw 511 (564)
+|.|..|++++. +..+.+|
T Consensus 440 ~~sG~~Llsadk--~~~v~lW 458 (459)
T KOG0288|consen 440 NPSGSGLLSADK--QKAVTLW 458 (459)
T ss_pred cCCCchhhcccC--CcceEec
Confidence 999999999998 8899998
No 94
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.94 E-value=5.6e-24 Score=213.28 Aligned_cols=270 Identities=14% Similarity=0.188 Sum_probs=204.7
Q ss_pred CCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEE-EEeCCCeEEEEECCCCceeeeccccccCCc
Q 043172 274 AQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAI-IAGRRKFFYSLDLVKAKADKIGPLVGREEK 352 (564)
Q Consensus 274 g~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~-s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~ 352 (564)
+.++++++.|+.|++|++.+ ...+..+..+. .+.+++|+|+++.++ +++.++.|++||+.+++.... +..+.
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t--~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~--~~~~~-- 73 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTAT--LEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGT--LPSGP-- 73 (300)
T ss_pred CcEEEEecCCCEEEEEECCC--CceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEe--ccCCC--
Confidence 35788999999999999874 34666666554 467899999999875 556789999999998876442 33222
Q ss_pred ceEEEEEcCCCCEEEEE-eCCCeEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEEeCCC-eEEEEECCCCceeEEE
Q 043172 353 SLEFFEVSPDSSVIAFV-GNEGYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSGGDG-QVYHWDLRTRTCIHRA 430 (564)
Q Consensus 353 ~v~~~~~spdg~~la~~-~~dg~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s~dg-~V~lwD~~~~~~~~~~ 430 (564)
.+..++|+|+++.++++ +.++.|.+||+.+.+.+..+.+...+.+++|+|+|.++++++.++ .+.+||..++..+...
T Consensus 74 ~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~ 153 (300)
T TIGR03866 74 DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNV 153 (300)
T ss_pred CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEE
Confidence 35678999999987665 457999999999988887777556678999999999999888765 5778899888776554
Q ss_pred eecCCcceEEEEECCCCCEEEEE-eCCCcEEEEeCCcccCCcceeeEEcccc-------ccceeEEEEcCCCcEEEEEec
Q 043172 431 VDEGCINGTALCTSPDGTFFAAG-SDSGIVNVYNRQEFLGGKRKPIKTIENL-------TTKVDFMKFNNDAQILAICST 502 (564)
Q Consensus 431 ~~~~~~~i~~l~~sp~g~~lasg-s~dg~V~iwd~~~~~~~~~~~~~~~~~~-------~~~I~~l~fspdg~~La~~s~ 502 (564)
.... .+.+++|+|++++|+++ ..++.|.+||+.+. +.+..+..+ ......++|+|++++++++..
T Consensus 154 ~~~~--~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~ 226 (300)
T TIGR03866 154 LVDQ--RPRFAEFTADGKELWVSSEIGGTVSVIDVATR-----KVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALG 226 (300)
T ss_pred EcCC--CccEEEECCCCCEEEEEcCCCCEEEEEEcCcc-----eeeeeeeecccccccccCCccceEECCCCCEEEEEcC
Confidence 3332 34678999999988655 46899999999876 444444311 112356889999998766544
Q ss_pred CCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEc-CCCeEEEEEcCCCC
Q 043172 503 MKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGN-AAGKVFLYKLNHYH 562 (564)
Q Consensus 503 ~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs-~dG~V~lw~l~~~~ 562 (564)
. ++.|.+||+.+++....+.. ...+.+++|+|+|++|++++ .+|.|.+||+...+
T Consensus 227 ~-~~~i~v~d~~~~~~~~~~~~----~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 227 P-ANRVAVVDAKTYEVLDYLLV----GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred C-CCeEEEEECCCCcEEEEEEe----CCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 3 67899999998887654422 24688999999999998864 68999999998754
No 95
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=4.8e-25 Score=206.36 Aligned_cols=247 Identities=11% Similarity=0.181 Sum_probs=209.2
Q ss_pred eecccCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCC--EEEEEeCCCe
Q 043172 252 LIDANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGS--QAIIAGRRKF 329 (564)
Q Consensus 252 l~~~~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~--~l~s~~~dg~ 329 (564)
+........|.++|++|+.+ ++++|+||.|-+|+|||+. +...+..+-.|.+.|+++.|.+.-. .|++|+.||.
T Consensus 33 l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~--k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~ 108 (362)
T KOG0294|consen 33 LKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMR--KRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGH 108 (362)
T ss_pred eeccccccccccceeEEEec--ceeEeccCCCCcEEEEecc--chhhhcceeccccceEEEEecCCcchhheeeecCCCc
Confidence 34455567899999999986 8999999999999999987 5567778888999999999998654 8999999999
Q ss_pred EEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEE
Q 043172 330 FYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLS 409 (564)
Q Consensus 330 i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s 409 (564)
|.+|+...-.. +..+.+|.. .|+.++++|.|++.++.+.|+.+++||+-+|+.-..++.....+.+.|+|.|.+++.
T Consensus 109 i~iw~~~~W~~--~~slK~H~~-~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v 185 (362)
T KOG0294|consen 109 IIIWRVGSWEL--LKSLKAHKG-QVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVV 185 (362)
T ss_pred EEEEEcCCeEE--eeeeccccc-ccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEE
Confidence 99999877654 556777776 499999999999999999999999999999988777775555666999999999998
Q ss_pred EeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEE
Q 043172 410 SGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMK 489 (564)
Q Consensus 410 ~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~ 489 (564)
++.+ .|-+|.+.+......+... ..+.++.|. ++..|++|..++.|.+||.... .|+..+.+|...|-.+.
T Consensus 186 ~~~~-~i~i~q~d~A~v~~~i~~~--~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~-----~~~~~~~AH~~RVK~i~ 256 (362)
T KOG0294|consen 186 SGRN-KIDIYQLDNASVFREIENP--KRILCATFL-DGSELLVGGDNEWISLKDTDSD-----TPLTEFLAHENRVKDIA 256 (362)
T ss_pred Eecc-EEEEEecccHhHhhhhhcc--ccceeeeec-CCceEEEecCCceEEEeccCCC-----ccceeeecchhheeeeE
Confidence 8876 5889998876665544433 345666664 5678999999999999999987 89999999999999998
Q ss_pred E--cCCCcEEEEEecCCCCeEEEEEcCCC
Q 043172 490 F--NNDAQILAICSTMKKNSLKLIHIPSY 516 (564)
Q Consensus 490 f--spdg~~La~~s~~~d~~I~lwdl~s~ 516 (564)
+ +|++.+|+++|. ||.|++||+...
T Consensus 257 ~~~~~~~~~lvTaSS--DG~I~vWd~~~~ 283 (362)
T KOG0294|consen 257 SYTNPEHEYLVTASS--DGFIKVWDIDME 283 (362)
T ss_pred EEecCCceEEEEecc--CceEEEEEcccc
Confidence 5 567899999999 999999999765
No 96
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=3.1e-25 Score=227.91 Aligned_cols=259 Identities=16% Similarity=0.222 Sum_probs=221.7
Q ss_pred CeeeeeeeecccCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEE
Q 043172 245 GLLEYSRLIDANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIA 324 (564)
Q Consensus 245 ~~~d~~rl~~~~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~ 324 (564)
.+|+...++++.+... +-+.|..|-|.++++++|...|.+.+||+... ..+.++..|.+.|.+++.+||+..+++|
T Consensus 397 kiWn~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~--~l~Eti~AHdgaIWsi~~~pD~~g~vT~ 472 (888)
T KOG0306|consen 397 KIWNRDTLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLASA--SLVETIRAHDGAIWSISLSPDNKGFVTG 472 (888)
T ss_pred EEEEccCcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeehh--hhhhhhhccccceeeeeecCCCCceEEe
Confidence 4555555555544433 47899999999999999999999999999844 4666777999999999999999999999
Q ss_pred eCCCeEEEEECCC-----Cceeeeccccc----cCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCc
Q 043172 325 GRRKFFYSLDLVK-----AKADKIGPLVG----REEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGT 394 (564)
Q Consensus 325 ~~dg~i~iwdl~~-----~~~~~~~~~~~----~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~ 394 (564)
|.|.+|++||+.- |...++..+.. .-...|.|+.+||||++||++--|.+|+||-+.+.+..-.+. |.-|
T Consensus 473 saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLP 552 (888)
T KOG0306|consen 473 SADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLP 552 (888)
T ss_pred cCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccc
Confidence 9999999999642 11111111110 011368999999999999999999999999999998877776 8999
Q ss_pred EEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCccee
Q 043172 395 VRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKP 474 (564)
Q Consensus 395 V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~ 474 (564)
|.|+..+||++.+++||.|.+|++|-+.-|.|-..+..|.. .|.++.|-|...++.+++.|+.|+-||-... ..
T Consensus 553 V~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdD-Svm~V~F~P~~~~FFt~gKD~kvKqWDg~kF-----e~ 626 (888)
T KOG0306|consen 553 VLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDD-SVMSVQFLPKTHLFFTCGKDGKVKQWDGEKF-----EE 626 (888)
T ss_pred eeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccC-ceeEEEEcccceeEEEecCcceEEeechhhh-----hh
Confidence 99999999999999999999999999999999888876554 7899999999999999999999999999887 99
Q ss_pred eEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCC
Q 043172 475 IKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPS 515 (564)
Q Consensus 475 ~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s 515 (564)
+.++.+|...|++++.+|+|.+++++|. |.+||+|....
T Consensus 627 iq~L~~H~~ev~cLav~~~G~~vvs~sh--D~sIRlwE~td 665 (888)
T KOG0306|consen 627 IQKLDGHHSEVWCLAVSPNGSFVVSSSH--DKSIRLWERTD 665 (888)
T ss_pred heeeccchheeeeeEEcCCCCeEEeccC--CceeEeeeccC
Confidence 9999999999999999999999999999 99999998765
No 97
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=4.9e-26 Score=230.60 Aligned_cols=288 Identities=16% Similarity=0.163 Sum_probs=234.8
Q ss_pred CCCCCee---EEEEcC-CCCEEEEEeCCCcEEEEEecCCCCc----eeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEE
Q 043172 260 SSTGPIN---SVQFHR-NAQLLLVAGLDRRLRFFQIDGKRNT----KIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFY 331 (564)
Q Consensus 260 ~h~~~V~---~l~fsp-dg~~l~s~s~dg~I~lwd~~~~~~~----~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~ 331 (564)
.|...|. ++..++ .+++|+|||.||.|++|++....+. .+.++..|...|..++...+|+.|++++.|-+|+
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK 98 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVK 98 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEE
Confidence 3555666 666664 6678999999999999998654432 4777888999999999999999999999999999
Q ss_pred EEECCCCceeeeccccccCCcceEEEEE-cCCCCEEEEEeCCCeEEEEECCCC--cEEEEee----------ecCcEEEE
Q 043172 332 SLDLVKAKADKIGPLVGREEKSLEFFEV-SPDSSVIAFVGNEGYILLVSSKTK--ELIGTLK----------MNGTVRSL 398 (564)
Q Consensus 332 iwdl~~~~~~~~~~~~~~~~~~v~~~~~-spdg~~la~~~~dg~I~lwd~~t~--~~~~~~~----------~~~~V~~l 398 (564)
+|+...+.......+..|.. .|.|+++ .++..++|+||-|+.|.+||+.++ +.+..+. +...|+++
T Consensus 99 ~W~~~~~~~~c~stir~H~D-YVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSL 177 (735)
T KOG0308|consen 99 VWNAHKDNTFCMSTIRTHKD-YVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSL 177 (735)
T ss_pred EeecccCcchhHhhhhcccc-hheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeee
Confidence 99998875333445555555 8999999 788899999999999999999987 3333322 34579999
Q ss_pred EEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEc
Q 043172 399 AFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTI 478 (564)
Q Consensus 399 ~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~ 478 (564)
+.++.|..|++|+..+.+++||.++++.+..+.+ |...|.++..+++|+.++++|.||+|++||+... +++.++
T Consensus 178 A~N~t~t~ivsGgtek~lr~wDprt~~kimkLrG-HTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ-----rCl~T~ 251 (735)
T KOG0308|consen 178 AMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRG-HTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ-----RCLATY 251 (735)
T ss_pred ecCCcceEEEecCcccceEEeccccccceeeeec-cccceEEEEEcCCCCeEeecCCCceEEeeecccc-----ceeeeE
Confidence 9999999999999999999999999999888884 5558999999999999999999999999999886 999999
Q ss_pred cccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEc
Q 043172 479 ENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKL 558 (564)
Q Consensus 479 ~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l 558 (564)
..|...|+++..+|+-.++++|+. ++.|..=++.+......+- ....+|..+..+...+-+-+++.|+.|.-|.+
T Consensus 252 ~vH~e~VWaL~~~~sf~~vYsG~r--d~~i~~Tdl~n~~~~tlic---k~daPv~~l~~~~~~~~~WvtTtds~I~rW~~ 326 (735)
T KOG0308|consen 252 IVHKEGVWALQSSPSFTHVYSGGR--DGNIYRTDLRNPAKSTLIC---KEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKL 326 (735)
T ss_pred EeccCceEEEeeCCCcceEEecCC--CCcEEecccCCchhheEee---cCCCchhhhhhccccCCceeeeccccceecCC
Confidence 999999999999999999999998 9999999998743222111 12245666666644444467778888888876
Q ss_pred C
Q 043172 559 N 559 (564)
Q Consensus 559 ~ 559 (564)
.
T Consensus 327 ~ 327 (735)
T KOG0308|consen 327 E 327 (735)
T ss_pred c
Confidence 4
No 98
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=1.3e-24 Score=230.13 Aligned_cols=269 Identities=17% Similarity=0.241 Sum_probs=224.8
Q ss_pred CCeEEcCCCccCCCeeeeeeeecccC-CCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeE
Q 043172 232 EDLVVKSSAKLSPGLLEYSRLIDANA-DESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVR 310 (564)
Q Consensus 232 ~~~~~~~~~~l~~~~~d~~rl~~~~~-~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~ 310 (564)
..++..+...-....|+......... ..+|.+.|.+++|..-+.+|++|+.|.++++||+. ++.++.++.+|...|.
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~--sg~C~~~l~gh~stv~ 295 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCS--TGECTHSLQGHTSSVR 295 (537)
T ss_pred cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecC--CCcEEEEecCCCceEE
Confidence 44444443333336777765555555 88999999999999888999999999999999976 5679999999999999
Q ss_pred EEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee
Q 043172 311 KASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK 390 (564)
Q Consensus 311 ~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~ 390 (564)
++... ...+++|+.|.+|++|++.++....+ +.+|.. +|.++.++ +.++++|+.|++|.+|++.+++++.++.
T Consensus 296 ~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l--~~~h~~-~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~ 368 (537)
T KOG0274|consen 296 CLTID--PFLLVSGSRDNTVKVWDVTNGACLNL--LRGHTG-PVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLS 368 (537)
T ss_pred EEEcc--CceEeeccCCceEEEEeccCcceEEE--eccccc-cEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeec
Confidence 98775 45778889999999999999987554 455554 89999987 8899999999999999999999999999
Q ss_pred -ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCC-ceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCccc
Q 043172 391 -MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTR-TCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFL 468 (564)
Q Consensus 391 -~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~ 468 (564)
|.+.|.++.+.+. ..+++|+.|++|++||+++. +|+..+..+... +..+ ...+++|++++.||+|++||...+
T Consensus 369 gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~-v~~l--~~~~~~Lvs~~aD~~Ik~WD~~~~- 443 (537)
T KOG0274|consen 369 GHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSL-VSSL--LLRDNFLVSSSADGTIKLWDAEEG- 443 (537)
T ss_pred CCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccc-cccc--ccccceeEeccccccEEEeecccC-
Confidence 9999999988754 88999999999999999999 899888766553 3333 446789999999999999999998
Q ss_pred CCcceeeEEccc-cccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccC
Q 043172 469 GGKRKPIKTIEN-LTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNW 522 (564)
Q Consensus 469 ~~~~~~~~~~~~-~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~ 522 (564)
.+++++.+ |...|+.+++. ...+++++. ++.+++||+++++..+.+
T Consensus 444 ----~~~~~~~~~~~~~v~~l~~~--~~~il~s~~--~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 444 ----ECLRTLEGRHVGGVSALALG--KEEILCSSD--DGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred ----ceeeeeccCCcccEEEeecC--cceEEEEec--CCeeEEEecccCchhhhh
Confidence 89999988 67888888876 456777777 999999999999888765
No 99
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3.9e-24 Score=200.28 Aligned_cols=265 Identities=17% Similarity=0.260 Sum_probs=212.0
Q ss_pred EEEEeCCCcEEEEEecCCC----------CceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccc
Q 043172 277 LLVAGLDRRLRFFQIDGKR----------NTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPL 346 (564)
Q Consensus 277 l~s~s~dg~I~lwd~~~~~----------~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~ 346 (564)
|++|++...|.=++++... ..++..++.|.++|++++.+ +.++++||.|-+|+|||+.+... +..+
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~q--lg~l 79 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQ--LGIL 79 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhh--hcce
Confidence 6677777777666665322 12245567899999999984 88999999999999999988764 3445
Q ss_pred cccCCcceEEEEEcCCCC--EEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCC
Q 043172 347 VGREEKSLEFFEVSPDSS--VIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRT 423 (564)
Q Consensus 347 ~~~~~~~v~~~~~spdg~--~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~ 423 (564)
..|. ..|+++.|.++-. .|++|+.||.|.+|+.....++.+++ |.+.|+.++++|.+++-++.+.|+.+++||+-.
T Consensus 80 l~Ha-gsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~ 158 (362)
T KOG0294|consen 80 LSHA-GSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVR 158 (362)
T ss_pred eccc-cceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhc
Confidence 5554 4899999999765 89999999999999999999999999 889999999999999999999999999999998
Q ss_pred CceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecC
Q 043172 424 RTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTM 503 (564)
Q Consensus 424 ~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~ 503 (564)
++.-......+. .+.+.|+|.|.+|+.++.+ .|-||.+... .....+... ..+.++.|- ++..|++|..
T Consensus 159 Gr~a~v~~L~~~--at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A-----~v~~~i~~~-~r~l~~~~l-~~~~L~vG~d- 227 (362)
T KOG0294|consen 159 GRVAFVLNLKNK--ATLVSWSPQGDHFVVSGRN-KIDIYQLDNA-----SVFREIENP-KRILCATFL-DGSELLVGGD- 227 (362)
T ss_pred CccceeeccCCc--ceeeEEcCCCCEEEEEecc-EEEEEecccH-----hHhhhhhcc-ccceeeeec-CCceEEEecC-
Confidence 887655554443 3559999999999888877 6889999875 555555432 456677775 4567788887
Q ss_pred CCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEE--eCCCCEEEEEcCCCeEEEEEcCCC
Q 043172 504 KKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDF--SPGGGFMAVGNAAGKVFLYKLNHY 561 (564)
Q Consensus 504 ~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~f--spdg~~Lasgs~dG~V~lw~l~~~ 561 (564)
+..|++||..+..++..+ ..|..+|.++.+ .|++.||++++.||.|+||++..-
T Consensus 228 -~~~i~~~D~ds~~~~~~~---~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 228 -NEWISLKDTDSDTPLTEF---LAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred -CceEEEeccCCCccceee---ecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 899999999987666544 456688988884 467889999999999999998743
No 100
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.8e-25 Score=202.14 Aligned_cols=242 Identities=15% Similarity=0.187 Sum_probs=201.0
Q ss_pred CCCCeeEEEEcCC-CCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEee-CCCEEEEEeCCCeEEEEECCCC
Q 043172 261 STGPINSVQFHRN-AQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLP-DGSQAIIAGRRKFFYSLDLVKA 338 (564)
Q Consensus 261 h~~~V~~l~fspd-g~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fsp-dg~~l~s~~~dg~i~iwdl~~~ 338 (564)
-...+..|+|+++ ...+++++.||+++|||... ...+++.++.|...|.++.|++ .+..+++++.|++|++|+...+
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~-~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~ 137 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTM-PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP 137 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCC-CCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC
Confidence 3568999999995 46888999999999999644 4457888899999999999998 5667778899999999999888
Q ss_pred ceeeeccccccCCcceEEEEEcC-CCCEEEEEeCCCeEEEEECCC-CcEEEEeeecCcEEEEEEec-CCCEEEEEeCCCe
Q 043172 339 KADKIGPLVGREEKSLEFFEVSP-DSSVIAFVGNEGYILLVSSKT-KELIGTLKMNGTVRSLAFAD-DGKQLLSSGGDGQ 415 (564)
Q Consensus 339 ~~~~~~~~~~~~~~~v~~~~~sp-dg~~la~~~~dg~I~lwd~~t-~~~~~~~~~~~~V~~l~~sp-dg~~l~s~s~dg~ 415 (564)
+. +.++.||.. .|...+|+| .++.+++++.||++++||++. ++.+....|+..|.++.|+. +.+.|++|+.|+.
T Consensus 138 ~S--v~Tf~gh~~-~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~ 214 (311)
T KOG0277|consen 138 NS--VQTFNGHNS-CIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNL 214 (311)
T ss_pred cc--eEeecCCcc-EEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCce
Confidence 76 445778776 799999999 578999999999999999985 44444333888999999998 6788999999999
Q ss_pred EEEEECCCCc-eeEEEeecCCcceEEEEECCCC-CEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcC-
Q 043172 416 VYHWDLRTRT-CIHRAVDEGCINGTALCTSPDG-TFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNN- 492 (564)
Q Consensus 416 V~lwD~~~~~-~~~~~~~~~~~~i~~l~~sp~g-~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fsp- 492 (564)
|+.||++.-+ ++..+ ..|...|..+.|||.. ..||+++.|=+++|||.... ...+.+...|+.-+..+.||+
T Consensus 215 vr~wDir~~r~pl~eL-~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~----ds~~e~~~~HtEFv~g~Dws~~ 289 (311)
T KOG0277|consen 215 VRGWDIRNLRTPLFEL-NGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQ----DSAIETVDHHTEFVCGLDWSLF 289 (311)
T ss_pred EEEEehhhccccceee-cCCceEEEEEecCcchhhHhhhccccceEEecccccc----hhhhhhhhccceEEeccccccc
Confidence 9999999854 44444 4566789999999975 48999999999999998743 256667778888999999998
Q ss_pred CCcEEEEEecCCCCeEEEEEc
Q 043172 493 DAQILAICSTMKKNSLKLIHI 513 (564)
Q Consensus 493 dg~~La~~s~~~d~~I~lwdl 513 (564)
++.++|.++. |..++||+.
T Consensus 290 ~~~~vAs~gW--De~l~Vw~p 308 (311)
T KOG0277|consen 290 DPGQVASTGW--DELLYVWNP 308 (311)
T ss_pred cCceeeeccc--ccceeeecc
Confidence 5667888887 999999984
No 101
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=3.7e-25 Score=200.28 Aligned_cols=252 Identities=15% Similarity=0.180 Sum_probs=205.8
Q ss_pred CCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCC-ceeEEEEeCCcCeEEEEEee--CCCEEEEEeCCCeEEEEEC
Q 043172 259 ESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRN-TKIQSIFLEDCPVRKASFLP--DGSQAIIAGRRKFFYSLDL 335 (564)
Q Consensus 259 ~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~-~~~~~~~~~~~~I~~l~fsp--dg~~l~s~~~dg~i~iwdl 335 (564)
..|...|..+...-.|++|||++.|++|+||.+..... ..+..+.+|.+||..++|.. -|..|++++.||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 45999999999999999999999999999999976554 67889999999999999985 7999999999999999999
Q ss_pred CCCceeeeccccccCCcceEEEEEcCC--CCEEEEEeCCCeEEEEECCCC-cEEEE-e--eecCcEEEEEEecC---C--
Q 043172 336 VKAKADKIGPLVGREEKSLEFFEVSPD--SSVIAFVGNEGYILLVSSKTK-ELIGT-L--KMNGTVRSLAFADD---G-- 404 (564)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~v~~~~~spd--g~~la~~~~dg~I~lwd~~t~-~~~~~-~--~~~~~V~~l~~spd---g-- 404 (564)
.+++..+......|.. +|++++|.|. |-.|++++.||.|.|++.++. ..... + .|.-.|++++|.|. |
T Consensus 88 ~~g~w~k~~e~~~h~~-SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~ 166 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSA-SVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL 166 (299)
T ss_pred CCCchhhhhhhhhhcc-cceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence 9998777666666665 8999999996 678999999999999998754 33221 1 28889999999985 4
Q ss_pred ---------CEEEEEeCCCeEEEEECCCCceeE-EEeecCCcceEEEEECCCC----CEEEEEeCCCcEEEEeCCcccCC
Q 043172 405 ---------KQLLSSGGDGQVYHWDLRTRTCIH-RAVDEGCINGTALCTSPDG----TFFAAGSDSGIVNVYNRQEFLGG 470 (564)
Q Consensus 405 ---------~~l~s~s~dg~V~lwD~~~~~~~~-~~~~~~~~~i~~l~~sp~g----~~lasgs~dg~V~iwd~~~~~~~ 470 (564)
+.|++|+.|..|+||+...+.-+. .....|...+..++|.|.- .+||++|+||+|.||-.+.. .
T Consensus 167 ~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e--~ 244 (299)
T KOG1332|consen 167 VDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEE--Y 244 (299)
T ss_pred cccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCc--c
Confidence 569999999999999998764322 2123455578999999974 48999999999999988743 1
Q ss_pred cceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCC
Q 043172 471 KRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPS 515 (564)
Q Consensus 471 ~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s 515 (564)
.+-....+......++++.||+.|.+|+++.+ |+.|.+|.-..
T Consensus 245 e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~G--dNkvtlwke~~ 287 (299)
T KOG1332|consen 245 EPWKKTLLEEFPDVVWRVSWSLSGNILAVSGG--DNKVTLWKENV 287 (299)
T ss_pred CcccccccccCCcceEEEEEeccccEEEEecC--CcEEEEEEeCC
Confidence 12222233445688999999999999999998 99999997653
No 102
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=2.6e-24 Score=219.73 Aligned_cols=279 Identities=12% Similarity=0.185 Sum_probs=231.3
Q ss_pred CCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEE-EEEee-CCCEEEEEeCCCeEEEEE
Q 043172 257 ADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRK-ASFLP-DGSQAIIAGRRKFFYSLD 334 (564)
Q Consensus 257 ~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~-l~fsp-dg~~l~s~~~dg~i~iwd 334 (564)
...+|..-|..+++.+.. .++++|.||++++|.-.++.......+.+|.+.|.+ +++.+ ++-.|++|+.|.++.+|.
T Consensus 9 ~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~ 87 (745)
T KOG0301|consen 9 ELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFK 87 (745)
T ss_pred EeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEe
Confidence 356799999999987654 889999999999998877666666778878887777 88875 555799999999999999
Q ss_pred CCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEeCC
Q 043172 335 LVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGGD 413 (564)
Q Consensus 335 l~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~d 413 (564)
+.+... +..+.+|.. .|.++....++. +++|+.|.++++|-. +++...+. |+..|.++.+.|.+ .+++|+.|
T Consensus 88 ~~~~~P--~~~LkgH~s-nVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaD 160 (745)
T KOG0301|consen 88 LSQAEP--LYTLKGHKS-NVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSAD 160 (745)
T ss_pred cCCCCc--hhhhhcccc-ceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCc
Confidence 988776 556888887 688888777777 899999999999964 55555566 99999999999987 78999999
Q ss_pred CeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCC
Q 043172 414 GQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNND 493 (564)
Q Consensus 414 g~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspd 493 (564)
.+|++|.- ++++.+|..| ...+..+++-+++ .|+++++||.|+.|++.. ..+....+|+.-|+++...++
T Consensus 161 KtIklWk~--~~~l~tf~gH-tD~VRgL~vl~~~-~flScsNDg~Ir~w~~~g------e~l~~~~ghtn~vYsis~~~~ 230 (745)
T KOG0301|consen 161 KTIKLWKG--GTLLKTFSGH-TDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDG------EVLLEMHGHTNFVYSISMALS 230 (745)
T ss_pred ceeeeccC--Cchhhhhccc-hhheeeeEEecCC-CeEeecCCceEEEEeccC------ceeeeeeccceEEEEEEecCC
Confidence 99999986 6778888764 4468899988765 578999999999999954 789999999999999998888
Q ss_pred CcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCCC
Q 043172 494 AQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNHY 561 (564)
Q Consensus 494 g~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~~ 561 (564)
++.+++++. |++++||+...+...-..|+ ..|+++.+-++|. +++|+.||.|+||....-
T Consensus 231 ~~~Ivs~gE--DrtlriW~~~e~~q~I~lPt-----tsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 231 DGLIVSTGE--DRTLRIWKKDECVQVITLPT-----TSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred CCeEEEecC--CceEEEeecCceEEEEecCc-----cceEEEEEeeCCC-EEEeccCceEEEEEeccc
Confidence 999999998 99999999884333332332 4689999999887 678889999999987643
No 103
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=9.1e-25 Score=221.47 Aligned_cols=321 Identities=17% Similarity=0.187 Sum_probs=249.7
Q ss_pred CCCeEEcCCCccCCCeeeeeeeec------ccCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEe
Q 043172 231 DEDLVVKSSAKLSPGLLEYSRLID------ANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFL 304 (564)
Q Consensus 231 ~~~~~~~~~~~l~~~~~d~~rl~~------~~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~ 304 (564)
.++++.+++++-....|++..... +...+.|...|+.++...+++.|+++|.|-+|++|+......-+..++..
T Consensus 36 ~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~ 115 (735)
T KOG0308|consen 36 NGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRT 115 (735)
T ss_pred CCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhc
Confidence 455677777888888888775554 44557799999999999999999999999999999987543356777888
Q ss_pred CCcCeEEEEE-eeCCCEEEEEeCCCeEEEEECCCCce--------eeecccc-ccCCcceEEEEEcCCCCEEEEEeCCCe
Q 043172 305 EDCPVRKASF-LPDGSQAIIAGRRKFFYSLDLVKAKA--------DKIGPLV-GREEKSLEFFEVSPDSSVIAFVGNEGY 374 (564)
Q Consensus 305 ~~~~I~~l~f-spdg~~l~s~~~dg~i~iwdl~~~~~--------~~~~~~~-~~~~~~v~~~~~spdg~~la~~~~dg~ 374 (564)
|...|.|+++ .++...+++||-|+.|.+||++++.. .....+. |+.. +|.+++.++.|..|++|+..+.
T Consensus 116 H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~-siYSLA~N~t~t~ivsGgtek~ 194 (735)
T KOG0308|consen 116 HKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKD-SIYSLAMNQTGTIIVSGGTEKD 194 (735)
T ss_pred ccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcc-ceeeeecCCcceEEEecCcccc
Confidence 9999999999 77888999999999999999998732 1122233 4444 7999999999999999999999
Q ss_pred EEEEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEE
Q 043172 375 ILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAG 453 (564)
Q Consensus 375 I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasg 453 (564)
|++||.++++.+..++ |...|.++-.++||+.+++++.||+|++||+...+|+.++..+.. .+.++..+|+=.++++|
T Consensus 195 lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e-~VWaL~~~~sf~~vYsG 273 (735)
T KOG0308|consen 195 LRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE-GVWALQSSPSFTHVYSG 273 (735)
T ss_pred eEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccC-ceEEEeeCCCcceEEec
Confidence 9999999999888888 999999999999999999999999999999999999999887765 48999999999999999
Q ss_pred eCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCC-------ceeccCCCCC
Q 043172 454 SDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSY-------NVFSNWPPAN 526 (564)
Q Consensus 454 s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~-------~~~~~~~~~~ 526 (564)
+.+|.|..=|+++. .....+-....+|..+..+...+-+-+++. |+.|+-|...-. .+...+....
T Consensus 274 ~rd~~i~~Tdl~n~-----~~~tlick~daPv~~l~~~~~~~~~WvtTt--ds~I~rW~~~~~~~l~~s~~~~~~~T~~~ 346 (735)
T KOG0308|consen 274 GRDGNIYRTDLRNP-----AKSTLICKEDAPVLKLHLHEHDNSVWVTTT--DSSIKRWKLEPDIALSVSGDLDFFSTDSN 346 (735)
T ss_pred CCCCcEEecccCCc-----hhheEeecCCCchhhhhhccccCCceeeec--cccceecCCccccccccCCCCCcccccCC
Confidence 99999999999874 222223334567777777654444455666 788888876421 1111110000
Q ss_pred CC--------------CCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCC
Q 043172 527 RN--------------LQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNH 560 (564)
Q Consensus 527 ~~--------------~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~ 560 (564)
.| ...|...+.-.|-+++++=...|.+.+||+-.
T Consensus 347 ~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~ 394 (735)
T KOG0308|consen 347 NHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWDILA 394 (735)
T ss_pred CccccccCCCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEEeee
Confidence 00 01122333445678999999999999999843
No 104
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=3.2e-24 Score=215.48 Aligned_cols=289 Identities=15% Similarity=0.183 Sum_probs=221.8
Q ss_pred cCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCC--EEEEEeCCCeEEEE
Q 043172 256 NADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGS--QAIIAGRRKFFYSL 333 (564)
Q Consensus 256 ~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~--~l~s~~~dg~i~iw 333 (564)
....+|++.|.||+.+|.|.+|++|+.||+|+||.+.++ .++..+.. .+.|.|++|+|.+. .|+++-.. .+.|.
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~Tg--Rcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~-~~~iv 469 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATG--RCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGE-CVLIV 469 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecc--eEEEEEee-cceeEEEEecCCCCceeEEEEecC-ceEEe
Confidence 345689999999999999999999999999999999854 57766664 45899999999664 33333333 34444
Q ss_pred ECCCCcee-----------------------ee-----------ccccccCCcceEEEEEcCCCCEEEEEeCC---CeEE
Q 043172 334 DLVKAKAD-----------------------KI-----------GPLVGREEKSLEFFEVSPDSSVIAFVGNE---GYIL 376 (564)
Q Consensus 334 dl~~~~~~-----------------------~~-----------~~~~~~~~~~v~~~~~spdg~~la~~~~d---g~I~ 376 (564)
+..-|... .. ..+.-.+.+.|..+.|+..|.||++...+ ..|.
T Consensus 470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl 549 (733)
T KOG0650|consen 470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL 549 (733)
T ss_pred CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence 42222000 00 00111123478899999999999997654 5788
Q ss_pred EEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeC
Q 043172 377 LVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSD 455 (564)
Q Consensus 377 lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~ 455 (564)
|.++........|+ ..+.|.++.|+|...+|++++. ..|++||+.....+..+. .++..+.+++++|.|..|++|+.
T Consensus 550 iHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~-tg~kwiS~msihp~GDnli~gs~ 627 (733)
T KOG0650|consen 550 IHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLL-TGSKWISSMSIHPNGDNLILGSY 627 (733)
T ss_pred EEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHh-cCCeeeeeeeecCCCCeEEEecC
Confidence 99988776666664 6788999999999999998876 579999999877666655 45567899999999999999999
Q ss_pred CCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCc------eeccCCCCCCCC
Q 043172 456 SGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYN------VFSNWPPANRNL 529 (564)
Q Consensus 456 dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~------~~~~~~~~~~~~ 529 (564)
++.+..||+... .+|.+++..|...+++|+|++.-.++++|+. |+++.|++-.-.+ .+..+....+|.
T Consensus 628 d~k~~WfDldls----skPyk~lr~H~~avr~Va~H~ryPLfas~sd--Dgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~ 701 (733)
T KOG0650|consen 628 DKKMCWFDLDLS----SKPYKTLRLHEKAVRSVAFHKRYPLFASGSD--DGTVIVFHGMVYNDLLQNPLIVPLKRLRGHE 701 (733)
T ss_pred CCeeEEEEcccC----cchhHHhhhhhhhhhhhhhccccceeeeecC--CCcEEEEeeeeehhhhcCCceEeeeeccCce
Confidence 999999999864 4899999999999999999999999999998 8999999853221 111122223333
Q ss_pred ----CCcEEEEEeCCCCEEEEEcCCCeEEEE
Q 043172 530 ----QYPRCLDFSPGGGFMAVGNAAGKVFLY 556 (564)
Q Consensus 530 ----~~V~~l~fspdg~~Lasgs~dG~V~lw 556 (564)
..|..+.|+|...+|++++.||+|++|
T Consensus 702 ~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 702 KTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eecccceEeecccCCCceEEecCCCceEEee
Confidence 237888999999999999999999998
No 105
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.93 E-value=3.4e-24 Score=229.64 Aligned_cols=248 Identities=16% Similarity=0.198 Sum_probs=208.2
Q ss_pred CCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecC----C------------CCceeEEEEeCCcCeEEEEEeeCCCEE
Q 043172 258 DESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDG----K------------RNTKIQSIFLEDCPVRKASFLPDGSQA 321 (564)
Q Consensus 258 ~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~----~------------~~~~~~~~~~~~~~I~~l~fspdg~~l 321 (564)
...|.++|+|+.|+|||++||+||.|+.|.||.... . ....+..+.+|...|..++|+|++.+|
T Consensus 65 m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~l 144 (942)
T KOG0973|consen 65 MDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLL 144 (942)
T ss_pred eccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEE
Confidence 456999999999999999999999999999999872 0 123566788899999999999999999
Q ss_pred EEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-------ecCc
Q 043172 322 IIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-------MNGT 394 (564)
Q Consensus 322 ~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-------~~~~ 394 (564)
++++.|++|.||+..+... +..+.+|+. .|..+.|.|-|+|||+-+.|++|++|.+.+....+.+. ....
T Consensus 145 vS~s~DnsViiwn~~tF~~--~~vl~~H~s-~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~ 221 (942)
T KOG0973|consen 145 VSVSLDNSVIIWNAKTFEL--LKVLRGHQS-LVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTF 221 (942)
T ss_pred EEecccceEEEEcccccee--eeeeecccc-cccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcce
Confidence 9999999999999999854 455788887 79999999999999999999999999987766666554 2346
Q ss_pred EEEEEEecCCCEEEEEeC----CCeEEEEECCCCceeEEEeecCCcceEEEEECCC-------------CC----EEEEE
Q 043172 395 VRSLAFADDGKQLLSSGG----DGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPD-------------GT----FFAAG 453 (564)
Q Consensus 395 V~~l~~spdg~~l~s~s~----dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~-------------g~----~lasg 453 (564)
+..+.|+|||.+|++... -..+.|.+-.+-++-..+.+|.. ++.+++|+|. .. .+|+|
T Consensus 222 f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~-p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~Avg 300 (942)
T KOG0973|consen 222 FLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSA-PVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVG 300 (942)
T ss_pred eeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCC-ceEEEEeChHHhccccccCCccCCCcceEEEEEe
Confidence 789999999999998743 34688888777776666766655 8999999971 11 67899
Q ss_pred eCCCcEEEEeCCcccCCcceeeEEccc-cccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCC
Q 043172 454 SDSGIVNVYNRQEFLGGKRKPIKTIEN-LTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSY 516 (564)
Q Consensus 454 s~dg~V~iwd~~~~~~~~~~~~~~~~~-~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~ 516 (564)
|.|++|.||..... +|+..+.. ....|..++|+|||-.|+++|. ||+|.++++...
T Consensus 301 SqDrSlSVW~T~~~-----RPl~vi~~lf~~SI~DmsWspdG~~LfacS~--DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 301 SQDRSLSVWNTALP-----RPLFVIHNLFNKSIVDMSWSPDGFSLFACSL--DGTVALIHFEEK 357 (942)
T ss_pred cCCccEEEEecCCC-----CchhhhhhhhcCceeeeeEcCCCCeEEEEec--CCeEEEEEcchH
Confidence 99999999999765 88777654 3578999999999999999999 999999998753
No 106
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=5.4e-24 Score=199.11 Aligned_cols=287 Identities=14% Similarity=0.181 Sum_probs=218.5
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeec
Q 043172 265 INSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIG 344 (564)
Q Consensus 265 V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~ 344 (564)
-.|+.|++.|.+||+|..+|.|.|||+.+. ..-..+.+|-.||.+++||++|+.|+++++|..|.+||+..|.+.+..
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~--~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri 103 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTF--RIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI 103 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEcccc--chhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE
Confidence 789999999999999999999999999854 355667789999999999999999999999999999999999875543
Q ss_pred cccccCCcceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCcEEEEee------ecCcEEEEEEecCCCEEEEEeCCCeEE
Q 043172 345 PLVGREEKSLEFFEVSPDSSVIAFVG-NEGYILLVSSKTKELIGTLK------MNGTVRSLAFADDGKQLLSSGGDGQVY 417 (564)
Q Consensus 345 ~~~~~~~~~v~~~~~spdg~~la~~~-~dg~I~lwd~~t~~~~~~~~------~~~~V~~l~~spdg~~l~s~s~dg~V~ 417 (564)
.+. .+|+.+.|+|-....++++ .+..-.+.++..+.. ..+. .+....+..|.+.|+++++|...|.+.
T Consensus 104 rf~----spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkll 178 (405)
T KOG1273|consen 104 RFD----SPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-SVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLL 178 (405)
T ss_pred Ecc----CccceeeeccccCCeEEEEEecCCcEEEEecCCce-eeccCCCccccccccccccccCCCCEEEEecCcceEE
Confidence 332 3799999999544333332 233344444443221 1111 122334456899999999999999999
Q ss_pred EEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCccc----CCcceeeEEccc--cccceeEEEEc
Q 043172 418 HWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFL----GGKRKPIKTIEN--LTTKVDFMKFN 491 (564)
Q Consensus 418 lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~----~~~~~~~~~~~~--~~~~I~~l~fs 491 (564)
++|..+.+|+..+.......|..+.++..|++|++-+.|..|+.|+++... .+.+.+.+.+.. ....-.+++|+
T Consensus 179 v~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs 258 (405)
T KOG1273|consen 179 VYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFS 258 (405)
T ss_pred EEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeec
Confidence 999999999988876665678899999999999999999999999987431 123333333321 12344678999
Q ss_pred CCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCCCC
Q 043172 492 NDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNHYH 562 (564)
Q Consensus 492 pdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~~~ 562 (564)
.+|.|++.++.. -..++||.-..|..++.+....+ .....+.|+|-...+++- ..|.|+||...+..
T Consensus 259 ~dgeYv~a~s~~-aHaLYIWE~~~GsLVKILhG~kg--E~l~DV~whp~rp~i~si-~sg~v~iw~~~~~e 325 (405)
T KOG1273|consen 259 GDGEYVCAGSAR-AHALYIWEKSIGSLVKILHGTKG--EELLDVNWHPVRPIIASI-ASGVVYIWAVVQVE 325 (405)
T ss_pred CCccEEEecccc-ceeEEEEecCCcceeeeecCCch--hheeecccccceeeeeec-cCCceEEEEeeccc
Confidence 999999988853 68999999999999886544432 345678899987777766 78999999986543
No 107
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=4.5e-25 Score=209.84 Aligned_cols=311 Identities=14% Similarity=0.169 Sum_probs=244.4
Q ss_pred cchHHHHHHHHHH-HHhhCCCCccccccccCCCCCCCCCCCchhhhhhhhcCCCChhhHHhhcccCCCeEEcCCCccCCC
Q 043172 167 ISGAEYVSRLRAQ-HVKLNPGTEWAQLDSRSRDNDPYDESSDEETQAVVACGYEDTEAVDDILRTDEDLVVKSSAKLSPG 245 (564)
Q Consensus 167 ~~~~ey~~rLr~~-~~~~~~~p~wa~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~l~~~ 245 (564)
...+||.+.|.+. .+|++..|.-+.+...+. .+.|...++..|..++..+. +....
T Consensus 36 e~~rEy~RALNAtKleR~fakPFv~~L~gHrd---------------GV~~lakhp~~ls~~aSGs~--------DG~Vk 92 (433)
T KOG0268|consen 36 ERAREYTRALNATKLERVFAKPFVGSLDGHRD---------------GVSCLAKHPNKLSTVASGSC--------DGEVK 92 (433)
T ss_pred hhHHHHHHHhhhHHHHHHhhccchhhcccccc---------------ccchhhcCcchhhhhhcccc--------CceEE
Confidence 4558999999966 899999999998855431 25667777777666665444 44556
Q ss_pred eeeeeeeecccCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEe
Q 043172 246 LLEYSRLIDANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAG 325 (564)
Q Consensus 246 ~~d~~rl~~~~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~ 325 (564)
+|++.......+..+|.+.|..|+++. ..++++|.|++|+.|.+++. ++.++.+ .+.+..+.-+..++.+++||
T Consensus 93 iWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~---p~~tilg-~s~~~gIdh~~~~~~FaTcG 166 (433)
T KOG0268|consen 93 IWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGP---PLHTILG-KSVYLGIDHHRKNSVFATCG 166 (433)
T ss_pred EEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCC---cceeeec-cccccccccccccccccccC
Confidence 899988888888999999999999997 67889999999999999863 5666554 45666777666677788877
Q ss_pred CCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEEEEeeecCcEEEEEEecCC
Q 043172 326 RRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDS-SVIAFVGNEGYILLVSSKTKELIGTLKMNGTVRSLAFADDG 404 (564)
Q Consensus 326 ~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg-~~la~~~~dg~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg 404 (564)
. .|.|||.....+.+. +.-.. ..|.++.|+|.. ..|++++.|+.|.|||++++.++..+.....-+.|+|+|.+
T Consensus 167 e--~i~IWD~~R~~Pv~s--mswG~-Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPea 241 (433)
T KOG0268|consen 167 E--QIDIWDEQRDNPVSS--MSWGA-DSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEA 241 (433)
T ss_pred c--eeeecccccCCccce--eecCC-CceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccc
Confidence 5 499999977665332 32222 268999999964 56778889999999999999999988888888999999988
Q ss_pred CEEEEEeCCCeEEEEECCCCc-eeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEcccccc
Q 043172 405 KQLLSSGGDGQVYHWDLRTRT-CIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTT 483 (564)
Q Consensus 405 ~~l~s~s~dg~V~lwD~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~ 483 (564)
-.+++|+.|..++.||++... ++..+. .+...+..+.|||.|+-|++||.|.+|+||..+.+ ......++- ...
T Consensus 242 fnF~~a~ED~nlY~~DmR~l~~p~~v~~-dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~--~SRdiYhtk--RMq 316 (433)
T KOG0268|consen 242 FNFVAANEDHNLYTYDMRNLSRPLNVHK-DHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHG--HSRDIYHTK--RMQ 316 (433)
T ss_pred cceeeccccccceehhhhhhcccchhhc-ccceeEEEeccCCCcchhccccccceEEEeecCCC--cchhhhhHh--hhh
Confidence 889999999999999999754 344444 44457999999999999999999999999999875 111111111 235
Q ss_pred ceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCce
Q 043172 484 KVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNV 518 (564)
Q Consensus 484 ~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~ 518 (564)
.|.++.||.|.+++++||. |+.||||.......
T Consensus 317 ~V~~Vk~S~Dskyi~SGSd--d~nvRlWka~Asek 349 (433)
T KOG0268|consen 317 HVFCVKYSMDSKYIISGSD--DGNVRLWKAKASEK 349 (433)
T ss_pred eeeEEEEeccccEEEecCC--Ccceeeeecchhhh
Confidence 7899999999999999998 99999999765443
No 108
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.2e-23 Score=221.21 Aligned_cols=278 Identities=15% Similarity=0.219 Sum_probs=223.2
Q ss_pred CCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCC
Q 043172 259 ESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKA 338 (564)
Q Consensus 259 ~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~ 338 (564)
.+|+..-+.|+|.|+|.+|++++.||.|++|+..... ....++..+...|.+++- .+++|++|+.+++|.+|.+..+
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~-e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDE-EEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcc-cCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCC
Confidence 3599999999999999999999999999999875431 122223335666766665 4669999999999999999988
Q ss_pred ceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEeCCCeEE
Q 043172 339 KADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQVY 417 (564)
Q Consensus 339 ~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~V~ 417 (564)
....+ .....-++.+++|+-+|+++|.|+.|-.|++.++.+......++ |.++|.++.|+|.+.+|++.+.||.|+
T Consensus 87 ~~~~i---L~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~ 163 (933)
T KOG1274|consen 87 EEDTI---LARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQ 163 (933)
T ss_pred Cccce---eeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEE
Confidence 75422 22222378999999999999999999999999999888888887 999999999999999999999999999
Q ss_pred EEECCCCceeEEEeec-------CCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEcc--ccccceeEE
Q 043172 418 HWDLRTRTCIHRAVDE-------GCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIE--NLTTKVDFM 488 (564)
Q Consensus 418 lwD~~~~~~~~~~~~~-------~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~--~~~~~I~~l 488 (564)
+|++.++.+...+..- ....++.++|+|+|..+++.+.++.|.+|+...+ .+...+. .+.+.++.+
T Consensus 164 iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~w-----e~~f~Lr~~~~ss~~~~~ 238 (933)
T KOG1274|consen 164 IWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGW-----ELQFKLRDKLSSSKFSDL 238 (933)
T ss_pred EEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCc-----eeheeecccccccceEEE
Confidence 9999998877665431 1234678899999888888899999999999987 6666654 234459999
Q ss_pred EEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEE
Q 043172 489 KFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLY 556 (564)
Q Consensus 489 ~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw 556 (564)
+|+|.|+|||+++- +|.|-|||+.+-.. ......|++++|-|++..+-.-...|...+|
T Consensus 239 ~wsPnG~YiAAs~~--~g~I~vWnv~t~~~-------~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 239 QWSPNGKYIAASTL--DGQILVWNVDTHER-------HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred EEcCCCcEEeeecc--CCcEEEEecccchh-------ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 99999999999998 99999999987221 2233679999999998876655555554443
No 109
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=1.1e-23 Score=195.28 Aligned_cols=294 Identities=16% Similarity=0.218 Sum_probs=220.1
Q ss_pred cCCCCCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEEecCCCCc----------e---eEEEEeCCcCeEEEEEee-CCCE
Q 043172 256 NADESSTGPINSVQFHR-NAQLLLVAGLDRRLRFFQIDGKRNT----------K---IQSIFLEDCPVRKASFLP-DGSQ 320 (564)
Q Consensus 256 ~~~~~h~~~V~~l~fsp-dg~~l~s~s~dg~I~lwd~~~~~~~----------~---~~~~~~~~~~I~~l~fsp-dg~~ 320 (564)
....+|.+.|+++.+.+ .|+++++|+.||.|.|||+...... + .+.-.+|...|..+.|-| |...
T Consensus 37 d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGm 116 (397)
T KOG4283|consen 37 DFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGM 116 (397)
T ss_pred ceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCce
Confidence 34567999999999999 6899999999999999999653310 0 111235788899999999 6667
Q ss_pred EEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCC---CCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEE
Q 043172 321 AIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPD---SSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVR 396 (564)
Q Consensus 321 l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spd---g~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~ 396 (564)
+.+++.|.+++|||.++-+......+.+ .|.+-++||- ..++|+|..+-.|++.|+.+|.+.+++. |.+.|.
T Consensus 117 FtssSFDhtlKVWDtnTlQ~a~~F~me~----~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vl 192 (397)
T KOG4283|consen 117 FTSSSFDHTLKVWDTNTLQEAVDFKMEG----KVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVL 192 (397)
T ss_pred eecccccceEEEeecccceeeEEeecCc----eeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceE
Confidence 7788899999999999988765544433 4777788873 4578888889999999999999999999 999999
Q ss_pred EEEEecCCC-EEEEEeCCCeEEEEECCCC-ceeEEEe-------------ecCCcceEEEEECCCCCEEEEEeCCCcEEE
Q 043172 397 SLAFADDGK-QLLSSGGDGQVYHWDLRTR-TCIHRAV-------------DEGCINGTALCTSPDGTFFAAGSDSGIVNV 461 (564)
Q Consensus 397 ~l~~spdg~-~l~s~s~dg~V~lwD~~~~-~~~~~~~-------------~~~~~~i~~l~~sp~g~~lasgs~dg~V~i 461 (564)
++.|+|... .|++|+.||.|++||++.- .|...+. ..+...+..+||+.++.++++++.|..+++
T Consensus 193 aV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~ 272 (397)
T KOG4283|consen 193 AVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRV 272 (397)
T ss_pred EEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEE
Confidence 999999665 5778899999999999864 3433332 123446789999999999999999999999
Q ss_pred EeCCcccCCcceeeEEccccc-cceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCC
Q 043172 462 YNRQEFLGGKRKPIKTIENLT-TKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPG 540 (564)
Q Consensus 462 wd~~~~~~~~~~~~~~~~~~~-~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspd 540 (564)
|+...+.+........+.+.. ..-..+. +-+...++.--. ++.+.++.+-++..+..|.++ ...|.|.+|.|+
T Consensus 273 wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~--~~~lall~~~sgs~ir~l~~h---~k~i~c~~~~~~ 346 (397)
T KOG4283|consen 273 WNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPN--DGSLALLNLLEGSFVRRLSTH---LKRINCAAYRPD 346 (397)
T ss_pred eecccCcccccccccccccccccceEEEe-ecccceEEEEec--CCeEEEEEccCceEEEeeecc---cceeeEEeecCc
Confidence 999876321111111111111 1111122 333333333333 688899999888888766554 577999999999
Q ss_pred CCEEEEEcCCCeEEEEEcC
Q 043172 541 GGFMAVGNAAGKVFLYKLN 559 (564)
Q Consensus 541 g~~Lasgs~dG~V~lw~l~ 559 (564)
-+.+.+|..|+.|..|-..
T Consensus 347 fq~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 347 FEQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred hhhhhccccCCcccccccc
Confidence 9999999999999999763
No 110
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=8.1e-24 Score=215.92 Aligned_cols=285 Identities=13% Similarity=0.156 Sum_probs=224.0
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEEecCC-CCceeEEEEeCCcCeEEEEEeeC-----------CCEEEEEeCCCeEEE
Q 043172 265 INSVQFHRNAQLLLVAGLDRRLRFFQIDGK-RNTKIQSIFLEDCPVRKASFLPD-----------GSQAIIAGRRKFFYS 332 (564)
Q Consensus 265 V~~l~fspdg~~l~s~s~dg~I~lwd~~~~-~~~~~~~~~~~~~~I~~l~fspd-----------g~~l~s~~~dg~i~i 332 (564)
.-++.|.|....|.+.-.|..|+|||+... +..+..++-.|...|+.+.--|. ...+++++.|++|++
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRl 406 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRL 406 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEE
Confidence 346789999999999999999999999642 33345556667777777665441 135889999999999
Q ss_pred EECCCCceeee---cc--------------------------------ccccCCcceEEEEEcCCCCEEEEEeCCCeEEE
Q 043172 333 LDLVKAKADKI---GP--------------------------------LVGREEKSLEFFEVSPDSSVIAFVGNEGYILL 377 (564)
Q Consensus 333 wdl~~~~~~~~---~~--------------------------------~~~~~~~~v~~~~~spdg~~la~~~~dg~I~l 377 (564)
|++..+....+ .. ..+ ....+.++++||+|++||+|..-|.++|
T Consensus 407 W~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d-~r~G~R~~~vSp~gqhLAsGDr~GnlrV 485 (1080)
T KOG1408|consen 407 WDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCD-SRFGFRALAVSPDGQHLASGDRGGNLRV 485 (1080)
T ss_pred eecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcC-cccceEEEEECCCcceecccCccCceEE
Confidence 99986321111 00 001 1135899999999999999999999999
Q ss_pred EECCCCcEEEEee-ecCcEEEEEEec---CCCEEEEEeCCCeEEEEECCCCceeEEEeecC-------------------
Q 043172 378 VSSKTKELIGTLK-MNGTVRSLAFAD---DGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEG------------------- 434 (564)
Q Consensus 378 wd~~t~~~~~~~~-~~~~V~~l~~sp---dg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~------------------- 434 (564)
|++........+. |...|.|+.|+- ..++|++++.|..|.+||+...-.+....+.|
T Consensus 486 y~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~Mi 565 (1080)
T KOG1408|consen 486 YDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMI 565 (1080)
T ss_pred EEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEE
Confidence 9999888887777 999999999985 34789999999999999986432111111111
Q ss_pred ------------------------------CcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEcc---cc
Q 043172 435 ------------------------------CINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIE---NL 481 (564)
Q Consensus 435 ------------------------------~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~---~~ 481 (564)
...+..+++.|+.+++++++.|..|+||++..+ +..+.|+ .|
T Consensus 566 scGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sg-----Kq~k~FKgs~~~ 640 (1080)
T KOG1408|consen 566 SCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESG-----KQVKSFKGSRDH 640 (1080)
T ss_pred eccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEecccc-----ceeeeecccccC
Confidence 113456777788899999999999999999998 7777775 46
Q ss_pred ccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCC
Q 043172 482 TTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNH 560 (564)
Q Consensus 482 ~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~ 560 (564)
.+....+...|.|.|||+.+. |.++.++|+.+++++... .+|...|+.+.|++|.+.|++.+.||.|.||.+.+
T Consensus 641 eG~lIKv~lDPSgiY~atScs--dktl~~~Df~sgEcvA~m---~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 641 EGDLIKVILDPSGIYLATSCS--DKTLCFVDFVSGECVAQM---TGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred CCceEEEEECCCccEEEEeec--CCceEEEEeccchhhhhh---cCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 677888999999999999998 899999999999998754 45668899999999999999999999999999864
No 111
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.93 E-value=9.3e-23 Score=204.38 Aligned_cols=258 Identities=17% Similarity=0.246 Sum_probs=193.4
Q ss_pred CeeEEEEcCCCCEE-EEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEe-CCCeEEEEECCCCcee
Q 043172 264 PINSVQFHRNAQLL-LVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAG-RRKFFYSLDLVKAKAD 341 (564)
Q Consensus 264 ~V~~l~fspdg~~l-~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~-~dg~i~iwdl~~~~~~ 341 (564)
.+.+++|+|++..+ ++++.++.|++|++... ..+..+..+. .+..++|+|+++.+++++ .++.+++||+.+++..
T Consensus 32 ~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~--~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~ 108 (300)
T TIGR03866 32 RPRGITLSKDGKLLYVCASDSDTIQVIDLATG--EVIGTLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKVL 108 (300)
T ss_pred CCCceEECCCCCEEEEEECCCCeEEEEECCCC--cEEEeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEE
Confidence 46789999999876 56677899999998743 3444454443 356789999999887654 5789999999987653
Q ss_pred eeccccccCCcceEEEEEcCCCCEEEEEeCCC-eEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEEe-CCCeEEEE
Q 043172 342 KIGPLVGREEKSLEFFEVSPDSSVIAFVGNEG-YILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSG-GDGQVYHW 419 (564)
Q Consensus 342 ~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg-~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s-~dg~V~lw 419 (564)
.. +... ..+.+++|+|+|.+++++..++ .+.+||..+++....+.....+.+++|+|++++|++++ .++.|++|
T Consensus 109 ~~--~~~~--~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~ 184 (300)
T TIGR03866 109 AE--IPVG--VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVI 184 (300)
T ss_pred eE--eeCC--CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEE
Confidence 32 2211 1357899999999999888764 57788999888776665555678899999999886554 58999999
Q ss_pred ECCCCceeEEEeec------CCcceEEEEECCCCCEEEEE-eCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcC
Q 043172 420 DLRTRTCIHRAVDE------GCINGTALCTSPDGTFFAAG-SDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNN 492 (564)
Q Consensus 420 D~~~~~~~~~~~~~------~~~~i~~l~~sp~g~~lasg-s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fsp 492 (564)
|+.+++++..+... .......++|+|++++++++ +.++.|.+||+.++ +.+..+. +...+.+++|+|
T Consensus 185 d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~-----~~~~~~~-~~~~~~~~~~~~ 258 (300)
T TIGR03866 185 DVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY-----EVLDYLL-VGQRVWQLAFTP 258 (300)
T ss_pred EcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC-----cEEEEEE-eCCCcceEEECC
Confidence 99998877665422 11223568899999975543 45678999999875 5544443 345789999999
Q ss_pred CCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeC
Q 043172 493 DAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSP 539 (564)
Q Consensus 493 dg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fsp 539 (564)
+|++|++++.. ++.|++||+.+++++..++.. ..++.++|+|
T Consensus 259 ~g~~l~~~~~~-~~~i~v~d~~~~~~~~~~~~~----~~~~~~~~~~ 300 (300)
T TIGR03866 259 DEKYLLTTNGV-SNDVSVIDVAALKVIKSIKVG----RLPWGVVVRP 300 (300)
T ss_pred CCCEEEEEcCC-CCeEEEEECCCCcEEEEEEcc----cccceeEeCC
Confidence 99999887532 789999999999988877653 4457888875
No 112
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=7.7e-23 Score=183.03 Aligned_cols=248 Identities=17% Similarity=0.217 Sum_probs=202.2
Q ss_pred CCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCce---eEEEEeCCcCeEEEEEee----CCCEEEEEe-CCCeE
Q 043172 259 ESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTK---IQSIFLEDCPVRKASFLP----DGSQAIIAG-RRKFF 330 (564)
Q Consensus 259 ~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~---~~~~~~~~~~I~~l~fsp----dg~~l~s~~-~dg~i 330 (564)
..|.+.|+|.+|+|+|.+|++|+.|++|++.-++..++.. -..+.-|.+.|..++|.. .|..|++++ .|..|
T Consensus 86 khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~i 165 (350)
T KOG0641|consen 86 KHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKI 165 (350)
T ss_pred cccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceE
Confidence 3489999999999999999999999999998776444322 234667899999999974 345666665 56778
Q ss_pred EEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee---e-----cCcEEEEEEec
Q 043172 331 YSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK---M-----NGTVRSLAFAD 402 (564)
Q Consensus 331 ~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~---~-----~~~V~~l~~sp 402 (564)
++-|..+|+. ...+.+|......- ++-+|-++++|+.|.+|++||++-..++.++. | ...|.+++..|
T Consensus 166 y~tdc~~g~~--~~a~sghtghilal--yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdp 241 (350)
T KOG0641|consen 166 YITDCGRGQG--FHALSGHTGHILAL--YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDP 241 (350)
T ss_pred EEeecCCCCc--ceeecCCcccEEEE--EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECC
Confidence 8888888875 44577777643333 34468899999999999999999998888875 3 24699999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccc
Q 043172 403 DGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLT 482 (564)
Q Consensus 403 dg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~ 482 (564)
.|++|++|-.|....+||++.++.++++..+. ..|.++.|+|...|+++|+.|..|++-|+.... ...-++.....|.
T Consensus 242 sgrll~sg~~dssc~lydirg~r~iq~f~phs-adir~vrfsp~a~yllt~syd~~ikltdlqgdl-a~el~~~vv~ehk 319 (350)
T KOG0641|consen 242 SGRLLASGHADSSCMLYDIRGGRMIQRFHPHS-ADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDL-AHELPIMVVAEHK 319 (350)
T ss_pred CcceeeeccCCCceEEEEeeCCceeeeeCCCc-cceeEEEeCCCceEEEEecccceEEEeecccch-hhcCceEEEEecc
Confidence 99999999999999999999999999988655 479999999999999999999999999997642 1224555666788
Q ss_pred cceeEEEEcCCCcEEEEEecCCCCeEEEEEcC
Q 043172 483 TKVDFMKFNNDAQILAICSTMKKNSLKLIHIP 514 (564)
Q Consensus 483 ~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~ 514 (564)
..+..+.|+|..-.+++.|. |.++.+|-++
T Consensus 320 dk~i~~rwh~~d~sfisssa--dkt~tlwa~~ 349 (350)
T KOG0641|consen 320 DKAIQCRWHPQDFSFISSSA--DKTATLWALN 349 (350)
T ss_pred CceEEEEecCccceeeeccC--cceEEEeccC
Confidence 88999999999877888887 8999999764
No 113
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=2e-24 Score=195.54 Aligned_cols=251 Identities=15% Similarity=0.146 Sum_probs=203.4
Q ss_pred EeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCce-eeeccccccCCcceEEEEEcC--CCCEEEEEeCCCeEEEEE
Q 043172 303 FLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKA-DKIGPLVGREEKSLEFFEVSP--DSSVIAFVGNEGYILLVS 379 (564)
Q Consensus 303 ~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~-~~~~~~~~~~~~~v~~~~~sp--dg~~la~~~~dg~I~lwd 379 (564)
..|...|+.+...--|++|++++.|++|+|+....... ..+..+.||.. +|..++|.. -|.+||+++.||.|.||.
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~G-PVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSG-PVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCC-CeeEEeecccccCcEeeEeecCceEEEEe
Confidence 35777788877777899999999999999999987654 56677889887 899999976 799999999999999999
Q ss_pred CCCCcEEEEee---ecCcEEEEEEecC--CCEEEEEeCCCeEEEEECCCC--ceeEEEeecCCcceEEEEECCC---C--
Q 043172 380 SKTKELIGTLK---MNGTVRSLAFADD--GKQLLSSGGDGQVYHWDLRTR--TCIHRAVDEGCINGTALCTSPD---G-- 447 (564)
Q Consensus 380 ~~t~~~~~~~~---~~~~V~~l~~spd--g~~l~s~s~dg~V~lwD~~~~--~~~~~~~~~~~~~i~~l~~sp~---g-- 447 (564)
-.++++..... |...|++++|.|. |-.|++++.||.|.+.+.+.. -...++...|..++++++|.|. |
T Consensus 87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~ 166 (299)
T KOG1332|consen 87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL 166 (299)
T ss_pred cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence 98887655444 8899999999995 568999999999999998764 3344555677888999999986 4
Q ss_pred ---------CEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCC----cEEEEEecCCCCeEEEEEcC
Q 043172 448 ---------TFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDA----QILAICSTMKKNSLKLIHIP 514 (564)
Q Consensus 448 ---------~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg----~~La~~s~~~d~~I~lwdl~ 514 (564)
+.|++|+.|..|+||..... ....-+++.+|...|..++|.|.- .+||++|. |++|.||...
T Consensus 167 ~~~~~~~~~krlvSgGcDn~VkiW~~~~~---~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~Sq--Dg~viIwt~~ 241 (299)
T KOG1332|consen 167 VDQGPAAKVKRLVSGGCDNLVKIWKFDSD---SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQ--DGTVIIWTKD 241 (299)
T ss_pred cccCcccccceeeccCCccceeeeecCCc---chhhhhhhhhcchhhhhhhhccccCCCceeeEEecC--CCcEEEEEec
Confidence 56999999999999999873 445666799999999999999964 56888888 9999999886
Q ss_pred CCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q 043172 515 SYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLN 559 (564)
Q Consensus 515 s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~ 559 (564)
.-...-.......-...+..+.||+.|.+|++++.|.+|.+|.-+
T Consensus 242 ~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 242 EEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred CccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 321111111112223568999999999999999999999999754
No 114
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.92 E-value=7.6e-24 Score=207.09 Aligned_cols=304 Identities=15% Similarity=0.188 Sum_probs=227.8
Q ss_pred eeeecccCCCCCCCCeeEEEEcCCC--CEEEEEeCCCcEEEEEec--CCCCceeEEEEeCCcCeEEEEEee-CCCEEEEE
Q 043172 250 SRLIDANADESSTGPINSVQFHRNA--QLLLVAGLDRRLRFFQID--GKRNTKIQSIFLEDCPVRKASFLP-DGSQAIIA 324 (564)
Q Consensus 250 ~rl~~~~~~~~h~~~V~~l~fspdg--~~l~s~s~dg~I~lwd~~--~~~~~~~~~~~~~~~~I~~l~fsp-dg~~l~s~ 324 (564)
-.+...+....|.++|++++|||.. +++|+|..-|+|-+|++. ......+..+..|..+|.++.|+| +...+++.
T Consensus 174 ~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ss 253 (498)
T KOG4328|consen 174 DDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSS 253 (498)
T ss_pred ccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeee
Confidence 3445555667799999999999965 588899999999999996 344556777788999999999999 55789999
Q ss_pred eCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE-EEEee-ecCcEEEEEEec
Q 043172 325 GRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKEL-IGTLK-MNGTVRSLAFAD 402 (564)
Q Consensus 325 ~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~-~~~~~-~~~~V~~l~~sp 402 (564)
+.||+|++-|++++....+..+.. ....+..+.|+.....++++..-|...+||++++.. ...+. |...|++++++|
T Consensus 254 SyDGtiR~~D~~~~i~e~v~s~~~-d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP 332 (498)
T KOG4328|consen 254 SYDGTIRLQDFEGNISEEVLSLDT-DNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNP 332 (498)
T ss_pred ccCceeeeeeecchhhHHHhhcCc-cceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCC
Confidence 999999999999887554443321 234677888998888888888888999999998765 44444 778999999999
Q ss_pred C-CCEEEEEeCCCeEEEEECCCCceeE---EEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEc
Q 043172 403 D-GKQLLSSGGDGQVYHWDLRTRTCIH---RAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTI 478 (564)
Q Consensus 403 d-g~~l~s~s~dg~V~lwD~~~~~~~~---~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~ 478 (564)
. ..+|+++|.|++++|||++.-.... .....|...|.+.+|||.+..|++.+.|..|+|||..-. +....|+.++
T Consensus 333 ~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~-sa~~~p~~~I 411 (498)
T KOG4328|consen 333 VCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCI-SAKDEPLGTI 411 (498)
T ss_pred CCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccc-cccCCcccee
Confidence 4 5688999999999999998633222 122345667899999999888999999999999998511 1122455554
Q ss_pred cccc---c--ceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcE-EEEEeCCCC-EEEEEcCCC
Q 043172 479 ENLT---T--KVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPR-CLDFSPGGG-FMAVGNAAG 551 (564)
Q Consensus 479 ~~~~---~--~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~-~l~fspdg~-~Lasgs~dG 551 (564)
.... . ......|.|+..++++|.. ...|-|+|-..++.+..+-... ...|. -..|+|-+. +++.|+..|
T Consensus 412 ~Hn~~t~RwlT~fKA~W~P~~~li~vg~~--~r~IDv~~~~~~q~v~el~~P~--~~tI~~vn~~HP~~~~~~aG~~s~G 487 (498)
T KOG4328|consen 412 PHNNRTGRWLTPFKAAWDPDYNLIVVGRY--PRPIDVFDGNGGQMVCELHDPE--SSTIPSVNEFHPMRDTLAAGGNSSG 487 (498)
T ss_pred eccCcccccccchhheeCCCccEEEEecc--CcceeEEcCCCCEEeeeccCcc--ccccccceeecccccceeccCCccc
Confidence 3111 1 2345789999999999988 7789999998888655432211 11233 357999877 555666889
Q ss_pred eEEEEEcC
Q 043172 552 KVFLYKLN 559 (564)
Q Consensus 552 ~V~lw~l~ 559 (564)
.|+||.-.
T Consensus 488 ki~vft~k 495 (498)
T KOG4328|consen 488 KIYVFTNK 495 (498)
T ss_pred eEEEEecC
Confidence 99999643
No 115
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=7e-24 Score=207.62 Aligned_cols=253 Identities=19% Similarity=0.228 Sum_probs=209.6
Q ss_pred eEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCcee-eecc-------------cc-ccCCcceEEEEEcCCC
Q 043172 299 IQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKAD-KIGP-------------LV-GREEKSLEFFEVSPDS 363 (564)
Q Consensus 299 ~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~-~~~~-------------~~-~~~~~~v~~~~~spdg 363 (564)
+..+..|..+|.+++++|++.++++++.+++|.-|++.++... .+.. .. ..+.+.+.++++|+||
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 3445568889999999999999999999999999999988743 1100 11 0223468899999999
Q ss_pred CEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEE
Q 043172 364 SVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALC 442 (564)
Q Consensus 364 ~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~ 442 (564)
+|||+|+.|..|.||+..+.+.+..++ |.+.|.+++|-.....|++++.|+.|++|++.....+.++..|+. .|..|.
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd-~v~~Id 293 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQD-GVLGID 293 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCcc-ceeeec
Confidence 999999999999999999999999988 899999999998888999999999999999998888877776655 678887
Q ss_pred ECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccC
Q 043172 443 TSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNW 522 (564)
Q Consensus 443 ~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~ 522 (564)
...-++.+.+|+.|+++++|++.. .....+.++.+.+-|++|-.+ ..+++||. +|.|.||++...+++...
T Consensus 294 aL~reR~vtVGgrDrT~rlwKi~e------esqlifrg~~~sidcv~~In~-~HfvsGSd--nG~IaLWs~~KKkplf~~ 364 (479)
T KOG0299|consen 294 ALSRERCVTVGGRDRTVRLWKIPE------ESQLIFRGGEGSIDCVAFIND-EHFVSGSD--NGSIALWSLLKKKPLFTS 364 (479)
T ss_pred hhcccceEEeccccceeEEEeccc------cceeeeeCCCCCeeeEEEecc-cceeeccC--CceEEEeeecccCceeEe
Confidence 777788888888999999999965 344456778889999999865 46788998 999999999887765543
Q ss_pred CCCCC---------CCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCCC
Q 043172 523 PPANR---------NLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNHY 561 (564)
Q Consensus 523 ~~~~~---------~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~~ 561 (564)
+..++ +..+|++|+..|...++|+|+.+|.|+||.+...
T Consensus 365 ~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 365 RLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred eccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 32211 1138999999999999999999999999998765
No 116
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2.3e-24 Score=222.57 Aligned_cols=290 Identities=15% Similarity=0.231 Sum_probs=218.9
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEE--eC---CcCeEEEEEee-CCCEEEEEeCCCeEEEEECC
Q 043172 263 GPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIF--LE---DCPVRKASFLP-DGSQAIIAGRRKFFYSLDLV 336 (564)
Q Consensus 263 ~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~--~~---~~~I~~l~fsp-dg~~l~s~~~dg~i~iwdl~ 336 (564)
....+|+..++-..++.+|. ..+.||.+.......-..+. .. ...+..+.|+. ..++|++++..|.|.+||+.
T Consensus 40 ~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln 118 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN 118 (839)
T ss_pred cccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence 45677778888888888874 46888877643322211111 11 12344567774 56899999999999999998
Q ss_pred CCceeeeccccccCCcceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEec-CCCEEEEEeCC
Q 043172 337 KAKADKIGPLVGREEKSLEFFEVSPD-SSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFAD-DGKQLLSSGGD 413 (564)
Q Consensus 337 ~~~~~~~~~~~~~~~~~v~~~~~spd-g~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~sp-dg~~l~s~s~d 413 (564)
.....+.......+.+.+.++.|++. .++|++|+.||.|++||++......++. ....|+++.|+| .+..|+++...
T Consensus 119 k~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~ds 198 (839)
T KOG0269|consen 119 KSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDS 198 (839)
T ss_pred ccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCC
Confidence 73222222333444458999999985 5788999999999999999988888877 556899999999 57889999999
Q ss_pred CeEEEEECCCCc-eeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcC
Q 043172 414 GQVYHWDLRTRT-CIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNN 492 (564)
Q Consensus 414 g~V~lwD~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fsp 492 (564)
|.+++||++... +..++.. |...+.++.|+|++.|||+|+.|+.|+||++... ..+++.++. ...+|.+|.|-|
T Consensus 199 G~lqlWDlRqp~r~~~k~~A-H~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~---~~~~~~tIn-Tiapv~rVkWRP 273 (839)
T KOG0269|consen 199 GYLQLWDLRQPDRCEKKLTA-HNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDS---RAKPKHTIN-TIAPVGRVKWRP 273 (839)
T ss_pred ceEEEeeccCchhHHHHhhc-ccCceEEEeecCCCceeeecCCCccEEEEeccCC---CccceeEEe-ecceeeeeeecc
Confidence 999999999754 4444444 4457999999999999999999999999999863 346666665 468999999999
Q ss_pred CCc-EEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeC-CCCEEEEEcCCCeEEEEEcCC
Q 043172 493 DAQ-ILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSP-GGGFMAVGNAAGKVFLYKLNH 560 (564)
Q Consensus 493 dg~-~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fsp-dg~~Lasgs~dG~V~lw~l~~ 560 (564)
..+ +||+++...|-.|+|||++- ++..+.+...|...++.++|.. +...|.+++.||.|..-.+.+
T Consensus 274 ~~~~hLAtcsmv~dtsV~VWDvrR--PYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 274 ARSYHLATCSMVVDTSVHVWDVRR--PYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKN 341 (839)
T ss_pred CccchhhhhhccccceEEEEeecc--ccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhc
Confidence 765 57778877789999999974 3333445566778899999965 456788999999887655443
No 117
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=7.6e-24 Score=207.48 Aligned_cols=253 Identities=15% Similarity=0.179 Sum_probs=199.2
Q ss_pred CCCCCeeEEEEcCCC-CEEEEEeCCCcEEEEEecCCCC--------ceeEEEEeCCcCeEEEEEeeC-CCEEEEEeCCCe
Q 043172 260 SSTGPINSVQFHRNA-QLLLVAGLDRRLRFFQIDGKRN--------TKIQSIFLEDCPVRKASFLPD-GSQAIIAGRRKF 329 (564)
Q Consensus 260 ~h~~~V~~l~fspdg-~~l~s~s~dg~I~lwd~~~~~~--------~~~~~~~~~~~~I~~l~fspd-g~~l~s~~~dg~ 329 (564)
.|.+.|+.+.+-|+. .++++++..+.|.|||...... .+-..+.+|...-+.++|++. .-+|++++.++.
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 499999999999965 4667778899999999864322 222367888877788999984 457888999999
Q ss_pred EEEEECCCCce-----eeeccccccCCcceEEEEEcCC-CCEEEEEeCCCeEEEEECCC--CcEEEEee-ecCcEEEEEE
Q 043172 330 FYSLDLVKAKA-----DKIGPLVGREEKSLEFFEVSPD-SSVIAFVGNEGYILLVSSKT--KELIGTLK-MNGTVRSLAF 400 (564)
Q Consensus 330 i~iwdl~~~~~-----~~~~~~~~~~~~~v~~~~~spd-g~~la~~~~dg~I~lwd~~t--~~~~~~~~-~~~~V~~l~~ 400 (564)
|++||+..... .....+.+|.. .|..++|++- ..+|++++.|+.+.|||+++ .++..... |.+.|.|++|
T Consensus 202 i~lwdi~~~~~~~~~~~p~~~~~~h~~-~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~f 280 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVDPKTIFSGHED-VVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAF 280 (422)
T ss_pred EEEEeccccccCCccccceEEeecCCc-ceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEe
Confidence 99999986543 12223445554 8999999994 56888999999999999995 44444444 8999999999
Q ss_pred ec-CCCEEEEEeCCCeEEEEECCCCc-eeEEEeecCCcceEEEEECCCC-CEEEEEeCCCcEEEEeCCccc---------
Q 043172 401 AD-DGKQLLSSGGDGQVYHWDLRTRT-CIHRAVDEGCINGTALCTSPDG-TFFAAGSDSGIVNVYNRQEFL--------- 468 (564)
Q Consensus 401 sp-dg~~l~s~s~dg~V~lwD~~~~~-~~~~~~~~~~~~i~~l~~sp~g-~~lasgs~dg~V~iwd~~~~~--------- 468 (564)
+| ++..||+||.|++|++||+|+.+ +++.+.. +...|.++.|||+. ..||+++.|+.+.|||+....
T Consensus 281 np~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~-H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~ 359 (422)
T KOG0264|consen 281 NPFNEFILATGSADKTVALWDLRNLNKPLHTFEG-HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAE 359 (422)
T ss_pred CCCCCceEEeccCCCcEEEeechhcccCceeccC-CCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhc
Confidence 99 66788999999999999999854 4555554 44579999999975 588999999999999997642
Q ss_pred CCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCC
Q 043172 469 GGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPS 515 (564)
Q Consensus 469 ~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s 515 (564)
.+.+.++....+|+..|+.+.|+|+..++++.... |+.+.||.+..
T Consensus 360 dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Svae-DN~LqIW~~s~ 405 (422)
T KOG0264|consen 360 DGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAE-DNILQIWQMAE 405 (422)
T ss_pred cCCcceeEEecCcccccccccCCCCCCeEEEEecC-CceEEEeeccc
Confidence 23466778889999999999999998776544433 89999999863
No 118
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.92 E-value=2.9e-22 Score=197.90 Aligned_cols=282 Identities=15% Similarity=0.163 Sum_probs=218.0
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCcee
Q 043172 262 TGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKAD 341 (564)
Q Consensus 262 ~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~ 341 (564)
..-|.||+|.++|. ++||..+|.|.||+.. .+...+..+.|.+.|.+++...+|..| +|+.|+.|..||-.-.+..
T Consensus 246 kk~Vl~v~F~engd-viTgDS~G~i~Iw~~~--~~~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y~k~r 321 (626)
T KOG2106|consen 246 KKFVLCVTFLENGD-VITGDSGGNILIWSKG--TNRISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNYRKLR 321 (626)
T ss_pred ceEEEEEEEcCCCC-EEeecCCceEEEEeCC--CceEEeEeeecCCceEEEEEecCccEe-ecCccceEEeccccccccc
Confidence 46799999999997 5689999999999875 455667777999999999999998655 5999999999983221110
Q ss_pred ee--------------------------------------ccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 043172 342 KI--------------------------------------GPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTK 383 (564)
Q Consensus 342 ~~--------------------------------------~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~ 383 (564)
.+ ....+|.. ....++.+|+.+++++++.|+.+++|+ ..
T Consensus 322 ~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~d-elwgla~hps~~q~~T~gqdk~v~lW~--~~ 398 (626)
T KOG2106|consen 322 ETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGD-ELWGLATHPSKNQLLTCGQDKHVRLWN--DH 398 (626)
T ss_pred cccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEeccc-ceeeEEcCCChhheeeccCcceEEEcc--CC
Confidence 00 00123333 567889999999999999999999999 66
Q ss_pred cEEEEeeecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEe
Q 043172 384 ELIGTLKMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYN 463 (564)
Q Consensus 384 ~~~~~~~~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd 463 (564)
+++.+.....++.|+.|+|.| .++.|+..|...+.|..+...+.. ... ..++++++|+|+|.+||+|+.|+.|+||-
T Consensus 399 k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~-~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~ 475 (626)
T KOG2106|consen 399 KLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTI-HTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYR 475 (626)
T ss_pred ceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEE-Eec-CCceEEEEEcCCCCEEEEecCCCeEEEEE
Confidence 777777788899999999999 899999999999999998555544 434 55789999999999999999999999999
Q ss_pred CCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEc------------------------------
Q 043172 464 RQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHI------------------------------ 513 (564)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl------------------------------ 513 (564)
+.... .....+.. -+..+|+++.||+|+++|.+-|. |-.|-.|..
T Consensus 476 Vs~~g-~~y~r~~k--~~gs~ithLDwS~Ds~~~~~~S~--d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~ 550 (626)
T KOG2106|consen 476 VSANG-RKYSRVGK--CSGSPITHLDWSSDSQFLVSNSG--DYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSD 550 (626)
T ss_pred ECCCC-cEEEEeee--ecCceeEEeeecCCCceEEeccC--ceEEEEEccccCcccceecceeeeeeEEEEEEEEecccC
Confidence 88641 11122222 23489999999999999998887 666666632
Q ss_pred ------------------------------CCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEc
Q 043172 514 ------------------------------PSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKL 558 (564)
Q Consensus 514 ------------------------------~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l 558 (564)
+-..+...+-...+|.+.|++++|..+...|++.+.|..|..|++
T Consensus 551 ~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 551 GTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred CchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 111111111222456778999999998888888889999999987
No 119
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=3e-22 Score=204.50 Aligned_cols=286 Identities=13% Similarity=0.153 Sum_probs=230.5
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEe-CCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCce
Q 043172 262 TGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFL-EDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKA 340 (564)
Q Consensus 262 ~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~-~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~ 340 (564)
.++|.||||+.+.+.||.+-.+|.|-||++... .-....+++ ....|.+++|+ ++..|++.+.+|.|.-||+.+++.
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~-w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~ 102 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN-WFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQ 102 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCC-ceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCce
Confidence 468999999999999999999999999999753 223344454 35679999999 566899999999999999999987
Q ss_pred eeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee---ecCcEEEEEEecCCCEEEEEeCCCeEE
Q 043172 341 DKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK---MNGTVRSLAFADDGKQLLSSGGDGQVY 417 (564)
Q Consensus 341 ~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~---~~~~V~~l~~spdg~~l~s~s~dg~V~ 417 (564)
.......+ ..|++++.+|.+..+++|+.+|.++.++...+....... ..++|.+++|+|++..|++|+.||.|+
T Consensus 103 ~~~~d~~g---g~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Ir 179 (691)
T KOG2048|consen 103 KYNIDSNG---GAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIR 179 (691)
T ss_pred eEEecCCC---cceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEE
Confidence 55433333 479999999999999999999988888888877654433 468999999999999999999999999
Q ss_pred EEECCCCceeEEEee-------cCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEE
Q 043172 418 HWDLRTRTCIHRAVD-------EGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKF 490 (564)
Q Consensus 418 lwD~~~~~~~~~~~~-------~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~f 490 (564)
+||+.++..++.... ....-+.++.|-.++ .||+|...|+|.+||...+ ..+..+..|...|.+++.
T Consensus 180 iwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~g-----TLiqS~~~h~adVl~Lav 253 (691)
T KOG2048|consen 180 IWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFG-----TLIQSHSCHDADVLALAV 253 (691)
T ss_pred EEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCc-----chhhhhhhhhcceeEEEE
Confidence 999999887763221 122335666665454 7899999999999999988 889999999999999999
Q ss_pred cCCCcEEEEEecCCCCeEEEEEcCCCce-eccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCCCC
Q 043172 491 NNDAQILAICSTMKKNSLKLIHIPSYNV-FSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNHYH 562 (564)
Q Consensus 491 spdg~~La~~s~~~d~~I~lwdl~s~~~-~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~~~ 562 (564)
++++.++++++. |+.|..+...+... .-.......|...|.+++..++ .|++|+.|+.+.+=.+..++
T Consensus 254 ~~~~d~vfsaGv--d~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~ 322 (691)
T KOG2048|consen 254 ADNEDRVFSAGV--DPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFK 322 (691)
T ss_pred cCCCCeEEEccC--CCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccccC
Confidence 999999999998 88888888766533 2222233456678999999886 89999999998876665543
No 120
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.92 E-value=3.1e-22 Score=208.30 Aligned_cols=312 Identities=15% Similarity=0.146 Sum_probs=239.6
Q ss_pred CccCCCeeeeeeeecccCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCC
Q 043172 240 AKLSPGLLEYSRLIDANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGS 319 (564)
Q Consensus 240 ~~l~~~~~d~~rl~~~~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~ 319 (564)
...+-..|++..-+-+.+.+++...|+++.-+|-=..++.|..+|+|.|+++. ....+.++....++|++++|..||+
T Consensus 180 ~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK--~dkil~sFk~d~g~VtslSFrtDG~ 257 (910)
T KOG1539|consen 180 SQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLK--FDKILMSFKQDWGRVTSLSFRTDGN 257 (910)
T ss_pred cCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcc--cCcEEEEEEccccceeEEEeccCCC
Confidence 34444577777777777788899999999999988899999999999999997 4557888876679999999999998
Q ss_pred EEEEEe-CCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc----EEEEee-ecC
Q 043172 320 QAIIAG-RRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKE----LIGTLK-MNG 393 (564)
Q Consensus 320 ~l~s~~-~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~----~~~~~~-~~~ 393 (564)
.+++.+ ..|.+.+||++..+...+ +...+..++....|.|....+++++.|..+++|=..++. .++.-. |..
T Consensus 258 p~las~~~~G~m~~wDLe~kkl~~v--~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~ 335 (910)
T KOG1539|consen 258 PLLASGRSNGDMAFWDLEKKKLINV--TRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSA 335 (910)
T ss_pred eeEEeccCCceEEEEEcCCCeeeee--eeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCC
Confidence 766554 669999999998876433 443344478899999999999999999888877544332 122211 777
Q ss_pred cEEEEEEe-cCCCEEEEEeCCCeEEEEECC--------------------------------------------------
Q 043172 394 TVRSLAFA-DDGKQLLSSGGDGQVYHWDLR-------------------------------------------------- 422 (564)
Q Consensus 394 ~V~~l~~s-pdg~~l~s~s~dg~V~lwD~~-------------------------------------------------- 422 (564)
+..++.|. .+|.++.+++.|++++.+++.
T Consensus 336 Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~ 415 (910)
T KOG1539|consen 336 PPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVI 415 (910)
T ss_pred CchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhccee
Confidence 88888887 567777777777766665542
Q ss_pred ---------------CCce-eEEEeec----CCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEc---c
Q 043172 423 ---------------TRTC-IHRAVDE----GCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTI---E 479 (564)
Q Consensus 423 ---------------~~~~-~~~~~~~----~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~---~ 479 (564)
+... .+.+... ....+++++.++.|++.+.|+..|.|-+|++.++ .....+ .
T Consensus 416 ~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSG-----i~r~sf~~~~ 490 (910)
T KOG1539|consen 416 TAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSG-----IHRKSFGDSP 490 (910)
T ss_pred EEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccC-----eeecccccCc
Confidence 1111 0001011 1256789999999999999999999999999997 555555 5
Q ss_pred ccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCC------------------------------------
Q 043172 480 NLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWP------------------------------------ 523 (564)
Q Consensus 480 ~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~------------------------------------ 523 (564)
.|..+|+.++...-++.+++++. +|-+.+|+.........+.
T Consensus 491 ah~~~V~gla~D~~n~~~vsa~~--~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kv 568 (910)
T KOG1539|consen 491 AHKGEVTGLAVDGTNRLLVSAGA--DGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKV 568 (910)
T ss_pred cccCceeEEEecCCCceEEEccC--cceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhh
Confidence 79999999999999999999998 9999999987654222211
Q ss_pred --CCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCCCC
Q 043172 524 --PANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNHYH 562 (564)
Q Consensus 524 --~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~~~ 562 (564)
...+|.+.|++++|||||++|++++.|++|++||+.+..
T Consensus 569 vR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~ 609 (910)
T KOG1539|consen 569 VREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGT 609 (910)
T ss_pred hHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcc
Confidence 123577899999999999999999999999999997753
No 121
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.91 E-value=1.7e-21 Score=192.57 Aligned_cols=296 Identities=18% Similarity=0.240 Sum_probs=223.5
Q ss_pred CCCeeeeeeeecccCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEe--CCcCeEEEEEeeCCCE
Q 043172 243 SPGLLEYSRLIDANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFL--EDCPVRKASFLPDGSQ 320 (564)
Q Consensus 243 ~~~~~d~~rl~~~~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~--~~~~I~~l~fspdg~~ 320 (564)
.-.+|+.++-.........+..|..+.|||.++-|+....-+.+.+|+..+....+.+-+.. ....|.|++|.++| -
T Consensus 181 ~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~eng-d 259 (626)
T KOG2106|consen 181 MLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENG-D 259 (626)
T ss_pred ccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCC-C
Confidence 34577777665555556677889999999966544444446889999988665433333322 23679999999988 5
Q ss_pred EEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc----------------
Q 043172 321 AIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKE---------------- 384 (564)
Q Consensus 321 l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~---------------- 384 (564)
+++|..+|.|.||+..+.+..+. ...|. +.|.+++.-.+|.+|- |+.|..|..||-.-.+
T Consensus 260 viTgDS~G~i~Iw~~~~~~~~k~--~~aH~-ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv 335 (626)
T KOG2106|consen 260 VITGDSGGNILIWSKGTNRISKQ--VHAHD-GGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTV 335 (626)
T ss_pred EEeecCCceEEEEeCCCceEEeE--eeecC-CceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEE
Confidence 67889999999999987776443 33444 4799999999997665 9999999999831100
Q ss_pred -------E------------------EEEeeecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceE
Q 043172 385 -------L------------------IGTLKMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGT 439 (564)
Q Consensus 385 -------~------------------~~~~~~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~ 439 (564)
. +..+.|......++.+|+...+++++.|+.+++|+ ..+........ .++.
T Consensus 336 ~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~--d~~~ 411 (626)
T KOG2106|consen 336 AEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIE--DPAE 411 (626)
T ss_pred ecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEec--Ccee
Confidence 0 00111445677889999999999999999999999 44444333322 3567
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCC-Cce
Q 043172 440 ALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPS-YNV 518 (564)
Q Consensus 440 ~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s-~~~ 518 (564)
++.|+|.| .+|.|+..|...|.|..+. .+-++..-..++++++|+|+|.+||+||. |+.|+||.+.. +..
T Consensus 412 ~~~fhpsg-~va~Gt~~G~w~V~d~e~~------~lv~~~~d~~~ls~v~ysp~G~~lAvgs~--d~~iyiy~Vs~~g~~ 482 (626)
T KOG2106|consen 412 CADFHPSG-VVAVGTATGRWFVLDTETQ------DLVTIHTDNEQLSVVRYSPDGAFLAVGSH--DNHIYIYRVSANGRK 482 (626)
T ss_pred EeeccCcc-eEEEeeccceEEEEecccc------eeEEEEecCCceEEEEEcCCCCEEEEecC--CCeEEEEEECCCCcE
Confidence 99999999 9999999999999999873 44444444889999999999999999999 99999999964 455
Q ss_pred eccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEc
Q 043172 519 FSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKL 558 (564)
Q Consensus 519 ~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l 558 (564)
+.......+ .+|+.+.||+|++||.+-+-|-.|..|.-
T Consensus 483 y~r~~k~~g--s~ithLDwS~Ds~~~~~~S~d~eiLyW~~ 520 (626)
T KOG2106|consen 483 YSRVGKCSG--SPITHLDWSSDSQFLVSNSGDYEILYWKP 520 (626)
T ss_pred EEEeeeecC--ceeEEeeecCCCceEEeccCceEEEEEcc
Confidence 544433333 88999999999999999999999999943
No 122
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.91 E-value=1.7e-22 Score=206.42 Aligned_cols=296 Identities=14% Similarity=0.159 Sum_probs=232.4
Q ss_pred CCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEE-----EeCCcCeEEEEEeeCCCEEEEEeCCCeEEE
Q 043172 258 DESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSI-----FLEDCPVRKASFLPDGSQAIIAGRRKFFYS 332 (564)
Q Consensus 258 ~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~-----~~~~~~I~~l~fspdg~~l~s~~~dg~i~i 332 (564)
..||..-|+++.|+|.+..|++++.|.++.+|..+..++.-+..+ .+........-|+|+++.+++-+..|-+++
T Consensus 263 l~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hl 342 (764)
T KOG1063|consen 263 LMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHL 342 (764)
T ss_pred hcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEE
Confidence 458999999999999999999999999999998876544333332 233456788999999999999999999999
Q ss_pred EEC-CCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-EEEEee----ecCcEEEEEEecCCCE
Q 043172 333 LDL-VKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKE-LIGTLK----MNGTVRSLAFADDGKQ 406 (564)
Q Consensus 333 wdl-~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~-~~~~~~----~~~~V~~l~~spdg~~ 406 (564)
|.. +.....+...+.||.. .|..+.|+|.|.+|++++.|-+-+++-.-..+ .-+.+. |...++|++|-+....
T Consensus 343 Wkt~d~~~w~~~~~iSGH~~-~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~ 421 (764)
T KOG1063|consen 343 WKTKDKTFWTQEPVISGHVD-GVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQ 421 (764)
T ss_pred EeccCccceeeccccccccc-cceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCce
Confidence 983 2333444444566665 79999999999999999999999998654111 112221 7788999999986667
Q ss_pred EEEEeCCCeEEEEECCCC--------------------------------ceeE---------------EE---------
Q 043172 407 LLSSGGDGQVYHWDLRTR--------------------------------TCIH---------------RA--------- 430 (564)
Q Consensus 407 l~s~s~dg~V~lwD~~~~--------------------------------~~~~---------------~~--------- 430 (564)
+++|.....+|+|+.... +... ..
T Consensus 422 FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ 501 (764)
T KOG1063|consen 422 FVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELT 501 (764)
T ss_pred eeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhcc
Confidence 888888888899875310 0000 00
Q ss_pred --------------e-----ecCCcceEEEEECCCCCEEEEEeCCC-----cEEEEeCCcccCCcceeeEEcccccccee
Q 043172 431 --------------V-----DEGCINGTALCTSPDGTFFAAGSDSG-----IVNVYNRQEFLGGKRKPIKTIENLTTKVD 486 (564)
Q Consensus 431 --------------~-----~~~~~~i~~l~~sp~g~~lasgs~dg-----~V~iwd~~~~~~~~~~~~~~~~~~~~~I~ 486 (564)
. -.|+..+.+++.+|+|+++|+++... .|++|+..++ ..+..+..|.-.|+
T Consensus 502 ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W-----~~~~~L~~HsLTVT 576 (764)
T KOG1063|consen 502 EPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW-----LQVQELEGHSLTVT 576 (764)
T ss_pred CCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch-----hhhheecccceEEE
Confidence 0 13556789999999999999998643 6999999987 78888999999999
Q ss_pred EEEEcCCCcEEEEEecCCCCeEEEEEcCCCce-eccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCCC
Q 043172 487 FMKFNNDAQILAICSTMKKNSLKLIHIPSYNV-FSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNHY 561 (564)
Q Consensus 487 ~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~-~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~~ 561 (564)
.|+|||||++|++.|. |.++.||....... ...+.....|..-|+++.|+|++.++|+++.|.+|.+|.....
T Consensus 577 ~l~FSpdg~~LLsvsR--DRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 577 RLAFSPDGRYLLSVSR--DRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred EEEECCCCcEEEEeec--CceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 9999999999999999 99999999854322 2334445677788999999999999999999999999998654
No 123
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=7.7e-23 Score=200.75 Aligned_cols=254 Identities=15% Similarity=0.170 Sum_probs=205.1
Q ss_pred CEEEEEeC-CCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcc
Q 043172 275 QLLLVAGL-DRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKS 353 (564)
Q Consensus 275 ~~l~s~s~-dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~ 353 (564)
.+++++.. -..|.+|.+.... .......-.++|.+++-+|+|.+|+.|+-.+.+|+|.+.+|....+ +..|- .+
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~--~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v--~~aHY-Q~ 125 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKD--QVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNV--LSAHY-QS 125 (476)
T ss_pred hheeeecccCccccccccCchh--hhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHH--HHhhc-cc
Confidence 46666654 4478899876322 2222233467899999999999999998999999999999997543 44444 48
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECC---------CCcEEEEee-ecCcEEEEEEecC--CCEEEEEeCCCeEEEEEC
Q 043172 354 LEFFEVSPDSSVIAFVGNEGYILLVSSK---------TKELIGTLK-MNGTVRSLAFADD--GKQLLSSGGDGQVYHWDL 421 (564)
Q Consensus 354 v~~~~~spdg~~la~~~~dg~I~lwd~~---------t~~~~~~~~-~~~~V~~l~~spd--g~~l~s~s~dg~V~lwD~ 421 (564)
|+|+.|+-||.+|++||.||.|.+|.+. +..+++.+. |.-+|+++...+. ..+|+++|.|.++++||+
T Consensus 126 ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdl 205 (476)
T KOG0646|consen 126 ITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDL 205 (476)
T ss_pred eeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEe
Confidence 9999999999999999999999999873 345666666 7889999998765 358999999999999999
Q ss_pred CCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCC-----------cceeeEEcccccc--ceeEE
Q 043172 422 RTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGG-----------KRKPIKTIENLTT--KVDFM 488 (564)
Q Consensus 422 ~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~-----------~~~~~~~~~~~~~--~I~~l 488 (564)
..+..+..+..+. .+.+++++|.++.+++|+.+|.|.+.++....+. ....+..+.+|.. .|+|+
T Consensus 206 S~g~LLlti~fp~--si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcL 283 (476)
T KOG0646|consen 206 SLGVLLLTITFPS--SIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCL 283 (476)
T ss_pred ccceeeEEEecCC--cceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEE
Confidence 9999888877554 5789999999999999999999999988765311 1234556678887 99999
Q ss_pred EEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCC
Q 043172 489 KFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPG 540 (564)
Q Consensus 489 ~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspd 540 (564)
+.+-||.+|++|+. ||.|.|||+.+.++++.+.... ++|+.+.+.|-
T Consensus 284 ais~DgtlLlSGd~--dg~VcvWdi~S~Q~iRtl~~~k---gpVtnL~i~~~ 330 (476)
T KOG0646|consen 284 AISTDGTLLLSGDE--DGKVCVWDIYSKQCIRTLQTSK---GPVTNLQINPL 330 (476)
T ss_pred EEecCccEEEeeCC--CCCEEEEecchHHHHHHHhhhc---cccceeEeecc
Confidence 99999999999999 9999999999999988765433 77888888653
No 124
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=5.9e-24 Score=219.48 Aligned_cols=246 Identities=17% Similarity=0.198 Sum_probs=197.4
Q ss_pred CCeeEEEEcC-CCCEEEEEeCCCcEEEEEecC-CCCceeEEEEeCCcCeEEEEEee-CCCEEEEEeCCCeEEEEECCCCc
Q 043172 263 GPINSVQFHR-NAQLLLVAGLDRRLRFFQIDG-KRNTKIQSIFLEDCPVRKASFLP-DGSQAIIAGRRKFFYSLDLVKAK 339 (564)
Q Consensus 263 ~~V~~l~fsp-dg~~l~s~s~dg~I~lwd~~~-~~~~~~~~~~~~~~~I~~l~fsp-dg~~l~s~~~dg~i~iwdl~~~~ 339 (564)
-.+..|.|+. +.++|||++..|.|.+||+.. ..++.++.+..|...++++.|++ ..++|++|+.||+|++||++...
T Consensus 88 ~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~ 167 (839)
T KOG0269|consen 88 YSAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK 167 (839)
T ss_pred eehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccc
Confidence 3566778886 567999999999999999974 24667778888999999999998 55788899999999999999877
Q ss_pred eeeeccccccCCcceEEEEEcC-CCCEEEEEeCCCeEEEEECCCC-cEEEEee-ecCcEEEEEEecCCCEEEEEeCCCeE
Q 043172 340 ADKIGPLVGREEKSLEFFEVSP-DSSVIAFVGNEGYILLVSSKTK-ELIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQV 416 (564)
Q Consensus 340 ~~~~~~~~~~~~~~v~~~~~sp-dg~~la~~~~dg~I~lwd~~t~-~~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~V 416 (564)
.. ..+.+..+ +|..++|+| .+.+|+++...|.+.+||++.. ++...+. |.++|.|+.|+|++.+|++||.|++|
T Consensus 168 S~--~t~~~nSE-SiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~v 244 (839)
T KOG0269|consen 168 SK--STFRSNSE-SIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMV 244 (839)
T ss_pred cc--ccccccch-hhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccE
Confidence 53 33555444 799999999 4778999999999999999864 3444444 99999999999999999999999999
Q ss_pred EEEECCCCceeEEEeecCCcceEEEEECCCCC-EEEEEe--CCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcC-
Q 043172 417 YHWDLRTRTCIHRAVDEGCINGTALCTSPDGT-FFAAGS--DSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNN- 492 (564)
Q Consensus 417 ~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~-~lasgs--~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fsp- 492 (564)
+|||+.+.+.-.....+...++.++.|-|..+ +||+++ .|-.|+|||++.. .-|..++..|+..++.++|-.
T Consensus 245 kiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP----YIP~~t~~eH~~~vt~i~W~~~ 320 (839)
T KOG0269|consen 245 KIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP----YIPYATFLEHTDSVTGIAWDSG 320 (839)
T ss_pred EEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccc----cccceeeeccCccccceeccCC
Confidence 99999876554444444555789999999866 566665 3778999999865 478899999999999999965
Q ss_pred CCcEEEEEecCCCCeEEEEEcCCCc
Q 043172 493 DAQILAICSTMKKNSLKLIHIPSYN 517 (564)
Q Consensus 493 dg~~La~~s~~~d~~I~lwdl~s~~ 517 (564)
|...|.+++. |++|..-.+.+..
T Consensus 321 d~~~l~s~sK--D~tv~qh~~knat 343 (839)
T KOG0269|consen 321 DRINLWSCSK--DGTVLQHLFKNAT 343 (839)
T ss_pred CceeeEeecC--ccHHHHhhhhccc
Confidence 4455666666 8887766555543
No 125
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.91 E-value=7.1e-23 Score=200.68 Aligned_cols=249 Identities=16% Similarity=0.213 Sum_probs=193.4
Q ss_pred EeCCcCeEEEEEeeCCCEEE-EEeCCCeEEEEECCCCceee--------eccccccCCcceEEEEEcCC-CCEEEEEeCC
Q 043172 303 FLEDCPVRKASFLPDGSQAI-IAGRRKFFYSLDLVKAKADK--------IGPLVGREEKSLEFFEVSPD-SSVIAFVGNE 372 (564)
Q Consensus 303 ~~~~~~I~~l~fspdg~~l~-s~~~dg~i~iwdl~~~~~~~--------~~~~~~~~~~~v~~~~~spd-g~~la~~~~d 372 (564)
..|.+.|+.+.+.|+...|+ +.+..+.++|||..+..... -..+.+|.. .-.+++|++. ...|++++.+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~-eg~glsWn~~~~g~Lls~~~d 199 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEK-EGYGLSWNRQQEGTLLSGSDD 199 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecc-cccccccccccceeEeeccCC
Confidence 34888999999999765554 55678899999987542221 225677776 3567899985 4578899999
Q ss_pred CeEEEEECCCCcE-------EEEee-ecCcEEEEEEec-CCCEEEEEeCCCeEEEEECCC--CceeEEEeecCCcceEEE
Q 043172 373 GYILLVSSKTKEL-------IGTLK-MNGTVRSLAFAD-DGKQLLSSGGDGQVYHWDLRT--RTCIHRAVDEGCINGTAL 441 (564)
Q Consensus 373 g~I~lwd~~t~~~-------~~~~~-~~~~V~~l~~sp-dg~~l~s~s~dg~V~lwD~~~--~~~~~~~~~~~~~~i~~l 441 (564)
+.|++||+..... ...+. |...|..++|++ +...|++++.|+.+.|||+|+ .++.. ....+...+.|+
T Consensus 200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~-~~~ah~~~vn~~ 278 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSH-SVKAHSAEVNCV 278 (422)
T ss_pred CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcc-cccccCCceeEE
Confidence 9999999975432 23333 889999999999 567888999999999999995 33333 333456689999
Q ss_pred EECCCC-CEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCc-EEEEEecCCCCeEEEEEcCCCcee
Q 043172 442 CTSPDG-TFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQ-ILAICSTMKKNSLKLIHIPSYNVF 519 (564)
Q Consensus 442 ~~sp~g-~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~-~La~~s~~~d~~I~lwdl~s~~~~ 519 (564)
+|+|-+ ..||+||.|++|++||++.. .++++++.+|...|.+|.|||... .||+++. |+.+.+||+..-...
T Consensus 279 ~fnp~~~~ilAT~S~D~tV~LwDlRnL----~~~lh~~e~H~dev~~V~WSPh~etvLASSg~--D~rl~vWDls~ig~e 352 (422)
T KOG0264|consen 279 AFNPFNEFILATGSADKTVALWDLRNL----NKPLHTFEGHEDEVFQVEWSPHNETVLASSGT--DRRLNVWDLSRIGEE 352 (422)
T ss_pred EeCCCCCceEEeccCCCcEEEeechhc----ccCceeccCCCcceEEEEeCCCCCceeEeccc--CCcEEEEeccccccc
Confidence 999964 57899999999999999976 469999999999999999999765 4555554 999999999753322
Q ss_pred c-----------cCCCCCCCCCCcEEEEEeCCCCE-EEEEcCCCeEEEEEcC
Q 043172 520 S-----------NWPPANRNLQYPRCLDFSPGGGF-MAVGNAAGKVFLYKLN 559 (564)
Q Consensus 520 ~-----------~~~~~~~~~~~V~~l~fspdg~~-Lasgs~dG~V~lw~l~ 559 (564)
+ .+-.+.+|...|+.+.|+|+..+ |++.+.|+.+.||++.
T Consensus 353 q~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 353 QSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred cChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 2 12356788899999999998765 6688899999999986
No 126
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.2e-21 Score=200.17 Aligned_cols=316 Identities=18% Similarity=0.209 Sum_probs=231.9
Q ss_pred CccCCCeeeeeeeecccCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCC
Q 043172 240 AKLSPGLLEYSRLIDANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGS 319 (564)
Q Consensus 240 ~~l~~~~~d~~rl~~~~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~ 319 (564)
-.-....||...++.........++|++++.+|.+..++.|+.||.+..+++.......-..+....+.|.+++|+|++.
T Consensus 88 ~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~ 167 (691)
T KOG2048|consen 88 LSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGT 167 (691)
T ss_pred CCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCcc
Confidence 34445578888888777778889999999999999999999999977766665443333344555678999999999999
Q ss_pred EEEEEeCCCeEEEEECCCCceeee-----ccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-ecC
Q 043172 320 QAIIAGRRKFFYSLDLVKAKADKI-----GPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNG 393 (564)
Q Consensus 320 ~l~s~~~dg~i~iwdl~~~~~~~~-----~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~ 393 (564)
.|+.|+.||.|++||..++....+ ..+.......|+++.|-.++ .|++|...|.|.+||...+..+..+. |.+
T Consensus 168 ~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~a 246 (691)
T KOG2048|consen 168 KIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDA 246 (691)
T ss_pred EEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhc
Confidence 999999999999999999987663 22333233457777777554 78899999999999999999999888 999
Q ss_pred cEEEEEEecCCCEEEEEeCCCeEEEEECCCCce---eEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccC-
Q 043172 394 TVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTC---IHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLG- 469 (564)
Q Consensus 394 ~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~---~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~- 469 (564)
.|.+++..+++..++++|.|+.|..|...+... .......|...+.++++.++ .+++|+.|..+.+-..+....
T Consensus 247 dVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~~ 324 (691)
T KOG2048|consen 247 DVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKNM 324 (691)
T ss_pred ceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccccCch
Confidence 999999999999999999999999998877643 22223345556778887766 777787777776655443100
Q ss_pred -----------------C----------------------------cceeeEEccccccceeEEEEcCCCcEEEEEecCC
Q 043172 470 -----------------G----------------------------KRKPIKTIENLTTKVDFMKFNNDAQILAICSTMK 504 (564)
Q Consensus 470 -----------------~----------------------------~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~ 504 (564)
. ....++-.......|++.+.||+|++++++.-
T Consensus 325 ~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~-- 402 (691)
T KOG2048|consen 325 DHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTV-- 402 (691)
T ss_pred hhhccccccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeec--
Confidence 0 00011111123456889999999999999883
Q ss_pred CCeEEEEEcCC------------------------------------------------C--ceeccCCCCCCCCCCcEE
Q 043172 505 KNSLKLIHIPS------------------------------------------------Y--NVFSNWPPANRNLQYPRC 534 (564)
Q Consensus 505 d~~I~lwdl~s------------------------------------------------~--~~~~~~~~~~~~~~~V~~ 534 (564)
..++||.+.. . +....+ ........|+.
T Consensus 403 -~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~-~~~~~~~~I~~ 480 (691)
T KOG2048|consen 403 -SRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSI-QSQAKCPSISR 480 (691)
T ss_pred -cceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhcc-ccccCCCccee
Confidence 3444444432 0 000000 01123467899
Q ss_pred EEEeCCCCEEEEEcCCCeEEEEEcCCCC
Q 043172 535 LDFSPGGGFMAVGNAAGKVFLYKLNHYH 562 (564)
Q Consensus 535 l~fspdg~~Lasgs~dG~V~lw~l~~~~ 562 (564)
+..||+|+|||+.+..|.|.+|++.+.+
T Consensus 481 l~~SsdG~yiaa~~t~g~I~v~nl~~~~ 508 (691)
T KOG2048|consen 481 LVVSSDGNYIAAISTRGQIFVYNLETLE 508 (691)
T ss_pred EEEcCCCCEEEEEeccceEEEEEcccce
Confidence 9999999999999999999999998643
No 127
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=1.1e-21 Score=182.94 Aligned_cols=257 Identities=13% Similarity=0.156 Sum_probs=196.6
Q ss_pred CCeEEcCCCccCCCeeeeee--eecccCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCe
Q 043172 232 EDLVVKSSAKLSPGLLEYSR--LIDANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPV 309 (564)
Q Consensus 232 ~~~~~~~~~~l~~~~~d~~r--l~~~~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I 309 (564)
..++..++.+-..++|+++. .........|.++|.+++|+.+|..+++|+.|+.+++||+..+ .+..+..|..+|
T Consensus 40 ~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~---Q~~~v~~Hd~pv 116 (347)
T KOG0647|consen 40 DNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG---QVSQVAAHDAPV 116 (347)
T ss_pred CceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC---Ceeeeeecccce
Confidence 33343444444444444443 1111223569999999999999999999999999999999865 456677899999
Q ss_pred EEEEEeeCCC--EEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE
Q 043172 310 RKASFLPDGS--QAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIG 387 (564)
Q Consensus 310 ~~l~fspdg~--~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~ 387 (564)
.++.|-+... .|++|+.|++|+.||++.........++. .+.++.+ -..+++++..+..|.+|+++.+....
T Consensus 117 kt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe----RvYa~Dv--~~pm~vVata~r~i~vynL~n~~te~ 190 (347)
T KOG0647|consen 117 KTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE----RVYAADV--LYPMAVVATAERHIAVYNLENPPTEF 190 (347)
T ss_pred eEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc----eeeehhc--cCceeEEEecCCcEEEEEcCCCcchh
Confidence 9999997655 89999999999999999877655444443 2444333 34578888889999999997664432
Q ss_pred Ee-e--ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCce--eEEEeecC--------CcceEEEEECCCCCEEEEEe
Q 043172 388 TL-K--MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTC--IHRAVDEG--------CINGTALCTSPDGTFFAAGS 454 (564)
Q Consensus 388 ~~-~--~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~--~~~~~~~~--------~~~i~~l~~sp~g~~lasgs 454 (564)
.. . ..-.++|++..++....+.|+-.|.|.+..+..+.. -..|.-|. -..|.+|+|+|....|++.+
T Consensus 191 k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaG 270 (347)
T KOG0647|consen 191 KRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAG 270 (347)
T ss_pred hhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEec
Confidence 21 1 445789999999988889999999999999887532 22333222 23578999999999999999
Q ss_pred CCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEec
Q 043172 455 DSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICST 502 (564)
Q Consensus 455 ~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~ 502 (564)
.||++.+||-... ..+++...|..+|++..|+.+|.++|.+.+
T Consensus 271 sDGtf~FWDkdar-----~kLk~s~~~~qpItcc~fn~~G~ifaYA~g 313 (347)
T KOG0647|consen 271 SDGTFSFWDKDAR-----TKLKTSETHPQPITCCSFNRNGSIFAYALG 313 (347)
T ss_pred CCceEEEecchhh-----hhhhccCcCCCccceeEecCCCCEEEEEee
Confidence 9999999998875 778888899999999999999999998876
No 128
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=2.8e-22 Score=187.57 Aligned_cols=274 Identities=17% Similarity=0.219 Sum_probs=220.3
Q ss_pred CeEEcCCCccCCCeeeeeeeecccCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEec------CC------------
Q 043172 233 DLVVKSSAKLSPGLLEYSRLIDANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQID------GK------------ 294 (564)
Q Consensus 233 ~~~~~~~~~l~~~~~d~~rl~~~~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~------~~------------ 294 (564)
..+.+.+.+-...+|.+..-.++.+..||.+.|+||.||+.+.++++++.|++..||... ..
T Consensus 161 pi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~ 240 (481)
T KOG0300|consen 161 PICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEE 240 (481)
T ss_pred cceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhh
Confidence 344455667777889998888888899999999999999999999999999999999721 00
Q ss_pred --------------------CCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcce
Q 043172 295 --------------------RNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSL 354 (564)
Q Consensus 295 --------------------~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v 354 (564)
-..++..+.+|...|.++.|...|+.+++++.|++..+||++++.+. ..+.||.. ..
T Consensus 241 e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v--~~LtGHd~-EL 317 (481)
T KOG0300|consen 241 EHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVV--NILTGHDS-EL 317 (481)
T ss_pred hcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCcee--ccccCcch-hc
Confidence 01235677889999999999999999999999999999999999974 45778776 68
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCC-cEEEEee-ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCc-eeEEEe
Q 043172 355 EFFEVSPDSSVIAFVGNEGYILLVSSKTK-ELIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRT-CIHRAV 431 (564)
Q Consensus 355 ~~~~~spdg~~la~~~~dg~I~lwd~~t~-~~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~-~~~~~~ 431 (564)
+.++-+|..+++++++.|.+.++||.+.. +.+..|. |...|+++.|..+. .+++|+.|.+|++||+++.+ ++.++.
T Consensus 318 tHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIR 396 (481)
T KOG0300|consen 318 THCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIR 396 (481)
T ss_pred cccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeee
Confidence 88899999999999999999999999843 3455566 88999999999765 48899999999999999754 455565
Q ss_pred ecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCC--cEEEEEecCCCCeEE
Q 043172 432 DEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDA--QILAICSTMKKNSLK 509 (564)
Q Consensus 432 ~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg--~~La~~s~~~d~~I~ 509 (564)
... ++..++++..+..||.--.+..|++||+.... -..-|-..-.+|...|+|++|..+- .-|++++. |..+.
T Consensus 397 tdS--~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~R-laRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGF--DR~v~ 471 (481)
T KOG0300|consen 397 TDS--PANRVAVSKGHPIIAIPHDNRQVRLFDLNGNR-LARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGF--DRMVA 471 (481)
T ss_pred cCC--ccceeEeecCCceEEeccCCceEEEEecCCCc-cccCCcccccccceeeeeeeccccCcccccccccc--cceee
Confidence 444 46788888888899999999999999998640 0111222345788999999997542 34667777 88999
Q ss_pred EEEcCC
Q 043172 510 LIHIPS 515 (564)
Q Consensus 510 lwdl~s 515 (564)
-|.+..
T Consensus 472 gW~in~ 477 (481)
T KOG0300|consen 472 GWKINT 477 (481)
T ss_pred eeEecc
Confidence 998864
No 129
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=2.7e-22 Score=196.92 Aligned_cols=263 Identities=15% Similarity=0.179 Sum_probs=206.9
Q ss_pred CCCeeeeeeeecccCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEE
Q 043172 243 SPGLLEYSRLIDANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAI 322 (564)
Q Consensus 243 ~~~~~d~~rl~~~~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~ 322 (564)
....|.+.+........--.++|.|++-+|+|.+|+.|+..|.|++|.+.+ +..+..+..|-.+|+|+.|+-||.+|+
T Consensus 62 ~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelss--G~LL~v~~aHYQ~ITcL~fs~dgs~ii 139 (476)
T KOG0646|consen 62 LLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSS--GILLNVLSAHYQSITCLKFSDDGSHII 139 (476)
T ss_pred cccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEecc--ccHHHHHHhhccceeEEEEeCCCcEEE
Confidence 344566553333222223468999999999999999998999999999984 457777788999999999999999999
Q ss_pred EEeCCCeEEEEECCC-------CceeeeccccccCCcceEEEEEcCC--CCEEEEEeCCCeEEEEECCCCcEEEEeeecC
Q 043172 323 IAGRRKFFYSLDLVK-------AKADKIGPLVGREEKSLEFFEVSPD--SSVIAFVGNEGYILLVSSKTKELIGTLKMNG 393 (564)
Q Consensus 323 s~~~dg~i~iwdl~~-------~~~~~~~~~~~~~~~~v~~~~~spd--g~~la~~~~dg~I~lwd~~t~~~~~~~~~~~ 393 (564)
+||.||.|.+|.+.. ....+...+..|. -+|+.+...+. ..+|++++.|.++++||+..+..+.++..+.
T Consensus 140 TgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Ht-lsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~ 218 (476)
T KOG0646|consen 140 TGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHT-LSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPS 218 (476)
T ss_pred ecCCCccEEEEEEEeecccccCCCccceeeeccCc-ceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCC
Confidence 999999999998643 2333344455554 48999888775 4689999999999999999999999999999
Q ss_pred cEEEEEEecCCCEEEEEeCCCeEEEEECCCCc----------------eeEEEeecCC-cceEEEEECCCCCEEEEEeCC
Q 043172 394 TVRSLAFADDGKQLLSSGGDGQVYHWDLRTRT----------------CIHRAVDEGC-INGTALCTSPDGTFFAAGSDS 456 (564)
Q Consensus 394 ~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~----------------~~~~~~~~~~-~~i~~l~~sp~g~~lasgs~d 456 (564)
.+.+++..|.++.+++|+.+|.|++.++..-. .+..+..+.. ..|+|++++-+|..|++|+.|
T Consensus 219 si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~d 298 (476)
T KOG0646|consen 219 SIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDED 298 (476)
T ss_pred cceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCC
Confidence 99999999999999999999999998875422 1222333322 479999999999999999999
Q ss_pred CcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcC
Q 043172 457 GIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIP 514 (564)
Q Consensus 457 g~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~ 514 (564)
|.|+|||+.+. ++++++....++|+.+.+.|-.+-...+.. +.-.+-.|++.
T Consensus 299 g~VcvWdi~S~-----Q~iRtl~~~kgpVtnL~i~~~~~~~~l~~~-~~ps~~~~~lk 350 (476)
T KOG0646|consen 299 GKVCVWDIYSK-----QCIRTLQTSKGPVTNLQINPLERGIILFEH-KQPSLPNPHLK 350 (476)
T ss_pred CCEEEEecchH-----HHHHHHhhhccccceeEeeccccceecccc-cCccCCchHhh
Confidence 99999999987 888888878899999999776443433322 24455556553
No 130
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=1.3e-21 Score=183.23 Aligned_cols=249 Identities=19% Similarity=0.217 Sum_probs=194.7
Q ss_pred CCccCCCeeeee-eeecccCC-----CCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEE
Q 043172 239 SAKLSPGLLEYS-RLIDANAD-----ESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKA 312 (564)
Q Consensus 239 ~~~l~~~~~d~~-rl~~~~~~-----~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l 312 (564)
+..|....||-. |+.++... -.|..||.+++|.+ ...+++|+.||.|+++|+.+.. ...+..|..+|.|+
T Consensus 25 ~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~---~~~igth~~~i~ci 100 (323)
T KOG1036|consen 25 SSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN---EDQIGTHDEGIRCI 100 (323)
T ss_pred CCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCc---ceeeccCCCceEEE
Confidence 345555567765 66665443 35999999999998 4578899999999999998654 33455699999999
Q ss_pred EEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee--
Q 043172 313 SFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-- 390 (564)
Q Consensus 313 ~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-- 390 (564)
.+++-...+++||.|+.|++||...... ...+. ..+.|.++.. .|+.|++|+.+..|.+||+++.....+.+
T Consensus 101 ~~~~~~~~vIsgsWD~~ik~wD~R~~~~--~~~~d--~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS 174 (323)
T KOG1036|consen 101 EYSYEVGCVISGSWDKTIKFWDPRNKVV--VGTFD--QGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRRES 174 (323)
T ss_pred EeeccCCeEEEcccCccEEEEecccccc--ccccc--cCceEEEEec--cCCEEEEeecCceEEEEEcccccchhhhccc
Confidence 9999888999999999999999986332 11121 1124666655 58899999999999999999876654333
Q ss_pred -ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCC----ceeEEEeec--------CCcceEEEEECCCCCEEEEEeCCC
Q 043172 391 -MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTR----TCIHRAVDE--------GCINGTALCTSPDGTFFAAGSDSG 457 (564)
Q Consensus 391 -~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~----~~~~~~~~~--------~~~~i~~l~~sp~g~~lasgs~dg 457 (564)
....++|+++.|++.-+++++-+|.|.+=.+... .....|..| -..+|.+|+|+|-...||||+.||
T Consensus 175 ~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG 254 (323)
T KOG1036|consen 175 SLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDG 254 (323)
T ss_pred cceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCc
Confidence 4568999999998888999999999887665543 111122211 134688999999999999999999
Q ss_pred cEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEec
Q 043172 458 IVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICST 502 (564)
Q Consensus 458 ~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~ 502 (564)
.|.+||+... +.+..+....+.|.+++|+.+|..||+++.
T Consensus 255 ~V~~Wd~~~r-----Krl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 255 IVNIWDLFNR-----KRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eEEEccCcch-----hhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 9999999886 888888888889999999999999999986
No 131
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=6.5e-24 Score=217.57 Aligned_cols=240 Identities=19% Similarity=0.257 Sum_probs=214.1
Q ss_pred eecccCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEE
Q 043172 252 LIDANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFY 331 (564)
Q Consensus 252 l~~~~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~ 331 (564)
+|+......|...|.|+..-..++.+++||.|..+.||.+. ....+.++.+|..+|.++.|++....|++|+.+|+|+
T Consensus 18 ~~~~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~--kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK 95 (825)
T KOG0267|consen 18 VWDTREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIG--KPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIK 95 (825)
T ss_pred cccchhhhhhhhhhceeeeeccceeeccCCCceeecccccc--CCchhheeeccCCcceeeecCcchhhhcccccCCcee
Confidence 45555566799999999997788999999999999999886 4446677999999999999999999999999999999
Q ss_pred EEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEE
Q 043172 332 SLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSS 410 (564)
Q Consensus 332 iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~ 410 (564)
+||+..++. +..+.||.. .+..+.|+|-+.++|.++.|+.+.+||.+..-+...+. |...|..+.|+|+|++++++
T Consensus 96 ~wDleeAk~--vrtLtgh~~-~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g 172 (825)
T KOG0267|consen 96 VWDLEEAKI--VRTLTGHLL-NITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASG 172 (825)
T ss_pred eeehhhhhh--hhhhhcccc-CcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeecc
Confidence 999998886 446888876 68889999999999999999999999999888888888 88899999999999999999
Q ss_pred eCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEE
Q 043172 411 GGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKF 490 (564)
Q Consensus 411 s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~f 490 (564)
+.|.++++||+..|+....|..+.+ .+.++.|+|..-++++|+.|++|++||+++. ..+.........|.+++|
T Consensus 173 ~ed~tvki~d~~agk~~~ef~~~e~-~v~sle~hp~e~Lla~Gs~d~tv~f~dletf-----e~I~s~~~~~~~v~~~~f 246 (825)
T KOG0267|consen 173 GEDNTVKIWDLTAGKLSKEFKSHEG-KVQSLEFHPLEVLLAPGSSDRTVRFWDLETF-----EVISSGKPETDGVRSLAF 246 (825)
T ss_pred CCcceeeeecccccccccccccccc-cccccccCchhhhhccCCCCceeeeecccee-----EEeeccCCccCCceeeee
Confidence 9999999999999999988885544 6788999999999999999999999999987 777777777899999999
Q ss_pred cCCCcEEEEEec
Q 043172 491 NNDAQILAICST 502 (564)
Q Consensus 491 spdg~~La~~s~ 502 (564)
+|++..+++|..
T Consensus 247 n~~~~~~~~G~q 258 (825)
T KOG0267|consen 247 NPDGKIVLSGEQ 258 (825)
T ss_pred cCCceeeecCch
Confidence 999999888764
No 132
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.89 E-value=9.9e-22 Score=201.00 Aligned_cols=265 Identities=17% Similarity=0.212 Sum_probs=215.2
Q ss_pred hhcccCCCeEEcCCCccCCCeeeee--eeecccCCCCCCCCeeE-EEEcC-CCCEEEEEeCCCcEEEEEecCCCCceeEE
Q 043172 226 DILRTDEDLVVKSSAKLSPGLLEYS--RLIDANADESSTGPINS-VQFHR-NAQLLLVAGLDRRLRFFQIDGKRNTKIQS 301 (564)
Q Consensus 226 ~ll~~~~~~~~~~~~~l~~~~~d~~--rl~~~~~~~~h~~~V~~-l~fsp-dg~~l~s~s~dg~I~lwd~~~~~~~~~~~ 301 (564)
.+....+..+...+++-....|+.. .........+|.+.|.+ ++|-+ ++-.|++|+.|.+|.+|... ...++..
T Consensus 19 ~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~--~~~P~~~ 96 (745)
T KOG0301|consen 19 AVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLS--QAEPLYT 96 (745)
T ss_pred eeEecCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecC--CCCchhh
Confidence 3444445556666666666677653 33333456778888877 99887 44569999999999999887 4568889
Q ss_pred EEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 043172 302 IFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSK 381 (564)
Q Consensus 302 ~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~ 381 (564)
+.+|...|.+++...++. +++|+.|.++++|....... .+.+|.. +|+.++.-|.+ .+++|+.|.+|++|.-
T Consensus 97 LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~~----~l~gH~a-sVWAv~~l~e~-~~vTgsaDKtIklWk~- 168 (745)
T KOG0301|consen 97 LKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELVY----SLQGHTA-SVWAVASLPEN-TYVTGSADKTIKLWKG- 168 (745)
T ss_pred hhccccceeeeecCCcCc-eEecccccceEEecchhhhc----ccCCcch-heeeeeecCCC-cEEeccCcceeeeccC-
Confidence 999999999999877776 99999999999998754332 3777776 89999999988 8889999999999974
Q ss_pred CCcEEEEee-ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEE
Q 043172 382 TKELIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVN 460 (564)
Q Consensus 382 t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~ 460 (564)
++.+.++. |...|+++++.+++. |++++.||.|++|++ ++.++..+..+.. .+.++...+++..++++++|++++
T Consensus 169 -~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l~~~~ghtn-~vYsis~~~~~~~Ivs~gEDrtlr 244 (745)
T KOG0301|consen 169 -GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVLLEMHGHTN-FVYSISMALSDGLIVSTGEDRTLR 244 (745)
T ss_pred -CchhhhhccchhheeeeEEecCCC-eEeecCCceEEEEec-cCceeeeeeccce-EEEEEEecCCCCeEEEecCCceEE
Confidence 77888888 999999999998754 788999999999999 6888888776655 688999888889999999999999
Q ss_pred EEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcC
Q 043172 461 VYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIP 514 (564)
Q Consensus 461 iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~ 514 (564)
||+.. .+...+.-.+..|+++.+-++|.+++.|| ||.||||...
T Consensus 245 iW~~~-------e~~q~I~lPttsiWsa~~L~NgDIvvg~S---DG~VrVfT~~ 288 (745)
T KOG0301|consen 245 IWKKD-------ECVQVITLPTTSIWSAKVLLNGDIVVGGS---DGRVRVFTVD 288 (745)
T ss_pred EeecC-------ceEEEEecCccceEEEEEeeCCCEEEecc---CceEEEEEec
Confidence 99987 45666666677999999999998766555 8999999876
No 133
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=1.6e-23 Score=214.65 Aligned_cols=257 Identities=20% Similarity=0.308 Sum_probs=219.4
Q ss_pred CCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCC
Q 043172 272 RNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREE 351 (564)
Q Consensus 272 pdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~ 351 (564)
|-+.+++.....-.+++|+... +-.|...+.++..-..++.+++|+.+..+-+|.+..... +..+.+|..
T Consensus 2 ~~~~~~m~~~~~t~Lr~~~~~~--------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~--i~S~~~hes 71 (825)
T KOG0267|consen 2 PGMEFLMKTKRATKLRVWDTRE--------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNA--ITSLTGHES 71 (825)
T ss_pred Ccccccceeeeeeccccccchh--------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCch--hheeeccCC
Confidence 3444555555666777886542 234666777777766788899999998899998865543 445778776
Q ss_pred cceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEE
Q 043172 352 KSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRA 430 (564)
Q Consensus 352 ~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~ 430 (564)
+|.++.|++...+|+.|+.+|+|++||+...+.++++. |...+.++.|+|-+.+++.|+.|+.+.+||++...|.+.+
T Consensus 72 -pIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~ 150 (825)
T KOG0267|consen 72 -PIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTY 150 (825)
T ss_pred -cceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeee
Confidence 89999999999999999999999999999999999888 8899999999999999999999999999999999999988
Q ss_pred eecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEE
Q 043172 431 VDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKL 510 (564)
Q Consensus 431 ~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~l 510 (564)
.. |...+.++.|+|+|+|++.|+.|.+++|||...+ +.+..|..|...+..+.|+|..-+++.|+. |.+|++
T Consensus 151 ~s-~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag-----k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~--d~tv~f 222 (825)
T KOG0267|consen 151 KS-HTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAG-----KLSKEFKSHEGKVQSLEFHPLEVLLAPGSS--DRTVRF 222 (825)
T ss_pred cC-CcceeEEEeecCCCceeeccCCcceeeeeccccc-----ccccccccccccccccccCchhhhhccCCC--Cceeee
Confidence 87 5556889999999999999999999999999988 899999999999999999999999999998 999999
Q ss_pred EEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCC
Q 043172 511 IHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAA 550 (564)
Q Consensus 511 wdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~d 550 (564)
|++.+..++...... ...|.++.|+|++..+++|...
T Consensus 223 ~dletfe~I~s~~~~---~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 223 WDLETFEVISSGKPE---TDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred eccceeEEeeccCCc---cCCceeeeecCCceeeecCchh
Confidence 999988887654433 4779999999999988887654
No 134
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=4.9e-21 Score=179.01 Aligned_cols=251 Identities=14% Similarity=0.148 Sum_probs=192.6
Q ss_pred eCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCC--CceeeeccccccCCcceEEEEEcC--CCCEEEEEeCCCeEEEEE
Q 043172 304 LEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVK--AKADKIGPLVGREEKSLEFFEVSP--DSSVIAFVGNEGYILLVS 379 (564)
Q Consensus 304 ~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~--~~~~~~~~~~~~~~~~v~~~~~sp--dg~~la~~~~dg~I~lwd 379 (564)
+|..-|+++.|.+-|+++++|+.|.++.|||... +..........|.. +|..+.|.+ -|+.+|+++.|+++.||.
T Consensus 11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~-Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDG-SIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred CCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCC-cEEEEEecCccccceEEEEecCCceeeee
Confidence 5677899999999999999999999999999754 33333444455554 788888865 489999999999999997
Q ss_pred CC-------CCcEEEE--ee-ecCcEEEEEEec--CCCEEEEEeCCCeEEEEECCCCceeEEEee------------cCC
Q 043172 380 SK-------TKELIGT--LK-MNGTVRSLAFAD--DGKQLLSSGGDGQVYHWDLRTRTCIHRAVD------------EGC 435 (564)
Q Consensus 380 ~~-------t~~~~~~--~~-~~~~V~~l~~sp--dg~~l~s~s~dg~V~lwD~~~~~~~~~~~~------------~~~ 435 (564)
-. ..+++.. +. ..+.|+++.|.| -|-.|++++.||.|+||+.-..-.+..+.. ...
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 52 1234332 33 567899999999 477899999999999998865444433332 123
Q ss_pred cceEEEEECCC---CCEEEEEeCC-----CcEEEEeCCcccCCcceeeEEccccccceeEEEEcCC----CcEEEEEecC
Q 043172 436 INGTALCTSPD---GTFFAAGSDS-----GIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNND----AQILAICSTM 503 (564)
Q Consensus 436 ~~i~~l~~sp~---g~~lasgs~d-----g~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspd----g~~La~~s~~ 503 (564)
....|+.|+|. ..+||+|+.+ +.+.||..... ..+...+.++..|+.+|+.|+|.|+ ..+||+++.
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~-~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~k- 247 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNEN-GRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATK- 247 (361)
T ss_pred CcceEEeeccccccCceEEEEcccCCccccceEEEEecCC-cceeeeehhcCCCCCcceeeeeccccCCceeeEEEeec-
Confidence 34678888874 3589999876 57899987764 1245677788899999999999995 467889988
Q ss_pred CCCeEEEEEcCCCc-----------------eeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q 043172 504 KKNSLKLIHIPSYN-----------------VFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLN 559 (564)
Q Consensus 504 ~d~~I~lwdl~s~~-----------------~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~ 559 (564)
|| |+||++.... .+..+.....|.+.|..+.|.-.|..|++.+.||+|++|..+
T Consensus 248 -Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 248 -DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred -Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 88 9999997311 112223345688899999999999999999999999999865
No 135
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=6.5e-22 Score=207.37 Aligned_cols=201 Identities=17% Similarity=0.251 Sum_probs=169.8
Q ss_pred CCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEee-CCCEEEEEeCCCeEEEEECCC
Q 043172 259 ESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLP-DGSQAIIAGRRKFFYSLDLVK 337 (564)
Q Consensus 259 ~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fsp-dg~~l~s~~~dg~i~iwdl~~ 337 (564)
.||.+.|..|.||.++ +|++++.|++|+||++. ...++..+ .|..-|+|++|+| |.+|+++|+-|+.|+||++..
T Consensus 366 ~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~--~~~CL~~F-~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d 441 (712)
T KOG0283|consen 366 KGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPG--RKECLKVF-SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISD 441 (712)
T ss_pred hccchhheecccccCC-eeEeccccccEEeecCC--CcceeeEE-ecCCeeEEEEecccCCCcEeecccccceEEeecCc
Confidence 4799999999999764 89999999999999987 44566654 4899999999999 889999999999999999999
Q ss_pred CceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee---e------cCcEEEEEEecC-CCEE
Q 043172 338 AKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK---M------NGTVRSLAFADD-GKQL 407 (564)
Q Consensus 338 ~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~---~------~~~V~~l~~spd-g~~l 407 (564)
.++.....+. .-|++++|+|+|++.++|+.+|.+++|+....++..... + ...|+++.|.|. ...+
T Consensus 442 ~~Vv~W~Dl~----~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~v 517 (712)
T KOG0283|consen 442 KKVVDWNDLR----DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEV 517 (712)
T ss_pred CeeEeehhhh----hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeE
Confidence 8876544433 269999999999999999999999999999888776654 1 237999999984 4468
Q ss_pred EEEeCCCeEEEEECCCCceeEEEeecCCcc-eEEEEECCCCCEEEEEeCCCcEEEEeCCcc
Q 043172 408 LSSGGDGQVYHWDLRTRTCIHRAVDEGCIN-GTALCTSPDGTFFAAGSDSGIVNVYNRQEF 467 (564)
Q Consensus 408 ~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~-i~~l~~sp~g~~lasgs~dg~V~iwd~~~~ 467 (564)
++.+.|..|+|||.+....+..+.+..... -....|+.+|++|++|+.|..|+||++...
T Consensus 518 LVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 518 LVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred EEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence 888899999999999888888888654332 256789999999999999999999998543
No 136
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.89 E-value=4.9e-22 Score=200.55 Aligned_cols=129 Identities=16% Similarity=0.230 Sum_probs=105.8
Q ss_pred eeecccCCCCCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEEecCCCCcee----EEEEeCCcCeEEEEEeeCCCEEEEEe
Q 043172 251 RLIDANADESSTGPINSVQFHR-NAQLLLVAGLDRRLRFFQIDGKRNTKI----QSIFLEDCPVRKASFLPDGSQAIIAG 325 (564)
Q Consensus 251 rl~~~~~~~~h~~~V~~l~fsp-dg~~l~s~s~dg~I~lwd~~~~~~~~~----~~~~~~~~~I~~l~fspdg~~l~s~~ 325 (564)
+.+++....+|...|+.+.|+| ...+||||+.|..|+||.+..+..+.+ ..+.+..-.|.++.|+|...-|++.+
T Consensus 68 ~~r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~ 147 (1012)
T KOG1445|consen 68 RTRDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASG 147 (1012)
T ss_pred cccccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEec
Confidence 5556777789999999999999 556899999999999999973332222 12333456788999999777777778
Q ss_pred CCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 043172 326 RRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKT 382 (564)
Q Consensus 326 ~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t 382 (564)
..|.++|||+.+++. +..+.+|.. .|.+..|+.||.+|++++.|..|+|||.+.
T Consensus 148 a~g~v~i~D~stqk~--~~el~~h~d-~vQSa~WseDG~llatscKdkqirifDPRa 201 (1012)
T KOG1445|consen 148 AHGSVYITDISTQKT--AVELSGHTD-KVQSADWSEDGKLLATSCKDKQIRIFDPRA 201 (1012)
T ss_pred cCceEEEEEcccCce--eecccCCch-hhhccccccCCceEeeecCCcceEEeCCcc
Confidence 889999999999986 556777776 699999999999999999999999999864
No 137
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.89 E-value=1.6e-21 Score=197.65 Aligned_cols=288 Identities=17% Similarity=0.186 Sum_probs=213.1
Q ss_pred eEEEEcC---CCCEEEEEeCCCcEEEEEecCCCCc----eeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCC
Q 043172 266 NSVQFHR---NAQLLLVAGLDRRLRFFQIDGKRNT----KIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKA 338 (564)
Q Consensus 266 ~~l~fsp---dg~~l~s~s~dg~I~lwd~~~~~~~----~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~ 338 (564)
.+..|++ ...+|+.+..+|.|.+++....... .+.....|...|..+.|.|....|++++.|.++++||+.++
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s 132 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS 132 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccc
Confidence 3366766 3458899999999999998643322 23445679999999999997778889999999999999999
Q ss_pred ceeeeccccccCCcceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCc--------------------EEEEe-------e
Q 043172 339 KADKIGPLVGREEKSLEFFEVSPD-SSVIAFVGNEGYILLVSSKTKE--------------------LIGTL-------K 390 (564)
Q Consensus 339 ~~~~~~~~~~~~~~~v~~~~~spd-g~~la~~~~dg~I~lwd~~t~~--------------------~~~~~-------~ 390 (564)
.+.....+.||.. .|.+++|.|. ...|++|+.||.|.|||++... ....+ +
T Consensus 133 ~l~G~~~~~GH~~-SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~k 211 (720)
T KOG0321|consen 133 RLVGGRLNLGHTG-SVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWK 211 (720)
T ss_pred eeecceeeccccc-ccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccc
Confidence 8876655677776 8999999995 5678899999999999986322 00000 0
Q ss_pred -ecCcEEE---EEEecCCCEEEEEeC-CCeEEEEECCCCceeEEEee----------cCCcceEEEEECCCCCEEEEEeC
Q 043172 391 -MNGTVRS---LAFADDGKQLLSSGG-DGQVYHWDLRTRTCIHRAVD----------EGCINGTALCTSPDGTFFAAGSD 455 (564)
Q Consensus 391 -~~~~V~~---l~~spdg~~l~s~s~-dg~V~lwD~~~~~~~~~~~~----------~~~~~i~~l~~sp~g~~lasgs~ 455 (564)
+...|.+ +.+..|...|++++. |+.|++||++...+...... ....++++++....|.+|.+.+.
T Consensus 212 A~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt 291 (720)
T KOG0321|consen 212 AASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT 291 (720)
T ss_pred cccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec
Confidence 2233433 445557788998887 99999999998665433221 12456788888888998888888
Q ss_pred CCcEEEEeCCcccCCcceeeEEccccccc--eeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcE
Q 043172 456 SGIVNVYNRQEFLGGKRKPIKTIENLTTK--VDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPR 533 (564)
Q Consensus 456 dg~V~iwd~~~~~~~~~~~~~~~~~~~~~--I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~ 533 (564)
|+.|+.|++... ...|+..+.++... ...-..+|++.+|++|+. +...++|.+.+...... ...+|...|+
T Consensus 292 D~sIy~ynm~s~---s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSs--d~~ayiw~vs~~e~~~~--~l~Ght~eVt 364 (720)
T KOG0321|consen 292 DNSIYFYNMRSL---SISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSS--DEQAYIWVVSSPEAPPA--LLLGHTREVT 364 (720)
T ss_pred CCcEEEEecccc---CcCchhhccCcccceeeeeeecCCCCceEeccCC--CcceeeeeecCccCChh--hhhCcceEEE
Confidence 999999999874 23455555443321 112245899999999999 99999999988765432 3456778899
Q ss_pred EEEEeCCC-CEEEEEcCCCeEEEEEcCCC
Q 043172 534 CLDFSPGG-GFMAVGNAAGKVFLYKLNHY 561 (564)
Q Consensus 534 ~l~fspdg-~~Lasgs~dG~V~lw~l~~~ 561 (564)
+++|.|.- .-++++++|-++.||++..+
T Consensus 365 ~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 365 TVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred EEeeccccCCCceeeccCcceEEEeccCc
Confidence 99998842 34677799999999999654
No 138
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.89 E-value=4.7e-21 Score=180.10 Aligned_cols=277 Identities=15% Similarity=0.123 Sum_probs=208.6
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEEecCC------CC----ceeEEEE-eCCcCeEEEEEe-------eCCCEEEEE
Q 043172 263 GPINSVQFHRNAQLLLVAGLDRRLRFFQIDGK------RN----TKIQSIF-LEDCPVRKASFL-------PDGSQAIIA 324 (564)
Q Consensus 263 ~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~------~~----~~~~~~~-~~~~~I~~l~fs-------pdg~~l~s~ 324 (564)
.-...+.|+|||..|++-+.|..+++|++... .. ....+++ .....|+..+|- |+.+++++.
T Consensus 50 nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s 129 (406)
T KOG2919|consen 50 NFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS 129 (406)
T ss_pred hhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeec
Confidence 35667899999999999999999999998421 00 1111121 234567777775 677899999
Q ss_pred eCCCeEEEEECCCCceeeeccccccCC--cceEEEEEcCCCCEEEEEeCCCeEEEEEC-CCCcEEE---Eeee-----cC
Q 043172 325 GRRKFFYSLDLVKAKADKIGPLVGREE--KSLEFFEVSPDSSVIAFVGNEGYILLVSS-KTKELIG---TLKM-----NG 393 (564)
Q Consensus 325 ~~dg~i~iwdl~~~~~~~~~~~~~~~~--~~v~~~~~spdg~~la~~~~dg~I~lwd~-~t~~~~~---~~~~-----~~ 393 (564)
+++.-|++||.-+|+.........|.. ....+++|+|||.+|++| ....|+++|+ +.|.... ++.+ .+
T Consensus 130 sr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~g 208 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKG 208 (406)
T ss_pred cccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccc
Confidence 999999999999998766555555443 345789999999999876 5689999999 5554322 2223 57
Q ss_pred cEEEEEEecC-CCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeC-CCcEEEEeCCcccCCc
Q 043172 394 TVRSLAFADD-GKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSD-SGIVNVYNRQEFLGGK 471 (564)
Q Consensus 394 ~V~~l~~spd-g~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~-dg~V~iwd~~~~~~~~ 471 (564)
-|.+++|+|. ...+++++....+-||.-..+.++..+.. +..+|+.++|.++|+.|.+|+. +..|-.||++..
T Consensus 209 iisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llgg-h~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~---- 283 (406)
T KOG2919|consen 209 IISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGG-HGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYS---- 283 (406)
T ss_pred eeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecc-cCCCeeeEEeccCcCeecccccCCCeEEEEeehhc----
Confidence 7899999994 55889998888888888777787776664 4458999999999999999975 678999999964
Q ss_pred ceeeEEcccccc-ceeEEEE--cCCCcEEEEEecCCCCeEEEEEcCC-CceeccCCCCCCCCCCcEEEEEeCCCCEEEEE
Q 043172 472 RKPIKTIENLTT-KVDFMKF--NNDAQILAICSTMKKNSLKLIHIPS-YNVFSNWPPANRNLQYPRCLDFSPGGGFMAVG 547 (564)
Q Consensus 472 ~~~~~~~~~~~~-~I~~l~f--spdg~~La~~s~~~d~~I~lwdl~s-~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasg 547 (564)
..|+..+..|.+ .-..|.| .|+|++|++|+. +|.|++||+.. +.....++. +..-|+.++++|--.++|++
T Consensus 284 ~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~t--dG~V~vwdlk~~gn~~sv~~~---~sd~vNgvslnP~mpilats 358 (406)
T KOG2919|consen 284 RDPVYALERHVGDTNQRILFDLDPKGEILASGDT--DGSVRVWDLKDLGNEVSVTGN---YSDTVNGVSLNPIMPILATS 358 (406)
T ss_pred cchhhhhhhhccCccceEEEecCCCCceeeccCC--CccEEEEecCCCCCccccccc---ccccccceecCcccceeeec
Confidence 477778877766 3334444 688999999988 99999999987 443333332 33668999999987888877
Q ss_pred cCC
Q 043172 548 NAA 550 (564)
Q Consensus 548 s~d 550 (564)
+..
T Consensus 359 sGq 361 (406)
T KOG2919|consen 359 SGQ 361 (406)
T ss_pred cCc
Confidence 543
No 139
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=7.3e-21 Score=200.34 Aligned_cols=245 Identities=16% Similarity=0.194 Sum_probs=196.9
Q ss_pred EeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 043172 303 FLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKT 382 (564)
Q Consensus 303 ~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t 382 (564)
..|....+.++|.|+|.+|++++.+|.|++|+.......+ .........|.+++. .+++|++++.+++|.+|...+
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P--~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps 85 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEP--ETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPS 85 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCC--chhhccCceeEEEee--cccceEEeeccceEEEeeCCC
Confidence 3577778999999999999999999999999977652111 111112224555544 566999999999999999998
Q ss_pred CcEEEEee-ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEE
Q 043172 383 KELIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNV 461 (564)
Q Consensus 383 ~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~i 461 (564)
++.-..+. ..-++++++|+.+|++++.||.|-.|++.++........+..+. .++.++.|+|++.+||+.+.||.|+|
T Consensus 86 ~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~-apVl~l~~~p~~~fLAvss~dG~v~i 164 (933)
T KOG1274|consen 86 GEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHD-APVLQLSYDPKGNFLAVSSCDGKVQI 164 (933)
T ss_pred CCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccC-CceeeeeEcCCCCEEEEEecCceEEE
Confidence 87765444 66789999999999999999999999999999888777776554 48999999999999999999999999
Q ss_pred EeCCcccCCcceeeEEccc--------cccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcE
Q 043172 462 YNRQEFLGGKRKPIKTIEN--------LTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPR 533 (564)
Q Consensus 462 wd~~~~~~~~~~~~~~~~~--------~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~ 533 (564)
|++..+ ...+++.+ ....+..++|+|+|..|++.+. ++.|++|+..++.....+.....+ ..++
T Consensus 165 w~~~~~-----~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~--d~~Vkvy~r~~we~~f~Lr~~~~s-s~~~ 236 (933)
T KOG1274|consen 165 WDLQDG-----ILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV--DNTVKVYSRKGWELQFKLRDKLSS-SKFS 236 (933)
T ss_pred EEcccc-----hhhhhcccCCccccccccceeeeeeecCCCCeEEeecc--CCeEEEEccCCceeheeecccccc-cceE
Confidence 999986 44444432 1456778999999766666666 899999999998876655443333 3489
Q ss_pred EEEEeCCCCEEEEEcCCCeEEEEEcCC
Q 043172 534 CLDFSPGGGFMAVGNAAGKVFLYKLNH 560 (564)
Q Consensus 534 ~l~fspdg~~Lasgs~dG~V~lw~l~~ 560 (564)
.++|||+|.|||+++.+|.|.||++.+
T Consensus 237 ~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 237 DLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred EEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 999999999999999999999999984
No 140
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.88 E-value=5.6e-22 Score=195.53 Aligned_cols=240 Identities=11% Similarity=0.093 Sum_probs=201.6
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCce
Q 043172 261 STGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKA 340 (564)
Q Consensus 261 h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~ 340 (564)
..+-|.++.++|||+.|++||.-.++.|||+...+...-..+....-..++++.+||.+..++++.||.|.|||+.+...
T Consensus 464 rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~ 543 (705)
T KOG0639|consen 464 RDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTL 543 (705)
T ss_pred cccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccccee
Confidence 35679999999999999999999999999998655443334444445678899999999999999999999999998876
Q ss_pred eeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEEeCCCeEEEEE
Q 043172 341 DKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSGGDGQVYHWD 420 (564)
Q Consensus 341 ~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s~dg~V~lwD 420 (564)
+..+.||.. .+.|+.++++|..|.+|+-|.+|+-||++++..+........|.++.++|++.+|++|-.++.|.+..
T Consensus 544 --VrqfqGhtD-GascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh 620 (705)
T KOG0639|consen 544 --VRQFQGHTD-GASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLH 620 (705)
T ss_pred --eecccCCCC-CceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEe
Confidence 557889887 69999999999999999999999999999998887777788999999999999999999999999888
Q ss_pred CCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEE
Q 043172 421 LRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAIC 500 (564)
Q Consensus 421 ~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~ 500 (564)
...... ..+. .+...|.++.|.+.|+|+++.+.|..++.|....+ ..+.... ...+|.++.+|.|.+++++|
T Consensus 621 ~skp~k-yqlh-lheScVLSlKFa~cGkwfvStGkDnlLnawrtPyG-----asiFqsk-E~SsVlsCDIS~ddkyIVTG 692 (705)
T KOG0639|consen 621 TSKPEK-YQLH-LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG-----ASIFQSK-ESSSVLSCDISFDDKYIVTG 692 (705)
T ss_pred cCCccc-eeec-ccccEEEEEEecccCceeeecCchhhhhhccCccc-----cceeecc-ccCcceeeeeccCceEEEec
Confidence 764432 2233 33446899999999999999999999999998877 5555555 36789999999999999999
Q ss_pred ecCCCCeEEEEEc
Q 043172 501 STMKKNSLKLIHI 513 (564)
Q Consensus 501 s~~~d~~I~lwdl 513 (564)
|+ +....||.+
T Consensus 693 SG--dkkATVYeV 703 (705)
T KOG0639|consen 693 SG--DKKATVYEV 703 (705)
T ss_pred CC--CcceEEEEE
Confidence 99 555555543
No 141
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.2e-21 Score=191.85 Aligned_cols=244 Identities=17% Similarity=0.215 Sum_probs=196.8
Q ss_pred CCCCCCeeEEEEcCCCC-EEEEEeCCCcEEEEEecCCCCceeEEEEeCC-cCeEEEEEeeCCCEEEEEeCCCeEEEEECC
Q 043172 259 ESSTGPINSVQFHRNAQ-LLLVAGLDRRLRFFQIDGKRNTKIQSIFLED-CPVRKASFLPDGSQAIIAGRRKFFYSLDLV 336 (564)
Q Consensus 259 ~~h~~~V~~l~fspdg~-~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~-~~I~~l~fspdg~~l~s~~~dg~i~iwdl~ 336 (564)
+--..||.+++|+|+|. .++++|....++.||+......++..+.++. ..+.....+|++++|+..|..|+|++....
T Consensus 254 ~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhak 333 (514)
T KOG2055|consen 254 HLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAK 333 (514)
T ss_pred eeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhh
Confidence 34567999999999999 9999999999999999876655555555543 346677889999999999999999999998
Q ss_pred CCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeeecCcE--EEEEEecCCCEEEEEeCCC
Q 043172 337 KAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLKMNGTV--RSLAFADDGKQLLSSGGDG 414 (564)
Q Consensus 337 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~~~~~V--~~l~~spdg~~l~s~s~dg 414 (564)
++.......+.| .|..++|+.+++.|++++.+|.|++||+++..+++.+...+.| +++|.++++.+|++|+..|
T Consensus 334 T~eli~s~KieG----~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~G 409 (514)
T KOG2055|consen 334 TKELITSFKIEG----VVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSG 409 (514)
T ss_pred hhhhhheeeecc----EEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcc
Confidence 888644433433 6899999999999999999999999999999999999877766 5667778999999999999
Q ss_pred eEEEEECCC------CceeEEEeecCCcceEEEEECCCCCEEEEEeC--CCcEEEEeCCcccCCcceeeEEcc---cccc
Q 043172 415 QVYHWDLRT------RTCIHRAVDEGCINGTALCTSPDGTFFAAGSD--SGIVNVYNRQEFLGGKRKPIKTIE---NLTT 483 (564)
Q Consensus 415 ~V~lwD~~~------~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~--dg~V~iwd~~~~~~~~~~~~~~~~---~~~~ 483 (564)
.|.|||..+ .+++..+.. -...|+++.|+|+++.||.+|. ...+++..+.+. .....+. ...+
T Consensus 410 iVNIYd~~s~~~s~~PkPik~~dN-Ltt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~-----TVFsNfP~~n~~vg 483 (514)
T KOG2055|consen 410 IVNIYDGNSCFASTNPKPIKTVDN-LTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSC-----TVFSNFPTSNTKVG 483 (514)
T ss_pred eEEEeccchhhccCCCCchhhhhh-hheeeeeeeeCcchhhhhhhhhccccceEEEeccce-----eeeccCCCCCCccc
Confidence 999999753 334433332 2346899999999999998875 567888888765 3333232 2346
Q ss_pred ceeEEEEcCCCcEEEEEecCCCCeEEEEEcC
Q 043172 484 KVDFMKFNNDAQILAICSTMKKNSLKLIHIP 514 (564)
Q Consensus 484 ~I~~l~fspdg~~La~~s~~~d~~I~lwdl~ 514 (564)
.|+||+|||.|.+||+|.. .|.|.||.+.
T Consensus 484 ~vtc~aFSP~sG~lAvGNe--~grv~l~kL~ 512 (514)
T KOG2055|consen 484 HVTCMAFSPNSGYLAVGNE--AGRVHLFKLH 512 (514)
T ss_pred ceEEEEecCCCceEEeecC--CCceeeEeec
Confidence 7899999999999999998 8999999875
No 142
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.88 E-value=1.3e-21 Score=192.72 Aligned_cols=271 Identities=14% Similarity=0.163 Sum_probs=205.3
Q ss_pred EEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEE--eCCCeEEEEECCCC--ceeeeccccccCCcce
Q 043172 279 VAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIA--GRRKFFYSLDLVKA--KADKIGPLVGREEKSL 354 (564)
Q Consensus 279 s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~--~~dg~i~iwdl~~~--~~~~~~~~~~~~~~~v 354 (564)
.++....++|||+..........-+.....+.+++|+.... |+++ +.|..+.+|.-... .+..+....+.. -
T Consensus 7 ~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~---~ 82 (673)
T KOG4378|consen 7 VASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDN---A 82 (673)
T ss_pred eeccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccch---H
Confidence 34445579999997543322222222233488999987654 4444 46788999965432 233333333332 3
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeec
Q 043172 355 EFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDE 433 (564)
Q Consensus 355 ~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~ 433 (564)
.|++......++++||..++|+|||++...+.+.++ |...|+++.++-...+|++++..|.|.|..+.++.....|...
T Consensus 83 ~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~ 162 (673)
T KOG4378|consen 83 FCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTID 162 (673)
T ss_pred HHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecC
Confidence 344444556899999999999999999777777777 8999999999999999999999999999999999888888877
Q ss_pred CCcceEEEEECCCCC-EEEEEeCCCcEEEEeCCcccCCcceeeEE-ccccccceeEEEEcCCCcEEE-EEecCCCCeEEE
Q 043172 434 GCINGTALCTSPDGT-FFAAGSDSGIVNVYNRQEFLGGKRKPIKT-IENLTTKVDFMKFNNDAQILA-ICSTMKKNSLKL 510 (564)
Q Consensus 434 ~~~~i~~l~~sp~g~-~lasgs~dg~V~iwd~~~~~~~~~~~~~~-~~~~~~~I~~l~fspdg~~La-~~s~~~d~~I~l 510 (564)
.+..+.-+.|+|..+ +|.+++.+|.|.+||+... .|+.. ...|..+...|+|+|....|+ +.+. |..|.+
T Consensus 163 sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~-----sp~~~~~~~HsAP~~gicfspsne~l~vsVG~--Dkki~~ 235 (673)
T KOG4378|consen 163 SGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGM-----SPIFHASEAHSAPCRGICFSPSNEALLVSVGY--DKKINI 235 (673)
T ss_pred CCCeEEEeecccccceeeEeeccCCeEEEEeccCC-----CcccchhhhccCCcCcceecCCccceEEEecc--cceEEE
Confidence 666677899999877 5667899999999999876 55554 467999999999999776554 4444 999999
Q ss_pred EEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCCCCCC
Q 043172 511 IHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNHYHHA 564 (564)
Q Consensus 511 wdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~~~~~ 564 (564)
||+.+......+... .+.++++|+++|.+|++|+..|.|..||++..+.|
T Consensus 236 yD~~s~~s~~~l~y~----~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~P 285 (673)
T KOG4378|consen 236 YDIRSQASTDRLTYS----HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAP 285 (673)
T ss_pred eecccccccceeeec----CCcceeeecCCceEEEeecCCceEEEEecccCCCC
Confidence 999876655544322 56789999999999999999999999999877654
No 143
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=9.9e-21 Score=176.99 Aligned_cols=252 Identities=10% Similarity=0.144 Sum_probs=192.3
Q ss_pred CCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecC--CCCceeEEEEeCCcCeEEEEEee--CCCEEEEEeCCCeEEEE
Q 043172 258 DESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDG--KRNTKIQSIFLEDCPVRKASFLP--DGSQAIIAGRRKFFYSL 333 (564)
Q Consensus 258 ~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~--~~~~~~~~~~~~~~~I~~l~fsp--dg~~l~s~~~dg~i~iw 333 (564)
..+|..-|+|+.|.+.|+.+|+|+.|++|+||+... ++..+......|.+.|..+.|.+ -|+.+++++.|+++.||
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 456999999999999999999999999999999643 34556777889999999999975 58999999999999999
Q ss_pred ECCC-------CceeeeccccccCCcceEEEEEcCC--CCEEEEEeCCCeEEEEECCCCc------EEEEee--------
Q 043172 334 DLVK-------AKADKIGPLVGREEKSLEFFEVSPD--SSVIAFVGNEGYILLVSSKTKE------LIGTLK-------- 390 (564)
Q Consensus 334 dl~~-------~~~~~~~~~~~~~~~~v~~~~~spd--g~~la~~~~dg~I~lwd~~t~~------~~~~~~-------- 390 (564)
.-.. .+..+...+.... ..|..+.|.|. |-.||+++.||+++||+.-..- +...+.
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~Dsr-ssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~ 167 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSR-SSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGK 167 (361)
T ss_pred eecccccccccceeEEEEEeecCC-cceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccc
Confidence 7521 1223333343333 47999999995 7789999999999999875432 222222
Q ss_pred ecCcEEEEEEecC---CCEEEEEeCC-----CeEEEEECCCCc--e--eEEEeecCCcceEEEEECCC-C---CEEEEEe
Q 043172 391 MNGTVRSLAFADD---GKQLLSSGGD-----GQVYHWDLRTRT--C--IHRAVDEGCINGTALCTSPD-G---TFFAAGS 454 (564)
Q Consensus 391 ~~~~V~~l~~spd---g~~l~s~s~d-----g~V~lwD~~~~~--~--~~~~~~~~~~~i~~l~~sp~-g---~~lasgs 454 (564)
+..+..|+.|+|. ..+|++|+.+ +.++||...... . +..+. .+..+|+.|+|.|+ | ..||+++
T Consensus 168 ~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~-d~~dpI~di~wAPn~Gr~y~~lAvA~ 246 (361)
T KOG2445|consen 168 NKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELP-DHTDPIRDISWAPNIGRSYHLLAVAT 246 (361)
T ss_pred ccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcC-CCCCcceeeeeccccCCceeeEEEee
Confidence 4457889999973 4577777655 478888765432 2 23344 44558999999997 3 3799999
Q ss_pred CCCcEEEEeCCccc---------------CCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcC
Q 043172 455 DSGIVNVYNRQEFL---------------GGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIP 514 (564)
Q Consensus 455 ~dg~V~iwd~~~~~---------------~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~ 514 (564)
.|| |+||.+.... .-..+.+..+.+|.+.|+.+.|+-.|..|++.+. ||.||+|...
T Consensus 247 kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGd--DG~VRLWkan 318 (361)
T KOG2445|consen 247 KDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGD--DGCVRLWKAN 318 (361)
T ss_pred cCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCC--Cceeeehhhh
Confidence 999 9999998421 0123455667899999999999999999998887 9999999864
No 144
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.88 E-value=4.9e-21 Score=185.10 Aligned_cols=288 Identities=19% Similarity=0.258 Sum_probs=217.3
Q ss_pred CCCeeEEEEcCCCC-EEEEEeCCCcEEEEEecCCC-------CceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEE
Q 043172 262 TGPINSVQFHRNAQ-LLLVAGLDRRLRFFQIDGKR-------NTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSL 333 (564)
Q Consensus 262 ~~~V~~l~fspdg~-~l~s~s~dg~I~lwd~~~~~-------~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iw 333 (564)
..+|.++.|+++.. .|+|||.|..|+||.+.... ...+..+..|...|+++.|+|+|..|++|+.+|.+.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 46899999999876 99999999999999985321 22345667899999999999999999999999999999
Q ss_pred ECC--------C------CceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEE
Q 043172 334 DLV--------K------AKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSL 398 (564)
Q Consensus 334 dl~--------~------~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l 398 (564)
-.. + ........+.+|.. .|..++|+|++.++++++-|..+++||+..|+....+. |...|..+
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~-diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgv 171 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRD-DIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGV 171 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEeccccc-chhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccccccee
Confidence 876 2 11112223445544 68899999999999999999999999999999999888 88999999
Q ss_pred EEecCCCEEEEEeCCCeEEEEECCCCceeEEEe---------------------ec-CCcceEEEEECCCCCEEEEEeC-
Q 043172 399 AFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAV---------------------DE-GCINGTALCTSPDGTFFAAGSD- 455 (564)
Q Consensus 399 ~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~---------------------~~-~~~~i~~l~~sp~g~~lasgs~- 455 (564)
+|.|-++++++-+.|...+.+.+...+.+.... +. ...-...++|+|+|.++++.+.
T Consensus 172 awDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~ 251 (434)
T KOG1009|consen 172 AWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGL 251 (434)
T ss_pred ecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccce
Confidence 999999999999998877777766543332221 00 0111346789999999987642
Q ss_pred ---CC-----cEEEEeCCcccCCcceeeEEccccccceeEEEEcC------------------CCcEEEEEecCCCCeEE
Q 043172 456 ---SG-----IVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNN------------------DAQILAICSTMKKNSLK 509 (564)
Q Consensus 456 ---dg-----~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fsp------------------dg~~La~~s~~~d~~I~ 509 (564)
.+ ..++|+.... .+|+..+.....+...+.|+| -+-.+|+++ .+.|.
T Consensus 252 ~~~g~~~~~n~tYvfsrk~l----~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt---~~svy 324 (434)
T KOG1009|consen 252 FKVGGGVFRNTSYVFSRKDL----KRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT---KNSVY 324 (434)
T ss_pred eeeCCceeeceeEeeccccc----cCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee---cceEE
Confidence 22 3456665432 366666666666666666554 233456666 58999
Q ss_pred EEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q 043172 510 LIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLN 559 (564)
Q Consensus 510 lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~ 559 (564)
|||..+..++... .+-|...|+.++|+++|.+|++.+.||...+-.+.
T Consensus 325 vydtq~~~P~~~v--~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe 372 (434)
T KOG1009|consen 325 VYDTQTLEPLAVV--DNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFE 372 (434)
T ss_pred EeccccccceEEE--eeeeeeeecceeecCCCcEEEEeccCCceEEEEEc
Confidence 9999887766543 34466789999999999999999999987765543
No 145
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.88 E-value=2.4e-21 Score=198.03 Aligned_cols=244 Identities=12% Similarity=0.126 Sum_probs=204.3
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEee---CCCEEEEEeCCCeEEEEECCC
Q 043172 261 STGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLP---DGSQAIIAGRRKFFYSLDLVK 337 (564)
Q Consensus 261 h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fsp---dg~~l~s~~~dg~i~iwdl~~ 337 (564)
....|.|++.+|+|++||+|..-|+|+||++.. ......+..|...|.|+.|+. ..+.|+++++|+.|+|||+..
T Consensus 458 ~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~--l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r 535 (1080)
T KOG1408|consen 458 SRFGFRALAVSPDGQHLASGDRGGNLRVYDLQE--LEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR 535 (1080)
T ss_pred cccceEEEEECCCcceecccCccCceEEEEehh--hhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc
Confidence 567899999999999999999999999999973 446667888999999999984 357889999999999999875
Q ss_pred CceeeeccccccCCcceEEEEEcCCC--CEEEEEeCCCeEEEEECCCCcEEEEee------ecCcEEEEEEecCCCEEEE
Q 043172 338 AKADKIGPLVGREEKSLEFFEVSPDS--SVIAFVGNEGYILLVSSKTKELIGTLK------MNGTVRSLAFADDGKQLLS 409 (564)
Q Consensus 338 ~~~~~~~~~~~~~~~~v~~~~~spdg--~~la~~~~dg~I~lwd~~t~~~~~~~~------~~~~V~~l~~spdg~~l~s 409 (564)
.- ..+.++.+|.. .|+++.|...| ..++++|.|..|.+--.....-...+. ....+++++..|..+++++
T Consensus 536 ny-~l~qtld~HSs-sITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t 613 (1080)
T KOG1408|consen 536 NY-DLVQTLDGHSS-SITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVT 613 (1080)
T ss_pred cc-chhhhhccccc-ceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEE
Confidence 43 33556777765 89999998877 678889888877653322111111111 2457899999999999999
Q ss_pred EeCCCeEEEEECCCCceeEEEeecCC--cceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeE
Q 043172 410 SGGDGQVYHWDLRTRTCIHRAVDEGC--INGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDF 487 (564)
Q Consensus 410 ~s~dg~V~lwD~~~~~~~~~~~~~~~--~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~ 487 (564)
++.|..|+||++.+++..+.|...+. .....+...|.|.|||+.+.|.++.+||..++ .++.+..+|...|+.
T Consensus 614 ~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg-----EcvA~m~GHsE~VTG 688 (1080)
T KOG1408|consen 614 VCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG-----ECVAQMTGHSEAVTG 688 (1080)
T ss_pred EecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc-----hhhhhhcCcchheee
Confidence 99999999999999999999986432 24567788999999999999999999999998 999999999999999
Q ss_pred EEEcCCCcEEEEEecCCCCeEEEEEcCC
Q 043172 488 MKFNNDAQILAICSTMKKNSLKLIHIPS 515 (564)
Q Consensus 488 l~fspdg~~La~~s~~~d~~I~lwdl~s 515 (564)
+.|.+|.++|++.++ ||.|.||.++.
T Consensus 689 ~kF~nDCkHlISvsg--DgCIFvW~lp~ 714 (1080)
T KOG1408|consen 689 VKFLNDCKHLISVSG--DGCIFVWKLPL 714 (1080)
T ss_pred eeecccchhheeecC--CceEEEEECch
Confidence 999999999999999 99999999975
No 146
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.87 E-value=4.6e-21 Score=188.94 Aligned_cols=262 Identities=18% Similarity=0.228 Sum_probs=205.1
Q ss_pred CeeEEEEcCCCCEEEEE--eCCCcEEEEEecCCCCc--eeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCc
Q 043172 264 PINSVQFHRNAQLLLVA--GLDRRLRFFQIDGKRNT--KIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAK 339 (564)
Q Consensus 264 ~V~~l~fspdg~~l~s~--s~dg~I~lwd~~~~~~~--~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~ 339 (564)
.|.+++|+.... |+++ +.|..|++|.-+++... .+....+ ..-.|++......|+++||..+.|+|||+....
T Consensus 36 g~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~g--d~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl 112 (673)
T KOG4378|consen 36 GDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTG--DNAFCVACASQSLYEISGGQSGCVKIWDLRAKL 112 (673)
T ss_pred cceeeeccccce-EEEeecCCceeEEEecccCCCCccceeecccc--chHHHHhhhhcceeeeccCcCceeeehhhHHHH
Confidence 499999998764 4444 45889999987765322 2222222 233344444445899999999999999999554
Q ss_pred eeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeeec--CcEEEEEEecCCCE-EEEEeCCCeE
Q 043172 340 ADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLKMN--GTVRSLAFADDGKQ-LLSSGGDGQV 416 (564)
Q Consensus 340 ~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~~~--~~V~~l~~spdg~~-l~s~s~dg~V 416 (564)
+ ...+.+|. ..|+++.++....|||+++..|.|.|..+.+++....|.+. ..|+-+.|+|..++ |.+++.+|.|
T Consensus 113 ~--hr~lkdh~-stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~V 189 (673)
T KOG4378|consen 113 I--HRFLKDHQ-STVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAV 189 (673)
T ss_pred H--hhhccCCc-ceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeE
Confidence 4 33456666 48999999999999999999999999999999999899854 45678999997664 5577889999
Q ss_pred EEEECCCCceeEEEeecCCcceEEEEECCCC-CEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCc
Q 043172 417 YHWDLRTRTCIHRAVDEGCINGTALCTSPDG-TFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQ 495 (564)
Q Consensus 417 ~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g-~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~ 495 (564)
.+||+....++..+...|..+...|||+|.. .+|++.+.|..|++||++.. +...++. ...+.+.|+|+++|.
T Consensus 190 tlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~-----~s~~~l~-y~~Plstvaf~~~G~ 263 (673)
T KOG4378|consen 190 TLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQ-----ASTDRLT-YSHPLSTVAFSECGT 263 (673)
T ss_pred EEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccc-----cccceee-ecCCcceeeecCCce
Confidence 9999999999988888888889999999975 47888999999999999875 4444444 467899999999999
Q ss_pred EEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCC
Q 043172 496 ILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGG 541 (564)
Q Consensus 496 ~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg 541 (564)
+|++|+. .|.|..||++...... .+...|...|++++|-|.-
T Consensus 264 ~L~aG~s--~G~~i~YD~R~~k~Pv--~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 264 YLCAGNS--KGELIAYDMRSTKAPV--AVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred EEEeecC--CceEEEEecccCCCCc--eEeeecccceeEEEeeecc
Confidence 9999999 9999999998654322 2334556779999998753
No 147
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=1.9e-20 Score=183.02 Aligned_cols=244 Identities=17% Similarity=0.166 Sum_probs=184.2
Q ss_pred eEEEEEee-------CCCEEEEEeCCCeEEEEECCCCcee-eec------------------cccccCCcceEEEEEcCC
Q 043172 309 VRKASFLP-------DGSQAIIAGRRKFFYSLDLVKAKAD-KIG------------------PLVGREEKSLEFFEVSPD 362 (564)
Q Consensus 309 I~~l~fsp-------dg~~l~s~~~dg~i~iwdl~~~~~~-~~~------------------~~~~~~~~~v~~~~~spd 362 (564)
..|++|.. .|+++|.|+.+..|.|||+.-.... +.. ...+|. ..|..++|+..
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHT-davl~Ls~n~~ 254 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHT-DAVLALSWNRN 254 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccch-HHHHHHHhccc
Confidence 35777752 3689999999999999998632110 000 011232 24556777664
Q ss_pred -CCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEec-CCCEEEEEeCCCeEEEEECCCCce-eEEEeecCCcce
Q 043172 363 -SSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFAD-DGKQLLSSGGDGQVYHWDLRTRTC-IHRAVDEGCING 438 (564)
Q Consensus 363 -g~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~sp-dg~~l~s~s~dg~V~lwD~~~~~~-~~~~~~~~~~~i 438 (564)
.+.||+|+.|.+|++||+.++++..++. |.+.|.++.|+| ...+|++|+.|++|.+.|+|...+ -..|...+ .|
T Consensus 255 ~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g--~V 332 (463)
T KOG0270|consen 255 FRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDG--EV 332 (463)
T ss_pred cceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEecc--ce
Confidence 5689999999999999999999999999 788999999999 568999999999999999995332 33444444 46
Q ss_pred EEEEECCCCC-EEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCc-EEEEEecCCCCeEEEEEcCCC
Q 043172 439 TALCTSPDGT-FFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQ-ILAICSTMKKNSLKLIHIPSY 516 (564)
Q Consensus 439 ~~l~~sp~g~-~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~-~La~~s~~~d~~I~lwdl~s~ 516 (564)
-.++|.|... .+++++.||+|+-+|++.. .+|+.++..|..+|++|++++.-. +|++++. ++.|++|++...
T Consensus 333 Ekv~w~~~se~~f~~~tddG~v~~~D~R~~----~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~--d~~Vklw~~~~~ 406 (463)
T KOG0270|consen 333 EKVAWDPHSENSFFVSTDDGTVYYFDIRNP----GKPVWTLKAHDDEISGLSVNIQTPGLLSTAST--DKVVKLWKFDVD 406 (463)
T ss_pred EEEEecCCCceeEEEecCCceEEeeecCCC----CCceeEEEeccCCcceEEecCCCCcceeeccc--cceEEEEeecCC
Confidence 7899998754 6778889999999999975 389999999999999999998654 5666666 999999999754
Q ss_pred ceeccCCCCCCCCCCcEEEEEeCCCC-EEEEEcCCCeEEEEEcCCCC
Q 043172 517 NVFSNWPPANRNLQYPRCLDFSPGGG-FMAVGNAAGKVFLYKLNHYH 562 (564)
Q Consensus 517 ~~~~~~~~~~~~~~~V~~l~fspdg~-~Lasgs~dG~V~lw~l~~~~ 562 (564)
.... ...+.-..+...|+++.|+-. +||.|+..+.++||++.++.
T Consensus 407 ~~~~-v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 407 SPKS-VKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred CCcc-cccccccccceeecccCCCcceEEEecCccceEEEeecccCh
Confidence 3321 112222345577778888654 67888889999999997764
No 148
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=7.1e-22 Score=212.78 Aligned_cols=286 Identities=16% Similarity=0.219 Sum_probs=218.4
Q ss_pred eEEEEcCCCC-EEEEE----------eCCCcEEEEEecCCCCc----eeEEEEeCCcCeEEEEEeeCCCE----EEEEeC
Q 043172 266 NSVQFHRNAQ-LLLVA----------GLDRRLRFFQIDGKRNT----KIQSIFLEDCPVRKASFLPDGSQ----AIIAGR 326 (564)
Q Consensus 266 ~~l~fspdg~-~l~s~----------s~dg~I~lwd~~~~~~~----~~~~~~~~~~~I~~l~fspdg~~----l~s~~~ 326 (564)
-.++|+|.+. ++++| +.+.++-||.++..... .+.++. .....+.++|.+.|.. |+.|..
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~e 88 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLE 88 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeecccc
Confidence 3578899886 55544 33566777776533222 222222 3456789999987766 666779
Q ss_pred CCeEEEEECCC---C-ceeeeccccccCCcceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEEEEee---ecCcEEEE
Q 043172 327 RKFFYSLDLVK---A-KADKIGPLVGREEKSLEFFEVSPDS-SVIAFVGNEGYILLVSSKTKELIGTLK---MNGTVRSL 398 (564)
Q Consensus 327 dg~i~iwdl~~---~-~~~~~~~~~~~~~~~v~~~~~spdg-~~la~~~~dg~I~lwd~~t~~~~~~~~---~~~~V~~l 398 (564)
||.|.+||... + ....+.+...|. +.|..+.|++.. ++||+|+.+|.|.|||+...+.-.+.. ....|.++
T Consensus 89 dG~I~ly~p~~~~~~~~~~~la~~~~h~-G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~l 167 (1049)
T KOG0307|consen 89 DGNIVLYDPASIIANASEEVLATKSKHT-GPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCL 167 (1049)
T ss_pred CCceEEecchhhccCcchHHHhhhcccC-CceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEe
Confidence 99999999765 2 222233344444 489999999965 599999999999999998755443332 45789999
Q ss_pred EEecC-CCEEEEEeCCCeEEEEECCCCceeEEEeecCC-cceEEEEECCCCC-EEEEEeCC---CcEEEEeCCcccCCcc
Q 043172 399 AFADD-GKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGC-INGTALCTSPDGT-FFAAGSDS---GIVNVYNRQEFLGGKR 472 (564)
Q Consensus 399 ~~spd-g~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~-~~i~~l~~sp~g~-~lasgs~d---g~V~iwd~~~~~~~~~ 472 (564)
+|+.. .+.|++++.+|.+.|||++..+.+..+..... ..+..++|+|++. .|++++.| -.|.+||++.. .
T Consensus 168 sWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a----s 243 (1049)
T KOG0307|consen 168 SWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA----S 243 (1049)
T ss_pred ccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccccc----C
Confidence 99974 56788899999999999999888877776544 4578999999864 56666654 47999999864 4
Q ss_pred eeeEEccccccceeEEEEcCCC-cEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCC-EEEEEcCC
Q 043172 473 KPIKTIENLTTKVDFMKFNNDA-QILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGG-FMAVGNAA 550 (564)
Q Consensus 473 ~~~~~~~~~~~~I~~l~fspdg-~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~-~Lasgs~d 550 (564)
.|++++.+|...|.+|.|++.+ .+|++++. |+.|.+|+..+++++..+++.. .++..+.|+|... .+++++-+
T Consensus 244 sP~k~~~~H~~GilslsWc~~D~~lllSsgk--D~~ii~wN~~tgEvl~~~p~~~---nW~fdv~w~pr~P~~~A~asfd 318 (1049)
T KOG0307|consen 244 SPLKILEGHQRGILSLSWCPQDPRLLLSSGK--DNRIICWNPNTGEVLGELPAQG---NWCFDVQWCPRNPSVMAAASFD 318 (1049)
T ss_pred CchhhhcccccceeeeccCCCCchhhhcccC--CCCeeEecCCCceEeeecCCCC---cceeeeeecCCCcchhhhheec
Confidence 7888999999999999999977 66666665 9999999999999999888743 7899999999665 78889999
Q ss_pred CeEEEEEcCCCC
Q 043172 551 GKVFLYKLNHYH 562 (564)
Q Consensus 551 G~V~lw~l~~~~ 562 (564)
|+|.||.+....
T Consensus 319 gkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 319 GKISIYSLQGTD 330 (1049)
T ss_pred cceeeeeeecCC
Confidence 999999987543
No 149
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=6.7e-20 Score=171.99 Aligned_cols=256 Identities=15% Similarity=0.173 Sum_probs=185.2
Q ss_pred EEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeecccccc-CCcceEEEEEcCCCCEEEE-EeCCCeEEE
Q 043172 300 QSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGR-EEKSLEFFEVSPDSSVIAF-VGNEGYILL 377 (564)
Q Consensus 300 ~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~-~~~~v~~~~~spdg~~la~-~~~dg~I~l 377 (564)
..+.+|...|++++|+.||++|++++.|+.|++|++..-.......+... .....+.+.|+||-+-+++ +-....+++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV 159 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence 34678999999999999999999999999999999876432111111000 0113578999999765554 445568999
Q ss_pred EECCCC---cEEEE--------e--eecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEEC
Q 043172 378 VSSKTK---ELIGT--------L--KMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTS 444 (564)
Q Consensus 378 wd~~t~---~~~~~--------~--~~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~s 444 (564)
|-+... ..... + +|...|..+-....+.+|++++.|..|.+|+++ |+.+..+..... .-+..++|
T Consensus 160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~-~n~~aavS 237 (420)
T KOG2096|consen 160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQS-SNYDAAVS 237 (420)
T ss_pred EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccc-cccceeeC
Confidence 976422 11111 1 155567777777788999999999999999999 888877665443 44678899
Q ss_pred CCCCEEEEEeCCCcEEEEeCCcccC---CcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCC------
Q 043172 445 PDGTFFAAGSDSGIVNVYNRQEFLG---GKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPS------ 515 (564)
Q Consensus 445 p~g~~lasgs~dg~V~iwd~~~~~~---~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s------ 515 (564)
|+|++||+++-.--|+||.+--... .....+..+.+|...|..++|||++..+++.|. ||++||||+.-
T Consensus 238 P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSk--DG~wriwdtdVrY~~~q 315 (420)
T KOG2096|consen 238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSK--DGKWRIWDTDVRYEAGQ 315 (420)
T ss_pred CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEec--CCcEEEeeccceEecCC
Confidence 9999999999999999999743321 233556678999999999999999999999999 99999999852
Q ss_pred -CceeccC--CCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCCC
Q 043172 516 -YNVFSNW--PPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNHY 561 (564)
Q Consensus 516 -~~~~~~~--~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~~ 561 (564)
...+... |..... +....+..||+|+.||++. ...+.+|.....
T Consensus 316 Dpk~Lk~g~~pl~aag-~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g 362 (420)
T KOG2096|consen 316 DPKILKEGSAPLHAAG-SEPVRLELSPSGDSLAVSF-GSDLKVFASEDG 362 (420)
T ss_pred CchHhhcCCcchhhcC-CCceEEEeCCCCcEEEeec-CCceEEEEcccC
Confidence 1122222 112112 3345899999999998764 446888876553
No 150
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=3.3e-20 Score=173.87 Aligned_cols=243 Identities=11% Similarity=0.133 Sum_probs=181.8
Q ss_pred eEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE
Q 043172 309 VRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGT 388 (564)
Q Consensus 309 I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~ 388 (564)
..|+.|++.|.+|++|+.+|.|.|||+.+..+.+ +.+.+-.+|.+++||++|+.|++++.|..|.+||+..|.++..
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar---~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~r 102 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR---MLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKR 102 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhh---hhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeE
Confidence 6899999999999999999999999999987543 3333445899999999999999999999999999999999999
Q ss_pred eeecCcEEEEEEecCCC-EEEEEeCCCeEEEEECCCCceeEEE-eecCCc--ceEEEEECCCCCEEEEEeCCCcEEEEeC
Q 043172 389 LKMNGTVRSLAFADDGK-QLLSSGGDGQVYHWDLRTRTCIHRA-VDEGCI--NGTALCTSPDGTFFAAGSDSGIVNVYNR 464 (564)
Q Consensus 389 ~~~~~~V~~l~~spdg~-~l~s~s~dg~V~lwD~~~~~~~~~~-~~~~~~--~i~~l~~sp~g~~lasgs~dg~V~iwd~ 464 (564)
++.+++|..+.|+|... ..++.-.+..-.+.++..+.....- ...+.. ...+..|.+.|+|+++|...|.+.||+.
T Consensus 103 irf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a 182 (405)
T KOG1273|consen 103 IRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDA 182 (405)
T ss_pred EEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEec
Confidence 99999999999999543 3333333333455555442221111 111111 1233458899999999999999999999
Q ss_pred CcccCCcceeeEEccccc-cceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCcee---------ccCCCCCCCCCCcEE
Q 043172 465 QEFLGGKRKPIKTIENLT-TKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVF---------SNWPPANRNLQYPRC 534 (564)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~-~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~---------~~~~~~~~~~~~V~~ 534 (564)
.+. +++..++... ..|.++.|+..|++|++-+. |..||.|++..--.. ..+.... ....=.+
T Consensus 183 ~t~-----e~vas~rits~~~IK~I~~s~~g~~liiNts--DRvIR~ye~~di~~~~r~~e~e~~~K~qDvV-Nk~~Wk~ 254 (405)
T KOG1273|consen 183 ETL-----ECVASFRITSVQAIKQIIVSRKGRFLIINTS--DRVIRTYEISDIDDEGRDGEVEPEHKLQDVV-NKLQWKK 254 (405)
T ss_pred chh-----eeeeeeeechheeeeEEEEeccCcEEEEecC--CceEEEEehhhhcccCccCCcChhHHHHHHH-hhhhhhh
Confidence 987 8888877655 78999999999999999998 999999998632111 0000000 0012357
Q ss_pred EEEeCCCCEEEEEcC-CCeEEEEEcCCCC
Q 043172 535 LDFSPGGGFMAVGNA-AGKVFLYKLNHYH 562 (564)
Q Consensus 535 l~fspdg~~Lasgs~-dG~V~lw~l~~~~ 562 (564)
++||.+|.|+++|+. ...++||.-..+.
T Consensus 255 ccfs~dgeYv~a~s~~aHaLYIWE~~~Gs 283 (405)
T KOG1273|consen 255 CCFSGDGEYVCAGSARAHALYIWEKSIGS 283 (405)
T ss_pred eeecCCccEEEeccccceeEEEEecCCcc
Confidence 899999999988874 4569999876543
No 151
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.86 E-value=9.9e-20 Score=169.18 Aligned_cols=211 Identities=19% Similarity=0.192 Sum_probs=170.8
Q ss_pred eCCcCeEEEEEee-CCCEEEEEeCCCeEEEEECCCCcee----------ee---ccccccCCcceEEEEEcC-CCCEEEE
Q 043172 304 LEDCPVRKASFLP-DGSQAIIAGRRKFFYSLDLVKAKAD----------KI---GPLVGREEKSLEFFEVSP-DSSVIAF 368 (564)
Q Consensus 304 ~~~~~I~~l~fsp-dg~~l~s~~~dg~i~iwdl~~~~~~----------~~---~~~~~~~~~~v~~~~~sp-dg~~la~ 368 (564)
.|.+.|.++.+.+ .|+++++|+.||.|.+||++...-. .+ ..-.+|. -.|..+.|-| |..++.+
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hk-y~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHK-YAISSAIWYPIDTGMFTS 119 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccce-eeeeeeEEeeecCceeec
Confidence 3668888888887 7899999999999999999865310 00 0112233 4688888988 6678888
Q ss_pred EeCCCeEEEEECCCCcEEEEeeecCcEEEEEEecC---CCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECC
Q 043172 369 VGNEGYILLVSSKTKELIGTLKMNGTVRSLAFADD---GKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSP 445 (564)
Q Consensus 369 ~~~dg~I~lwd~~t~~~~~~~~~~~~V~~l~~spd---g~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp 445 (564)
++.|.++++||..|.+....|+.++.|.+-+|+|- ..++++|..+-.|++.|+.+|.+.+.+..+.. .|.++.|+|
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~-~vlaV~Wsp 198 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRD-GVLAVEWSP 198 (397)
T ss_pred ccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccC-ceEEEEecc
Confidence 99999999999999999999999999999999993 34677788888999999999999998886654 799999999
Q ss_pred CCCE-EEEEeCCCcEEEEeCCcccC----------CcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcC
Q 043172 446 DGTF-FAAGSDSGIVNVYNRQEFLG----------GKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIP 514 (564)
Q Consensus 446 ~g~~-lasgs~dg~V~iwd~~~~~~----------~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~ 514 (564)
...| |++|+.||.|++||++...+ ..+..+++-..|.+.|..++|+.+|.++++++. |+.+++|+..
T Consensus 199 ~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt--d~r~r~wn~~ 276 (397)
T KOG4283|consen 199 SSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT--DDRIRVWNME 276 (397)
T ss_pred CceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC--ccceEEeecc
Confidence 8774 67899999999999986521 122223334567889999999999999999998 9999999998
Q ss_pred CCce
Q 043172 515 SYNV 518 (564)
Q Consensus 515 s~~~ 518 (564)
+|..
T Consensus 277 ~G~n 280 (397)
T KOG4283|consen 277 SGRN 280 (397)
T ss_pred cCcc
Confidence 7653
No 152
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.86 E-value=7.4e-19 Score=179.47 Aligned_cols=273 Identities=10% Similarity=0.134 Sum_probs=186.1
Q ss_pred EEEeCCCcEEEEEecC-CCCceeEEEEeCCcCeEEEEEeeCCCEEEEEe-CCCeEEEEECC-CCceeeeccccccCCcce
Q 043172 278 LVAGLDRRLRFFQIDG-KRNTKIQSIFLEDCPVRKASFLPDGSQAIIAG-RRKFFYSLDLV-KAKADKIGPLVGREEKSL 354 (564)
Q Consensus 278 ~s~s~dg~I~lwd~~~-~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~-~dg~i~iwdl~-~~~~~~~~~~~~~~~~~v 354 (564)
++...++.|.+|++.. +....+..+.. .+....++++|++++|++++ .++.|.+|++. ++....+..... . ...
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~~-~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~-~-~~p 82 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVDV-PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPL-P-GSP 82 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEec-CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecC-C-CCc
Confidence 3446789999999963 23334555543 35677899999999998775 57889999987 344332222221 1 135
Q ss_pred EEEEEcCCCCEEEEEeC-CCeEEEEECCC-C---cEEEEeeecCcEEEEEEecCCCEEEEEe-CCCeEEEEECCCCceeE
Q 043172 355 EFFEVSPDSSVIAFVGN-EGYILLVSSKT-K---ELIGTLKMNGTVRSLAFADDGKQLLSSG-GDGQVYHWDLRTRTCIH 428 (564)
Q Consensus 355 ~~~~~spdg~~la~~~~-dg~I~lwd~~t-~---~~~~~~~~~~~V~~l~~spdg~~l~s~s-~dg~V~lwD~~~~~~~~ 428 (564)
..++++|++++|++++. ++.|.+|++.+ + +.+..+.+...+.+++++|+++++++++ .++.|.+||+.+...+.
T Consensus 83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~ 162 (330)
T PRK11028 83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLV 162 (330)
T ss_pred eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccc
Confidence 68999999999988764 78999999964 2 2233333344578889999999887665 46899999998633221
Q ss_pred -----EEeecCCcceEEEEECCCCCEEEEEeC-CCcEEEEeCCcccCCcceeeEEccc------cccceeEEEEcCCCcE
Q 043172 429 -----RAVDEGCINGTALCTSPDGTFFAAGSD-SGIVNVYNRQEFLGGKRKPIKTIEN------LTTKVDFMKFNNDAQI 496 (564)
Q Consensus 429 -----~~~~~~~~~i~~l~~sp~g~~lasgs~-dg~V~iwd~~~~~~~~~~~~~~~~~------~~~~I~~l~fspdg~~ 496 (564)
............++|+|+|+++++++. ++.|.+|++.... .....+..+.. +......+.|+|+|++
T Consensus 163 ~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~ 241 (330)
T PRK11028 163 AQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPH-GEIECVQTLDMMPADFSDTRWAADIHITPDGRH 241 (330)
T ss_pred ccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCC-CCEEEEEEEecCCCcCCCCccceeEEECCCCCE
Confidence 111112234568999999999988876 8999999997420 11133333321 1123346899999999
Q ss_pred EEEEecCCCCeEEEEEcCCCc----eeccCCCCCCCCCCcEEEEEeCCCCEEEEEcC-CCeEEEEEcC
Q 043172 497 LAICSTMKKNSLKLIHIPSYN----VFSNWPPANRNLQYPRCLDFSPGGGFMAVGNA-AGKVFLYKLN 559 (564)
Q Consensus 497 La~~s~~~d~~I~lwdl~s~~----~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~-dG~V~lw~l~ 559 (564)
|+++... ++.|.+|++.... .....++. ..+..+.|+|+|++|++++. +++|.+|++.
T Consensus 242 lyv~~~~-~~~I~v~~i~~~~~~~~~~~~~~~~----~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 242 LYACDRT-ASLISVFSVSEDGSVLSFEGHQPTE----TQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEEecCC-CCeEEEEEEeCCCCeEEEeEEEecc----ccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 9998643 7899999995432 23332222 24567899999999998875 8899999885
No 153
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.86 E-value=3.1e-20 Score=188.62 Aligned_cols=273 Identities=14% Similarity=0.162 Sum_probs=214.0
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeee
Q 043172 264 PINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKI 343 (564)
Q Consensus 264 ~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~ 343 (564)
.|+.++|-|||..|+.+. +..+.|||.+ .+..++++.+|...|+|++|+.+|+.+++|+.|+.|.+|...-....+
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~n--dG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~Lk- 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTS--DGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILK- 89 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCC--CcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceee-
Confidence 899999999999888775 5569999887 455889999999999999999999999999999999999865433321
Q ss_pred ccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEEeCCCeEEEEECCC
Q 043172 344 GPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRT 423 (564)
Q Consensus 344 ~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~ 423 (564)
+.|. ..|.|+.|+|-.+.|++++- ...-+|...... +...+....|.+.+|..||.+|+.|-.+|+|.+-+-.
T Consensus 90 ---YSH~-D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~-V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~- 162 (1081)
T KOG1538|consen 90 ---YSHN-DAIQCMSFNPITHQLASCSL-SDFGLWSPEQKS-VSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN- 162 (1081)
T ss_pred ---eccC-CeeeEeecCchHHHhhhcch-hhccccChhhhh-HHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCC-
Confidence 2333 48999999999999999875 456788765433 2333456789999999999999999999999998654
Q ss_pred CceeEEEee--cCCcceEEEEECCCC-----CEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcE
Q 043172 424 RTCIHRAVD--EGCINGTALCTSPDG-----TFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQI 496 (564)
Q Consensus 424 ~~~~~~~~~--~~~~~i~~l~~sp~g-----~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~ 496 (564)
+.....+.. ....+|.+++|+|+. ..+++.....++.+|.+.. +.+..-....-...|+.+.++|.+
T Consensus 163 gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG------~~Igk~r~L~FdP~CisYf~NGEy 236 (1081)
T KOG1538|consen 163 GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG------KQIGKDRALNFDPCCISYFTNGEY 236 (1081)
T ss_pred CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc------eeecccccCCCCchhheeccCCcE
Confidence 333333333 345579999999974 3778888888888888875 455544555666778999999999
Q ss_pred EEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q 043172 497 LAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLN 559 (564)
Q Consensus 497 La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~ 559 (564)
++.|+. ++.+++|.-. |-.+.+. .....+|++++..|++++++.|+.||+|-.|++-
T Consensus 237 ~LiGGs--dk~L~~fTR~-GvrLGTv---g~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 237 ILLGGS--DKQLSLFTRD-GVRLGTV---GEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred EEEccC--CCceEEEeec-CeEEeec---cccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 999998 8999998754 3333322 2234789999999999999999999999999873
No 154
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.85 E-value=2e-19 Score=184.22 Aligned_cols=308 Identities=13% Similarity=0.127 Sum_probs=218.0
Q ss_pred eeeeeeeecccCCCCCCCCeeEEEEcCCCC---EEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEE
Q 043172 246 LLEYSRLIDANADESSTGPINSVQFHRNAQ---LLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAI 322 (564)
Q Consensus 246 ~~d~~rl~~~~~~~~h~~~V~~l~fspdg~---~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~ 322 (564)
++|..+..-..+..+|.++|+|+.|-|+.. ++++|+.|++|.+|.+......++.++.+|... +++++..-....
T Consensus 38 v~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~--~~cv~a~~~~~~ 115 (764)
T KOG1063|consen 38 VADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKE--CVCVVARSSVMT 115 (764)
T ss_pred EeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCccee--EEEEEeeeeEEE
Confidence 444444444456789999999999999877 899999999999999985556677777775554 455553332333
Q ss_pred EEeCCCeEEEEECCCCceeeecccccc-CCcceEEEEEcCC-CC-EEEEEeCCCeEEEEECCCCcE--EEEee-ecCcEE
Q 043172 323 IAGRRKFFYSLDLVKAKADKIGPLVGR-EEKSLEFFEVSPD-SS-VIAFVGNEGYILLVSSKTKEL--IGTLK-MNGTVR 396 (564)
Q Consensus 323 s~~~dg~i~iwdl~~~~~~~~~~~~~~-~~~~v~~~~~spd-g~-~la~~~~dg~I~lwd~~t~~~--~~~~~-~~~~V~ 396 (564)
+.+.++.+++|+.+..+......+.-. ......|+++.|+ +. .++.|+.+..|.++.-.+.+. +..+. |...|.
T Consensus 116 ~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIr 195 (764)
T KOG1063|consen 116 CKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIR 195 (764)
T ss_pred eeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhh
Confidence 336899999999965552222111111 1112345666663 33 345566677788876654443 34444 899999
Q ss_pred EEEEecCC---CEEEEEeCCCeEEEEECCCCc---------------------eeEEE---------eecCCcceEEEEE
Q 043172 397 SLAFADDG---KQLLSSGGDGQVYHWDLRTRT---------------------CIHRA---------VDEGCINGTALCT 443 (564)
Q Consensus 397 ~l~~spdg---~~l~s~s~dg~V~lwD~~~~~---------------------~~~~~---------~~~~~~~i~~l~~ 443 (564)
+++|...+ -+|+++|.|..|+||.+.-+. +...+ ...|...|.++.|
T Consensus 196 sl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W 275 (764)
T KOG1063|consen 196 SLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWW 275 (764)
T ss_pred hhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEE
Confidence 99998744 388899999999999875332 11111 1245567999999
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCcccCCccee---eEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceec
Q 043172 444 SPDGTFFAAGSDSGIVNVYNRQEFLGGKRKP---IKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFS 520 (564)
Q Consensus 444 sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~---~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~ 520 (564)
+|.+..|+++|.|.++.||...... +-... +..+.+.........|+|++..+++-+. -|..++|.........
T Consensus 276 ~p~~~~LLSASaDksmiiW~pd~~t-GiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~--~Gg~hlWkt~d~~~w~ 352 (764)
T KOG1063|consen 276 HPEGLDLLSASADKSMIIWKPDENT-GIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGR--TGGFHLWKTKDKTFWT 352 (764)
T ss_pred ccchhhheecccCcceEEEecCCcc-ceEEEEEEeecccccccceeeEEEcCCCCEEEEecc--cCcEEEEeccCcccee
Confidence 9999999999999999999877531 11112 2223344556889999999998888887 8999999955544455
Q ss_pred cCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEc
Q 043172 521 NWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKL 558 (564)
Q Consensus 521 ~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l 558 (564)
..+...+|...|+.++|+|.|.||.+.+.|.+-|||--
T Consensus 353 ~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~ 390 (764)
T KOG1063|consen 353 QEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFAR 390 (764)
T ss_pred eccccccccccceeeeecCCCCEEEEeccccceeeecc
Confidence 55677889999999999999999999999999998753
No 155
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.85 E-value=2.1e-19 Score=169.58 Aligned_cols=292 Identities=16% Similarity=0.221 Sum_probs=212.4
Q ss_pred CCCCCCCeeEEEEcC-----CCCEEEEEeCCCcEEEEEecCCCC-ceeEEEE--eCCcCeEEEEEeeC----CCEEEEEe
Q 043172 258 DESSTGPINSVQFHR-----NAQLLLVAGLDRRLRFFQIDGKRN-TKIQSIF--LEDCPVRKASFLPD----GSQAIIAG 325 (564)
Q Consensus 258 ~~~h~~~V~~l~fsp-----dg~~l~s~s~dg~I~lwd~~~~~~-~~~~~~~--~~~~~I~~l~fspd----g~~l~s~~ 325 (564)
...|+.+|..++|++ ..+.++++| ...+.+|...+... ..+++.. .+....+.++|+-+ ..+++++|
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G 112 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG 112 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence 456899999999996 234666666 45688998865432 2233322 25566788889853 34788889
Q ss_pred CCCeEEEEECCCCceeeeccccccCCcceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCcEEEEee----ecCcEEEEEE
Q 043172 326 RRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPD-SSVIAFVGNEGYILLVSSKTKELIGTLK----MNGTVRSLAF 400 (564)
Q Consensus 326 ~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spd-g~~la~~~~dg~I~lwd~~t~~~~~~~~----~~~~V~~l~~ 400 (564)
..|.|+|.|+.++++.. .+.+|.. .|+.+.+.|. .+++++++.|..|++|++++..++..+. |.+.|.++.|
T Consensus 113 ~~GvIrVid~~~~~~~~--~~~ghG~-sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~ 189 (385)
T KOG1034|consen 113 YLGVIRVIDVVSGQCSK--NYRGHGG-SINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDF 189 (385)
T ss_pred ceeEEEEEecchhhhcc--ceeccCc-cchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEE
Confidence 99999999999998743 4666665 7999999996 4788999999999999999999999887 8899999999
Q ss_pred ecCCCEEEEEeCCCeEEEEECCCCceeE------EEeec---------------------CCcceEEEEECCCCCEEEEE
Q 043172 401 ADDGKQLLSSGGDGQVYHWDLRTRTCIH------RAVDE---------------------GCINGTALCTSPDGTFFAAG 453 (564)
Q Consensus 401 spdg~~l~s~s~dg~V~lwD~~~~~~~~------~~~~~---------------------~~~~i~~l~~sp~g~~lasg 453 (564)
+++|.+|+++|.|.+|.+|++...+... .+... |...+-|+.| -|.++++-
T Consensus 190 ~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw--~gd~ilSk 267 (385)
T KOG1034|consen 190 SLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW--FGDFILSK 267 (385)
T ss_pred cCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH--Hhhheeec
Confidence 9999999999999999999998432211 11110 1111222222 15688888
Q ss_pred eCCCcEEEEeCCccc---------CCcceeeEEccccccceeEEEE--cCCCcEEEEEecCCCCeEEEEEcCCCceeccC
Q 043172 454 SDSGIVNVYNRQEFL---------GGKRKPIKTIENLTTKVDFMKF--NNDAQILAICSTMKKNSLKLIHIPSYNVFSNW 522 (564)
Q Consensus 454 s~dg~V~iwd~~~~~---------~~~~~~~~~~~~~~~~I~~l~f--spdg~~La~~s~~~d~~I~lwdl~s~~~~~~~ 522 (564)
|.++.|..|...... ......+..+.-....|+-+.| .|-+++||.|.. .|.|.+|++.......+
T Consensus 268 scenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq--~g~v~vwdL~~~ep~~~- 344 (385)
T KOG1034|consen 268 SCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQ--SGKVYVWDLDNNEPPKC- 344 (385)
T ss_pred ccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccC--CCcEEEEECCCCCCccC-
Confidence 888999999873211 1112334444445556666655 566889999988 89999999988766422
Q ss_pred CCC--CCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEc
Q 043172 523 PPA--NRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKL 558 (564)
Q Consensus 523 ~~~--~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l 558 (564)
++. ......|...+||.+|.+|+..++||+|.-||.
T Consensus 345 ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 345 TTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred ceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 222 222356899999999999999999999999885
No 156
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.85 E-value=1.4e-19 Score=170.31 Aligned_cols=249 Identities=17% Similarity=0.191 Sum_probs=185.5
Q ss_pred CeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceee----------eccccccCCcceEEEEEc-------CCCCEEEEEe
Q 043172 308 PVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADK----------IGPLVGREEKSLEFFEVS-------PDSSVIAFVG 370 (564)
Q Consensus 308 ~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~----------~~~~~~~~~~~v~~~~~s-------pdg~~la~~~ 370 (564)
-...+.|+|||..|++.+.+..+++|++...-... ...+.-.....|...+|- |+.+++|+.+
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence 34578899999999999999999999975321100 011111122346666664 6788999999
Q ss_pred CCCeEEEEECCCCcEEEEee---ecC---cEEEEEEecCCCEEEEEeCCCeEEEEEC-CCCceeEE---Eee---cCCcc
Q 043172 371 NEGYILLVSSKTKELIGTLK---MNG---TVRSLAFADDGKQLLSSGGDGQVYHWDL-RTRTCIHR---AVD---EGCIN 437 (564)
Q Consensus 371 ~dg~I~lwd~~t~~~~~~~~---~~~---~V~~l~~spdg~~l~s~s~dg~V~lwD~-~~~~~~~~---~~~---~~~~~ 437 (564)
.+.-|++||.-+|+....++ |.. ...+++|+|||..|++|. ...|++||+ +.|+--.. +.. ....-
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~gi 209 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGI 209 (406)
T ss_pred ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccce
Confidence 99999999999999988876 332 467899999999998764 679999999 44432211 111 11234
Q ss_pred eEEEEECCCCC-EEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCC
Q 043172 438 GTALCTSPDGT-FFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSY 516 (564)
Q Consensus 438 i~~l~~sp~g~-~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~ 516 (564)
+.+++|+|... .+|+|+....+-||.-... .|+..+.+|.+.|+++.|.++|+.|++|+.. +..|-.||++..
T Consensus 210 isc~a~sP~~~~~~a~gsY~q~~giy~~~~~-----~pl~llggh~gGvThL~~~edGn~lfsGaRk-~dkIl~WDiR~~ 283 (406)
T KOG2919|consen 210 ISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR-----RPLQLLGGHGGGVTHLQWCEDGNKLFSGARK-DDKILCWDIRYS 283 (406)
T ss_pred eeeeeccCCCCcceeeecccceeeeEecCCC-----CceeeecccCCCeeeEEeccCcCeecccccC-CCeEEEEeehhc
Confidence 68899999765 8999999999999988776 8999999999999999999999999999974 889999999754
Q ss_pred c-eeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCCCCC
Q 043172 517 N-VFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNHYHH 563 (564)
Q Consensus 517 ~-~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~~~~ 563 (564)
. ++-.+..+.+....-.-+...|.|++|++|+.+|.|++||++.+-+
T Consensus 284 ~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn 331 (406)
T KOG2919|consen 284 RDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGN 331 (406)
T ss_pred cchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCC
Confidence 3 2222222222111122345678999999999999999999998654
No 157
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.85 E-value=2e-19 Score=172.43 Aligned_cols=240 Identities=16% Similarity=0.159 Sum_probs=178.7
Q ss_pred CCCCCeeEEEEcCCC--CEEEEEeCCCcEEEEEecC--------------CCCceeEEEEeCCcCeEEEEEeeC-CCEEE
Q 043172 260 SSTGPINSVQFHRNA--QLLLVAGLDRRLRFFQIDG--------------KRNTKIQSIFLEDCPVRKASFLPD-GSQAI 322 (564)
Q Consensus 260 ~h~~~V~~l~fspdg--~~l~s~s~dg~I~lwd~~~--------------~~~~~~~~~~~~~~~I~~l~fspd-g~~l~ 322 (564)
+|.+.|+.+.-++-+ .+.++=+..|.|+||++.. ....++.++.+|...=+.++|||- ...|+
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 477777777777754 3555556789999999842 134567788889988899999993 23577
Q ss_pred EEeCCCeEEEEECCCCceee-eccccccCCcceEEEEEcCC-CCEEEEEeCCCeEEEEECCCC---cEEEEeeecCcEEE
Q 043172 323 IAGRRKFFYSLDLVKAKADK-IGPLVGREEKSLEFFEVSPD-SSVIAFVGNEGYILLVSSKTK---ELIGTLKMNGTVRS 397 (564)
Q Consensus 323 s~~~dg~i~iwdl~~~~~~~-~~~~~~~~~~~v~~~~~spd-g~~la~~~~dg~I~lwd~~t~---~~~~~~~~~~~V~~ 397 (564)
+|...+.|++|...++.... ..++.+|. .+|..++|||. ...|++|+-||+|+|||++.+ .++.+-.|++.|+.
T Consensus 229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~-~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNV 307 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHT-KSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNV 307 (440)
T ss_pred cCccccceEeeeeccCceeecCccccccc-cchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceee
Confidence 77777889999999886532 23455654 48999999996 568899999999999999988 44544449999999
Q ss_pred EEEecCCCEEEEEeCCCeEEEEECCC---CceeEEEeecCCcceEEEEECCCC-CEEEEEeCCCcEEEEeCCcccC----
Q 043172 398 LAFADDGKQLLSSGGDGQVYHWDLRT---RTCIHRAVDEGCINGTALCTSPDG-TFFAAGSDSGIVNVYNRQEFLG---- 469 (564)
Q Consensus 398 l~~spdg~~l~s~s~dg~V~lwD~~~---~~~~~~~~~~~~~~i~~l~~sp~g-~~lasgs~dg~V~iwd~~~~~~---- 469 (564)
|.|+..-.+|++|+.||+++|||++. ++++..|..|. .+|++|.|+|.. ..|++++.|.+|.|||+..-..
T Consensus 308 ISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk-~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~ 386 (440)
T KOG0302|consen 308 ISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHK-APITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEI 386 (440)
T ss_pred EEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEecc-CCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhh
Confidence 99999888999999999999999986 55667776554 589999999974 4788889999999999875421
Q ss_pred ----------CcceeeEEccccccceeEEEEcCCCc-EEEEEec
Q 043172 470 ----------GKRKPIKTIENLTTKVDFMKFNNDAQ-ILAICST 502 (564)
Q Consensus 470 ----------~~~~~~~~~~~~~~~I~~l~fspdg~-~La~~s~ 502 (564)
-.++.+.... -...|-.|.|++.-. +|++.+.
T Consensus 387 ~~~a~~~L~dlPpQLLFVHq-GQke~KevhWH~QiPG~lvsTa~ 429 (440)
T KOG0302|consen 387 DQEAAEGLQDLPPQLLFVHQ-GQKEVKEVHWHRQIPGLLVSTAI 429 (440)
T ss_pred ccccccchhcCCceeEEEec-chhHhhhheeccCCCCeEEEecc
Confidence 0122222222 245677788888643 4444443
No 158
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.85 E-value=1e-19 Score=174.41 Aligned_cols=246 Identities=13% Similarity=0.207 Sum_probs=176.2
Q ss_pred eCCcCeEEEEEeeCCCEEEE--EeCCCeEEEEECCCC--------------ceeeeccccccCCcceEEEEEcCC-CCEE
Q 043172 304 LEDCPVRKASFLPDGSQAII--AGRRKFFYSLDLVKA--------------KADKIGPLVGREEKSLEFFEVSPD-SSVI 366 (564)
Q Consensus 304 ~~~~~I~~l~fspdg~~l~s--~~~dg~i~iwdl~~~--------------~~~~~~~~~~~~~~~v~~~~~spd-g~~l 366 (564)
.|.+.+..+.-++-++..++ -+..|.|+||++... ....+.++.+|.. .=..++|||- ...|
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~-EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKG-EGYGLDWSPIKTGRL 227 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCc-cceeeeccccccccc
Confidence 35566666666665444433 357799999997532 1122344455553 4467999993 2346
Q ss_pred EEEeCCCeEEEEECCCCcEEEEee----ecCcEEEEEEecC-CCEEEEEeCCCeEEEEECCCC---ceeEEEeecCCcce
Q 043172 367 AFVGNEGYILLVSSKTKELIGTLK----MNGTVRSLAFADD-GKQLLSSGGDGQVYHWDLRTR---TCIHRAVDEGCING 438 (564)
Q Consensus 367 a~~~~dg~I~lwd~~t~~~~~~~~----~~~~V~~l~~spd-g~~l~s~s~dg~V~lwD~~~~---~~~~~~~~~~~~~i 438 (564)
++|..-+.|++|...++.+...-. |...|-+++|+|. ...|++||.||+|+|||+|.+ .++.+ ..+...|
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~--kAh~sDV 305 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST--KAHNSDV 305 (440)
T ss_pred ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe--eccCCce
Confidence 777777899999999988764322 8889999999995 468899999999999999987 34433 3444588
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCc-EEEEEecCCCCeEEEEEcCCCc
Q 043172 439 TALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQ-ILAICSTMKKNSLKLIHIPSYN 517 (564)
Q Consensus 439 ~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~-~La~~s~~~d~~I~lwdl~s~~ 517 (564)
..|.|+..-.+||+|+.+|++.|||++.. ...+|+.++..|.++|++|.|+|... .|++++. |++|.|||+.--.
T Consensus 306 NVISWnr~~~lLasG~DdGt~~iwDLR~~--~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~--D~QitiWDlsvE~ 381 (440)
T KOG0302|consen 306 NVISWNRREPLLASGGDDGTLSIWDLRQF--KSGQPVATFKYHKAPITSIEWHPHEDSVIAASGE--DNQITIWDLSVEA 381 (440)
T ss_pred eeEEccCCcceeeecCCCceEEEEEhhhc--cCCCcceeEEeccCCeeEEEeccccCceEEeccC--CCcEEEEEeeccC
Confidence 99999988889999999999999999987 44489999999999999999999644 4455555 9999999995321
Q ss_pred e-----------eccCCCC----CCCCCCcEEEEEeCC-CCEEEEEcCCCeEEEEE
Q 043172 518 V-----------FSNWPPA----NRNLQYPRCLDFSPG-GGFMAVGNAAGKVFLYK 557 (564)
Q Consensus 518 ~-----------~~~~~~~----~~~~~~V~~l~fspd-g~~Lasgs~dG~V~lw~ 557 (564)
- +..+|.. ......+..+.|+++ -.+|++.+.|| +.||.
T Consensus 382 D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 382 DEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred ChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 1 1112211 111234677888885 35788888888 45553
No 159
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.84 E-value=1.3e-17 Score=172.70 Aligned_cols=291 Identities=25% Similarity=0.384 Sum_probs=222.9
Q ss_pred CCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCC-cCeEEEEE-eeCCC-EEEEEe-CCCeEEEE
Q 043172 258 DESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLED-CPVRKASF-LPDGS-QAIIAG-RRKFFYSL 333 (564)
Q Consensus 258 ~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~-~~I~~l~f-spdg~-~l~s~~-~dg~i~iw 333 (564)
...|...|.++.|++.+..++.++.++.+.+|+..... ..+..+.... ..+..+.+ ++++. .++..+ .++.+.+|
T Consensus 61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE-KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc-eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 45699999999999999999999999999999987543 2444555433 36777777 78787 444444 48999999
Q ss_pred ECCC-CceeeeccccccCCcceEEEEEcCCCCEEEEEeC-CCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCC-EEEE
Q 043172 334 DLVK-AKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGN-EGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGK-QLLS 409 (564)
Q Consensus 334 dl~~-~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~-dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~-~l~s 409 (564)
++.. ... ...+..|.. .|..++|+|++.++++++. ++.+.+|++.++..+..+. |...|.+++|+|++. .+++
T Consensus 140 ~~~~~~~~--~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 216 (466)
T COG2319 140 DLSTPGKL--IRTLEGHSE-SVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIAS 216 (466)
T ss_pred EecCCCeE--EEEEecCcc-cEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEE
Confidence 9987 333 223455554 6889999999998888885 9999999999988888887 789999999999998 5555
Q ss_pred EeCCCeEEEEECCCCceeE-EEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEE
Q 043172 410 SGGDGQVYHWDLRTRTCIH-RAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFM 488 (564)
Q Consensus 410 ~s~dg~V~lwD~~~~~~~~-~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l 488 (564)
++.|+.|++||...+..+. .+..+.. .. ...|+|++.++++++.++.+++|++.... ..+..+..|...|.++
T Consensus 217 ~~~d~~i~~wd~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~----~~~~~~~~~~~~v~~~ 290 (466)
T COG2319 217 GSSDGTIRLWDLSTGKLLRSTLSGHSD-SV-VSSFSPDGSLLASGSSDGTIRLWDLRSSS----SLLRTLSGHSSSVLSV 290 (466)
T ss_pred ecCCCcEEEEECCCCcEEeeecCCCCc-ce-eEeECCCCCEEEEecCCCcEEEeeecCCC----cEEEEEecCCccEEEE
Confidence 5899999999998777776 3443333 22 22799999899999999999999998751 1244446678999999
Q ss_pred EEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEE-cCCCeEEEEEcCCC
Q 043172 489 KFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVG-NAAGKVFLYKLNHY 561 (564)
Q Consensus 489 ~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasg-s~dG~V~lw~l~~~ 561 (564)
.|+|++..+++++. ++.+++|++.+........ ...|...+..+.|.+++..++.+ ..++.+.+|++...
T Consensus 291 ~~~~~~~~~~~~~~--d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 361 (466)
T COG2319 291 AFSPDGKLLASGSS--DGTVRLWDLETGKLLSSLT-LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTG 361 (466)
T ss_pred EECCCCCEEEEeeC--CCcEEEEEcCCCceEEEee-ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCC
Confidence 99999999988776 6789999988776655443 22344568899994343556655 67899999998754
No 160
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=3e-18 Score=180.60 Aligned_cols=293 Identities=19% Similarity=0.197 Sum_probs=216.6
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecC--CCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCC
Q 043172 260 SSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDG--KRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVK 337 (564)
Q Consensus 260 ~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~--~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~ 337 (564)
.|.-.++|.++||++.++|+|..||.|.+|.--+ ......+.++-|...|.+++|+++|.+|++||+.+.+.+|.+.+
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T 282 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET 282 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence 4777899999999999999999999999997544 23334567788999999999999999999999999999999999
Q ss_pred CceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee------------ecCcEEEEEEecCCC
Q 043172 338 AKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK------------MNGTVRSLAFADDGK 405 (564)
Q Consensus 338 ~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~------------~~~~V~~l~~spdg~ 405 (564)
++... ...-..+|..+.+|||+.+.++...|..|.+..+.+.....++. ..+-.+.++++|..+
T Consensus 283 ~~kqf----LPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~ 358 (792)
T KOG1963|consen 283 GKKQF----LPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTN 358 (792)
T ss_pred CCccc----ccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCC
Confidence 98432 22333489999999999999999999999999887665544443 134467889999777
Q ss_pred EEEEEeCCCeEEEEECCCCceeEEEee----------cCCcceEEEEECCCCCEEEEEe--------CCC--cEEEEeCC
Q 043172 406 QLLSSGGDGQVYHWDLRTRTCIHRAVD----------EGCINGTALCTSPDGTFFAAGS--------DSG--IVNVYNRQ 465 (564)
Q Consensus 406 ~l~s~s~dg~V~lwD~~~~~~~~~~~~----------~~~~~i~~l~~sp~g~~lasgs--------~dg--~V~iwd~~ 465 (564)
.++-.+..|.|.+||+-+...+..+.. .....++.++.+..|.|++|+- .+| .+++|-..
T Consensus 359 ~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n 438 (792)
T KOG1963|consen 359 SLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYN 438 (792)
T ss_pred ceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEc
Confidence 788888999999999998777655542 1234567888888899999873 233 57788766
Q ss_pred cccCCcceee-EEccccccceeEEEEcCC-Cc-EEEEEecCCCCeEEEEEcCCCceec----cCC---CCCCCCCCcEEE
Q 043172 466 EFLGGKRKPI-KTIENLTTKVDFMKFNND-AQ-ILAICSTMKKNSLKLIHIPSYNVFS----NWP---PANRNLQYPRCL 535 (564)
Q Consensus 466 ~~~~~~~~~~-~~~~~~~~~I~~l~fspd-g~-~La~~s~~~d~~I~lwdl~s~~~~~----~~~---~~~~~~~~V~~l 535 (564)
.... ..... .....|...+...+|.+. .. ..++++. +|.++||-+.....+. .|. ....|..+++++
T Consensus 439 ~~~k-t~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~--dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~ 515 (792)
T KOG1963|consen 439 PNSK-TFILNTKINNPHGNAFVATIFLNPTRSVRCVTASV--DGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITAL 515 (792)
T ss_pred CCcc-eeEEEEEEecCCCceeEEEEEecCcccceeEEecc--CCeEEEEEEecccccCcCccceEEeeeeccccCcccch
Confidence 5411 11222 222456665555555443 22 6777777 9999999984322211 111 112355789999
Q ss_pred EEeCCCCEEEEEcCCCeEEEEEcCC
Q 043172 536 DFSPGGGFMAVGNAAGKVFLYKLNH 560 (564)
Q Consensus 536 ~fspdg~~Lasgs~dG~V~lw~l~~ 560 (564)
+||.||..|+++ .+++|.+||..+
T Consensus 516 ~fs~dGslla~s-~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 516 CFSQDGSLLAVS-FDDTITIWDYDT 539 (792)
T ss_pred hhcCCCcEEEEe-cCCEEEEecCCC
Confidence 999999877655 688999999876
No 161
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.83 E-value=2.8e-19 Score=175.29 Aligned_cols=258 Identities=17% Similarity=0.174 Sum_probs=190.8
Q ss_pred eeEEEEeCCcCeEEEEEeeCC--CEEEEEeCCCeEEEEECCCCce--eeeccccccCCcceEEEEEcCC-CCEEEEEeCC
Q 043172 298 KIQSIFLEDCPVRKASFLPDG--SQAIIAGRRKFFYSLDLVKAKA--DKIGPLVGREEKSLEFFEVSPD-SSVIAFVGNE 372 (564)
Q Consensus 298 ~~~~~~~~~~~I~~l~fspdg--~~l~s~~~dg~i~iwdl~~~~~--~~~~~~~~~~~~~v~~~~~spd-g~~la~~~~d 372 (564)
....+..+..+|++++|+|.. +.+++|...|.|-+||+.+... ..+.-+..|. .+|.++.|+|. ...+++.+.|
T Consensus 178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs-~~Vs~l~F~P~n~s~i~ssSyD 256 (498)
T KOG4328|consen 178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHS-GPVSGLKFSPANTSQIYSSSYD 256 (498)
T ss_pred ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCC-ccccceEecCCChhheeeeccC
Confidence 445566788999999999954 4677778899999999963322 1222234444 48999999995 5688899999
Q ss_pred CeEEEEECCCCcEEEEee---ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCce-eEEEeecCCcceEEEEECCCCC
Q 043172 373 GYILLVSSKTKELIGTLK---MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTC-IHRAVDEGCINGTALCTSPDGT 448 (564)
Q Consensus 373 g~I~lwd~~t~~~~~~~~---~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~-~~~~~~~~~~~i~~l~~sp~g~ 448 (564)
|+|++-|+.+...-..+. ....+.++.|+.....++.+..-|.+.+||++++.. ...+..+. ..|++++++|...
T Consensus 257 GtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~-kKI~sv~~NP~~p 335 (498)
T KOG4328|consen 257 GTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHK-KKITSVALNPVCP 335 (498)
T ss_pred ceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhh-cccceeecCCCCc
Confidence 999999998876544443 234677888888888888888878999999998765 33333333 3899999999765
Q ss_pred -EEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcC----CCceeccCC
Q 043172 449 -FFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIP----SYNVFSNWP 523 (564)
Q Consensus 449 -~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~----s~~~~~~~~ 523 (564)
+||++|.|++++|||++.... ...|+-....|...|.++.|||.+-.|++.+. |+.|||||.. .......++
T Consensus 336 ~~laT~s~D~T~kIWD~R~l~~-K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~--D~~IRv~dss~~sa~~~p~~~I~ 412 (498)
T KOG4328|consen 336 WFLATASLDQTAKIWDLRQLRG-KASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQ--DNEIRVFDSSCISAKDEPLGTIP 412 (498)
T ss_pred hheeecccCcceeeeehhhhcC-CCCcceecccccceeeeeEEcCCCCceEeecc--CCceEEeecccccccCCccceee
Confidence 789999999999999997622 12244555669999999999999888999888 9999999984 222222222
Q ss_pred CCCC---CCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCCC
Q 043172 524 PANR---NLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNHY 561 (564)
Q Consensus 524 ~~~~---~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~~ 561 (564)
-... +.. +.-..|.|+..++++|..-..|-||+-+..
T Consensus 413 Hn~~t~RwlT-~fKA~W~P~~~li~vg~~~r~IDv~~~~~~ 452 (498)
T KOG4328|consen 413 HNNRTGRWLT-PFKAAWDPDYNLIVVGRYPRPIDVFDGNGG 452 (498)
T ss_pred ccCccccccc-chhheeCCCccEEEEeccCcceeEEcCCCC
Confidence 1111 222 334579999999999999888998886544
No 162
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=4.8e-19 Score=173.19 Aligned_cols=247 Identities=15% Similarity=0.165 Sum_probs=184.7
Q ss_pred CeeEEEEcC-------CCCEEEEEeCCCcEEEEEecCCCC--c-----------------eeEEEEeCCcCeEEEEEeeC
Q 043172 264 PINSVQFHR-------NAQLLLVAGLDRRLRFFQIDGKRN--T-----------------KIQSIFLEDCPVRKASFLPD 317 (564)
Q Consensus 264 ~V~~l~fsp-------dg~~l~s~s~dg~I~lwd~~~~~~--~-----------------~~~~~~~~~~~I~~l~fspd 317 (564)
.-.|++|.- -|+++|.|..+..|.|||++-... + .-....+|...|.+++|+..
T Consensus 175 fPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~ 254 (463)
T KOG0270|consen 175 FPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN 254 (463)
T ss_pred cchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc
Confidence 346677754 267999999999999999863210 0 11122357778888888864
Q ss_pred -CCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCC-CCEEEEEeCCCeEEEEECCC-CcEEEEeeecCc
Q 043172 318 -GSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPD-SSVIAFVGNEGYILLVSSKT-KELIGTLKMNGT 394 (564)
Q Consensus 318 -g~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spd-g~~la~~~~dg~I~lwd~~t-~~~~~~~~~~~~ 394 (564)
.+.|++||.|.+|.+||+.++++..+. .|+.+.|.++.|+|. ..+|++|+.|++|.+.|.+. ...-...+..+.
T Consensus 255 ~~nVLaSgsaD~TV~lWD~~~g~p~~s~---~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~ 331 (463)
T KOG0270|consen 255 FRNVLASGSADKTVKLWDVDTGKPKSSI---THHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGE 331 (463)
T ss_pred cceeEEecCCCceEEEEEcCCCCcceeh---hhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccc
Confidence 467888999999999999999986543 255568999999995 67899999999999999984 333344557889
Q ss_pred EEEEEEecCC-CEEEEEeCCCeEEEEECCCC-ceeEEEeecCCcceEEEEECCCC-CEEEEEeCCCcEEEEeCCcccCCc
Q 043172 395 VRSLAFADDG-KQLLSSGGDGQVYHWDLRTR-TCIHRAVDEGCINGTALCTSPDG-TFFAAGSDSGIVNVYNRQEFLGGK 471 (564)
Q Consensus 395 V~~l~~spdg-~~l~s~s~dg~V~lwD~~~~-~~~~~~~~~~~~~i~~l~~sp~g-~~lasgs~dg~V~iwd~~~~~~~~ 471 (564)
|-.++|.|.. ..+++++.||+|+-+|+|.. +++.++..|.. .|.+|++++.- .++++++.++.|++|++... .
T Consensus 332 VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~-~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~---~ 407 (463)
T KOG0270|consen 332 VEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDD-EISGLSVNIQTPGLLSTASTDKVVKLWKFDVD---S 407 (463)
T ss_pred eEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccC-CcceEEecCCCCcceeeccccceEEEEeecCC---C
Confidence 9999999954 56778888999999999985 77777776554 89999998764 47899999999999999864 2
Q ss_pred ceeeEEccccccceeEEEEcCCCcEE-EEEecCCCCeEEEEEcCCCcee
Q 043172 472 RKPIKTIENLTTKVDFMKFNNDAQIL-AICSTMKKNSLKLIHIPSYNVF 519 (564)
Q Consensus 472 ~~~~~~~~~~~~~I~~l~fspdg~~L-a~~s~~~d~~I~lwdl~s~~~~ 519 (564)
++.++.-.-.-+...|.++.|+-.++ ++|+. .+.++|||+.++..+
T Consensus 408 ~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~--k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 408 PKSVKEHSFKLGRLHCFALDPDVAFTLAFGGE--KAVLRVWDIFTNSPV 454 (463)
T ss_pred CcccccccccccceeecccCCCcceEEEecCc--cceEEEeecccChhH
Confidence 33333322223446777888876554 44444 568999999876554
No 163
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.83 E-value=1.1e-18 Score=162.03 Aligned_cols=269 Identities=16% Similarity=0.231 Sum_probs=199.3
Q ss_pred CCcEEEEEecCCCCceeE-EEEeCCcCeEEEEEeeCCCEEEE-EeCC-------CeEEEEECCCCce-------eeeccc
Q 043172 283 DRRLRFFQIDGKRNTKIQ-SIFLEDCPVRKASFLPDGSQAII-AGRR-------KFFYSLDLVKAKA-------DKIGPL 346 (564)
Q Consensus 283 dg~I~lwd~~~~~~~~~~-~~~~~~~~I~~l~fspdg~~l~s-~~~d-------g~i~iwdl~~~~~-------~~~~~~ 346 (564)
|+.|.+.+++........ .+..+.+.|..++-+|-...|++ +-.+ ..+.||.+..... ..+..+
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L 118 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL 118 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence 678888887755443332 34456788999999995555444 3221 2467898765321 112223
Q ss_pred cccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE-EEEee------ecCcEEEEEEec--CCCEEEEEeCCCeEE
Q 043172 347 VGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKEL-IGTLK------MNGTVRSLAFAD--DGKQLLSSGGDGQVY 417 (564)
Q Consensus 347 ~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~-~~~~~------~~~~V~~l~~sp--dg~~l~s~s~dg~V~ 417 (564)
....-+.|.|+.|.|++..+++.. +..|.+|++..+.. +..+. +....++-+|+| +|+.+++. .+++++
T Consensus 119 dteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~ 196 (370)
T KOG1007|consen 119 DTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQ 196 (370)
T ss_pred CHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEE
Confidence 322223699999999999998875 78899999987655 34333 455678889999 77877766 478999
Q ss_pred EEECCCCceeEEEeecCCcceEEEEECCCCC-EEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCC-Cc
Q 043172 418 HWDLRTRTCIHRAVDEGCINGTALCTSPDGT-FFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNND-AQ 495 (564)
Q Consensus 418 lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~-~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspd-g~ 495 (564)
.||+++.++...+...|...+..+.|+|+-+ +||+|+.||.|+|||.+.. ..|+..+.+|..+|+++.|+|- .+
T Consensus 197 ~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t----k~pv~el~~HsHWvW~VRfn~~hdq 272 (370)
T KOG1007|consen 197 FWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT----KFPVQELPGHSHWVWAVRFNPEHDQ 272 (370)
T ss_pred EEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC----CccccccCCCceEEEEEEecCccce
Confidence 9999999999889888888899999999866 7889999999999999865 4799999999999999999995 57
Q ss_pred EEEEEecCCCCeEEEEEcCCCce------------------------ec--cCCCCCCCCCCcEEEEEeCCCC-EEEEEc
Q 043172 496 ILAICSTMKKNSLKLIHIPSYNV------------------------FS--NWPPANRNLQYPRCLDFSPGGG-FMAVGN 548 (564)
Q Consensus 496 ~La~~s~~~d~~I~lwdl~s~~~------------------------~~--~~~~~~~~~~~V~~l~fspdg~-~Lasgs 548 (564)
+|++++. |..|.||...+-.. +. .+.+...|...|.+++||.-.. .+|+-+
T Consensus 273 LiLs~~S--Ds~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLS 350 (370)
T KOG1007|consen 273 LILSGGS--DSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLS 350 (370)
T ss_pred EEEecCC--CceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEec
Confidence 7777777 89999997654210 00 1123345678899999998555 567889
Q ss_pred CCCeEEEEEcC
Q 043172 549 AAGKVFLYKLN 559 (564)
Q Consensus 549 ~dG~V~lw~l~ 559 (564)
.||+|.|=++.
T Consensus 351 YDGRviIs~V~ 361 (370)
T KOG1007|consen 351 YDGRVIISSVP 361 (370)
T ss_pred cCceEEeecCC
Confidence 99999987664
No 164
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=4.7e-19 Score=170.17 Aligned_cols=293 Identities=14% Similarity=0.144 Sum_probs=215.2
Q ss_pred CCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecC----CCCceeEEE-EeCCcCeEEEEEeeCCCEEEEEeCCCeEEE
Q 043172 258 DESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDG----KRNTKIQSI-FLEDCPVRKASFLPDGSQAIIAGRRKFFYS 332 (564)
Q Consensus 258 ~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~----~~~~~~~~~-~~~~~~I~~l~fspdg~~l~s~~~dg~i~i 332 (564)
..+|.+.|++|.|+.++++|++||.|..++||+++. ...+++... +.|...|.|++|....++|++|+.+++|..
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~ 131 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIK 131 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEe
Confidence 457999999999999999999999999999999863 222344433 235688999999999999999999999999
Q ss_pred EECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-EE---EEeeecCcEEEEEEecC-CCEE
Q 043172 333 LDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKE-LI---GTLKMNGTVRSLAFADD-GKQL 407 (564)
Q Consensus 333 wdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~-~~---~~~~~~~~V~~l~~spd-g~~l 407 (564)
-|+.+.+...+..-.... ..|..+..+|..+.|++.+.++.|.+||.+..+ .+ ..........++.|+|- ..+|
T Consensus 132 HDiEt~qsi~V~~~~~~~-~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li 210 (609)
T KOG4227|consen 132 HDIETKQSIYVANENNNR-GDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALI 210 (609)
T ss_pred eecccceeeeeecccCcc-cceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeE
Confidence 999998876543222222 479999999999999999999999999998665 22 22224567889999994 5678
Q ss_pred EEEeCCCeEEEEECCCCce-eEEEeecC-----CcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEcc-c
Q 043172 408 LSSGGDGQVYHWDLRTRTC-IHRAVDEG-----CINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIE-N 480 (564)
Q Consensus 408 ~s~s~dg~V~lwD~~~~~~-~~~~~~~~-----~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~-~ 480 (564)
++.+..+-+-+||++.... +.+..... .....++.|+|+|..|++--....-.+||+.+. ..++..+. +
T Consensus 211 ~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~----R~~V~k~D~N 286 (609)
T KOG4227|consen 211 LVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQ----RCFVLKSDHN 286 (609)
T ss_pred EeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecc----cceeEeccCC
Confidence 8888889999999986432 21111111 112356789999998877655555567787652 13344443 1
Q ss_pred c-----ccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCce--------------------eccCCCCCCCCCCcEEE
Q 043172 481 L-----TTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNV--------------------FSNWPPANRNLQYPRCL 535 (564)
Q Consensus 481 ~-----~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~--------------------~~~~~~~~~~~~~V~~l 535 (564)
. ...|.+++|..|-. +++||. +-.|++|.++...- -..+....+|...++.+
T Consensus 287 ~~GY~N~~T~KS~~F~~D~~-v~tGSD--~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQV 363 (609)
T KOG4227|consen 287 PNGYCNIKTIKSMTFIDDYT-VATGSD--HWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQV 363 (609)
T ss_pred CCcceeeeeeeeeeeeccee-eeccCc--ccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccce
Confidence 1 13466778876654 788887 78899999974211 11233446788889999
Q ss_pred EEeCCCCEEEEEcCCCeEEEEEc
Q 043172 536 DFSPGGGFMAVGNAAGKVFLYKL 558 (564)
Q Consensus 536 ~fspdg~~Lasgs~dG~V~lw~l 558 (564)
.|+|...+|++.+-...++||.-
T Consensus 364 RF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 364 RFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred eecCCcceEeccchhhheecccc
Confidence 99999999999998999999964
No 165
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.83 E-value=4.8e-19 Score=179.89 Aligned_cols=251 Identities=16% Similarity=0.167 Sum_probs=186.2
Q ss_pred CCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeC-CCEEEEEeCCCeEEEEECC
Q 043172 258 DESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPD-GSQAIIAGRRKFFYSLDLV 336 (564)
Q Consensus 258 ~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspd-g~~l~s~~~dg~i~iwdl~ 336 (564)
...|.+.|..+.|-|....|++++.|.++++||+......-...+.+|.+.|.++||.|. ...+++|++||.|.|||+.
T Consensus 96 ~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R 175 (720)
T KOG0321|consen 96 PLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCR 175 (720)
T ss_pred cccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEe
Confidence 346999999999999777899999999999999986654444458899999999999995 4567788999999999986
Q ss_pred CCceeee-------------------------ccccccCCcceEE---EEEcCCCCEEEEEeC-CCeEEEEECCCCcEEE
Q 043172 337 KAKADKI-------------------------GPLVGREEKSLEF---FEVSPDSSVIAFVGN-EGYILLVSSKTKELIG 387 (564)
Q Consensus 337 ~~~~~~~-------------------------~~~~~~~~~~v~~---~~~spdg~~la~~~~-dg~I~lwd~~t~~~~~ 387 (564)
-...... .....+ ...|.+ +.+..|...||++|. |+.|+|||++......
T Consensus 176 ~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~-s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~ 254 (720)
T KOG0321|consen 176 CNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAA-SNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAY 254 (720)
T ss_pred ccchhhHHHHhhhhhccccCCCCCCchhhccccccccc-cCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccccc
Confidence 4331100 000011 123444 556678889999887 9999999998765433
Q ss_pred Eee---------e---cCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCce--eEEEeecC--CcceEEEEECCCCCEEE
Q 043172 388 TLK---------M---NGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTC--IHRAVDEG--CINGTALCTSPDGTFFA 451 (564)
Q Consensus 388 ~~~---------~---~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~--~~~~~~~~--~~~i~~l~~sp~g~~la 451 (564)
... + ...+.++.....|.+|++...|+.|++|++.+-.. +..+.+.. ... ..-..+|++.+++
T Consensus 255 r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~-vks~lSpd~~~l~ 333 (720)
T KOG0321|consen 255 RQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFY-VKSELSPDDCSLL 333 (720)
T ss_pred ccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceee-eeeecCCCCceEe
Confidence 221 2 23577888888889888888899999999986432 22232221 111 2334689999999
Q ss_pred EEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCC-cEEEEEecCCCCeEEEEEcCCC
Q 043172 452 AGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDA-QILAICSTMKKNSLKLIHIPSY 516 (564)
Q Consensus 452 sgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg-~~La~~s~~~d~~I~lwdl~s~ 516 (564)
+|+.+..++||.+... ..+...+.+|.-.|++++|.|.. .-+++++. |..++||++..+
T Consensus 334 SgSsd~~ayiw~vs~~----e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSd--D~~~kiW~l~~~ 393 (720)
T KOG0321|consen 334 SGSSDEQAYIWVVSSP----EAPPALLLGHTREVTTVRWLPSATTPVATCSD--DFRVKIWRLSNG 393 (720)
T ss_pred ccCCCcceeeeeecCc----cCChhhhhCcceEEEEEeeccccCCCceeecc--CcceEEEeccCc
Confidence 9999999999999875 36677788999999999998742 33556677 999999999543
No 166
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=4.8e-19 Score=167.99 Aligned_cols=274 Identities=13% Similarity=0.110 Sum_probs=199.3
Q ss_pred CEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEee--CCCEEEEEeCCCeEEEEECCCCceeeeccccccCCc
Q 043172 275 QLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLP--DGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEK 352 (564)
Q Consensus 275 ~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fsp--dg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~ 352 (564)
..+|++-..|.|+|||..+ ...+..+.++...+..+.|.. ....+.+|+.||+|++||+++...........+...
T Consensus 41 ~~vav~lSngsv~lyd~~t--g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~ 118 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGT--GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGT 118 (376)
T ss_pred eeEEEEecCCeEEEEeccc--hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCC
Confidence 5688888899999999874 567888899999999999987 567889999999999999998776555555566556
Q ss_pred ceEEEEEcCCCCEEEEEeC----CCeEEEEECCCCcE-EEEee--ecCcEEEEEEec-CCCEEEEEeCCCeEEEEECCCC
Q 043172 353 SLEFFEVSPDSSVIAFVGN----EGYILLVSSKTKEL-IGTLK--MNGTVRSLAFAD-DGKQLLSSGGDGQVYHWDLRTR 424 (564)
Q Consensus 353 ~v~~~~~spdg~~la~~~~----dg~I~lwd~~t~~~-~~~~~--~~~~V~~l~~sp-dg~~l~s~s~dg~V~lwD~~~~ 424 (564)
+..+++....++.+++|.. +-.|.+||++..+. +..+. |...|+++.|+| +.+.|++||.||.|.+||+...
T Consensus 119 ~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 119 PFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred cceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 7888888888888888753 57899999998766 66666 999999999999 5689999999999999999764
Q ss_pred c----eeEEEeecCCcceEEEEECCCC-CEEEEEeCCCcEEEEeCCcccCCcceeeEEcccc------------ccceeE
Q 043172 425 T----CIHRAVDEGCINGTALCTSPDG-TFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENL------------TTKVDF 487 (564)
Q Consensus 425 ~----~~~~~~~~~~~~i~~l~~sp~g-~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~------------~~~I~~ 487 (564)
. .+..+. +...|.++.|..++ +.|.+-+..++..+|++..+ .+...+... ...+..
T Consensus 199 ~EeDaL~~viN--~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~-----~~~~~~~~~~~~~~d~r~~~~~dY~I~ 271 (376)
T KOG1188|consen 199 NEEDALLHVIN--HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDG-----SEETWLENPDVSADDLRKEDNCDYVIN 271 (376)
T ss_pred cchhhHHHhhc--ccceeeeeeeecCCcceEEEEEccCceeEEEccCC-----ChhhcccCccchhhhHHhhhhhhheee
Confidence 2 122222 23357889998877 35888889999999999886 232222211 011111
Q ss_pred EEEcCCCcEEEEEecCCCCeEEEE---EcCCCceeccCCCCC-CCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEc
Q 043172 488 MKFNNDAQILAICSTMKKNSLKLI---HIPSYNVFSNWPPAN-RNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKL 558 (564)
Q Consensus 488 l~fspdg~~La~~s~~~d~~I~lw---dl~s~~~~~~~~~~~-~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l 558 (564)
.-...++...+++... -|...++ +..++.......... +|...|.++.|...+.++.+|+.||.+.+|..
T Consensus 272 ~~~~~~~~~~~l~g~~-~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 272 EHSPGDKDTCALAGTD-SNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred cccCCCcceEEEeccc-cCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 2122345555555442 2333333 334444333322222 35567899999999999999999999999985
No 167
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.82 E-value=1.6e-16 Score=164.62 Aligned_cols=302 Identities=25% Similarity=0.362 Sum_probs=226.7
Q ss_pred CCCeeeeee-eecccCCCCCCCCeeEEEEcCCCCEEEEEeC-CCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCC-
Q 043172 243 SPGLLEYSR-LIDANADESSTGPINSVQFHRNAQLLLVAGL-DRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGS- 319 (564)
Q Consensus 243 ~~~~~d~~r-l~~~~~~~~h~~~V~~l~fspdg~~l~s~s~-dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~- 319 (564)
....|+... .........|...|.+++|+|++.++++++. ++.+++|++.. ...+..+..|...|.+++|+|++.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~ 212 (466)
T COG2319 135 TVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT--GKPLSTLAGHTDPVSSLAFSPDGGL 212 (466)
T ss_pred cEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCC--CceEEeeccCCCceEEEEEcCCcce
Confidence 344555544 4444456779999999999999999988886 99999999874 456777777999999999999998
Q ss_pred EEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE-EEEe-eecCcEEE
Q 043172 320 QAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKEL-IGTL-KMNGTVRS 397 (564)
Q Consensus 320 ~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~-~~~~-~~~~~V~~ 397 (564)
.+++++.++.+.+||...+..... .+.+|.. .. ...|+|++.++++++.++.+++|++..... +..+ .|...|.+
T Consensus 213 ~~~~~~~d~~i~~wd~~~~~~~~~-~~~~~~~-~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~ 289 (466)
T COG2319 213 LIASGSSDGTIRLWDLSTGKLLRS-TLSGHSD-SV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLS 289 (466)
T ss_pred EEEEecCCCcEEEEECCCCcEEee-ecCCCCc-ce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEE
Confidence 444448999999999886665332 3555554 22 228999998999999999999999987664 4443 37789999
Q ss_pred EEEecCCCEEEEEeCCCeEEEEECCCCceeEEEe-ecCCcceEEEEECCCCCEEEEE-eCCCcEEEEeCCcccCCcceee
Q 043172 398 LAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAV-DEGCINGTALCTSPDGTFFAAG-SDSGIVNVYNRQEFLGGKRKPI 475 (564)
Q Consensus 398 l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~-~~~~~~i~~l~~sp~g~~lasg-s~dg~V~iwd~~~~~~~~~~~~ 475 (564)
+.|+|++..+++++.++.+.+|++.+........ ..+...+..+.+.+++..++.+ ..++.+.+|++... ...
T Consensus 290 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-----~~~ 364 (466)
T COG2319 290 VAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTG-----KPL 364 (466)
T ss_pred EEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCC-----cee
Confidence 9999988888888889899999998877666554 2232257788884333455555 67899999999875 322
Q ss_pred EEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEE
Q 043172 476 KTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFL 555 (564)
Q Consensus 476 ~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~l 555 (564)
...... ..+..+.+++ . ....+....++.+.+|+.............. ..+....+++++.++++++.++.+.+
T Consensus 365 ~~~~~~-~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (466)
T COG2319 365 KTLEGH-SNVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHT---SRVTSLDFSPDGKSLASGSSDNTIRL 438 (466)
T ss_pred EEecCC-ceEEEEEECC-C-CCEEEEecCCCceEEEecccCeeeeeccCCC---CcEEEEEECCCCcEEEEecCCCcEEE
Confidence 333222 2288999999 6 4444422238999999999877765444332 67889999999999999999999999
Q ss_pred EEcCC
Q 043172 556 YKLNH 560 (564)
Q Consensus 556 w~l~~ 560 (564)
|++..
T Consensus 439 ~~~~~ 443 (466)
T COG2319 439 WDLKT 443 (466)
T ss_pred EeccC
Confidence 99864
No 168
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.81 E-value=1.4e-18 Score=159.49 Aligned_cols=290 Identities=16% Similarity=0.165 Sum_probs=201.1
Q ss_pred CCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEE-eCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECC
Q 043172 258 DESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIF-LEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLV 336 (564)
Q Consensus 258 ~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~-~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~ 336 (564)
.++|.+.|+|+.|-.++. |++|..-|.|++|.+.+.. ....+. .+..+|+.+...|+ ..+.+-++|..+.+|++.
T Consensus 10 LRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r--~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia 85 (323)
T KOG0322|consen 10 LRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTER--DLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIA 85 (323)
T ss_pred eccccchheehhhccchh-hhcccccceEEEEEeecCc--cchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEcc
Confidence 347999999999998876 8899999999999998654 333344 46678888888887 578888999999999999
Q ss_pred CCceeeeccccccCCcceEEEEEcCCCC----EEEEEeCCC-eEEEEECCCCcEEEEee-----ecCcEEEEEEec-CCC
Q 043172 337 KAKADKIGPLVGREEKSLEFFEVSPDSS----VIAFVGNEG-YILLVSSKTKELIGTLK-----MNGTVRSLAFAD-DGK 405 (564)
Q Consensus 337 ~~~~~~~~~~~~~~~~~v~~~~~spdg~----~la~~~~dg-~I~lwd~~t~~~~~~~~-----~~~~V~~l~~sp-dg~ 405 (564)
.+....+..+...+- ....+++++.++ .++.-+... .+++-|......+.... ..+.+.+..|.- .+.
T Consensus 86 ~s~~i~i~Si~~nsl-gFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s 164 (323)
T KOG0322|consen 86 YSAFISIHSIVVNSL-GFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGS 164 (323)
T ss_pred CcceEEEeeeecccc-ccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccc
Confidence 887766655544332 122233344332 222222211 13333333333333222 235677777543 232
Q ss_pred --EEEEEeCCCeEEEEECCCCceeEEEee---------cCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCccee
Q 043172 406 --QLLSSGGDGQVYHWDLRTRTCIHRAVD---------EGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKP 474 (564)
Q Consensus 406 --~l~s~s~dg~V~lwD~~~~~~~~~~~~---------~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~ 474 (564)
+|++|..+|.|.+||+.++..+..+.. .+..++.++.|.+.-..=++|+.+..+..|++......- ..
T Consensus 165 ~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gsl-q~ 243 (323)
T KOG0322|consen 165 TFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSL-QI 243 (323)
T ss_pred eEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcc-cc
Confidence 566777899999999999754443331 344567888887654455677777888899887531111 11
Q ss_pred eEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEE
Q 043172 475 IKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVF 554 (564)
Q Consensus 475 ~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~ 554 (564)
-..+.-....|..+..-||++++|+++. |+.||+|+.++..++..+ ..|.+.|++++|+|+...+|+++.|++|.
T Consensus 244 ~~e~~lknpGv~gvrIRpD~KIlATAGW--D~RiRVyswrtl~pLAVL---kyHsagvn~vAfspd~~lmAaaskD~rIS 318 (323)
T KOG0322|consen 244 RKEITLKNPGVSGVRIRPDGKILATAGW--DHRIRVYSWRTLNPLAVL---KYHSAGVNAVAFSPDCELMAAASKDARIS 318 (323)
T ss_pred cceEEecCCCccceEEccCCcEEeeccc--CCcEEEEEeccCCchhhh---hhhhcceeEEEeCCCCchhhhccCCceEE
Confidence 1122223456888999999999999999 999999999999887754 44558899999999999999999999999
Q ss_pred EEEc
Q 043172 555 LYKL 558 (564)
Q Consensus 555 lw~l 558 (564)
+|+|
T Consensus 319 LWkL 322 (323)
T KOG0322|consen 319 LWKL 322 (323)
T ss_pred eeec
Confidence 9987
No 169
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=5.2e-19 Score=190.86 Aligned_cols=249 Identities=14% Similarity=0.138 Sum_probs=197.1
Q ss_pred CCCCeeEEEEcCCCCE----EEEEeCCCcEEEEEecC----CCCceeEEEEeCCcCeEEEEEeeC-CCEEEEEeCCCeEE
Q 043172 261 STGPINSVQFHRNAQL----LLVAGLDRRLRFFQIDG----KRNTKIQSIFLEDCPVRKASFLPD-GSQAIIAGRRKFFY 331 (564)
Q Consensus 261 h~~~V~~l~fspdg~~----l~s~s~dg~I~lwd~~~----~~~~~~~~~~~~~~~I~~l~fspd-g~~l~s~~~dg~i~ 331 (564)
....-+.++|.+.|.. ||.|..||.|.+|+... .....+.+...|.++|..+.|++. ++.|++|+.+|.|.
T Consensus 63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~ 142 (1049)
T KOG0307|consen 63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEIL 142 (1049)
T ss_pred ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEE
Confidence 3457889999997765 88888899999999763 234456677789999999999995 55999999999999
Q ss_pred EEECCCCceeeeccccccCCcceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCcEEEEee-ec--CcEEEEEEecCC-CE
Q 043172 332 SLDLVKAKADKIGPLVGREEKSLEFFEVSPD-SSVIAFVGNEGYILLVSSKTKELIGTLK-MN--GTVRSLAFADDG-KQ 406 (564)
Q Consensus 332 iwdl~~~~~~~~~~~~~~~~~~v~~~~~spd-g~~la~~~~dg~I~lwd~~t~~~~~~~~-~~--~~V~~l~~spdg-~~ 406 (564)
|||++..+...... .......|.+++|+.. .+.|++++.+|.+.|||++..+.+-.+. +. ..+..++|+|+. ..
T Consensus 143 iWDlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTq 221 (1049)
T KOG0307|consen 143 IWDLNKPETPFTPG-SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQ 221 (1049)
T ss_pred EeccCCcCCCCCCC-CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCcee
Confidence 99999854322111 1112246999999875 5678889999999999999998887776 32 358899999975 45
Q ss_pred EEEEeCC---CeEEEEECCCCceeEEEeecCCcceEEEEECCCC-CEEEEEeCCCcEEEEeCCcccCCcceeeEEccccc
Q 043172 407 LLSSGGD---GQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDG-TFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLT 482 (564)
Q Consensus 407 l~s~s~d---g~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g-~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~ 482 (564)
|++++.| -.|.+||+|.-....+....|..+|.++.|++.+ ++|++++.|+.|.+|+..++ ..+..+....
T Consensus 222 l~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg-----Evl~~~p~~~ 296 (1049)
T KOG0307|consen 222 LLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG-----EVLGELPAQG 296 (1049)
T ss_pred eeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc-----eEeeecCCCC
Confidence 6666654 3699999987544333334556689999999977 79999999999999999998 8999998888
Q ss_pred cceeEEEEcCCCc-EEEEEecCCCCeEEEEEcCCCc
Q 043172 483 TKVDFMKFNNDAQ-ILAICSTMKKNSLKLIHIPSYN 517 (564)
Q Consensus 483 ~~I~~l~fspdg~-~La~~s~~~d~~I~lwdl~s~~ 517 (564)
.++..+.|+|... .+++++. +|.|.|+.+.++.
T Consensus 297 nW~fdv~w~pr~P~~~A~asf--dgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 297 NWCFDVQWCPRNPSVMAAASF--DGKISIYSLQGTD 330 (1049)
T ss_pred cceeeeeecCCCcchhhhhee--ccceeeeeeecCC
Confidence 9999999999766 6777777 9999999997765
No 170
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=5.9e-18 Score=170.74 Aligned_cols=246 Identities=13% Similarity=0.130 Sum_probs=194.9
Q ss_pred eEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCC--EEEEEeCCCeEE
Q 043172 299 IQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSS--VIAFVGNEGYIL 376 (564)
Q Consensus 299 ~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~--~la~~~~dg~I~ 376 (564)
...+.+|.+.|.++...|.|.+|++|+.||+|+||.+.+|.+.+...+.+ .|.|++|+|.+. .||++- ...+.
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~----~I~~vaw~P~~~~~vLAvA~-~~~~~ 467 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS----EIRSVAWNPLSDLCVLAVAV-GECVL 467 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc----eeEEEEecCCCCceeEEEEe-cCceE
Confidence 44567899999999999999999999999999999999999987665544 599999999765 344433 23344
Q ss_pred EEECCCC--------------------------------------cEEEEeeecCcEEEEEEecCCCEEEEEeCC---Ce
Q 043172 377 LVSSKTK--------------------------------------ELIGTLKMNGTVRSLAFADDGKQLLSSGGD---GQ 415 (564)
Q Consensus 377 lwd~~t~--------------------------------------~~~~~~~~~~~V~~l~~spdg~~l~s~s~d---g~ 415 (564)
|.+..-| .....++|...|..+.|+..|.+|++...+ ..
T Consensus 468 ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~ 547 (733)
T KOG0650|consen 468 IVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKS 547 (733)
T ss_pred EeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcce
Confidence 4432111 012234578899999999999999988654 57
Q ss_pred EEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCc
Q 043172 416 VYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQ 495 (564)
Q Consensus 416 V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~ 495 (564)
|.|+++..+..+.-|...++ .+.++.|+|...+|++++.. .|+|||+... ..++.+.....+|+.++.+|.|.
T Consensus 548 VliHQLSK~~sQ~PF~kskG-~vq~v~FHPs~p~lfVaTq~-~vRiYdL~kq-----elvKkL~tg~kwiS~msihp~GD 620 (733)
T KOG0650|consen 548 VLIHQLSKRKSQSPFRKSKG-LVQRVKFHPSKPYLFVATQR-SVRIYDLSKQ-----ELVKKLLTGSKWISSMSIHPNGD 620 (733)
T ss_pred EEEEecccccccCchhhcCC-ceeEEEecCCCceEEEEecc-ceEEEehhHH-----HHHHHHhcCCeeeeeeeecCCCC
Confidence 99999987776655544444 57899999999999888765 8999999876 77777877788999999999999
Q ss_pred EEEEEecCCCCeEEEEEcCCC-ceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCCC
Q 043172 496 ILAICSTMKKNSLKLIHIPSY-NVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNHY 561 (564)
Q Consensus 496 ~La~~s~~~d~~I~lwdl~s~-~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~~ 561 (564)
.|++++. ++.+..+|+.-. ++++ +...|...+++++|++.-.+|++|+.||.+.||--.-|
T Consensus 621 nli~gs~--d~k~~WfDldlsskPyk---~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY 682 (733)
T KOG0650|consen 621 NLILGSY--DKKMCWFDLDLSSKPYK---TLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVY 682 (733)
T ss_pred eEEEecC--CCeeEEEEcccCcchhH---HhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeee
Confidence 9999999 999999999754 3333 44556688999999999999999999999999864433
No 171
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=8.1e-19 Score=176.30 Aligned_cols=255 Identities=14% Similarity=0.160 Sum_probs=196.9
Q ss_pred CCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEec------CCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeE
Q 043172 257 ADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQID------GKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFF 330 (564)
Q Consensus 257 ~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~------~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i 330 (564)
+...|...|++++|+|....|++|+.||+|.+|++. .....++.++.+|.+||.|++..+++.++++||.||+|
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I 368 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI 368 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence 455699999999999999999999999999999993 22345788899999999999999999999999999999
Q ss_pred EEEECCCCce--------eeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee---ecCcEEEEE
Q 043172 331 YSLDLVKAKA--------DKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK---MNGTVRSLA 399 (564)
Q Consensus 331 ~iwdl~~~~~--------~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~---~~~~V~~l~ 399 (564)
+.|++....- .....+.||.. .++.+++|+....|++++.||++++|......+ .++. -.+...++.
T Consensus 369 ~~w~~p~n~dp~ds~dp~vl~~~l~Ghtd-avw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd 446 (577)
T KOG0642|consen 369 RCWNLPPNQDPDDSYDPSVLSGTLLGHTD-AVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVD 446 (577)
T ss_pred eeeccCCCCCcccccCcchhccceecccc-ceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEe
Confidence 9997652210 11234667776 799999999999999999999999999877766 3343 334456666
Q ss_pred EecCC-CEEEEEeCCCeEEEEECCCCceeEEEeec---C---CcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcc
Q 043172 400 FADDG-KQLLSSGGDGQVYHWDLRTRTCIHRAVDE---G---CINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKR 472 (564)
Q Consensus 400 ~spdg-~~l~s~s~dg~V~lwD~~~~~~~~~~~~~---~---~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~ 472 (564)
+-... ...++...-+.-.++++.....+..+... + ...+..+.++|++.+.+++..++.|+++|..++
T Consensus 447 ~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~----- 521 (577)
T KOG0642|consen 447 RTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG----- 521 (577)
T ss_pred eccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc-----
Confidence 65332 22222222333334444444433333221 1 124567888899999999999999999999998
Q ss_pred eeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceec
Q 043172 473 KPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFS 520 (564)
Q Consensus 473 ~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~ 520 (564)
.+++....|...++++++-|+|-+|++++. |+.+++|.+...++..
T Consensus 522 ~~l~s~~a~~~svtslai~~ng~~l~s~s~--d~sv~l~kld~k~~~~ 567 (577)
T KOG0642|consen 522 KILHSMVAHKDSVTSLAIDPNGPYLMSGSH--DGSVRLWKLDVKTCVL 567 (577)
T ss_pred ccchheeeccceecceeecCCCceEEeecC--Cceeehhhccchheee
Confidence 999999999999999999999999999999 9999999997665544
No 172
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.79 E-value=4.8e-17 Score=156.09 Aligned_cols=238 Identities=18% Similarity=0.253 Sum_probs=182.8
Q ss_pred cCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCC--CeEEEEECCCCc
Q 043172 307 CPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNE--GYILLVSSKTKE 384 (564)
Q Consensus 307 ~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d--g~I~lwd~~t~~ 384 (564)
..+..+.|..+...|..|+.+| .++|....... .. -.....-.|--+-|+ ..++|..+.+ ..+++++.+.+.
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k--~~-~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~ 79 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEK--CF-SKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKT 79 (391)
T ss_pred cceeeeeeccceeEEEccCCCc-eeEEecCchHH--hh-cccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCc
Confidence 3456667888888888888887 56776654322 10 011111234445555 4566666654 569999999999
Q ss_pred EEEEeeecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeec--CCcceEEEEECCCCCEEEEEe--CCCcEE
Q 043172 385 LIGTLKMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDE--GCINGTALCTSPDGTFFAAGS--DSGIVN 460 (564)
Q Consensus 385 ~~~~~~~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~--~~~~i~~l~~sp~g~~lasgs--~dg~V~ 460 (564)
.+..+.....|.++.++. +.|+++-.+ .|+|||+++.+.++++... +..++..+++++.+.|+|.-+ ..|.|.
T Consensus 80 ~ICe~~fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~ 156 (391)
T KOG2110|consen 80 TICEIFFPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV 156 (391)
T ss_pred eEEEEecCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence 999999999999999974 356666554 4999999999999887764 444455555555566888653 478999
Q ss_pred EEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCC-eEEEEEcCCCceeccCCCCCCCCCCcEEEEEeC
Q 043172 461 VYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKN-SLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSP 539 (564)
Q Consensus 461 iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~-~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fsp 539 (564)
|||..+. +++.++..|.+++.+++|+++|.+||++|. .| .||++++++++.+..|..... ...|.+++|+|
T Consensus 157 l~d~~nl-----~~v~~I~aH~~~lAalafs~~G~llATASe--KGTVIRVf~v~~G~kl~eFRRG~~-~~~IySL~Fs~ 228 (391)
T KOG2110|consen 157 LFDTINL-----QPVNTINAHKGPLAALAFSPDGTLLATASE--KGTVIRVFSVPEGQKLYEFRRGTY-PVSIYSLSFSP 228 (391)
T ss_pred EEEcccc-----eeeeEEEecCCceeEEEECCCCCEEEEecc--CceEEEEEEcCCccEeeeeeCCce-eeEEEEEEECC
Confidence 9999988 999999999999999999999999999998 55 589999999999887765544 46699999999
Q ss_pred CCCEEEEEcCCCeEEEEEcCCC
Q 043172 540 GGGFMAVGNAAGKVFLYKLNHY 561 (564)
Q Consensus 540 dg~~Lasgs~dG~V~lw~l~~~ 561 (564)
++++|++.+..++|+||.|.+-
T Consensus 229 ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 229 DSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred CCCeEEEecCCCeEEEEEeccc
Confidence 9999999999999999999754
No 173
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=5.5e-17 Score=147.32 Aligned_cols=274 Identities=15% Similarity=0.223 Sum_probs=194.2
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEEecCC--------CCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEEC
Q 043172 264 PINSVQFHRNAQLLLVAGLDRRLRFFQIDGK--------RNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDL 335 (564)
Q Consensus 264 ~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~--------~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl 335 (564)
.|.+-+++|.+++|++|..+|+|.++.+..- ...++...+.|.+||+.++|. ..+|++|+ ||.|+-|..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeee
Confidence 4677789999999999999999999988521 223455568899999999998 34666665 699998876
Q ss_pred CCCce----eeecc--cccc----CCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEecCC
Q 043172 336 VKAKA----DKIGP--LVGR----EEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDG 404 (564)
Q Consensus 336 ~~~~~----~~~~~--~~~~----~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg 404 (564)
+.... ..... .+.+ .-..|+.+.+.|..+-+++++.|+.++-||+++|+..++++ |...|.++.--...
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~ 168 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNAN 168 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccC
Confidence 53221 11111 1111 11358899999988888888899999999999999999999 99999999985555
Q ss_pred CEEEEEeCCCeEEEEECCCCceeEEEeec---------CCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceee
Q 043172 405 KQLLSSGGDGQVYHWDLRTRTCIHRAVDE---------GCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPI 475 (564)
Q Consensus 405 ~~l~s~s~dg~V~lwD~~~~~~~~~~~~~---------~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~ 475 (564)
..+++|+.||++++||.++++++..+... .+..|.+++ -+..|+++|+. ..+.+|.++.. .+.
T Consensus 169 ~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGgG-p~lslwhLrss-----e~t 240 (325)
T KOG0649|consen 169 GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGGG-PKLSLWHLRSS-----EST 240 (325)
T ss_pred cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecCC-CceeEEeccCC-----Cce
Confidence 67999999999999999999998876542 222344444 45668888765 47899999986 555
Q ss_pred EEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCC-CCEEEEEcCCCeEE
Q 043172 476 KTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPG-GGFMAVGNAAGKVF 554 (564)
Q Consensus 476 ~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspd-g~~Lasgs~dG~V~ 554 (564)
.++. ...++..+.|-.+ .+++++. .+.|.-|.+. |.+..+.|... ...++..|+.. -++|..++...++.
T Consensus 241 ~vfp-ipa~v~~v~F~~d--~vl~~G~--g~~v~~~~l~-Gvl~a~ip~~s---~~c~s~s~~~~p~k~~s~ag~s~~~~ 311 (325)
T KOG0649|consen 241 CVFP-IPARVHLVDFVDD--CVLIGGE--GNHVQSYTLN-GVLQANIPVES---TACYSASWQTSPIKFISIAGFSNKLH 311 (325)
T ss_pred EEEe-cccceeEeeeecc--eEEEecc--ccceeeeeec-cEEEEeccCCc---cceeeecccCCceEEEEecccceeee
Confidence 5554 3566777888644 4555554 5688888874 44444444432 22334444322 35676777777887
Q ss_pred EEE
Q 043172 555 LYK 557 (564)
Q Consensus 555 lw~ 557 (564)
|+.
T Consensus 312 i~~ 314 (325)
T KOG0649|consen 312 ILK 314 (325)
T ss_pred eee
Confidence 764
No 174
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.79 E-value=1.3e-17 Score=161.64 Aligned_cols=273 Identities=17% Similarity=0.222 Sum_probs=189.7
Q ss_pred eEEcCCCccCCCeeeeeeeecc---------cCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEec--------C---
Q 043172 234 LVVKSSAKLSPGLLEYSRLIDA---------NADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQID--------G--- 293 (564)
Q Consensus 234 ~~~~~~~~l~~~~~d~~rl~~~---------~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~--------~--- 293 (564)
.+++++.+-...+|.+.|-.+. .....|...|++|.|+|+|.+||+|+.+|.|.+|... +
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~ 107 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEAD 107 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhh
Confidence 4444444444445554433332 2345799999999999999999999999999999875 1
Q ss_pred ---CCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEe
Q 043172 294 ---KRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVG 370 (564)
Q Consensus 294 ---~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~ 370 (564)
........+.+|...|+.++|+|++.++++++.+..+++||+..|+...+ +..|. ..+..++|.|-++++++-+
T Consensus 108 ~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~--~~dh~-~yvqgvawDpl~qyv~s~s 184 (434)
T KOG1009|consen 108 LNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAI--LDDHE-HYVQGVAWDPLNQYVASKS 184 (434)
T ss_pred hCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEee--ccccc-cccceeecchhhhhhhhhc
Confidence 11223445667889999999999999999999999999999999997553 44444 3789999999999999988
Q ss_pred CCCeEEEEECCCCcEEEEee--------------------ec----CcEEEEEEecCCCEEEEEeC----CC-----eEE
Q 043172 371 NEGYILLVSSKTKELIGTLK--------------------MN----GTVRSLAFADDGKQLLSSGG----DG-----QVY 417 (564)
Q Consensus 371 ~dg~I~lwd~~t~~~~~~~~--------------------~~----~~V~~l~~spdg~~l~s~s~----dg-----~V~ 417 (564)
.|...+.+.+...+.+.... |+ .-...++|+|+|.+|++... .+ ..|
T Consensus 185 ~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tY 264 (434)
T KOG1009|consen 185 SDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSY 264 (434)
T ss_pred cCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeE
Confidence 88766666665443322211 22 22456789999998887642 22 234
Q ss_pred EEECCC-CceeEEEeecCCcceEEEEECC------------------CCCEEEEEeCCCcEEEEeCCcccCCcceeeEEc
Q 043172 418 HWDLRT-RTCIHRAVDEGCINGTALCTSP------------------DGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTI 478 (564)
Q Consensus 418 lwD~~~-~~~~~~~~~~~~~~i~~l~~sp------------------~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~ 478 (564)
+|+-.. .++...+.... .....+.++| -+-.+|+++.+ .|.|||.... .|+...
T Consensus 265 vfsrk~l~rP~~~lp~~~-k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~-svyvydtq~~-----~P~~~v 337 (434)
T KOG1009|consen 265 VFSRKDLKRPAARLPSPK-KPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKN-SVYVYDTQTL-----EPLAVV 337 (434)
T ss_pred eeccccccCceeecCCCC-cceEEEEeeeeEEEeccccccccccccccceEEEEeecc-eEEEeccccc-----cceEEE
Confidence 554332 12222222111 1222333332 23355666655 8999999886 788777
Q ss_pred cc-cccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCce
Q 043172 479 EN-LTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNV 518 (564)
Q Consensus 479 ~~-~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~ 518 (564)
.+ |-..|+.++|++||..|++.|. ||...+..+...+.
T Consensus 338 ~nihy~~iTDiaws~dg~~l~vSS~--DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 338 DNIHYSAITDIAWSDDGSVLLVSST--DGFCSLVTFEPWEL 376 (434)
T ss_pred eeeeeeeecceeecCCCcEEEEecc--CCceEEEEEcchhc
Confidence 54 6789999999999999999999 99888887765544
No 175
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.79 E-value=2.1e-16 Score=161.44 Aligned_cols=248 Identities=14% Similarity=0.112 Sum_probs=168.1
Q ss_pred CCCCeeEEEEcCCCCEEEEEe-CCCcEEEEEecCC-CCceeEEEEeCCcCeEEEEEeeCCCEEEEEe-CCCeEEEEECCC
Q 043172 261 STGPINSVQFHRNAQLLLVAG-LDRRLRFFQIDGK-RNTKIQSIFLEDCPVRKASFLPDGSQAIIAG-RRKFFYSLDLVK 337 (564)
Q Consensus 261 h~~~V~~l~fspdg~~l~s~s-~dg~I~lwd~~~~-~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~-~dg~i~iwdl~~ 337 (564)
+.+....++|+|++++|++++ .++.|.+|+++.. ....+.... .......++|+|++++|++++ .++.|.+|++.+
T Consensus 33 ~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~ 111 (330)
T PRK11028 33 VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDK 111 (330)
T ss_pred cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECC
Confidence 335677899999999987765 4788999999731 112222222 233467899999999999887 478999999974
Q ss_pred -Ccee-eeccccccCCcceEEEEEcCCCCEEEEEeC-CCeEEEEECCCCcEEE-------EeeecCcEEEEEEecCCCEE
Q 043172 338 -AKAD-KIGPLVGREEKSLEFFEVSPDSSVIAFVGN-EGYILLVSSKTKELIG-------TLKMNGTVRSLAFADDGKQL 407 (564)
Q Consensus 338 -~~~~-~~~~~~~~~~~~v~~~~~spdg~~la~~~~-dg~I~lwd~~t~~~~~-------~~~~~~~V~~l~~spdg~~l 407 (564)
+... .+..+.+. ....+++++|+++++++++. ++.|.+||+.+...+. ..........++|+|+|++|
T Consensus 112 ~g~~~~~~~~~~~~--~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~l 189 (330)
T PRK11028 112 DGIPVAPIQIIEGL--EGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYA 189 (330)
T ss_pred CCCCCCceeeccCC--CcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEE
Confidence 3221 11112221 23567889999998876654 5999999997633221 11223456789999999999
Q ss_pred EEEeC-CCeEEEEECCC--Cc--eeEEEeec-----CCcceEEEEECCCCCEEEEEeC-CCcEEEEeCCcccCCcceeeE
Q 043172 408 LSSGG-DGQVYHWDLRT--RT--CIHRAVDE-----GCINGTALCTSPDGTFFAAGSD-SGIVNVYNRQEFLGGKRKPIK 476 (564)
Q Consensus 408 ~s~s~-dg~V~lwD~~~--~~--~~~~~~~~-----~~~~i~~l~~sp~g~~lasgs~-dg~V~iwd~~~~~~~~~~~~~ 476 (564)
+++.. +++|.+|++.. +. .+..+... +......+.++|++++++++.. ++.|.+|++.... ...+.+.
T Consensus 190 yv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~-~~~~~~~ 268 (330)
T PRK11028 190 YCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDG-SVLSFEG 268 (330)
T ss_pred EEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCC-CeEEEeE
Confidence 88876 89999999973 22 23222211 1112346889999999988854 7899999986530 1112233
Q ss_pred EccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcC
Q 043172 477 TIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIP 514 (564)
Q Consensus 477 ~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~ 514 (564)
.+.. ......+.|+|+|++|+++... +++|.+|++.
T Consensus 269 ~~~~-~~~p~~~~~~~dg~~l~va~~~-~~~v~v~~~~ 304 (330)
T PRK11028 269 HQPT-ETQPRGFNIDHSGKYLIAAGQK-SHHISVYEID 304 (330)
T ss_pred EEec-cccCCceEECCCCCEEEEEEcc-CCcEEEEEEc
Confidence 3222 2345689999999999998754 7899999885
No 176
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.78 E-value=7.1e-18 Score=171.63 Aligned_cols=251 Identities=10% Similarity=0.105 Sum_probs=194.7
Q ss_pred eeeeeeeecccCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEe
Q 043172 246 LLEYSRLIDANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAG 325 (564)
Q Consensus 246 ~~d~~rl~~~~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~ 325 (564)
++|...-.-.++..+|...|+|++|+.+|+++++|+.|+.|.+|.-.-. -+ --..|...|.|+.|+|-...|++++
T Consensus 37 iyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE---G~-LkYSH~D~IQCMsFNP~~h~LasCs 112 (1081)
T KOG1538|consen 37 VYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE---GI-LKYSHNDAIQCMSFNPITHQLASCS 112 (1081)
T ss_pred EEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccc---ce-eeeccCCeeeEeecCchHHHhhhcc
Confidence 3444444455678899999999999999999999999999999965321 11 1235889999999999999999987
Q ss_pred CCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee----ecCcEEEEEEe
Q 043172 326 RRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK----MNGTVRSLAFA 401 (564)
Q Consensus 326 ~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~----~~~~V~~l~~s 401 (564)
-+ .+-+|......+.+. .....+.+++|..||.+++.|-.+|+|.+-+. +++....+. .+.+|.+++|+
T Consensus 113 Ls-dFglWS~~qK~V~K~-----kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~ 185 (1081)
T KOG1538|consen 113 LS-DFGLWSPEQKSVSKH-----KSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWN 185 (1081)
T ss_pred hh-hccccChhhhhHHhh-----hhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEec
Confidence 54 477888765544221 11235889999999999999999999999874 444433333 56799999999
Q ss_pred cCC-----CEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeE
Q 043172 402 DDG-----KQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIK 476 (564)
Q Consensus 402 pdg-----~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~ 476 (564)
|.. ..+++.....++.++.+. |+.+..-..- .....|+.+.++|.|+..|+.++.+.+|-... -.+.
T Consensus 186 p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L-~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~G------vrLG 257 (1081)
T KOG1538|consen 186 PSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRAL-NFDPCCISYFTNGEYILLGGSDKQLSLFTRDG------VRLG 257 (1081)
T ss_pred CCCCCCccceEEEEeccceeEEEEec-ceeecccccC-CCCchhheeccCCcEEEEccCCCceEEEeecC------eEEe
Confidence 953 467777778888888876 4444322211 22446888999999999999999999998765 6778
Q ss_pred EccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCc
Q 043172 477 TIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYN 517 (564)
Q Consensus 477 ~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~ 517 (564)
++....++|+.++..|+++++++|+. ||+|--|++...+
T Consensus 258 Tvg~~D~WIWtV~~~PNsQ~v~~GCq--DGTiACyNl~fST 296 (1081)
T KOG1538|consen 258 TVGEQDSWIWTVQAKPNSQYVVVGCQ--DGTIACYNLIFST 296 (1081)
T ss_pred eccccceeEEEEEEccCCceEEEEEc--cCeeehhhhHHhH
Confidence 88888999999999999999999999 9999999885433
No 177
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.78 E-value=1.1e-17 Score=166.83 Aligned_cols=262 Identities=15% Similarity=0.202 Sum_probs=192.4
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeE-EEEEe-------eCCCEEEEEeCCCeEE
Q 043172 260 SSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVR-KASFL-------PDGSQAIIAGRRKFFY 331 (564)
Q Consensus 260 ~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~-~l~fs-------pdg~~l~s~~~dg~i~ 331 (564)
-|...|.|+.|+.+...+.+++.+..+.-|++..... ..+......|. .+..- .....++.++.||.+.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~---~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~ 88 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSV---EVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFV 88 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhh---hhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEE
Confidence 3777888999999888887776555555555543221 11111111111 11111 1235788888999999
Q ss_pred EEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEE
Q 043172 332 SLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSS 410 (564)
Q Consensus 332 iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~ 410 (564)
+.+-. +++.+ .+..|. ..+.+-.|+|+|.-|+++|.||.|++|. ++|....++. ...+|.|++|.|+.+.++.+
T Consensus 89 il~k~-~rVE~--sv~AH~-~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c 163 (737)
T KOG1524|consen 89 ILNKS-ARVER--SISAHA-AAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFC 163 (737)
T ss_pred Eeccc-chhhh--hhhhhh-hhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEe
Confidence 98743 44322 234444 4788999999999999999999999998 5665544444 56789999999988766655
Q ss_pred eCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEE
Q 043172 411 GGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKF 490 (564)
Q Consensus 411 s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~f 490 (564)
. .+.+.+=-+.....+.+|..|.+ -|.++.|++...++++|+.|-..+|||... .++.+-..|..+|++++|
T Consensus 164 ~-g~h~~IKpL~~n~k~i~WkAHDG-iiL~~~W~~~s~lI~sgGED~kfKvWD~~G------~~Lf~S~~~ey~ITSva~ 235 (737)
T KOG1524|consen 164 Q-GGHISIKPLAANSKIIRWRAHDG-LVLSLSWSTQSNIIASGGEDFRFKIWDAQG------ANLFTSAAEEYAITSVAF 235 (737)
T ss_pred c-CCeEEEeecccccceeEEeccCc-EEEEeecCccccceeecCCceeEEeecccC------cccccCChhccceeeeee
Confidence 4 35788877777777778887766 589999999999999999999999999875 788888899999999999
Q ss_pred cCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEE
Q 043172 491 NNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFL 555 (564)
Q Consensus 491 spdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~l 555 (564)
+|+ ..++.+|. +++|+= ....+.|..++|||||..+++|+..|.|.+
T Consensus 236 npd-~~~~v~S~---nt~R~~--------------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 236 NPE-KDYLLWSY---NTARFS--------------SPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred ccc-cceeeeee---eeeeec--------------CCCccceEEEEEcCCCceeeccccCceEEE
Confidence 999 77777875 566621 112377999999999999999999998754
No 178
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=4.1e-17 Score=159.28 Aligned_cols=200 Identities=19% Similarity=0.221 Sum_probs=161.5
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEee-
Q 043172 355 EFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVD- 432 (564)
Q Consensus 355 ~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~- 432 (564)
.+++|+++|..|++++.||++++|+..+...+.... |.+.|.++.|+|||++|++.+.| ..+||++.++.++....+
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 579999999999999999999999987776665555 89999999999999999999999 899999999987776653
Q ss_pred cCCcceEEEEECCCC-----CEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCe
Q 043172 433 EGCINGTALCTSPDG-----TFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNS 507 (564)
Q Consensus 433 ~~~~~i~~l~~sp~g-----~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~ 507 (564)
........+.|+.++ +.++....-+.|+.|++..+...+.-+.+........|++++.+++|+++|.|+. +|.
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~--dGs 304 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTM--DGS 304 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEecc--CCc
Confidence 334445677788776 3334445567788888776532222234444444568999999999999999999 999
Q ss_pred EEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q 043172 508 LKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLN 559 (564)
Q Consensus 508 I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~ 559 (564)
|-|++..+.+.+.-.+ ..|.+.|+.+.|+|+.+++++.+.+..+.|..|.
T Consensus 305 Vai~~~~~lq~~~~vk--~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 305 VAIYDAKSLQRLQYVK--EAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred EEEEEeceeeeeEeeh--hhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 9999999988877544 4577899999999999999999999888888775
No 179
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.77 E-value=1.8e-17 Score=159.81 Aligned_cols=213 Identities=15% Similarity=0.245 Sum_probs=174.2
Q ss_pred EEEeCCcCeEEEEEee-CCCEEEEEeCCCeEEEEECCCCcee-----eeccccccCCcceEEEEEcCC-CCEEEEEeCCC
Q 043172 301 SIFLEDCPVRKASFLP-DGSQAIIAGRRKFFYSLDLVKAKAD-----KIGPLVGREEKSLEFFEVSPD-SSVIAFVGNEG 373 (564)
Q Consensus 301 ~~~~~~~~I~~l~fsp-dg~~l~s~~~dg~i~iwdl~~~~~~-----~~~~~~~~~~~~v~~~~~spd-g~~la~~~~dg 373 (564)
.+.+|.++|..++|+| +.+.|++|+.|.+|.||.+..+... .+..+.||.. .|..++|+|. .+.|++++.|.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~r-rVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQR-RVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecce-eEEEEeecccchhhHhhccCCc
Confidence 3568999999999999 6678889999999999998765432 2445677776 7999999996 56889999999
Q ss_pred eEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEE
Q 043172 374 YILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAG 453 (564)
Q Consensus 374 ~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasg 453 (564)
.|.+|++.+++.+-++.|...|.+++|+.+|.+|++++.|..|+|||.++++.+..-..+.+.....+.|-.+|.++-+|
T Consensus 155 ~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTG 234 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTG 234 (472)
T ss_pred eEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeec
Confidence 99999999999999999999999999999999999999999999999999999987766655556677788889866666
Q ss_pred e---CCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCce
Q 043172 454 S---DSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNV 518 (564)
Q Consensus 454 s---~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~ 518 (564)
. .+..+.+||.... ..+-.+..+.. ...|.---|.+|..+++.++.+ |+.||.|.+....+
T Consensus 235 fsr~seRq~aLwdp~nl--~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKG-D~~IRYyEit~d~P 298 (472)
T KOG0303|consen 235 FSRMSERQIALWDPNNL--EEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKG-DSSIRYFEITNEPP 298 (472)
T ss_pred cccccccceeccCcccc--cCcceeEEecc-CCceEEeeecCCCCEEEEEecC-CcceEEEEecCCCc
Confidence 4 4678999998876 33444445543 4556666788999988887765 99999999977653
No 180
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=7.5e-17 Score=171.99 Aligned_cols=294 Identities=16% Similarity=0.210 Sum_probs=208.9
Q ss_pred CCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEe---CCcCeEEEEEee--CCCEEEEEeCCCeEEE
Q 043172 258 DESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFL---EDCPVRKASFLP--DGSQAIIAGRRKFFYS 332 (564)
Q Consensus 258 ~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~---~~~~I~~l~fsp--dg~~l~s~~~dg~i~i 332 (564)
..+...+-..+.|||-.+.++++...-.|+|||... +..+..+.. ....|+.+.+-. |...+++++.||.|+|
T Consensus 1060 ~~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~--~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRI 1137 (1387)
T KOG1517|consen 1060 MTGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEK--GRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRI 1137 (1387)
T ss_pred HhcCCCCCceeeecCCCceeEEcCCcceEEEEeccc--CceeccccCCCCCCCccceeeeecccchhheeeeccCceEEE
Confidence 344445788899999999999998788999999873 334444443 345688888875 5578899999999999
Q ss_pred EECCCC---ceeeec---cc----cccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee--ecCcEEEEEE
Q 043172 333 LDLVKA---KADKIG---PL----VGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK--MNGTVRSLAF 400 (564)
Q Consensus 333 wdl~~~---~~~~~~---~~----~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~--~~~~V~~l~~ 400 (564)
|+--.. +...+. .+ .+..+.. .-+.|.....+|+++|.-..|+|||+...+.+..+. ....|+++.-
T Consensus 1138 wk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~-~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~ 1216 (1387)
T KOG1517|consen 1138 WKDYADKWKKPELVTAWSSLSDQLPGARGTG-LVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSA 1216 (1387)
T ss_pred ecccccccCCceeEEeeccccccCccCCCCC-eeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecc
Confidence 974322 111111 11 1222222 457788877788888778999999999888888776 4456777765
Q ss_pred ec-CCCEEEEEeCCCeEEEEECCCCc---eeEEEeecCC-cceEEEEECCCCC-EEEEEeCCCcEEEEeCCcccCCccee
Q 043172 401 AD-DGKQLLSSGGDGQVYHWDLRTRT---CIHRAVDEGC-INGTALCTSPDGT-FFAAGSDSGIVNVYNRQEFLGGKRKP 474 (564)
Q Consensus 401 sp-dg~~l~s~s~dg~V~lwD~~~~~---~~~~~~~~~~-~~i~~l~~sp~g~-~lasgs~dg~V~iwd~~~~~~~~~~~ 474 (564)
+. .|+.|++|..||.|++||.+... .+..+..+.. .+|..+.+.++|- .|++|+.+|.|.+||++... ...
T Consensus 1217 ~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~---~e~ 1293 (1387)
T KOG1517|consen 1217 DLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSS---KET 1293 (1387)
T ss_pred cccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCc---ccc
Confidence 43 57999999999999999998643 2333433322 1378888888765 59999999999999999731 111
Q ss_pred eEEcccc---ccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCce--eccCCCC-CCCCCCcEEEEEeCCCCEEEEEc
Q 043172 475 IKTIENL---TTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNV--FSNWPPA-NRNLQYPRCLDFSPGGGFMAVGN 548 (564)
Q Consensus 475 ~~~~~~~---~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~--~~~~~~~-~~~~~~V~~l~fspdg~~Lasgs 548 (564)
..++..| .+..+++..+++..++|+|+. +.|+||++..... +...+.. ....+.+.|++|+|.--+||+|+
T Consensus 1294 ~~~iv~~~~yGs~lTal~VH~hapiiAsGs~---q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~ 1370 (1387)
T KOG1517|consen 1294 FLTIVAHWEYGSALTALTVHEHAPIIASGSA---QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGS 1370 (1387)
T ss_pred cceeeeccccCccceeeeeccCCCeeeecCc---ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhcc
Confidence 1122222 235999999999999999985 7899999964322 2222222 22346789999999999999999
Q ss_pred CCCeEEEEEcCC
Q 043172 549 AAGKVFLYKLNH 560 (564)
Q Consensus 549 ~dG~V~lw~l~~ 560 (564)
.|.+|.||....
T Consensus 1371 ~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1371 ADSTVSIYSCEK 1382 (1387)
T ss_pred CCceEEEeecCC
Confidence 999999998754
No 181
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.77 E-value=2.2e-17 Score=155.91 Aligned_cols=247 Identities=14% Similarity=0.135 Sum_probs=185.9
Q ss_pred CCCCCeeEEEEcCC----CCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCC-CEEEEEeCCCeEEEEE
Q 043172 260 SSTGPINSVQFHRN----AQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDG-SQAIIAGRRKFFYSLD 334 (564)
Q Consensus 260 ~h~~~V~~l~fspd----g~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg-~~l~s~~~dg~i~iwd 334 (564)
.|....+.++|+-+ .++||.||.-|.|+|.|+. +......+.+|...|..+.|.|+. ++|++++.|..|++|+
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~--~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwn 164 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVV--SGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWN 164 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecc--hhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEe
Confidence 47888899999863 4689999999999999987 556788889999999999999954 7888999999999999
Q ss_pred CCCCceeeecc-ccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE-------------------------
Q 043172 335 LVKAKADKIGP-LVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGT------------------------- 388 (564)
Q Consensus 335 l~~~~~~~~~~-~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~------------------------- 388 (564)
+.+..+..+.. +.||.. .|.++.|+++|.+|+++|.|.+|.+|++...+....
T Consensus 165 I~~~~Cv~VfGG~egHrd-eVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~ 243 (385)
T KOG1034|consen 165 IQTDVCVAVFGGVEGHRD-EVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPD 243 (385)
T ss_pred ccCCeEEEEecccccccC-cEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccc
Confidence 99999876643 344544 799999999999999999999999999974322111
Q ss_pred e----eecCcEEEEEEecCCCEEEEEeCCCeEEEEECC-CCce-------------eEEEeecC-CcceEEEEECCCCCE
Q 043172 389 L----KMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLR-TRTC-------------IHRAVDEG-CINGTALCTSPDGTF 449 (564)
Q Consensus 389 ~----~~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~-~~~~-------------~~~~~~~~-~~~i~~l~~sp~g~~ 449 (564)
+ .|...|-|+.|- |.++++-|.++.|..|... -.+. +..+.... .+.....+|.|-+++
T Consensus 244 fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~ 321 (385)
T KOG1034|consen 244 FSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKM 321 (385)
T ss_pred ccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHH
Confidence 1 044555566665 6789998999999999872 1111 11222121 222345566778899
Q ss_pred EEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcC
Q 043172 450 FAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIP 514 (564)
Q Consensus 450 lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~ 514 (564)
||.|.+.|.|.+||++..... ..+..+-......|...+|+.||.+|+.... +++|.-||.-
T Consensus 322 la~gnq~g~v~vwdL~~~ep~-~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcd--d~~Vwrwdrv 383 (385)
T KOG1034|consen 322 LALGNQSGKVYVWDLDNNEPP-KCTTLTHSKSGSTVRQTSFSRDGSILVLVCD--DGTVWRWDRV 383 (385)
T ss_pred HhhccCCCcEEEEECCCCCCc-cCceEEeccccceeeeeeecccCcEEEEEeC--CCcEEEEEee
Confidence 999999999999999986211 0111111223567899999999999999888 8999999864
No 182
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.77 E-value=2.6e-16 Score=165.92 Aligned_cols=265 Identities=14% Similarity=0.117 Sum_probs=187.3
Q ss_pred CcEEEEEecCCCCceeEEEEeCCcCeEEEEEee-CCCEEEEEeCCCeEEEEECCCCceee---eccccccCCcceEEEEE
Q 043172 284 RRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLP-DGSQAIIAGRRKFFYSLDLVKAKADK---IGPLVGREEKSLEFFEV 359 (564)
Q Consensus 284 g~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fsp-dg~~l~s~~~dg~i~iwdl~~~~~~~---~~~~~~~~~~~v~~~~~ 359 (564)
+.+.||++..... +-. ......+|.+++|+| +.+.++.|..+|.|.+||+..+.... +......+..++..+.|
T Consensus 222 ~~~~vW~~~~p~~-Pe~-~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW 299 (555)
T KOG1587|consen 222 GVLLVWSLKNPNT-PEL-VLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW 299 (555)
T ss_pred ceEEEEecCCCCC-ceE-EEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence 4799999986632 222 334567899999999 56677777799999999999876521 22223333457888888
Q ss_pred cCCC--CEEEEEeCCCeEEEEECCCCcE-E-----EEee-------ecCcEEEEEEec-CCCEEEEEeCCCeEEEEECCC
Q 043172 360 SPDS--SVIAFVGNEGYILLVSSKTKEL-I-----GTLK-------MNGTVRSLAFAD-DGKQLLSSGGDGQVYHWDLRT 423 (564)
Q Consensus 360 spdg--~~la~~~~dg~I~lwd~~t~~~-~-----~~~~-------~~~~V~~l~~sp-dg~~l~s~s~dg~V~lwD~~~ 423 (564)
-.+- .-|++++.||.|..|+++.-.. . .... ....++++.|.+ +...+++|+..|.|+.-+-..
T Consensus 300 ~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g 379 (555)
T KOG1587|consen 300 LQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKG 379 (555)
T ss_pred eccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccC
Confidence 7654 4499999999999998764322 1 1111 234689999988 567899999999998744332
Q ss_pred Ccee-------EEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCC-cccCCcceeeEEccccccceeEEEEcCCCc
Q 043172 424 RTCI-------HRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQ-EFLGGKRKPIKTIENLTTKVDFMKFNNDAQ 495 (564)
Q Consensus 424 ~~~~-------~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~-~~~~~~~~~~~~~~~~~~~I~~l~fspdg~ 495 (564)
.+.. +.....|...+.++.++|-+..++..+.|.+|+||... .. .|+..+..+...|++++|||.-.
T Consensus 380 ~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~-----~Pl~~~~~~~~~v~~vaWSptrp 454 (555)
T KOG1587|consen 380 YTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIA-----SPLLSLDSSPDYVTDVAWSPTRP 454 (555)
T ss_pred CcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCC-----CcchhhhhccceeeeeEEcCcCc
Confidence 2211 11122344578999999987655544449999999987 44 78888888888899999999765
Q ss_pred EEEEEecCCCCeEEEEEcCCCce--eccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q 043172 496 ILAICSTMKKNSLKLIHIPSYNV--FSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLN 559 (564)
Q Consensus 496 ~La~~s~~~d~~I~lwdl~s~~~--~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~ 559 (564)
-++++... +|.|.|||+..... ....+. .....+.+.|++.|+.|++|...|.+++|++.
T Consensus 455 avF~~~d~-~G~l~iWDLl~~~~~Pv~s~~~---~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 455 AVFATVDG-DGNLDIWDLLQDDEEPVLSQKV---CSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred eEEEEEcC-CCceehhhhhccccCCcccccc---cccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 55444433 99999999964322 222211 13456788899999999999999999999995
No 183
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.76 E-value=5.5e-17 Score=171.25 Aligned_cols=234 Identities=15% Similarity=0.129 Sum_probs=163.6
Q ss_pred CCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCC---CeEEEEECCCCceeeeccccccCCcceEEEEE
Q 043172 283 DRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRR---KFFYSLDLVKAKADKIGPLVGREEKSLEFFEV 359 (564)
Q Consensus 283 dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~d---g~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~ 359 (564)
+..|.+||.++.. .+.+..+...+.+.+|+|+|++|++++.+ ..|++||+.++....+..+.++ ...++|
T Consensus 183 ~~~i~i~d~dg~~---~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~----~~~~~w 255 (429)
T PRK01742 183 PYEVRVADYDGFN---QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH----NGAPAF 255 (429)
T ss_pred eEEEEEECCCCCC---ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc----cCceeE
Confidence 4689999987653 34455677789999999999999987643 4799999998876555444443 336899
Q ss_pred cCCCCEEEEEe-CCCe--EEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEEe-CCCeEEEEECCCC-ceeEEEeecC
Q 043172 360 SPDSSVIAFVG-NEGY--ILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSG-GDGQVYHWDLRTR-TCIHRAVDEG 434 (564)
Q Consensus 360 spdg~~la~~~-~dg~--I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s-~dg~V~lwD~~~~-~~~~~~~~~~ 434 (564)
+|+|+.|++++ .+|. |++||+.++.......+...+..++|+|+|+.|+.++ .+|...+|++... .....+ ...
T Consensus 256 SPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~ 334 (429)
T PRK01742 256 SPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGR 334 (429)
T ss_pred CCCCCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCC
Confidence 99999988865 5675 4555777776554434666788999999999877665 5677777776432 222222 222
Q ss_pred CcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEc-
Q 043172 435 CINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHI- 513 (564)
Q Consensus 435 ~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl- 513 (564)
. ..++|+|+|++|++++.++ +.+||+.++ ........ .....+.|+|+|++|++++. ++.+.+|.+
T Consensus 335 ~---~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g-----~~~~lt~~--~~~~~~~~sPdG~~i~~~s~--~g~~~~l~~~ 401 (429)
T PRK01742 335 G---YSAQISADGKTLVMINGDN-VVKQDLTSG-----STEVLSST--FLDESPSISPNGIMIIYSST--QGLGKVLQLV 401 (429)
T ss_pred C---CCccCCCCCCEEEEEcCCC-EEEEECCCC-----CeEEecCC--CCCCCceECCCCCEEEEEEc--CCCceEEEEE
Confidence 1 3578999999998887765 556998775 22211111 12356889999999999987 777777775
Q ss_pred -CCCceeccCCCCCCCCCCcEEEEEeCC
Q 043172 514 -PSYNVFSNWPPANRNLQYPRCLDFSPG 540 (564)
Q Consensus 514 -~s~~~~~~~~~~~~~~~~V~~l~fspd 540 (564)
.++.....++. +.+.+..++|||-
T Consensus 402 ~~~G~~~~~l~~---~~g~~~~p~wsp~ 426 (429)
T PRK01742 402 SADGRFKARLPG---SDGQVKFPAWSPY 426 (429)
T ss_pred ECCCCceEEccC---CCCCCCCcccCCC
Confidence 34666655543 3466888999984
No 184
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.76 E-value=2.5e-16 Score=146.51 Aligned_cols=285 Identities=14% Similarity=0.166 Sum_probs=200.4
Q ss_pred CCeeEEEEcC--C-CCEEEEEeC----CCcEEEEEecCCCCceeEEE-EeCCcCeEEEEEeeCCC-----EEEEEeCCCe
Q 043172 263 GPINSVQFHR--N-AQLLLVAGL----DRRLRFFQIDGKRNTKIQSI-FLEDCPVRKASFLPDGS-----QAIIAGRRKF 329 (564)
Q Consensus 263 ~~V~~l~fsp--d-g~~l~s~s~----dg~I~lwd~~~~~~~~~~~~-~~~~~~I~~l~fspdg~-----~l~s~~~dg~ 329 (564)
-+++++.|+. + .-+|+.|+. .+.|.|-.++...+..+... ..|..|++.+.|.|+.. .|+++ +.+
T Consensus 45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~ 122 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS--SDF 122 (364)
T ss_pred CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcc--cCe
Confidence 5788999984 2 347888875 57788888765444333222 35888999999999763 44443 357
Q ss_pred EEEEECCC--Cceeeeccc----cccCCcceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcE---E-EEeeecCcEEEE
Q 043172 330 FYSLDLVK--AKADKIGPL----VGREEKSLEFFEVSP-DSSVIAFVGNEGYILLVSSKTKEL---I-GTLKMNGTVRSL 398 (564)
Q Consensus 330 i~iwdl~~--~~~~~~~~~----~~~~~~~v~~~~~sp-dg~~la~~~~dg~I~lwd~~t~~~---~-~~~~~~~~V~~l 398 (564)
+++|.+.. ........+ ..+...++++|.|+. +.++|.+++-|-+..|||+.++.. . +.+.|...|.++
T Consensus 123 LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DI 202 (364)
T KOG0290|consen 123 LRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDI 202 (364)
T ss_pred EEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEE
Confidence 99999873 332211111 222335789999987 678999999999999999998743 2 223399999999
Q ss_pred EEecCC-CEEEEEeCCCeEEEEECCCCceeEEEe-ecC-CcceEEEEECCCC-CEEEEEeC-CCcEEEEeCCcccCCcce
Q 043172 399 AFADDG-KQLLSSGGDGQVYHWDLRTRTCIHRAV-DEG-CINGTALCTSPDG-TFFAAGSD-SGIVNVYNRQEFLGGKRK 473 (564)
Q Consensus 399 ~~spdg-~~l~s~s~dg~V~lwD~~~~~~~~~~~-~~~-~~~i~~l~~sp~g-~~lasgs~-dg~V~iwd~~~~~~~~~~ 473 (564)
+|...+ ..|+++|.||.|++||++....-..+. ... ..+...++|++.. +++|+-.. ...|.|.|++.. ..
T Consensus 203 af~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P----~t 278 (364)
T KOG0290|consen 203 AFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVP----CT 278 (364)
T ss_pred EeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCC----Cc
Confidence 999855 578899999999999999765433333 222 4466788888754 57776544 457999999975 48
Q ss_pred eeEEccccccceeEEEEcCCC-cEEEEEecCCCCeEEEEEcCCCce-eccCCCC-CCCCCCcEEEEEeC-CCCEEEEEcC
Q 043172 474 PIKTIENLTTKVDFMKFNNDA-QILAICSTMKKNSLKLIHIPSYNV-FSNWPPA-NRNLQYPRCLDFSP-GGGFMAVGNA 549 (564)
Q Consensus 474 ~~~~~~~~~~~I~~l~fspdg-~~La~~s~~~d~~I~lwdl~s~~~-~~~~~~~-~~~~~~V~~l~fsp-dg~~Lasgs~ 549 (564)
|+..+.+|.+.|+.++|.|.. ..|++|+. |..+-|||+.+.-. ...-|.. -...+.|+.+.|+| .+.+++++.
T Consensus 279 pva~L~~H~a~VNgIaWaPhS~~hictaGD--D~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~- 355 (364)
T KOG0290|consen 279 PVARLRNHQASVNGIAWAPHSSSHICTAGD--DCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICF- 355 (364)
T ss_pred ceehhhcCcccccceEecCCCCceeeecCC--cceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEe-
Confidence 899999999999999999965 56777766 89999999975422 0000110 11336799999996 567787765
Q ss_pred CCeEEEE
Q 043172 550 AGKVFLY 556 (564)
Q Consensus 550 dG~V~lw 556 (564)
+.++.|.
T Consensus 356 ~kkleiL 362 (364)
T KOG0290|consen 356 GKKLEIL 362 (364)
T ss_pred cCeeeEE
Confidence 3445544
No 185
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.76 E-value=2.5e-15 Score=144.39 Aligned_cols=279 Identities=18% Similarity=0.181 Sum_probs=196.8
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCC--CeEEEEECCCCc
Q 043172 262 TGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRR--KFFYSLDLVKAK 339 (564)
Q Consensus 262 ~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~d--g~i~iwdl~~~~ 339 (564)
...+..+.|+.+...|..|+.|| .++|..+.. ............|.-+-|+. ..++..+.+ +.++++++..+.
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~--~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~ 79 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPF--EKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKT 79 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCch--HHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCc
Confidence 34678888999999999999888 678877632 22223333344566666764 466666543 458899888776
Q ss_pred eeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee----ecCcEEEEEEecCCCEEEEEe--CC
Q 043172 340 ADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK----MNGTVRSLAFADDGKQLLSSG--GD 413 (564)
Q Consensus 340 ~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~----~~~~V~~l~~spdg~~l~s~s--~d 413 (564)
...-..++ .+|.++.++. +.|+++-. ..|+|||+++++.++++. +...+.++++++.+.+|+.-+ ..
T Consensus 80 ~ICe~~fp----t~IL~VrmNr--~RLvV~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~ 152 (391)
T KOG2110|consen 80 TICEIFFP----TSILAVRMNR--KRLVVCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTS 152 (391)
T ss_pred eEEEEecC----CceEEEEEcc--ceEEEEEc-ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCC
Confidence 64432222 2577777764 45555544 459999999999999887 334566777777777887543 36
Q ss_pred CeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCc-EEEEeCCcccCCcceeeEEcccc--ccceeEEEE
Q 043172 414 GQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGI-VNVYNRQEFLGGKRKPIKTIENL--TTKVDFMKF 490 (564)
Q Consensus 414 g~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~-V~iwd~~~~~~~~~~~~~~~~~~--~~~I~~l~f 490 (564)
|.|++||+.+-+.+..+..| ...+.+++|+++|.+||++|..|+ |+||.+..+ ..++.|... ...|.+++|
T Consensus 153 GdV~l~d~~nl~~v~~I~aH-~~~lAalafs~~G~llATASeKGTVIRVf~v~~G-----~kl~eFRRG~~~~~IySL~F 226 (391)
T KOG2110|consen 153 GDVVLFDTINLQPVNTINAH-KGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG-----QKLYEFRRGTYPVSIYSLSF 226 (391)
T ss_pred ceEEEEEcccceeeeEEEec-CCceeEEEECCCCCEEEEeccCceEEEEEEcCCc-----cEeeeeeCCceeeEEEEEEE
Confidence 89999999999988888754 457999999999999999999986 789999887 777777533 356889999
Q ss_pred cCCCcEEEEEecCCCCeEEEEEcCCCceecc--------------------CCC--------------CCCCCCCc-EEE
Q 043172 491 NNDAQILAICSTMKKNSLKLIHIPSYNVFSN--------------------WPP--------------ANRNLQYP-RCL 535 (564)
Q Consensus 491 spdg~~La~~s~~~d~~I~lwdl~s~~~~~~--------------------~~~--------------~~~~~~~V-~~l 535 (564)
+|++++|++.|. .++|+||.+.....-.. +|. ...+.... ..+
T Consensus 227 s~ds~~L~~sS~--TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~ 304 (391)
T KOG2110|consen 227 SPDSQFLAASSN--TETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNIC 304 (391)
T ss_pred CCCCCeEEEecC--CCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceE
Confidence 999999999998 89999999854211000 000 00011111 233
Q ss_pred EEe--CCCCEEEEEcCCCeEEEEEcCC
Q 043172 536 DFS--PGGGFMAVGNAAGKVFLYKLNH 560 (564)
Q Consensus 536 ~fs--pdg~~Lasgs~dG~V~lw~l~~ 560 (564)
.++ +...++.+++.||.++.|.+.-
T Consensus 305 ~l~~~~~~~~v~vas~dG~~y~y~l~~ 331 (391)
T KOG2110|consen 305 SLSSIQKIPRVLVASYDGHLYSYRLPP 331 (391)
T ss_pred EeeccCCCCEEEEEEcCCeEEEEEcCC
Confidence 444 4667889999999999999864
No 186
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.75 E-value=1.3e-16 Score=148.21 Aligned_cols=255 Identities=14% Similarity=0.135 Sum_probs=185.6
Q ss_pred CCCCCCCeeEEEEcCCC-CEEEEEeCC-------CcEEEEEecCCCCc-------eeEEEE-eCCcCeEEEEEeeCCCEE
Q 043172 258 DESSTGPINSVQFHRNA-QLLLVAGLD-------RRLRFFQIDGKRNT-------KIQSIF-LEDCPVRKASFLPDGSQA 321 (564)
Q Consensus 258 ~~~h~~~V~~l~fspdg-~~l~s~s~d-------g~I~lwd~~~~~~~-------~~~~~~-~~~~~I~~l~fspdg~~l 321 (564)
...|.+.|..++-+|.. .+|+|+-.+ ..+.||.+....++ .+..+. .+-+.|.|+.|.|++..+
T Consensus 59 f~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~kl 138 (370)
T KOG1007|consen 59 FFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKL 138 (370)
T ss_pred hhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCee
Confidence 44578999999999954 455655331 24789998643222 233333 244589999999999999
Q ss_pred EEEeCCCeEEEEECCCCcee-eecccc--ccCCcceEEEEEcC--CCCEEEEEeCCCeEEEEECCCCcEEEEee--ecCc
Q 043172 322 IIAGRRKFFYSLDLVKAKAD-KIGPLV--GREEKSLEFFEVSP--DSSVIAFVGNEGYILLVSSKTKELIGTLK--MNGT 394 (564)
Q Consensus 322 ~s~~~dg~i~iwdl~~~~~~-~~~~~~--~~~~~~v~~~~~sp--dg~~la~~~~dg~I~lwd~~t~~~~~~~~--~~~~ 394 (564)
++-. +..|.+|++..+... ...... ......+++-+|+| +|+.+++. .++++..||+++......+. |...
T Consensus 139 asm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~ 216 (370)
T KOG1007|consen 139 ASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQR 216 (370)
T ss_pred EEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcce
Confidence 8766 788999999887542 111111 11123577889999 67887776 57999999999998888777 8889
Q ss_pred EEEEEEecCC-CEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCC-CCEEEEEeCCCcEEEEeCCcccC---
Q 043172 395 VRSLAFADDG-KQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPD-GTFFAAGSDSGIVNVYNRQEFLG--- 469 (564)
Q Consensus 395 V~~l~~spdg-~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~-g~~lasgs~dg~V~iwd~~~~~~--- 469 (564)
|.++.|+|+. .+|++|+.||.|++||.+..+....-...|...+.++.|+|. .++|++|+.|..|.+|....-..
T Consensus 217 vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~q 296 (370)
T KOG1007|consen 217 VRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQ 296 (370)
T ss_pred eeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccc
Confidence 9999999975 468889999999999999765443334456668999999986 46888999999999998754310
Q ss_pred ----------------C-----cceeeEEccccccceeEEEEcCCCcEE-EEEecCCCCeEEEEEcCCC
Q 043172 470 ----------------G-----KRKPIKTIENLTTKVDFMKFNNDAQIL-AICSTMKKNSLKLIHIPSY 516 (564)
Q Consensus 470 ----------------~-----~~~~~~~~~~~~~~I~~l~fspdg~~L-a~~s~~~d~~I~lwdl~s~ 516 (564)
. ....+.++..|...|++++||.-..++ |+-|. ||.+.|=.++..
T Consensus 297 i~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSY--DGRviIs~V~r~ 363 (370)
T KOG1007|consen 297 IEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSY--DGRVIISSVPRF 363 (370)
T ss_pred cccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEecc--CceEEeecCChh
Confidence 0 112345677899999999999866554 55566 999988777643
No 187
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.75 E-value=2e-16 Score=149.48 Aligned_cols=280 Identities=17% Similarity=0.130 Sum_probs=194.3
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEE-eCCCeEEEEECCCCceeeecc
Q 043172 267 SVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIA-GRRKFFYSLDLVKAKADKIGP 345 (564)
Q Consensus 267 ~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~-~~dg~i~iwdl~~~~~~~~~~ 345 (564)
-++|||+|+++|+++.- .+.|=|..+ .+.++ +...-..|..+.|..+.-+++.+ ..++.|.+|++....... .
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~t--lq~~q-lf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~c--k 86 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSET--LQLHQ-LFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYC--K 86 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccch--hhHHH-HHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEE--E
Confidence 46799999999999754 565655442 21211 11123467788999888776655 578899999998776532 2
Q ss_pred ccccCCcceEEEEEcCCCCEEEE-EeCCCeEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEEeC------------
Q 043172 346 LVGREEKSLEFFEVSPDSSVIAF-VGNEGYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSGG------------ 412 (564)
Q Consensus 346 ~~~~~~~~v~~~~~spdg~~la~-~~~dg~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s~------------ 412 (564)
+.... .++..++|||+|+.|+. ...+-.|.+|.+.+......-.....+..++|+|+|++.+.+++
T Consensus 87 Ideg~-agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c 165 (447)
T KOG4497|consen 87 IDEGQ-AGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSC 165 (447)
T ss_pred eccCC-CcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhh
Confidence 33333 36889999999966554 55688999999988776554334556789999999998887762
Q ss_pred ------------------------CCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCccc
Q 043172 413 ------------------------DGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFL 468 (564)
Q Consensus 413 ------------------------dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~ 468 (564)
+..+.+||---.-.+. .-+.+.++..+.|+|.+++|++|+.|+.++|-+--++.
T Consensus 166 ~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~--aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk 243 (447)
T KOG4497|consen 166 KAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVY--AYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWK 243 (447)
T ss_pred HHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheee--eeeeccceeEEEeccccceEEeeccchhhhhhceeeee
Confidence 2234455432221111 12334578899999999999999999998886643320
Q ss_pred C-------------------------------------------------------------CcceeeEEccccccceeE
Q 043172 469 G-------------------------------------------------------------GKRKPIKTIENLTTKVDF 487 (564)
Q Consensus 469 ~-------------------------------------------------------------~~~~~~~~~~~~~~~I~~ 487 (564)
. ...+|...+.+....+.-
T Consensus 244 ~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~ 323 (447)
T KOG4497|consen 244 PFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGK 323 (447)
T ss_pred ehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccce
Confidence 0 001111112233446777
Q ss_pred EEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q 043172 488 MKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLN 559 (564)
Q Consensus 488 l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~ 559 (564)
++||+|..++++-...-.+.+.+||+...++...+.. ..+|.+..|.|....|+++....++++|...
T Consensus 324 lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQ----k~piraf~WdP~~prL~vctg~srLY~W~ps 391 (447)
T KOG4497|consen 324 LAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQ----KHPIRAFEWDPGRPRLVVCTGKSRLYFWAPS 391 (447)
T ss_pred eeecCCceEEeeecCCCCceEEEEechhhhhhhhhhh----ccceeEEEeCCCCceEEEEcCCceEEEEcCC
Confidence 9999999999998776678999999998776554322 2679999999999999988888889999764
No 188
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.74 E-value=8.3e-16 Score=166.57 Aligned_cols=294 Identities=12% Similarity=0.084 Sum_probs=205.6
Q ss_pred CCCCCCCCeeEEEEcCCC-CEEEEEeCCCcEEEEEecC-----CCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeE
Q 043172 257 ADESSTGPINSVQFHRNA-QLLLVAGLDRRLRFFQIDG-----KRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFF 330 (564)
Q Consensus 257 ~~~~h~~~V~~l~fspdg-~~l~s~s~dg~I~lwd~~~-----~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i 330 (564)
..+-|...|..++.++.. .+++|||.||+|++|+... .......++.....++.++.+.+.++.+|+++.||.|
T Consensus 1043 hL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v 1122 (1431)
T KOG1240|consen 1043 HLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSV 1122 (1431)
T ss_pred hhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeE
Confidence 355688888899888754 9999999999999999852 2223344455567889999999999999999999999
Q ss_pred EEEECCCCceeee-----ccccccCCc-ceEEEEEcC--CCCEEEEEeCCCeEEEEECCCCcEEEEee---ecCcEEEEE
Q 043172 331 YSLDLVKAKADKI-----GPLVGREEK-SLEFFEVSP--DSSVIAFVGNEGYILLVSSKTKELIGTLK---MNGTVRSLA 399 (564)
Q Consensus 331 ~iwdl~~~~~~~~-----~~~~~~~~~-~v~~~~~sp--dg~~la~~~~dg~I~lwd~~t~~~~~~~~---~~~~V~~l~ 399 (564)
.+.++......+. .....+..+ .+..-+|.. ....++.+...+.|..||+++......++ ..|.|++++
T Consensus 1123 ~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~ 1202 (1431)
T KOG1240|consen 1123 RVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIV 1202 (1431)
T ss_pred EEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEE
Confidence 9999876321111 111111112 233333332 22377888888999999999887777666 458899999
Q ss_pred EecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCC---CEEEEEe--CCCcEEEEeCCcccCCccee
Q 043172 400 FADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDG---TFFAAGS--DSGIVNVYNRQEFLGGKRKP 474 (564)
Q Consensus 400 ~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g---~~lasgs--~dg~V~iwd~~~~~~~~~~~ 474 (564)
.+|.++++++|+..|.+.+||++-+..+..|......++..++.+|-. .+.++++ ..+.|.+|++.++. .
T Consensus 1203 idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~-----~ 1277 (1431)
T KOG1240|consen 1203 IDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL-----R 1277 (1431)
T ss_pred ecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc-----c
Confidence 999999999999999999999999999999988777788888877643 4555544 46789999998862 1
Q ss_pred eEEcc-------------------ccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCcee----------------
Q 043172 475 IKTIE-------------------NLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVF---------------- 519 (564)
Q Consensus 475 ~~~~~-------------------~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~---------------- 519 (564)
..++. .+.-......+..-+.++.+|+. |..||.||.......
T Consensus 1278 ~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggs--d~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~ 1355 (1431)
T KOG1240|consen 1278 QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGS--DMKIRKWDPTRPEISSYAVPGPSTSYSTNSE 1355 (1431)
T ss_pred eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCC--ccceeeccCCCcccccccccCccccccccch
Confidence 11111 11112223344444567777777 899999997532111
Q ss_pred -------------cc--------CC----------------CCCCCCCCcEEEEEeCC-CCEEEEEcCCCeEEEEE
Q 043172 520 -------------SN--------WP----------------PANRNLQYPRCLDFSPG-GGFMAVGNAAGKVFLYK 557 (564)
Q Consensus 520 -------------~~--------~~----------------~~~~~~~~V~~l~fspd-g~~Lasgs~dG~V~lw~ 557 (564)
.. -+ ....|...|+++++... -.+|++++.||.|.||.
T Consensus 1356 s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1356 SYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred hccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 00 00 01135567888877643 35889999999999994
No 189
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.2e-15 Score=146.00 Aligned_cols=291 Identities=15% Similarity=0.182 Sum_probs=198.3
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCC-CEEEEEeCCCeEEEEECCCC-
Q 043172 261 STGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDG-SQAIIAGRRKFFYSLDLVKA- 338 (564)
Q Consensus 261 h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg-~~l~s~~~dg~i~iwdl~~~- 338 (564)
.+..+..++||+.-..+|++..|-+|++|+-.......+++. ....|+|++|-|.+ ..|++|++. -|.+|.....
T Consensus 97 s~~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~--sQrnvtclawRPlsaselavgCr~-gIciW~~s~tl 173 (445)
T KOG2139|consen 97 SEIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSV--SQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTL 173 (445)
T ss_pred hhcceeeEeechhhhhhhhhccCcEEEEeccCCCCCceecch--hhcceeEEEeccCCcceeeeeecc-eeEEEEcCccc
Confidence 445789999999888899999999999998765333333322 34579999999954 556666654 5999976432
Q ss_pred ---c--------eeeeccccccCCcceEEEEEcCCCCEEEEEeC-CCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCC
Q 043172 339 ---K--------ADKIGPLVGREEKSLEFFEVSPDSSVIAFVGN-EGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGK 405 (564)
Q Consensus 339 ---~--------~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~-dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~ 405 (564)
. ..++..-.+| .+|+++.|.+||..+++++. +..|.|||..+++.+.... ..+.++-+.|+|||.
T Consensus 174 n~~r~~~~~s~~~~qvl~~pgh--~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd 251 (445)
T KOG2139|consen 174 NANRNIRMMSTHHLQVLQDPGH--NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGD 251 (445)
T ss_pred ccccccccccccchhheeCCCC--ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCC
Confidence 1 1112223344 47999999999999999875 5789999999998876663 678899999999999
Q ss_pred EEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCccc----CC------cceee
Q 043172 406 QLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFL----GG------KRKPI 475 (564)
Q Consensus 406 ~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~----~~------~~~~~ 475 (564)
+|++++-|+..++|.....-...++....+ .+...+|+|.|++|...+. |.-.+|.+.... .. ...++
T Consensus 252 ~lfaAt~davfrlw~e~q~wt~erw~lgsg-rvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lli 329 (445)
T KOG2139|consen 252 VLFAATCDAVFRLWQENQSWTKERWILGSG-RVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLI 329 (445)
T ss_pred EEEEecccceeeeehhcccceecceeccCC-ceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeee
Confidence 999999999999997654433334443333 7899999999997665443 233455543220 00 00111
Q ss_pred EEcc-----c----cccceeEEEEcCCCcEEEEEecCCC------CeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeC-
Q 043172 476 KTIE-----N----LTTKVDFMKFNNDAQILAICSTMKK------NSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSP- 539 (564)
Q Consensus 476 ~~~~-----~----~~~~I~~l~fspdg~~La~~s~~~d------~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fsp- 539 (564)
..+. . ..+.+.+++|.|.|.+||+.-..++ ..|.+|+....-.+...+.......+...++|+|
T Consensus 330 aDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl 409 (445)
T KOG2139|consen 330 ADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPL 409 (445)
T ss_pred ccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeec
Confidence 1111 1 2467889999999999998776432 3456677655443332222211112356778877
Q ss_pred --CCCEEEEEcCCCeEEEEEc
Q 043172 540 --GGGFMAVGNAAGKVFLYKL 558 (564)
Q Consensus 540 --dg~~Lasgs~dG~V~lw~l 558 (564)
+|.+|.++=..|.+.-|.+
T Consensus 410 ~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 410 KNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred ccCCcEEEEEeccCceEeeee
Confidence 6788888888999988876
No 190
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.73 E-value=4.3e-16 Score=164.25 Aligned_cols=249 Identities=12% Similarity=0.128 Sum_probs=182.7
Q ss_pred CCCCeeEEEEcC-CCCEEEEEeCCCcEEEEEecCCCCce----eEEEEeCCcCeEEEEEeeCC--CEEEEEeCCCeEEEE
Q 043172 261 STGPINSVQFHR-NAQLLLVAGLDRRLRFFQIDGKRNTK----IQSIFLEDCPVRKASFLPDG--SQAIIAGRRKFFYSL 333 (564)
Q Consensus 261 h~~~V~~l~fsp-dg~~l~s~s~dg~I~lwd~~~~~~~~----~~~~~~~~~~I~~l~fspdg--~~l~s~~~dg~i~iw 333 (564)
...+|+|+.|+| +..+|+.|..+|.|.+||+.....+. ......|..++..+.|..+- ..+++++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 467899999999 56678888889999999997654422 22234588899999998643 559999999999999
Q ss_pred ECCCCceee-e--ccc------cccCCcceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCcE--------EEEee-ecCc
Q 043172 334 DLVKAKADK-I--GPL------VGREEKSLEFFEVSPD-SSVIAFVGNEGYILLVSSKTKEL--------IGTLK-MNGT 394 (564)
Q Consensus 334 dl~~~~~~~-~--~~~------~~~~~~~v~~~~~spd-g~~la~~~~dg~I~lwd~~t~~~--------~~~~~-~~~~ 394 (564)
++..-.... . ... .......+++++|.+. -..+++|+..|.|.--+-...+. +..+. |.++
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~ 400 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP 400 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence 876432210 0 000 1112245788999884 56788888999988744332211 21222 8899
Q ss_pred EEEEEEecCCCEEEEEeCCCeEEEEECC-CCceeEEEeecCCcceEEEEECCCCC-EEEEEeCCCcEEEEeCCcccCCcc
Q 043172 395 VRSLAFADDGKQLLSSGGDGQVYHWDLR-TRTCIHRAVDEGCINGTALCTSPDGT-FFAAGSDSGIVNVYNRQEFLGGKR 472 (564)
Q Consensus 395 V~~l~~spdg~~l~s~s~dg~V~lwD~~-~~~~~~~~~~~~~~~i~~l~~sp~g~-~lasgs~dg~V~iwd~~~~~~~~~ 472 (564)
|+++.++|-+..++..+.|.+|+||... ...++..+. .....+++++|||... .|+++..+|.|.|||+.. ...
T Consensus 401 v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~-~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~---~~~ 476 (555)
T KOG1587|consen 401 VYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLD-SSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQ---DDE 476 (555)
T ss_pred eEeeecCCCccceeeeeccceeEeccccCCCCcchhhh-hccceeeeeEEcCcCceEEEEEcCCCceehhhhhc---ccc
Confidence 9999999976555555559999999988 445554444 3344589999999864 788888999999999986 345
Q ss_pred eeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCC
Q 043172 473 KPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPS 515 (564)
Q Consensus 473 ~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s 515 (564)
.|+.+........+.+.|++.|++|++|.. .|.+++|++..
T Consensus 477 ~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~--~G~~~~~~l~~ 517 (555)
T KOG1587|consen 477 EPVLSQKVCSPALTRVRWSPNGKLLAVGDA--NGTTHILKLSE 517 (555)
T ss_pred CCcccccccccccceeecCCCCcEEEEecC--CCcEEEEEcCc
Confidence 677777666777888899999999999998 89999999964
No 191
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.73 E-value=4.1e-16 Score=150.60 Aligned_cols=238 Identities=13% Similarity=0.144 Sum_probs=175.4
Q ss_pred hhcccCCCeEEc------CCCccCCCeeeeeee-ecccCCCCCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEEecCC---
Q 043172 226 DILRTDEDLVVK------SSAKLSPGLLEYSRL-IDANADESSTGPINSVQFHR-NAQLLLVAGLDRRLRFFQIDGK--- 294 (564)
Q Consensus 226 ~ll~~~~~~~~~------~~~~l~~~~~d~~rl-~~~~~~~~h~~~V~~l~fsp-dg~~l~s~s~dg~I~lwd~~~~--- 294 (564)
.++.-+..|++- ++.-+....-.+-|+ .+.....+|+++|..++|+| +...||+||.|.+|.||++...
T Consensus 38 ~fcavNPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~ 117 (472)
T KOG0303|consen 38 SFCAVNPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLT 117 (472)
T ss_pred cccccCCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccc
Confidence 355556666541 223333333333333 33456789999999999999 6779999999999999998532
Q ss_pred --CCceeEEEEeCCcCeEEEEEeeC-CCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeC
Q 043172 295 --RNTKIQSIFLEDCPVRKASFLPD-GSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGN 371 (564)
Q Consensus 295 --~~~~~~~~~~~~~~I~~l~fspd-g~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~ 371 (564)
...++..+.+|...|-.++|+|. .+.|+++|.|..|.+|++.+|..... +. |.. .|.++.|+.+|.+|++++.
T Consensus 118 ~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~--l~-hpd-~i~S~sfn~dGs~l~Ttck 193 (472)
T KOG0303|consen 118 RDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALIT--LD-HPD-MVYSMSFNRDGSLLCTTCK 193 (472)
T ss_pred cCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeee--cC-CCC-eEEEEEeccCCceeeeecc
Confidence 12456778999999999999995 46788899999999999999986432 33 544 7999999999999999999
Q ss_pred CCeEEEEECCCCcEEEEee-ecC-cEEEEEEecCCCEEEEEe---CCCeEEEEECCCCce-eEEEeecCCcceEEEEECC
Q 043172 372 EGYILLVSSKTKELIGTLK-MNG-TVRSLAFADDGKQLLSSG---GDGQVYHWDLRTRTC-IHRAVDEGCINGTALCTSP 445 (564)
Q Consensus 372 dg~I~lwd~~t~~~~~~~~-~~~-~V~~l~~spdg~~l~s~s---~dg~V~lwD~~~~~~-~~~~~~~~~~~i~~l~~sp 445 (564)
|..|+|||.++++.+..-. |.+ ....+.|..+|.++.+|- .+.++-+||...-.. +.......+.+|.---|.+
T Consensus 194 DKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~ 273 (472)
T KOG0303|consen 194 DKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDP 273 (472)
T ss_pred cceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecC
Confidence 9999999999999998775 654 455666888888554442 367899999876332 2222234444566666788
Q ss_pred CCCEEE-EEeCCCcEEEEeCCcc
Q 043172 446 DGTFFA-AGSDSGIVNVYNRQEF 467 (564)
Q Consensus 446 ~g~~la-sgs~dg~V~iwd~~~~ 467 (564)
+...+. +|-.|+.|+.|.+...
T Consensus 274 dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 274 DTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred CCCEEEEEecCCcceEEEEecCC
Confidence 877655 5567999999999874
No 192
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.72 E-value=4.2e-16 Score=147.00 Aligned_cols=230 Identities=12% Similarity=0.130 Sum_probs=178.0
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCC-CceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEEC-CCCc
Q 043172 262 TGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKR-NTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDL-VKAK 339 (564)
Q Consensus 262 ~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~-~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl-~~~~ 339 (564)
..+|+|.+|+++++.+|++-....|.||...+.. ....+++..|...|+.+.|+|..+.|++|+.|+.-++|.. ..+.
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~ 89 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT 89 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence 4689999999999999999999999999998776 6788889999999999999999999999999999999999 5555
Q ss_pred eeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE---ee--ecCcEEEEEEecCCCEEEEEeCCC
Q 043172 340 ADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGT---LK--MNGTVRSLAFADDGKQLLSSGGDG 414 (564)
Q Consensus 340 ~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~---~~--~~~~V~~l~~spdg~~l~s~s~dg 414 (564)
..+...+..+. +.++++.|+|.++.||+|+....|.||-++...--.. ++ +...|++++|+|++-+|++|+.|+
T Consensus 90 WkptlvLlRiN-rAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~ 168 (361)
T KOG1523|consen 90 WKPTLVLLRIN-RAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDG 168 (361)
T ss_pred eccceeEEEec-cceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCc
Confidence 55544444444 4799999999999999999999999988765432211 22 567899999999999999999999
Q ss_pred eEEEEECCC------------------CceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeE
Q 043172 415 QVYHWDLRT------------------RTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIK 476 (564)
Q Consensus 415 ~V~lwD~~~------------------~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~ 476 (564)
.+++|..-- |..+..+. ..+..+..+.|+|.|..|+-.+.|..|.+-|.... . ..+.
T Consensus 169 k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~-~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p---~-~~v~ 243 (361)
T KOG1523|consen 169 KCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS-SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP---S-ERVQ 243 (361)
T ss_pred ceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc-cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCC---c-hhcc
Confidence 999987521 11122222 23446889999999999999999999999998754 1 1222
Q ss_pred EccccccceeEEEEcCCCcEE
Q 043172 477 TIENLTTKVDFMKFNNDAQIL 497 (564)
Q Consensus 477 ~~~~~~~~I~~l~fspdg~~L 497 (564)
++....-+..++.|-.+.+.+
T Consensus 244 ~~~~~~lP~ls~~~ise~~vv 264 (361)
T KOG1523|consen 244 SVATAQLPLLSVSWISENSVV 264 (361)
T ss_pred chhhccCCceeeEeecCCcee
Confidence 222223556666665544433
No 193
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=8.4e-17 Score=161.95 Aligned_cols=246 Identities=18% Similarity=0.200 Sum_probs=183.0
Q ss_pred EEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCC------CceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCe
Q 043172 301 SIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVK------AKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGY 374 (564)
Q Consensus 301 ~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~------~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~ 374 (564)
++..|...|+.++|.|....|++++.++.+.+|++.. ....++.++.+|.. +|.|+++++++.++++||.||+
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~g-PVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEG-PVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccC-ceEEEEecCCceEEEeeccCce
Confidence 5566888999999999999999999999999999932 34556777888886 8999999999999999999999
Q ss_pred EEEEECCCC----------cEEEEee-ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEee--cCCcceEEE
Q 043172 375 ILLVSSKTK----------ELIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVD--EGCINGTAL 441 (564)
Q Consensus 375 I~lwd~~t~----------~~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~--~~~~~i~~l 441 (564)
|+.|++... .....+. |.+.|+.+++++....|++++.||+|++|+...... ..|.. .+.. .+++
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~-Plsv 445 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGY-PLSV 445 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCC-cceE
Confidence 999976422 1122333 888999999999988999999999999999876655 22322 2222 2455
Q ss_pred EECCCC-CEEEEEeCCCcEEEEeCCcccCCcceeeEEccc-------cccceeEEEEcCCCcEEEEEecCCCCeEEEEEc
Q 043172 442 CTSPDG-TFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIEN-------LTTKVDFMKFNNDAQILAICSTMKKNSLKLIHI 513 (564)
Q Consensus 442 ~~sp~g-~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~-------~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl 513 (564)
.+-... .+.++...-+.-.++++... ..+..+.. ....+..+.++|.+.+.+++.. ++.|++++.
T Consensus 446 d~~ss~~a~~~~s~~~~~~~~~~~ev~-----s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~he--d~~Ir~~dn 518 (577)
T KOG0642|consen 446 DRTSSRPAHSLASFRFGYTSIDDMEVV-----SDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHE--DRSIRFFDN 518 (577)
T ss_pred eeccchhHhhhhhcccccccchhhhhh-----hheeeccccCCCcccccCccceEEecCCCCeeEeccc--CCceecccc
Confidence 543322 12222223333334444433 22222221 1245778899999988888887 999999999
Q ss_pred CCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q 043172 514 PSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLN 559 (564)
Q Consensus 514 ~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~ 559 (564)
.++..+... ..|...++++++.|+|.+|++|+.||.|++|++.
T Consensus 519 ~~~~~l~s~---~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld 561 (577)
T KOG0642|consen 519 KTGKILHSM---VAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLD 561 (577)
T ss_pred cccccchhe---eeccceecceeecCCCceEEeecCCceeehhhcc
Confidence 999887633 3455789999999999999999999999999984
No 194
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=3.7e-15 Score=157.49 Aligned_cols=281 Identities=13% Similarity=0.163 Sum_probs=207.4
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCC---CEEEEEeCCCeEEEEECCCCceeeec
Q 043172 268 VQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDG---SQAIIAGRRKFFYSLDLVKAKADKIG 344 (564)
Q Consensus 268 l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg---~~l~s~~~dg~i~iwdl~~~~~~~~~ 344 (564)
-.|++|+++++... ...|.||... +..++..+..|..++..+.+.|.. .++++++.+|.|++||...+...+..
T Consensus 22 avfSnD~k~l~~~~-~~~V~VyS~~--Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~ 98 (792)
T KOG1963|consen 22 AVFSNDAKFLFLCT-GNFVKVYSTA--TGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTF 98 (792)
T ss_pred cccccCCcEEEEee-CCEEEEEecc--hHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEE
Confidence 45899999888775 6689999877 556888999999999999998754 46778999999999998887654432
Q ss_pred cccccCC-------------------------------------------------------cceEEEEEcCCCCEEEEE
Q 043172 345 PLVGREE-------------------------------------------------------KSLEFFEVSPDSSVIAFV 369 (564)
Q Consensus 345 ~~~~~~~-------------------------------------------------------~~v~~~~~spdg~~la~~ 369 (564)
....+.. ..-.++.+++.|.+.+.+
T Consensus 99 ~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~ 178 (792)
T KOG1963|consen 99 DNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIV 178 (792)
T ss_pred ecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEE
Confidence 2110000 001233444444444433
Q ss_pred eCCCeEEEEECCCCcEEEEe-----eecCcEEEEEEecCCCEEEEEeCCCeEEEEECCC---CceeEEEeecCCcceEEE
Q 043172 370 GNEGYILLVSSKTKELIGTL-----KMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRT---RTCIHRAVDEGCINGTAL 441 (564)
Q Consensus 370 ~~dg~I~lwd~~t~~~~~~~-----~~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~---~~~~~~~~~~~~~~i~~l 441 (564)
.+..+.+|...++...... .|.-.+++.+++|++++++++..||.|.+|.--. .....+..+-|...++++
T Consensus 179 -~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L 257 (792)
T KOG1963|consen 179 -HMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSL 257 (792)
T ss_pred -EeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEeccccccee
Confidence 3456778887765422111 1556689999999999999999999999996432 112222223344478999
Q ss_pred EECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceecc
Q 043172 442 CTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSN 521 (564)
Q Consensus 442 ~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~ 521 (564)
+|+++|.+|++|+..|.+.+|.+.++ + -.-+....++|..+.+|||+.+.+.... |+.|.+...++......
T Consensus 258 ~fS~~G~~LlSGG~E~VLv~Wq~~T~-----~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~--DNqI~li~~~dl~~k~t 329 (792)
T KOG1963|consen 258 SFSSDGAYLLSGGREGVLVLWQLETG-----K-KQFLPRLGSPILHIVVSPDSDLYSLVLE--DNQIHLIKASDLEIKST 329 (792)
T ss_pred EEecCCceEeecccceEEEEEeecCC-----C-cccccccCCeeEEEEEcCCCCeEEEEec--CceEEEEeccchhhhhh
Confidence 99999999999999999999999986 4 3445667899999999999999999888 99999999987665544
Q ss_pred CCCCCC--------CCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCC
Q 043172 522 WPPANR--------NLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNH 560 (564)
Q Consensus 522 ~~~~~~--------~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~ 560 (564)
+..... +.+..+.++++|..+.++..+..|.|.+|++-+
T Consensus 330 Isgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~t 376 (792)
T KOG1963|consen 330 ISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYT 376 (792)
T ss_pred ccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccc
Confidence 433322 356688999999878888899999999999854
No 195
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.71 E-value=1.4e-17 Score=173.53 Aligned_cols=285 Identities=12% Similarity=0.152 Sum_probs=222.2
Q ss_pred eeeecccCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCe
Q 043172 250 SRLIDANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKF 329 (564)
Q Consensus 250 ~rl~~~~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~ 329 (564)
++.+.+....+|.+.|+|+.|...|.++++|+.|..++||... +..++.+..+|.+.|+.++.+.+...+++++.|..
T Consensus 178 qkmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~e--t~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~v 255 (1113)
T KOG0644|consen 178 QKMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSME--TARCLASCRGHSGDITDLAVSSNNTMIAAASNDKV 255 (1113)
T ss_pred HHHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeecc--chhhhccCCCCccccchhccchhhhhhhhcccCce
Confidence 4556666677899999999999999999999999999999866 56688999999999999999999999999999999
Q ss_pred EEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE-----eeecCcEEEEEEecCC
Q 043172 330 FYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGT-----LKMNGTVRSLAFADDG 404 (564)
Q Consensus 330 i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~-----~~~~~~V~~l~~spdg 404 (564)
|++|.+..+..+ .-+.+|.+ .|++++|+|-. +.+.||++++||.+-.-.+.. +.....+.++.|-..+
T Consensus 256 IrvWrl~~~~pv--svLrghtg-avtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~ 328 (1113)
T KOG0644|consen 256 IRVWRLPDGAPV--SVLRGHTG-AVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNG 328 (1113)
T ss_pred EEEEecCCCchH--HHHhcccc-ceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccc
Confidence 999999999864 44778776 89999999954 677899999999882111111 1123457778888888
Q ss_pred CEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCC-CCEEEEEeCCCcEEEEeCCcccCCcceeeEEcccccc
Q 043172 405 KQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPD-GTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTT 483 (564)
Q Consensus 405 ~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~-g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~ 483 (564)
..+++++.++.-..|.+..-.+.. ....-+..+.+ ..+.+++-.+-.+.+|++..+ ..++.+.+|..
T Consensus 329 ~~f~Tgs~d~ea~n~e~~~l~~~~-------~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g-----~l~H~l~ghsd 396 (1113)
T KOG0644|consen 329 DRFLTGSRDGEARNHEFEQLAWRS-------NLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG-----QLLHNLMGHSD 396 (1113)
T ss_pred cccccccCCcccccchhhHhhhhc-------cceEEEeccccccccceeeeeeeEeeeeecccc-----hhhhhhccccc
Confidence 889999999988888764321110 00001111111 246667777888999999998 88999999999
Q ss_pred ceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q 043172 484 KVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLN 559 (564)
Q Consensus 484 ~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~ 559 (564)
.+..+.++|-...++...+. ||...|||+-.+..++.+... | +.+....||++|..++....-|.++|....
T Consensus 397 ~~yvLd~Hpfn~ri~msag~-dgst~iwdi~eg~pik~y~~g--h-~kl~d~kFSqdgts~~lsd~hgql~i~g~g 468 (1113)
T KOG0644|consen 397 EVYVLDVHPFNPRIAMSAGY-DGSTIIWDIWEGIPIKHYFIG--H-GKLVDGKFSQDGTSIALSDDHGQLYILGTG 468 (1113)
T ss_pred ceeeeeecCCCcHhhhhccC-CCceEeeecccCCcceeeecc--c-ceeeccccCCCCceEecCCCCCceEEeccC
Confidence 99999999977666544332 999999999988887765522 3 567777999999999998888999988654
No 196
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=2.9e-15 Score=150.94 Aligned_cols=281 Identities=15% Similarity=0.204 Sum_probs=203.5
Q ss_pred CCCCCeeEEEEcCCCCEEE-EEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCC
Q 043172 260 SSTGPINSVQFHRNAQLLL-VAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKA 338 (564)
Q Consensus 260 ~h~~~V~~l~fspdg~~l~-s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~ 338 (564)
.|...-+.|..+|||+|++ ||.+--.|++||+..-.... .-+.....|.-.-++-|-..++.-..|++|-+-..- |
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKF--ERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~-G 125 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKF--ERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY-G 125 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeee--eecccccceeEEEeccchhhheEeecCceeeehhhc-C
Confidence 3777889999999999865 55567799999987432111 112223445555555555566666677777654322 2
Q ss_pred ceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeee-cCcEEEEEEecCCCEEEEEeCCCeEE
Q 043172 339 KADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLKM-NGTVRSLAFADDGKQLLSSGGDGQVY 417 (564)
Q Consensus 339 ~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~~-~~~V~~l~~spdg~~l~s~s~dg~V~ 417 (564)
.... ..++. .-..++++.-..-|++++....|+-+++..|.++..+.. .+.++++..++-..+|++|+.+|.|-
T Consensus 126 ~hy~-~RIP~----~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VE 200 (703)
T KOG2321|consen 126 RHYR-TRIPK----FGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVE 200 (703)
T ss_pred eeee-eecCc----CCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEE
Confidence 2111 11111 123466665555677777778899999999999999984 58899999999888999999999999
Q ss_pred EEECCCCceeEEEeecC----------CcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEcc-cccccee
Q 043172 418 HWDLRTRTCIHRAVDEG----------CINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIE-NLTTKVD 486 (564)
Q Consensus 418 lwD~~~~~~~~~~~~~~----------~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~-~~~~~I~ 486 (564)
+||.+....+..+.... ...++++.|+.+|-.+++|+.+|.|.|||++.. +|+..-. +..-+|.
T Consensus 201 fwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~-----~pl~~kdh~~e~pi~ 275 (703)
T KOG2321|consen 201 FWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRAS-----KPLLVKDHGYELPIK 275 (703)
T ss_pred EecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccC-----CceeecccCCcccee
Confidence 99999877665554321 234899999999999999999999999999986 6655432 3456899
Q ss_pred EEEEcCCC--cEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCC
Q 043172 487 FMKFNNDA--QILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNH 560 (564)
Q Consensus 487 ~l~fspdg--~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~ 560 (564)
.+.|.+.+ ..|++.. ...++|||-.+|..+..+... ..++.+|+-|++.+++++..++.+..|=+..
T Consensus 276 ~l~~~~~~~q~~v~S~D---k~~~kiWd~~~Gk~~asiEpt----~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 276 KLDWQDTDQQNKVVSMD---KRILKIWDECTGKPMASIEPT----SDLNDFCFVPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred eecccccCCCceEEecc---hHHhhhcccccCCceeecccc----CCcCceeeecCCceEEEecCCCcceeEEccc
Confidence 99998763 3444433 578999999999887655433 5589999999999999999999888776543
No 197
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=8.7e-17 Score=159.06 Aligned_cols=304 Identities=15% Similarity=0.179 Sum_probs=227.7
Q ss_pred eeeeecccCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEee--CCCEEEEEeC
Q 043172 249 YSRLIDANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLP--DGSQAIIAGR 326 (564)
Q Consensus 249 ~~rl~~~~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fsp--dg~~l~s~~~ 326 (564)
.+++.....+.+|.+.|..|.|+..|..|++||.|..|.+|++... ...+.-..+|...|....|-| +...|++++.
T Consensus 129 vqr~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~-~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~ 207 (559)
T KOG1334|consen 129 VQRLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSG-SPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSR 207 (559)
T ss_pred HHHhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhcc-CcccccccccccchhhhhccCCCCCcCceeccc
Confidence 3444445556789999999999999999999999999999999753 234444567888888888988 4468899999
Q ss_pred CCeEEEEECC-CCceeeeccccccCCcceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEEEEee----ecC---cEEE
Q 043172 327 RKFFYSLDLV-KAKADKIGPLVGREEKSLEFFEVSPDS-SVIAFVGNEGYILLVSSKTKELIGTLK----MNG---TVRS 397 (564)
Q Consensus 327 dg~i~iwdl~-~~~~~~~~~~~~~~~~~v~~~~~spdg-~~la~~~~dg~I~lwd~~t~~~~~~~~----~~~---~V~~ 397 (564)
+|.+++=.+. ++.+.....+..|+. +|..+++-|+. ..|.+++.|+.+.-+|+++..+...+. +.. ...+
T Consensus 208 dgqvr~s~i~~t~~~e~t~rl~~h~g-~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~ 286 (559)
T KOG1334|consen 208 DGQVRVSEILETGYVENTKRLAPHEG-PVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYT 286 (559)
T ss_pred cCceeeeeeccccceecceecccccC-ccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeee
Confidence 9999987654 344444555555554 79999999975 467889999999999998876554443 222 5678
Q ss_pred EEEecCC-CEEEEEeCCCeEEEEECCCCc------eeEEEee-----cCCcceEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 043172 398 LAFADDG-KQLLSSGGDGQVYHWDLRTRT------CIHRAVD-----EGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQ 465 (564)
Q Consensus 398 l~~spdg-~~l~s~s~dg~V~lwD~~~~~------~~~~~~~-----~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~ 465 (564)
++..|.. ..+++++.|-.+++||.+.-. .+..+.. .....|++++|+.++.-|.+...|-.|++|.-.
T Consensus 287 Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~ 366 (559)
T KOG1334|consen 287 IAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKS 366 (559)
T ss_pred EecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccc
Confidence 8888854 589999999999999987522 1223322 345679999999887767777777789999654
Q ss_pred cccCCccee-------eEE-cccccc--ceeEEEE-cCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEE
Q 043172 466 EFLGGKRKP-------IKT-IENLTT--KVDFMKF-NNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRC 534 (564)
Q Consensus 466 ~~~~~~~~~-------~~~-~~~~~~--~I~~l~f-spdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~ 534 (564)
.+.+..+.+ ++. +++|.. .|-.+-| -|...|+++||. -|.|.||+-.+++.++.+.... .-|+|
T Consensus 367 ~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSD--CGhIFiW~K~t~eii~~MegDr---~VVNC 441 (559)
T KOG1334|consen 367 MGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSD--CGHIFIWDKKTGEIIRFMEGDR---HVVNC 441 (559)
T ss_pred cccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCc--cceEEEEecchhHHHHHhhccc---ceEec
Confidence 443222222 122 456643 3666655 578899999998 7999999999999887654443 47999
Q ss_pred EEEeCCCCEEEEEcCCCeEEEEEcC
Q 043172 535 LDFSPGGGFMAVGNAAGKVFLYKLN 559 (564)
Q Consensus 535 l~fspdg~~Lasgs~dG~V~lw~l~ 559 (564)
|.-+|--..||+.+-|--|+||.-.
T Consensus 442 LEpHP~~PvLAsSGid~DVKIWTP~ 466 (559)
T KOG1334|consen 442 LEPHPHLPVLASSGIDHDVKIWTPL 466 (559)
T ss_pred cCCCCCCchhhccCCccceeeecCC
Confidence 9999999999999999999999763
No 198
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.71 E-value=2.3e-17 Score=162.22 Aligned_cols=232 Identities=14% Similarity=0.207 Sum_probs=193.1
Q ss_pred CcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE
Q 043172 306 DCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKEL 385 (564)
Q Consensus 306 ~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~ 385 (564)
....+.+.++.+|++|+.+++.|++..+|..+++...- +.-.. .|..+.|-.+.+++|++ ....++||| ..|..
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~E--i~v~E--tv~Dv~~LHneq~~AVA-QK~y~yvYD-~~GtE 202 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFE--INVME--TVRDVTFLHNEQFFAVA-QKKYVYVYD-NNGTE 202 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeee--eehhh--hhhhhhhhcchHHHHhh-hhceEEEec-CCCcE
Confidence 34557889999999999999999999999999886432 22222 58888998888888876 568999999 67788
Q ss_pred EEEeeecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 043172 386 IGTLKMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQ 465 (564)
Q Consensus 386 ~~~~~~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~ 465 (564)
++.++....|..+.|.|..-+|++++..|.+..-|+.+|+.+..+....+ .+..++-+|-+..+-+|...|+|.+|...
T Consensus 203 lHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G-~~~vm~qNP~NaVih~GhsnGtVSlWSP~ 281 (545)
T KOG1272|consen 203 LHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAG-RTDVMKQNPYNAVIHLGHSNGTVSLWSPN 281 (545)
T ss_pred EeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCC-ccchhhcCCccceEEEcCCCceEEecCCC
Confidence 88888788999999999999999999999999999999999887775443 56788889999899999999999999998
Q ss_pred cccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEE
Q 043172 466 EFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMA 545 (564)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~La 545 (564)
.. .|+..+..|.++|++|++.++|+|+|+++. |..++|||++....+..+.+ ..+...++||..| +||
T Consensus 282 sk-----ePLvKiLcH~g~V~siAv~~~G~YMaTtG~--Dr~~kIWDlR~~~ql~t~~t----p~~a~~ls~Sqkg-lLA 349 (545)
T KOG1272|consen 282 SK-----EPLVKILCHRGPVSSIAVDRGGRYMATTGL--DRKVKIWDLRNFYQLHTYRT----PHPASNLSLSQKG-LLA 349 (545)
T ss_pred Cc-----chHHHHHhcCCCcceEEECCCCcEEeeccc--ccceeEeeeccccccceeec----CCCcccccccccc-cee
Confidence 86 899999999999999999999999999998 99999999998775554433 1456788898765 344
Q ss_pred EEcCCCeEEEEE
Q 043172 546 VGNAAGKVFLYK 557 (564)
Q Consensus 546 sgs~dG~V~lw~ 557 (564)
.+....|.||.
T Consensus 350 -~~~G~~v~iw~ 360 (545)
T KOG1272|consen 350 -LSYGDHVQIWK 360 (545)
T ss_pred -eecCCeeeeeh
Confidence 44556799995
No 199
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=8.3e-15 Score=154.43 Aligned_cols=236 Identities=16% Similarity=0.191 Sum_probs=162.4
Q ss_pred CcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEe---CCCeEEEEECCCCceeeeccccccCCcceEEEEEc
Q 043172 284 RRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAG---RRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVS 360 (564)
Q Consensus 284 g~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~---~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~s 360 (564)
..|.+||.++... +.+..+...+.+.+|||||+.|+..+ .+..+++|++.+++...+..+.++ +..+.|+
T Consensus 179 ~~l~~~d~dg~~~---~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~----~~~~~~S 251 (429)
T PRK03629 179 YELRVSDYDGYNQ---FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRH----NGAPAFS 251 (429)
T ss_pred eeEEEEcCCCCCC---EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCC----cCCeEEC
Confidence 3688888876532 23344567899999999999998764 345799999999877665544443 3458999
Q ss_pred CCCCEEEEEe-CCC--eEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEEeCC-C--eEEEEECCCCceeEEEeecC
Q 043172 361 PDSSVIAFVG-NEG--YILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSGGD-G--QVYHWDLRTRTCIHRAVDEG 434 (564)
Q Consensus 361 pdg~~la~~~-~dg--~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s~d-g--~V~lwD~~~~~~~~~~~~~~ 434 (564)
|||+.|++.. .+| .|++||+.+++......+...+....|+|+|+.|+.++.. + .|+++|+.++... .+....
T Consensus 252 PDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~ 330 (429)
T PRK03629 252 PDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEG 330 (429)
T ss_pred CCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCC
Confidence 9999888763 344 5999999988776554455678899999999988877654 3 5666787766543 333222
Q ss_pred CcceEEEEECCCCCEEEEEeCC---CcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCC-CeEEE
Q 043172 435 CINGTALCTSPDGTFFAAGSDS---GIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKK-NSLKL 510 (564)
Q Consensus 435 ~~~i~~l~~sp~g~~lasgs~d---g~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d-~~I~l 510 (564)
. .....+|+|+|++|+..+.+ ..|.+||+.++ . ...+... .......|+|||++|++++.... ..+.+
T Consensus 331 ~-~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g-----~-~~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~ 402 (429)
T PRK03629 331 S-QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG-----G-VQVLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNL 402 (429)
T ss_pred C-CccCEEECCCCCEEEEEEccCCCceEEEEECCCC-----C-eEEeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEE
Confidence 2 34578899999998876543 35888898764 2 2233321 23346889999999999887321 23677
Q ss_pred EEcCCCceeccCCCCCCCCCCcEEEEEeC
Q 043172 511 IHIPSYNVFSNWPPANRNLQYPRCLDFSP 539 (564)
Q Consensus 511 wdl~s~~~~~~~~~~~~~~~~V~~l~fsp 539 (564)
+++. +.....++. +.+.+...+|+|
T Consensus 403 ~~~~-G~~~~~l~~---~~~~~~~p~Wsp 427 (429)
T PRK03629 403 VSTD-GRFKARLPA---TDGQVKFPAWSP 427 (429)
T ss_pred EECC-CCCeEECcc---CCCCcCCcccCC
Confidence 7774 444443433 336678888987
No 200
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.70 E-value=9.5e-15 Score=149.80 Aligned_cols=286 Identities=18% Similarity=0.215 Sum_probs=183.1
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEe-CCCeEEEEECCCCceeee
Q 043172 265 INSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAG-RRKFFYSLDLVKAKADKI 343 (564)
Q Consensus 265 V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~-~dg~i~iwdl~~~~~~~~ 343 (564)
-..+.|+|||+++++++.||.|.++|+. +.+.+..+..... ...+++|++|+++++++ ..+.+.++|..+.+..+.
T Consensus 39 h~~~~~s~Dgr~~yv~~rdg~vsviD~~--~~~~v~~i~~G~~-~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~ 115 (369)
T PF02239_consen 39 HAGLKFSPDGRYLYVANRDGTVSVIDLA--TGKVVATIKVGGN-PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKT 115 (369)
T ss_dssp EEEEE-TT-SSEEEEEETTSEEEEEETT--SSSEEEEEE-SSE-EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEE
T ss_pred eeEEEecCCCCEEEEEcCCCeEEEEECC--cccEEEEEecCCC-cceEEEcCCCCEEEEEecCCCceeEeccccccceee
Confidence 3457899999999999999999999998 4457888876554 57899999999999886 678999999999887654
Q ss_pred cccccc----CCcceEEEEEcCCCCEEEEEeC-CCeEEEEECCCCcEE--EEeeecCcEEEEEEecCCCEEEEE-eCCCe
Q 043172 344 GPLVGR----EEKSLEFFEVSPDSSVIAFVGN-EGYILLVSSKTKELI--GTLKMNGTVRSLAFADDGKQLLSS-GGDGQ 415 (564)
Q Consensus 344 ~~~~~~----~~~~v~~~~~spdg~~la~~~~-dg~I~lwd~~t~~~~--~~~~~~~~V~~l~~spdg~~l~s~-s~dg~ 415 (564)
....+. ....+..+..+|....+++.-. .+.|.+.|......+ ..+.......+..|+|++++++++ .....
T Consensus 116 I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~ 195 (369)
T PF02239_consen 116 IPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNK 195 (369)
T ss_dssp EE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTE
T ss_pred cccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccce
Confidence 333221 2235677888888886655544 589999998766543 334455678899999999988775 45678
Q ss_pred EEEEECCCCceeEEEeec---CCcceEEE-------EE--CCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEcccccc
Q 043172 416 VYHWDLRTRTCIHRAVDE---GCINGTAL-------CT--SPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTT 483 (564)
Q Consensus 416 V~lwD~~~~~~~~~~~~~---~~~~i~~l-------~~--sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~ 483 (564)
|-++|..+++.+..+... +...+..+ .| ...+...++.-..+.+.+|+...+ +.++++.....
T Consensus 196 i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~w-----kvv~~I~~~G~ 270 (369)
T PF02239_consen 196 IAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAW-----KVVKTIPTQGG 270 (369)
T ss_dssp EEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBT-----SEEEEEE-SSS
T ss_pred eEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcC-----eEEEEEECCCC
Confidence 999999998877655321 11112211 11 112222222223345667888877 89999887666
Q ss_pred ceeEEEEcCCCcEEEEE---ecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEc--CCCeEEEEEc
Q 043172 484 KVDFMKFNNDAQILAIC---STMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGN--AAGKVFLYKL 558 (564)
Q Consensus 484 ~I~~l~fspdg~~La~~---s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs--~dG~V~lw~l 558 (564)
+ ..+..+|++++|.+. +.. .+.|.++|..+.+....+.... ...+..+.|+++|+++.++. .+|.|.+||.
T Consensus 271 g-lFi~thP~s~~vwvd~~~~~~-~~~v~viD~~tl~~~~~i~~~~--~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~ 346 (369)
T PF02239_consen 271 G-LFIKTHPDSRYVWVDTFLNPD-ADTVQVIDKKTLKVVKTITPGP--GKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDA 346 (369)
T ss_dssp S---EE--TT-SEEEEE-TT-SS-HT-EEEEECCGTEEEE-HHHHH--T--EEEEEE-TTSSEEEEEEE--TTEEEEEET
T ss_pred c-ceeecCCCCccEEeeccCCCC-CceEEEEECcCcceeEEEeccC--CCcEeccEECCCCCEEEEEEecCCCEEEEEEC
Confidence 6 778889999999998 332 5899999999987766553221 13488999999999766554 3447999998
Q ss_pred CCCC
Q 043172 559 NHYH 562 (564)
Q Consensus 559 ~~~~ 562 (564)
.+++
T Consensus 347 ~Tl~ 350 (369)
T PF02239_consen 347 KTLK 350 (369)
T ss_dssp TTTE
T ss_pred CCcE
Confidence 8764
No 201
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=3.1e-16 Score=153.24 Aligned_cols=197 Identities=21% Similarity=0.175 Sum_probs=155.6
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeecc
Q 043172 266 NSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGP 345 (564)
Q Consensus 266 ~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~ 345 (564)
.+++|+++|..|++++.||++|||++. ....+.....|...|.++.|+|||+.|++.+.+ ...||+.+++.......
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~P--s~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t 224 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWP--SMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT 224 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecC--cchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC
Confidence 789999999999999999999999865 333555566788899999999999999999999 89999999995533322
Q ss_pred ccccCCcceEEEEEcCCC---CE--EEEEeCCCeEEEEECCCCcE------EEEeeecCcEEEEEEecCCCEEEEEeCCC
Q 043172 346 LVGREEKSLEFFEVSPDS---SV--IAFVGNEGYILLVSSKTKEL------IGTLKMNGTVRSLAFADDGKQLLSSGGDG 414 (564)
Q Consensus 346 ~~~~~~~~v~~~~~spdg---~~--la~~~~dg~I~lwd~~t~~~------~~~~~~~~~V~~l~~spdg~~l~s~s~dg 414 (564)
..... ..+..+.|+.++ .+ ++.....+.|..|++..... ...+.....|++++.+++|++++.|+.+|
T Consensus 225 ~~~k~-~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dG 303 (398)
T KOG0771|consen 225 PFSKD-EMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDG 303 (398)
T ss_pred Ccccc-hhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCC
Confidence 22222 246678888776 33 33334456777776643222 11122345899999999999999999999
Q ss_pred eEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCc
Q 043172 415 QVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQE 466 (564)
Q Consensus 415 ~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~ 466 (564)
.|-+++..+.++++.+...|...|+.+.|+|+.+++++-+.+..+.|..+..
T Consensus 304 sVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 304 SVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred cEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 9999999999999888888888999999999999999999888888877654
No 202
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.70 E-value=4.1e-15 Score=140.40 Aligned_cols=236 Identities=11% Similarity=0.092 Sum_probs=178.2
Q ss_pred EEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCc-eeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 043172 301 SIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAK-ADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVS 379 (564)
Q Consensus 301 ~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~-~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd 379 (564)
.++.-..+|+|.+|++++..++++.....|+||...... ......+..|.. .|+++.|+|.++.|++++.|..-++|.
T Consensus 5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~-~vtgvdWap~snrIvtcs~drnayVw~ 83 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDK-IVTGVDWAPKSNRIVTCSHDRNAYVWT 83 (361)
T ss_pred EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCc-ceeEEeecCCCCceeEccCCCCccccc
Confidence 344456799999999999999999999999999998887 556666666665 899999999999999999999999999
Q ss_pred C-CCCcEEEEe---eecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCcee---EEEeecCCcceEEEEECCCCCEEEE
Q 043172 380 S-KTKELIGTL---KMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCI---HRAVDEGCINGTALCTSPDGTFFAA 452 (564)
Q Consensus 380 ~-~t~~~~~~~---~~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~---~~~~~~~~~~i~~l~~sp~g~~las 452 (564)
. ..+++..++ +++..++++.|+|.++.|++|+....|.+|-+....-- +.+.......|+++.|+|++-++++
T Consensus 84 ~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaa 163 (361)
T KOG1523|consen 84 QPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAA 163 (361)
T ss_pred cCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecc
Confidence 8 555554443 48999999999999999999999999999988653321 1122233446899999999999999
Q ss_pred EeCCCcEEEEeCCcc-----c----CCccee----eEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCc-e
Q 043172 453 GSDSGIVNVYNRQEF-----L----GGKRKP----IKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYN-V 518 (564)
Q Consensus 453 gs~dg~V~iwd~~~~-----~----~~~~~~----~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~-~ 518 (564)
||.|+..+||..--. . -+...| +..+....++|..+.|+|+|..|+..+. |..+.+-|..... .
T Consensus 164 Gs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~H--ds~v~~~da~~p~~~ 241 (361)
T KOG1523|consen 164 GSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGH--DSTVSFVDAAGPSER 241 (361)
T ss_pred cccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecC--CCceEEeecCCCchh
Confidence 999999999874321 0 011122 2233345789999999999999999999 9999999986553 1
Q ss_pred eccCCCCCCCCCCcEEEEEeCCCC
Q 043172 519 FSNWPPANRNLQYPRCLDFSPGGG 542 (564)
Q Consensus 519 ~~~~~~~~~~~~~V~~l~fspdg~ 542 (564)
.... ....-+..++.|-.+..
T Consensus 242 v~~~---~~~~lP~ls~~~ise~~ 262 (361)
T KOG1523|consen 242 VQSV---ATAQLPLLSVSWISENS 262 (361)
T ss_pred ccch---hhccCCceeeEeecCCc
Confidence 2221 22224456666655433
No 203
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=1.5e-15 Score=144.38 Aligned_cols=198 Identities=10% Similarity=0.137 Sum_probs=154.7
Q ss_pred CEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcC--CCCEEEEEeCCCeEEEEECCCCcEEEEee---ec-
Q 043172 319 SQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSP--DSSVIAFVGNEGYILLVSSKTKELIGTLK---MN- 392 (564)
Q Consensus 319 ~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~sp--dg~~la~~~~dg~I~lwd~~t~~~~~~~~---~~- 392 (564)
+.++++...|.|++||..+++... .+.++.. .+..+.|.. ..+.+.+++.||+|++||+++...+..+. ++
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~--~fk~~~~-~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~ 117 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLE--EFKGPPA-TTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSG 117 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhh--eecCCCC-cccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCC
Confidence 567888889999999999987643 3555444 566777766 56788999999999999999887766655 33
Q ss_pred CcEEEEEEecCCCEEEEEeC----CCeEEEEECCCCce-eEEEeecCCcceEEEEECCCC-CEEEEEeCCCcEEEEeCCc
Q 043172 393 GTVRSLAFADDGKQLLSSGG----DGQVYHWDLRTRTC-IHRAVDEGCINGTALCTSPDG-TFFAAGSDSGIVNVYNRQE 466 (564)
Q Consensus 393 ~~V~~l~~spdg~~l~s~s~----dg~V~lwD~~~~~~-~~~~~~~~~~~i~~l~~sp~g-~~lasgs~dg~V~iwd~~~ 466 (564)
.+..+++.+-.++.+++|+. +..|.+||+|..+. +..+...|...|++++|+|.. +.|++||.||.|+|||+..
T Consensus 118 ~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~ 197 (376)
T KOG1188|consen 118 TPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKK 197 (376)
T ss_pred CcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCC
Confidence 35677777667788887754 67899999998777 777877788899999999975 5999999999999999986
Q ss_pred ccCCcceeeEEccccccceeEEEEcCCC-cEEEEEecCCCCeEEEEEcCCCceeccCC
Q 043172 467 FLGGKRKPIKTIENLTTKVDFMKFNNDA-QILAICSTMKKNSLKLIHIPSYNVFSNWP 523 (564)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~I~~l~fspdg-~~La~~s~~~d~~I~lwdl~s~~~~~~~~ 523 (564)
. ..-.++...-++.+.|.++.|..++ ..|.+-+. ..+..+|++..+.....++
T Consensus 198 d--~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH--~Etf~~~ele~~~~~~~~~ 251 (376)
T KOG1188|consen 198 D--NEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTH--METFAIYELEDGSEETWLE 251 (376)
T ss_pred C--cchhhHHHhhcccceeeeeeeecCCcceEEEEEc--cCceeEEEccCCChhhccc
Confidence 5 3345566666788999999999887 33555565 7899999998877554443
No 204
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.69 E-value=1.8e-15 Score=151.47 Aligned_cols=222 Identities=17% Similarity=0.239 Sum_probs=153.4
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCC--ceeEEEEeCCcCeEEEEEe-----eCCCEEEEEeCCCeEEEEECC
Q 043172 264 PINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRN--TKIQSIFLEDCPVRKASFL-----PDGSQAIIAGRRKFFYSLDLV 336 (564)
Q Consensus 264 ~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~--~~~~~~~~~~~~I~~l~fs-----pdg~~l~s~~~dg~i~iwdl~ 336 (564)
.+....++-.|.+|+..- ...+.+|+..+... ..+...........|-+|. |.+--|+++-.-|.+++.|..
T Consensus 125 ~~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~ 203 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI 203 (636)
T ss_pred ceeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence 455555555666665542 34688888764321 1122111122223344452 567778888888899998877
Q ss_pred CCceeeecccc-ccCCcceEEEEEcCCCC-EEEEEeCCCeEEEEECCC--------------CcE--------------E
Q 043172 337 KAKADKIGPLV-GREEKSLEFFEVSPDSS-VIAFVGNEGYILLVSSKT--------------KEL--------------I 386 (564)
Q Consensus 337 ~~~~~~~~~~~-~~~~~~v~~~~~spdg~-~la~~~~dg~I~lwd~~t--------------~~~--------------~ 386 (564)
.....++.... ......++|+.|-|.+. .++++-.+|.+++||..- +.. +
T Consensus 204 ~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv 283 (636)
T KOG2394|consen 204 NFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPV 283 (636)
T ss_pred hhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCcc
Confidence 64433221111 11225799999999644 555566789999997521 111 1
Q ss_pred EEee-ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 043172 387 GTLK-MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQ 465 (564)
Q Consensus 387 ~~~~-~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~ 465 (564)
.... ..+.|..++|+|||++|++.+.||.++|||..+...+..+...- ....|++|||||+||++|++|..|.||.+.
T Consensus 284 ~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYF-GGLLCvcWSPDGKyIvtGGEDDLVtVwSf~ 362 (636)
T KOG2394|consen 284 ARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYF-GGLLCVCWSPDGKYIVTGGEDDLVTVWSFE 362 (636)
T ss_pred ceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhc-cceEEEEEcCCccEEEecCCcceEEEEEec
Confidence 1111 24678999999999999999999999999999877665444322 256899999999999999999999999999
Q ss_pred cccCCcceeeEEccccccceeEEEEcC
Q 043172 466 EFLGGKRKPIKTIENLTTKVDFMKFNN 492 (564)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~I~~l~fsp 492 (564)
.. +.+..-.+|..+|+.|+|.|
T Consensus 363 er-----RVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 363 ER-----RVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred cc-----eEEEeccccccceeeEeecc
Confidence 87 88999999999999999987
No 205
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.69 E-value=9.3e-16 Score=141.04 Aligned_cols=258 Identities=17% Similarity=0.139 Sum_probs=176.1
Q ss_pred cCCCeeeeeeeecccCCC-CCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEe-----
Q 043172 242 LSPGLLEYSRLIDANADE-SSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFL----- 315 (564)
Q Consensus 242 l~~~~~d~~rl~~~~~~~-~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fs----- 315 (564)
.....|.++..+++...+ .|...|+.+.--|+ ..|.+-+.|..+.+|++.......+.++. +.++.|.
T Consensus 35 G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~-----~nslgFCrfSl~ 108 (323)
T KOG0322|consen 35 GIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIV-----VNSLGFCRFSLV 108 (323)
T ss_pred ceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeee-----ccccccccceec
Confidence 334567777777776666 57889999999998 56778889999999999876544454443 3444443
Q ss_pred eCCC---E-EEEEeCCC-eEEEEECCCCceeeecccc-ccCCcceEEEEEcC-CCC--EEEEEeCCCeEEEEECCCCcEE
Q 043172 316 PDGS---Q-AIIAGRRK-FFYSLDLVKAKADKIGPLV-GREEKSLEFFEVSP-DSS--VIAFVGNEGYILLVSSKTKELI 386 (564)
Q Consensus 316 pdg~---~-l~s~~~dg-~i~iwdl~~~~~~~~~~~~-~~~~~~v~~~~~sp-dg~--~la~~~~dg~I~lwd~~t~~~~ 386 (564)
+.++ . ++.-++.. .+++-|.......++..-. ......+.|..+.. ++. ++++|..+|.|.+||+.++..+
T Consensus 109 ~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~ 188 (323)
T KOG0322|consen 109 KKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKI 188 (323)
T ss_pred cCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCcee
Confidence 2221 1 22212111 1333333222222221111 11123566666433 333 3455667899999999987443
Q ss_pred EEe-----------eecCcEEEEEEecCCCEEEEEeCCCeEEEEECCC--CceeE--EEeecCCcceEEEEECCCCCEEE
Q 043172 387 GTL-----------KMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRT--RTCIH--RAVDEGCINGTALCTSPDGTFFA 451 (564)
Q Consensus 387 ~~~-----------~~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~--~~~~~--~~~~~~~~~i~~l~~sp~g~~la 451 (564)
-.+ .|..+|.++.|.+.-..=++|+.+-.+..|.+.. +.+.. .....+ .++..+.+-||++.+|
T Consensus 189 ~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lkn-pGv~gvrIRpD~KIlA 267 (323)
T KOG0322|consen 189 IQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKN-PGVSGVRIRPDGKILA 267 (323)
T ss_pred eccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecC-CCccceEEccCCcEEe
Confidence 332 2778999999988655567777788888888864 33222 111122 2566778889999999
Q ss_pred EEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEc
Q 043172 452 AGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHI 513 (564)
Q Consensus 452 sgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl 513 (564)
+++-||.|+||+.++. .|+..+..|...|++++|+|+..++|++|. |..|.+|++
T Consensus 268 TAGWD~RiRVyswrtl-----~pLAVLkyHsagvn~vAfspd~~lmAaask--D~rISLWkL 322 (323)
T KOG0322|consen 268 TAGWDHRIRVYSWRTL-----NPLAVLKYHSAGVNAVAFSPDCELMAAASK--DARISLWKL 322 (323)
T ss_pred ecccCCcEEEEEeccC-----CchhhhhhhhcceeEEEeCCCCchhhhccC--CceEEeeec
Confidence 9999999999999998 999999999999999999999999999998 999999986
No 206
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=1.5e-15 Score=160.25 Aligned_cols=218 Identities=18% Similarity=0.202 Sum_probs=154.0
Q ss_pred CCCCCCeeEEEEcCCCCEEEEEeCC---CcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEe-CCCe--EEE
Q 043172 259 ESSTGPINSVQFHRNAQLLLVAGLD---RRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAG-RRKF--FYS 332 (564)
Q Consensus 259 ~~h~~~V~~l~fspdg~~l~s~s~d---g~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~-~dg~--i~i 332 (564)
..|...|.+++|||+|+.|++++.+ ..|++|++.++....+..+.+ ....++|+|+|++|++++ .++. |++
T Consensus 200 t~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g---~~~~~~wSPDG~~La~~~~~~g~~~Iy~ 276 (429)
T PRK01742 200 NRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG---HNGAPAFSPDGSRLAFASSKDGVLNIYV 276 (429)
T ss_pred ccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC---ccCceeECCCCCEEEEEEecCCcEEEEE
Confidence 3577889999999999999988754 369999997654334433333 345789999999998875 5665 555
Q ss_pred EECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEe-CCCeEEEEECC--CCcEEEEeeecCcEEEEEEecCCCEEEE
Q 043172 333 LDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVG-NEGYILLVSSK--TKELIGTLKMNGTVRSLAFADDGKQLLS 409 (564)
Q Consensus 333 wdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~-~dg~I~lwd~~--t~~~~~~~~~~~~V~~l~~spdg~~l~s 409 (564)
||+.++...+ +..+.. .+....|+|+|+.|++++ .+|...||++. ++.. ..+.+.+ .++.|+|+|+.|++
T Consensus 277 ~d~~~~~~~~---lt~~~~-~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~-~~l~~~~--~~~~~SpDG~~ia~ 349 (429)
T PRK01742 277 MGANGGTPSQ---LTSGAG-NNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA-SLVGGRG--YSAQISADGKTLVM 349 (429)
T ss_pred EECCCCCeEe---eccCCC-CcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEecCCC--CCccCCCCCCEEEE
Confidence 6777776544 333332 467899999999887765 46777777654 3322 2233333 46789999999988
Q ss_pred EeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEE
Q 043172 410 SGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMK 489 (564)
Q Consensus 410 ~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~ 489 (564)
++.++ +.+||+.++...... ... ....+.|+|+|++|++++.+|.+.+|.+... ....+..+..|.+.+..++
T Consensus 350 ~~~~~-i~~~Dl~~g~~~~lt-~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~---~G~~~~~l~~~~g~~~~p~ 422 (429)
T PRK01742 350 INGDN-VVKQDLTSGSTEVLS-STF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSA---DGRFKARLPGSDGQVKFPA 422 (429)
T ss_pred EcCCC-EEEEECCCCCeEEec-CCC--CCCCceECCCCCEEEEEEcCCCceEEEEEEC---CCCceEEccCCCCCCCCcc
Confidence 87764 666999988754322 221 2356789999999999999998888776321 1166777877888889999
Q ss_pred EcCC
Q 043172 490 FNND 493 (564)
Q Consensus 490 fspd 493 (564)
|+|-
T Consensus 423 wsp~ 426 (429)
T PRK01742 423 WSPY 426 (429)
T ss_pred cCCC
Confidence 9984
No 207
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.68 E-value=2.2e-15 Score=140.32 Aligned_cols=245 Identities=14% Similarity=0.207 Sum_probs=178.9
Q ss_pred CCCCCCeeEEEEcCCC-----CEEEEEeCCCcEEEEEecCCCCc--eeEEE-----EeCCcCeEEEEEee-CCCEEEEEe
Q 043172 259 ESSTGPINSVQFHRNA-----QLLLVAGLDRRLRFFQIDGKRNT--KIQSI-----FLEDCPVRKASFLP-DGSQAIIAG 325 (564)
Q Consensus 259 ~~h~~~V~~l~fspdg-----~~l~s~s~dg~I~lwd~~~~~~~--~~~~~-----~~~~~~I~~l~fsp-dg~~l~s~~ 325 (564)
..|.-|++.+.|.|+. .+|||++ ..++||.+...... +...+ ..+..|+++..|+. +-++|.+++
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 4588999999999976 3566654 57999998742211 11111 22457899999986 678999999
Q ss_pred CCCeEEEEECCCCceeee-ccccccCCcceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEEEEee----ecCcEEEEE
Q 043172 326 RRKFFYSLDLVKAKADKI-GPLVGREEKSLEFFEVSPDS-SVIAFVGNEGYILLVSSKTKELIGTLK----MNGTVRSLA 399 (564)
Q Consensus 326 ~dg~i~iwdl~~~~~~~~-~~~~~~~~~~v~~~~~spdg-~~la~~~~dg~I~lwd~~t~~~~~~~~----~~~~V~~l~ 399 (564)
-|-++.|||++++..-.+ .++..|. +.|..++|...+ +.||++|.||.|++||++..+....+. ...+...++
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLIAHD-KEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLs 249 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLIAHD-KEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLS 249 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEEecC-cceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeec
Confidence 999999999999743112 2344554 489999999865 578999999999999999876554443 245788999
Q ss_pred Eec-CCCEEEEEeCC-CeEEEEECCCCc-eeEEEeecCCcceEEEEECCCC-CEEEEEeCCCcEEEEeCCcccC-Cccee
Q 043172 400 FAD-DGKQLLSSGGD-GQVYHWDLRTRT-CIHRAVDEGCINGTALCTSPDG-TFFAAGSDSGIVNVYNRQEFLG-GKRKP 474 (564)
Q Consensus 400 ~sp-dg~~l~s~s~d-g~V~lwD~~~~~-~~~~~~~~~~~~i~~l~~sp~g-~~lasgs~dg~V~iwd~~~~~~-~~~~~ 474 (564)
|++ |.+++++-..| ..|.+.|++... .+.++..| ...|..|+|.|.. ..|++++.|..+-|||+..... ....|
T Consensus 250 wnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H-~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dP 328 (364)
T KOG0290|consen 250 WNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNH-QASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDP 328 (364)
T ss_pred cCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcC-cccccceEecCCCCceeeecCCcceEEEEecccccccCCCCc
Confidence 998 45777776554 579999999754 44555544 4578999999975 5899999999999999987632 22334
Q ss_pred eEEccccccceeEEEEcC-CCcEEEEEecCCCCeEEEE
Q 043172 475 IKTIENLTTKVDFMKFNN-DAQILAICSTMKKNSLKLI 511 (564)
Q Consensus 475 ~~~~~~~~~~I~~l~fsp-dg~~La~~s~~~d~~I~lw 511 (564)
+.... ..+.|+.+.|++ .+.+++++.. +.+.+.
T Consensus 329 ilay~-a~~EVNqi~Ws~~~~Dwiai~~~---kkleiL 362 (364)
T KOG0290|consen 329 ILAYT-AGGEVNQIQWSSSQPDWIAICFG---KKLEIL 362 (364)
T ss_pred hhhhh-ccceeeeeeecccCCCEEEEEec---CeeeEE
Confidence 44444 568899999996 6788998885 455543
No 208
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.68 E-value=2.4e-14 Score=135.22 Aligned_cols=241 Identities=16% Similarity=0.273 Sum_probs=170.8
Q ss_pred CeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCC-------CeEEEEEC
Q 043172 308 PVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNE-------GYILLVSS 380 (564)
Q Consensus 308 ~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-------g~I~lwd~ 380 (564)
...+++|+.|..-++++..+| ++||+.+--+........ .. .+.-+..---.++||..|.. ..|.|||=
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~--~~-G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFI--DG-GFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccc--cC-chhhhhHhhhhceEEEecCCCCCCCCCceEEEEec
Confidence 345589998888888777665 899987653221111111 11 11111111224566654432 47999998
Q ss_pred CCCcEEEEeeecCcEEEEEEecCCCEEEEEeCCCeEEEEECC-CCceeEEEeecC-CcceEEEEECCCCCEEEEE-eCCC
Q 043172 381 KTKELIGTLKMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLR-TRTCIHRAVDEG-CINGTALCTSPDGTFFAAG-SDSG 457 (564)
Q Consensus 381 ~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~-~~~~~~~~~~~~-~~~i~~l~~sp~g~~lasg-s~dg 457 (564)
....++..+....+|.++.+.++ .|++.- .+.|++|... ..+.++.+.... ..+..+++-+.+..+||.- -.-|
T Consensus 83 ~k~~~i~el~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~G 159 (346)
T KOG2111|consen 83 LKERCIIELSFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTG 159 (346)
T ss_pred ccCcEEEEEEeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccc
Confidence 78888999999999999999865 455554 5789999998 456666555433 2233333333333455553 4579
Q ss_pred cEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCe-EEEEEcCCCceeccCCCCCCCCCCcEEEE
Q 043172 458 IVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNS-LKLIHIPSYNVFSNWPPANRNLQYPRCLD 536 (564)
Q Consensus 458 ~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~-I~lwdl~s~~~~~~~~~~~~~~~~V~~l~ 536 (564)
.|.|-|+... ...+...+..|.+.|.|++.+-+|.+||++|. .|+ |||||..+++.+..+.....+ ..|.+++
T Consensus 160 qvQi~dL~~~---~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaSt--kGTLIRIFdt~~g~~l~E~RRG~d~-A~iy~ia 233 (346)
T KOG2111|consen 160 QVQIVDLAST---KPNAPSIINAHDSDIACVALNLQGTLVATAST--KGTLIRIFDTEDGTLLQELRRGVDR-ADIYCIA 233 (346)
T ss_pred eEEEEEhhhc---CcCCceEEEcccCceeEEEEcCCccEEEEecc--CcEEEEEEEcCCCcEeeeeecCCch-heEEEEE
Confidence 9999999875 11245778899999999999999999999998 565 899999999998876554433 6699999
Q ss_pred EeCCCCEEEEEcCCCeEEEEEcCCC
Q 043172 537 FSPGGGFMAVGNAAGKVFLYKLNHY 561 (564)
Q Consensus 537 fspdg~~Lasgs~dG~V~lw~l~~~ 561 (564)
|||++.+||++++.|+|+||.+..-
T Consensus 234 FSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 234 FSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred eCCCccEEEEEcCCCeEEEEEeecC
Confidence 9999999999999999999998753
No 209
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.68 E-value=1.3e-16 Score=157.05 Aligned_cols=270 Identities=15% Similarity=0.207 Sum_probs=209.7
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCcee
Q 043172 262 TGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKAD 341 (564)
Q Consensus 262 ~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~ 341 (564)
.-.-+.+.++.+|.+|+.||.-|.|..+|..+. .+...+.. ...|..+.|..+.++++++ ..++++|||-..-+..
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~--~L~~Ei~v-~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~GtElH 204 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTK--KLHFEINV-METVRDVTFLHNEQFFAVA-QKKYVYVYDNNGTELH 204 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccc--eeeeeeeh-hhhhhhhhhhcchHHHHhh-hhceEEEecCCCcEEe
Confidence 345678999999999999999999999998744 34444443 3578899999887777765 4678999997655543
Q ss_pred eeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEeCCCeEEEEE
Q 043172 342 KIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQVYHWD 420 (564)
Q Consensus 342 ~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~V~lwD 420 (564)
+ +..+. .|..+.|-|..-+|++++..|.+...|+.+|+.+..+. ..+.+..++-+|-...+-+|..+|+|.+|.
T Consensus 205 C---lk~~~--~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWS 279 (545)
T KOG1272|consen 205 C---LKRHI--RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWS 279 (545)
T ss_pred e---hhhcC--chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecC
Confidence 3 33333 47889999999899999999999999999999999888 678899999999888999999999999999
Q ss_pred CCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEE
Q 043172 421 LRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAIC 500 (564)
Q Consensus 421 ~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~ 500 (564)
..+..++..+..+.+ ++.+|++.++|+|+||.+.|..|+|||++.. ..+.++.. ..+...++||..| +||.+
T Consensus 280 P~skePLvKiLcH~g-~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~-----~ql~t~~t-p~~a~~ls~Sqkg-lLA~~ 351 (545)
T KOG1272|consen 280 PNSKEPLVKILCHRG-PVSSIAVDRGGRYMATTGLDRKVKIWDLRNF-----YQLHTYRT-PHPASNLSLSQKG-LLALS 351 (545)
T ss_pred CCCcchHHHHHhcCC-CcceEEECCCCcEEeecccccceeEeeeccc-----cccceeec-CCCcccccccccc-ceeee
Confidence 999888877765544 7899999999999999999999999999987 55555554 5677889998766 34443
Q ss_pred ecCCCCeEEEEEcC-CCc--eeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCe
Q 043172 501 STMKKNSLKLIHIP-SYN--VFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGK 552 (564)
Q Consensus 501 s~~~d~~I~lwdl~-s~~--~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~ 552 (564)
. ...|.||.=. .+. ....+-.+. -.+.|..+.|.|-...|-+|...|.
T Consensus 352 -~--G~~v~iw~d~~~~s~~~~~pYm~H~-~~~~V~~l~FcP~EDvLGIGH~~G~ 402 (545)
T KOG1272|consen 352 -Y--GDHVQIWKDALKGSGHGETPYMNHR-CGGPVEDLRFCPYEDVLGIGHAGGI 402 (545)
T ss_pred -c--CCeeeeehhhhcCCCCCCcchhhhc-cCcccccceeccHHHeeeccccCCc
Confidence 3 4689999532 211 111111222 2258999999998888877776664
No 210
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=2.5e-14 Score=151.47 Aligned_cols=236 Identities=16% Similarity=0.177 Sum_probs=161.7
Q ss_pred CcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeC---CCeEEEEECCCCceeeeccccccCCcceEEEEEc
Q 043172 284 RRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGR---RKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVS 360 (564)
Q Consensus 284 g~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~---dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~s 360 (564)
..|.+||.++. ....+..+..++.+.+|+|||+.|+..+. +..|++||+.++....+....+ .+....|+
T Consensus 182 ~~l~~~d~dg~---~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g----~~~~~~~S 254 (435)
T PRK05137 182 KRLAIMDQDGA---NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPG----MTFAPRFS 254 (435)
T ss_pred eEEEEECCCCC---CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCC----cccCcEEC
Confidence 36777877654 33445567789999999999999988763 4689999999987655433322 45678999
Q ss_pred CCCCEEEEE-eCCC--eEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEEeC-C--CeEEEEECCCCceeEEEeecC
Q 043172 361 PDSSVIAFV-GNEG--YILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSGG-D--GQVYHWDLRTRTCIHRAVDEG 434 (564)
Q Consensus 361 pdg~~la~~-~~dg--~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s~-d--g~V~lwD~~~~~~~~~~~~~~ 434 (564)
|+|+.|++. +.++ .|++||+.++.......+.+.....+|+|||+.|+.++. + ..|++||+..+... .+....
T Consensus 255 PDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~ 333 (435)
T PRK05137 255 PDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGG 333 (435)
T ss_pred CCCCEEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCC
Confidence 999987654 4444 588889988876554445566778999999998887764 3 37999998766543 333222
Q ss_pred CcceEEEEECCCCCEEEEEeCC---CcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCC----Ce
Q 043172 435 CINGTALCTSPDGTFFAAGSDS---GIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKK----NS 507 (564)
Q Consensus 435 ~~~i~~l~~sp~g~~lasgs~d---g~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d----~~ 507 (564)
.......|+|+|++|+..+.+ ..|.+|++... ....+.. ...+..+.|+|||+.|+..+.... ..
T Consensus 334 -~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~------~~~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~ 405 (435)
T PRK05137 334 -GRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGS------GERILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPK 405 (435)
T ss_pred -CcccCeEECCCCCEEEEEEcCCCceEEEEEECCCC------ceEeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcce
Confidence 234568899999999887643 35778887543 2233322 234678899999999987765322 36
Q ss_pred EEEEEcCCCceeccCCCCCCCCCCcEEEEEeCC
Q 043172 508 LKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPG 540 (564)
Q Consensus 508 I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspd 540 (564)
|.++++..+.. ..++.. +.+...+|+|-
T Consensus 406 L~~~dl~g~~~-~~l~~~----~~~~~p~Wsp~ 433 (435)
T PRK05137 406 LYTVDLTGRNE-REVPTP----GDASDPAWSPL 433 (435)
T ss_pred EEEEECCCCce-EEccCC----CCccCcccCCC
Confidence 78888866544 333321 34667788873
No 211
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=2.3e-15 Score=144.97 Aligned_cols=253 Identities=13% Similarity=0.074 Sum_probs=185.5
Q ss_pred EEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeee---ccccc-cCCcceEEEEEcCCCCEEEEEeCCCeEE
Q 043172 301 SIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKI---GPLVG-REEKSLEFFEVSPDSSVIAFVGNEGYIL 376 (564)
Q Consensus 301 ~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~---~~~~~-~~~~~v~~~~~spdg~~la~~~~dg~I~ 376 (564)
.+.+|.+.|.++.|+.++++|++||.|..+.+|.+......++ ..+.+ ++...|.|++|.....++++|+.+++|.
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI 130 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVI 130 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeE
Confidence 4567899999999999999999999999999999875422222 12333 3336799999999999999999999999
Q ss_pred EEECCCCcEEEEeeecC---cEEEEEEecCCCEEEEEeCCCeEEEEECCCCc-eeEEEe-ecCCcceEEEEECCCC-CEE
Q 043172 377 LVSSKTKELIGTLKMNG---TVRSLAFADDGKQLLSSGGDGQVYHWDLRTRT-CIHRAV-DEGCINGTALCTSPDG-TFF 450 (564)
Q Consensus 377 lwd~~t~~~~~~~~~~~---~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~-~~~~~~-~~~~~~i~~l~~sp~g-~~l 450 (564)
+-|+.+.+.+..+.|+. .|+.+..+|..+.|++.+.++.|.+||.+... .+..+. ...+....++-|+|-. .+|
T Consensus 131 ~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li 210 (609)
T KOG4227|consen 131 KHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALI 210 (609)
T ss_pred eeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeE
Confidence 99999999999998654 89999999999999999999999999998755 222222 2233355778899864 588
Q ss_pred EEEeCCCcEEEEeCCcccCCcceeeEEc------cccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceecc-CC
Q 043172 451 AAGSDSGIVNVYNRQEFLGGKRKPIKTI------ENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSN-WP 523 (564)
Q Consensus 451 asgs~dg~V~iwd~~~~~~~~~~~~~~~------~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~-~~ 523 (564)
++.+..|-+.+||++... .++... ....+.-.++.|+|.|..|++--. ...-.+||+-+..++.. +.
T Consensus 211 ~~~~~~~G~~~~D~R~~~----~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR--~~~P~~~D~~S~R~~V~k~D 284 (609)
T KOG4227|consen 211 LVNSETGGPNVFDRRMQA----RPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR--GKCPLYFDFISQRCFVLKSD 284 (609)
T ss_pred EeccccCCCCceeecccc----chHHhhhccccCcccchhhhheeeCCCCCeehhhhc--cCCCEEeeeecccceeEecc
Confidence 899999999999998641 232221 111223356889999988776655 34556677766443221 11
Q ss_pred -CCCC--CCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCC
Q 043172 524 -PANR--NLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNH 560 (564)
Q Consensus 524 -~~~~--~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~ 560 (564)
...+ ....+.+++|.-+- .+++|+.+=.|++|.|..
T Consensus 285 ~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~ 323 (609)
T KOG4227|consen 285 HNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPR 323 (609)
T ss_pred CCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCC
Confidence 0111 12346678887664 489999999999999853
No 212
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.68 E-value=1.4e-15 Score=154.24 Aligned_cols=243 Identities=15% Similarity=0.190 Sum_probs=171.7
Q ss_pred EcCCCCEEEE--EeCCCcEEEEEecCCCCce---eEEEEeCCcCeEEEEEee-CCCEEEEEeCCCeEEEEECCCCceee-
Q 043172 270 FHRNAQLLLV--AGLDRRLRFFQIDGKRNTK---IQSIFLEDCPVRKASFLP-DGSQAIIAGRRKFFYSLDLVKAKADK- 342 (564)
Q Consensus 270 fspdg~~l~s--~s~dg~I~lwd~~~~~~~~---~~~~~~~~~~I~~l~fsp-dg~~l~s~~~dg~i~iwdl~~~~~~~- 342 (564)
|+.+..++|+ +|..|.|-||++....... +-.+ .....|+.+.|.| |...|++++.+|.|++|.+..+....
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l-~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~ 665 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGL-FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN 665 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCccccccc-ccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc
Confidence 4445555554 4567899999997432111 1122 2456799999999 88899999999999999988754321
Q ss_pred ----eccccccCCcceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEeCCCeE
Q 043172 343 ----IGPLVGREEKSLEFFEVSPD-SSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQV 416 (564)
Q Consensus 343 ----~~~~~~~~~~~v~~~~~spd-g~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~V 416 (564)
-..+..|.. .|.++.|+|- ...|++++.|.+|.+||+.++.....+. |.+.|.+++|+|+|+.+++.+.||+|
T Consensus 666 ~~tPe~~lt~h~e-KI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~ 744 (1012)
T KOG1445|consen 666 EMTPEKILTIHGE-KITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTL 744 (1012)
T ss_pred cCCcceeeecccc-eEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceE
Confidence 122445555 6999999994 6789999999999999999998888777 99999999999999999999999999
Q ss_pred EEEECCCCce-eEEEeecCCcceEEEEECCCCCEEEEEeCC----CcEEEEeCCcccCCcceeeEEccccc-cceeEEEE
Q 043172 417 YHWDLRTRTC-IHRAVDEGCINGTALCTSPDGTFFAAGSDS----GIVNVYNRQEFLGGKRKPIKTIENLT-TKVDFMKF 490 (564)
Q Consensus 417 ~lwD~~~~~~-~~~~~~~~~~~i~~l~~sp~g~~lasgs~d----g~V~iwd~~~~~~~~~~~~~~~~~~~-~~I~~l~f 490 (564)
++|..+++.. +..-....+.....|.|.-+|+++++.+.| ..|.+||.... ...++.+..-.. ..+.--.+
T Consensus 745 rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l---~~~pl~t~~lDvaps~LvP~Y 821 (1012)
T KOG1445|consen 745 RVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTL---DLRPLYTQVLDVAPSPLVPHY 821 (1012)
T ss_pred EEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhc---cCCcceeeeecccCccccccc
Confidence 9999987653 332222222344677888899988877654 46889998764 113444332111 11222345
Q ss_pred cCCCcEEEEEecCCCCeEEEEEcCCCce
Q 043172 491 NNDAQILAICSTMKKNSLKLIHIPSYNV 518 (564)
Q Consensus 491 spdg~~La~~s~~~d~~I~lwdl~s~~~ 518 (564)
.+|...|+..+.+ |..|.+|.+-....
T Consensus 822 D~Ds~~lfltGKG-D~~v~~yEv~~esP 848 (1012)
T KOG1445|consen 822 DYDSNVLFLTGKG-DRFVNMYEVIYESP 848 (1012)
T ss_pred cCCCceEEEecCC-CceEEEEEecCCCc
Confidence 5676666554443 89999999854443
No 213
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.67 E-value=3.9e-14 Score=134.07 Aligned_cols=283 Identities=12% Similarity=0.121 Sum_probs=198.3
Q ss_pred eecccCCCCC-----CCCeeEEEEcCCCCEEEEE-eCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEE-
Q 043172 252 LIDANADESS-----TGPINSVQFHRNAQLLLVA-GLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIA- 324 (564)
Q Consensus 252 l~~~~~~~~h-----~~~V~~l~fspdg~~l~s~-s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~- 324 (564)
+++.++.+-| -..|.-+.|..+.-+++++ ..++.|.+|++.. ..-...+.....++.+++|||+|+.|+..
T Consensus 33 iRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Q--pew~ckIdeg~agls~~~WSPdgrhiL~ts 110 (447)
T KOG4497|consen 33 IRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQ--PEWYCKIDEGQAGLSSISWSPDGRHILLTS 110 (447)
T ss_pred EeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeec--ceeEEEeccCCCcceeeeECCCcceEeeee
Confidence 3445554444 2568889999888766655 5688999999973 34556677778899999999999776655
Q ss_pred eCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCC--------------------------------
Q 043172 325 GRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNE-------------------------------- 372 (564)
Q Consensus 325 ~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-------------------------------- 372 (564)
..+-.|.||.+.+.+...+. +....+..++|+|+|++.+.++..
T Consensus 111 eF~lriTVWSL~t~~~~~~~----~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieW 186 (447)
T KOG4497|consen 111 EFDLRITVWSLNTQKGYLLP----HPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEW 186 (447)
T ss_pred cceeEEEEEEeccceeEEec----ccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceE
Confidence 46788999999998765432 222357889999999998887642
Q ss_pred ----CeEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEE-------------------
Q 043172 373 ----GYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHR------------------- 429 (564)
Q Consensus 373 ----g~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~------------------- 429 (564)
..+.+||.--.-.+..+.-.-.+..++|+|.+++|++|+.|+.+++.+--+-+....
T Consensus 187 sPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~ 266 (447)
T KOG4497|consen 187 SPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKET 266 (447)
T ss_pred CCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhh
Confidence 123333321111111122235788999999999999999999888755322111100
Q ss_pred -----------------------------------------Ee-----ecCCcceEEEEECCCCCEEEEEeC--CCcEEE
Q 043172 430 -----------------------------------------AV-----DEGCINGTALCTSPDGTFFAAGSD--SGIVNV 461 (564)
Q Consensus 430 -----------------------------------------~~-----~~~~~~i~~l~~sp~g~~lasgs~--dg~V~i 461 (564)
.. .....++.-++|++|..|+++-.. -..+.+
T Consensus 267 ~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~ 346 (447)
T KOG4497|consen 267 FSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWL 346 (447)
T ss_pred cchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEE
Confidence 00 011234567899999999988754 368999
Q ss_pred EeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCC
Q 043172 462 YNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGG 541 (564)
Q Consensus 462 wd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg 541 (564)
||++.. .++.+-....+|....|.|....|+++.+ ...+++|......++.+ |.. .-.|..+.|.-+|
T Consensus 347 Wdlq~l------~l~avLiQk~piraf~WdP~~prL~vctg--~srLY~W~psg~~~V~v-P~~---GF~i~~l~W~~~g 414 (447)
T KOG4497|consen 347 WDLQNL------KLHAVLIQKHPIRAFEWDPGRPRLVVCTG--KSRLYFWAPSGPRVVGV-PKK---GFNIQKLQWLQPG 414 (447)
T ss_pred Eechhh------hhhhhhhhccceeEEEeCCCCceEEEEcC--CceEEEEcCCCceEEec-CCC---CceeeeEEecCCC
Confidence 999974 45555456789999999999988988887 67899998876555542 221 1569999999999
Q ss_pred CEEEEEcCCCe
Q 043172 542 GFMAVGNAAGK 552 (564)
Q Consensus 542 ~~Lasgs~dG~ 552 (564)
.+++..+.|..
T Consensus 415 ~~i~l~~kDaf 425 (447)
T KOG4497|consen 415 EFIVLCGKDAF 425 (447)
T ss_pred cEEEEEcCCce
Confidence 99999998864
No 214
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=1.3e-14 Score=155.24 Aligned_cols=247 Identities=17% Similarity=0.185 Sum_probs=183.2
Q ss_pred cCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcC--CCCEEEEEeCCCeEEEEECC---
Q 043172 307 CPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSP--DSSVIAFVGNEGYILLVSSK--- 381 (564)
Q Consensus 307 ~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~sp--dg~~la~~~~dg~I~lwd~~--- 381 (564)
.+...+.|+|=...++++...-.|.|||.+.++...-..........|+.+.+-. |..++++|+.||.|+||+--
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence 3566788898888899988788999999999886433222222334678888765 46689999999999999642
Q ss_pred --CCcEEEEee--------ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEEC-CCCCEE
Q 043172 382 --TKELIGTLK--------MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTS-PDGTFF 450 (564)
Q Consensus 382 --t~~~~~~~~--------~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~s-p~g~~l 450 (564)
..+.+.... ..+.=.-+.|.....+|+++|.-..|+|||.....++..+.......++++.-+ +.|+.|
T Consensus 1145 ~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i 1224 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNII 1224 (1387)
T ss_pred cCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceE
Confidence 223333222 011114457777666777777788999999998888887776665566766544 347899
Q ss_pred EEEeCCCcEEEEeCCcccCCcceeeEEccccccc--eeEEEEcCCCcE-EEEEecCCCCeEEEEEcCCCceeccCCCCCC
Q 043172 451 AAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTK--VDFMKFNNDAQI-LAICSTMKKNSLKLIHIPSYNVFSNWPPANR 527 (564)
Q Consensus 451 asgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~--I~~l~fspdg~~-La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~ 527 (564)
++|..||.|++||.+.. ....++.....|... |..+.+.+.|-- |++||. +|.|++||++.. ...++.....
T Consensus 1225 ~AGfaDGsvRvyD~R~a--~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~--~G~I~~~DlR~~-~~e~~~~iv~ 1299 (1387)
T KOG1517|consen 1225 AAGFADGSVRVYDRRMA--PPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQ--DGDIQLLDLRMS-SKETFLTIVA 1299 (1387)
T ss_pred EEeecCCceEEeecccC--CccccceeecccCCcccceeEEeecCCCcceeeecc--CCeEEEEecccC-cccccceeee
Confidence 99999999999999986 333467777788877 999999997754 899998 999999999875 3333333333
Q ss_pred CC--C-CcEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q 043172 528 NL--Q-YPRCLDFSPGGGFMAVGNAAGKVFLYKLN 559 (564)
Q Consensus 528 ~~--~-~V~~l~fspdg~~Lasgs~dG~V~lw~l~ 559 (564)
|- | ..+++..+++...+|+|+. +.|.||++.
T Consensus 1300 ~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~ 1333 (1387)
T KOG1517|consen 1300 HWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS 1333 (1387)
T ss_pred ccccCccceeeeeccCCCeeeecCc-ceEEEEecC
Confidence 32 3 4899999999999999998 999999985
No 215
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=9.3e-15 Score=132.97 Aligned_cols=231 Identities=17% Similarity=0.209 Sum_probs=168.6
Q ss_pred CeEEEEEeeCCCEEEEEeCCCeEEEEECCCCc--------eeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 043172 308 PVRKASFLPDGSQAIIAGRRKFFYSLDLVKAK--------ADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVS 379 (564)
Q Consensus 308 ~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~--------~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd 379 (564)
.|.+-+|+|.+++|++|...|.|.+..+.+-. ..++....+|.. ++..++|. ..+|++++ ||.|+-|.
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdg-piy~~~f~--d~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDG-PIYYLAFH--DDFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCC-Ceeeeeee--hhheeecc-CceEEEee
Confidence 46667899999999999999999999886421 112333345554 89999998 44666665 49999997
Q ss_pred CCCCcE------EEEee---ec-----CcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECC
Q 043172 380 SKTKEL------IGTLK---MN-----GTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSP 445 (564)
Q Consensus 380 ~~t~~~------~~~~~---~~-----~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp 445 (564)
.+.... +.... +. -.|+++...|..+-++.++.|+.++.||+.+|+..+.+..+.. .+.+++.-.
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtD-YvH~vv~R~ 166 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTD-YVHSVVGRN 166 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcc-eeeeeeecc
Confidence 653322 11111 11 2588999999877788888999999999999999888886654 577777644
Q ss_pred CCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccc----------cccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCC
Q 043172 446 DGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIEN----------LTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPS 515 (564)
Q Consensus 446 ~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~----------~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s 515 (564)
....+.+|++||+++|||.++. +.+.++.. -..+|.+++- +..+|++|.+ -.+.||++++
T Consensus 167 ~~~qilsG~EDGtvRvWd~kt~-----k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgG---p~lslwhLrs 236 (325)
T KOG0649|consen 167 ANGQILSGAEDGTVRVWDTKTQ-----KHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGG---PKLSLWHLRS 236 (325)
T ss_pred cCcceeecCCCccEEEEecccc-----ceeEEeccccChhhcCcccCceeEEEec--cCceEEecCC---CceeEEeccC
Confidence 4457889999999999999997 66666542 1245666655 4568888775 5799999999
Q ss_pred CceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q 043172 516 YNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLN 559 (564)
Q Consensus 516 ~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~ 559 (564)
.++...+|.. ++|..+.|-. ..+++++....|.-|.++
T Consensus 237 se~t~vfpip----a~v~~v~F~~--d~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 237 SESTCVFPIP----ARVHLVDFVD--DCVLIGGEGNHVQSYTLN 274 (325)
T ss_pred CCceEEEecc----cceeEeeeec--ceEEEeccccceeeeeec
Confidence 9888877766 6688888865 456667767777777664
No 216
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.66 E-value=4.2e-13 Score=137.57 Aligned_cols=276 Identities=18% Similarity=0.273 Sum_probs=186.1
Q ss_pred EEEEeCC----CcEEEEEecCCCCce--eEEEEeCCcCeEEEEEeeCCCEEEEEeC----CCeEEEEECCC--Cceeeec
Q 043172 277 LLVAGLD----RRLRFFQIDGKRNTK--IQSIFLEDCPVRKASFLPDGSQAIIAGR----RKFFYSLDLVK--AKADKIG 344 (564)
Q Consensus 277 l~s~s~d----g~I~lwd~~~~~~~~--~~~~~~~~~~I~~l~fspdg~~l~s~~~----dg~i~iwdl~~--~~~~~~~ 344 (564)
+++|+.. +.|.+|.++...... +..+. .......++++|++++|+++.. .+.|..|.+.. +....+.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 4566665 789999996544332 23322 3445677999999999999876 46898888776 5555544
Q ss_pred cccccCCcceEEEEEcCCCCEEEEEeC-CCeEEEEECCC-CcEEEE---eee-----------cCcEEEEEEecCCCEEE
Q 043172 345 PLVGREEKSLEFFEVSPDSSVIAFVGN-EGYILLVSSKT-KELIGT---LKM-----------NGTVRSLAFADDGKQLL 408 (564)
Q Consensus 345 ~~~~~~~~~v~~~~~spdg~~la~~~~-dg~I~lwd~~t-~~~~~~---~~~-----------~~~V~~l~~spdg~~l~ 408 (564)
..... ......++++|++++|+++.. +|.|.++++.. +..... +.+ ...+.++.|+|++++|+
T Consensus 81 ~~~~~-g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~ 159 (345)
T PF10282_consen 81 SVPSG-GSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVY 159 (345)
T ss_dssp EEEES-SSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEE
T ss_pred eeccC-CCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEE
Confidence 44322 224668999999999998875 79999999986 433322 222 24578999999999888
Q ss_pred EEeC-CCeEEEEECCCCc--e--eEEEeecCCcceEEEEECCCCCEEEEEe-CCCcEEEEeCCcccCCcceeeEEcccc-
Q 043172 409 SSGG-DGQVYHWDLRTRT--C--IHRAVDEGCINGTALCTSPDGTFFAAGS-DSGIVNVYNRQEFLGGKRKPIKTIENL- 481 (564)
Q Consensus 409 s~s~-dg~V~lwD~~~~~--~--~~~~~~~~~~~i~~l~~sp~g~~lasgs-~dg~V~iwd~~~~~~~~~~~~~~~~~~- 481 (564)
+... ...|++|++.... . ...+..........++|+|+++++++.. .++.|.+|++.... ...+.+..+...
T Consensus 160 v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~-g~~~~~~~~~~~~ 238 (345)
T PF10282_consen 160 VPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSD-GSLTEIQTISTLP 238 (345)
T ss_dssp EEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT-TEEEEEEEEESCE
T ss_pred EEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccC-CceeEEEEeeecc
Confidence 8754 3579999997654 3 2233334444678999999999876655 57889999988211 122333333211
Q ss_pred -----ccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCC--C--ceeccCCCCCCCCCCcEEEEEeCCCCEEEEEc-CCC
Q 043172 482 -----TTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPS--Y--NVFSNWPPANRNLQYPRCLDFSPGGGFMAVGN-AAG 551 (564)
Q Consensus 482 -----~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s--~--~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs-~dG 551 (564)
......|+++|||++|+++... .+.|.+|++.. + +.+..+++. ....+.++|+|+|++|++++ .++
T Consensus 239 ~~~~~~~~~~~i~ispdg~~lyvsnr~-~~sI~vf~~d~~~g~l~~~~~~~~~---G~~Pr~~~~s~~g~~l~Va~~~s~ 314 (345)
T PF10282_consen 239 EGFTGENAPAEIAISPDGRFLYVSNRG-SNSISVFDLDPATGTLTLVQTVPTG---GKFPRHFAFSPDGRYLYVANQDSN 314 (345)
T ss_dssp TTSCSSSSEEEEEE-TTSSEEEEEECT-TTEEEEEEECTTTTTEEEEEEEEES---SSSEEEEEE-TTSSEEEEEETTTT
T ss_pred ccccccCCceeEEEecCCCEEEEEecc-CCEEEEEEEecCCCceEEEEEEeCC---CCCccEEEEeCCCCEEEEEecCCC
Confidence 1257789999999999998875 78999999932 3 233333332 23478999999999999887 667
Q ss_pred eEEEEEcC
Q 043172 552 KVFLYKLN 559 (564)
Q Consensus 552 ~V~lw~l~ 559 (564)
.|.+|+++
T Consensus 315 ~v~vf~~d 322 (345)
T PF10282_consen 315 TVSVFDID 322 (345)
T ss_dssp EEEEEEEE
T ss_pred eEEEEEEe
Confidence 89999875
No 217
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=3.1e-14 Score=150.63 Aligned_cols=236 Identities=19% Similarity=0.237 Sum_probs=160.8
Q ss_pred CcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeC---CCeEEEEECCCCceeeeccccccCCcceEEEEEc
Q 043172 284 RRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGR---RKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVS 360 (564)
Q Consensus 284 g~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~---dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~s 360 (564)
..|.+||.++.. ...+..+...+.+.+|+|+|+.|++++. ...|++|++.++....+....+ ....+.|+
T Consensus 184 ~~l~i~D~~g~~---~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g----~~~~~~~S 256 (433)
T PRK04922 184 YALQVADSDGYN---PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRG----INGAPSFS 256 (433)
T ss_pred EEEEEECCCCCC---ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCC----CccCceEC
Confidence 368888876542 3345556778999999999999998863 3479999999888755543332 24468999
Q ss_pred CCCCEEEEE-eCCC--eEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEEeC-CC--eEEEEECCCCceeEEEeecC
Q 043172 361 PDSSVIAFV-GNEG--YILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSGG-DG--QVYHWDLRTRTCIHRAVDEG 434 (564)
Q Consensus 361 pdg~~la~~-~~dg--~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s~-dg--~V~lwD~~~~~~~~~~~~~~ 434 (564)
|+|+.|++. +.+| .|++||+.+++......+......++|+|+|+.|+.++. +| .|+++++.+++... +...+
T Consensus 257 pDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g 335 (433)
T PRK04922 257 PDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQG 335 (433)
T ss_pred CCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCC
Confidence 999987654 4444 699999998876543335555678899999998887764 34 48888887766433 32222
Q ss_pred CcceEEEEECCCCCEEEEEeCCC---cEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCC-CCeEEE
Q 043172 435 CINGTALCTSPDGTFFAAGSDSG---IVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMK-KNSLKL 510 (564)
Q Consensus 435 ~~~i~~l~~sp~g~~lasgs~dg---~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~-d~~I~l 510 (564)
. ....++|+|+|++|+..+.++ .|.+|++.++ .+ ..+.. ......+.|+|||++|+..+... .+.|.+
T Consensus 336 ~-~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g-----~~-~~Lt~-~~~~~~p~~spdG~~i~~~s~~~g~~~L~~ 407 (433)
T PRK04922 336 N-YNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTG-----SV-RTLTP-GSLDESPSFAPNGSMVLYATREGGRGVLAA 407 (433)
T ss_pred C-CccCEEECCCCCEEEEEECCCCceeEEEEECCCC-----Ce-EECCC-CCCCCCceECCCCCEEEEEEecCCceEEEE
Confidence 2 234689999999998776443 5899998764 22 23332 22455679999999988877531 345777
Q ss_pred EEcCCCceeccCCCCCCCCCCcEEEEEeC
Q 043172 511 IHIPSYNVFSNWPPANRNLQYPRCLDFSP 539 (564)
Q Consensus 511 wdl~s~~~~~~~~~~~~~~~~V~~l~fsp 539 (564)
+++... ....++. +.+.+..++|||
T Consensus 408 ~~~~g~-~~~~l~~---~~g~~~~p~wsp 432 (433)
T PRK04922 408 VSTDGR-VRQRLVS---ADGEVREPAWSP 432 (433)
T ss_pred EECCCC-ceEEccc---CCCCCCCCccCC
Confidence 877543 3333332 235567778887
No 218
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=7.9e-14 Score=147.08 Aligned_cols=236 Identities=19% Similarity=0.236 Sum_probs=152.4
Q ss_pred cEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeC---CCeEEEEECCCCceeeeccccccCCcceEEEEEcC
Q 043172 285 RLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGR---RKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSP 361 (564)
Q Consensus 285 ~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~---dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~sp 361 (564)
.|.++|.++. ....+..+...+.+.+|+|+|+.|+.++. ...|++||+.+++...+....+ .+....|+|
T Consensus 177 ~L~~~D~dG~---~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g----~~~~~~~SP 249 (427)
T PRK02889 177 QLQISDADGQ---NAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKG----SNSAPAWSP 249 (427)
T ss_pred EEEEECCCCC---CceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCC----CccceEECC
Confidence 4666665543 23334456778999999999999988763 3469999999988755443332 345789999
Q ss_pred CCCEEEE-EeCCCe--EEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEEeC-CCeEEEE--ECCCCceeEEEeecCC
Q 043172 362 DSSVIAF-VGNEGY--ILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSGG-DGQVYHW--DLRTRTCIHRAVDEGC 435 (564)
Q Consensus 362 dg~~la~-~~~dg~--I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s~-dg~V~lw--D~~~~~~~~~~~~~~~ 435 (564)
+|+.|++ .+.+|. |+++|+.++.......+.+......|+|||+.|+..+. .|...+| ++.++... .+...+.
T Consensus 250 DG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~~g~ 328 (427)
T PRK02889 250 DGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTFTGS 328 (427)
T ss_pred CCCEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EEecCCC
Confidence 9998875 455665 55556665554332224555677899999998886654 3444444 55555432 2222222
Q ss_pred cceEEEEECCCCCEEEEEeCCC---cEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCC-CeEEEE
Q 043172 436 INGTALCTSPDGTFFAAGSDSG---IVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKK-NSLKLI 511 (564)
Q Consensus 436 ~~i~~l~~sp~g~~lasgs~dg---~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d-~~I~lw 511 (564)
.....+|+|+|++|+..+..+ .|.+||+..+ . ...+.. ......+.|+|||+.|+.++.... ..+.+.
T Consensus 329 -~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g-----~-~~~lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~ 400 (427)
T PRK02889 329 -YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATG-----Q-VTALTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAV 400 (427)
T ss_pred -CcCceEECCCCCEEEEEEccCCcEEEEEEECCCC-----C-eEEccC-CCCccCceECCCCCEEEEEEecCCCEEEEEE
Confidence 234678999999998877654 5999998875 2 223322 233467899999999998886422 235566
Q ss_pred EcCCCceeccCCCCCCCCCCcEEEEEeCC
Q 043172 512 HIPSYNVFSNWPPANRNLQYPRCLDFSPG 540 (564)
Q Consensus 512 dl~s~~~~~~~~~~~~~~~~V~~l~fspd 540 (564)
++ ++.....++. +.+.+...+|+|-
T Consensus 401 ~~-~g~~~~~l~~---~~g~~~~p~wsp~ 425 (427)
T PRK02889 401 SS-DGRIKQRLSV---QGGDVREPSWGPF 425 (427)
T ss_pred EC-CCCceEEeec---CCCCCCCCccCCC
Confidence 66 3444433332 3356777888873
No 219
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=4.5e-14 Score=148.87 Aligned_cols=217 Identities=17% Similarity=0.202 Sum_probs=153.8
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeC---CCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEe-CCC--eEEEE
Q 043172 260 SSTGPINSVQFHRNAQLLLVAGL---DRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAG-RRK--FFYSL 333 (564)
Q Consensus 260 ~h~~~V~~l~fspdg~~l~s~s~---dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~-~dg--~i~iw 333 (564)
.+...+.+.+|||||+.|+..+. +..|.+|++.++....+..+ ...+..++|+|||++|+... .++ .|++|
T Consensus 196 ~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~---~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~ 272 (429)
T PRK03629 196 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF---PRHNGAPAFSPDGSKLAFALSKTGSLNLYVM 272 (429)
T ss_pred cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCC---CCCcCCeEECCCCCEEEEEEcCCCCcEEEEE
Confidence 35678999999999999887653 35788898876543333333 33455789999999998763 343 59999
Q ss_pred ECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCC-C--eEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEE
Q 043172 334 DLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNE-G--YILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSS 410 (564)
Q Consensus 334 dl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-g--~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~ 410 (564)
|+.++...++. .... .+....|+|+|+.|++++.. + .|+++++.++...............+|+|+|++|+..
T Consensus 273 d~~tg~~~~lt---~~~~-~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~ 348 (429)
T PRK03629 273 DLASGQIRQVT---DGRS-NNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMV 348 (429)
T ss_pred ECCCCCEEEcc---CCCC-CcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEE
Confidence 99988765542 2222 46789999999999887764 3 5666687777654333344456788999999998876
Q ss_pred eCC---CeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCc---EEEEeCCcccCCcceeeEEccccccc
Q 043172 411 GGD---GQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGI---VNVYNRQEFLGGKRKPIKTIENLTTK 484 (564)
Q Consensus 411 s~d---g~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~---V~iwd~~~~~~~~~~~~~~~~~~~~~ 484 (564)
+.+ ..|++||+.++... .+.... ......|+|+|++|+.++.++. +.++++.. .....+..|.+.
T Consensus 349 ~~~~g~~~I~~~dl~~g~~~-~Lt~~~--~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G------~~~~~l~~~~~~ 419 (429)
T PRK03629 349 SSNGGQQHIAKQDLATGGVQ-VLTDTF--LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG------RFKARLPATDGQ 419 (429)
T ss_pred EccCCCceEEEEECCCCCeE-EeCCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCC------CCeEECccCCCC
Confidence 643 36899999887643 333222 2346789999999999887764 67777754 455666677788
Q ss_pred eeEEEEcC
Q 043172 485 VDFMKFNN 492 (564)
Q Consensus 485 I~~l~fsp 492 (564)
+...+|+|
T Consensus 420 ~~~p~Wsp 427 (429)
T PRK03629 420 VKFPAWSP 427 (429)
T ss_pred cCCcccCC
Confidence 88999987
No 220
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.63 E-value=5e-14 Score=153.00 Aligned_cols=261 Identities=13% Similarity=0.122 Sum_probs=181.3
Q ss_pred CCceeEEEEeCCcCeEEEEEeeC-CCEEEEEeCCCeEEEEECCCCc----eeeeccccccCCcceEEEEEcCCCCEEEEE
Q 043172 295 RNTKIQSIFLEDCPVRKASFLPD-GSQAIIAGRRKFFYSLDLVKAK----ADKIGPLVGREEKSLEFFEVSPDSSVIAFV 369 (564)
Q Consensus 295 ~~~~~~~~~~~~~~I~~l~fspd-g~~l~s~~~dg~i~iwdl~~~~----~~~~~~~~~~~~~~v~~~~~spdg~~la~~ 369 (564)
++..+..++.|...|..++.++. +.++++|+.||+|++|++..-. ..+....+......+.++.+.+.+..+|++
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~ 1116 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS 1116 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE
Confidence 34578888889999989888864 5999999999999999986421 111111122234578999999999999999
Q ss_pred eCCCeEEEEECCCC--cE-----EEEee--ecCcEEEE-EEec-CCC-EEEEEeCCCeEEEEECCCCceeEEEee--cCC
Q 043172 370 GNEGYILLVSSKTK--EL-----IGTLK--MNGTVRSL-AFAD-DGK-QLLSSGGDGQVYHWDLRTRTCIHRAVD--EGC 435 (564)
Q Consensus 370 ~~dg~I~lwd~~t~--~~-----~~~~~--~~~~V~~l-~~sp-dg~-~l~s~s~dg~V~lwD~~~~~~~~~~~~--~~~ 435 (564)
+.||.|.+.++... .. ..... ..+.+.++ +|.. .+. .|+.+...+.|..||+++.....+... .++
T Consensus 1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG 1196 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG 1196 (1431)
T ss_pred cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc
Confidence 99999999988652 11 11111 23444333 4433 233 788888899999999998765544432 233
Q ss_pred cceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEcc-ccccceeEEEEcCCC---cEEEEEecCCCCeEEEE
Q 043172 436 INGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIE-NLTTKVDFMKFNNDA---QILAICSTMKKNSLKLI 511 (564)
Q Consensus 436 ~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~-~~~~~I~~l~fspdg---~~La~~s~~~d~~I~lw 511 (564)
.+++++.+|.+.|+++|+..|.+.+||++-. .++..+. ++..+|..+..+|-. ...++++....+.|.+|
T Consensus 1197 -~vTSi~idp~~~WlviGts~G~l~lWDLRF~-----~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~w 1270 (1431)
T KOG1240|consen 1197 -LVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR-----VPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTW 1270 (1431)
T ss_pred -ceeEEEecCCceEEEEecCCceEEEEEeecC-----ceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeee
Confidence 5899999999999999999999999999976 6666653 456888888887743 45555554348899999
Q ss_pred EcCCCceeccCCCC-----------C-----CCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCCC
Q 043172 512 HIPSYNVFSNWPPA-----------N-----RNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNHY 561 (564)
Q Consensus 512 dl~s~~~~~~~~~~-----------~-----~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~~ 561 (564)
++.++.....+-.. . .+.-.....++...+.++.+|+.|+.|+.||....
T Consensus 1271 n~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1271 NMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred ecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 99877443222111 0 11111223344445678999999999999998654
No 221
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.62 E-value=1.7e-14 Score=144.19 Aligned_cols=209 Identities=17% Similarity=0.203 Sum_probs=158.8
Q ss_pred CEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcce
Q 043172 275 QLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSL 354 (564)
Q Consensus 275 ~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v 354 (564)
..|+.++.||.+.|.+-.+ ..-.++..|.+.|.+..|+|+|.-|+++|.||.|++|.-. |... ........+|
T Consensus 76 d~~~i~s~DGkf~il~k~~---rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GMLR---Stl~Q~~~~v 148 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSA---RVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GMLR---STVVQNEESI 148 (737)
T ss_pred ceEEEEcCCceEEEecccc---hhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-chHH---HHHhhcCcee
Confidence 4677888899988875443 3455677899999999999999999999999999999854 4321 1222233489
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeec
Q 043172 355 EFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDE 433 (564)
Q Consensus 355 ~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~ 433 (564)
.|++|.|+.+.++.+ ..+.+.|=.+.....+-..+ |.+-|.++.|+|....+++|+.|-..++||.. |..+..-. .
T Consensus 149 ~c~~W~p~S~~vl~c-~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~-~ 225 (737)
T KOG1524|consen 149 RCARWAPNSNSIVFC-QGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSA-A 225 (737)
T ss_pred EEEEECCCCCceEEe-cCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCC-h
Confidence 999999998877765 34677777766555444455 99999999999999999999999999999976 55544333 3
Q ss_pred CCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEc
Q 043172 434 GCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHI 513 (564)
Q Consensus 434 ~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl 513 (564)
+..+|++++|.|+ ..++.||.. +++ +. ....+.|..++||+||..+++|+. .|.+.+-++
T Consensus 226 ~ey~ITSva~npd-~~~~v~S~n-t~R---~~-------------~p~~GSifnlsWS~DGTQ~a~gt~--~G~v~~A~~ 285 (737)
T KOG1524|consen 226 EEYAITSVAFNPE-KDYLLWSYN-TAR---FS-------------SPRVGSIFNLSWSADGTQATCGTS--TGQLIVAYA 285 (737)
T ss_pred hccceeeeeeccc-cceeeeeee-eee---ec-------------CCCccceEEEEEcCCCceeecccc--CceEEEeee
Confidence 4558999999999 677777654 333 11 224678999999999999999988 777766554
No 222
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=5.7e-14 Score=136.02 Aligned_cols=265 Identities=13% Similarity=0.129 Sum_probs=192.1
Q ss_pred CCCCCeeEEEEcCCCC--EEEEEeCCCcEEEEEecCCCCce----eEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEE
Q 043172 260 SSTGPINSVQFHRNAQ--LLLVAGLDRRLRFFQIDGKRNTK----IQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSL 333 (564)
Q Consensus 260 ~h~~~V~~l~fspdg~--~l~s~s~dg~I~lwd~~~~~~~~----~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iw 333 (564)
.-...|++++|.-+++ .|...+.+..+..+.+....... +....+...+|..++.. + ..|++|-.+|.+.+|
T Consensus 53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-d-g~Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-D-GTLITCVSSGNLQVR 130 (412)
T ss_pred chhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-C-CEEEEEecCCcEEEE
Confidence 3456788888886554 55555567777777664322111 12344556677777664 3 377788889999999
Q ss_pred ECCCCce--eeeccccccCCcceEEEEEcCCCC-EEEEEeCC--CeEEEEECCCCcEEEEee----------ecCcEEEE
Q 043172 334 DLVKAKA--DKIGPLVGREEKSLEFFEVSPDSS-VIAFVGNE--GYILLVSSKTKELIGTLK----------MNGTVRSL 398 (564)
Q Consensus 334 dl~~~~~--~~~~~~~~~~~~~v~~~~~spdg~-~la~~~~d--g~I~lwd~~t~~~~~~~~----------~~~~V~~l 398 (564)
....+.. .+...+..+ ..+..+.-++... ++|+||.. ..+.+||+.+.+.+..-+ .+-.++++
T Consensus 131 ~~k~~d~hss~l~~la~g--~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi 208 (412)
T KOG3881|consen 131 HDKSGDLHSSKLIKLATG--PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDI 208 (412)
T ss_pred eccCCccccccceeeecC--CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccc
Confidence 9885541 111112222 2456666666544 55668888 889999999887766554 23357889
Q ss_pred EEecC--CCEEEEEeCCCeEEEEECCCC-ceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceee
Q 043172 399 AFADD--GKQLLSSGGDGQVYHWDLRTR-TCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPI 475 (564)
Q Consensus 399 ~~spd--g~~l~s~s~dg~V~lwD~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~ 475 (564)
.|.+. ...|++++.-+.|++||.+.+ +++..|... ..+++++...|.+++|++|..-|.+..||++.+ +.+
T Consensus 209 ~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~-E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~-----kl~ 282 (412)
T KOG3881|consen 209 RFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFL-ENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGG-----KLL 282 (412)
T ss_pred eecCCCCCceEEEEecceeEEEecCcccCcceeEeccc-cCcceeeeecCCCcEEEEecccchhheecccCc-----eee
Confidence 99987 789999999999999999875 455555443 347899999999999999999999999999987 555
Q ss_pred EE-ccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCC
Q 043172 476 KT-IENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPG 540 (564)
Q Consensus 476 ~~-~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspd 540 (564)
.. +.+..+.|++|..+|.+++||+++- |..|||+|+.+..++...... ..++++-+.++
T Consensus 283 g~~~kg~tGsirsih~hp~~~~las~GL--DRyvRIhD~ktrkll~kvYvK----s~lt~il~~~~ 342 (412)
T KOG3881|consen 283 GCGLKGITGSIRSIHCHPTHPVLASCGL--DRYVRIHDIKTRKLLHKVYVK----SRLTFILLRDD 342 (412)
T ss_pred ccccCCccCCcceEEEcCCCceEEeecc--ceeEEEeecccchhhhhhhhh----ccccEEEecCC
Confidence 55 8889999999999999999999999 999999999986665543322 45677777654
No 223
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=8.3e-15 Score=146.80 Aligned_cols=124 Identities=15% Similarity=0.207 Sum_probs=91.5
Q ss_pred cCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEE-EeCCcCeEEEEEee--CCCEEEEEeCCCeEEE
Q 043172 256 NADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSI-FLEDCPVRKASFLP--DGSQAIIAGRRKFFYS 332 (564)
Q Consensus 256 ~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~-~~~~~~I~~l~fsp--dg~~l~s~~~dg~i~i 332 (564)
....||++.|+|+.|+.+|.+|++||.|-.+.|||.- ..+++.++ .+|...|.++.|-| +...+++|..|..|++
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~--~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPF--EYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecch--hcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 3467899999999999999999999999999999987 44455555 47899999999998 4567788889999999
Q ss_pred EECCCCce--------eeeccccccCCcceEEEEEcCCC-CEEEEEeCCCeEEEEECCC
Q 043172 333 LDLVKAKA--------DKIGPLVGREEKSLEFFEVSPDS-SVIAFVGNEGYILLVSSKT 382 (564)
Q Consensus 333 wdl~~~~~--------~~~~~~~~~~~~~v~~~~~spdg-~~la~~~~dg~I~lwd~~t 382 (564)
+|+...+. ..+. ....+...|..++..|++ +.+.+++.||+|+-+|++.
T Consensus 122 fdl~~~~~~~~d~~~~~~~~-~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiRE 179 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTR-CWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE 179 (758)
T ss_pred EecccccccccccCccchhh-hhhhhhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence 99985221 1111 122222345666666665 5666666677777776654
No 224
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.61 E-value=2.1e-12 Score=132.40 Aligned_cols=254 Identities=17% Similarity=0.197 Sum_probs=174.7
Q ss_pred CCeeEEEEcCCCCEEEEEeC----CCcEEEEEecCC--CCceeEEEEeCCcCeEEEEEeeCCCEEEEEe-CCCeEEEEEC
Q 043172 263 GPINSVQFHRNAQLLLVAGL----DRRLRFFQIDGK--RNTKIQSIFLEDCPVRKASFLPDGSQAIIAG-RRKFFYSLDL 335 (564)
Q Consensus 263 ~~V~~l~fspdg~~l~s~s~----dg~I~lwd~~~~--~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~-~dg~i~iwdl 335 (564)
...+.|+++|++++|+++.. .+.|..|.++.. ....+............++++|++++|+++. ..+.|.++++
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l 116 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL 116 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence 45677999999999999876 579999999864 3344555554455667899999999999987 5899999999
Q ss_pred CC-Cceeeecccc----------ccCCcceEEEEEcCCCCEEEEEeC-CCeEEEEECCCCc--EEE--Eee--ecCcEEE
Q 043172 336 VK-AKADKIGPLV----------GREEKSLEFFEVSPDSSVIAFVGN-EGYILLVSSKTKE--LIG--TLK--MNGTVRS 397 (564)
Q Consensus 336 ~~-~~~~~~~~~~----------~~~~~~v~~~~~spdg~~la~~~~-dg~I~lwd~~t~~--~~~--~~~--~~~~V~~ 397 (564)
.. +......... ........++.++|+|+++++... ...|.+|++.... +.. .+. .....+.
T Consensus 117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh 196 (345)
T PF10282_consen 117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRH 196 (345)
T ss_dssp CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEE
T ss_pred cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcE
Confidence 87 4443322111 112235789999999999888754 3579999987654 322 222 4567899
Q ss_pred EEEecCCCEEEEEeC-CCeEEEEECC--CCce--eEEEee-----cCCcceEEEEECCCCCEEEEEe-CCCcEEEEeCCc
Q 043172 398 LAFADDGKQLLSSGG-DGQVYHWDLR--TRTC--IHRAVD-----EGCINGTALCTSPDGTFFAAGS-DSGIVNVYNRQE 466 (564)
Q Consensus 398 l~~spdg~~l~s~s~-dg~V~lwD~~--~~~~--~~~~~~-----~~~~~i~~l~~sp~g~~lasgs-~dg~V~iwd~~~ 466 (564)
++|+|+++++++... +++|.+|++. .+.. +..+.. .+......|+++|+|++|++.. ..+.|.+|++..
T Consensus 197 ~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~ 276 (345)
T PF10282_consen 197 LAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDP 276 (345)
T ss_dssp EEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECT
T ss_pred EEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEec
Confidence 999999998877765 6789999988 3432 222221 1112467899999999887765 467899999943
Q ss_pred ccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcC--CCce
Q 043172 467 FLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIP--SYNV 518 (564)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~--s~~~ 518 (564)
. .+..+.+..+.........++++|+|++|+++... .+.|.+|++. ++.+
T Consensus 277 ~-~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~-s~~v~vf~~d~~tG~l 328 (345)
T PF10282_consen 277 A-TGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQD-SNTVSVFDIDPDTGKL 328 (345)
T ss_dssp T-TTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETT-TTEEEEEEEETTTTEE
T ss_pred C-CCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecC-CCeEEEEEEeCCCCcE
Confidence 1 12335555555445568899999999999998875 7889999874 5543
No 225
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.61 E-value=1.1e-12 Score=124.07 Aligned_cols=233 Identities=17% Similarity=0.212 Sum_probs=158.8
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCC--cCeEEEEEeeCCCEEEEEe-CC------CeEEEEE
Q 043172 264 PINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLED--CPVRKASFLPDGSQAIIAG-RR------KFFYSLD 334 (564)
Q Consensus 264 ~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~--~~I~~l~fspdg~~l~s~~-~d------g~i~iwd 334 (564)
...+++|+.|...+++|..+| .+||+++.-. ...+...+. ..+.-+-| -.++|+..| .. ..+.|||
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~k--e~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWD 81 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFK--ESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWD 81 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchh--hhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEe
Confidence 455699999999999887555 9999987522 211111122 22223333 234555443 22 3699999
Q ss_pred CCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECC-CCcEEEEee---ecCcEEEEEEecCCCEEEEE
Q 043172 335 LVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSK-TKELIGTLK---MNGTVRSLAFADDGKQLLSS 410 (564)
Q Consensus 335 l~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~-t~~~~~~~~---~~~~V~~l~~spdg~~l~s~ 410 (564)
=....+.. .+.-. .+|..+.++++ .|++. ..+.|+||... ..+.++.+. .+..+.+++-+.+..+|+.-
T Consensus 82 D~k~~~i~--el~f~--~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafP 154 (346)
T KOG2111|consen 82 DLKERCII--ELSFN--SEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFP 154 (346)
T ss_pred cccCcEEE--EEEec--cceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcC
Confidence 55444432 22222 26889999865 44444 35889999987 556666665 23344444444444555554
Q ss_pred e-CCCeEEEEECCCCce-eEEEeecCCcceEEEEECCCCCEEEEEeCCCc-EEEEeCCcccCCcceeeEEccc--cccce
Q 043172 411 G-GDGQVYHWDLRTRTC-IHRAVDEGCINGTALCTSPDGTFFAAGSDSGI-VNVYNRQEFLGGKRKPIKTIEN--LTTKV 485 (564)
Q Consensus 411 s-~dg~V~lwD~~~~~~-~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~-V~iwd~~~~~~~~~~~~~~~~~--~~~~I 485 (564)
| .-|.|+|-|+...+. ...+...|...|.|++++.+|..+|++|..|+ |+|||..++ .++..+.. ....|
T Consensus 155 g~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g-----~~l~E~RRG~d~A~i 229 (346)
T KOG2111|consen 155 GFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDG-----TLLQELRRGVDRADI 229 (346)
T ss_pred CCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCC-----cEeeeeecCCchheE
Confidence 4 358999999987655 12333455568999999999999999999996 799999998 77777753 34689
Q ss_pred eEEEEcCCCcEEEEEecCCCCeEEEEEcCC
Q 043172 486 DFMKFNNDAQILAICSTMKKNSLKLIHIPS 515 (564)
Q Consensus 486 ~~l~fspdg~~La~~s~~~d~~I~lwdl~s 515 (564)
.+|+|||++.+||++|. .|+|+|+.+..
T Consensus 230 y~iaFSp~~s~LavsSd--KgTlHiF~l~~ 257 (346)
T KOG2111|consen 230 YCIAFSPNSSWLAVSSD--KGTLHIFSLRD 257 (346)
T ss_pred EEEEeCCCccEEEEEcC--CCeEEEEEeec
Confidence 99999999999999998 89999999864
No 226
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.60 E-value=5.5e-12 Score=122.06 Aligned_cols=275 Identities=14% Similarity=0.212 Sum_probs=188.9
Q ss_pred CCcEEEEEecCCCCce-eEEEEeCCcCeEEEEEeeCCCEEEEEeC---CCeEEEEECC--CCceeeeccccccCCcceEE
Q 043172 283 DRRLRFFQIDGKRNTK-IQSIFLEDCPVRKASFLPDGSQAIIAGR---RKFFYSLDLV--KAKADKIGPLVGREEKSLEF 356 (564)
Q Consensus 283 dg~I~lwd~~~~~~~~-~~~~~~~~~~I~~l~fspdg~~l~s~~~---dg~i~iwdl~--~~~~~~~~~~~~~~~~~v~~ 356 (564)
+.-|.+|++++.+... ...+-.....++-++|+|+++.|+++.. .|.|..|.+. +|....+........ +...
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~-~p~y 93 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGS-PPCY 93 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCC-CCeE
Confidence 5679999998544332 1222335567789999999999998864 4666666555 366655443333222 3478
Q ss_pred EEEcCCCCEEEEEeC-CCeEEEEECCC-Cc---EEEEeeecCc----------EEEEEEecCCCEEEEEeC-CCeEEEEE
Q 043172 357 FEVSPDSSVIAFVGN-EGYILLVSSKT-KE---LIGTLKMNGT----------VRSLAFADDGKQLLSSGG-DGQVYHWD 420 (564)
Q Consensus 357 ~~~spdg~~la~~~~-dg~I~lwd~~t-~~---~~~~~~~~~~----------V~~l~~spdg~~l~s~s~-dg~V~lwD 420 (564)
++++++|++++++.. .|.|.++-++. |. .+..+.|.+. +....+.|++++|++... --.|.+|+
T Consensus 94 vsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~ 173 (346)
T COG2706 94 VSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYD 173 (346)
T ss_pred EEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEE
Confidence 999999999998875 48999999865 43 3344556655 889999999999988754 23799999
Q ss_pred CCCCceeEEE--eecCCcceEEEEECCCCCEEEEEeC-CCcEEEEeCCcccCCcceeeEEccc------cccceeEEEEc
Q 043172 421 LRTRTCIHRA--VDEGCINGTALCTSPDGTFFAAGSD-SGIVNVYNRQEFLGGKRKPIKTIEN------LTTKVDFMKFN 491 (564)
Q Consensus 421 ~~~~~~~~~~--~~~~~~~i~~l~~sp~g~~lasgs~-dg~V~iwd~~~~~~~~~~~~~~~~~------~~~~I~~l~fs 491 (564)
+..+.....- ....+.+...|.|+|++++..+.++ +++|.+|..... .+....+.++.. ...+...|..+
T Consensus 174 ~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~-~g~~~~lQ~i~tlP~dF~g~~~~aaIhis 252 (346)
T COG2706 174 LDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA-VGKFEELQTIDTLPEDFTGTNWAAAIHIS 252 (346)
T ss_pred cccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC-CceEEEeeeeccCccccCCCCceeEEEEC
Confidence 9976643211 1123345689999999998877765 889999998864 122233333321 23567789999
Q ss_pred CCCcEEEEEecCCCCeEEEEEcCCC-ceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCC-CeEEEEEcCC
Q 043172 492 NDAQILAICSTMKKNSLKLIHIPSY-NVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAA-GKVFLYKLNH 560 (564)
Q Consensus 492 pdg~~La~~s~~~d~~I~lwdl~s~-~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~d-G~V~lw~l~~ 560 (564)
|||++|.++... .+.|-+|.+... ..+........+......+.|+|.|++|++++.+ ..|.+|.+..
T Consensus 253 ~dGrFLYasNRg-~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 253 PDGRFLYASNRG-HDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDK 322 (346)
T ss_pred CCCCEEEEecCC-CCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence 999999998876 568999988543 2222211222222447889999999999998854 4688888753
No 227
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.60 E-value=1.5e-12 Score=133.60 Aligned_cols=270 Identities=14% Similarity=0.150 Sum_probs=171.6
Q ss_pred CEE-EEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcc
Q 043172 275 QLL-LVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKS 353 (564)
Q Consensus 275 ~~l-~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~ 353 (564)
+++ ++-..++.|.+.|.. +...+..+.........+.|+|||++++++++++.|.++|+.+++.... +.... .
T Consensus 6 ~l~~V~~~~~~~v~viD~~--t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~--i~~G~--~ 79 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGA--TNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVAT--IKVGG--N 79 (369)
T ss_dssp GEEEEEEGGGTEEEEEETT--T-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEE--EE-SS--E
T ss_pred cEEEEEecCCCEEEEEECC--CCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEE--EecCC--C
Confidence 344 445568999999766 5567788876554445578999999999999999999999999987544 32222 4
Q ss_pred eEEEEEcCCCCEEEEEe-CCCeEEEEECCCCcEEEEeee--------cCcEEEEEEecCCCEEEEEeC-CCeEEEEECCC
Q 043172 354 LEFFEVSPDSSVIAFVG-NEGYILLVSSKTKELIGTLKM--------NGTVRSLAFADDGKQLLSSGG-DGQVYHWDLRT 423 (564)
Q Consensus 354 v~~~~~spdg~~la~~~-~dg~I~lwd~~t~~~~~~~~~--------~~~V~~l~~spdg~~l~s~s~-dg~V~lwD~~~ 423 (564)
..++++|++|+++++++ ..+.+.++|..+.+.+..+.. ...+.++..+|....+++.-. .+.|.+.|...
T Consensus 80 ~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 80 PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD 159 (369)
T ss_dssp EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred cceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence 67899999999998876 579999999999999988762 236788888888875555544 58999999877
Q ss_pred CceeEEEeecCCcceEEEEECCCCCEEEEE-eCCCcEEEEeCCcccCCcceeeEEcc----ccccceeEE-------EE-
Q 043172 424 RTCIHRAVDEGCINGTALCTSPDGTFFAAG-SDSGIVNVYNRQEFLGGKRKPIKTIE----NLTTKVDFM-------KF- 490 (564)
Q Consensus 424 ~~~~~~~~~~~~~~i~~l~~sp~g~~lasg-s~dg~V~iwd~~~~~~~~~~~~~~~~----~~~~~I~~l-------~f- 490 (564)
.+.+..-............|+|+++|++++ ..+..|.++|..+. +.+..+. .|..++..+ .|
T Consensus 160 ~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~-----k~v~~i~~g~~p~~~~~~~~php~~g~vw~ 234 (369)
T PF02239_consen 160 PKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG-----KLVALIDTGKKPHPGPGANFPHPGFGPVWA 234 (369)
T ss_dssp SSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT-----EEEEEEE-SSSBEETTEEEEEETTTEEEEE
T ss_pred ccccceeeecccccccccccCcccceeeecccccceeEEEeeccc-----eEEEEeeccccccccccccccCCCcceEEe
Confidence 654432222222245678999999987765 45678999998876 4444332 122222222 12
Q ss_pred -cCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEE----cCCCeEEEEEcCCC
Q 043172 491 -NNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVG----NAAGKVFLYKLNHY 561 (564)
Q Consensus 491 -spdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasg----s~dG~V~lw~l~~~ 561 (564)
...+...++.-+ .+.+.+|+..+.++++.++... ....+..+|++++|++. ...+.|.++|..+.
T Consensus 235 ~~~~~~~~~~~ig--~~~v~v~d~~~wkvv~~I~~~G----~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl 304 (369)
T PF02239_consen 235 TSGLGYFAIPLIG--TDPVSVHDDYAWKVVKTIPTQG----GGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTL 304 (369)
T ss_dssp EEBSSSSEEEEEE----TTT-STTTBTSEEEEEE-SS----SS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGT
T ss_pred eccccceeccccc--CCccccchhhcCeEEEEEECCC----CcceeecCCCCccEEeeccCCCCCceEEEEECcCc
Confidence 122333322222 3456678888888888877653 22567889999999988 45688999998875
No 228
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=2.1e-13 Score=144.33 Aligned_cols=217 Identities=15% Similarity=0.176 Sum_probs=150.3
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCC---CcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEE-eCCC--eEEEE
Q 043172 260 SSTGPINSVQFHRNAQLLLVAGLD---RRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIA-GRRK--FFYSL 333 (564)
Q Consensus 260 ~h~~~V~~l~fspdg~~l~s~s~d---g~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~-~~dg--~i~iw 333 (564)
.|...|.+.+|+|+|+.|+.++.. ..|.+|++.++....+ ....+...+++|+|+|+.|+.. +.++ .|++|
T Consensus 201 ~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l---~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~ 277 (433)
T PRK04922 201 RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELV---ASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVM 277 (433)
T ss_pred cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe---ccCCCCccCceECCCCCEEEEEEeCCCCceEEEE
Confidence 466789999999999999888743 4699999876543332 2334455678999999988654 4444 69999
Q ss_pred ECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeC-CC--eEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEE
Q 043172 334 DLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGN-EG--YILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSS 410 (564)
Q Consensus 334 dl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~-dg--~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~ 410 (564)
|+.++...++ ..+.. ....++|+|+|+.|++++. .| .|+++++.+++.............++|+|+|++|+..
T Consensus 278 d~~~g~~~~l---t~~~~-~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~ 353 (433)
T PRK04922 278 DLGSRQLTRL---TNHFG-IDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMV 353 (433)
T ss_pred ECCCCCeEEC---ccCCC-CccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEE
Confidence 9998876543 22222 3456899999999988764 33 4777888777654433333445578999999999877
Q ss_pred eCCC---eEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCC---CcEEEEeCCcccCCcceeeEEccccccc
Q 043172 411 GGDG---QVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDS---GIVNVYNRQEFLGGKRKPIKTIENLTTK 484 (564)
Q Consensus 411 s~dg---~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~d---g~V~iwd~~~~~~~~~~~~~~~~~~~~~ 484 (564)
+.++ .|++||+.++... .+.... ......|+|+|++|+..+.. +.|.++++.. .....+..+.+.
T Consensus 354 ~~~~~~~~I~v~d~~~g~~~-~Lt~~~--~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g------~~~~~l~~~~g~ 424 (433)
T PRK04922 354 HGSGGQYRIAVMDLSTGSVR-TLTPGS--LDESPSFAPNGSMVLYATREGGRGVLAAVSTDG------RVRQRLVSADGE 424 (433)
T ss_pred ECCCCceeEEEEECCCCCeE-ECCCCC--CCCCceECCCCCEEEEEEecCCceEEEEEECCC------CceEEcccCCCC
Confidence 5443 6999999887654 333222 23467899999988877653 3577777754 344455545566
Q ss_pred eeEEEEcC
Q 043172 485 VDFMKFNN 492 (564)
Q Consensus 485 I~~l~fsp 492 (564)
+..++|+|
T Consensus 425 ~~~p~wsp 432 (433)
T PRK04922 425 VREPAWSP 432 (433)
T ss_pred CCCCccCC
Confidence 77788876
No 229
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=7.5e-13 Score=140.23 Aligned_cols=216 Identities=19% Similarity=0.195 Sum_probs=148.3
Q ss_pred CeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeC---CCeEEEEECCCCcEEEEeeecCcEEEEEEecCC
Q 043172 328 KFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGN---EGYILLVSSKTKELIGTLKMNGTVRSLAFADDG 404 (564)
Q Consensus 328 g~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~---dg~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg 404 (564)
..|++||..+..... +..+. ..+.+.+|+|||+.|++.+. +..|++||+.+++......+.+.+.+.+|+|+|
T Consensus 182 ~~l~~~d~dg~~~~~---lt~~~-~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG 257 (435)
T PRK05137 182 KRLAIMDQDGANVRY---LTDGS-SLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDG 257 (435)
T ss_pred eEEEEECCCCCCcEE---EecCC-CCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCC
Confidence 478999987665433 33333 36889999999999988764 468999999988765444466778899999999
Q ss_pred CEEE-EEeCCC--eEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeC-CC--cEEEEeCCcccCCcceeeEEc
Q 043172 405 KQLL-SSGGDG--QVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSD-SG--IVNVYNRQEFLGGKRKPIKTI 478 (564)
Q Consensus 405 ~~l~-s~s~dg--~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~-dg--~V~iwd~~~~~~~~~~~~~~~ 478 (564)
+.|+ +.+.++ .|++||+.++... .+..... .....+|+|+|++|+..+. +| .|++||+... ....+
T Consensus 258 ~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~-~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~------~~~~l 329 (435)
T PRK05137 258 RKVVMSLSQGGNTDIYTMDLRSGTTT-RLTDSPA-IDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS------NPRRI 329 (435)
T ss_pred CEEEEEEecCCCceEEEEECCCCceE-EccCCCC-ccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC------CeEEe
Confidence 8776 444444 5888899877654 3433322 3467899999999887764 33 5777787653 22333
Q ss_pred cccccceeEEEEcCCCcEEEEEecCC-CCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCC------C
Q 043172 479 ENLTTKVDFMKFNNDAQILAICSTMK-KNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAA------G 551 (564)
Q Consensus 479 ~~~~~~I~~l~fspdg~~La~~s~~~-d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~d------G 551 (564)
......+..+.|+|+|++|++.+... ...|.+|++.++.. ..+... ..+..+.|+|||++|+..+.+ .
T Consensus 330 t~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~~----~~~~~p~~spDG~~i~~~~~~~~~~~~~ 404 (435)
T PRK05137 330 SFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTSG----FLVEGPTWAPNGRVIMFFRQTPGSGGAP 404 (435)
T ss_pred ecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccCC----CCCCCCeECCCCCEEEEEEccCCCCCcc
Confidence 33345567789999999999877531 24688888765443 222211 246778999999998765432 2
Q ss_pred eEEEEEcCC
Q 043172 552 KVFLYKLNH 560 (564)
Q Consensus 552 ~V~lw~l~~ 560 (564)
.++++++..
T Consensus 405 ~L~~~dl~g 413 (435)
T PRK05137 405 KLYTVDLTG 413 (435)
T ss_pred eEEEEECCC
Confidence 577777654
No 230
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=2.1e-13 Score=130.76 Aligned_cols=230 Identities=17% Similarity=0.199 Sum_probs=159.2
Q ss_pred CeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCC-CEEEEEeCCCeEEEEECCCC---
Q 043172 308 PVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDS-SVIAFVGNEGYILLVSSKTK--- 383 (564)
Q Consensus 308 ~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg-~~la~~~~dg~I~lwd~~t~--- 383 (564)
.+..++|++.-..++++..|-.|++|+-....... +.....+.|.+++|.|.+ ..|++|+. +-|.+|.....
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~---Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~ 175 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTK---LKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNA 175 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCCCCCce---ecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCccccc
Confidence 46678888866677888899999999987733322 333334579999999964 56777766 55899976421
Q ss_pred -c--------EEEEeee--cCcEEEEEEecCCCEEEEEeC-CCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEE
Q 043172 384 -E--------LIGTLKM--NGTVRSLAFADDGKQLLSSGG-DGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFA 451 (564)
Q Consensus 384 -~--------~~~~~~~--~~~V~~l~~spdg~~l~s~s~-dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~la 451 (564)
. ....+++ ..+|+++.|.+||..+++++. +..|.|||+.++.++.... .+..+++-+.|||+|.+|.
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~-~glgg~slLkwSPdgd~lf 254 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIP-KGLGGFSLLKWSPDGDVLF 254 (445)
T ss_pred ccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccc-cCCCceeeEEEcCCCCEEE
Confidence 1 1122332 358999999999999998876 6789999999988765442 3333577899999999999
Q ss_pred EEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCC--Cce-----------
Q 043172 452 AGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPS--YNV----------- 518 (564)
Q Consensus 452 sgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s--~~~----------- 518 (564)
+++-|+..++|..... ....+-..+ .+.|....|+|.|++|+.++. +.-+||.+.. ...
T Consensus 255 aAt~davfrlw~e~q~----wt~erw~lg-sgrvqtacWspcGsfLLf~~s---gsp~lysl~f~~~~~~~~~~~~~k~~ 326 (445)
T KOG2139|consen 255 AATCDAVFRLWQENQS----WTKERWILG-SGRVQTACWSPCGSFLLFACS---GSPRLYSLTFDGEDSVFLRPQSIKRV 326 (445)
T ss_pred Eecccceeeeehhccc----ceecceecc-CCceeeeeecCCCCEEEEEEc---CCceEEEEeecCCCccccCcccceee
Confidence 9999999999955432 133333332 348999999999999888775 4445554421 100
Q ss_pred --eccCCC--CCC----CCCCcEEEEEeCCCCEEEEEcCC
Q 043172 519 --FSNWPP--ANR----NLQYPRCLDFSPGGGFMAVGNAA 550 (564)
Q Consensus 519 --~~~~~~--~~~----~~~~V~~l~fspdg~~Lasgs~d 550 (564)
+..++. ... -.+.+.+++|.|.|.|||+.-..
T Consensus 327 lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg 366 (445)
T KOG2139|consen 327 LLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKG 366 (445)
T ss_pred eeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcC
Confidence 000000 011 24678999999999999986543
No 231
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=1.9e-12 Score=130.89 Aligned_cols=274 Identities=13% Similarity=0.174 Sum_probs=177.7
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEe----------CCCeEE
Q 043172 262 TGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAG----------RRKFFY 331 (564)
Q Consensus 262 ~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~----------~dg~i~ 331 (564)
..+++..+++++|++++.+. +..++|++..... .+.+... ..++++.|+|.|++|.+-- ....+.
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~--~~lt~~~--~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~ 108 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLK--VVLCVEL--KKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVL 108 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCc--EEEEecc--ceeeeeeecccccccccccccccccCCCCCCCcee
Confidence 34578899999999888874 6779999876432 3333322 2789999999999987631 124578
Q ss_pred EEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeeecCcEEEEEEecCC--CEEEE
Q 043172 332 SLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLKMNGTVRSLAFADDG--KQLLS 409 (564)
Q Consensus 332 iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg--~~l~s 409 (564)
+|++.++.. ...+...... -++..|++|..+.|-. ..+.+++|++...+.+..--|...|+.+.++|.+ ..+++
T Consensus 109 v~~vet~~~--~s~~q~k~Q~-~W~~qfs~dEsl~arl-v~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAv 184 (566)
T KOG2315|consen 109 VYNVETGVQ--RSQIQKKMQN-GWVPQFSIDESLAARL-VSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAV 184 (566)
T ss_pred eeeecccee--hhheehhhhc-Ccccccccchhhhhhh-hcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEE
Confidence 999998433 2222222221 2567777776544332 2356777776654333322244555555555542 11111
Q ss_pred E-----eCCCeEEEE---------------------------------------------------------ECCCCcee
Q 043172 410 S-----GGDGQVYHW---------------------------------------------------------DLRTRTCI 427 (564)
Q Consensus 410 ~-----s~dg~V~lw---------------------------------------------------------D~~~~~~~ 427 (564)
- |.-+.|+|| ++....+.
T Consensus 185 yvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~ 264 (566)
T KOG2315|consen 185 YVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVS 264 (566)
T ss_pred EccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEE
Confidence 0 112234443 33322222
Q ss_pred EEEeecCCcceEEEEECCCCCEEEE--EeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecC-C
Q 043172 428 HRAVDEGCINGTALCTSPDGTFFAA--GSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTM-K 504 (564)
Q Consensus 428 ~~~~~~~~~~i~~l~~sp~g~~las--gs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~-~ 504 (564)
..+ ....+|.+++|+|+++-|++ |-.--.+.|||++. .++..+. .++-+++-|+|.|++|+.++.+ -
T Consensus 265 V~L--~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~------~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL 334 (566)
T KOG2315|consen 265 VPL--LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG------KPVFDFP--EGPRNTAFFNPHGNIILLAGFGNL 334 (566)
T ss_pred Eec--CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC------CEeEeCC--CCCccceEECCCCCEEEEeecCCC
Confidence 222 23346889999999986554 55677899999986 6777775 5778899999999999988763 2
Q ss_pred CCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcC------CCeEEEEEcC
Q 043172 505 KNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNA------AGKVFLYKLN 559 (564)
Q Consensus 505 d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~------dG~V~lw~l~ 559 (564)
.|.|-|||+.+.+.+..+... ..+-+.|+|||++|++++. |..++||+..
T Consensus 335 ~G~mEvwDv~n~K~i~~~~a~-----~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 335 PGDMEVWDVPNRKLIAKFKAA-----NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred CCceEEEeccchhhccccccC-----CceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 588999999998877765543 3567899999999998875 4668889864
No 232
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=5.2e-13 Score=140.87 Aligned_cols=218 Identities=15% Similarity=0.153 Sum_probs=143.4
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCC---CcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEE-EeCCCe--EEEE
Q 043172 260 SSTGPINSVQFHRNAQLLLVAGLD---RRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAII-AGRRKF--FYSL 333 (564)
Q Consensus 260 ~h~~~V~~l~fspdg~~l~s~s~d---g~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s-~~~dg~--i~iw 333 (564)
.+...|.+.+|+|+|+.|+.++.. ..|.+|++.++.... +....+.+.+.+|+|+|+.|+. .+.++. |+++
T Consensus 193 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~---l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~ 269 (427)
T PRK02889 193 SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV---VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTV 269 (427)
T ss_pred cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE---eecCCCCccceEECCCCCEEEEEEccCCCceEEEE
Confidence 467789999999999999887753 358999987654322 3323345678999999998875 455665 5555
Q ss_pred ECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeC-CCeEEEE--ECCCCcEEEEeeecCcEEEEEEecCCCEEEEE
Q 043172 334 DLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGN-EGYILLV--SSKTKELIGTLKMNGTVRSLAFADDGKQLLSS 410 (564)
Q Consensus 334 dl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~-dg~I~lw--d~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~ 410 (564)
|+.++...++ ..+.. ......|+|||+.|++++. .|...|| ++.++...............+|+|+|++|+..
T Consensus 270 d~~~~~~~~l---t~~~~-~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~ 345 (427)
T PRK02889 270 NADGSGLRRL---TQSSG-IDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYI 345 (427)
T ss_pred ECCCCCcEEC---CCCCC-CCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEE
Confidence 6666654333 22221 3456789999999887765 3444444 55555543322233334568899999999877
Q ss_pred eCCC---eEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCC---cEEEEeCCcccCCcceeeEEccccccc
Q 043172 411 GGDG---QVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSG---IVNVYNRQEFLGGKRKPIKTIENLTTK 484 (564)
Q Consensus 411 s~dg---~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg---~V~iwd~~~~~~~~~~~~~~~~~~~~~ 484 (564)
+.++ .|++||+.++.... +.... ......|+|+|++|+..+.++ .+.+.++.. .....+..+.+.
T Consensus 346 s~~~g~~~I~v~d~~~g~~~~-lt~~~--~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g------~~~~~l~~~~g~ 416 (427)
T PRK02889 346 SRVGGAFKLYVQDLATGQVTA-LTDTT--RDESPSFAPNGRYILYATQQGGRSVLAAVSSDG------RIKQRLSVQGGD 416 (427)
T ss_pred EccCCcEEEEEEECCCCCeEE-ccCCC--CccCceECCCCCEEEEEEecCCCEEEEEEECCC------CceEEeecCCCC
Confidence 6554 69999998876543 33222 235789999999888877543 355555532 344444445566
Q ss_pred eeEEEEcCC
Q 043172 485 VDFMKFNND 493 (564)
Q Consensus 485 I~~l~fspd 493 (564)
+...+|+|-
T Consensus 417 ~~~p~wsp~ 425 (427)
T PRK02889 417 VREPSWGPF 425 (427)
T ss_pred CCCCccCCC
Confidence 777888874
No 233
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.57 E-value=5.6e-15 Score=154.38 Aligned_cols=273 Identities=13% Similarity=0.113 Sum_probs=203.0
Q ss_pred hcccCCCeEEcCCCccCCCeeeeeeeecccCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCC
Q 043172 227 ILRTDEDLVVKSSAKLSPGLLEYSRLIDANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLED 306 (564)
Q Consensus 227 ll~~~~~~~~~~~~~l~~~~~d~~rl~~~~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~ 306 (564)
++..++.++.+++.....++|....-.......||.+.|+.++.+.+..++++++.|..|++|.+. ...++..+.+|.
T Consensus 197 ~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~--~~~pvsvLrght 274 (1113)
T KOG0644|consen 197 IFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP--DGAPVSVLRGHT 274 (1113)
T ss_pred eeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecC--CCchHHHHhccc
Confidence 356788888888888888999988777888899999999999999999999999999999999887 556888899999
Q ss_pred cCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeee-ccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE
Q 043172 307 CPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKI-GPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKEL 385 (564)
Q Consensus 307 ~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~-~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~ 385 (564)
+.|++++|+|-. +.+.+|++++||..-.-...+ .++......-+.++.|...+.-+++++.++.-..|.+..-.+
T Consensus 275 gavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~ 350 (1113)
T KOG0644|consen 275 GAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAW 350 (1113)
T ss_pred cceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhh
Confidence 999999999954 678899999999872111111 112222223566777888888899999998877776543221
Q ss_pred EEEeeecCcEEEEEEecC-CCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCC-EEEEEeCCCcEEEEe
Q 043172 386 IGTLKMNGTVRSLAFADD-GKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGT-FFAAGSDSGIVNVYN 463 (564)
Q Consensus 386 ~~~~~~~~~V~~l~~spd-g~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~-~lasgs~dg~V~iwd 463 (564)
. ...+.-+.++.+ ..+.+++-.+..+.+|++.++...+....+. ..+..+.++|-+. ...+++.||...|||
T Consensus 351 ~-----~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghs-d~~yvLd~Hpfn~ri~msag~dgst~iwd 424 (1113)
T KOG0644|consen 351 R-----SNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHS-DEVYVLDVHPFNPRIAMSAGYDGSTIIWD 424 (1113)
T ss_pred h-----ccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccc-cceeeeeecCCCcHhhhhccCCCceEeee
Confidence 1 111111112212 2455666667889999999998877666443 4678899999655 556789999999999
Q ss_pred CCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCce
Q 043172 464 RQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNV 518 (564)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~ 518 (564)
+-.+ .|++........+...+||++|+.++..-. -|.+.|.....+..
T Consensus 425 i~eg-----~pik~y~~gh~kl~d~kFSqdgts~~lsd~--hgql~i~g~gqs~s 472 (1113)
T KOG0644|consen 425 IWEG-----IPIKHYFIGHGKLVDGKFSQDGTSIALSDD--HGQLYILGTGQSKS 472 (1113)
T ss_pred cccC-----CcceeeecccceeeccccCCCCceEecCCC--CCceEEeccCCCcc
Confidence 9887 666555444567778899999999987766 68888887755443
No 234
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.57 E-value=1.6e-12 Score=137.14 Aligned_cols=214 Identities=20% Similarity=0.234 Sum_probs=145.5
Q ss_pred cEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCC---CeEEEEECCCCceeeeccccccCCcceEEEEEcC
Q 043172 285 RLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRR---KFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSP 361 (564)
Q Consensus 285 ~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~d---g~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~sp 361 (564)
.|.+++.++.. ...+..+...+...+|+|+|++|+.+... ..|++|++.++....+....+ .+.+++|+|
T Consensus 171 ~l~~~d~~g~~---~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~----~~~~~~~sp 243 (417)
T TIGR02800 171 ELQVADYDGAN---PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPG----MNGAPAFSP 243 (417)
T ss_pred eEEEEcCCCCC---CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCC----CccceEECC
Confidence 56677665432 33444566678899999999999987643 479999999887654433322 355689999
Q ss_pred CCCEEEEEe-CC--CeEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEEeCC-C--eEEEEECCCCceeEEEeecCC
Q 043172 362 DSSVIAFVG-NE--GYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSGGD-G--QVYHWDLRTRTCIHRAVDEGC 435 (564)
Q Consensus 362 dg~~la~~~-~d--g~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s~d-g--~V~lwD~~~~~~~~~~~~~~~ 435 (564)
+|+.|++.. .+ ..|++|++.+++......+........|+|+|+.|+.++.. + .|+++|+.+++... +....
T Consensus 244 Dg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~-l~~~~- 321 (417)
T TIGR02800 244 DGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR-LTFRG- 321 (417)
T ss_pred CCCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCC-
Confidence 999877543 33 46999999888765444455555678999999988776543 2 68999988776433 33222
Q ss_pred cceEEEEECCCCCEEEEEeCCC---cEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCC-CeEEEE
Q 043172 436 INGTALCTSPDGTFFAAGSDSG---IVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKK-NSLKLI 511 (564)
Q Consensus 436 ~~i~~l~~sp~g~~lasgs~dg---~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d-~~I~lw 511 (564)
.....++|+|+|++|+.++.++ .|.+||+... ....+... .......|+|+|++|++++.... ..+.+.
T Consensus 322 ~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~------~~~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~ 394 (417)
T TIGR02800 322 GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGG------GERVLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLV 394 (417)
T ss_pred CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCC------CeEEccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEE
Confidence 2456789999999999888765 7888888763 22222221 23455789999999988877322 235555
Q ss_pred EcC
Q 043172 512 HIP 514 (564)
Q Consensus 512 dl~ 514 (564)
+..
T Consensus 395 ~~~ 397 (417)
T TIGR02800 395 STD 397 (417)
T ss_pred ECC
Confidence 543
No 235
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.56 E-value=1.3e-13 Score=138.34 Aligned_cols=217 Identities=12% Similarity=0.173 Sum_probs=153.4
Q ss_pred eEEEEEeeCCCEEEEEeCCCeEEEEECCCCcee--eecc-ccccCCcceEEEEE-----cCCCCEEEEEeCCCeEEEEEC
Q 043172 309 VRKASFLPDGSQAIIAGRRKFFYSLDLVKAKAD--KIGP-LVGREEKSLEFFEV-----SPDSSVIAFVGNEGYILLVSS 380 (564)
Q Consensus 309 I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~--~~~~-~~~~~~~~v~~~~~-----spdg~~la~~~~dg~I~lwd~ 380 (564)
+....++-.|.+|+..- ...+++|+...+... .+.. ++... ...|-.| .|.+--++++-..|.|.++|.
T Consensus 126 ~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt--~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp 202 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGT--SPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDP 202 (636)
T ss_pred eeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCC--CCceecccccccCCCCcceEEeeccCceEEecc
Confidence 34444555677776653 335788887753221 1111 11111 2233333 356777888888899999998
Q ss_pred CCCcEEEEee-----ecCcEEEEEEecC-CCEEEEEeCCCeEEEEECCC--------------C--------------ce
Q 043172 381 KTKELIGTLK-----MNGTVRSLAFADD-GKQLLSSGGDGQVYHWDLRT--------------R--------------TC 426 (564)
Q Consensus 381 ~t~~~~~~~~-----~~~~V~~l~~spd-g~~l~s~s~dg~V~lwD~~~--------------~--------------~~ 426 (564)
...+....+. ....|+++.|-|. ...++++-.+|.+++||..- + .+
T Consensus 203 ~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNP 282 (636)
T KOG2394|consen 203 INFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNP 282 (636)
T ss_pred hhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCc
Confidence 7633322222 3468999999994 45666777899999997531 0 11
Q ss_pred eEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCC
Q 043172 427 IHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKN 506 (564)
Q Consensus 427 ~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~ 506 (564)
+..|... ...|..++|+|+|++||+.|.||.++|||..+. ..+..++..-+...||+|||||+||++|+. |.
T Consensus 283 v~~w~~~-~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~-----eLlg~mkSYFGGLLCvcWSPDGKyIvtGGE--DD 354 (636)
T KOG2394|consen 283 VARWHIG-EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ-----ELLGVMKSYFGGLLCVCWSPDGKYIVTGGE--DD 354 (636)
T ss_pred cceeEec-cccccceeEcCCCceEEEEecCceEEEeeccHH-----HHHHHHHhhccceEEEEEcCCccEEEecCC--cc
Confidence 2222222 226788999999999999999999999999986 677777777789999999999999999999 99
Q ss_pred eEEEEEcCCCceeccCCCCCCCCCCcEEEEEeC
Q 043172 507 SLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSP 539 (564)
Q Consensus 507 ~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fsp 539 (564)
-|.||.+...+++. ...+|..+|+.++|.|
T Consensus 355 LVtVwSf~erRVVA---RGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 355 LVTVWSFEERRVVA---RGQGHKSWVSVVAFDP 384 (636)
T ss_pred eEEEEEeccceEEE---eccccccceeeEeecc
Confidence 99999999998886 4566779999999983
No 236
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=3.7e-13 Score=130.51 Aligned_cols=245 Identities=13% Similarity=0.103 Sum_probs=178.2
Q ss_pred CCcCeEEEEEeeCCC--EEEEEeCCCeEEEEECCCCceeeec----cccccCCcceEEEEEcCCCCEEEEEeCCCeEEEE
Q 043172 305 EDCPVRKASFLPDGS--QAIIAGRRKFFYSLDLVKAKADKIG----PLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLV 378 (564)
Q Consensus 305 ~~~~I~~l~fspdg~--~l~s~~~dg~i~iwdl~~~~~~~~~----~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lw 378 (564)
....|..++|.-+++ .+..++.+..+..+.+....+.... ...... .+|..++.. ...|++|-.+|.+.+|
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~-~~I~gl~~~--dg~Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGT-KSIKGLKLA--DGTLITCVSSGNLQVR 130 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCcccccccccccccccc-ccccchhhc--CCEEEEEecCCcEEEE
Confidence 345677777775443 3444435666666666555432221 111211 245555443 3467777888999999
Q ss_pred ECCCCc----EEEEeeecCcEEEEEEecCC-CEEEEEeCC--CeEEEEECCCCceeEEEee--------cCCcceEEEEE
Q 043172 379 SSKTKE----LIGTLKMNGTVRSLAFADDG-KQLLSSGGD--GQVYHWDLRTRTCIHRAVD--------EGCINGTALCT 443 (564)
Q Consensus 379 d~~t~~----~~~~~~~~~~V~~l~~spdg-~~l~s~s~d--g~V~lwD~~~~~~~~~~~~--------~~~~~i~~l~~ 443 (564)
..+.+. ....+.....+..+.-++.. .++++||.. ..+.+||+...+.+..-.. .-.+.++.+.|
T Consensus 131 ~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~F 210 (412)
T KOG3881|consen 131 HDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRF 210 (412)
T ss_pred eccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecccee
Confidence 988543 22333344566677766644 455568887 7899999987755433221 22456788889
Q ss_pred CCC--CCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceecc
Q 043172 444 SPD--GTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSN 521 (564)
Q Consensus 444 sp~--g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~ 521 (564)
-+. ...||+++.-+.|++||.+.. .+|+..+.-...+|+++...|.|+++++|.. .+.+..||++.+.....
T Consensus 211 l~g~~~~~fat~T~~hqvR~YDt~~q----RRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~--~g~l~~FD~r~~kl~g~ 284 (412)
T KOG3881|consen 211 LEGSPNYKFATITRYHQVRLYDTRHQ----RRPVAQFDFLENPISSTGLTPSGNFIYTGNT--KGQLAKFDLRGGKLLGC 284 (412)
T ss_pred cCCCCCceEEEEecceeEEEecCccc----CcceeEeccccCcceeeeecCCCcEEEEecc--cchhheecccCceeecc
Confidence 887 789999999999999999865 6899999988999999999999999999988 89999999999988765
Q ss_pred CCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCC
Q 043172 522 WPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNH 560 (564)
Q Consensus 522 ~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~ 560 (564)
...+-.|.|+++..+|.+++||+++-|..|+|+|+.+
T Consensus 285 --~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 285 --GLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred --ccCCccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence 2334458899999999999999999999999999987
No 237
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.56 E-value=3.3e-11 Score=121.19 Aligned_cols=268 Identities=9% Similarity=0.006 Sum_probs=174.0
Q ss_pred CcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeC----------CCeEEEEECCCCceeeecccccc-C--
Q 043172 284 RRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGR----------RKFFYSLDLVKAKADKIGPLVGR-E-- 350 (564)
Q Consensus 284 g~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~----------dg~i~iwdl~~~~~~~~~~~~~~-~-- 350 (564)
++|.+.|.. ....+..+.....|-. + +||+|+.|+++.. +..|.+||..+.+...-..+... +
T Consensus 27 ~~v~ViD~~--~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~ 102 (352)
T TIGR02658 27 TQVYTIDGE--AGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL 102 (352)
T ss_pred ceEEEEECC--CCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh
Confidence 789999877 4556677765554443 4 9999999988755 68999999999987654443222 1
Q ss_pred -CcceEEEEEcCCCCEEEEEe-C-CCeEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEEeCCCeEEEEECCC-Cce
Q 043172 351 -EKSLEFFEVSPDSSVIAFVG-N-EGYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRT-RTC 426 (564)
Q Consensus 351 -~~~v~~~~~spdg~~la~~~-~-dg~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~-~~~ 426 (564)
......++++|+|++|++.. . +..|.++|+.+++.+..+...+...-+..+.+...+. +.||......+.. ++.
T Consensus 103 ~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~--~~Dg~~~~v~~d~~g~~ 180 (352)
T TIGR02658 103 VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMH--CRDGSLAKVGYGTKGNP 180 (352)
T ss_pred ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEE--eecCceEEEEecCCCce
Confidence 12345799999999999876 3 6899999999999999887544433333333332222 2344444333322 221
Q ss_pred e-EE--EeecCCcce-EEEEECC-CCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccc-------cccceeEEEEcCCC
Q 043172 427 I-HR--AVDEGCING-TALCTSP-DGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIEN-------LTTKVDFMKFNNDA 494 (564)
Q Consensus 427 ~-~~--~~~~~~~~i-~~l~~sp-~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~-------~~~~I~~l~fspdg 494 (564)
. .. +.......+ ..-.|.+ +|+++.+... |.|.+.|+.........++..+.. ....+.-++++|++
T Consensus 181 ~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg 259 (352)
T TIGR02658 181 KIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRAR 259 (352)
T ss_pred EEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCC
Confidence 1 11 100100000 0113345 7887777666 999999975431111233333221 22334459999999
Q ss_pred cEEEEEecCC--------CCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCC-EEEEEc-CCCeEEEEEcCCCC
Q 043172 495 QILAICSTMK--------KNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGG-FMAVGN-AAGKVFLYKLNHYH 562 (564)
Q Consensus 495 ~~La~~s~~~--------d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~-~Lasgs-~dG~V~lw~l~~~~ 562 (564)
+.|+++.... .+.|.++|..+++.+..++.. ..+..++|+||++ +|++.+ .++.|.++|+.+++
T Consensus 260 ~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG----~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 260 DRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG----HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred CEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC----CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCe
Confidence 9998854211 268999999999999988765 4688999999999 888777 57889999998765
No 238
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=2.8e-12 Score=135.93 Aligned_cols=236 Identities=18% Similarity=0.221 Sum_probs=156.2
Q ss_pred cEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCC---CeEEEEECCCCceeeeccccccCCcceEEEEEcC
Q 043172 285 RLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRR---KFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSP 361 (564)
Q Consensus 285 ~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~d---g~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~sp 361 (564)
.|.++|.++.. .+.+..+..++....|+|+|++|+..+.+ ..|++|++.++....+....+ .+....|+|
T Consensus 180 ~l~~~d~~g~~---~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g----~~~~~~~Sp 252 (430)
T PRK00178 180 TLQRSDYDGAR---AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEG----LNGAPAWSP 252 (430)
T ss_pred EEEEECCCCCC---ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCC----CcCCeEECC
Confidence 36666666542 34444566788999999999999887633 479999999988765543333 244689999
Q ss_pred CCCEEEEEe-CCC--eEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEEeC-C--CeEEEEECCCCceeEEEeecCC
Q 043172 362 DSSVIAFVG-NEG--YILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSGG-D--GQVYHWDLRTRTCIHRAVDEGC 435 (564)
Q Consensus 362 dg~~la~~~-~dg--~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s~-d--g~V~lwD~~~~~~~~~~~~~~~ 435 (564)
+|+.|++.. .+| .|++||+.+++......+........|+|+|+.|+..+. + ..|+++++.+++... +...+.
T Consensus 253 DG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~ 331 (430)
T PRK00178 253 DGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGN 331 (430)
T ss_pred CCCEEEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCC
Confidence 999887543 344 689999998876543335556677899999998877654 2 368888988776533 222222
Q ss_pred cceEEEEECCCCCEEEEEeCC-C--cEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCC-CCeEEEE
Q 043172 436 INGTALCTSPDGTFFAAGSDS-G--IVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMK-KNSLKLI 511 (564)
Q Consensus 436 ~~i~~l~~sp~g~~lasgs~d-g--~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~-d~~I~lw 511 (564)
.....+|+|+|++|+..+.. + .|.+||+.++ . ...+.. ........|+|||+.|+.++... ...|.++
T Consensus 332 -~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg-----~-~~~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~ 403 (430)
T PRK00178 332 -YNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRG-----S-VRILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLV 403 (430)
T ss_pred -CccceEECCCCCEEEEEEccCCceEEEEEECCCC-----C-EEEccC-CCCCCCceECCCCCEEEEEEecCCceEEEEE
Confidence 23457899999999877653 3 4788888764 2 222322 12233568999999998887631 2346667
Q ss_pred EcCCCceeccCCCCCCCCCCcEEEEEeCC
Q 043172 512 HIPSYNVFSNWPPANRNLQYPRCLDFSPG 540 (564)
Q Consensus 512 dl~s~~~~~~~~~~~~~~~~V~~l~fspd 540 (564)
++.. .....++. +.+.+...+|||-
T Consensus 404 ~~~g-~~~~~l~~---~~g~~~~p~ws~~ 428 (430)
T PRK00178 404 SING-RVRLPLPT---AQGEVREPSWSPY 428 (430)
T ss_pred ECCC-CceEECcC---CCCCcCCCccCCC
Confidence 7643 33333332 2355677788873
No 239
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=2.5e-12 Score=136.26 Aligned_cols=235 Identities=18% Similarity=0.230 Sum_probs=153.0
Q ss_pred cEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCC---CeEEEEECCCCceeeeccccccCCcceEEEEEcC
Q 043172 285 RLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRR---KFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSP 361 (564)
Q Consensus 285 ~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~d---g~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~sp 361 (564)
.|.++|.++... +.+.....++.+..|+|||++|+..+.. ..|++||+.+++...+..+.+. .....|+|
T Consensus 199 ~l~i~d~dG~~~---~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~----~~~~~wSP 271 (448)
T PRK04792 199 QLMIADYDGYNE---QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGI----NGAPRFSP 271 (448)
T ss_pred EEEEEeCCCCCc---eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCC----cCCeeECC
Confidence 566667665432 2344456788899999999999887532 3699999998876555444332 34689999
Q ss_pred CCCEEEEE-eCCC--eEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEEeC-C--CeEEEEECCCCceeEEEeecCC
Q 043172 362 DSSVIAFV-GNEG--YILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSGG-D--GQVYHWDLRTRTCIHRAVDEGC 435 (564)
Q Consensus 362 dg~~la~~-~~dg--~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s~-d--g~V~lwD~~~~~~~~~~~~~~~ 435 (564)
+|+.|++. +.+| .|+++|+.+++......+.......+|+|+|+.|+..+. + ..|+++|+.+++... +...+.
T Consensus 272 DG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~ 350 (448)
T PRK04792 272 DGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGE 350 (448)
T ss_pred CCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCC
Confidence 99988764 4455 488889988876544445556678899999998877654 2 368888888776543 322222
Q ss_pred cceEEEEECCCCCEEEEEeC-CC--cEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCC-CCeEEEE
Q 043172 436 INGTALCTSPDGTFFAAGSD-SG--IVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMK-KNSLKLI 511 (564)
Q Consensus 436 ~~i~~l~~sp~g~~lasgs~-dg--~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~-d~~I~lw 511 (564)
.....+|+|+|++|+..+. .+ .|.++|+.++ .. ..+... .......|+|+|+.|+..+... ...+.++
T Consensus 351 -~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g-----~~-~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~ 422 (448)
T PRK04792 351 -QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETG-----AM-QVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAV 422 (448)
T ss_pred -CCcCeeECCCCCEEEEEEecCCceEEEEEECCCC-----Ce-EEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEE
Confidence 2345789999998887654 34 3555676653 22 222221 1223458999999998877532 1246777
Q ss_pred EcCCCceeccCCCCCCCCCCcEEEEEeC
Q 043172 512 HIPSYNVFSNWPPANRNLQYPRCLDFSP 539 (564)
Q Consensus 512 dl~s~~~~~~~~~~~~~~~~V~~l~fsp 539 (564)
++. +.....++.. .+.+...+|||
T Consensus 423 ~~~-G~~~~~l~~~---~g~~~~p~Wsp 446 (448)
T PRK04792 423 SID-GRFKARLPAG---QGEVKSPAWSP 446 (448)
T ss_pred ECC-CCceEECcCC---CCCcCCCccCC
Confidence 764 4444444332 35567788887
No 240
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.54 E-value=7e-13 Score=123.88 Aligned_cols=156 Identities=17% Similarity=0.304 Sum_probs=115.7
Q ss_pred eEEEEcCCCCEEEEEeC----------CCcEEEEEecCCCCceeEEEEe-CCcCeEEEEEeeCCCEEEEEe--CCCeEEE
Q 043172 266 NSVQFHRNAQLLLVAGL----------DRRLRFFQIDGKRNTKIQSIFL-EDCPVRKASFLPDGSQAIIAG--RRKFFYS 332 (564)
Q Consensus 266 ~~l~fspdg~~l~s~s~----------dg~I~lwd~~~~~~~~~~~~~~-~~~~I~~l~fspdg~~l~s~~--~dg~i~i 332 (564)
-.+.|+|+|.+|++-.. -+...||.++... ..+..+.. ..++|.+++|+|+|+.+++.. ..+.|.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~-~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKN-IPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCC-CccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 46789999987765432 2346777775433 33444443 345799999999999987653 5678999
Q ss_pred EECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeC---CCeEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEE
Q 043172 333 LDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGN---EGYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLS 409 (564)
Q Consensus 333 wdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~---dg~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s 409 (564)
||+.... +..+.. ..+..+.|+|+|++|++++. .|.|.+||+++.+.+....|.. ++.++|+|+|++|++
T Consensus 88 yd~~~~~---i~~~~~---~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~-~t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 88 YDVKGKK---IFSFGT---QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD-ATDVEWSPDGRYLAT 160 (194)
T ss_pred EcCcccE---eEeecC---CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCc-EEEEEEcCCCCEEEE
Confidence 9997322 323322 25788999999999999875 3779999999999988887665 789999999999999
Q ss_pred EeC------CCeEEEEECCCCceeEEE
Q 043172 410 SGG------DGQVYHWDLRTRTCIHRA 430 (564)
Q Consensus 410 ~s~------dg~V~lwD~~~~~~~~~~ 430 (564)
++. |..++||+.. |+.+...
T Consensus 161 a~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 161 ATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred EEeccceeccccEEEEEec-CeEeEec
Confidence 874 6788999985 6665543
No 241
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=6.5e-12 Score=132.11 Aligned_cols=240 Identities=18% Similarity=0.151 Sum_probs=151.7
Q ss_pred CcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEE---EEeC--CCeEEEEECCCCceeeeccccccCCcceEEEE
Q 043172 284 RRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAI---IAGR--RKFFYSLDLVKAKADKIGPLVGREEKSLEFFE 358 (564)
Q Consensus 284 g~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~---s~~~--dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~ 358 (564)
+.|.+.|.++..... +......+.+-+|||||+.++ +... ...|++.++.++...++..+.+. ....+
T Consensus 165 ~~l~~~d~dG~~~~~---lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~----~~~p~ 237 (428)
T PRK01029 165 GELWSVDYDGQNLRP---LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGN----QLMPT 237 (428)
T ss_pred ceEEEEcCCCCCceE---cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCC----ccceE
Confidence 356666666543222 333455677889999997632 3323 34799999999887666555443 34589
Q ss_pred EcCCCCEEEEEeC-----CCeEEEEECCCC---cEEEEeee-cCcEEEEEEecCCCEEEEEe-CCCe--EEEEECCC-Cc
Q 043172 359 VSPDSSVIAFVGN-----EGYILLVSSKTK---ELIGTLKM-NGTVRSLAFADDGKQLLSSG-GDGQ--VYHWDLRT-RT 425 (564)
Q Consensus 359 ~spdg~~la~~~~-----dg~I~lwd~~t~---~~~~~~~~-~~~V~~l~~spdg~~l~s~s-~dg~--V~lwD~~~-~~ 425 (564)
|||||+.|+..+. +..+.+|++.++ ........ .+.....+|+|||+.|+..+ .+|. |+++++.. +.
T Consensus 238 wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~ 317 (428)
T PRK01029 238 FSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQ 317 (428)
T ss_pred ECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccccc
Confidence 9999999987663 223445777653 33333322 23456789999999888765 3554 55555542 22
Q ss_pred eeEEEeecCCcceEEEEECCCCCEEEEEeCC---CcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEec
Q 043172 426 CIHRAVDEGCINGTALCTSPDGTFFAAGSDS---GIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICST 502 (564)
Q Consensus 426 ~~~~~~~~~~~~i~~l~~sp~g~~lasgs~d---g~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~ 502 (564)
....+.... ..+...+|||+|++|+..+.. ..|.+||+.++ +. ..+......+....|+|||+.|+..+.
T Consensus 318 ~~~~lt~~~-~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g-----~~-~~Lt~~~~~~~~p~wSpDG~~L~f~~~ 390 (428)
T PRK01029 318 SPRLLTKKY-RNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATG-----RD-YQLTTSPENKESPSWAIDSLHLVYSAG 390 (428)
T ss_pred ceEEeccCC-CCccceeECCCCCEEEEEEcCCCCcEEEEEECCCC-----Ce-EEccCCCCCccceEECCCCCEEEEEEC
Confidence 233333332 245678999999988876543 36899999875 22 333333345678999999998886543
Q ss_pred -CCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCC
Q 043172 503 -MKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGG 541 (564)
Q Consensus 503 -~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg 541 (564)
.....|.+|++.++....... ..+.+...+|+|-.
T Consensus 391 ~~g~~~L~~vdl~~g~~~~Lt~----~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 391 NSNESELYLISLITKKTRKIVI----GSGEKRFPSWGAFP 426 (428)
T ss_pred CCCCceEEEEECCCCCEEEeec----CCCcccCceecCCC
Confidence 224678899998776544322 22456678888753
No 242
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.52 E-value=9e-11 Score=113.74 Aligned_cols=275 Identities=15% Similarity=0.158 Sum_probs=187.2
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeC---CCcEEEEEecCC--CCceeEEEEeCCcCeEEEEEeeCCCEEEEEe-CCCeEEEE
Q 043172 260 SSTGPINSVQFHRNAQLLLVAGL---DRRLRFFQIDGK--RNTKIQSIFLEDCPVRKASFLPDGSQAIIAG-RRKFFYSL 333 (564)
Q Consensus 260 ~h~~~V~~l~fspdg~~l~s~s~---dg~I~lwd~~~~--~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~-~dg~i~iw 333 (564)
.+.+.++-|+|+|+.++|.++.. .|.|.-|.++.. ....+........+...++++++|++|+++. ..|.|.++
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY 116 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence 46678999999999999988865 578999999863 2233333333445558899999999999987 56899999
Q ss_pred ECCC-CceeeeccccccCC---------cceEEEEEcCCCCEEEEEeC-CCeEEEEECCCCcEEEE----eeecCcEEEE
Q 043172 334 DLVK-AKADKIGPLVGREE---------KSLEFFEVSPDSSVIAFVGN-EGYILLVSSKTKELIGT----LKMNGTVRSL 398 (564)
Q Consensus 334 dl~~-~~~~~~~~~~~~~~---------~~v~~~~~spdg~~la~~~~-dg~I~lwd~~t~~~~~~----~~~~~~V~~l 398 (564)
-+.. |.+........|.. .-+.+..+.|++++|++..- --.|.+|++..+.+... ++.....+.|
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi 196 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHI 196 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceE
Confidence 9865 44433222222211 12778999999999998764 25799999987765432 2345678999
Q ss_pred EEecCCCEEEEEeC-CCeEEEEECCCC-ceeEEEee--------cCCcceEEEEECCCCCEEEEEeC-CCcEEEEeCCcc
Q 043172 399 AFADDGKQLLSSGG-DGQVYHWDLRTR-TCIHRAVD--------EGCINGTALCTSPDGTFFAAGSD-SGIVNVYNRQEF 467 (564)
Q Consensus 399 ~~spdg~~l~s~s~-dg~V~lwD~~~~-~~~~~~~~--------~~~~~i~~l~~sp~g~~lasgs~-dg~V~iwd~~~~ 467 (564)
.|+|++++.++.+. +++|-+|..... ..+..+.. .+..+...|.++++|++|.++.. ...|.+|.+...
T Consensus 197 ~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~ 276 (346)
T COG2706 197 VFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD 276 (346)
T ss_pred EEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence 99999999888776 889999998763 22222221 23445678999999999987743 347888888754
Q ss_pred cCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcC--CCceeccCCCCCCCCCCcEEEEEe
Q 043172 468 LGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIP--SYNVFSNWPPANRNLQYPRCLDFS 538 (564)
Q Consensus 468 ~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~--s~~~~~~~~~~~~~~~~V~~l~fs 538 (564)
. +....+.....+........|+|.|++|+++... .+.|.+|... +|.+-.... ........|+.|.
T Consensus 277 ~-g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~-sd~i~vf~~d~~TG~L~~~~~--~~~~p~Pvcv~f~ 345 (346)
T COG2706 277 G-GKLELVGITPTEGQFPRDFNINPSGRFLIAANQK-SDNITVFERDKETGRLTLLGR--YAVVPEPVCVKFL 345 (346)
T ss_pred C-CEEEEEEEeccCCcCCccceeCCCCCEEEEEccC-CCcEEEEEEcCCCceEEeccc--ccCCCCcEEEEEc
Confidence 1 1123333334445557889999999999999886 5568888775 444322111 1122345677664
No 243
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.51 E-value=1.9e-12 Score=121.04 Aligned_cols=154 Identities=16% Similarity=0.236 Sum_probs=112.6
Q ss_pred EEEEEcCCCCEEEEEeC----------CCeEEEEECCC-CcEEEEee--ecCcEEEEEEecCCCEEEEEe--CCCeEEEE
Q 043172 355 EFFEVSPDSSVIAFVGN----------EGYILLVSSKT-KELIGTLK--MNGTVRSLAFADDGKQLLSSG--GDGQVYHW 419 (564)
Q Consensus 355 ~~~~~spdg~~la~~~~----------dg~I~lwd~~t-~~~~~~~~--~~~~V~~l~~spdg~~l~s~s--~dg~V~lw 419 (564)
..+.|+|+|.+|++-.. -|...+|.++. ...+..+. ..++|.+++|+|+|+.|++.. .++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 35889999988776443 13455555532 23344444 456799999999999876553 46799999
Q ss_pred ECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeC---CCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcE
Q 043172 420 DLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSD---SGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQI 496 (564)
Q Consensus 420 D~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~---dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~ 496 (564)
|++ ++.+..+. ...+..+.|+|+|++|++|+. .|.|.+||++.. +++.+... ..++.++|+|+|++
T Consensus 89 d~~-~~~i~~~~---~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~-----~~i~~~~~--~~~t~~~WsPdGr~ 157 (194)
T PF08662_consen 89 DVK-GKKIFSFG---TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK-----KKISTFEH--SDATDVEWSPDGRY 157 (194)
T ss_pred cCc-ccEeEeec---CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC-----EEeecccc--CcEEEEEEcCCCCE
Confidence 997 55565553 234578999999999999864 477999999976 77777653 34789999999999
Q ss_pred EEEEecC----CCCeEEEEEcCCCceec
Q 043172 497 LAICSTM----KKNSLKLIHIPSYNVFS 520 (564)
Q Consensus 497 La~~s~~----~d~~I~lwdl~s~~~~~ 520 (564)
|++++.. .|+.++||++. |+.+.
T Consensus 158 ~~ta~t~~r~~~dng~~Iw~~~-G~~l~ 184 (194)
T PF08662_consen 158 LATATTSPRLRVDNGFKIWSFQ-GRLLY 184 (194)
T ss_pred EEEEEeccceeccccEEEEEec-CeEeE
Confidence 9998753 37889999985 44443
No 244
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=2.8e-13 Score=134.49 Aligned_cols=259 Identities=15% Similarity=0.189 Sum_probs=183.8
Q ss_pred eEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCC--CCEEEEEeCCCeEE
Q 043172 299 IQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPD--SSVIAFVGNEGYIL 376 (564)
Q Consensus 299 ~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spd--g~~la~~~~dg~I~ 376 (564)
...+..|.+.|..+.|+..|..|++++.+..|.+||...+... ..+.+.+...|....|-|. ...+++++.||.|+
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~--l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPK--LSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcc--cccccccccchhhhhccCCCCCcCceeccccCcee
Confidence 3456789999999999999999999999999999999988763 2343333335666677774 46789999999999
Q ss_pred EEECCC-CcEEEE---eeecCcEEEEEEecCC-CEEEEEeCCCeEEEEECCCCceeEEEee---cC--CcceEEEEECCC
Q 043172 377 LVSSKT-KELIGT---LKMNGTVRSLAFADDG-KQLLSSGGDGQVYHWDLRTRTCIHRAVD---EG--CINGTALCTSPD 446 (564)
Q Consensus 377 lwd~~t-~~~~~~---~~~~~~V~~l~~spdg-~~l~s~s~dg~V~lwD~~~~~~~~~~~~---~~--~~~i~~l~~sp~ 446 (564)
+-.+.. +.+..+ .+|.++|.-++.-|+. ..|++++.|+.|.-+|++.+.....+.. .. .+....|+..|.
T Consensus 213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~ 292 (559)
T KOG1334|consen 213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR 292 (559)
T ss_pred eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence 887653 333322 2399999999999954 5788999999999999998765544432 12 246678888887
Q ss_pred CC-EEEEEeCCCcEEEEeCCcccC-CcceeeEEcc------ccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCce
Q 043172 447 GT-FFAAGSDSGIVNVYNRQEFLG-GKRKPIKTIE------NLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNV 518 (564)
Q Consensus 447 g~-~lasgs~dg~V~iwd~~~~~~-~~~~~~~~~~------~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~ 518 (564)
.. .+++|+.+..++|||.+.... ....++..+. .....|++++|+.++.-|+++-. |-.|+|+.-.-+.-
T Consensus 293 nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn--De~IYLF~~~~~~G 370 (559)
T KOG1334|consen 293 NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN--DEDIYLFNKSMGDG 370 (559)
T ss_pred CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec--ccceEEeccccccC
Confidence 65 899999999999999886521 1112233332 33567999999977666655555 77899984322111
Q ss_pred --e-------ccCCC-CCCCC--CCcEEEE-EeCCCCEEEEEcCCCeEEEEEcCCC
Q 043172 519 --F-------SNWPP-ANRNL--QYPRCLD-FSPGGGFMAVGNAAGKVFLYKLNHY 561 (564)
Q Consensus 519 --~-------~~~~~-~~~~~--~~V~~l~-fspdg~~Lasgs~dG~V~lw~l~~~ 561 (564)
. ...+. .++|. ..|..+- |-|...|+++|++-|.|.||+-++.
T Consensus 371 ~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~ 426 (559)
T KOG1334|consen 371 SEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG 426 (559)
T ss_pred CCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchh
Confidence 0 00011 23332 2355555 5689999999999999999997653
No 245
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=7.8e-12 Score=126.05 Aligned_cols=276 Identities=12% Similarity=0.171 Sum_probs=180.1
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeC-----------CCeEEE
Q 043172 264 PINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGR-----------RKFFYS 332 (564)
Q Consensus 264 ~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~-----------dg~i~i 332 (564)
.=+-+.|||-|.||+|--.-| |.+| .+.....++.+. |. .|.-+.|||+.+||++-+. ...++|
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~G-I~lW--GG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~I 286 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQG-IALW--GGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLII 286 (698)
T ss_pred eeeeEEecCCceEEEEEeccc-eeee--cCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEE
Confidence 457899999999999987665 8899 444444555544 33 5889999999999998652 257999
Q ss_pred EECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEe
Q 043172 333 LDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSG 411 (564)
Q Consensus 333 wdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s 411 (564)
||+.+|...+...........-.-+.||.|++++|--.. ..|.||+..+..++..-. ....|..+.|+|.++.|+.-+
T Consensus 287 WDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwt 365 (698)
T KOG2314|consen 287 WDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWT 365 (698)
T ss_pred EEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEc
Confidence 999999876554443222222345899999999998766 568888876644432222 345688888888887776543
Q ss_pred CC-----CeEEEEECCCCceeEEEe---------------------------------------------------ecCC
Q 043172 412 GD-----GQVYHWDLRTRTCIHRAV---------------------------------------------------DEGC 435 (564)
Q Consensus 412 ~d-----g~V~lwD~~~~~~~~~~~---------------------------------------------------~~~~ 435 (564)
.. ..+.+..+.+++.++.-. ..-.
T Consensus 366 pe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velk 445 (698)
T KOG2314|consen 366 PETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELK 445 (698)
T ss_pred ccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecc
Confidence 21 123333322222111000 0011
Q ss_pred cceEEEEECCCCCEEEEEeC---CCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecC-CCCeEEEE
Q 043172 436 INGTALCTSPDGTFFAAGSD---SGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTM-KKNSLKLI 511 (564)
Q Consensus 436 ~~i~~l~~sp~g~~lasgs~---dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~-~d~~I~lw 511 (564)
-.+...+|-|.|..+++-+. ..++.+|.+.+. ...+..+..+.. ...+.+.|+|.|++++++.-. ..|.+.++
T Consensus 446 e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~-~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~ 522 (698)
T KOG2314|consen 446 ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETN-IKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFY 522 (698)
T ss_pred hheeeeeeccCCCeEEEEEccccccceeEEEeecC-CCchhhhhhhcc--cccceEEEcCCCcEEEEEEecccccceEEE
Confidence 13456788899987776543 357889988742 244566666663 567889999999999876531 26889999
Q ss_pred EcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCC
Q 043172 512 HIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAG 551 (564)
Q Consensus 512 dl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG 551 (564)
|+.-..+... ....| ...+.+.|.|.|+|+++++.-+
T Consensus 523 D~~~a~~k~~--~~~eh-~~at~veWDPtGRYvvT~ss~w 559 (698)
T KOG2314|consen 523 DTDYADLKDT--ASPEH-FAATEVEWDPTGRYVVTSSSSW 559 (698)
T ss_pred ecchhhhhhc--cCccc-cccccceECCCCCEEEEeeehh
Confidence 9874222211 11122 3467899999999999987644
No 246
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=4.6e-12 Score=128.15 Aligned_cols=244 Identities=17% Similarity=0.238 Sum_probs=181.8
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCcee
Q 043172 262 TGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKAD 341 (564)
Q Consensus 262 ~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~ 341 (564)
...|.-.-++-|..-++.-..|.+|.+..-.+ ....+..+ ..-..++++.-..-|++++....|+-+++..|...
T Consensus 94 ae~V~feiLsDD~SK~v~L~~DR~IefHak~G----~hy~~RIP-~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL 168 (703)
T KOG2321|consen 94 AEVVDFEILSDDYSKSVFLQNDRTIEFHAKYG----RHYRTRIP-KFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFL 168 (703)
T ss_pred ccceeEEEeccchhhheEeecCceeeehhhcC----eeeeeecC-cCCccccccCCCccEEEeecCcceEEEEccccccc
Confidence 34566666777766666666788887764332 11222211 22345666643334555555667999999999874
Q ss_pred eeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeee-------cC-----cEEEEEEecCCCEEEE
Q 043172 342 KIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLKM-------NG-----TVRSLAFADDGKQLLS 409 (564)
Q Consensus 342 ~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~~-------~~-----~V~~l~~spdg~~l~s 409 (564)
.. +.. ....++++.+++...+|++|+.+|.|..||.++...+.++.. .+ .|+++.|+.+|-.+++
T Consensus 169 ~P--~~~-~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aV 245 (703)
T KOG2321|consen 169 NP--FET-DSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAV 245 (703)
T ss_pred cc--ccc-ccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEe
Confidence 43 322 224799999999999999999999999999999888877752 22 3999999999999999
Q ss_pred EeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCC--CEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeE
Q 043172 410 SGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDG--TFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDF 487 (564)
Q Consensus 410 ~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g--~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~ 487 (564)
|+..|.|+|||+++.+++..-.+....+|..+.|.+.+ ..|++ .....++|||-.++ ++...+.. +..+..
T Consensus 246 Gts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~G-----k~~asiEp-t~~lND 318 (703)
T KOG2321|consen 246 GTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTG-----KPMASIEP-TSDLND 318 (703)
T ss_pred eccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEe-cchHHhhhcccccC-----Cceeeccc-cCCcCc
Confidence 99999999999999998877666677889999997763 34444 44568999999988 88888775 455999
Q ss_pred EEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccC
Q 043172 488 MKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNW 522 (564)
Q Consensus 488 l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~ 522 (564)
+++-|++-++++|-. ...+..|-++...+...|
T Consensus 319 ~C~~p~sGm~f~Ane--~~~m~~yyiP~LGPaPrW 351 (703)
T KOG2321|consen 319 FCFVPGSGMFFTANE--SSKMHTYYIPSLGPAPRW 351 (703)
T ss_pred eeeecCCceEEEecC--CCcceeEEccccCCCchh
Confidence 999999999999987 778888888776555444
No 247
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.48 E-value=1.3e-11 Score=130.21 Aligned_cols=214 Identities=18% Similarity=0.177 Sum_probs=143.7
Q ss_pred CeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCC---CeEEEEECCCCcEEEEeeecCcEEEEEEecCC
Q 043172 328 KFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNE---GYILLVSSKTKELIGTLKMNGTVRSLAFADDG 404 (564)
Q Consensus 328 g~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d---g~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg 404 (564)
..|+++|........+ ..+. ..+....|+|+|++|+++... ..|++|++.+++......+.+.+.+++|+|+|
T Consensus 170 ~~l~~~d~~g~~~~~l---~~~~-~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg 245 (417)
T TIGR02800 170 YELQVADYDGANPQTI---TRSR-EPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDG 245 (417)
T ss_pred ceEEEEcCCCCCCEEe---ecCC-CceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCC
Confidence 4688888875554332 2222 257788999999999987654 48999999988765555566677789999999
Q ss_pred CEEEEE-eCC--CeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeC-CC--cEEEEeCCcccCCcceeeEEc
Q 043172 405 KQLLSS-GGD--GQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSD-SG--IVNVYNRQEFLGGKRKPIKTI 478 (564)
Q Consensus 405 ~~l~s~-s~d--g~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~-dg--~V~iwd~~~~~~~~~~~~~~~ 478 (564)
+.|+.. +.+ ..|++|++.++.... +..... .....+|+|+|++|+..+. .| .|++|++... + ...+
T Consensus 246 ~~l~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~-~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~-----~-~~~l 317 (417)
T TIGR02800 246 SKLAVSLSKDGNPDIYVMDLDGKQLTR-LTNGPG-IDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGG-----E-VRRL 317 (417)
T ss_pred CEEEEEECCCCCccEEEEECCCCCEEE-CCCCCC-CCCCEEECCCCCEEEEEECCCCCceEEEEECCCC-----C-EEEe
Confidence 877654 433 369999998776433 332222 2346789999998887664 33 5777777653 2 2334
Q ss_pred cccccceeEEEEcCCCcEEEEEecCC-CCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCC---eEE
Q 043172 479 ENLTTKVDFMKFNNDAQILAICSTMK-KNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAG---KVF 554 (564)
Q Consensus 479 ~~~~~~I~~l~fspdg~~La~~s~~~-d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG---~V~ 554 (564)
..+...+..+.|+|+|++|++++... ...|.+|++.++.... +... .......|+|+|++|+.++.++ .++
T Consensus 318 ~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~~----~~~~~p~~spdg~~l~~~~~~~~~~~l~ 392 (417)
T TIGR02800 318 TFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LTDT----GLDESPSFAPNGRMILYATTRGGRGVLG 392 (417)
T ss_pred ecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-ccCC----CCCCCceECCCCCEEEEEEeCCCcEEEE
Confidence 43456677889999999999888721 1278888987754322 2211 2234568999999988776654 344
Q ss_pred EEEc
Q 043172 555 LYKL 558 (564)
Q Consensus 555 lw~l 558 (564)
+.+.
T Consensus 393 ~~~~ 396 (417)
T TIGR02800 393 LVST 396 (417)
T ss_pred EEEC
Confidence 4443
No 248
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=1.7e-11 Score=129.92 Aligned_cols=217 Identities=15% Similarity=0.176 Sum_probs=144.7
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCC---CcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEE-eCCC--eEEEE
Q 043172 260 SSTGPINSVQFHRNAQLLLVAGLD---RRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIA-GRRK--FFYSL 333 (564)
Q Consensus 260 ~h~~~V~~l~fspdg~~l~s~s~d---g~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~-~~dg--~i~iw 333 (564)
.|...+.+.+|+|+|+.|+..+.+ ..|.+|++.++....+ ....+.+...+|+|+|++|+.. ..++ .|++|
T Consensus 196 ~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l---~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~ 272 (430)
T PRK00178 196 QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQI---TNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVM 272 (430)
T ss_pred cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEc---cCCCCCcCCeEECCCCCEEEEEEccCCCceEEEE
Confidence 366789999999999998877653 3688888875543332 2233445678999999988854 3343 68999
Q ss_pred ECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCC---CeEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEE
Q 043172 334 DLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNE---GYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSS 410 (564)
Q Consensus 334 dl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d---g~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~ 410 (564)
|+.++....+. .+.. ......|+|+|+.|++.+.. ..|+++++.+++...............|+|+|+.|+..
T Consensus 273 d~~~~~~~~lt---~~~~-~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~ 348 (430)
T PRK00178 273 DLASRQLSRVT---NHPA-IDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMV 348 (430)
T ss_pred ECCCCCeEEcc---cCCC-CcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEE
Confidence 99988765432 2222 34567899999988877642 36888898888754332222334567899999999877
Q ss_pred eCC-C--eEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCC---CcEEEEeCCcccCCcceeeEEccccccc
Q 043172 411 GGD-G--QVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDS---GIVNVYNRQEFLGGKRKPIKTIENLTTK 484 (564)
Q Consensus 411 s~d-g--~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~d---g~V~iwd~~~~~~~~~~~~~~~~~~~~~ 484 (564)
+.. + .|++||+.++... .+.... ......|+|+|++++..+.. ..|.++++.. .....+..+.+.
T Consensus 349 ~~~~~~~~l~~~dl~tg~~~-~lt~~~--~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g------~~~~~l~~~~g~ 419 (430)
T PRK00178 349 HRQDGNFHVAAQDLQRGSVR-ILTDTS--LDESPSVAPNGTMLIYATRQQGRGVLMLVSING------RVRLPLPTAQGE 419 (430)
T ss_pred EccCCceEEEEEECCCCCEE-EccCCC--CCCCceECCCCCEEEEEEecCCceEEEEEECCC------CceEECcCCCCC
Confidence 653 2 5889999887653 333221 12356899999988877653 3466666653 233344444556
Q ss_pred eeEEEEcC
Q 043172 485 VDFMKFNN 492 (564)
Q Consensus 485 I~~l~fsp 492 (564)
+...+|+|
T Consensus 420 ~~~p~ws~ 427 (430)
T PRK00178 420 VREPSWSP 427 (430)
T ss_pred cCCCccCC
Confidence 67777776
No 249
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=4.3e-11 Score=125.95 Aligned_cols=224 Identities=14% Similarity=0.076 Sum_probs=141.2
Q ss_pred CeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCE--EE-EEeCC--CeEEEEECCCCcEEEEeeecCcEEEEEEec
Q 043172 328 KFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSV--IA-FVGNE--GYILLVSSKTKELIGTLKMNGTVRSLAFAD 402 (564)
Q Consensus 328 g~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~--la-~~~~d--g~I~lwd~~t~~~~~~~~~~~~V~~l~~sp 402 (564)
..|++.|...+...++.. ... ....-.|||||+. ++ +...+ ..|++.++.+++........+.....+|+|
T Consensus 165 ~~l~~~d~dG~~~~~lt~---~~~-~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSP 240 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQ---EHS-LSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSP 240 (428)
T ss_pred ceEEEEcCCCCCceEccc---CCC-CcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECC
Confidence 468888888776544322 222 3567799999975 32 33333 468899998887655544566667789999
Q ss_pred CCCEEEEEeC-CC----eEEEEECCCC--ceeEEEeecCCcceEEEEECCCCCEEEEEe-CCCcEEEEeCCcccCCccee
Q 043172 403 DGKQLLSSGG-DG----QVYHWDLRTR--TCIHRAVDEGCINGTALCTSPDGTFFAAGS-DSGIVNVYNRQEFLGGKRKP 474 (564)
Q Consensus 403 dg~~l~s~s~-dg----~V~lwD~~~~--~~~~~~~~~~~~~i~~l~~sp~g~~lasgs-~dg~V~iwd~~~~~~~~~~~ 474 (564)
||+.|+..+. +| .+.+|++..+ .....+...........+|+|+|++|+..+ .+|...||.+... .....
T Consensus 241 DG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~--~~g~~ 318 (428)
T PRK01029 241 RKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQID--PEGQS 318 (428)
T ss_pred CCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECc--ccccc
Confidence 9998887653 22 3444777653 122233322212235689999999888766 4665555544321 00022
Q ss_pred eEEccccccceeEEEEcCCCcEEEEEecCC-CCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEc-C--C
Q 043172 475 IKTIENLTTKVDFMKFNNDAQILAICSTMK-KNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGN-A--A 550 (564)
Q Consensus 475 ~~~~~~~~~~I~~l~fspdg~~La~~s~~~-d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs-~--d 550 (564)
...+..+...+....|||||+.|+..+... ...|.+|++.+++....... ...+....|+|||++|+... . .
T Consensus 319 ~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~----~~~~~~p~wSpDG~~L~f~~~~~g~ 394 (428)
T PRK01029 319 PRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS----PENKESPSWAIDSLHLVYSAGNSNE 394 (428)
T ss_pred eEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC----CCCccceEECCCCCEEEEEECCCCC
Confidence 333444445677899999999998876521 24799999988876442211 13467789999999887543 2 3
Q ss_pred CeEEEEEcCCC
Q 043172 551 GKVFLYKLNHY 561 (564)
Q Consensus 551 G~V~lw~l~~~ 561 (564)
+.|++|++...
T Consensus 395 ~~L~~vdl~~g 405 (428)
T PRK01029 395 SELYLISLITK 405 (428)
T ss_pred ceEEEEECCCC
Confidence 46788887654
No 250
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=1.2e-11 Score=131.19 Aligned_cols=216 Identities=14% Similarity=0.162 Sum_probs=142.5
Q ss_pred CCCCeeEEEEcCCCCEEEEEeC-CC--cEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEE-eCCC--eEEEEE
Q 043172 261 STGPINSVQFHRNAQLLLVAGL-DR--RLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIA-GRRK--FFYSLD 334 (564)
Q Consensus 261 h~~~V~~l~fspdg~~l~s~s~-dg--~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~-~~dg--~i~iwd 334 (564)
+...+.+..|||||+.|+..+. ++ .|.+|++.++....+.. ........+|+|+|+.|+.. +.++ .|++||
T Consensus 216 ~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~---~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d 292 (448)
T PRK04792 216 SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTS---FPGINGAPRFSPDGKKLALVLSKDGQPEIYVVD 292 (448)
T ss_pred CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecC---CCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEE
Confidence 5668899999999998887654 33 57777776543323322 23344578999999988765 4455 488889
Q ss_pred CCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCC---CeEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEEe
Q 043172 335 LVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNE---GYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSG 411 (564)
Q Consensus 335 l~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d---g~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s 411 (564)
+.+++..++. .+.. ......|+|+|+.|++.+.. ..|+++++.+++..............+|+|+|++|+..+
T Consensus 293 l~tg~~~~lt---~~~~-~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~ 368 (448)
T PRK04792 293 IATKALTRIT---RHRA-IDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVN 368 (448)
T ss_pred CCCCCeEECc---cCCC-CccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEE
Confidence 9888765432 2221 35678999999988876642 367888888877544322223344678999999988776
Q ss_pred CC-C--eEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCC-C--cEEEEeCCcccCCcceeeEEccccccce
Q 043172 412 GD-G--QVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDS-G--IVNVYNRQEFLGGKRKPIKTIENLTTKV 485 (564)
Q Consensus 412 ~d-g--~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~d-g--~V~iwd~~~~~~~~~~~~~~~~~~~~~I 485 (564)
.. + .|+++|+.++... .+.... ......|+|+|++|+..+.. | .+.+++... .....+..+.+.+
T Consensus 369 ~~~g~~~I~~~dl~~g~~~-~lt~~~--~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G------~~~~~l~~~~g~~ 439 (448)
T PRK04792 369 RTNGKFNIARQDLETGAMQ-VLTSTR--LDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG------RFKARLPAGQGEV 439 (448)
T ss_pred ecCCceEEEEEECCCCCeE-EccCCC--CCCCceECCCCCEEEEEEecCCceEEEEEECCC------CceEECcCCCCCc
Confidence 53 3 5777888877643 232221 12345799999988776543 3 366777643 3444555555667
Q ss_pred eEEEEcC
Q 043172 486 DFMKFNN 492 (564)
Q Consensus 486 ~~l~fsp 492 (564)
...+|+|
T Consensus 440 ~~p~Wsp 446 (448)
T PRK04792 440 KSPAWSP 446 (448)
T ss_pred CCCccCC
Confidence 7788887
No 251
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.45 E-value=1.8e-11 Score=124.85 Aligned_cols=191 Identities=16% Similarity=0.160 Sum_probs=154.4
Q ss_pred eCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEc--------------------CCCCEEEEEeCCCeE
Q 043172 316 PDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVS--------------------PDSSVIAFVGNEGYI 375 (564)
Q Consensus 316 pdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~s--------------------pdg~~la~~~~dg~I 375 (564)
|.+.++|....+|++++|+...++...-.....+-.....+..|. -+...++.|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 456788888999999999999887654333333333344444441 234578888889999
Q ss_pred EEEECCCCcEEEEee---ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEE
Q 043172 376 LLVSSKTKELIGTLK---MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAA 452 (564)
Q Consensus 376 ~lwd~~t~~~~~~~~---~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~las 452 (564)
.+|++..++....+. |.+.|.++.++.+-..|.+++.|+.+..|+....+.+..+..... .+.+++++|+|..+++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~-~~~sl~is~D~~~l~~ 161 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKP-LVSSLCISPDGKILLT 161 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCC-ccceEEEcCCCCEEEe
Confidence 999999999988887 889999999999999999999999999999999998888876554 5789999999999998
Q ss_pred EeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCC-----CcEEEEEecCCCCeEEEEEcCC
Q 043172 453 GSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNND-----AQILAICSTMKKNSLKLIHIPS 515 (564)
Q Consensus 453 gs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspd-----g~~La~~s~~~d~~I~lwdl~s 515 (564)
++. .|.+||+.+. +.+.+|.+|.++|++++|..+ |.+++++... ...+.+|-+..
T Consensus 162 as~--~ik~~~~~~k-----evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~-~r~i~~w~v~~ 221 (541)
T KOG4547|consen 162 ASR--QIKVLDIETK-----EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAA-ERGITVWVVEK 221 (541)
T ss_pred ccc--eEEEEEccCc-----eEEEEecCCCcceEEEEEEEeccccccceeeecccc-ccceeEEEEEc
Confidence 864 7999999998 999999999999999999887 7777665543 56677776643
No 252
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.44 E-value=1e-11 Score=118.55 Aligned_cols=284 Identities=13% Similarity=0.144 Sum_probs=180.4
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCC---ceeEEEEeCC------------cCeEEEEEeeCC--CEEEEE
Q 043172 262 TGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRN---TKIQSIFLED------------CPVRKASFLPDG--SQAIIA 324 (564)
Q Consensus 262 ~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~---~~~~~~~~~~------------~~I~~l~fspdg--~~l~s~ 324 (564)
..-|.+|.|...|.+||||..+|.|.+|.-..... .....++.|. ..|..+.|.+++ ..++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 35789999999999999999999999997643221 1222333332 368889999865 456677
Q ss_pred eCCCeEEEEECCCCceeeecc-cc-ccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee--ecCcEEEEEE
Q 043172 325 GRRKFFYSLDLVKAKADKIGP-LV-GREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK--MNGTVRSLAF 400 (564)
Q Consensus 325 ~~dg~i~iwdl~~~~~~~~~~-~~-~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~--~~~~V~~l~~ 400 (564)
+.+++|++|.+......+-.. +. ......+..+.. .+.+..+-.+. ..+.+.+. |...|+++.+
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~------p~~~~~~~~ve------a~prRv~aNaHtyhiNSIS~ 172 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRL------PVEGRHDLEVE------ASPRRVYANAHTYHINSISV 172 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeec------eeeccccceee------eeeeeeccccceeEeeeeee
Confidence 889999999987654322000 00 000011222211 11111111110 11223333 7788999999
Q ss_pred ecCCCEEEEEeCCCeEEEEECCCCceeEEEee---cC----CcceEEEEECCC-CCEEEEEeCCCcEEEEeCCccc----
Q 043172 401 ADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVD---EG----CINGTALCTSPD-GTFFAAGSDSGIVNVYNRQEFL---- 468 (564)
Q Consensus 401 spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~---~~----~~~i~~l~~sp~-g~~lasgs~dg~V~iwd~~~~~---- 468 (564)
+.|+..++++ .|=.|.+|++.-...-..+.+ +. ..-|++..|+|. .++|+..+..|+|++-|++...
T Consensus 173 NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~ 251 (433)
T KOG1354|consen 173 NSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDA 251 (433)
T ss_pred cCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcc
Confidence 9999988876 467899999975333222222 11 113678889986 4688888999999999998531
Q ss_pred -------CCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcC-CCceeccCCCCCCC------------
Q 043172 469 -------GGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIP-SYNVFSNWPPANRN------------ 528 (564)
Q Consensus 469 -------~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~-s~~~~~~~~~~~~~------------ 528 (564)
...+....-+..-...|+.+.|+++|+|+++-.. -+|+|||+. ..+++..++.+..-
T Consensus 252 hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy---ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~ 328 (433)
T KOG1354|consen 252 HSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY---LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDA 328 (433)
T ss_pred hhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc---ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccc
Confidence 0011111222334467899999999999998764 789999994 44444444443210
Q ss_pred CCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCCC
Q 043172 529 LQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNHY 561 (564)
Q Consensus 529 ~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~~ 561 (564)
...-.-++||-++.++++|+....+++|++..+
T Consensus 329 IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 329 IFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred hhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 111245789999999999999999999996543
No 253
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.41 E-value=2.5e-11 Score=125.40 Aligned_cols=290 Identities=12% Similarity=0.174 Sum_probs=204.2
Q ss_pred CCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCC-------------ceeEEEEeCCcCeEEEEEeeCCCEEEEE
Q 043172 258 DESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRN-------------TKIQSIFLEDCPVRKASFLPDGSQAIIA 324 (564)
Q Consensus 258 ~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~-------------~~~~~~~~~~~~I~~l~fspdg~~l~s~ 324 (564)
.-|......|++|+....++++||.||.+++..+.+.+. ..-+++.+|...|.-+.|+.+.+.|-++
T Consensus 10 ~iPnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtS 89 (1189)
T KOG2041|consen 10 GIPNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTS 89 (1189)
T ss_pred CCCCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccccccccc
Confidence 345667899999999999999999999999998864321 1234677899999999999999999999
Q ss_pred eCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeeecCcEEEEEEecCC
Q 043172 325 GRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLKMNGTVRSLAFADDG 404 (564)
Q Consensus 325 ~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg 404 (564)
..+|.|.||-+-.|....-. +.......|.+++|+.+|..|+.+..||.|.+=.+.....-..--.......+.|++|.
T Consensus 90 Dt~GlIiVWmlykgsW~EEM-iNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~ 168 (1189)
T KOG2041|consen 90 DTSGLIIVWMLYKGSWCEEM-INNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDL 168 (1189)
T ss_pred CCCceEEEEeeecccHHHHH-hhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccH
Confidence 99999999999888653211 22333457899999999999999999999998887654432211112235578999999
Q ss_pred CEEEEEeCCCeEEEEECCCC-------ceeEEEee---cCCcceEEEEEC--------CCCCEEEEEeCCCcEEEEeCCc
Q 043172 405 KQLLSSGGDGQVYHWDLRTR-------TCIHRAVD---EGCINGTALCTS--------PDGTFFAAGSDSGIVNVYNRQE 466 (564)
Q Consensus 405 ~~l~s~s~dg~V~lwD~~~~-------~~~~~~~~---~~~~~i~~l~~s--------p~g~~lasgs~dg~V~iwd~~~ 466 (564)
+.++.+-.+|.+.+||.... .|...... ..+..+..++|. |+...||++...|.+.|-.-..
T Consensus 169 ~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eN 248 (1189)
T KOG2041|consen 169 EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEN 248 (1189)
T ss_pred HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcC
Confidence 99998889999999997632 12111111 111124455553 5677999999999998876554
Q ss_pred ccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCC-------CeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeC
Q 043172 467 FLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKK-------NSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSP 539 (564)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d-------~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fsp 539 (564)
. +.|+..-. ...|..+.|+++|..||+++...| +.|.++. +-|..+..+.+ +..-|++++|-.
T Consensus 249 D----~~Pvv~dt--gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkv---pg~~It~lsWEg 318 (1189)
T KOG2041|consen 249 D----PEPVVVDT--GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKV---PGSCITGLSWEG 318 (1189)
T ss_pred C----CCCeEEec--ccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEec---CCceeeeeEEcC
Confidence 3 34443333 367889999999999999987432 2444443 33444444333 346799999988
Q ss_pred CCCEEEEEcCCCeEEEEEcC
Q 043172 540 GGGFMAVGNAAGKVFLYKLN 559 (564)
Q Consensus 540 dg~~Lasgs~dG~V~lw~l~ 559 (564)
.|-.+|.+ -|+.|++=+++
T Consensus 319 ~gLriA~A-vdsfiyfanIR 337 (1189)
T KOG2041|consen 319 TGLRIAIA-VDSFIYFANIR 337 (1189)
T ss_pred CceEEEEE-ecceEEEEeec
Confidence 77766665 36666665543
No 254
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.37 E-value=8.4e-10 Score=109.68 Aligned_cols=190 Identities=12% Similarity=0.150 Sum_probs=136.9
Q ss_pred EcCCCCEEEEEeCCCcEEEEEecCCCCceeEEE-EeC---C-----cCeEEEE-Eee-CCCEEEEEeCCCeEEEEECCCC
Q 043172 270 FHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSI-FLE---D-----CPVRKAS-FLP-DGSQAIIAGRRKFFYSLDLVKA 338 (564)
Q Consensus 270 fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~-~~~---~-----~~I~~l~-fsp-dg~~l~s~~~dg~i~iwdl~~~ 338 (564)
.+.||+.++.. ..|.|.+||........+..- ... . .|..-+. |++ +|.+++..+ +|...|.+...+
T Consensus 274 ~nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~ 351 (668)
T COG4946 274 ANSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDG 351 (668)
T ss_pred cCCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCC
Confidence 34577776654 467899998765432222110 000 0 1111222 444 788888887 466777777666
Q ss_pred ceeeeccccccCCcceEEEEEcCCCCEEEEEeCCC-eEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEEeCCCeEE
Q 043172 339 KADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEG-YILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSGGDGQVY 417 (564)
Q Consensus 339 ~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg-~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s~dg~V~ 417 (564)
-..++ ++.. .|....+..++.-++.|..|| .+-|+|..+++.......-+.|.++..+|+|++++++.....|.
T Consensus 352 ~~iqv----~~~~-~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~ 426 (668)
T COG4946 352 YSIQV----GKKG-GVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELW 426 (668)
T ss_pred eeEEc----CCCC-ceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEE
Confidence 65443 2232 488888888888899999998 89999999998776666778999999999999999999999999
Q ss_pred EEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCC----cEEEEeCCcc
Q 043172 418 HWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSG----IVNVYNRQEF 467 (564)
Q Consensus 418 lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg----~V~iwd~~~~ 467 (564)
+.|+.+++.... ......-|+.++|||+++|+|-+--+| .|++||+...
T Consensus 427 vididngnv~~i-dkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~ 479 (668)
T COG4946 427 VIDIDNGNVRLI-DKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG 479 (668)
T ss_pred EEEecCCCeeEe-cccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC
Confidence 999999886543 323333589999999999999887665 5889998874
No 255
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=1.8e-10 Score=116.82 Aligned_cols=235 Identities=12% Similarity=0.150 Sum_probs=159.9
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCC--CEEEEE-----eCCCeEEEEECCCC
Q 043172 266 NSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDG--SQAIIA-----GRRKFFYSLDLVKA 338 (564)
Q Consensus 266 ~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg--~~l~s~-----~~dg~i~iwdl~~~ 338 (564)
++..|++|..+.+-- ..+.+.+|++... .... -..|...|..+.+||.+ ..|++- |.-..++||...-.
T Consensus 129 W~~qfs~dEsl~arl-v~nev~f~~~~~f-~~~~--~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~ 204 (566)
T KOG2315|consen 129 WVPQFSIDESLAARL-VSNEVQFYDLGSF-KTIQ--HKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEE 204 (566)
T ss_pred cccccccchhhhhhh-hcceEEEEecCCc-ccee--eeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccc
Confidence 688999987654332 2467999998752 2222 23356778899999863 344432 44568999987633
Q ss_pred ceeeeccccccCCcceEEEEEcCCCC-EEEEEeC--C---------CeEEEEECCCCcEEEEeeecCcEEEEEEecCCCE
Q 043172 339 KADKIGPLVGREEKSLEFFEVSPDSS-VIAFVGN--E---------GYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQ 406 (564)
Q Consensus 339 ~~~~~~~~~~~~~~~v~~~~~spdg~-~la~~~~--d---------g~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~ 406 (564)
...+...........--.+.|++-|. +|+.++. | ..++++++........+...++|.++.|+|+|+.
T Consensus 205 ~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~E 284 (566)
T KOG2315|consen 205 GQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGRE 284 (566)
T ss_pred cccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCE
Confidence 22111111111111223578887665 3333332 2 4688888886566666667999999999999987
Q ss_pred EEEEe--CCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeC---CCcEEEEeCCcccCCcceeeEEcccc
Q 043172 407 LLSSG--GDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSD---SGIVNVYNRQEFLGGKRKPIKTIENL 481 (564)
Q Consensus 407 l~s~s--~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~---dg~V~iwd~~~~~~~~~~~~~~~~~~ 481 (564)
++++. .=..+.|||++ +..+..+... +-.++-|+|.|++|+.++- .|.|-|||+.+. +.+..+...
T Consensus 285 F~VvyGfMPAkvtifnlr-~~~v~df~eg---pRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~-----K~i~~~~a~ 355 (566)
T KOG2315|consen 285 FAVVYGFMPAKVTIFNLR-GKPVFDFPEG---PRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR-----KLIAKFKAA 355 (566)
T ss_pred EEEEEecccceEEEEcCC-CCEeEeCCCC---CccceEECCCCCEEEEeecCCCCCceEEEeccch-----hhccccccC
Confidence 77654 34689999997 5666555432 3367899999999887764 589999999886 788777754
Q ss_pred ccceeEEEEcCCCcEEEEEecCC----CCeEEEEEcCC
Q 043172 482 TTKVDFMKFNNDAQILAICSTMK----KNSLKLIHIPS 515 (564)
Q Consensus 482 ~~~I~~l~fspdg~~La~~s~~~----d~~I~lwdl~s 515 (564)
.-+-+.|+|||+++++++... |+.++|||...
T Consensus 356 --~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 356 --NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred --CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 345589999999999998752 78899999864
No 256
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.36 E-value=2.4e-10 Score=114.60 Aligned_cols=278 Identities=12% Similarity=0.102 Sum_probs=190.1
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCC------------
Q 043172 261 STGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRK------------ 328 (564)
Q Consensus 261 h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg------------ 328 (564)
-.-++..++|||.|.+|++....+ |.+|.-.. ...+..+. ...|..+.|+|.+++|.+-++.+
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~--~~~l~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~ 105 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAG-VECWGGPS--KAKLVRFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFT 105 (561)
T ss_pred cCcchhheeecCcchheehhhccc-eEEccccc--hhheeeee--cCCceecccCcccceeeeeccCCccChhhccCCcc
Confidence 345899999999999999886554 88895443 23444433 34689999999999999875443
Q ss_pred ---eEEEEECCCCceeeeccccccCCcceE-EEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE-Eee--ecCcEEEEEEe
Q 043172 329 ---FFYSLDLVKAKADKIGPLVGREEKSLE-FFEVSPDSSVIAFVGNEGYILLVSSKTKELIG-TLK--MNGTVRSLAFA 401 (564)
Q Consensus 329 ---~i~iwdl~~~~~~~~~~~~~~~~~~v~-~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~-~~~--~~~~V~~l~~s 401 (564)
.+.+||+.+|.+........... ..+ .+.|+-+..++|-. ....++|+++ ++.... .+. ....|..+.|+
T Consensus 106 ~~n~~~vwd~~sg~iv~sf~~~~q~~-~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsis 182 (561)
T COG5354 106 SKNNVFVWDIASGMIVFSFNGISQPY-LGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSIS 182 (561)
T ss_pred ccCceeEEeccCceeEeeccccCCcc-cccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEec
Confidence 48999999998855433322221 133 68889888887755 3467999997 433221 111 23578999999
Q ss_pred cCC--CEEEE-----EeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeC-----------CCcEEEEe
Q 043172 402 DDG--KQLLS-----SGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSD-----------SGIVNVYN 463 (564)
Q Consensus 402 pdg--~~l~s-----~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~-----------dg~V~iwd 463 (564)
|-+ ..|+. .+..+++++|.+..+..+.+-..-. ..-..+.|.+.|.+|++--. ...++|++
T Consensus 183 P~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk-~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~ 261 (561)
T COG5354 183 PEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFK-VSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLR 261 (561)
T ss_pred CCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEe-ecccEEEEecCCceEEEEEEEeeecccceeccceEEEEe
Confidence 954 34443 3567899999998776655433222 22357889999987765321 24577888
Q ss_pred CCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCE
Q 043172 464 RQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGF 543 (564)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~ 543 (564)
+.. ..+.......++|...+|+|.+..+++.++..+..+.+++++.. +...+|. +.=+.+.|||.+++
T Consensus 262 ~~e------~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe-----~~rNT~~fsp~~r~ 329 (561)
T COG5354 262 ITE------RSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPE-----QKRNTIFFSPHERY 329 (561)
T ss_pred ecc------cccceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEecCC-----cccccccccCcccE
Confidence 774 33333335689999999999999999888666889999999876 4444433 33456788999888
Q ss_pred EEEEc---CCCeEEEEEcC
Q 043172 544 MAVGN---AAGKVFLYKLN 559 (564)
Q Consensus 544 Lasgs---~dG~V~lw~l~ 559 (564)
+++++ ..|.|-+|+..
T Consensus 330 il~agF~nl~gni~i~~~~ 348 (561)
T COG5354 330 ILFAGFDNLQGNIEIFDPA 348 (561)
T ss_pred EEEecCCccccceEEeccC
Confidence 88755 44678888754
No 257
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.35 E-value=2.8e-10 Score=106.94 Aligned_cols=268 Identities=17% Similarity=0.221 Sum_probs=172.9
Q ss_pred CCcEEEEEecCCCCceeEEEE-eCCcCeEEEEEee---CCC-EEEEEeCCCeEEEEECCCCcee-eeccccccCC--cce
Q 043172 283 DRRLRFFQIDGKRNTKIQSIF-LEDCPVRKASFLP---DGS-QAIIAGRRKFFYSLDLVKAKAD-KIGPLVGREE--KSL 354 (564)
Q Consensus 283 dg~I~lwd~~~~~~~~~~~~~-~~~~~I~~l~fsp---dg~-~l~s~~~dg~i~iwdl~~~~~~-~~~~~~~~~~--~~v 354 (564)
.|.+.+|++.......+..++ .....+..+.|.- +|. .++-+-.+|.|.++........ .+..+....- ...
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~ 124 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA 124 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence 467888887643322222222 2345567777763 455 4455567888998876543221 1112221111 124
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE--Eee-ecCcEEEEEEec-CCCEEEEEeCCCeEEEEECCC-CceeEE
Q 043172 355 EFFEVSPDSSVIAFVGNEGYILLVSSKTKELIG--TLK-MNGTVRSLAFAD-DGKQLLSSGGDGQVYHWDLRT-RTCIHR 429 (564)
Q Consensus 355 ~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~--~~~-~~~~V~~l~~sp-dg~~l~s~s~dg~V~lwD~~~-~~~~~~ 429 (564)
.++.|++.+..++++-.+|.+.+.+...+.... ..+ |.-.+....|+. +.+.+++||.|+.+..||++. ++.+..
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~ 204 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH 204 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee
Confidence 578889999999999999999977765554443 445 888888888876 457899999999999999993 444444
Q ss_pred EeecCCcceEEEEECC-CCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCc--EEEEEecCCCC
Q 043172 430 AVDEGCINGTALCTSP-DGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQ--ILAICSTMKKN 506 (564)
Q Consensus 430 ~~~~~~~~i~~l~~sp-~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~--~La~~s~~~d~ 506 (564)
-..-|..+|.+|.-+| .+.+|++|+.|-.|++||.++. .+|+..-. ..+.|+.+.++|.-. +|+++- -+
T Consensus 205 n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm----~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CM---h~ 276 (339)
T KOG0280|consen 205 NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNM----GKPLFKAK-VGGGVWRIKHHPEIFHRLLAACM---HN 276 (339)
T ss_pred cceeeecceEEEecCCCCCceEEEeccccceeeeehhcc----cCccccCc-cccceEEEEecchhhhHHHHHHH---hc
Confidence 2333455788887775 4679999999999999999954 26666544 348899999999543 344333 34
Q ss_pred eEEEEEcCCCcee--ccCCCCCCCCCCcEEEEEeCCCCEEEEEc-CCCeEE-EEEc
Q 043172 507 SLKLIHIPSYNVF--SNWPPANRNLQYPRCLDFSPGGGFMAVGN-AAGKVF-LYKL 558 (564)
Q Consensus 507 ~I~lwdl~s~~~~--~~~~~~~~~~~~V~~l~fspdg~~Lasgs-~dG~V~-lw~l 558 (564)
-.+|.++.....- ..++....|.+-+..-.|.....+||+++ .|..++ +|-.
T Consensus 277 G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~ 332 (339)
T KOG0280|consen 277 GAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLH 332 (339)
T ss_pred CceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeee
Confidence 5667666543221 23345555656566666654456788865 666655 7754
No 258
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.33 E-value=1.6e-09 Score=108.76 Aligned_cols=278 Identities=13% Similarity=0.155 Sum_probs=187.6
Q ss_pred CCeeEEEEcCCCCEEEEEeCCC---------------cEEEEEecCCCCceeEEEEeCCcC--eE-EEEEeeCCCEEEEE
Q 043172 263 GPINSVQFHRNAQLLLVAGLDR---------------RLRFFQIDGKRNTKIQSIFLEDCP--VR-KASFLPDGSQAIIA 324 (564)
Q Consensus 263 ~~V~~l~fspdg~~l~s~s~dg---------------~I~lwd~~~~~~~~~~~~~~~~~~--I~-~l~fspdg~~l~s~ 324 (564)
.-|.-+.|+|.++||.+=+... .+.+||+.++ ..+.++.....+ .. -+.|+-+.++++-.
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg--~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv 149 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASG--MIVFSFNGISQPYLGWPVLKFSIDDKYVARV 149 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCc--eeEeeccccCCcccccceeeeeecchhhhhh
Confidence 4699999999999999865433 4899998744 466666555544 44 57788887776644
Q ss_pred eCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCC--EEEE-----EeCCCeEEEEECCCCcEEEEee-ecCcEE
Q 043172 325 GRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSS--VIAF-----VGNEGYILLVSSKTKELIGTLK-MNGTVR 396 (564)
Q Consensus 325 ~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~--~la~-----~~~dg~I~lwd~~t~~~~~~~~-~~~~V~ 396 (564)
....++|+++ ++.... ..+.......|..+.|+|.++ .||+ .+..+.+++|.+..+..+.+-. ....=.
T Consensus 150 -v~~sl~i~e~-t~n~~~-~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~ 226 (561)
T COG5354 150 -VGSSLYIHEI-TDNIEE-HPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGV 226 (561)
T ss_pred -ccCeEEEEec-CCcccc-CchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeeccc
Confidence 2346999997 554332 112222223688999999643 3443 3456899999998777665544 233345
Q ss_pred EEEEecCCCEEEEEe-----------CCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEE--eCCCcEEEEe
Q 043172 397 SLAFADDGKQLLSSG-----------GDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAG--SDSGIVNVYN 463 (564)
Q Consensus 397 ~l~~spdg~~l~s~s-----------~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasg--s~dg~V~iwd 463 (564)
.+.|++.|.+|++-- ....++|+++....+.... .-...|..++|.|.++.+++. -..-.+.++|
T Consensus 227 qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~--~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~ 304 (561)
T COG5354 227 QLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK--DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFD 304 (561)
T ss_pred EEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec--cccccceeeeecccCCceeEEecccccceeecc
Confidence 688999998776532 1356899998855544332 223468899999998876655 4688999999
Q ss_pred CCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCC-CCeEEEEEcCCCceec-cCCCCCCCCCCcEEEEEeCCC
Q 043172 464 RQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMK-KNSLKLIHIPSYNVFS-NWPPANRNLQYPRCLDFSPGG 541 (564)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~-d~~I~lwdl~s~~~~~-~~~~~~~~~~~V~~l~fspdg 541 (564)
++. .....+ ..+.=..+.|||.++++++++.++ .|.+-+||....-... .+... ..+-+.|||+|
T Consensus 305 lr~------Nl~~~~--Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~-----n~s~~~wspd~ 371 (561)
T COG5354 305 LRG------NLRFYF--PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL-----NTSYCDWSPDG 371 (561)
T ss_pred ccc------ceEEec--CCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC-----CceEeeccCCc
Confidence 987 333333 244556788999999999877632 4789999987654332 33222 23456899999
Q ss_pred CEEEEEc------CCCeEEEEEcCC
Q 043172 542 GFMAVGN------AAGKVFLYKLNH 560 (564)
Q Consensus 542 ~~Lasgs------~dG~V~lw~l~~ 560 (564)
+|+.+.. .|..|.||++.+
T Consensus 372 qF~~~~~ts~k~~~Dn~i~l~~v~g 396 (561)
T COG5354 372 QFYDTDTTSEKLRVDNSIKLWDVYG 396 (561)
T ss_pred eEEEecCCCcccccCcceEEEEecC
Confidence 9988764 367799999865
No 259
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.32 E-value=1.1e-11 Score=124.59 Aligned_cols=284 Identities=15% Similarity=0.109 Sum_probs=190.4
Q ss_pred CCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCC-----CCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEE
Q 043172 258 DESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGK-----RNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYS 332 (564)
Q Consensus 258 ~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~-----~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~i 332 (564)
..+|+..|..++--.+.+-+++++.|++|++|.+... +..+..+++.|..+|..+.|..+-++++++ |+-|++
T Consensus 731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHl 808 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHL 808 (1034)
T ss_pred ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCccee
Confidence 4689999999988888889999999999999998642 233556778899999999999998888765 788999
Q ss_pred EECCCCceeeeccccccCCcceEEEEEcC--CCCEEEEE-eCCCeEEEEECCCCcEEEEee------ecCcEEEEEEecC
Q 043172 333 LDLVKAKADKIGPLVGREEKSLEFFEVSP--DSSVIAFV-GNEGYILLVSSKTKELIGTLK------MNGTVRSLAFADD 403 (564)
Q Consensus 333 wdl~~~~~~~~~~~~~~~~~~v~~~~~sp--dg~~la~~-~~dg~I~lwd~~t~~~~~~~~------~~~~V~~l~~spd 403 (564)
||.--++......-...+ ..+..+..-| +...+..+ +...+|+++|.+...+...++ .++.+.+++..+.
T Consensus 809 WDPFigr~Laq~~dapk~-~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~ 887 (1034)
T KOG4190|consen 809 WDPFIGRLLAQMEDAPKE-GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADK 887 (1034)
T ss_pred ecccccchhHhhhcCccc-CCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccC
Confidence 998777653211111111 1233333333 33444443 567999999999999988887 2356899999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEE-EeCCcccCCcceeeEEccccc
Q 043172 404 GKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNV-YNRQEFLGGKRKPIKTIENLT 482 (564)
Q Consensus 404 g~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~i-wd~~~~~~~~~~~~~~~~~~~ 482 (564)
|+.++++-.+|.|.+.|.++|+.+..|..-.+. ...++ .|..+.++....+.++.| |....+ ....+.....
T Consensus 888 GN~lAa~LSnGci~~LDaR~G~vINswrpmecd-llqla-apsdq~L~~saldHslaVnWhaldg-----imh~q~kppp 960 (1034)
T KOG4190|consen 888 GNKLAAALSNGCIAILDARNGKVINSWRPMECD-LLQLA-APSDQALAQSALDHSLAVNWHALDG-----IMHLQDKPPP 960 (1034)
T ss_pred cchhhHHhcCCcEEEEecCCCceeccCCcccch-hhhhc-CchhHHHHhhcccceeEeeehhcCC-----eeeeccCCCC
Confidence 999999999999999999999999888764432 22222 356667777777888888 876654 2222222211
Q ss_pred cceeEEEEcCCCcEEEEEecCCCCeEEEEEcC-CCceeccCC--CCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEE
Q 043172 483 TKVDFMKFNNDAQILAICSTMKKNSLKLIHIP-SYNVFSNWP--PANRNLQYPRCLDFSPGGGFMAVGNAAGKVFL 555 (564)
Q Consensus 483 ~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~-s~~~~~~~~--~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~l 555 (564)
.+..- ...-|..|+++.. .+.+.+|.-. ......++. ....-.+..++++.-|=..-+..|+..|.|.+
T Consensus 961 epahf--lqsvgpSLV~a~~--Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 961 EPAHF--LQSVGPSLVTAQN--GNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred cchhh--hhccCceeEEecc--CcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 11111 1123455666655 4566666321 111111111 11122366788888887777778999998876
No 260
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.31 E-value=3.7e-10 Score=108.17 Aligned_cols=252 Identities=12% Similarity=0.142 Sum_probs=180.6
Q ss_pred ecccCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEE-EeCCcCeEEEEEeeCCCEEEEEeCCCeEE
Q 043172 253 IDANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSI-FLEDCPVRKASFLPDGSQAIIAGRRKFFY 331 (564)
Q Consensus 253 ~~~~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~-~~~~~~I~~l~fspdg~~l~s~~~dg~i~ 331 (564)
+-.....||...|+....-|-..-+++++.|.+++||--... .+.-.++ +....+++++.+.+....|+++-..|++.
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds-~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvt 93 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDS-GQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVT 93 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccc-cccCchhhhhCCCCceEeeeeccceEEEEEEecceEE
Confidence 334456789999999999998888999999999999954221 1111111 23456889999999999999999999998
Q ss_pred EEECCCC--ceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEE
Q 043172 332 SLDLVKA--KADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLS 409 (564)
Q Consensus 332 iwdl~~~--~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s 409 (564)
-+.+..- +.........|. ..+..+.|+-....+++.+.|..+..--.+.+..+..+......+++.|.-. +.+.
T Consensus 94 efs~sedfnkm~~~r~~~~h~-~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~fv 170 (404)
T KOG1409|consen 94 EFALSEDFNKMTFLKDYLAHQ-ARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YAFV 170 (404)
T ss_pred EEEhhhhhhhcchhhhhhhhh-cceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EEEe
Confidence 8866432 111122233333 4688889998889999999988777666666666655544333333333322 5556
Q ss_pred EeCCCeEEEEECCC--CceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeE
Q 043172 410 SGGDGQVYHWDLRT--RTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDF 487 (564)
Q Consensus 410 ~s~dg~V~lwD~~~--~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~ 487 (564)
|...|.|.+..+.. -..+.++.+ +...+++++|.|..+.+.+|..|..|.+||+... +.....+.+|...|..
T Consensus 171 Gd~~gqvt~lr~~~~~~~~i~~~~~-h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~----~g~~~el~gh~~kV~~ 245 (404)
T KOG1409|consen 171 GDHSGQITMLKLEQNGCQLITTFNG-HTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGR----KGTAYELQGHNDKVQA 245 (404)
T ss_pred cccccceEEEEEeecCCceEEEEcC-cccceEEEEEcCCCcEEEeccccCceEEEeccCC----cceeeeeccchhhhhh
Confidence 66667666655543 334444443 4457899999999999999999999999999754 3455667788889999
Q ss_pred EEEcCCCcEEEEEecCCCCeEEEEEcCC
Q 043172 488 MKFNNDAQILAICSTMKKNSLKLIHIPS 515 (564)
Q Consensus 488 l~fspdg~~La~~s~~~d~~I~lwdl~s 515 (564)
+...+-.+.|.+++. ||.|-+|++..
T Consensus 246 l~~~~~t~~l~S~~e--dg~i~~w~mn~ 271 (404)
T KOG1409|consen 246 LSYAQHTRQLISCGE--DGGIVVWNMNV 271 (404)
T ss_pred hhhhhhheeeeeccC--CCeEEEEeccc
Confidence 988888888998888 99999999853
No 261
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.30 E-value=8.4e-09 Score=103.90 Aligned_cols=237 Identities=14% Similarity=0.123 Sum_probs=151.5
Q ss_pred EcCCCCEEEEEeC----------CCcEEEEEecCCCCceeEEEEeCCc-------CeEEEEEeeCCCEEEEEe-C-CCeE
Q 043172 270 FHRNAQLLLVAGL----------DRRLRFFQIDGKRNTKIQSIFLEDC-------PVRKASFLPDGSQAIIAG-R-RKFF 330 (564)
Q Consensus 270 fspdg~~l~s~s~----------dg~I~lwd~~~~~~~~~~~~~~~~~-------~I~~l~fspdg~~l~s~~-~-dg~i 330 (564)
+||+++.|+++.. +..|.+||.. +...+..+..... ....++++|+|++|++.. . +..|
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~--t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V 130 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ--THLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAV 130 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECc--cCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEE
Confidence 9999998887765 7889999987 4456666654322 233788999999999876 3 6899
Q ss_pred EEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECC-CCcEE-EEee--ec--CcE-EEEEEec-
Q 043172 331 YSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSK-TKELI-GTLK--MN--GTV-RSLAFAD- 402 (564)
Q Consensus 331 ~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~-t~~~~-~~~~--~~--~~V-~~l~~sp- 402 (564)
.++|+.+++........+. ..-+..+.... ++.+ .||......+. +++.. .... +. .++ ..-.|.+
T Consensus 131 ~VvD~~~~kvv~ei~vp~~----~~vy~t~e~~~-~~~~-~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~ 204 (352)
T TIGR02658 131 GVVDLEGKAFVRMMDVPDC----YHIFPTANDTF-FMHC-RDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNK 204 (352)
T ss_pred EEEECCCCcEEEEEeCCCC----cEEEEecCCcc-EEEe-ecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcC
Confidence 9999999998664444321 22222332222 2222 33433333222 22211 1111 11 000 0014456
Q ss_pred CCCEEEEEeCCCeEEEEECCCC-----ceeEEEeec------CCcceEEEEECCCCCEEEEEe----------CCCcEEE
Q 043172 403 DGKQLLSSGGDGQVYHWDLRTR-----TCIHRAVDE------GCINGTALCTSPDGTFFAAGS----------DSGIVNV 461 (564)
Q Consensus 403 dg~~l~s~s~dg~V~lwD~~~~-----~~~~~~~~~------~~~~i~~l~~sp~g~~lasgs----------~dg~V~i 461 (564)
+|+++++... |+|++.|+... .....+... ......-++++|+++.+++.. ..+.|.+
T Consensus 205 dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~V 283 (352)
T TIGR02658 205 SGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFV 283 (352)
T ss_pred CCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEE
Confidence 8888877766 99999996543 222222111 122234499999999877743 1247999
Q ss_pred EeCCcccCCcceeeEEccccccceeEEEEcCCCc-EEEEEecCCCCeEEEEEcCCCceeccC
Q 043172 462 YNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQ-ILAICSTMKKNSLKLIHIPSYNVFSNW 522 (564)
Q Consensus 462 wd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~-~La~~s~~~d~~I~lwdl~s~~~~~~~ 522 (564)
+|..+. +.+..+.- ...+..|+|+||++ +|++.+.. .+.|.++|+.+++.+..+
T Consensus 284 iD~~t~-----kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~-s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 284 VDAKTG-----KRLRKIEL-GHEIDSINVSQDAKPLLYALSTG-DKTLYIFDAETGKELSSV 338 (352)
T ss_pred EECCCC-----eEEEEEeC-CCceeeEEECCCCCeEEEEeCCC-CCcEEEEECcCCeEEeee
Confidence 999887 77777763 56889999999999 77766643 788999999999988876
No 262
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.29 E-value=1e-11 Score=124.91 Aligned_cols=166 Identities=19% Similarity=0.260 Sum_probs=133.9
Q ss_pred ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCC--CCEEEEEeCCCcEEEEeCCccc
Q 043172 391 MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPD--GTFFAAGSDSGIVNVYNRQEFL 468 (564)
Q Consensus 391 ~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~--g~~lasgs~dg~V~iwd~~~~~ 468 (564)
|.+.|+++.|+.+|.+|++|+.|-.+.|||.-..+.++.+...|...|.++.|-|. .+.+++|..|..|++||+....
T Consensus 49 H~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~ 128 (758)
T KOG1310|consen 49 HTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSK 128 (758)
T ss_pred ccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEeccccc
Confidence 89999999999999999999999999999999999999999888889999999984 5699999999999999998532
Q ss_pred C-----CcceeeEEccccccceeEEEEcCCC-cEEEEEecCCCCeEEEEEcCCCcee-------ccCCCCCCCCCCcEEE
Q 043172 469 G-----GKRKPIKTIENLTTKVDFMKFNNDA-QILAICSTMKKNSLKLIHIPSYNVF-------SNWPPANRNLQYPRCL 535 (564)
Q Consensus 469 ~-----~~~~~~~~~~~~~~~I~~l~fspdg-~~La~~s~~~d~~I~lwdl~s~~~~-------~~~~~~~~~~~~V~~l 535 (564)
. +...+++.+.-|...|-.|+-.|++ ..+.+++. ||+|+-+|++....- ..+.......-...++
T Consensus 129 ~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasE--DGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~l 206 (758)
T KOG1310|consen 129 EGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASE--DGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCL 206 (758)
T ss_pred ccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecC--CcceeeecccCCccCCccccccHHHHHhchhhheeeee
Confidence 1 1235566677788999999999999 66777887 999999999753221 1111111122345789
Q ss_pred EEeCC-CCEEEEEcCCCeEEEEEc
Q 043172 536 DFSPG-GGFMAVGNAAGKVFLYKL 558 (564)
Q Consensus 536 ~fspd-g~~Lasgs~dG~V~lw~l 558 (564)
.++|. ..+||+|+.+-.+++||.
T Consensus 207 tisp~rp~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 207 TISPSRPYYLAVGGSDPFARLYDR 230 (758)
T ss_pred eecCCCCceEEecCCCchhhhhhh
Confidence 99995 458999999999999994
No 263
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.28 E-value=1.2e-11 Score=138.93 Aligned_cols=196 Identities=19% Similarity=0.242 Sum_probs=151.1
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCce
Q 043172 261 STGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKA 340 (564)
Q Consensus 261 h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~ 340 (564)
|-..|.++.=||..++.+||+.||.|++|....+.........+. ..|+.+.|+.+|+.+..+..||.+.+|.... +
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p-k- 2283 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQASP-K- 2283 (2439)
T ss_pred ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc-chhhhhhhcccCCceeeeccCCceeecccCC-c-
Confidence 445688899999999999999999999998875543333333344 7899999999999999999999999999872 2
Q ss_pred eeeccccccCCcceEEEEEcCCCCEEEEEeC---CCeEEEEECCC--CcEEEEeeecCcEEEEEEecCCCEEEEEeCCCe
Q 043172 341 DKIGPLVGREEKSLEFFEVSPDSSVIAFVGN---EGYILLVSSKT--KELIGTLKMNGTVRSLAFADDGKQLLSSGGDGQ 415 (564)
Q Consensus 341 ~~~~~~~~~~~~~v~~~~~spdg~~la~~~~---dg~I~lwd~~t--~~~~~~~~~~~~V~~l~~spdg~~l~s~s~dg~ 415 (564)
.......|. +....+.|-. ..+++++. ++.+.+||..- +...-..-|.+.++++++.|..+.|++||.+|.
T Consensus 2284 -~~~s~qchn-k~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~ 2359 (2439)
T KOG1064|consen 2284 -PYTSWQCHN-KALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGE 2359 (2439)
T ss_pred -ceeccccCC-ccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCc
Confidence 122233333 3566777764 56777654 58999999742 222222339999999999999999999999999
Q ss_pred EEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEcc
Q 043172 416 VYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIE 479 (564)
Q Consensus 416 V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~ 479 (564)
|++||++..+.++.|.. +. ...+|++|+..|.++||++... ..++++.
T Consensus 2360 v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s~~-----~ll~~~p 2407 (2439)
T KOG1064|consen 2360 VCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLSEF-----GLLHTFP 2407 (2439)
T ss_pred EEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEcccc-----chhhcCc
Confidence 99999999888877653 33 4569999999999999999876 5666554
No 264
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=5e-09 Score=109.67 Aligned_cols=193 Identities=16% Similarity=0.178 Sum_probs=129.8
Q ss_pred CeEEEEEeeCCCE-EEEEeC---CCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeC---CCeEEEEEC
Q 043172 308 PVRKASFLPDGSQ-AIIAGR---RKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGN---EGYILLVSS 380 (564)
Q Consensus 308 ~I~~l~fspdg~~-l~s~~~---dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~---dg~I~lwd~ 380 (564)
.+....|+|+|+. ++..+. ...|+++|+.+++...+....+ ......|+|||+.|+.... +..|+++++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g----~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl 264 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQG----MLVVSDVSKDGSKLLLTMAPKGQPDIYLYDT 264 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCC----cEEeeEECCCCCEEEEEEccCCCcEEEEEEC
Confidence 7788999999985 665442 4679999999998766544322 3456789999988776533 357999999
Q ss_pred CCCcEEEEeeecCcEEEEEEecCCCEEEEEeCC-C--eEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCC-
Q 043172 381 KTKELIGTLKMNGTVRSLAFADDGKQLLSSGGD-G--QVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDS- 456 (564)
Q Consensus 381 ~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s~d-g--~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~d- 456 (564)
.++.......+.+......|+|||+.|+..+.. + .|+++|+.++....... .+.. ...|+|+|++|+..+..
T Consensus 265 ~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~g~~---~~~~SPDG~~Ia~~~~~~ 340 (419)
T PRK04043 265 NTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-HGKN---NSSVSTYKNYIVYSSRET 340 (419)
T ss_pred CCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc-CCCc---CceECCCCCEEEEEEcCC
Confidence 888755433344434567899999988777642 2 79999998777643322 2222 24899999988876643
Q ss_pred --------CcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCC-CeEEEEEcCC
Q 043172 457 --------GIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKK-NSLKLIHIPS 515 (564)
Q Consensus 457 --------g~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d-~~I~lwdl~s 515 (564)
..|.++|+..+ ....+... .......|+|||+.|+..+.... ..+.++++..
T Consensus 341 ~~~~~~~~~~I~v~d~~~g------~~~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 341 NNEFGKNTFNLYLISTNSD------YIRRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CcccCCCCcEEEEEECCCC------CeEECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 25777787664 22333322 23345899999999888775422 2366666654
No 265
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.25 E-value=1e-08 Score=118.69 Aligned_cols=245 Identities=13% Similarity=0.112 Sum_probs=159.8
Q ss_pred EEEEEeeC-CCEEEEEeCCCeEEEEECCCCceeeecccccc-----------CCcceEEEEEcCCCCEEEEEeC-CCeEE
Q 043172 310 RKASFLPD-GSQAIIAGRRKFFYSLDLVKAKADKIGPLVGR-----------EEKSLEFFEVSPDSSVIAFVGN-EGYIL 376 (564)
Q Consensus 310 ~~l~fspd-g~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~-----------~~~~v~~~~~spdg~~la~~~~-dg~I~ 376 (564)
..+++++. +..+++-..++.|.+||........+.. .+. .-.....+++.++++.|+++.. ++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~-~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGS-TGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEcc-CCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 46788875 4455555677889999987544322211 111 0123578999999887766654 57899
Q ss_pred EEECCCCcEEEEeee------------------cCcEEEEEEec-CCCEEEEEeCCCeEEEEECCCCceeEEEeecC---
Q 043172 377 LVSSKTKELIGTLKM------------------NGTVRSLAFAD-DGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEG--- 434 (564)
Q Consensus 377 lwd~~t~~~~~~~~~------------------~~~V~~l~~sp-dg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~--- 434 (564)
++|+.++.. .++.. -....+++|+| ++..+++.+.++.|++||..++... .+...+
T Consensus 650 ~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~ 727 (1057)
T PLN02919 650 EIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYER 727 (1057)
T ss_pred EEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccc
Confidence 999877643 33311 11346899999 5666666677899999999876543 222110
Q ss_pred -----------CcceEEEEECCCCCE-EEEEeCCCcEEEEeCCcccCCcceee-----------EEccc--------ccc
Q 043172 435 -----------CINGTALCTSPDGTF-FAAGSDSGIVNVYNRQEFLGGKRKPI-----------KTIEN--------LTT 483 (564)
Q Consensus 435 -----------~~~i~~l~~sp~g~~-lasgs~dg~V~iwd~~~~~~~~~~~~-----------~~~~~--------~~~ 483 (564)
......|+++|++.+ +++-+.++.|++||+.++. ...+ ..+.. .-.
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~---~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~ 804 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGG---SRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQ 804 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCc---EEEEEecccccCcccccccCCCCchhhhhcc
Confidence 113457999999884 4555677999999987641 0000 00100 112
Q ss_pred ceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCC----------CCCCCCCcEEEEEeCCCCEEEEEcCCCeE
Q 043172 484 KVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPP----------ANRNLQYPRCLDFSPGGGFMAVGNAAGKV 553 (564)
Q Consensus 484 ~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~----------~~~~~~~V~~l~fspdg~~Lasgs~dG~V 553 (564)
....++|+++|.++++-+. ++.|++|+..++.+...... .......+..++++++|+.+++-+.+++|
T Consensus 805 ~P~Gvavd~dG~LYVADs~--N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~I 882 (1057)
T PLN02919 805 HPLGVLCAKDGQIYVADSY--NHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLI 882 (1057)
T ss_pred CCceeeEeCCCcEEEEECC--CCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEE
Confidence 3458999999987777666 89999999987765432211 11223467899999999988888899999
Q ss_pred EEEEcCCCC
Q 043172 554 FLYKLNHYH 562 (564)
Q Consensus 554 ~lw~l~~~~ 562 (564)
++|++.+..
T Consensus 883 rvid~~~~~ 891 (1057)
T PLN02919 883 RYLDLNKGE 891 (1057)
T ss_pred EEEECCCCc
Confidence 999997653
No 266
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.25 E-value=1.2e-08 Score=116.04 Aligned_cols=289 Identities=16% Similarity=0.165 Sum_probs=185.0
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCCCcEEEE----EecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEEC
Q 043172 260 SSTGPINSVQFHRNAQLLLVAGLDRRLRFF----QIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDL 335 (564)
Q Consensus 260 ~h~~~V~~l~fspdg~~l~s~s~dg~I~lw----d~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl 335 (564)
...+.|.++.|-++...|+.+..+|.|.++ +..... +..+-.-...|.+++||||+..|+.+..++.+.+..-
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~---~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~ 149 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE---IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTR 149 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce---eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEec
Confidence 355789999999999999999999999999 444332 2233334578999999999999999998888877532
Q ss_pred C----------C---Cc--ee------eecccccc-----------------------CCcceEEEEEcCCCCEEEEEeC
Q 043172 336 V----------K---AK--AD------KIGPLVGR-----------------------EEKSLEFFEVSPDSSVIAFVGN 371 (564)
Q Consensus 336 ~----------~---~~--~~------~~~~~~~~-----------------------~~~~v~~~~~spdg~~la~~~~ 371 (564)
. . |. .. +-.++.|. ....-..++|..||.++|+.+-
T Consensus 150 ~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~ 229 (928)
T PF04762_consen 150 DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSV 229 (928)
T ss_pred cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEE
Confidence 1 0 00 00 00111111 1113456889999999998764
Q ss_pred ------CCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEeC---CCeEEEEECCCCceeEEEee---cCCcce
Q 043172 372 ------EGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGG---DGQVYHWDLRTRTCIHRAVD---EGCING 438 (564)
Q Consensus 372 ------dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~---dg~V~lwD~~~~~~~~~~~~---~~~~~i 438 (564)
...|+||+- .|....+-. ..+--.+++|.|.|++|++... ...|.+|.-+ |-.-..|.. .....+
T Consensus 230 ~~~~~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF~l~~~~~~~~v 307 (928)
T PF04762_consen 230 EPETGSRRVIRVYSR-EGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN-GLRHGEFTLRFDPEEEKV 307 (928)
T ss_pred EcCCCceeEEEEECC-CceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-CcEeeeEecCCCCCCcee
Confidence 257999984 466544443 3445568899999999988765 3467777744 332223332 234578
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEcc-ccccceeEEEEcCCC-cEEEEEecCCCCeEEEEEc---
Q 043172 439 TALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIE-NLTTKVDFMKFNNDA-QILAICSTMKKNSLKLIHI--- 513 (564)
Q Consensus 439 ~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~-~~~~~I~~l~fspdg-~~La~~s~~~d~~I~lwdl--- 513 (564)
..++|++++..||+...+. |.+|-+.+. .+-.-..+. .....+..+.|+|.. ..|.+.+. ++.+..+++
T Consensus 308 ~~l~Wn~ds~iLAv~~~~~-vqLWt~~NY---HWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~--~g~~~~~~~~~~ 381 (928)
T PF04762_consen 308 IELAWNSDSEILAVWLEDR-VQLWTRSNY---HWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTS--NGQYEIYDFAWD 381 (928)
T ss_pred eEEEECCCCCEEEEEecCC-ceEEEeeCC---EEEEEEEEEccCCCCCCceEECCCCCCEEEEEec--CCcEEEEEEEEE
Confidence 9999999999999987664 999988764 111222222 122334558888843 33444444 344443332
Q ss_pred -CCC----------------ce-------eccCCCCC-----CCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q 043172 514 -PSY----------------NV-------FSNWPPAN-----RNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLN 559 (564)
Q Consensus 514 -~s~----------------~~-------~~~~~~~~-----~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~ 559 (564)
..+ .. ..+.|.+. .-...|.+++|++++..+|+-..+|.|.+|.+.
T Consensus 382 v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~ 456 (928)
T PF04762_consen 382 VSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWD 456 (928)
T ss_pred EEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEec
Confidence 111 00 11222221 123679999999999889999999999999854
No 267
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.25 E-value=7.5e-09 Score=119.75 Aligned_cols=242 Identities=12% Similarity=0.094 Sum_probs=160.2
Q ss_pred eEEEEcCC-CCEEEEEeCCCcEEEEEecCCCCceeEEEEe--C------------CcCeEEEEEeeCCCEEEEEe-CCCe
Q 043172 266 NSVQFHRN-AQLLLVAGLDRRLRFFQIDGKRNTKIQSIFL--E------------DCPVRKASFLPDGSQAIIAG-RRKF 329 (564)
Q Consensus 266 ~~l~fspd-g~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~--~------------~~~I~~l~fspdg~~l~s~~-~dg~ 329 (564)
..+++++. +.++++-+..+.|++|+.++. .+..+.. . -.....+++.++++.|+++. .++.
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~---~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~ 647 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN---FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHA 647 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCC---EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCce
Confidence 46888875 566777677889999998653 2222221 0 12357899999888777765 4578
Q ss_pred EEEEECCCCceeeeccc-------ccc------CCcceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEee-----
Q 043172 330 FYSLDLVKAKADKIGPL-------VGR------EEKSLEFFEVSP-DSSVIAFVGNEGYILLVSSKTKELIGTLK----- 390 (564)
Q Consensus 330 i~iwdl~~~~~~~~~~~-------~~~------~~~~v~~~~~sp-dg~~la~~~~dg~I~lwd~~t~~~~~~~~----- 390 (564)
|+++|+.++.+..+... .+. .-.....++|+| ++.++++.+.++.|++|+..++.......
T Consensus 648 Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 648 LREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 99999988765432110 000 011346799999 45556666678999999988765432110
Q ss_pred ----------ecCcEEEEEEecCCCEEEEE-eCCCeEEEEECCCCceeEEEee-------------c-C------CcceE
Q 043172 391 ----------MNGTVRSLAFADDGKQLLSS-GGDGQVYHWDLRTRTCIHRAVD-------------E-G------CINGT 439 (564)
Q Consensus 391 ----------~~~~V~~l~~spdg~~l~s~-s~dg~V~lwD~~~~~~~~~~~~-------------~-~------~~~i~ 439 (564)
.-.....++|+|++..|+++ +.++.|++||+.++........ . + .....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 01235679999999855544 5578999999987653211100 0 0 01235
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEcc--------------ccccceeEEEEcCCCcEEEEEecCCC
Q 043172 440 ALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIE--------------NLTTKVDFMKFNNDAQILAICSTMKK 505 (564)
Q Consensus 440 ~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~--------------~~~~~I~~l~fspdg~~La~~s~~~d 505 (564)
.++++++|..+++-+.++.|++||..+. .. .++. ..-.....|+++++|+++++-+. +
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg-----~v-~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~--N 879 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATK-----RV-TTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTN--N 879 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCC-----eE-EEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECC--C
Confidence 7899999998888899999999998764 22 2221 11235678999999997776666 8
Q ss_pred CeEEEEEcCCCce
Q 043172 506 NSLKLIHIPSYNV 518 (564)
Q Consensus 506 ~~I~lwdl~s~~~ 518 (564)
+.|++|++.++..
T Consensus 880 n~Irvid~~~~~~ 892 (1057)
T PLN02919 880 SLIRYLDLNKGEA 892 (1057)
T ss_pred CEEEEEECCCCcc
Confidence 9999999988754
No 268
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.24 E-value=4e-10 Score=121.77 Aligned_cols=275 Identities=12% Similarity=0.081 Sum_probs=182.3
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCc----eeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECC
Q 043172 261 STGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNT----KIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLV 336 (564)
Q Consensus 261 h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~----~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~ 336 (564)
|-++++++++-. .+|+.| ..-.|.+|+++..... ....+..|. +... ..-.+.+++++..-+.++.-...
T Consensus 6 ~~~~l~~~~~~~--~~llag-~gp~i~~yd~~s~~li~~~~~~~~~~~H~--~e~~-~~l~~~~~v~~~~~~~v~~~~~~ 79 (967)
T KOG0974|consen 6 SLGPLNLPQLVS--DYLLAG-SGPEILVYDLSSGCLIRHLIQSKILEVHR--GEGK-VKLLSGKIVTCAKSDEVYVKEAS 79 (967)
T ss_pred ccccccchhhcc--ceeeec-CCCceEEeeCCchhHhhhhhhhccccccc--cccc-ceeccceEEEEEeecceeecchh
Confidence 456677776655 556554 3456999998754210 111112220 0000 00123455555544444433322
Q ss_pred CCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeeecCcE-----EEEEEecCCCEEEEEe
Q 043172 337 KAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLKMNGTV-----RSLAFADDGKQLLSSG 411 (564)
Q Consensus 337 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~~~~~V-----~~l~~spdg~~l~s~s 411 (564)
..... .+.. .+....+.-....+++++.+..+.+||...+.....+.+...+ .-+.++++.-++++|+
T Consensus 80 ~~~~~---~~s~----wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gs 152 (967)
T KOG0974|consen 80 NQIIE---RFSD----WIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGS 152 (967)
T ss_pred hhhhh---hccc----cccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEecc
Confidence 22111 1111 2333455556778899999999999999888777666654432 2233455667899999
Q ss_pred CCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEc
Q 043172 412 GDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFN 491 (564)
Q Consensus 412 ~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fs 491 (564)
.-+.|.+|+....+....+.. |...|.++.++-+|+++++.|+|.++++|++.+. ..+..+.-+|...|+.+.|.
T Consensus 153 v~~~iivW~~~~dn~p~~l~G-HeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~----~~~~~~~fgHsaRvw~~~~~ 227 (967)
T KOG0974|consen 153 VFGEIIVWKPHEDNKPIRLKG-HEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSR----EVLGCTGFGHSARVWACCFL 227 (967)
T ss_pred ccccEEEEeccccCCcceecc-cCCceEEEEEccCCcEEEEEecCcceeeeecccc----cccCcccccccceeEEEEec
Confidence 999999999984433333443 3446899999999999999999999999999986 12223667899999999999
Q ss_pred CCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCC
Q 043172 492 NDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNH 560 (564)
Q Consensus 492 pdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~ 560 (564)
|+ .+++++. |.+.++|... ++.+..+..+. ...|+.++..++...+++++.||.+++|++..
T Consensus 228 ~n--~i~t~ge--dctcrvW~~~-~~~l~~y~~h~--g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 228 PN--RIITVGE--DCTCRVWGVN-GTQLEVYDEHS--GKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred cc--eeEEecc--ceEEEEEecc-cceehhhhhhh--hcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 99 8999998 9999999654 33333333222 24689999999999999999999999999864
No 269
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.24 E-value=8.3e-11 Score=132.42 Aligned_cols=224 Identities=12% Similarity=0.169 Sum_probs=167.3
Q ss_pred CCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 043172 305 EDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKE 384 (564)
Q Consensus 305 ~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~ 384 (564)
+-..|.++.=+|...+.++|+.||.+++|....++........|. ..|+.+.|+.+|+.+..+..||.+.+|.+. .+
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~--s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk 2283 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN--SRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PK 2283 (2439)
T ss_pred ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc--chhhhhhhcccCCceeeeccCCceeecccC-Cc
Confidence 445677787788888999999999999999988887666555565 468999999999999999999999999987 44
Q ss_pred EEEEee-ecCcEEEEEEecCCCEEEEEeC---CCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEE
Q 043172 385 LIGTLK-MNGTVRSLAFADDGKQLLSSGG---DGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVN 460 (564)
Q Consensus 385 ~~~~~~-~~~~V~~l~~spdg~~l~s~s~---dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~ 460 (564)
+....+ |+....++.|-. ..+++++. ++.+.+||.-.......+...|..+.+++++-|..+.|++|+.+|.|+
T Consensus 2284 ~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~ 2361 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVC 2361 (2439)
T ss_pred ceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEE
Confidence 444444 888899999975 66777654 689999997643322222244555779999999999999999999999
Q ss_pred EEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCc----EEEE
Q 043172 461 VYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYP----RCLD 536 (564)
Q Consensus 461 iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V----~~l~ 536 (564)
+||++.. +.++++.. +. ...++++++. .|.++||++.....+..+|....+.+.. ..+-
T Consensus 2362 l~D~rqr-----ql~h~~~~---------~~-~~~~f~~~ss--~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~g~Q~~ 2424 (2439)
T KOG1064|consen 2362 LFDIRQR-----QLRHTFQA---------LD-TREYFVTGSS--EGNIKIWRLSEFGLLHTFPSEHAKQGFFRNIGMQIN 2424 (2439)
T ss_pred EeehHHH-----HHHHHhhh---------hh-hhheeeccCc--ccceEEEEccccchhhcCchhhcccchhhhcCceee
Confidence 9999875 66666553 33 4567888888 8999999999888887777654443321 1122
Q ss_pred EeCCCCEEEEEcCCC
Q 043172 537 FSPGGGFMAVGNAAG 551 (564)
Q Consensus 537 fspdg~~Lasgs~dG 551 (564)
..+ +..|.+++.||
T Consensus 2425 v~~-~nrifsCgad~ 2438 (2439)
T KOG1064|consen 2425 VGQ-CNRIFSCGADG 2438 (2439)
T ss_pred ecc-CceEEEecCCC
Confidence 222 34456666665
No 270
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.24 E-value=5.7e-08 Score=94.76 Aligned_cols=222 Identities=19% Similarity=0.242 Sum_probs=151.6
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEe-eCCCEEEEEeCCCeEEEEECCCCceeeec
Q 043172 267 SVQFHR-NAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFL-PDGSQAIIAGRRKFFYSLDLVKAKADKIG 344 (564)
Q Consensus 267 ~l~fsp-dg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fs-pdg~~l~s~~~dg~i~iwdl~~~~~~~~~ 344 (564)
+++|.+ ++.++++--..+.|..|+..+. ....+.... ...+++. ++ ..|+++...+ +.++|+.+++...+.
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~---~~~~~~~~~--~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTG---EVEVIDLPG--PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLA 76 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTT---EEEEEESSS--EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCC---eEEEEecCC--CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEe
Confidence 678998 6777777767888999987654 222233322 6677787 55 5666666554 566699999876665
Q ss_pred ccc-cc-CCcceEEEEEcCCCCEEEEEeCC--------CeEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEE-EeCC
Q 043172 345 PLV-GR-EEKSLEFFEVSPDSSVIAFVGNE--------GYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLS-SGGD 413 (564)
Q Consensus 345 ~~~-~~-~~~~v~~~~~spdg~~la~~~~d--------g~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s-~s~d 413 (564)
... +. .....+.+++.|+|++.++.... |.|..++.. ++.......-...+.|+|+|+++.|++ -+..
T Consensus 77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~ 155 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFN 155 (246)
T ss_dssp EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTT
T ss_pred eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeeccccc
Confidence 553 22 33568899999999977765543 668888887 665555555667899999999997764 4667
Q ss_pred CeEEEEECCCCce----eEEEee-cCC-cceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeE
Q 043172 414 GQVYHWDLRTRTC----IHRAVD-EGC-INGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDF 487 (564)
Q Consensus 414 g~V~lwD~~~~~~----~~~~~~-~~~-~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~ 487 (564)
+.|+.|++..... ...+.. ... ...-.+++..+|++.++....+.|.+++.. + +.+..+......+++
T Consensus 156 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G-----~~~~~i~~p~~~~t~ 229 (246)
T PF08450_consen 156 GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-G-----KLLREIELPVPRPTN 229 (246)
T ss_dssp TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-S-----CEEEEEE-SSSSEEE
T ss_pred ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-c-----cEEEEEcCCCCCEEE
Confidence 8899999864322 122222 222 135789999999988888889999999988 4 677766655568999
Q ss_pred EEEc-CCCcEEEEEec
Q 043172 488 MKFN-NDAQILAICST 502 (564)
Q Consensus 488 l~fs-pdg~~La~~s~ 502 (564)
++|. ++...|++.+.
T Consensus 230 ~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 230 CAFGGPDGKTLYVTTA 245 (246)
T ss_dssp EEEESTTSSEEEEEEB
T ss_pred EEEECCCCCEEEEEeC
Confidence 9994 67677776653
No 271
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.24 E-value=7.8e-10 Score=113.11 Aligned_cols=187 Identities=15% Similarity=0.171 Sum_probs=151.5
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEEEee----ecCcEEEEEEe------c--------------CCCEEEEEeCCCeE
Q 043172 361 PDSSVIAFVGNEGYILLVSSKTKELIGTLK----MNGTVRSLAFA------D--------------DGKQLLSSGGDGQV 416 (564)
Q Consensus 361 pdg~~la~~~~dg~I~lwd~~t~~~~~~~~----~~~~V~~l~~s------p--------------dg~~l~s~s~dg~V 416 (564)
|...++|....+|.+++|+...++....+. ..+..++..|. | +-..++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 456789999999999999999998877776 34555565553 1 22467777888999
Q ss_pred EEEECCCCceeEEEe-ecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCc
Q 043172 417 YHWDLRTRTCIHRAV-DEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQ 495 (564)
Q Consensus 417 ~lwD~~~~~~~~~~~-~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~ 495 (564)
.+|++..++...++. +.+..++.++.++.+-..|.+++.|+.+..|+.... ..++.+......+.+++.+|||.
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~-----~~~~~~~~~~~~~~sl~is~D~~ 157 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK-----VIIRIWKEQKPLVSSLCISPDGK 157 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc-----eeeeeeccCCCccceEEEcCCCC
Confidence 999999999888887 456667888888888889999999999999999987 77788888888999999999999
Q ss_pred EEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCC-----CCEEEEE-cCCCeEEEEEcC
Q 043172 496 ILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPG-----GGFMAVG-NAAGKVFLYKLN 559 (564)
Q Consensus 496 ~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspd-----g~~Lasg-s~dG~V~lw~l~ 559 (564)
.|++|+. .|++|++.+.+++..|+. |.++|++++|.-+ |.|+.++ ....-+.+|-+.
T Consensus 158 ~l~~as~----~ik~~~~~~kevv~~ftg---h~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 158 ILLTASR----QIKVLDIETKEVVITFTG---HGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred EEEeccc----eEEEEEccCceEEEEecC---CCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence 9999985 899999999999987654 5588999999877 6666544 344457777654
No 272
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.21 E-value=2e-08 Score=114.25 Aligned_cols=284 Identities=15% Similarity=0.170 Sum_probs=180.2
Q ss_pred CCeeEEEEcCCCCEEEEEeC--CC--cEEEEEecCCC-CceeEEEE-----eCCcCeEEEEEeeCCCEEEEEeCCCeEEE
Q 043172 263 GPINSVQFHRNAQLLLVAGL--DR--RLRFFQIDGKR-NTKIQSIF-----LEDCPVRKASFLPDGSQAIIAGRRKFFYS 332 (564)
Q Consensus 263 ~~V~~l~fspdg~~l~s~s~--dg--~I~lwd~~~~~-~~~~~~~~-----~~~~~I~~l~fspdg~~l~s~~~dg~i~i 332 (564)
..+...+|.+....++++.. .. .|.+....... ...+.++. .....|.++.|.++...++.+..+|.|.+
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~ 101 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIIL 101 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEE
Confidence 46777888876554433322 22 23333332211 12333332 23467999999999999999999999999
Q ss_pred E----ECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE---------------------
Q 043172 333 L----DLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIG--------------------- 387 (564)
Q Consensus 333 w----dl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~--------------------- 387 (564)
+ +..+.....+ |.-...|.+++||||+.+|+.++.++.|.+.+- +..++.
T Consensus 102 ~~~~~~~~~~~~E~V----G~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~-~fd~i~E~~l~~~~~~~~~~VsVGWGk 176 (928)
T PF04762_consen 102 VREDPDPDEDEIEIV----GSVDSGILAASWSPDEELLALVTGEGNLLLMTR-DFDPISEVPLDSDDFGESKHVSVGWGK 176 (928)
T ss_pred EEccCCCCCceeEEE----EEEcCcEEEEEECCCcCEEEEEeCCCEEEEEec-cceEEEEeecCccccCCCceeeeccCc
Confidence 9 6666655443 333347999999999999999999998888752 111110
Q ss_pred ---Eee-------------------------ecCcEEEEEEecCCCEEEEEeC---C---CeEEEEECCCCceeEEEeec
Q 043172 388 ---TLK-------------------------MNGTVRSLAFADDGKQLLSSGG---D---GQVYHWDLRTRTCIHRAVDE 433 (564)
Q Consensus 388 ---~~~-------------------------~~~~V~~l~~spdg~~l~s~s~---d---g~V~lwD~~~~~~~~~~~~~ 433 (564)
+|. ....-..|+|-.||.++++.+. . ..|++|+-. |........-
T Consensus 177 KeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v 255 (928)
T PF04762_consen 177 KETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPV 255 (928)
T ss_pred ccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccC
Confidence 110 1123457889999999998874 2 579999965 5543333222
Q ss_pred CCcceEEEEECCCCCEEEEEeC---CCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEE
Q 043172 434 GCINGTALCTSPDGTFFAAGSD---SGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKL 510 (564)
Q Consensus 434 ~~~~i~~l~~sp~g~~lasgs~---dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~l 510 (564)
.+ --.+++|.|.|++||+... ...|.+|..+.. ....-.-.+......|..|.|++|+.+||+... ..|.|
T Consensus 256 ~g-Le~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGL--rhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~---~~vqL 329 (928)
T PF04762_consen 256 DG-LEGALSWRPSGNLIASSQRLPDRHDVVFFERNGL--RHGEFTLRFDPEEEKVIELAWNSDSEILAVWLE---DRVQL 329 (928)
T ss_pred CC-ccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCc--EeeeEecCCCCCCceeeEEEECCCCCEEEEEec---CCceE
Confidence 22 1257899999999998754 346777776543 111111112245678899999999999999775 44999
Q ss_pred EEcCCCceeccCCCCCCCCCCcEEEEEeCCC-CEEEEEcCCCeEEEEEc
Q 043172 511 IHIPSYNVFSNWPPANRNLQYPRCLDFSPGG-GFMAVGNAAGKVFLYKL 558 (564)
Q Consensus 511 wdl~s~~~~~~~~~~~~~~~~V~~l~fspdg-~~Lasgs~dG~V~lw~l 558 (564)
|...+..-+......-.....+..+.|+|.. ..|.+++.+|.+..+++
T Consensus 330 Wt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 330 WTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDF 378 (928)
T ss_pred EEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEE
Confidence 9998876443211111112334559999954 45777777677766554
No 273
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.19 E-value=1.2e-08 Score=107.11 Aligned_cols=305 Identities=14% Similarity=0.148 Sum_probs=198.3
Q ss_pred eeeeeeeecccCCCCCCCCeeEEEEcCC------------CCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEE
Q 043172 246 LLEYSRLIDANADESSTGPINSVQFHRN------------AQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKAS 313 (564)
Q Consensus 246 ~~d~~rl~~~~~~~~h~~~V~~l~fspd------------g~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~ 313 (564)
++|...+.-+.....|...|+.|.|.|- ..+||++...|.|.|||+.. ...+..+..+..++..++
T Consensus 39 VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~--~s~~~~l~~~~~~~qdl~ 116 (1062)
T KOG1912|consen 39 VVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVL--ASVINWLSHSNDSVQDLC 116 (1062)
T ss_pred EEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehh--hhhhhhhcCCCcchhhee
Confidence 4454555555666779999999999872 12577777889999999874 335556777888999999
Q ss_pred Eee---CC-CEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEE------------------------------
Q 043172 314 FLP---DG-SQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEV------------------------------ 359 (564)
Q Consensus 314 fsp---dg-~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~------------------------------ 359 (564)
|-+ +. ..|++.....++.+|+..+|+..-.. -+++. ...|+.+
T Consensus 117 W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~-~ys~~--iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~ 193 (1062)
T KOG1912|consen 117 WVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKY-DYSHE--ILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDV 193 (1062)
T ss_pred eeeccCcchheeEEecCCcEEEEEEccCCceeecc-ccCCc--ceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCC
Confidence 986 33 45666677789999998888642110 01111 2223333
Q ss_pred ---------------------------------------------cCCCCEEEEEeCCCeEEEEECCCCcEEEEee-ecC
Q 043172 360 ---------------------------------------------SPDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNG 393 (564)
Q Consensus 360 ---------------------------------------------spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~ 393 (564)
+|.-+.+++......+.++|++-.+++.... ..+
T Consensus 194 pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~ 273 (1062)
T KOG1912|consen 194 PGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERG 273 (1062)
T ss_pred CceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccC
Confidence 3333333333334445555555555555544 334
Q ss_pred cEEEEEEecCC--CEEEEEeCCCeEEEEECCC----------------CceeEEEe------------------------
Q 043172 394 TVRSLAFADDG--KQLLSSGGDGQVYHWDLRT----------------RTCIHRAV------------------------ 431 (564)
Q Consensus 394 ~V~~l~~spdg--~~l~s~s~dg~V~lwD~~~----------------~~~~~~~~------------------------ 431 (564)
.+.-+.|-|++ ..|++.-.||.+.+|-.+. +.+++.+.
T Consensus 274 ~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~ 353 (1062)
T KOG1912|consen 274 GAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLY 353 (1062)
T ss_pred CcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhh
Confidence 45566777765 4688888899998886543 11111110
Q ss_pred --------------------------------------------------ecCCcceEEEEEC-----------CCC---
Q 043172 432 --------------------------------------------------DEGCINGTALCTS-----------PDG--- 447 (564)
Q Consensus 432 --------------------------------------------------~~~~~~i~~l~~s-----------p~g--- 447 (564)
..+..+.++.... |.+
T Consensus 354 s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~ 433 (1062)
T KOG1912|consen 354 SSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTP 433 (1062)
T ss_pred hcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCcc
Confidence 0011111122111 122
Q ss_pred ----CEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCC-------CCeEEEEEcCCC
Q 043172 448 ----TFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMK-------KNSLKLIHIPSY 516 (564)
Q Consensus 448 ----~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~-------d~~I~lwdl~s~ 516 (564)
.++|+|++.|+|.|+|+.++ ...+.+..|+..|.++.|.....++-.+.... .+.+.+-++++|
T Consensus 434 ~~~~pLvAvGT~sGTV~vvdvst~-----~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtG 508 (1062)
T KOG1912|consen 434 AGTVPLVAVGTNSGTVDVVDVSTN-----AVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTG 508 (1062)
T ss_pred ceeeeeEEeecCCceEEEEEecch-----hhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccc
Confidence 26889999999999999987 67778888999999999988877765443321 256788899998
Q ss_pred ceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCC
Q 043172 517 NVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNH 560 (564)
Q Consensus 517 ~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~ 560 (564)
....--........+|+.+..|..|+||+..-.+--+-||++++
T Consensus 509 lsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt 552 (1062)
T KOG1912|consen 509 LSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKT 552 (1062)
T ss_pred cccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhcc
Confidence 65442222334457899999999999999999999999999864
No 274
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.19 E-value=3.4e-08 Score=93.36 Aligned_cols=243 Identities=16% Similarity=0.166 Sum_probs=144.4
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCc---CeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeee
Q 043172 267 SVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDC---PVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKI 343 (564)
Q Consensus 267 ~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~---~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~ 343 (564)
.++.+++|++||.- .|..|-|=.....-...+...+.+.. .=+.++||||+..||.+...|+|+++|+.......+
T Consensus 2 ~~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I 80 (282)
T PF15492_consen 2 HLALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVI 80 (282)
T ss_pred ceeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEc
Confidence 36778899988876 46667665443322223333332222 346799999999999999999999999987654333
Q ss_pred cc---ccccCCcceEEEEEcCC------CCEEEEEeCCCeEEEEECCC-----CcEEEEee----ecCcEEEEEEecCCC
Q 043172 344 GP---LVGREEKSLEFFEVSPD------SSVIAFVGNEGYILLVSSKT-----KELIGTLK----MNGTVRSLAFADDGK 405 (564)
Q Consensus 344 ~~---~~~~~~~~v~~~~~spd------g~~la~~~~dg~I~lwd~~t-----~~~~~~~~----~~~~V~~l~~spdg~ 405 (564)
.. ..+.-...|..+.|.+. ...|++....|.++-|-+.. .+...++. +...|.++.|+|..+
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~ 160 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR 160 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence 22 11222245666766542 22455666777777666432 23334443 367899999999999
Q ss_pred EEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCE-E-EEEeCCCc------EEEEeCCcccCCcceeeEE
Q 043172 406 QLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTF-F-AAGSDSGI------VNVYNRQEFLGGKRKPIKT 477 (564)
Q Consensus 406 ~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~-l-asgs~dg~------V~iwd~~~~~~~~~~~~~~ 477 (564)
+|++||.... ..+. .+ ....++++-.+-.+..+ . ++...++. ..+|.+-+. +....
T Consensus 161 LLlVgG~~~~------~~~~--s~---a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~-----~~fs~ 224 (282)
T PF15492_consen 161 LLLVGGCEQN------QDGM--SK---ASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSF-----KFFSR 224 (282)
T ss_pred EEEEeccCCC------CCcc--cc---ccccCceEEEEcCCCCcEEEccccCccccccccccceeeccce-----eeeec
Confidence 9888875322 0000 00 01112222222111111 1 11222211 123332221 12122
Q ss_pred ccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCC
Q 043172 478 IENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRN 528 (564)
Q Consensus 478 ~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~ 528 (564)
.......|..|..||||++||+... .|.|.||++++......|+....+
T Consensus 225 ~~~~~d~i~kmSlSPdg~~La~ih~--sG~lsLW~iPsL~~~~~W~~~eqP 273 (282)
T PF15492_consen 225 QGQEQDGIFKMSLSPDGSLLACIHF--SGSLSLWEIPSLRLQRSWKQDEQP 273 (282)
T ss_pred cccCCCceEEEEECCCCCEEEEEEc--CCeEEEEecCcchhhcccchhhCC
Confidence 2334678999999999999999999 999999999999999888766443
No 275
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.17 E-value=5.2e-09 Score=97.25 Aligned_cols=238 Identities=11% Similarity=0.016 Sum_probs=150.5
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCc
Q 043172 317 DGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSP-DSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGT 394 (564)
Q Consensus 317 dg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~ 394 (564)
...+|+.||..|.+.+|...+.+... .....+.. .|+-+.=.. ...-+..++.|.+++++++.-+.....+. .+-.
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~-~~cd~snn-~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~ 160 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHL-YQCDVSNN-DVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLT 160 (344)
T ss_pred cccEEEeccccceeeeecccCcccce-eeeccccc-chhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccc
Confidence 34588999999999999998765421 11111111 111110001 12235566778888877775443322222 1234
Q ss_pred EEEEEEecCCCEEEEEeCCCeEEEEECCCC-ce-eEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcc
Q 043172 395 VRSLAFADDGKQLLSSGGDGQVYHWDLRTR-TC-IHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKR 472 (564)
Q Consensus 395 V~~l~~spdg~~l~s~s~dg~V~lwD~~~~-~~-~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~ 472 (564)
+.+++++++++++++.+....|.+|.+... .. +............+..|+.....+|++++||++.|||++.......
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~ 240 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMA 240 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchh
Confidence 889999999999999999999999988653 22 2223333333456788999999999999999999999997622111
Q ss_pred eeeEEccccccceeEEEEcCCCc--EEEEEecCCCCeEEEEEcCCCceeccCCCCC----CC-CCCcEEEEEeCCCCEEE
Q 043172 473 KPIKTIENLTTKVDFMKFNNDAQ--ILAICSTMKKNSLKLIHIPSYNVFSNWPPAN----RN-LQYPRCLDFSPGGGFMA 545 (564)
Q Consensus 473 ~~~~~~~~~~~~I~~l~fspdg~--~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~----~~-~~~V~~l~fspdg~~La 545 (564)
....+-..|.+.+..+.|++.|. +|+..-. -+.+.+.|++++...+.+.... .| ...|..-.|+.++.-+.
T Consensus 241 ~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEh--fs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~ 318 (344)
T KOG4532|consen 241 EISSTRPHHNGAFRVCRFSLYGLLDLLFISEH--FSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESND 318 (344)
T ss_pred hhcccCCCCCCceEEEEecCCCcceEEEEecC--cceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccc
Confidence 22223346889999999998663 4444444 6889999999875443322211 12 23477778888877776
Q ss_pred EEcCCCeEEEEEcC
Q 043172 546 VGNAAGKVFLYKLN 559 (564)
Q Consensus 546 sgs~dG~V~lw~l~ 559 (564)
+.+.+. +.=|++.
T Consensus 319 v~~e~~-~ae~ni~ 331 (344)
T KOG4532|consen 319 VKNELQ-GAEYNIL 331 (344)
T ss_pred cccchh-hheeecc
Confidence 666542 4445543
No 276
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.17 E-value=1.3e-09 Score=104.45 Aligned_cols=251 Identities=13% Similarity=0.104 Sum_probs=182.7
Q ss_pred ceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEE-CCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeE
Q 043172 297 TKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLD-LVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYI 375 (564)
Q Consensus 297 ~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwd-l~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I 375 (564)
..+..+.++...|+....-|...-+++.+.|.+++||- .+.++. ...+......+++++.+.+....|+++-..|++
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~--wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtv 92 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQY--WPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTV 92 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEecccccc--CchhhhhCCCCceEeeeeccceEEEEEEecceE
Confidence 35566778888888888888888899999999999995 334443 223333344578999999999999999999999
Q ss_pred EEEECC----CCcEEEEe-eecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEE
Q 043172 376 LLVSSK----TKELIGTL-KMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFF 450 (564)
Q Consensus 376 ~lwd~~----t~~~~~~~-~~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l 450 (564)
.-+.+. ....++.. .|...+..+-|+-....+++.+.|..+.---.+.+..+..+..... .+.+.+.-. +.
T Consensus 93 tefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~--~t~~~~d~~--~~ 168 (404)
T KOG1409|consen 93 TEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETP--ASALQFDAL--YA 168 (404)
T ss_pred EEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeecc--CCCCceeeE--EE
Confidence 988764 23333333 3889999999998888999999987665444444444433222111 011111111 55
Q ss_pred EEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCC
Q 043172 451 AAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQ 530 (564)
Q Consensus 451 asgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~ 530 (564)
..|...|.|.+-.+.. ....++.++.+|...+++++|.|..++|++|+. |..+.+||+.-.+-.. -...+|..
T Consensus 169 fvGd~~gqvt~lr~~~---~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~--d~~vi~wdigg~~g~~--~el~gh~~ 241 (404)
T KOG1409|consen 169 FVGDHSGQITMLKLEQ---NGCQLITTFNGHTGEVTCLKWDPGQRLLFSGAS--DHSVIMWDIGGRKGTA--YELQGHND 241 (404)
T ss_pred EecccccceEEEEEee---cCCceEEEEcCcccceEEEEEcCCCcEEEeccc--cCceEEEeccCCccee--eeeccchh
Confidence 6677777776655543 334789999999999999999999999999998 9999999997554333 12345667
Q ss_pred CcEEEEEeCCCCEEEEEcCCCeEEEEEcCC
Q 043172 531 YPRCLDFSPGGGFMAVGNAAGKVFLYKLNH 560 (564)
Q Consensus 531 ~V~~l~fspdg~~Lasgs~dG~V~lw~l~~ 560 (564)
.|..++..+--+.|++++.||.|-+|+++.
T Consensus 242 kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 242 KVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred hhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 888888888888999999999999999874
No 277
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.17 E-value=3e-09 Score=100.05 Aligned_cols=250 Identities=12% Similarity=0.082 Sum_probs=167.5
Q ss_pred CCCeeEEEEcC---CCC-EEEEEeCCCcEEEEEecCCCCc-eeEEEEeCC---cCeEEEEEeeCCCEEEEEeCCCeEEEE
Q 043172 262 TGPINSVQFHR---NAQ-LLLVAGLDRRLRFFQIDGKRNT-KIQSIFLED---CPVRKASFLPDGSQAIIAGRRKFFYSL 333 (564)
Q Consensus 262 ~~~V~~l~fsp---dg~-~l~s~s~dg~I~lwd~~~~~~~-~~~~~~~~~---~~I~~l~fspdg~~l~s~~~dg~i~iw 333 (564)
++.+..+.|.. +|. .|+-+-..|.|.+|..+..... .+..+.... ....++.|++.+..++++-.+|.+.+-
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v 148 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV 148 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence 35567777764 444 5666777899999987632111 111111111 124577899999999999899999977
Q ss_pred ECCCCceeeeccccccCCcceEEEEEcC-CCCEEEEEeCCCeEEEEECC-CCcEEEE--eeecCcEEEEEEec-CCCEEE
Q 043172 334 DLVKAKADKIGPLVGREEKSLEFFEVSP-DSSVIAFVGNEGYILLVSSK-TKELIGT--LKMNGTVRSLAFAD-DGKQLL 408 (564)
Q Consensus 334 dl~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~la~~~~dg~I~lwd~~-t~~~~~~--~~~~~~V~~l~~sp-dg~~l~ 408 (564)
+.......++.....|.- .++...|+. +.+++++||.|+.+..||++ .++++.. ..|...|.+|.-+| .+.+|+
T Consensus 149 ~~t~~~le~vq~wk~He~-E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~ 227 (339)
T KOG0280|consen 149 YETEMVLEKVQTWKVHEF-EAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIA 227 (339)
T ss_pred ecceeeeeecccccccce-eeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEE
Confidence 777777666666777665 677788875 45788999999999999999 4555544 23888999998887 678999
Q ss_pred EEeCCCeEEEEECCC-CceeEEEeecCCcceEEEEECCCCC--EEEEEeCCCcEEEEeCCcccCCcceeeEEccccccce
Q 043172 409 SSGGDGQVYHWDLRT-RTCIHRAVDEGCINGTALCTSPDGT--FFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKV 485 (564)
Q Consensus 409 s~s~dg~V~lwD~~~-~~~~~~~~~~~~~~i~~l~~sp~g~--~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I 485 (564)
+|+.|-.|++||.++ ++++..-... .+|..++.+|.-. .|+++-.+| .+|-+...........+.....|.+-+
T Consensus 228 TGsYDe~i~~~DtRnm~kPl~~~~v~--GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~ 304 (339)
T KOG0280|consen 228 TGSYDECIRVLDTRNMGKPLFKAKVG--GGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLC 304 (339)
T ss_pred EeccccceeeeehhcccCccccCccc--cceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeecccccccee
Confidence 999999999999995 5666544333 4678999998633 344443343 456666554222222444455666666
Q ss_pred eEEEEcCCCcEEEEEecCCCCeEE-EEEcCCC
Q 043172 486 DFMKFNNDAQILAICSTMKKNSLK-LIHIPSY 516 (564)
Q Consensus 486 ~~l~fspdg~~La~~s~~~d~~I~-lwdl~s~ 516 (564)
..-.|.....+||+++.. |+.++ +|-.-++
T Consensus 305 YG~DWd~~~~~lATCsFY-Dk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 305 YGGDWDSKDSFLATCSFY-DKKIRQLWLHITG 335 (339)
T ss_pred eccccccccceeeeeecc-ccceeeeeeeccC
Confidence 666675555678888765 66655 7755443
No 278
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.17 E-value=1.3e-09 Score=104.44 Aligned_cols=204 Identities=16% Similarity=0.234 Sum_probs=139.8
Q ss_pred CCCeeEEEEcCCCC--EEEEEeCCCcEEEEEecCCCCce-------------eEE---------------------EEeC
Q 043172 262 TGPINSVQFHRNAQ--LLLVAGLDRRLRFFQIDGKRNTK-------------IQS---------------------IFLE 305 (564)
Q Consensus 262 ~~~V~~l~fspdg~--~l~s~s~dg~I~lwd~~~~~~~~-------------~~~---------------------~~~~ 305 (564)
...|..+.|.+++. .++..+.|.+|++|.+......+ +.+ -..|
T Consensus 84 eEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaH 163 (433)
T KOG1354|consen 84 EEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAH 163 (433)
T ss_pred hhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccc
Confidence 45789999998664 56777789999999985321111 000 1246
Q ss_pred CcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCC-ceeeeccccccCC----cceEEEEEcCC-CCEEEEEeCCCeEEEEE
Q 043172 306 DCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKA-KADKIGPLVGREE----KSLEFFEVSPD-SSVIAFVGNEGYILLVS 379 (564)
Q Consensus 306 ~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~-~~~~~~~~~~~~~----~~v~~~~~spd-g~~la~~~~dg~I~lwd 379 (564)
...|.++.++.|+..++++. |=.|.+|++.-. +.-.+..+..+.. ..|++..|+|. .+.++..+..|+|++.|
T Consensus 164 tyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcD 242 (433)
T KOG1354|consen 164 TYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCD 242 (433)
T ss_pred eeEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEee
Confidence 77899999999998888764 667999988642 2112222222211 25778889995 46777788889999999
Q ss_pred CCCCcEEEE----ee-------------ecCcEEEEEEecCCCEEEEEeCCCeEEEEECC-CCceeEEEeecCC------
Q 043172 380 SKTKELIGT----LK-------------MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLR-TRTCIHRAVDEGC------ 435 (564)
Q Consensus 380 ~~t~~~~~~----~~-------------~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~-~~~~~~~~~~~~~------ 435 (564)
++...+... +. .-..|.++.|+++|+++++-.. -+|++||+. ..+++.++..+..
T Consensus 243 mR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc 321 (433)
T KOG1354|consen 243 MRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLC 321 (433)
T ss_pred chhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHH
Confidence 985432111 10 1246889999999999987643 589999994 4555555543211
Q ss_pred --------cceEEEEECCCCCEEEEEeCCCcEEEEeCCcc
Q 043172 436 --------INGTALCTSPDGTFFAAGSDSGIVNVYNRQEF 467 (564)
Q Consensus 436 --------~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~ 467 (564)
..-..++|+.++.++++|+....+++|+...+
T Consensus 322 ~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 322 SLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred HHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 11246789999999999999999999996554
No 279
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.16 E-value=4.4e-08 Score=101.96 Aligned_cols=263 Identities=14% Similarity=0.069 Sum_probs=163.5
Q ss_pred CCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCc
Q 043172 273 NAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEK 352 (564)
Q Consensus 273 dg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~ 352 (564)
.+..+++++.++.|.-+|...+ ..+-............ ..++..+++++.++.++.+|..+|+..-...+.+
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG--~~~W~~~~~~~~~~~p--~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~---- 135 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETG--KRLWRVDLDERLSGGV--GADGGLVFVGTEKGEVIALDAEDGKELWRAKLSS---- 135 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCC--cEeeeecCCCCcccce--EEcCCEEEEEcCCCEEEEEECCCCcEeeeeccCc----
Confidence 3668888888999988887643 3443333322211122 2357788888899999999999998754332222
Q ss_pred ceEE-EEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeeecCcEEE------EEEecCCCEEEEEeCCCeEEEEECCCCc
Q 043172 353 SLEF-FEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLKMNGTVRS------LAFADDGKQLLSSGGDGQVYHWDLRTRT 425 (564)
Q Consensus 353 ~v~~-~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~~~~~V~~------l~~spdg~~l~s~s~dg~V~lwD~~~~~ 425 (564)
.+.+ ..+ .+..+++++.+|.|+.||..+++.+..+........ .... +..++++..+|.++.+|+.+++
T Consensus 136 ~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~ 211 (377)
T TIGR03300 136 EVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQ 211 (377)
T ss_pred eeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCC
Confidence 1111 111 245677778899999999999998877764332211 1122 3467788888999999999998
Q ss_pred eeEEEeecCCc---ce---EEEEECC--CCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEE
Q 043172 426 CIHRAVDEGCI---NG---TALCTSP--DGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQIL 497 (564)
Q Consensus 426 ~~~~~~~~~~~---~i---~~l~~sp--~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~L 497 (564)
.+......... .+ ..+.-+| .+..+++++.+|.+..||..++ +.+..... .....+. ..+..+
T Consensus 212 ~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG-----~~~W~~~~--~~~~~p~--~~~~~v 282 (377)
T TIGR03300 212 PLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSG-----RVLWKRDA--SSYQGPA--VDDNRL 282 (377)
T ss_pred EeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCC-----cEEEeecc--CCccCce--EeCCEE
Confidence 76543321110 00 0010011 3457888888999999999876 55444431 1112222 245677
Q ss_pred EEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCCCC
Q 043172 498 AICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNHYH 562 (564)
Q Consensus 498 a~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~~~ 562 (564)
++++. ++.|..++..+++.+-....... ....+... .+..|++++.+|.|++|+..+++
T Consensus 283 yv~~~--~G~l~~~d~~tG~~~W~~~~~~~--~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~ 341 (377)
T TIGR03300 283 YVTDA--DGVVVALDRRSGSELWKNDELKY--RQLTAPAV--VGGYLVVGDFEGYLHWLSREDGS 341 (377)
T ss_pred EEECC--CCeEEEEECCCCcEEEccccccC--CccccCEE--ECCEEEEEeCCCEEEEEECCCCC
Confidence 77776 89999999999877643322111 11222222 45788899999999999987654
No 280
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.16 E-value=1.3e-09 Score=117.91 Aligned_cols=196 Identities=14% Similarity=0.123 Sum_probs=151.7
Q ss_pred CeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCC---cceEEEEEcCCCCEEEEEeCCCeEEEEECCC-C
Q 043172 308 PVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREE---KSLEFFEVSPDSSVIAFVGNEGYILLVSSKT-K 383 (564)
Q Consensus 308 ~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~---~~v~~~~~spdg~~la~~~~dg~I~lwd~~t-~ 383 (564)
.|....+.-....++.+..+..+.+||...+.... .+..... .++.-+.++++.-++++|+.-+.|.+|.... .
T Consensus 89 wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~--~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn 166 (967)
T KOG0974|consen 89 WIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLS--KIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN 166 (967)
T ss_pred cccccchhhhcceEEEEEcCceEEEEecccCceeh--hcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC
Confidence 34445555667788888889999999998776532 2222221 1223345577778999999999999999863 2
Q ss_pred cEEEEeeecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEe
Q 043172 384 ELIGTLKMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYN 463 (564)
Q Consensus 384 ~~~~~~~~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd 463 (564)
.++....|.+.|.++.|+-+|+++++.|.|.++++|++.+.+.....--.|...+..++|.|+ .+++++.|.+.++|+
T Consensus 167 ~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~ 244 (967)
T KOG0974|consen 167 KPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWG 244 (967)
T ss_pred CcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEe
Confidence 333334499999999999999999999999999999999988776333456778999999998 999999999999997
Q ss_pred CCcccCCcceeeEEccccc-cceeEEEEcCCCcEEEEEecCCCCeEEEEEcCC
Q 043172 464 RQEFLGGKRKPIKTIENLT-TKVDFMKFNNDAQILAICSTMKKNSLKLIHIPS 515 (564)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~-~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s 515 (564)
... ..+..+..|. ..|+.++..++...++++.. |+.+++|++..
T Consensus 245 ~~~------~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~--Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 245 VNG------TQLEVYDEHSGKGIWKIAVPIGVIIKVTGGN--DSTLKLWDLNG 289 (967)
T ss_pred ccc------ceehhhhhhhhcceeEEEEcCCceEEEeecc--Ccchhhhhhhc
Confidence 665 4555666664 57899999988888888887 99999999853
No 281
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.15 E-value=4.4e-08 Score=95.35 Aligned_cols=236 Identities=17% Similarity=0.159 Sum_probs=157.4
Q ss_pred CeEEEEEeeC-CCEEEEEeCCC-eEEEEECCCCceeeeccc-cccCCcceEEEEEcCCCCEEEEEeC-----CCeEEEEE
Q 043172 308 PVRKASFLPD-GSQAIIAGRRK-FFYSLDLVKAKADKIGPL-VGREEKSLEFFEVSPDSSVIAFVGN-----EGYILLVS 379 (564)
Q Consensus 308 ~I~~l~fspd-g~~l~s~~~dg-~i~iwdl~~~~~~~~~~~-~~~~~~~v~~~~~spdg~~la~~~~-----dg~I~lwd 379 (564)
....++.+|. +..++++-+-| .+.+||..+++....... .+++ -.-.-+||++|++|++.-+ .|.|-|||
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRH--FyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd 83 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRH--FYGHGVFSPDGRLLYTTENDYETGRGVIGVYD 83 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCE--EecCEEEcCCCCEEEEeccccCCCcEEEEEEE
Confidence 3467888884 44555555444 678999999987654322 1111 1234789999999998754 48999999
Q ss_pred CC-CCcEEEEee-ecCcEEEEEEecCCCEEEEEeC------------------CCeEEEEECCCCceeEEEee---cCCc
Q 043172 380 SK-TKELIGTLK-MNGTVRSLAFADDGKQLLSSGG------------------DGQVYHWDLRTRTCIHRAVD---EGCI 436 (564)
Q Consensus 380 ~~-t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~------------------dg~V~lwD~~~~~~~~~~~~---~~~~ 436 (564)
.. +.+.+..+. +.-....+.+.|||..|+++.. +-.+.+.|..+++.+.++.. .+..
T Consensus 84 ~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~l 163 (305)
T PF07433_consen 84 AARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQL 163 (305)
T ss_pred CcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccc
Confidence 98 667777776 4446778889999988888742 33567778888888877553 3556
Q ss_pred ceEEEEECCCCCEEEEEeCCC-------cEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEE
Q 043172 437 NGTALCTSPDGTFFAAGSDSG-------IVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLK 509 (564)
Q Consensus 437 ~i~~l~~sp~g~~lasgs~dg-------~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~ 509 (564)
.+..+++.++|..++..-..| .|.+++.........-+-.........|-+|++++++.+++++|-. .+.+.
T Consensus 164 SiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPr-Gg~~~ 242 (305)
T PF07433_consen 164 SIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPR-GGRVA 242 (305)
T ss_pred ceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCC-CCEEE
Confidence 789999999987555443332 3445544431000001111123456789999999999988877764 78999
Q ss_pred EEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeE
Q 043172 510 LIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKV 553 (564)
Q Consensus 510 lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V 553 (564)
+||..++..+...+. ..+..++-.+++ |+++.+ .|.+
T Consensus 243 ~~d~~tg~~~~~~~l-----~D~cGva~~~~~-f~~ssG-~G~~ 279 (305)
T PF07433_consen 243 VWDAATGRLLGSVPL-----PDACGVAPTDDG-FLVSSG-QGQL 279 (305)
T ss_pred EEECCCCCEeecccc-----CceeeeeecCCc-eEEeCC-CccE
Confidence 999999998875544 346677777776 565544 4443
No 282
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.13 E-value=2.4e-08 Score=99.48 Aligned_cols=149 Identities=19% Similarity=0.244 Sum_probs=122.2
Q ss_pred CCCCCCCeeEEEEcCCCCEEEEEeCCC-cEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECC
Q 043172 258 DESSTGPINSVQFHRNAQLLLVAGLDR-RLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLV 336 (564)
Q Consensus 258 ~~~h~~~V~~l~fspdg~~l~s~s~dg-~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~ 336 (564)
.-+|.+.|.-..+..++.-++.|..|| .+-||+.++. .+..+...-+.|.++..+|+|++++++.....+.++|+.
T Consensus 355 qv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~---e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vidid 431 (668)
T COG4946 355 QVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG---EVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDID 431 (668)
T ss_pred EcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCc---eEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEec
Confidence 346888999999999999999999999 8999998865 455566667889999999999999999999999999999
Q ss_pred CCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCC----eEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEEeC
Q 043172 337 KAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEG----YILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSGG 412 (564)
Q Consensus 337 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg----~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s~ 412 (564)
++....+ ......-|..+.|+|++++||.+--+| .|+++|+.+++........+.=.+-+|.|++++|..-+.
T Consensus 432 ngnv~~i---dkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 432 NGNVRLI---DKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred CCCeeEe---cccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEec
Confidence 9987543 223334799999999999999987665 689999999888776655555567788999998876653
No 283
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.12 E-value=3.6e-11 Score=126.87 Aligned_cols=269 Identities=16% Similarity=0.189 Sum_probs=189.5
Q ss_pred eeeeecccCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeC--
Q 043172 249 YSRLIDANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGR-- 326 (564)
Q Consensus 249 ~~rl~~~~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~-- 326 (564)
+.|++.....+.|....+|++|+-+.+.|++|+..|.|++|++..+ ....+...|..+|+.+.-+.+|..+++.+.
T Consensus 1088 FSRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG--~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S 1165 (1516)
T KOG1832|consen 1088 FSRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSG--SMEESVNCHQSAVTLVEPSVDGSTQLTSSSSS 1165 (1516)
T ss_pred HhhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCc--cccccccccccccccccccCCcceeeeecccc
Confidence 4577777778889999999999999999999999999999999854 466678889999999999999988877653
Q ss_pred CCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-----ecCcEEEEEEe
Q 043172 327 RKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-----MNGTVRSLAFA 401 (564)
Q Consensus 327 dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-----~~~~V~~l~~s 401 (564)
.....+|++.. .....+.+. .-.++.|+.....-+.|+......+||+.|+..+.++- .+..-++..|+
T Consensus 1166 ~PlsaLW~~~s-~~~~~Hsf~-----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~Fs 1239 (1516)
T KOG1832|consen 1166 SPLSALWDASS-TGGPRHSFD-----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFS 1239 (1516)
T ss_pred CchHHHhcccc-ccCcccccc-----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccC
Confidence 33577899875 211222222 34578888776666667777789999999998776643 22334788999
Q ss_pred cCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEcccc
Q 043172 402 DDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENL 481 (564)
Q Consensus 402 pdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~ 481 (564)
|+..+++ .|| .+||++..+.++.|..-. .. ..-.|+|+|.-+++.+. |||++++ +.+++....
T Consensus 1240 P~D~LIl---ndG--vLWDvR~~~aIh~FD~ft-~~-~~G~FHP~g~eVIINSE-----IwD~RTF-----~lLh~VP~L 1302 (1516)
T KOG1832|consen 1240 PCDTLIL---NDG--VLWDVRIPEAIHRFDQFT-DY-GGGGFHPSGNEVIINSE-----IWDMRTF-----KLLHSVPSL 1302 (1516)
T ss_pred CCcceEe---eCc--eeeeeccHHHHhhhhhhe-ec-ccccccCCCceEEeech-----hhhhHHH-----HHHhcCccc
Confidence 9988776 355 589999988777765432 11 12358999999888764 8999998 777776644
Q ss_pred ccceeEEEEcCCCcEEEEEecCCC---------------CeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEE
Q 043172 482 TTKVDFMKFNNDAQILAICSTMKK---------------NSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAV 546 (564)
Q Consensus 482 ~~~I~~l~fspdg~~La~~s~~~d---------------~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Las 546 (564)
.. ..|.|+..|..++..-.-.| ...|-++......+.+++.. ..|..++-+|...+|++
T Consensus 1303 dq--c~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~----R~~~Dlct~~~D~~l~v 1376 (1516)
T KOG1832|consen 1303 DQ--CAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVD----RCLLDLCTEPTDSFLGV 1376 (1516)
T ss_pred cc--eEEEeccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeecc----cchhhhhcCCccceEEE
Confidence 32 46889988887764431000 12333444444444444433 34667777887788876
Q ss_pred Ec
Q 043172 547 GN 548 (564)
Q Consensus 547 gs 548 (564)
--
T Consensus 1377 Ie 1378 (1516)
T KOG1832|consen 1377 IE 1378 (1516)
T ss_pred Ee
Confidence 53
No 284
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.11 E-value=1.1e-09 Score=113.46 Aligned_cols=236 Identities=14% Similarity=0.116 Sum_probs=171.1
Q ss_pred CcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCcee-------------eeccccccCCcceEEEEEcCCCCEEEEEeCC
Q 043172 306 DCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKAD-------------KIGPLVGREEKSLEFFEVSPDSSVIAFVGNE 372 (564)
Q Consensus 306 ~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~-------------~~~~~~~~~~~~v~~~~~spdg~~la~~~~d 372 (564)
.....|++|+....+|++||.+|.++|..+.+.... --..+.||.. +|..+.|+.+.+.|-+...+
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~-sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNA-SVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcc-eEEEEEeccccccccccCCC
Confidence 346789999999999999999999999988764321 1123566665 79999999999999999999
Q ss_pred CeEEEEECCCCcEEEEee---ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCE
Q 043172 373 GYILLVSSKTKELIGTLK---MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTF 449 (564)
Q Consensus 373 g~I~lwd~~t~~~~~~~~---~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~ 449 (564)
|.|.+|=+-.+++...+. ..+.|.+++|+.+|..++....||.|.+=.+...+.-.+- . .......+.|+++.+.
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKe-L-kg~~l~hv~ws~D~~~ 170 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKE-L-KGQLLAHVLWSEDLEQ 170 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchh-c-chheccceeecccHHH
Confidence 999999999888876554 4568999999999999999999999988777644332111 1 1123457889999998
Q ss_pred EEEEeCCCcEEEEeCCcccCCcc--ee----eEEccccccceeEEEEc--------CCCcEEEEEecCCCCeEEEEEcCC
Q 043172 450 FAAGSDSGIVNVYNRQEFLGGKR--KP----IKTIENLTTKVDFMKFN--------NDAQILAICSTMKKNSLKLIHIPS 515 (564)
Q Consensus 450 lasgs~dg~V~iwd~~~~~~~~~--~~----~~~~~~~~~~I~~l~fs--------pdg~~La~~s~~~d~~I~lwdl~s 515 (564)
+..+-..|.+.+||......... .+ ...+.+..+.|..+.|. |+...|+++-. +|.+.|..-.+
T Consensus 171 ~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~--nGr~QiMR~eN 248 (1189)
T KOG2041|consen 171 ALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYA--NGRMQIMRSEN 248 (1189)
T ss_pred HHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEc--CceehhhhhcC
Confidence 88888899999999875421100 11 11223334446666664 57888999888 88888875544
Q ss_pred CceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCC
Q 043172 516 YNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAA 550 (564)
Q Consensus 516 ~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~d 550 (564)
......+.+. -.|....|+++|.+||+++.+
T Consensus 249 D~~Pvv~dtg----m~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 249 DPEPVVVDTG----MKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred CCCCeEEecc----cEeecceecCCCcEEEEccCc
Confidence 3322222222 568889999999999998765
No 285
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.11 E-value=2.5e-08 Score=103.87 Aligned_cols=261 Identities=10% Similarity=0.079 Sum_probs=158.7
Q ss_pred CCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCC-
Q 043172 273 NAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREE- 351 (564)
Q Consensus 273 dg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~- 351 (564)
++..+++++.++.+..+|...+ ..+-..... ..+.+.-.. .+..+++++.++.++.||..+|+..-.........
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG--~~~W~~~~~-~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~ 179 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDG--KELWRAKLS-SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALT 179 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCC--cEeeeeccC-ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCcee
Confidence 4667888888999999987643 233333222 222211111 34577778889999999999988643222211100
Q ss_pred -cceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeeecCc--------EEEEEEec--CCCEEEEEeCCCeEEEEE
Q 043172 352 -KSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLKMNGT--------VRSLAFAD--DGKQLLSSGGDGQVYHWD 420 (564)
Q Consensus 352 -~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~~~~~--------V~~l~~sp--dg~~l~s~s~dg~V~lwD 420 (564)
.......+. +..++++..+|.+..+|+.+++.+.......+ +..+.-+| .+..+++++.+|.++.||
T Consensus 180 ~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d 257 (377)
T TIGR03300 180 LRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALD 257 (377)
T ss_pred ecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEE
Confidence 000011111 34677788889999999999987765431110 00111111 355788888899999999
Q ss_pred CCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEcccccc-ceeEEEEcCCCcEEEE
Q 043172 421 LRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTT-KVDFMKFNNDAQILAI 499 (564)
Q Consensus 421 ~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~-~I~~l~fspdg~~La~ 499 (564)
+.+++.+....... ..... ..+..+++++.+|.|..+|..++ +.+........ ...+... .+..|++
T Consensus 258 ~~tG~~~W~~~~~~---~~~p~--~~~~~vyv~~~~G~l~~~d~~tG-----~~~W~~~~~~~~~~ssp~i--~g~~l~~ 325 (377)
T TIGR03300 258 LRSGRVLWKRDASS---YQGPA--VDDNRLYVTDADGVVVALDRRSG-----SELWKNDELKYRQLTAPAV--VGGYLVV 325 (377)
T ss_pred CCCCcEEEeeccCC---ccCce--EeCCEEEEECCCCeEEEEECCCC-----cEEEccccccCCccccCEE--ECCEEEE
Confidence 99998765544211 11222 24567888889999999999876 55544422111 1222222 3567888
Q ss_pred EecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEE
Q 043172 500 CSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYK 557 (564)
Q Consensus 500 ~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~ 557 (564)
++. +|.|++++..+++.+..++.... ....+..+. + +.|++++.||.|+.|.
T Consensus 326 ~~~--~G~l~~~d~~tG~~~~~~~~~~~--~~~~sp~~~-~-~~l~v~~~dG~l~~~~ 377 (377)
T TIGR03300 326 GDF--EGYLHWLSREDGSFVARLKTDGS--GIASPPVVV-G-DGLLVQTRDGDLYAFR 377 (377)
T ss_pred EeC--CCEEEEEECCCCCEEEEEEcCCC--ccccCCEEE-C-CEEEEEeCCceEEEeC
Confidence 887 89999999999998877665431 111222333 3 4588889999998763
No 286
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=2.5e-08 Score=101.15 Aligned_cols=240 Identities=13% Similarity=0.158 Sum_probs=150.0
Q ss_pred CCCCeeEEEEcCCCCEEEEEeC-----------CCcEEEEEecCCCCceeEEEEe--CCcCeE-EEEEeeCCCEEEEEeC
Q 043172 261 STGPINSVQFHRNAQLLLVAGL-----------DRRLRFFQIDGKRNTKIQSIFL--EDCPVR-KASFLPDGSQAIIAGR 326 (564)
Q Consensus 261 h~~~V~~l~fspdg~~l~s~s~-----------dg~I~lwd~~~~~~~~~~~~~~--~~~~I~-~l~fspdg~~l~s~~~ 326 (564)
|. .|.-+.|||+.+||+|-+. ...+.|||+.++. ...++.. ....+. -..||.|++++|--..
T Consensus 249 Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~--lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~ 325 (698)
T KOG2314|consen 249 HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGL--LKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG 325 (698)
T ss_pred CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccc--hhcceeccCCCccccceEEeccCCceeEEecc
Confidence 53 5999999999999999764 2579999998553 4444443 222222 3579999999987665
Q ss_pred CCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCC-----CeEEEEECCC-------------------
Q 043172 327 RKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNE-----GYILLVSSKT------------------- 382 (564)
Q Consensus 327 dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-----g~I~lwd~~t------------------- 382 (564)
..|.||+..+-...-...+ .-..|..+.|+|.+++||.=... ..+.|..+.+
T Consensus 326 -~sisIyEtpsf~lld~Ksl---ki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhW 401 (698)
T KOG2314|consen 326 -NSISIYETPSFMLLDKKSL---KISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHW 401 (698)
T ss_pred -ceEEEEecCceeeeccccc---CCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEe
Confidence 4688888765332211111 11247778888888777663211 1122222211
Q ss_pred ---CcEE-------------------------------EEeeecCcEEEEEEecCCCEEEEEeC---CCeEEEEECCC-C
Q 043172 383 ---KELI-------------------------------GTLKMNGTVRSLAFADDGKQLLSSGG---DGQVYHWDLRT-R 424 (564)
Q Consensus 383 ---~~~~-------------------------------~~~~~~~~V~~l~~spdg~~l~s~s~---dg~V~lwD~~~-~ 424 (564)
|..+ ..+.....|..++|-|.|..+++-+. ..++.+|-+.+ .
T Consensus 402 Qk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~ 481 (698)
T KOG2314|consen 402 QKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNI 481 (698)
T ss_pred ccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCC
Confidence 1111 01112345778899999987776654 35788888773 2
Q ss_pred ---ceeEEEeecCCcceEEEEECCCCCEEEEE---eCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEE
Q 043172 425 ---TCIHRAVDEGCINGTALCTSPDGTFFAAG---SDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILA 498 (564)
Q Consensus 425 ---~~~~~~~~~~~~~i~~l~~sp~g~~lasg---s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La 498 (564)
+.+..+.. ...+.+.|+|.|++++++ |..|.+..||+... ....+-.......+.+.|.|.|+|++
T Consensus 482 ~~~~lVk~~dk---~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a-----~~k~~~~~eh~~at~veWDPtGRYvv 553 (698)
T KOG2314|consen 482 KKPSLVKELDK---KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYA-----DLKDTASPEHFAATEVEWDPTGRYVV 553 (698)
T ss_pred Cchhhhhhhcc---cccceEEEcCCCcEEEEEEecccccceEEEecchh-----hhhhccCccccccccceECCCCCEEE
Confidence 22222322 345789999999998876 46789999998842 12222222234567899999999999
Q ss_pred EEecCC----CCeEEEEEcCC
Q 043172 499 ICSTMK----KNSLKLIHIPS 515 (564)
Q Consensus 499 ~~s~~~----d~~I~lwdl~s 515 (564)
+++... +...+||++..
T Consensus 554 T~ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 554 TSSSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred EeeehhhhccccceEEEEeec
Confidence 988632 45567777753
No 287
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.08 E-value=5.1e-08 Score=102.10 Aligned_cols=192 Identities=13% Similarity=0.081 Sum_probs=127.8
Q ss_pred CCeeEEEEcCCCCE-EEEEeCC---CcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEe---CCCeEEEEEC
Q 043172 263 GPINSVQFHRNAQL-LLVAGLD---RRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAG---RRKFFYSLDL 335 (564)
Q Consensus 263 ~~V~~l~fspdg~~-l~s~s~d---g~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~---~dg~i~iwdl 335 (564)
+.+...+|+|+|+. ++..+.. ..|.++++.++....+. ...+......|+|||+.|+... .+..|+++++
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt---~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl 264 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA---SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDT 264 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe---cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEEC
Confidence 37789999999984 6655444 45777777654433332 2445566788999999887653 2457999999
Q ss_pred CCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCC---CeEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEEeC
Q 043172 336 VKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNE---GYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSGG 412 (564)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d---g~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s~ 412 (564)
.++...++....+ ......|+|||+.|+..+.. ..|+++++.+++....... +. ....|+|+|+.|+..+.
T Consensus 265 ~~g~~~~LT~~~~----~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~-~~~~~SPDG~~Ia~~~~ 338 (419)
T PRK04043 265 NTKTLTQITNYPG----IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK-NNSSVSTYKNYIVYSSR 338 (419)
T ss_pred CCCcEEEcccCCC----ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CC-cCceECCCCCEEEEEEc
Confidence 8887665433332 12345799999988887643 2788999988876443332 21 23589999998887765
Q ss_pred C---------CeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCC-C--cEEEEeCCc
Q 043172 413 D---------GQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDS-G--IVNVYNRQE 466 (564)
Q Consensus 413 d---------g~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~d-g--~V~iwd~~~ 466 (564)
. ..|++.|+.++.. ..+.... ......|+|+|+.|+..+.. + .+.++++..
T Consensus 339 ~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~~--~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 339 ETNNEFGKNTFNLYLISTNSDYI-RRLTANG--VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CCCcccCCCCcEEEEEECCCCCe-EECCCCC--CcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 3 3788999987764 3343332 22358899999988776543 2 355666654
No 288
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.06 E-value=5.8e-07 Score=87.67 Aligned_cols=221 Identities=18% Similarity=0.188 Sum_probs=144.9
Q ss_pred EEEEee-CCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEc-CCCCEEEEEeCCCeEEEEECCCCcEEEE
Q 043172 311 KASFLP-DGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVS-PDSSVIAFVGNEGYILLVSSKTKELIGT 388 (564)
Q Consensus 311 ~l~fsp-dg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~s-pdg~~la~~~~dg~I~lwd~~t~~~~~~ 388 (564)
+++|.+ ++..+++-...+.|+.|+..++....+ ...+ ...+++. +++ .|+++.. +.+.++|+.+++....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~-~~~~-----~~G~~~~~~~g-~l~v~~~-~~~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVI-DLPG-----PNGMAFDRPDG-RLYVADS-GGIAVVDPDTGKVTVL 75 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE-ESSS-----EEEEEEECTTS-EEEEEET-TCEEEEETTTTEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEE-ecCC-----CceEEEEccCC-EEEEEEc-CceEEEecCCCcEEEE
Confidence 577888 555555555789999999998876431 2221 5667777 565 4455555 4455669998866554
Q ss_pred eee------cCcEEEEEEecCCCEEEEEeCC--------CeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEE-EE
Q 043172 389 LKM------NGTVRSLAFADDGKQLLSSGGD--------GQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFA-AG 453 (564)
Q Consensus 389 ~~~------~~~V~~l~~spdg~~l~s~s~d--------g~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~la-sg 453 (564)
+.. ....+++++.|+|++.++.... |.|+.++.. ++.......- .....|+|+|+++.|+ +-
T Consensus 76 ~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~--~~pNGi~~s~dg~~lyv~d 152 (246)
T PF08450_consen 76 ADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGL--GFPNGIAFSPDGKTLYVAD 152 (246)
T ss_dssp EEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEE--SSEEEEEEETTSSEEEEEE
T ss_pred eeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCc--ccccceEECCcchheeecc
Confidence 442 2468899999999977766543 678888887 5544333322 2457899999998765 55
Q ss_pred eCCCcEEEEeCCcccC--CcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCC
Q 043172 454 SDSGIVNVYNRQEFLG--GKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQY 531 (564)
Q Consensus 454 s~dg~V~iwd~~~~~~--~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~ 531 (564)
+..+.|..|++..... .....+..+.......-.+++..+|++.++... .+.|.+++.. ++.+..+... ...
T Consensus 153 s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~--~~~I~~~~p~-G~~~~~i~~p---~~~ 226 (246)
T PF08450_consen 153 SFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG--GGRIVVFDPD-GKLLREIELP---VPR 226 (246)
T ss_dssp TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET--TTEEEEEETT-SCEEEEEE-S---SSS
T ss_pred cccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC--CCEEEEECCC-ccEEEEEcCC---CCC
Confidence 7788899999864311 112233333433345788999999988776665 7899999987 8877766554 246
Q ss_pred cEEEEEe-CCCCEEEEEc
Q 043172 532 PRCLDFS-PGGGFMAVGN 548 (564)
Q Consensus 532 V~~l~fs-pdg~~Lasgs 548 (564)
+++++|. |+...|++.+
T Consensus 227 ~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 227 PTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEEEEESTTSSEEEEEE
T ss_pred EEEEEEECCCCCEEEEEe
Confidence 8999994 6766666543
No 289
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.04 E-value=4.1e-09 Score=99.74 Aligned_cols=282 Identities=14% Similarity=0.164 Sum_probs=171.9
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCC---CceeEEEEeCC------------cCeEEEEEeeCC--CEEEEE
Q 043172 262 TGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKR---NTKIQSIFLED------------CPVRKASFLPDG--SQAIIA 324 (564)
Q Consensus 262 ~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~---~~~~~~~~~~~------------~~I~~l~fspdg--~~l~s~ 324 (564)
...|++|.|...|.||++|...|.|.+|.-.... .+....+++|. ..|..+.|..++ ..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4579999999999999999999999999764322 22333444443 357788887543 456777
Q ss_pred eCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEE--------EeC-CCeEEEEECCCCcEEEEeeecCcE
Q 043172 325 GRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAF--------VGN-EGYILLVSSKTKELIGTLKMNGTV 395 (564)
Q Consensus 325 ~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~--------~~~-dg~I~lwd~~t~~~~~~~~~~~~V 395 (564)
+.+++|++|.+.......+..-.- -.++. +|-+.-+.+ .+. +..|.. ....+..-.|...|
T Consensus 106 tNdktiKlWKiyeknlk~va~nnl-----s~~~~-~~~~g~~~s~~~l~lprls~hd~iiaa----~p~rvyaNaH~yhi 175 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNL-----SDSFH-SPMGGPLTSTKELLLPRLSEHDEIIAA----KPCRVYANAHPYHI 175 (460)
T ss_pred cCCceeeeeeeecccchhhhcccc-----ccccc-cccCCCcCCHHHhhcccccccceEEEe----ccceeccccceeEe
Confidence 889999999987654322211000 00111 111111100 010 111111 11111222277789
Q ss_pred EEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEee---cC----CcceEEEEECCCC-CEEEEEeCCCcEEEEeCCcc
Q 043172 396 RSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVD---EG----CINGTALCTSPDG-TFFAAGSDSGIVNVYNRQEF 467 (564)
Q Consensus 396 ~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~---~~----~~~i~~l~~sp~g-~~lasgs~dg~V~iwd~~~~ 467 (564)
.++.|+.|...++++ .|-.|.+|++.-...-..+.+ +. ..-|++..|+|.. ..+...+..|.|++-|++..
T Consensus 176 NSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~ 254 (460)
T COG5170 176 NSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQS 254 (460)
T ss_pred eeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhh
Confidence 999999998887776 567899999875332222222 21 1236788899863 56777788999999999853
Q ss_pred c-CCcceeeE----------EccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCC-ceeccCCCCCCC-------
Q 043172 468 L-GGKRKPIK----------TIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSY-NVFSNWPPANRN------- 528 (564)
Q Consensus 468 ~-~~~~~~~~----------~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~-~~~~~~~~~~~~------- 528 (564)
. ...++.+. -+......|+.+.|+++|+++++-.. .+|+|||+... .++.++|.+...
T Consensus 255 alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy---ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~ 331 (460)
T COG5170 255 ALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY---LTVKIWDVNMAKNPIKTIPMHCDLMDELNDV 331 (460)
T ss_pred hhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc---ceEEEEecccccCCceeechHHHHHHHHHhh
Confidence 1 01111111 12234568899999999999998775 79999999754 334444332110
Q ss_pred --CCC---cEEEEEeCCCCEEEEEcCCCeEEEEE
Q 043172 529 --LQY---PRCLDFSPGGGFMAVGNAAGKVFLYK 557 (564)
Q Consensus 529 --~~~---V~~l~fspdg~~Lasgs~dG~V~lw~ 557 (564)
... -.-+.||-+...+.+|+.....-+|-
T Consensus 332 YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 332 YENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred hhccceeeeEEEEecCCcccccccccccceeeec
Confidence 011 23577888888888888877776665
No 290
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.02 E-value=3.4e-07 Score=86.72 Aligned_cols=236 Identities=14% Similarity=0.153 Sum_probs=132.0
Q ss_pred EEEeeCCCEEEEEeCCCeEEEEECCCC--ceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Q 043172 312 ASFLPDGSQAIIAGRRKFFYSLDLVKA--KADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTL 389 (564)
Q Consensus 312 l~fspdg~~l~s~~~dg~i~iwdl~~~--~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~ 389 (564)
++.+++|+.||+. .|..|-|-..+.. .+.....+.......-+.++||||+.+||.+...|+|.++|+.... +..+
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVI 80 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce-eEEc
Confidence 4556778777665 3556666544332 1111112332233346789999999999999999999999987533 3333
Q ss_pred e--------ecCcEEEEEEecC------CCEEEEEeCCCeEEEEECCCC-----ceeEE--EeecCCcceEEEEECCCCC
Q 043172 390 K--------MNGTVRSLAFADD------GKQLLSSGGDGQVYHWDLRTR-----TCIHR--AVDEGCINGTALCTSPDGT 448 (564)
Q Consensus 390 ~--------~~~~V~~l~~spd------g~~l~s~s~dg~V~lwD~~~~-----~~~~~--~~~~~~~~i~~l~~sp~g~ 448 (564)
. ....|.++.|.+- ...|++.+..|.++-|-+..+ +..+. +..+...+|.+++++|..+
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~ 160 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR 160 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence 3 2346777777652 235667777888877765322 22222 3335566889999999999
Q ss_pred EEEEEeCCCc-EEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCC
Q 043172 449 FFAAGSDSGI-VNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANR 527 (564)
Q Consensus 449 ~lasgs~dg~-V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~ 527 (564)
+|++|+.... -..+..... ....-+.+.. .+-.....+.+...-... .+..+|.+.+...+.. ...
T Consensus 161 LLlVgG~~~~~~~~s~a~~~---GLtaWRiL~~--~Pyyk~v~~~~~~~~~~~-----~~~~~~~~~~~~~fs~---~~~ 227 (282)
T PF15492_consen 161 LLLVGGCEQNQDGMSKASSC---GLTAWRILSD--SPYYKQVTSSEDDITASS-----KRRGLLRIPSFKFFSR---QGQ 227 (282)
T ss_pred EEEEeccCCCCCcccccccc---CceEEEEcCC--CCcEEEccccCccccccc-----cccceeeccceeeeec---ccc
Confidence 8887765322 000000000 0000011110 000111111111111111 1223444444333321 122
Q ss_pred CCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCCCC
Q 043172 528 NLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNHYH 562 (564)
Q Consensus 528 ~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~~~ 562 (564)
....|..|..||||++||+...+|.|.||++...+
T Consensus 228 ~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 228 EQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred CCCceEEEEECCCCCEEEEEEcCCeEEEEecCcch
Confidence 33679999999999999999999999999997643
No 291
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.02 E-value=1.3e-09 Score=109.98 Aligned_cols=244 Identities=14% Similarity=0.119 Sum_probs=163.6
Q ss_pred eeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCc-----eeeeccccccCCcceEEEEEcCCCCEEEEEeCC
Q 043172 298 KIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAK-----ADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNE 372 (564)
Q Consensus 298 ~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~-----~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d 372 (564)
.++.+.+|...|..++--.+.+.+++++.|++|++|.+.... .....+...| .++|..+.|-.+-++++++ |
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aH-kk~i~~igfL~~lr~i~Sc--D 803 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAH-KKPIHDIGFLADLRSIASC--D 803 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhc-cCcccceeeeeccceeeec--c
Confidence 355677888888888777788899999999999999986421 1112233344 4589999999888888765 7
Q ss_pred CeEEEEECCCCcEEEEee---ecCcEEEEEEecC--CCEEEEE-eCCCeEEEEECCCCceeEEEeec----CCcceEEEE
Q 043172 373 GYILLVSSKTKELIGTLK---MNGTVRSLAFADD--GKQLLSS-GGDGQVYHWDLRTRTCIHRAVDE----GCINGTALC 442 (564)
Q Consensus 373 g~I~lwd~~t~~~~~~~~---~~~~V~~l~~spd--g~~l~s~-s~dg~V~lwD~~~~~~~~~~~~~----~~~~i~~l~ 442 (564)
|-|++||.--+.++..+. ..+.+..+...++ ...++.+ +...+|+++|.+....+..+... ...-+.+++
T Consensus 804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia 883 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA 883 (1034)
T ss_pred CcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence 889999988777766443 2334444444443 3334333 67889999999998777666543 223467899
Q ss_pred ECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEE-EEcCCCceecc
Q 043172 443 TSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKL-IHIPSYNVFSN 521 (564)
Q Consensus 443 ~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~l-wdl~s~~~~~~ 521 (564)
+.+.|+++|+|-.+|.|.+.|.+++ +.+..+.........++ .|..+.|+.... +.++.+ |+.-++.....
T Consensus 884 Va~~GN~lAa~LSnGci~~LDaR~G-----~vINswrpmecdllqla-apsdq~L~~sal--dHslaVnWhaldgimh~q 955 (1034)
T KOG4190|consen 884 VADKGNKLAAALSNGCIAILDARNG-----KVINSWRPMECDLLQLA-APSDQALAQSAL--DHSLAVNWHALDGIMHLQ 955 (1034)
T ss_pred eccCcchhhHHhcCCcEEEEecCCC-----ceeccCCcccchhhhhc-CchhHHHHhhcc--cceeEeeehhcCCeeeec
Confidence 9999999999999999999999998 66666655444444444 456677776665 788888 98877655433
Q ss_pred CCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEE
Q 043172 522 WPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYK 557 (564)
Q Consensus 522 ~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~ 557 (564)
......+.....+ -|.-|+++.....+.+|.
T Consensus 956 ~kpppepahflqs-----vgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 956 DKPPPEPAHFLQS-----VGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred cCCCCcchhhhhc-----cCceeEEeccCcEEEEEe
Confidence 2222222122221 234455555555555553
No 292
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.00 E-value=3.6e-09 Score=110.25 Aligned_cols=293 Identities=11% Similarity=0.118 Sum_probs=183.5
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCC--CEEEEEeCCCeEEEEECCCCc
Q 043172 262 TGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDG--SQAIIAGRRKFFYSLDLVKAK 339 (564)
Q Consensus 262 ~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg--~~l~s~~~dg~i~iwdl~~~~ 339 (564)
.+++.++.++|.|+-+|.|+.-| +.+-|++..-.++....+...-.|-.+.|+|.. .+-++......-.+|++....
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 46889999999999999998776 455577655444444334444557778888743 333333344456689887554
Q ss_pred eeeecc-ccccCCcceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcE-EEEee-ecCcEEEEEEecCCCEEEEEeCCCe
Q 043172 340 ADKIGP-LVGREEKSLEFFEVSPDS-SVIAFVGNEGYILLVSSKTKEL-IGTLK-MNGTVRSLAFADDGKQLLSSGGDGQ 415 (564)
Q Consensus 340 ~~~~~~-~~~~~~~~v~~~~~spdg-~~la~~~~dg~I~lwd~~t~~~-~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~ 415 (564)
...+-- +.||. +.|+.+.|+|.. ..+++++-+..+..||+++... +.... -......+.|+-....+++.+....
T Consensus 103 ~~aIef~lhghs-raitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~ 181 (1081)
T KOG0309|consen 103 SNAIEFVLHGHS-RAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGND 181 (1081)
T ss_pred ccceEEEEecCc-cceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCc
Confidence 333322 34544 479999999965 5788999999999999997643 33333 3455678899874444555566678
Q ss_pred EEEEECCCCceeEEEeecCCcceEEEEECCC-CCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCC
Q 043172 416 VYHWDLRTRTCIHRAVDEGCINGTALCTSPD-GTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDA 494 (564)
Q Consensus 416 V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~-g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg 494 (564)
|++||++.+.........+-..+..+.|..- ...+.+.+.||+|+.||..... ..+-+++ ....+|+.-.|.|-|
T Consensus 182 i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt---~e~~~~v-tt~~piw~~r~~Pfg 257 (1081)
T KOG0309|consen 182 IFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKST---TESKRTV-TTNFPIWRGRYLPFG 257 (1081)
T ss_pred eEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccc---cccceec-cccCcceeccccccC
Confidence 9999999876544433334445566665432 2367889999999999987641 1222222 235677777788855
Q ss_pred cEEEEEecCCCCeEEEEEcCCCcee-------ccCCCCCCCCCCcEEEEEeCCCC----------EEEEEcCCCeEEEEE
Q 043172 495 QILAICSTMKKNSLKLIHIPSYNVF-------SNWPPANRNLQYPRCLDFSPGGG----------FMAVGNAAGKVFLYK 557 (564)
Q Consensus 495 ~~La~~s~~~d~~I~lwdl~s~~~~-------~~~~~~~~~~~~V~~l~fspdg~----------~Lasgs~dG~V~lw~ 557 (564)
.-.++--..+++.+.+++....... ..+.+..+|...|..+.|-..+. .|++-+.|..+++|.
T Consensus 258 ~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWp 337 (1081)
T KOG0309|consen 258 EGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWP 337 (1081)
T ss_pred ceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeee
Confidence 4333222211445555544332211 11123345556665555543322 699999999999998
Q ss_pred cCC
Q 043172 558 LNH 560 (564)
Q Consensus 558 l~~ 560 (564)
+.+
T Consensus 338 I~~ 340 (1081)
T KOG0309|consen 338 IDS 340 (1081)
T ss_pred ccH
Confidence 853
No 293
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.99 E-value=9.7e-09 Score=100.71 Aligned_cols=162 Identities=18% Similarity=0.239 Sum_probs=115.0
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCC--ceeEEEEeCCcCeEEEEEeeCCCEEEEEe---CCCeEEEEECCCC
Q 043172 264 PINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRN--TKIQSIFLEDCPVRKASFLPDGSQAIIAG---RRKFFYSLDLVKA 338 (564)
Q Consensus 264 ~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~--~~~~~~~~~~~~I~~l~fspdg~~l~s~~---~dg~i~iwdl~~~ 338 (564)
.+..+..+|.+++||++..+....++++..... .++..... ...-+++.|..+...+..+- ....+.+|....+
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 345566778888888888887777777764331 22222222 22334555555555555554 3445566665544
Q ss_pred ceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee--ecCcEEEEEEecCCCEEEEEeCCCeE
Q 043172 339 KADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK--MNGTVRSLAFADDGKQLLSSGGDGQV 416 (564)
Q Consensus 339 ~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~--~~~~V~~l~~spdg~~l~s~s~dg~V 416 (564)
.. ..+.||-. .+..++|+||+++|+++..|..|++-.....-.+..+- |..-|..++..++ ..|+++|.|++|
T Consensus 143 ~~---~~~lGhvS-ml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tl 217 (390)
T KOG3914|consen 143 RC---EPILGHVS-MLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTL 217 (390)
T ss_pred Cc---chhhhhhh-hhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcE
Confidence 43 23567665 68999999999999999999999999887766666655 8889999999865 458999999999
Q ss_pred EEEECCCCceeEEEe
Q 043172 417 YHWDLRTRTCIHRAV 431 (564)
Q Consensus 417 ~lwD~~~~~~~~~~~ 431 (564)
++||+.+++++..+.
T Consensus 218 r~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 218 RLWDITSGKLLDTCD 232 (390)
T ss_pred EEEecccCCcccccc
Confidence 999999999987654
No 294
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.91 E-value=2.3e-07 Score=86.48 Aligned_cols=193 Identities=12% Similarity=0.019 Sum_probs=134.9
Q ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEee--ecCcEE---EEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcc
Q 043172 363 SSVIAFVGNEGYILLVSSKTKELIGTLK--MNGTVR---SLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCIN 437 (564)
Q Consensus 363 g~~la~~~~dg~I~lwd~~t~~~~~~~~--~~~~V~---~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~ 437 (564)
..+||.||..|...+|...+.+....+- +...|+ ..+-+ ...+..++.|.+++++++..+......... ...
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~--~~~~~i~sndht~k~~~~~~~s~~~~~h~~-~~~ 160 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDL--KFPLNIASNDHTGKTMVVSGDSNKFAVHNQ-NLT 160 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhccc--ccceeeccCCcceeEEEEecCcccceeecc-ccc
Confidence 4588999999999999998776543332 333222 12211 234667788888888888654432222222 245
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeE-EccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCC
Q 043172 438 GTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIK-TIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSY 516 (564)
Q Consensus 438 i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~-~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~ 516 (564)
..+++++++++|+++.+....|..|.+... ....+. ........-.+..|+.....+|+++. ||++.|||++..
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~---sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Q--dg~~~I~DVR~~ 235 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDE---SEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQ--DGTCAIYDVRNM 235 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCc---cceeeeeEecccCCCceeeeeccCcceEEEEec--CCcEEEEEeccc
Confidence 788999999999999999999999998864 112222 22333445567899999999999999 999999999876
Q ss_pred ceeccCCC--CCCCCCCcEEEEEeCCCC--EEEEEcCCCeEEEEEcCCCCC
Q 043172 517 NVFSNWPP--ANRNLQYPRCLDFSPGGG--FMAVGNAAGKVFLYKLNHYHH 563 (564)
Q Consensus 517 ~~~~~~~~--~~~~~~~V~~l~fspdg~--~Lasgs~dG~V~lw~l~~~~~ 563 (564)
........ ...|.|.+..+.|+|.|. +|...-.-+.+++-|+++|.+
T Consensus 236 ~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~ 286 (344)
T KOG4532|consen 236 ATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVN 286 (344)
T ss_pred ccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCce
Confidence 54432222 234678999999998664 456666678899999998875
No 295
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.87 E-value=2.3e-07 Score=97.65 Aligned_cols=287 Identities=15% Similarity=0.081 Sum_probs=188.1
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCC------------CEEEEEeCCC
Q 043172 261 STGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDG------------SQAIIAGRRK 328 (564)
Q Consensus 261 h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg------------~~l~s~~~dg 328 (564)
|.+.-.++.|+|.| ++|.|+ ...|.+-|.. +.+.++++..|...|+.+.|.|-. -.|+++...|
T Consensus 14 ~~sN~~A~Dw~~~G-LiAygs-hslV~VVDs~--s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~G 89 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG-LIAYGS-HSLVSVVDSR--SLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISG 89 (1062)
T ss_pred CcccccccccCccc-eEEEec-CceEEEEehh--hhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccC
Confidence 45557889999988 566665 3456666654 667889999999999999998621 2456666789
Q ss_pred eEEEEECCCCceeeeccccccCCcceEEEEEcC---CC-CEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEec-
Q 043172 329 FFYSLDLVKAKADKIGPLVGREEKSLEFFEVSP---DS-SVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFAD- 402 (564)
Q Consensus 329 ~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~sp---dg-~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~sp- 402 (564)
.|.+||...+.... .+ .++..++..++|-| +. .+|+.-....+|.+|+..+|+...... ......|+.+.|
T Consensus 90 rIil~d~~~~s~~~--~l-~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPf 166 (1062)
T KOG1912|consen 90 RIILVDFVLASVIN--WL-SHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPF 166 (1062)
T ss_pred cEEEEEehhhhhhh--hh-cCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCC
Confidence 99999998876532 23 33444778888865 34 456666667899999999999988776 344567799998
Q ss_pred CCCEEEEEeCCCeEEEEECCC-------CceeEEEeecCCc-------------------------ceEEEEECCCCCEE
Q 043172 403 DGKQLLSSGGDGQVYHWDLRT-------RTCIHRAVDEGCI-------------------------NGTALCTSPDGTFF 450 (564)
Q Consensus 403 dg~~l~s~s~dg~V~lwD~~~-------~~~~~~~~~~~~~-------------------------~i~~l~~sp~g~~l 450 (564)
|.+.+...+..|.|.+.+.-. ++..+ +...++. ....++|+|.-+.+
T Consensus 167 d~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~q-I~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~ 245 (1062)
T KOG1912|consen 167 DSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQ-ITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNI 245 (1062)
T ss_pred CcceEEEEccCceEEEEeccCCCCCCCCceeEE-EecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhce
Confidence 677777777778887776532 12111 1111100 01235678877666
Q ss_pred EEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCc--EEEEEecCCCCeEEEEEcCCCceeccCCCCC--
Q 043172 451 AAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQ--ILAICSTMKKNSLKLIHIPSYNVFSNWPPAN-- 526 (564)
Q Consensus 451 asgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~--~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~-- 526 (564)
+.......+.|+|+.-. .++.++.-..+.+.-+.+-|+++ .|++.-. +|.+.||-.+........+...
T Consensus 246 lfi~~prellv~dle~~-----~~l~vvpier~~akfv~vlP~~~rd~LfclH~--nG~ltirvrk~~~~~f~~~~~~l~ 318 (1062)
T KOG1912|consen 246 LFITFPRELLVFDLEYE-----CCLAVVPIERGGAKFVDVLPDPRRDALFCLHS--NGRLTIRVRKEEPTEFKKPNASLS 318 (1062)
T ss_pred EEEEeccceEEEcchhh-----ceeEEEEeccCCcceeEeccCCCcceEEEEec--CCeEEEEEeeccCccccccchhhc
Confidence 66666778999999876 77777766666677778877764 5666666 9999999876533222111100
Q ss_pred ------------CCCCCcEEEEEeCC-CCEEEEEcCCCeEEEEEcCCCC
Q 043172 527 ------------RNLQYPRCLDFSPG-GGFMAVGNAAGKVFLYKLNHYH 562 (564)
Q Consensus 527 ------------~~~~~V~~l~fspd-g~~Lasgs~dG~V~lw~l~~~~ 562 (564)
.....+......|. ...+++--.+|.+.+|.+.+..
T Consensus 319 ~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~r 367 (1062)
T KOG1912|consen 319 MDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGR 367 (1062)
T ss_pred cccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCC
Confidence 00011222233343 3445555568888999987544
No 296
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.86 E-value=1.6e-06 Score=83.83 Aligned_cols=218 Identities=15% Similarity=0.152 Sum_probs=138.0
Q ss_pred CCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeeecCcEEEEEEecCCCE
Q 043172 327 RKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQ 406 (564)
Q Consensus 327 dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~ 406 (564)
++.|..||..+|+..-...+..... ...+. ..+++..+++++.++.|..||..+|+.+..+...+.+...- ...+..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~-~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIG-GPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCS-SEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCC-Cccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eecccc
Confidence 5789999999888755443321111 22211 23356677777899999999999999988877443322222 224556
Q ss_pred EEEEeCCCeEEEEECCCCceeEEE-eecC-Cc-ceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEcccccc
Q 043172 407 LLSSGGDGQVYHWDLRTRTCIHRA-VDEG-CI-NGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTT 483 (564)
Q Consensus 407 l~s~s~dg~V~lwD~~~~~~~~~~-~~~~-~~-~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~ 483 (564)
+++++.++.|+.+|..+++.+... .... .. ..........+..++++..+|.|..+|..++ +.+........
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG-----~~~w~~~~~~~ 153 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTG-----KLLWKYPVGEP 153 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTT-----EEEEEEESSTT
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCC-----cEEEEeecCCC
Confidence 777778889999999999998774 3221 11 1112222234778888988999999999987 66665543221
Q ss_pred c----------eeEEEEcCCCcEEEEEecCCCCe-EEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCe
Q 043172 484 K----------VDFMKFNNDAQILAICSTMKKNS-LKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGK 552 (564)
Q Consensus 484 ~----------I~~l~fspdg~~La~~s~~~d~~-I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~ 552 (564)
. +..-....++ .+++++. ++. +.+ |+.++...-..+ . ..+.. ...+.+..|++++.+|.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~--~g~~~~~-d~~tg~~~w~~~-~----~~~~~-~~~~~~~~l~~~~~~~~ 223 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVISDG-RVYVSSG--DGRVVAV-DLATGEKLWSKP-I----SGIYS-LPSVDGGTLYVTSSDGR 223 (238)
T ss_dssp -SS--EEEETTEEEEEECCTT-EEEEECC--TSSEEEE-ETTTTEEEEEEC-S----S-ECE-CEECCCTEEEEEETTTE
T ss_pred CCCcceeeecccccceEEECC-EEEEEcC--CCeEEEE-ECCCCCEEEEec-C----CCccC-CceeeCCEEEEEeCCCE
Confidence 1 1122222345 5666665 554 555 999988542222 1 11222 24577888888889999
Q ss_pred EEEEEcCCCC
Q 043172 553 VFLYKLNHYH 562 (564)
Q Consensus 553 V~lw~l~~~~ 562 (564)
|.+||+.+++
T Consensus 224 l~~~d~~tG~ 233 (238)
T PF13360_consen 224 LYALDLKTGK 233 (238)
T ss_dssp EEEEETTTTE
T ss_pred EEEEECCCCC
Confidence 9999999875
No 297
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.86 E-value=1.1e-06 Score=97.24 Aligned_cols=204 Identities=14% Similarity=0.195 Sum_probs=137.8
Q ss_pred cCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEEC----CC
Q 043172 307 CPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSS----KT 382 (564)
Q Consensus 307 ~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~----~t 382 (564)
..|.++.|..+++.++.+...|.|.+-|..+..... .|.-...|.+++||||+..++..+..+++.+..- -.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei----vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~ 144 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEI----VGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIA 144 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceee----eeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchh
Confidence 579999999999999999999999999888876543 3334447999999999999999988888776543 11
Q ss_pred CcEE-------------------EEeee----------------------cCcEEEEEEecCCCEEEEEe----CC-CeE
Q 043172 383 KELI-------------------GTLKM----------------------NGTVRSLAFADDGKQLLSSG----GD-GQV 416 (564)
Q Consensus 383 ~~~~-------------------~~~~~----------------------~~~V~~l~~spdg~~l~s~s----~d-g~V 416 (564)
-+.+ ..++. ...=+.|+|--||.++++.. .+ ..|
T Consensus 145 E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rki 224 (1265)
T KOG1920|consen 145 EKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKI 224 (1265)
T ss_pred ccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeE
Confidence 1111 11110 01123589999999998843 23 789
Q ss_pred EEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEe---CCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCC
Q 043172 417 YHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGS---DSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNND 493 (564)
Q Consensus 417 ~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs---~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspd 493 (564)
++||-. +..-. .......--.+++|-|.|.++|+-. +++.|.+|..+.. ......-.+......|..++|+.+
T Consensus 225 rV~drE-g~Lns-~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL--~hg~f~l~~p~de~~ve~L~Wns~ 300 (1265)
T KOG1920|consen 225 RVYDRE-GALNS-TSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGL--RHGEFVLPFPLDEKEVEELAWNSN 300 (1265)
T ss_pred EEeccc-chhhc-ccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCc--cccccccCCcccccchheeeecCC
Confidence 999977 44322 2212122236899999999988753 4567999987653 111111122223345899999999
Q ss_pred CcEEEEEecCC-CCeEEEEEcCCCce
Q 043172 494 AQILAICSTMK-KNSLKLIHIPSYNV 518 (564)
Q Consensus 494 g~~La~~s~~~-d~~I~lwdl~s~~~ 518 (564)
+.+||+-.... ...|++|.+.+..-
T Consensus 301 sdiLAv~~~~~e~~~v~lwt~~NyhW 326 (1265)
T KOG1920|consen 301 SDILAVVTSNLENSLVQLWTTGNYHW 326 (1265)
T ss_pred CCceeeeecccccceEEEEEecCeEE
Confidence 99999833322 44599999987643
No 298
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.85 E-value=1.7e-08 Score=105.43 Aligned_cols=248 Identities=13% Similarity=0.124 Sum_probs=160.6
Q ss_pred CeeEEEEcCCC--CEEEEEeCCCcEEEEEecCCC-CceeEEEEeCCcCeEEEEEeeCC-CEEEEEeCCCeEEEEECCCCc
Q 043172 264 PINSVQFHRNA--QLLLVAGLDRRLRFFQIDGKR-NTKIQSIFLEDCPVRKASFLPDG-SQAIIAGRRKFFYSLDLVKAK 339 (564)
Q Consensus 264 ~V~~l~fspdg--~~l~s~s~dg~I~lwd~~~~~-~~~~~~~~~~~~~I~~l~fspdg-~~l~s~~~dg~i~iwdl~~~~ 339 (564)
.|-.+.|+|.. .+-++......-.+|++.... +..-..+++|...|+.+-|+|+. ..+++++.+.+++.||+.+..
T Consensus 69 ~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~ 148 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH 148 (1081)
T ss_pred hhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC
Confidence 36667777743 344444445556688886433 33445678999999999999854 567888899999999998865
Q ss_pred eeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCC-cEEEEee-ecCcEEEEEEec-CCCEEEEEeCCCeE
Q 043172 340 ADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTK-ELIGTLK-MNGTVRSLAFAD-DGKQLLSSGGDGQV 416 (564)
Q Consensus 340 ~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~-~~~~~~~-~~~~V~~l~~sp-dg~~l~s~s~dg~V 416 (564)
.. +.....-+. ....++|+-....+.+.+....|.+||++.+ .++..++ |-..|+.++|+. .-..+.+++.||+|
T Consensus 149 ~p-~ys~~~w~s-~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tv 226 (1081)
T KOG0309|consen 149 RP-FYSTSSWRS-AASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTV 226 (1081)
T ss_pred cc-eeeeecccc-cCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCce
Confidence 42 222222222 3567888875555555567788999999865 4566666 777888888876 23467888999999
Q ss_pred EEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEe--CCCcEEEEeCCccc-----CCcceeeEEccccccceeEEE
Q 043172 417 YHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGS--DSGIVNVYNRQEFL-----GGKRKPIKTIENLTTKVDFMK 489 (564)
Q Consensus 417 ~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs--~dg~V~iwd~~~~~-----~~~~~~~~~~~~~~~~I~~l~ 489 (564)
.+||.................+..-++-|-|.-.++-- .+..|.+++.+... ...++|++++.+|...|....
T Consensus 227 kfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFl 306 (1081)
T KOG0309|consen 227 KFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFL 306 (1081)
T ss_pred eeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHh
Confidence 99998754332222222333455555666544222211 11244444433321 124689999999999887766
Q ss_pred EcCCCc----------EEEEEecCCCCeEEEEEcCC
Q 043172 490 FNNDAQ----------ILAICSTMKKNSLKLIHIPS 515 (564)
Q Consensus 490 fspdg~----------~La~~s~~~d~~I~lwdl~s 515 (564)
|-..+. .|++-|. |..+|+|-+.+
T Consensus 307 WR~r~e~~~d~d~rdfQLVTWSk--D~~lrlWpI~~ 340 (1081)
T KOG0309|consen 307 WRKRKECDGDYDSRDFQLVTWSK--DQTLRLWPIDS 340 (1081)
T ss_pred hhhcccccCCCCccceeEEEeec--CCceEeeeccH
Confidence 644222 4677777 99999998864
No 299
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.83 E-value=7.8e-06 Score=78.98 Aligned_cols=217 Identities=18% Similarity=0.128 Sum_probs=135.9
Q ss_pred CCcEEEEEecCCCCceeEEEEeC--CcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEc
Q 043172 283 DRRLRFFQIDGKRNTKIQSIFLE--DCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVS 360 (564)
Q Consensus 283 dg~I~lwd~~~~~~~~~~~~~~~--~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~s 360 (564)
+|+|..||.. ++..+-..... .....+. ..+++.++++++.++.++.||..+|+..-...+.+..... . .
T Consensus 2 ~g~l~~~d~~--tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~---~--~ 73 (238)
T PF13360_consen 2 DGTLSALDPR--TGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA---P--V 73 (238)
T ss_dssp TSEEEEEETT--TTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG---E--E
T ss_pred CCEEEEEECC--CCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce---e--e
Confidence 4667777664 23344444331 1111211 3346778888889999999999999875544443322211 1 2
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEEEe-eec----CcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCC
Q 043172 361 PDSSVIAFVGNEGYILLVSSKTKELIGTL-KMN----GTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGC 435 (564)
Q Consensus 361 pdg~~la~~~~dg~I~lwd~~t~~~~~~~-~~~----~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~ 435 (564)
..+..+++++.++.|+.+|+.+|+.+... ... ...........+..++++..++.|+.+|+.+|+.+........
T Consensus 74 ~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~ 153 (238)
T PF13360_consen 74 VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP 153 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred ecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence 23556677778889999999999999884 322 1122333333478888888899999999999999877765331
Q ss_pred cc---------eEEEEECCCCCEEEEEeCCCc-EEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCC
Q 043172 436 IN---------GTALCTSPDGTFFAAGSDSGI-VNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKK 505 (564)
Q Consensus 436 ~~---------i~~l~~sp~g~~lasgs~dg~-V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d 505 (564)
.. +..-.+..++ .+++++.+|. +.+ |+.++ +.+.... ...+..+ ...++..|++++. +
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg-----~~~w~~~--~~~~~~~-~~~~~~~l~~~~~--~ 221 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATG-----EKLWSKP--ISGIYSL-PSVDGGTLYVTSS--D 221 (238)
T ss_dssp -SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTT-----EEEEEEC--SS-ECEC-EECCCTEEEEEET--T
T ss_pred CCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCC-----CEEEEec--CCCccCC-ceeeCCEEEEEeC--C
Confidence 11 1122222344 7777777775 555 99886 5443222 2223321 4567788888886 8
Q ss_pred CeEEEEEcCCCcee
Q 043172 506 NSLKLIHIPSYNVF 519 (564)
Q Consensus 506 ~~I~lwdl~s~~~~ 519 (564)
+.|..||+.+++..
T Consensus 222 ~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 222 GRLYALDLKTGKVV 235 (238)
T ss_dssp TEEEEEETTTTEEE
T ss_pred CEEEEEECCCCCEE
Confidence 99999999998764
No 300
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.81 E-value=8.1e-08 Score=89.12 Aligned_cols=184 Identities=19% Similarity=0.296 Sum_probs=117.7
Q ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEeeecC-----cEEEEEEecCCCEEEEEe-----CCCeEEEEECCCCceeEEEe
Q 043172 362 DSSVIAFVGNEGYILLVSSKTKELIGTLKMNG-----TVRSLAFADDGKQLLSSG-----GDGQVYHWDLRTRTCIHRAV 431 (564)
Q Consensus 362 dg~~la~~~~dg~I~lwd~~t~~~~~~~~~~~-----~V~~l~~spdg~~l~s~s-----~dg~V~lwD~~~~~~~~~~~ 431 (564)
.++-+++++.||.+.+++.+. ...+.+.- .-.+.++...++.+.++. .-+..+.|+++..+.+..-.
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~---~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~ 176 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDK---DLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSK 176 (319)
T ss_pred cCCceEecCCCceEEEEechH---HHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccc
Confidence 356789999999999998765 11111111 112233333455444432 12456677766433322211
Q ss_pred ecCCcceEEEEECCCCC-EEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcC-CCcEEEEEecCCCCeEE
Q 043172 432 DEGCINGTALCTSPDGT-FFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNN-DAQILAICSTMKKNSLK 509 (564)
Q Consensus 432 ~~~~~~i~~l~~sp~g~-~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fsp-dg~~La~~s~~~d~~I~ 509 (564)
... ..++++|-+|..+ .+++|+.+|.+.+||.+.. .-|+..+..|..+|+.+-|+| ++..|++++. ||.+.
T Consensus 177 ~~~-~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~----~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~se--dGslw 249 (319)
T KOG4714|consen 177 KAL-DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNV----AMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSE--DGSLW 249 (319)
T ss_pred ccc-ccchhhhCCcccccEEEEecCCCeEEEEEcccc----cchHHHHHHhhhhhhheeccCCCchheeEecC--CCcEE
Confidence 112 2378888888754 6778899999999999975 467778889999999999999 5788999999 99999
Q ss_pred EEEcCCC--------ceeccCCCCC-------------CCCCCcEEEEEeCCCCEEEEEcCCCeEEEEE
Q 043172 510 LIHIPSY--------NVFSNWPPAN-------------RNLQYPRCLDFSPGGGFMAVGNAAGKVFLYK 557 (564)
Q Consensus 510 lwdl~s~--------~~~~~~~~~~-------------~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~ 557 (564)
.||..+. .....|-... .....|++ |.--|..|++|++-+.|++++
T Consensus 250 ~wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~Sins--fDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 250 HWDASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINS--FDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred EEcCCCceEEecCccccccccccCCcccceEeeeccccccceeeee--eeccCceEEeccccceEEEec
Confidence 9998741 1111121110 00112232 333578899999999999875
No 301
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.79 E-value=5.7e-06 Score=85.23 Aligned_cols=265 Identities=15% Similarity=0.141 Sum_probs=149.9
Q ss_pred cCCCCEEEEEe---------CCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCcee
Q 043172 271 HRNAQLLLVAG---------LDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKAD 341 (564)
Q Consensus 271 spdg~~l~s~s---------~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~ 341 (564)
|||+++++... ..+.+.||++..+.... +......+..+.|||+|+.++... ++.|+++++.++...
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~---l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~ 76 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP---LTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQET 76 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE---SS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE---CcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeE
Confidence 68888877742 34678888887543222 222256788999999999999886 578999999888665
Q ss_pred eeccccc-------cC--------CcceEEEEEcCCCCEEEEEeCC-C--------------------------------
Q 043172 342 KIGPLVG-------RE--------EKSLEFFEVSPDSSVIAFVGNE-G-------------------------------- 373 (564)
Q Consensus 342 ~~~~~~~-------~~--------~~~v~~~~~spdg~~la~~~~d-g-------------------------------- 373 (564)
++.. .| .. -..-..+.|||||++||+...| .
T Consensus 77 ~lT~-dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~n 155 (353)
T PF00930_consen 77 QLTT-DGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPN 155 (353)
T ss_dssp ESES---TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS--
T ss_pred Eecc-ccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcC
Confidence 4432 11 00 0123468899999999886432 1
Q ss_pred ---eEEEEECCCCcEEEE-ee-----ecCcEEEEEEecCCCEEEEE--eCC---CeEEEEECCCCceeEEEeecCCcce-
Q 043172 374 ---YILLVSSKTKELIGT-LK-----MNGTVRSLAFADDGKQLLSS--GGD---GQVYHWDLRTRTCIHRAVDEGCING- 438 (564)
Q Consensus 374 ---~I~lwd~~t~~~~~~-~~-----~~~~V~~l~~spdg~~l~s~--s~d---g~V~lwD~~~~~~~~~~~~~~~~~i- 438 (564)
.+.|+++.+++.... .. ...-+..+.|.+++..|+.. +.+ ..+.++|..++.+...........+
T Consensus 156 p~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~ 235 (353)
T PF00930_consen 156 PRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVD 235 (353)
T ss_dssp -EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSS
T ss_pred CceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCccee
Confidence 133455555443211 11 12357889999998844443 232 3578889887766444433222221
Q ss_pred --EEEEEC-CCCC-EEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeE-EEEcCCCcEEEEEecC-C--CCeEEE
Q 043172 439 --TALCTS-PDGT-FFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDF-MKFNNDAQILAICSTM-K--KNSLKL 510 (564)
Q Consensus 439 --~~l~~s-p~g~-~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~-l~fspdg~~La~~s~~-~--d~~I~l 510 (564)
..+.+. +++. +|.....+|.-+||-+... ......+....-.|.. +.++++++.|+..+.. . ...|..
T Consensus 236 ~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~----~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~ 311 (353)
T PF00930_consen 236 VYDPPHFLGPDGNEFLWISERDGYRHLYLYDLD----GGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYR 311 (353)
T ss_dssp SSSEEEE-TTTSSEEEEEEETTSSEEEEEEETT----SSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEE
T ss_pred eecccccccCCCCEEEEEEEcCCCcEEEEEccc----ccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEE
Confidence 244444 5555 5555557776555544432 1234455555556644 7788888777655442 1 234555
Q ss_pred EEcC-CCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEc
Q 043172 511 IHIP-SYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGN 548 (564)
Q Consensus 511 wdl~-s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs 548 (564)
.++. .+... .+..... .-..+.|||+|++++...
T Consensus 312 v~~~~~~~~~-~LT~~~~---~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 312 VSLDSGGEPK-CLTCEDG---DHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp EETTETTEEE-ESSTTSS---TTEEEEE-TTSSEEEEEE
T ss_pred EEeCCCCCeE-eccCCCC---CceEEEECCCCCEEEEEE
Confidence 5666 44443 3322221 116899999999987543
No 302
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.78 E-value=3.4e-06 Score=89.53 Aligned_cols=226 Identities=17% Similarity=0.131 Sum_probs=138.9
Q ss_pred CCCEEEEEe-CCCeEEEEECCCCceeeeccccccCCcceEE-------------------EEEcCCCCEEEEEe-CCCeE
Q 043172 317 DGSQAIIAG-RRKFFYSLDLVKAKADKIGPLVGREEKSLEF-------------------FEVSPDSSVIAFVG-NEGYI 375 (564)
Q Consensus 317 dg~~l~s~~-~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~-------------------~~~spdg~~la~~~-~dg~I 375 (564)
||++|+.-. .+..|-..++...++.++..++.... +.. +-++|+|+.+...+ ..+.+
T Consensus 140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~--~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~v 217 (635)
T PRK02888 140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNVQG--IHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLF 217 (635)
T ss_pred ceeEEEEecCCCcceEEEECccEeeceeEeCCCccC--ccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEE
Confidence 678888765 35566667776665555544332211 122 22345665553332 34778
Q ss_pred EEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEEeC----------------------------------------CCe
Q 043172 376 LLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSGG----------------------------------------DGQ 415 (564)
Q Consensus 376 ~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s~----------------------------------------dg~ 415 (564)
.++|..+.+...++...+....++++|+|+++++.+. ++.
T Consensus 218 SvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~ 297 (635)
T PRK02888 218 TAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSK 297 (635)
T ss_pred EEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCE
Confidence 8889999888888887777788889999988877751 245
Q ss_pred EEEEECCC-----CceeEEEeecCCcceEEEEECCCCCEEEEEe-CCCcEEEEeCCcccC---Cc----ceeeEEccccc
Q 043172 416 VYHWDLRT-----RTCIHRAVDEGCINGTALCTSPDGTFFAAGS-DSGIVNVYNRQEFLG---GK----RKPIKTIENLT 482 (564)
Q Consensus 416 V~lwD~~~-----~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs-~dg~V~iwd~~~~~~---~~----~~~~~~~~~~~ 482 (564)
|.++|.++ ...+..+.... ....+.++|+|+++++++ .+.+|.|+|+..... .. ...+....- .
T Consensus 298 V~VID~~t~~~~~~~v~~yIPVGK--sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-G 374 (635)
T PRK02888 298 VPVVDGRKAANAGSALTRYVPVPK--NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-G 374 (635)
T ss_pred EEEEECCccccCCcceEEEEECCC--CccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-C
Confidence 77888776 33444333322 346789999999887765 489999999987510 00 011223322 3
Q ss_pred cceeEEEEcCCCcEEEEEecCCCCeEEEEEcCC----------CceeccCCCCCC--CCCCcEEEEEeCCCCEEEEEcC
Q 043172 483 TKVDFMKFNNDAQILAICSTMKKNSLKLIHIPS----------YNVFSNWPPANR--NLQYPRCLDFSPGGGFMAVGNA 549 (564)
Q Consensus 483 ~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s----------~~~~~~~~~~~~--~~~~V~~l~fspdg~~Lasgs~ 549 (564)
-...+.+|.++|....+..- |..|-.|++.. ..++..++.+-. |......=.-.|+|+||++.+.
T Consensus 375 lGPLHTaFDg~G~aytslf~--dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 375 LGPLHTAFDGRGNAYTTLFL--DSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNK 451 (635)
T ss_pred CCcceEEECCCCCEEEeEee--cceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccc
Confidence 34457899999986666666 89999999976 234443433321 1111111123577888877654
No 303
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.77 E-value=7.8e-08 Score=94.44 Aligned_cols=159 Identities=9% Similarity=0.036 Sum_probs=110.9
Q ss_pred EEEEEeeCCCEEEEEeCCCeEEEEECCCCce----eeeccccccCCcceEEEEEcCCCCEEEE---EeCCCeEEEEECCC
Q 043172 310 RKASFLPDGSQAIIAGRRKFFYSLDLVKAKA----DKIGPLVGREEKSLEFFEVSPDSSVIAF---VGNEGYILLVSSKT 382 (564)
Q Consensus 310 ~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~----~~~~~~~~~~~~~v~~~~~spdg~~la~---~~~dg~I~lwd~~t 382 (564)
..+..++.++.|+++...+..+++++..... .....+.. ..+.+.|..+...+.+ ++....+.+|....
T Consensus 66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~----~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~ 141 (390)
T KOG3914|consen 66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPK----RPTAISFIREDTSVLVADKAGDVYSFDILSADS 141 (390)
T ss_pred cccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeeccc----CcceeeeeeccceEEEEeecCCceeeeeecccc
Confidence 3445667777888777777766666554331 11111111 1223333333333333 34445666666666
Q ss_pred CcEEEEeeecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEE
Q 043172 383 KELIGTLKMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVY 462 (564)
Q Consensus 383 ~~~~~~~~~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iw 462 (564)
+.....+.|-..+++++|+||+++|+++..|..|++-.......+..|-..|..-|..+++-++ +.|++||.|++|++|
T Consensus 142 ~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~W 220 (390)
T KOG3914|consen 142 GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLW 220 (390)
T ss_pred cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEE
Confidence 7777777799999999999999999999999999998888777777777777767888888755 568999999999999
Q ss_pred eCCcccCCcceeeEEc
Q 043172 463 NRQEFLGGKRKPIKTI 478 (564)
Q Consensus 463 d~~~~~~~~~~~~~~~ 478 (564)
|+.++ +.+.++
T Consensus 221 d~~sg-----k~L~t~ 231 (390)
T KOG3914|consen 221 DITSG-----KLLDTC 231 (390)
T ss_pred ecccC-----Cccccc
Confidence 99998 555544
No 304
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=1.2e-07 Score=94.03 Aligned_cols=285 Identities=16% Similarity=0.149 Sum_probs=189.6
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecC-CCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeC-CCeEEEEECCCC
Q 043172 261 STGPINSVQFHRNAQLLLVAGLDRRLRFFQIDG-KRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGR-RKFFYSLDLVKA 338 (564)
Q Consensus 261 h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~-~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~-dg~i~iwdl~~~ 338 (564)
|...|+.+.-+ -..++++|+.||.++.|.-.. .-...+..+..|-..|.+++.+-+|..+++.+. |..++++|+.+-
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 77788877654 457999999999999996543 122334445567888999999999988888776 999999998876
Q ss_pred ceeeeccccccCCcceEEEEEcCCC--CEEEEE-eCCCeEEEEECCCCc-EEEEee--ecCcEEEEEEecCCCEEEEEeC
Q 043172 339 KADKIGPLVGREEKSLEFFEVSPDS--SVIAFV-GNEGYILLVSSKTKE-LIGTLK--MNGTVRSLAFADDGKQLLSSGG 412 (564)
Q Consensus 339 ~~~~~~~~~~~~~~~v~~~~~spdg--~~la~~-~~dg~I~lwd~~t~~-~~~~~~--~~~~V~~l~~spdg~~l~s~s~ 412 (564)
.......+..... .-++..+|.. ..|++. -.+|.|.++|-...- ....+. |..+|..+.++|-+..+++...
T Consensus 87 DminmiKL~~lPg--~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~ 164 (558)
T KOG0882|consen 87 DMINMIKLVDLPG--FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDI 164 (558)
T ss_pred chhhhcccccCCC--ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccc
Confidence 5432222222211 1122233321 133333 357999999976543 333333 8999999999999999999988
Q ss_pred CCeEEEEECCC------CceeEEEee--------cCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEc
Q 043172 413 DGQVYHWDLRT------RTCIHRAVD--------EGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTI 478 (564)
Q Consensus 413 dg~V~lwD~~~------~~~~~~~~~--------~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~ 478 (564)
.|.|.-|.... .+....+.. ......+++.|+|+|..+.+-+.|..|+++...++ +.+..+
T Consensus 165 ~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtG-----klvqei 239 (558)
T KOG0882|consen 165 SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTG-----KLVQEI 239 (558)
T ss_pred cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccc-----hhhhhh
Confidence 99999999873 111111111 11224579999999999999999999999999886 222111
Q ss_pred c--------------------------------cc-ccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCC
Q 043172 479 E--------------------------------NL-TTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPA 525 (564)
Q Consensus 479 ~--------------------------------~~-~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~ 525 (564)
. .| ...-+.+.|...|++|+.++- -.|+++++.++++.+.+-..
T Consensus 240 DE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~---~gikvin~~tn~v~ri~gk~ 316 (558)
T KOG0882|consen 240 DEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTI---LGIKVINLDTNTVVRILGKD 316 (558)
T ss_pred hccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecc---eeEEEEEeecCeEEEEeccc
Confidence 1 11 223456789999999999885 46899999888776543211
Q ss_pred C---------------CCCC-------CcEEEEEeCCCCEEEEEcCCCeEEEE
Q 043172 526 N---------------RNLQ-------YPRCLDFSPGGGFMAVGNAAGKVFLY 556 (564)
Q Consensus 526 ~---------------~~~~-------~V~~l~fspdg~~Lasgs~dG~V~lw 556 (564)
. .+.. .-..+.+-+|-..++++-...++++|
T Consensus 317 e~ir~~~~sl~q~~~k~~~~~~~~~a~~np~~~~~~dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 317 EAIRFTRLSLYQGAQKSNLAALEVAASNNPLLEFQKDPTIVCTAFKKNRFYLF 369 (558)
T ss_pred hhhhhhhHHHHhhhhhccchhhhhhhccCcccccCCCCeEEEeeeecceEEEE
Confidence 0 0000 01123356676777777777888887
No 305
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.75 E-value=5.9e-08 Score=103.77 Aligned_cols=183 Identities=17% Similarity=0.256 Sum_probs=130.4
Q ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEeee-cCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEE
Q 043172 362 DSSVIAFVGNEGYILLVSSKTKELIGTLKM-NGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTA 440 (564)
Q Consensus 362 dg~~la~~~~dg~I~lwd~~t~~~~~~~~~-~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~ 440 (564)
++..++.|+....+..+|+++.+..+.... .+.|+-+.. +++++.+|...|+|.+-|.++.+.++++..+.. .+.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~-siS- 221 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSG-SIS- 221 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeecccc-cee-
Confidence 455677788888899999999988777663 334555544 588999999999999999999999999887654 344
Q ss_pred EEECCCCCEEEEEeC---------CCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCC-CcEEEEEecCCCCeEEE
Q 043172 441 LCTSPDGTFFAAGSD---------SGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNND-AQILAICSTMKKNSLKL 510 (564)
Q Consensus 441 l~~sp~g~~lasgs~---------dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspd-g~~La~~s~~~d~~I~l 510 (564)
.|+-.|+.|++++. |..|+|||++.. +.+..+.-+..+ .-+.|+|. ...++++|. .|...+
T Consensus 222 -DfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmm-----ral~PI~~~~~P-~flrf~Psl~t~~~V~S~--sGq~q~ 292 (1118)
T KOG1275|consen 222 -DFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMM-----RALSPIQFPYGP-QFLRFHPSLTTRLAVTSQ--SGQFQF 292 (1118)
T ss_pred -eeeccCCeEEEeecccccccccccchhhhhhhhhh-----hccCCcccccCc-hhhhhcccccceEEEEec--ccceee
Confidence 45667888888864 456899999987 444444333333 45778885 455666676 789999
Q ss_pred EEcCCCcee-ccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEE
Q 043172 511 IHIPSYNVF-SNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYK 557 (564)
Q Consensus 511 wdl~s~~~~-~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~ 557 (564)
.|..+.... ............+.++++|++|..||.|..+|.|.+|.
T Consensus 293 vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 293 VDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 884322111 00000111113489999999999999999999999997
No 306
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.75 E-value=9e-08 Score=88.82 Aligned_cols=159 Identities=14% Similarity=0.202 Sum_probs=101.7
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEe-----CCCeEEEEEC
Q 043172 261 STGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAG-----RRKFFYSLDL 335 (564)
Q Consensus 261 h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~-----~dg~i~iwdl 335 (564)
|+.+-.+-+.+-.++.+++++.||.+.+++.+. .......+......-.+.++...++.|.+++ .-+.+++|++
T Consensus 88 ~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~-~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~ 166 (319)
T KOG4714|consen 88 NSEIDPNDACTMTDNRVCIGYADGSLAVFSTDK-DLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTL 166 (319)
T ss_pred cCCCCCcccccccCCceEecCCCceEEEEechH-HHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecc
Confidence 444444444445567899999999999998763 1111111111111112233334555555543 2245667776
Q ss_pred CCCceeeeccccccCCcceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEEEEee--ecCcEEEEEEec-CCCEEEEEe
Q 043172 336 VKAKADKIGPLVGREEKSLEFFEVSPDS-SVIAFVGNEGYILLVSSKTKELIGTLK--MNGTVRSLAFAD-DGKQLLSSG 411 (564)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~v~~~~~spdg-~~la~~~~dg~I~lwd~~t~~~~~~~~--~~~~V~~l~~sp-dg~~l~s~s 411 (564)
...+..... ......|.+++-+|.. +++++|+.+|.+-+||++.......+- |...|..+-|+| ++..|++++
T Consensus 167 ~p~~t~~~~---~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~s 243 (319)
T KOG4714|consen 167 DPIKTLIPS---KKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCS 243 (319)
T ss_pred ccccccccc---ccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEec
Confidence 644332111 1112358889999964 566777789999999999875544433 899999999999 678999999
Q ss_pred CCCeEEEEECCC
Q 043172 412 GDGQVYHWDLRT 423 (564)
Q Consensus 412 ~dg~V~lwD~~~ 423 (564)
.||.+..||..+
T Consensus 244 edGslw~wdas~ 255 (319)
T KOG4714|consen 244 EDGSLWHWDAST 255 (319)
T ss_pred CCCcEEEEcCCC
Confidence 999999999875
No 307
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.74 E-value=2.1e-05 Score=79.19 Aligned_cols=284 Identities=12% Similarity=0.085 Sum_probs=139.1
Q ss_pred eEEEEcCCCCEEEE-EeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeec
Q 043172 266 NSVQFHRNAQLLLV-AGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIG 344 (564)
Q Consensus 266 ~~l~fspdg~~l~s-~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~ 344 (564)
+.=+|.++|+.|+. +..+|.-.+|-++-.+....+...+.........++|+++.++.......+...|+.+.+...+.
T Consensus 39 ~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy 118 (386)
T PF14583_consen 39 YQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVY 118 (386)
T ss_dssp TS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEE
T ss_pred cCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEE
Confidence 33467888865554 44577777777765555555544443333445677898899887766778999999998876665
Q ss_pred cccccCCcceEEEEE--cCCCCEEEEEeC----------------------CCeEEEEECCCCcEEEEeeecCcEEEEEE
Q 043172 345 PLVGREEKSLEFFEV--SPDSSVIAFVGN----------------------EGYILLVSSKTKELIGTLKMNGTVRSLAF 400 (564)
Q Consensus 345 ~~~~~~~~~v~~~~~--spdg~~la~~~~----------------------dg~I~lwd~~t~~~~~~~~~~~~V~~l~~ 400 (564)
.++.. .+....| +.++..++..-. .+.|...|+.+|+....+.....+..+.|
T Consensus 119 ~~p~~---~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~f 195 (386)
T PF14583_consen 119 EVPDD---WKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQF 195 (386)
T ss_dssp E--TT---EEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEE
T ss_pred ECCcc---cccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCccc
Confidence 55432 2323334 445665543211 24577889999998777777888999999
Q ss_pred ecCC-CEEEEEeC---CC-eEEEEECCC-CceeEEEeec-CCcceEEEEECCCCCEEEEEe-----CCCcEEEEeCCccc
Q 043172 401 ADDG-KQLLSSGG---DG-QVYHWDLRT-RTCIHRAVDE-GCINGTALCTSPDGTFFAAGS-----DSGIVNVYNRQEFL 468 (564)
Q Consensus 401 spdg-~~l~s~s~---dg-~V~lwD~~~-~~~~~~~~~~-~~~~i~~l~~sp~g~~lasgs-----~dg~V~iwd~~~~~ 468 (564)
+|.. ..|+.|-. +. .-+||-+++ +.....+... ....+..=-|.|+|..|..-+ .+..|.-++..+.
T Consensus 196 sP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~- 274 (386)
T PF14583_consen 196 SPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTG- 274 (386)
T ss_dssp ETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--
T ss_pred CCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCC-
Confidence 9954 45555432 11 124454443 2223333222 222344445889998655432 2335666777764
Q ss_pred CCcceeeEEccccccceeEEEEcCCCcEEEEEecCC--------------CCeEEEEEcCCCceec------cCCCCCCC
Q 043172 469 GGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMK--------------KNSLKLIHIPSYNVFS------NWPPANRN 528 (564)
Q Consensus 469 ~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~--------------d~~I~lwdl~s~~~~~------~~~~~~~~ 528 (564)
.... +. ...+..++.-++||++++-=+.+. +--|+++++..+.... .|....++
T Consensus 275 ----~~~~-~~-~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~ 348 (386)
T PF14583_consen 275 ----ERRR-LM-EMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGD 348 (386)
T ss_dssp -----EEE-EE-EE-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTB
T ss_pred ----CceE-EE-eCCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCC
Confidence 2221 21 122456777789999876433311 1256678877654321 12221111
Q ss_pred CC-CcEEEEEeCCCCEEE-EEcCCCeEEEEEcC
Q 043172 529 LQ-YPRCLDFSPGGGFMA-VGNAAGKVFLYKLN 559 (564)
Q Consensus 529 ~~-~V~~l~fspdg~~La-sgs~dG~V~lw~l~ 559 (564)
.. .=....|||||++++ .++..|...||-+.
T Consensus 349 ~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 349 RQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp SSTT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred CccCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence 10 113579999999876 55577887777543
No 308
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.73 E-value=1.7e-05 Score=83.02 Aligned_cols=267 Identities=12% Similarity=0.080 Sum_probs=153.5
Q ss_pred CCEEEEEeCCCcEEEEEecCCCCceeEEEEeCC--cC-------eEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeec
Q 043172 274 AQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLED--CP-------VRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIG 344 (564)
Q Consensus 274 g~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~--~~-------I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~ 344 (564)
+..+++++.++.|.-+|..++ ..+-...... .. .......-.+..+++++.++.++.+|..+|+..-..
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG--~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~ 146 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTG--KEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQT 146 (394)
T ss_pred CCEEEEECCCCeEEEEECCCC--cEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccc
Confidence 556777777787777776533 2332222111 00 000000114567888888999999999999874433
Q ss_pred cccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeeecCcEEEE--EEec--CCCEEEEEeCCCeEEEEE
Q 043172 345 PLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLKMNGTVRSL--AFAD--DGKQLLSSGGDGQVYHWD 420 (564)
Q Consensus 345 ~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~~~~~V~~l--~~sp--dg~~l~s~s~dg~V~lwD 420 (564)
.+.+.. .....+ .+..++++..+|.|..+|..+|+.+..+....+...+ .-+| .+..++.++.+|.++.+|
T Consensus 147 ~~~~~~---~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d 221 (394)
T PRK11138 147 KVAGEA---LSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVL 221 (394)
T ss_pred cCCCce---ecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEE
Confidence 332211 111111 2456777778899999999999998877633221100 0112 133577778899999999
Q ss_pred CCCCceeEEEeecCCc---c---eEEEEECC--CCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcC
Q 043172 421 LRTRTCIHRAVDEGCI---N---GTALCTSP--DGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNN 492 (564)
Q Consensus 421 ~~~~~~~~~~~~~~~~---~---i~~l~~sp--~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fsp 492 (564)
..+++.+......... . ...+..+| .+..+++++.+|.+..+|..++ +.+..... .....+. .
T Consensus 222 ~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG-----~~~W~~~~--~~~~~~~--~ 292 (394)
T PRK11138 222 MEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSG-----QIVWKREY--GSVNDFA--V 292 (394)
T ss_pred ccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCC-----CEEEeecC--CCccCcE--E
Confidence 9998876544321110 0 00111122 2456777788999999999886 44433321 1111222 2
Q ss_pred CCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCCCC
Q 043172 493 DAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNHYH 562 (564)
Q Consensus 493 dg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~~~ 562 (564)
.+..|++++. ++.|..++..+++..-..+.... ....+..+ .+.+|++++.+|.|++.+..+++
T Consensus 293 ~~~~vy~~~~--~g~l~ald~~tG~~~W~~~~~~~--~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~ 356 (394)
T PRK11138 293 DGGRIYLVDQ--NDRVYALDTRGGVELWSQSDLLH--RLLTAPVL--YNGYLVVGDSEGYLHWINREDGR 356 (394)
T ss_pred ECCEEEEEcC--CCeEEEEECCCCcEEEcccccCC--CcccCCEE--ECCEEEEEeCCCEEEEEECCCCC
Confidence 4556777776 89999999998876433222111 11222222 24677888889999888876653
No 309
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.72 E-value=1.6e-05 Score=77.79 Aligned_cols=224 Identities=14% Similarity=0.148 Sum_probs=144.0
Q ss_pred CeeEEEEcC-CCCEEEEEeCCCc-EEEEEecCCCCceeEEEEeCCcCe--EEEEEeeCCCEEEEEe-----CCCeEEEEE
Q 043172 264 PINSVQFHR-NAQLLLVAGLDRR-LRFFQIDGKRNTKIQSIFLEDCPV--RKASFLPDGSQAIIAG-----RRKFFYSLD 334 (564)
Q Consensus 264 ~V~~l~fsp-dg~~l~s~s~dg~-I~lwd~~~~~~~~~~~~~~~~~~I--~~l~fspdg~~l~s~~-----~dg~i~iwd 334 (564)
....++.+| .+..++.+-.-|+ ..+||..+.. ..+.+....+.- -..+||++|++|++.- ..|.|-|||
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~--~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd 83 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQ--LLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYD 83 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCc--eeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEE
Confidence 345788899 5566677766554 5678876443 444444333222 1467999999999873 468999999
Q ss_pred CCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeC------------------CCeEEEEECCCCcEEEEee-----e
Q 043172 335 LVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGN------------------EGYILLVSSKTKELIGTLK-----M 391 (564)
Q Consensus 335 l~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~------------------dg~I~lwd~~t~~~~~~~~-----~ 391 (564)
.. ....++..+..+.- ....+.+.|+|..|+++.- +..+.+.|..+|+.+.... |
T Consensus 84 ~~-~~~~ri~E~~s~GI-GPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~ 161 (305)
T PF07433_consen 84 AA-RGYRRIGEFPSHGI-GPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLH 161 (305)
T ss_pred Cc-CCcEEEeEecCCCc-ChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccc
Confidence 98 33444555554433 2456789999988877632 1356677888998887744 5
Q ss_pred cCcEEEEEEecCCCEEEEEeCCC-------eEEEEECCCCceeEEEeec------CCcceEEEEECCCCCEEEEEe-CCC
Q 043172 392 NGTVRSLAFADDGKQLLSSGGDG-------QVYHWDLRTRTCIHRAVDE------GCINGTALCTSPDGTFFAAGS-DSG 457 (564)
Q Consensus 392 ~~~V~~l~~spdg~~l~s~s~dg-------~V~lwD~~~~~~~~~~~~~------~~~~i~~l~~sp~g~~lasgs-~dg 457 (564)
.-.|..+++.++|..++..-..| .|.+++... .+..+... -...+-+|++++++.++++.| ..|
T Consensus 162 ~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg 239 (305)
T PF07433_consen 162 QLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGG 239 (305)
T ss_pred ccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCC
Confidence 56899999999997666554333 244444332 22222211 122567999999998886665 577
Q ss_pred cEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEe
Q 043172 458 IVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICS 501 (564)
Q Consensus 458 ~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s 501 (564)
.+.+||..++ ..+.... -..+..++-.+++ ++++.+
T Consensus 240 ~~~~~d~~tg-----~~~~~~~--l~D~cGva~~~~~-f~~ssG 275 (305)
T PF07433_consen 240 RVAVWDAATG-----RLLGSVP--LPDACGVAPTDDG-FLVSSG 275 (305)
T ss_pred EEEEEECCCC-----CEeeccc--cCceeeeeecCCc-eEEeCC
Confidence 8999999886 5554443 2445667766666 454433
No 310
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.70 E-value=1.2e-08 Score=108.28 Aligned_cols=220 Identities=11% Similarity=0.147 Sum_probs=159.7
Q ss_pred eeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCC--eE
Q 043172 298 KIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEG--YI 375 (564)
Q Consensus 298 ~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg--~I 375 (564)
...+++.+....+|++|+-+.++|++|+..|.|++|++.+|.... ...+|.. .|+.+.-+.+|..+++.+... ..
T Consensus 1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~--s~ncH~S-avT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE--SVNCHQS-AVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc--ccccccc-ccccccccCCcceeeeeccccCchH
Confidence 445566778889999999999999999999999999999998643 3555554 789999999998877765433 47
Q ss_pred EEEECCC-CcEEEEeeecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeec---CCcceEEEEECCCCCEEE
Q 043172 376 LLVSSKT-KELIGTLKMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDE---GCINGTALCTSPDGTFFA 451 (564)
Q Consensus 376 ~lwd~~t-~~~~~~~~~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~---~~~~i~~l~~sp~g~~la 451 (564)
.+|++.+ +...+++. .-.++.|+.....-+.|.......+||+.++..+.++... ....-.+..|+|+..+++
T Consensus 1170 aLW~~~s~~~~~Hsf~---ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFD---EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred HHhccccccCcccccc---ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence 7898864 44444443 3456778765444444555567899999998877664321 222235778999988776
Q ss_pred EEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCC
Q 043172 452 AGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQY 531 (564)
Q Consensus 452 sgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~ 531 (564)
.||. +||++.. ..++.|...+..+ .=.|+|.|.-+++-+. |||+++...+...|...
T Consensus 1247 ---ndGv--LWDvR~~-----~aIh~FD~ft~~~-~G~FHP~g~eVIINSE-------IwD~RTF~lLh~VP~Ld----- 1303 (1516)
T KOG1832|consen 1247 ---NDGV--LWDVRIP-----EAIHRFDQFTDYG-GGGFHPSGNEVIINSE-------IWDMRTFKLLHSVPSLD----- 1303 (1516)
T ss_pred ---eCce--eeeeccH-----HHHhhhhhheecc-cccccCCCceEEeech-------hhhhHHHHHHhcCcccc-----
Confidence 4554 6999976 7777777655333 3469999999998775 89999999888776653
Q ss_pred cEEEEEeCCCCEEEE
Q 043172 532 PRCLDFSPGGGFMAV 546 (564)
Q Consensus 532 V~~l~fspdg~~Las 546 (564)
-+.+.|...|..++.
T Consensus 1304 qc~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1304 QCAVTFNSTGDVMYA 1318 (1516)
T ss_pred ceEEEeccCccchhh
Confidence 357788888876653
No 311
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.70 E-value=6.3e-06 Score=86.30 Aligned_cols=260 Identities=9% Similarity=0.053 Sum_probs=153.5
Q ss_pred CCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEE-EEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCc
Q 043172 274 AQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRK-ASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEK 352 (564)
Q Consensus 274 g~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~-l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~ 352 (564)
+..++.++.++.+.-+|..+++ .+-...... .+.+ ... .+..++++..++.++.+|..+|+..-.........
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~--~~W~~~~~~-~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~- 193 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGE--VAWQTKVAG-EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSL- 193 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCC--CcccccCCC-ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcc-
Confidence 4567777788988888876433 333332221 2221 111 24567777888999999999998743322211100
Q ss_pred ceEEEEEcC--CCCEEEEEeCCCeEEEEECCCCcEEEEeeecCc--------EEEEEEec--CCCEEEEEeCCCeEEEEE
Q 043172 353 SLEFFEVSP--DSSVIAFVGNEGYILLVSSKTKELIGTLKMNGT--------VRSLAFAD--DGKQLLSSGGDGQVYHWD 420 (564)
Q Consensus 353 ~v~~~~~sp--dg~~la~~~~dg~I~lwd~~t~~~~~~~~~~~~--------V~~l~~sp--dg~~l~s~s~dg~V~lwD 420 (564)
.+.. .-+| .+..+++++.+|.+..+|..+++.+.......+ ...+..+| .+..+++++.+|.++.+|
T Consensus 194 ~~~~-~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald 272 (394)
T PRK11138 194 TLRG-ESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALD 272 (394)
T ss_pred cccC-CCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEE
Confidence 0000 0111 134567777889999999999987665542110 11111222 345677788899999999
Q ss_pred CCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccc-cceeEEEEcCCCcEEEE
Q 043172 421 LRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLT-TKVDFMKFNNDAQILAI 499 (564)
Q Consensus 421 ~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~-~~I~~l~fspdg~~La~ 499 (564)
+.+++.+-+...... ..+.. .+..|++++.+|.|..+|..++ +.+....... ....+... .+..|++
T Consensus 273 ~~tG~~~W~~~~~~~---~~~~~--~~~~vy~~~~~g~l~ald~~tG-----~~~W~~~~~~~~~~~sp~v--~~g~l~v 340 (394)
T PRK11138 273 LRSGQIVWKREYGSV---NDFAV--DGGRIYLVDQNDRVYALDTRGG-----VELWSQSDLLHRLLTAPVL--YNGYLVV 340 (394)
T ss_pred CCCCCEEEeecCCCc---cCcEE--ECCEEEEEcCCCeEEEEECCCC-----cEEEcccccCCCcccCCEE--ECCEEEE
Confidence 999987654432211 11222 4567778888999999999876 4443322111 11222222 2456777
Q ss_pred EecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEc
Q 043172 500 CSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKL 558 (564)
Q Consensus 500 ~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l 558 (564)
++. +|.|++++..+++.+........ .......+ .+..|++++.+|.|+.+++
T Consensus 341 ~~~--~G~l~~ld~~tG~~~~~~~~~~~--~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 341 GDS--EGYLHWINREDGRFVAQQKVDSS--GFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred EeC--CCEEEEEECCCCCEEEEEEcCCC--cceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 777 89999999999988765543211 11112222 2457888999999998875
No 312
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.65 E-value=9.2e-06 Score=90.19 Aligned_cols=202 Identities=15% Similarity=0.209 Sum_probs=139.6
Q ss_pred cceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEEeCCCeEEEEEC----CCCcee
Q 043172 352 KSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSGGDGQVYHWDL----RTRTCI 427 (564)
Q Consensus 352 ~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~----~~~~~~ 427 (564)
..|.++.|..+++.++++...|.|.+.|..+......-...+.|.+++|+||+..++..+..+++.+-+- -.-+.+
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L 148 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPL 148 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcccc
Confidence 3688999999999999999999999999988877655557889999999999999999988888776543 111111
Q ss_pred -------------------EEEeec--------------------CCcceEEEEECCCCCEEEEE-----eCCCcEEEEe
Q 043172 428 -------------------HRAVDE--------------------GCINGTALCTSPDGTFFAAG-----SDSGIVNVYN 463 (564)
Q Consensus 428 -------------------~~~~~~--------------------~~~~i~~l~~sp~g~~lasg-----s~dg~V~iwd 463 (564)
..|.+. ....-++|+|-.+|.++|+. .....|+|||
T Consensus 149 ~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~d 228 (1265)
T KOG1920|consen 149 DADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYD 228 (1265)
T ss_pred ccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEec
Confidence 111100 00012468999999999983 3336899999
Q ss_pred CCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecC-CCCeEEEEEcCCC---ceeccCCCCCCCCCCcEEEEEeC
Q 043172 464 RQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTM-KKNSLKLIHIPSY---NVFSNWPPANRNLQYPRCLDFSP 539 (564)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~-~d~~I~lwdl~s~---~~~~~~~~~~~~~~~V~~l~fsp 539 (564)
.... .-.+-....+.-.+++|-|.|.++++-... .++.|.+|.-... .....+|... ..|..++|+.
T Consensus 229 rEg~------Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de---~~ve~L~Wns 299 (1265)
T KOG1920|consen 229 REGA------LNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDE---KEVEELAWNS 299 (1265)
T ss_pred ccch------hhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccc---cchheeeecC
Confidence 8832 222222223334579999999998875432 2556888875432 2222233332 3389999999
Q ss_pred CCCEEEE---EcCCCeEEEEEcCCCC
Q 043172 540 GGGFMAV---GNAAGKVFLYKLNHYH 562 (564)
Q Consensus 540 dg~~Las---gs~dG~V~lw~l~~~~ 562 (564)
++..||+ ......|++|-+.+|.
T Consensus 300 ~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 300 NSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred CCCceeeeecccccceEEEEEecCeE
Confidence 9999997 5555569999998874
No 313
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=6.2e-06 Score=88.42 Aligned_cols=223 Identities=16% Similarity=0.150 Sum_probs=144.4
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcC-eEEEEEeeCCCEEEEEeCCC-----eEEEEECCC
Q 043172 264 PINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCP-VRKASFLPDGSQAIIAGRRK-----FFYSLDLVK 337 (564)
Q Consensus 264 ~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~-I~~l~fspdg~~l~s~~~dg-----~i~iwdl~~ 337 (564)
.|+| |++.+..++.|+.+|.|.+.+-. ...++.++.+... |..+....+.++|++.+.|+ .++||+++.
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~s---~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek 101 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNSS---FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEK 101 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEeccc---ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccc
Confidence 4444 67888999999999998887543 3344667766666 44444334446777776543 689999875
Q ss_pred C------cee---eecccc-ccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECC---CCcEEEEee--ecCcEEEEEEec
Q 043172 338 A------KAD---KIGPLV-GREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSK---TKELIGTLK--MNGTVRSLAFAD 402 (564)
Q Consensus 338 ~------~~~---~~~~~~-~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~---t~~~~~~~~--~~~~V~~l~~sp 402 (564)
- .+. ++.+.. +....++.+++++.+-+.+|+|-.+|.|..+.-. ..-....+. ...+|+++++..
T Consensus 102 ~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~ 181 (933)
T KOG2114|consen 102 VDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRS 181 (933)
T ss_pred cCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEec
Confidence 3 222 122211 1234578999999999999999999999998532 111111222 467999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEcc-cc
Q 043172 403 DGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIE-NL 481 (564)
Q Consensus 403 dg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~-~~ 481 (564)
++..++.+..-..|.+|.+....+.....+.++....|..+++....|++++.. .|.+|+.... ++..++. ++
T Consensus 182 d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e-~l~fY~sd~~-----~~cfaf~~g~ 255 (933)
T KOG2114|consen 182 DGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSE-FLYFYDSDGR-----GPCFAFEVGE 255 (933)
T ss_pred CCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCc-eEEEEcCCCc-----ceeeeecCCC
Confidence 887633333345799999985554455556667778888888765545555444 6899998865 6777776 55
Q ss_pred ccceeEEEEcCCCcEEEEE
Q 043172 482 TTKVDFMKFNNDAQILAIC 500 (564)
Q Consensus 482 ~~~I~~l~fspdg~~La~~ 500 (564)
...+.. ..-|.+|++.
T Consensus 256 kk~~~~---~~~g~~L~v~ 271 (933)
T KOG2114|consen 256 KKEMLV---FSFGLLLCVT 271 (933)
T ss_pred eEEEEE---EecCEEEEEE
Confidence 544332 2235555543
No 314
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=7.2e-07 Score=88.75 Aligned_cols=204 Identities=18% Similarity=0.189 Sum_probs=141.8
Q ss_pred CCCCCCeeEEEEcCCCCEEEEEeC-CCcEEEEEecCCCCceeEEEEeCCcCeEEEEEe-eCC---CEEEEE-eCCCeEEE
Q 043172 259 ESSTGPINSVQFHRNAQLLLVAGL-DRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFL-PDG---SQAIIA-GRRKFFYS 332 (564)
Q Consensus 259 ~~h~~~V~~l~fspdg~~l~s~s~-dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fs-pdg---~~l~s~-~~dg~i~i 332 (564)
..|-+.|.+++.+-++.++.|.+. |..+++||+..-... ..+....-| ..+.|. ..| ..|+++ -.++.+.+
T Consensus 50 raHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~Dmi--nmiKL~~lP-g~a~wv~skGd~~s~IAVs~~~sg~i~V 126 (558)
T KOG0882|consen 50 RAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMI--NMIKLVDLP-GFAEWVTSKGDKISLIAVSLFKSGKIFV 126 (558)
T ss_pred HHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchh--hhcccccCC-CceEEecCCCCeeeeEEeecccCCCcEE
Confidence 458899999999999999999777 999999999743222 111111111 122332 233 133333 36788999
Q ss_pred EECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCC------CcEEEEee----------ecCcEE
Q 043172 333 LDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKT------KELIGTLK----------MNGTVR 396 (564)
Q Consensus 333 wdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t------~~~~~~~~----------~~~~V~ 396 (564)
+|-....+... -+.+.+..+|.++.++|.+..+++....|.|.-|.... ......++ ......
T Consensus 127 vD~~~d~~q~~-~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pt 205 (558)
T KOG0882|consen 127 VDGFGDFCQDG-YFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPT 205 (558)
T ss_pred ECCcCCcCccc-eecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCcc
Confidence 99776554322 23344445899999999999999998899999999872 11222222 245678
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEe--------------------------------ecCCcceEEEEEC
Q 043172 397 SLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAV--------------------------------DEGCINGTALCTS 444 (564)
Q Consensus 397 ~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~--------------------------------~~~~~~i~~l~~s 444 (564)
++.|+|+|..+.+-+.|..|++++.++++.++.+. .++....+.++|.
T Consensus 206 s~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fd 285 (558)
T KOG0882|consen 206 SFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFD 285 (558)
T ss_pred ceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEc
Confidence 99999999999999999999999999987654332 1223344677888
Q ss_pred CCCCEEEEEeCCCcEEEEeCCcc
Q 043172 445 PDGTFFAAGSDSGIVNVYNRQEF 467 (564)
Q Consensus 445 p~g~~lasgs~dg~V~iwd~~~~ 467 (564)
..|++|+.|+-=| |+|.++.++
T Consensus 286 es~~flly~t~~g-ikvin~~tn 307 (558)
T KOG0882|consen 286 ESGNFLLYGTILG-IKVINLDTN 307 (558)
T ss_pred CCCCEEEeeccee-EEEEEeecC
Confidence 8899999887654 677777665
No 315
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.60 E-value=4.5e-06 Score=87.10 Aligned_cols=190 Identities=23% Similarity=0.284 Sum_probs=128.1
Q ss_pred EEEeCCcCeEEEEEeeCCCEEEEEe---CC-CeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeC-CC--
Q 043172 301 SIFLEDCPVRKASFLPDGSQAIIAG---RR-KFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGN-EG-- 373 (564)
Q Consensus 301 ~~~~~~~~I~~l~fspdg~~l~s~~---~d-g~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~-dg-- 373 (564)
.+......+..-+|+|++..++... .. ..++++++.++....+..+.++.. ...|+|||+.|+.+.. +|
T Consensus 187 ~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~----~P~fspDG~~l~f~~~rdg~~ 262 (425)
T COG0823 187 KLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNG----APAFSPDGSKLAFSSSRDGSP 262 (425)
T ss_pred EecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccC----CccCCCCCCEEEEEECCCCCc
Confidence 3344456777888999998876653 33 579999999998877766665543 5789999999887764 44
Q ss_pred eEEEEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEeC-CC--eEEEEECCCCceeEEEeecCCcceEEEEECCCCCE
Q 043172 374 YILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGG-DG--QVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTF 449 (564)
Q Consensus 374 ~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~-dg--~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~ 449 (564)
.|+++|+.+++... +. ..+.-+.-.|+|+|+.|+..+. .| .|+++++..... .++....... ..-.|+|+|++
T Consensus 263 ~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~-~~p~~SpdG~~ 339 (425)
T COG0823 263 DIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGN-SNPVWSPDGDK 339 (425)
T ss_pred cEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCC-cCccCCCCCCE
Confidence 57888888887444 44 3344457789999998887765 33 577778776554 3444333322 26789999999
Q ss_pred EEEEeCC-Cc--EEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecC
Q 043172 450 FAAGSDS-GI--VNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTM 503 (564)
Q Consensus 450 lasgs~d-g~--V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~ 503 (564)
|+..+.. |. |.++++... .-+..+ ..........|.|+|..+...+..
T Consensus 340 i~~~~~~~g~~~i~~~~~~~~-----~~~~~l-t~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 340 IVFESSSGGQWDIDKNDLASG-----GKIRIL-TSTYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred EEEEeccCCceeeEEeccCCC-----CcEEEc-cccccCCCCCcCCCCceEEEeccC
Confidence 8877743 44 666666654 113222 234445567788999988877763
No 316
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.60 E-value=1.8e-07 Score=90.01 Aligned_cols=166 Identities=16% Similarity=0.202 Sum_probs=121.8
Q ss_pred EEEeCCCeEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCC-----ceeEEEeecCCcceEEE
Q 043172 367 AFVGNEGYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTR-----TCIHRAVDEGCINGTAL 441 (564)
Q Consensus 367 a~~~~dg~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~-----~~~~~~~~~~~~~i~~l 441 (564)
++.|.+-.|.+.++.++... .|...+.|.++.|...+++++.|..+|.|..+|++.+ .+.+.+.+ ...++++
T Consensus 228 fs~G~sqqv~L~nvetg~~q-sf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh--~Ssvtsl 304 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQ-SFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYH--DSSVTSL 304 (425)
T ss_pred ecccccceeEEEEeeccccc-ccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEc--Ccchhhh
Confidence 55666788999999887543 3446778999999998999999999999999999875 34444443 3356777
Q ss_pred EECC-CCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEE--cCCCcEEEEEecCCCCeEEEEEcCCCce
Q 043172 442 CTSP-DGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKF--NNDAQILAICSTMKKNSLKLIHIPSYNV 518 (564)
Q Consensus 442 ~~sp-~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~f--spdg~~La~~s~~~d~~I~lwdl~s~~~ 518 (564)
..-. ++++|++.+.+|.|.+||++.. ...+-+.+..+|...-.-+-+ .+....+++++. |...|||.+.++..
T Consensus 305 q~Lq~s~q~LmaS~M~gkikLyD~R~~--K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~Gd--DcytRiWsl~~ghL 380 (425)
T KOG2695|consen 305 QILQFSQQKLMASDMTGKIKLYDLRAT--KCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGD--DCYTRIWSLDSGHL 380 (425)
T ss_pred hhhccccceEeeccCcCceeEeeehhh--hcccceeeeecccccccccccccccccceEEEccC--eeEEEEEecccCce
Confidence 6655 6789999999999999999976 112237788887654443333 445566666665 89999999999999
Q ss_pred eccCCCCCCCC-CCcEEEEEeC
Q 043172 519 FSNWPPANRNL-QYPRCLDFSP 539 (564)
Q Consensus 519 ~~~~~~~~~~~-~~V~~l~fsp 539 (564)
+..+|...... ..+.+++|..
T Consensus 381 l~tipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 381 LCTIPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred eeccCCCCccccccccceehhc
Confidence 98887664322 3567777754
No 317
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.60 E-value=1.2e-06 Score=83.33 Aligned_cols=207 Identities=13% Similarity=0.183 Sum_probs=133.3
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----EEEEee-------------ecCcEEEEEEecCC--CEEEEEeC
Q 043172 353 SLEFFEVSPDSSVIAFVGNEGYILLVSSKTKE-----LIGTLK-------------MNGTVRSLAFADDG--KQLLSSGG 412 (564)
Q Consensus 353 ~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~-----~~~~~~-------------~~~~V~~l~~spdg--~~l~s~s~ 412 (564)
.|+.+.|...|.||++|...|.|.+|.-.... ....++ ....|..+.|..++ ..++..+.
T Consensus 28 ~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstN 107 (460)
T COG5170 28 KITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTN 107 (460)
T ss_pred eeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecC
Confidence 58899999999999999999999999754322 111111 23468889887654 35666678
Q ss_pred CCeEEEEECCCCcee------------------------------------------EEEeecCCcceEEEEECCCCCEE
Q 043172 413 DGQVYHWDLRTRTCI------------------------------------------HRAVDEGCINGTALCTSPDGTFF 450 (564)
Q Consensus 413 dg~V~lwD~~~~~~~------------------------------------------~~~~~~~~~~i~~l~~sp~g~~l 450 (564)
|.+|++|.+...... +.+...|...+.++.|..+...+
T Consensus 108 dktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~ 187 (460)
T COG5170 108 DKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETL 187 (460)
T ss_pred CceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchhee
Confidence 999999998643110 00112244456788888777666
Q ss_pred EEEeCCCcEEEEeCCcccCCcceeeEEcccc-----ccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceec----c
Q 043172 451 AAGSDSGIVNVYNRQEFLGGKRKPIKTIENL-----TTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFS----N 521 (564)
Q Consensus 451 asgs~dg~V~iwd~~~~~~~~~~~~~~~~~~-----~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~----~ 521 (564)
+++ .+=.|++|++... ...-.+..++.| +.-|++..|+|....+++-|.. .|.|+|-|++....-. .
T Consensus 188 lSa-DdLrINLWnl~i~--D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsS-kG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 188 LSA-DDLRINLWNLEII--DGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSS-KGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred eec-cceeeeecccccc--CCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecC-CCcEEehhhhhhhhccCchhh
Confidence 654 5668999998754 111223333333 4568899999975444433332 7999999997322110 0
Q ss_pred CCC---------CCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCCCCCC
Q 043172 522 WPP---------ANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNHYHHA 564 (564)
Q Consensus 522 ~~~---------~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~~~~~ 564 (564)
+.. ...-...|..+.|+++|+|+++-+. -+|.|||++.-++|
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~p 314 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNP 314 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCC
Confidence 000 0112346889999999999987654 57999999877664
No 318
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.59 E-value=6e-05 Score=78.44 Aligned_cols=118 Identities=10% Similarity=0.159 Sum_probs=80.5
Q ss_pred eeecCcEEEEEEec-CCCEEEEE----eCCCe----EEEEECCCCc--eeEEEeecCCcceEEEEECCCCCEEEEEeCCC
Q 043172 389 LKMNGTVRSLAFAD-DGKQLLSS----GGDGQ----VYHWDLRTRT--CIHRAVDEGCINGTALCTSPDGTFFAAGSDSG 457 (564)
Q Consensus 389 ~~~~~~V~~l~~sp-dg~~l~s~----s~dg~----V~lwD~~~~~--~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg 457 (564)
+..+....++.|+- ++..+.+. +.+|. -.+|++...+ ++......-...+.+++++|+...++.|+.||
T Consensus 202 irTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~Dg 281 (545)
T PF11768_consen 202 IRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDG 281 (545)
T ss_pred EEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCC
Confidence 33444456666665 33444443 22332 3455555433 22222334445688999999999999999999
Q ss_pred cEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCC
Q 043172 458 IVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPS 515 (564)
Q Consensus 458 ~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s 515 (564)
.|.+||.... +.......-.++.++|+|+|.++++|+. .|.+.+||+.-
T Consensus 282 SiiLyD~~~~-------~t~~~ka~~~P~~iaWHp~gai~~V~s~--qGelQ~FD~AL 330 (545)
T PF11768_consen 282 SIILYDTTRG-------VTLLAKAEFIPTLIAWHPDGAIFVVGSE--QGELQCFDMAL 330 (545)
T ss_pred eEEEEEcCCC-------eeeeeeecccceEEEEcCCCcEEEEEcC--CceEEEEEeec
Confidence 9999998764 2233334566789999999999999998 89999999864
No 319
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.59 E-value=6.5e-05 Score=70.27 Aligned_cols=267 Identities=14% Similarity=0.185 Sum_probs=140.6
Q ss_pred CCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCc
Q 043172 273 NAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEK 352 (564)
Q Consensus 273 dg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~ 352 (564)
-|.+++.|...|.+++.++.++ ..+..+.....-=......+++..+..++.|++++..|..+..+.......|.
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tG--s~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~--- 136 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTG--SQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGG--- 136 (354)
T ss_pred ECCEEEEEEccCcEEEEEecch--hheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCc---
Confidence 4677999999999999888744 34444433221111233456889999999999999999998776543333222
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--EEEEeeecCcEEE--EEEecCCCEEEEEeCCCeEEEEECCCCceeE
Q 043172 353 SLEFFEVSPDSSVIAFVGNEGYILLVSSKTKE--LIGTLKMNGTVRS--LAFADDGKQLLSSGGDGQVYHWDLRTRTCIH 428 (564)
Q Consensus 353 ~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~--~~~~~~~~~~V~~--l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~ 428 (564)
...+-++.|-...|+++...|.|.-...++.. .+......++|.+ ++. +..+..+.-||.+.-++ ..++++.
T Consensus 137 ~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~splcv---~~sv~i~~VdG~l~~f~-~sG~qvw 212 (354)
T KOG4649|consen 137 TFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAATRFGPIFASPLCV---GSSVIITTVDGVLTSFD-ESGRQVW 212 (354)
T ss_pred eeccceecCCCceEEEEeccceEEEEccCCCCcceehhhhcCCccccCceec---cceEEEEEeccEEEEEc-CCCcEEE
Confidence 23344556644455555666777666665542 2222222334322 111 33455566677777777 4566665
Q ss_pred EEeecCCcceEEEEEC-CCCCEEEEEeCCCcEE--------EEeCCcccCCcceeeEEccccccceeEEEEc-CC---Cc
Q 043172 429 RAVDEGCINGTALCTS-PDGTFFAAGSDSGIVN--------VYNRQEFLGGKRKPIKTIENLTTKVDFMKFN-ND---AQ 495 (564)
Q Consensus 429 ~~~~~~~~~i~~l~~s-p~g~~lasgs~dg~V~--------iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fs-pd---g~ 495 (564)
++...+.+. ..-+.+ |..+.|..+..+..+. +|..+.+ ...+... ++-....++ |. .+
T Consensus 213 r~~t~GpIf-~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g-----~t~~vy~---~p~l~F~~h~~~~S~~~ 283 (354)
T KOG4649|consen 213 RPATKGPIF-MEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSG-----TTLHVYL---SPKLRFDLHSPGISYPK 283 (354)
T ss_pred eecCCCcee-cccccCCCcceEEEEecCCeEEEeccccceEEEEecCC-----cEEEEEe---CcccceeccCCCCcchh
Confidence 554433321 111222 4434455554443332 3333332 1111100 000011111 11 34
Q ss_pred EEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEE-----e-C--CCCEEEEEcCCCeEEEEEcCCC
Q 043172 496 ILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDF-----S-P--GGGFMAVGNAAGKVFLYKLNHY 561 (564)
Q Consensus 496 ~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~f-----s-p--dg~~Lasgs~dG~V~lw~l~~~ 561 (564)
+|..++. ||.+.|.-+... +.......+..+.+..+.. | | =+..|+.|+.|..|+.||+.+.
T Consensus 284 ll~~~s~--dgkv~il~~~~s--l~~~~s~~g~lq~~~~~el~~eIFsSPvii~grl~igcRDdYv~cldl~~~ 353 (354)
T KOG4649|consen 284 LLRRSSG--DGKVMILMTSKS--LAEISSNGGELQNLEAIELSNEIFSSPVIIDGRLLIGCRDDYVRCLDLDTW 353 (354)
T ss_pred hhhhhcC--CCcEEEEEeccc--ccccccCCCccceEEEeecCcccccCCeEEccEEEEEEccCeEEEEecccc
Confidence 5666676 888887754321 2222333333344444332 2 2 1245778889999999999764
No 320
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.58 E-value=2.2e-07 Score=89.45 Aligned_cols=169 Identities=11% Similarity=0.144 Sum_probs=123.9
Q ss_pred eEEEEeCCcCeEEEEEee--CCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEE
Q 043172 299 IQSIFLEDCPVRKASFLP--DGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYIL 376 (564)
Q Consensus 299 ~~~~~~~~~~I~~l~fsp--dg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~ 376 (564)
..+++.... ..++|+- .|-. ++.|.+-.+-+-++.+|.... +. ....|..+.|...+++++.|+.+|.|.
T Consensus 206 ~~SlQi~~a--~~CawSlni~gyh-fs~G~sqqv~L~nvetg~~qs---f~--sksDVfAlQf~~s~nLv~~GcRngeI~ 277 (425)
T KOG2695|consen 206 LCSLQIPKA--WSCAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQS---FQ--SKSDVFALQFAGSDNLVFNGCRNGEIF 277 (425)
T ss_pred eeeecCCcc--hhhhhhhccceee-ecccccceeEEEEeecccccc---cc--cchhHHHHHhcccCCeeEecccCCcEE
Confidence 344444332 2336663 2333 556667788899999886432 22 223577888888899999999999999
Q ss_pred EEECCCC-----cEEEEeeecCcEEEEEEec-CCCEEEEEeCCCeEEEEECCCCce---eEEEeecCCcc-eEEEEECCC
Q 043172 377 LVSSKTK-----ELIGTLKMNGTVRSLAFAD-DGKQLLSSGGDGQVYHWDLRTRTC---IHRAVDEGCIN-GTALCTSPD 446 (564)
Q Consensus 377 lwd~~t~-----~~~~~~~~~~~V~~l~~sp-dg~~l~s~s~dg~V~lwD~~~~~~---~~~~~~~~~~~-i~~l~~sp~ 446 (564)
.+|++.+ .+...+.|...|+++.... ++.+|++.+.+|.|.+||++--++ +.++..|-... -.-+-+.+.
T Consensus 278 ~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~e 357 (425)
T KOG2695|consen 278 VIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEE 357 (425)
T ss_pred EEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccc
Confidence 9999865 5667777999999998877 788999999999999999998777 77776553211 122334566
Q ss_pred CCEEEEEeCCCcEEEEeCCcccCCcceeeEEccc
Q 043172 447 GTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIEN 480 (564)
Q Consensus 447 g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~ 480 (564)
...++++++|...+||.++.+ ..+.++..
T Consensus 358 eg~I~s~GdDcytRiWsl~~g-----hLl~tipf 386 (425)
T KOG2695|consen 358 EGSIFSVGDDCYTRIWSLDSG-----HLLCTIPF 386 (425)
T ss_pred cceEEEccCeeEEEEEecccC-----ceeeccCC
Confidence 778899999999999999987 77777653
No 321
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=2.6e-06 Score=90.68 Aligned_cols=182 Identities=16% Similarity=0.177 Sum_probs=129.2
Q ss_pred cCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE
Q 043172 307 CPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELI 386 (564)
Q Consensus 307 ~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~ 386 (564)
..++|++++ +++|+.|..+|.|++++....- . ....|.. . ...|.++++|+.||.|.|..+-+.+..
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-~---~~~~~s~--~-----~~~Gey~asCS~DGkv~I~sl~~~~~~ 106 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNP-K---TNFDHSS--S-----ILEGEYVASCSDDGKVVIGSLFTDDEI 106 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCCcc-c---ccccccc--c-----ccCCceEEEecCCCcEEEeeccCCccc
Confidence 456777775 6789999999999999876432 1 1222221 1 557999999999999999999999999
Q ss_pred EEeeecCcEEEEEEecC-----CCEEEEEeCCCeEEEEECCC-CceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEE
Q 043172 387 GTLKMNGTVRSLAFADD-----GKQLLSSGGDGQVYHWDLRT-RTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVN 460 (564)
Q Consensus 387 ~~~~~~~~V~~l~~spd-----g~~l~s~s~dg~V~lwD~~~-~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~ 460 (564)
.++....++.+++++|+ .+.+++||.-| +.++.-+- +.........+..+|.+++| .|+++|-++..| |+
T Consensus 107 ~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWand~G-v~ 182 (846)
T KOG2066|consen 107 TQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWANDDG-VK 182 (846)
T ss_pred eeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEecCCC-cE
Confidence 88888899999999997 57899999888 77765432 11111123345557899998 467898888776 79
Q ss_pred EEeCCcccCCcceeeEEcccc------ccceeEEEEcCCCcEEEEEecCCCCeEEEEEcC
Q 043172 461 VYNRQEFLGGKRKPIKTIENL------TTKVDFMKFNNDAQILAICSTMKKNSLKLIHIP 514 (564)
Q Consensus 461 iwd~~~~~~~~~~~~~~~~~~------~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~ 514 (564)
|||+... +.+..+... ..-..++.|.++.+++ +|= ..+|+|..++
T Consensus 183 vyd~~~~-----~~l~~i~~p~~~~R~e~fpphl~W~~~~~LV-IGW---~d~v~i~~I~ 233 (846)
T KOG2066|consen 183 VYDTPTR-----QRLTNIPPPSQSVRPELFPPHLHWQDEDRLV-IGW---GDSVKICSIK 233 (846)
T ss_pred EEecccc-----ceeeccCCCCCCCCcccCCCceEecCCCeEE-Eec---CCeEEEEEEe
Confidence 9999876 444333322 2233568888776544 443 3588888887
No 322
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=2.9e-06 Score=90.25 Aligned_cols=185 Identities=16% Similarity=0.297 Sum_probs=134.9
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEee
Q 043172 353 SLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVD 432 (564)
Q Consensus 353 ~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~ 432 (564)
.+.|++++ +++|+.|+.+|.|++++....- ...+.|... .-.|.++++|+.||.|.|..+-+.+...++..
T Consensus 41 ~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df 111 (846)
T KOG2066|consen 41 AISCCAVH--DKFFALGTHRGAVYLTTCQGNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDF 111 (846)
T ss_pred HHHHHHhh--cceeeeccccceEEEEecCCcc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEec
Confidence 35566665 6899999999999999865432 222334333 55799999999999999999988877666554
Q ss_pred cCCcceEEEEECCC-----CCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCe
Q 043172 433 EGCINGTALCTSPD-----GTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNS 507 (564)
Q Consensus 433 ~~~~~i~~l~~sp~-----g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~ 507 (564)
+. ++.+++++|+ .+.+++|+.-| +.++..+-. ++..++ .+....++|.++.|. |.++|.++ |-.
T Consensus 112 ~r--piksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wl--gnk~~v-~l~~~eG~I~~i~W~--g~lIAWan---d~G 180 (846)
T KOG2066|consen 112 KR--PIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWL--GNKDSV-VLSEGEGPIHSIKWR--GNLIAWAN---DDG 180 (846)
T ss_pred CC--cceeEEeccchhhhhhhheeecCcce-EEEehhhhh--cCccce-eeecCccceEEEEec--CcEEEEec---CCC
Confidence 33 5789999998 46899999999 878876543 222333 455567899999995 77899888 567
Q ss_pred EEEEEcCCCceeccCCCCCC---CCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q 043172 508 LKLIHIPSYNVFSNWPPANR---NLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLN 559 (564)
Q Consensus 508 I~lwdl~s~~~~~~~~~~~~---~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~ 559 (564)
|++||+.+.+.+.+++.... +......+.|.++.+ |+.| +..+|.|..++
T Consensus 181 v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 181 VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIG-WGDSVKICSIK 233 (846)
T ss_pred cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEe-cCCeEEEEEEe
Confidence 99999999988887766542 223456788988755 4444 44578888876
No 323
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.57 E-value=4.2e-06 Score=86.82 Aligned_cols=158 Identities=14% Similarity=0.133 Sum_probs=104.7
Q ss_pred cEEEEEecCCCCceeEEEEeCCcCeEEEEEee-CCCEEEEE----eCCCe----EEEEECCCCceeeeccccccCCcceE
Q 043172 285 RLRFFQIDGKRNTKIQSIFLEDCPVRKASFLP-DGSQAIIA----GRRKF----FYSLDLVKAKADKIGPLVGREEKSLE 355 (564)
Q Consensus 285 ~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fsp-dg~~l~s~----~~dg~----i~iwdl~~~~~~~~~~~~~~~~~~v~ 355 (564)
.+.++.+.+.....+..+.....| .++.||- +...+.+. +.+|. ..+|++..++..++....-.....+.
T Consensus 185 Nl~L~~~~~~klEvL~yirTE~dP-l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~ 263 (545)
T PF11768_consen 185 NLHLLSCSGGKLEVLSYIRTENDP-LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVI 263 (545)
T ss_pred cEEEEEecCCcEEEEEEEEecCCc-EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcce
Confidence 455565555444444444444444 5778886 45556554 23332 45677776655443222222234689
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCC
Q 043172 356 FFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGC 435 (564)
Q Consensus 356 ~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~ 435 (564)
+++++|+...++.|+.||.|.+||...+.... .+..-.++.++|+|+|..+++|+..|.+.+||+.-......+..+..
T Consensus 264 ~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~-~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~~qLlsEd~ 342 (545)
T PF11768_consen 264 CCARSPSEDKLVLGCEDGSIILYDTTRGVTLL-AKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIKMQLLSEDA 342 (545)
T ss_pred EEecCcccceEEEEecCCeEEEEEcCCCeeee-eeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCccceeeccccC
Confidence 99999999999999999999999987764332 24556789999999999999999999999999986555444443333
Q ss_pred cceEEEEEC
Q 043172 436 INGTALCTS 444 (564)
Q Consensus 436 ~~i~~l~~s 444 (564)
.+-..+.++
T Consensus 343 ~P~~~L~Ls 351 (545)
T PF11768_consen 343 TPKSTLQLS 351 (545)
T ss_pred CCccEEeee
Confidence 233334433
No 324
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=8.3e-06 Score=80.40 Aligned_cols=248 Identities=14% Similarity=0.037 Sum_probs=139.2
Q ss_pred CCceeEEEEeCCcCeEEEEEeeCCC-EEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCC-CEEEEEeCC
Q 043172 295 RNTKIQSIFLEDCPVRKASFLPDGS-QAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDS-SVIAFVGNE 372 (564)
Q Consensus 295 ~~~~~~~~~~~~~~I~~l~fspdg~-~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg-~~la~~~~d 372 (564)
....++-++.+...|..++|||..+ .+..++.+..|.|.|+.+..+... ...+ ..+++++|.-+. ++|+.|-.+
T Consensus 182 ~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vss--y~a~--~~~wSC~wDlde~h~IYaGl~n 257 (463)
T KOG1645|consen 182 DFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSS--YIAY--NQIWSCCWDLDERHVIYAGLQN 257 (463)
T ss_pred CcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeh--eecc--CCceeeeeccCCcceeEEeccC
Confidence 3444556677888999999999776 677888999999999999876443 3333 368999998765 566777789
Q ss_pred CeEEEEECCCCcEE-EEee---ecCcEEEEEE------ecCCCEEEEEeCCCeEEEEECCC--CceeEEEeecCCcceEE
Q 043172 373 GYILLVSSKTKELI-GTLK---MNGTVRSLAF------ADDGKQLLSSGGDGQVYHWDLRT--RTCIHRAVDEGCINGTA 440 (564)
Q Consensus 373 g~I~lwd~~t~~~~-~~~~---~~~~V~~l~~------spdg~~l~s~s~dg~V~lwD~~~--~~~~~~~~~~~~~~i~~ 440 (564)
|.|.+||++..+-. ..+. ...+|..++. .+.|.+|+..+.+ +..|.+.- +........+....+.+
T Consensus 258 G~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cis 335 (463)
T KOG1645|consen 258 GMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICIS 335 (463)
T ss_pred ceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceee
Confidence 99999999865422 1111 1234444433 2234455544443 44555432 22222222222223445
Q ss_pred EEECCCCCEEEEEeCC-C------cEEE-EeCCcccCCcceeeEEcc-cc----ccc---eeEEEEcCCCcEEEEEecCC
Q 043172 441 LCTSPDGTFFAAGSDS-G------IVNV-YNRQEFLGGKRKPIKTIE-NL----TTK---VDFMKFNNDAQILAICSTMK 504 (564)
Q Consensus 441 l~~sp~g~~lasgs~d-g------~V~i-wd~~~~~~~~~~~~~~~~-~~----~~~---I~~l~fspdg~~La~~s~~~ 504 (564)
+.+.+-.++++..... . .|-. -|...+ .++.... .+ ... -..+.-.++..+++.... .
T Consensus 336 mqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG-----~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd-~ 409 (463)
T KOG1645|consen 336 MQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDG-----FPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGD-S 409 (463)
T ss_pred eeecCccceEEEEecCCCCCccceeeeeeeccccC-----ceeeeecccccCCcccccccccceeccccccEEEEecC-C
Confidence 5555544444433221 0 0111 011111 1111110 01 000 011222345555554433 3
Q ss_pred CCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeC--CCCEEEEEcCCCeEEEEEcC
Q 043172 505 KNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSP--GGGFMAVGNAAGKVFLYKLN 559 (564)
Q Consensus 505 d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fsp--dg~~Lasgs~dG~V~lw~l~ 559 (564)
.+.+.+||..++++.+.++.. .+|..++... .+.||++-. |.+++||...
T Consensus 410 tn~lil~D~~s~evvQ~l~~~----epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 410 TNELILQDPHSFEVVQTLALS----EPVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred cceeEEeccchhheeeecccC----cceeecceeecCCcchhhhee-cceEEEEecC
Confidence 689999999999999988776 4566655433 345777665 5579998765
No 325
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.56 E-value=2.8e-06 Score=90.37 Aligned_cols=109 Identities=13% Similarity=0.125 Sum_probs=81.5
Q ss_pred eEEEEcCCCCEEEEEeC----CCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCcee
Q 043172 266 NSVQFHRNAQLLLVAGL----DRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKAD 341 (564)
Q Consensus 266 ~~l~fspdg~~l~s~s~----dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~ 341 (564)
+-.+|||..+++++++. .|.|.||--.+.. ..-.+.+ ..+++++|+|..-.|+.|-.-|.+.+|...+.+..
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfadtGEP-qr~Vt~P---~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~h 94 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFADTGEP-QRDVTYP---VHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETH 94 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEecCCCC-Ccccccc---eehhhhccChHHHHHhhccccceeEEEecCCceee
Confidence 44579999999999875 5889888543321 1111122 23567999998877888888899999998776643
Q ss_pred eeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 043172 342 KIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSK 381 (564)
Q Consensus 342 ~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~ 381 (564)
++...+..+|..+.|||+|+.++++..-|.|.+|...
T Consensus 95 ---tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 95 ---TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ---eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 3444444589999999999999999999999999775
No 326
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.55 E-value=1.3e-06 Score=93.72 Aligned_cols=184 Identities=15% Similarity=0.213 Sum_probs=132.5
Q ss_pred CCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCc
Q 043172 273 NAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEK 352 (564)
Q Consensus 273 dg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~ 352 (564)
++..++.||....+..+|+.+.. ..+........|.-++ .+++.+++|...|+|.+-|+++.+. ++.+..|..
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~--e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~--iht~~aHs~- 218 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEK--ETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFET--IHTFDAHSG- 218 (1118)
T ss_pred CCcceeecchhhheeeeecccce--eeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCce--eeeeecccc-
Confidence 34567778877778888887543 3333333333454444 3678999999999999999999887 445666665
Q ss_pred ceEEEEEcCCCCEEEEEeCC---------CeEEEEECCCCcEEEEeeecCcEEEEEEecC-CCEEEEEeCCCeEEEEE--
Q 043172 353 SLEFFEVSPDSSVIAFVGNE---------GYILLVSSKTKELIGTLKMNGTVRSLAFADD-GKQLLSSGGDGQVYHWD-- 420 (564)
Q Consensus 353 ~v~~~~~spdg~~la~~~~d---------g~I~lwd~~t~~~~~~~~~~~~V~~l~~spd-g~~l~s~s~dg~V~lwD-- 420 (564)
.+..+ .-.|+.|+++|.. ..|+|||++..+.+..+.......-+.|+|. ...+++++..|.+.+.|
T Consensus 219 siSDf--Dv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~ 296 (1118)
T KOG1275|consen 219 SISDF--DVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTA 296 (1118)
T ss_pred ceeee--eccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeecccc
Confidence 56555 4469999998864 4689999999888777764444466788884 46788889999999999
Q ss_pred -CCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 043172 421 -LRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQ 465 (564)
Q Consensus 421 -~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~ 465 (564)
+.....-.......+..+..+++|++++.+|.|..+|.|++|--.
T Consensus 297 ~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 297 TLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADR 342 (1118)
T ss_pred ccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCC
Confidence 433322222222333358999999999999999999999999843
No 327
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.55 E-value=6.8e-05 Score=77.59 Aligned_cols=240 Identities=13% Similarity=0.146 Sum_probs=142.0
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCc-----------------------------------------eeEEE
Q 043172 264 PINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNT-----------------------------------------KIQSI 302 (564)
Q Consensus 264 ~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~-----------------------------------------~~~~~ 302 (564)
.|++|.|.+...-|++|...|.|.||.+...++. +...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 5899999999999999999999999977422100 11223
Q ss_pred EeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccc-----cCCcceEEEEEcC-----CC---CEEEEE
Q 043172 303 FLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVG-----REEKSLEFFEVSP-----DS---SVIAFV 369 (564)
Q Consensus 303 ~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~-----~~~~~v~~~~~sp-----dg---~~la~~ 369 (564)
+...++|++++.|. =-++++|..+|.+.|.|++...+.....+.. .....++++.|+. |+ -.+++|
T Consensus 83 ~~~~g~vtal~~S~-iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNSD-IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE-B-TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecCC-CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 34568999999974 4599999999999999998887755433333 2234577787762 22 467888
Q ss_pred eCCCeEEEEECC--C-CcEEEEe-----eecCcEEEEE-EecC-C-------------------CEEEEEeCCCeEEEEE
Q 043172 370 GNEGYILLVSSK--T-KELIGTL-----KMNGTVRSLA-FADD-G-------------------KQLLSSGGDGQVYHWD 420 (564)
Q Consensus 370 ~~dg~I~lwd~~--t-~~~~~~~-----~~~~~V~~l~-~spd-g-------------------~~l~s~s~dg~V~lwD 420 (564)
.+.|.+.+|.+. . +.+...+ .+.++|..+. |+.+ | ..+++......++++.
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~ 241 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK 241 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence 889999999774 1 2222222 2456666555 3221 1 2234444567899999
Q ss_pred CCCCceeEEEeecCCcceEEEEEC-----CCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEcccc----ccceeEEEEc
Q 043172 421 LRTRTCIHRAVDEGCINGTALCTS-----PDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENL----TTKVDFMKFN 491 (564)
Q Consensus 421 ~~~~~~~~~~~~~~~~~i~~l~~s-----p~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~----~~~I~~l~fs 491 (564)
..+.+..++... ....+..+++- ..+..|++-..+|.|++|.+... +.+..+.-. ...+....|+
T Consensus 242 ~~~~k~~~K~~~-~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~L-----kei~~~~l~~~~d~~~~~~ssis 315 (395)
T PF08596_consen 242 PPKSKGAHKSFD-DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSL-----KEIKSVSLPPPLDSRRLSSSSIS 315 (395)
T ss_dssp TT---EEEEE-S-S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT-------EEEEEE-SS---HHHHTT-EE-
T ss_pred CCCCcccceeec-cccccceEEEEeecccCCceEEEEEECCCcEEEEECCCc-----hHhhcccCCCccccccccccEEC
Confidence 998888776663 32334444442 35667888899999999999887 666665432 2345667889
Q ss_pred CCCcEEEEEecCCCCeEEEEEc
Q 043172 492 NDAQILAICSTMKKNSLKLIHI 513 (564)
Q Consensus 492 pdg~~La~~s~~~d~~I~lwdl 513 (564)
++|+.++..+. ..+.++.+
T Consensus 316 ~~Gdi~~~~gp---sE~~l~sv 334 (395)
T PF08596_consen 316 RNGDIFYWTGP---SEIQLFSV 334 (395)
T ss_dssp TTS-EEEE-SS---SEEEEEEE
T ss_pred CCCCEEEEeCc---ccEEEEEE
Confidence 99998887764 55666555
No 328
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=3.7e-06 Score=82.80 Aligned_cols=248 Identities=12% Similarity=0.140 Sum_probs=143.3
Q ss_pred eecccCCCCCCCCeeEEEEcCCCC-EEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCC-CEEEEEeCCCe
Q 043172 252 LIDANADESSTGPINSVQFHRNAQ-LLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDG-SQAIIAGRRKF 329 (564)
Q Consensus 252 l~~~~~~~~h~~~V~~l~fspdg~-~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg-~~l~s~~~dg~ 329 (564)
++.......|...|..++|||... +|..++.+..|+|.|+.+ ...+.+...+ .++.+++|.-+. ++|++|-.+|.
T Consensus 183 fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet--~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~ 259 (463)
T KOG1645|consen 183 FKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLET--SCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGM 259 (463)
T ss_pred cchhhcccccchhhhhhccCccccceeeeeccCceEEEEeccc--ceeeeheecc-CCceeeeeccCCcceeEEeccCce
Confidence 333445567889999999999776 788999999999999984 3455666655 789999999755 56666668999
Q ss_pred EEEEECCCCceeeeccccc-cCCcceEEEE------EcCCCCEEEEEeCCCeEEEEECC--CCcEE--EEeeecCcEEEE
Q 043172 330 FYSLDLVKAKADKIGPLVG-REEKSLEFFE------VSPDSSVIAFVGNEGYILLVSSK--TKELI--GTLKMNGTVRSL 398 (564)
Q Consensus 330 i~iwdl~~~~~~~~~~~~~-~~~~~v~~~~------~spdg~~la~~~~dg~I~lwd~~--t~~~~--~~~~~~~~V~~l 398 (564)
|+|||+....... ..+.+ -...+|..++ ..+.|.+++.+..+ +..|.+. .+.+. ..+...+.+.++
T Consensus 260 VlvyD~R~~~~~~-~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cism 336 (463)
T KOG1645|consen 260 VLVYDMRQPEGPL-MELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISM 336 (463)
T ss_pred EEEEEccCCCchH-hhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeee
Confidence 9999998754321 11111 1111233332 23345555555433 3344432 22233 333356777788
Q ss_pred EEecCCCEEEEEeCCC-------eEE-EEECCCCceeEEEeecC-Ccc------eEEEEECCCCCEEE-EEeCCCcEEEE
Q 043172 399 AFADDGKQLLSSGGDG-------QVY-HWDLRTRTCIHRAVDEG-CIN------GTALCTSPDGTFFA-AGSDSGIVNVY 462 (564)
Q Consensus 399 ~~spdg~~l~s~s~dg-------~V~-lwD~~~~~~~~~~~~~~-~~~------i~~l~~sp~g~~la-sgs~dg~V~iw 462 (564)
++.+-.+.++...... .|- --|-..|..+..-.... +.. -..+.-.++.++|+ +|.....+.+|
T Consensus 337 qy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~ 416 (463)
T KOG1645|consen 337 QYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQ 416 (463)
T ss_pred eecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEe
Confidence 8877555555443320 011 11222233322111110 000 01121224445444 45567789999
Q ss_pred eCCcccCCcceeeEEccccccceeEEEEcC--CCcEEEEEecCCCCeEEEEEcC
Q 043172 463 NRQEFLGGKRKPIKTIENLTTKVDFMKFNN--DAQILAICSTMKKNSLKLIHIP 514 (564)
Q Consensus 463 d~~~~~~~~~~~~~~~~~~~~~I~~l~fsp--dg~~La~~s~~~d~~I~lwdl~ 514 (564)
|..+. ..+.++. ...+|..+.... .+.+|++-. |..++||...
T Consensus 417 D~~s~-----evvQ~l~-~~epv~Dicp~~~n~~syLa~LT---d~~v~Iyk~e 461 (463)
T KOG1645|consen 417 DPHSF-----EVVQTLA-LSEPVLDICPNDTNGSSYLALLT---DDRVHIYKNE 461 (463)
T ss_pred ccchh-----heeeecc-cCcceeecceeecCCcchhhhee---cceEEEEecC
Confidence 99987 6666665 346777766543 245666665 6788888654
No 329
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.50 E-value=4.2e-05 Score=80.18 Aligned_cols=227 Identities=16% Similarity=0.166 Sum_probs=123.7
Q ss_pred EEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 043172 302 IFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSK 381 (564)
Q Consensus 302 ~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~ 381 (564)
+......+..+.++|+|+++++++ +|...|+.....+.. ..| ....++|.+.+. +|+-...+.|.|+.--
T Consensus 28 lg~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k----~~G----~g~~~vw~~~n~-yAv~~~~~~I~I~kn~ 97 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNK----AFG----SGLSFVWSSRNR-YAVLESSSTIKIYKNF 97 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEE----EEE----E-SEEEE-TSSE-EEEE-TTS-EEEEETT
T ss_pred CCCCCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCccc----ccC----ceeEEEEecCcc-EEEEECCCeEEEEEcC
Confidence 344455678999999999999855 777778874333321 112 334688988554 6666668889997332
Q ss_pred CCcEEEEeeecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEE
Q 043172 382 TKELIGTLKMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNV 461 (564)
Q Consensus 382 t~~~~~~~~~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~i 461 (564)
.......+..+..+..+-. |..|+..+.+ .|.+||+.+++.+.++... ++..+.|+++|.++|..+.+ .+.|
T Consensus 98 ~~~~~k~i~~~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~---~vk~V~Ws~~g~~val~t~~-~i~i 169 (443)
T PF04053_consen 98 KNEVVKSIKLPFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS---AVKYVIWSDDGELVALVTKD-SIYI 169 (443)
T ss_dssp EE-TT-----SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS----E-EEEEE-TTSSEEEEE-S--SEEE
T ss_pred ccccceEEcCCcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC---CCcEEEEECCCCEEEEEeCC-eEEE
Confidence 3332234444444555543 8777776654 8999999999999888643 36899999999999998866 6777
Q ss_pred EeCCcc------cCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCce--eccCCCCCCCCCCcE
Q 043172 462 YNRQEF------LGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNV--FSNWPPANRNLQYPR 533 (564)
Q Consensus 462 wd~~~~------~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~--~~~~~~~~~~~~~V~ 533 (564)
++.... ..+-...+..+......|.+..|..+ .++..+. +.|+. +..|.. +..+. .++.
T Consensus 170 l~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~---~~lkY--l~~Ge~~~i~~ld------~~~y 236 (443)
T PF04053_consen 170 LKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTS---NHLKY--LVNGETGIIAHLD------KPLY 236 (443)
T ss_dssp EEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-T---TEEEE--EETTEEEEEEE-S------S--E
T ss_pred EEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcC---CeEEE--EEcCCcceEEEcC------CceE
Confidence 765531 00001134444433678889999876 4444443 35665 444433 23222 3466
Q ss_pred EEEEeCCCCEEEEEcCCCeEEEEEcC
Q 043172 534 CLDFSPGGGFMAVGNAAGKVFLYKLN 559 (564)
Q Consensus 534 ~l~fspdg~~Lasgs~dG~V~lw~l~ 559 (564)
=+.+.|..+.+.....++.|..+.+.
T Consensus 237 llgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 237 LLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp EEEEETTTTEEEEE-TT--EEEEE--
T ss_pred EEEEEccCCEEEEEECCCCEEEEEEC
Confidence 67788877888889999999888764
No 330
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.50 E-value=0.00026 Score=73.62 Aligned_cols=264 Identities=14% Similarity=0.159 Sum_probs=173.1
Q ss_pred CeeEEEEcCCCCEEEEEeC-CCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEe-CCCeEEEEECCCCcee
Q 043172 264 PINSVQFHRNAQLLLVAGL-DRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAG-RRKFFYSLDLVKAKAD 341 (564)
Q Consensus 264 ~V~~l~fspdg~~l~s~s~-dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~-~dg~i~iwdl~~~~~~ 341 (564)
....+...|++..+..+.. ...+...+.. .+...............++.++.+..++... .+..|.+.|..+....
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~--~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~ 109 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT--SNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVL 109 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc--cceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCccccee
Confidence 5566778888855444432 2233333322 2222221222213345778888888666655 4588999997776654
Q ss_pred eeccccccCCcceEEEEEcCCCCEEEEEeC---CCeEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEEe-CCCeEE
Q 043172 342 KIGPLVGREEKSLEFFEVSPDSSVIAFVGN---EGYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSG-GDGQVY 417 (564)
Q Consensus 342 ~~~~~~~~~~~~v~~~~~spdg~~la~~~~---dg~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s-~dg~V~ 417 (564)
....+ +. ....++++|+++.++++.. ++.+.+.|..++..+........-..+++.|+|..++++. .++.|.
T Consensus 110 ~~~~v-G~---~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~ 185 (381)
T COG3391 110 GSIPV-GL---GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVS 185 (381)
T ss_pred eEeee-cc---CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEEEEecCCCeEE
Confidence 43222 22 3567999999988877765 6899999999999988865332238999999999777665 678999
Q ss_pred EEECCCCceeEEEee----cCCcceEEEEECCCCCEEEEEeCC---CcEEEEeCCcccCCcceeeEEcccccc-ceeEEE
Q 043172 418 HWDLRTRTCIHRAVD----EGCINGTALCTSPDGTFFAAGSDS---GIVNVYNRQEFLGGKRKPIKTIENLTT-KVDFMK 489 (564)
Q Consensus 418 lwD~~~~~~~~~~~~----~~~~~i~~l~~sp~g~~lasgs~d---g~V~iwd~~~~~~~~~~~~~~~~~~~~-~I~~l~ 489 (564)
+.|........ ... .-......+.++|+|.++.+.... +.+.+.|.... ........... ....+.
T Consensus 186 vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~-----~v~~~~~~~~~~~~~~v~ 259 (381)
T COG3391 186 VIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATG-----NVTATDLPVGSGAPRGVA 259 (381)
T ss_pred EEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCc-----eEEEeccccccCCCCcee
Confidence 99977665543 110 111123578899999966555433 58889888875 33333111112 466789
Q ss_pred EcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCC
Q 043172 490 FNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPG 540 (564)
Q Consensus 490 fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspd 540 (564)
++|+|.++.+.... .+.+.+.+..+..+....+........+..+++.+.
T Consensus 260 ~~p~g~~~yv~~~~-~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 260 VDPAGKAAYVANSQ-GGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred ECCCCCEEEEEecC-CCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence 99999999988653 589999999998888776666554455666666654
No 331
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.47 E-value=0.00034 Score=69.35 Aligned_cols=247 Identities=14% Similarity=0.090 Sum_probs=148.6
Q ss_pred CeeEEEEcCCCCEEEEEeC----------CCcEEEEEecCCCCceeEEEEeCCc-------CeEEEEEeeCCCEEEEEe-
Q 043172 264 PINSVQFHRNAQLLLVAGL----------DRRLRFFQIDGKRNTKIQSIFLEDC-------PVRKASFLPDGSQAIIAG- 325 (564)
Q Consensus 264 ~V~~l~fspdg~~l~s~s~----------dg~I~lwd~~~~~~~~~~~~~~~~~-------~I~~l~fspdg~~l~s~~- 325 (564)
-.-.+.++|+++.+++++. .-.|.+||..+ ......+..... ....++++.+|+++++..
T Consensus 37 ~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~T--L~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~ 114 (342)
T PF06433_consen 37 FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQT--LSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNF 114 (342)
T ss_dssp SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTT--TEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEE
T ss_pred cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCc--CcccceEecCCcchheecccccceEEccCCcEEEEEcc
Confidence 3445778999999887642 33688998764 334444433322 123467888999988864
Q ss_pred -CCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECC-CCcEEEEee---e--cCc-EEE
Q 043172 326 -RRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSK-TKELIGTLK---M--NGT-VRS 397 (564)
Q Consensus 326 -~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~-t~~~~~~~~---~--~~~-V~~ 397 (564)
--..|.|.|+..++......++|. ..+--+++ +-+.+.|.||.+..+.+. .|+...... + ..+ +..
T Consensus 115 TPa~SVtVVDl~~~kvv~ei~~PGC-----~~iyP~~~-~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~ 188 (342)
T PF06433_consen 115 TPATSVTVVDLAAKKVVGEIDTPGC-----WLIYPSGN-RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEH 188 (342)
T ss_dssp SSSEEEEEEETTTTEEEEEEEGTSE-----EEEEEEET-TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S-
T ss_pred CCCCeEEEEECCCCceeeeecCCCE-----EEEEecCC-CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccc
Confidence 445799999999988665555542 22222222 346677788999888887 555543322 1 122 234
Q ss_pred EEEecCCCEEEEEeCCCeEEEEECCCCcee--EEEeec---------CCcceEEEEECCCCCEEEEEeC---CC------
Q 043172 398 LAFADDGKQLLSSGGDGQVYHWDLRTRTCI--HRAVDE---------GCINGTALCTSPDGTFFAAGSD---SG------ 457 (564)
Q Consensus 398 l~~spdg~~l~s~s~dg~V~lwD~~~~~~~--~~~~~~---------~~~~i~~l~~sp~g~~lasgs~---dg------ 457 (564)
-++...+..++..+.+|.|+-.|+...... ..+..- ...+..-+++++..+.|++.-. .|
T Consensus 189 ~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpg 268 (342)
T PF06433_consen 189 PAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPG 268 (342)
T ss_dssp -EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-E
T ss_pred cceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCc
Confidence 455555666666789999999999865432 222210 0011235777776554444321 11
Q ss_pred -cEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEE-EEecCCCCeEEEEEcCCCceeccCCCC
Q 043172 458 -IVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILA-ICSTMKKNSLKLIHIPSYNVFSNWPPA 525 (564)
Q Consensus 458 -~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La-~~s~~~d~~I~lwdl~s~~~~~~~~~~ 525 (564)
.|.+||+.+. +.+..+.- ..++.+|+.+.+.+=++ +.+. .++.|.+||..+++.+......
T Consensus 269 teVWv~D~~t~-----krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~-~~~~l~v~D~~tGk~~~~~~~l 331 (342)
T PF06433_consen 269 TEVWVYDLKTH-----KRVARIPL-EHPIDSIAVSQDDKPLLYALSA-GDGTLDVYDAATGKLVRSIEQL 331 (342)
T ss_dssp EEEEEEETTTT-----EEEEEEEE-EEEESEEEEESSSS-EEEEEET-TTTEEEEEETTT--EEEEE---
T ss_pred eEEEEEECCCC-----eEEEEEeC-CCccceEEEccCCCcEEEEEcC-CCCeEEEEeCcCCcEEeehhcc
Confidence 4888888887 88888773 46788999999877444 4443 3789999999999988876544
No 332
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.45 E-value=0.00044 Score=68.56 Aligned_cols=266 Identities=13% Similarity=0.087 Sum_probs=163.2
Q ss_pred CcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEe----------CCCeEEEEECCCCceeeecccccc-CC-
Q 043172 284 RRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAG----------RRKFFYSLDLVKAKADKIGPLVGR-EE- 351 (564)
Q Consensus 284 g~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~----------~dg~i~iwdl~~~~~~~~~~~~~~-~~- 351 (564)
+.+.|+|.+ ..+.+-.+.. +-...+..+|+++.++++. +.-.|.+||..+-....-..++.. ..
T Consensus 17 ~rv~viD~d--~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~ 92 (342)
T PF06433_consen 17 SRVYVIDAD--SGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQ 92 (342)
T ss_dssp EEEEEEETT--TTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--
T ss_pred ceEEEEECC--CCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhe
Confidence 357777665 4445555543 2334567899999998763 234699999999866543334332 11
Q ss_pred --cceEEEEEcCCCCEEEEEeC--CCeEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEEeCCCeEEEEECC-CCce
Q 043172 352 --KSLEFFEVSPDSSVIAFVGN--EGYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLR-TRTC 426 (564)
Q Consensus 352 --~~v~~~~~spdg~~la~~~~--dg~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~-~~~~ 426 (564)
.....++++.+++++++... ...|.|.|+..++.+..+...+...-.-+.+ +.+.+.+.||.+.-..+. .|+.
T Consensus 93 ~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~--~~F~~lC~DGsl~~v~Ld~~Gk~ 170 (342)
T PF06433_consen 93 VVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGN--RGFSMLCGDGSLLTVTLDADGKE 170 (342)
T ss_dssp BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEET--TEEEEEETTSCEEEEEETSTSSE
T ss_pred ecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCC--CceEEEecCCceEEEEECCCCCE
Confidence 12234788999999888643 4789999999999998887666444333332 347777889999988887 4554
Q ss_pred eEEEe----ecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEcccc----------ccceeEEEEcC
Q 043172 427 IHRAV----DEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENL----------TTKVDFMKFNN 492 (564)
Q Consensus 427 ~~~~~----~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~----------~~~I~~l~fsp 492 (564)
..+.. .....-...-+++..+..++.-+..|.|+-.|+... ..+....+.-. .+.-.-+++++
T Consensus 171 ~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~---~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~ 247 (342)
T PF06433_consen 171 AQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGD---SAKFGKPWSLLTDAEKADGWRPGGWQLIAYHA 247 (342)
T ss_dssp EEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTS---SEEEEEEEESS-HHHHHTTEEE-SSS-EEEET
T ss_pred eEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCC---cccccCcccccCccccccCcCCcceeeeeecc
Confidence 43221 111111223344555556666889999999888764 22333333211 12334578887
Q ss_pred CCcEEEEEec------CCCC--eEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCC-EEEEE-cCCCeEEEEEcCCCC
Q 043172 493 DAQILAICST------MKKN--SLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGG-FMAVG-NAAGKVFLYKLNHYH 562 (564)
Q Consensus 493 dg~~La~~s~------~~d~--~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~-~Lasg-s~dG~V~lw~l~~~~ 562 (564)
....|++.-. .++. .|.++|+.+.+.+..++.. ..+.+|..+.+.+ +|++. ..+|.+.+||..+++
T Consensus 248 ~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~----~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk 323 (342)
T PF06433_consen 248 ASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE----HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGK 323 (342)
T ss_dssp TTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE----EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--
T ss_pred ccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC----CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence 6655554322 1122 4777889999998888754 4577999998776 55443 467999999998765
No 333
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.43 E-value=2.2e-05 Score=82.01 Aligned_cols=181 Identities=21% Similarity=0.249 Sum_probs=115.4
Q ss_pred ceEEEEEcCCCCEEEEEe---CC-CeEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEEe-CCC--eEEEEECCCCc
Q 043172 353 SLEFFEVSPDSSVIAFVG---NE-GYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSG-GDG--QVYHWDLRTRT 425 (564)
Q Consensus 353 ~v~~~~~spdg~~la~~~---~d-g~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s-~dg--~V~lwD~~~~~ 425 (564)
.+..-+|+|++..++... .. ..+.++++.+++....+...+.-...+|+|||+.|+.+. .|| .|+++|+.++.
T Consensus 194 ~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~ 273 (425)
T COG0823 194 LILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN 273 (425)
T ss_pred ceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc
Confidence 566778999998766553 22 469999999998877777777777889999998877654 344 58888988776
Q ss_pred eeEEEeecCCcceEEEEECCCCCEEEEEeC-CC--cEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEec
Q 043172 426 CIHRAVDEGCINGTALCTSPDGTFFAAGSD-SG--IVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICST 502 (564)
Q Consensus 426 ~~~~~~~~~~~~i~~l~~sp~g~~lasgs~-dg--~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~ 502 (564)
. ..+....+.. +.-.|+|+|++|+..+. .| .|.++++... . ...+......-..-.|+|||.+|++.+.
T Consensus 274 ~-~~Lt~~~gi~-~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~-----~-~~riT~~~~~~~~p~~SpdG~~i~~~~~ 345 (425)
T COG0823 274 L-PRLTNGFGIN-TSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGS-----Q-VTRLTFSGGGNSNPVWSPDGDKIVFESS 345 (425)
T ss_pred c-eecccCCccc-cCccCCCCCCEEEEEeCCCCCcceEEECCCCC-----c-eeEeeccCCCCcCccCCCCCCEEEEEec
Confidence 3 3344333322 36789999998887765 44 4556666553 2 2233222233337889999999999885
Q ss_pred CCCCe--EEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEE
Q 043172 503 MKKNS--LKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAV 546 (564)
Q Consensus 503 ~~d~~--I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Las 546 (564)
. .|. |.+.++.++...+.+... ......+|.|+|..+..
T Consensus 346 ~-~g~~~i~~~~~~~~~~~~~lt~~----~~~e~ps~~~ng~~i~~ 386 (425)
T COG0823 346 S-GGQWDIDKNDLASGGKIRILTST----YLNESPSWAPNGRMIMF 386 (425)
T ss_pred c-CCceeeEEeccCCCCcEEEcccc----ccCCCCCcCCCCceEEE
Confidence 3 344 666666555432222111 12233456666665543
No 334
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=5.8e-05 Score=81.18 Aligned_cols=201 Identities=13% Similarity=0.117 Sum_probs=134.9
Q ss_pred EEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCC-----eEEEEECCC----
Q 043172 312 ASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEG-----YILLVSSKT---- 382 (564)
Q Consensus 312 l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg-----~I~lwd~~t---- 382 (564)
-+|++.+..++.|+.+|.|.+++-.- + .+..+..+....|..+....+.++|++.+.|+ .|++|++..
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~s~-~--~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNSSF-Q--LIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred eEEcCCCceEEEeeccccEEEecccc-e--eeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence 34788899999999999888876321 1 12334444432244444444446788777653 699999853
Q ss_pred --CcEEEEee--------ecCcEEEEEEecCCCEEEEEeCCCeEEEEECC---CCceeEEEeecCCcceEEEEECCCCCE
Q 043172 383 --KELIGTLK--------MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLR---TRTCIHRAVDEGCINGTALCTSPDGTF 449 (564)
Q Consensus 383 --~~~~~~~~--------~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~---~~~~~~~~~~~~~~~i~~l~~sp~g~~ 449 (564)
.+++...+ ...++.+++.+.+-+.+++|-.+|.|.++.-. .......+...+..+||.+++..++..
T Consensus 106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s 185 (933)
T KOG2114|consen 106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKS 185 (933)
T ss_pred CCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCce
Confidence 34442222 14578999999999999999999999988532 222233455566778999999988886
Q ss_pred EEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccC
Q 043172 450 FAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNW 522 (564)
Q Consensus 450 lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~ 522 (564)
++.......|.+|.+... ...+..+.+|..++.|..|++...-+++|+ ...|.+|+.+....-..+
T Consensus 186 ~lFv~Tt~~V~~y~l~gr----~p~~~~ld~~G~~lnCss~~~~t~qfIca~---~e~l~fY~sd~~~~cfaf 251 (933)
T KOG2114|consen 186 VLFVATTEQVMLYSLSGR----TPSLKVLDNNGISLNCSSFSDGTYQFICAG---SEFLYFYDSDGRGPCFAF 251 (933)
T ss_pred eEEEEecceeEEEEecCC----CcceeeeccCCccceeeecCCCCccEEEec---CceEEEEcCCCcceeeee
Confidence 444444557999999843 123555888999999999998766455444 368999998754443333
No 335
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.39 E-value=7.3e-06 Score=87.34 Aligned_cols=234 Identities=12% Similarity=0.069 Sum_probs=134.9
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeee
Q 043172 264 PINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKI 343 (564)
Q Consensus 264 ~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~ 343 (564)
.++++||||..-+|+.|-.-|.+.+|..... ........|..+|..+.|||+|+.++++..-|.+.+|....-...+.
T Consensus 61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~--e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~ 138 (1416)
T KOG3617|consen 61 HATSLCWHPEEFVLAQGWEMGVSDVQKTNTT--ETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQT 138 (1416)
T ss_pred ehhhhccChHHHHHhhccccceeEEEecCCc--eeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeecccccc
Confidence 3678999999989999988999999976532 33344456899999999999999999999999999998762111111
Q ss_pred ccccccCC---cceEEE----------------------------EE-------------cCCCCEEEEEeCCCeEEEEE
Q 043172 344 GPLVGREE---KSLEFF----------------------------EV-------------SPDSSVIAFVGNEGYILLVS 379 (564)
Q Consensus 344 ~~~~~~~~---~~v~~~----------------------------~~-------------spdg~~la~~~~dg~I~lwd 379 (564)
..+..|.- -...|+ -| .|+|..+++++.+|+|+..|
T Consensus 139 ~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvd 218 (1416)
T KOG3617|consen 139 SNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVD 218 (1416)
T ss_pred chhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEc
Confidence 11111100 000111 11 35677788888888888887
Q ss_pred CCCCcEEEEeeecCcEEEEEEecCCCEEEEEeCCCeEEEEEC----------------CCCc------------e---eE
Q 043172 380 SKTKELIGTLKMNGTVRSLAFADDGKQLLSSGGDGQVYHWDL----------------RTRT------------C---IH 428 (564)
Q Consensus 380 ~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~----------------~~~~------------~---~~ 428 (564)
- .+......+..+.| .+-|.+...-+++...+-.+.++-+ +.|. . ..
T Consensus 219 q-~g~~~~V~k~dS~v-QmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~e 296 (1416)
T KOG3617|consen 219 Q-NGRQRTVHKLDSEV-QMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSE 296 (1416)
T ss_pred C-CCcEEEEEEccchH-HHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCc
Confidence 3 34444333322111 1111111111111111111111110 0000 0 01
Q ss_pred EEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcc-cCCcc-eeeEEcc---ccccceeEEEEcCCCcEEEEEe
Q 043172 429 RAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEF-LGGKR-KPIKTIE---NLTTKVDFMKFNNDAQILAICS 501 (564)
Q Consensus 429 ~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~-~~~~~-~~~~~~~---~~~~~I~~l~fspdg~~La~~s 501 (564)
++....+-.++|+|++..+..|+.|...|.+.+|--... ..+.+ .-..++. ...+.|+.+.|.|--..+++-+
T Consensus 297 Kyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~avn~ 374 (1416)
T KOG3617|consen 297 KYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAVNT 374 (1416)
T ss_pred chhhhcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhhhhh
Confidence 111223446899999999999999999999999964332 21222 2333333 3457899999998655555444
No 336
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.39 E-value=7.9e-05 Score=79.41 Aligned_cols=218 Identities=9% Similarity=0.024 Sum_probs=131.4
Q ss_pred cCCCCEEEEEe-CCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCC----CeEEEEECCCCceeeecc
Q 043172 271 HRNAQLLLVAG-LDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRR----KFFYSLDLVKAKADKIGP 345 (564)
Q Consensus 271 spdg~~l~s~s-~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~d----g~i~iwdl~~~~~~~~~~ 345 (564)
+|+|+.+...+ ..+.+.+.|.. +......+.... ....+.++|+|+++++++.+ .++...+...........
T Consensus 201 pnDGk~l~~~~ey~~~vSvID~e--tmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfn 277 (635)
T PRK02888 201 PNDGKDLDDPKKYRSLFTAVDAE--TMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFN 277 (635)
T ss_pred CCCCCEeecccceeEEEEEEECc--cceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEc
Confidence 44555443222 24555666555 344555555433 44678899999999988632 223332222111111000
Q ss_pred ccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCC-----CcEEEEeeecCcEEEEEEecCCCEEEEEeC-CCeEEEE
Q 043172 346 LVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKT-----KELIGTLKMNGTVRSLAFADDGKQLLSSGG-DGQVYHW 419 (564)
Q Consensus 346 ~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t-----~~~~~~~~~~~~V~~l~~spdg~~l~s~s~-dg~V~lw 419 (564)
+.+ .-++.++|++...+ ++.|.++|..+ ...+..+........+.++|||+++++++. +.+|.++
T Consensus 278 i~~-------iea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVI 348 (635)
T PRK02888 278 IAR-------IEEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVI 348 (635)
T ss_pred hHH-------HHHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEE
Confidence 000 01334578876663 57899999998 466777777788999999999999888765 7899999
Q ss_pred ECCCCce------------eEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCccc----CCc-ceeeEEccccc
Q 043172 420 DLRTRTC------------IHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFL----GGK-RKPIKTIENLT 482 (564)
Q Consensus 420 D~~~~~~------------~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~----~~~-~~~~~~~~~~~ 482 (564)
|+.+.+. +..... +......+|.++|..+.+..-|..|..|++.... +.. ...+..+.-|-
T Consensus 349 Dv~k~k~~~~~~~~~~~~vvaevev--GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y 426 (635)
T PRK02888 349 DVRKLDDLFDGKIKPRDAVVAEPEL--GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHY 426 (635)
T ss_pred EChhhhhhhhccCCccceEEEeecc--CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCC
Confidence 9987552 222222 2344577899999888888889999999988620 011 12233333222
Q ss_pred cc-----eeEEEEcCCCcEEEEEec
Q 043172 483 TK-----VDFMKFNNDAQILAICST 502 (564)
Q Consensus 483 ~~-----I~~l~fspdg~~La~~s~ 502 (564)
.+ ...=.-.|||++|++...
T Consensus 427 ~pgh~~~~~g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 427 QPGHNHASMGETKEADGKWLVSLNK 451 (635)
T ss_pred ccceeeecCCCcCCCCCCEEEEccc
Confidence 21 112223689999987764
No 337
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.37 E-value=0.0014 Score=68.25 Aligned_cols=241 Identities=18% Similarity=0.212 Sum_probs=162.6
Q ss_pred CeEEEEEeeCCCEEEEEe-CCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEE-EeCCCeEEEEECCCCcE
Q 043172 308 PVRKASFLPDGSQAIIAG-RRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAF-VGNEGYILLVSSKTKEL 385 (564)
Q Consensus 308 ~I~~l~fspdg~~l~s~~-~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~~dg~I~lwd~~t~~~ 385 (564)
....+...+++..++... ....+.+.+.............+ .....+++++.+..++. ...+..|.+.|..+...
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~---~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~ 108 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGG---VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTV 108 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCC---ccccceeeCCCCCeEEEecCCCCeEEEEcCcccce
Confidence 445677788886665543 22245555544222211111111 23457888998885544 44568999999888888
Q ss_pred EEEeeecCcEEEEEEecCCCEEEEEeC---CCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEe-CCCcEEE
Q 043172 386 IGTLKMNGTVRSLAFADDGKQLLSSGG---DGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGS-DSGIVNV 461 (564)
Q Consensus 386 ~~~~~~~~~V~~l~~spdg~~l~s~s~---dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs-~dg~V~i 461 (564)
............++++|++..++++.. ++++.+.|..+.+.+..... +..+ ..++++|+|..+++.. .++.|.+
T Consensus 109 ~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~v-G~~P-~~~a~~p~g~~vyv~~~~~~~v~v 186 (381)
T COG3391 109 LGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPV-GNTP-TGVAVDPDGNKVYVTNSDDNTVSV 186 (381)
T ss_pred eeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEec-CCCc-ceEEECCCCCeEEEEecCCCeEEE
Confidence 888775557889999999988887766 68999999999988887443 3223 7899999999666554 7889999
Q ss_pred EeCCcccCCcceeeE-E---ccccccceeEEEEcCCCcEEEEEecCC-CCeEEEEEcCCCceecc-CCCCCCCCCCcEEE
Q 043172 462 YNRQEFLGGKRKPIK-T---IENLTTKVDFMKFNNDAQILAICSTMK-KNSLKLIHIPSYNVFSN-WPPANRNLQYPRCL 535 (564)
Q Consensus 462 wd~~~~~~~~~~~~~-~---~~~~~~~I~~l~fspdg~~La~~s~~~-d~~I~lwdl~s~~~~~~-~~~~~~~~~~V~~l 535 (564)
+|.... .... . ..........+.++|+|.++.+..... ++.+...+..++..... .+.. .. ....+
T Consensus 187 i~~~~~-----~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~--~~-~~~~v 258 (381)
T COG3391 187 IDTSGN-----SVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVG--SG-APRGV 258 (381)
T ss_pred EeCCCc-----ceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccc--cC-CCCce
Confidence 997764 2221 1 122234456789999999877766531 26899999988877664 2222 11 45678
Q ss_pred EEeCCCCEEEEEcCC-CeEEEEEcCCC
Q 043172 536 DFSPGGGFMAVGNAA-GKVFLYKLNHY 561 (564)
Q Consensus 536 ~fspdg~~Lasgs~d-G~V~lw~l~~~ 561 (564)
.++|+|.++.+.... +.|.+-+...+
T Consensus 259 ~~~p~g~~~yv~~~~~~~V~vid~~~~ 285 (381)
T COG3391 259 AVDPAGKAAYVANSQGGTVSVIDGATD 285 (381)
T ss_pred eECCCCCEEEEEecCCCeEEEEeCCCC
Confidence 999999998888544 77777766543
No 338
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.35 E-value=9e-05 Score=78.24 Aligned_cols=159 Identities=9% Similarity=0.004 Sum_probs=108.1
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCce
Q 043172 261 STGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKA 340 (564)
Q Consensus 261 h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~ 340 (564)
|...|.--++...+.+++.|+..|.+++|+-.++.... ....+..+.+..+..+++..++|+|+..|.|.++-++.+..
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~-~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRK-LKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhc-ccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCC
Confidence 66677777888889999999999999999876543222 22222445566677888888888999999999998876432
Q ss_pred e---eeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----EEEEeeecCcEEEEEEecCCCEEEEEeC
Q 043172 341 D---KIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKE-----LIGTLKMNGTVRSLAFADDGKQLLSSGG 412 (564)
Q Consensus 341 ~---~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~-----~~~~~~~~~~V~~l~~spdg~~l~s~s~ 412 (564)
. .+......+...|++++|++++..+++|...|.|.+-.+.+.. ....+...+.|..+.+. ++. |++++.
T Consensus 111 ~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~-LLVStl 188 (726)
T KOG3621|consen 111 RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSY-LLVSTL 188 (726)
T ss_pred CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cce-ehHhhh
Confidence 2 2222222234589999999999999999999999998887721 11122246677777766 333 443333
Q ss_pred CCeEEEEECCC
Q 043172 413 DGQVYHWDLRT 423 (564)
Q Consensus 413 dg~V~lwD~~~ 423 (564)
- ...++++..
T Consensus 189 ~-r~~Lc~tE~ 198 (726)
T KOG3621|consen 189 T-RCILCQTEA 198 (726)
T ss_pred h-hhheeecch
Confidence 2 234555543
No 339
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.27 E-value=0.00059 Score=65.81 Aligned_cols=206 Identities=17% Similarity=0.274 Sum_probs=116.8
Q ss_pred ccccCCcceEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEEeee--cCcEEEEEEecCCCEEEEEeCCCeEEEEECC
Q 043172 346 LVGREEKSLEFFEVSPDSS-VIAFVGNEGYILLVSSKTKELIGTLKM--NGTVRSLAFADDGKQLLSSGGDGQVYHWDLR 422 (564)
Q Consensus 346 ~~~~~~~~v~~~~~spdg~-~la~~~~dg~I~lwd~~t~~~~~~~~~--~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~ 422 (564)
+.+-.. .+..++|.|+.+ ++++....+.|..++. +|+.+..+.. .+..-+|++..++.++++.-.++.++++++.
T Consensus 17 l~g~~~-e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 17 LPGILD-ELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp -TT--S--EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred CCCccC-CccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 444444 599999999755 5556666789999996 5888888773 3578899998888777766668999999984
Q ss_pred CCc------eeEEEe----ecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEE------cccccccee
Q 043172 423 TRT------CIHRAV----DEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKT------IENLTTKVD 486 (564)
Q Consensus 423 ~~~------~~~~~~----~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~------~~~~~~~I~ 486 (564)
... ....+. ..+..+.-.++|+|.++.|+++-...-..||.+........-.+.. .......++
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 321 111222 1244457899999988877777777667777776421000011111 122345688
Q ss_pred EEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCC------CCCCcEEEEEeCCCCEEEEEcCCCeEEEE
Q 043172 487 FMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANR------NLQYPRCLDFSPGGGFMAVGNAAGKVFLY 556 (564)
Q Consensus 487 ~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~------~~~~V~~l~fspdg~~Lasgs~dG~V~lw 556 (564)
.++++|....|++-|.. ...|..+| .+|++...++...+ .....-.|+|.++|.+.++ +.-+..++|
T Consensus 175 ~l~~~p~t~~lliLS~e-s~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDE-SRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp EEEEETTTTEEEEEETT-TTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred ceEEcCCCCeEEEEECC-CCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 99999976666555543 67788888 56666555444332 1234678999999875554 567666665
No 340
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.27 E-value=0.00089 Score=72.06 Aligned_cols=273 Identities=11% Similarity=0.039 Sum_probs=151.1
Q ss_pred CCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCc------CeE--EEEEeeCCCEEEEEeCCCeEEEEECCCCceeeecc
Q 043172 274 AQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDC------PVR--KASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGP 345 (564)
Q Consensus 274 g~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~------~I~--~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~ 345 (564)
+..+++++.++.|.-.|..++ ..+-....... ++. .++.. ++..+++++.++.|+.+|..+|+..-...
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG--~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~ 137 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATG--KVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFG 137 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCC--hhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeec
Confidence 445666777788777776533 23322221111 110 11111 22688888899999999999998754333
Q ss_pred ccccCCcceEEEEEcC--CCCEEEEEe---------CCCeEEEEECCCCcEEEEeeec-Cc-------------------
Q 043172 346 LVGREEKSLEFFEVSP--DSSVIAFVG---------NEGYILLVSSKTKELIGTLKMN-GT------------------- 394 (564)
Q Consensus 346 ~~~~~~~~v~~~~~sp--dg~~la~~~---------~dg~I~lwd~~t~~~~~~~~~~-~~------------------- 394 (564)
........ ..+.-+| .+..+++++ .+|.|..+|..+++.+..+... ..
T Consensus 138 ~~~~~~~~-~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ 216 (488)
T cd00216 138 NNDQVPPG-YTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGG 216 (488)
T ss_pred CCCCcCcc-eEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCC
Confidence 33221000 0011111 124455543 3688999999999988776531 10
Q ss_pred -E-EEEEEecCCCEEEEEeCCC------------------eEEEEECCCCceeEEEeecCC-c----ceEEEEEC----C
Q 043172 395 -V-RSLAFADDGKQLLSSGGDG------------------QVYHWDLRTRTCIHRAVDEGC-I----NGTALCTS----P 445 (564)
Q Consensus 395 -V-~~l~~spdg~~l~s~s~dg------------------~V~lwD~~~~~~~~~~~~~~~-~----~i~~l~~s----p 445 (564)
+ ...++.+.+..+++++.++ .|+-+|+.+++.+-.+..... . ......+. -
T Consensus 217 ~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~ 296 (488)
T cd00216 217 TSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPK 296 (488)
T ss_pred CccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecccc
Confidence 0 1234444556777777665 799999999998876653211 0 00001111 1
Q ss_pred CCC---EEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEe----------------cCCCC
Q 043172 446 DGT---FFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICS----------------TMKKN 506 (564)
Q Consensus 446 ~g~---~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s----------------~~~d~ 506 (564)
++. .+++++.+|.+..+|..++ +++...... ...++.+| ..+++++ ...++
T Consensus 297 ~g~~~~~V~~g~~~G~l~ald~~tG-----~~~W~~~~~---~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G 366 (488)
T cd00216 297 DGKPVPAIVHAPKNGFFYVLDRTTG-----KLISARPEV---EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKG 366 (488)
T ss_pred CCCeeEEEEEECCCceEEEEECCCC-----cEeeEeEee---ccccccCC--ceEEEccccccccCcccccCCCCCCCce
Confidence 333 6788889999999999987 665544311 11233344 2233221 11156
Q ss_pred eEEEEEcCCCceeccCCCCCCCC-----CCc--EEEEEeCCCCEEEEEcCCCeEEEEEcCCCC
Q 043172 507 SLKLIHIPSYNVFSNWPPANRNL-----QYP--RCLDFSPGGGFMAVGNAAGKVFLYKLNHYH 562 (564)
Q Consensus 507 ~I~lwdl~s~~~~~~~~~~~~~~-----~~V--~~l~fspdg~~Lasgs~dG~V~lw~l~~~~ 562 (564)
.|.-+|+.+++.+-..+...... .+. ..+. ..+.+|++++.+|.|+.++..+.+
T Consensus 367 ~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG~l~ald~~tG~ 427 (488)
T cd00216 367 GLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADGYFRAFDATTGK 427 (488)
T ss_pred EEEEEeCCCCcEeeEeeCCccccccccCCcccCcceE--ecCCeEEEECCCCeEEEEECCCCc
Confidence 78888888887654333221000 011 1122 245788889999999999987764
No 341
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.24 E-value=2.9e-07 Score=95.34 Aligned_cols=205 Identities=11% Similarity=0.051 Sum_probs=132.5
Q ss_pred CCCeeEEEEcCC--CCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEee-CCCEEEEEe----CCCeEEEEE
Q 043172 262 TGPINSVQFHRN--AQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLP-DGSQAIIAG----RRKFFYSLD 334 (564)
Q Consensus 262 ~~~V~~l~fspd--g~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fsp-dg~~l~s~~----~dg~i~iwd 334 (564)
...+.|+++.-+ ..++++|..+|.|.+-.+......--..++++..+.++++|++ |.+.||+|- .+..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 345777776553 3578889999999998775433332334566778899999998 566677663 356799999
Q ss_pred CCCCcee--eeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeeecCcEEEEEEec-CCCEEEEEe
Q 043172 335 LVKAKAD--KIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLKMNGTVRSLAFAD-DGKQLLSSG 411 (564)
Q Consensus 335 l~~~~~~--~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~~~~~V~~l~~sp-dg~~l~s~s 411 (564)
+.++-.. ....+.+.......+++|-.+.+++.+|.....+.++|++........-....+..+...| .+.++++-+
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~ 215 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS 215 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc
Confidence 9987221 1112222122245678888888899999888899999987432211111234567788888 677776654
Q ss_pred CCCeEEEEE-CCCCc-eeEEEeec---CCcceEEEEECCCCC-EEEEE-eCCCcEEEEeCCcc
Q 043172 412 GDGQVYHWD-LRTRT-CIHRAVDE---GCINGTALCTSPDGT-FFAAG-SDSGIVNVYNRQEF 467 (564)
Q Consensus 412 ~dg~V~lwD-~~~~~-~~~~~~~~---~~~~i~~l~~sp~g~-~lasg-s~dg~V~iwd~~~~ 467 (564)
||.|.+|| .+.-+ ++..+... .......++|+|... .+++. -..++|++|++...
T Consensus 216 -dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v 277 (783)
T KOG1008|consen 216 -DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVV 277 (783)
T ss_pred -cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccccc
Confidence 99999999 43322 22212111 122478899998643 44444 45789999998754
No 342
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.23 E-value=7e-05 Score=79.05 Aligned_cols=116 Identities=14% Similarity=0.110 Sum_probs=90.9
Q ss_pred CcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE
Q 043172 306 DCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKEL 385 (564)
Q Consensus 306 ~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~ 385 (564)
...|.--++...+++++.|+..|.+++|+-.++..... ...+.. ..+..+.+|++..++|+|+..|.|.++-+....+
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~-~~~~~~-~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKL-KNEGAT-GITCVRSVSSVEYLVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhhhcc-cccCcc-ceEEEEEecchhHhhhhhcCCceEEeehhhccCC
Confidence 34455666778899999999999999999888876433 222222 3577788899999999999999999998875433
Q ss_pred EE-----Eee--ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCC
Q 043172 386 IG-----TLK--MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRT 423 (564)
Q Consensus 386 ~~-----~~~--~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~ 423 (564)
-. .+. |...|++++|++++..|++|...|.|.+-.+.+
T Consensus 111 ~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 111 RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 21 111 677899999999999999999999999988876
No 343
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.22 E-value=0.0025 Score=67.17 Aligned_cols=256 Identities=12% Similarity=0.089 Sum_probs=138.6
Q ss_pred eeecccCCCC-C-CCCeeEEEEcCCCCEEEEE-eCCC----cEEEEEecCCCCceeE-EEEeCCcCeEEEEEeeCCCEEE
Q 043172 251 RLIDANADES-S-TGPINSVQFHRNAQLLLVA-GLDR----RLRFFQIDGKRNTKIQ-SIFLEDCPVRKASFLPDGSQAI 322 (564)
Q Consensus 251 rl~~~~~~~~-h-~~~V~~l~fspdg~~l~s~-s~dg----~I~lwd~~~~~~~~~~-~~~~~~~~I~~l~fspdg~~l~ 322 (564)
.+.|.+.... + .-.+..+++||+|++||.+ +..| +|+++|+.++ ..+. .+.. .....+.|.++++.|+
T Consensus 110 vllD~n~l~~~~~~~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg--~~l~d~i~~--~~~~~~~W~~d~~~~~ 185 (414)
T PF02897_consen 110 VLLDPNELAKDGGYVSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG--KFLPDGIEN--PKFSSVSWSDDGKGFF 185 (414)
T ss_dssp EEEEGGGGSTTSS-EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTT--EEEEEEEEE--EESEEEEECTTSSEEE
T ss_pred EEEcchHhhccCceEEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCC--cCcCCcccc--cccceEEEeCCCCEEE
Confidence 3445554432 3 2344568899999988866 3333 5889998754 2332 2221 1223499999998887
Q ss_pred EEeCC-----------CeEEEEECCCCceeeeccccccCCcc-eEEEEEcCCCCEEEEEeC---C-CeEEEEECCCC---
Q 043172 323 IAGRR-----------KFFYSLDLVKAKADKIGPLVGREEKS-LEFFEVSPDSSVIAFVGN---E-GYILLVSSKTK--- 383 (564)
Q Consensus 323 s~~~d-----------g~i~iwdl~~~~~~~~~~~~~~~~~~-v~~~~~spdg~~la~~~~---d-g~I~lwd~~t~--- 383 (564)
....+ ..|+.|.+.+....-..-+....... ...+..++++++|++... + ..|++.++..+
T Consensus 186 y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~ 265 (414)
T PF02897_consen 186 YTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSP 265 (414)
T ss_dssp EEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTS
T ss_pred EEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCC
Confidence 77532 34788888877543111122222223 567889999999876543 2 46888898875
Q ss_pred --cEEEEeeecCcEEEEEEecCCCEEEEEeC---CCeEEEEECCCCce---eEEEeecC-CcceEEEEECCCCCEEEEE-
Q 043172 384 --ELIGTLKMNGTVRSLAFADDGKQLLSSGG---DGQVYHWDLRTRTC---IHRAVDEG-CINGTALCTSPDGTFFAAG- 453 (564)
Q Consensus 384 --~~~~~~~~~~~V~~l~~spdg~~l~s~s~---dg~V~lwD~~~~~~---~~~~~~~~-~~~i~~l~~sp~g~~lasg- 453 (564)
.+.........+....-+..+.+++.... ++.|...++..... ...+..+. ...+..+.. .+.+|+..
T Consensus 266 ~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~ 343 (414)
T PF02897_consen 266 DAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSY 343 (414)
T ss_dssp S-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEE
T ss_pred cCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEE
Confidence 44444443444443333334444444432 46788888887652 21233222 223444444 44455544
Q ss_pred eCCC--cEEEEeCC-cccCCcceeeEEcc-ccccceeEEEEcCCCcEEE--EEecCCCCeEEEEEcCCCce
Q 043172 454 SDSG--IVNVYNRQ-EFLGGKRKPIKTIE-NLTTKVDFMKFNNDAQILA--ICSTMKKNSLKLIHIPSYNV 518 (564)
Q Consensus 454 s~dg--~V~iwd~~-~~~~~~~~~~~~~~-~~~~~I~~l~fspdg~~La--~~s~~~d~~I~lwdl~s~~~ 518 (564)
..++ .|.+|++. . .....+. ...+.|..+...+++..+. ..|.....++..||+.+++.
T Consensus 344 ~~~~~~~l~v~~~~~~------~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 344 RENGSSRLRVYDLDDG------KESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EETTEEEEEEEETT-T------EEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred EECCccEEEEEECCCC------cEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 4443 58889988 4 2333332 2234456666556555443 33433356788888887764
No 344
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=98.18 E-value=0.0095 Score=59.20 Aligned_cols=281 Identities=16% Similarity=0.180 Sum_probs=125.9
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeC---CcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCC
Q 043172 262 TGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLE---DCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKA 338 (564)
Q Consensus 262 ~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~---~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~ 338 (564)
..++..|.|.....-+++| ..+.| +-..+++..=........ .....++.|.. ....+++..+.| +.....|
T Consensus 16 ~~~l~dV~F~d~~~G~~VG-~~g~i-l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~--~~g~ivG~~g~l-l~T~DgG 90 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVG-AYGTI-LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDG--NEGWIVGEPGLL-LHTTDGG 90 (302)
T ss_dssp SS-EEEEEESSSS-EEEEE-TTTEE-EEESSTTSS-EE-----S-----EEEEEEEET--TEEEEEEETTEE-EEESSTT
T ss_pred CCceEEEEEecCCEEEEEe-cCCEE-EEECCCCccccccccCCCccceeeEEEEEecC--CceEEEcCCceE-EEecCCC
Confidence 4589999999555555555 45544 223333321111111111 22456777753 334445555543 3333344
Q ss_pred ce-eeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEeCCCeE
Q 043172 339 KA-DKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQV 416 (564)
Q Consensus 339 ~~-~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~V 416 (564)
+. .++. +...-......+....++ .+..++..|.|+.=.=....+..... ..+.+..+.-+++|+++++++.-..+
T Consensus 91 ~tW~~v~-l~~~lpgs~~~i~~l~~~-~~~l~~~~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~ 168 (302)
T PF14870_consen 91 KTWERVP-LSSKLPGSPFGITALGDG-SAELAGDRGAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFY 168 (302)
T ss_dssp SS-EE-----TT-SS-EEEEEEEETT-EEEEEETT--EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEE
T ss_pred CCcEEee-cCCCCCCCeeEEEEcCCC-cEEEEcCCCcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccEE
Confidence 32 2221 111111122233333333 33334455655443222223433333 45778899999999988888665555
Q ss_pred EEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcE
Q 043172 417 YHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQI 496 (564)
Q Consensus 417 ~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~ 496 (564)
.-||.-...- ..........+..+.|+|++.+.+++ ..|.|+.=+.......-.+++..+....-.+..++|.+++..
T Consensus 169 ~s~~~G~~~w-~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~ 246 (302)
T PF14870_consen 169 SSWDPGQTTW-QPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEI 246 (302)
T ss_dssp EEE-TT-SS--EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-E
T ss_pred EEecCCCccc-eEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCE
Confidence 6777643222 22222345578999999998765544 788888776221100001122222223345789999999888
Q ss_pred EEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEE
Q 043172 497 LAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLY 556 (564)
Q Consensus 497 La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw 556 (564)
.|+|+. |.+ +.....++....-+....-...+..+.|.+..+-+|.| .+|.|.-|
T Consensus 247 wa~gg~---G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG-~~G~ll~~ 301 (302)
T PF14870_consen 247 WAVGGS---GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG-QDGVLLRY 301 (302)
T ss_dssp EEEEST---T-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred EEEeCC---ccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEEC-CCcEEEEe
Confidence 887764 433 44455554444332222222557788887665656555 68887665
No 345
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.16 E-value=7.6e-06 Score=54.58 Aligned_cols=38 Identities=11% Similarity=0.144 Sum_probs=35.6
Q ss_pred ceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEE
Q 043172 297 TKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLD 334 (564)
Q Consensus 297 ~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwd 334 (564)
.++..+.+|..+|.+++|+|++++|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 36778999999999999999999999999999999997
No 346
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.15 E-value=7.2e-06 Score=54.71 Aligned_cols=38 Identities=16% Similarity=0.362 Sum_probs=36.3
Q ss_pred eeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEE
Q 043172 473 KPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIH 512 (564)
Q Consensus 473 ~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwd 512 (564)
+++.++.+|..+|++|+|+|++.+|++++. |+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~--D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSS--DGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEET--TSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCC--CCEEEEEC
Confidence 678899999999999999999999999999 99999997
No 347
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.15 E-value=5.6e-05 Score=83.38 Aligned_cols=142 Identities=18% Similarity=0.235 Sum_probs=99.1
Q ss_pred CCEEEEE-eCCCeEEEEECCCCcEEEEeeec--CcEEEEEEec-----CCCEEEEEeCCCeEEEEECCCCc--eeEEEe-
Q 043172 363 SSVIAFV-GNEGYILLVSSKTKELIGTLKMN--GTVRSLAFAD-----DGKQLLSSGGDGQVYHWDLRTRT--CIHRAV- 431 (564)
Q Consensus 363 g~~la~~-~~dg~I~lwd~~t~~~~~~~~~~--~~V~~l~~sp-----dg~~l~s~s~dg~V~lwD~~~~~--~~~~~~- 431 (564)
.++|+.- .....|+-.|+..|+.+...... .+|.+++-.. .....++|-.+..++.||+|-.. ++....
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 3444443 24578999999999999999833 3355543321 12345566677889999998643 221111
Q ss_pred -ecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEE
Q 043172 432 -DEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKL 510 (564)
Q Consensus 432 -~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~l 510 (564)
-......+|++-+.+| +||+|+.+|.|++||.-.. +.-..+.+...+|.+|..+.||++|++.+ +..|.|
T Consensus 573 ~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~-----~AKT~lp~lG~pI~~iDvt~DGkwilaTc---~tyLlL 643 (794)
T PF08553_consen 573 QYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGK-----RAKTALPGLGDPIIGIDVTADGKWILATC---KTYLLL 643 (794)
T ss_pred ccccCCCceEEEecCCc-eEEEEeCCCcEEeecccch-----hhhhcCCCCCCCeeEEEecCCCcEEEEee---cceEEE
Confidence 1223356788777766 8999999999999995432 34445678889999999999999998887 578888
Q ss_pred EEc
Q 043172 511 IHI 513 (564)
Q Consensus 511 wdl 513 (564)
++.
T Consensus 644 i~t 646 (794)
T PF08553_consen 644 IDT 646 (794)
T ss_pred EEE
Confidence 886
No 348
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.13 E-value=0.00051 Score=65.37 Aligned_cols=235 Identities=18% Similarity=0.207 Sum_probs=137.5
Q ss_pred eEEEEEeeCC-CEEEEEeCCC-eEEEEECCCCceeeecc-ccccCCcceEEEEEcCCCCEEEEEeCC-----CeEEEEEC
Q 043172 309 VRKASFLPDG-SQAIIAGRRK-FFYSLDLVKAKADKIGP-LVGREEKSLEFFEVSPDSSVIAFVGNE-----GYILLVSS 380 (564)
Q Consensus 309 I~~l~fspdg-~~l~s~~~dg-~i~iwdl~~~~~~~~~~-~~~~~~~~v~~~~~spdg~~la~~~~d-----g~I~lwd~ 380 (564)
...++|+|.. ..++.+-+-| ...++|..+.+...+.. ..+.+ -.-.-.|||+|.+|+..-+| |.|-|||.
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RH--fyGHGvfs~dG~~LYATEndfd~~rGViGvYd~ 147 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRH--FYGHGVFSPDGRLLYATENDFDPNRGVIGVYDA 147 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCce--eecccccCCCCcEEEeecCCCCCCCceEEEEec
Confidence 3467788743 4455555444 46788988876543321 11111 12345789999999886543 88999998
Q ss_pred CCC-cEEEEee-ecCcEEEEEEecCCCEEEEEeC------------------CCeEEEEECCCCceeEEEeec---CCcc
Q 043172 381 KTK-ELIGTLK-MNGTVRSLAFADDGKQLLSSGG------------------DGQVYHWDLRTRTCIHRAVDE---GCIN 437 (564)
Q Consensus 381 ~t~-~~~~~~~-~~~~V~~l~~spdg~~l~s~s~------------------dg~V~lwD~~~~~~~~~~~~~---~~~~ 437 (564)
+.+ +.+..+. |.-....+.|.+||+.|++++. .-++.+.|..++..+.+.... ....
T Consensus 148 r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lS 227 (366)
T COG3490 148 REGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLS 227 (366)
T ss_pred ccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcc
Confidence 743 3444554 5556788999999999988753 113444555555554433322 3345
Q ss_pred eEEEEECCCCCEEEEEeCCCcEE-----EEeCCcccCCcceeeEEcc-------ccccceeEEEEcCCCcEEEEEecCCC
Q 043172 438 GTALCTSPDGTFFAAGSDSGIVN-----VYNRQEFLGGKRKPIKTIE-------NLTTKVDFMKFNNDAQILAICSTMKK 505 (564)
Q Consensus 438 i~~l~~sp~g~~lasgs~dg~V~-----iwd~~~~~~~~~~~~~~~~-------~~~~~I~~l~fspdg~~La~~s~~~d 505 (564)
+..++..++|..++.+-..|.-+ |=-... .+++..+. .....|-+|+.+.+..+++..|-. .
T Consensus 228 iRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~-----g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~-G 301 (366)
T COG3490 228 IRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRK-----GEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPR-G 301 (366)
T ss_pred eeeeeeCCCCcEEEEEEeeCCCccCCcceeeccC-----CCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCC-C
Confidence 67778888876544332222100 000011 13333222 233567788888777777666653 6
Q ss_pred CeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEc
Q 043172 506 NSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKL 558 (564)
Q Consensus 506 ~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l 558 (564)
+...+||..++.++..-+... +..++ +...-+++.+.+|.+.++.-
T Consensus 302 N~~vi~da~tG~vv~~a~l~d-----aaGva--~~~~gf~vssg~G~~~~~s~ 347 (366)
T COG3490 302 NRAVIWDAATGAVVSEAALPD-----AAGVA--AAKGGFAVSSGQGRIIFYSR 347 (366)
T ss_pred CeEEEEEcCCCcEEecccccc-----cccce--eccCceEEecCCceEEeccc
Confidence 788999999999887543321 22222 23333556667888886643
No 349
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.12 E-value=0.0016 Score=66.12 Aligned_cols=217 Identities=16% Similarity=0.173 Sum_probs=124.5
Q ss_pred eEEEEECCCCceeeeccccccCC-cceEEEEEcCC----CCEEEEEeC---------C-CeEEEEECCCC-----c--EE
Q 043172 329 FFYSLDLVKAKADKIGPLVGREE-KSLEFFEVSPD----SSVIAFVGN---------E-GYILLVSSKTK-----E--LI 386 (564)
Q Consensus 329 ~i~iwdl~~~~~~~~~~~~~~~~-~~v~~~~~spd----g~~la~~~~---------d-g~I~lwd~~t~-----~--~~ 386 (564)
.|++.|..+........+...+. ..+..+.+..+ ..+|++|+. . |.|.++++... + .+
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 57777777776654444443332 12223333332 467776653 2 89999999884 2 22
Q ss_pred EEeeecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCc-eeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 043172 387 GTLKMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRT-CIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQ 465 (564)
Q Consensus 387 ~~~~~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~ 465 (564)
......++|++++-. +++ |+++. .+.|++|++...+ ....-.......++++... +.+|++|..-..|.++..+
T Consensus 83 ~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~ 157 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYD 157 (321)
T ss_dssp EEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEE
T ss_pred EEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEE
Confidence 333478999999877 444 44443 4789999998877 5554444444466666654 5599999988888888554
Q ss_pred cccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCc--------eeccCCCCCCCCCCcEEE--
Q 043172 466 EFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYN--------VFSNWPPANRNLQYPRCL-- 535 (564)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~--------~~~~~~~~~~~~~~V~~l-- 535 (564)
.. ......+.. .....+++++.|-+++..++++.. +|.|.++..+... .+...... .....|+++
T Consensus 158 ~~-~~~l~~va~-d~~~~~v~~~~~l~d~~~~i~~D~--~gnl~~l~~~~~~~~~~~~~~~L~~~~~f-~lg~~v~~~~~ 232 (321)
T PF03178_consen 158 EE-NNKLILVAR-DYQPRWVTAAEFLVDEDTIIVGDK--DGNLFVLRYNPEIPNSRDGDPKLERISSF-HLGDIVNSFRR 232 (321)
T ss_dssp TT-TE-EEEEEE-ESS-BEEEEEEEE-SSSEEEEEET--TSEEEEEEE-SS-SSTTTTTTBEEEEEEE-E-SS-EEEEEE
T ss_pred cc-CCEEEEEEe-cCCCccEEEEEEecCCcEEEEEcC--CCeEEEEEECCCCcccccccccceeEEEE-ECCCccceEEE
Confidence 31 001122222 234567889999877777777776 8999999886321 11100000 011446666
Q ss_pred -EEeC--CCC------EEEEEcCCCeEEE
Q 043172 536 -DFSP--GGG------FMAVGNAAGKVFL 555 (564)
Q Consensus 536 -~fsp--dg~------~Lasgs~dG~V~l 555 (564)
++.| .+. .++.++.+|.|.+
T Consensus 233 ~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 233 GSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp --SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred EEeeecCCCCcccccceEEEEecCCEEEE
Confidence 4445 222 4777888998873
No 350
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.12 E-value=0.0047 Score=64.76 Aligned_cols=206 Identities=15% Similarity=0.153 Sum_probs=109.5
Q ss_pred cEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccc-cccCCcceEE----EEE
Q 043172 285 RLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPL-VGREEKSLEF----FEV 359 (564)
Q Consensus 285 ~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~-~~~~~~~v~~----~~~ 359 (564)
.|.||+..+. ++.++.-..+.|.++.|+.+ ..|++...+|.+++||+.... ..... .-.....+.+ ..+
T Consensus 62 ~I~iys~sG~---ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~--~fsl~~~i~~~~v~e~~i~~~~~ 135 (410)
T PF04841_consen 62 SIQIYSSSGK---LLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEF--QFSLGEEIEEEKVLECRIFAIWF 135 (410)
T ss_pred EEEEECCCCC---EeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCCce--eechhhhccccCccccccccccc
Confidence 4888877654 66667666689999999875 566667789999999987433 11100 0001111111 222
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCc-EEEEee-ecCcEEE----------EEEecCCCEEEEEeCCCeEEEEECCCCcee
Q 043172 360 SPDSSVIAFVGNEGYILLVSSKTKE-LIGTLK-MNGTVRS----------LAFADDGKQLLSSGGDGQVYHWDLRTRTCI 427 (564)
Q Consensus 360 spdg~~la~~~~dg~I~lwd~~t~~-~~~~~~-~~~~V~~----------l~~spdg~~l~s~s~dg~V~lwD~~~~~~~ 427 (564)
..+| .++. ..++.+.+..--... ....+. ....... ..++.+....+....++.+++.+-.....
T Consensus 136 ~~~G-ivvL-t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~- 212 (410)
T PF04841_consen 136 YKNG-IVVL-TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ- 212 (410)
T ss_pred CCCC-EEEE-CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc-
Confidence 3344 3333 334555554332221 111111 0110110 22333444444444445555444322111
Q ss_pred EEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccc-cccceeEEEEcCCCcEEEEEecCCCC
Q 043172 428 HRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIEN-LTTKVDFMKFNNDAQILAICSTMKKN 506 (564)
Q Consensus 428 ~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~-~~~~I~~l~fspdg~~La~~s~~~d~ 506 (564)
+. ...++..|++||+|++||.-..+|.+.|....-. +.+..+.. .......+.|.-+...++.- ..
T Consensus 213 --i~--~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~-----~~~~e~~~~~~~~p~~~~WCG~dav~l~~----~~ 279 (410)
T PF04841_consen 213 --ID--SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS-----EKLCEFDTDSKSPPKQMAWCGNDAVVLSW----ED 279 (410)
T ss_pred --cc--CCCCeEEEEECCCCCEEEEEECCCCEEEEECccc-----ceeEEeecCcCCCCcEEEEECCCcEEEEe----CC
Confidence 11 1236899999999999999999999999886543 44444432 23456778887665433322 24
Q ss_pred eEEEEE
Q 043172 507 SLKLIH 512 (564)
Q Consensus 507 ~I~lwd 512 (564)
.|.++.
T Consensus 280 ~l~lvg 285 (410)
T PF04841_consen 280 ELLLVG 285 (410)
T ss_pred EEEEEC
Confidence 555554
No 351
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.11 E-value=0.0025 Score=61.53 Aligned_cols=196 Identities=12% Similarity=0.192 Sum_probs=108.6
Q ss_pred CCCeeEEEEcCCCC-EEEEEeCCCcEEEEEecCCCCceeEEEEeCC-cCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCc
Q 043172 262 TGPINSVQFHRNAQ-LLLVAGLDRRLRFFQIDGKRNTKIQSIFLED-CPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAK 339 (564)
Q Consensus 262 ~~~V~~l~fspdg~-~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~-~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~ 339 (564)
...|+.|+|+|+.. ++++....+.|..++.+ +..+..+.... +-.-.+++..++.++++.-+++.+.++++....
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~---G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~ 97 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLD---GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDT 97 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEETT-----EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcCC---CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccc
Confidence 34599999999765 55555556666555543 34666666543 457788998777777766678999999884321
Q ss_pred ----eee---e-ccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCC---CcEEEEee---------ecCcEEEEE
Q 043172 340 ----ADK---I-GPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKT---KELIGTLK---------MNGTVRSLA 399 (564)
Q Consensus 340 ----~~~---~-~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t---~~~~~~~~---------~~~~V~~l~ 399 (564)
... + ..+.......+..++|.|.++.|+++-...-..||.+.. ...+.... .-..+.+++
T Consensus 98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~ 177 (248)
T PF06977_consen 98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLS 177 (248)
T ss_dssp TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEE
T ss_pred cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceE
Confidence 111 1 112222334699999999988888777665555555543 22221111 224578999
Q ss_pred EecC-CCEEEEEeCCCeEEEEECCCCceeEEEeecCC--------cceEEEEECCCCCEEEEEeCCCcEEEE
Q 043172 400 FADD-GKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGC--------INGTALCTSPDGTFFAAGSDSGIVNVY 462 (564)
Q Consensus 400 ~spd-g~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~--------~~i~~l~~sp~g~~lasgs~dg~V~iw 462 (564)
++|. +.+++....+..|.++| .+++.+..+..... ...-.|+|.++|++.++ ++-...++|
T Consensus 178 ~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 178 YDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp EETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred EcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 9995 45666666678899999 56777665554331 23578999999865544 455455444
No 352
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.10 E-value=0.00075 Score=70.88 Aligned_cols=219 Identities=12% Similarity=0.116 Sum_probs=115.6
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEE-ECCCCce
Q 043172 262 TGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSL-DLVKAKA 340 (564)
Q Consensus 262 ~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iw-dl~~~~~ 340 (564)
.-....|+++|+|+++++++ +|...||.....+ . .. .+.-..++|.+.+ .+|+-...+.|.|+ ++.....
T Consensus 32 ~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r--~--k~---~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~ 102 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWR--N--KA---FGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVV 102 (443)
T ss_dssp SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTE--E--EE---EEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT
T ss_pred CcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCc--c--cc---cCceeEEEEecCc-cEEEEECCCeEEEEEcCccccc
Confidence 34588999999999999865 7888888632211 1 11 1334578898855 56666667888886 3322221
Q ss_pred eeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEEeCCCeEEEEE
Q 043172 341 DKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSGGDGQVYHWD 420 (564)
Q Consensus 341 ~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s~dg~V~lwD 420 (564)
+ .+.... .+..+-. |.+|+..+. +.|.+||+.+++.+..+.... |..+.|+++|.+++..+.+ .+++++
T Consensus 103 -k--~i~~~~--~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~-~i~il~ 171 (443)
T PF04053_consen 103 -K--SIKLPF--SVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKD-SIYILK 171 (443)
T ss_dssp --------SS---EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S--SEEEEE
T ss_pred -e--EEcCCc--ccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCC-eEEEEE
Confidence 1 111111 2333333 777777765 489999999999999987554 8999999999999988765 688877
Q ss_pred CCCC-----------ceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEE
Q 043172 421 LRTR-----------TCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMK 489 (564)
Q Consensus 421 ~~~~-----------~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~ 489 (564)
.... .....+. +-...|.+.+|..+ .|+-.+.. .++.+ -.+ ...++.....++.=+.
T Consensus 172 ~~~~~~~~~~~~g~e~~f~~~~-E~~~~IkSg~W~~d--~fiYtT~~-~lkYl--~~G------e~~~i~~ld~~~yllg 239 (443)
T PF04053_consen 172 YNLEAVAAIPEEGVEDAFELIH-EISERIKSGCWVED--CFIYTTSN-HLKYL--VNG------ETGIIAHLDKPLYLLG 239 (443)
T ss_dssp E-HHHHHHBTTTB-GGGEEEEE-EE-S--SEEEEETT--EEEEE-TT-EEEEE--ETT------EEEEEEE-SS--EEEE
T ss_pred ecchhcccccccCchhceEEEE-EecceeEEEEEEcC--EEEEEcCC-eEEEE--EcC------CcceEEEcCCceEEEE
Confidence 6533 0122222 21346778888755 44444444 66652 221 2223333345667777
Q ss_pred EcCCCcEEEEEecCCCCeEEEEEcC
Q 043172 490 FNNDAQILAICSTMKKNSLKLIHIP 514 (564)
Q Consensus 490 fspdg~~La~~s~~~d~~I~lwdl~ 514 (564)
+.|....|..... ++.|..+.++
T Consensus 240 y~~~~~~ly~~Dr--~~~v~~~~ld 262 (443)
T PF04053_consen 240 YLPKENRLYLIDR--DGNVISYELD 262 (443)
T ss_dssp EETTTTEEEEE-T--T--EEEEE--
T ss_pred EEccCCEEEEEEC--CCCEEEEEEC
Confidence 7776667776666 7777777664
No 353
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.10 E-value=0.00086 Score=69.09 Aligned_cols=232 Identities=16% Similarity=0.140 Sum_probs=130.1
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEe-------C---------CcCeEEEEEeeCCCEEEEEe
Q 043172 262 TGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFL-------E---------DCPVRKASFLPDGSQAIIAG 325 (564)
Q Consensus 262 ~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~-------~---------~~~I~~l~fspdg~~l~s~~ 325 (564)
...+....|||+|+.++... ++.|.+++..++....+.. .+ - -..-..+.|||||++|+...
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~-dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~ 119 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTT-DGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR 119 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES---TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEecc-ccceeEEcCccceeccccccccccceEECCCCCEEEEEE
Confidence 56899999999999998885 6789998775442111111 11 0 11235688999999998864
Q ss_pred CCC------------------------------------eEEEEECCCCceeeeccc--cccCCcceEEEEEcCCCCEEE
Q 043172 326 RRK------------------------------------FFYSLDLVKAKADKIGPL--VGREEKSLEFFEVSPDSSVIA 367 (564)
Q Consensus 326 ~dg------------------------------------~i~iwdl~~~~~~~~~~~--~~~~~~~v~~~~~spdg~~la 367 (564)
.|. .+.|+++.+++...+... .......+..+.|++++..|+
T Consensus 120 ~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~ 199 (353)
T PF00930_consen 120 FDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLW 199 (353)
T ss_dssp EE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEE
T ss_pred ECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEE
Confidence 221 144566666654322211 012234688899999998444
Q ss_pred EEeC--C---CeEEEEECCCCcEEEEee--ecCcE---EEEEEe-cCCC-EEEEEeCCC--eEEEEECCCCceeEEEeec
Q 043172 368 FVGN--E---GYILLVSSKTKELIGTLK--MNGTV---RSLAFA-DDGK-QLLSSGGDG--QVYHWDLRTRTCIHRAVDE 433 (564)
Q Consensus 368 ~~~~--d---g~I~lwd~~t~~~~~~~~--~~~~V---~~l~~s-pdg~-~l~s~s~dg--~V~lwD~~~~~~~~~~~~~ 433 (564)
+.-. + ..+.++|..++.....+. ..+.| ..+.|. +++. +|.....+| .|++++...+.. ..+ ..
T Consensus 200 ~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~-~~l-T~ 277 (353)
T PF00930_consen 200 VQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP-RQL-TS 277 (353)
T ss_dssp EEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE-EES-S-
T ss_pred EEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccce-ecc-cc
Confidence 4322 2 457778887776544443 23322 355555 6555 444445565 567777766553 333 34
Q ss_pred CCcceE-EEEECCCCCEEE-EEeCC--C--cEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEec
Q 043172 434 GCINGT-ALCTSPDGTFFA-AGSDS--G--IVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICST 502 (564)
Q Consensus 434 ~~~~i~-~l~~sp~g~~la-sgs~d--g--~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~ 502 (564)
+...|+ .+.++++++.|+ ++..+ + .|...++... ..+..+.........+.|||+|++++....
T Consensus 278 G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~-----~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 278 GDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG-----GEPKCLTCEDGDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET-----TEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred CceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC-----CCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence 444554 467888877554 44432 2 3444455511 334444433333368999999999886654
No 354
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.05 E-value=0.0031 Score=67.88 Aligned_cols=231 Identities=12% Similarity=0.108 Sum_probs=131.9
Q ss_pred CEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcC-----eE-EEEEeeCCCEEEEEe---------CCCeEEEEECCCCc
Q 043172 275 QLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCP-----VR-KASFLPDGSQAIIAG---------RRKFFYSLDLVKAK 339 (564)
Q Consensus 275 ~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~-----I~-~l~fspdg~~l~s~~---------~dg~i~iwdl~~~~ 339 (564)
..++.++.++.|.-+|..++ ..+-........ +. +..+. +..+++++ .++.++.+|..+|+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG--~~~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~ 186 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETG--KQVWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGK 186 (488)
T ss_pred CeEEEecCCCeEEEEECCCC--CEeeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCc
Confidence 57777778898888887643 343333222110 11 11121 24555553 36789999999988
Q ss_pred eeeeccccccC-----------------Ccce-EEEEEcCCCCEEEEEeCCC------------------eEEEEECCCC
Q 043172 340 ADKIGPLVGRE-----------------EKSL-EFFEVSPDSSVIAFVGNEG------------------YILLVSSKTK 383 (564)
Q Consensus 340 ~~~~~~~~~~~-----------------~~~v-~~~~~spdg~~la~~~~dg------------------~I~lwd~~t~ 383 (564)
..-........ ...+ ...++.+.+..+++++.++ .|.-+|+.++
T Consensus 187 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG 266 (488)
T cd00216 187 LLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTG 266 (488)
T ss_pred eeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCC
Confidence 64332221110 0001 1234555567777776554 7999999999
Q ss_pred cEEEEeeecC-cE------EEEEEe----cCCC---EEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCE
Q 043172 384 ELIGTLKMNG-TV------RSLAFA----DDGK---QLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTF 449 (564)
Q Consensus 384 ~~~~~~~~~~-~V------~~l~~s----pdg~---~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~ 449 (564)
+.+..+.... .. ....+. -++. .+++++.+|.++.+|..+++.+-...... ..++.+| ..
T Consensus 267 ~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~----~~~~~~~--~~ 340 (488)
T cd00216 267 KVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE----QPMAYDP--GL 340 (488)
T ss_pred CEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec----cccccCC--ce
Confidence 9988775211 01 111111 1333 57788889999999999999886654321 1223334 22
Q ss_pred EEEE------------------eCCCcEEEEeCCcccCCcceeeEEccccc--------cce--eEEEEcCCCcEEEEEe
Q 043172 450 FAAG------------------SDSGIVNVYNRQEFLGGKRKPIKTIENLT--------TKV--DFMKFNNDAQILAICS 501 (564)
Q Consensus 450 lasg------------------s~dg~V~iwd~~~~~~~~~~~~~~~~~~~--------~~I--~~l~fspdg~~La~~s 501 (564)
++++ ..+|.|.-+|+.++ +.+-...... .+. ..+. ..+.+|++++
T Consensus 341 vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG-----~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~ 413 (488)
T cd00216 341 VYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTG-----KVVWEKREGTIRDSWNIGFPHWGGSLA--TAGNLVFAGA 413 (488)
T ss_pred EEEccccccccCcccccCCCCCCCceEEEEEeCCCC-----cEeeEeeCCccccccccCCcccCcceE--ecCCeEEEEC
Confidence 2222 13566777777766 4444333210 111 1122 2457788888
Q ss_pred cCCCCeEEEEEcCCCceeccCCC
Q 043172 502 TMKKNSLKLIHIPSYNVFSNWPP 524 (564)
Q Consensus 502 ~~~d~~I~lwdl~s~~~~~~~~~ 524 (564)
. ++.|+.+|..+++.+-.++.
T Consensus 414 ~--dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 414 A--DGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred C--CCeEEEEECCCCceeeEEEC
Confidence 7 89999999999988766544
No 355
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.02 E-value=0.0028 Score=63.37 Aligned_cols=221 Identities=18% Similarity=0.130 Sum_probs=132.3
Q ss_pred EEcCCCCE-EEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCce-eeeccc
Q 043172 269 QFHRNAQL-LLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKA-DKIGPL 346 (564)
Q Consensus 269 ~fspdg~~-l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~-~~~~~~ 346 (564)
.|.|+... +.+--..+.|.-|+...+ ....+. ....+.++..-..+..|+++.. -+++++..++.. ..+...
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g---~~~~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~ 104 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETG---KKRVFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEP 104 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcC---ceEEEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccc
Confidence 46676664 444445778888877533 223333 3334455544444556665543 366777665554 222222
Q ss_pred -cccCCcceEEEEEcCCCCEEEEEeC-----------CCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEeC-
Q 043172 347 -VGREEKSLEFFEVSPDSSVIAFVGN-----------EGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGG- 412 (564)
Q Consensus 347 -~~~~~~~v~~~~~spdg~~la~~~~-----------dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~- 412 (564)
.+......+...+.|+|.+.+.... -|.|+.++. .+..+..+. +-...+.|+||||++.|+.+-.
T Consensus 105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~ 183 (307)
T COG3386 105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTP 183 (307)
T ss_pred cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCC
Confidence 2333345667888999987765443 145666664 455555444 3456689999999988887755
Q ss_pred CCeEEEEECCC--C----ceeEEEeecCCcceEEEEECCCCCEEEEEeCCC-cEEEEeCCcccCCcceeeEEccccccce
Q 043172 413 DGQVYHWDLRT--R----TCIHRAVDEGCINGTALCTSPDGTFFAAGSDSG-IVNVYNRQEFLGGKRKPIKTIENLTTKV 485 (564)
Q Consensus 413 dg~V~lwD~~~--~----~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg-~V~iwd~~~~~~~~~~~~~~~~~~~~~I 485 (564)
.+.|+-|++.. + +....+........-.++...+|.+.+++...| .|.+|+.. + +++..+.-....+
T Consensus 184 ~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G-----~l~~~i~lP~~~~ 257 (307)
T COG3386 184 ANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-G-----KLLGEIKLPVKRP 257 (307)
T ss_pred CCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-C-----cEEEEEECCCCCC
Confidence 47888887752 1 111111111122334667778888765554444 89999988 5 7888777666788
Q ss_pred eEEEEc-CCCcEEEEEec
Q 043172 486 DFMKFN-NDAQILAICST 502 (564)
Q Consensus 486 ~~l~fs-pdg~~La~~s~ 502 (564)
++++|- |+.+.|++.+.
T Consensus 258 t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 258 TNPAFGGPDLNTLYITSA 275 (307)
T ss_pred ccceEeCCCcCEEEEEec
Confidence 888885 45666666665
No 356
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.01 E-value=0.007 Score=59.84 Aligned_cols=230 Identities=17% Similarity=0.207 Sum_probs=133.8
Q ss_pred CCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeecc------
Q 043172 272 RNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGP------ 345 (564)
Q Consensus 272 pdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~------ 345 (564)
..++.|+.|..+| |.++++... ....... +..+|..+...|+-+.|++-+ ++.++++++..-.......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~-~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDP-SKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCC-ccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccc
Confidence 3578899998888 899988321 1122222 233499999999877777665 5999999987654332110
Q ss_pred -----ccccCCcceEEEE--EcCCCCEEEEEeCCCeEEEEECCCC-----cEEEEeeecCcEEEEEEecCCCEEEEEeCC
Q 043172 346 -----LVGREEKSLEFFE--VSPDSSVIAFVGNEGYILLVSSKTK-----ELIGTLKMNGTVRSLAFADDGKQLLSSGGD 413 (564)
Q Consensus 346 -----~~~~~~~~v~~~~--~spdg~~la~~~~dg~I~lwd~~t~-----~~~~~~~~~~~V~~l~~spdg~~l~s~s~d 413 (564)
..-...+.+..++ -.+.+...+++.....|.+|..... .....+.....+.+++|. ++.|++|..+
T Consensus 80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~ 157 (275)
T PF00780_consen 80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSK 157 (275)
T ss_pred cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCC
Confidence 0111113455555 2223333333444458888877543 455666678999999999 5567777654
Q ss_pred CeEEEEECCCCceeEEEeecC-----------CcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeE--Eccc
Q 043172 414 GQVYHWDLRTRTCIHRAVDEG-----------CINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIK--TIEN 480 (564)
Q Consensus 414 g~V~lwD~~~~~~~~~~~~~~-----------~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~--~~~~ 480 (564)
...+.|+.++.....+.... ..++..+.+ +++.+|++. +..-.+.+... .+.+ .+.-
T Consensus 158 -~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~~G------~~~r~~~i~W 227 (275)
T PF00780_consen 158 -GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNKNG------EPSRKSTIQW 227 (275)
T ss_pred -ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcCCC------CcCcccEEEc
Confidence 58889999766544332111 112223333 345566543 22333444433 2222 2221
Q ss_pred cccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCC
Q 043172 481 LTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPP 524 (564)
Q Consensus 481 ~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~ 524 (564)
...+.++++. ..||++.+ ++.|.||++.+++.++.++.
T Consensus 228 -~~~p~~~~~~--~pyli~~~---~~~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 228 -SSAPQSVAYS--SPYLIAFS---SNSIEVRSLETGELVQTIPL 265 (275)
T ss_pred -CCchhEEEEE--CCEEEEEC---CCEEEEEECcCCcEEEEEEC
Confidence 2345556663 34776655 46799999999988776653
No 357
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.97 E-value=2.8e-06 Score=88.24 Aligned_cols=199 Identities=15% Similarity=0.142 Sum_probs=128.8
Q ss_pred ceEEEEEcCC--CCEEEEEeCCCeEEEEECCCCcEE---EEeeecCcEEEEEEec-CCCEEEEEe----CCCeEEEEECC
Q 043172 353 SLEFFEVSPD--SSVIAFVGNEGYILLVSSKTKELI---GTLKMNGTVRSLAFAD-DGKQLLSSG----GDGQVYHWDLR 422 (564)
Q Consensus 353 ~v~~~~~spd--g~~la~~~~dg~I~lwd~~t~~~~---~~~~~~~~V~~l~~sp-dg~~l~s~s----~dg~V~lwD~~ 422 (564)
.+.|+++.-+ ...+++|..+|.|-+..++...-. .+-.+...+++++|++ |.+.|++|- .|..+.|||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 3566666543 347888888999999988754332 2223677899999998 556677663 25679999998
Q ss_pred CC--ceeE--EEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcC-CCcEE
Q 043172 423 TR--TCIH--RAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNN-DAQIL 497 (564)
Q Consensus 423 ~~--~~~~--~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fsp-dg~~L 497 (564)
++ .+.. .+.........++||-.+.+++.+|.....+.++|++.. ......-.+..+..+...| .+.++
T Consensus 138 s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs------~~~~~svnTk~vqG~tVdp~~~nY~ 211 (783)
T KOG1008|consen 138 SLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQS------LDSVSSVNTKYVQGITVDPFSPNYF 211 (783)
T ss_pred cccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhh------hhhhhhhhhhhcccceecCCCCCce
Confidence 76 2221 122212223458899888899999999999999999842 2222222244667788888 67777
Q ss_pred EEEecCCCCeEEEEEc-CCCc-eeccCCC-CCCCCCCcEEEEEeCC--CCEEEEEcCCCeEEEEEcCC
Q 043172 498 AICSTMKKNSLKLIHI-PSYN-VFSNWPP-ANRNLQYPRCLDFSPG--GGFMAVGNAAGKVFLYKLNH 560 (564)
Q Consensus 498 a~~s~~~d~~I~lwdl-~s~~-~~~~~~~-~~~~~~~V~~l~fspd--g~~Lasgs~dG~V~lw~l~~ 560 (564)
++.+ ++.|-+||. ...+ ++..+.. .+.....+..++|+|. |...+.....++|++|++.+
T Consensus 212 cs~~---dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 212 CSNS---DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred eccc---cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 6655 799999993 3222 1221111 1112245889999995 33334445678899999864
No 358
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.97 E-value=0.0012 Score=68.49 Aligned_cols=241 Identities=14% Similarity=0.146 Sum_probs=131.5
Q ss_pred CeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceee--------------------------ecc--------------cc
Q 043172 308 PVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADK--------------------------IGP--------------LV 347 (564)
Q Consensus 308 ~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~--------------------------~~~--------------~~ 347 (564)
.|+.+.|+++...|+++...|.|.||.....+... +.. +.
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 57889999998899999999988887654321110 000 00
Q ss_pred ccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeee---------cCcEEEEEEec-----CC---CEEEEE
Q 043172 348 GREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLKM---------NGTVRSLAFAD-----DG---KQLLSS 410 (564)
Q Consensus 348 ~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~~---------~~~V~~l~~sp-----dg---~~l~s~ 410 (564)
.....+|++++.| +=.++|+|..+|.+.|.|++....+..-.. ...|+++.|.. |+ -.|++|
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 1112478888887 555999999999999999999888876431 23688888873 22 478899
Q ss_pred eCCCeEEEEECCC---CceeEEEee---cCCcceEEEE-ECCC-----------------C---CEEEEEeCCCcEEEEe
Q 043172 411 GGDGQVYHWDLRT---RTCIHRAVD---EGCINGTALC-TSPD-----------------G---TFFAAGSDSGIVNVYN 463 (564)
Q Consensus 411 s~dg~V~lwD~~~---~~~~~~~~~---~~~~~i~~l~-~sp~-----------------g---~~lasgs~dg~V~iwd 463 (564)
+..|.+.+|.+-- +.....+.. .....+..|. ++.+ | ..+++......++|+.
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~ 241 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK 241 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence 9999999998741 222111111 1112233332 2211 1 1233334455799998
Q ss_pred CCcccCCcceeeEEccccccceeEEEEc-----CCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCC-CCCCCcEEEEE
Q 043172 464 RQEFLGGKRKPIKTIENLTTKVDFMKFN-----NDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPAN-RNLQYPRCLDF 537 (564)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~I~~l~fs-----pdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~-~~~~~V~~l~f 537 (564)
.... +..+......-....+.+- ..+..|++-.. +|.|+++.++..+.+....... .....+...+|
T Consensus 242 ~~~~-----k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~--~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssi 314 (395)
T PF08596_consen 242 PPKS-----KGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFN--NGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSI 314 (395)
T ss_dssp TT--------EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEET--TSEEEEEETTT--EEEEEE-SS---HHHHTT-EE
T ss_pred CCCC-----cccceeeccccccceEEEEeecccCCceEEEEEEC--CCcEEEEECCCchHhhcccCCCccccccccccEE
Confidence 8765 4444333222233344442 34556666666 9999999999988776554431 11233556778
Q ss_pred eCCCCEEEEEcCCCeEEEEE
Q 043172 538 SPGGGFMAVGNAAGKVFLYK 557 (564)
Q Consensus 538 spdg~~Lasgs~dG~V~lw~ 557 (564)
+++|..++..+.. .+.++.
T Consensus 315 s~~Gdi~~~~gps-E~~l~s 333 (395)
T PF08596_consen 315 SRNGDIFYWTGPS-EIQLFS 333 (395)
T ss_dssp -TTS-EEEE-SSS-EEEEEE
T ss_pred CCCCCEEEEeCcc-cEEEEE
Confidence 9999987766543 344443
No 359
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.97 E-value=0.013 Score=63.52 Aligned_cols=148 Identities=12% Similarity=0.064 Sum_probs=90.1
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcC--CCCEEEEEeC------CCeEEEEECCCCcEEEEe
Q 043172 318 GSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSP--DSSVIAFVGN------EGYILLVSSKTKELIGTL 389 (564)
Q Consensus 318 g~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~sp--dg~~la~~~~------dg~I~lwd~~t~~~~~~~ 389 (564)
+..|++++.++.++.+|..+|+..-...+..+.. -..+.-+| .+..++++.. +|.|.-+|..+|+.+..+
T Consensus 120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~--~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 120 DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKA--GYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeecccccccc--cccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 4577788889999999999998754333221111 00111122 1234444432 689999999999988765
Q ss_pred ee--cC------------------------------cE-EEEEEecCCCEEEEEeCC-----C-----------eEEEEE
Q 043172 390 KM--NG------------------------------TV-RSLAFADDGKQLLSSGGD-----G-----------QVYHWD 420 (564)
Q Consensus 390 ~~--~~------------------------------~V-~~l~~spdg~~l~s~s~d-----g-----------~V~lwD 420 (564)
.. .. .+ ..+++.|...+|+.+..+ + .|.-.|
T Consensus 198 ~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld 277 (527)
T TIGR03075 198 YTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARD 277 (527)
T ss_pred cCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEc
Confidence 51 11 01 123555555566665422 2 677889
Q ss_pred CCCCceeEEEeecCC--------cceEEEEECCCCC---EEEEEeCCCcEEEEeCCcc
Q 043172 421 LRTRTCIHRAVDEGC--------INGTALCTSPDGT---FFAAGSDSGIVNVYNRQEF 467 (564)
Q Consensus 421 ~~~~~~~~~~~~~~~--------~~i~~l~~sp~g~---~lasgs~dg~V~iwd~~~~ 467 (564)
+++++..-.++..+. ....-+.+..+|+ .++.+..+|.+++.|..++
T Consensus 278 ~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG 335 (527)
T TIGR03075 278 PDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNG 335 (527)
T ss_pred cccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCC
Confidence 999998766654211 1112233334665 7889999999999999887
No 360
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.96 E-value=0.0027 Score=59.74 Aligned_cols=143 Identities=13% Similarity=0.121 Sum_probs=104.1
Q ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEE
Q 043172 363 SSVIAFVGNEGYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALC 442 (564)
Q Consensus 363 g~~la~~~~dg~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~ 442 (564)
..+++.|+..+.+.-.|..+|..+.......+|.+-+.- -|.+++.|...|.+++.+..++.....+.....+.+ ...
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~-~a~ 100 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKV-RAQ 100 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhcc-ceE
Confidence 456778888899999999999988776666666555544 477899999999999999999988887777665544 345
Q ss_pred ECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcC-CCcEEEEEecCCCCeEEEEEcCC
Q 043172 443 TSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNN-DAQILAICSTMKKNSLKLIHIPS 515 (564)
Q Consensus 443 ~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fsp-dg~~La~~s~~~d~~I~lwdl~s 515 (564)
..+++..+.+|+.|+..+..|.++. ..+...+-..+...+-+..| ++.+. +++. .|.|.-.....
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~-----~cVykskcgG~~f~sP~i~~g~~sly-~a~t--~G~vlavt~~~ 166 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTY-----GCVYKSKCGGGTFVSPVIAPGDGSLY-AAIT--AGAVLAVTKNP 166 (354)
T ss_pred EcCCCceEEEecCCCcEEEeccccc-----ceEEecccCCceeccceecCCCceEE-EEec--cceEEEEccCC
Confidence 6789999999999999999999886 77777664444444555666 44433 3333 34554444433
No 361
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.92 E-value=0.0013 Score=71.66 Aligned_cols=213 Identities=11% Similarity=0.036 Sum_probs=116.8
Q ss_pred CCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEe------CC--CeEEEEECCCCcEEEEeeecCcEEEE
Q 043172 327 RKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVG------NE--GYILLVSSKTKELIGTLKMNGTVRSL 398 (564)
Q Consensus 327 dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~------~d--g~I~lwd~~t~~~~~~~~~~~~V~~l 398 (564)
+|.+.-. ..+....+....+.. ..+...+++|+|+.+++.. .+ ..|.+++. .+.. ..+......+.-
T Consensus 328 ~G~l~~~--~~~~~~pv~g~~g~~-~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~g~~~t~P 402 (591)
T PRK13616 328 DGSLVSV--DGQGVTPVPGAFGQM-GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLEGHSLTRP 402 (591)
T ss_pred CCeEEEe--cCCCeeeCCCccccc-cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeecCCCCCCc
Confidence 5655443 333333333333322 3578899999999988776 23 35666665 2333 333323348889
Q ss_pred EEecCCCEEEEEeCC------------CeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCc
Q 043172 399 AFADDGKQLLSSGGD------------GQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQE 466 (564)
Q Consensus 399 ~~spdg~~l~s~s~d------------g~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~ 466 (564)
.|+|+|..|++.... +.+++.++..+.... .....|..+.|||+|..||... +|.|.|--+..
T Consensus 403 sWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~----~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr 477 (591)
T PRK13616 403 SWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS----RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQ 477 (591)
T ss_pred eECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh----ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEe
Confidence 999998877776532 233333443332221 1123589999999999888766 47777733222
Q ss_pred ccCCcc---eeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCE
Q 043172 467 FLGGKR---KPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGF 543 (564)
Q Consensus 467 ~~~~~~---~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~ 543 (564)
...+.. .+..........+.++.|.+++.++ ++....+..+....+.... ...++. ......+.+++=+++ .
T Consensus 478 ~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~-~~~~~~-~n~~~~v~~vaa~~~--~ 552 (591)
T PRK13616 478 TEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSN-SDALPS-RNLSAPVVAVAASPS--T 552 (591)
T ss_pred CCCCceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEecCCcc-ccccCC-CCccCceEEEecCCc--e
Confidence 111111 1111112334446889999999966 4444334445555554222 111122 223466777877763 4
Q ss_pred EEEEcCCCeEE
Q 043172 544 MAVGNAAGKVF 554 (564)
Q Consensus 544 Lasgs~dG~V~ 554 (564)
|++...+|.+.
T Consensus 553 iyv~~~~g~~~ 563 (591)
T PRK13616 553 VYVTDARAVLQ 563 (591)
T ss_pred EEEEcCCceEE
Confidence 66667777444
No 362
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.86 E-value=0.038 Score=56.62 Aligned_cols=230 Identities=15% Similarity=0.162 Sum_probs=108.4
Q ss_pred CCCEEEEEe-CCCeEEEEECCCC----ceeeeccc---ccc-CCcceEEEEEcCCCCEEEEEeC------CCeEEEEECC
Q 043172 317 DGSQAIIAG-RRKFFYSLDLVKA----KADKIGPL---VGR-EEKSLEFFEVSPDSSVIAFVGN------EGYILLVSSK 381 (564)
Q Consensus 317 dg~~l~s~~-~dg~i~iwdl~~~----~~~~~~~~---~~~-~~~~v~~~~~spdg~~la~~~~------dg~I~lwd~~ 381 (564)
..++|++.+ ..+.|+|.|+.+. ++.++..- ... .-.....+..-|+|++++++-. -|-+.++|-.
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 457888877 6789999998843 33332211 110 0012233444578888877532 2678999988
Q ss_pred CCcEEEEeee----cCcEEEEEEecCCCEEEEEe--------------------CCCeEEEEECCCCceeEEEeecCC-c
Q 043172 382 TKELIGTLKM----NGTVRSLAFADDGKQLLSSG--------------------GDGQVYHWDLRTRTCIHRAVDEGC-I 436 (564)
Q Consensus 382 t~~~~~~~~~----~~~V~~l~~spdg~~l~s~s--------------------~dg~V~lwD~~~~~~~~~~~~~~~-~ 436 (564)
+.+....... ..--.++.|.|..+.+++.. ...++.+||+.+++.++.+..... .
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 8888777663 23457888899888888874 235899999999999988876432 2
Q ss_pred ceEEEEEC--CCCCEEEEEe-CCCcEEEEeCCcccCCcce--eeEEcc-----------------ccccceeEEEEcCCC
Q 043172 437 NGTALCTS--PDGTFFAAGS-DSGIVNVYNRQEFLGGKRK--PIKTIE-----------------NLTTKVDFMKFNNDA 494 (564)
Q Consensus 437 ~i~~l~~s--p~g~~lasgs-~dg~V~iwd~~~~~~~~~~--~~~~~~-----------------~~~~~I~~l~fspdg 494 (564)
....|.|. |+..+-++|+ -.++|..|-.... +.+. .+..+. ....-|+.|..|.|.
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~--g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD 323 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDD--GEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD 323 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ET--TEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCC--CCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCC
Confidence 23456665 4444433333 3444544433221 1111 111111 113558999999999
Q ss_pred cEEEEEecCCCCeEEEEEcCCCceec---c-C----------CCC--CCCCCCcEEEEEeCCCCEEEEEcC
Q 043172 495 QILAICSTMKKNSLKLIHIPSYNVFS---N-W----------PPA--NRNLQYPRCLDFSPGGGFMAVGNA 549 (564)
Q Consensus 495 ~~La~~s~~~d~~I~lwdl~s~~~~~---~-~----------~~~--~~~~~~V~~l~fspdg~~Lasgs~ 549 (564)
++|.+++.. .|.||.||+..-.... . + +.. ..-.+..+-+..|-||+.|++.++
T Consensus 324 rfLYvs~W~-~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 324 RFLYVSNWL-HGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp -EEEEEETT-TTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred CEEEEEccc-CCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 999998875 8999999997522111 0 0 000 011234578899999998887653
No 363
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.84 E-value=0.017 Score=63.83 Aligned_cols=282 Identities=16% Similarity=0.160 Sum_probs=162.3
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCce--eEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCce
Q 043172 263 GPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTK--IQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKA 340 (564)
Q Consensus 263 ~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~--~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~ 340 (564)
..|--.+|--+..+|+++..||.+.-|.++..+... .+..+....|+.--.|+..++.-+.+..|+-..+|.-+ ++.
T Consensus 584 RSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n-~kL 662 (1096)
T KOG1897|consen 584 RSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSN-GKL 662 (1096)
T ss_pred hheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecC-CcE
Confidence 345555666678899999999999888877544332 22233445677777787655444444445545555433 332
Q ss_pred eeeccccccCCcceEEEEEcC--CCCEEEEEeCCCeEEEEECCCCc--EEEEeeecCcEEEEEEecCCCEEEEEeC----
Q 043172 341 DKIGPLVGREEKSLEFFEVSP--DSSVIAFVGNEGYILLVSSKTKE--LIGTLKMNGTVRSLAFADDGKQLLSSGG---- 412 (564)
Q Consensus 341 ~~~~~~~~~~~~~v~~~~~sp--dg~~la~~~~dg~I~lwd~~t~~--~~~~~~~~~~V~~l~~spdg~~l~s~s~---- 412 (564)
. ...+.-.....+ +.|+. -...++++. .+.+.+.-+..-+ .++++.....+..+++.+....+.+.+.
T Consensus 663 v-~spls~kev~~~--c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~ 738 (1096)
T KOG1897|consen 663 V-YSPLSLKEVNHM--CPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIES 738 (1096)
T ss_pred E-EeccchHHhhhh--cccccccCCceEEEec-CCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEeccccc
Confidence 1 111211111111 22222 233455543 4566666554332 3344445667778888875444444332
Q ss_pred -------C---CeEEEEECCCCceeEEEeecC---CcceEEEEECCC-CCEEEEEeC----------CCcEEEEeCCccc
Q 043172 413 -------D---GQVYHWDLRTRTCIHRAVDEG---CINGTALCTSPD-GTFFAAGSD----------SGIVNVYNRQEFL 468 (564)
Q Consensus 413 -------d---g~V~lwD~~~~~~~~~~~~~~---~~~i~~l~~sp~-g~~lasgs~----------dg~V~iwd~~~~~ 468 (564)
. ..++++|-++.+.+....... ...+.++.|..+ +.++++|+. .|.|.||.+...
T Consensus 739 ~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~- 817 (1096)
T KOG1897|consen 739 SAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEEL- 817 (1096)
T ss_pred chhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecC-
Confidence 1 246777777766655433322 223455557766 678888862 578888887763
Q ss_pred CCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEc
Q 043172 469 GGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGN 548 (564)
Q Consensus 469 ~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs 548 (564)
++.+.++... ..+.+.++..- +|++||.- +..|+||+..+.+.++ ....+..++..+...-.|..+++|.
T Consensus 818 -~~L~~v~e~~-v~Gav~aL~~f-ngkllA~I----n~~vrLye~t~~~eLr---~e~~~~~~~~aL~l~v~gdeI~VgD 887 (1096)
T KOG1897|consen 818 -NSLELVAETV-VKGAVYALVEF-NGKLLAGI----NQSVRLYEWTTERELR---IECNISNPIIALDLQVKGDEIAVGD 887 (1096)
T ss_pred -Cceeeeeeee-eccceeehhhh-CCeEEEec----CcEEEEEEccccceeh---hhhcccCCeEEEEEEecCcEEEEee
Confidence 2223333322 23444444322 56666543 4689999998875544 3344557789999999999999999
Q ss_pred CCCeEEEEEcCC
Q 043172 549 AAGKVFLYKLNH 560 (564)
Q Consensus 549 ~dG~V~lw~l~~ 560 (564)
--+.+.+-....
T Consensus 888 lm~Sitll~y~~ 899 (1096)
T KOG1897|consen 888 LMRSITLLQYKG 899 (1096)
T ss_pred ccceEEEEEEec
Confidence 888887765543
No 364
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=0.00061 Score=69.93 Aligned_cols=145 Identities=19% Similarity=0.273 Sum_probs=102.8
Q ss_pred CCCCEEEE-EeCCCeEEEEECCCCcEEEEeeecCcEEEEEEecCCC-------EEEEEeCCCeEEEEECCCCce-eEEEe
Q 043172 361 PDSSVIAF-VGNEGYILLVSSKTKELIGTLKMNGTVRSLAFADDGK-------QLLSSGGDGQVYHWDLRTRTC-IHRAV 431 (564)
Q Consensus 361 pdg~~la~-~~~dg~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~-------~l~s~s~dg~V~lwD~~~~~~-~~~~~ 431 (564)
.+.++|+. +.....++-.|+..|+.+...+....|+-+.+.|+.+ .-++|-.+..|.-||++-... ...+.
T Consensus 343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred cccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 34455443 4455779999999999999998666688888888653 233455678899999985332 11111
Q ss_pred e----cCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCe
Q 043172 432 D----EGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNS 507 (564)
Q Consensus 432 ~----~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~ 507 (564)
. .......|++-..+| +||+||.+|.|++||.-.. ..-..+.+...+|.+|..+.+|.+|++.+ +..
T Consensus 423 q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~-----~AKTAlPgLG~~I~hVdvtadGKwil~Tc---~ty 493 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGR-----RAKTALPGLGDAIKHVDVTADGKWILATC---KTY 493 (644)
T ss_pred eccccccccccceeeecCCc-eEEEeecCCcEEeehhhhh-----hhhhcccccCCceeeEEeeccCcEEEEec---ccE
Confidence 1 122234556555554 8999999999999998432 44445788999999999999999998777 678
Q ss_pred EEEEEcC
Q 043172 508 LKLIHIP 514 (564)
Q Consensus 508 I~lwdl~ 514 (564)
+.|.++.
T Consensus 494 LlLi~t~ 500 (644)
T KOG2395|consen 494 LLLIDTL 500 (644)
T ss_pred EEEEEEe
Confidence 8888764
No 365
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=0.033 Score=53.62 Aligned_cols=277 Identities=12% Similarity=0.095 Sum_probs=153.2
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceee
Q 043172 263 GPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADK 342 (564)
Q Consensus 263 ~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~ 342 (564)
+.+..+.|+ ++++..+..+.-++|+|+.....+.+.......+--++ |.-.|++..++..+.-+.+.|+.+.+...
T Consensus 87 ~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyayg--v~vsGn~aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 87 DLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYG--VYVSGNYAYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred hhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEE--EEecCCEEEEeeccCcEEEEECCCCCCce
Confidence 345556665 45677777778899999987766555443322233333 44468999998867668889988765433
Q ss_pred eccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc---EEEEeeecCcEEEEEEecCCCEEEEEeCCCeEEEE
Q 043172 343 IGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKE---LIGTLKMNGTVRSLAFADDGKQLLSSGGDGQVYHW 419 (564)
Q Consensus 343 ~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~---~~~~~~~~~~V~~l~~spdg~~l~s~s~dg~V~lw 419 (564)
+...........+.+++| |++-+.+..++-+.+.|+.... .+........+.++..+++--+++.. +--+.+-
T Consensus 163 lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy--~egvliv 238 (370)
T COG5276 163 LAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVY--DEGVLIV 238 (370)
T ss_pred eeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEc--ccceEEE
Confidence 222211122223456665 7777778889999999987543 33333344478888777665444443 3447777
Q ss_pred ECCCCceeEEEee---cCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcE
Q 043172 420 DLRTRTCIHRAVD---EGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQI 496 (564)
Q Consensus 420 D~~~~~~~~~~~~---~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~ 496 (564)
|....+....+-. .....++.+.++ +.+......+.-+-+-|+... ..+.....+......-..+.. .+.+
T Consensus 239 d~s~~ssp~~~gsyet~~p~~~s~v~Vs--~~~~Yvadga~gl~~idisnp--~spfl~ss~~t~g~~a~gi~a--y~~y 312 (370)
T COG5276 239 DVSGPSSPTVFGSYETSNPVSISTVPVS--GEYAYVADGAKGLPIIDISNP--PSPFLSSSLDTAGYQAAGIRA--YGNY 312 (370)
T ss_pred ecCCCCCceEeeccccCCcccccceecc--cceeeeeccccCceeEeccCC--CCCchhccccCCCccccceEE--ecCe
Confidence 8876664443332 233333333443 445555555556666777654 222222222211112222322 2444
Q ss_pred EEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q 043172 497 LAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLN 559 (564)
Q Consensus 497 La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~ 559 (564)
+..+-. +...+.+...-+.....+.. ...+.+.+.+-+.+++.+...+|-+.||+..
T Consensus 313 ~yiadk---n~g~vV~~s~~s~m~~~~g~---~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~~ 369 (370)
T COG5276 313 NYIADK---NTGAVVDASPPSMMDKRPGR---PTIGQSCDVSVDTQIIYSTDYNGGLSIIEYL 369 (370)
T ss_pred eEeccC---CceEEEeCCChhhcccccCc---ceEeeecceEEEeeEEEEeecCCCEEEEEec
Confidence 544443 24444554332222211111 1223444555556688888999999999864
No 366
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.82 E-value=0.0092 Score=59.65 Aligned_cols=222 Identities=14% Similarity=0.117 Sum_probs=131.5
Q ss_pred EEeeCCCEEEEEe-CCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-
Q 043172 313 SFLPDGSQAIIAG-RRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK- 390 (564)
Q Consensus 313 ~fspdg~~l~s~~-~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~- 390 (564)
.|.++...|+.+. ..+.|+-|+..++..... ...+ .+.++..-..+..|+++. .-+.+++..++..+..+.
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~-~~p~----~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~ 103 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRVF-PSPG----GFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAE 103 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEEE-ECCC----CcccceeecCCCeEEEEc--cccEEEeccCCceeEEecc
Confidence 4677777666554 678899999987765322 2222 233333333444444443 336667766665533332
Q ss_pred -----ecCcEEEEEEecCCCEEEEEeC-----------CCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEe
Q 043172 391 -----MNGTVRSLAFADDGKQLLSSGG-----------DGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGS 454 (564)
Q Consensus 391 -----~~~~V~~l~~spdg~~l~s~s~-----------dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs 454 (564)
.....+++...|+|.+.++... -|.|+.+|. .+..+..+..+ -...+.|+|||+++.|+..-
T Consensus 104 ~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~-~~~~NGla~SpDg~tly~aD 181 (307)
T COG3386 104 PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDD-LTIPNGLAFSPDGKTLYVAD 181 (307)
T ss_pred ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCc-EEecCceEECCCCCEEEEEe
Confidence 1245678889999986665433 145666665 34444444332 22347899999998766654
Q ss_pred -CCCcEEEEeCCc--ccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCC
Q 043172 455 -DSGIVNVYNRQE--FLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQY 531 (564)
Q Consensus 455 -~dg~V~iwd~~~--~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~ 531 (564)
..+.|.-|++.. +..........+....+..-.++...+|.+.+++.. ..+.|.+|+.. ++.+..+.... ..
T Consensus 182 T~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~-~g~~v~~~~pd-G~l~~~i~lP~---~~ 256 (307)
T COG3386 182 TPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVW-GGGRVVRFNPD-GKLLGEIKLPV---KR 256 (307)
T ss_pred CCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEeccc-CCceEEEECCC-CcEEEEEECCC---CC
Confidence 457888888763 111122223333344566677888888888764443 12489999988 77777554443 56
Q ss_pred cEEEEEe-CCCCEEEEEc
Q 043172 532 PRCLDFS-PGGGFMAVGN 548 (564)
Q Consensus 532 V~~l~fs-pdg~~Lasgs 548 (564)
+++++|- |+.+.|++.+
T Consensus 257 ~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 257 PTNPAFGGPDLNTLYITS 274 (307)
T ss_pred CccceEeCCCcCEEEEEe
Confidence 7888885 4555555443
No 367
>PRK13684 Ycf48-like protein; Provisional
Probab=97.81 E-value=0.054 Score=55.19 Aligned_cols=280 Identities=15% Similarity=0.113 Sum_probs=136.1
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCC-CCceeEE-EEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCc
Q 043172 262 TGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGK-RNTKIQS-IFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAK 339 (564)
Q Consensus 262 ~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~-~~~~~~~-~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~ 339 (564)
..++++|+|.....-+++|. .+.|.. ..+++ +...+.. +.....++.++.|.++ ..++ ++..+.|+.- -..|+
T Consensus 45 ~~~l~~v~F~d~~~g~avG~-~G~il~-T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~-~G~~g~i~~S-~DgG~ 119 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGS-NRTLLE-TNDGGETWEERSLDLPEENFRLISISFKGD-EGWI-VGQPSLLLHT-TDGGK 119 (334)
T ss_pred CCceEEEEEeCCCcEEEEEC-CCEEEE-EcCCCCCceECccCCcccccceeeeEEcCC-cEEE-eCCCceEEEE-CCCCC
Confidence 56899999986666666664 554432 11222 2221110 1112345677877643 3333 4445544332 12222
Q ss_pred -eeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEeCCCeEE
Q 043172 340 -ADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQVY 417 (564)
Q Consensus 340 -~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~V~ 417 (564)
...+.............+.+.+ +.. ..++..|.|..=+-....+..... ..+.+.++.+.|++.+++++ ..|.++
T Consensus 120 tW~~~~~~~~~~~~~~~i~~~~~-~~~-~~~g~~G~i~~S~DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~~g-~~G~i~ 196 (334)
T PRK13684 120 NWTRIPLSEKLPGSPYLITALGP-GTA-EMATNVGAIYRTTDGGKNWEALVEDAAGVVRNLRRSPDGKYVAVS-SRGNFY 196 (334)
T ss_pred CCeEccCCcCCCCCceEEEEECC-Ccc-eeeeccceEEEECCCCCCceeCcCCCcceEEEEEECCCCeEEEEe-CCceEE
Confidence 2111100001111222333333 222 333445555433212222322221 34678899999988666554 456555
Q ss_pred EEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEc-cccccceeEEEEcCCCcE
Q 043172 418 HWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTI-ENLTTKVDFMKFNNDAQI 496 (564)
Q Consensus 418 lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~-~~~~~~I~~l~fspdg~~ 496 (564)
.-.-..++.-..........++.+.+.++++.+++| ..|.+.+=....+ ...+.+..- ......+..+.|.|++.+
T Consensus 197 ~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G--~sW~~~~~~~~~~~~~l~~v~~~~~~~~ 273 (334)
T PRK13684 197 STWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDL--ESWSKPIIPEITNGYGYLDLAYRTPGEI 273 (334)
T ss_pred EEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCC--CccccccCCccccccceeeEEEcCCCCE
Confidence 321112222222233334467889999999877765 4566543223332 122222111 112245788999998887
Q ss_pred EEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEE
Q 043172 497 LAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYK 557 (564)
Q Consensus 497 La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~ 557 (564)
++++. +|.|. .....+......+.........+.+.|..++..+++ +..|.|.-|+
T Consensus 274 ~~~G~---~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~G~il~~~ 329 (334)
T PRK13684 274 WAGGG---NGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL-GQRGVLLRYV 329 (334)
T ss_pred EEEcC---CCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEE-CCCceEEEec
Confidence 76654 45554 444555544433321111235777888877776665 4688887775
No 368
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.80 E-value=0.011 Score=61.97 Aligned_cols=179 Identities=14% Similarity=0.225 Sum_probs=95.7
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCC----CceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCC
Q 043172 263 GPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKR----NTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKA 338 (564)
Q Consensus 263 ~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~----~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~ 338 (564)
+.|-++.|+.+..++ +-..||++++|++.+.. ...+.........+.+..+..+| .++. ..++.|++..-...
T Consensus 81 ~~iv~~~wt~~e~Lv-vV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G-ivvL-t~~~~~~~v~n~~~ 157 (410)
T PF04841_consen 81 GRIVGMGWTDDEELV-VVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG-IVVL-TGNNRFYVVNNIDE 157 (410)
T ss_pred CCEEEEEECCCCeEE-EEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC-EEEE-CCCCeEEEEeCccc
Confidence 789999999865555 55589999999986543 00111111112222233333355 2322 33444444432221
Q ss_pred c-e-eeeccccccCC-----cceEE-EEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEE
Q 043172 339 K-A-DKIGPLVGREE-----KSLEF-FEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSS 410 (564)
Q Consensus 339 ~-~-~~~~~~~~~~~-----~~v~~-~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~ 410 (564)
. . .+...+++... ..... ..++.+....+....++.+.+.+-...+. +...+++..+++||++++|+.-
T Consensus 158 ~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~~~~~i~~iavSpng~~iAl~ 234 (410)
T PF04841_consen 158 PVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---IDSDGPIIKIAVSPNGKFIALF 234 (410)
T ss_pred cchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---ccCCCCeEEEEECCCCCEEEEE
Confidence 1 1 11111111110 00111 23444555555555556666554332211 3345789999999999999999
Q ss_pred eCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCC
Q 043172 411 GGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDG 447 (564)
Q Consensus 411 s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g 447 (564)
..+|.+.+....-.+.+..+..........+.|..+.
T Consensus 235 t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 235 TDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred ECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence 9999999998776666666555433344566665443
No 369
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.76 E-value=0.029 Score=56.99 Aligned_cols=226 Identities=15% Similarity=0.045 Sum_probs=119.3
Q ss_pred EEEeeCCCEEEEEeC---CCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE
Q 043172 312 ASFLPDGSQAIIAGR---RKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGT 388 (564)
Q Consensus 312 l~fspdg~~l~s~~~---dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~ 388 (564)
=+|.++|++|+.++. ...+++.|+.+++..++....+.. .....++|+++.++.......|.-.|+.+.+....
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~---~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~v 117 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDN---TFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVV 117 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B----TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEE
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCC---ccceEEecCCCeEEEEECCCeEEEEECCcCcEEEE
Confidence 357789988888764 567999999999988765544322 22466789889888777778999999999887666
Q ss_pred ee-ecCcEEEEEEe--cCCCEEEEEe----------------------CCCeEEEEECCCCceeEEEeecCCcceEEEEE
Q 043172 389 LK-MNGTVRSLAFA--DDGKQLLSSG----------------------GDGQVYHWDLRTRTCIHRAVDEGCINGTALCT 443 (564)
Q Consensus 389 ~~-~~~~V~~l~~s--pdg~~l~s~s----------------------~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~ 443 (564)
+. ....+....|. .++..++..- ....|...|+.+++....+... ..+..+.|
T Consensus 118 y~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~--~wlgH~~f 195 (386)
T PF14583_consen 118 YEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDT--DWLGHVQF 195 (386)
T ss_dssp EE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEES--S-EEEEEE
T ss_pred EECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecC--ccccCccc
Confidence 66 44445445664 3565544321 1245677788887765444432 25678889
Q ss_pred CCCCCEEEEEeCCC-----cEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCC---eEEEEEcCC
Q 043172 444 SPDGTFFAAGSDSG-----IVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKN---SLKLIHIPS 515 (564)
Q Consensus 444 sp~g~~lasgs~dg-----~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~---~I~lwdl~s 515 (564)
+|....+++=|..| .-+||-++... ...++++.-. ....+.+=-|.|||..|..-+..+.+ .|.-+++.+
T Consensus 196 sP~dp~li~fCHEGpw~~Vd~RiW~i~~dg-~~~~~v~~~~-~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t 273 (386)
T PF14583_consen 196 SPTDPTLIMFCHEGPWDLVDQRIWTINTDG-SNVKKVHRRM-EGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDT 273 (386)
T ss_dssp ETTEEEEEEEEE-S-TTTSS-SEEEEETTS----EESS----TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT
T ss_pred CCCCCCEEEEeccCCcceeceEEEEEEcCC-CcceeeecCC-CCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCC
Confidence 99766555544333 13566665431 2234443332 24566777899999988765543233 466667776
Q ss_pred CceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcC
Q 043172 516 YNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNA 549 (564)
Q Consensus 516 ~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~ 549 (564)
+......+. .....+--++||++++-=+.
T Consensus 274 ~~~~~~~~~-----p~~~H~~ss~Dg~L~vGDG~ 302 (386)
T PF14583_consen 274 GERRRLMEM-----PWCSHFMSSPDGKLFVGDGG 302 (386)
T ss_dssp --EEEEEEE------SEEEEEE-TTSSEEEEEE-
T ss_pred CCceEEEeC-----CceeeeEEcCCCCEEEecCC
Confidence 654321111 12345666789887764333
No 370
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.74 E-value=0.04 Score=56.43 Aligned_cols=228 Identities=15% Similarity=0.119 Sum_probs=111.5
Q ss_pred CCCEEEEEe-CCCcEEEEEecCC-CCceeEE-EEe---CC----cCeEEEEEeeCCCEEEEEe------CCCeEEEEECC
Q 043172 273 NAQLLLVAG-LDRRLRFFQIDGK-RNTKIQS-IFL---ED----CPVRKASFLPDGSQAIIAG------RRKFFYSLDLV 336 (564)
Q Consensus 273 dg~~l~s~s-~dg~I~lwd~~~~-~~~~~~~-~~~---~~----~~I~~l~fspdg~~l~s~~------~dg~i~iwdl~ 336 (564)
..++|+..+ ..+.|.|+|+... ..+.+.. +.. +. ...+.+.-.|+|+.++++- ..|-+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 456787777 5788999998632 2333332 221 10 1223334457898888762 23568888888
Q ss_pred CCceeeeccccccCCcceEEEEEcCCCCEEEEEeC--------------------CCeEEEEECCCCcEEEEeeec---C
Q 043172 337 KAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGN--------------------EGYILLVSSKTKELIGTLKMN---G 393 (564)
Q Consensus 337 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~--------------------dg~I~lwd~~t~~~~~~~~~~---~ 393 (564)
+..+.............-..+.|.|..+.+++... ...+++||+.+.+.++++... .
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 76664433332222223456888898888888643 358999999999999999833 3
Q ss_pred cEEEEEEecC--CCE-EEEEeCCCeEEEEEC-CCCce----eEEEeec---C-------------CcceEEEEECCCCCE
Q 043172 394 TVRSLAFADD--GKQ-LLSSGGDGQVYHWDL-RTRTC----IHRAVDE---G-------------CINGTALCTSPDGTF 449 (564)
Q Consensus 394 ~V~~l~~spd--g~~-l~s~s~dg~V~lwD~-~~~~~----~~~~~~~---~-------------~~~i~~l~~sp~g~~ 449 (564)
.+..+.|..+ ..+ ++.+...++|..|-- ..+.- +..+... + ..-++.|.+|.|.++
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf 325 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF 325 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence 4567777654 333 444444566766654 33321 1122110 0 123688999999998
Q ss_pred EEEEe-CCCcEEEEeCCcccCCcceeeEEcc----------------ccccceeEEEEcCCCcEEEEEec
Q 043172 450 FAAGS-DSGIVNVYNRQEFLGGKRKPIKTIE----------------NLTTKVDFMKFNNDAQILAICST 502 (564)
Q Consensus 450 lasgs-~dg~V~iwd~~~~~~~~~~~~~~~~----------------~~~~~I~~l~fspdg~~La~~s~ 502 (564)
|.+.+ ..|.|+.||+... .+++.+..+. ...+...-|..|-||+.|++.+.
T Consensus 326 LYvs~W~~GdvrqYDISDP--~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 326 LYVSNWLHGDVRQYDISDP--FNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp EEEEETTTTEEEEEE-SST--TS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred EEEEcccCCcEEEEecCCC--CCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 87765 5899999999986 4555555432 11233466888999999887764
No 371
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.74 E-value=0.0022 Score=65.19 Aligned_cols=177 Identities=15% Similarity=0.189 Sum_probs=105.5
Q ss_pred CeEEEEECCCCcEEEEee--ecCcEEEEEEec---C----CCEEEEEeC---------C-CeEEEEECCCC-----ceeE
Q 043172 373 GYILLVSSKTKELIGTLK--MNGTVRSLAFAD---D----GKQLLSSGG---------D-GQVYHWDLRTR-----TCIH 428 (564)
Q Consensus 373 g~I~lwd~~t~~~~~~~~--~~~~V~~l~~sp---d----g~~l~s~s~---------d-g~V~lwD~~~~-----~~~~ 428 (564)
+.|+++|..+.+.+..+. .+..+.+++... + ..+|++|+. . |.|.++++... +...
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 468999999998887776 344566555433 2 467777753 2 89999999984 2222
Q ss_pred EEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeE
Q 043172 429 RAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSL 508 (564)
Q Consensus 429 ~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I 508 (564)
........++++++-- ++ +|+++. .+.|.+|++... ....+...+. ....++++... +.++++|.. ...+
T Consensus 82 i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~--~~l~~~~~~~-~~~~i~sl~~~--~~~I~vgD~--~~sv 151 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNS--KTLLKKAFYD-SPFYITSLSVF--KNYILVGDA--MKSV 151 (321)
T ss_dssp EEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETT--SSEEEEEEE--BSSSEEEEEEE--TTEEEEEES--SSSE
T ss_pred EEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCc--ccchhhheec-ceEEEEEEecc--ccEEEEEEc--ccCE
Confidence 2222223456777654 44 455554 368999999875 1112222222 22345555544 668888887 5677
Q ss_pred EEEEcCC-CceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCC
Q 043172 509 KLIHIPS-YNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNH 560 (564)
Q Consensus 509 ~lwdl~s-~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~ 560 (564)
.++.... ...+..+... .....++++.|-+++..++++..+|.|.++....
T Consensus 152 ~~~~~~~~~~~l~~va~d-~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 152 SLLRYDEENNKLILVARD-YQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEEEEETTTE-EEEEEEE-SS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred EEEEEEccCCEEEEEEec-CCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 7775543 2212211111 1124588999987777999999999999998863
No 372
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.72 E-value=0.027 Score=55.60 Aligned_cols=220 Identities=11% Similarity=0.170 Sum_probs=123.4
Q ss_pred eCCCEEEEEeCCCeEEEEEC-CCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE-------
Q 043172 316 PDGSQAIIAGRRKFFYSLDL-VKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIG------- 387 (564)
Q Consensus 316 pdg~~l~s~~~dg~i~iwdl-~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~------- 387 (564)
..++.|+.|..+| ++++++ .......+... .+|..+.+.|.-+.|++-+ |+.+.++++.......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~-----~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~ 77 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKL-----SSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAF 77 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEeec-----ceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccc
Confidence 3578999998888 899998 22332222111 2488999999877766654 4999999987654433
Q ss_pred --------EeeecCcEEEEE--EecCC-CEEEEEeCCCeEEEEECCCC-----ceeEEEeecCCcceEEEEECCCCCEEE
Q 043172 388 --------TLKMNGTVRSLA--FADDG-KQLLSSGGDGQVYHWDLRTR-----TCIHRAVDEGCINGTALCTSPDGTFFA 451 (564)
Q Consensus 388 --------~~~~~~~V~~l~--~spdg-~~l~s~s~dg~V~lwD~~~~-----~~~~~~~~~~~~~i~~l~~sp~g~~la 451 (564)
.+.....+..++ -...+ ..|+++ ....|.+|..... +....+... ..+..++|. ++.|+
T Consensus 78 ~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~lp--~~~~~i~~~--~~~i~ 152 (275)
T PF00780_consen 78 PKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEISLP--DPPSSIAFL--GNKIC 152 (275)
T ss_pred cccccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEEcC--CCcEEEEEe--CCEEE
Confidence 122233455555 11233 444444 4458888777653 344454444 356788887 56788
Q ss_pred EEeCCCcEEEEeCCcccCCcceeeEEccc----------cccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceecc
Q 043172 452 AGSDSGIVNVYNRQEFLGGKRKPIKTIEN----------LTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSN 521 (564)
Q Consensus 452 sgs~dg~V~iwd~~~~~~~~~~~~~~~~~----------~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~ 521 (564)
+|..+ ...+.|+.++ ...++..... ...++..+.. +++.+|++. +..-.+.+. .|...+.
T Consensus 153 v~~~~-~f~~idl~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~----~~~g~fv~~-~G~~~r~ 222 (275)
T PF00780_consen 153 VGTSK-GFYLIDLNTG---SPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY----DNIGVFVNK-NGEPSRK 222 (275)
T ss_pred EEeCC-ceEEEecCCC---CceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe----cceEEEEcC-CCCcCcc
Confidence 88765 4778888864 2233322211 1123333333 345666643 333444444 3332220
Q ss_pred CCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCCCC
Q 043172 522 WPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNHYH 562 (564)
Q Consensus 522 ~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~~~ 562 (564)
....-. ..+.++++.. .||++.+.+ .|-||++.+++
T Consensus 223 -~~i~W~-~~p~~~~~~~--pyli~~~~~-~iEV~~~~~~~ 258 (275)
T PF00780_consen 223 -STIQWS-SAPQSVAYSS--PYLIAFSSN-SIEVRSLETGE 258 (275)
T ss_pred -cEEEcC-CchhEEEEEC--CEEEEECCC-EEEEEECcCCc
Confidence 011111 3455666643 688777665 49999998764
No 373
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.72 E-value=0.0058 Score=64.43 Aligned_cols=205 Identities=17% Similarity=0.163 Sum_probs=106.7
Q ss_pred ceEEEEEcCCCCEEEEEe-CC----CeEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEEeC-----------CCeE
Q 043172 353 SLEFFEVSPDSSVIAFVG-NE----GYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSGG-----------DGQV 416 (564)
Q Consensus 353 ~v~~~~~spdg~~la~~~-~d----g~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s~-----------dg~V 416 (564)
.+..+.+||+|+++|.+- .. ..|+++|+.+++.+...-.......+.|.++++.|+.... ...|
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 355788999999998763 23 4699999999987754322222234999999887776643 2348
Q ss_pred EEEECCCCcee--EEEeecCCcc-eEEEEECCCCCEEEEEeCC----CcEEEEeCCcccCCcceeeEEccccccce-eEE
Q 043172 417 YHWDLRTRTCI--HRAVDEGCIN-GTALCTSPDGTFFAAGSDS----GIVNVYNRQEFLGGKRKPIKTIENLTTKV-DFM 488 (564)
Q Consensus 417 ~lwD~~~~~~~--~~~~~~~~~~-i~~l~~sp~g~~lasgs~d----g~V~iwd~~~~~~~~~~~~~~~~~~~~~I-~~l 488 (564)
+.|.+.+...- ..+....... ...+..++++++|++.+.. ..|.+.++....... .....+......+ ..+
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~-~~~~~l~~~~~~~~~~v 283 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPD-AKPKLLSPREDGVEYYV 283 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS--SEEEEEESSSS-EEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCc-CCcEEEeCCCCceEEEE
Confidence 99998876432 3333333222 5688899999988865433 346777776520001 1222222222233 333
Q ss_pred EEcCCCcEEEEEe-cCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEE-EEcCCC--eEEEEEcC
Q 043172 489 KFNNDAQILAICS-TMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMA-VGNAAG--KVFLYKLN 559 (564)
Q Consensus 489 ~fspdg~~La~~s-~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~La-sgs~dG--~V~lw~l~ 559 (564)
... .+.+++... ....+.|...++..............+...+.-..++..+.+|+ ....++ .|++|++.
T Consensus 284 ~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 284 DHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT
T ss_pred Ecc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECC
Confidence 333 443443332 22345676677766542110001111112222223333444444 444444 47777765
No 374
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.69 E-value=0.012 Score=61.70 Aligned_cols=151 Identities=15% Similarity=0.214 Sum_probs=91.4
Q ss_pred CCeeEEEEcCCCCEEEEEe--CCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeC----CCEEEEEeCCCeEEEEECC
Q 043172 263 GPINSVQFHRNAQLLLVAG--LDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPD----GSQAIIAGRRKFFYSLDLV 336 (564)
Q Consensus 263 ~~V~~l~fspdg~~l~s~s--~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspd----g~~l~s~~~dg~i~iwdl~ 336 (564)
.||..++|.-..+.++|.- .+|.+++= .. .+-+.-..|..++|.|- ...|++....+.|.||-+.
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfG-----ds----~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFG-----DS----KVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCccccC-----Cc----cEeeccceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 4899999985445555542 12222211 11 12233356899999984 3366677788999999876
Q ss_pred CC-----cee--eeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECC--CCcEEEEeeecCcEEEEEEecCCCEE
Q 043172 337 KA-----KAD--KIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSK--TKELIGTLKMNGTVRSLAFADDGKQL 407 (564)
Q Consensus 337 ~~-----~~~--~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~--t~~~~~~~~~~~~V~~l~~spdg~~l 407 (564)
-. +.. +...+.....---..+.|+|....|++-.....-.++++. +......++..+.|.|.+|.+||+.|
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RL 170 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRL 170 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEE
Confidence 32 111 1111111110112457899998888776665544555654 33444455678999999999999988
Q ss_pred EEEeC-CCeEEEEECC
Q 043172 408 LSSGG-DGQVYHWDLR 422 (564)
Q Consensus 408 ~s~s~-dg~V~lwD~~ 422 (564)
+++-. .=.-++||-.
T Consensus 171 VVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 171 VVAVGSSLHSYIWDSA 186 (671)
T ss_pred EEEeCCeEEEEEecCc
Confidence 77643 3456888854
No 375
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.63 E-value=0.0041 Score=67.95 Aligned_cols=188 Identities=15% Similarity=0.131 Sum_probs=107.1
Q ss_pred cCeEEEEEeeCCCEEEEEe------CC--CeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCC------
Q 043172 307 CPVRKASFLPDGSQAIIAG------RR--KFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNE------ 372 (564)
Q Consensus 307 ~~I~~l~fspdg~~l~s~~------~d--g~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d------ 372 (564)
..+...+++|+|+.+++.. .+ ..|++++.. +....+ ..+. ......|+|+|..|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~l--t~g~---~~t~PsWspDG~~lw~v~dg~~~~~v 423 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQV--LEGH---SLTRPSWSLDADAVWVVVDGNTVVRV 423 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccceee--ecCC---CCCCceECCCCCceEEEecCcceEEE
Confidence 4678899999999988765 23 356666653 222222 2222 36778999998888777532
Q ss_pred ------CeEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEEeCCCeEEE---EECCCCce-e---EEEeecCCcceE
Q 043172 373 ------GYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSGGDGQVYH---WDLRTRTC-I---HRAVDEGCINGT 439 (564)
Q Consensus 373 ------g~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s~dg~V~l---wD~~~~~~-~---~~~~~~~~~~i~ 439 (564)
+.+.+..+..+.... ...+.|..+.|+|||..|+... +|.|++ -....+.. + ..+...-.....
T Consensus 424 ~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~ 500 (591)
T PRK13616 424 IRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAV 500 (591)
T ss_pred eccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccc
Confidence 233333444333322 2356799999999999888776 478877 44333431 1 011111121247
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEE
Q 043172 440 ALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKL 510 (564)
Q Consensus 440 ~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~l 510 (564)
.+.|..++.++ ++..++...+|.+.-. +.......-.+...++..|+-++. . |+++.. ++.+.+
T Consensus 501 ~l~W~~~~~L~-V~~~~~~~~v~~v~vD--G~~~~~~~~~n~~~~v~~vaa~~~-~-iyv~~~--~g~~~l 564 (591)
T PRK13616 501 SLDWRTGDSLV-VGRSDPEHPVWYVNLD--GSNSDALPSRNLSAPVVAVAASPS-T-VYVTDA--RAVLQL 564 (591)
T ss_pred cceEecCCEEE-EEecCCCCceEEEecC--CccccccCCCCccCceEEEecCCc-e-EEEEcC--CceEEe
Confidence 78999988854 6655555555554432 111111122234677888887763 3 444443 454443
No 376
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.57 E-value=0.047 Score=53.27 Aligned_cols=166 Identities=20% Similarity=0.162 Sum_probs=100.4
Q ss_pred CCCceeeeccccccCCcceEEEEEcCCCCEEEEEe---CCCeEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEEeC
Q 043172 336 VKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVG---NEGYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSGG 412 (564)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~---~dg~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s~ 412 (564)
.......+....+.....+...++++++..+|+.. ....++++.. +.....+.....++...|++++...++...
T Consensus 8 ~~~~~~pv~g~~~~~~~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~ 85 (253)
T PF10647_consen 8 SGGGVTPVPGALGEGGYDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVLTGGSLTRPSWDPDGWVWTVDDG 85 (253)
T ss_pred cCCceeECCCCcCcCCccccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeeccCCccccccccCCCCEEEEEcC
Confidence 33333333333333323588999999999887766 3345555543 333333223347888899999877766666
Q ss_pred CCeEEEEE-CCCCceeEE-EeecCCc-ceEEEEECCCCCEEEEEe---CCCcEEEEeCCcccCC----cceeeEEccccc
Q 043172 413 DGQVYHWD-LRTRTCIHR-AVDEGCI-NGTALCTSPDGTFFAAGS---DSGIVNVYNRQEFLGG----KRKPIKTIENLT 482 (564)
Q Consensus 413 dg~V~lwD-~~~~~~~~~-~~~~~~~-~i~~l~~sp~g~~lasgs---~dg~V~iwd~~~~~~~----~~~~~~~~~~~~ 482 (564)
+...+++. ...+..... ....... .|+.+.+||+|..+|.-. ..+.|.|--+...... ...++.......
T Consensus 86 ~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~ 165 (253)
T PF10647_consen 86 SGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLL 165 (253)
T ss_pred CCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEeccccc
Confidence 66666663 333332221 1111111 789999999999777665 3577777765433212 112233333446
Q ss_pred cceeEEEEcCCCcEEEEEecC
Q 043172 483 TKVDFMKFNNDAQILAICSTM 503 (564)
Q Consensus 483 ~~I~~l~fspdg~~La~~s~~ 503 (564)
..++.+.|.+++.+++.+...
T Consensus 166 ~~v~~v~W~~~~~L~V~~~~~ 186 (253)
T PF10647_consen 166 SDVTDVAWSDDSTLVVLGRSA 186 (253)
T ss_pred CcceeeeecCCCEEEEEeCCC
Confidence 789999999999988877764
No 377
>PHA02713 hypothetical protein; Provisional
Probab=97.52 E-value=0.012 Score=64.21 Aligned_cols=218 Identities=9% Similarity=0.056 Sum_probs=113.8
Q ss_pred eEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCC------CeEEEEECCCCcEEEEeeecCcE-EEEEEe
Q 043172 329 FFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNE------GYILLVSSKTKELIGTLKMNGTV-RSLAFA 401 (564)
Q Consensus 329 ~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d------g~I~lwd~~t~~~~~~~~~~~~V-~~l~~s 401 (564)
.+..||..++....+..++.... . .+++ .-++..+++||.+ ..+..||..+..+...-....+. ......
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~-~-~~~a-~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~ 349 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHII-N-YASA-IVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAV 349 (557)
T ss_pred CEEEEeCCCCeEEECCCCCcccc-c-eEEE-EECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEE
Confidence 57789998887766555443221 1 1222 2356777777753 35888999888775433222111 111222
Q ss_pred cCCCEEEEEeCCC-----eEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCC-------------------
Q 043172 402 DDGKQLLSSGGDG-----QVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSG------------------- 457 (564)
Q Consensus 402 pdg~~l~s~s~dg-----~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg------------------- 457 (564)
-+|+..+.||.++ .|..||..+.+-...-.........+++ .-+|...++|+.++
T Consensus 350 ~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~-~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~ 428 (557)
T PHA02713 350 IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMC-VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT 428 (557)
T ss_pred ECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEE-EECCEEEEEeCCCcccccccccccccccccccc
Confidence 3677777787653 4888998876432211111111111121 22677777777542
Q ss_pred ----cEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCC----CeEEEEEcCC-C--ceeccCCCCC
Q 043172 458 ----IVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKK----NSLKLIHIPS-Y--NVFSNWPPAN 526 (564)
Q Consensus 458 ----~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d----~~I~lwdl~s-~--~~~~~~~~~~ 526 (564)
.|..||..+. .+..+..+....... -+..-+|++.++|+.... ..+..||..+ . +....++.
T Consensus 429 ~~~~~ve~YDP~td---~W~~v~~m~~~r~~~--~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~-- 501 (557)
T PHA02713 429 HSSNKVIRYDTVNN---IWETLPNFWTGTIRP--GVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTES-- 501 (557)
T ss_pred cccceEEEECCCCC---eEeecCCCCcccccC--cEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCc--
Confidence 4777887663 223333222111111 122335677777664211 2467788876 3 22333322
Q ss_pred CCCCCcEEEEEeCCCCEEEEEcCCC--eEEEEEcCC
Q 043172 527 RNLQYPRCLDFSPGGGFMAVGNAAG--KVFLYKLNH 560 (564)
Q Consensus 527 ~~~~~V~~l~fspdg~~Lasgs~dG--~V~lw~l~~ 560 (564)
+......+.+ +|...++|+.+| .+-.||..+
T Consensus 502 -~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~ 534 (557)
T PHA02713 502 -RLSALHTILH--DNTIMMLHCYESYMLQDTFNVYT 534 (557)
T ss_pred -ccccceeEEE--CCEEEEEeeecceeehhhcCccc
Confidence 2222333333 778888999888 566666654
No 378
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.52 E-value=0.019 Score=62.66 Aligned_cols=235 Identities=15% Similarity=0.195 Sum_probs=129.7
Q ss_pred cCCCCEEEEEeCCC------cEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCC------CeEEEEECCCC
Q 043172 271 HRNAQLLLVAGLDR------RLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRR------KFFYSLDLVKA 338 (564)
Q Consensus 271 spdg~~l~s~s~dg------~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~d------g~i~iwdl~~~ 338 (564)
+..+.+++.||..+ .+..||........+..+.... .-.+++.. ++...++||.+ ..+..||..+.
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r-~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPR-CRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCccc-ccccEEEE-CCEEEEEccccCCCcccceEEEecCCCC
Confidence 33466777887763 5667777654333333333222 23344444 45666777777 36888999998
Q ss_pred ceeeeccccccCCcceEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCcEEEEeeecCcEEEEEEec-CCCEEEEEeC
Q 043172 339 KADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEG-----YILLVSSKTKELIGTLKMNGTVRSLAFAD-DGKQLLSSGG 412 (564)
Q Consensus 339 ~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg-----~I~lwd~~t~~~~~~~~~~~~V~~l~~sp-dg~~l~s~s~ 412 (564)
+...+..+..... ... ...-+|.+.|+||.+| .|..||..+.++-....+.....+.+... +|.+.++||.
T Consensus 360 ~W~~~a~M~~~R~-~~~--v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~ 436 (571)
T KOG4441|consen 360 QWTPVAPMNTKRS-DFG--VAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGG 436 (571)
T ss_pred ceeccCCccCccc-cce--eEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCc
Confidence 8766544443322 111 1122677888898885 48889988888765554333333333322 6777777775
Q ss_pred CC------eEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCc-----EEEEeCCcccCCcceeeEEcccc
Q 043172 413 DG------QVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGI-----VNVYNRQEFLGGKRKPIKTIENL 481 (564)
Q Consensus 413 dg------~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~-----V~iwd~~~~~~~~~~~~~~~~~~ 481 (564)
++ +|..||..++.....-.....-....++. -++.++++|+.+|. |..||..+. .+..+..+...
T Consensus 437 ~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~---~W~~v~~m~~~ 512 (571)
T KOG4441|consen 437 DGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKIYVVGGFDGTSALSSVERYDPETN---QWTMVAPMTSP 512 (571)
T ss_pred CCCccccceEEEEcCCCCceeecCCcccccccceEEE-ECCEEEEECCccCCCccceEEEEcCCCC---ceeEcccCccc
Confidence 43 57888888776543221111111112222 36778888887763 777888763 33444333322
Q ss_pred ccceeEEEEcCCCcEEEEEecCCC---CeEEEEEcCCC
Q 043172 482 TTKVDFMKFNNDAQILAICSTMKK---NSLKLIHIPSY 516 (564)
Q Consensus 482 ~~~I~~l~fspdg~~La~~s~~~d---~~I~lwdl~s~ 516 (564)
...+..+.+ ++.+.++|+.... ++|..||..+.
T Consensus 513 rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 513 RSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred cccccEEEE--CCEEEEEecccCccccceeEEcCCCCC
Confidence 222222222 4566666665211 24555555443
No 379
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.51 E-value=0.056 Score=52.27 Aligned_cols=221 Identities=11% Similarity=0.169 Sum_probs=133.8
Q ss_pred EEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeee--cCcEEEEEEecCCCEE
Q 043172 330 FYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLKM--NGTVRSLAFADDGKQL 407 (564)
Q Consensus 330 i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~~--~~~V~~l~~spdg~~l 407 (564)
..+|...-.....-.++.|... .+.++.|+|+.+.|++..+...-.|+=...|+.+.++.. -...-+|.|..++++.
T Consensus 65 ~~~~l~~y~~~i~akpi~g~~~-nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fv 143 (316)
T COG3204 65 IARYLLEYRARIDAKPILGETA-NVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFV 143 (316)
T ss_pred hhhccCCceEEEeccccccccc-cccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEE
Confidence 4455444333222233445454 499999999999999988888777777788999998873 3456678888888888
Q ss_pred EEEeCCCeEEEEECCCCceeEEEe-----e----cCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEc
Q 043172 408 LSSGGDGQVYHWDLRTRTCIHRAV-----D----EGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTI 478 (564)
Q Consensus 408 ~s~s~dg~V~lwD~~~~~~~~~~~-----~----~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~ 478 (564)
++--.++.++++.+.....+.... . ....+.-.++|+|....|.++-+-.-+.||.+...... -.++..
T Consensus 144 i~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~--l~~~~~ 221 (316)
T COG3204 144 IVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSS--LSVHAS 221 (316)
T ss_pred EEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcc--cccccc
Confidence 777778999988876553322111 1 22445678999999988888887777778777643110 111111
Q ss_pred cc-------cccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCC------CCCCCCcEEEEEeCCCCEEE
Q 043172 479 EN-------LTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPA------NRNLQYPRCLDFSPGGGFMA 545 (564)
Q Consensus 479 ~~-------~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~------~~~~~~V~~l~fspdg~~La 545 (564)
.. .-..|+++.|++....|++-|.. .+.+.-.+... .++..+... ....-..-.++..++|...+
T Consensus 222 ~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~E-Sr~l~Evd~~G-~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYI 299 (316)
T COG3204 222 LDPTADRDLFVLDVSGLEFNAITNSLLVLSDE-SRRLLEVDLSG-EVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYI 299 (316)
T ss_pred cCcccccceEeeccccceecCCCCcEEEEecC-CceEEEEecCC-CeeeeEEeccCCCCCcccCCCcceeEECCCCCEEE
Confidence 11 13467889999866666655542 45555555542 222211111 11112245677777766443
Q ss_pred EEcCCCeEEEE
Q 043172 546 VGNAAGKVFLY 556 (564)
Q Consensus 546 sgs~dG~V~lw 556 (564)
.|+-+-.+.|
T Consensus 300 -vSEPnlfy~F 309 (316)
T COG3204 300 -VSEPNLFYRF 309 (316)
T ss_pred -EecCCcceec
Confidence 3444444433
No 380
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.50 E-value=0.089 Score=53.59 Aligned_cols=239 Identities=18% Similarity=0.227 Sum_probs=121.7
Q ss_pred eEEEEEeeCCCEEEEEeCCCeEEEEECCCCce-eee---ccccccCCcceEEEEEcCC---CCEEEEEeCC---------
Q 043172 309 VRKASFLPDGSQAIIAGRRKFFYSLDLVKAKA-DKI---GPLVGREEKSLEFFEVSPD---SSVIAFVGNE--------- 372 (564)
Q Consensus 309 I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~-~~~---~~~~~~~~~~v~~~~~spd---g~~la~~~~d--------- 372 (564)
.+.|+|.|+|+.++ +.+.|.|++++ ..+.. ..+ ..+..........++++|+ ..+|++....
T Consensus 4 P~~~a~~pdG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 4 PRSMAFLPDGRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp EEEEEEETTSCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred ceEEEEeCCCcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 47899999986655 56699999999 44433 222 1233334457899999994 3344443331
Q ss_pred CeEEEEECCCC-------cEE-EEeee----cCcEEEEEEecCCCEEEEEeCC-------------CeEEEEECCCCce-
Q 043172 373 GYILLVSSKTK-------ELI-GTLKM----NGTVRSLAFADDGKQLLSSGGD-------------GQVYHWDLRTRTC- 426 (564)
Q Consensus 373 g~I~lwd~~t~-------~~~-~~~~~----~~~V~~l~~spdg~~l~s~s~d-------------g~V~lwD~~~~~~- 426 (564)
..|.-|.+..+ +.+ ..+.. ......|.|.|+|.+.++.+.. |.|.-.+.. ++.
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d-G~~p 160 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD-GSIP 160 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT-SSB-
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEeccc-CcCC
Confidence 23444444333 111 11111 2345679999999766666543 334334432 110
Q ss_pred ------------eEEEeecCCcceEEEEECCC-CCEEEEE-eCCCcEEEEeCCccc------------------------
Q 043172 427 ------------IHRAVDEGCINGTALCTSPD-GTFFAAG-SDSGIVNVYNRQEFL------------------------ 468 (564)
Q Consensus 427 ------------~~~~~~~~~~~i~~l~~sp~-g~~lasg-s~dg~V~iwd~~~~~------------------------ 468 (564)
...+. .+--....++|+|. |.++++= +.++.=.|.-+..+.
T Consensus 161 ~dnP~~~~~~~~~~i~A-~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~ 239 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIYA-YGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSC 239 (331)
T ss_dssp TTSTTTTSTTSTTTEEE-E--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-
T ss_pred CCCccccCCCceEEEEE-eCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCC
Confidence 01111 11224568999998 6654432 223222222222220
Q ss_pred CCcceeeEEccccccceeEEEEcCC-------CcEEEEEecCCCCeEEEEEcCCCceeccCCC-CCCCCCCcEEEEEeCC
Q 043172 469 GGKRKPIKTIENLTTKVDFMKFNND-------AQILAICSTMKKNSLKLIHIPSYNVFSNWPP-ANRNLQYPRCLDFSPG 540 (564)
Q Consensus 469 ~~~~~~~~~~~~~~~~I~~l~fspd-------g~~La~~s~~~d~~I~lwdl~s~~~~~~~~~-~~~~~~~V~~l~fspd 540 (564)
.....|+..+..| ..++.+.|... |.++++.-. .+.|....+.....+..... ......++..+++.||
T Consensus 240 ~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pD 316 (331)
T PF07995_consen 240 PGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYG--GGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPD 316 (331)
T ss_dssp TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETT--TTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETT
T ss_pred CCcCccceeecCc-cccCceEEECCccCccccCcEEEecCC--CCEEEEEeeecCCCccceEEccccCCCCceEEEEcCC
Confidence 0011344445444 56677777643 445554443 67888888864432221111 1223347999999999
Q ss_pred CCEEEEEcCCCeEE
Q 043172 541 GGFMAVGNAAGKVF 554 (564)
Q Consensus 541 g~~Lasgs~dG~V~ 554 (564)
|.++++-..+|.|+
T Consensus 317 G~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 317 GALYVSDDSDGKIY 330 (331)
T ss_dssp SEEEEEE-TTTTEE
T ss_pred CeEEEEECCCCeEe
Confidence 99888888888774
No 381
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.50 E-value=0.0029 Score=70.16 Aligned_cols=137 Identities=12% Similarity=0.106 Sum_probs=94.0
Q ss_pred CCCeEEEEECCCCceeEEEeecCCcceEEEEECC-----CCCEEEEEeCCCcEEEEeCCcccCCcceeeEE-c--ccccc
Q 043172 412 GDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSP-----DGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKT-I--ENLTT 483 (564)
Q Consensus 412 ~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp-----~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~-~--~~~~~ 483 (564)
....|+-.|+..|+.+..|..+....+..++-.. ...-.++|-.+..+..||.+.. + .+.+.. . -....
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~--~-~k~v~~~~k~Y~~~~ 578 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLS--G-NKLVDSQSKQYSSKN 578 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCC--C-CceeeccccccccCC
Confidence 4578999999999999999987765555554221 1223456777888999999864 1 122211 1 12345
Q ss_pred ceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEc
Q 043172 484 KVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKL 558 (564)
Q Consensus 484 ~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l 558 (564)
..+|++-+.+| +||+||. +|.||||+--..+.-..+|.. ..+|.+|+.+.||++|++.+ +..+.|++.
T Consensus 579 ~Fs~~aTt~~G-~iavgs~--~G~IRLyd~~g~~AKT~lp~l---G~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 579 NFSCFATTEDG-YIAVGSN--KGDIRLYDRLGKRAKTALPGL---GDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred CceEEEecCCc-eEEEEeC--CCcEEeecccchhhhhcCCCC---CCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 67788877777 6888898 999999995432222233333 37899999999999987665 556777775
No 382
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.49 E-value=0.13 Score=51.15 Aligned_cols=230 Identities=17% Similarity=0.158 Sum_probs=112.7
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEEecCCC-CceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCc-ee
Q 043172 264 PINSVQFHRNAQLLLVAGLDRRLRFFQIDGKR-NTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAK-AD 341 (564)
Q Consensus 264 ~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~-~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~-~~ 341 (564)
..++|.|..+ ..+++ +..+ +.+...+++. ...+..-..-.+....+....++ .+..++..|.|+.= ...|+ ..
T Consensus 63 ~l~~I~f~~~-~g~iv-G~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~-~~~l~~~~G~iy~T-~DgG~tW~ 137 (302)
T PF14870_consen 63 HLNSISFDGN-EGWIV-GEPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDG-SAELAGDRGAIYRT-TDGGKTWQ 137 (302)
T ss_dssp EEEEEEEETT-EEEEE-EETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETT-EEEEEETT--EEEE-SSTTSSEE
T ss_pred eEEEEEecCC-ceEEE-cCCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCC-cEEEEcCCCcEEEe-CCCCCCee
Confidence 4678888653 34444 4444 4444444332 22221100111233344444444 44444555554432 22232 22
Q ss_pred eeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEeCCCeEEEEE
Q 043172 342 KIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQVYHWD 420 (564)
Q Consensus 342 ~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~V~lwD 420 (564)
.+ .......+..+..+++|++++++.......-|+.-...+...-+ ....|..+.|.|++.+.+++ ..|.|++=+
T Consensus 138 ~~---~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~ 213 (302)
T PF14870_consen 138 AV---VSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSD 213 (302)
T ss_dssp EE---E-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE
T ss_pred Ec---ccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEcc
Confidence 21 11222468888899999999888765566677755444443333 56789999999998766644 888898877
Q ss_pred CCCCceeEEEee------cCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCC
Q 043172 421 LRTRTCIHRAVD------EGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDA 494 (564)
Q Consensus 421 ~~~~~~~~~~~~------~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg 494 (564)
.. .....+.. .....+..++|.+++...|+|+.. .+ ++....+ ...+.........+.++.|.|.+..
T Consensus 214 ~~--~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G-~l-~~S~DgG--ktW~~~~~~~~~~~n~~~i~f~~~~ 287 (302)
T PF14870_consen 214 DP--DDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG-TL-LVSTDGG--KTWQKDRVGENVPSNLYRIVFVNPD 287 (302)
T ss_dssp -T--TEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT--E-EEESSTT--SS-EE-GGGTTSSS---EEEEEETT
T ss_pred CC--CCccccccccCCcccCceeeEEEEecCCCCEEEEeCCc-cE-EEeCCCC--ccceECccccCCCCceEEEEEcCCC
Confidence 22 11222221 234567899999988777766554 33 3444444 3445554455556778999998877
Q ss_pred cEEEEEecCCCCeEEEE
Q 043172 495 QILAICSTMKKNSLKLI 511 (564)
Q Consensus 495 ~~La~~s~~~d~~I~lw 511 (564)
+-++.|. +|.|--|
T Consensus 288 ~gf~lG~---~G~ll~~ 301 (302)
T PF14870_consen 288 KGFVLGQ---DGVLLRY 301 (302)
T ss_dssp EEEEE-S---TTEEEEE
T ss_pred ceEEECC---CcEEEEe
Confidence 7777776 5666443
No 383
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.45 E-value=0.002 Score=71.49 Aligned_cols=100 Identities=16% Similarity=0.119 Sum_probs=74.3
Q ss_pred CCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcc
Q 043172 274 AQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKS 353 (564)
Q Consensus 274 g~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~ 353 (564)
+..++.|+..|.+-..|+.+.-++..+ -....++|++++|+.+|..++.|-.+|.|.+||+..+...+.....++....
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~-ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGPLHQ-NERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccchhhc-CCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 456788888899998888764333222 2224579999999999999999999999999999999887776666666555
Q ss_pred eEEEEEcCCCCEEEEEeCCCe
Q 043172 354 LEFFEVSPDSSVIAFVGNEGY 374 (564)
Q Consensus 354 v~~~~~spdg~~la~~~~dg~ 374 (564)
+-.+.+..++..++++...|.
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc
Confidence 555666656666666666565
No 384
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.00061 Score=71.33 Aligned_cols=92 Identities=18% Similarity=0.132 Sum_probs=78.1
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEE-EEEEecCCCEEEEEeCCCeEEEEECCCCceeEEE
Q 043172 353 SLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVR-SLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRA 430 (564)
Q Consensus 353 ~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~-~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~ 430 (564)
.+..+.|+|.-.+||++..+|.|.+..+. .+.+.++. ++..++ +++|.|||+.|++|-.||+|++.|+.++..+..+
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~ 100 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSF 100 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceecc
Confidence 47789999999999999999999999987 77788888 666676 9999999999999999999999999999888774
Q ss_pred eecCCcceEEEEECC
Q 043172 431 VDEGCINGTALCTSP 445 (564)
Q Consensus 431 ~~~~~~~i~~l~~sp 445 (564)
.......+.++.|++
T Consensus 101 ~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 101 LFSVETDISKGIWDR 115 (665)
T ss_pred ccccccchheeeccc
Confidence 433444667777763
No 385
>PHA02713 hypothetical protein; Provisional
Probab=97.43 E-value=0.011 Score=64.49 Aligned_cols=191 Identities=13% Similarity=0.120 Sum_probs=103.8
Q ss_pred CCCEEEEEeCC------CeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCcE
Q 043172 317 DGSQAIIAGRR------KFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEG-----YILLVSSKTKEL 385 (564)
Q Consensus 317 dg~~l~s~~~d------g~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg-----~I~lwd~~t~~~ 385 (564)
++...++||.+ ..+..||+.+.....+..+..... .. ....-+|++.++||.++ .+..||..+.++
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~-~~--~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W 379 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRC-RF--SLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKW 379 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhh-ce--eEEEECCEEEEECCcCCCCCCceEEEEECCCCeE
Confidence 56666666643 358889998887655544433221 11 22233677778888653 488999998887
Q ss_pred EEEeeecCcEEEE-EEecCCCEEEEEeCCC-----------------------eEEEEECCCCceeEEEeecCCcceEEE
Q 043172 386 IGTLKMNGTVRSL-AFADDGKQLLSSGGDG-----------------------QVYHWDLRTRTCIHRAVDEGCINGTAL 441 (564)
Q Consensus 386 ~~~~~~~~~V~~l-~~spdg~~l~s~s~dg-----------------------~V~lwD~~~~~~~~~~~~~~~~~i~~l 441 (564)
...-....+.... +..-+|+..++||.++ .|..||..+.+-...-.........++
T Consensus 380 ~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~ 459 (557)
T PHA02713 380 KMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGV 459 (557)
T ss_pred EECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcE
Confidence 6533322211111 1122677777777542 477888877654321111111011122
Q ss_pred EECCCCCEEEEEeCC------CcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCC--eEEEEEc
Q 043172 442 CTSPDGTFFAAGSDS------GIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKN--SLKLIHI 513 (564)
Q Consensus 442 ~~sp~g~~lasgs~d------g~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~--~I~lwdl 513 (564)
+ .-+++..++|+.+ ..|..||..+. ..+..+..+.........+.+ +|.+.++|+. ++ .+..||.
T Consensus 460 ~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~--~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~--~~~~~~e~yd~ 532 (557)
T PHA02713 460 V-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTY--NGWELITTTESRLSALHTILH--DNTIMMLHCY--ESYMLQDTFNV 532 (557)
T ss_pred E-EECCEEEEEeCCCCCCccceeEEEecCCCC--CCeeEccccCcccccceeEEE--CCEEEEEeee--cceeehhhcCc
Confidence 2 2356777777654 24678988751 123444444433333333333 6788888887 55 5666666
Q ss_pred CCCc
Q 043172 514 PSYN 517 (564)
Q Consensus 514 ~s~~ 517 (564)
.+.+
T Consensus 533 ~~~~ 536 (557)
T PHA02713 533 YTYE 536 (557)
T ss_pred cccc
Confidence 6543
No 386
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.43 E-value=0.11 Score=50.25 Aligned_cols=183 Identities=15% Similarity=0.155 Sum_probs=113.5
Q ss_pred ceEEEEEcCCCCEEEEEeCCC--eEEEEECCCCcEEEEeeecCc--EEEEEEecCCCEEEEEeCCCeEEEEECCCCceeE
Q 043172 353 SLEFFEVSPDSSVIAFVGNEG--YILLVSSKTKELIGTLKMNGT--VRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIH 428 (564)
Q Consensus 353 ~v~~~~~spdg~~la~~~~dg--~I~lwd~~t~~~~~~~~~~~~--V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~ 428 (564)
-...+.|..+|.++-+.|.-| .|+.+|+.+++.......+.. --.++... ++.....-.++...+||..+.+.+.
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~~f~yd~~tl~~~~ 124 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEGTGFVYDPNTLKKIG 124 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSSEEEEEETTTTEEEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCCeEEEEccccceEEE
Confidence 356788878888888888766 799999999998877764332 34455553 3444445568999999999999988
Q ss_pred EEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccc-----cccceeEEEEcCCCcEEEEEecC
Q 043172 429 RAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIEN-----LTTKVDFMKFNNDAQILAICSTM 503 (564)
Q Consensus 429 ~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~-----~~~~I~~l~fspdg~~La~~s~~ 503 (564)
++...+. ...++ .++..|+....+..+.++|..+. +.++++.- ....++-+.|- +|.+.|= -+
T Consensus 125 ~~~y~~E--GWGLt--~dg~~Li~SDGS~~L~~~dP~~f-----~~~~~i~V~~~g~pv~~LNELE~i-~G~IyAN--VW 192 (264)
T PF05096_consen 125 TFPYPGE--GWGLT--SDGKRLIMSDGSSRLYFLDPETF-----KEVRTIQVTDNGRPVSNLNELEYI-NGKIYAN--VW 192 (264)
T ss_dssp EEE-SSS----EEE--ECSSCEEEE-SSSEEEEE-TTT------SEEEEEE-EETTEE---EEEEEEE-TTEEEEE--ET
T ss_pred EEecCCc--ceEEE--cCCCEEEEECCccceEEECCccc-----ceEEEEEEEECCEECCCcEeEEEE-cCEEEEE--eC
Confidence 8876543 35666 35666666666778999998876 44444431 12345557775 5544432 23
Q ss_pred CCCeEEEEEcCCCceeccCCC------------CCCCCCCcEEEEEeCCCCEEEEEc
Q 043172 504 KKNSLKLIHIPSYNVFSNWPP------------ANRNLQYPRCLDFSPGGGFMAVGN 548 (564)
Q Consensus 504 ~d~~I~lwdl~s~~~~~~~~~------------~~~~~~~V~~l~fspdg~~Lasgs 548 (564)
....|...|..+|.+...+.. ......-.+.++|.|....|.+.+
T Consensus 193 ~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 193 QTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp TSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred CCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 367888889888887653311 111134579999998766554443
No 387
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.40 E-value=0.062 Score=55.77 Aligned_cols=81 Identities=9% Similarity=0.112 Sum_probs=54.9
Q ss_pred cccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCC-CCCcEEEEEeCC--------------CCEE-
Q 043172 481 LTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRN-LQYPRCLDFSPG--------------GGFM- 544 (564)
Q Consensus 481 ~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~-~~~V~~l~fspd--------------g~~L- 544 (564)
....+.+|..+|.+++.|+... -|.|.|+|+.++..++.|.....- .+.+....-... ..+|
T Consensus 306 ~~R~~~~i~~sP~~~laA~tDs--lGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~Lv 383 (415)
T PF14655_consen 306 SKREGESICLSPSGRLAAVTDS--LGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLV 383 (415)
T ss_pred CCceEEEEEECCCCCEEEEEcC--CCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEE
Confidence 3455788999999998887654 799999999999999988776431 111111111111 1233
Q ss_pred EEEcCCCeEEEEEcCCCCC
Q 043172 545 AVGNAAGKVFLYKLNHYHH 563 (564)
Q Consensus 545 asgs~dG~V~lw~l~~~~~ 563 (564)
+-+-..|.|-||.++++.+
T Consensus 384 IyaprRg~lEvW~~~~g~R 402 (415)
T PF14655_consen 384 IYAPRRGILEVWSMRQGPR 402 (415)
T ss_pred EEeccCCeEEEEecCCCCE
Confidence 3556789999999998764
No 388
>PRK10115 protease 2; Provisional
Probab=97.37 E-value=0.28 Score=55.07 Aligned_cols=255 Identities=10% Similarity=0.083 Sum_probs=129.5
Q ss_pred eeeecccCC-CCCC-CCeeEEEEcCCCCEEEEEeCC-----CcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEE
Q 043172 250 SRLIDANAD-ESST-GPINSVQFHRNAQLLLVAGLD-----RRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAI 322 (564)
Q Consensus 250 ~rl~~~~~~-~~h~-~~V~~l~fspdg~~l~s~s~d-----g~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~ 322 (564)
+-+.|.|.. .++. -.+..+.|+|+|++|+.+... ..|++.++.++.. ....+.. .. ..++|+++++.|+
T Consensus 112 ~~llD~n~~a~~~~~~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~-l~~~i~~--~~-~~~~w~~D~~~~~ 187 (686)
T PRK10115 112 ETLLDANKRAAHSEFYTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNW-YPELLDN--VE-PSFVWANDSWTFY 187 (686)
T ss_pred EEEEcchhhccCCCcEEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCC-CCccccC--cc-eEEEEeeCCCEEE
Confidence 345555544 2232 457788999999988876432 2577777764321 1112221 11 4689999998887
Q ss_pred EEeCC------CeEEEEECCCC--ceeeeccccccCCcceE-EEEEcCCCCEEEEEeC---CCeEEEEEC--CCCcEEEE
Q 043172 323 IAGRR------KFFYSLDLVKA--KADKIGPLVGREEKSLE-FFEVSPDSSVIAFVGN---EGYILLVSS--KTKELIGT 388 (564)
Q Consensus 323 s~~~d------g~i~iwdl~~~--~~~~~~~~~~~~~~~v~-~~~~spdg~~la~~~~---dg~I~lwd~--~t~~~~~~ 388 (564)
.+..+ ..|+.+++.++ +...+.. .... ... .+..+.+++++++.+. ++.+.+++. .++.+...
T Consensus 188 y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~--e~~~-~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~ 264 (686)
T PRK10115 188 YVRKHPVTLLPYQVWRHTIGTPASQDELVYE--EKDD-TFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVF 264 (686)
T ss_pred EEEecCCCCCCCEEEEEECCCChhHCeEEEe--eCCC-CEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEE
Confidence 76532 36888899888 3222322 2111 222 3334448887765544 357888884 34443333
Q ss_pred eeecC-cEEEEEEecCCCEEEEEeC---CCeEEEEECCCCceeEEEeec-CCcceEEEEECCCCCEEEEEeCCCcEEEEe
Q 043172 389 LKMNG-TVRSLAFADDGKQLLSSGG---DGQVYHWDLRTRTCIHRAVDE-GCINGTALCTSPDGTFFAAGSDSGIVNVYN 463 (564)
Q Consensus 389 ~~~~~-~V~~l~~spdg~~l~s~s~---dg~V~lwD~~~~~~~~~~~~~-~~~~i~~l~~sp~g~~lasgs~dg~V~iwd 463 (564)
+.... ....+. +..+.+++.... ...|...++........+..+ ....+..+.+. .+.++++...+|.-.++-
T Consensus 265 ~~~~~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~ 342 (686)
T PRK10115 265 LPRRKDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQ 342 (686)
T ss_pred EECCCCCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEE
Confidence 33332 222222 323333333322 234555555521112233333 23456777776 334566666677655555
Q ss_pred CCcccCCcceeeEEcc-ccccceeEEEEc--CCCc-EEE-EEecCCCCeEEEEEcCCCc
Q 043172 464 RQEFLGGKRKPIKTIE-NLTTKVDFMKFN--NDAQ-ILA-ICSTMKKNSLKLIHIPSYN 517 (564)
Q Consensus 464 ~~~~~~~~~~~~~~~~-~~~~~I~~l~fs--pdg~-~La-~~s~~~d~~I~lwdl~s~~ 517 (564)
+... . ..+..+. .....+..+.++ +++. +++ ..|....+.+..+++.+++
T Consensus 343 ~~~~--~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 343 INRK--T--REVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EcCC--C--CceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 4421 0 2233332 222223334444 4443 333 3344345788888887654
No 389
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.35 E-value=0.013 Score=56.00 Aligned_cols=190 Identities=15% Similarity=0.185 Sum_probs=121.2
Q ss_pred EEcCCCCEEEEEeC-----CCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeC-----------------
Q 043172 269 QFHRNAQLLLVAGL-----DRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGR----------------- 326 (564)
Q Consensus 269 ~fspdg~~l~s~s~-----dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~----------------- 326 (564)
.|||||.+|+..-. -|.|-|||.. .....+-.+..|.-....+.|.+||+.|+.+..
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r-~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNlds 198 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAR-EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDS 198 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecc-cccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhh
Confidence 68999999987643 3789999987 345667777888888889999999999987642
Q ss_pred -CCeEEEEECCCCceeeecccc--ccCCcceEEEEEcCCCCEEEEEeCCCe-----EEEEECCCCcEEEEee--------
Q 043172 327 -RKFFYSLDLVKAKADKIGPLV--GREEKSLEFFEVSPDSSVIAFVGNEGY-----ILLVSSKTKELIGTLK-------- 390 (564)
Q Consensus 327 -dg~i~iwdl~~~~~~~~~~~~--~~~~~~v~~~~~spdg~~la~~~~dg~-----I~lwd~~t~~~~~~~~-------- 390 (564)
...+.+.|..+|.......++ .++ -++..++..++|..++-+-..|. -.+=-...++.+..+.
T Consensus 199 MePSlvlld~atG~liekh~Lp~~l~~-lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~ 277 (366)
T COG3490 199 MEPSLVLLDAATGNLIEKHTLPASLRQ-LSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAA 277 (366)
T ss_pred cCccEEEEeccccchhhhccCchhhhh-cceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHH
Confidence 112445565666654444444 223 36888999999887765543331 1111123344443333
Q ss_pred ecCcEEEEEEecCCCEEEEEeC-CCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 043172 391 MNGTVRSLAFADDGKQLLSSGG-DGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQ 465 (564)
Q Consensus 391 ~~~~V~~l~~spdg~~l~s~s~-dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~ 465 (564)
....|-+++.+.+..+++..+- .+...+||..++..+..-...... .++ +...-|++.+.+|.+.+|...
T Consensus 278 ~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~daa---Gva--~~~~gf~vssg~G~~~~~s~~ 348 (366)
T COG3490 278 FANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPDAA---GVA--AAKGGFAVSSGQGRIIFYSRA 348 (366)
T ss_pred HHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccccccc---cce--eccCceEEecCCceEEecccc
Confidence 2346778888876555555554 446779999999987654433222 222 233446677788888888544
No 390
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=97.29 E-value=0.3 Score=50.80 Aligned_cols=278 Identities=14% Similarity=0.106 Sum_probs=133.7
Q ss_pred CCCeeEEEEcC-CCCEEEEEeCCCcEEEEEecCC-CCceeEEEEe-----CCcCeEEEEEeeCCCEEEEEeCCCeEEEEE
Q 043172 262 TGPINSVQFHR-NAQLLLVAGLDRRLRFFQIDGK-RNTKIQSIFL-----EDCPVRKASFLPDGSQAIIAGRRKFFYSLD 334 (564)
Q Consensus 262 ~~~V~~l~fsp-dg~~l~s~s~dg~I~lwd~~~~-~~~~~~~~~~-----~~~~I~~l~fspdg~~l~s~~~dg~i~iwd 334 (564)
..++.+|.|-| +.+..+..|..|.|.- .-+++ +.... .... ...+..++.|. + +..++++..+.|..-
T Consensus 87 ~~~L~~V~F~~~d~~~GwAVG~~G~IL~-T~DGG~tW~~~-~~~~~~~~~~~~~l~~v~f~-~-~~g~~vG~~G~il~T- 161 (398)
T PLN00033 87 GVVLLDIAFVPDDPTHGFLLGTRQTLLE-TKDGGKTWVPR-SIPSAEDEDFNYRFNSISFK-G-KEGWIIGKPAILLHT- 161 (398)
T ss_pred CCceEEEEeccCCCCEEEEEcCCCEEEE-EcCCCCCceEC-ccCcccccccccceeeeEEE-C-CEEEEEcCceEEEEE-
Confidence 45899999965 5555555555664432 22322 22211 1111 01246777775 3 445555666644433
Q ss_pred CCCCce-eeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe--------------------eecC
Q 043172 335 LVKAKA-DKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTL--------------------KMNG 393 (564)
Q Consensus 335 l~~~~~-~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~--------------------~~~~ 393 (564)
...|+. ..+........ ....+.....+..++ .+..|.|..-+-....+.... ...+
T Consensus 162 ~DgG~tW~~~~~~~~~p~-~~~~i~~~~~~~~~i-vg~~G~v~~S~D~G~tW~~~~~~t~~~~l~~~~~s~~~g~~~y~G 239 (398)
T PLN00033 162 SDGGETWERIPLSPKLPG-EPVLIKATGPKSAEM-VTDEGAIYVTSNAGRNWKAAVEETVSATLNRTVSSGISGASYYTG 239 (398)
T ss_pred cCCCCCceECccccCCCC-CceEEEEECCCceEE-EeccceEEEECCCCCCceEcccccccccccccccccccccceecc
Confidence 233332 11111000011 122233333333333 335676655432222222210 0112
Q ss_pred cEEEEEEecCCCEEEEEeCCCeEE-EEECCCCcee-EEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCc
Q 043172 394 TVRSLAFADDGKQLLSSGGDGQVY-HWDLRTRTCI-HRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGK 471 (564)
Q Consensus 394 ~V~~l~~spdg~~l~s~s~dg~V~-lwD~~~~~~~-~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~ 471 (564)
....+..++++.+++++.. |.++ -||-. ... ..........++.+.+.+++.+++++ ..|.+.+ ....+....
T Consensus 240 sf~~v~~~~dG~~~~vg~~-G~~~~s~d~G--~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~ 314 (398)
T PLN00033 240 TFSTVNRSPDGDYVAVSSR-GNFYLTWEPG--QPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEE 314 (398)
T ss_pred ceeeEEEcCCCCEEEEECC-ccEEEecCCC--CcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCccc
Confidence 3444566677776666544 4433 34432 211 12222334467889999999877766 4555433 333220000
Q ss_pred ceeeEEccc--cccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcC
Q 043172 472 RKPIKTIEN--LTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNA 549 (564)
Q Consensus 472 ~~~~~~~~~--~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~ 549 (564)
...+..+.. ....+..+.|.+++..+++|. .|.+... ...++.....+....-......+.|.++++.+++| .
T Consensus 315 ~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~---~G~v~~s-~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~ 389 (398)
T PLN00033 315 DFDFEEADIKSRGFGILDVGYRSKKEAWAAGG---SGILLRS-TDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-N 389 (398)
T ss_pred ccceeecccCCCCcceEEEEEcCCCcEEEEEC---CCcEEEe-CCCCcceeEccccCCCCcceeEEEEcCCCceEEEe-C
Confidence 002222221 224588999999998887776 4555444 44454444332222222457799998877766655 6
Q ss_pred CCeEEEE
Q 043172 550 AGKVFLY 556 (564)
Q Consensus 550 dG~V~lw 556 (564)
+|.|.-|
T Consensus 390 ~G~il~~ 396 (398)
T PLN00033 390 DGVLLRY 396 (398)
T ss_pred CcEEEEe
Confidence 8877655
No 391
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.28 E-value=0.022 Score=62.26 Aligned_cols=226 Identities=16% Similarity=0.150 Sum_probs=124.0
Q ss_pred CCCEEEEEeCC------CeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCC------CeEEEEECCCCc
Q 043172 317 DGSQAIIAGRR------KFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNE------GYILLVSSKTKE 384 (564)
Q Consensus 317 dg~~l~s~~~d------g~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d------g~I~lwd~~t~~ 384 (564)
.+..+++||.. ..+..||..++.......+..... -.++++. ++.+.++||.+ ..+..||..+.+
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~--~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRC--RVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccc--cccEEEE-CCEEEEEccccCCCcccceEEEecCCCCc
Confidence 34455566644 467889999887766655553332 2333333 45777888888 368899999999
Q ss_pred EEEEeeecCcEEEEEEe-cCCCEEEEEeCCC-----eEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCC-
Q 043172 385 LIGTLKMNGTVRSLAFA-DDGKQLLSSGGDG-----QVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSG- 457 (564)
Q Consensus 385 ~~~~~~~~~~V~~l~~s-pdg~~l~s~s~dg-----~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg- 457 (564)
+...-.....-..+... -+|...++||.|| +|-.||..+.+.-..-..........+ ..-+|...++|+.++
T Consensus 361 W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv-~~~~g~iYi~GG~~~~ 439 (571)
T KOG4441|consen 361 WTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGV-AVLGGKLYIIGGGDGS 439 (571)
T ss_pred eeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEE-EEECCEEEEEcCcCCC
Confidence 87744433322222222 2678888888886 477788876553222111111111111 123778888887554
Q ss_pred -----cEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCC---CCeEEEEEcCCCceeccCCCCCCCC
Q 043172 458 -----IVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMK---KNSLKLIHIPSYNVFSNWPPANRNL 529 (564)
Q Consensus 458 -----~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~---d~~I~lwdl~s~~~~~~~~~~~~~~ 529 (564)
+|..||..+. .+..+..+........ ++ .-++.+.++|+.+. -.+|..||..+.+.... .....+.
T Consensus 440 ~~~l~sve~YDP~t~---~W~~~~~M~~~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v-~~m~~~r 513 (571)
T KOG4441|consen 440 SNCLNSVECYDPETN---TWTLIAPMNTRRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMV-APMTSPR 513 (571)
T ss_pred ccccceEEEEcCCCC---ceeecCCcccccccce-EE-EECCEEEEECCccCCCccceEEEEcCCCCceeEc-ccCcccc
Confidence 5788888774 3344333332222222 22 23677777777632 12367788776543322 1111121
Q ss_pred CCcEEEEEeCCCCEEEEEcCCCeEE
Q 043172 530 QYPRCLDFSPGGGFMAVGNAAGKVF 554 (564)
Q Consensus 530 ~~V~~l~fspdg~~Lasgs~dG~V~ 554 (564)
..+... .-++...++|+.+|.-+
T Consensus 514 s~~g~~--~~~~~ly~vGG~~~~~~ 536 (571)
T KOG4441|consen 514 SAVGVV--VLGGKLYAVGGFDGNNN 536 (571)
T ss_pred ccccEE--EECCEEEEEecccCccc
Confidence 222222 22567778888887533
No 392
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.27 E-value=0.2 Score=48.38 Aligned_cols=183 Identities=20% Similarity=0.183 Sum_probs=113.5
Q ss_pred CeEEEEEeeCCCEEEEEeCCC--eEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE
Q 043172 308 PVRKASFLPDGSQAIIAGRRK--FFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKEL 385 (564)
Q Consensus 308 ~I~~l~fspdg~~l~s~~~dg--~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~ 385 (564)
-...+.|..+|..+-++|.-| .|+.+|+.+++......+.... --..+++. +++.....=.++...+||..+.+.
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~--FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRY--FGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKK 122 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT----EEEEEEE-TTEEEEEESSSSEEEEEETTTTEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccc--cceeEEEE-CCEEEEEEecCCeEEEEccccceE
Confidence 345678877888888887655 7999999999886655554322 12345544 344555666789999999999999
Q ss_pred EEEeeecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeec-CCc---ceEEEEECCCCCEEEEEeCCCcEEE
Q 043172 386 IGTLKMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDE-GCI---NGTALCTSPDGTFFAAGSDSGIVNV 461 (564)
Q Consensus 386 ~~~~~~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~-~~~---~i~~l~~sp~g~~lasgs~dg~V~i 461 (564)
+.++...+.=..++ .++..|+.+.....++++|..+.+.+..+... ... .+.-+.|- +|...|=.-....|..
T Consensus 123 ~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~ 199 (264)
T PF05096_consen 123 IGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVR 199 (264)
T ss_dssp EEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEE
T ss_pred EEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEE
Confidence 99998777667777 46777887777789999999987776665432 111 23344443 4544444444555666
Q ss_pred EeCCcccCCcceeeEEcc---------------ccccceeEEEEcCCCcEEEEEe
Q 043172 462 YNRQEFLGGKRKPIKTIE---------------NLTTKVDFMKFNNDAQILAICS 501 (564)
Q Consensus 462 wd~~~~~~~~~~~~~~~~---------------~~~~~I~~l~fspdg~~La~~s 501 (564)
.|..++ ..+..+. ....-.+.|+|.|.++.|.+.+
T Consensus 200 Idp~tG-----~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 200 IDPETG-----KVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EETTT------BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EeCCCC-----eEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 666655 3333221 0134578899998876666655
No 393
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.25 E-value=0.2 Score=51.05 Aligned_cols=237 Identities=15% Similarity=0.148 Sum_probs=117.9
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEE----EeCCcCeEEEEEeeC---CCEEEEEeCC---------
Q 043172 264 PINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSI----FLEDCPVRKASFLPD---GSQAIIAGRR--------- 327 (564)
Q Consensus 264 ~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~----~~~~~~I~~l~fspd---g~~l~s~~~d--------- 327 (564)
..++|+|.|+|.+|++ ...|.|++++.++.....+..+ .........++|+|+ ..+|++....
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 3578999999987665 5699999998433221223332 123456789999984 3455444321
Q ss_pred CeEEEEECCCC--cee---ee-ccccc--cCCcceEEEEEcCCCCEEEEEeCC-------------CeEEEEECCCCc--
Q 043172 328 KFFYSLDLVKA--KAD---KI-GPLVG--REEKSLEFFEVSPDSSVIAFVGNE-------------GYILLVSSKTKE-- 384 (564)
Q Consensus 328 g~i~iwdl~~~--~~~---~~-~~~~~--~~~~~v~~~~~spdg~~la~~~~d-------------g~I~lwd~~t~~-- 384 (564)
..|.-|.+..+ ... .+ ..+.. ........+.|.|+|.+.++.+.. |.|.-.+....-
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~ 161 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPA 161 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-T
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCCC
Confidence 24555555443 111 11 11111 122346779999999777776543 445545533210
Q ss_pred ----------EEEEee-ecCcEEEEEEecC-CCEEEEE-eCCC--eEEEEECCCCc------------------------
Q 043172 385 ----------LIGTLK-MNGTVRSLAFADD-GKQLLSS-GGDG--QVYHWDLRTRT------------------------ 425 (564)
Q Consensus 385 ----------~~~~~~-~~~~V~~l~~spd-g~~l~s~-s~dg--~V~lwD~~~~~------------------------ 425 (564)
....+. .-.....++|+|. |.++++= +.++ .|.+. ..+.
T Consensus 162 dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i--~~G~nYGWP~~~~~~~~~~~~~~~~~~~ 239 (331)
T PF07995_consen 162 DNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRI--EPGGNYGWPYCEGGPKYSGPPIGDAPSC 239 (331)
T ss_dssp TSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE---TT-B--TTTBSSSCSTTSS-ECTGSS-
T ss_pred CCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEe--ccCCcCCCCCCcCCCCCCCCccccccCC
Confidence 000111 1224568999998 6544332 2222 23322 1111
Q ss_pred -----eeEEEeecCCcceEEEEECC-------CCCEEEEEeCCCcEEEEeCCcccCCcceeeEE-ccccccceeEEEEcC
Q 043172 426 -----CIHRAVDEGCINGTALCTSP-------DGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKT-IENLTTKVDFMKFNN 492 (564)
Q Consensus 426 -----~~~~~~~~~~~~i~~l~~sp-------~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~-~~~~~~~I~~l~fsp 492 (564)
++..+ .....++.+.|-. .|.+|++.-..+.|....+... ........ +......+..|++.|
T Consensus 240 ~~~~~P~~~~--~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~r~~~v~~~p 315 (331)
T PF07995_consen 240 PGFVPPVFAY--PPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDED--GSVTEEEEFLGGFGGRPRDVAQGP 315 (331)
T ss_dssp TTS---SEEE--TTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETT--EEEEEEEEECTTSSS-EEEEEEET
T ss_pred CCcCccceee--cCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecC--CCccceEEccccCCCCceEEEEcC
Confidence 11111 1123445566543 3456666666677777777543 11111222 234445789999999
Q ss_pred CCcEEEEEecCCCCeEE
Q 043172 493 DAQILAICSTMKKNSLK 509 (564)
Q Consensus 493 dg~~La~~s~~~d~~I~ 509 (564)
||.++++... +|.|.
T Consensus 316 DG~Lyv~~d~--~G~iy 330 (331)
T PF07995_consen 316 DGALYVSDDS--DGKIY 330 (331)
T ss_dssp TSEEEEEE-T--TTTEE
T ss_pred CCeEEEEECC--CCeEe
Confidence 9998887775 66653
No 394
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.22 E-value=0.15 Score=47.57 Aligned_cols=219 Identities=18% Similarity=0.175 Sum_probs=119.0
Q ss_pred CCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCC---CEEEEEeCCCeEEEEECCCCceeeeccccc--
Q 043172 274 AQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDG---SQAIIAGRRKFFYSLDLVKAKADKIGPLVG-- 348 (564)
Q Consensus 274 g~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg---~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~-- 348 (564)
+.++.+-=..+.|.-||+... .+........++.++.|--.+ .+.+.++..-.|.-||..........++..
T Consensus 27 ~sLl~VDi~ag~v~r~D~~qn---~v~ra~ie~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~ 103 (310)
T KOG4499|consen 27 QSLLYVDIEAGEVHRYDIEQN---KVYRAKIEGPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQ 103 (310)
T ss_pred ceEEEEEeccCceehhhhhhh---heEEEEEecCcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccC
Confidence 445555555677777888643 233333223334444443222 233333444345557744332221222111
Q ss_pred --cCCcceEEEEEcCCCCEEEEEeC---------CCeEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEE-EeCCCeE
Q 043172 349 --REEKSLEFFEVSPDSSVIAFVGN---------EGYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLS-SGGDGQV 416 (564)
Q Consensus 349 --~~~~~v~~~~~spdg~~la~~~~---------dg~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s-~s~dg~V 416 (564)
......+.-.++|+|++++-.-. .|.++.|-+. ++.-.....-+--+.++|+.+.+.++. -+.+-+|
T Consensus 104 ~d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~-h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V 182 (310)
T KOG4499|consen 104 PDRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG-HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEV 182 (310)
T ss_pred chHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccC-CCceeeehhccCCccccccccCcEEEEEccCceEE
Confidence 11124556778999998432211 1445555332 222111112234467899887766554 4557788
Q ss_pred EEEE--CCCCce-----eEEEee---cCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEcccccccee
Q 043172 417 YHWD--LRTRTC-----IHRAVD---EGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVD 486 (564)
Q Consensus 417 ~lwD--~~~~~~-----~~~~~~---~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~ 486 (564)
.-|| ..++.. +..+.. ......-.+++...|.+.++.-+.|+|...|..++ +.+..+.-.+..|+
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tG-----K~L~eiklPt~qit 257 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTG-----KILLEIKLPTPQIT 257 (310)
T ss_pred eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCC-----cEEEEEEcCCCceE
Confidence 7777 554432 222221 11111234555668888888888999999999998 89999888899999
Q ss_pred EEEEcC-CCcEEEEEe
Q 043172 487 FMKFNN-DAQILAICS 501 (564)
Q Consensus 487 ~l~fsp-dg~~La~~s 501 (564)
+++|-- +-.+|++..
T Consensus 258 sccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 258 SCCFGGKNLDILYVTT 273 (310)
T ss_pred EEEecCCCccEEEEEe
Confidence 999964 333444433
No 395
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.20 E-value=0.03 Score=46.26 Aligned_cols=101 Identities=16% Similarity=0.148 Sum_probs=70.5
Q ss_pred eEEEEEcC---CC-CEEEEEeCCCeEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEE
Q 043172 354 LEFFEVSP---DS-SVIAFVGNEGYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHR 429 (564)
Q Consensus 354 v~~~~~sp---dg-~~la~~~~dg~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~ 429 (564)
|+++++.. +| +.|++|+.|..|++|+ ..+.+..+.....|++++-... ..++.+..+|+|-+|+-.. .+.+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~--RlWR 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ--RLWR 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCcc--eeee
Confidence 44555543 33 5799999999999996 4577888888888999988766 5688889999999998632 2223
Q ss_pred EeecCCcceEEEEEC-CC--C-CEEEEEeCCCcEEE
Q 043172 430 AVDEGCINGTALCTS-PD--G-TFFAAGSDSGIVNV 461 (564)
Q Consensus 430 ~~~~~~~~i~~l~~s-p~--g-~~lasgs~dg~V~i 461 (564)
.. ....++++++. .+ | .-|++|-.+|.|-+
T Consensus 77 iK--SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 77 IK--SKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred ec--cCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 33 22335555543 23 2 27889999998754
No 396
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.0021 Score=67.39 Aligned_cols=94 Identities=13% Similarity=0.100 Sum_probs=77.7
Q ss_pred cceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEcccccccee-EEEEcCCCcEEEEEecCCCCeEEEEEcC
Q 043172 436 INGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVD-FMKFNNDAQILAICSTMKKNSLKLIHIP 514 (564)
Q Consensus 436 ~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~-~l~fspdg~~La~~s~~~d~~I~lwdl~ 514 (564)
..+..+.|+|.-.++|++..+|.|-++.+. + +.+.++.-+.-.++ +++|.|||++||+|-. ||+|+|.|+.
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~-----qRlwtip~p~~~v~~sL~W~~DGkllaVg~k--dG~I~L~Dve 92 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-W-----QRLWTIPIPGENVTASLCWRPDGKLLAVGFK--DGTIRLHDVE 92 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-c-----ceeEeccCCCCccceeeeecCCCCEEEEEec--CCeEEEEEcc
Confidence 356788999999999999999999999887 4 88888887777777 9999999999999998 9999999999
Q ss_pred CCceeccCCCCCCCCCCcEEEEEeC
Q 043172 515 SYNVFSNWPPANRNLQYPRCLDFSP 539 (564)
Q Consensus 515 s~~~~~~~~~~~~~~~~V~~l~fsp 539 (564)
++..+...+.. ....|.++-|+|
T Consensus 93 ~~~~l~~~~~s--~e~~is~~~w~~ 115 (665)
T KOG4640|consen 93 KGGRLVSFLFS--VETDISKGIWDR 115 (665)
T ss_pred CCCceeccccc--cccchheeeccc
Confidence 98877754222 225577777763
No 397
>PHA03098 kelch-like protein; Provisional
Probab=97.16 E-value=0.021 Score=62.34 Aligned_cols=188 Identities=14% Similarity=0.135 Sum_probs=98.0
Q ss_pred CCCCEEEEEeCCC------cEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCC-----CeEEEEECCCCce
Q 043172 272 RNAQLLLVAGLDR------RLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRR-----KFFYSLDLVKAKA 340 (564)
Q Consensus 272 pdg~~l~s~s~dg------~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~d-----g~i~iwdl~~~~~ 340 (564)
.++.+++.||.++ .+..||........+..+.........+ .-++..++.||.+ ..+..||..+++.
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~--~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT--VFNNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE--EECCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 3566777777643 4556666543332222222111111122 2356666777754 3578899988877
Q ss_pred eeeccccccCCcceEEEEEcCCCCEEEEEeCC------CeEEEEECCCCcEEEEeeecCcE-EEEEEecCCCEEEEEeCC
Q 043172 341 DKIGPLVGREEKSLEFFEVSPDSSVIAFVGNE------GYILLVSSKTKELIGTLKMNGTV-RSLAFADDGKQLLSSGGD 413 (564)
Q Consensus 341 ~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d------g~I~lwd~~t~~~~~~~~~~~~V-~~l~~spdg~~l~s~s~d 413 (564)
.....++.... .. ++ ..-+++++++||.. ..+..||+.+.++...-....+. ...+...++..++.||.+
T Consensus 371 ~~~~~lp~~r~-~~-~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 447 (534)
T PHA03098 371 REEPPLIFPRY-NP-CV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGIS 447 (534)
T ss_pred eeCCCcCcCCc-cc-eE-EEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCcc
Confidence 65544433222 11 12 22356777777732 46889999888776533221111 111222356666666543
Q ss_pred --------CeEEEEECCCCceeEEEeec-CCcceEEEEECCCCCEEEEEeCC-----CcEEEEeCCc
Q 043172 414 --------GQVYHWDLRTRTCIHRAVDE-GCINGTALCTSPDGTFFAAGSDS-----GIVNVYNRQE 466 (564)
Q Consensus 414 --------g~V~lwD~~~~~~~~~~~~~-~~~~i~~l~~sp~g~~lasgs~d-----g~V~iwd~~~ 466 (564)
..+.+||..+++-...-... .......+.+ ++..++.|+.+ ..|.+||..+
T Consensus 448 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 448 YIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred CCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCC
Confidence 23889998876543221111 1111112222 66777777654 4688888776
No 398
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.16 E-value=0.062 Score=51.98 Aligned_cols=160 Identities=11% Similarity=0.128 Sum_probs=108.9
Q ss_pred CCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 043172 305 EDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKE 384 (564)
Q Consensus 305 ~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~ 384 (564)
-...+.++.|+|+.+.|++......-.||=-..|......++.+.+. ...+.+.-+|+++++--.++.++++.+....
T Consensus 84 ~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~D--pE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 84 ETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSD--PETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCC--hhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 34459999999999999999888877777777788877777777654 5778888888888877778889888776543
Q ss_pred EEEE-----ee-----e-cCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCc-ee--EEEeecC------CcceEEEEEC
Q 043172 385 LIGT-----LK-----M-NGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRT-CI--HRAVDEG------CINGTALCTS 444 (564)
Q Consensus 385 ~~~~-----~~-----~-~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~-~~--~~~~~~~------~~~i~~l~~s 444 (564)
.+.. +. + +...-.++|.|....|+.+-.-.-+.||.+.... .+ +....+. -..+.++.|+
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~ 241 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFN 241 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceec
Confidence 2211 11 2 4567899999988888888766656555554222 11 1111110 1134567777
Q ss_pred CC-CCEEEEEeCCCcEEEEeCCc
Q 043172 445 PD-GTFFAAGSDSGIVNVYNRQE 466 (564)
Q Consensus 445 p~-g~~lasgs~dg~V~iwd~~~ 466 (564)
+. +.+++.+.+++.+.-.|...
T Consensus 242 ~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 242 AITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred CCCCcEEEEecCCceEEEEecCC
Confidence 64 55666677788887777765
No 399
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=97.10 E-value=0.28 Score=50.72 Aligned_cols=146 Identities=15% Similarity=0.114 Sum_probs=81.6
Q ss_pred CCeeEEEEcCCCCEEEEEe-----------CCC-cEEEEEecCCCC--ceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCC
Q 043172 263 GPINSVQFHRNAQLLLVAG-----------LDR-RLRFFQIDGKRN--TKIQSIFLEDCPVRKASFLPDGSQAIIAGRRK 328 (564)
Q Consensus 263 ~~V~~l~fspdg~~l~s~s-----------~dg-~I~lwd~~~~~~--~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg 328 (564)
.....|+|.++|+++++-. ..+ .|.+++-..... .....+...-.....++|.++| |++++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 4567899999999887753 123 566665322111 2233333333445789999888 44444443
Q ss_pred eEEEE-ECCCC-----ceeee-cccccc---CCcceEEEEEcCCCCEEEEEeCC-------------------CeEEEEE
Q 043172 329 FFYSL-DLVKA-----KADKI-GPLVGR---EEKSLEFFEVSPDSSVIAFVGNE-------------------GYILLVS 379 (564)
Q Consensus 329 ~i~iw-dl~~~-----~~~~~-~~~~~~---~~~~v~~~~~spdg~~la~~~~d-------------------g~I~lwd 379 (564)
|..| +.... +...+ ..+... ....+..++|.|+|.+.++.+.. |.|.-++
T Consensus 92 -i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 92 -ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred -EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 4434 44321 21112 112221 12347789999999876655521 4566666
Q ss_pred CCCCcEEEEee-ecCcEEEEEEecCCCEEEEEeC
Q 043172 380 SKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGG 412 (564)
Q Consensus 380 ~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~ 412 (564)
..++... .+. .-.....++|+|+|+++++-..
T Consensus 171 pdg~~~e-~~a~G~rnp~Gl~~d~~G~l~~tdn~ 203 (367)
T TIGR02604 171 PDGGKLR-VVAHGFQNPYGHSVDSWGDVFFCDND 203 (367)
T ss_pred cCCCeEE-EEecCcCCCccceECCCCCEEEEccC
Confidence 6554432 222 2234678999999988766443
No 400
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.09 E-value=0.62 Score=50.64 Aligned_cols=150 Identities=17% Similarity=0.151 Sum_probs=86.1
Q ss_pred CEEEEEeCCCcEEEEEecCCCCceeEEEEeC--C--cCeEEEEEeeCCCEEEEEe------CCCeEEEEECCCCceeeec
Q 043172 275 QLLLVAGLDRRLRFFQIDGKRNTKIQSIFLE--D--CPVRKASFLPDGSQAIIAG------RRKFFYSLDLVKAKADKIG 344 (564)
Q Consensus 275 ~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~--~--~~I~~l~fspdg~~l~s~~------~dg~i~iwdl~~~~~~~~~ 344 (564)
..++.++.++.|.-.|..++ +.+-..... . ..+.+.-.-.++ .|+++. .++.|+.+|..+|+..-..
T Consensus 121 ~~v~v~t~dg~l~ALDa~TG--k~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTG--KVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred CEEEEEcCCCEEEEEECCCC--CEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 45667777887777776533 343332211 1 111111111133 555553 2689999999998764321
Q ss_pred ccc-cc---------------------------CCcceE-EEEEcCCCCEEEEEeCC----------------CeEEEEE
Q 043172 345 PLV-GR---------------------------EEKSLE-FFEVSPDSSVIAFVGNE----------------GYILLVS 379 (564)
Q Consensus 345 ~~~-~~---------------------------~~~~v~-~~~~spdg~~la~~~~d----------------g~I~lwd 379 (564)
... .. ....+. .+++.|...+++.+..+ ..|.-.|
T Consensus 198 ~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld 277 (527)
T TIGR03075 198 YTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARD 277 (527)
T ss_pred cCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEc
Confidence 111 10 011111 34666666666665421 2688899
Q ss_pred CCCCcEEEEee---ec-------CcEEEEEEecCCC---EEEEEeCCCeEEEEECCCCcee
Q 043172 380 SKTKELIGTLK---MN-------GTVRSLAFADDGK---QLLSSGGDGQVYHWDLRTRTCI 427 (564)
Q Consensus 380 ~~t~~~~~~~~---~~-------~~V~~l~~spdg~---~l~s~s~dg~V~lwD~~~~~~~ 427 (564)
++||+....++ |. ....-+.+..+|+ .++.++.+|.+++.|..+++.+
T Consensus 278 ~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 278 PDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred cccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 99999988777 21 1112222334665 7788999999999999999876
No 401
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.07 E-value=0.0018 Score=71.82 Aligned_cols=105 Identities=12% Similarity=0.142 Sum_probs=83.7
Q ss_pred CCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCC
Q 043172 446 DGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPA 525 (564)
Q Consensus 446 ~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~ 525 (564)
.+.+++.|+..|.|-..|+... ..++..-....++|++++|+.+|.+++.|-. +|.|.+||+..+..++.+...
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n----L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~--~G~V~v~D~~~~k~l~~i~e~ 171 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN----LGPLHQNERVQGPVTSVAFNQDGSLLLAGLG--DGHVTVWDMHRAKILKVITEH 171 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc----cchhhcCCccCCcceeeEecCCCceeccccC--CCcEEEEEccCCcceeeeeec
Confidence 4568999999999999998763 2444455556789999999999999999988 999999999999888877666
Q ss_pred CCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEc
Q 043172 526 NRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKL 558 (564)
Q Consensus 526 ~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l 558 (564)
..+...|-.+.+..++..+.++...|. +|.+
T Consensus 172 ~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 172 GAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred CCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 655566666667777778888888886 5665
No 402
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.97 E-value=0.43 Score=46.68 Aligned_cols=222 Identities=11% Similarity=0.141 Sum_probs=123.8
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEEec-----CCCCceeEEEEeC-----CcCeEEEEEeeCCC------------EEE
Q 043172 265 INSVQFHRNAQLLLVAGLDRRLRFFQID-----GKRNTKIQSIFLE-----DCPVRKASFLPDGS------------QAI 322 (564)
Q Consensus 265 V~~l~fspdg~~l~s~s~dg~I~lwd~~-----~~~~~~~~~~~~~-----~~~I~~l~fspdg~------------~l~ 322 (564)
-+.|+|+|.+.+-++....+...+|+.. +...+.+-++... ....+.+.|+.... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 5789999999888888888999999987 3333444444421 23566777764332 356
Q ss_pred EEeCCCeEEEEECCCCce---eeecccc-ccCCcceEEEEEcCC--CCEEEEEe-CCCeEEEEECCCCcEE--EEeeec-
Q 043172 323 IAGRRKFFYSLDLVKAKA---DKIGPLV-GREEKSLEFFEVSPD--SSVIAFVG-NEGYILLVSSKTKELI--GTLKMN- 392 (564)
Q Consensus 323 s~~~dg~i~iwdl~~~~~---~~~~~~~-~~~~~~v~~~~~spd--g~~la~~~-~dg~I~lwd~~t~~~~--~~~~~~- 392 (564)
.++.+|+|.-|...-+.. .....+. +........+++... +.+|+.+. ..+.|-++|-.=.... ..+...
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~ 184 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPA 184 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCC
Confidence 778889999998543322 1111111 111223445666543 56666554 4688999985322211 011100
Q ss_pred -------CcEEEE------EE---ecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCc-ceEEEEECC------CCCE
Q 043172 393 -------GTVRSL------AF---ADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCI-NGTALCTSP------DGTF 449 (564)
Q Consensus 393 -------~~V~~l------~~---spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~-~i~~l~~sp------~g~~ 449 (564)
-.|..+ .| .++.+.=+.+..-|.|-+||+. ++.++++...+.. ....|+..| .|.+
T Consensus 185 iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~l 263 (336)
T TIGR03118 185 LPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGAL 263 (336)
T ss_pred CCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCCe
Confidence 011111 11 1122222223334789999986 7778877654322 224555544 4566
Q ss_pred EEEEeCCCcEEEEeCCcccCCcceeeEEccccc------cceeEEEEcC
Q 043172 450 FAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLT------TKVDFMKFNN 492 (564)
Q Consensus 450 lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~------~~I~~l~fsp 492 (564)
|+---.||+|+.||..++ ..+..+.... ..++.|+|-.
T Consensus 264 LVGNFGDG~InaFD~~sG-----~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 264 LVGNFGDGTINAYDPQSG-----AQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred EEeecCCceeEEecCCCC-----ceeeeecCCCCCeEEecCeEEeeeCC
Confidence 766667999999998876 4444443221 2456666654
No 403
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.92 E-value=0.18 Score=47.19 Aligned_cols=208 Identities=12% Similarity=0.072 Sum_probs=113.5
Q ss_pred EEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCC---CEEEEEeCCCeEEEEECC--CCcEEEEee----
Q 043172 320 QAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDS---SVIAFVGNEGYILLVSSK--TKELIGTLK---- 390 (564)
Q Consensus 320 ~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg---~~la~~~~dg~I~lwd~~--t~~~~~~~~---- 390 (564)
.+.+--..+.|+-||+.+.+..+. .+.+. ++.++.+--.+ .+.+.++..-.|.-||.. ......++.
T Consensus 29 Ll~VDi~ag~v~r~D~~qn~v~ra-~ie~p---~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~ 104 (310)
T KOG4499|consen 29 LLYVDIEAGEVHRYDIEQNKVYRA-KIEGP---PSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQP 104 (310)
T ss_pred EEEEEeccCceehhhhhhhheEEE-EEecC---cceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCc
Confidence 333333456677788887665432 23222 23344443322 233344444445556632 233333322
Q ss_pred --ecCcEEEEEEecCCCEEEEEeC---------CCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCE-EEEEeCCCc
Q 043172 391 --MNGTVRSLAFADDGKQLLSSGG---------DGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTF-FAAGSDSGI 458 (564)
Q Consensus 391 --~~~~V~~l~~spdg~~l~s~s~---------dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~-lasgs~dg~ 458 (564)
...+.++-..+|+|++++-.-. .|.++.|-.. ..+..+...-.+ ...++|+.+.+. .++-+.+-.
T Consensus 105 d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~I-sNgl~Wd~d~K~fY~iDsln~~ 181 (310)
T KOG4499|consen 105 DRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGI-SNGLAWDSDAKKFYYIDSLNYE 181 (310)
T ss_pred hHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceeeehhccC-CccccccccCcEEEEEccCceE
Confidence 2456677788999998443222 2455555443 112222211111 256788877664 445566777
Q ss_pred EEEEe--CCcccCCcceeeEEcccc----ccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCc
Q 043172 459 VNVYN--RQEFLGGKRKPIKTIENL----TTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYP 532 (564)
Q Consensus 459 V~iwd--~~~~~~~~~~~~~~~~~~----~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V 532 (564)
|.-|| ..++...+++.+..+... .-..-.++....|.+.+++-. .++|..+|..+++.+..+... ...|
T Consensus 182 V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n--g~~V~~~dp~tGK~L~eiklP---t~qi 256 (310)
T KOG4499|consen 182 VDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN--GGTVQKVDPTTGKILLEIKLP---TPQI 256 (310)
T ss_pred EeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec--CcEEEEECCCCCcEEEEEEcC---CCce
Confidence 87777 555433445555555431 111233455567776666655 789999999999988766444 3679
Q ss_pred EEEEEeC
Q 043172 533 RCLDFSP 539 (564)
Q Consensus 533 ~~l~fsp 539 (564)
++++|--
T Consensus 257 tsccFgG 263 (310)
T KOG4499|consen 257 TSCCFGG 263 (310)
T ss_pred EEEEecC
Confidence 9999963
No 404
>PRK13684 Ycf48-like protein; Provisional
Probab=96.90 E-value=0.62 Score=47.48 Aligned_cols=152 Identities=13% Similarity=0.144 Sum_probs=86.5
Q ss_pred cceEEEEEcCCCCEEEEEeCCCeEEEE-ECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEE
Q 043172 352 KSLEFFEVSPDSSVIAFVGNEGYILLV-SSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHR 429 (564)
Q Consensus 352 ~~v~~~~~spdg~~la~~~~dg~I~lw-d~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~ 429 (564)
..+..+.+.|++.+++++ ..|.+..- +-....+..... ....++++.+.++++.++++ ..|.+++=....+..-..
T Consensus 173 g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~ 250 (334)
T PRK13684 173 GVVRNLRRSPDGKYVAVS-SRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSK 250 (334)
T ss_pred ceEEEEEECCCCeEEEEe-CCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcccc
Confidence 368889999988766555 45655542 222122333222 34678999999998876655 567665322333332221
Q ss_pred Eeec---CCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCC
Q 043172 430 AVDE---GCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKN 506 (564)
Q Consensus 430 ~~~~---~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~ 506 (564)
.... ....+..+.+.+++..+++| .+|.|. .....+ .....+..........+.+.|..++..+++|. .|
T Consensus 251 ~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G--~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~---~G 323 (334)
T PRK13684 251 PIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGG--KTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQ---RG 323 (334)
T ss_pred ccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCC--CCCeECCcCCCCCcceEEEEEeCCCceEEECC---Cc
Confidence 1111 22356788899888766555 566554 333333 22233322223345688888888888877766 46
Q ss_pred eEEEEE
Q 043172 507 SLKLIH 512 (564)
Q Consensus 507 ~I~lwd 512 (564)
.|--++
T Consensus 324 ~il~~~ 329 (334)
T PRK13684 324 VLLRYV 329 (334)
T ss_pred eEEEec
Confidence 665554
No 405
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.86 E-value=0.069 Score=56.29 Aligned_cols=150 Identities=11% Similarity=0.061 Sum_probs=91.2
Q ss_pred CcCeEEEEEeeCCCEEEEEe---CCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCC----CEEEEEeCCCeEEEE
Q 043172 306 DCPVRKASFLPDGSQAIIAG---RRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDS----SVIAFVGNEGYILLV 378 (564)
Q Consensus 306 ~~~I~~l~fspdg~~l~s~~---~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg----~~la~~~~dg~I~lw 378 (564)
-.||+.++|. ||+.++... .+|.+++=| . .+.|..+ .|..+.|.|-+ ..+++.-....|.||
T Consensus 19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd-----s----~viGqFE-hV~GlsW~P~~~~~~paLLAVQHkkhVtVW 87 (671)
T PF15390_consen 19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD-----S----KVIGQFE-HVHGLSWAPPCTADTPALLAVQHKKHVTVW 87 (671)
T ss_pred hccccceEec-CCCEEEEEeeeeeCCccccCC-----c----cEeeccc-eeeeeeecCcccCCCCceEEEeccceEEEE
Confidence 3588999997 787776553 222222211 1 1223333 58899999852 234444566889999
Q ss_pred ECC-----CCcEEEEee--ec--C--cEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCC
Q 043172 379 SSK-----TKELIGTLK--MN--G--TVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDG 447 (564)
Q Consensus 379 d~~-----t~~~~~~~~--~~--~--~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g 447 (564)
.+. +++++.... .. - -..++.|+|....|++-.....=.+++++......+........|.|.||.++|
T Consensus 88 qL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG 167 (671)
T PF15390_consen 88 QLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDG 167 (671)
T ss_pred EeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcC
Confidence 875 233332221 21 1 235678999988888776655555677765444333333445578999999999
Q ss_pred CEEEEEeC-CCcEEEEeCCc
Q 043172 448 TFFAAGSD-SGIVNVYNRQE 466 (564)
Q Consensus 448 ~~lasgs~-dg~V~iwd~~~ 466 (564)
+.|+++-. .=.-+|||-..
T Consensus 168 ~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 168 QRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred CEEEEEeCCeEEEEEecCch
Confidence 97766533 33567888553
No 406
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.84 E-value=0.62 Score=48.19 Aligned_cols=143 Identities=17% Similarity=0.176 Sum_probs=79.8
Q ss_pred CeEEEEEeeCCCEEEEEe-----------CCC-eEEEEECCC--CceeeeccccccCCcceEEEEEcCCCCEEEEEeCCC
Q 043172 308 PVRKASFLPDGSQAIIAG-----------RRK-FFYSLDLVK--AKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEG 373 (564)
Q Consensus 308 ~I~~l~fspdg~~l~s~~-----------~dg-~i~iwdl~~--~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg 373 (564)
....|+|.++|+.+++.. ..+ .|.+++-.. |+..+...+.... .....+++.++| + +++.. .
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l-~~p~Gi~~~~~G-l-yV~~~-~ 90 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEEL-SMVTGLAVAVGG-V-YVATP-P 90 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCC-CCccceeEecCC-E-EEeCC-C
Confidence 346789999998776642 122 677776543 3332222222222 235778999988 4 44444 3
Q ss_pred eEEEE-ECCC-----CcE--E-EEeee-----cCcEEEEEEecCCCEEEEEeCC-------------------CeEEEEE
Q 043172 374 YILLV-SSKT-----KEL--I-GTLKM-----NGTVRSLAFADDGKQLLSSGGD-------------------GQVYHWD 420 (564)
Q Consensus 374 ~I~lw-d~~t-----~~~--~-~~~~~-----~~~V~~l~~spdg~~l~s~s~d-------------------g~V~lwD 420 (564)
.|..| +... ++. + ..+.. ...+..++|.|+|.+.++.+.. |.|..++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 45544 4421 111 1 11221 2347789999999876655521 4566666
Q ss_pred CCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCC
Q 043172 421 LRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDS 456 (564)
Q Consensus 421 ~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~d 456 (564)
..++.. ..+. .+......++|+++|+++++-..+
T Consensus 171 pdg~~~-e~~a-~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 171 PDGGKL-RVVA-HGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred cCCCeE-EEEe-cCcCCCccceECCCCCEEEEccCC
Confidence 665443 2232 333345789999999887764433
No 407
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.84 E-value=0.12 Score=42.80 Aligned_cols=100 Identities=23% Similarity=0.355 Sum_probs=65.8
Q ss_pred EEEEEEec---CC-CEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCC
Q 043172 395 VRSLAFAD---DG-KQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGG 470 (564)
Q Consensus 395 V~~l~~sp---dg-~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~ 470 (564)
|+++++.. +| +.|++|+.|..|++|+-. ..+..+.... .+++++-... ..|+.+..+|+|-+|+...
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~--~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~---- 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETD--KVTSLCSLGG-GRFAYALANGTVGVYDRSQ---- 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEeccc--ceEEEEEcCC-CEEEEEecCCEEEEEeCcc----
Confidence 66777765 22 689999999999999854 5666665444 4677776655 5789999999999998753
Q ss_pred cceeeEEccccccceeEEEEcC-C--C-cEEEEEecCCCCeEE
Q 043172 471 KRKPIKTIENLTTKVDFMKFNN-D--A-QILAICSTMKKNSLK 509 (564)
Q Consensus 471 ~~~~~~~~~~~~~~I~~l~fsp-d--g-~~La~~s~~~d~~I~ 509 (564)
.+..++.... ++++.+.. + | .-|++|-. +|.|-
T Consensus 73 ---RlWRiKSK~~-~~~~~~~D~~gdG~~eLI~Gws--nGkve 109 (111)
T PF14783_consen 73 ---RLWRIKSKNQ-VTSMAFYDINGDGVPELIVGWS--NGKVE 109 (111)
T ss_pred ---eeeeeccCCC-eEEEEEEcCCCCCceEEEEEec--CCeEE
Confidence 3444443333 55555443 2 3 24555544 66664
No 408
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.83 E-value=0.45 Score=49.49 Aligned_cols=78 Identities=15% Similarity=0.233 Sum_probs=50.4
Q ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccc----eeEEEEcC--------------CCcEEE
Q 043172 437 NGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTK----VDFMKFNN--------------DAQILA 498 (564)
Q Consensus 437 ~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~----I~~l~fsp--------------dg~~La 498 (564)
.+.+|+.+|.+++.|+...=|.|.++|+... ..++.+++.... +....-.. ...+|+
T Consensus 309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~-----~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~Lv 383 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVTDSLGRVLLIDVARG-----IVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLV 383 (415)
T ss_pred eEEEEEECCCCCEEEEEcCCCcEEEEECCCC-----hhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEE
Confidence 4678999999999999888899999999987 555555543321 11111000 123344
Q ss_pred EEecCCCCeEEEEEcCCCceec
Q 043172 499 ICSTMKKNSLKLIHIPSYNVFS 520 (564)
Q Consensus 499 ~~s~~~d~~I~lwdl~s~~~~~ 520 (564)
+-.. ..|.|.||.++.+..+.
T Consensus 384 Iyap-rRg~lEvW~~~~g~Rv~ 404 (415)
T PF14655_consen 384 IYAP-RRGILEVWSMRQGPRVA 404 (415)
T ss_pred EEec-cCCeEEEEecCCCCEEE
Confidence 3332 27999999998876544
No 409
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.79 E-value=0.11 Score=50.61 Aligned_cols=152 Identities=16% Similarity=0.163 Sum_probs=90.7
Q ss_pred cEEEEEEecCCCEEEEEe---CCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEe-CCcccC
Q 043172 394 TVRSLAFADDGKQLLSSG---GDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYN-RQEFLG 469 (564)
Q Consensus 394 ~V~~l~~spdg~~l~s~s---~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd-~~~~~~ 469 (564)
.+.+.++++++..++... ....++++... ......... ..++...|++++...++...+....++. ...+
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g-- 98 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASG-- 98 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--CcceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCC--
Confidence 688999999999887766 33456666543 333332222 2567889999987666666666666663 2221
Q ss_pred CcceeeEEccc-cccceeEEEEcCCCcEEEEEecC-CCCeEEEEEcC---CC--cee-ccCCCCCCCCCCcEEEEEeCCC
Q 043172 470 GKRKPIKTIEN-LTTKVDFMKFNNDAQILAICSTM-KKNSLKLIHIP---SY--NVF-SNWPPANRNLQYPRCLDFSPGG 541 (564)
Q Consensus 470 ~~~~~~~~~~~-~~~~I~~l~fspdg~~La~~s~~-~d~~I~lwdl~---s~--~~~-~~~~~~~~~~~~V~~l~fspdg 541 (564)
...++..-.. ....|+.+.+||||..+|+.... .++.|.+--+. .+ ..+ ............+++++|.+++
T Consensus 99 -~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~ 177 (253)
T PF10647_consen 99 -TGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS 177 (253)
T ss_pred -cceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC
Confidence 1122222111 12289999999999998877631 24667766543 22 011 1111111224678999999999
Q ss_pred CEEEEEcCCCe
Q 043172 542 GFMAVGNAAGK 552 (564)
Q Consensus 542 ~~Lasgs~dG~ 552 (564)
.+++.+...+.
T Consensus 178 ~L~V~~~~~~~ 188 (253)
T PF10647_consen 178 TLVVLGRSAGG 188 (253)
T ss_pred EEEEEeCCCCC
Confidence 98877765443
No 410
>PRK10115 protease 2; Provisional
Probab=96.78 E-value=0.44 Score=53.58 Aligned_cols=199 Identities=11% Similarity=0.038 Sum_probs=104.6
Q ss_pred ceEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEEeCC------CeEEEEEC
Q 043172 353 SLEFFEVSPDSSVIAFVGNE-----GYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSGGD------GQVYHWDL 421 (564)
Q Consensus 353 ~v~~~~~spdg~~la~~~~d-----g~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s~d------g~V~lwD~ 421 (564)
.+..+.+||+|++|+.+... ..|++.|+.++..+...- .+.-..++|++|++.|+.+..+ ..|+.+++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i-~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~l 206 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL-DNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTI 206 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc-cCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEEC
Confidence 46778899999998886442 468999998886432221 1112569999999877665432 47889999
Q ss_pred CCC--ceeEEEeecCCcceEEEEECCCCCEEEEEeC---CCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcE
Q 043172 422 RTR--TCIHRAVDEGCINGTALCTSPDGTFFAAGSD---SGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQI 496 (564)
Q Consensus 422 ~~~--~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~---dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~ 496 (564)
.++ .-...+..........+..+.++++++..+. ++.+.+|+..... ..+.++. .........+. +.. ..
T Consensus 207 gt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~-~~~~~~~--~~~~~~~~~~~-~~~-~~ 281 (686)
T PRK10115 207 GTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELAD-AEPFVFL--PRRKDHEYSLD-HYQ-HR 281 (686)
T ss_pred CCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCC-CCceEEE--ECCCCCEEEEE-eCC-CE
Confidence 887 3233333222211223444558887766543 3578888854321 1112221 11112222222 223 34
Q ss_pred EEEEecCCCCeEEEEEcCCCceeccCCCCCCC--CCCcEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q 043172 497 LAICSTMKKNSLKLIHIPSYNVFSNWPPANRN--LQYPRCLDFSPGGGFMAVGNAAGKVFLYKLN 559 (564)
Q Consensus 497 La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~--~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~ 559 (564)
|.+.+.......+|+.+.-.. ...|.....+ ...|..+.++ ...++++...+|.-+++-+.
T Consensus 282 ly~~tn~~~~~~~l~~~~~~~-~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 282 FYLRSNRHGKNFGLYRTRVRD-EQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQIN 344 (686)
T ss_pred EEEEEcCCCCCceEEEecCCC-cccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEc
Confidence 444443212334444433211 1122222222 2357778887 33556666777776666543
No 411
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=96.77 E-value=0.94 Score=47.75 Aligned_cols=111 Identities=11% Similarity=0.099 Sum_probs=62.5
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEE-----eCCcCeEEEEEeeCC------CEEEEEe------
Q 043172 263 GPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIF-----LEDCPVRKASFLPDG------SQAIIAG------ 325 (564)
Q Consensus 263 ~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~-----~~~~~I~~l~fspdg------~~l~s~~------ 325 (564)
..-+.|+|.|+|.+|++--..|.|++++-.+.....+..+. ........|+|+|+- .+|+++.
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~ 109 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGD 109 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCC
Confidence 45789999999988877655699998875433222222111 134668899999873 3455442
Q ss_pred ----CCCeEEEEECCCC--ce----eeeccccccCCcceEEEEEcCCCCEEEEEeCCC
Q 043172 326 ----RRKFFYSLDLVKA--KA----DKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEG 373 (564)
Q Consensus 326 ----~dg~i~iwdl~~~--~~----~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg 373 (564)
....|.-|.+... .. ..+..+.....+.-..|.|.|+|.++++.+..+
T Consensus 110 ~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~g 167 (454)
T TIGR03606 110 KELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQG 167 (454)
T ss_pred CCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCCC
Confidence 1234555555421 11 111112111112245688999998777666543
No 412
>PHA03098 kelch-like protein; Provisional
Probab=96.77 E-value=0.19 Score=54.88 Aligned_cols=192 Identities=13% Similarity=0.068 Sum_probs=100.2
Q ss_pred eCCCEEEEEeCC------CeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCc
Q 043172 316 PDGSQAIIAGRR------KFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNE-----GYILLVSSKTKE 384 (564)
Q Consensus 316 pdg~~l~s~~~d------g~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-----g~I~lwd~~t~~ 384 (564)
.++..++.||.+ ..+..||..+.+...+..+..... ....+ .-++.+++.||.+ ..+..||..+.+
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~-~~~~~--~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRK-NPGVT--VFNNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccc-cceEE--EECCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 355566666643 257889998888766554432221 12222 2357777888765 357889998887
Q ss_pred EEEEeeecCc--EEEEEEecCCCEEEEEeCC------CeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCC
Q 043172 385 LIGTLKMNGT--VRSLAFADDGKQLLSSGGD------GQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDS 456 (564)
Q Consensus 385 ~~~~~~~~~~--V~~l~~spdg~~l~s~s~d------g~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~d 456 (564)
+...-....+ -.+++ .-+++.++.||.. ..+..||+.+.+-...-.........+++ ..++..++.|+.+
T Consensus 370 W~~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~ 447 (534)
T PHA03098 370 WREEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAI-YHDGKIYVIGGIS 447 (534)
T ss_pred eeeCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEE-EECCEEEEECCcc
Confidence 7653322111 11222 2356666777632 46889998876543211111111111222 2356666777643
Q ss_pred --------CcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCC---CCeEEEEEcCCCc
Q 043172 457 --------GIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMK---KNSLKLIHIPSYN 517 (564)
Q Consensus 457 --------g~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~---d~~I~lwdl~s~~ 517 (564)
..+.+||..+. .+..+..+.........+.+ ++.++++|+... .+.|.+||..+.+
T Consensus 448 ~~~~~~~~~~v~~yd~~~~---~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 448 YIDNIKVYNIVESYNPVTN---KWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred CCCCCcccceEEEecCCCC---ceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 23888998763 22222222211111122222 677777776521 2468888877653
No 413
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.77 E-value=0.46 Score=53.63 Aligned_cols=114 Identities=15% Similarity=0.132 Sum_probs=72.6
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeeeccccccCC-----cceEEEEEc----------------CCCCEEEEEeCCCeEE
Q 043172 318 GSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREE-----KSLEFFEVS----------------PDSSVIAFVGNEGYIL 376 (564)
Q Consensus 318 g~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~-----~~v~~~~~s----------------pdg~~la~~~~dg~I~ 376 (564)
+..|++++.++.|+-.|..+|+..-......... ..+..+.+. .++..|++++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 5577777878888888888887643322211110 011222221 1345788888999999
Q ss_pred EEECCCCcEEEEeeecCcEE-------------EEEEec--CCCEEEEEeC----------CCeEEEEECCCCceeEEEe
Q 043172 377 LVSSKTKELIGTLKMNGTVR-------------SLAFAD--DGKQLLSSGG----------DGQVYHWDLRTRTCIHRAV 431 (564)
Q Consensus 377 lwd~~t~~~~~~~~~~~~V~-------------~l~~sp--dg~~l~s~s~----------dg~V~lwD~~~~~~~~~~~ 431 (564)
-+|..+|+.+..+..++.|. .+.-.| .+..+++|+. .|.|+-+|+++++.+-.+.
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence 99999999998775444331 111122 2345666643 6889999999999887765
No 414
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.68 E-value=0.0052 Score=39.01 Aligned_cols=37 Identities=51% Similarity=0.816 Sum_probs=31.1
Q ss_pred cEEEEee-ecCcEEEEEEecCCCEEEEEeCCCeEEEEE
Q 043172 384 ELIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQVYHWD 420 (564)
Q Consensus 384 ~~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~V~lwD 420 (564)
+++..+. |...|.++.|++.+..+++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 3444455 677899999999999999999999999996
No 415
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.59 E-value=0.0067 Score=38.47 Aligned_cols=37 Identities=22% Similarity=0.249 Sum_probs=32.1
Q ss_pred eeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEE
Q 043172 298 KIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLD 334 (564)
Q Consensus 298 ~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwd 334 (564)
.+..+..|...|.++.|++.+..+++++.++.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4455667888999999999999999999999999996
No 416
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.53 E-value=0.86 Score=44.24 Aligned_cols=195 Identities=10% Similarity=0.052 Sum_probs=109.3
Q ss_pred CcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-
Q 043172 306 DCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKE- 384 (564)
Q Consensus 306 ~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~- 384 (564)
..-+..+.++ +++++.+..+.-++|.|+.+............. ....++ .-.|++..++..+.-+.++|+.+.+
T Consensus 86 ~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~-gyaygv--~vsGn~aYVadlddgfLivdvsdpss 160 (370)
T COG5276 86 RDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTD-GYAYGV--YVSGNYAYVADLDDGFLIVDVSDPSS 160 (370)
T ss_pred hhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCC-ceEEEE--EecCCEEEEeeccCcEEEEECCCCCC
Confidence 3455666675 568888877778999999886543222222211 123333 4458888888866667788886543
Q ss_pred --EEEEee-ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEee-cCCcceEEEEECCCCCEEEEEeCCCcEE
Q 043172 385 --LIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVD-EGCINGTALCTSPDGTFFAAGSDSGIVN 460 (564)
Q Consensus 385 --~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~-~~~~~i~~l~~sp~g~~lasgs~dg~V~ 460 (564)
....+. ..+....++.+ |++-+.+..|+-+.+.|+........+.. ..+..+.++..+++..+++.... -+.
T Consensus 161 P~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~e--gvl 236 (370)
T COG5276 161 PQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDE--GVL 236 (370)
T ss_pred ceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEccc--ceE
Confidence 333333 23344667776 77788888899999999987543322221 11224677777777666665543 366
Q ss_pred EEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcC
Q 043172 461 VYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIP 514 (564)
Q Consensus 461 iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~ 514 (564)
+-|.... ..+..+.+.. ..+++..-.|.-.+++...+-. +..+.+.++.
T Consensus 237 ivd~s~~--ssp~~~gsye-t~~p~~~s~v~Vs~~~~Yvadg--a~gl~~idis 285 (370)
T COG5276 237 IVDVSGP--SSPTVFGSYE-TSNPVSISTVPVSGEYAYVADG--AKGLPIIDIS 285 (370)
T ss_pred EEecCCC--CCceEeeccc-cCCcccccceecccceeeeecc--ccCceeEecc
Confidence 6676654 2222222222 1222221123334556665555 3445555553
No 417
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.48 E-value=0.032 Score=62.57 Aligned_cols=187 Identities=13% Similarity=0.152 Sum_probs=110.0
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEEec--------CC-CCce-----eEEEEe-CCcCeEEEEEeeCCCEEEEEe--CCC
Q 043172 266 NSVQFHRNAQLLLVAGLDRRLRFFQID--------GK-RNTK-----IQSIFL-EDCPVRKASFLPDGSQAIIAG--RRK 328 (564)
Q Consensus 266 ~~l~fspdg~~l~s~s~dg~I~lwd~~--------~~-~~~~-----~~~~~~-~~~~I~~l~fspdg~~l~s~~--~dg 328 (564)
+.++.++...++++++..+.+.++... .. .+.. ...+.. ...+|..+...+|+...++.. .+-
T Consensus 45 n~la~sn~ysl~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~ 124 (1405)
T KOG3630|consen 45 NNLAISNSYSLFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVDADENLTFKVEKEIPIVIFVCFHDATDSVVVSTSNGE 124 (1405)
T ss_pred hhhhcccccceEEEecCCcceeeeccccceeecccccccccccccccccceeeeccccceEEEeccCCceEEEEEecCCc
Confidence 445555655566666666655555321 10 1101 112222 234666666677776655543 334
Q ss_pred eEEEEECCCCceee---ecccccc-----CCcceEEEEEcCCCC-EEEEEeCCCeEEEEECCCC-cEEEEeeecCcEEEE
Q 043172 329 FFYSLDLVKAKADK---IGPLVGR-----EEKSLEFFEVSPDSS-VIAFVGNEGYILLVSSKTK-ELIGTLKMNGTVRSL 398 (564)
Q Consensus 329 ~i~iwdl~~~~~~~---~~~~~~~-----~~~~v~~~~~spdg~-~la~~~~dg~I~lwd~~t~-~~~~~~~~~~~V~~l 398 (564)
.|+.||+.+-.... ...+..+ ...-..++.|+|.-. ..+.+..|+.|.+..+... +.+..+.....++++
T Consensus 125 ~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav 204 (1405)
T KOG3630|consen 125 AVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAV 204 (1405)
T ss_pred eEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeE
Confidence 88999987643211 1111111 112345778888532 3455667888888876532 333445566789999
Q ss_pred EEecCCCEEEEEeCCCeEEEEECCCCceeEEEee---cCCcceEEEEECCCCCEEEEE
Q 043172 399 AFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVD---EGCINGTALCTSPDGTFFAAG 453 (564)
Q Consensus 399 ~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~---~~~~~i~~l~~sp~g~~lasg 453 (564)
+|+|.|+.+++|-..|++.-|-.. ......+.. ...+.|.+|+|-....|+++-
T Consensus 205 ~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 205 LWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred EeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEEEe
Confidence 999999999999999999988765 333233322 234678999998777776653
No 418
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=96.46 E-value=1.3 Score=50.12 Aligned_cols=71 Identities=14% Similarity=0.231 Sum_probs=46.7
Q ss_pred CCCeeEEEEcCCC------CEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEee---CCC------EEEEEeC
Q 043172 262 TGPINSVQFHRNA------QLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLP---DGS------QAIIAGR 326 (564)
Q Consensus 262 ~~~V~~l~fspdg------~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fsp---dg~------~l~s~~~ 326 (564)
+.-|.|+++.+++ ++++.|+.|++++++.++........+.++-..++.++.+-+ ++. +|.+|-+
T Consensus 582 ~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~ 661 (1205)
T KOG1898|consen 582 STDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSVQGLSSPPESLCIVEMEATGGTDVAQLYLLIGLR 661 (1205)
T ss_pred ceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEccccccCCCccceEEEEecccCCccceeEEEEeccc
Confidence 5678999998865 579999999999999998544333334444555666666543 231 4445556
Q ss_pred CCeEEE
Q 043172 327 RKFFYS 332 (564)
Q Consensus 327 dg~i~i 332 (564)
+|.+.-
T Consensus 662 NGvllR 667 (1205)
T KOG1898|consen 662 NGVLLR 667 (1205)
T ss_pred ccEEEE
Confidence 665543
No 419
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.45 E-value=0.0045 Score=57.39 Aligned_cols=141 Identities=10% Similarity=0.066 Sum_probs=84.4
Q ss_pred EEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee---ecCcEEEE
Q 043172 322 IIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK---MNGTVRSL 398 (564)
Q Consensus 322 ~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~---~~~~V~~l 398 (564)
...+.+++|.-+++...+... ..-..+.. .+.+..-+..+++|+.+|.|++|...-.-.+.... .+.....|
T Consensus 34 ~~~sa~~~v~~~~~~k~k~s~-rse~~~~e----~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~I 108 (238)
T KOG2444|consen 34 RATSADGLVRERKVRKHKESC-RSERFIDE----GQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGI 108 (238)
T ss_pred ccccCCcccccchhhhhhhhh-hhhhhhhc----ceeecccCceEEeecccceEEEecCCccchHHHhhhcccccceecc
Confidence 344567777766665433211 11111111 12222345678899999999999876211111111 12222333
Q ss_pred EEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEE--eCCCcEEEEeCCcc
Q 043172 399 AFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAG--SDSGIVNVYNRQEF 467 (564)
Q Consensus 399 ~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasg--s~dg~V~iwd~~~~ 467 (564)
.-..++.+.+++..+|.|+.|++.-.+.+.....+....+..+..+..++++++. |.+..++.|++...
T Consensus 109 p~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 109 PNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred ccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 3344567888999999999999998877765554443455556666667777777 77888888887654
No 420
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.30 E-value=0.45 Score=51.70 Aligned_cols=218 Identities=11% Similarity=0.110 Sum_probs=109.5
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCcee
Q 043172 262 TGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKAD 341 (564)
Q Consensus 262 ~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~ 341 (564)
-+.+-+|..+|....=+. +.--.|+||++.|. .+..+.-..+.+..+.|+.+ ..|++...+|+++||++......
T Consensus 43 ~gGpIAV~r~p~~~~~~~-~a~~~I~If~~sG~---lL~~~~w~~~~lI~mgWs~~-eeLI~v~k~g~v~Vy~~~ge~ie 117 (829)
T KOG2280|consen 43 FGGPIAVTRSPSKLVPLY-SARPYIRIFNISGQ---LLGRILWKHGELIGMGWSDD-EELICVQKDGTVHVYGLLGEFIE 117 (829)
T ss_pred cCCceEEEeccccccccc-ccceeEEEEecccc---chHHHHhcCCCeeeecccCC-ceEEEEeccceEEEeecchhhhc
Confidence 344556666663211111 33456889988654 44444334447889999865 46667788999999998755432
Q ss_pred eecc-ccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee--ecCcEEEEEE--ecCCC---EEEEEe-C
Q 043172 342 KIGP-LVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK--MNGTVRSLAF--ADDGK---QLLSSG-G 412 (564)
Q Consensus 342 ~~~~-~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~--~~~~V~~l~~--spdg~---~l~s~s-~ 412 (564)
.... ..... ..|..+.+..+|-.+. ..+|.+.+.+-........++ ......+.+| .++++ .++-.. .
T Consensus 118 ~~svg~e~~~-~~I~ec~~f~~GVavl--t~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~ 194 (829)
T KOG2280|consen 118 SNSVGFESQM-SDIVECRFFHNGVAVL--TVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVA 194 (829)
T ss_pred cccccccccc-CceeEEEEecCceEEE--ecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechh
Confidence 2100 11111 2344444444553333 334555554433322333333 1111122333 22221 121111 0
Q ss_pred CCeEEEEECCCCc-eeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEcc-ccccceeEEEE
Q 043172 413 DGQVYHWDLRTRT-CIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIE-NLTTKVDFMKF 490 (564)
Q Consensus 413 dg~V~lwD~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~-~~~~~I~~l~f 490 (564)
.+ ..++-..... ..+.+...+ ..+..+.+||+.++|+.-...|.|.+-++... +.+..+. +...+.-.++|
T Consensus 195 v~-~~~~q~~~~~~q~~~~~~~~-~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~-----~~lce~~~~~~~~p~qm~W 267 (829)
T KOG2280|consen 195 VG-LHICQVEESRVQLHALSWPN-SSVVKISVSPNRRFLALYTETGKIWVVSIDLS-----QILCEFNCTDHDPPKQMAW 267 (829)
T ss_pred hh-hcccceecccccccccCCCC-ceEEEEEEcCCcceEEEEecCCcEEEEecchh-----hhhhccCCCCCCchHhcee
Confidence 11 1112222211 122222222 35678999999999999999999999888764 4444443 11222235666
Q ss_pred cCCC
Q 043172 491 NNDA 494 (564)
Q Consensus 491 spdg 494 (564)
..+.
T Consensus 268 cgnd 271 (829)
T KOG2280|consen 268 CGND 271 (829)
T ss_pred ecCC
Confidence 5544
No 421
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.29 E-value=0.07 Score=55.37 Aligned_cols=143 Identities=17% Similarity=0.302 Sum_probs=89.1
Q ss_pred CCCEEEE-EeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCC-------EEEEEeCCCeEEEEECCCCceeeec
Q 043172 273 NAQLLLV-AGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGS-------QAIIAGRRKFFYSLDLVKAKADKIG 344 (564)
Q Consensus 273 dg~~l~s-~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~-------~l~s~~~dg~i~iwdl~~~~~~~~~ 344 (564)
+.++|+. ++....| |.++-..+..+.....+.. |.-+.+.|+.+ .-+.|-.+..|+-||++-.....+.
T Consensus 344 dsnlil~~~~~~~~l--~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~ 420 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKL--YKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLA 420 (644)
T ss_pred ccceEeeCCCCcCcc--eeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceee
Confidence 4444444 3333344 4444446678888887766 66777777542 2234556788999998743321221
Q ss_pred cccccC---CcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE-ee-ecCcEEEEEEecCCCEEEEEeCCCeEEEE
Q 043172 345 PLVGRE---EKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGT-LK-MNGTVRSLAFADDGKQLLSSGGDGQVYHW 419 (564)
Q Consensus 345 ~~~~~~---~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~-~~-~~~~V~~l~~spdg~~l~s~s~dg~V~lw 419 (564)
-..++. .....|++-..+| +|++|+.+|.|++||- .+....+ +. ...+|..+..+.+|++|++.+ +..+.+.
T Consensus 421 ~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi 497 (644)
T KOG2395|consen 421 VVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLI 497 (644)
T ss_pred eeeccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEE
Confidence 122221 1245666655555 8899999999999996 4443333 33 567899999999999887665 4566666
Q ss_pred EC
Q 043172 420 DL 421 (564)
Q Consensus 420 D~ 421 (564)
++
T Consensus 498 ~t 499 (644)
T KOG2395|consen 498 DT 499 (644)
T ss_pred EE
Confidence 65
No 422
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.27 E-value=0.013 Score=40.55 Aligned_cols=30 Identities=30% Similarity=0.742 Sum_probs=28.2
Q ss_pred CCcEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q 043172 530 QYPRCLDFSPGGGFMAVGNAAGKVFLYKLN 559 (564)
Q Consensus 530 ~~V~~l~fspdg~~Lasgs~dG~V~lw~l~ 559 (564)
..|.+++|+|...+||.|+.+|.|.||+++
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 569999999999999999999999999994
No 423
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.24 E-value=1.9 Score=45.04 Aligned_cols=146 Identities=8% Similarity=0.080 Sum_probs=88.4
Q ss_pred CCEEEEEeCCCcEEEEEecCCCCc---eeEEEEeCCcCeEEEEEe---e--CCCEEEEEeCCCeEEEEECCC-------C
Q 043172 274 AQLLLVAGLDRRLRFFQIDGKRNT---KIQSIFLEDCPVRKASFL---P--DGSQAIIAGRRKFFYSLDLVK-------A 338 (564)
Q Consensus 274 g~~l~s~s~dg~I~lwd~~~~~~~---~~~~~~~~~~~I~~l~fs---p--dg~~l~s~~~dg~i~iwdl~~-------~ 338 (564)
...+++||..|.++||+....... .+...+ -..||..+..- + ....||+ -.-+.+.||.+.. +
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~-l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ-LKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEe-cCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence 458999999999999988543322 222222 34688777653 2 2234444 4455677777622 1
Q ss_pred ceeeeccccccCC-cceEEEEEcC----C-CCEEEEEeCCCeEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEEeC
Q 043172 339 KADKIGPLVGREE-KSLEFFEVSP----D-SSVIAFVGNEGYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSGG 412 (564)
Q Consensus 339 ~~~~~~~~~~~~~-~~v~~~~~sp----d-g~~la~~~~dg~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s~ 412 (564)
....+..+..|.- .....+++-| . ..+|++-+-||.+.+++-+.......+..---...++|.+.-..|++++.
T Consensus 115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASS 194 (418)
T ss_pred cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecC
Confidence 1222222333321 2233444433 2 35788889999999999776555444443223345678887778888888
Q ss_pred CCeEEEEEC
Q 043172 413 DGQVYHWDL 421 (564)
Q Consensus 413 dg~V~lwD~ 421 (564)
+..|..|..
T Consensus 195 s~~l~~Yky 203 (418)
T PF14727_consen 195 SWTLECYKY 203 (418)
T ss_pred ceeEEEecH
Confidence 888888765
No 424
>PLN02193 nitrile-specifier protein
Probab=96.16 E-value=1.1 Score=47.95 Aligned_cols=148 Identities=14% Similarity=0.091 Sum_probs=78.9
Q ss_pred CCCEEEEEeCC-----CeEEEEECCCCceeeeccccc-cCCcceEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCcE
Q 043172 317 DGSQAIIAGRR-----KFFYSLDLVKAKADKIGPLVG-REEKSLEFFEVSPDSSVIAFVGNE-----GYILLVSSKTKEL 385 (564)
Q Consensus 317 dg~~l~s~~~d-----g~i~iwdl~~~~~~~~~~~~~-~~~~~v~~~~~spdg~~la~~~~d-----g~I~lwd~~t~~~ 385 (564)
++...+.|+.+ ..+++||+.+.+...+..+.. .....-.+++ .-+++++++|+.+ ..+..||+.+.++
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~-~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W 306 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMA-ADEENVYVFGGVSATARLKTLDSYNIVDKKW 306 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEE-EECCEEEEECCCCCCCCcceEEEEECCCCEE
Confidence 45555666643 468899999887766544311 1111112222 2356677777754 3577889888877
Q ss_pred EEEeee----cCc-EEEEEEecCCCEEEEEeCC----CeEEEEECCCCceeEEEee---cCCcceEEEEECCCCCEEEEE
Q 043172 386 IGTLKM----NGT-VRSLAFADDGKQLLSSGGD----GQVYHWDLRTRTCIHRAVD---EGCINGTALCTSPDGTFFAAG 453 (564)
Q Consensus 386 ~~~~~~----~~~-V~~l~~spdg~~l~s~s~d----g~V~lwD~~~~~~~~~~~~---~~~~~i~~l~~sp~g~~lasg 453 (564)
...-.. ... -..++. -+++.++.++.+ ..|.+||+.+.+....-.. .......+++ .-++++++.|
T Consensus 307 ~~~~~~~~~~~~R~~~~~~~-~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~-~~~~~iyv~G 384 (470)
T PLN02193 307 FHCSTPGDSFSIRGGAGLEV-VQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASA-AVGKHIVIFG 384 (470)
T ss_pred EeCCCCCCCCCCCCCcEEEE-ECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEE-EECCEEEEEC
Confidence 543211 001 111222 256777777655 4689999987765332111 1111111222 2356677777
Q ss_pred eCC--------------CcEEEEeCCcc
Q 043172 454 SDS--------------GIVNVYNRQEF 467 (564)
Q Consensus 454 s~d--------------g~V~iwd~~~~ 467 (564)
+.. ..+.+||+.+.
T Consensus 385 G~~~~~~~~~~~~~~~~ndv~~~D~~t~ 412 (470)
T PLN02193 385 GEIAMDPLAHVGPGQLTDGTFALDTETL 412 (470)
T ss_pred CccCCccccccCccceeccEEEEEcCcC
Confidence 743 24788888763
No 425
>PLN02153 epithiospecifier protein
Probab=96.13 E-value=1.2 Score=45.53 Aligned_cols=147 Identities=16% Similarity=0.110 Sum_probs=75.6
Q ss_pred CCCEEEEEeCC-----CeEEEEECCCCceeeeccccc---cCCcceEEEEEcCCCCEEEEEeCC-----------CeEEE
Q 043172 317 DGSQAIIAGRR-----KFFYSLDLVKAKADKIGPLVG---REEKSLEFFEVSPDSSVIAFVGNE-----------GYILL 377 (564)
Q Consensus 317 dg~~l~s~~~d-----g~i~iwdl~~~~~~~~~~~~~---~~~~~v~~~~~spdg~~la~~~~d-----------g~I~l 377 (564)
++..++.||.+ ..+.+||+.+.+...+..+.. .....-.+++ .-+++++++|+.+ ..|.+
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~v~~ 163 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMA-SDENHVYVFGGVSKGGLMKTPERFRTIEA 163 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEE-EECCEEEEECCccCCCccCCCcccceEEE
Confidence 45566666642 358889998887665443311 1111112222 3356677777753 25788
Q ss_pred EECCCCcEEEEeeec----Cc-EEEEEEecCCCEEEEEeCC-------------CeEEEEECCCCceeEEEee---cCCc
Q 043172 378 VSSKTKELIGTLKMN----GT-VRSLAFADDGKQLLSSGGD-------------GQVYHWDLRTRTCIHRAVD---EGCI 436 (564)
Q Consensus 378 wd~~t~~~~~~~~~~----~~-V~~l~~spdg~~l~s~s~d-------------g~V~lwD~~~~~~~~~~~~---~~~~ 436 (564)
||..+.++...-... .. -.+++. -++++++.++.+ ..|.+||+.+.+-...-.. ....
T Consensus 164 yd~~~~~W~~l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r 242 (341)
T PLN02153 164 YNIADGKWVQLPDPGENFEKRGGAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSAR 242 (341)
T ss_pred EECCCCeEeeCCCCCCCCCCCCcceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCc
Confidence 999888776432111 11 112222 256665655432 4588899887654332110 1111
Q ss_pred ceEEEEECCCCCEEEEEeCC--------------CcEEEEeCCc
Q 043172 437 NGTALCTSPDGTFFAAGSDS--------------GIVNVYNRQE 466 (564)
Q Consensus 437 ~i~~l~~sp~g~~lasgs~d--------------g~V~iwd~~~ 466 (564)
...+++ ..++++++.|+.. ..|..||..+
T Consensus 243 ~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~ 285 (341)
T PLN02153 243 SVFAHA-VVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTET 285 (341)
T ss_pred ceeeeE-EECCEEEEECcccCCccccccccccccccEEEEEcCc
Confidence 111222 2356777777742 2577888765
No 426
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.13 E-value=0.015 Score=53.96 Aligned_cols=138 Identities=14% Similarity=0.164 Sum_probs=78.9
Q ss_pred EEeCCCeEEEEECCCCcEEEEee--ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcce-EEEEEC
Q 043172 368 FVGNEGYILLVSSKTKELIGTLK--MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCING-TALCTS 444 (564)
Q Consensus 368 ~~~~dg~I~lwd~~t~~~~~~~~--~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i-~~l~~s 444 (564)
..+.+|.|.-++++..+....-. +...-..+ .-+..+++|+.+|.|++|..................| +.|...
T Consensus 35 ~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~---~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~ 111 (238)
T KOG2444|consen 35 ATSADGLVRERKVRKHKESCRSERFIDEGQRVV---TASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNG 111 (238)
T ss_pred cccCCcccccchhhhhhhhhhhhhhhhcceeec---ccCceEEeecccceEEEecCCccchHHHhhhcccccceeccccc
Confidence 34556777766665433211111 11111111 1346799999999999999873221111111111111 222222
Q ss_pred CCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccc-cceeEEEEcCCCcEEEEE--ecCCCCeEEEEEcCC
Q 043172 445 PDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLT-TKVDFMKFNNDAQILAIC--STMKKNSLKLIHIPS 515 (564)
Q Consensus 445 p~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~-~~I~~l~fspdg~~La~~--s~~~d~~I~lwdl~s 515 (564)
.++.+..+++.+|.|+.|++... +.+.....|. .++..+..+..+++|+++ |. +..++.|++..
T Consensus 112 ~~~~~~c~~~~dg~ir~~n~~p~-----k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~--d~~~k~W~ve~ 178 (238)
T KOG2444|consen 112 RDSSLGCVGAQDGRIRACNIKPN-----KVLGYVGQHNFESGEELIVVGSDEFLKIADTSH--DRVLKKWNVEK 178 (238)
T ss_pred cccceeEEeccCCceeeeccccC-----ceeeeeccccCCCcceeEEecCCceEEeecccc--chhhhhcchhh
Confidence 34558889999999999999876 6666666666 556666666666666666 54 66777777654
No 427
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.13 E-value=3.3 Score=46.71 Aligned_cols=282 Identities=15% Similarity=0.083 Sum_probs=138.3
Q ss_pred CCCeeEEEEcCC----CCEEEEEe---CCCcEEEEEecCCCCceeEEEEeC-CcCeEEEE--EeeC-CCEEEEEeCCCeE
Q 043172 262 TGPINSVQFHRN----AQLLLVAG---LDRRLRFFQIDGKRNTKIQSIFLE-DCPVRKAS--FLPD-GSQAIIAGRRKFF 330 (564)
Q Consensus 262 ~~~V~~l~fspd----g~~l~s~s---~dg~I~lwd~~~~~~~~~~~~~~~-~~~I~~l~--fspd-g~~l~s~~~dg~i 330 (564)
-+||..++.-.. +..++|++ .||++++....-+ -..+..+... -..++.+. +.++ .++|+.+-.+ .-
T Consensus 353 LgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~-I~e~A~i~l~Gikg~w~lk~~v~~~~d~ylvlsf~~-eT 430 (1096)
T KOG1897|consen 353 LGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIG-IDELASIDLPGIKGMWSLKSMVDENYDNYLVLSFIS-ET 430 (1096)
T ss_pred ccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccc-cceeeEeecCCccceeEeeccccccCCcEEEEEecc-ce
Confidence 468888876542 23444443 3899999864321 1122222221 23344554 3331 2355554333 23
Q ss_pred EEEECCCCceeeeccccccCCcceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEE
Q 043172 331 YSLDLVKAKADKIGPLVGREEKSLEFFEVSP-DSSVIAFVGNEGYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLS 409 (564)
Q Consensus 331 ~iwdl~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~la~~~~dg~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s 409 (564)
++..+... .. .....+... ....+..|. .|+.|+=.. ...|++++-. ..+......+.++....+.+...++.
T Consensus 431 rvl~i~~e-~e-e~~~~gf~~-~~~Tif~S~i~g~~lvQvT-s~~iRl~ss~--~~~~~W~~p~~~ti~~~~~n~sqVvv 504 (1096)
T KOG1897|consen 431 RVLNISEE-VE-ETEDPGFST-DEQTIFCSTINGNQLVQVT-SNSIRLVSSA--GLRSEWRPPGKITIGVVSANASQVVV 504 (1096)
T ss_pred EEEEEccc-eE-Eeccccccc-cCceEEEEccCCceEEEEe-cccEEEEcch--hhhhcccCCCceEEEEEeecceEEEE
Confidence 34443322 11 111222111 112222222 333333222 2456666643 23333444555666666666667888
Q ss_pred EeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCC------CEEEEEeCCCcEEEEeCCcccCCcceeeEEc----c
Q 043172 410 SGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDG------TFFAAGSDSGIVNVYNRQEFLGGKRKPIKTI----E 479 (564)
Q Consensus 410 ~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g------~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~----~ 479 (564)
++.++.+....+............-...+.|+.++|-| +++++|..+..+.+.-..... ..+... .
T Consensus 505 A~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~----~~~~~~~l~~~ 580 (1096)
T KOG1897|consen 505 AGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDL----ILITHEQLSGE 580 (1096)
T ss_pred ecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCc----ceeeeeccCCC
Confidence 88888888888776653333333334467888888742 378888877665544332210 111111 1
Q ss_pred ccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceecc-CCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEE
Q 043172 480 NLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSN-WPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYK 557 (564)
Q Consensus 480 ~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~-~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~ 557 (564)
.....|.-..|-.|..+|.++.+ ||.+.-+-+...+.... .....-...++.--.|+..++.-+.+..|.=..+|.
T Consensus 581 ~iPRSIl~~~~e~d~~yLlvalg--dG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~ 657 (1096)
T KOG1897|consen 581 IIPRSILLTTFEGDIHYLLVALG--DGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYS 657 (1096)
T ss_pred ccchheeeEEeeccceEEEEEcC--CceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEe
Confidence 12334555566677889999998 89887766543322211 110111224555556666554333333344344443
No 428
>PHA02790 Kelch-like protein; Provisional
Probab=96.11 E-value=0.21 Score=53.73 Aligned_cols=185 Identities=10% Similarity=-0.034 Sum_probs=94.3
Q ss_pred CCCEEEEEeCCC-----cEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCC--CeEEEEECCCCceeeecc
Q 043172 273 NAQLLLVAGLDR-----RLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRR--KFFYSLDLVKAKADKIGP 345 (564)
Q Consensus 273 dg~~l~s~s~dg-----~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~d--g~i~iwdl~~~~~~~~~~ 345 (564)
++.++++||.++ ++..||........+..+....... +++ .-+|...++||.+ ..+..||..+++...+.+
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 456667777543 4555665543222222222211111 222 2356666666643 468889988877766555
Q ss_pred ccccCCcceEEEEEcCCCCEEEEEeCC---CeEEEEECCCCcEEEEeeecCcEE-EEEEecCCCEEEEEeCCCeEEEEEC
Q 043172 346 LVGREEKSLEFFEVSPDSSVIAFVGNE---GYILLVSSKTKELIGTLKMNGTVR-SLAFADDGKQLLSSGGDGQVYHWDL 421 (564)
Q Consensus 346 ~~~~~~~~v~~~~~spdg~~la~~~~d---g~I~lwd~~t~~~~~~~~~~~~V~-~l~~spdg~~l~s~s~dg~V~lwD~ 421 (564)
+..... .. ....-+|+..++||.+ ..+..||..+.++...-....+.. ..+..-+++..+.| |.+.+||.
T Consensus 349 l~~~r~-~~--~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G---G~~e~ydp 422 (480)
T PHA02790 349 LLKPRC-NP--AVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG---RNAEFYCE 422 (480)
T ss_pred CCCCCc-cc--EEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC---CceEEecC
Confidence 543221 11 2223367777887765 347789998888765433221111 11112345555555 35778898
Q ss_pred CCCceeEEEeecCCcceEEEEECCCCCEEEEEeCC-----CcEEEEeCCc
Q 043172 422 RTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDS-----GIVNVYNRQE 466 (564)
Q Consensus 422 ~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~d-----g~V~iwd~~~ 466 (564)
.+.+-...-.........+++. -+|+..++|+.+ ..|.+||..+
T Consensus 423 ~~~~W~~~~~m~~~r~~~~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 423 SSNTWTLIDDPIYPRDNPELII-VDNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred CCCcEeEcCCCCCCccccEEEE-ECCEEEEECCcCCCcccceEEEEECCC
Confidence 7765432211111111112222 366777787754 3466777665
No 429
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=96.04 E-value=0.39 Score=49.81 Aligned_cols=145 Identities=19% Similarity=0.255 Sum_probs=95.3
Q ss_pred cCCCCEEEE-EeCCCeEEEEECCCCcEEEEeeecCcEEEEEEecCC-------CEEEEEeCCCeEEEEECCCCc-eeE--
Q 043172 360 SPDSSVIAF-VGNEGYILLVSSKTKELIGTLKMNGTVRSLAFADDG-------KQLLSSGGDGQVYHWDLRTRT-CIH-- 428 (564)
Q Consensus 360 spdg~~la~-~~~dg~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg-------~~l~s~s~dg~V~lwD~~~~~-~~~-- 428 (564)
..+.++|+. ++....++-.|+..|+.+........| -+.|.|.. ..-++|-.+..|.-.|.+-.. .+.
T Consensus 476 ~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~ 554 (776)
T COG5167 476 DNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV 554 (776)
T ss_pred cCCcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee
Confidence 345555554 444567888899999999888854445 66777743 123345455667777776433 221
Q ss_pred EEeec-CCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCe
Q 043172 429 RAVDE-GCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNS 507 (564)
Q Consensus 429 ~~~~~-~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~ 507 (564)
..... ......+..- ....|+|+||..|-|++||.-.. ..-..+.+....|-.+..+.+|.++++.+ .+.
T Consensus 555 esKdY~tKn~Fss~~t-TesGyIa~as~kGDirLyDRig~-----rAKtalP~lG~aIk~idvta~Gk~ilaTC---k~y 625 (776)
T COG5167 555 ESKDYKTKNKFSSGMT-TESGYIAAASRKGDIRLYDRIGK-----RAKTALPGLGDAIKHIDVTANGKHILATC---KNY 625 (776)
T ss_pred eehhcccccccccccc-ccCceEEEecCCCceeeehhhcc-----hhhhcCcccccceeeeEeecCCcEEEEee---cce
Confidence 11111 1111122222 23459999999999999997654 44455677889999999999999998877 578
Q ss_pred EEEEEcC
Q 043172 508 LKLIHIP 514 (564)
Q Consensus 508 I~lwdl~ 514 (564)
+-|.+++
T Consensus 626 llL~d~~ 632 (776)
T COG5167 626 LLLTDVP 632 (776)
T ss_pred EEEEecc
Confidence 8888875
No 430
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=96.02 E-value=1.4 Score=44.53 Aligned_cols=107 Identities=18% Similarity=0.193 Sum_probs=58.8
Q ss_pred CCCEEEEEeCC-----CeEEEEECCCCce----eeeccccccCCcceEEEEEcCCCCEEEEEeC-----CCeEEEEECCC
Q 043172 317 DGSQAIIAGRR-----KFFYSLDLVKAKA----DKIGPLVGREEKSLEFFEVSPDSSVIAFVGN-----EGYILLVSSKT 382 (564)
Q Consensus 317 dg~~l~s~~~d-----g~i~iwdl~~~~~----~~~~~~~~~~~~~v~~~~~spdg~~la~~~~-----dg~I~lwd~~t 382 (564)
++..++.|+.+ ..+..||+.+... ..+..++.... .. +++. -++++.++|+. ...+..||+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~-~~-~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~ 148 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFE-NG-SACY-KDGTLYVGGGNRNGKPSNKSYLFNLET 148 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCcc-Cc-eEEE-ECCEEEEEeCcCCCccCceEEEEcCCC
Confidence 45555666643 3577788877654 22222322211 11 1222 25667777764 24688999998
Q ss_pred CcEEEEeeec--CcEEEEEEecCCCEEEEEeCCC----eEEEEECCCCce
Q 043172 383 KELIGTLKMN--GTVRSLAFADDGKQLLSSGGDG----QVYHWDLRTRTC 426 (564)
Q Consensus 383 ~~~~~~~~~~--~~V~~l~~spdg~~l~s~s~dg----~V~lwD~~~~~~ 426 (564)
.++...-... ......+...++++.+.|+.++ .+.+||+.+.+-
T Consensus 149 ~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 149 QEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred CCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 8876543211 2222233334677777777653 356888887654
No 431
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=95.97 E-value=1.8 Score=42.46 Aligned_cols=222 Identities=13% Similarity=0.062 Sum_probs=124.3
Q ss_pred eEEEEEeeCCCEEEEEeCCCeEEEEECC------CCceeeeccccc----cCCcceEEEEEcCCCC------------EE
Q 043172 309 VRKASFLPDGSQAIIAGRRKFFYSLDLV------KAKADKIGPLVG----REEKSLEFFEVSPDSS------------VI 366 (564)
Q Consensus 309 I~~l~fspdg~~l~s~~~dg~i~iwdl~------~~~~~~~~~~~~----~~~~~v~~~~~spdg~------------~l 366 (564)
-..++|+|.+..-++....+...+||.. ..+.. +..++. ......+.+.|+.... .+
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L-~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPL-VVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccce-EEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 3678999988888877778899999986 12111 112221 1112456666664322 36
Q ss_pred EEEeCCCeEEEEECCCCcE-----EEEee--ecCc-EEEEEEecC--CCEEEEEe-CCCeEEEEECCCCcee--EEEeec
Q 043172 367 AFVGNEGYILLVSSKTKEL-----IGTLK--MNGT-VRSLAFADD--GKQLLSSG-GDGQVYHWDLRTRTCI--HRAVDE 433 (564)
Q Consensus 367 a~~~~dg~I~lwd~~t~~~-----~~~~~--~~~~-V~~l~~spd--g~~l~s~s-~dg~V~lwD~~~~~~~--~~~~~~ 433 (564)
+.++.+|+|.-|...-... ...+. ..+. -..+++... +.+|+.+. ..++|-+||-.-.... ..+.+.
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 7788999999998532222 11222 1222 345666543 55666554 4788999886533221 111111
Q ss_pred ------CCcceEEE---------EECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEcc--ccccceeEEEEcC----
Q 043172 434 ------GCINGTAL---------CTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIE--NLTTKVDFMKFNN---- 492 (564)
Q Consensus 434 ------~~~~i~~l---------~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~--~~~~~I~~l~fsp---- 492 (564)
....|..| .-.++.+.=+.|..-|.|.+||... ..++.+. +.-...+.|+..|
T Consensus 184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G------~l~~r~as~g~LNaPWG~a~APa~FG 257 (336)
T TIGR03118 184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG------QLLRRVASSGRLNAPWGLAIAPESFG 257 (336)
T ss_pred CCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCC------cEEEEeccCCcccCCceeeeChhhhC
Confidence 01111111 1122222223344557899999886 5666553 3334566777765
Q ss_pred --CCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCC---CCCcEEEEEeC
Q 043172 493 --DAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRN---LQYPRCLDFSP 539 (564)
Q Consensus 493 --dg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~---~~~V~~l~fsp 539 (564)
.|.+|+ +... ||+|..+|..++..+..+....++ ....+.|+|..
T Consensus 258 ~~sg~lLV-GNFG-DG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 258 SLSGALLV-GNFG-DGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCCCCeEE-eecC-CceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 355554 4443 999999999988876655443322 13468888865
No 432
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.97 E-value=0.11 Score=58.44 Aligned_cols=148 Identities=12% Similarity=0.006 Sum_probs=94.0
Q ss_pred cCcEEEEEEecCCCEEEEEeC--CCeEEEEECCCCceeE----------EEeecCCcceEEEEECCCCC-EEEEEeCCCc
Q 043172 392 NGTVRSLAFADDGKQLLSSGG--DGQVYHWDLRTRTCIH----------RAVDEGCINGTALCTSPDGT-FFAAGSDSGI 458 (564)
Q Consensus 392 ~~~V~~l~~spdg~~l~s~s~--dg~V~lwD~~~~~~~~----------~~~~~~~~~i~~l~~sp~g~-~lasgs~dg~ 458 (564)
.-++..+...+|+...++... +-.|+.||+++-..-. ...........++.|.|.=. ..|+...|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 345666777777765554433 3479999997532111 01112233456777887632 4566778888
Q ss_pred EEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCC-CCCCcEEEEE
Q 043172 459 VNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANR-NLQYPRCLDF 537 (564)
Q Consensus 459 V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~-~~~~V~~l~f 537 (564)
|.|..+... .+..+--......++++|+|.|..+++|-. .|++.-|.. ++.....++.... ..++|.+|+|
T Consensus 180 l~V~~~~~~-----~~~v~s~p~t~~~Tav~WSprGKQl~iG~n--nGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~W 251 (1405)
T KOG3630|consen 180 LRVKSTKQL-----AQNVTSFPVTNSQTAVLWSPRGKQLFIGRN--NGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTW 251 (1405)
T ss_pred hhhhhhhhh-----hhhhcccCcccceeeEEeccccceeeEecC--CCeEEEeec-ccceeecccCCCcCCCcceeEEEE
Confidence 988887653 222222235677899999999999999987 788877754 3444444433322 2478999999
Q ss_pred eCCCCEEEEE
Q 043172 538 SPGGGFMAVG 547 (564)
Q Consensus 538 spdg~~Lasg 547 (564)
-..-.+|++-
T Consensus 252 l~t~eflvvy 261 (1405)
T KOG3630|consen 252 LSTQEFLVVY 261 (1405)
T ss_pred ecceeEEEEe
Confidence 8877777653
No 433
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=95.95 E-value=0.22 Score=53.67 Aligned_cols=69 Identities=19% Similarity=0.215 Sum_probs=47.2
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEE
Q 043172 261 STGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLD 334 (564)
Q Consensus 261 h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwd 334 (564)
....+++++-||.|+-++.+..||+|++|++...+..++.... .|-..+.|...| |+++..|+.+.-|.
T Consensus 13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~---~p~~nlv~tnhg--l~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEA---KPKENLVFTNHG--LVTATSDRRALAWK 81 (1636)
T ss_pred ccceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhc---CCccceeeeccc--eEEEeccchhheee
Confidence 3456889999999999999999999999998765444444332 344556665444 44444555566664
No 434
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.94 E-value=3.9 Score=45.99 Aligned_cols=73 Identities=15% Similarity=0.282 Sum_probs=52.0
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCC---------CcE---EEEee---------ecCcEEEEEEecC---CCEEE
Q 043172 353 SLEFFEVSPDSSVIAFVGNEGYILLVSSKT---------KEL---IGTLK---------MNGTVRSLAFADD---GKQLL 408 (564)
Q Consensus 353 ~v~~~~~spdg~~la~~~~dg~I~lwd~~t---------~~~---~~~~~---------~~~~V~~l~~spd---g~~l~ 408 (564)
.|..+.++|+|.++|..|..|.+.+.=.+. +.. .+++. ....|..+.|+|. +..|+
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~ 165 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLV 165 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEE
Confidence 588999999999999999866444332211 111 11221 2347899999995 57899
Q ss_pred EEeCCCeEEEEECCCCc
Q 043172 409 SSGGDGQVYHWDLRTRT 425 (564)
Q Consensus 409 s~s~dg~V~lwD~~~~~ 425 (564)
+-+.|+++++||+....
T Consensus 166 vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 166 VLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEecCCEEEEEecCCCC
Confidence 99999999999997643
No 435
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.92 E-value=2.5 Score=47.90 Aligned_cols=195 Identities=10% Similarity=0.150 Sum_probs=114.6
Q ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEeeecCc---------EEEEEEec----------------CCCEEEEEeCCCeEE
Q 043172 363 SSVIAFVGNEGYILLVSSKTKELIGTLKMNGT---------VRSLAFAD----------------DGKQLLSSGGDGQVY 417 (564)
Q Consensus 363 g~~la~~~~dg~I~lwd~~t~~~~~~~~~~~~---------V~~l~~sp----------------dg~~l~s~s~dg~V~ 417 (564)
+..|++++.++.|.-+|..+|+.+..+..... .+.+++.. .+..|+.++.|+.|+
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 56777788889999999999998887763222 22333321 234788888999999
Q ss_pred EEECCCCceeEEEeecCCcce-----------EEEEECC--CCCEEEEEeC----------CCcEEEEeCCcccCCccee
Q 043172 418 HWDLRTRTCIHRAVDEGCING-----------TALCTSP--DGTFFAAGSD----------SGIVNVYNRQEFLGGKRKP 474 (564)
Q Consensus 418 lwD~~~~~~~~~~~~~~~~~i-----------~~l~~sp--~g~~lasgs~----------dg~V~iwd~~~~~~~~~~~ 474 (564)
-.|..+++.+..+...+.+.. ..+.-.| .+..+++|+. +|.|+-||..++ +.
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TG-----kl 348 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTG-----AL 348 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCC-----cE
Confidence 999999998876543221100 0111112 1345666643 688999999887 44
Q ss_pred eEEccc-----------------cccce-eEEEEcCCCcEEEEEecC----------------CCCeEEEEEcCCCceec
Q 043172 475 IKTIEN-----------------LTTKV-DFMKFNNDAQILAICSTM----------------KKNSLKLIHIPSYNVFS 520 (564)
Q Consensus 475 ~~~~~~-----------------~~~~I-~~l~fspdg~~La~~s~~----------------~d~~I~lwdl~s~~~~~ 520 (564)
+-.+.. -...+ ..+++.+...+++.+.+. -.++|.-.|+.+++..-
T Consensus 349 ~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W 428 (764)
T TIGR03074 349 VWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERW 428 (764)
T ss_pred eeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEE
Confidence 433321 00111 234555555555543320 02556667777777654
Q ss_pred cCCCCCC------CCCCcEEEEEeC-CCC---EEEEEcCCCeEEEEEcCCCC
Q 043172 521 NWPPANR------NLQYPRCLDFSP-GGG---FMAVGNAAGKVFLYKLNHYH 562 (564)
Q Consensus 521 ~~~~~~~------~~~~V~~l~fsp-dg~---~Lasgs~dG~V~lw~l~~~~ 562 (564)
.+..... ......-+.+.. +|+ .++.++.+|.++++|-.+.+
T Consensus 429 ~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~ 480 (764)
T TIGR03074 429 VFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGE 480 (764)
T ss_pred EecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCC
Confidence 4433210 001122233433 553 78899999999999987765
No 436
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=95.90 E-value=3.3 Score=44.86 Aligned_cols=245 Identities=13% Similarity=0.151 Sum_probs=110.0
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCC-----CCceeEEEE-eCCcCeEEEEEee-----CCCEEEEE--eCCC
Q 043172 262 TGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGK-----RNTKIQSIF-LEDCPVRKASFLP-----DGSQAIIA--GRRK 328 (564)
Q Consensus 262 ~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~-----~~~~~~~~~-~~~~~I~~l~fsp-----dg~~l~s~--~~dg 328 (564)
..+-..++.+|.|+.++.+...+.+.||-+... ........+ .....|..++|.. +...+++- ...+
T Consensus 43 ~~~G~~l~vDP~~R~i~v~a~e~~~~v~~l~~~~~~~~~~~~~~~~pi~s~~~i~~~~FL~~~~~~~~p~la~L~~~~~~ 122 (504)
T PF10433_consen 43 SQPGQYLAVDPSGRCIAVSAYEGNFLVYPLNRSLDSDIAFSPHINSPIKSEGNILDMCFLHPSVGYDNPTLAILYVDSQR 122 (504)
T ss_dssp -TT--EEEE-TTSSEEEEEEBTTEEEEEE-SS----T-TT---EEEE--S-SEEEEEEEES---S-SS-EEEEEEEETT-
T ss_pred hcCCcEEEECCcCCEEEEEecCCeEEEEEecccccccccccccccccccCCceEEEEEEEecccCCCCceEEEEEEEecc
Confidence 345678899999999999999999999988750 111111111 1356788888885 22233332 2222
Q ss_pred --eEE--EEECCCCceeeeccccc------cCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCC--C-cEEEEeee----
Q 043172 329 --FFY--SLDLVKAKADKIGPLVG------REEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKT--K-ELIGTLKM---- 391 (564)
Q Consensus 329 --~i~--iwdl~~~~~~~~~~~~~------~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t--~-~~~~~~~~---- 391 (564)
.+. -|+...+....+..... ....+..-+.+......+++++. +.+.+-+... + .....+..
T Consensus 123 ~~~~~~y~w~~~~~l~~~~~~~~~~~~l~~~~~~p~~LIPlp~~~ggllV~~~-~~i~y~~~~~~~~~~~~~~~~~~~~~ 201 (504)
T PF10433_consen 123 RTHLVTYEWSLDDGLNHVISKSTLPIRLPNEDELPSFLIPLPNPPGGLLVGGE-NIIIYKNHLIGSGDYSFLSIPSPPSS 201 (504)
T ss_dssp EEEEEEEE--------EETTTTEEEE--EEEE-TTEEEEEE-TTT-SEEEEES-SEEEEEE------TTEEEEE--H-HH
T ss_pred cceeEEEeeecccccceeeeeccccccccccCCCccEEEEcCCCCcEEEEECC-EEEEEecccccccccccccccCCccC
Confidence 233 34444432211111110 01112222222222223333333 3333332211 1 11112221
Q ss_pred -cCcEEEEEE-------ecCCCEEEEEeCCCeEEEEECCCCce--eEEEeecCCcceEEEEECCCC-CEEEEEeCCC--c
Q 043172 392 -NGTVRSLAF-------ADDGKQLLSSGGDGQVYHWDLRTRTC--IHRAVDEGCINGTALCTSPDG-TFFAAGSDSG--I 458 (564)
Q Consensus 392 -~~~V~~l~~-------spdg~~l~s~s~dg~V~lwD~~~~~~--~~~~~~~~~~~i~~l~~sp~g-~~lasgs~dg--~ 458 (564)
..-+++.++ ..++..++.+..+|.++...+..... .....+.-....+++++-.+| .+|++||.-| .
T Consensus 202 ~~~~~~~~~~p~~~~~~~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~ 281 (504)
T PF10433_consen 202 SSSLWTSWARPERNISYDKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQ 281 (504)
T ss_dssp HTS-EEEEEE------SSTTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EE
T ss_pred CCceEEEEEeccccceecCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcE
Confidence 223344433 34577888999999999988765331 122222202234566665554 4777787655 4
Q ss_pred EEEEeCCcccCCcceeeEEccccccceeEEEEcCC-----C------cEEEEEecCCCCeEEEEEc
Q 043172 459 VNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNND-----A------QILAICSTMKKNSLKLIHI 513 (564)
Q Consensus 459 V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspd-----g------~~La~~s~~~d~~I~lwdl 513 (564)
+.-|.... ...+.++.+ -+||..+++.+. . +++++++.+++|+++++.-
T Consensus 282 l~~~~~~~-----l~~~~~~~N-~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~ 341 (504)
T PF10433_consen 282 LLQISLSN-----LEVLDSLPN-WGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRN 341 (504)
T ss_dssp EEEEESES-----EEEEEEE-----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEE
T ss_pred EEEEeCCC-----cEEEEeccC-cCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEec
Confidence 44444332 255656654 478888887532 1 4556655566889998854
No 437
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.81 E-value=0.03 Score=38.76 Aligned_cols=33 Identities=6% Similarity=0.213 Sum_probs=29.6
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecC
Q 043172 261 STGPINSVQFHRNAQLLLVAGLDRRLRFFQIDG 293 (564)
Q Consensus 261 h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~ 293 (564)
....|.+++|+|...+||.|..+|.|.||.++.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence 345799999999999999999999999998854
No 438
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=95.81 E-value=0.13 Score=52.47 Aligned_cols=163 Identities=18% Similarity=0.175 Sum_probs=94.3
Q ss_pred ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeE-EEeec-CC---cceE-EEEECCCCCEEEEEeCCCcEEEE-e
Q 043172 391 MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIH-RAVDE-GC---INGT-ALCTSPDGTFFAAGSDSGIVNVY-N 463 (564)
Q Consensus 391 ~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~-~~~~~-~~---~~i~-~l~~sp~g~~lasgs~dg~V~iw-d 463 (564)
....|..+-..|+|+.|++-+. .++.++++.+..... ++... .+ ..++ .+..-..|.-+.+++.||.|.-| |
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred CccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeee
Confidence 3456778889999999988776 688888887644322 22211 11 1111 11122355677888889888766 5
Q ss_pred CCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCE
Q 043172 464 RQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGF 543 (564)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~ 543 (564)
.+.........++.+.-...++..+.--.+.+-+++-+. +|++.+++..+...+-.-+.. ..+.-+++||++.+
T Consensus 298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~--~G~L~~f~st~~~~lL~~~~~----~~~~~~~~Sp~~~~ 371 (733)
T COG4590 298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYR--NGTLQSFYSTSEKLLLFERAY----QAPQLVAMSPNQAY 371 (733)
T ss_pred eecCCCCcceeeeccccCcccceeeccccccceEEEEcC--CCceeeeecccCcceehhhhh----cCcceeeeCcccch
Confidence 554421122223333322344444433333344454455 788888776554433211111 34667899999999
Q ss_pred EEEEcCCCeEEEEEcCCC
Q 043172 544 MAVGNAAGKVFLYKLNHY 561 (564)
Q Consensus 544 Lasgs~dG~V~lw~l~~~ 561 (564)
|++- ..|+++++.+.+.
T Consensus 372 Ll~e-~~gki~~~~l~Nr 388 (733)
T COG4590 372 LLSE-DQGKIRLAQLENR 388 (733)
T ss_pred heee-cCCceEEEEecCC
Confidence 9875 4678999998753
No 439
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=95.80 E-value=2.9 Score=43.52 Aligned_cols=147 Identities=17% Similarity=0.143 Sum_probs=83.1
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEE-EEECCCCcEEE-EeeecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCc-----e
Q 043172 354 LEFFEVSPDSSVIAFVGNEGYIL-LVSSKTKELIG-TLKMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRT-----C 426 (564)
Q Consensus 354 v~~~~~spdg~~la~~~~dg~I~-lwd~~t~~~~~-~~~~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~-----~ 426 (564)
...+..+++|.+++++.. |.+. -|+--...+.. .......++++.|.+++..++++ ..|.+.. ....+. .
T Consensus 241 f~~v~~~~dG~~~~vg~~-G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~ 317 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSR-GNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDFD 317 (398)
T ss_pred eeeEEEcCCCCEEEEECC-ccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccccc
Confidence 444566788887777654 4443 34322111222 22245678999999998877655 5566543 333333 1
Q ss_pred eEEEeec-CCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCC
Q 043172 427 IHRAVDE-GCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKK 505 (564)
Q Consensus 427 ~~~~~~~-~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d 505 (564)
....... ....++.+.+.+++..+++| ..|.+.+.. ..+ ...+...........++.+.|.++++.+++|. +
T Consensus 318 f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G--~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~---~ 390 (398)
T PLN00033 318 FEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGG--KSWKRDKGADNIAANLYSVKFFDDKKGFVLGN---D 390 (398)
T ss_pred eeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCC--cceeEccccCCCCcceeEEEEcCCCceEEEeC---C
Confidence 1222111 22357888898887765554 567665553 222 22233332234456788999988888888776 4
Q ss_pred CeEEE
Q 043172 506 NSLKL 510 (564)
Q Consensus 506 ~~I~l 510 (564)
|.|.-
T Consensus 391 G~il~ 395 (398)
T PLN00033 391 GVLLR 395 (398)
T ss_pred cEEEE
Confidence 66543
No 440
>PLN02193 nitrile-specifier protein
Probab=95.77 E-value=3.5 Score=44.20 Aligned_cols=198 Identities=13% Similarity=0.090 Sum_probs=95.5
Q ss_pred CCCEEEEEeCC-------CeEEEEECCCCceeeeccccccCC-cceEEEEEcCCCCEEEEEeCC-----CeEEEEECCCC
Q 043172 317 DGSQAIIAGRR-------KFFYSLDLVKAKADKIGPLVGREE-KSLEFFEVSPDSSVIAFVGNE-----GYILLVSSKTK 383 (564)
Q Consensus 317 dg~~l~s~~~d-------g~i~iwdl~~~~~~~~~~~~~~~~-~~v~~~~~spdg~~la~~~~d-----g~I~lwd~~t~ 383 (564)
++..++.|+.+ ..+.+||+.+.+...+........ .........-++.++++|+.+ ..+..||+.+.
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~ 254 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTN 254 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCC
Confidence 34455555532 247889998877654321100100 011111222346666777754 46889999988
Q ss_pred cEEEEeee---cCcE-EEEEEecCCCEEEEEeCC-----CeEEEEECCCCceeEEEee---cCCcceEEEEECCCCCEEE
Q 043172 384 ELIGTLKM---NGTV-RSLAFADDGKQLLSSGGD-----GQVYHWDLRTRTCIHRAVD---EGCINGTALCTSPDGTFFA 451 (564)
Q Consensus 384 ~~~~~~~~---~~~V-~~l~~spdg~~l~s~s~d-----g~V~lwD~~~~~~~~~~~~---~~~~~i~~l~~sp~g~~la 451 (564)
++...... ..+. ...+..-++++++.|+.+ ..+..||+.+.+-...-.. ........++. -+++.++
T Consensus 255 ~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~-~~gkiyv 333 (470)
T PLN02193 255 EWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEV-VQGKVWV 333 (470)
T ss_pred EEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEE-ECCcEEE
Confidence 77653221 1111 111122245666666654 3477888876543221110 00001112222 2567777
Q ss_pred EEeCC----CcEEEEeCCcccCCcceeeEEccc-cccceeEEEEcCCCcEEEEEecCC------------CCeEEEEEcC
Q 043172 452 AGSDS----GIVNVYNRQEFLGGKRKPIKTIEN-LTTKVDFMKFNNDAQILAICSTMK------------KNSLKLIHIP 514 (564)
Q Consensus 452 sgs~d----g~V~iwd~~~~~~~~~~~~~~~~~-~~~~I~~l~fspdg~~La~~s~~~------------d~~I~lwdl~ 514 (564)
.|+.+ ..|.+||+.+. .+..+..... ......+.+..-+++++++|+... .+.+.++|+.
T Consensus 334 iGG~~g~~~~dv~~yD~~t~---~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~ 410 (470)
T PLN02193 334 VYGFNGCEVDDVHYYDPVQD---KWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTE 410 (470)
T ss_pred EECCCCCccCceEEEECCCC---EEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcC
Confidence 77654 45889998764 2233322210 011111112223566777776421 1357888887
Q ss_pred CCce
Q 043172 515 SYNV 518 (564)
Q Consensus 515 s~~~ 518 (564)
+.+-
T Consensus 411 t~~W 414 (470)
T PLN02193 411 TLQW 414 (470)
T ss_pred cCEE
Confidence 6543
No 441
>PLN02153 epithiospecifier protein
Probab=95.75 E-value=2.8 Score=42.84 Aligned_cols=98 Identities=10% Similarity=0.047 Sum_probs=51.4
Q ss_pred eEEEEECCCCceeeeccccccCCc-ceEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCcEEEEeee-----c-CcEE
Q 043172 329 FFYSLDLVKAKADKIGPLVGREEK-SLEFFEVSPDSSVIAFVGNE-----GYILLVSSKTKELIGTLKM-----N-GTVR 396 (564)
Q Consensus 329 ~i~iwdl~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~la~~~~d-----g~I~lwd~~t~~~~~~~~~-----~-~~V~ 396 (564)
.+++||+.+.+............. ........-++.++++||.+ ..+.+||+.+.++...-.. . ....
T Consensus 51 ~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~ 130 (341)
T PLN02153 51 DLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTF 130 (341)
T ss_pred cEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCcee
Confidence 578888888766544322111110 00111122246677777753 3588899988877543221 1 1111
Q ss_pred EEEEecCCCEEEEEeCC-----------CeEEEEECCCCce
Q 043172 397 SLAFADDGKQLLSSGGD-----------GQVYHWDLRTRTC 426 (564)
Q Consensus 397 ~l~~spdg~~l~s~s~d-----------g~V~lwD~~~~~~ 426 (564)
..+..-++++++.|+.+ ..|.+||+.+.+-
T Consensus 131 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W 171 (341)
T PLN02153 131 HSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKW 171 (341)
T ss_pred eEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeE
Confidence 12222356666676643 2578889887543
No 442
>PHA02790 Kelch-like protein; Provisional
Probab=95.73 E-value=0.62 Score=50.09 Aligned_cols=187 Identities=7% Similarity=-0.029 Sum_probs=95.3
Q ss_pred CCCEEEEEeCC-----CeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCC--CeEEEEECCCCcEEEEe
Q 043172 317 DGSQAIIAGRR-----KFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNE--GYILLVSSKTKELIGTL 389 (564)
Q Consensus 317 dg~~l~s~~~d-----g~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d--g~I~lwd~~t~~~~~~~ 389 (564)
++..+++||.+ ..+..||..++....+..+..... ... + ..-++.+.++||.+ ..+..|+..++++...-
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~-~~~-~-v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~ 347 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRL-YAS-G-VPANNKLYVVGGLPNPTSVERWFHGDAAWVNMP 347 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhh-cce-E-EEECCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence 34444556543 357789998887766655543222 111 2 23467777777753 45888998887775543
Q ss_pred eecCcEEE-EEEecCCCEEEEEeCCC---eEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 043172 390 KMNGTVRS-LAFADDGKQLLSSGGDG---QVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQ 465 (564)
Q Consensus 390 ~~~~~V~~-l~~spdg~~l~s~s~dg---~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~ 465 (564)
....+... ....-+|+..+.||.++ .+..||..+.+-...-.........+++ .-+|...+.|+ .+.+||..
T Consensus 348 ~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~-~~~~~IYv~GG---~~e~ydp~ 423 (480)
T PHA02790 348 SLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCAL-VFGRRLFLVGR---NAEFYCES 423 (480)
T ss_pred CCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEE-EECCEEEEECC---ceEEecCC
Confidence 32222211 12223677777777543 4778888765433211111111111222 23566667763 57789887
Q ss_pred cccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCC---CeEEEEEcCC
Q 043172 466 EFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKK---NSLKLIHIPS 515 (564)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d---~~I~lwdl~s 515 (564)
+. .+..+..+.........+ .-+|++.++|+.... ..+..||..+
T Consensus 424 ~~---~W~~~~~m~~~r~~~~~~--v~~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 424 SN---TWTLIDDPIYPRDNPELI--IVDNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred CC---cEeEcCCCCCCccccEEE--EECCEEEEECCcCCCcccceEEEEECCC
Confidence 53 334333332212222222 236677777764211 2455555544
No 443
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.58 E-value=0.47 Score=51.79 Aligned_cols=111 Identities=15% Similarity=0.144 Sum_probs=74.6
Q ss_pred CeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEc--CCCCEEEEEeCCCeEEEEECC----
Q 043172 308 PVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVS--PDSSVIAFVGNEGYILLVSSK---- 381 (564)
Q Consensus 308 ~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~s--pdg~~la~~~~dg~I~lwd~~---- 381 (564)
.+.-+.-|.-++..++-+....+.|||...+.......+.. ...|..+.|. |+|+.+++.|..+.|.+|.-.
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~--~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSE--DDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecC--CCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 44444445545444555566789999999988655544422 2368888885 689999999999999998542
Q ss_pred -----CCcEEEEee---e-cCcEEEEEEecCCCEEEEEeCCCeEEEEECC
Q 043172 382 -----TKELIGTLK---M-NGTVRSLAFADDGKQLLSSGGDGQVYHWDLR 422 (564)
Q Consensus 382 -----t~~~~~~~~---~-~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~ 422 (564)
+-.++..+. + ..+|.+..|.++|.+++.+ ...+.|+|-.
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDKW 156 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECCC
Confidence 123344443 2 3689999999999755544 3578888754
No 444
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.58 E-value=0.44 Score=52.48 Aligned_cols=110 Identities=13% Similarity=0.213 Sum_probs=72.7
Q ss_pred CCCEEEEEeCCCcEEEEeCCccc---------------CCcceeeEEccccccceeEEEEc--CCCcEEEEEecCCCCeE
Q 043172 446 DGTFFAAGSDSGIVNVYNRQEFL---------------GGKRKPIKTIENLTTKVDFMKFN--NDAQILAICSTMKKNSL 508 (564)
Q Consensus 446 ~g~~lasgs~dg~V~iwd~~~~~---------------~~~~~~~~~~~~~~~~I~~l~fs--pdg~~La~~s~~~d~~I 508 (564)
+...|+++.+||.|.+|.+.... ....+|...+. ....+++++++ ...++||+++. ...|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsN--s~~V 189 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSN--SQEV 189 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecC--CceE
Confidence 44588999999999999764321 01122333333 35688999998 88889998887 5677
Q ss_pred EEEEcCCCceeccCCCCCCCCCCcEEEEEeCCC---C---EEEEEcCCCeEEEEEc
Q 043172 509 KLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGG---G---FMAVGNAAGKVFLYKL 558 (564)
Q Consensus 509 ~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg---~---~Lasgs~dG~V~lw~l 558 (564)
.||-+..............+...|.+|+|-++. . +|++++-.|.+.+|++
T Consensus 190 TVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 190 TVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 776654321111111122355678999998753 2 7888999999999888
No 445
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.50 E-value=0.29 Score=54.77 Aligned_cols=78 Identities=18% Similarity=0.310 Sum_probs=50.1
Q ss_pred CcceEEEEECCCCCEEEEEeCCCcEEEEeCCccc------CC-cceeeEEc--------cccccceeEEEEcCC---CcE
Q 043172 435 CINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFL------GG-KRKPIKTI--------ENLTTKVDFMKFNND---AQI 496 (564)
Q Consensus 435 ~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~------~~-~~~~~~~~--------~~~~~~I~~l~fspd---g~~ 496 (564)
...|..|.++|+|++||..+..|.+.+.=.+.+. .+ .....+++ .+....|..+.|+|. +.+
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 3467889999999999998887654443322210 00 11111111 134567888999986 467
Q ss_pred EEEEecCCCCeEEEEEcC
Q 043172 497 LAICSTMKKNSLKLIHIP 514 (564)
Q Consensus 497 La~~s~~~d~~I~lwdl~ 514 (564)
|++-+. |+++|+||+.
T Consensus 164 l~vLts--dn~lR~y~~~ 179 (717)
T PF10168_consen 164 LVVLTS--DNTLRLYDIS 179 (717)
T ss_pred EEEEec--CCEEEEEecC
Confidence 777676 8999999985
No 446
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=95.46 E-value=3.6 Score=42.22 Aligned_cols=192 Identities=18% Similarity=0.211 Sum_probs=110.0
Q ss_pred eCCCEEEEEeCCCeEEEEECCCCceeeeccccccCC--cceEEEEEcCCCCE--EEEEeCC----CeEEEEECC--CCcE
Q 043172 316 PDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREE--KSLEFFEVSPDSSV--IAFVGNE----GYILLVSSK--TKEL 385 (564)
Q Consensus 316 pdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~--~~v~~~~~spdg~~--la~~~~d----g~I~lwd~~--t~~~ 385 (564)
|...+|+.....+-+.+||+.......+. .+... .-...+.+ .|+. |+.++.. ..|.+|.+. ++..
T Consensus 66 p~kSlIigTdK~~GL~VYdL~Gk~lq~~~--~Gr~NNVDvrygf~l--~g~~vDlavas~R~~g~n~l~~f~id~~~g~L 141 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDGKELQSLP--VGRPNNVDVRYGFPL--NGKTVDLAVASDRSDGRNSLRLFRIDPDTGEL 141 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS-EEEEE---SS-EEEEEEEEEEEE--TTEEEEEEEEEE-CCCT-EEEEEEEETTTTEE
T ss_pred cccceEEEEeCCCCEEEEcCCCcEEEeec--CCCcceeeeecceec--CCceEEEEEEecCcCCCCeEEEEEecCCCCcc
Confidence 44567777778889999999877654431 12111 11122333 3443 4444432 468888664 3433
Q ss_pred EEEee--------ecCcEEEEEEe--c-CCC-EEEEEeCCCeEEEEECC---CC----ceeEEEeecCCcceEEEEECCC
Q 043172 386 IGTLK--------MNGTVRSLAFA--D-DGK-QLLSSGGDGQVYHWDLR---TR----TCIHRAVDEGCINGTALCTSPD 446 (564)
Q Consensus 386 ~~~~~--------~~~~V~~l~~s--p-dg~-~l~s~s~dg~V~lwD~~---~~----~~~~~~~~~~~~~i~~l~~sp~ 446 (564)
..+. ....+..+|+- | +|. ++++...+|.+..|-+. .+ +.+++|.... .+..|+....
T Consensus 142 -~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s--Q~EGCVVDDe 218 (381)
T PF02333_consen 142 -TDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGS--QPEGCVVDDE 218 (381)
T ss_dssp -EE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS---EEEEEEETT
T ss_pred -eEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCC--cceEEEEecc
Confidence 2222 11246778874 3 344 56667788988888774 23 3456665444 5677888888
Q ss_pred CCEEEEEeCCCcEEEEeCCcccCCcceeeEEcc--ccccceeEEEEcC--CC-cEEEEEecCCCCeEEEEEcCC
Q 043172 447 GTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIE--NLTTKVDFMKFNN--DA-QILAICSTMKKNSLKLIHIPS 515 (564)
Q Consensus 447 g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~--~~~~~I~~l~fsp--dg-~~La~~s~~~d~~I~lwdl~s 515 (564)
..+|+.|-++--|.-|+........+..+.... .+...|-.|++-. ++ .||+++|.. +++..||+...
T Consensus 219 ~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG-~~sf~Vy~r~~ 291 (381)
T PF02333_consen 219 TGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQG-DNSFAVYDREG 291 (381)
T ss_dssp TTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGG-GTEEEEEESST
T ss_pred cCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCC-CCeEEEEecCC
Confidence 889999999988888887644223334444433 3456777777753 44 466666664 88999999864
No 447
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=95.35 E-value=3.6 Score=42.67 Aligned_cols=85 Identities=19% Similarity=0.193 Sum_probs=41.8
Q ss_pred CCeEEEEECCC--CceeeeccccccCCcceEEEEEcCCCCEEEEEeCC-----------CeEEEEECCCCcEEEEeee-c
Q 043172 327 RKFFYSLDLVK--AKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNE-----------GYILLVSSKTKELIGTLKM-N 392 (564)
Q Consensus 327 dg~i~iwdl~~--~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-----------g~I~lwd~~t~~~~~~~~~-~ 392 (564)
...+.++|+.. .....+..+..... .......-++.+.++|+.. ..+..||..+.++...-.. .
T Consensus 49 ~~~~~~~d~~~~~~~W~~l~~~p~~~r--~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p 126 (376)
T PRK14131 49 GTSWYKLDLNAPSKGWTKIAAFPGGPR--EQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSP 126 (376)
T ss_pred CCeEEEEECCCCCCCeEECCcCCCCCc--ccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCC
Confidence 34567777753 33433333322111 1112223356677777653 2477889888877654321 1
Q ss_pred CcEE-EEEEe-cCCCEEEEEeCC
Q 043172 393 GTVR-SLAFA-DDGKQLLSSGGD 413 (564)
Q Consensus 393 ~~V~-~l~~s-pdg~~l~s~s~d 413 (564)
.... ..+.. -++++.+.|+.+
T Consensus 127 ~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 127 VGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred CcccceEEEEeeCCEEEEECCCC
Confidence 1111 11222 367777777753
No 448
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=95.22 E-value=3.2 Score=40.11 Aligned_cols=245 Identities=9% Similarity=0.014 Sum_probs=145.7
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCce
Q 043172 261 STGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKA 340 (564)
Q Consensus 261 h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~ 340 (564)
..+.-..|+-.|||..-+++...+.|--.|.. +.+..+.--+....-+.+..-|||..-++-+.. -|.-.|-++...
T Consensus 60 ~G~ap~dvapapdG~VWft~qg~gaiGhLdP~--tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~ev 136 (353)
T COG4257 60 NGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPA--TGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEV 136 (353)
T ss_pred CCCCccccccCCCCceEEecCccccceecCCC--CCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccce
Confidence 34556778888999888888766666544433 333333333444556677788888777664433 566667767666
Q ss_pred eeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee--ecCcEEEEEEecCCCEEEEEeCCCeEEE
Q 043172 341 DKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK--MNGTVRSLAFADDGKQLLSSGGDGQVYH 418 (564)
Q Consensus 341 ~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~--~~~~V~~l~~spdg~~l~s~s~dg~V~l 418 (564)
....-...+....+....|.+.|++-+++.. |.---.|..+ ..+.++. .....+.||..|+|..-++.-.+..|-.
T Consensus 137 t~f~lp~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa~-~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiar 214 (353)
T COG4257 137 TRFPLPLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDPAR-NVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIAR 214 (353)
T ss_pred EEeecccccCCCcccceeeCCCccEEEeecc-ccceecCccc-CceeeeccCCCCCCcceEECCCCcEEEEeccccceEE
Confidence 5433233344456888999999998888753 3222223222 2233333 3456788999999998887777778888
Q ss_pred EECCCCceeEEEeecC-CcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEE
Q 043172 419 WDLRTRTCIHRAVDEG-CINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQIL 497 (564)
Q Consensus 419 wD~~~~~~~~~~~~~~-~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~L 497 (564)
.|..++.....-.... ......+-.+|.|+.-++-...+.+..||-.... -.-..+.+....-.++.....++.-
T Consensus 215 idp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s----W~eypLPgs~arpys~rVD~~grVW 290 (353)
T COG4257 215 IDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS----WIEYPLPGSKARPYSMRVDRHGRVW 290 (353)
T ss_pred cccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc----ceeeeCCCCCCCcceeeeccCCcEE
Confidence 8887764322211111 2233455567888877787778888888876531 1122333444445555555555544
Q ss_pred EEEecCCCCeEEEEEcCCC
Q 043172 498 AICSTMKKNSLKLIHIPSY 516 (564)
Q Consensus 498 a~~s~~~d~~I~lwdl~s~ 516 (564)
.+-.. -|.|.-+|-.+.
T Consensus 291 ~sea~--agai~rfdpeta 307 (353)
T COG4257 291 LSEAD--AGAIGRFDPETA 307 (353)
T ss_pred eeccc--cCceeecCcccc
Confidence 42222 466666666543
No 449
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=95.17 E-value=0.83 Score=46.30 Aligned_cols=138 Identities=12% Similarity=0.124 Sum_probs=69.7
Q ss_pred CCCEEEEEeCCC-----cEEEEEecCCCCc-eeEEEEeCCcCe--EEEEEeeCCCEEEEEeC-----CCeEEEEECCCCc
Q 043172 273 NAQLLLVAGLDR-----RLRFFQIDGKRNT-KIQSIFLEDCPV--RKASFLPDGSQAIIAGR-----RKFFYSLDLVKAK 339 (564)
Q Consensus 273 dg~~l~s~s~dg-----~I~lwd~~~~~~~-~~~~~~~~~~~I--~~l~fspdg~~l~s~~~-----dg~i~iwdl~~~~ 339 (564)
++.+++.||.++ .+..|++...... ....+..-..+. .+++. -+++..+.|+. ...+..||+.+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 456777777643 4555666543321 011111111111 12222 25555666653 2468899999888
Q ss_pred eeeeccccccCCcceEEEEEcCCCCEEEEEeCCC----eEEEEECCCCcEEEEeee---cCcE---EEEE-EecCCCEEE
Q 043172 340 ADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEG----YILLVSSKTKELIGTLKM---NGTV---RSLA-FADDGKQLL 408 (564)
Q Consensus 340 ~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg----~I~lwd~~t~~~~~~~~~---~~~V---~~l~-~spdg~~l~ 408 (564)
...+..+..... ....+...++++.++|+.++ .+.+||+.+.++...-.. ..+. .... ...++.+++
T Consensus 151 W~~~~~~p~~~r--~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv 228 (323)
T TIGR03548 151 WFELPDFPGEPR--VQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLC 228 (323)
T ss_pred eeECCCCCCCCC--CcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEE
Confidence 766544432111 11222334677778887653 356899988877543221 1111 1111 223567777
Q ss_pred EEeCC
Q 043172 409 SSGGD 413 (564)
Q Consensus 409 s~s~d 413 (564)
.|+.+
T Consensus 229 ~GG~~ 233 (323)
T TIGR03548 229 IGGFN 233 (323)
T ss_pred ECCcC
Confidence 77765
No 450
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=95.15 E-value=4.4 Score=41.39 Aligned_cols=84 Identities=17% Similarity=0.194 Sum_probs=42.3
Q ss_pred CeEEEEECC--CCceeeeccccccCCcceEEEEEcCCCCEEEEEeCC-----------CeEEEEECCCCcEEEEee-ecC
Q 043172 328 KFFYSLDLV--KAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNE-----------GYILLVSSKTKELIGTLK-MNG 393 (564)
Q Consensus 328 g~i~iwdl~--~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-----------g~I~lwd~~t~~~~~~~~-~~~ 393 (564)
..+.++|+. +.+...+..+..... .......-++.+.++|+.. ..+..||..+..+..... ...
T Consensus 29 ~~~~~~d~~~~~~~W~~l~~~p~~~R--~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~ 106 (346)
T TIGR03547 29 TSWYKLDLKKPSKGWQKIADFPGGPR--NQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPV 106 (346)
T ss_pred CeeEEEECCCCCCCceECCCCCCCCc--ccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCC
Confidence 457777763 334444433332111 1112223357777777753 257788988887765431 111
Q ss_pred cEEEE-EE-ecCCCEEEEEeCC
Q 043172 394 TVRSL-AF-ADDGKQLLSSGGD 413 (564)
Q Consensus 394 ~V~~l-~~-spdg~~l~s~s~d 413 (564)
...+. +. .-++++.+.|+.+
T Consensus 107 ~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 107 GLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred cccceeEEEEeCCEEEEEcCcC
Confidence 11111 11 2367777777754
No 451
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.09 E-value=0.86 Score=49.78 Aligned_cols=116 Identities=17% Similarity=0.132 Sum_probs=74.3
Q ss_pred cEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEEC--CCCCEEEEEeCCCcEEEEeCCcc----
Q 043172 394 TVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTS--PDGTFFAAGSDSGIVNVYNRQEF---- 467 (564)
Q Consensus 394 ~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~s--p~g~~lasgs~dg~V~iwd~~~~---- 467 (564)
.++-+.-+.-++..++-+....+.|||.+.+.....-.......|..+.|. |+|+.+++.+....|.+|.-...
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 344444455555555544556899999998875544333334467777775 78888888788888988865321
Q ss_pred cCCcceeeEEc--cccc-cceeEEEEcCCCcEEEEEecCCCCeEEEEEc
Q 043172 468 LGGKRKPIKTI--ENLT-TKVDFMKFNNDAQILAICSTMKKNSLKLIHI 513 (564)
Q Consensus 468 ~~~~~~~~~~~--~~~~-~~I~~l~fspdg~~La~~s~~~d~~I~lwdl 513 (564)
......+++.+ ..++ .+|....|.++|.+++ |+ .+.+.|++-
T Consensus 111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV-~s---GNqlfv~dk 155 (631)
T PF12234_consen 111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVV-GS---GNQLFVFDK 155 (631)
T ss_pred CCcccceeEEEEeecCCCCCccceeEecCCeEEE-Ee---CCEEEEECC
Confidence 12334555554 2333 6899999999997655 44 367888864
No 452
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.08 E-value=0.59 Score=47.94 Aligned_cols=122 Identities=16% Similarity=0.252 Sum_probs=84.9
Q ss_pred ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEee---cCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcc
Q 043172 391 MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVD---EGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEF 467 (564)
Q Consensus 391 ~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~---~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~ 467 (564)
..|+|.++.|++|.+.|++--.+.+|.+++....+....... .+...|...+|+.+ .-+|.-+..| +.+|-....
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe 142 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE 142 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence 567999999999999999999999999999854333222211 23445888999866 5566666655 566665432
Q ss_pred cCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCce
Q 043172 468 LGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNV 518 (564)
Q Consensus 468 ~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~ 518 (564)
...++..+.|...|.-..|.++.+.++.+++-..+++.=+.+.++..
T Consensus 143 ----krslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~v 189 (657)
T KOG2377|consen 143 ----KRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGTM 189 (657)
T ss_pred ----hhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeecee
Confidence 25566667788889999999999887776653355565566655443
No 453
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.03 E-value=1 Score=41.61 Aligned_cols=178 Identities=17% Similarity=0.136 Sum_probs=97.5
Q ss_pred CCCEEEEEeCC--CeEEEEECCCCcEEEEeeec-CcEEEEEEecCCCEEE-EEeCCCeEEEEECCCCceeEEEeecCCcc
Q 043172 362 DSSVIAFVGNE--GYILLVSSKTKELIGTLKMN-GTVRSLAFADDGKQLL-SSGGDGQVYHWDLRTRTCIHRAVDEGCIN 437 (564)
Q Consensus 362 dg~~la~~~~d--g~I~lwd~~t~~~~~~~~~~-~~V~~l~~spdg~~l~-s~s~dg~V~lwD~~~~~~~~~~~~~~~~~ 437 (564)
+|.++.+.+.- ..|++||+.+++.+...... ..+..=-...-|..+. ..-.+|.-..+|..+-+++..+.-.+..
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeG- 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEG- 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcc-
Confidence 45666666653 57999999999988776533 1222111111233333 2335788899999998888887766543
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccc-cccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCC
Q 043172 438 GTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIEN-LTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSY 516 (564)
Q Consensus 438 i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~-~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~ 516 (564)
..++ .++..|+.+....++..-|..+... ..+...++.+ ....++-+.|- +|.+.|-.=. ...|-..+..+|
T Consensus 134 -WgLt--~d~~~LimsdGsatL~frdP~tfa~-~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~--t~~I~rI~p~sG 206 (262)
T COG3823 134 -WGLT--SDDKNLIMSDGSATLQFRDPKTFAE-LDTVQVTDDGVPVSKLNELEWV-DGELYANVWQ--TTRIARIDPDSG 206 (262)
T ss_pred -eeee--cCCcceEeeCCceEEEecCHHHhhh-cceEEEEECCeecccccceeee-ccEEEEeeee--ecceEEEcCCCC
Confidence 4444 3555566666666777777665410 0111112221 11222333332 4544432222 455556666666
Q ss_pred ceeccCC---------CCCCCCCCcEEEEEeCCC-CEEEEE
Q 043172 517 NVFSNWP---------PANRNLQYPRCLDFSPGG-GFMAVG 547 (564)
Q Consensus 517 ~~~~~~~---------~~~~~~~~V~~l~fspdg-~~Lasg 547 (564)
++...+. ....+....+.+++.|++ +++++|
T Consensus 207 rV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 207 RVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred cEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 6544322 222344567899999987 555555
No 454
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.03 E-value=3.5 Score=42.54 Aligned_cols=131 Identities=13% Similarity=0.096 Sum_probs=80.3
Q ss_pred EEeCCCcEEEEEecCCCCceeEEE-EeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeecccccc-CCcceEE
Q 043172 279 VAGLDRRLRFFQIDGKRNTKIQSI-FLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGR-EEKSLEF 356 (564)
Q Consensus 279 s~s~dg~I~lwd~~~~~~~~~~~~-~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~-~~~~v~~ 356 (564)
.|-..|.+.=|-+.+......-++ ....++|.++.||+|.+.|++--.+..|.+++....+.......... ....|..
T Consensus 38 favrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlG 117 (657)
T KOG2377|consen 38 FAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILG 117 (657)
T ss_pred EEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEE
Confidence 333456667777665432222222 23467999999999999999999999999999854433222111111 1135889
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCC-cEEEEee-ecCcEEEEEEecCCCEEEEEe
Q 043172 357 FEVSPDSSVIAFVGNEGYILLVSSKTK-ELIGTLK-MNGTVRSLAFADDGKQLLSSG 411 (564)
Q Consensus 357 ~~~spdg~~la~~~~dg~I~lwd~~t~-~~~~~~~-~~~~V~~l~~spdg~~l~s~s 411 (564)
+.|+.+ .-+|.....| +-+|-.... ..++..+ ++..|.-..|.++.+.++.++
T Consensus 118 F~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 118 FCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred EEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 999876 5666666555 455544322 1222222 677888888998877655443
No 455
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=95.01 E-value=4.8 Score=41.11 Aligned_cols=96 Identities=18% Similarity=0.040 Sum_probs=52.5
Q ss_pred eCCCEEEEEeCC-----------CeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCC------------
Q 043172 316 PDGSQAIIAGRR-----------KFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNE------------ 372 (564)
Q Consensus 316 pdg~~l~s~~~d-----------g~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d------------ 372 (564)
-++...++||.. ..+..||..+.....+........ .-.+....-++++.++|+.+
T Consensus 62 ~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~-~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~ 140 (346)
T TIGR03547 62 IDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGL-LGASGFSLHNGQAYFTGGVNKNIFDGYFADLS 140 (346)
T ss_pred ECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcc-cceeEEEEeCCEEEEEcCcChHHHHHHHhhHh
Confidence 356666666642 247889998887765432111111 01111113467788888754
Q ss_pred ---------------------------CeEEEEECCCCcEEEEeeec--CcEEEEEEecCCCEEEEEeC
Q 043172 373 ---------------------------GYILLVSSKTKELIGTLKMN--GTVRSLAFADDGKQLLSSGG 412 (564)
Q Consensus 373 ---------------------------g~I~lwd~~t~~~~~~~~~~--~~V~~l~~spdg~~l~s~s~ 412 (564)
..|.+||..+.++...-... .........-++++++.|+.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~ 209 (346)
T TIGR03547 141 AADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGE 209 (346)
T ss_pred hcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeee
Confidence 46889999888876543322 11112222336677777764
No 456
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=94.99 E-value=3.7 Score=39.67 Aligned_cols=205 Identities=15% Similarity=0.086 Sum_probs=124.5
Q ss_pred CeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE
Q 043172 308 PVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIG 387 (564)
Q Consensus 308 ~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~ 387 (564)
.-+.++-.|||..-+++...+.|--.|..+|+.....--.+. .-..+.+-|+|..-++-+.. .|.-+|-++.+...
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga---~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~ 138 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGA---SPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTR 138 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCC---CCceEEECCCCCeeEecCcc-eeEEecCcccceEE
Confidence 446677888998888888888888899999987654322222 35678889998876654433 56667766655432
Q ss_pred E-e--e-ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEe
Q 043172 388 T-L--K-MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYN 463 (564)
Q Consensus 388 ~-~--~-~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd 463 (564)
- + . .........|.+.|++-+++.. |.---.|..+ ..+..|....+.....||..|+|..-++.-....|-..|
T Consensus 139 f~lp~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa~-~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiarid 216 (353)
T COG4257 139 FPLPLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDPAR-NVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARID 216 (353)
T ss_pred eecccccCCCcccceeeCCCccEEEeecc-ccceecCccc-CceeeeccCCCCCCcceEECCCCcEEEEeccccceEEcc
Confidence 1 1 1 3457888999999998877752 3222233332 234444444444556788899998666655555666666
Q ss_pred CCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCC
Q 043172 464 RQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPP 524 (564)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~ 524 (564)
.... ....+-.-.........+--+|.|+.-++... .+.+..++-.... ...|+.
T Consensus 217 p~~~---~aev~p~P~~~~~gsRriwsdpig~~wittwg--~g~l~rfdPs~~s-W~eypL 271 (353)
T COG4257 217 PFAG---HAEVVPQPNALKAGSRRIWSDPIGRAWITTWG--TGSLHRFDPSVTS-WIEYPL 271 (353)
T ss_pred cccC---CcceecCCCcccccccccccCccCcEEEeccC--CceeeEeCccccc-ceeeeC
Confidence 5543 11112111222333445555677777776555 7788888765433 344433
No 457
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=94.80 E-value=5.3 Score=40.54 Aligned_cols=147 Identities=18% Similarity=0.227 Sum_probs=87.3
Q ss_pred cceEEEEEcCCCCEEEEEeCCCe------EEEEECCC--C--cEEE-----Eee-ecC--------cEEEEEEecCCCEE
Q 043172 352 KSLEFFEVSPDSSVIAFVGNEGY------ILLVSSKT--K--ELIG-----TLK-MNG--------TVRSLAFADDGKQL 407 (564)
Q Consensus 352 ~~v~~~~~spdg~~la~~~~dg~------I~lwd~~t--~--~~~~-----~~~-~~~--------~V~~l~~spdg~~l 407 (564)
..++.+.+.|++..+++.+.+|. ++.+.+.. + ..+. .+. ..+ ..-+|++.++|.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 35778889876666666677777 66665543 1 1111 111 112 23478887788877
Q ss_pred EEEeCC------CeEEEEECCCCceeEEEee--------------cCCcceEEEEECCCCCEEEEEeC-----CC--c--
Q 043172 408 LSSGGD------GQVYHWDLRTRTCIHRAVD--------------EGCINGTALCTSPDGTFFAAGSD-----SG--I-- 458 (564)
Q Consensus 408 ~s~s~d------g~V~lwD~~~~~~~~~~~~--------------~~~~~i~~l~~sp~g~~lasgs~-----dg--~-- 458 (564)
++.-.+ ..|+.++.. ++.+..+.. ......-+++++|+|+.|+++.+ ++ .
T Consensus 100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~ 178 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP 178 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc
Confidence 776666 788888876 665544421 12335679999999996666543 22 1
Q ss_pred -----EEEEeCCcccCC--cceeeEEccc-----cccceeEEEEcCCCcEEEE
Q 043172 459 -----VNVYNRQEFLGG--KRKPIKTIEN-----LTTKVDFMKFNNDAQILAI 499 (564)
Q Consensus 459 -----V~iwd~~~~~~~--~~~~~~~~~~-----~~~~I~~l~fspdg~~La~ 499 (564)
++|+........ .....+.+.. ....|+.+.+-+++++|+.
T Consensus 179 ~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 179 DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 455544432101 1122333332 4577899999999998775
No 458
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=94.75 E-value=2.2 Score=43.30 Aligned_cols=148 Identities=20% Similarity=0.223 Sum_probs=87.3
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCCc------EEEEEecCCCC--ce-----eEEEEeCCc--------CeEEEEEeeCCC
Q 043172 261 STGPINSVQFHRNAQLLLVAGLDRR------LRFFQIDGKRN--TK-----IQSIFLEDC--------PVRKASFLPDGS 319 (564)
Q Consensus 261 h~~~V~~l~fspdg~~l~s~s~dg~------I~lwd~~~~~~--~~-----~~~~~~~~~--------~I~~l~fspdg~ 319 (564)
.-+.++.|.+.|++..+++.+.+|. +..+++..... .. ...+....+ -.-++++.++|.
T Consensus 18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 4578899999976666777777777 66666553111 01 111222222 233788877888
Q ss_pred EEEEEeCC------CeEEEEECCCCceeeecccc------------ccCCcceEEEEEcCCCCEEEEEeCC-----C---
Q 043172 320 QAIIAGRR------KFFYSLDLVKAKADKIGPLV------------GREEKSLEFFEVSPDSSVIAFVGNE-----G--- 373 (564)
Q Consensus 320 ~l~s~~~d------g~i~iwdl~~~~~~~~~~~~------------~~~~~~v~~~~~spdg~~la~~~~d-----g--- 373 (564)
++++.-.. ..|+.++.. |+......++ ......+..++++|+|+.|+++... +
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence 88777666 788888877 5442221111 1233579999999999966665432 1
Q ss_pred --------eEEEEECCC-CcEEEEee----------ecCcEEEEEEecCCCEEEE
Q 043172 374 --------YILLVSSKT-KELIGTLK----------MNGTVRSLAFADDGKQLLS 409 (564)
Q Consensus 374 --------~I~lwd~~t-~~~~~~~~----------~~~~V~~l~~spdg~~l~s 409 (564)
.|..||..+ +.....+. ....|..+.+.+++++|+.
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 234455544 32222222 1356788888888875553
No 459
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.60 E-value=2.3 Score=46.53 Aligned_cols=165 Identities=12% Similarity=0.139 Sum_probs=87.6
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEE--EeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCce
Q 043172 263 GPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSI--FLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKA 340 (564)
Q Consensus 263 ~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~--~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~ 340 (564)
+.+-.+.|+.+.. |++...+|++.+|++.+...... ++ ......|..+.|..+|=.+++.+ +..+.+-+......
T Consensus 84 ~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~ge~ie~~-svg~e~~~~~I~ec~~f~~GVavlt~~-g~v~~i~~~~~~~~ 160 (829)
T KOG2280|consen 84 GELIGMGWSDDEE-LICVQKDGTVHVYGLLGEFIESN-SVGFESQMSDIVECRFFHNGVAVLTVS-GQVILINGVEEPKL 160 (829)
T ss_pred CCeeeecccCCce-EEEEeccceEEEeecchhhhccc-ccccccccCceeEEEEecCceEEEecC-CcEEEEcCCCcchh
Confidence 3788999997765 45556899999999875432221 12 22233466666666663333332 23333444443333
Q ss_pred eeeccccccCCcceEEEEEcCCCC---EEEEEe-CCC-eEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEEeCCCe
Q 043172 341 DKIGPLVGREEKSLEFFEVSPDSS---VIAFVG-NEG-YILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSGGDGQ 415 (564)
Q Consensus 341 ~~~~~~~~~~~~~v~~~~~spdg~---~la~~~-~dg-~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s~dg~ 415 (564)
.....+++... ...|....+++. .++-.. ..+ .+..-+....+........+.+..+..+|+.++|+--...|.
T Consensus 161 ~~~~diP~~~~-~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~ 239 (829)
T KOG2280|consen 161 RKMPDIPYNEL-PKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGK 239 (829)
T ss_pred hhCCCCCCccC-CCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCc
Confidence 33333333332 112333333321 111111 000 111111122222221123467888999999999999999999
Q ss_pred EEEEECCCCceeEEEe
Q 043172 416 VYHWDLRTRTCIHRAV 431 (564)
Q Consensus 416 V~lwD~~~~~~~~~~~ 431 (564)
|++-++...++...+.
T Consensus 240 i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 240 IWVVSIDLSQILCEFN 255 (829)
T ss_pred EEEEecchhhhhhccC
Confidence 9999888777766555
No 460
>PRK13613 lipoprotein LpqB; Provisional
Probab=94.45 E-value=9.6 Score=41.98 Aligned_cols=194 Identities=12% Similarity=0.083 Sum_probs=103.7
Q ss_pred ceEEEEEcCCCCEEEEEeCCC-eEEEEECCCCcE----EEEeeecCcEEEEEEecCCCEEEEEeC--CC--eEEEEECCC
Q 043172 353 SLEFFEVSPDSSVIAFVGNEG-YILLVSSKTKEL----IGTLKMNGTVRSLAFADDGKQLLSSGG--DG--QVYHWDLRT 423 (564)
Q Consensus 353 ~v~~~~~spdg~~la~~~~dg-~I~lwd~~t~~~----~~~~~~~~~V~~l~~spdg~~l~s~s~--dg--~V~lwD~~~ 423 (564)
.+.+.+.++++..+|....++ .+++..+..+.. .........++.-.|.++| .+.+... ++ .+++..- .
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~~~~Lt~PS~d~~g-~vWtvd~~~~~~~vl~v~~~-~ 441 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTADGRLTSPSWDGRG-DLWVVDRDPADPRLLWLLQG-D 441 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeeccCcccCCcCcCCC-CEEEecCCCCCceEEEEEcC-C
Confidence 577899999999998887665 455544433322 1112223446667777776 4555422 22 2555543 3
Q ss_pred CceeEEEee--cCCcceEEEEECCCCCEEEEEeC---CCcEEEEeCCcccCCcceee---EEccccccceeEEEEcCCCc
Q 043172 424 RTCIHRAVD--EGCINGTALCTSPDGTFFAAGSD---SGIVNVYNRQEFLGGKRKPI---KTIENLTTKVDFMKFNNDAQ 495 (564)
Q Consensus 424 ~~~~~~~~~--~~~~~i~~l~~sp~g~~lasgs~---dg~V~iwd~~~~~~~~~~~~---~~~~~~~~~I~~l~fspdg~ 495 (564)
+.... ... -....|+.+.+|++|-.+|.-.. .+.|.|--+.....+. ..+ ..+......+.+++|..++.
T Consensus 442 G~~~~-V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~-~~l~~~~~l~~~l~~v~~~~W~~~~s 519 (599)
T PRK13613 442 GEPVE-VRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAV-VSVEEFRSLAPELEDVTDMSWAGDSQ 519 (599)
T ss_pred CcEEE-eeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCc-EEeeccEEeccCCCccceeEEcCCCE
Confidence 44321 111 11236899999999987665443 3556555443321111 111 11211233589999999999
Q ss_pred EEEEEecC-CCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCC-EEEEEcCCCeE
Q 043172 496 ILAICSTM-KKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGG-FMAVGNAAGKV 553 (564)
Q Consensus 496 ~La~~s~~-~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~-~Lasgs~dG~V 553 (564)
+++.+... .+..+++..+.....-.. .......+.+++-..+.+ .|+.+..++.|
T Consensus 520 L~Vlg~~~~~~~~v~~v~vdG~~~~~~---~~~~v~~~~~ia~~~~~~~~~v~~~~~~~v 576 (599)
T PRK13613 520 LVVLGREEGGVQQARYVQVDGSTPPAS---APAAVTGVESITASEDERLPLVAGTSEDGI 576 (599)
T ss_pred EEEEeccCCCCcceEEEecCCcCcccc---cccCCCCeeEEEecCCCCceEEEEecCCCe
Confidence 87766332 134455555543222110 112335567777777666 55553555555
No 461
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=94.31 E-value=7.6 Score=40.25 Aligned_cols=93 Identities=15% Similarity=0.075 Sum_probs=51.0
Q ss_pred CCCEEEEEeCC-----------CeEEEEECCCCceeeeccccccCCcceEEEEEc-CCCCEEEEEeCC------------
Q 043172 317 DGSQAIIAGRR-----------KFFYSLDLVKAKADKIGPLVGREEKSLEFFEVS-PDSSVIAFVGNE------------ 372 (564)
Q Consensus 317 dg~~l~s~~~d-----------g~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~s-pdg~~la~~~~d------------ 372 (564)
++...+.||.. ..+..||..+.+...+....... .....+.. -++++.++|+.+
T Consensus 84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~--~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~ 161 (376)
T PRK14131 84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVG--LAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLA 161 (376)
T ss_pred CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCc--ccceEEEEeeCCEEEEECCCCHHHHHHHHhhhh
Confidence 55566666643 24788999888766543211111 11112222 467777887754
Q ss_pred ---------------------------CeEEEEECCCCcEEEEeeecC-c--EEEEEEecCCCEEEEEeC
Q 043172 373 ---------------------------GYILLVSSKTKELIGTLKMNG-T--VRSLAFADDGKQLLSSGG 412 (564)
Q Consensus 373 ---------------------------g~I~lwd~~t~~~~~~~~~~~-~--V~~l~~spdg~~l~s~s~ 412 (564)
..+.+||..+.++...-.... . -.++... ++++++.|+.
T Consensus 162 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~-~~~iYv~GG~ 230 (376)
T PRK14131 162 AAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIK-GNKLWLINGE 230 (376)
T ss_pred hcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEE-CCEEEEEeee
Confidence 358899999888865332221 1 1223322 5666666663
No 462
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=94.14 E-value=13 Score=42.44 Aligned_cols=160 Identities=12% Similarity=0.104 Sum_probs=93.8
Q ss_pred eCCcCeEEEEEe---e----CCCEEEEEeCCCeEEEEECCCCce-------------eeeccccc--cCCcceEEEEEcC
Q 043172 304 LEDCPVRKASFL---P----DGSQAIIAGRRKFFYSLDLVKAKA-------------DKIGPLVG--REEKSLEFFEVSP 361 (564)
Q Consensus 304 ~~~~~I~~l~fs---p----dg~~l~s~~~dg~i~iwdl~~~~~-------------~~~~~~~~--~~~~~v~~~~~sp 361 (564)
....||..|+|. . ..++|++ -....++|+...-.+. ..+..+.. ..+.+...++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~V-rt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAV-RTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEE-EcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 356799999998 2 1234444 4455677776221111 01111211 1123567899998
Q ss_pred -CCCEEEEEeCCCeEEEEECCCC------cEEEEeeecCc----------EEEEEEecCCCEEEEEeCCCeEEEEECCCC
Q 043172 362 -DSSVIAFVGNEGYILLVSSKTK------ELIGTLKMNGT----------VRSLAFADDGKQLLSSGGDGQVYHWDLRTR 424 (564)
Q Consensus 362 -dg~~la~~~~dg~I~lwd~~t~------~~~~~~~~~~~----------V~~l~~spdg~~l~s~s~dg~V~lwD~~~~ 424 (564)
+...||+....|...||++... .+.....+.+. -..+.|.++.+.|++++. ..+.++|+.+.
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~~ 234 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFESN 234 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECCCC
Confidence 4568999999999999999211 11111112232 347889888888888876 47899999987
Q ss_pred ceeE-EEeecCCcceEEEEECCCC-CEEEEEeCCCcEEEEeCCc
Q 043172 425 TCIH-RAVDEGCINGTALCTSPDG-TFFAAGSDSGIVNVYNRQE 466 (564)
Q Consensus 425 ~~~~-~~~~~~~~~i~~l~~sp~g-~~lasgs~dg~V~iwd~~~ 466 (564)
.... .........|..+.-+|.. .++++-+ ...|...++..
T Consensus 235 ~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~ 277 (765)
T PF10214_consen 235 WQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKS 277 (765)
T ss_pred CccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccC
Confidence 6543 2222334467788877762 2333332 24677777765
No 463
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.13 E-value=2.7 Score=46.57 Aligned_cols=113 Identities=15% Similarity=0.179 Sum_probs=73.8
Q ss_pred ceEEEEEcC--CCCEEEEEeCCCeEEEEECCC-------C-------------cEEEEeeecCcEEEEEEe--cCCCEEE
Q 043172 353 SLEFFEVSP--DSSVIAFVGNEGYILLVSSKT-------K-------------ELIGTLKMNGTVRSLAFA--DDGKQLL 408 (564)
Q Consensus 353 ~v~~~~~sp--dg~~la~~~~dg~I~lwd~~t-------~-------------~~~~~~~~~~~V~~l~~s--pdg~~l~ 408 (564)
.|+.+.+.. ....|+++..+|.|.+|.+.+ . ++...+.....+++++++ ...++||
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIA 181 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIA 181 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEE
Confidence 456665544 345788899999999997621 0 112233356789999998 7778888
Q ss_pred EEeCCCeEEEEECCCC--ceeEEEeecCCcceEEEEECCCC-----C-EEEEEeCCCcEEEEeCC
Q 043172 409 SSGGDGQVYHWDLRTR--TCIHRAVDEGCINGTALCTSPDG-----T-FFAAGSDSGIVNVYNRQ 465 (564)
Q Consensus 409 s~s~dg~V~lwD~~~~--~~~~~~~~~~~~~i~~l~~sp~g-----~-~lasgs~dg~V~iwd~~ 465 (564)
+++....|.||-.... +....-...+...|.+|+|-++. . +|++++-.|.+.+|++.
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 8877777777765432 21111111233456788886543 2 78888999999998883
No 464
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=93.99 E-value=12 Score=41.25 Aligned_cols=162 Identities=15% Similarity=0.174 Sum_probs=85.5
Q ss_pred eeecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCcee--EEEeecCCcceEEEEECC------CCCEEEEEeC-C---
Q 043172 389 LKMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCI--HRAVDEGCINGTALCTSP------DGTFFAAGSD-S--- 456 (564)
Q Consensus 389 ~~~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~--~~~~~~~~~~i~~l~~sp------~g~~lasgs~-d--- 456 (564)
++....|.++.|.++++.+++...+|.|.+||...+... ......+...+.--+|-+ ...++++-+. .
T Consensus 126 ~kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k 205 (670)
T PF10395_consen 126 LKLDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSK 205 (670)
T ss_pred EEcccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCc
Confidence 346788999999999999999999999999999322211 111111111110001111 1234444443 2
Q ss_pred CcEEEEeCCcccCCcceeeEEcc---ccccceeEEEEcC-CCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCC--CC-
Q 043172 457 GIVNVYNRQEFLGGKRKPIKTIE---NLTTKVDFMKFNN-DAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANR--NL- 529 (564)
Q Consensus 457 g~V~iwd~~~~~~~~~~~~~~~~---~~~~~I~~l~fsp-dg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~--~~- 529 (564)
-..+++.+... ..++..+. .+........|+- +|.+... . ++.|.+|.+++.+....+..... ..
T Consensus 206 ~~ykL~~l~~~----~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~--~~~i~~ysip~f~~~~tI~l~~ii~~~~ 277 (670)
T PF10395_consen 206 LSYKLISLSNE----SSSIFELSSTILENFGLEDSKFCYQFGKLYQL--S--KKTISSYSIPNFQIQKTISLPSIIDKES 277 (670)
T ss_pred EEEEEEEeccC----CcceEEeehheeccCCcccceEEEeCCEEEEE--e--CCEEEEEEcCCceEEEEEEechhhcccc
Confidence 24667777111 12222222 2222233333333 5655444 3 68999999999887665543311 11
Q ss_pred CCcEEEEEeCCCCEEEEEcCCCeEEEEEcCC
Q 043172 530 QYPRCLDFSPGGGFMAVGNAAGKVFLYKLNH 560 (564)
Q Consensus 530 ~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~ 560 (564)
..+.++. .|....+..+ .+++|++.++.+
T Consensus 278 ~~~vSl~-~~s~nRvLLs-~~nkIyLld~~~ 306 (670)
T PF10395_consen 278 DDLVSLK-PPSPNRVLLS-VNNKIYLLDLKF 306 (670)
T ss_pred ccceEee-cCCCCeEEEE-cCCEEEEEeehh
Confidence 1232332 1233334333 356899999865
No 465
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=93.79 E-value=11 Score=40.38 Aligned_cols=134 Identities=13% Similarity=0.141 Sum_probs=70.7
Q ss_pred CCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeeecCc----EEEEEEe
Q 043172 326 RRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLKMNGT----VRSLAFA 401 (564)
Q Consensus 326 ~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~~~~~----V~~l~~s 401 (564)
..+..+++|... .+............. +...++|.+++..+ ..+..+|+- |+.+......+. -.++.+.
T Consensus 126 ~~~~~~~iD~~G-~Vrw~~~~~~~~~~~---~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l 198 (477)
T PF05935_consen 126 SSSYTYLIDNNG-DVRWYLPLDSGSDNS---FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDEL 198 (477)
T ss_dssp BEEEEEEEETTS--EEEEE-GGGT--SS---EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-
T ss_pred CCceEEEECCCc-cEEEEEccCccccce---eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEEC
Confidence 456677777653 333222222222111 66788998887665 888999974 666666664442 3677888
Q ss_pred cCCCEEEEEeC-------------CCeEEEEECCCCceeEEEeec------C--------------------CcceEEEE
Q 043172 402 DDGKQLLSSGG-------------DGQVYHWDLRTRTCIHRAVDE------G--------------------CINGTALC 442 (564)
Q Consensus 402 pdg~~l~s~s~-------------dg~V~lwD~~~~~~~~~~~~~------~--------------------~~~i~~l~ 442 (564)
|+|++|+.+.. .-.|..+| .+|+.+..|... . =..+.++.
T Consensus 199 ~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~ 277 (477)
T PF05935_consen 199 PNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSID 277 (477)
T ss_dssp TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEE
T ss_pred CCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccE
Confidence 99999888871 12466677 777776655421 0 02467888
Q ss_pred ECC-CCCEEEEEeCCCcEEEEeCCcc
Q 043172 443 TSP-DGTFFAAGSDSGIVNVYNRQEF 467 (564)
Q Consensus 443 ~sp-~g~~lasgs~dg~V~iwd~~~~ 467 (564)
+.+ ++.+|+++-.-..|...|.+++
T Consensus 278 yd~~dd~iivSsR~~s~V~~Id~~t~ 303 (477)
T PF05935_consen 278 YDPSDDSIIVSSRHQSAVIKIDYRTG 303 (477)
T ss_dssp EETTTTEEEEEETTT-EEEEEE-TTS
T ss_pred EeCCCCeEEEEcCcceEEEEEECCCC
Confidence 888 5555555555557777786554
No 466
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=93.79 E-value=5.9 Score=37.08 Aligned_cols=144 Identities=10% Similarity=0.110 Sum_probs=81.2
Q ss_pred CEEEEEeCCCeEEEEECC--CCcEEEEeeecCcEEEEEEecCCCEEEEEeCC---C---eEEEE---ECC--CCceeE-E
Q 043172 364 SVIAFVGNEGYILLVSSK--TKELIGTLKMNGTVRSLAFADDGKQLLSSGGD---G---QVYHW---DLR--TRTCIH-R 429 (564)
Q Consensus 364 ~~la~~~~dg~I~lwd~~--t~~~~~~~~~~~~V~~l~~spdg~~l~s~s~d---g---~V~lw---D~~--~~~~~~-~ 429 (564)
..|+.+...+.|.+|++. ..+.+..+..-+.|..+.++..|.+|++--.+ . .+|+| ... ....+. +
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vR 108 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVR 108 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEE
Confidence 455555667889999988 45666777767899999999999999987432 2 45554 222 111111 1
Q ss_pred Eee--------------------cCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCc-ceeeEEcc----cc--c
Q 043172 430 AVD--------------------EGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGK-RKPIKTIE----NL--T 482 (564)
Q Consensus 430 ~~~--------------------~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~-~~~~~~~~----~~--~ 482 (564)
+.+ +-.....+++..|-..-|++|+.+ .+.||.+....... .-.+--+. .| .
T Consensus 109 iaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~-~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~~ 187 (215)
T PF14761_consen 109 IAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGN-KLVLFTLKYQTIQSEKFSFLDFERSLIDHIDN 187 (215)
T ss_pred EcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCC-EEEEEEEEEEEEecccccEEechhhhhheecC
Confidence 111 112234566666654456666654 78899877531000 00011111 11 1
Q ss_pred cceeEEEEcCCCcEEEEEecCCCCeEEEEEc
Q 043172 483 TKVDFMKFNNDAQILAICSTMKKNSLKLIHI 513 (564)
Q Consensus 483 ~~I~~l~fspdg~~La~~s~~~d~~I~lwdl 513 (564)
-.+..++|. +.|+|..+ +..++++.+
T Consensus 188 ~~p~~v~ic--~~yiA~~s---~~ev~Vlkl 213 (215)
T PF14761_consen 188 FKPTQVAIC--EGYIAVMS---DLEVLVLKL 213 (215)
T ss_pred ceEEEEEEE--eeEEEEec---CCEEEEEEE
Confidence 123445554 56888877 467777765
No 467
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=93.59 E-value=0.22 Score=33.52 Aligned_cols=33 Identities=27% Similarity=0.556 Sum_probs=27.5
Q ss_pred CCcEEEEEeCCCC---EEEEEcCCCeEEEEEcC-CCC
Q 043172 530 QYPRCLDFSPGGG---FMAVGNAAGKVFLYKLN-HYH 562 (564)
Q Consensus 530 ~~V~~l~fspdg~---~Lasgs~dG~V~lw~l~-~~~ 562 (564)
+.|.++.|||... +|+.+-..|.|.|+|++ +|.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~f~ 37 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSNFM 37 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccCcc
Confidence 4588999998544 89999899999999998 554
No 468
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=93.39 E-value=14 Score=40.27 Aligned_cols=201 Identities=17% Similarity=0.148 Sum_probs=113.0
Q ss_pred ceEEEEEcCCCCEEEEEeC-----CCeEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEEeCCC-----eEEEEECC
Q 043172 353 SLEFFEVSPDSSVIAFVGN-----EGYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSGGDG-----QVYHWDLR 422 (564)
Q Consensus 353 ~v~~~~~spdg~~la~~~~-----dg~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s~dg-----~V~lwD~~ 422 (564)
.+-.+..|||++++|.+-. .-.+++-|+.+++.+... ..+...+++|.+|++.|+-...+- .|+...+.
T Consensus 130 ~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~-i~~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~h~~g 208 (682)
T COG1770 130 SLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDE-ITNTSGSFAWAADGKTLFYTRLDENHRPDKVWRHRLG 208 (682)
T ss_pred eeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchh-hcccccceEEecCCCeEEEEEEcCCCCcceEEEEecC
Confidence 4667888999998887643 246889999998875433 234567899999988777665432 24444444
Q ss_pred C--CceeEEEeecCCcceEEEEECCCCCEEEEEeC---CCcEEEEeCCcccCCcceeeEEcc-ccccceeEEEEcCCCcE
Q 043172 423 T--RTCIHRAVDEGCINGTALCTSPDGTFFAAGSD---SGIVNVYNRQEFLGGKRKPIKTIE-NLTTKVDFMKFNNDAQI 496 (564)
Q Consensus 423 ~--~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~---dg~V~iwd~~~~~~~~~~~~~~~~-~~~~~I~~l~fspdg~~ 496 (564)
+ ..-...+.........+|.-+...++|+.... .+.+++.+..... ..++.+..-. ++.- .+ ...+++
T Consensus 209 t~~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~-~~p~vv~pr~~g~eY---~~--eh~~d~ 282 (682)
T COG1770 209 TPGSSDELVYEEKDDRFFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPE-AEPKVVLPRENGVEY---SV--EHGGDR 282 (682)
T ss_pred CCCCcceEEEEcCCCcEEEEeeeccCCceEEEEcCCCcceeEEEEecCCCC-CceEEEEEcCCCcEE---ee--eecCcE
Confidence 3 11111222222222344555566777776653 3567888877641 1122222111 2211 11 123566
Q ss_pred EEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCC---eEEEEEcCC
Q 043172 497 LAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAG---KVFLYKLNH 560 (564)
Q Consensus 497 La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG---~V~lw~l~~ 560 (564)
+++-+.......+|+..+......+|.....|...+.--.|+--..+|+..-.++ .|.+++..+
T Consensus 283 f~i~sN~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~ 349 (682)
T COG1770 283 FYILSNADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEGLPRVVVRDRKT 349 (682)
T ss_pred EEEEecCCCcceEEEEccCCCChhcCeeeeccCCCceeeeeeeeccEEEEEecccCCceEEEEecCC
Confidence 6665554234677777766444456666556656566666666667777654432 466666653
No 469
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=93.27 E-value=14 Score=39.74 Aligned_cols=117 Identities=20% Similarity=0.217 Sum_probs=63.5
Q ss_pred EEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeC-------------CCeEEEE
Q 043172 312 ASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGN-------------EGYILLV 378 (564)
Q Consensus 312 l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~-------------dg~I~lw 378 (564)
+.+.++|.+++..+ ..+..+|+. |+......+.+.....-..+..-|+|++|+.+.. .-.|..+
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev 229 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEV 229 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEE
Confidence 56678888887655 788889986 4444444444411000123677899999988872 1246667
Q ss_pred ECCCCcEEEEee---e-----c--------------------CcEEEEEEecCCCEEEEEeC-CCeEEEEECCCCceeEE
Q 043172 379 SSKTKELIGTLK---M-----N--------------------GTVRSLAFADDGKQLLSSGG-DGQVYHWDLRTRTCIHR 429 (564)
Q Consensus 379 d~~t~~~~~~~~---~-----~--------------------~~V~~l~~spdg~~l~s~s~-dg~V~lwD~~~~~~~~~ 429 (564)
| .+|+.+.... | . -.++++.+.+....|++.++ -..|...|.++++....
T Consensus 230 d-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wi 308 (477)
T PF05935_consen 230 D-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWI 308 (477)
T ss_dssp --TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEE
T ss_pred C-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEE
Confidence 7 7787776643 1 0 14789999994444555555 45899999888887665
Q ss_pred Eee
Q 043172 430 AVD 432 (564)
Q Consensus 430 ~~~ 432 (564)
+-.
T Consensus 309 lg~ 311 (477)
T PF05935_consen 309 LGP 311 (477)
T ss_dssp ES-
T ss_pred eCC
Confidence 544
No 470
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=93.20 E-value=6 Score=45.00 Aligned_cols=172 Identities=12% Similarity=0.179 Sum_probs=98.9
Q ss_pred eEEEEECCCCcEEEEeeecC-----cEEEEEEecCCC--EEEEEe-----------CCCeEEEEECCC-CceeEEEeecC
Q 043172 374 YILLVSSKTKELIGTLKMNG-----TVRSLAFADDGK--QLLSSG-----------GDGQVYHWDLRT-RTCIHRAVDEG 434 (564)
Q Consensus 374 ~I~lwd~~t~~~~~~~~~~~-----~V~~l~~spdg~--~l~s~s-----------~dg~V~lwD~~~-~~~~~~~~~~~ 434 (564)
.|.++|..++..+..+.+.. .+.++.|+.... +++++. .+|.++.|++-. +..+ .+....
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~l-ellh~T 932 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKL-ELLHKT 932 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCcee-eeeecc
Confidence 47888888888777776432 466667765433 333332 234567776643 3322 233333
Q ss_pred CcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccc--cccceeEEEEcCCCcEEEEEecCCCCeEEEE-
Q 043172 435 CINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIEN--LTTKVDFMKFNNDAQILAICSTMKKNSLKLI- 511 (564)
Q Consensus 435 ~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~--~~~~I~~l~fspdg~~La~~s~~~d~~I~lw- 511 (564)
.....-.++.|...++.+|-. ..+++|++... ++++.... ....|+++.+ .+..+++|.. ...|+++
T Consensus 933 ~~~~~v~Ai~~f~~~~LagvG-~~l~~YdlG~K-----~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~--qeSV~~~~ 1002 (1205)
T KOG1898|consen 933 EIPGPVGAICPFQGRVLAGVG-RFLRLYDLGKK-----KLLRKCELKFIPNRISSIQT--YGARIVVGDI--QESVHFVR 1002 (1205)
T ss_pred CCCccceEEeccCCEEEEecc-cEEEEeeCChH-----HHHhhhhhccCceEEEEEee--cceEEEEeec--cceEEEEE
Confidence 334445666777776666544 48999999875 55554432 3456666666 4667777776 4455544
Q ss_pred -EcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q 043172 512 -HIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLN 559 (564)
Q Consensus 512 -dl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~ 559 (564)
+-...+.+ .+.... -...|+++.+-.. ..+|.+..=|.+.+-++.
T Consensus 1003 y~~~~n~l~-~fadD~-~pR~Vt~~~~lD~-~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1003 YRREDNQLI-VFADDP-VPRHVTALELLDY-DTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred EecCCCeEE-EEeCCC-ccceeeEEEEecC-CceeeccccCcEEEEECC
Confidence 43333332 222221 1245777666544 557778788888877764
No 471
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=92.98 E-value=8 Score=36.21 Aligned_cols=146 Identities=16% Similarity=0.179 Sum_probs=83.0
Q ss_pred CEEEEEeCCCeEEEEECCCC--ceeEEEeecCCcceEEEEECCCCCEEEEEeCC---C---cEEEEe-CCcccCCcceee
Q 043172 405 KQLLSSGGDGQVYHWDLRTR--TCIHRAVDEGCINGTALCTSPDGTFFAAGSDS---G---IVNVYN-RQEFLGGKRKPI 475 (564)
Q Consensus 405 ~~l~s~s~dg~V~lwD~~~~--~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~d---g---~V~iwd-~~~~~~~~~~~~ 475 (564)
..|+.+...+.|.+|++... ..+.+|..- ..+..+.++..|.||++--.+ . .+++|= .+... ....|+
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv--~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~-~~~~~v 105 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV--GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQK-EENSPV 105 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch--hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhc-ccCCcE
Confidence 34555466678999999843 334445433 367899999999999986322 2 566652 11100 000111
Q ss_pred E---------------------Ec-cccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCce-ec-----cCCCC--
Q 043172 476 K---------------------TI-ENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNV-FS-----NWPPA-- 525 (564)
Q Consensus 476 ~---------------------~~-~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~-~~-----~~~~~-- 525 (564)
. .+ .....++.+++..|-..-|++|+ ++.+.||.+..... .. .+...
T Consensus 106 ~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~---~~~l~lf~l~~~~~~~~~~~~lDFe~~l~ 182 (215)
T PF14761_consen 106 RVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC---GNKLVLFTLKYQTIQSEKFSFLDFERSLI 182 (215)
T ss_pred EEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc---CCEEEEEEEEEEEEecccccEEechhhhh
Confidence 1 11 02345677888888655566777 57999999876544 11 11100
Q ss_pred CCCC-CCcEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q 043172 526 NRNL-QYPRCLDFSPGGGFMAVGNAAGKVFLYKLN 559 (564)
Q Consensus 526 ~~~~-~~V~~l~fspdg~~Lasgs~dG~V~lw~l~ 559 (564)
..+. ..+..++|. +.|+|..+. -.++++.+.
T Consensus 183 ~~~~~~~p~~v~ic--~~yiA~~s~-~ev~Vlkl~ 214 (215)
T PF14761_consen 183 DHIDNFKPTQVAIC--EGYIAVMSD-LEVLVLKLE 214 (215)
T ss_pred heecCceEEEEEEE--eeEEEEecC-CEEEEEEEe
Confidence 0111 124455554 478887764 468888764
No 472
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.80 E-value=0.014 Score=59.93 Aligned_cols=138 Identities=15% Similarity=0.270 Sum_probs=98.9
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEE-EeCCCeEEEEECCCCceeEEEeec
Q 043172 355 EFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLS-SGGDGQVYHWDLRTRTCIHRAVDE 433 (564)
Q Consensus 355 ~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s-~s~dg~V~lwD~~~~~~~~~~~~~ 433 (564)
-...|.|.+..++.++.+..+..|| +.++.+.....++...+++|.-++..+++ +-..+.+++||+.+.... .+...
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD-~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq-qLE~g 115 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYD-KAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ-QLESG 115 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhh-hhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH-HHhcc
Confidence 3467788887788888888888898 55666666667778888999887765554 455789999999864322 12222
Q ss_pred CCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEE
Q 043172 434 GCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAI 499 (564)
Q Consensus 434 ~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~ 499 (564)
+...-.-+.|++.+..++.|...|.+.||+.... +.+-....|...++++++.+.+..+..
T Consensus 116 g~~s~sll~wsKg~~el~ig~~~gn~viynhgts-----R~iiv~Gkh~RRgtq~av~lEd~vil~ 176 (615)
T KOG2247|consen 116 GTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTS-----RRIIVMGKHQRRGTQIAVTLEDYVILC 176 (615)
T ss_pred CcchHHHHhhccCCccccccccccceEEEeccch-----hhhhhhcccccceeEEEecccceeeec
Confidence 2111123678999999999999999999998875 444444448888999999887765543
No 473
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=92.65 E-value=25 Score=41.01 Aligned_cols=177 Identities=12% Similarity=0.119 Sum_probs=89.9
Q ss_pred CCeEEEEECCCCcEEEEee--ecCcEEEEEEec-------C--CCEEEEEeC---------CCeEEEEECCC-----Cce
Q 043172 372 EGYILLVSSKTKELIGTLK--MNGTVRSLAFAD-------D--GKQLLSSGG---------DGQVYHWDLRT-----RTC 426 (564)
Q Consensus 372 dg~I~lwd~~t~~~~~~~~--~~~~V~~l~~sp-------d--g~~l~s~s~---------dg~V~lwD~~~-----~~~ 426 (564)
.+.|.+.+..+.+++..+. ....|+++...- . ..+|++|.. -|.++++|+-. +++
T Consensus 1003 ~f~i~LisP~sw~vi~~iefq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP 1082 (1366)
T KOG1896|consen 1003 QFSIQLISPESWEVIDKIEFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKP 1082 (1366)
T ss_pred cceeEEecCCccccccccccCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCCCC
Confidence 3567777777777776554 233455544421 1 246777742 38899999742 221
Q ss_pred -----eEEEe-ecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEE
Q 043172 427 -----IHRAV-DEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAIC 500 (564)
Q Consensus 427 -----~~~~~-~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~ 500 (564)
++.+. .+....|..+| .-+| +|++|. ...|.||++... ....++.-+ ..++.-.....-.++|++|
T Consensus 1083 ~t~~KlKel~~eE~KGtVsavc-eV~G-~l~~~~-GqKI~v~~l~r~--~~ligVaFi---D~~~yv~s~~~vknlIl~g 1154 (1366)
T KOG1896|consen 1083 FTKNKLKELYIEEQKGTVSAVC-EVRG-HLLSSQ-GQKIIVRKLDRD--SELIGVAFI---DLPLYVHSMKVVKNLILAG 1154 (1366)
T ss_pred cccceeeeeehhhcccceEEEE-Eecc-EEEEcc-CcEEEEEEeccC--CcceeeEEe---ccceeEEehhhhhhheehh
Confidence 22222 22233344433 3355 455443 347889999543 112222222 2233333333345566666
Q ss_pred ecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCC--EEEEEcCCCeEEEEEc
Q 043172 501 STMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGG--FMAVGNAAGKVFLYKL 558 (564)
Q Consensus 501 s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~--~Lasgs~dG~V~lw~l 558 (564)
.. -..|.+.-.........+-......-.+.++.|--+|. +++++..+|.|++|-.
T Consensus 1155 DV--~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y 1212 (1366)
T KOG1896|consen 1155 DV--MKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMY 1212 (1366)
T ss_pred hh--hhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEe
Confidence 55 33444444432111111111111223477888887776 5678889999988754
No 474
>PRK13614 lipoprotein LpqB; Provisional
Probab=92.56 E-value=19 Score=39.43 Aligned_cols=217 Identities=11% Similarity=0.047 Sum_probs=112.9
Q ss_pred CCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeeecCcEEEEEEecCCCE
Q 043172 327 RKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQ 406 (564)
Q Consensus 327 dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~ 406 (564)
+|.+.. +..+....+....+.....+...++++++..+|+...++. .+|-...+.....+.....++.-.|.++| .
T Consensus 320 ~G~l~~--~~~~~~~pv~g~~g~~~~~~~s~avS~~g~~~A~~~~~~~-~l~~~~~g~~~~~~~~g~~Lt~PS~d~~g-~ 395 (573)
T PRK13614 320 DGELVR--YENGQISPLPDIQSVAGLGPASPAESPVSQTVAFLNGSRT-TLYTVSPGQPARALTSGSTLTRPSFSPQD-W 395 (573)
T ss_pred CCeEEE--ecCCCcccCCCccCcCcccccceeecCCCceEEEecCCCc-EEEEecCCCcceeeecCCCccCCcccCCC-C
Confidence 454533 3334433343343433335778899999999988877662 33322223333332233456777788777 5
Q ss_pred EEEEeCCC--eEEEEECC-CCce----eEEEe--ecCCcceEEEEECCCCCEEEEE-eCCCc--EEEEeCCcccCCccee
Q 043172 407 LLSSGGDG--QVYHWDLR-TRTC----IHRAV--DEGCINGTALCTSPDGTFFAAG-SDSGI--VNVYNRQEFLGGKRKP 474 (564)
Q Consensus 407 l~s~s~dg--~V~lwD~~-~~~~----~~~~~--~~~~~~i~~l~~sp~g~~lasg-s~dg~--V~iwd~~~~~~~~~~~ 474 (564)
+.+.-.+. .|..+.-. ++.. +.... ......|+.+.+|++|-.++.- +.+|. |.|--+.....+.+..
T Consensus 396 vWtv~~g~~~~vv~~~~~g~~~~~~~~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G~P~~ 475 (573)
T PRK13614 396 VWTAGPGGNGRIVAYRPTGVAEGAQAPTVTLTADWLAGRTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDGTPRE 475 (573)
T ss_pred EEEeeCCCCceEEEEecCCCcccccccceeecccccCCCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCCCeEE
Confidence 65554433 44444321 1111 00111 1122348999999999866653 34554 6665444322222222
Q ss_pred eEEcc--ccccceeEEEEcCCCcEEEEEec-CCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCC
Q 043172 475 IKTIE--NLTTKVDFMKFNNDAQILAICST-MKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAG 551 (564)
Q Consensus 475 ~~~~~--~~~~~I~~l~fspdg~~La~~s~-~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG 551 (564)
+.... .....+.++.|..++.+++.+.. ..+..+++..+..+... . ..+...+.+|+=..+.+-|+..+ ||
T Consensus 476 L~~~~~~~~~~~~~sl~W~~~~sl~V~~~~~~~~~~~~~v~v~~g~~~-~----l~~~~~~~~iaag~~~~~i~~~s-d~ 549 (573)
T PRK13614 476 LTAPITLAADSDADTGAWVGDSTVVVTKASATSNVVPELLSVDAGQPQ-Q----LAPWTGLTSITVGNGPEEVYGQS-DG 549 (573)
T ss_pred ccCceecccCCCcceeEEcCCCEEEEEeccCCCcceEEEEEeCCCCcc-c----CCCcCCeEEEeecCCccceEEEc-CC
Confidence 22111 22367899999999998777643 22356778877544321 1 11224455666554444444444 44
Q ss_pred eE
Q 043172 552 KV 553 (564)
Q Consensus 552 ~V 553 (564)
.+
T Consensus 550 ~v 551 (573)
T PRK13614 550 GI 551 (573)
T ss_pred CE
Confidence 44
No 475
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.47 E-value=1.9 Score=45.10 Aligned_cols=29 Identities=17% Similarity=0.130 Sum_probs=22.3
Q ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 043172 437 NGTALCTSPDGTFFAAGSDSGIVNVYNRQ 465 (564)
Q Consensus 437 ~i~~l~~sp~g~~lasgs~dg~V~iwd~~ 465 (564)
.+..+..++.|..++..+.+|.+.++=.+
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~ 133 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPK 133 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchh
Confidence 45677788999999999999877665433
No 476
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=92.45 E-value=15 Score=37.90 Aligned_cols=195 Identities=15% Similarity=0.238 Sum_probs=107.7
Q ss_pred EEEEcC---CCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEe----eCCCE--EEEEe-CC---CeEEEE
Q 043172 267 SVQFHR---NAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFL----PDGSQ--AIIAG-RR---KFFYSL 333 (564)
Q Consensus 267 ~l~fsp---dg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fs----pdg~~--l~s~~-~d---g~i~iw 333 (564)
+|-.|| ...+++.....+-+.+|+++++ .++.+. .+.+..+..- -.|+. |++++ ++ ..|++|
T Consensus 58 AIWvnp~dp~kSlIigTdK~~GL~VYdL~Gk---~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f 132 (381)
T PF02333_consen 58 AIWVNPADPAKSLIIGTDKKGGLYVYDLDGK---ELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLF 132 (381)
T ss_dssp EEE--SS-GGG-EEEEEETTTEEEEEETTS----EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEE
T ss_pred cEecCCCCcccceEEEEeCCCCEEEEcCCCc---EEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEE
Confidence 344454 4568888888999999999865 455553 2344443322 24443 34444 32 468888
Q ss_pred ECC--CCceeeecccc---ccCCcceEEEEE--cC-CCC-EEEEEeCCCeEEEEECC---CC----cEEEEeeecCcEEE
Q 043172 334 DLV--KAKADKIGPLV---GREEKSLEFFEV--SP-DSS-VIAFVGNEGYILLVSSK---TK----ELIGTLKMNGTVRS 397 (564)
Q Consensus 334 dl~--~~~~~~~~~~~---~~~~~~v~~~~~--sp-dg~-~la~~~~dg~I~lwd~~---t~----~~~~~~~~~~~V~~ 397 (564)
.+. ++....+.... ......+..+|+ +| +|. ++++.+.+|.+..|-+. .+ +.++.|...+.+..
T Consensus 133 ~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EG 212 (381)
T PF02333_consen 133 RIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEG 212 (381)
T ss_dssp EEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEE
T ss_pred EecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceE
Confidence 665 44443322110 111123566666 33 455 45556778988887764 33 45777777788999
Q ss_pred EEEecCCCEEEEEeCCCeEEEEECCCC-----ceeEEEeecC-CcceEEEEE--CCCCC-EEEEEe-CCCcEEEEeCCc
Q 043172 398 LAFADDGKQLLSSGGDGQVYHWDLRTR-----TCIHRAVDEG-CINGTALCT--SPDGT-FFAAGS-DSGIVNVYNRQE 466 (564)
Q Consensus 398 l~~spdg~~l~s~s~dg~V~lwD~~~~-----~~~~~~~~~~-~~~i~~l~~--sp~g~-~lasgs-~dg~V~iwd~~~ 466 (564)
+........|+.+-.+.-|+-|+..-. ..+......+ ...+-.|++ ..++. ||++.+ .+++..||+...
T Consensus 213 CVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 213 CVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp EEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred EEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence 999988889999999988999988631 2222221111 113334443 44443 565555 467899999875
No 477
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.33 E-value=7.3 Score=36.18 Aligned_cols=106 Identities=19% Similarity=0.138 Sum_probs=65.9
Q ss_pred CCCEEEEEeC--CCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEE-EEEeCCCeEEEEECCCCcEEEEeeecC
Q 043172 317 DGSQAIIAGR--RKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVI-AFVGNEGYILLVSSKTKELIGTLKMNG 393 (564)
Q Consensus 317 dg~~l~s~~~--dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l-a~~~~dg~I~lwd~~t~~~~~~~~~~~ 393 (564)
+|.++.+.|. ...|++||+.+++......+... .+..=-...-|.++ +..-.+|.-..+|..+.+.+..+..++
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~---~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~G 131 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPD---TVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEG 131 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCc---cccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCC
Confidence 4555666653 45799999999987654444310 01110011113333 344567889999999999988888777
Q ss_pred cEEEEEEecCCCEEEEEeCCCeEEEEECCCCcee
Q 043172 394 TVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCI 427 (564)
Q Consensus 394 ~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~ 427 (564)
.=..++. ++..|+.+....+++.-|..+...+
T Consensus 132 eGWgLt~--d~~~LimsdGsatL~frdP~tfa~~ 163 (262)
T COG3823 132 EGWGLTS--DDKNLIMSDGSATLQFRDPKTFAEL 163 (262)
T ss_pred cceeeec--CCcceEeeCCceEEEecCHHHhhhc
Confidence 6666654 4555777666677888777664443
No 478
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=92.31 E-value=21 Score=39.39 Aligned_cols=242 Identities=16% Similarity=0.172 Sum_probs=123.4
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeC-CcCeEEEEEee--CCCEEE-EE-eCCCeEEEEECCCC-
Q 043172 265 INSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLE-DCPVRKASFLP--DGSQAI-IA-GRRKFFYSLDLVKA- 338 (564)
Q Consensus 265 V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~-~~~I~~l~fsp--dg~~l~-s~-~~dg~i~iwdl~~~- 338 (564)
+.+..++|+...+-.|=....|.-|-+.. +.+.+.++... ...|.||.... ++..++ +| ..++..++..+..+
T Consensus 30 ~vs~~~s~~sn~IdiGIS~S~ISsYIi~P-TPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~ 108 (670)
T PF10395_consen 30 QVSDDFSPDSNQIDIGISGSAISSYIIKP-TPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKV 108 (670)
T ss_pred eeecccCCCCceEEEEeccchhhheecCC-CcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccC
Confidence 33446778877776665555666665543 34455555443 34456665543 223333 33 34444454444333
Q ss_pred ----------ceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCC--cEEEEee--ecCc-EEEEEEec-
Q 043172 339 ----------KADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTK--ELIGTLK--MNGT-VRSLAFAD- 402 (564)
Q Consensus 339 ----------~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~--~~~~~~~--~~~~-V~~l~~sp- 402 (564)
.......+. -...+-.+.|.+++..+++...+|.|.+|+...+ +.+..+. +... +.+ +|-+
T Consensus 109 ~~~~~~~~~~e~~~~~~~k--l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys-~fv~~ 185 (670)
T PF10395_consen 109 GSTEDGTVNSETTNEFELK--LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYS-KFVND 185 (670)
T ss_pred ccccccccCccccceEEEE--cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehh-hhhcc
Confidence 000111111 1235788999999999999999999999999322 2222222 2221 111 2222
Q ss_pred -----CCCEEEEEeC-C---CeEEEEEC--CCCceeEEEe----ecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcc
Q 043172 403 -----DGKQLLSSGG-D---GQVYHWDL--RTRTCIHRAV----DEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEF 467 (564)
Q Consensus 403 -----dg~~l~s~s~-d---g~V~lwD~--~~~~~~~~~~----~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~ 467 (564)
...++++.+. . -..+++.+ ....+. .+. ......-..+|+. .|.+... .++.|.+|++...
T Consensus 186 ~~~~~~~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~-El~s~~~e~~~~~~s~f~Y~-~G~LY~l--~~~~i~~ysip~f 261 (670)
T PF10395_consen 186 FELENGKDLLLTVSQLSNSKLSYKLISLSNESSSIF-ELSSTILENFGLEDSKFCYQ-FGKLYQL--SKKTISSYSIPNF 261 (670)
T ss_pred cccccCCceEEEEEEcCCCcEEEEEEEeccCCcceE-EeehheeccCCcccceEEEe-CCEEEEE--eCCEEEEEEcCCc
Confidence 1234444443 2 24677777 222222 221 1111122344554 5553333 6779999999876
Q ss_pred cCCcceeeEEcccc-----c-cceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCC
Q 043172 468 LGGKRKPIKTIENL-----T-TKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWP 523 (564)
Q Consensus 468 ~~~~~~~~~~~~~~-----~-~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~ 523 (564)
+..+++.-. . ..+.++. .|....++.+. ++.|+++|+.-...+..+.
T Consensus 262 -----~~~~tI~l~~ii~~~~~~~vSl~-~~s~nRvLLs~---~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 262 -----QIQKTISLPSIIDKESDDLVSLK-PPSPNRVLLSV---NNKIYLLDLKFESILSEFE 314 (670)
T ss_pred -----eEEEEEEechhhccccccceEee-cCCCCeEEEEc---CCEEEEEeehhhhhhhhhh
Confidence 544444311 1 1233333 23444444444 5799999997665555444
No 479
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.24 E-value=0.0067 Score=62.06 Aligned_cols=144 Identities=13% Similarity=0.141 Sum_probs=99.6
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEE-EeCCCeEEEEECCCCceeeec
Q 043172 266 NSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAII-AGRRKFFYSLDLVKAKADKIG 344 (564)
Q Consensus 266 ~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s-~~~dg~i~iwdl~~~~~~~~~ 344 (564)
-...|-|.+.-++.++.+..+..||-.+. ...... ..+....++|..++..++. +-..+.+++|++.+....++
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~agq---~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqL- 112 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKAGQ---VILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQL- 112 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhhcc---eecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHH-
Confidence 34557776666888888888888875532 222221 2345567888888876655 44678999999987654332
Q ss_pred cccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEeCCCeEE
Q 043172 345 PLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQVY 417 (564)
Q Consensus 345 ~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~V~ 417 (564)
.+.+.. ...-+.|++.+..++.+...|.+.|++..+.+.+-.+. |...+++++|.+.+.. +.++.|..+.
T Consensus 113 E~gg~~--s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~v-il~dcd~~L~ 183 (615)
T KOG2247|consen 113 ESGGTS--SKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYV-ILCDCDNTLS 183 (615)
T ss_pred hccCcc--hHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEeccccee-eecCcHHHHH
Confidence 233333 23348899999999999889999999998877666665 8889999999997754 4444454443
No 480
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.05 E-value=1 Score=42.75 Aligned_cols=73 Identities=21% Similarity=0.322 Sum_probs=51.5
Q ss_pred ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEE------ee-------cCCcceEEEEECCCCCEEEEEeCCC
Q 043172 391 MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRA------VD-------EGCINGTALCTSPDGTFFAAGSDSG 457 (564)
Q Consensus 391 ~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~------~~-------~~~~~i~~l~~sp~g~~lasgs~dg 457 (564)
...++..+ ...+.+|++.+.+|.+++||+.+++++..- .. .....|..+.++.+|.-|++-+ +|
T Consensus 11 Lgs~~~~l--~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng 87 (219)
T PF07569_consen 11 LGSPVSFL--ECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NG 87 (219)
T ss_pred cCCceEEE--EeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CC
Confidence 34444444 446889999999999999999998775433 11 2334677888888887766655 47
Q ss_pred cEEEEeCCc
Q 043172 458 IVNVYNRQE 466 (564)
Q Consensus 458 ~V~iwd~~~ 466 (564)
..+.|+..-
T Consensus 88 ~~y~y~~~L 96 (219)
T PF07569_consen 88 DSYSYSPDL 96 (219)
T ss_pred CEEEecccc
Confidence 788888765
No 481
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.00 E-value=12 Score=42.75 Aligned_cols=268 Identities=11% Similarity=0.055 Sum_probs=118.2
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEE---------EeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCC
Q 043172 268 VQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSI---------FLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKA 338 (564)
Q Consensus 268 l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~---------~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~ 338 (564)
.++..-|+.|+.|+.+|.+.+|.+.....+..... ..+..+|..+...+.-..+++- .++.+.++.+.+-
T Consensus 20 ~~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll~l-~dsqi~~~~l~~~ 98 (877)
T KOG2063|consen 20 LCVAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLLIL-SDSQIAVHKLPEL 98 (877)
T ss_pred hHHHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchhee-cCCcceeeecCcc
Confidence 34445688999999999999999875422211111 1124566666665544444443 4667888877665
Q ss_pred ceeeeccccccCCcceEEEEEc--C-C-C--CEEEEEeC--CCeEEEEECCCCcEEE-EeeecCcEEEEEEecCCCEEEE
Q 043172 339 KADKIGPLVGREEKSLEFFEVS--P-D-S--SVIAFVGN--EGYILLVSSKTKELIG-TLKMNGTVRSLAFADDGKQLLS 409 (564)
Q Consensus 339 ~~~~~~~~~~~~~~~v~~~~~s--p-d-g--~~la~~~~--dg~I~lwd~~t~~~~~-~~~~~~~V~~l~~spdg~~l~s 409 (564)
+.... ++.-+.+..+++. + . + .+.+.... ......|+-+.+.... .+.....+.+.+|. +..+.+
T Consensus 99 ~~~~~----~~~~Kg~~~f~~~~~~~s~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~c~ 172 (877)
T KOG2063|consen 99 EPVPS----GTRLKGASLFTIDLRPISTGPSVYEICLSVRKRLIRFFWNGRDGIVLVKELGFPDVPKARAWC--GHIVCL 172 (877)
T ss_pred ccccc----ccccccceeeccccccccCCcceEEEEeeccceEEEEEecCCCceEEEEecccccchhhhccc--ceeEEE
Confidence 43111 1111111111111 1 1 1 12222221 1223334433332221 11122333444443 443433
Q ss_pred EeCCCeEEEEECCCCceeEEEeecC--CcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeE
Q 043172 410 SGGDGQVYHWDLRTRTCIHRAVDEG--CINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDF 487 (564)
Q Consensus 410 ~s~dg~V~lwD~~~~~~~~~~~~~~--~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~ 487 (564)
+-.+....+|.-.++.....+.... ...-..|+-.+++..++.| .|+...+-|..... ....++.- . ....+
T Consensus 173 ~~~~~~~ii~~~~~~~~~~~~~s~~~~~s~~P~I~~l~~~~~ll~~-kd~~gv~vd~~G~~-~~~~~l~w-s---~~P~~ 246 (877)
T KOG2063|consen 173 GLKKSYYIINNTSKGVGPNLFPSSMDNESRKPLIKSLSDQSELLLG-KDNIGVVVDLNGII-AQRGTLVW-S---EVPLS 246 (877)
T ss_pred eecceeEEEecCCCccccceeeeccccccCCCeEEEecCCceEEEc-cCceEEEEecCCcc-cCCCceEe-c---ccchh
Confidence 3332333344333332111111110 0111223333555556555 55566666654420 00011111 1 11111
Q ss_pred EEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEc
Q 043172 488 MKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKL 558 (564)
Q Consensus 488 l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l 558 (564)
+. -+..|+++-+ ++.|.||...++..++.++.. +.+.. -++.+.+.+++.+..+..++--+
T Consensus 247 v~--~~~PYlIa~~---~~~veI~s~~~~qlvQSI~~~----~~~~~-l~s~~~~i~~~~~~s~v~~L~p~ 307 (877)
T KOG2063|consen 247 VV--VESPYLIALL---DRSVEIRSKLDGQLVQSITPL----SNGRS-LLSAHNGIIFVASLSNVWILVPV 307 (877)
T ss_pred hc--ccCceEEEEc---cccEEEEeccCHHHhhccccc----cccce-eeecCCcEEEEEeccceEEEEec
Confidence 21 2455666655 569999999998888776311 22222 23334455666655554444333
No 482
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.99 E-value=1.5 Score=41.61 Aligned_cols=75 Identities=17% Similarity=0.163 Sum_probs=53.5
Q ss_pred EeeCCCEEEEEeCCCeEEEEECCCCceeeec----cccc-------cCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 043172 314 FLPDGSQAIIAGRRKFFYSLDLVKAKADKIG----PLVG-------REEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKT 382 (564)
Q Consensus 314 fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~----~~~~-------~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t 382 (564)
+...+++|++...+|.+++||+.+++..... ++.. .....|..+.++.+|.-|++-+ +|..+.|+..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 4567889999999999999999998763221 1221 2334688888888887776654 47888888777
Q ss_pred CcEEEEe
Q 043172 383 KELIGTL 389 (564)
Q Consensus 383 ~~~~~~~ 389 (564)
+.++...
T Consensus 97 ~~W~~vs 103 (219)
T PF07569_consen 97 GCWIRVS 103 (219)
T ss_pred ceeEEec
Confidence 6666543
No 483
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.88 E-value=0.22 Score=54.89 Aligned_cols=177 Identities=14% Similarity=0.076 Sum_probs=82.8
Q ss_pred eCCcCeEEEEEee-CCCEEEEEeCCCeEEEEECC--CCceee-----eccccccCCcceEEEEEc---CCCCEEEEEeCC
Q 043172 304 LEDCPVRKASFLP-DGSQAIIAGRRKFFYSLDLV--KAKADK-----IGPLVGREEKSLEFFEVS---PDSSVIAFVGNE 372 (564)
Q Consensus 304 ~~~~~I~~l~fsp-dg~~l~s~~~dg~i~iwdl~--~~~~~~-----~~~~~~~~~~~v~~~~~s---pdg~~la~~~~d 372 (564)
+..+.|..+.|.. +...+. -.-|.+.||++. .|++.. +....+. .+.-+.|. ++.-++..+-.+
T Consensus 130 gf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs---~~~~V~wcp~~~~~~~ic~~~~~ 204 (1283)
T KOG1916|consen 130 GFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGS---DPQLVSWCPIAVNKVYICYGLKG 204 (1283)
T ss_pred cCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCC---CcceeeecccccccceeeeccCC
Confidence 3445566666642 111111 112567788765 333221 1112222 23344444 456677777777
Q ss_pred CeEEEEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEE
Q 043172 373 GYILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFA 451 (564)
Q Consensus 373 g~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~la 451 (564)
+.|.+....+... ..++ |...++.++|-..|-.++.+ +||||..||
T Consensus 205 ~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~--------------------------------lSpDGtv~a 251 (1283)
T KOG1916|consen 205 GEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLAS--------------------------------LSPDGTVFA 251 (1283)
T ss_pred CceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhhee--------------------------------eCCCCcEEE
Confidence 8888877654332 1111 55556555554333221111 456666666
Q ss_pred EEeCCCcEEEEeCCcccCCcceeeEEccccc-cceeEEEEcCC---------CcEEEEEecCCCCeEEEEEcCCCcee
Q 043172 452 AGSDSGIVNVYNRQEFLGGKRKPIKTIENLT-TKVDFMKFNND---------AQILAICSTMKKNSLKLIHIPSYNVF 519 (564)
Q Consensus 452 sgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~-~~I~~l~fspd---------g~~La~~s~~~d~~I~lwdl~s~~~~ 519 (564)
..+.||.+..|.+.-.......+++..+.|. .+-.|.-|+.+ -+++++++. .+..+++|.....++.
T Consensus 252 ~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd-~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 252 WAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTD-VNREEKFWAEAPWQCL 328 (1283)
T ss_pred EeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEeccc-CCcceeEeeccchhhh
Confidence 6666666666554432122234444444444 22222222221 122333332 2556777776655554
No 484
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=91.88 E-value=7.6 Score=33.42 Aligned_cols=118 Identities=10% Similarity=0.069 Sum_probs=70.8
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEEecCC------CCceeEEEEeCCcCeEEEEEee-----CCCEEEEEeCCCeEEEE
Q 043172 265 INSVQFHRNAQLLLVAGLDRRLRFFQIDGK------RNTKIQSIFLEDCPVRKASFLP-----DGSQAIIAGRRKFFYSL 333 (564)
Q Consensus 265 V~~l~fspdg~~l~s~s~dg~I~lwd~~~~------~~~~~~~~~~~~~~I~~l~fsp-----dg~~l~s~~~dg~i~iw 333 (564)
|..-.|....+.|++++.-|.|.|++.... ....+..+.. ...|++++-.+ ....|+.|+ ...+..|
T Consensus 1 VaiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi-n~~italaaG~l~~~~~~D~LliGt-~t~llaY 78 (136)
T PF14781_consen 1 VAIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI-NQEITALAAGRLKPDDGRDCLLIGT-QTSLLAY 78 (136)
T ss_pred CeEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEEC-CCceEEEEEEecCCCCCcCEEEEec-cceEEEE
Confidence 344567777788999999999999986532 2223444443 34677776544 234555554 5679999
Q ss_pred ECCCCceeeeccccccCCcceEEEEEc---CCCCEEEEEeCCCeEEEEECCCCcEEEE
Q 043172 334 DLVKAKADKIGPLVGREEKSLEFFEVS---PDSSVIAFVGNEGYILLVSSKTKELIGT 388 (564)
Q Consensus 334 dl~~~~~~~~~~~~~~~~~~v~~~~~s---pdg~~la~~~~dg~I~lwd~~t~~~~~~ 388 (564)
|+....-.....+. ..+.++.+- ....-++..+.+..|.-||....+...+
T Consensus 79 DV~~N~d~Fyke~~----DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 79 DVENNSDLFYKEVP----DGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred EcccCchhhhhhCc----cceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEE
Confidence 99877643222222 246666553 2223445555567788787665554443
No 485
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=91.77 E-value=20 Score=38.00 Aligned_cols=107 Identities=15% Similarity=0.145 Sum_probs=60.0
Q ss_pred cCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeecccc----ccCCcceEEEEEcCCC------CEEEEEe------
Q 043172 307 CPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLV----GREEKSLEFFEVSPDS------SVIAFVG------ 370 (564)
Q Consensus 307 ~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~----~~~~~~v~~~~~spdg------~~la~~~------ 370 (564)
.....|+|.|+|+.|++--..|.|++++..++....+..+. .........++++|+- .+|++..
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~ 109 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGD 109 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCC
Confidence 34578999999976665444699999987665432222221 1123468899999874 3444432
Q ss_pred ----CCCeEEEEECCCC--cE---EEEee-e----cCcEEEEEEecCCCEEEEEeCC
Q 043172 371 ----NEGYILLVSSKTK--EL---IGTLK-M----NGTVRSLAFADDGKQLLSSGGD 413 (564)
Q Consensus 371 ----~dg~I~lwd~~t~--~~---~~~~~-~----~~~V~~l~~spdg~~l~s~s~d 413 (564)
....|.-|.+... .. ...+. . ...-..|.|.|||.++++.+..
T Consensus 110 ~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 110 KELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 1234555554311 11 11111 0 1123567899999876665543
No 486
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.53 E-value=0.29 Score=54.00 Aligned_cols=79 Identities=14% Similarity=0.108 Sum_probs=45.7
Q ss_pred CCCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEEecCCCCce-----eEEEEeCCcCeEEEEEee---CCCEEEEEeCCCe
Q 043172 259 ESSTGPINSVQFHR-NAQLLLVAGLDRRLRFFQIDGKRNTK-----IQSIFLEDCPVRKASFLP---DGSQAIIAGRRKF 329 (564)
Q Consensus 259 ~~h~~~V~~l~fsp-dg~~l~s~s~dg~I~lwd~~~~~~~~-----~~~~~~~~~~I~~l~fsp---dg~~l~s~~~dg~ 329 (564)
++..+.|-.++|-. +-..++ -.-|.+.||+++.-.+.. ++.......++.-+.|.| +.-++..+-.++.
T Consensus 129 kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~ 206 (1283)
T KOG1916|consen 129 KGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGE 206 (1283)
T ss_pred hcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCc
Confidence 45667888888854 222222 223678899987433222 222222334555666665 5566666667788
Q ss_pred EEEEECCCCc
Q 043172 330 FYSLDLVKAK 339 (564)
Q Consensus 330 i~iwdl~~~~ 339 (564)
+++..+.+..
T Consensus 207 i~lL~~~ra~ 216 (1283)
T KOG1916|consen 207 IRLLNINRAL 216 (1283)
T ss_pred eeEeeechHH
Confidence 8887776554
No 487
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=91.49 E-value=30 Score=39.58 Aligned_cols=127 Identities=14% Similarity=0.159 Sum_probs=76.8
Q ss_pred cCcEEEEEEec-CCCEEEEEeCCCeEEEEECCCCc----eeEEEeec--C--------CcceEEEEECCCCCEEEEEeCC
Q 043172 392 NGTVRSLAFAD-DGKQLLSSGGDGQVYHWDLRTRT----CIHRAVDE--G--------CINGTALCTSPDGTFFAAGSDS 456 (564)
Q Consensus 392 ~~~V~~l~~sp-dg~~l~s~s~dg~V~lwD~~~~~----~~~~~~~~--~--------~~~i~~l~~sp~g~~lasgs~d 456 (564)
..+..+++|+| +...||+....|...||++..+. ........ + ......|.|.++-..|++++..
T Consensus 145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~ 224 (765)
T PF10214_consen 145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRS 224 (765)
T ss_pred CCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCC
Confidence 34788999999 55689999999999999992111 11111101 1 1123478888887777777655
Q ss_pred CcEEEEeCCcccCCcceeeEEccccccceeEEEEcCC--CcEEEEEecCCCCeEEEEEcCC----CceeccCCCCC
Q 043172 457 GIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNND--AQILAICSTMKKNSLKLIHIPS----YNVFSNWPPAN 526 (564)
Q Consensus 457 g~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspd--g~~La~~s~~~d~~I~lwdl~s----~~~~~~~~~~~ 526 (564)
.+.++|+.... ..++-.......+|..+.-+|. +..++..+ ..|..+++.. .+.+..|+-..
T Consensus 225 -~l~~~d~~~~~---~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs----~eiiw~~~~~~~~~~~~llSwkH~~ 292 (765)
T PF10214_consen 225 -KLMLIDFESNW---QTEYLVTAKTWSWILDVKRSPDNPSHVFILTS----KEIIWLDVKSSSEKLTRLLSWKHFR 292 (765)
T ss_pred -ceEEEECCCCC---ccchhccCCChhheeeEEecCCccceEEEEec----CeEEEEEccCCCCCeeeeeeccccc
Confidence 68899988751 1111122334567888888887 44444333 3677777765 34444554443
No 488
>PRK05560 DNA gyrase subunit A; Validated
Probab=91.34 E-value=32 Score=39.55 Aligned_cols=242 Identities=10% Similarity=0.050 Sum_probs=0.0
Q ss_pred eCCCEEEEEeCCCeEEEEECCC-----CceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEEC---------C
Q 043172 316 PDGSQAIIAGRRKFFYSLDLVK-----AKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSS---------K 381 (564)
Q Consensus 316 pdg~~l~s~~~dg~i~iwdl~~-----~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~---------~ 381 (564)
++-..+++.+.+|+|+...+.. ........+.-.....+..+........|+..++.|.++...+ .
T Consensus 496 ~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klKe~D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~~~~~ 575 (805)
T PRK05560 496 PEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTKEDDFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEASRTA 575 (805)
T ss_pred CCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccCCCCeeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCCCcCC
Q ss_pred CCcEE---EEeeecCcEEEEEEec---CCCEEEEEeCCCeEEEEECCCCce-----eEEEeecCCcceEEEEECCCCCEE
Q 043172 382 TKELI---GTLKMNGTVRSLAFAD---DGKQLLSSGGDGQVYHWDLRTRTC-----IHRAVDEGCINGTALCTSPDGTFF 450 (564)
Q Consensus 382 t~~~~---~~~~~~~~V~~l~~sp---dg~~l~s~s~dg~V~lwD~~~~~~-----~~~~~~~~~~~i~~l~~sp~g~~l 450 (564)
.|..+ ..+.....|..+.-.+ +...++..+.+|.++--.+..-.. ...+.......+..+........+
T Consensus 576 ~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLke~D~lv~v~~~~~~d~l 655 (805)
T PRK05560 576 RGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLDEGDELIGVRLTDGDDDI 655 (805)
T ss_pred CCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccCCCCEEEEEEEeCCCCEE
Q ss_pred EEEeCCCcEEEEeCCccc----CCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceecc-----
Q 043172 451 AAGSDSGIVNVYNRQEFL----GGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSN----- 521 (564)
Q Consensus 451 asgs~dg~V~iwd~~~~~----~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~----- 521 (564)
+..+..|.+..+...... ......+..+.....-+..+.+.++..++++.+. .|.++...+........
T Consensus 656 ll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~~E~Vv~~~~v~~~~~~il~vTk--~G~iKr~~l~e~~~~~R~~kG~ 733 (805)
T PRK05560 656 LLATKNGKAIRFPESDVRPMGRTARGVRGIKLREGDEVVSMDVVREDSQEILTVTE--NGYGKRTPVSEYRLQGRGGKGV 733 (805)
T ss_pred EEEECCCcEEEEEhhhcCccCcccCCcccccCCCCCEEEEEEEEcCCCcEEEEEEe--CCeEEEEEHHHhhccCCCCCcE
Q ss_pred -CCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q 043172 522 -WPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLN 559 (564)
Q Consensus 522 -~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~ 559 (564)
..........+..+........++..+.+|.+..+.+.
T Consensus 734 ~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf~~~ 772 (805)
T PRK05560 734 ITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIRTRVS 772 (805)
T ss_pred EeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEEEEHH
No 489
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=91.06 E-value=31 Score=40.58 Aligned_cols=86 Identities=10% Similarity=0.075 Sum_probs=41.9
Q ss_pred CCCCCCCCeeEEEEcC--CCC-----EEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEE-EEEe---eCC-CEEEEE
Q 043172 257 ADESSTGPINSVQFHR--NAQ-----LLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRK-ASFL---PDG-SQAIIA 324 (564)
Q Consensus 257 ~~~~h~~~V~~l~fsp--dg~-----~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~-l~fs---pdg-~~l~s~ 324 (564)
.+.||..+|.|....- ++. ..++.+.||.+.|=|.+ .+..+... +.|.. +... |.- -++|..
T Consensus 342 mgdG~qR~veC~~C~G~a~~~~L~aPvala~a~DGSl~VGDfN-----yIRRI~~d-g~v~tIl~L~~t~~sh~Yy~Avs 415 (1899)
T KOG4659|consen 342 MGDGHQRDVECPKCEGKADSISLFAPVALAYAPDGSLIVGDFN-----YIRRISQD-GQVSTILTLGLTDTSHSYYIAVS 415 (1899)
T ss_pred ccCcccccccCCCCCCccccceeeceeeEEEcCCCcEEEccch-----heeeecCC-CceEEEEEecCCCccceeEEEec
Confidence 3456777777765443 111 22344567777776543 22222221 12222 2222 111 234444
Q ss_pred eCCCeEEEEECCCCceeeeccccc
Q 043172 325 GRRKFFYSLDLVKAKADKIGPLVG 348 (564)
Q Consensus 325 ~~dg~i~iwdl~~~~~~~~~~~~~ 348 (564)
--+|+++|=|..+.++.++..+..
T Consensus 416 PvdgtlyvSdp~s~qv~rv~sl~~ 439 (1899)
T KOG4659|consen 416 PVDGTLYVSDPLSKQVWRVSSLEP 439 (1899)
T ss_pred CcCceEEecCCCcceEEEeccCCc
Confidence 467777777776666655555444
No 490
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=90.93 E-value=6 Score=41.47 Aligned_cols=152 Identities=15% Similarity=0.205 Sum_probs=82.4
Q ss_pred eeEEEEcC-CCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCC--------CEEEEEeCCCeEEEEEC
Q 043172 265 INSVQFHR-NAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDG--------SQAIIAGRRKFFYSLDL 335 (564)
Q Consensus 265 V~~l~fsp-dg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg--------~~l~s~~~dg~i~iwdl 335 (564)
+.-+-.|- +..+|+.-+ ...=+||.++-..+..+.....|... -+.|.|.. +.|+ |-.+..|.-.|.
T Consensus 469 p~K~mlh~~dssli~~dg-~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDP 544 (776)
T COG5167 469 PEKIMLHDNDSSLIYLDG-GERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDP 544 (776)
T ss_pred hhhceeecCCcceEEecC-CCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecc
Confidence 34444444 444444433 22234455444466677777766654 45666642 2333 434444555554
Q ss_pred CC-CceeeeccccccCC-cceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEeC
Q 043172 336 VK-AKADKIGPLVGREE-KSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGG 412 (564)
Q Consensus 336 ~~-~~~~~~~~~~~~~~-~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~ 412 (564)
+- |....+........ ....+.. .....++|+++..|.|++||--.......+. ....|..+..+.+|.++++.+.
T Consensus 545 R~~gNKi~v~esKdY~tKn~Fss~~-tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk 623 (776)
T COG5167 545 RARGNKIKVVESKDYKTKNKFSSGM-TTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK 623 (776)
T ss_pred cccCCceeeeeehhccccccccccc-cccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec
Confidence 42 21111111111100 0122222 2245699999999999999954433333333 4567889999999998887665
Q ss_pred CCeEEEEECC
Q 043172 413 DGQVYHWDLR 422 (564)
Q Consensus 413 dg~V~lwD~~ 422 (564)
..+.+.|++
T Consensus 624 -~yllL~d~~ 632 (776)
T COG5167 624 -NYLLLTDVP 632 (776)
T ss_pred -ceEEEEecc
Confidence 467777765
No 491
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=90.90 E-value=20 Score=38.40 Aligned_cols=273 Identities=15% Similarity=0.089 Sum_probs=0.0
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCC-cCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCcee
Q 043172 263 GPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLED-CPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKAD 341 (564)
Q Consensus 263 ~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~-~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~ 341 (564)
.+|..+.|...| .+..|+.+| ++-++..+.+.++...... .+|..+..+-.| .|.+|+..| +++.+..+....
T Consensus 165 ~~V~aLv~D~~g-~lWvgT~dG---L~~fd~~~gkalql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~~~s 238 (671)
T COG3292 165 TPVVALVFDANG-RLWVGTPDG---LSYFDAGRGKALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAEGWRAS 238 (671)
T ss_pred ccceeeeeeccC-cEEEecCCc---ceEEccccceEEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchhhcccc
Q ss_pred eeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee---ecCcEEEEEEecCCCEEEEEeCCCeEEE
Q 043172 342 KIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK---MNGTVRSLAFADDGKQLLSSGGDGQVYH 418 (564)
Q Consensus 342 ~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~---~~~~V~~l~~spdg~~l~s~s~dg~V~l 418 (564)
.......... |..+.-..+| .+-+|+..|..+.--.+.+-.+...+ .-+.|.++....+|. |-+++.+|.+++
T Consensus 239 n~~~~lp~~~--I~ll~qD~qG-~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs-LWv~t~~giv~~ 314 (671)
T COG3292 239 NWGPMLPSGN--ILLLVQDAQG-ELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS-LWVGTYGGIVRY 314 (671)
T ss_pred ccCCCCcchh--eeeeecccCC-CEEEeecccceeEecCCCCccccccccCCccccccceeeccCCC-EeeeccCceEEE
Q ss_pred EECCCCceeEEEee-cCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEE
Q 043172 419 WDLRTRTCIHRAVD-EGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQIL 497 (564)
Q Consensus 419 wD~~~~~~~~~~~~-~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~L 497 (564)
-+-.-......... ........++..-.+.-+......|.+.+-+-.++ ..+.+.............-..+..+
T Consensus 315 ~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG-----~~v~sv~q~Rg~nit~~~~d~~g~l 389 (671)
T COG3292 315 LTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTG-----ELVRSVHQLRGMNITTTLEDSRGRL 389 (671)
T ss_pred ecchhhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCC-----cEEEEeeeccccccchhhhccCCcE
Q ss_pred EEEecCCCCeEEEEEcCC-CceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEE
Q 043172 498 AICSTMKKNSLKLIHIPS-YNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFL 555 (564)
Q Consensus 498 a~~s~~~d~~I~lwdl~s-~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~l 555 (564)
-.++. .+-+-.|+..+ +.++. ....-+.+.|.++.=.|+++ |..|+.+|.++.
T Consensus 390 Wlgs~--q~GLsrl~n~n~~avld--e~agl~ss~V~aived~dns-LWIGTs~Glvk~ 443 (671)
T COG3292 390 WLGSM--QNGLSRLDNKNEWAVLD--EDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR 443 (671)
T ss_pred EEEec--ccchhhhccCCcccccc--cccCCcccceeeeeecCCCC-EEEeccCCeEec
No 492
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=90.61 E-value=23 Score=36.55 Aligned_cols=153 Identities=16% Similarity=0.103 Sum_probs=82.5
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeeecCc--
Q 043172 317 DGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLKMNGT-- 394 (564)
Q Consensus 317 dg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~~~~~-- 394 (564)
+|+ |++++.++.++.+|..+|+..-.....+ . ..+..-.+-.++ .++.++.+|.+.-.+..+++..........
T Consensus 111 ~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~-~-~~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~ 186 (370)
T COG1520 111 DGK-IYVGSWDGKLYALDASTGTLVWSRNVGG-S-PYYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLS 186 (370)
T ss_pred CCe-EEEecccceEEEEECCCCcEEEEEecCC-C-eEEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccc
Confidence 665 7778888899999998887654444433 0 011111222233 333444679999999998988776553221
Q ss_pred --EEEEEEecCCCEEEEEeC--CCeEEEEECCCCceeEEEeecCCcceEEE---EECCC-----CCEEEEEeCCCcEEEE
Q 043172 395 --VRSLAFADDGKQLLSSGG--DGQVYHWDLRTRTCIHRAVDEGCINGTAL---CTSPD-----GTFFAAGSDSGIVNVY 462 (564)
Q Consensus 395 --V~~l~~spdg~~l~s~s~--dg~V~lwD~~~~~~~~~~~~~~~~~i~~l---~~sp~-----g~~lasgs~dg~V~iw 462 (564)
+...... ....++.+.. ++.+.-.|+.++..............+.+ ..... +.-++.++.+|.+...
T Consensus 187 ~~~~~~~~~-~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l 265 (370)
T COG1520 187 LSIYGSPAI-ASGTVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCL 265 (370)
T ss_pred cccccCcee-ecceEEEecCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEE
Confidence 1111111 2234555555 56788888888877655432221111111 01111 1223456667777777
Q ss_pred eCCcccCCcceeeEEcc
Q 043172 463 NRQEFLGGKRKPIKTIE 479 (564)
Q Consensus 463 d~~~~~~~~~~~~~~~~ 479 (564)
+..++ .++..+.
T Consensus 266 ~~~~G-----~~~W~~~ 277 (370)
T COG1520 266 DADTG-----ELIWSFP 277 (370)
T ss_pred EcCCC-----ceEEEEe
Confidence 77766 5554444
No 493
>PRK13615 lipoprotein LpqB; Provisional
Probab=90.60 E-value=29 Score=37.81 Aligned_cols=157 Identities=8% Similarity=-0.001 Sum_probs=92.4
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEEeCCCeEEEEECCC-CceeEEEee
Q 043172 354 LEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRT-RTCIHRAVD 432 (564)
Q Consensus 354 v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~-~~~~~~~~~ 432 (564)
..+++.++++..+|+...++.+.++... +..... .....++.-.|.++| .+.+.-.....++..... +... ....
T Consensus 336 ~~s~avS~dg~~~A~v~~~~~l~vg~~~-~~~~~~-~~~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~-~v~v 411 (557)
T PRK13615 336 ADAATLSADGRQAAVRNASGVWSVGDGD-RDAVLL-DTRPGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGH-PVAV 411 (557)
T ss_pred cccceEcCCCceEEEEcCCceEEEecCC-Ccceee-ccCCccccCcCcCCC-CEEEEeCCCceEEEEecCCCceE-Eeec
Confidence 3688999999999988777877777554 222221 122346667777777 555554433344444322 3322 1111
Q ss_pred --cCCcceEEEEECCCCCEEEEEeC---CCcEEEEeCCcccCCcceee----EEccccccceeEEEEcCCCcEEEEEe-c
Q 043172 433 --EGCINGTALCTSPDGTFFAAGSD---SGIVNVYNRQEFLGGKRKPI----KTIENLTTKVDFMKFNNDAQILAICS-T 502 (564)
Q Consensus 433 --~~~~~i~~l~~sp~g~~lasgs~---dg~V~iwd~~~~~~~~~~~~----~~~~~~~~~I~~l~fspdg~~La~~s-~ 502 (564)
.....|+.+.+|++|-.++.-.. .+.|.|--+... ...+..+ ..+......+.++.|..++.+++.+. .
T Consensus 412 ~~~~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~-~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~~laVl~~~~ 490 (557)
T PRK13615 412 SWTATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRD-GGVPTSLTTTPLELLASPGTPLDATWVDELDVATLTLAP 490 (557)
T ss_pred cccCCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeC-CCcceEeeeccEEcccCcCcceeeEEcCCCEEEEEeccC
Confidence 12236899999999987665432 356666544331 1222223 12221233889999999999877763 3
Q ss_pred CCCCeEEEEEcCC
Q 043172 503 MKKNSLKLIHIPS 515 (564)
Q Consensus 503 ~~d~~I~lwdl~s 515 (564)
..+..+++..+..
T Consensus 491 ~~~~~v~~v~v~g 503 (557)
T PRK13615 491 DGERQVELHQVGG 503 (557)
T ss_pred CCCceEEEEECCC
Confidence 3356788888863
No 494
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=90.59 E-value=15 Score=37.44 Aligned_cols=141 Identities=18% Similarity=0.229 Sum_probs=74.8
Q ss_pred CcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeec-CCc---ceEEEEECCCCC--------------E-E--E
Q 043172 393 GTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDE-GCI---NGTALCTSPDGT--------------F-F--A 451 (564)
Q Consensus 393 ~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~-~~~---~i~~l~~sp~g~--------------~-l--a 451 (564)
++...++|...+.-|+++..---+...+...+.. .....+ .+. -...+.++++|. + + +
T Consensus 115 GRPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~a-~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~l 193 (376)
T KOG1520|consen 115 GRPLGIRFDKKGGDLYVADAYLGLLKVGPEGGLA-ELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFAAL 193 (376)
T ss_pred CCcceEEeccCCCeEEEEecceeeEEECCCCCcc-eeccccccCeeeeecCceeEcCCCeEEEeccccccchhheEEeee
Confidence 6677888888776666664433344444443331 111110 000 011222333222 1 2 2
Q ss_pred EEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCC-----ceecc-CCCC
Q 043172 452 AGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSY-----NVFSN-WPPA 525 (564)
Q Consensus 452 sgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~-----~~~~~-~~~~ 525 (564)
.+..+|.+.-||..+ +..+.+...-.-.+.|+.|||+.+++++-.......+.| ++.. +++.. +|
T Consensus 194 ~g~~~GRl~~YD~~t------K~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~ryw-i~g~k~gt~EvFa~~LP-- 264 (376)
T KOG1520|consen 194 EGDPTGRLFRYDPST------KVTKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYW-IKGPKAGTSEVFAEGLP-- 264 (376)
T ss_pred cCCCccceEEecCcc------cchhhhhhcccccccccCCCCCCEEEEEeeccceeeeeE-ecCCccCchhhHhhcCC--
Confidence 234578888888776 455555444455678999999999998866433334444 3322 22222 32
Q ss_pred CCCCCCcEEEEEeCCCCEEEEE
Q 043172 526 NRNLQYPRCLDFSPGGGFMAVG 547 (564)
Q Consensus 526 ~~~~~~V~~l~fspdg~~Lasg 547 (564)
+..-.+..+++|.|.+.-
T Consensus 265 ----G~PDNIR~~~~G~fWVal 282 (376)
T KOG1520|consen 265 ----GYPDNIRRDSTGHFWVAL 282 (376)
T ss_pred ----CCCcceeECCCCCEEEEE
Confidence 444566777888766543
No 495
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=89.56 E-value=1.5 Score=29.54 Aligned_cols=32 Identities=28% Similarity=0.362 Sum_probs=26.1
Q ss_pred CcEEEEEEecCC---CEEEEEeCCCeEEEEECCCC
Q 043172 393 GTVRSLAFADDG---KQLLSSGGDGQVYHWDLRTR 424 (564)
Q Consensus 393 ~~V~~l~~spdg---~~l~s~s~dg~V~lwD~~~~ 424 (564)
+.|.++.|+|.+ .+|+.+-.-|.|.++|+++.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 468999999854 47887777899999999963
No 496
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=89.15 E-value=17 Score=35.88 Aligned_cols=94 Identities=19% Similarity=0.271 Sum_probs=58.2
Q ss_pred CeEEEEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEe------CCCeEEEEECCCCceeEEEeec----CCcceEEE
Q 043172 373 GYILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSG------GDGQVYHWDLRTRTCIHRAVDE----GCINGTAL 441 (564)
Q Consensus 373 g~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s------~dg~V~lwD~~~~~~~~~~~~~----~~~~i~~l 441 (564)
..|++||..+.++...-. ..+.|+++.|..+.+.++.|. ....+..||+.+.... .+... -..+++.+
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNSIPGPVTAL 94 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccccCCCcEEEE
Confidence 569999999998876655 678999999996666666553 3457888998866432 22221 11345566
Q ss_pred EECC-CC-CEEEEEe-CC--CcEEEEeCCcc
Q 043172 442 CTSP-DG-TFFAAGS-DS--GIVNVYNRQEF 467 (564)
Q Consensus 442 ~~sp-~g-~~lasgs-~d--g~V~iwd~~~~ 467 (564)
.+.. ++ ++.+.|. .+ ..|..||-..+
T Consensus 95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W 125 (281)
T PF12768_consen 95 TFISNDGSNFWVAGRSANGSTFLMKYDGSSW 125 (281)
T ss_pred EeeccCCceEEEeceecCCCceEEEEcCCce
Confidence 5532 33 3444443 33 35667766554
No 497
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=89.09 E-value=1.3 Score=45.36 Aligned_cols=155 Identities=16% Similarity=0.190 Sum_probs=92.9
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE-Eee--ecC----cEE-EEEEecCCCEEEEEeCCCeEEEE-ECCC
Q 043172 353 SLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIG-TLK--MNG----TVR-SLAFADDGKQLLSSGGDGQVYHW-DLRT 423 (564)
Q Consensus 353 ~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~-~~~--~~~----~V~-~l~~spdg~~l~s~s~dg~V~lw-D~~~ 423 (564)
.+..+-..|+|+.+++-+. ..+.++++.+..... .+- ..+ .|+ .+.....|.-|++++.||.|.-| |++.
T Consensus 222 ~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~ 300 (733)
T COG4590 222 DVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRR 300 (733)
T ss_pred chHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeec
Confidence 5777888999999887655 778888876544321 111 111 122 22223346678888899988877 5543
Q ss_pred Cce-----eEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEE
Q 043172 424 RTC-----IHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILA 498 (564)
Q Consensus 424 ~~~-----~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La 498 (564)
+.. ++.+.... ..+..+.-..+.+-+++-+..|++.++..... +++ -+......+..+++||.+.+|+
T Consensus 301 ~~~p~l~h~R~f~l~p-a~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~-----~~l-L~~~~~~~~~~~~~Sp~~~~Ll 373 (733)
T COG4590 301 DGQPHLNHIRNFKLAP-AEVQFLLPETNRKGFYSLYRNGTLQSFYSTSE-----KLL-LFERAYQAPQLVAMSPNQAYLL 373 (733)
T ss_pred CCCCcceeeeccccCc-ccceeeccccccceEEEEcCCCceeeeecccC-----cce-ehhhhhcCcceeeeCcccchhe
Confidence 222 11111111 12222222223456777888898888776543 232 2333344678899999999998
Q ss_pred EEecCCCCeEEEEEcCCCce
Q 043172 499 ICSTMKKNSLKLIHIPSYNV 518 (564)
Q Consensus 499 ~~s~~~d~~I~lwdl~s~~~ 518 (564)
+-. .|.++++.+.+..+
T Consensus 374 ~e~---~gki~~~~l~Nr~P 390 (733)
T COG4590 374 SED---QGKIRLAQLENRNP 390 (733)
T ss_pred eec---CCceEEEEecCCCC
Confidence 765 47899999876543
No 498
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=88.75 E-value=28 Score=35.83 Aligned_cols=184 Identities=16% Similarity=0.103 Sum_probs=100.5
Q ss_pred eEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCC-----------CeEEEEECCCCcEEEEeee-----c
Q 043172 329 FFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNE-----------GYILLVSSKTKELIGTLKM-----N 392 (564)
Q Consensus 329 ~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-----------g~I~lwd~~t~~~~~~~~~-----~ 392 (564)
-++.|++.+....++....+...++-..++..|.+.+.+.|+.- ..+.++++.+.++-+.-.. .
T Consensus 99 dLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~R 178 (521)
T KOG1230|consen 99 DLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPR 178 (521)
T ss_pred eeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCC
Confidence 47888888887766554444333344455666767666676642 3466778887776543321 1
Q ss_pred CcEEEEEEecCCCEEEEEeC---------CCeEEEEECCCCceeEEEee---cCCcceEEEEECCCCCEEEEEeCCCcEE
Q 043172 393 GTVRSLAFADDGKQLLSSGG---------DGQVYHWDLRTRTCIHRAVD---EGCINGTALCTSPDGTFFAAGSDSGIVN 460 (564)
Q Consensus 393 ~~V~~l~~spdg~~l~s~s~---------dg~V~lwD~~~~~~~~~~~~---~~~~~i~~l~~sp~g~~lasgs~dg~V~ 460 (564)
+.-+-++|- .++|+.|+- -+-|++||+.+-+-...-.. ...-...++...|+|..++-|+....+.
T Consensus 179 SGHRMvawK--~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~ 256 (521)
T KOG1230|consen 179 SGHRMVAWK--RQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRV 256 (521)
T ss_pred ccceeEEee--eeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhh
Confidence 223444553 334555542 13588899987654432221 1122346777889999999887654331
Q ss_pred ------------EEeCCcccCC----cceeeEEccc--cccceeEEEEcCCCcEEEEEecCCC-------------CeEE
Q 043172 461 ------------VYNRQEFLGG----KRKPIKTIEN--LTTKVDFMKFNNDAQILAICSTMKK-------------NSLK 509 (564)
Q Consensus 461 ------------iwd~~~~~~~----~~~~~~~~~~--~~~~I~~l~fspdg~~La~~s~~~d-------------~~I~ 509 (564)
+|-+....+. .+.++..+.. ....-.+++..++++-|+.|+-. | +-++
T Consensus 257 kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~-D~eeeeEsl~g~F~NDLy 335 (521)
T KOG1230|consen 257 KKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVC-DLEEEEESLSGEFFNDLY 335 (521)
T ss_pred hhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEeccee-cccccchhhhhhhhhhhh
Confidence 2222211000 1112222211 12223467788898888887753 2 4567
Q ss_pred EEEcCC
Q 043172 510 LIHIPS 515 (564)
Q Consensus 510 lwdl~s 515 (564)
.||+..
T Consensus 336 ~fdlt~ 341 (521)
T KOG1230|consen 336 FFDLTR 341 (521)
T ss_pred heeccc
Confidence 777753
No 499
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=88.70 E-value=27 Score=34.69 Aligned_cols=195 Identities=14% Similarity=0.128 Sum_probs=0.0
Q ss_pred ceEEEEEcCCCCEEEEEeCC------------CeEEEEECCCCcEEEEee-------ecCcEEEEEEecCCC------EE
Q 043172 353 SLEFFEVSPDSSVIAFVGNE------------GYILLVSSKTKELIGTLK-------MNGTVRSLAFADDGK------QL 407 (564)
Q Consensus 353 ~v~~~~~spdg~~la~~~~d------------g~I~lwd~~t~~~~~~~~-------~~~~V~~l~~spdg~------~l 407 (564)
+|..+.+.+++++-+.=+.. -.|.+||+.+.+.++++. ..+.+.++.+..... ..
T Consensus 2 sV~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aY 81 (287)
T PF03022_consen 2 SVQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAY 81 (287)
T ss_dssp -EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEE
Q ss_pred EEEeCCCeEEEEECCCCceeEEEe------------------ecCCcceEEEEECC---CCCEEEEEeCCCc-EEEEeCC
Q 043172 408 LSSGGDGQVYHWDLRTRTCIHRAV------------------DEGCINGTALCTSP---DGTFFAAGSDSGI-VNVYNRQ 465 (564)
Q Consensus 408 ~s~s~dg~V~lwD~~~~~~~~~~~------------------~~~~~~i~~l~~sp---~g~~lasgs~dg~-V~iwd~~ 465 (564)
++=+..+.|.++|+.+++.-+... .....++..++.+| ++++|..+...+. ++--...
T Consensus 82 ItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~ 161 (287)
T PF03022_consen 82 ITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTS 161 (287)
T ss_dssp EEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHH
T ss_pred EeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHH
Q ss_pred cccCCcceeeE-------EccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCc---eeccCCCCCCCCCCcEEE
Q 043172 466 EFLGGKRKPIK-------TIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYN---VFSNWPPANRNLQYPRCL 535 (564)
Q Consensus 466 ~~~~~~~~~~~-------~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~---~~~~~~~~~~~~~~V~~l 535 (564)
........... .+-...+....+++.++|.++++-.. .+.|..|+....- .+..+.........+.++
T Consensus 162 ~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~--~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~ 239 (287)
T PF03022_consen 162 VLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVE--QNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGL 239 (287)
T ss_dssp HHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECC--CTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEE
T ss_pred HhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCC--CCeEEEEeCCCCcCccchheeEEcCceeecccee
Q ss_pred EEeC--CCCEEEEEcC
Q 043172 536 DFSP--GGGFMAVGNA 549 (564)
Q Consensus 536 ~fsp--dg~~Lasgs~ 549 (564)
.+.+ +|.+.+..+.
T Consensus 240 ~i~~~~~g~L~v~snr 255 (287)
T PF03022_consen 240 KIDPEGDGYLWVLSNR 255 (287)
T ss_dssp EE-T--TS-EEEEE-S
T ss_pred eeccccCceEEEEECc
No 500
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=88.67 E-value=24 Score=34.04 Aligned_cols=194 Identities=13% Similarity=0.103 Sum_probs=0.0
Q ss_pred EEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEE
Q 043172 322 IIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAF 400 (564)
Q Consensus 322 ~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~ 400 (564)
+.....+.|.++|-..-....+.--.+. +...+....+...+ --.-.+||+.+++....-. .+.-+.+-.+
T Consensus 3 ~~~~~~~~v~~~d~t~~g~s~~~~~~~~-------c~~~~~~~~~~~d~-~a~s~~yD~~tn~~rpl~v~td~FCSgg~~ 74 (243)
T PF07250_consen 3 MALLHNNKVIMFDRTNFGPSNISLPDGR-------CRDNPEDNALKFDG-PAHSVEYDPNTNTFRPLTVQTDTFCSGGAF 74 (243)
T ss_pred EeEccCCEEEEEeCCCcccccccCCCCc-------cccCccccccccCc-eEEEEEEecCCCcEEeccCCCCCcccCcCC
Q ss_pred ecCCCEEEEEeC---CCeEEEEECCC-----CceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcc
Q 043172 401 ADDGKQLLSSGG---DGQVYHWDLRT-----RTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKR 472 (564)
Q Consensus 401 spdg~~l~s~s~---dg~V~lwD~~~-----~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~ 472 (564)
.+||++|.+|+. ...+++++... .-....-.....-.--+...-|+|+.|++|+...-..=|--........
T Consensus 75 L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~ 154 (243)
T PF07250_consen 75 LPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGP 154 (243)
T ss_pred CCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcCCCcccccCCccCCCCc
Q ss_pred eeeEEcc-----ccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCC
Q 043172 473 KPIKTIE-----NLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANR 527 (564)
Q Consensus 473 ~~~~~~~-----~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~ 527 (564)
..+..+. .....--.+...|+|++++.+.. .-.|||..+.+.+..+|...+
T Consensus 155 ~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~----~s~i~d~~~n~v~~~lP~lPg 210 (243)
T PF07250_consen 155 VTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR----GSIIYDYKTNTVVRTLPDLPG 210 (243)
T ss_pred eeeecchhhhccCccccCceEEEcCCCCEEEEEcC----CcEEEeCCCCeEEeeCCCCCC
Done!