Query 043172
Match_columns 564
No_of_seqs 1092 out of 2669
Neff 9.1
Searched_HMMs 29240
Date Tue Mar 26 00:03:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043172.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043172hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ow8_A WD repeat-containing pr 100.0 9.4E-44 3.2E-48 360.4 40.8 288 258-559 28-320 (321)
2 1vyh_C Platelet-activating fac 100.0 7.3E-44 2.5E-48 373.7 40.4 286 258-559 104-410 (410)
3 1got_B GT-beta; complex (GTP-b 100.0 1.1E-42 3.9E-47 355.1 41.3 287 256-557 49-340 (340)
4 2ynn_A Coatomer subunit beta'; 100.0 1.4E-42 4.7E-47 348.7 39.6 287 258-560 9-302 (304)
5 2pbi_B Guanine nucleotide-bind 100.0 1.2E-41 3.9E-46 349.8 40.7 287 257-557 59-354 (354)
6 3iz6_a 40S ribosomal protein R 100.0 1.2E-42 4.1E-47 360.5 33.6 301 252-563 56-378 (380)
7 3fm0_A Protein CIAO1; WDR39,SG 100.0 9.6E-42 3.3E-46 349.0 39.6 304 256-563 9-338 (345)
8 4gqb_B Methylosome protein 50; 100.0 7.4E-42 2.5E-46 349.8 37.3 290 259-562 27-333 (344)
9 3frx_A Guanine nucleotide-bind 100.0 3.5E-41 1.2E-45 341.0 41.4 291 256-560 11-317 (319)
10 4g56_B MGC81050 protein; prote 100.0 9E-42 3.1E-46 351.1 35.5 290 258-560 38-343 (357)
11 2xzm_R RACK1; ribosome, transl 100.0 1E-40 3.6E-45 340.8 40.1 294 256-562 15-342 (343)
12 4ery_A WD repeat-containing pr 100.0 1.8E-40 6.3E-45 333.7 40.5 288 257-559 18-311 (312)
13 1nr0_A Actin interacting prote 100.0 3.6E-40 1.2E-44 363.4 42.8 325 228-560 26-479 (611)
14 1nr0_A Actin interacting prote 100.0 2.4E-40 8.2E-45 364.8 39.7 313 235-559 163-610 (611)
15 1erj_A Transcriptional repress 100.0 9.1E-40 3.1E-44 340.4 39.8 292 260-562 62-391 (393)
16 2hes_X YDR267CP; beta-propelle 100.0 6.9E-40 2.4E-44 333.1 37.4 296 257-561 9-329 (330)
17 1gxr_A ESG1, transducin-like e 100.0 5.7E-39 1.9E-43 324.2 43.0 284 260-559 49-336 (337)
18 4aow_A Guanine nucleotide-bind 100.0 5.5E-39 1.9E-43 325.4 42.3 296 255-563 31-340 (340)
19 1k8k_C P40, ARP2/3 complex 41 100.0 2.4E-38 8.3E-43 324.8 39.4 291 260-560 6-361 (372)
20 2ymu_A WD-40 repeat protein; u 100.0 2.3E-38 7.8E-43 345.4 41.4 278 258-557 299-577 (577)
21 3ei3_B DNA damage-binding prot 100.0 1.2E-38 4E-43 329.9 34.7 288 258-560 69-382 (383)
22 3dm0_A Maltose-binding peripla 100.0 2.9E-38 9.9E-43 353.4 40.5 291 258-561 378-694 (694)
23 2pm9_A Protein WEB1, protein t 100.0 4.2E-39 1.5E-43 335.8 31.3 314 240-561 43-415 (416)
24 1sq9_A Antiviral protein SKI8; 100.0 1.6E-38 5.4E-43 329.6 35.4 296 256-561 10-396 (397)
25 3zwl_B Eukaryotic translation 100.0 1.5E-37 5E-42 317.7 41.7 285 258-560 28-346 (369)
26 3ow8_A WD repeat-containing pr 100.0 5.9E-38 2E-42 317.7 36.4 270 232-514 48-320 (321)
27 1vyh_C Platelet-activating fac 100.0 4E-38 1.4E-42 330.0 34.6 274 228-514 116-410 (410)
28 2ymu_A WD-40 repeat protein; u 100.0 3.5E-37 1.2E-41 336.0 42.0 281 257-559 257-538 (577)
29 1r5m_A SIR4-interacting protei 100.0 9E-38 3.1E-42 325.6 34.2 283 261-559 107-424 (425)
30 4e54_B DNA damage-binding prot 100.0 1.7E-38 5.9E-43 335.2 27.5 294 259-562 116-432 (435)
31 1got_B GT-beta; complex (GTP-b 100.0 4.3E-37 1.5E-41 313.7 35.9 273 229-512 64-340 (340)
32 3odt_A Protein DOA1; ubiquitin 100.0 1.2E-36 4.3E-41 304.0 38.1 282 257-561 13-297 (313)
33 3k26_A Polycomb protein EED; W 100.0 1.2E-37 4.2E-42 318.2 31.2 292 259-560 15-366 (366)
34 3i2n_A WD repeat-containing pr 100.0 9.8E-38 3.4E-42 318.1 30.2 291 259-562 15-355 (357)
35 2ynn_A Coatomer subunit beta'; 100.0 1.3E-36 4.6E-41 305.0 36.9 253 297-562 4-261 (304)
36 3dwl_C Actin-related protein 2 100.0 1.5E-38 5.3E-43 327.8 21.6 291 261-558 10-377 (377)
37 1r5m_A SIR4-interacting protei 100.0 8.3E-37 2.8E-41 318.3 34.8 297 247-560 30-361 (425)
38 4gqb_B Methylosome protein 50; 100.0 3.6E-36 1.2E-40 307.6 38.6 278 228-519 38-335 (344)
39 3gre_A Serine/threonine-protei 100.0 6.8E-37 2.3E-41 322.3 33.6 290 259-557 60-437 (437)
40 4h5i_A Guanine nucleotide-exch 100.0 2.3E-37 7.9E-42 319.2 28.5 289 263-559 15-342 (365)
41 3fm0_A Protein CIAO1; WDR39,SG 100.0 3.2E-36 1.1E-40 308.0 35.7 291 228-521 24-341 (345)
42 3vl1_A 26S proteasome regulato 100.0 3.6E-36 1.2E-40 314.6 36.6 319 229-560 65-419 (420)
43 2pbi_B Guanine nucleotide-bind 100.0 4.9E-36 1.7E-40 307.8 35.8 273 230-512 74-354 (354)
44 2pm9_A Protein WEB1, protein t 100.0 2.8E-37 9.6E-42 322.0 25.0 289 263-562 13-339 (416)
45 1gxr_A ESG1, transducin-like e 100.0 1E-35 3.5E-40 300.4 35.0 285 261-562 8-298 (337)
46 4a11_B DNA excision repair pro 100.0 3.9E-35 1.3E-39 304.2 39.1 292 257-562 38-367 (408)
47 2pm7_B Protein transport prote 100.0 2.1E-35 7.2E-40 295.3 35.7 253 257-515 4-285 (297)
48 3mkq_A Coatomer beta'-subunit; 100.0 1.1E-35 3.9E-40 337.4 37.6 287 258-560 9-302 (814)
49 3dw8_B Serine/threonine-protei 100.0 2.2E-35 7.6E-40 310.9 35.5 290 259-559 25-445 (447)
50 2j04_B YDR362CP, TAU91; beta p 100.0 1.7E-36 5.9E-41 326.4 27.3 290 261-559 132-516 (524)
51 3vl1_A 26S proteasome regulato 100.0 4.1E-36 1.4E-40 314.1 29.2 284 262-561 56-366 (420)
52 1yfq_A Cell cycle arrest prote 100.0 2.5E-35 8.6E-40 298.9 34.0 282 258-552 7-315 (342)
53 3mmy_A MRNA export factor; mRN 100.0 2.6E-35 9E-40 300.8 34.4 299 248-559 25-345 (368)
54 4g56_B MGC81050 protein; prote 100.0 2E-35 6.9E-40 303.7 32.6 277 228-518 50-346 (357)
55 3frx_A Guanine nucleotide-bind 100.0 9.7E-35 3.3E-39 293.6 37.0 268 233-516 31-318 (319)
56 2xzm_R RACK1; ribosome, transl 100.0 1.4E-34 4.7E-39 295.5 37.3 274 231-516 38-341 (343)
57 4aez_A CDC20, WD repeat-contai 100.0 1.3E-34 4.3E-39 302.1 37.7 286 260-562 89-382 (401)
58 4ery_A WD repeat-containing pr 100.0 2.3E-34 7.9E-39 289.1 37.3 277 228-514 31-311 (312)
59 2pm7_B Protein transport prote 100.0 6E-35 2.1E-39 292.0 32.2 255 300-559 3-284 (297)
60 3iz6_a 40S ribosomal protein R 100.0 5.7E-36 1.9E-40 310.3 25.5 282 228-517 74-377 (380)
61 3sfz_A APAF-1, apoptotic pepti 100.0 1.4E-34 4.9E-39 343.6 40.8 289 258-561 611-1035(1249)
62 2hes_X YDR267CP; beta-propelle 100.0 1.5E-34 5.1E-39 293.7 33.2 275 234-515 26-328 (330)
63 1erj_A Transcriptional repress 100.0 4.5E-34 1.5E-38 297.4 36.2 240 262-515 123-389 (393)
64 1pgu_A Actin interacting prote 100.0 6.1E-34 2.1E-38 312.0 38.6 311 234-560 175-614 (615)
65 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.4E-33 4.8E-38 298.2 39.4 308 228-560 125-442 (445)
66 3v7d_B Cell division control p 100.0 1.5E-33 5.1E-38 299.1 39.6 280 258-562 117-423 (464)
67 3bg1_A Protein SEC13 homolog; 100.0 3.2E-35 1.1E-39 296.8 24.7 252 258-514 9-292 (316)
68 4ggc_A P55CDC, cell division c 100.0 8.4E-34 2.9E-38 284.4 34.9 282 264-561 27-316 (318)
69 4gga_A P55CDC, cell division c 100.0 1.2E-33 4.1E-38 296.7 37.5 282 263-561 106-396 (420)
70 3f3f_A Nucleoporin SEH1; struc 100.0 4.4E-34 1.5E-38 288.5 31.8 295 258-562 7-339 (351)
71 3v7d_B Cell division control p 100.0 3.8E-33 1.3E-37 296.0 39.1 310 228-558 128-461 (464)
72 1pgu_A Actin interacting prote 100.0 1.5E-33 5.2E-38 308.8 36.4 290 258-560 14-328 (615)
73 3mkq_A Coatomer beta'-subunit; 100.0 2.4E-33 8.1E-38 318.3 38.6 319 228-560 21-386 (814)
74 3jrp_A Fusion protein of prote 100.0 1.6E-33 5.5E-38 289.0 32.0 254 257-514 6-286 (379)
75 3bg1_A Protein SEC13 homolog; 100.0 1.6E-34 5.5E-39 291.7 24.1 254 301-559 8-292 (316)
76 2oaj_A Protein SNI1; WD40 repe 100.0 1.4E-33 4.7E-38 323.4 34.8 320 228-561 25-520 (902)
77 2ovr_B FBW7, F-BOX/WD repeat p 100.0 9.6E-33 3.3E-37 291.7 38.6 279 257-562 113-393 (445)
78 3sfz_A APAF-1, apoptotic pepti 100.0 5.7E-33 2E-37 329.9 41.1 320 230-562 625-1076(1249)
79 2oaj_A Protein SNI1; WD40 repe 100.0 2.6E-33 9E-38 321.0 35.7 323 230-558 108-659 (902)
80 1p22_A F-BOX/WD-repeat protein 100.0 7.1E-33 2.4E-37 292.0 35.1 274 259-562 130-416 (435)
81 2aq5_A Coronin-1A; WD40 repeat 100.0 7.6E-34 2.6E-38 296.1 27.2 288 264-560 36-342 (402)
82 3zwl_B Eukaryotic translation 100.0 1.4E-32 4.7E-37 280.7 35.0 279 228-518 40-349 (369)
83 3dm0_A Maltose-binding peripla 100.0 8.3E-33 2.9E-37 309.1 35.6 244 258-514 426-692 (694)
84 3jrp_A Fusion protein of prote 100.0 7.3E-33 2.5E-37 284.1 32.1 258 298-559 3-286 (379)
85 1sq9_A Antiviral protein SKI8; 100.0 1.1E-32 3.7E-37 285.6 31.1 276 233-516 27-396 (397)
86 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3E-32 1E-36 288.6 34.6 285 263-560 5-391 (450)
87 4aow_A Guanine nucleotide-bind 100.0 2.9E-31 1E-35 268.4 38.2 272 232-517 51-339 (340)
88 1k8k_C P40, ARP2/3 complex 41 100.0 3.6E-32 1.2E-36 278.7 31.8 252 302-560 4-274 (372)
89 3jro_A Fusion protein of prote 100.0 9.2E-33 3.1E-37 311.5 29.7 255 257-515 4-285 (753)
90 3gre_A Serine/threonine-protei 100.0 3.5E-33 1.2E-37 293.9 24.6 276 269-562 34-361 (437)
91 3i2n_A WD repeat-containing pr 100.0 1.4E-32 4.8E-37 279.8 28.1 255 260-517 63-355 (357)
92 3ei3_B DNA damage-binding prot 100.0 4.2E-32 1.4E-36 280.6 30.6 270 229-515 82-382 (383)
93 4aez_A CDC20, WD repeat-contai 100.0 1E-31 3.4E-36 280.2 32.3 249 260-521 132-386 (401)
94 3dwl_C Actin-related protein 2 100.0 5.7E-33 1.9E-37 286.1 22.4 253 302-559 7-280 (377)
95 3k26_A Polycomb protein EED; W 100.0 3E-32 1E-36 278.2 27.1 246 260-514 67-365 (366)
96 3vu4_A KMHSV2; beta-propeller 100.0 2.7E-31 9.1E-36 272.6 34.1 280 257-560 14-336 (355)
97 2xyi_A Probable histone-bindin 100.0 4.2E-31 1.4E-35 278.3 33.7 252 300-559 122-409 (430)
98 4e54_B DNA damage-binding prot 100.0 2.6E-32 9E-37 287.9 24.1 275 232-518 132-433 (435)
99 4gga_A P55CDC, cell division c 100.0 7.4E-31 2.5E-35 275.4 34.3 248 258-520 143-400 (420)
100 2j04_A TAU60, YPL007P, hypothe 100.0 6.8E-32 2.3E-36 285.3 26.2 265 261-559 14-296 (588)
101 2aq5_A Coronin-1A; WD40 repeat 100.0 2.7E-31 9.2E-36 276.8 29.9 268 241-518 56-345 (402)
102 3bws_A Protein LP49; two-domai 100.0 1.2E-30 4E-35 273.9 34.8 282 263-561 123-433 (433)
103 2j04_B YDR362CP, TAU91; beta p 100.0 1.6E-31 5.5E-36 287.6 27.8 251 259-515 204-517 (524)
104 3odt_A Protein DOA1; ubiquitin 100.0 1.9E-30 6.6E-35 259.0 32.7 271 230-520 27-301 (313)
105 4h5i_A Guanine nucleotide-exch 100.0 1.1E-30 3.9E-35 269.0 31.5 245 258-516 69-344 (365)
106 4a11_B DNA excision repair pro 100.0 1.4E-30 4.9E-35 269.8 32.1 313 231-562 55-407 (408)
107 2xyi_A Probable histone-bindin 100.0 2.2E-30 7.7E-35 272.7 31.5 253 260-516 126-411 (430)
108 1l0q_A Surface layer protein; 100.0 2.7E-29 9.1E-34 259.9 38.4 268 275-561 3-276 (391)
109 3dw8_B Serine/threonine-protei 100.0 6.3E-31 2.2E-35 276.8 26.5 249 305-562 27-375 (447)
110 3jro_A Fusion protein of prote 100.0 1.2E-30 4.1E-35 294.2 29.8 257 300-560 3-285 (753)
111 1p22_A F-BOX/WD-repeat protein 100.0 3E-30 1E-34 271.9 30.9 289 229-539 140-434 (435)
112 3lrv_A PRE-mRNA-splicing facto 100.0 2.9E-30 9.8E-35 263.3 28.7 242 269-561 43-293 (343)
113 1yfq_A Cell cycle arrest prote 100.0 1.3E-30 4.3E-35 264.2 25.6 249 303-562 8-284 (342)
114 1l0q_A Surface layer protein; 100.0 7E-29 2.4E-33 256.8 38.4 283 263-561 32-343 (391)
115 4ggc_A P55CDC, cell division c 100.0 4E-29 1.4E-33 250.2 33.5 244 258-516 63-316 (318)
116 2j04_A TAU60, YPL007P, hypothe 100.0 1.2E-30 4.3E-35 275.6 23.3 288 228-549 23-350 (588)
117 4gq1_A NUP37; propeller, trans 100.0 6.6E-30 2.3E-34 265.9 26.3 288 263-563 16-392 (393)
118 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3.8E-28 1.3E-32 257.0 34.7 252 259-515 99-391 (450)
119 3mmy_A MRNA export factor; mRN 100.0 1E-28 3.5E-33 251.8 27.2 256 295-561 28-305 (368)
120 3f3f_A Nucleoporin SEH1; struc 100.0 9.5E-29 3.2E-33 249.3 26.4 285 228-520 19-342 (351)
121 2w18_A PALB2, fancn, partner a 100.0 1E-27 3.6E-32 238.8 31.6 278 265-559 42-356 (356)
122 3vu4_A KMHSV2; beta-propeller 100.0 3.1E-28 1.1E-32 249.8 27.8 247 297-561 10-272 (355)
123 3lrv_A PRE-mRNA-splicing facto 100.0 2.1E-28 7.3E-33 249.4 22.7 270 232-557 48-330 (343)
124 3bws_A Protein LP49; two-domai 100.0 9.6E-27 3.3E-31 244.1 35.2 285 261-561 59-391 (433)
125 4gq1_A NUP37; propeller, trans 100.0 3.8E-28 1.3E-32 252.7 23.3 244 260-514 87-388 (393)
126 1nir_A Nitrite reductase; hemo 100.0 4.6E-27 1.6E-31 254.5 32.5 296 265-562 181-516 (543)
127 2hqs_A Protein TOLB; TOLB, PAL 99.9 4E-26 1.4E-30 239.2 28.8 282 262-560 62-387 (415)
128 1ri6_A Putative isomerase YBHE 99.9 2E-25 7E-30 225.5 32.0 275 276-559 7-307 (343)
129 2w18_A PALB2, fancn, partner a 99.9 4.6E-26 1.6E-30 226.9 23.8 186 316-513 143-355 (356)
130 3u4y_A Uncharacterized protein 99.9 1.2E-24 4.2E-29 219.5 34.4 283 268-560 3-304 (331)
131 1nir_A Nitrite reductase; hemo 99.9 1.7E-24 5.8E-29 234.4 33.0 277 269-562 144-460 (543)
132 3vgz_A Uncharacterized protein 99.9 8.1E-24 2.8E-28 215.0 35.8 275 261-550 39-334 (353)
133 2hqs_A Protein TOLB; TOLB, PAL 99.9 5.7E-25 1.9E-29 230.4 27.3 262 259-542 114-410 (415)
134 2ecf_A Dipeptidyl peptidase IV 99.9 4.5E-25 1.5E-29 248.0 28.0 280 261-560 35-413 (741)
135 1xfd_A DIP, dipeptidyl aminope 99.9 6.1E-25 2.1E-29 246.1 24.5 285 263-560 17-393 (723)
136 2z3z_A Dipeptidyl aminopeptida 99.9 7.4E-24 2.5E-28 236.8 32.9 283 262-561 81-436 (706)
137 2ecf_A Dipeptidyl peptidase IV 99.9 2.8E-24 9.4E-29 241.6 28.9 283 264-559 110-458 (741)
138 2ojh_A Uncharacterized protein 99.9 2.9E-24 1E-28 211.5 25.2 259 279-551 17-293 (297)
139 1pby_B Quinohemoprotein amine 99.9 6.8E-24 2.3E-28 213.7 27.7 269 275-562 2-312 (337)
140 3hfq_A Uncharacterized protein 99.9 3.9E-23 1.3E-27 210.3 31.8 277 276-559 4-316 (347)
141 1ri6_A Putative isomerase YBHE 99.9 4.8E-23 1.6E-27 208.0 32.0 273 260-542 35-335 (343)
142 1xfd_A DIP, dipeptidyl aminope 99.9 1.5E-23 5E-28 234.9 27.8 279 264-548 62-428 (723)
143 3o4h_A Acylamino-acid-releasin 99.9 1.3E-22 4.4E-27 221.7 28.0 267 262-559 21-314 (582)
144 1k32_A Tricorn protease; prote 99.9 1.7E-22 5.9E-27 235.7 30.3 281 259-559 200-501 (1045)
145 1k32_A Tricorn protease; prote 99.9 1.8E-22 6.2E-27 235.5 28.7 283 261-562 294-639 (1045)
146 3scy_A Hypothetical bacterial 99.9 2.7E-21 9.1E-26 197.9 33.5 278 272-559 11-336 (361)
147 1jmx_B Amine dehydrogenase; ox 99.9 3.9E-22 1.3E-26 202.0 26.5 269 267-562 4-327 (349)
148 3hfq_A Uncharacterized protein 99.9 2.4E-21 8.2E-26 197.0 32.0 254 261-518 38-322 (347)
149 3u4y_A Uncharacterized protein 99.9 2.6E-21 8.9E-26 195.0 30.5 244 261-518 39-307 (331)
150 3scy_A Hypothetical bacterial 99.9 2.8E-20 9.6E-25 190.3 36.5 271 261-538 48-360 (361)
151 2ojh_A Uncharacterized protein 99.9 1.4E-21 4.9E-26 192.1 25.2 232 260-503 39-292 (297)
152 2z3z_A Dipeptidyl aminopeptida 99.9 9.5E-22 3.3E-26 219.7 25.9 274 264-560 27-391 (706)
153 3pe7_A Oligogalacturonate lyas 99.9 1.2E-21 4.3E-26 201.9 24.8 282 268-559 41-381 (388)
154 3vgz_A Uncharacterized protein 99.9 1E-20 3.6E-25 191.9 31.0 240 307-562 41-305 (353)
155 1pby_B Quinohemoprotein amine 99.9 4.3E-22 1.5E-26 200.4 19.6 245 264-526 35-321 (337)
156 2oit_A Nucleoporin 214KDA; NH2 99.9 1.8E-20 6.2E-25 197.2 30.9 296 261-560 35-405 (434)
157 1jof_A Carboxy-CIS,CIS-muconat 99.9 1.6E-20 5.5E-25 192.9 29.6 277 276-559 4-340 (365)
158 1z68_A Fibroblast activation p 99.9 4.2E-21 1.4E-25 215.0 24.9 276 267-560 20-391 (719)
159 2oit_A Nucleoporin 214KDA; NH2 99.9 6.5E-20 2.2E-24 193.0 25.5 243 306-557 36-330 (434)
160 1z68_A Fibroblast activation p 99.9 1.6E-20 5.6E-25 210.2 21.4 286 264-561 61-444 (719)
161 3o4h_A Acylamino-acid-releasin 99.8 2.9E-20 1E-24 203.0 21.8 231 306-558 21-274 (582)
162 1jmx_B Amine dehydrogenase; ox 99.8 1.9E-19 6.4E-24 182.2 24.8 246 264-525 44-335 (349)
163 1jof_A Carboxy-CIS,CIS-muconat 99.8 8.3E-19 2.8E-23 180.1 27.6 251 261-516 38-342 (365)
164 3c5m_A Oligogalacturonate lyas 99.8 1E-19 3.5E-24 187.6 19.4 282 261-558 34-380 (396)
165 4a5s_A Dipeptidyl peptidase 4 99.8 1.5E-18 5.2E-23 195.1 26.3 282 263-558 17-396 (740)
166 2gop_A Trilobed protease; beta 99.8 1.3E-17 4.4E-22 169.1 29.6 256 263-559 15-330 (347)
167 4a5s_A Dipeptidyl peptidase 4 99.8 2.4E-18 8.3E-23 193.4 23.8 245 308-560 18-353 (740)
168 3azo_A Aminopeptidase; POP fam 99.8 2.1E-17 7.3E-22 183.0 31.1 288 259-560 20-369 (662)
169 3pe7_A Oligogalacturonate lyas 99.8 6.1E-18 2.1E-22 174.2 23.8 255 296-561 20-330 (388)
170 2oiz_A Aromatic amine dehydrog 99.8 2.2E-17 7.6E-22 169.3 27.0 274 273-561 14-335 (361)
171 3fvz_A Peptidyl-glycine alpha- 99.8 6.2E-17 2.1E-21 163.7 27.8 245 306-559 23-321 (329)
172 2oiz_A Aromatic amine dehydrog 99.8 3E-17 1E-21 168.3 25.7 256 267-542 54-360 (361)
173 1q7f_A NHL, brain tumor CG1071 99.8 3.3E-16 1.1E-20 154.4 31.4 241 307-561 30-281 (286)
174 2dg1_A DRP35, lactonase; beta 99.8 1.3E-16 4.3E-21 161.0 28.7 274 262-550 5-300 (333)
175 1q7f_A NHL, brain tumor CG1071 99.8 8.3E-16 2.9E-20 151.5 33.5 242 258-516 25-281 (286)
176 1qks_A Cytochrome CD1 nitrite 99.8 1.3E-15 4.4E-20 164.8 37.7 298 263-562 197-540 (567)
177 3fvz_A Peptidyl-glycine alpha- 99.8 8.6E-16 3E-20 155.2 30.5 243 262-515 23-322 (329)
178 3azo_A Aminopeptidase; POP fam 99.7 1.3E-16 4.4E-21 176.7 25.7 238 267-518 81-372 (662)
179 3e5z_A Putative gluconolactona 99.7 1.4E-15 4.9E-20 150.8 30.2 240 261-518 26-289 (296)
180 2z2n_A Virginiamycin B lyase; 99.7 2.2E-14 7.6E-19 141.4 38.6 278 261-560 13-295 (299)
181 3c5m_A Oligogalacturonate lyas 99.7 7.9E-17 2.7E-21 165.9 18.0 236 309-561 38-330 (396)
182 2xdw_A Prolyl endopeptidase; a 99.7 3E-15 1E-19 167.3 30.7 249 259-517 121-416 (710)
183 2dg1_A DRP35, lactonase; beta 99.7 3.2E-14 1.1E-18 143.3 35.3 233 261-502 43-299 (333)
184 1qks_A Cytochrome CD1 nitrite 99.7 1.6E-14 5.6E-19 156.1 34.8 273 272-561 165-478 (567)
185 2mad_H Methylamine dehydrogena 99.7 4.1E-14 1.4E-18 145.4 35.7 278 269-562 27-352 (373)
186 2xdw_A Prolyl endopeptidase; a 99.7 3E-15 1E-19 167.4 29.3 242 307-562 125-416 (710)
187 2gop_A Trilobed protease; beta 99.7 3.3E-15 1.1E-19 151.3 26.5 220 308-559 16-290 (347)
188 2qc5_A Streptogramin B lactona 99.7 3.1E-13 1.1E-17 133.2 37.5 280 261-559 18-299 (300)
189 3sjl_D Methylamine dehydrogena 99.7 9E-15 3.1E-19 149.1 26.7 281 268-562 38-365 (386)
190 2bkl_A Prolyl endopeptidase; m 99.7 3.9E-15 1.3E-19 166.0 26.0 275 272-561 77-398 (695)
191 3e5z_A Putative gluconolactona 99.7 3.5E-14 1.2E-18 140.8 29.4 242 298-559 19-285 (296)
192 3dsm_A Uncharacterized protein 99.7 5.1E-14 1.8E-18 142.2 29.9 256 283-559 16-301 (328)
193 3dsm_A Uncharacterized protein 99.7 4.6E-14 1.6E-18 142.5 29.2 248 262-525 43-311 (328)
194 2bkl_A Prolyl endopeptidase; m 99.7 3.7E-15 1.3E-19 166.2 22.6 260 250-518 107-400 (695)
195 1rwi_B Serine/threonine-protei 99.7 3.6E-14 1.2E-18 138.2 25.8 239 308-561 25-265 (270)
196 1rwi_B Serine/threonine-protei 99.7 3.2E-14 1.1E-18 138.6 25.4 239 264-517 25-266 (270)
197 3c75_H MADH, methylamine dehyd 99.6 5.6E-14 1.9E-18 145.7 27.1 277 272-562 82-404 (426)
198 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 4.1E-13 1.4E-17 133.6 31.7 241 263-515 18-299 (314)
199 3no2_A Uncharacterized protein 99.6 1.3E-13 4.5E-18 135.6 26.9 216 317-547 4-230 (276)
200 3no2_A Uncharacterized protein 99.6 2.7E-13 9.3E-18 133.3 28.3 247 273-536 4-272 (276)
201 1yr2_A Prolyl oligopeptidase; 99.6 9.2E-14 3.1E-18 156.1 27.5 275 272-561 116-442 (741)
202 1yr2_A Prolyl oligopeptidase; 99.6 1.8E-13 6.1E-18 153.7 27.6 256 251-518 150-444 (741)
203 2z2n_A Virginiamycin B lyase; 99.6 3.1E-12 1.1E-16 125.9 33.2 237 305-558 13-253 (299)
204 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 1.6E-12 5.4E-17 129.3 29.9 247 303-560 14-299 (314)
205 2mad_H Methylamine dehydrogena 99.6 1.1E-11 3.7E-16 127.3 35.0 237 267-521 70-356 (373)
206 3sjl_D Methylamine dehydrogena 99.6 4.6E-13 1.6E-17 136.5 23.3 254 267-540 82-384 (386)
207 3g4e_A Regucalcin; six bladed 99.5 8.7E-12 3E-16 123.7 29.9 230 261-502 11-261 (297)
208 3dr2_A Exported gluconolactona 99.5 6.2E-12 2.1E-16 125.3 28.4 227 261-502 43-296 (305)
209 3hrp_A Uncharacterized protein 99.5 6.9E-12 2.4E-16 130.5 29.4 238 262-513 130-408 (409)
210 3hrp_A Uncharacterized protein 99.5 4.5E-12 1.5E-16 131.9 27.4 237 308-558 132-408 (409)
211 2ghs_A AGR_C_1268P; regucalcin 99.5 6.4E-11 2.2E-15 119.2 33.8 225 264-502 50-291 (326)
212 2qc5_A Streptogramin B lactona 99.5 6.5E-11 2.2E-15 116.4 33.3 236 306-558 19-258 (300)
213 3g4e_A Regucalcin; six bladed 99.5 3.4E-11 1.2E-15 119.4 30.4 226 308-548 14-260 (297)
214 2ece_A 462AA long hypothetical 99.5 3.6E-11 1.2E-15 123.4 28.9 230 314-548 89-399 (462)
215 2qe8_A Uncharacterized protein 99.4 3.4E-12 1.1E-16 129.6 19.7 267 263-551 17-312 (343)
216 3iuj_A Prolyl endopeptidase; h 99.4 1.1E-11 3.9E-16 137.9 25.7 252 252-518 117-408 (693)
217 2ghs_A AGR_C_1268P; regucalcin 99.4 1.5E-10 5.1E-15 116.5 31.6 223 309-548 51-290 (326)
218 3dr2_A Exported gluconolactona 99.4 4.5E-11 1.5E-15 119.0 26.6 238 298-557 36-303 (305)
219 3c75_H MADH, methylamine dehyd 99.4 9.3E-12 3.2E-16 129.0 21.2 240 267-522 122-409 (426)
220 1mda_H Methylamine dehydrogena 99.4 6.4E-12 2.2E-16 128.1 18.7 256 285-562 47-348 (368)
221 1xip_A Nucleoporin NUP159; bet 99.4 8.6E-12 2.9E-16 127.6 19.7 174 264-453 39-231 (388)
222 1xip_A Nucleoporin NUP159; bet 99.4 1.1E-11 3.8E-16 126.7 18.0 174 353-547 39-231 (388)
223 1fwx_A Nitrous oxide reductase 99.4 1.1E-10 3.7E-15 124.0 24.3 227 316-549 99-407 (595)
224 3iuj_A Prolyl endopeptidase; h 99.3 4.3E-11 1.5E-15 133.2 21.9 240 306-561 128-406 (693)
225 2ece_A 462AA long hypothetical 99.3 2.4E-09 8.2E-14 109.9 29.4 230 269-501 88-399 (462)
226 1mda_H Methylamine dehydrogena 99.3 5E-11 1.7E-15 121.5 15.6 246 267-539 69-366 (368)
227 3q7m_A Lipoprotein YFGL, BAMB; 99.2 2.3E-08 7.7E-13 102.3 33.6 265 273-562 52-339 (376)
228 1kb0_A Quinohemoprotein alcoho 99.2 6.9E-10 2.4E-14 122.8 23.5 274 274-562 77-509 (677)
229 2hz6_A Endoplasmic reticulum t 99.2 2.2E-13 7.5E-18 139.9 -5.9 256 273-559 8-278 (369)
230 1kb0_A Quinohemoprotein alcoho 99.2 7.2E-09 2.5E-13 114.7 28.5 274 273-559 127-566 (677)
231 1yiq_A Quinohemoprotein alcoho 99.2 3.1E-09 1E-13 117.9 25.4 274 274-562 70-507 (689)
232 3q7m_A Lipoprotein YFGL, BAMB; 99.2 7.9E-08 2.7E-12 98.2 33.0 261 273-557 102-375 (376)
233 1npe_A Nidogen, entactin; glyc 99.2 1.2E-07 4.2E-12 91.9 32.7 253 274-542 1-263 (267)
234 1fwx_A Nitrous oxide reductase 99.1 2.2E-09 7.5E-14 114.0 20.7 238 272-517 99-433 (595)
235 2iwa_A Glutamine cyclotransfer 99.1 1.1E-08 3.7E-13 98.9 23.1 195 354-561 23-238 (266)
236 1yiq_A Quinohemoprotein alcoho 99.1 1.4E-08 4.7E-13 112.6 27.1 259 274-545 121-533 (689)
237 2qe8_A Uncharacterized protein 99.1 3.1E-09 1E-13 107.6 20.1 231 307-558 17-276 (343)
238 2fp8_A Strictosidine synthase; 99.1 1.3E-07 4.4E-12 94.5 30.1 245 308-561 20-314 (322)
239 2fp8_A Strictosidine synthase; 99.1 7.2E-08 2.5E-12 96.4 27.5 237 264-514 20-312 (322)
240 2iwa_A Glutamine cyclotransfer 99.1 6.7E-08 2.3E-12 93.3 25.9 205 298-516 11-238 (266)
241 1k3i_A Galactose oxidase precu 99.0 2.1E-08 7.2E-13 110.7 24.0 277 267-549 190-530 (656)
242 3nol_A Glutamine cyclotransfer 99.0 4.3E-08 1.5E-12 93.6 21.3 183 353-548 44-243 (262)
243 2hz6_A Endoplasmic reticulum t 99.0 4.2E-11 1.4E-15 122.8 0.4 183 362-562 8-194 (369)
244 3hxj_A Pyrrolo-quinoline quino 99.0 1.5E-08 5.1E-13 101.1 17.1 266 262-561 59-325 (330)
245 1npe_A Nidogen, entactin; glyc 99.0 4.8E-07 1.7E-11 87.6 27.5 228 319-561 2-239 (267)
246 2p4o_A Hypothetical protein; p 98.9 8.7E-07 3E-11 87.8 29.3 226 263-502 32-277 (306)
247 4a2l_A BT_4663, two-component 98.9 3.8E-06 1.3E-10 94.8 37.6 278 265-560 175-480 (795)
248 3hxj_A Pyrrolo-quinoline quino 98.9 1.2E-08 4E-13 101.8 15.1 259 266-558 23-282 (330)
249 2ad6_A Methanol dehydrogenase 98.9 1.8E-07 6E-12 101.3 25.0 274 274-562 62-496 (571)
250 3mbr_X Glutamine cyclotransfer 98.9 3E-07 1E-11 87.0 23.3 184 352-548 21-222 (243)
251 2p4o_A Hypothetical protein; p 98.9 2.1E-06 7.2E-11 85.0 29.4 227 307-550 32-278 (306)
252 4a2l_A BT_4663, two-component 98.9 5.5E-06 1.9E-10 93.4 35.8 276 261-559 308-613 (795)
253 1kv9_A Type II quinohemoprotei 98.9 3.5E-07 1.2E-11 101.0 24.8 274 274-562 66-490 (668)
254 3nok_A Glutaminyl cyclase; bet 98.8 4.6E-07 1.6E-11 86.6 21.4 181 354-548 57-253 (268)
255 3tc9_A Hypothetical hydrolase; 98.8 1.6E-06 5.5E-11 90.4 27.5 243 308-559 138-429 (430)
256 2xbg_A YCF48-like protein; pho 98.8 1.6E-05 5.4E-10 79.6 32.7 278 262-557 35-319 (327)
257 1w6s_A Methanol dehydrogenase 98.8 1.2E-06 4E-11 95.0 26.0 276 274-562 62-505 (599)
258 1kv9_A Type II quinohemoprotei 98.8 3.2E-06 1.1E-10 93.2 29.7 262 274-548 117-520 (668)
259 3nol_A Glutamine cyclotransfer 98.8 2.8E-06 9.5E-11 81.1 25.1 181 309-502 45-244 (262)
260 3v9f_A Two-component system se 98.8 1.4E-05 4.7E-10 90.0 34.3 284 262-560 257-568 (781)
261 3nok_A Glutaminyl cyclase; bet 98.7 2.2E-06 7.6E-11 81.8 22.4 179 263-453 55-253 (268)
262 4hw6_A Hypothetical protein, I 98.7 6.3E-06 2.1E-10 85.9 27.7 244 308-559 140-432 (433)
263 3mbr_X Glutamine cyclotransfer 98.7 7.6E-06 2.6E-10 77.4 25.3 184 307-502 21-223 (243)
264 2xe4_A Oligopeptidase B; hydro 98.7 3.3E-06 1.1E-10 94.5 26.8 200 260-464 170-398 (751)
265 2xe4_A Oligopeptidase B; hydro 98.7 3.4E-06 1.2E-10 94.4 26.1 153 308-466 175-354 (751)
266 2ad6_A Methanol dehydrogenase 98.7 1.2E-05 4.3E-10 86.8 28.7 258 274-545 115-522 (571)
267 3v9f_A Two-component system se 98.6 4E-05 1.4E-09 86.1 33.5 281 261-559 311-610 (781)
268 1k3i_A Galactose oxidase precu 98.6 8.9E-07 3E-11 97.6 18.7 247 310-560 189-497 (656)
269 1flg_A Protein (quinoprotein e 98.6 5.9E-05 2E-09 81.6 32.6 234 318-562 117-518 (582)
270 3qqz_A Putative uncharacterize 98.6 3.6E-05 1.2E-09 73.7 26.8 206 345-557 21-250 (255)
271 3kya_A Putative phosphatase; s 98.6 2.5E-05 8.5E-10 81.9 27.7 249 309-560 141-475 (496)
272 3v64_C Agrin; beta propeller, 98.6 0.00011 3.8E-09 74.1 31.6 239 263-518 34-278 (349)
273 1ijq_A LDL receptor, low-densi 98.6 0.00012 4.2E-09 72.6 31.4 227 320-561 3-239 (316)
274 1flg_A Protein (quinoprotein e 98.5 5.3E-05 1.8E-09 81.9 30.0 261 274-546 117-546 (582)
275 3qqz_A Putative uncharacterize 98.5 5.8E-05 2E-09 72.2 26.3 198 304-513 24-251 (255)
276 1w6s_A Methanol dehydrogenase 98.5 3.3E-05 1.1E-09 83.6 27.5 265 268-546 111-533 (599)
277 3tc9_A Hypothetical hydrolase; 98.5 5.4E-05 1.9E-09 78.7 28.3 238 263-514 137-429 (430)
278 3v65_B Low-density lipoprotein 98.5 0.00015 5.1E-09 74.2 31.2 240 264-520 78-323 (386)
279 3v64_C Agrin; beta propeller, 98.5 0.00025 8.7E-09 71.4 31.7 231 310-558 37-273 (349)
280 4hw6_A Hypothetical protein, I 98.5 7.1E-05 2.4E-09 77.9 27.5 236 263-514 139-432 (433)
281 1ijq_A LDL receptor, low-densi 98.4 0.0013 4.5E-08 65.1 33.8 228 276-517 3-240 (316)
282 3amr_A 3-phytase; beta-propell 98.4 0.00011 3.6E-09 73.2 24.7 188 273-465 39-262 (355)
283 3p5b_L Low density lipoprotein 98.4 0.00047 1.6E-08 70.8 30.2 228 320-561 85-321 (400)
284 3v65_B Low-density lipoprotein 98.4 0.00022 7.6E-09 72.9 27.6 231 311-558 81-316 (386)
285 3sov_A LRP-6, low-density lipo 98.3 0.0006 2.1E-08 67.7 29.5 230 276-518 6-241 (318)
286 3p5b_L Low density lipoprotein 98.3 0.0016 5.6E-08 66.8 32.9 234 275-519 84-324 (400)
287 2xzh_A Clathrin heavy chain 1; 98.3 0.0013 4.4E-08 64.2 29.1 219 328-562 49-292 (365)
288 3a9g_A Putative uncharacterize 98.3 0.00072 2.5E-08 68.2 29.0 234 307-548 29-330 (354)
289 2xbg_A YCF48-like protein; pho 98.3 0.0012 4E-08 65.8 29.8 233 306-554 35-273 (327)
290 3sov_A LRP-6, low-density lipo 98.2 0.00062 2.1E-08 67.6 26.9 229 320-562 6-240 (318)
291 2ism_A Putative oxidoreductase 98.2 0.00037 1.3E-08 70.3 25.5 231 307-548 31-333 (352)
292 2p9w_A MAL S 1 allergenic prot 98.2 0.00028 9.5E-09 69.5 22.6 204 263-467 13-266 (334)
293 3sre_A PON1, serum paraoxonase 98.2 0.00038 1.3E-08 70.0 23.5 196 264-464 51-296 (355)
294 2ism_A Putative oxidoreductase 98.2 0.00045 1.5E-08 69.7 24.3 230 264-502 32-334 (352)
295 3kya_A Putative phosphatase; s 98.2 0.0016 5.4E-08 68.2 28.9 241 264-518 140-478 (496)
296 1bpo_A Protein (clathrin); cla 98.2 0.0035 1.2E-07 63.6 29.9 220 327-562 47-291 (494)
297 2g8s_A Glucose/sorbosone dehyd 98.1 0.0015 5.1E-08 65.9 27.2 244 308-558 19-350 (353)
298 2p9w_A MAL S 1 allergenic prot 98.1 0.0013 4.5E-08 64.8 25.5 207 302-514 8-264 (334)
299 3m0c_C LDL receptor, low-densi 98.1 0.0037 1.3E-07 69.8 32.3 231 276-517 397-634 (791)
300 3amr_A 3-phytase; beta-propell 98.1 0.0008 2.7E-08 66.9 23.5 196 317-522 39-271 (355)
301 3m0c_C LDL receptor, low-densi 98.1 0.0027 9.1E-08 70.9 30.3 227 320-561 397-633 (791)
302 3a9g_A Putative uncharacterize 98.1 0.0015 5E-08 66.0 25.7 232 263-501 29-330 (354)
303 3s94_A LRP-6, low-density lipo 98.0 0.02 6.8E-07 62.2 35.6 200 262-467 39-244 (619)
304 3ii7_A Kelch-like protein 7; p 98.0 0.00073 2.5E-08 66.3 22.1 232 274-517 12-274 (306)
305 2vpj_A Kelch-like protein 12; 98.0 0.00074 2.5E-08 66.1 21.5 232 273-517 14-280 (301)
306 3sbq_A Nitrous-oxide reductase 97.9 0.0039 1.3E-07 65.0 26.1 233 276-515 72-408 (638)
307 2xn4_A Kelch-like protein 2; s 97.9 0.0021 7E-08 62.9 23.2 233 274-518 16-279 (302)
308 3s25_A Hypothetical 7-bladed b 97.9 0.0086 3E-07 58.8 27.4 242 271-554 22-287 (302)
309 3ii7_A Kelch-like protein 7; p 97.9 0.0053 1.8E-07 60.1 25.8 228 320-560 14-272 (306)
310 4a0p_A LRP6, LRP-6, low-densit 97.9 0.015 5.3E-07 63.1 31.5 227 320-562 8-239 (628)
311 2vpj_A Kelch-like protein 12; 97.9 0.0031 1.1E-07 61.5 23.7 220 328-560 31-278 (301)
312 4asc_A Kelch repeat and BTB do 97.8 0.0017 5.9E-08 64.0 21.1 230 276-517 7-279 (315)
313 3ei3_A DNA damage-binding prot 97.8 0.024 8.3E-07 65.9 33.5 282 262-559 513-872 (1158)
314 1n7d_A LDL receptor, low-densi 97.8 7.2E-05 2.4E-09 82.8 11.7 220 327-559 385-613 (699)
315 2xn4_A Kelch-like protein 2; s 97.8 0.0031 1.1E-07 61.6 22.5 229 319-560 17-276 (302)
316 3das_A Putative oxidoreductase 97.8 0.017 5.8E-07 57.7 27.3 241 307-551 32-330 (347)
317 1zgk_A Kelch-like ECH-associat 97.8 0.0016 5.5E-08 64.0 19.8 232 273-517 24-289 (308)
318 1cru_A Protein (soluble quinop 97.8 0.031 1.1E-06 58.1 30.4 106 307-412 27-163 (454)
319 1n7d_A LDL receptor, low-densi 97.8 0.00018 6E-09 79.6 13.7 228 283-523 385-622 (699)
320 2g8s_A Glucose/sorbosone dehyd 97.8 0.0056 1.9E-07 61.6 23.8 228 264-501 19-341 (353)
321 3das_A Putative oxidoreductase 97.8 0.02 6.8E-07 57.1 27.4 236 263-502 32-327 (347)
322 3s94_A LRP-6, low-density lipo 97.7 0.015 5.3E-07 63.0 27.4 223 326-562 16-245 (619)
323 4a0p_A LRP6, LRP-6, low-densit 97.7 0.096 3.3E-06 56.8 40.2 197 263-467 37-238 (628)
324 3sre_A PON1, serum paraoxonase 97.7 0.0047 1.6E-07 62.0 21.0 183 354-550 52-287 (355)
325 1zgk_A Kelch-like ECH-associat 97.6 0.0084 2.9E-07 58.8 22.5 229 317-560 24-287 (308)
326 4asc_A Kelch repeat and BTB do 97.6 0.0078 2.7E-07 59.2 22.0 211 328-550 13-253 (315)
327 2woz_A Kelch repeat and BTB do 97.6 0.012 4E-07 58.0 23.2 231 276-518 18-290 (318)
328 3ei3_A DNA damage-binding prot 97.6 0.13 4.5E-06 59.8 35.0 278 264-559 605-954 (1158)
329 3s25_A Hypothetical 7-bladed b 97.6 0.017 5.9E-07 56.6 23.3 200 314-548 21-241 (302)
330 2uvk_A YJHT; unknown function, 97.5 0.0061 2.1E-07 61.1 20.0 242 273-525 19-352 (357)
331 2woz_A Kelch repeat and BTB do 97.5 0.016 5.6E-07 56.9 22.2 220 329-560 25-287 (318)
332 2xzh_A Clathrin heavy chain 1; 97.5 0.095 3.2E-06 51.2 29.5 236 267-518 71-335 (365)
333 2uvk_A YJHT; unknown function, 97.5 0.0066 2.3E-07 60.8 19.1 234 317-561 19-343 (357)
334 1xi4_A Clathrin heavy chain; a 97.4 0.0062 2.1E-07 70.4 20.1 220 327-562 47-291 (1630)
335 1bpo_A Protein (clathrin); cla 97.4 0.16 5.5E-06 51.6 30.0 238 266-518 69-334 (494)
336 1cru_A Protein (soluble quinop 97.3 0.065 2.2E-06 55.7 25.2 108 264-371 28-163 (454)
337 2zwa_A Leucine carboxyl methyl 97.2 0.015 5E-07 64.2 19.5 192 272-467 396-636 (695)
338 2be1_A Serine/threonine-protei 97.1 0.0074 2.5E-07 60.0 15.0 143 319-463 11-181 (339)
339 3pbp_A Nucleoporin NUP82; beta 97.1 0.041 1.4E-06 55.8 20.3 143 316-461 30-207 (452)
340 3ott_A Two-component system se 97.1 0.56 1.9E-05 51.9 34.1 271 262-557 62-349 (758)
341 2zwa_A Leucine carboxyl methyl 97.0 0.041 1.4E-06 60.6 21.3 233 316-549 396-674 (695)
342 2wg3_C Hedgehog-interacting pr 97.0 0.41 1.4E-05 49.7 27.2 248 308-559 15-370 (463)
343 3pbp_A Nucleoporin NUP82; beta 96.9 0.073 2.5E-06 54.0 20.0 150 357-511 26-208 (452)
344 3ott_A Two-component system se 96.8 0.88 3E-05 50.3 35.1 276 262-558 323-624 (758)
345 1tl2_A L10, protein (tachylect 96.5 0.072 2.4E-06 49.1 15.0 183 364-560 5-208 (236)
346 1xi4_A Clathrin heavy chain; a 96.3 0.22 7.5E-06 57.9 20.7 258 283-559 47-330 (1630)
347 1tl2_A L10, protein (tachylect 96.3 0.15 5E-06 47.0 15.5 142 353-500 42-199 (236)
348 2wg3_C Hedgehog-interacting pr 96.2 1.4 4.6E-05 45.7 28.2 236 264-501 15-354 (463)
349 2be1_A Serine/threonine-protei 96.1 0.046 1.6E-06 54.2 12.3 112 363-479 10-138 (339)
350 3sbq_A Nitrous-oxide reductase 96.1 1.3 4.3E-05 46.5 23.1 232 321-559 73-407 (638)
351 3b7f_A Glycosyl hydrolase, BNR 96.0 0.86 2.9E-05 45.9 21.7 189 262-453 54-296 (394)
352 3b7f_A Glycosyl hydrolase, BNR 95.0 3.2 0.00011 41.6 29.5 273 275-554 23-366 (394)
353 1wp5_A Topoisomerase IV; broke 94.4 4.1 0.00014 39.8 26.4 243 316-560 3-277 (323)
354 3q6k_A 43.2 kDa salivary prote 92.3 10 0.00034 37.9 22.4 172 329-501 124-342 (381)
355 1suu_A DNA gyrase subunit A; t 92.1 9.1 0.00031 37.1 29.7 197 271-467 5-232 (312)
356 4hvt_A Ritya.17583.B, post-pro 92.0 16 0.00056 39.8 23.3 239 264-514 130-429 (711)
357 3l6v_A GYRA, DNA gyrase subuni 91.3 13 0.00043 37.1 28.5 198 270-467 3-266 (370)
358 3uc1_A DNA gyrase subunit A; D 91.3 12 0.0004 36.6 24.2 238 319-560 4-279 (327)
359 3kci_A Probable E3 ubiquitin-p 91.2 13 0.00045 37.1 28.8 235 317-561 61-346 (389)
360 3no0_A DNA gyrase subunit A; D 90.6 12 0.0004 35.6 26.0 203 306-515 23-246 (276)
361 3qhy_B Beta-lactamase inhibito 90.5 12 0.00042 35.5 19.4 223 308-562 25-248 (282)
362 3l6v_A GYRA, DNA gyrase subuni 89.2 19 0.00065 35.8 25.5 239 315-559 4-315 (370)
363 1zi0_A DNA gyrase subunit A; b 88.9 17 0.00059 35.0 26.9 240 317-560 2-277 (307)
364 1suu_A DNA gyrase subunit A; t 88.8 18 0.00061 35.0 29.6 240 316-559 6-282 (312)
365 1zi0_A DNA gyrase subunit A; b 88.3 19 0.00064 34.7 29.3 241 272-515 1-277 (307)
366 4hvt_A Ritya.17583.B, post-pro 88.3 32 0.0011 37.4 23.7 237 314-559 137-429 (711)
367 3kci_A Probable E3 ubiquitin-p 87.3 25 0.00085 35.0 21.6 193 363-561 62-294 (389)
368 1wp5_A Topoisomerase IV; broke 86.3 26 0.00087 34.1 30.2 194 272-466 3-225 (323)
369 3uc1_A DNA gyrase subunit A; D 86.0 27 0.00091 34.0 27.7 238 275-515 4-279 (327)
370 4gq2_M Nucleoporin NUP120; bet 82.0 73 0.0025 36.0 29.1 38 394-431 237-274 (950)
371 3q6k_A 43.2 kDa salivary prote 76.5 63 0.0022 32.1 28.4 169 285-453 124-341 (381)
372 1sqj_A OXG-RCBH, oligoxylogluc 74.4 1.1E+02 0.0037 33.7 22.5 155 262-417 14-195 (789)
373 3no0_A DNA gyrase subunit A; D 69.0 77 0.0026 29.8 26.2 200 353-560 25-246 (276)
374 3qhy_B Beta-lactamase inhibito 68.2 80 0.0027 29.7 19.1 239 264-540 25-264 (282)
375 1sqj_A OXG-RCBH, oligoxylogluc 59.7 2E+02 0.007 31.4 25.4 149 306-456 14-190 (789)
376 4a9v_A PHOX; hydrolase, beta-p 59.6 38 0.0013 35.7 9.7 61 394-454 477-549 (592)
377 4fhn_B Nucleoporin NUP120; pro 58.5 64 0.0022 37.2 12.6 38 394-431 239-276 (1139)
378 3zwu_A Alkaline phosphatase PH 58.3 32 0.0011 36.5 9.1 59 395-453 478-548 (592)
379 3zwu_A Alkaline phosphatase PH 54.2 36 0.0012 36.1 8.7 58 353-410 477-548 (592)
380 4gq2_M Nucleoporin NUP120; bet 51.7 3E+02 0.01 30.9 20.0 33 530-562 236-268 (950)
381 4a9v_A PHOX; hydrolase, beta-p 51.3 59 0.002 34.3 9.5 60 352-411 476-549 (592)
382 3hx6_A Type 4 fimbrial biogene 51.3 2.3E+02 0.008 29.6 14.0 154 404-560 85-284 (570)
383 1zvt_A Topoisomerase IV subuni 44.5 1.9E+02 0.0066 26.6 15.3 148 406-561 4-164 (256)
384 1zvt_A Topoisomerase IV subuni 43.3 2E+02 0.0069 26.5 17.4 147 275-423 3-163 (256)
385 3mvd_K Regulator of chromosome 41.1 2.7E+02 0.0094 27.4 22.2 192 357-563 78-325 (423)
386 4fhn_B Nucleoporin NUP120; pro 37.5 1.6E+02 0.0054 34.0 11.4 32 531-562 239-270 (1139)
387 2cn3_A Xyloglucanase, beta-1,4 37.0 4.3E+02 0.015 28.5 24.2 101 395-502 385-496 (737)
388 3mez_B Mannose-specific lectin 36.9 1.5E+02 0.0052 23.3 10.4 26 439-466 59-84 (113)
389 3f7f_A Nucleoporin NUP120; nuc 32.3 2E+02 0.007 31.0 10.3 69 438-515 224-305 (729)
390 3f7f_A Nucleoporin NUP120; nuc 30.4 67 0.0023 34.8 6.1 36 395-432 224-259 (729)
391 2cn3_A Xyloglucanase, beta-1,4 29.1 5.7E+02 0.019 27.5 26.2 63 307-369 23-90 (737)
392 4h3o_A Lectin; cadmium, plant 24.4 2.5E+02 0.0084 21.7 10.7 47 486-547 53-99 (105)
393 3twe_A Alpha4H; unknown functi 23.2 20 0.00069 19.6 0.3 9 152-160 14-22 (27)
394 3a0c_A Mannose/sialic acid-bin 20.2 3.1E+02 0.01 21.3 10.6 44 440-498 54-97 (110)
No 1
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=9.4e-44 Score=360.38 Aligned_cols=288 Identities=18% Similarity=0.196 Sum_probs=257.2
Q ss_pred CCCCCCCeeEEEEcCC----CCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEE
Q 043172 258 DESSTGPINSVQFHRN----AQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSL 333 (564)
Q Consensus 258 ~~~h~~~V~~l~fspd----g~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iw 333 (564)
..+|.++|++|+|+|+ +.+|+||+.|++|+||++..........+.+|...|.+++|+|++..+++++.|+.|++|
T Consensus 28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lW 107 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLW 107 (321)
T ss_dssp TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 4579999999999985 679999999999999999865545566788999999999999999999999999999999
Q ss_pred ECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEeC
Q 043172 334 DLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGG 412 (564)
Q Consensus 334 dl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~ 412 (564)
|+.+++.... +..+.. .+.+++|+|++++|++++.+|.|++|++.+++....+. +...|.+++|+|++++|++++.
T Consensus 108 d~~~~~~~~~--~~~~~~-~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~ 184 (321)
T 3ow8_A 108 DLENGKQIKS--IDAGPV-DAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAI 184 (321)
T ss_dssp ETTTTEEEEE--EECCTT-CCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred ECCCCCEEEE--EeCCCc-cEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcC
Confidence 9999876443 444443 57889999999999999999999999999999888877 6778999999999999999999
Q ss_pred CCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcC
Q 043172 413 DGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNN 492 (564)
Q Consensus 413 dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fsp 492 (564)
||.|++||+++++++..+..+ ...+.+++|+|++++|++|+.||.|+|||++.. ..+.++.+|...|.+++|+|
T Consensus 185 dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~-----~~~~~~~~h~~~v~~~~~sp 258 (321)
T 3ow8_A 185 DGIINIFDIATGKLLHTLEGH-AMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA-----NLAGTLSGHASWVLNVAFCP 258 (321)
T ss_dssp TSCEEEEETTTTEEEEEECCC-SSCCCEEEECTTSCEEEEECTTSCEEEEETTTC-----CEEEEECCCSSCEEEEEECT
T ss_pred CCeEEEEECCCCcEEEEEccc-CCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc-----ceeEEEcCCCCceEEEEECC
Confidence 999999999999988887654 447899999999999999999999999999887 78889999999999999999
Q ss_pred CCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q 043172 493 DAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLN 559 (564)
Q Consensus 493 dg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~ 559 (564)
++.+|++++. |+.|+||++.++..+..+. .|...|++++|+|++.+|++++.||.|+||++.
T Consensus 259 ~~~~l~s~s~--D~~v~iwd~~~~~~~~~~~---~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 259 DDTHFVSSSS--DKSVKVWDVGTRTCVHTFF---DHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp TSSEEEEEET--TSCEEEEETTTTEEEEEEC---CCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CCCEEEEEeC--CCcEEEEeCCCCEEEEEEc---CCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 9999999999 9999999999998887664 355789999999999999999999999999974
No 2
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=7.3e-44 Score=373.65 Aligned_cols=286 Identities=15% Similarity=0.227 Sum_probs=259.8
Q ss_pred CCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCC
Q 043172 258 DESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVK 337 (564)
Q Consensus 258 ~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~ 337 (564)
..+|.++|++++|+|++++|++|+.|++|+||++.. ......+.+|..+|.+++|+|++++|++|+.|+.|++||+.+
T Consensus 104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~--~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~ 181 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYET--GDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG 181 (410)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTT--CCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC--CcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence 457999999999999999999999999999999874 456778899999999999999999999999999999999998
Q ss_pred CceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEeCCCeE
Q 043172 338 AKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQV 416 (564)
Q Consensus 338 ~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~V 416 (564)
+... ..+.+|.. .|.+++|+|++.+|++++.|+.|++||+.++.++..+. |...|.+++|+|++.+|++++.|++|
T Consensus 182 ~~~~--~~~~~h~~-~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v 258 (410)
T 1vyh_C 182 FECI--RTMHGHDH-NVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV 258 (410)
T ss_dssp SCEE--ECCCCCSS-CEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred Ccee--EEEcCCCC-CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeE
Confidence 8764 34666665 79999999999999999999999999999999998888 88899999999999999999999999
Q ss_pred EEEECCCCceeEEEeecCCcceEEEEECCC--------------------CCEEEEEeCCCcEEEEeCCcccCCcceeeE
Q 043172 417 YHWDLRTRTCIHRAVDEGCINGTALCTSPD--------------------GTFFAAGSDSGIVNVYNRQEFLGGKRKPIK 476 (564)
Q Consensus 417 ~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~--------------------g~~lasgs~dg~V~iwd~~~~~~~~~~~~~ 476 (564)
++||+.++.+...+..+. ..+.+++|+|+ +.+|++|+.||.|++||+.++ .++.
T Consensus 259 ~vwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~-----~~~~ 332 (410)
T 1vyh_C 259 RVWVVATKECKAELREHR-HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG-----MCLM 332 (410)
T ss_dssp EEEETTTCCEEEEECCCS-SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT-----EEEE
T ss_pred EEEECCCCceeeEecCCC-ceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC-----ceEE
Confidence 999999999888776544 47899999996 679999999999999999987 8899
Q ss_pred EccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEE
Q 043172 477 TIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLY 556 (564)
Q Consensus 477 ~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw 556 (564)
++.+|...|++++|+|+|++|++++. |+.|++|++.++..+..+. .|...|++++|+|++.+|++|+.||+|+||
T Consensus 333 ~~~~h~~~v~~v~~~~~g~~l~s~s~--D~~i~vwd~~~~~~~~~~~---~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW 407 (410)
T 1vyh_C 333 TLVGHDNWVRGVLFHSGGKFILSCAD--DKTLRVWDYKNKRCMKTLN---AHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407 (410)
T ss_dssp EEECCSSCEEEEEECSSSSCEEEEET--TTEEEEECCTTSCCCEEEE---CCSSCEEEEEECSSSSCEEEEETTSEEEEE
T ss_pred EEECCCCcEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCceEEEEc---CCCCcEEEEEEcCCCCEEEEEeCCCcEEEE
Confidence 99999999999999999999999998 9999999999887766553 456789999999999999999999999999
Q ss_pred EcC
Q 043172 557 KLN 559 (564)
Q Consensus 557 ~l~ 559 (564)
+++
T Consensus 408 ~~r 410 (410)
T 1vyh_C 408 ECR 410 (410)
T ss_dssp C--
T ss_pred eCC
Confidence 864
No 3
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.1e-42 Score=355.07 Aligned_cols=287 Identities=18% Similarity=0.263 Sum_probs=253.1
Q ss_pred cCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEEC
Q 043172 256 NADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDL 335 (564)
Q Consensus 256 ~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl 335 (564)
.+..+|.++|++++|+|++++|++|+.||+|+||++.. ...+..+..|...|.+++|+|++++|++++.++.+++|++
T Consensus 49 ~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~ 126 (340)
T 1got_B 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYT--TNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL 126 (340)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT--CCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred eeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCC--CCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 34568999999999999999999999999999999874 4577888899999999999999999999999999999999
Q ss_pred CCCce--eeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEeC
Q 043172 336 VKAKA--DKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGG 412 (564)
Q Consensus 336 ~~~~~--~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~ 412 (564)
.++.. .....+.+|.. .|.++.|++++. +++++.|+.|++||+.+++.+..+. |.+.|.+++|+|++++|++|+.
T Consensus 127 ~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~ 204 (340)
T 1got_B 127 KTREGNVRVSRELAGHTG-YLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGAC 204 (340)
T ss_dssp TTCSBSCEEEEEEECCSS-CEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred ccCCCcceeEEEecCCCc-cEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeC
Confidence 87632 22334556654 799999998875 8889999999999999999998888 8899999999999999999999
Q ss_pred CCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEcc--ccccceeEEEE
Q 043172 413 DGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIE--NLTTKVDFMKF 490 (564)
Q Consensus 413 dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~--~~~~~I~~l~f 490 (564)
|+.|++||++++.++..+..+. ..|++++|+|++++|++|+.||.|+|||++.. .++..+. .+...|++++|
T Consensus 205 d~~v~~wd~~~~~~~~~~~~h~-~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~-----~~~~~~~~~~~~~~v~~~~~ 278 (340)
T 1got_B 205 DASAKLWDVREGMCRQTFTGHE-SDINAICFFPNGNAFATGSDDATCRLFDLRAD-----QELMTYSHDNIICGITSVSF 278 (340)
T ss_dssp TSCEEEEETTTCSEEEEECCCS-SCEEEEEECTTSSEEEEEETTSCEEEEETTTT-----EEEEEECCTTCCSCEEEEEE
T ss_pred CCcEEEEECCCCeeEEEEcCCc-CCEEEEEEcCCCCEEEEEcCCCcEEEEECCCC-----cEEEEEccCCcccceEEEEE
Confidence 9999999999999888876554 47999999999999999999999999999876 5655554 33457999999
Q ss_pred cCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEE
Q 043172 491 NNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYK 557 (564)
Q Consensus 491 spdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~ 557 (564)
+|+|++|++|+. |+.|++|++.++.....+. +|.+.|++++|+|+|.+|++|+.||.|+||+
T Consensus 279 s~~g~~l~~g~~--d~~i~vwd~~~~~~~~~~~---~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 279 SKSGRLLLAGYD--DFNCNVWDALKADRAGVLA---GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CTTSSEEEEEET--TSEEEEEETTTCCEEEEEE---CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCCCEEEEECC--CCeEEEEEcccCcEeeEee---cCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 999999999998 9999999999888776553 4568899999999999999999999999996
No 4
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.4e-42 Score=348.75 Aligned_cols=287 Identities=17% Similarity=0.249 Sum_probs=252.4
Q ss_pred CCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCC
Q 043172 258 DESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVK 337 (564)
Q Consensus 258 ~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~ 337 (564)
..+|.+.|++|+|||++++|++|+.||+|+||++. +...+..+..|..+|.+++|+|++++|++++.|+.|++||+.+
T Consensus 9 ~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~ 86 (304)
T 2ynn_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYE--TQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT 86 (304)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETT--TTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT
T ss_pred ecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECC--CCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence 45699999999999999999999999999999987 4457788899999999999999999999999999999999999
Q ss_pred CceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-EEEEee-ecCcEEEEEEec-CCCEEEEEeCCC
Q 043172 338 AKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKE-LIGTLK-MNGTVRSLAFAD-DGKQLLSSGGDG 414 (564)
Q Consensus 338 ~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~-~~~~~~-~~~~V~~l~~sp-dg~~l~s~s~dg 414 (564)
++... .+.+|.. .|.+++|+|++.+|++++.||.|++||+.++. ....+. |...|.+++|+| ++..|++|+.|+
T Consensus 87 ~~~~~--~~~~h~~-~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~ 163 (304)
T 2ynn_A 87 GEKVV--DFEAHPD-YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR 163 (304)
T ss_dssp CCEEE--EEECCSS-CEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTS
T ss_pred CcEEE--EEeCCCC-cEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCC
Confidence 88643 4666665 79999999999999999999999999999874 445555 889999999999 678999999999
Q ss_pred eEEEEECCCCceeEEEeecCCcceEEEEECC--CCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcC
Q 043172 415 QVYHWDLRTRTCIHRAVDEGCINGTALCTSP--DGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNN 492 (564)
Q Consensus 415 ~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp--~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fsp 492 (564)
+|++||++++.....+...+...+..++|+| ++.+|++|+.||.|+|||+++. +++.++.+|...|++++|+|
T Consensus 164 ~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~-----~~~~~~~~h~~~v~~~~~~p 238 (304)
T 2ynn_A 164 TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK-----SCVATLEGHMSNVSFAVFHP 238 (304)
T ss_dssp EEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT-----EEEEEEECCSSCEEEEEECS
T ss_pred eEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC-----ccceeeCCCCCCEEEEEECC
Confidence 9999999988877777666656788888886 6789999999999999999987 89999999999999999999
Q ss_pred CCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCC--EEEEEcCCCeEEEEEcCC
Q 043172 493 DAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGG--FMAVGNAAGKVFLYKLNH 560 (564)
Q Consensus 493 dg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~--~Lasgs~dG~V~lw~l~~ 560 (564)
++++|++++. |+.|+||++.+++....+.. +...+.+++|+|++. ++++|+.+| +.+|++..
T Consensus 239 ~~~~l~s~s~--Dg~i~iWd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~~ 302 (304)
T 2ynn_A 239 TLPIIISGSE--DGTLKIWNSSTYKVEKTLNV---GLERSWCIATHPTGRKNYIASGFDNG-FTVLSLGN 302 (304)
T ss_dssp SSSEEEEEET--TSCEEEEETTTCCEEEEECC---SSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC-
T ss_pred CCCEEEEEcC--CCeEEEEECCCCceeeeccC---CCccEEEEEECCCCCceEEEEecCCc-eEEEEecc
Confidence 9999999999 99999999999988876643 447899999999875 688887666 77787753
No 5
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.2e-41 Score=349.80 Aligned_cols=287 Identities=14% Similarity=0.210 Sum_probs=250.6
Q ss_pred CCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECC
Q 043172 257 ADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLV 336 (564)
Q Consensus 257 ~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~ 336 (564)
...+|.++|++|+|+|++++|+||+.|++|+||+... ......+..|...|.+++|+|+|.+|++++.|+.+++|++.
T Consensus 59 ~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~--~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~ 136 (354)
T 2pbi_B 59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFT--TNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLT 136 (354)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--CCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECC
T ss_pred EecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCC--CCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEe
Confidence 3567999999999999999999999999999999764 44667788889999999999999999999999999999987
Q ss_pred CCce----eeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEec--CCCEEEE
Q 043172 337 KAKA----DKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFAD--DGKQLLS 409 (564)
Q Consensus 337 ~~~~----~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~sp--dg~~l~s 409 (564)
.... .....+.+|.. .|.+++|+|++..|++++.|+.|++||+.+++.+..+. |...|.+++|+| ++++|++
T Consensus 137 ~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~s 215 (354)
T 2pbi_B 137 FDKNENMAAKKKSVAMHTN-YLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVS 215 (354)
T ss_dssp CCTTCCSGGGCEEEEECSS-CEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEE
T ss_pred ccccccccccceeeeccCC-cEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEE
Confidence 5421 11223445544 79999999999999999999999999999999999988 889999999988 5789999
Q ss_pred EeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccc--cccceeE
Q 043172 410 SGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIEN--LTTKVDF 487 (564)
Q Consensus 410 ~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~--~~~~I~~ 487 (564)
|+.||.|++||+++++++..+..+. ..|.+++|+|++.+|++|+.||+|++||++.. ..+..+.. +...+++
T Consensus 216 gs~Dg~v~~wd~~~~~~~~~~~~h~-~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~-----~~~~~~~~~~~~~~~~~ 289 (354)
T 2pbi_B 216 GGCDKKAMVWDMRSGQCVQAFETHE-SDVNSVRYYPSGDAFASGSDDATCRLYDLRAD-----REVAIYSKESIIFGASS 289 (354)
T ss_dssp EETTSCEEEEETTTCCEEEEECCCS-SCEEEEEECTTSSEEEEEETTSCEEEEETTTT-----EEEEEECCTTCCSCEEE
T ss_pred EeCCCeEEEEECCCCcEEEEecCCC-CCeEEEEEeCCCCEEEEEeCCCeEEEEECCCC-----cEEEEEcCCCcccceeE
Confidence 9999999999999999988776544 47999999999999999999999999999876 55555543 3457899
Q ss_pred EEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEE
Q 043172 488 MKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYK 557 (564)
Q Consensus 488 l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~ 557 (564)
++|+|+|++|++++. |+.|++|++.++..+..+. +|.+.|++++|+|+|.+|++|+.||+|+||+
T Consensus 290 ~~~s~~g~~l~~g~~--d~~i~vwd~~~~~~~~~l~---~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 290 VDFSLSGRLLFAGYN--DYTINVWDVLKGSRVSILF---GHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEECTTSSEEEEEET--TSCEEEEETTTCSEEEEEC---CCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEeCCCCEEEEEEC--CCcEEEEECCCCceEEEEE---CCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 999999999999998 9999999999888776543 4668899999999999999999999999995
No 6
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.2e-42 Score=360.50 Aligned_cols=301 Identities=17% Similarity=0.216 Sum_probs=255.5
Q ss_pred eecccCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEE
Q 043172 252 LIDANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFY 331 (564)
Q Consensus 252 l~~~~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~ 331 (564)
+....+..+|.++|++++|+|++++|++|+.|++|+||++. ....+..+..|...|.+++|+|+|++|++++.|+.++
T Consensus 56 ~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~--~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~ 133 (380)
T 3iz6_a 56 LVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNAL--TSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACS 133 (380)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETT--TTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCE
T ss_pred eEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECC--CCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEE
Confidence 33344567899999999999999999999999999999987 4457788899999999999999999999999999999
Q ss_pred EEECCCCce-----eeeccccccCCcceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCcEEEEee------ecCcEEEEE
Q 043172 332 SLDLVKAKA-----DKIGPLVGREEKSLEFFEVSPD-SSVIAFVGNEGYILLVSSKTKELIGTLK------MNGTVRSLA 399 (564)
Q Consensus 332 iwdl~~~~~-----~~~~~~~~~~~~~v~~~~~spd-g~~la~~~~dg~I~lwd~~t~~~~~~~~------~~~~V~~l~ 399 (564)
+|++.+... .....+.+|.. .+.++.|+|+ +..|++++.|+.|++||+.+++.+..+. |...|.+++
T Consensus 134 iw~~~~~~~~~~~~~~~~~~~gh~~-~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~ 212 (380)
T 3iz6_a 134 IFNLSSQADRDGNMPVSRVLTGHKG-YASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLS 212 (380)
T ss_dssp EEECCCCSSCCCSSTTCCBCCCCSS-CCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEE
T ss_pred EEECCCCccccCCccceeeccCCCc-ceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEE
Confidence 999976421 11223556654 6888999997 4579999999999999999999988772 678899999
Q ss_pred Eec-CCCEEEEEeCCCeEEEEECCC-CceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEE
Q 043172 400 FAD-DGKQLLSSGGDGQVYHWDLRT-RTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKT 477 (564)
Q Consensus 400 ~sp-dg~~l~s~s~dg~V~lwD~~~-~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~ 477 (564)
|+| ++++|++|+.|++|++||++. ..++..+.. +...|.+++|+|++++|++|+.||+|+|||++++ .++..
T Consensus 213 ~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~-h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~-----~~~~~ 286 (380)
T 3iz6_a 213 INSLNANMFISGSCDTTVRLWDLRITSRAVRTYHG-HEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG-----HQLQV 286 (380)
T ss_dssp ECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECC-CSSCCCEEEECTTSSEEEEECSSSCEEEEETTTT-----EEEEE
T ss_pred eecCCCCEEEEEECCCeEEEEECCCCCcceEEECC-cCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCC-----cEEEE
Confidence 987 889999999999999999984 456666654 4457899999999999999999999999999987 66666
Q ss_pred cccc-------ccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCC-CCCCCCCcEEEEEeCCCCEEEEEcC
Q 043172 478 IENL-------TTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPP-ANRNLQYPRCLDFSPGGGFMAVGNA 549 (564)
Q Consensus 478 ~~~~-------~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~-~~~~~~~V~~l~fspdg~~Lasgs~ 549 (564)
+..+ ...|++++|+|+|++|++|+. ++.|++||+.++.....+.. ...|.+.|++++|+|+|.+|++|+.
T Consensus 287 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~--dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~ 364 (380)
T 3iz6_a 287 YNREPDRNDNELPIVTSVAFSISGRLLFAGYS--NGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSW 364 (380)
T ss_dssp ECCCCSSSCCSSCSCSEEEECSSSSEEEEECT--TSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECT
T ss_pred ecccccccccccCceEEEEECCCCCEEEEEEC--CCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeC
Confidence 5433 235899999999999999998 99999999998887665533 2567789999999999999999999
Q ss_pred CCeEEEEEcCCCCC
Q 043172 550 AGKVFLYKLNHYHH 563 (564)
Q Consensus 550 dG~V~lw~l~~~~~ 563 (564)
||+|+||++..++.
T Consensus 365 D~~i~iW~~~~~~~ 378 (380)
T 3iz6_a 365 DKNLKIWAFSGHRK 378 (380)
T ss_dssp TSCEEEEECCSSSS
T ss_pred CCCEEEEecCCCcc
Confidence 99999999987653
No 7
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=9.6e-42 Score=349.00 Aligned_cols=304 Identities=15% Similarity=0.152 Sum_probs=246.5
Q ss_pred cCCCCCCC-CeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEE-EEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEE
Q 043172 256 NADESSTG-PINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQS-IFLEDCPVRKASFLPDGSQAIIAGRRKFFYSL 333 (564)
Q Consensus 256 ~~~~~h~~-~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~-~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iw 333 (564)
.+..+|.. .|++++|+|+|++||+|+.|++|+||++.......... ..+|...|.+++|+|+|++|++++.|+.+++|
T Consensus 9 ~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw 88 (345)
T 3fm0_A 9 GRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIW 88 (345)
T ss_dssp EEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred eeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEE
Confidence 34556877 99999999999999999999999999998543222222 25789999999999999999999999999999
Q ss_pred ECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE---EEEee-ecCcEEEEEEecCCCEEEE
Q 043172 334 DLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKEL---IGTLK-MNGTVRSLAFADDGKQLLS 409 (564)
Q Consensus 334 dl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~---~~~~~-~~~~V~~l~~spdg~~l~s 409 (564)
++.++....+..+.+|.. .|.+++|+|++++|++++.|+.|++||+.++.. +..+. |...|.+++|+|++.+|++
T Consensus 89 ~~~~~~~~~~~~~~~h~~-~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s 167 (345)
T 3fm0_A 89 KKNQDDFECVTTLEGHEN-EVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLAS 167 (345)
T ss_dssp EECCC-EEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEE
T ss_pred EccCCCeEEEEEccCCCC-CceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEE
Confidence 998886555556777765 799999999999999999999999999987643 44444 7889999999999999999
Q ss_pred EeCCCeEEEEECCCCcee--EEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccC----------CcceeeEE
Q 043172 410 SGGDGQVYHWDLRTRTCI--HRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLG----------GKRKPIKT 477 (564)
Q Consensus 410 ~s~dg~V~lwD~~~~~~~--~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~----------~~~~~~~~ 477 (564)
++.|+.|++||+.++... ..+. .+...|.+++|+|+|++|++|+.||+|+||+...... ....++.+
T Consensus 168 ~s~d~~i~~w~~~~~~~~~~~~~~-~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (345)
T 3fm0_A 168 ASYDDTVKLYREEEDDWVCCATLE-GHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICT 246 (345)
T ss_dssp EETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEE
T ss_pred EeCCCcEEEEEecCCCEEEEEEec-CCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEE
Confidence 999999999999887533 3444 3445799999999999999999999999999743210 11234445
Q ss_pred ccc-cccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceecc------CCCCCCCCCCcEEEEEeCCC-CEEEEEcC
Q 043172 478 IEN-LTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSN------WPPANRNLQYPRCLDFSPGG-GFMAVGNA 549 (564)
Q Consensus 478 ~~~-~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~------~~~~~~~~~~V~~l~fspdg-~~Lasgs~ 549 (564)
+.+ |...|++++|+|++..|++++. |+.|++|+......... ......|...|++++|+|++ .+||+|+.
T Consensus 247 ~~~~h~~~v~~v~~~~~~~~l~s~~~--d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~ 324 (345)
T 3fm0_A 247 LSGFHSRTIYDIAWCQLTGALATACG--DDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSD 324 (345)
T ss_dssp ECSSCSSCEEEEEECTTTCCEEEEET--TSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEET
T ss_pred ecCCCCCcEEEEEEecCCCEEEEEeC--CCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCC
Confidence 554 7889999999999999999999 99999999876432111 11234577889999999998 49999999
Q ss_pred CCeEEEEEcCCCCC
Q 043172 550 AGKVFLYKLNHYHH 563 (564)
Q Consensus 550 dG~V~lw~l~~~~~ 563 (564)
||+|+||++...+.
T Consensus 325 Dg~v~~W~~~~~~~ 338 (345)
T 3fm0_A 325 DGEVAFWKYQRPEG 338 (345)
T ss_dssp TSCEEEEEECC---
T ss_pred CCcEEEEEecCCCC
Confidence 99999999987653
No 8
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=7.4e-42 Score=349.84 Aligned_cols=290 Identities=13% Similarity=0.126 Sum_probs=241.0
Q ss_pred CCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecC---------CCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCe
Q 043172 259 ESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDG---------KRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKF 329 (564)
Q Consensus 259 ~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~---------~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~ 329 (564)
..|...|.+++|+|||++|++++ |+++++|+... ...........+..+|.+++|+|++ .|++++.||.
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~ 104 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGA 104 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSE
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCE
Confidence 34778899999999999999887 77888886321 1111222334466789999999985 7889999999
Q ss_pred EEEEECCCCceeeecc--ccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEecCC-C
Q 043172 330 FYSLDLVKAKADKIGP--LVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDG-K 405 (564)
Q Consensus 330 i~iwdl~~~~~~~~~~--~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg-~ 405 (564)
|+|||+.+++...... ..+|.. .|.+++|+|+|++|++|+.|+.|++||+.+++.+..+. |.+.|++++|+|++ .
T Consensus 105 v~lWd~~~~~~~~~~~~~~~~H~~-~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~ 183 (344)
T 4gqb_B 105 VELWELDENETLIVSKFCKYEHDD-IVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDS 183 (344)
T ss_dssp EEEEEECTTSSCEEEEEEEECCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTT
T ss_pred EEEEeccCCCceeEeeccccCCCC-CEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCC
Confidence 9999999987544322 345554 79999999999999999999999999999999999998 89999999999987 4
Q ss_pred EEEEEeCCCeEEEEECCCCceeEEEee-cCCcceEEEEECCC-CCEEEEEeCCCcEEEEeCCcccCCcceeeEEcccccc
Q 043172 406 QLLSSGGDGQVYHWDLRTRTCIHRAVD-EGCINGTALCTSPD-GTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTT 483 (564)
Q Consensus 406 ~l~s~s~dg~V~lwD~~~~~~~~~~~~-~~~~~i~~l~~sp~-g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~ 483 (564)
+|++++.|++|++||+++++++..+.. .+...+++++|+|+ +++|++|+.||.|+|||++++ +++.++.+|..
T Consensus 184 ~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~-----~~~~~~~~h~~ 258 (344)
T 4gqb_B 184 VFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST-----SCVLSSAVHSQ 258 (344)
T ss_dssp EEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC-------CCEEEECCSS
T ss_pred ceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCC-----cEEEEEcCCCC
Confidence 788999999999999999998877654 33446789999985 568999999999999999987 88999999999
Q ss_pred ceeEEEEcCCC-cEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCC-EEEEEcCCCeEEEEEcCCC
Q 043172 484 KVDFMKFNNDA-QILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGG-FMAVGNAAGKVFLYKLNHY 561 (564)
Q Consensus 484 ~I~~l~fspdg-~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~-~Lasgs~dG~V~lw~l~~~ 561 (564)
.|++++|+|++ ++|++|+. |++|+|||+.+++++. ..+|.+.|++++|+|++. +|++|+.||+|++|++...
T Consensus 259 ~v~~v~fsp~g~~~lasgs~--D~~i~vwd~~~~~~~~----~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 259 CVTGLVFSPHSVPFLASLSE--DCSLAVLDSSLSELFR----SQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp CEEEEEECSSSSCCEEEEET--TSCEEEECTTCCEEEE----ECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred CEEEEEEccCCCeEEEEEeC--CCeEEEEECCCCcEEE----EcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence 99999999998 57899998 9999999999987764 245778999999999986 5678999999999999764
Q ss_pred C
Q 043172 562 H 562 (564)
Q Consensus 562 ~ 562 (564)
.
T Consensus 333 ~ 333 (344)
T 4gqb_B 333 P 333 (344)
T ss_dssp -
T ss_pred C
Confidence 3
No 9
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=3.5e-41 Score=341.02 Aligned_cols=291 Identities=19% Similarity=0.272 Sum_probs=249.4
Q ss_pred cCCCCCCCCeeEEEEcCCC-CEEEEEeCCCcEEEEEecCCC---CceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEE
Q 043172 256 NADESSTGPINSVQFHRNA-QLLLVAGLDRRLRFFQIDGKR---NTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFY 331 (564)
Q Consensus 256 ~~~~~h~~~V~~l~fspdg-~~l~s~s~dg~I~lwd~~~~~---~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~ 331 (564)
.+..+|.++|++|+|+|++ .+|++|+.|++|++|++.... ...+..+.+|..+|.+++|+|+|++|++++.|+.|+
T Consensus 11 ~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~ 90 (319)
T 3frx_A 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR 90 (319)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred EEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEE
Confidence 3567899999999999965 899999999999999986432 234677889999999999999999999999999999
Q ss_pred EEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEecC------C
Q 043172 332 SLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADD------G 404 (564)
Q Consensus 332 iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spd------g 404 (564)
+||+.+++... .+.+|.. .|.+++|+|++.+|++++.|+.|++||++.. .+..+. |...|.+++|+|. +
T Consensus 91 ~wd~~~~~~~~--~~~~h~~-~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~ 166 (319)
T 3frx_A 91 LWDVATGETYQ--RFVGHKS-DVMSVDIDKKASMIISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDS 166 (319)
T ss_dssp EEETTTTEEEE--EEECCSS-CEEEEEECTTSCEEEEEETTSCEEEEETTSC-EEEEECCCSSCEEEEEECCC------C
T ss_pred EEECCCCCeeE--EEccCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eEEEEeccCCcEEEEEEccCCCCCCCc
Confidence 99999998643 4666665 7999999999999999999999999999754 444554 8899999999985 4
Q ss_pred CEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccc
Q 043172 405 KQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTK 484 (564)
Q Consensus 405 ~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~ 484 (564)
..|++++.|+.|++||+++.++...+..+. ..+.+++|+|++++|++|+.||.|+|||+... +++..+.. ...
T Consensus 167 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~-~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~-~~~ 239 (319)
T 3frx_A 167 VTIISAGNDKMVKAWNLNQFQIEADFIGHN-SNINTLTASPDGTLIASAGKDGEIMLWNLAAK-----KAMYTLSA-QDE 239 (319)
T ss_dssp CEEEEEETTSCEEEEETTTTEEEEEECCCC-SCEEEEEECTTSSEEEEEETTCEEEEEETTTT-----EEEEEEEC-CSC
T ss_pred cEEEEEeCCCEEEEEECCcchhheeecCCC-CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-----cEEEEecC-CCc
Confidence 589999999999999999988887776544 47999999999999999999999999999987 77777765 468
Q ss_pred eeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCC-----CCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q 043172 485 VDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPA-----NRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLN 559 (564)
Q Consensus 485 I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~-----~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~ 559 (564)
|.+++|+|++.+|++++ ++.+++|++........+... ..+...+.+++|+|+|++|++|+.||.|+||++.
T Consensus 240 v~~~~~sp~~~~la~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 240 VFSLAFSPNRYWLAAAT---ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316 (319)
T ss_dssp EEEEEECSSSSEEEEEE---TTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred EEEEEEcCCCCEEEEEc---CCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEe
Confidence 99999999999999887 467999999877655443322 2234678999999999999999999999999986
Q ss_pred C
Q 043172 560 H 560 (564)
Q Consensus 560 ~ 560 (564)
+
T Consensus 317 t 317 (319)
T 3frx_A 317 T 317 (319)
T ss_dssp E
T ss_pred e
Confidence 5
No 10
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=9e-42 Score=351.06 Aligned_cols=290 Identities=15% Similarity=0.206 Sum_probs=239.8
Q ss_pred CCCCCCCeeEEEEcCCCCEEEEEeC------CCcEEEEEecCCC--CceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCe
Q 043172 258 DESSTGPINSVQFHRNAQLLLVAGL------DRRLRFFQIDGKR--NTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKF 329 (564)
Q Consensus 258 ~~~h~~~V~~l~fspdg~~l~s~s~------dg~I~lwd~~~~~--~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~ 329 (564)
...|...|++|+|||||++|++|+. |+.|++|+..... .........|...|.+++|+|++. +++++.++.
T Consensus 38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~ 116 (357)
T 4g56_B 38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGA 116 (357)
T ss_dssp --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSC
T ss_pred cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCE
Confidence 3469999999999999999999997 6788999765322 223344556888999999999975 566788999
Q ss_pred EEEEECCCCceeeeccc--cccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCC-
Q 043172 330 FYSLDLVKAKADKIGPL--VGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGK- 405 (564)
Q Consensus 330 i~iwdl~~~~~~~~~~~--~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~- 405 (564)
|+|||+.+++......+ .+|. ..|.+++|+|++++|++++.+|.|++||+.+++.+..+. |...|++++|+|++.
T Consensus 117 v~lWd~~~~~~~~~~~~~~~~h~-~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~ 195 (357)
T 4g56_B 117 VELWEILEKESLLVNKFAKYEHD-DIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDT 195 (357)
T ss_dssp EEEC--------CCCCEEECCCS-SCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSS
T ss_pred EEEeeccccceeEEEeeccCCCC-CCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCc
Confidence 99999998875443332 3444 479999999999999999999999999999999999988 899999999999874
Q ss_pred EEEEEeCCCeEEEEECCCCceeEEEee-cCCcceEEEEECCC-CCEEEEEeCCCcEEEEeCCcccCCcceeeEEcccccc
Q 043172 406 QLLSSGGDGQVYHWDLRTRTCIHRAVD-EGCINGTALCTSPD-GTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTT 483 (564)
Q Consensus 406 ~l~s~s~dg~V~lwD~~~~~~~~~~~~-~~~~~i~~l~~sp~-g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~ 483 (564)
+|++++.||.|++||+++++++..+.. .+...+++++|+|+ +.+|++|+.|+.|+|||++.. +++.++.+|..
T Consensus 196 ~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~-----~~~~~~~~~~~ 270 (357)
T 4g56_B 196 IFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP-----DSAQTSAVHSQ 270 (357)
T ss_dssp CEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG-----GGCEEECCCSS
T ss_pred eeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC-----cEeEEEeccce
Confidence 788999999999999999887765543 34456899999997 468999999999999999987 88899999999
Q ss_pred ceeEEEEcCCC-cEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeC-CCCEEEEEcCCCeEEEEEcCC
Q 043172 484 KVDFMKFNNDA-QILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSP-GGGFMAVGNAAGKVFLYKLNH 560 (564)
Q Consensus 484 ~I~~l~fspdg-~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fsp-dg~~Lasgs~dG~V~lw~l~~ 560 (564)
.|++++|+|++ ++|++++. |++|+|||+.+++.+..+ .|.+.|++++|+| ++.+|++|+.||+|++|++..
T Consensus 271 ~v~~l~~sp~~~~~lasgs~--D~~i~iwd~~~~~~~~~~----~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 271 NITGLAYSYHSSPFLASISE--DCTVAVLDADFSEVFRDL----SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp CEEEEEECSSSSCCEEEEET--TSCEEEECTTSCEEEEEC----CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred eEEEEEEcCCCCCEEEEEeC--CCEEEEEECCCCcEeEEC----CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence 99999999987 57889998 999999999999887643 4668999999999 799999999999999999964
No 11
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1e-40 Score=340.83 Aligned_cols=294 Identities=15% Similarity=0.186 Sum_probs=241.3
Q ss_pred cCCCCCCCCeeEEEE-----cC-CCCEEEEEeCCCcEEEEEecCCC-----CceeEEEEeCCcCeEEEEEeeCCCEEEEE
Q 043172 256 NADESSTGPINSVQF-----HR-NAQLLLVAGLDRRLRFFQIDGKR-----NTKIQSIFLEDCPVRKASFLPDGSQAIIA 324 (564)
Q Consensus 256 ~~~~~h~~~V~~l~f-----sp-dg~~l~s~s~dg~I~lwd~~~~~-----~~~~~~~~~~~~~I~~l~fspdg~~l~s~ 324 (564)
....+|.++|++++| +| ++++|++|+.|++|+||++.... ......+.+|..+|.+++|+|++.+|+++
T Consensus 15 ~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~ 94 (343)
T 2xzm_R 15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISS 94 (343)
T ss_dssp EEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEE
T ss_pred eeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEE
Confidence 345689999999999 77 99999999999999999996432 23456788999999999999999999999
Q ss_pred eCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe---eecCcEEEEEEe
Q 043172 325 GRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTL---KMNGTVRSLAFA 401 (564)
Q Consensus 325 ~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~---~~~~~V~~l~~s 401 (564)
+.|+.|++||+.+++... .+.+|.. .|.+++|+|++++|++++.|+.|++||+......... .|...|.+++|+
T Consensus 95 s~D~~v~lwd~~~~~~~~--~~~~h~~-~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~ 171 (343)
T 2xzm_R 95 SWDKTLRLWDLRTGTTYK--RFVGHQS-EVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYS 171 (343)
T ss_dssp ETTSEEEEEETTSSCEEE--EEECCCS-CEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEEC
T ss_pred cCCCcEEEEECCCCcEEE--EEcCCCC-cEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeec
Confidence 999999999999987643 4566665 7999999999999999999999999999854433332 277889999999
Q ss_pred cCC----------CEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCc
Q 043172 402 DDG----------KQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGK 471 (564)
Q Consensus 402 pdg----------~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~ 471 (564)
|++ .+|++++.||.|++||. .......+.. +...+.+++|+|+|++|++|+.||.|+|||+...
T Consensus 172 ~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~-h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~---- 245 (343)
T 2xzm_R 172 PIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKA-HESNVNHLSISPNGKYIATGGKDKKLLIWDILNL---- 245 (343)
T ss_dssp CCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEEC-CSSCEEEEEECTTSSEEEEEETTCEEEEEESSCC----
T ss_pred cccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcC-ccccceEEEECCCCCEEEEEcCCCeEEEEECCCC----
Confidence 987 78999999999999994 4555555554 4457999999999999999999999999999543
Q ss_pred ceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceec--cCCC--------CCCCCCCcEEEEEeCCC
Q 043172 472 RKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFS--NWPP--------ANRNLQYPRCLDFSPGG 541 (564)
Q Consensus 472 ~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~--~~~~--------~~~~~~~V~~l~fspdg 541 (564)
..+...+. +...|.+++|+|++++|++++ ++.|++|++.++.... .+.. ..+|...|++++|+|+|
T Consensus 246 ~~~~~~~~-~~~~v~~v~~sp~~~~la~~~---d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g 321 (343)
T 2xzm_R 246 TYPQREFD-AGSTINQIAFNPKLQWVAVGT---DQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALG 321 (343)
T ss_dssp SSCSEEEE-CSSCEEEEEECSSSCEEEEEE---SSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSS
T ss_pred cccceeec-CCCcEEEEEECCCCCEEEEEC---CCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCC
Confidence 13333332 456799999999999887665 6889999998765433 2221 12566789999999999
Q ss_pred CEEEEEcCCCeEEEEEcCCCC
Q 043172 542 GFMAVGNAAGKVFLYKLNHYH 562 (564)
Q Consensus 542 ~~Lasgs~dG~V~lw~l~~~~ 562 (564)
.+|++|+.||.|++|++.+..
T Consensus 322 ~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 322 KKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp CCEEEEETTSEEEEEEEEEEE
T ss_pred CeEEEecCCceEEEEEEEccC
Confidence 999999999999999987653
No 12
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.8e-40 Score=333.69 Aligned_cols=288 Identities=17% Similarity=0.213 Sum_probs=254.8
Q ss_pred CCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECC
Q 043172 257 ADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLV 336 (564)
Q Consensus 257 ~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~ 336 (564)
...+|..+|++++|+|++++|++|+.|+.|++|++.. ......+..|..+|.+++|+|++++|++++.++.|++||+.
T Consensus 18 ~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~ 95 (312)
T 4ery_A 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD--GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS 95 (312)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred EEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCC--cccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECC
Confidence 3467999999999999999999999999999999874 44677788999999999999999999999999999999999
Q ss_pred CCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEeCCCe
Q 043172 337 KAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQ 415 (564)
Q Consensus 337 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~ 415 (564)
+++... .+.+|.. .|.+++|+|++++|++++.+|.|++||+++++.+..+. |...|.+++|+|++++|++++.||.
T Consensus 96 ~~~~~~--~~~~~~~-~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 172 (312)
T 4ery_A 96 SGKCLK--TLKGHSN-YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 172 (312)
T ss_dssp TCCEEE--EEECCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred CCcEEE--EEcCCCC-CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCc
Confidence 988643 3556554 79999999999999999999999999999999988887 8889999999999999999999999
Q ss_pred EEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeE---EEEcC
Q 043172 416 VYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDF---MKFNN 492 (564)
Q Consensus 416 V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~---l~fsp 492 (564)
|++||+++++++..+...+...+..++|+|++++|++++.+|.|++||+... +++..+.+|...+.+ ....+
T Consensus 173 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 247 (312)
T 4ery_A 173 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-----KCLKTYTGHKNEKYCIFANFSVT 247 (312)
T ss_dssp EEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT-----EEEEEECSSCCSSSCCCEEEECS
T ss_pred EEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC-----cEEEEEEecCCceEEEEEEEEeC
Confidence 9999999999888877666667899999999999999999999999999987 788888877654433 33346
Q ss_pred CCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEc--CCCeEEEEEcC
Q 043172 493 DAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGN--AAGKVFLYKLN 559 (564)
Q Consensus 493 dg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs--~dG~V~lw~l~ 559 (564)
++.+|++|+. |+.|++|++.++..+..+. .|...|.+++|+|++.+|++++ .||.|++|+..
T Consensus 248 ~~~~l~sg~~--dg~i~vwd~~~~~~~~~~~---~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 248 GGKWIVSGSE--DNLVYIWNLQTKEIVQKLQ---GHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp SSCEEEECCT--TSCEEEEETTTCCEEEEEC---CCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred CCcEEEEECC--CCEEEEEECCCchhhhhhh---ccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 7899999998 9999999999998877654 4558899999999999999986 69999999964
No 13
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3.6e-40 Score=363.44 Aligned_cols=325 Identities=16% Similarity=0.192 Sum_probs=259.0
Q ss_pred cccCCCeEEcCCCccCCCeeeeeeeecccCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCc
Q 043172 228 LRTDEDLVVKSSAKLSPGLLEYSRLIDANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDC 307 (564)
Q Consensus 228 l~~~~~~~~~~~~~l~~~~~d~~rl~~~~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~ 307 (564)
+.+.+++++..... ...+|++..........+|...|++++|+|+|++||+|+.|++|+|||+..........+.+|..
T Consensus 26 ~spdg~~l~~~~~~-~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~ 104 (611)
T 1nr0_A 26 NTPAGDKIQYCNGT-SVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSG 104 (611)
T ss_dssp ECTTSSEEEEEETT-EEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSS
T ss_pred eCCCCCEEEeCCCC-EEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCC
Confidence 34445555443211 23344443333334456899999999999999999999999999999997555556677888999
Q ss_pred CeEEEEEeeCCCEEEEEeCC----CeEEEEECCCCceeeeccccccCCcceEEEEEcCCCC-EEEEEeCCCeEEEEECCC
Q 043172 308 PVRKASFLPDGSQAIIAGRR----KFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSS-VIAFVGNEGYILLVSSKT 382 (564)
Q Consensus 308 ~I~~l~fspdg~~l~s~~~d----g~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~-~la~~~~dg~I~lwd~~t 382 (564)
+|.+++|+|+|++|++++.+ +.|++||. +.. ...+.+|.. .|.+++|+|++. .|++++.|+.|++||..+
T Consensus 105 ~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~--~~~--~~~l~gh~~-~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~ 179 (611)
T 1nr0_A 105 PVKDISWDSESKRIAAVGEGRERFGHVFLFDT--GTS--NGNLTGQAR-AMNSVDFKPSRPFRIISGSDDNTVAIFEGPP 179 (611)
T ss_dssp CEEEEEECTTSCEEEEEECCSSCSEEEEETTT--CCB--CBCCCCCSS-CEEEEEECSSSSCEEEEEETTSCEEEEETTT
T ss_pred ceEEEEECCCCCEEEEEECCCCceeEEEEeeC--CCC--cceecCCCC-CceEEEECCCCCeEEEEEeCCCeEEEEECCC
Confidence 99999999999999998854 46778874 433 334667665 799999999987 699999999999999999
Q ss_pred CcEEEEee-ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEee------cCCcceEEEEECCCCCEEEEEeC
Q 043172 383 KELIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVD------EGCINGTALCTSPDGTFFAAGSD 455 (564)
Q Consensus 383 ~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~------~~~~~i~~l~~sp~g~~lasgs~ 455 (564)
++++..+. |...|.+++|+|+|++|++++.|++|++||+.+++++..+.. .|...|.+++|+|+|++|++|+.
T Consensus 180 ~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~ 259 (611)
T 1nr0_A 180 FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASA 259 (611)
T ss_dssp BEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEET
T ss_pred CeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeC
Confidence 99888887 899999999999999999999999999999999998887743 45568999999999999999999
Q ss_pred CCcEEEEeCCcccCC--------------------------------------cceeeEEccccccceeEEEEcCCCcEE
Q 043172 456 SGIVNVYNRQEFLGG--------------------------------------KRKPIKTIENLTTKVDFMKFNNDAQIL 497 (564)
Q Consensus 456 dg~V~iwd~~~~~~~--------------------------------------~~~~~~~~~~~~~~I~~l~fspdg~~L 497 (564)
|++|+|||+.++... ...++..+.+|...|++++|+|+|++|
T Consensus 260 D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l 339 (611)
T 1nr0_A 260 DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTL 339 (611)
T ss_dssp TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred CCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEE
Confidence 999999999864100 011334556889999999999999999
Q ss_pred EEEecCCCCeEEEEEcCCCceeccCCCC----------------------------------------------------
Q 043172 498 AICSTMKKNSLKLIHIPSYNVFSNWPPA---------------------------------------------------- 525 (564)
Q Consensus 498 a~~s~~~d~~I~lwdl~s~~~~~~~~~~---------------------------------------------------- 525 (564)
++++. |+.|++|++.++.....+...
T Consensus 340 ~s~s~--D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~ 417 (611)
T 1nr0_A 340 FSADA--EGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGL 417 (611)
T ss_dssp EEEET--TSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEE
T ss_pred EEEeC--CCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEE
Confidence 99999 999999999876543322100
Q ss_pred ----C-----------------------CCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCC
Q 043172 526 ----N-----------------------RNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNH 560 (564)
Q Consensus 526 ----~-----------------------~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~ 560 (564)
. .+...+++++|+|+|++||+|+.||+|+||++..
T Consensus 418 ~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~ 479 (611)
T 1nr0_A 418 AVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSG 479 (611)
T ss_dssp EECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEET
T ss_pred EEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccC
Confidence 0 0123467899999999999999999999999864
No 14
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.4e-40 Score=364.83 Aligned_cols=313 Identities=16% Similarity=0.143 Sum_probs=250.5
Q ss_pred EEcCCCccCCCeeeeeeeecccCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEE-------eCCc
Q 043172 235 VVKSSAKLSPGLLEYSRLIDANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIF-------LEDC 307 (564)
Q Consensus 235 ~~~~~~~l~~~~~d~~rl~~~~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~-------~~~~ 307 (564)
+++++.+-....|+...........+|...|++++|+|++++|++|+.|++|+||++... ..+..+. +|..
T Consensus 163 l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g--~~~~~~~~~~~~~~~h~~ 240 (611)
T 1nr0_A 163 IISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG--TKTGVFEDDSLKNVAHSG 240 (611)
T ss_dssp EEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--CEEEECBCTTSSSCSSSS
T ss_pred EEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCC--cEeeeeccccccccccCC
Confidence 444445555566665544444456789999999999999999999999999999998643 3555553 6899
Q ss_pred CeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeec-----------------------------------------cc
Q 043172 308 PVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIG-----------------------------------------PL 346 (564)
Q Consensus 308 ~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~-----------------------------------------~~ 346 (564)
.|.+++|+|+|++|++++.|++|++||+.+++..... .+
T Consensus 241 ~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~ 320 (611)
T 1nr0_A 241 SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVR 320 (611)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEE
Confidence 9999999999999999999999999999987654321 12
Q ss_pred cccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe-------------------------------------
Q 043172 347 VGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTL------------------------------------- 389 (564)
Q Consensus 347 ~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~------------------------------------- 389 (564)
.+|. ..|.+++|+|+|++|++++.|+.|++||+.+++....+
T Consensus 321 ~gh~-~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~ 399 (611)
T 1nr0_A 321 YGHN-KAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSG 399 (611)
T ss_dssp CCCS-SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSS
T ss_pred cCCC-CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCcc
Confidence 3444 47999999999999999999999999999876543221
Q ss_pred ----------------------------------------------eecCcEEEEEEecCCCEEEEEeCCCeEEEEECCC
Q 043172 390 ----------------------------------------------KMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRT 423 (564)
Q Consensus 390 ----------------------------------------------~~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~ 423 (564)
.+...+.+++|+|+|++|++|+.|++|++||+.+
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~ 479 (611)
T 1nr0_A 400 VDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSG 479 (611)
T ss_dssp SCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEET
T ss_pred ccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccC
Confidence 1223467899999999999999999999999987
Q ss_pred CceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCc-ccCCcceeeEE--ccccccceeEEEEcCCCcEEEEE
Q 043172 424 RTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQE-FLGGKRKPIKT--IENLTTKVDFMKFNNDAQILAIC 500 (564)
Q Consensus 424 ~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~-~~~~~~~~~~~--~~~~~~~I~~l~fspdg~~La~~ 500 (564)
+.........+...|++++|+|+|++|++++.|++|++|++.. . +.+.. +..|...|++++|+|+|++||++
T Consensus 480 ~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~-----~~~~~~~~~~H~~~V~~v~fspdg~~lasg 554 (611)
T 1nr0_A 480 ASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNF-----ELAHTNSWTFHTAKVACVSWSPDNVRLATG 554 (611)
T ss_dssp TEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTT-----EESCCCCCCCCSSCEEEEEECTTSSEEEEE
T ss_pred CceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCC-----ceeeeeeeeecccceeEEEECCCCCEEEEE
Confidence 6542222234555799999999999999999999999999986 3 44433 34499999999999999999999
Q ss_pred ecCCCCeEEEEEcCCCceeccCCCCCCC-CCCcEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q 043172 501 STMKKNSLKLIHIPSYNVFSNWPPANRN-LQYPRCLDFSPGGGFMAVGNAAGKVFLYKLN 559 (564)
Q Consensus 501 s~~~d~~I~lwdl~s~~~~~~~~~~~~~-~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~ 559 (564)
+. |++|+||++.++.... ......| ...|++++|+|++. |++|+.||+|++|++.
T Consensus 555 s~--D~~v~lW~~~~~~~~~-~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 555 SL--DNSVIVWNMNKPSDHP-IIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp ET--TSCEEEEETTCTTSCC-EEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred EC--CCcEEEEECCCccccc-chhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 99 9999999998764211 0123345 68899999999998 9999999999999984
No 15
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=9.1e-40 Score=340.42 Aligned_cols=292 Identities=16% Similarity=0.159 Sum_probs=247.2
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeC------------------CcCeEEEEEeeCCCEE
Q 043172 260 SSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLE------------------DCPVRKASFLPDGSQA 321 (564)
Q Consensus 260 ~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~------------------~~~I~~l~fspdg~~l 321 (564)
.|.+.|+|++|+|+|++|++|+ +++++||++..+ ..+..+..+ ...|.+++|+|+|++|
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l 138 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDG--SLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 138 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTC--CEEEEECC-----------------CCCCBEEEEEECTTSSEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCC--CEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEE
Confidence 4999999999999999999986 789999998743 344444333 2248999999999999
Q ss_pred EEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeeecCcEEEEEEe
Q 043172 322 IIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLKMNGTVRSLAFA 401 (564)
Q Consensus 322 ~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~~~~~V~~l~~s 401 (564)
++++.|+.|++||+.+++... .+.+|.. .|.+++|+|++.+|++++.|+.|++||+.+++....+.+...+.+++|+
T Consensus 139 ~s~~~d~~i~iwd~~~~~~~~--~~~~h~~-~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~ 215 (393)
T 1erj_A 139 ATGAEDRLIRIWDIENRKIVM--ILQGHEQ-DIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVS 215 (393)
T ss_dssp EEEETTSCEEEEETTTTEEEE--EECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEC
T ss_pred EEEcCCCeEEEEECCCCcEEE--EEccCCC-CEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEE
Confidence 999999999999999987644 3566665 7999999999999999999999999999999999888888899999999
Q ss_pred c-CCCEEEEEeCCCeEEEEECCCCceeEEEe------ecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccC-----
Q 043172 402 D-DGKQLLSSGGDGQVYHWDLRTRTCIHRAV------DEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLG----- 469 (564)
Q Consensus 402 p-dg~~l~s~s~dg~V~lwD~~~~~~~~~~~------~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~----- 469 (564)
| ++++|++++.||.|++||++++.++..+. ..+...+.+++|+|++++|++|+.||.|++||+.....
T Consensus 216 ~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~ 295 (393)
T 1erj_A 216 PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSK 295 (393)
T ss_dssp STTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----------
T ss_pred CCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCccccc
Confidence 9 89999999999999999999998877663 23455789999999999999999999999999976310
Q ss_pred --CcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeC------CC
Q 043172 470 --GKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSP------GG 541 (564)
Q Consensus 470 --~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fsp------dg 541 (564)
....+..++.+|...|.+++|+|++++|++++. |+.|++||+.++..+..+. +|.+.|.+++|+| ++
T Consensus 296 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~--D~~v~iwd~~~~~~~~~l~---~h~~~v~~v~~~~~~~~~p~~ 370 (393)
T 1erj_A 296 TPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK--DRGVLFWDKKSGNPLLMLQ---GHRNSVISVAVANGSSLGPEY 370 (393)
T ss_dssp -----CEEEEEECCSSCEEEEEECGGGCEEEEEET--TSEEEEEETTTCCEEEEEE---CCSSCEEEEEECSSCTTCTTC
T ss_pred CCCCCcceEEEecccCcEEEEEECCCCCEEEEEeC--CCeEEEEECCCCeEEEEEC---CCCCCEEEEEecCCcCcCCCC
Confidence 112345677889999999999999999999998 9999999999988876553 4568899999986 68
Q ss_pred CEEEEEcCCCeEEEEEcCCCC
Q 043172 542 GFMAVGNAAGKVFLYKLNHYH 562 (564)
Q Consensus 542 ~~Lasgs~dG~V~lw~l~~~~ 562 (564)
.+||+|+.||+|+||++....
T Consensus 371 ~~l~sgs~Dg~i~iW~~~~~~ 391 (393)
T 1erj_A 371 NVFATGSGDCKARIWKYKKIA 391 (393)
T ss_dssp EEEEEEETTSEEEEEEEEEC-
T ss_pred CEEEEECCCCcEEECcccccC
Confidence 899999999999999987543
No 16
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.9e-40 Score=333.10 Aligned_cols=296 Identities=15% Similarity=0.134 Sum_probs=230.8
Q ss_pred CCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEE-Ee-CCcCeEEEEEeeCCCEEEEEeCCCeEEEEE
Q 043172 257 ADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSI-FL-EDCPVRKASFLPDGSQAIIAGRRKFFYSLD 334 (564)
Q Consensus 257 ~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~-~~-~~~~I~~l~fspdg~~l~s~~~dg~i~iwd 334 (564)
...+|.++|++++|+|+ +|++|+.|++|+||++.......+..+ .. |..+|.+++|+|++++|++++.|+.|++|+
T Consensus 9 ~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~ 86 (330)
T 2hes_X 9 SLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWA 86 (330)
T ss_dssp EEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 34579999999999998 999999999999999975444445555 34 889999999999999999999999999999
Q ss_pred CCCCc-----eeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCC----CcEEEEee-ecCcEEEEEEecCC
Q 043172 335 LVKAK-----ADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKT----KELIGTLK-MNGTVRSLAFADDG 404 (564)
Q Consensus 335 l~~~~-----~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t----~~~~~~~~-~~~~V~~l~~spdg 404 (564)
+.... ...+..+.+|.. .|.+++|+|++++|++++.|+.|++||+.. .+.+..+. |...|.+++|+|++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~h~~-~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~ 165 (330)
T 2hes_X 87 KEESADRTFEMDLLAIIEGHEN-EVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSE 165 (330)
T ss_dssp C-------CCCEEEEEEC-----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSS
T ss_pred cccCcCccccceeEEEEcCCCC-cEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCC
Confidence 86432 112334556655 799999999999999999999999999943 24556666 88999999999999
Q ss_pred CEEEEEeCCCeEEEEECCCC--ceeEEEeecCCcceEEEEECCC--CCEEEEEeCCCcEEEEeCCcccCC---cceeeEE
Q 043172 405 KQLLSSGGDGQVYHWDLRTR--TCIHRAVDEGCINGTALCTSPD--GTFFAAGSDSGIVNVYNRQEFLGG---KRKPIKT 477 (564)
Q Consensus 405 ~~l~s~s~dg~V~lwD~~~~--~~~~~~~~~~~~~i~~l~~sp~--g~~lasgs~dg~V~iwd~~~~~~~---~~~~~~~ 477 (564)
.+|++++.|++|++||+.++ .++..+..+ ...|.+++|+|+ +.+|++|+.|++|+||++...... ...+...
T Consensus 166 ~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~ 244 (330)
T 2hes_X 166 ALLASSSYDDTVRIWKDYDDDWECVAVLNGH-EGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAI 244 (330)
T ss_dssp SEEEEEETTSCEEEEEEETTEEEEEEEECCC-SSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEE
T ss_pred CEEEEEcCCCeEEEEECCCCCeeEEEEccCC-CCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeee
Confidence 99999999999999999876 456665544 457899999998 679999999999999998753100 1134445
Q ss_pred ccc-cccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCc--eeccCCCCCCCCC-CcEEEEEeC--CCCEEEEEcCCC
Q 043172 478 IEN-LTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYN--VFSNWPPANRNLQ-YPRCLDFSP--GGGFMAVGNAAG 551 (564)
Q Consensus 478 ~~~-~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~--~~~~~~~~~~~~~-~V~~l~fsp--dg~~Lasgs~dG 551 (564)
+.. |...|.+++|++++ +|++++. |+.|+||++.++. ..... ...|.. .|++++|+| ++.+||+|+.||
T Consensus 245 ~~~~h~~~v~~v~~s~~~-~l~s~~~--dg~v~iw~~~~~~~~~~~~~--~~~h~~~~v~~v~~~~~~~~~~las~s~Dg 319 (330)
T 2hes_X 245 LPDVHKRQVYNVAWGFNG-LIASVGA--DGVLAVYEEVDGEWKVFAKR--ALCHGVYEINVVKWLELNGKTILATGGDDG 319 (330)
T ss_dssp CCSCCSSCEEEEEECTTS-CEEEEET--TSCEEEEEEETTEEEEEEEE--SCTTTTSCEEEEEEC-----CCEEEEETTS
T ss_pred cccccccceEEEEEcCCC-EEEEEeC--CCEEEEEEcCCCceEEEecc--ccccccceEEEEEEecCCCceEEEEecCCC
Confidence 554 88999999999765 7888888 9999999998763 22211 123444 799999999 789999999999
Q ss_pred eEEEEEcCCC
Q 043172 552 KVFLYKLNHY 561 (564)
Q Consensus 552 ~V~lw~l~~~ 561 (564)
.|+||++...
T Consensus 320 ~v~~W~~~~~ 329 (330)
T 2hes_X 320 IVNFWSLEKA 329 (330)
T ss_dssp EEEEEEC---
T ss_pred cEEEEEeccC
Confidence 9999998753
No 17
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=5.7e-39 Score=324.25 Aligned_cols=284 Identities=18% Similarity=0.246 Sum_probs=249.2
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCC-CceeEEEE--eCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECC
Q 043172 260 SSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKR-NTKIQSIF--LEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLV 336 (564)
Q Consensus 260 ~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~-~~~~~~~~--~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~ 336 (564)
+|..+|++++|+|++++|++++ ||.|++|++.... ...+..+. .|..+|.+++|+|++++|++++.++.|++||+.
T Consensus 49 ~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~ 127 (337)
T 1gxr_A 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA 127 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECC
T ss_pred cCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECC
Confidence 6999999999999999999999 9999999997543 22344444 688999999999999999999999999999999
Q ss_pred CCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEeCCCe
Q 043172 337 KAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQ 415 (564)
Q Consensus 337 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~ 415 (564)
+++......+..+.. .+.+++|+|++++|++++.+|.|++||+.+++.+..+. |...|.+++|+|++++|++++.||.
T Consensus 128 ~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 206 (337)
T 1gxr_A 128 APTPRIKAELTSSAP-ACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNT 206 (337)
T ss_dssp CC--EEEEEEECSSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred CCCcceeeecccCCC-ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCc
Confidence 887544444555554 79999999999999999999999999999999998887 8899999999999999999999999
Q ss_pred EEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCc
Q 043172 416 VYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQ 495 (564)
Q Consensus 416 V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~ 495 (564)
|++||+++++.+..+.. ...+.+++|+|++++|++++.+|.|++|++... . ...+..|...|.+++|+|+++
T Consensus 207 i~~~d~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~-----~-~~~~~~~~~~v~~~~~~~~~~ 278 (337)
T 1gxr_A 207 VRSWDLREGRQLQQHDF--TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP-----D-KYQLHLHESCVLSLKFAYCGK 278 (337)
T ss_dssp EEEEETTTTEEEEEEEC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTSS-----C-EEEECCCSSCEEEEEECTTSS
T ss_pred EEEEECCCCceEeeecC--CCceEEEEECCCCCEEEEEcCCCcEEEEECCCC-----C-eEEEcCCccceeEEEECCCCC
Confidence 99999999988877653 346899999999999999999999999999875 3 456778899999999999999
Q ss_pred EEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q 043172 496 ILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLN 559 (564)
Q Consensus 496 ~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~ 559 (564)
+|++++. ++.|++|++.++...... .+...|++++|+|++++|++++.||.|++|++.
T Consensus 279 ~l~~~~~--dg~i~~~~~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 279 WFVSTGK--DNLLNAWRTPYGASIFQS----KESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp EEEEEET--TSEEEEEETTTCCEEEEE----ECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred EEEEecC--CCcEEEEECCCCeEEEEe----cCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence 9999998 999999999998776432 244789999999999999999999999999974
No 18
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=5.5e-39 Score=325.36 Aligned_cols=296 Identities=16% Similarity=0.191 Sum_probs=247.3
Q ss_pred ccCCCCCCCCeeEEEEcCC-CCEEEEEeCCCcEEEEEecCCC---CceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeE
Q 043172 255 ANADESSTGPINSVQFHRN-AQLLLVAGLDRRLRFFQIDGKR---NTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFF 330 (564)
Q Consensus 255 ~~~~~~h~~~V~~l~fspd-g~~l~s~s~dg~I~lwd~~~~~---~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i 330 (564)
..++++|.++|++|+|+|+ +++|+|||.|++|+||++.... ..+...+.+|..+|.+++|+|+|++|++++.|+.|
T Consensus 31 ~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i 110 (340)
T 4aow_A 31 RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTL 110 (340)
T ss_dssp EEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred EEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccc
Confidence 3457889999999999997 6899999999999999997543 23466778899999999999999999999999999
Q ss_pred EEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee--ecCcEEEEEEecCC--CE
Q 043172 331 YSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK--MNGTVRSLAFADDG--KQ 406 (564)
Q Consensus 331 ~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~--~~~~V~~l~~spdg--~~ 406 (564)
++|+......... ...+. ..+..+.+++++.+|++++.|+.+++||+.......... |...+..++|++++ .+
T Consensus 111 ~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 187 (340)
T 4aow_A 111 RLWDLTTGTTTRR--FVGHT-KDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPI 187 (340)
T ss_dssp EEEETTTTEEEEE--EECCS-SCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCE
T ss_pred eEEeecccceeee--ecCCC-CceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcE
Confidence 9999998876443 22222 367889999999999999999999999998765544332 78899999998864 57
Q ss_pred EEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEcccccccee
Q 043172 407 LLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVD 486 (564)
Q Consensus 407 l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~ 486 (564)
+++++.|+.|++||+++++++..+..+. ..|++++|+|++++|++|+.||.|+|||+... +++..+.. ...|.
T Consensus 188 ~~s~~~d~~i~i~d~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~-----~~~~~~~~-~~~v~ 260 (340)
T 4aow_A 188 IVSCGWDKLVKVWNLANCKLKTNHIGHT-GYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG-----KHLYTLDG-GDIIN 260 (340)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCS-SCEEEEEECTTSSEEEEEETTCEEEEEETTTT-----EEEEEEEC-SSCEE
T ss_pred EEEEcCCCEEEEEECCCCceeeEecCCC-CcEEEEEECCCCCEEEEEeCCCeEEEEEeccC-----ceeeeecC-CceEE
Confidence 8899999999999999999888776544 47999999999999999999999999999987 77777764 46899
Q ss_pred EEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCC------CCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCC
Q 043172 487 FMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPP------ANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNH 560 (564)
Q Consensus 487 ~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~------~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~ 560 (564)
++.|+|++.+++++ . ++.|+||++.++.....+.. ...|...|++++|+|+|++|++|+.||.|+||++.+
T Consensus 261 ~~~~~~~~~~~~~~-~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~t 337 (340)
T 4aow_A 261 ALCFSPNRYWLCAA-T--GPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTI 337 (340)
T ss_dssp EEEECSSSSEEEEE-E--TTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred eeecCCCCceeecc-C--CCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC
Confidence 99999998776554 4 89999999998776554432 235678899999999999999999999999999988
Q ss_pred CCC
Q 043172 561 YHH 563 (564)
Q Consensus 561 ~~~ 563 (564)
+++
T Consensus 338 Gtr 340 (340)
T 4aow_A 338 GTR 340 (340)
T ss_dssp ---
T ss_pred cCC
Confidence 753
No 19
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.4e-38 Score=324.75 Aligned_cols=291 Identities=12% Similarity=0.127 Sum_probs=249.3
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCc
Q 043172 260 SSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAK 339 (564)
Q Consensus 260 ~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~ 339 (564)
.|.++|++++|+|++++|++|+.|+.|++|++.......+..+..|..+|.+++|+|++++|++++.++.|++||+.+++
T Consensus 6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 85 (372)
T 1k8k_C 6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT 85 (372)
T ss_dssp SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE
T ss_pred ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCe
Confidence 38899999999999999999999999999999865444778888999999999999999999999999999999999887
Q ss_pred eeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE---EEEee--ecCcEEEEEEecCCCEEEEEeCCC
Q 043172 340 ADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKEL---IGTLK--MNGTVRSLAFADDGKQLLSSGGDG 414 (564)
Q Consensus 340 ~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~---~~~~~--~~~~V~~l~~spdg~~l~s~s~dg 414 (564)
......+..+.. .|.+++|+|++++|++++.+|.|++|++.++.. ...+. |...|.+++|+|++++|++++.||
T Consensus 86 ~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 164 (372)
T 1k8k_C 86 WKPTLVILRINR-AARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF 164 (372)
T ss_dssp EEEEEECCCCSS-CEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred eeeeEEeecCCC-ceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCC
Confidence 655544555544 799999999999999999999999999988763 33332 688999999999999999999999
Q ss_pred eEEEEECC------------------CCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeE
Q 043172 415 QVYHWDLR------------------TRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIK 476 (564)
Q Consensus 415 ~V~lwD~~------------------~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~ 476 (564)
.|++||++ .+.++..+.. +...+.+++|+|++++|++++.||.|++||+... +++.
T Consensus 165 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-----~~~~ 238 (372)
T 1k8k_C 165 KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS-SCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK-----MAVA 238 (372)
T ss_dssp CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC-CSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT-----TEEE
T ss_pred CEEEEEcccccccccccccccccccchhhheEecCC-CCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCC-----ceeE
Confidence 99999954 5677766654 3447899999999999999999999999999987 8888
Q ss_pred EccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCC--Cc--eecc-------------------------------
Q 043172 477 TIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPS--YN--VFSN------------------------------- 521 (564)
Q Consensus 477 ~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s--~~--~~~~------------------------------- 521 (564)
.+..|..+|.+++|+|++.+|+++ . ++.|++|++.+ +. ....
T Consensus 239 ~~~~~~~~v~~~~~~~~~~~l~~~-~--d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (372)
T 1k8k_C 239 TLASETLPLLAVTFITESSLVAAG-H--DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSA 315 (372)
T ss_dssp EEECSSCCEEEEEEEETTEEEEEE-T--TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC------
T ss_pred EEccCCCCeEEEEEecCCCEEEEE-e--CCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCc
Confidence 999999999999999999998887 5 89999999987 42 1100
Q ss_pred ---CCCCCCCCCCcEEEEEe-CCC---CEEEEEcCCCeEEEEEcCC
Q 043172 522 ---WPPANRNLQYPRCLDFS-PGG---GFMAVGNAAGKVFLYKLNH 560 (564)
Q Consensus 522 ---~~~~~~~~~~V~~l~fs-pdg---~~Lasgs~dG~V~lw~l~~ 560 (564)
......|...|++++|+ ++| .+|++|+.||.|++|++.+
T Consensus 316 ~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 316 AAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp ---CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred cccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence 11123677899999966 676 9999999999999999864
No 20
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.3e-38 Score=345.36 Aligned_cols=278 Identities=22% Similarity=0.322 Sum_probs=244.5
Q ss_pred CCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCC
Q 043172 258 DESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVK 337 (564)
Q Consensus 258 ~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~ 337 (564)
..+|...|++++|+|++++|++++.|++|++|++.+. .+..+..|..+|.+++|+|+|++|++++.++.|++|+...
T Consensus 299 ~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~---~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~ 375 (577)
T 2ymu_A 299 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ---HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG 375 (577)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC---EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC
T ss_pred EecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC---eeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC
Confidence 4679999999999999999999999999999998643 5667788999999999999999999999999999999654
Q ss_pred CceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEeCCCeE
Q 043172 338 AKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQV 416 (564)
Q Consensus 338 ~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~V 416 (564)
+. +..+.+|.. .|.+++|+|++++|++++.++.|++|+. +++.+..+. |...|++++|+|++++|++++.|+.|
T Consensus 376 -~~--~~~~~~~~~-~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v 450 (577)
T 2ymu_A 376 -QL--LQTLTGHSS-SVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTV 450 (577)
T ss_dssp -CE--EEEEECCSS-CEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred -CE--EEEecCCCC-CeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEE
Confidence 33 233555554 7999999999999999999999999995 567777776 88999999999999999999999999
Q ss_pred EEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcE
Q 043172 417 YHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQI 496 (564)
Q Consensus 417 ~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~ 496 (564)
++||+. ++.+..+..+ ...+++++|+|++++||+++.|+.|+||+... +++..+.+|...|++|+|+|+|++
T Consensus 451 ~~w~~~-~~~~~~~~~~-~~~v~~~~~spd~~~las~~~d~~i~iw~~~~------~~~~~~~~h~~~v~~l~~s~dg~~ 522 (577)
T 2ymu_A 451 KLWNRN-GQLLQTLTGH-SSSVRGVAFSPDGQTIASASDDKTVKLWNRNG------QLLQTLTGHSSSVRGVAFSPDGQT 522 (577)
T ss_dssp EEEETT-SCEEEEEECC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTS------CEEEEEECCSSCEEEEEECTTSSC
T ss_pred EEEECC-CCEEEEEcCC-CCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC------CEEEEEeCCCCCEEEEEEcCCCCE
Confidence 999974 5666666644 44789999999999999999999999999653 788899999999999999999999
Q ss_pred EEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEE
Q 043172 497 LAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYK 557 (564)
Q Consensus 497 La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~ 557 (564)
|++++. |+.|+||+. +++.+..+ .+|.+.|++++|+|+|++|++++.||+|++||
T Consensus 523 l~s~~~--dg~v~lwd~-~~~~~~~~---~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 523 IASASD--DKTVKLWNR-NGQLLQTL---TGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEEEET--TSEEEEECT-TSCEEEEE---ECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEEC--cCEEEEEeC-CCCEEEEE---cCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 999998 999999996 45665544 35668899999999999999999999999997
No 21
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.2e-38 Score=329.87 Aligned_cols=288 Identities=16% Similarity=0.154 Sum_probs=233.7
Q ss_pred CCCCCCCeeEEEEcCCC-CEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEee-CCCEEEEEeCCCeEEEEEC
Q 043172 258 DESSTGPINSVQFHRNA-QLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLP-DGSQAIIAGRRKFFYSLDL 335 (564)
Q Consensus 258 ~~~h~~~V~~l~fspdg-~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fsp-dg~~l~s~~~dg~i~iwdl 335 (564)
..+|...|++++|+|++ ++|++|+.|+.|+||++............+|...|.+++|+| ++++|++++.++.|++||+
T Consensus 69 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~ 148 (383)
T 3ei3_B 69 ASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDF 148 (383)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEET
T ss_pred ccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEEC
Confidence 46799999999999999 999999999999999998654333333346999999999999 7899999999999999999
Q ss_pred CCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCC-EEEEEeCC
Q 043172 336 VKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGK-QLLSSGGD 413 (564)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~-~l~s~s~d 413 (564)
.+..........++. ..|.+++|+|++++|++++.+|.|++||+ +++.+..+. |...|.+++|+|+++ +|++++.|
T Consensus 149 ~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 226 (383)
T 3ei3_B 149 SGSVIQVFAKTDSWD-YWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVD 226 (383)
T ss_dssp TSCEEEEEECCCCSS-CCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETT
T ss_pred CCCceEEEeccCCCC-CCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCC
Confidence 975543332222222 47999999999999999999999999999 566777777 889999999999998 99999999
Q ss_pred CeEEEEECCC----CceeEEEeecCCcceEEEEECC-CCCEEEEEeCCCcEEEEeCCcccCCcceeeEEcccc-------
Q 043172 414 GQVYHWDLRT----RTCIHRAVDEGCINGTALCTSP-DGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENL------- 481 (564)
Q Consensus 414 g~V~lwD~~~----~~~~~~~~~~~~~~i~~l~~sp-~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~------- 481 (564)
+.|++||+++ +.++..+ .+...+++++|+| ++.+|++++.||.|+|||+... ..+..+..|
T Consensus 227 ~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~-----~~~~~~~~~~~~~~~~ 299 (383)
T 3ei3_B 227 ATVKLWDLRNIKDKNSYIAEM--PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDW-----SKPDQIIIHPHRQFQH 299 (383)
T ss_dssp SEEEEEEGGGCCSTTCEEEEE--ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBT-----TSCSEEEECCBCCCTT
T ss_pred CEEEEEeCCCCCcccceEEEe--cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCC-----cccccccccccccccc
Confidence 9999999997 5666655 3455789999999 9999999999999999999886 333333322
Q ss_pred cc----------ceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCC
Q 043172 482 TT----------KVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAG 551 (564)
Q Consensus 482 ~~----------~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG 551 (564)
.. .+..++|+|+|++ +++. |+.|+||++.+++.+..+... .+.+.+.+++|+|++.+|++|+ ||
T Consensus 300 ~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~--d~~i~iwd~~~~~~~~~l~~~-~~~~~~~~~~~s~~g~~l~s~s-d~ 373 (383)
T 3ei3_B 300 LTPIKATWHPMYDLIVAGRYPDDQL--LLND--KRTIDIYDANSGGLVHQLRDP-NAAGIISLNKFSPTGDVLASGM-GF 373 (383)
T ss_dssp SCCCCCEECSSSSEEEEECBCCTTT--CTTC--CCCEEEEETTTCCEEEEECBT-TBCSCCCEEEECTTSSEEEEEE-TT
T ss_pred ccceEEeccCCCCceEEEecCCccc--ccCC--CCeEEEEecCCCceeeeecCC-CCCceEEEEEEecCccEEEEec-CC
Confidence 22 3334555666655 4444 899999999999887766532 2346788889999999999997 99
Q ss_pred eEEEEEcCC
Q 043172 552 KVFLYKLNH 560 (564)
Q Consensus 552 ~V~lw~l~~ 560 (564)
.|+||++.+
T Consensus 374 ~i~iw~~~~ 382 (383)
T 3ei3_B 374 NILIWNRED 382 (383)
T ss_dssp EEEEEECC-
T ss_pred cEEEEecCC
Confidence 999999874
No 22
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.9e-38 Score=353.38 Aligned_cols=291 Identities=16% Similarity=0.241 Sum_probs=245.0
Q ss_pred CCCCCCCeeEEEEcCCC-CEEEEEeCCCcEEEEEecCCC---CceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEE
Q 043172 258 DESSTGPINSVQFHRNA-QLLLVAGLDRRLRFFQIDGKR---NTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSL 333 (564)
Q Consensus 258 ~~~h~~~V~~l~fspdg-~~l~s~s~dg~I~lwd~~~~~---~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iw 333 (564)
..+|.+.|++|+|+|++ .+|+||+.|++|+||++.... ......+.+|...|.+++|+|++++|++|+.|+.|++|
T Consensus 378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vw 457 (694)
T 3dm0_A 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLW 457 (694)
T ss_dssp EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 45799999999999964 799999999999999997432 23456788999999999999999999999999999999
Q ss_pred ECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee----ecCcEEEEEEecCC--CEE
Q 043172 334 DLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK----MNGTVRSLAFADDG--KQL 407 (564)
Q Consensus 334 dl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~----~~~~V~~l~~spdg--~~l 407 (564)
|+.++.... .+.+|.. .|.+++|+|++++|++++.|+.|++||+.......... |...|.+++|+|++ ..|
T Consensus 458 d~~~~~~~~--~~~~h~~-~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l 534 (694)
T 3dm0_A 458 DLAAGVSTR--RFVGHTK-DVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTI 534 (694)
T ss_dssp ETTTTEEEE--EEECCSS-CEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEE
T ss_pred ECCCCccee--EEeCCCC-CEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceE
Confidence 999987643 4566665 79999999999999999999999999987654443322 67789999999986 689
Q ss_pred EEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeE
Q 043172 408 LSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDF 487 (564)
Q Consensus 408 ~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~ 487 (564)
++++.|++|++||++++++...+..+. ..|++++|+|++++|++|+.||.|+|||+.++ +++..+.. ...|.+
T Consensus 535 ~s~s~d~~v~vwd~~~~~~~~~~~~h~-~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~-----~~~~~~~~-~~~v~~ 607 (694)
T 3dm0_A 535 VSASWDKTVKVWNLSNCKLRSTLAGHT-GYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG-----KKLYSLEA-NSVIHA 607 (694)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCCS-SCEEEEEECTTSSEEEEEETTSBCEEEETTTT-----EEEECCBC-SSCEEE
T ss_pred EEEeCCCeEEEEECCCCcEEEEEcCCC-CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-----ceEEEecC-CCcEEE
Confidence 999999999999999998887776554 47999999999999999999999999999987 77777664 568999
Q ss_pred EEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCC----------------CCCCCcEEEEEeCCCCEEEEEcCCC
Q 043172 488 MKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPAN----------------RNLQYPRCLDFSPGGGFMAVGNAAG 551 (564)
Q Consensus 488 l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~----------------~~~~~V~~l~fspdg~~Lasgs~dG 551 (564)
++|+|++.+|++++ ++.|+|||+.++..+..+.... .+...+++++|||+|++|++|+.||
T Consensus 608 ~~~sp~~~~l~~~~---~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg 684 (694)
T 3dm0_A 608 LCFSPNRYWLCAAT---EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDG 684 (694)
T ss_dssp EEECSSSSEEEEEE---TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTS
T ss_pred EEEcCCCcEEEEEc---CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCC
Confidence 99999999888776 5779999999987765443211 1223478999999999999999999
Q ss_pred eEEEEEcCCC
Q 043172 552 KVFLYKLNHY 561 (564)
Q Consensus 552 ~V~lw~l~~~ 561 (564)
.|+||++..|
T Consensus 685 ~i~iW~i~~~ 694 (694)
T 3dm0_A 685 VIRVWGIGRY 694 (694)
T ss_dssp EEEEEEC---
T ss_pred eEEEEeccCC
Confidence 9999999765
No 23
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-39 Score=335.83 Aligned_cols=314 Identities=12% Similarity=0.128 Sum_probs=258.2
Q ss_pred CccCCCeeeeeeeec--ccCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCC--CCceeEEEEeCCcCeEEEEEe
Q 043172 240 AKLSPGLLEYSRLID--ANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGK--RNTKIQSIFLEDCPVRKASFL 315 (564)
Q Consensus 240 ~~l~~~~~d~~rl~~--~~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~--~~~~~~~~~~~~~~I~~l~fs 315 (564)
..-...+|++..... ......|...|++++|+|++.+|++|+.|+.|++|++... ....+..+..|..+|.+++|+
T Consensus 43 ~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 122 (416)
T 2pm9_A 43 TDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFN 122 (416)
T ss_dssp CCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEEC
T ss_pred CCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEc
Confidence 344455666553221 1223458999999999999999999999999999999752 134677788899999999999
Q ss_pred eC-CCEEEEEeCCCeEEEEECCCCc------eee-eccccccCCcceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCcEE
Q 043172 316 PD-GSQAIIAGRRKFFYSLDLVKAK------ADK-IGPLVGREEKSLEFFEVSPD-SSVIAFVGNEGYILLVSSKTKELI 386 (564)
Q Consensus 316 pd-g~~l~s~~~dg~i~iwdl~~~~------~~~-~~~~~~~~~~~v~~~~~spd-g~~la~~~~dg~I~lwd~~t~~~~ 386 (564)
|+ +++|++++.++.|++||+.++. ... .....+|. ..|.+++|+|+ +.+|++++.+|.|++||+.+++.+
T Consensus 123 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~ 201 (416)
T 2pm9_A 123 AKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSV-DEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEV 201 (416)
T ss_dssp SSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSS-CCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEE
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCC-CCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcc
Confidence 98 8999999999999999999876 221 12223444 47999999999 789999999999999999999998
Q ss_pred EEee-e------cCcEEEEEEecCC-CEEEEEeCCC---eEEEEECCCC-ceeEEEeecCCcceEEEEECC-CCCEEEEE
Q 043172 387 GTLK-M------NGTVRSLAFADDG-KQLLSSGGDG---QVYHWDLRTR-TCIHRAVDEGCINGTALCTSP-DGTFFAAG 453 (564)
Q Consensus 387 ~~~~-~------~~~V~~l~~spdg-~~l~s~s~dg---~V~lwD~~~~-~~~~~~~~~~~~~i~~l~~sp-~g~~lasg 453 (564)
..+. + ...|.+++|+|++ .+|++++.++ .|++||++++ .++..+...+...+++++|+| ++++|++|
T Consensus 202 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~ 281 (416)
T 2pm9_A 202 IHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSS 281 (416)
T ss_dssp EEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEE
T ss_pred eEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEE
Confidence 8887 3 6789999999997 6899999998 9999999986 455555414455799999999 89999999
Q ss_pred eCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCC-cEEEEEecCCCCeEEEEEcCCCceeccC----------
Q 043172 454 SDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDA-QILAICSTMKKNSLKLIHIPSYNVFSNW---------- 522 (564)
Q Consensus 454 s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg-~~La~~s~~~d~~I~lwdl~s~~~~~~~---------- 522 (564)
+.||.|++||+.+. +++..+..|...|++++|+|++ .+|++++. |+.|+||++.+.......
T Consensus 282 ~~dg~v~~wd~~~~-----~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~--d~~i~iw~~~~~~~~~~~~~~~~~~~~~ 354 (416)
T 2pm9_A 282 GRDNTVLLWNPESA-----EQLSQFPARGNWCFKTKFAPEAPDLFACASF--DNKIEVQTLQNLTNTLDEQETETKQQES 354 (416)
T ss_dssp ESSSEEEEECSSSC-----CEEEEEECSSSCCCCEEECTTCTTEEEECCS--SSEEEEEESCCCCCSSCC----------
T ss_pred eCCCCEEEeeCCCC-----ccceeecCCCCceEEEEECCCCCCEEEEEec--CCcEEEEEccCCCCCcccccccccccCC
Confidence 99999999999987 8899999999999999999999 89999998 999999999876543221
Q ss_pred ----------------------CCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCCC
Q 043172 523 ----------------------PPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNHY 561 (564)
Q Consensus 523 ----------------------~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~~ 561 (564)
+....+...+++++|+|+|++|++|+.||.|+||++.+-
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 355 ETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp ------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred cccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 111124567889999999999999999999999998753
No 24
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.6e-38 Score=329.65 Aligned_cols=296 Identities=13% Similarity=0.087 Sum_probs=252.3
Q ss_pred cCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCC----CceeEEEEeCCcCeEEEEEeeC----C---CEEEEE
Q 043172 256 NADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKR----NTKIQSIFLEDCPVRKASFLPD----G---SQAIIA 324 (564)
Q Consensus 256 ~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~----~~~~~~~~~~~~~I~~l~fspd----g---~~l~s~ 324 (564)
....+|.++|++|+|+| .+|++|+.||+|+||++.... ...+..+..|..+|.+++|+|+ + ++|+++
T Consensus 10 ~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~ 87 (397)
T 1sq9_A 10 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT 87 (397)
T ss_dssp EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred hhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEE
Confidence 44678999999999999 899999999999999998654 3367888899999999999999 9 999999
Q ss_pred eCCCeEEEEECCCCcee---eeccccccC----CcceEEEEEc----CCCCE-EEEEeCCCeEEEEECCC------CcEE
Q 043172 325 GRRKFFYSLDLVKAKAD---KIGPLVGRE----EKSLEFFEVS----PDSSV-IAFVGNEGYILLVSSKT------KELI 386 (564)
Q Consensus 325 ~~dg~i~iwdl~~~~~~---~~~~~~~~~----~~~v~~~~~s----pdg~~-la~~~~dg~I~lwd~~t------~~~~ 386 (564)
+.++.|++|++.++... .+..+..+. ...|.+++|+ |++.+ |++++.+|.|++||+.+ ++.+
T Consensus 88 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 167 (397)
T 1sq9_A 88 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL 167 (397)
T ss_dssp ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred cCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccccee
Confidence 99999999999887630 012234442 3479999999 99999 99999999999999988 6554
Q ss_pred E-----Eee--------ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEee---c--CCcceEEEEECCCCC
Q 043172 387 G-----TLK--------MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVD---E--GCINGTALCTSPDGT 448 (564)
Q Consensus 387 ~-----~~~--------~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~---~--~~~~i~~l~~sp~g~ 448 (564)
. .+. |...|.+++|+|++ +|++++.||.|++||+++++++..+.. + ....+.+++|+|+++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~ 246 (397)
T 1sq9_A 168 NWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS 246 (397)
T ss_dssp CCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTT
T ss_pred eccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCC
Confidence 4 442 67889999999999 999999999999999999998888775 3 045789999999999
Q ss_pred EEEEEeCC---CcEEEEeCCcccCCcceeeEEccc-------------cccceeEEEEcCCCcEEEEEecCCCCeEEEEE
Q 043172 449 FFAAGSDS---GIVNVYNRQEFLGGKRKPIKTIEN-------------LTTKVDFMKFNNDAQILAICSTMKKNSLKLIH 512 (564)
Q Consensus 449 ~lasgs~d---g~V~iwd~~~~~~~~~~~~~~~~~-------------~~~~I~~l~fspdg~~La~~s~~~d~~I~lwd 512 (564)
+|++++.+ |.|++||+... +++..+.. |...|.+++|+|++++|++++. |+.|++|+
T Consensus 247 ~l~~~~~d~~~g~i~i~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd 319 (397)
T 1sq9_A 247 LLAIAHDSNSFGCITLYETEFG-----ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW--DGKLRFWD 319 (397)
T ss_dssp EEEEEEEETTEEEEEEEETTTC-----CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEET--TSEEEEEE
T ss_pred EEEEEecCCCCceEEEEECCCC-----cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeC--CCeEEEEE
Confidence 99999999 99999999987 78888888 9999999999999999999998 99999999
Q ss_pred cCCCceeccCCCCC---CC---------------CCCcEEEEEeCCC----------CEEEEEcCCCeEEEEEcCCC
Q 043172 513 IPSYNVFSNWPPAN---RN---------------LQYPRCLDFSPGG----------GFMAVGNAAGKVFLYKLNHY 561 (564)
Q Consensus 513 l~s~~~~~~~~~~~---~~---------------~~~V~~l~fspdg----------~~Lasgs~dG~V~lw~l~~~ 561 (564)
+.+++.+..+.... .| ...|++++|+|+| .+|++|+.||.|++|++.+.
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 320 VKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp TTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred cCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 99998887765110 22 6889999999998 79999999999999999765
No 25
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-37 Score=317.69 Aligned_cols=285 Identities=12% Similarity=0.136 Sum_probs=248.0
Q ss_pred CCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCC
Q 043172 258 DESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVK 337 (564)
Q Consensus 258 ~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~ 337 (564)
..+|.++|++++|+|++++|++|+.||.|++|++. ....+..+..|..+|.+++|+|++++|++++.++.|++||+.+
T Consensus 28 l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 105 (369)
T 3zwl_B 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSL--NGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSN 105 (369)
T ss_dssp EECCSSCEEEEEECTTSCEEEEEESSSCEEEEETT--TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT
T ss_pred EEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCC--CchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 34699999999999999999999999999999987 4457788889999999999999999999999999999999999
Q ss_pred CceeeeccccccCCcceEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCcE-----------EEEee-ecC--cEEEE
Q 043172 338 AKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNE-----GYILLVSSKTKEL-----------IGTLK-MNG--TVRSL 398 (564)
Q Consensus 338 ~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-----g~I~lwd~~t~~~-----------~~~~~-~~~--~V~~l 398 (564)
++...... +. ..+.+++|+|++.+|++++.+ |.|.+|++.+... +..+. +.+ .+.++
T Consensus 106 ~~~~~~~~---~~-~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (369)
T 3zwl_B 106 GQCVATWK---SP-VPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVA 181 (369)
T ss_dssp CCEEEEEE---CS-SCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEE
T ss_pred CcEEEEee---cC-CCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEE
Confidence 88755432 23 379999999999999999998 9999999976532 22222 444 89999
Q ss_pred EEecCCCEEEEEeCCCeEEEEECCC-CceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEE
Q 043172 399 AFADDGKQLLSSGGDGQVYHWDLRT-RTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKT 477 (564)
Q Consensus 399 ~~spdg~~l~s~s~dg~V~lwD~~~-~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~ 477 (564)
+|+|++++|++++.+|.|++||+++ ...+..+..+ ...+.+++|+|++++|++++.+|.|++||+... +.+..
T Consensus 182 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~-----~~~~~ 255 (369)
T 3zwl_B 182 GWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLH-EKSISDMQFSPDLTYFITSSRDTNSFLVDVSTL-----QVLKK 255 (369)
T ss_dssp EECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECC-SSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-----CEEEE
T ss_pred EEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecC-CCceeEEEECCCCCEEEEecCCceEEEEECCCC-----ceeee
Confidence 9999999999999999999999998 5666666544 457899999999999999999999999999987 67766
Q ss_pred ccccccceeEEEEcCCCcEEEEEecCCCC--------------eEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCE
Q 043172 478 IENLTTKVDFMKFNNDAQILAICSTMKKN--------------SLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGF 543 (564)
Q Consensus 478 ~~~~~~~I~~l~fspdg~~La~~s~~~d~--------------~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~ 543 (564)
+. +...+.+++|+|+++++++++. ++ .+++|++.++..+..+. .|.+.|++++|+|++++
T Consensus 256 ~~-~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~---~~~~~v~~~~~s~~~~~ 329 (369)
T 3zwl_B 256 YE-TDCPLNTAVITPLKEFIILGGG--QEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQ---GHFGPLNTVAISPQGTS 329 (369)
T ss_dssp EE-CSSCEEEEEECSSSSEEEEEEC--CC-------------CEEEEEETTTCCEEEEEE---CCSSCEEEEEECTTSSE
T ss_pred ec-CCCCceeEEecCCCceEEEeec--CCCceEEEEecCCCcceeEEEecCCCcchhhee---cccCcEEEEEECCCCCE
Confidence 66 6789999999999999999998 56 89999999998877654 35588999999999999
Q ss_pred EEEEcCCCeEEEEEcCC
Q 043172 544 MAVGNAAGKVFLYKLNH 560 (564)
Q Consensus 544 Lasgs~dG~V~lw~l~~ 560 (564)
|++|+.||.|+||++..
T Consensus 330 l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 330 YASGGEDGFIRLHHFEK 346 (369)
T ss_dssp EEEEETTSEEEEEEECH
T ss_pred EEEEcCCCeEEEEECcc
Confidence 99999999999999864
No 26
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.9e-38 Score=317.73 Aligned_cols=270 Identities=19% Similarity=0.227 Sum_probs=238.0
Q ss_pred CCeEEcCCCccCCCeeeee--eeecccCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCe
Q 043172 232 EDLVVKSSAKLSPGLLEYS--RLIDANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPV 309 (564)
Q Consensus 232 ~~~~~~~~~~l~~~~~d~~--rl~~~~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I 309 (564)
+.++++++.+-...+|++. ++.......+|...|.+++|+|++.++++++.|++|+|||+.. ...+..+..+...+
T Consensus 48 ~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~--~~~~~~~~~~~~~~ 125 (321)
T 3ow8_A 48 SETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLEN--GKQIKSIDAGPVDA 125 (321)
T ss_dssp -CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT--TEEEEEEECCTTCC
T ss_pred CCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC--CCEEEEEeCCCccE
Confidence 4456666666666777764 3333334678999999999999999999999999999999874 45777888888899
Q ss_pred EEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Q 043172 310 RKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTL 389 (564)
Q Consensus 310 ~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~ 389 (564)
.+++|+|++++|++++.++.|++|++.++.... .+..+. ..+.+++|+|++++|++++.||.|++||+.+++.+..+
T Consensus 126 ~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~--~~~~~~-~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~ 202 (321)
T 3ow8_A 126 WTLAFSPDSQYLATGTHVGKVNIFGVESGKKEY--SLDTRG-KFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTL 202 (321)
T ss_dssp CCEEECTTSSEEEEECTTSEEEEEETTTCSEEE--EEECSS-SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred EEEEECCCCCEEEEEcCCCcEEEEEcCCCceeE--EecCCC-ceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE
Confidence 999999999999999999999999999987643 244443 37999999999999999999999999999999999988
Q ss_pred e-ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCccc
Q 043172 390 K-MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFL 468 (564)
Q Consensus 390 ~-~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~ 468 (564)
. |...|++++|+|++++|++++.|+.|++||++++.++..+..+. ..|.+++|+|++.+|++|+.||.|+|||+.+.
T Consensus 203 ~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~-~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~- 280 (321)
T 3ow8_A 203 EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHA-SWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR- 280 (321)
T ss_dssp CCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCS-SCEEEEEECTTSSEEEEEETTSCEEEEETTTT-
T ss_pred cccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCC-CceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-
Confidence 8 88899999999999999999999999999999998887776544 47899999999999999999999999999987
Q ss_pred CCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcC
Q 043172 469 GGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIP 514 (564)
Q Consensus 469 ~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~ 514 (564)
+++.++.+|...|++++|+|++++|++++. |+.|+|||++
T Consensus 281 ----~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~--d~~i~vwd~p 320 (321)
T 3ow8_A 281 ----TCVHTFFDHQDQVWGVKYNGNGSKIVSVGD--DQEIHIYDCP 320 (321)
T ss_dssp ----EEEEEECCCSSCEEEEEECTTSSEEEEEET--TCCEEEEECC
T ss_pred ----EEEEEEcCCCCcEEEEEECCCCCEEEEEeC--CCeEEEEeCC
Confidence 899999999999999999999999999998 9999999975
No 27
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=4e-38 Score=330.00 Aligned_cols=274 Identities=19% Similarity=0.291 Sum_probs=241.8
Q ss_pred cccCCCeEEcCCCccCCCeeeeeeeecccCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCc
Q 043172 228 LRTDEDLVVKSSAKLSPGLLEYSRLIDANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDC 307 (564)
Q Consensus 228 l~~~~~~~~~~~~~l~~~~~d~~rl~~~~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~ 307 (564)
+...+.++++++..-...+||+..........+|...|++++|+|++++|++|+.|++|+||++.. ...+..+.+|..
T Consensus 116 ~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~--~~~~~~~~~h~~ 193 (410)
T 1vyh_C 116 FHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG--FECIRTMHGHDH 193 (410)
T ss_dssp ECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS--SCEEECCCCCSS
T ss_pred EcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC--CceeEEEcCCCC
Confidence 444566666666666667777765555556678999999999999999999999999999999874 457778889999
Q ss_pred CeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE
Q 043172 308 PVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIG 387 (564)
Q Consensus 308 ~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~ 387 (564)
.|.+++|+|++++|++++.|+.|++||+.++.... .+.+|.. .|.++.++|++.+|++++.||.|++||+.+++...
T Consensus 194 ~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~--~~~~h~~-~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~ 270 (410)
T 1vyh_C 194 NVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVK--TFTGHRE-WVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKA 270 (410)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE--EEECCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE--EEeCCCc-cEEEEEECCCCCEEEEEcCCCeEEEEECCCCceee
Confidence 99999999999999999999999999999988644 4566655 79999999999999999999999999999999988
Q ss_pred Eee-ecCcEEEEEEecC--------------------CCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCC
Q 043172 388 TLK-MNGTVRSLAFADD--------------------GKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPD 446 (564)
Q Consensus 388 ~~~-~~~~V~~l~~spd--------------------g~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~ 446 (564)
.+. |...|.+++|+|+ +.+|++|+.|+.|++||++++.++..+..+. ..|++++|+|+
T Consensus 271 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~-~~v~~v~~~~~ 349 (410)
T 1vyh_C 271 ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHD-NWVRGVLFHSG 349 (410)
T ss_dssp EECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCS-SCEEEEEECSS
T ss_pred EecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCC-CcEEEEEEcCC
Confidence 887 8899999999996 6789999999999999999999988887554 47899999999
Q ss_pred CCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcC
Q 043172 447 GTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIP 514 (564)
Q Consensus 447 g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~ 514 (564)
|++|++|+.||.|+|||+... +++.++.+|...|++++|+|++.+|++|+. |+.|+||+++
T Consensus 350 g~~l~s~s~D~~i~vwd~~~~-----~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~--D~~i~vW~~r 410 (410)
T 1vyh_C 350 GKFILSCADDKTLRVWDYKNK-----RCMKTLNAHEHFVTSLDFHKTAPYVVTGSV--DQTVKVWECR 410 (410)
T ss_dssp SSCEEEEETTTEEEEECCTTS-----CCCEEEECCSSCEEEEEECSSSSCEEEEET--TSEEEEEC--
T ss_pred CCEEEEEeCCCeEEEEECCCC-----ceEEEEcCCCCcEEEEEEcCCCCEEEEEeC--CCcEEEEeCC
Confidence 999999999999999999887 888999999999999999999999999999 9999999863
No 28
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3.5e-37 Score=335.96 Aligned_cols=281 Identities=23% Similarity=0.327 Sum_probs=247.2
Q ss_pred CCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECC
Q 043172 257 ADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLV 336 (564)
Q Consensus 257 ~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~ 336 (564)
...+|..+|++++|+|++++|++++.|+.|++|+..+ ..+..+.+|..+|.+++|+|++++|++++.++.|++|++.
T Consensus 257 ~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~ 333 (577)
T 2ymu_A 257 TLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG---QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 333 (577)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS---CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC---cEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 3467999999999999999999999999999999753 4677788999999999999999999999999999999987
Q ss_pred CCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEeCCCe
Q 043172 337 KAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQ 415 (564)
Q Consensus 337 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~ 415 (564)
..... .+.+|.. .+.+++|+|++++|++++.+|.|++|+. +++.+..+. |...|++++|+|++++|++++.|+.
T Consensus 334 ~~~~~---~~~~~~~-~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~ 408 (577)
T 2ymu_A 334 GQHLQ---TLTGHSS-SVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT 408 (577)
T ss_dssp SCEEE---EECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSE
T ss_pred CCeeE---EEeCCCC-CEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCE
Confidence 76543 3455554 7999999999999999999999999995 567777776 8899999999999999999999999
Q ss_pred EEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCc
Q 043172 416 VYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQ 495 (564)
Q Consensus 416 V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~ 495 (564)
|++||. +++.+..+..+ ...+++++|+|++++|++++.|+.|++|+... +.+..+.+|...|++++|+|+++
T Consensus 409 v~~~~~-~~~~~~~~~~~-~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~------~~~~~~~~~~~~v~~~~~spd~~ 480 (577)
T 2ymu_A 409 VKLWNR-NGQLLQTLTGH-SSSVWGVAFSPDDQTIASASDDKTVKLWNRNG------QLLQTLTGHSSSVRGVAFSPDGQ 480 (577)
T ss_dssp EEEECT-TCCEEEEEECC-SSCEEEEEECTTSSEEEEEETTSEEEEEETTS------CEEEEEECCSSCEEEEEECTTSC
T ss_pred EEEEeC-CCCEEEEecCC-CCCeEEEEECCCCCEEEEEcCCCEEEEEECCC------CEEEEEcCCCCCEEEEEEcCCCC
Confidence 999996 46666666644 45789999999999999999999999999754 67888899999999999999999
Q ss_pred EEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q 043172 496 ILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLN 559 (564)
Q Consensus 496 ~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~ 559 (564)
+|++++. |+.|+||+. ++..+..+. .|...|++++|+|+|++||+++.||.|+||++.
T Consensus 481 ~las~~~--d~~i~iw~~-~~~~~~~~~---~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~ 538 (577)
T 2ymu_A 481 TIASASD--DKTVKLWNR-NGQLLQTLT---GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 538 (577)
T ss_dssp EEEEEET--TSEEEEEET-TSCEEEEEE---CCSSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred EEEEEeC--CCEEEEEcC-CCCEEEEEe---CCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC
Confidence 9999998 999999996 566665543 456889999999999999999999999999963
No 29
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9e-38 Score=325.59 Aligned_cols=283 Identities=14% Similarity=0.171 Sum_probs=246.7
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCce
Q 043172 261 STGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKA 340 (564)
Q Consensus 261 h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~ 340 (564)
|.+.|++++|+|++++|++|+.||.|++|+. ....+..+..|..+|.+++|+|++++|++++.++.|++||+.+++.
T Consensus 107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 183 (425)
T 1r5m_A 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNK---TGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTV 183 (425)
T ss_dssp -CBCEEEEEECTTSSEEEEEETTSCEEEEET---TSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEE
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEeC---CCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcE
Confidence 6889999999999999999999999999983 4457788888999999999999999999999999999999999876
Q ss_pred eeeccccccCC------------cceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCCEE
Q 043172 341 DKIGPLVGREE------------KSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQL 407 (564)
Q Consensus 341 ~~~~~~~~~~~------------~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l 407 (564)
........... ..+.+++|+|++ .+++++.+|.|++||+.+++.+..+. |...|.+++|+|++++|
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 262 (425)
T 1r5m_A 184 MQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLL 262 (425)
T ss_dssp EEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEE
T ss_pred EEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEE
Confidence 54332221110 017889999875 58888999999999999998888776 88999999999999999
Q ss_pred EEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeE
Q 043172 408 LSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDF 487 (564)
Q Consensus 408 ~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~ 487 (564)
++++.||.|++||+.+++++..+..+ ...+.+++|+|++ +|++++.+|.|++||+... +++..+..|...|.+
T Consensus 263 ~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~-----~~~~~~~~~~~~i~~ 335 (425)
T 1r5m_A 263 LSASDDGTLRIWHGGNGNSQNCFYGH-SQSIVSASWVGDD-KVISCSMDGSVRLWSLKQN-----TLLALSIVDGVPIFA 335 (425)
T ss_dssp EEEETTSCEEEECSSSBSCSEEECCC-SSCEEEEEEETTT-EEEEEETTSEEEEEETTTT-----EEEEEEECTTCCEEE
T ss_pred EEEcCCCEEEEEECCCCccceEecCC-CccEEEEEECCCC-EEEEEeCCCcEEEEECCCC-----cEeEecccCCccEEE
Confidence 99999999999999998888877644 4478999999999 9999999999999999887 888888899999999
Q ss_pred EEEcCCCcEEEEEecCCCCeEEEEEcCCCc--------------------eeccCCCCCCCCC--CcEEEEEeCCCCEEE
Q 043172 488 MKFNNDAQILAICSTMKKNSLKLIHIPSYN--------------------VFSNWPPANRNLQ--YPRCLDFSPGGGFMA 545 (564)
Q Consensus 488 l~fspdg~~La~~s~~~d~~I~lwdl~s~~--------------------~~~~~~~~~~~~~--~V~~l~fspdg~~La 545 (564)
++|+|++++|++++. ++.|++|++.++. .+..+.. |.. .|++++|+|++++|+
T Consensus 336 ~~~s~~~~~l~~~~~--dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~ 410 (425)
T 1r5m_A 336 GRISQDGQKYAVAFM--DGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQS---SQDNDYIFDLSWNCAGNKIS 410 (425)
T ss_dssp EEECTTSSEEEEEET--TSCEEEEECHHHHC--------------CEECCEEEEECC---TTCCCCEEEEEECTTSSEEE
T ss_pred EEEcCCCCEEEEEEC--CCeEEEEECCCCccceeeeecccccccCcccchhhhhhcC---cccCCceEEEEccCCCceEE
Confidence 999999999999998 9999999998877 5554433 333 899999999999999
Q ss_pred EEcCCCeEEEEEcC
Q 043172 546 VGNAAGKVFLYKLN 559 (564)
Q Consensus 546 sgs~dG~V~lw~l~ 559 (564)
+++.||.|++|++.
T Consensus 411 ~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 411 VAYSLQEGSVVAIP 424 (425)
T ss_dssp EEESSSCCEEEECC
T ss_pred EEecCceEEEEeec
Confidence 99999999999985
No 30
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.7e-38 Score=335.24 Aligned_cols=294 Identities=13% Similarity=0.116 Sum_probs=232.4
Q ss_pred CCCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEee-CCCEEEEEeCCCeEEEEECC
Q 043172 259 ESSTGPINSVQFHR-NAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLP-DGSQAIIAGRRKFFYSLDLV 336 (564)
Q Consensus 259 ~~h~~~V~~l~fsp-dg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fsp-dg~~l~s~~~dg~i~iwdl~ 336 (564)
.+|...|+||+||| ++.+||+|+.||+|+|||+.......+..+.+|..+|++++|+| ++++|++++.|++|++||+.
T Consensus 116 ~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~ 195 (435)
T 4e54_B 116 APFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFK 195 (435)
T ss_dssp EECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETT
T ss_pred CCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeecc
Confidence 45889999999999 56799999999999999998766666666778999999999998 78999999999999999998
Q ss_pred CCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCC-EEEEEeCCC
Q 043172 337 KAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGK-QLLSSGGDG 414 (564)
Q Consensus 337 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~-~l~s~s~dg 414 (564)
++....+.....+ ...+.+++|+|++.+|++|+.+|.|++||+... .+..+. |...|++++|+|++. +|++++.|+
T Consensus 196 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~ 273 (435)
T 4e54_B 196 GNILRVFASSDTI-NIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK-ELWNLRMHKKKVTHVALNPCCDWFLATASVDQ 273 (435)
T ss_dssp SCEEEEEECCSSC-SCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-BCCCSBCCSSCEEEEEECTTCSSEEEEEETTS
T ss_pred CCceeEEeccCCC-CccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-eeEEEecccceEEeeeecCCCceEEEEecCcc
Confidence 7765433222222 235778999999999999999999999998754 444555 889999999999876 788899999
Q ss_pred eEEEEECCCCceeEEEe--ecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEcccccc------cee
Q 043172 415 QVYHWDLRTRTCIHRAV--DEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTT------KVD 486 (564)
Q Consensus 415 ~V~lwD~~~~~~~~~~~--~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~------~I~ 486 (564)
.|++||+++.+....+. ..+...|++++|+|+|.+|++|+.||.|+|||+..+ .....+..|.. .+.
T Consensus 274 ~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~ 348 (435)
T 4e54_B 274 TVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQW-----DCPLGLIPHPHRHFQHLTPI 348 (435)
T ss_dssp BCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSS-----SSEEEECCCCCCCCSSSCCC
T ss_pred eeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCC-----ccceEEecccccccccceeE
Confidence 99999999876544332 235557999999999999999999999999999886 44444433321 234
Q ss_pred EEEEcCCCcEEEEEecC----------CCCeEEEEEcCCCceeccCCCCCCCCCCcEEE-EEeCCCCEEEEEcCCCeEEE
Q 043172 487 FMKFNNDAQILAICSTM----------KKNSLKLIHIPSYNVFSNWPPANRNLQYPRCL-DFSPGGGFMAVGNAAGKVFL 555 (564)
Q Consensus 487 ~l~fspdg~~La~~s~~----------~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l-~fspdg~~Lasgs~dG~V~l 555 (564)
.+.|+|++.++++++.. .++.|++|++.++..+..+. ..|...|.++ +|+|+|.+|++|+ |+.|+|
T Consensus 349 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~--~~~~~~v~s~~~fspdg~~lasg~-d~~i~i 425 (435)
T 4e54_B 349 KAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLY--DPESSGISSLNEFNPMGDTLASAM-GYHILI 425 (435)
T ss_dssp BCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEEC--CSSCCCCCCEEEECTTSSCEEEEC-SSEEEE
T ss_pred EEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEe--CCCCCcEEEEEEECCCCCEEEEEc-CCcEEE
Confidence 56778887777776532 13579999999998876543 2345667777 6999999999886 789999
Q ss_pred EEcCCCC
Q 043172 556 YKLNHYH 562 (564)
Q Consensus 556 w~l~~~~ 562 (564)
|++...+
T Consensus 426 W~~~~gk 432 (435)
T 4e54_B 426 WSQQEAR 432 (435)
T ss_dssp CCCC---
T ss_pred EECCcCe
Confidence 9998764
No 31
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=4.3e-37 Score=313.74 Aligned_cols=273 Identities=14% Similarity=0.177 Sum_probs=233.6
Q ss_pred ccCCCeEEcCCCccCCCeeeeeeeecccCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCC--ceeEEEEeCC
Q 043172 229 RTDEDLVVKSSAKLSPGLLEYSRLIDANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRN--TKIQSIFLED 306 (564)
Q Consensus 229 ~~~~~~~~~~~~~l~~~~~d~~rl~~~~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~--~~~~~~~~~~ 306 (564)
...+.++++++..-...+|+............|...|.+++|+|++++|++|+.|+.|++|++..... .....+.+|.
T Consensus 64 s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~ 143 (340)
T 1got_B 64 GTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHT 143 (340)
T ss_dssp CTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCS
T ss_pred CCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCC
Confidence 34455555555555555666543333334457999999999999999999999999999999875432 3456678899
Q ss_pred cCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE
Q 043172 307 CPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELI 386 (564)
Q Consensus 307 ~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~ 386 (564)
..|.++.|++++ .+++++.|+.|++||+.+++... .+.+|.. .|.+++|+|++++|++++.||.|++||++++..+
T Consensus 144 ~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~~~--~~~~h~~-~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~ 219 (340)
T 1got_B 144 GYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQTT--TFTGHTG-DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR 219 (340)
T ss_dssp SCEEEEEEEETT-EEEEEETTSCEEEEETTTTEEEE--EECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTCSEE
T ss_pred ccEEEEEECCCC-cEEEEECCCcEEEEECCCCcEEE--EEcCCCC-ceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeE
Confidence 999999999887 58899999999999999988643 4556655 7999999999999999999999999999999999
Q ss_pred EEee-ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecC-CcceEEEEECCCCCEEEEEeCCCcEEEEeC
Q 043172 387 GTLK-MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEG-CINGTALCTSPDGTFFAAGSDSGIVNVYNR 464 (564)
Q Consensus 387 ~~~~-~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~-~~~i~~l~~sp~g~~lasgs~dg~V~iwd~ 464 (564)
..+. |...|++++|+|++++|++++.||+|++||+++++.+..+.... ...+++++|+|+|++|++|+.||.|+|||+
T Consensus 220 ~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~ 299 (340)
T 1got_B 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299 (340)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred EEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEc
Confidence 8887 88999999999999999999999999999999988877665432 336899999999999999999999999999
Q ss_pred CcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEE
Q 043172 465 QEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIH 512 (564)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwd 512 (564)
... .++..+.+|..+|++++|+|+|.+|++|+. |+.|+||+
T Consensus 300 ~~~-----~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~--D~~i~iWd 340 (340)
T 1got_B 300 LKA-----DRAGVLAGHDNRVSCLGVTDDGMAVATGSW--DSFLKIWN 340 (340)
T ss_dssp TTC-----CEEEEEECCSSCEEEEEECTTSSCEEEEET--TSCEEEEC
T ss_pred ccC-----cEeeEeecCCCcEEEEEEcCCCCEEEEEcC--CccEEecC
Confidence 887 788899999999999999999999999999 99999996
No 32
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-36 Score=304.02 Aligned_cols=282 Identities=12% Similarity=0.165 Sum_probs=243.8
Q ss_pred CCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECC
Q 043172 257 ADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLV 336 (564)
Q Consensus 257 ~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~ 336 (564)
...+|.++|++++| |++.+|++|+.||.|++|++. .......+..|..+|.+++|+|++++|++++.++.|++|++.
T Consensus 13 ~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~ 89 (313)
T 3odt_A 13 TLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKD--DQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLF 89 (313)
T ss_dssp EECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEES--SSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred HhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECC--CCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEee
Confidence 45679999999999 999999999999999999996 445677788899999999999999999999999999999988
Q ss_pred CCcee-eeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEec-CCCEEEEEeCC
Q 043172 337 KAKAD-KIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFAD-DGKQLLSSGGD 413 (564)
Q Consensus 337 ~~~~~-~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~sp-dg~~l~s~s~d 413 (564)
..... .+..+.+|.. .|.++.| ++++|++++.+|.|++|| .++.+..+. |...+.+++|+| ++.+|++++.|
T Consensus 90 ~~~~~~~~~~~~~~~~-~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 164 (313)
T 3odt_A 90 ATSGEDPLYTLIGHQG-NVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASAD 164 (313)
T ss_dssp CCTTSCC-CEECCCSS-CEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETT
T ss_pred ecCCCCcccchhhccc-CEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECC
Confidence 75322 2333445554 7999999 578999999999999999 666666666 889999999999 89999999999
Q ss_pred CeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCC
Q 043172 414 GQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNND 493 (564)
Q Consensus 414 g~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspd 493 (564)
|.|++|| ....+..+...+...+.+++|+|++. +++|+.+|.|++||+... +++..+..|...|++++|+|+
T Consensus 165 ~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~i~~~~~~~~ 236 (313)
T 3odt_A 165 KTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTG-----DVLRTYEGHESFVYCIKLLPN 236 (313)
T ss_dssp SCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTC-----CEEEEEECCSSCEEEEEECTT
T ss_pred CCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCch-----hhhhhhhcCCceEEEEEEecC
Confidence 9999999 45666667665666899999999998 999999999999999987 888999999999999999999
Q ss_pred CcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCCC
Q 043172 494 AQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNHY 561 (564)
Q Consensus 494 g~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~~ 561 (564)
+ .|++++. ++.|++|++.+++....+.. |...|++++|+|++. +++++.||.|++|++...
T Consensus 237 ~-~l~~~~~--dg~v~iwd~~~~~~~~~~~~---~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~ 297 (313)
T 3odt_A 237 G-DIVSCGE--DRTVRIWSKENGSLKQVITL---PAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKS 297 (313)
T ss_dssp S-CEEEEET--TSEEEEECTTTCCEEEEEEC---SSSCEEEEEECTTSC-EEEEETTSCEEEEESCGG
T ss_pred C-CEEEEec--CCEEEEEECCCCceeEEEec---cCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCC
Confidence 9 5778887 99999999999988776644 346899999999998 556889999999999764
No 33
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.2e-37 Score=318.19 Aligned_cols=292 Identities=14% Similarity=0.205 Sum_probs=241.0
Q ss_pred CCCCCCeeEEEEcCC----CCEEEEEeCCCcEEEEEecCCCCceeEEEEe-----CCcCeEEEEEeeC----CCEEEEEe
Q 043172 259 ESSTGPINSVQFHRN----AQLLLVAGLDRRLRFFQIDGKRNTKIQSIFL-----EDCPVRKASFLPD----GSQAIIAG 325 (564)
Q Consensus 259 ~~h~~~V~~l~fspd----g~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~-----~~~~I~~l~fspd----g~~l~s~~ 325 (564)
.+|.++|++++|+|+ ..++++++.++.|+||++... ..+..+.. |...|.+++|+|+ +.+|++++
T Consensus 15 ~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 92 (366)
T 3k26_A 15 EDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQ--GEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG 92 (366)
T ss_dssp CTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGG--GCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred cCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCC--cEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence 479999999999994 456677777889999999743 33444433 5578999999998 67999999
Q ss_pred CCCeEEEEECCCCceeeeccccccCCcceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEe----eecCcEEEEEE
Q 043172 326 RRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSP-DSSVIAFVGNEGYILLVSSKTKELIGTL----KMNGTVRSLAF 400 (564)
Q Consensus 326 ~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~la~~~~dg~I~lwd~~t~~~~~~~----~~~~~V~~l~~ 400 (564)
.++.|++||+.+++... .+.+|.. .|.+++|+| ++.+|++++.+|.|++||+.+++.+..+ .|...|.+++|
T Consensus 93 ~dg~i~v~d~~~~~~~~--~~~~~~~-~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 169 (366)
T 3k26_A 93 SRGIIRIINPITMQCIK--HYVGHGN-AINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY 169 (366)
T ss_dssp TTCEEEEECTTTCCEEE--EEESCCS-CEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEE
T ss_pred CCCEEEEEEchhceEee--eecCCCC-cEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEE
Confidence 99999999999987644 3555554 799999999 9999999999999999999999999887 38899999999
Q ss_pred ecCCCEEEEEeCCCeEEEEECCCCceeEEEee---------------------------cCCcceEEEEECCCCCEEEEE
Q 043172 401 ADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVD---------------------------EGCINGTALCTSPDGTFFAAG 453 (564)
Q Consensus 401 spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~---------------------------~~~~~i~~l~~sp~g~~lasg 453 (564)
+|++++|++++.||.|++||+++++.+..+.. .+...+.+++|+ +.+|+++
T Consensus 170 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~ 247 (366)
T 3k26_A 170 DLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSK 247 (366)
T ss_dssp CTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEE
T ss_pred CCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEE
Confidence 99999999999999999999998765432221 145578899998 7799999
Q ss_pred eCCCcEEEEeCCcccC---------CcceeeEEccccccceeEEEEcCC--CcEEEEEecCCCCeEEEEEcCCCceec--
Q 043172 454 SDSGIVNVYNRQEFLG---------GKRKPIKTIENLTTKVDFMKFNND--AQILAICSTMKKNSLKLIHIPSYNVFS-- 520 (564)
Q Consensus 454 s~dg~V~iwd~~~~~~---------~~~~~~~~~~~~~~~I~~l~fspd--g~~La~~s~~~d~~I~lwdl~s~~~~~-- 520 (564)
+.+|.|++||+..... .....+..+..|...|++++|+|+ +++|++++. ++.|++|++.++....
T Consensus 248 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~ 325 (366)
T 3k26_A 248 SCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQ--VGKLYVWDLEVEDPHKAK 325 (366)
T ss_dssp CSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECT--TSCEEEEECCSSSGGGCE
T ss_pred ecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEec--CCcEEEEECCCCCCcccc
Confidence 9999999999987521 122457778889999999999999 999999998 9999999999876443
Q ss_pred --cCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCC
Q 043172 521 --NWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNH 560 (564)
Q Consensus 521 --~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~ 560 (564)
.+..+ .+...|++++|+|++++|++|+.||.|+||++.+
T Consensus 326 ~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 326 CTTLTHH-KCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp EEEECCT-TCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred ceEEccc-ccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 23222 2358899999999999999999999999999863
No 34
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=9.8e-38 Score=318.06 Aligned_cols=291 Identities=11% Similarity=0.116 Sum_probs=234.5
Q ss_pred CCCCCCeeEEEEcCCCCEE-EEEeC---CCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeC---CCEEEEEeCCCeEE
Q 043172 259 ESSTGPINSVQFHRNAQLL-LVAGL---DRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPD---GSQAIIAGRRKFFY 331 (564)
Q Consensus 259 ~~h~~~V~~l~fspdg~~l-~s~s~---dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspd---g~~l~s~~~dg~i~ 331 (564)
.+|..+|++++|+|++..+ ++|+. |+.|+||++......... ...|..+|.+++|+|+ +++|++++.++.|+
T Consensus 15 ~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~ 93 (357)
T 3i2n_A 15 KGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLR-EIEKAKPIKCGTFGATSLQQRYLATGDFGGNLH 93 (357)
T ss_dssp EECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEE-EEEESSCEEEEECTTCCTTTCCEEEEETTSCEE
T ss_pred cCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccccee-eecccCcEEEEEEcCCCCCCceEEEecCCCeEE
Confidence 3599999999999999655 55655 899999999865432222 3368899999999998 69999999999999
Q ss_pred EEECCCCc-eeeeccccccCCcceEEEE------EcCCCCEEEEEeCCCeEEEEECCCCc-EEEEee-ec----CcEEEE
Q 043172 332 SLDLVKAK-ADKIGPLVGREEKSLEFFE------VSPDSSVIAFVGNEGYILLVSSKTKE-LIGTLK-MN----GTVRSL 398 (564)
Q Consensus 332 iwdl~~~~-~~~~~~~~~~~~~~v~~~~------~spdg~~la~~~~dg~I~lwd~~t~~-~~~~~~-~~----~~V~~l 398 (564)
+||+.++. . +..+.+|.. .|.++. |+|++++|++++.+|.|++||+.++. .+..+. +. ..|.++
T Consensus 94 iwd~~~~~~~--~~~~~~~~~-~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~ 170 (357)
T 3i2n_A 94 IWNLEAPEMP--VYSVKGHKE-IINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTV 170 (357)
T ss_dssp EECTTSCSSC--SEEECCCSS-CEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEE
T ss_pred EEeCCCCCcc--EEEEEeccc-ceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEE
Confidence 99999886 3 233555554 788885 57899999999999999999999886 666665 33 378999
Q ss_pred E----EecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECC---CCCEEEEEeCCCcEEEEeCCcccCCc
Q 043172 399 A----FADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSP---DGTFFAAGSDSGIVNVYNRQEFLGGK 471 (564)
Q Consensus 399 ~----~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp---~g~~lasgs~dg~V~iwd~~~~~~~~ 471 (564)
+ |+|++++|++++.+|.|++||+++++..... .+...+.+++|+| ++.+|++|+.+|.|++||++..
T Consensus 171 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---- 244 (357)
T 3i2n_A 171 AFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWET--NIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQ---- 244 (357)
T ss_dssp EEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEE--ECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEE----
T ss_pred EEEeccCCCCCEEEEEccCCeEEEEECccCceeeec--CCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCC----
Confidence 8 6789999999999999999999998875543 3344789999999 8999999999999999999876
Q ss_pred ceeeEEc-----cccccceeEEEEcCCCc-EEEEEecCCCCeEEEEEcCCCceec----------------cCCCCCCCC
Q 043172 472 RKPIKTI-----ENLTTKVDFMKFNNDAQ-ILAICSTMKKNSLKLIHIPSYNVFS----------------NWPPANRNL 529 (564)
Q Consensus 472 ~~~~~~~-----~~~~~~I~~l~fspdg~-~La~~s~~~d~~I~lwdl~s~~~~~----------------~~~~~~~~~ 529 (564)
.++..+ ..|...|++++|+|+++ +|++++. |+.|++|++.++.... .+.....|.
T Consensus 245 -~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 321 (357)
T 3i2n_A 245 -HPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGG--AGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLST 321 (357)
T ss_dssp -ETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEET--TSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCS
T ss_pred -CcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeC--CCcEEEeecCCCcccccccCCCCccccccccceeeccccCC
Confidence 444333 48999999999999998 8889988 9999999998654321 111223466
Q ss_pred CCcEEEEEeCCCCEEE-EEcCCCeEEEEEcCCCC
Q 043172 530 QYPRCLDFSPGGGFMA-VGNAAGKVFLYKLNHYH 562 (564)
Q Consensus 530 ~~V~~l~fspdg~~La-sgs~dG~V~lw~l~~~~ 562 (564)
..|++++|+|++++|+ +|+.||.|+||++...+
T Consensus 322 ~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 322 QPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp SCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred CCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 8899999999999998 79999999999998765
No 35
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.3e-36 Score=305.04 Aligned_cols=253 Identities=13% Similarity=0.149 Sum_probs=220.9
Q ss_pred ceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEE
Q 043172 297 TKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYIL 376 (564)
Q Consensus 297 ~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~ 376 (564)
.....+.+|...|.+++|+|++++|++++.|+.|++||+.++.... .+..|.. +|.+++|+|++++|++++.|+.|+
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~--~~~~~~~-~v~~~~~~~~~~~l~s~s~d~~i~ 80 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR--SIQVTET-PVRAGKFIARKNWIIVGSDDFRIR 80 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE--EEECCSS-CEEEEEEEGGGTEEEEEETTSEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeE--EeeccCC-cEEEEEEeCCCCEEEEECCCCEEE
Confidence 3456788999999999999999999999999999999999987643 3555554 799999999999999999999999
Q ss_pred EEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECC-CCCEEEEEe
Q 043172 377 LVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSP-DGTFFAAGS 454 (564)
Q Consensus 377 lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp-~g~~lasgs 454 (564)
+||+.+++.+..+. |...|++++|+|++++|++|+.|++|++||++++..+......+...|.+++|+| ++.+|++|+
T Consensus 81 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs 160 (304)
T 2ynn_A 81 VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC 160 (304)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEE
T ss_pred EEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEe
Confidence 99999999999888 8999999999999999999999999999999987555444445556799999999 578999999
Q ss_pred CCCcEEEEeCCcccCCcceeeEEc-cccccceeEEEEcC--CCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCC
Q 043172 455 DSGIVNVYNRQEFLGGKRKPIKTI-ENLTTKVDFMKFNN--DAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQY 531 (564)
Q Consensus 455 ~dg~V~iwd~~~~~~~~~~~~~~~-~~~~~~I~~l~fsp--dg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~ 531 (564)
.||+|+|||+... .+...+ ..+...+..+.|+| ++.+|++++. |+.|+|||+.++..+..+. +|...
T Consensus 161 ~D~~v~iwd~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~--D~~i~iWd~~~~~~~~~~~---~h~~~ 230 (304)
T 2ynn_A 161 LDRTVKVWSLGQS-----TPNFTLTTGQERGVNYVDYYPLPDKPYMITASD--DLTIKIWDYQTKSCVATLE---GHMSN 230 (304)
T ss_dssp TTSEEEEEETTCS-----SCSEEEECCCTTCEEEEEECCSTTCCEEEEEET--TSEEEEEETTTTEEEEEEE---CCSSC
T ss_pred CCCeEEEEECCCC-----CccceeccCCcCcEEEEEEEEcCCCCEEEEEcC--CCeEEEEeCCCCccceeeC---CCCCC
Confidence 9999999999875 444444 45667899999987 7889999999 9999999999998877554 45688
Q ss_pred cEEEEEeCCCCEEEEEcCCCeEEEEEcCCCC
Q 043172 532 PRCLDFSPGGGFMAVGNAAGKVFLYKLNHYH 562 (564)
Q Consensus 532 V~~l~fspdg~~Lasgs~dG~V~lw~l~~~~ 562 (564)
|++++|+|++.+|++|+.||.|+||++.+++
T Consensus 231 v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~ 261 (304)
T 2ynn_A 231 VSFAVFHPTLPIIISGSEDGTLKIWNSSTYK 261 (304)
T ss_dssp EEEEEECSSSSEEEEEETTSCEEEEETTTCC
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 9999999999999999999999999998764
No 36
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-38 Score=327.82 Aligned_cols=291 Identities=14% Similarity=0.132 Sum_probs=226.5
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCc-
Q 043172 261 STGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAK- 339 (564)
Q Consensus 261 h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~- 339 (564)
|.++|++++|+|++++|++|+.|+.|+||++.......+..+.+|..+|.+++|+|++++|++++.|+.|++||+.++.
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~ 89 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGT 89 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------C
T ss_pred CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCc
Confidence 6789999999999999999999999999999854325667788899999999999999999999999999999999887
Q ss_pred eeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE---EEEee--ecCcEEEEEEecCCCEEEEEeCCC
Q 043172 340 ADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKEL---IGTLK--MNGTVRSLAFADDGKQLLSSGGDG 414 (564)
Q Consensus 340 ~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~---~~~~~--~~~~V~~l~~spdg~~l~s~s~dg 414 (564)
......+.+|.. .|.+++|+|++++|++++.++.|++||+.+++. ...+. |...|++++|+|++++|++++.|+
T Consensus 90 ~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~ 168 (377)
T 3dwl_C 90 WKQTLVLLRLNR-AATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADR 168 (377)
T ss_dssp CCCEEECCCCSS-CEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSS
T ss_pred eeeeeEecccCC-ceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCC
Confidence 323334555554 799999999999999999999999999998873 55555 789999999999999999999999
Q ss_pred eEEEEECCC------------------CceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeE
Q 043172 415 QVYHWDLRT------------------RTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIK 476 (564)
Q Consensus 415 ~V~lwD~~~------------------~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~ 476 (564)
.|++||+.. +.++..+ .+...+++++|+|++++|++|+.||.|+|||+.... ..+..+.
T Consensus 169 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~ 245 (377)
T 3dwl_C 169 KAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY--PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPE-QPPRALI 245 (377)
T ss_dssp CEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC--CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTT-SCEEECC
T ss_pred EEEEEEEEecccCCCccccccccccchhhhhhcc--cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCC-CcceeeE
Confidence 999999952 3444444 455579999999999999999999999999998861 0011277
Q ss_pred EccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCc--eeccC--------------------------------
Q 043172 477 TIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYN--VFSNW-------------------------------- 522 (564)
Q Consensus 477 ~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~--~~~~~-------------------------------- 522 (564)
.+..|..+|.+++|+|++++|++++. ++ +.+|+..... ....+
T Consensus 246 ~~~~~~~~v~~~~~s~~~~~l~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (377)
T 3dwl_C 246 TVKLSQLPLRSLLWANESAIVAAGYN--YS-PILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRS 322 (377)
T ss_dssp CEECSSSCEEEEEEEETTEEEEEESS--SS-EEEECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-----------
T ss_pred eecCCCCceEEEEEcCCCCEEEEEcC--Cc-EEEEEeCCCceEEEeeecccccccccccccccccccccccccccccccc
Confidence 88899999999999999999998875 44 4477664211 00000
Q ss_pred ---------------CCCCCCCCCcEEEEEeCCC-C---EEEEEcCCCeEEEEEc
Q 043172 523 ---------------PPANRNLQYPRCLDFSPGG-G---FMAVGNAAGKVFLYKL 558 (564)
Q Consensus 523 ---------------~~~~~~~~~V~~l~fspdg-~---~Lasgs~dG~V~lw~l 558 (564)
.....|.+.|+++++.+.. . .|++|+.||.|+||++
T Consensus 323 ~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 323 TFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp --------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0111277889999976643 3 6999999999999986
No 37
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.3e-37 Score=318.30 Aligned_cols=297 Identities=12% Similarity=0.125 Sum_probs=244.2
Q ss_pred eeeeeeecccCCCCCCCCeeEEEEcCCCC-EEEEEeCCCcEEEEEe----cCCCC----ceeEEEEe----------CCc
Q 043172 247 LEYSRLIDANADESSTGPINSVQFHRNAQ-LLLVAGLDRRLRFFQI----DGKRN----TKIQSIFL----------EDC 307 (564)
Q Consensus 247 ~d~~rl~~~~~~~~h~~~V~~l~fspdg~-~l~s~s~dg~I~lwd~----~~~~~----~~~~~~~~----------~~~ 307 (564)
|+............|.++|++++|+|+++ +|++|+.|+.|++|++ ..... .....+.. |..
T Consensus 30 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (425)
T 1r5m_A 30 DDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTN 109 (425)
T ss_dssp ----CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CB
T ss_pred ccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCC
Confidence 34333333333445779999999999999 9999999999999999 64331 02333333 577
Q ss_pred CeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE
Q 043172 308 PVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIG 387 (564)
Q Consensus 308 ~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~ 387 (564)
+|.+++|+|++++|++++.++.|++|+. ++... ..+.+|.. .|.+++|+|++++|++++.+|.|++||+.+++.+.
T Consensus 110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~~-~~~~~--~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 185 (425)
T 1r5m_A 110 QVTCLAWSHDGNSIVTGVENGELRLWNK-TGALL--NVLNFHRA-PIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQ 185 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEET-TSCEE--EEECCCCS-CEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEE
T ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEeC-CCCee--eeccCCCc-cEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEE
Confidence 9999999999999999999999999994 44432 23455554 79999999999999999999999999999999988
Q ss_pred Eee-ecCc---------------EEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEE
Q 043172 388 TLK-MNGT---------------VRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFA 451 (564)
Q Consensus 388 ~~~-~~~~---------------V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~la 451 (564)
.+. +... +.+++|+|++ .+++++.+|.|++||+.+++.+..+..+ ...+.+++|+|++++|+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~ 263 (425)
T 1r5m_A 186 HFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGH-HGPISVLEFNDTNKLLL 263 (425)
T ss_dssp EECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCC-SSCEEEEEEETTTTEEE
T ss_pred EeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccC-CCceEEEEECCCCCEEE
Confidence 887 4444 8999999975 5888999999999999998888777644 44789999999999999
Q ss_pred EEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCC
Q 043172 452 AGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQY 531 (564)
Q Consensus 452 sgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~ 531 (564)
+++.+|.|++||+... +++..+..|...|.+++|+|++ +|++++. ++.|++|++.++.....+.. |...
T Consensus 264 ~~~~d~~i~i~d~~~~-----~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~--d~~i~i~d~~~~~~~~~~~~---~~~~ 332 (425)
T 1r5m_A 264 SASDDGTLRIWHGGNG-----NSQNCFYGHSQSIVSASWVGDD-KVISCSM--DGSVRLWSLKQNTLLALSIV---DGVP 332 (425)
T ss_dssp EEETTSCEEEECSSSB-----SCSEEECCCSSCEEEEEEETTT-EEEEEET--TSEEEEEETTTTEEEEEEEC---TTCC
T ss_pred EEcCCCEEEEEECCCC-----ccceEecCCCccEEEEEECCCC-EEEEEeC--CCcEEEEECCCCcEeEeccc---CCcc
Confidence 9999999999999987 7888888899999999999999 8888888 99999999999888775543 4478
Q ss_pred cEEEEEeCCCCEEEEEcCCCeEEEEEcCC
Q 043172 532 PRCLDFSPGGGFMAVGNAAGKVFLYKLNH 560 (564)
Q Consensus 532 V~~l~fspdg~~Lasgs~dG~V~lw~l~~ 560 (564)
|++++|+|++.+|++++.+|.|++|++..
T Consensus 333 i~~~~~s~~~~~l~~~~~dg~i~i~~~~~ 361 (425)
T 1r5m_A 333 IFAGRISQDGQKYAVAFMDGQVNVYDLKK 361 (425)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEECHH
T ss_pred EEEEEEcCCCCEEEEEECCCeEEEEECCC
Confidence 99999999999999999999999999864
No 38
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=3.6e-36 Score=307.60 Aligned_cols=278 Identities=17% Similarity=0.183 Sum_probs=220.6
Q ss_pred cccCCCeEEcCCCccCCCeeeee-eeecccC----------CCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCC
Q 043172 228 LRTDEDLVVKSSAKLSPGLLEYS-RLIDANA----------DESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRN 296 (564)
Q Consensus 228 l~~~~~~~~~~~~~l~~~~~d~~-rl~~~~~----------~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~ 296 (564)
+...+.+++.++ ......|+.. .++.... ...|..+|++++|+|++ .|++|+.||+|+|||+.....
T Consensus 38 fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~ 115 (344)
T 4gqb_B 38 YRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAVELWELDENET 115 (344)
T ss_dssp ECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSS
T ss_pred ECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCc
Confidence 455666666543 3445566643 2221111 11256789999999985 678999999999999986543
Q ss_pred cee--EEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCC-CEEEEEeCCC
Q 043172 297 TKI--QSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDS-SVIAFVGNEG 373 (564)
Q Consensus 297 ~~~--~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg-~~la~~~~dg 373 (564)
... ....+|...|++++|+|+|++|++++.|+.|++||+.+++... .+.+|.. .|.+++|+|++ .+|++++.|+
T Consensus 116 ~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~--~~~~h~~-~V~~~~~~~~~~~~l~s~s~D~ 192 (344)
T 4gqb_B 116 LIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLS--SYRAHAA-QVTCVAASPHKDSVFLSCSEDN 192 (344)
T ss_dssp CEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE--EECCCSS-CEEEEEECSSCTTEEEEEETTS
T ss_pred eeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEE--EEcCcCC-ceEEEEecCCCCCceeeecccc
Confidence 332 2345799999999999999999999999999999999998744 4667665 79999999987 4789999999
Q ss_pred eEEEEECCCCcEEEEee---ecCcEEEEEEecC-CCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCC-C
Q 043172 374 YILLVSSKTKELIGTLK---MNGTVRSLAFADD-GKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDG-T 448 (564)
Q Consensus 374 ~I~lwd~~t~~~~~~~~---~~~~V~~l~~spd-g~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g-~ 448 (564)
.|++||+++++.+..+. +...+.+++|+|+ +++|++|+.||.|++||+++++++..+..+. ..|++++|+|++ +
T Consensus 193 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~-~~v~~v~fsp~g~~ 271 (344)
T 4gqb_B 193 RILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHS-QCVTGLVFSPHSVP 271 (344)
T ss_dssp CEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCS-SCEEEEEECSSSSC
T ss_pred ccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCC-CCEEEEEEccCCCe
Confidence 99999999999888875 4567999999994 5788999999999999999999998887554 479999999998 5
Q ss_pred EEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCc-EEEEEecCCCCeEEEEEcCCCcee
Q 043172 449 FFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQ-ILAICSTMKKNSLKLIHIPSYNVF 519 (564)
Q Consensus 449 ~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~-~La~~s~~~d~~I~lwdl~s~~~~ 519 (564)
+||+|+.||+|+|||+..+ + +..+.+|...|++|+|+|+++ +|++++. |++|++|++++....
T Consensus 272 ~lasgs~D~~i~vwd~~~~-----~-~~~~~~H~~~V~~v~~sp~~~~llas~s~--D~~v~~w~v~~~~~~ 335 (344)
T 4gqb_B 272 FLASLSEDCSLAVLDSSLS-----E-LFRSQAHRDFVRDATWSPLNHSLLTTVGW--DHQVVHHVVPTEPLP 335 (344)
T ss_dssp CEEEEETTSCEEEECTTCC-----E-EEEECCCSSCEEEEEECSSSTTEEEEEET--TSCEEEEECCC----
T ss_pred EEEEEeCCCeEEEEECCCC-----c-EEEEcCCCCCEEEEEEeCCCCeEEEEEcC--CCeEEEEECCCCCCC
Confidence 8999999999999999875 4 456788999999999999986 5667887 999999999876543
No 39
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.8e-37 Score=322.33 Aligned_cols=290 Identities=11% Similarity=0.138 Sum_probs=237.8
Q ss_pred CCCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEEecC---CC-CceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEE
Q 043172 259 ESSTGPINSVQFHR-NAQLLLVAGLDRRLRFFQIDG---KR-NTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSL 333 (564)
Q Consensus 259 ~~h~~~V~~l~fsp-dg~~l~s~s~dg~I~lwd~~~---~~-~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iw 333 (564)
.+|.++|++++|+| ++++|++|+.||+|+||++.. .. ......+ .|..+|.+++|+|++++|++++.|+.|++|
T Consensus 60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw 138 (437)
T 3gre_A 60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVL 138 (437)
T ss_dssp TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEE
Confidence 67999999999999 999999999999999999975 32 1123333 489999999999999999999999999999
Q ss_pred ECC---CCceeeec------ccccc---CCcceEEEE--EcCCCCEEEEEeCCCeEEEEECCCCcEEEEee---ecCcEE
Q 043172 334 DLV---KAKADKIG------PLVGR---EEKSLEFFE--VSPDSSVIAFVGNEGYILLVSSKTKELIGTLK---MNGTVR 396 (564)
Q Consensus 334 dl~---~~~~~~~~------~~~~~---~~~~v~~~~--~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~---~~~~V~ 396 (564)
|+. +++..... .+..+ ....+.++. +++++.+|++++.+|.|++||+++++.+..+. |.+.|+
T Consensus 139 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~ 218 (437)
T 3gre_A 139 KVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVS 218 (437)
T ss_dssp EEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEE
T ss_pred EeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceE
Confidence 994 44432211 11100 223466666 66889999999999999999999999998887 678999
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECC----CCCEEEEEeCCCcEEEEeCCcccCCcc
Q 043172 397 SLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSP----DGTFFAAGSDSGIVNVYNRQEFLGGKR 472 (564)
Q Consensus 397 ~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp----~g~~lasgs~dg~V~iwd~~~~~~~~~ 472 (564)
+++|+|++++|++++.||.|++||+++++++..+...+...|++++|+| ++.+|++|+.||.|+|||+.++
T Consensus 219 ~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~----- 293 (437)
T 3gre_A 219 SICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKG----- 293 (437)
T ss_dssp EEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTT-----
T ss_pred EEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCC-----
Confidence 9999999999999999999999999999998888755556899996664 5779999999999999999876
Q ss_pred eeeEEccc--------------------------cccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCC-
Q 043172 473 KPIKTIEN--------------------------LTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPA- 525 (564)
Q Consensus 473 ~~~~~~~~--------------------------~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~- 525 (564)
+.+..+.+ |...|++++|+ ++++|++++. |+.|++|++.+++....+..+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~--d~~i~~wd~~~~~~~~~~~~~~ 370 (437)
T 3gre_A 294 HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEA--TSSIVMFSLNELSSSKAVISPS 370 (437)
T ss_dssp EEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGG--GTEEEEEETTCGGGCEEEECC-
T ss_pred cEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCC--CCeEEEEECCCcccceEEeccc
Confidence 44444332 66779999999 7899999998 999999999988765544331
Q ss_pred ---------------------------------CCCCCCcEEEEEeCC--CCEEEEEcCCCeEEEEE
Q 043172 526 ---------------------------------NRNLQYPRCLDFSPG--GGFMAVGNAAGKVFLYK 557 (564)
Q Consensus 526 ---------------------------------~~~~~~V~~l~fspd--g~~Lasgs~dG~V~lw~ 557 (564)
..|...|++++|+++ +.+|++|+.||.|+||+
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 371 RFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp -CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 126788999999998 78999999999999995
No 40
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2.3e-37 Score=319.16 Aligned_cols=289 Identities=16% Similarity=0.191 Sum_probs=226.2
Q ss_pred CCeeEEEEcCCCCEEEEEeCCC-------cEEEEEecCCCCce------e--EEEEeCCcCeEEEEEeeCCCEEEEEe--
Q 043172 263 GPINSVQFHRNAQLLLVAGLDR-------RLRFFQIDGKRNTK------I--QSIFLEDCPVRKASFLPDGSQAIIAG-- 325 (564)
Q Consensus 263 ~~V~~l~fspdg~~l~s~s~dg-------~I~lwd~~~~~~~~------~--~~~~~~~~~I~~l~fspdg~~l~s~~-- 325 (564)
-||+|++|+|++++|++||.+. .|+||+++...... . ..+..|...|.++++ +++.+++++
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~--~~~~~~~g~~~ 92 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDA--SKGIILVGCNE 92 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEE--ETTEEEEECCC
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEe--CCCEEEEEECC
Confidence 5899999999999999997543 59999997554321 1 123456667777765 466777663
Q ss_pred ---------CCCeEEEEECCCCce--eeec--ccc--ccCCcceEEEEEcCCCCEEEEEe--CCCeEEEEECCCCcEEEE
Q 043172 326 ---------RRKFFYSLDLVKAKA--DKIG--PLV--GREEKSLEFFEVSPDSSVIAFVG--NEGYILLVSSKTKELIGT 388 (564)
Q Consensus 326 ---------~dg~i~iwdl~~~~~--~~~~--~~~--~~~~~~v~~~~~spdg~~la~~~--~dg~I~lwd~~t~~~~~~ 388 (564)
.++.+++|++.+... .... .+. ......+.+++|||||+++++++ .|+.|+|||+.+++.+..
T Consensus 93 ~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~ 172 (365)
T 4h5i_A 93 NSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFE 172 (365)
T ss_dssp CHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEE
T ss_pred CccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEE
Confidence 467899999876432 1111 111 11123588999999999987655 689999999999999999
Q ss_pred eeecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEe-ecCCcceEEEEECCCCCEEEEEeCCC----cEEEEe
Q 043172 389 LKMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAV-DEGCINGTALCTSPDGTFFAAGSDSG----IVNVYN 463 (564)
Q Consensus 389 ~~~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~-~~~~~~i~~l~~sp~g~~lasgs~dg----~V~iwd 463 (564)
+.|.+.|.+++|+|+|++|++++. +.+.+|+..++..+.... ..+...+.+++|+|+++++++++.++ .+.+|+
T Consensus 173 ~~~~~~V~~v~fspdg~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~ 251 (365)
T 4h5i_A 173 IETRGEVKDLHFSTDGKVVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKIS 251 (365)
T ss_dssp EECSSCCCEEEECTTSSEEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEE
T ss_pred eCCCCceEEEEEccCCceEEeccc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecc
Confidence 999999999999999999999885 457777777777665433 34566789999999999999999887 688888
Q ss_pred CCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCE
Q 043172 464 RQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGF 543 (564)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~ 543 (564)
+.... ........+.+|..+|++++|+|+|++||+|+. |++|+|||+.+++++..+ ..+|...|++++|||||++
T Consensus 252 ~~~~~-~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~--D~~V~iwd~~~~~~~~~~--~~gH~~~V~~v~fSpdg~~ 326 (365)
T 4h5i_A 252 IKSGN-TSVLRSKQVTNRFKGITSMDVDMKGELAVLASN--DNSIALVKLKDLSMSKIF--KQAHSFAITEVTISPDSTY 326 (365)
T ss_dssp EETTE-EEEEEEEEEESSCSCEEEEEECTTSCEEEEEET--TSCEEEEETTTTEEEEEE--TTSSSSCEEEEEECTTSCE
T ss_pred cccce-ecceeeeeecCCCCCeEeEEECCCCCceEEEcC--CCEEEEEECCCCcEEEEe--cCcccCCEEEEEECCCCCE
Confidence 76540 111234567789999999999999999999999 999999999999887754 2456789999999999999
Q ss_pred EEEEcCCCeEEEEEcC
Q 043172 544 MAVGNAAGKVFLYKLN 559 (564)
Q Consensus 544 Lasgs~dG~V~lw~l~ 559 (564)
||+|+.|++|+||++.
T Consensus 327 laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 327 VASVSAANTIHIIKLP 342 (365)
T ss_dssp EEEEETTSEEEEEECC
T ss_pred EEEEeCCCeEEEEEcC
Confidence 9999999999999995
No 41
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.2e-36 Score=308.02 Aligned_cols=291 Identities=13% Similarity=0.179 Sum_probs=230.1
Q ss_pred cccCCCeEEcCCCccCCCeeeeeee---ecccCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEe
Q 043172 228 LRTDEDLVVKSSAKLSPGLLEYSRL---IDANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFL 304 (564)
Q Consensus 228 l~~~~~~~~~~~~~l~~~~~d~~rl---~~~~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~ 304 (564)
+...+.++++++.+-...+|+...- .......+|...|++++|+|++++|++|+.|++|+||++.......+..+.+
T Consensus 24 ~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~ 103 (345)
T 3fm0_A 24 WNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEG 103 (345)
T ss_dssp ECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECC
T ss_pred ECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccC
Confidence 4556666766666666667776521 1122346899999999999999999999999999999998665567788889
Q ss_pred CCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceee-eccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 043172 305 EDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADK-IGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTK 383 (564)
Q Consensus 305 ~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~-~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~ 383 (564)
|..+|.+++|+|++++|++++.|+.|++||+.++.... +..+.+|.. .|.+++|+|++.+|++++.|+.|++|++.++
T Consensus 104 h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~-~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~ 182 (345)
T 3fm0_A 104 HENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQ-DVKHVVWHPSQELLASASYDDTVKLYREEED 182 (345)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCS-CEEEEEECSSSSCEEEEETTSCEEEEEEETT
T ss_pred CCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCC-CeEEEEECCCCCEEEEEeCCCcEEEEEecCC
Confidence 99999999999999999999999999999998764322 333455554 7999999999999999999999999999887
Q ss_pred cEE--EEee-ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCC---------------ceeEEEeecCCcceEEEEECC
Q 043172 384 ELI--GTLK-MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTR---------------TCIHRAVDEGCINGTALCTSP 445 (564)
Q Consensus 384 ~~~--~~~~-~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~---------------~~~~~~~~~~~~~i~~l~~sp 445 (564)
... ..+. |...|++++|+|++++|++++.|++|++|+.... .++..+...+...|.+++|+|
T Consensus 183 ~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~ 262 (345)
T 3fm0_A 183 DWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQ 262 (345)
T ss_dssp EEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECT
T ss_pred CEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEec
Confidence 644 4454 8899999999999999999999999999997432 234444444666799999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCcccCCc-c---eeeEEccccccceeEEEEcCCC-cEEEEEecCCCCeEEEEEcCCCceec
Q 043172 446 DGTFFAAGSDSGIVNVYNRQEFLGGK-R---KPIKTIENLTTKVDFMKFNNDA-QILAICSTMKKNSLKLIHIPSYNVFS 520 (564)
Q Consensus 446 ~g~~lasgs~dg~V~iwd~~~~~~~~-~---~~~~~~~~~~~~I~~l~fspdg-~~La~~s~~~d~~I~lwdl~s~~~~~ 520 (564)
++.+|++++.|+.|++|+........ + .......+|...|++|+|+|++ .+||+|+. |+.|+||++.+.+.+.
T Consensus 263 ~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~--Dg~v~~W~~~~~~~~~ 340 (345)
T 3fm0_A 263 LTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSD--DGEVAFWKYQRPEGLH 340 (345)
T ss_dssp TTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEET--TSCEEEEEECC-----
T ss_pred CCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCC--CCcEEEEEecCCCCcc
Confidence 99999999999999999987541110 0 1223346899999999999998 58999998 9999999998877654
Q ss_pred c
Q 043172 521 N 521 (564)
Q Consensus 521 ~ 521 (564)
.
T Consensus 341 ~ 341 (345)
T 3fm0_A 341 H 341 (345)
T ss_dssp -
T ss_pred c
Confidence 3
No 42
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3.6e-36 Score=314.55 Aligned_cols=319 Identities=12% Similarity=0.087 Sum_probs=253.1
Q ss_pred ccCCCeEEcCCCccCCCeeeeeeeecccCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcC
Q 043172 229 RTDEDLVVKSSAKLSPGLLEYSRLIDANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCP 308 (564)
Q Consensus 229 ~~~~~~~~~~~~~l~~~~~d~~rl~~~~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~ 308 (564)
...+.+++.++..-...+|+............| ..+....|+|++.+|++|+.|+.|+||++.. ......+..|..+
T Consensus 65 s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~h~~~ 141 (420)
T 3vl1_A 65 EKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNF--NLQREIDQAHVSE 141 (420)
T ss_dssp EEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTS--CEEEEETTSSSSC
T ss_pred eecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCC--cceeeecccccCc
Confidence 334444444434444456666544444445555 4556668899999999999999999999873 3455556789999
Q ss_pred eEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE
Q 043172 309 VRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGT 388 (564)
Q Consensus 309 I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~ 388 (564)
|.+++|+|++++|++++.|+.|++||+.+++... .+.+|.. .|.+++|+|++++|++++.||.|++||+.+++.+..
T Consensus 142 v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~--~~~~h~~-~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~ 218 (420)
T 3vl1_A 142 ITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPR--TLIGHRA-TVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHT 218 (420)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTCCCCE--EEECCSS-CEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEE
T ss_pred cEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCce--EEcCCCC-cEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEE
Confidence 9999999999999999999999999999887643 3555554 799999999999999999999999999999999888
Q ss_pred ee----ecCcEEEEE---------------------EecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEE
Q 043172 389 LK----MNGTVRSLA---------------------FADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCT 443 (564)
Q Consensus 389 ~~----~~~~V~~l~---------------------~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~ 443 (564)
+. +...|.+++ |+|++++|++++.||.|++||+++++.+..+...+...+++++|
T Consensus 219 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~ 298 (420)
T 3vl1_A 219 FNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTV 298 (420)
T ss_dssp ECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEE
T ss_pred eecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEE
Confidence 86 334555555 46789999999999999999999999888887766678999999
Q ss_pred CCCCC-EEEEEeCCCcEEEEeCCcccCCcceeeEEccc-cccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceecc
Q 043172 444 SPDGT-FFAAGSDSGIVNVYNRQEFLGGKRKPIKTIEN-LTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSN 521 (564)
Q Consensus 444 sp~g~-~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~-~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~ 521 (564)
+|++. +|++|+.||.|++||++.. ..++..+.. |...|+++. ++++++|++++. |+.|++|++........
T Consensus 299 ~~~~~~~l~~g~~dg~i~vwd~~~~----~~~~~~~~~~~~~~v~~~~-~~~~~~l~s~~~--d~~v~iw~~~~~~~~~~ 371 (420)
T 3vl1_A 299 DGNNANYIYAGYENGMLAQWDLRSP----ECPVGEFLINEGTPINNVY-FAAGALFVSSGF--DTSIKLDIISDPESERP 371 (420)
T ss_dssp CSSCTTEEEEEETTSEEEEEETTCT----TSCSEEEEESTTSCEEEEE-EETTEEEEEETT--TEEEEEEEECCTTCCSC
T ss_pred eCCCCCEEEEEeCCCeEEEEEcCCC----cCchhhhhccCCCCceEEE-eCCCCEEEEecC--CccEEEEeccCCCCCcc
Confidence 99999 9999999999999999875 144666665 567777775 567889999988 99999999976422211
Q ss_pred ---CC---CCCCCCCCcEEEEEeCCCC---EEEEEcCCCeEEEEEcCC
Q 043172 522 ---WP---PANRNLQYPRCLDFSPGGG---FMAVGNAAGKVFLYKLNH 560 (564)
Q Consensus 522 ---~~---~~~~~~~~V~~l~fspdg~---~Lasgs~dG~V~lw~l~~ 560 (564)
.. ....+.+.|.+++|+|++. .|++++.+|.+.+|++..
T Consensus 372 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 372 AIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp EECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred ceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 11 1234567899999999999 677777899999999864
No 43
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=4.9e-36 Score=307.81 Aligned_cols=273 Identities=14% Similarity=0.177 Sum_probs=231.3
Q ss_pred cCCCeEEcCCCccCCCeeeeeeeecccCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCC----CceeEEEEeC
Q 043172 230 TDEDLVVKSSAKLSPGLLEYSRLIDANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKR----NTKIQSIFLE 305 (564)
Q Consensus 230 ~~~~~~~~~~~~l~~~~~d~~rl~~~~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~----~~~~~~~~~~ 305 (564)
..+.++++++.+-...+|+............|...|.+++|+|++.+|++|+.|+.+++|++.... ......+..|
T Consensus 74 ~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h 153 (354)
T 2pbi_B 74 KDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMH 153 (354)
T ss_dssp TTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEEC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeecc
Confidence 344455555445445555543222223334588899999999999999999999999999986431 2356677889
Q ss_pred CcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcC--CCCEEEEEeCCCeEEEEECCCC
Q 043172 306 DCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSP--DSSVIAFVGNEGYILLVSSKTK 383 (564)
Q Consensus 306 ~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~sp--dg~~la~~~~dg~I~lwd~~t~ 383 (564)
...|.+++|+|++..|++++.|++|++||+.+++... .+.+|.. .|.+++|+| ++++|++++.||.|++||++++
T Consensus 154 ~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~--~~~~h~~-~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~ 230 (354)
T 2pbi_B 154 TNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQ--SFHGHGA-DVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG 230 (354)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE--EEECCSS-CEEEEEECCCSSCCEEEEEETTSCEEEEETTTC
T ss_pred CCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEE--EEcCCCC-CeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCC
Confidence 9999999999999999999999999999999998643 4566655 799999987 5789999999999999999999
Q ss_pred cEEEEee-ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecC-CcceEEEEECCCCCEEEEEeCCCcEEE
Q 043172 384 ELIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEG-CINGTALCTSPDGTFFAAGSDSGIVNV 461 (564)
Q Consensus 384 ~~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~-~~~i~~l~~sp~g~~lasgs~dg~V~i 461 (564)
+++..+. |...|++++|+|++.+|++++.|++|++||++.+..+..+..+. ...+++++|+|++++|++|+.||.|+|
T Consensus 231 ~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~v 310 (354)
T 2pbi_B 231 QCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINV 310 (354)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred cEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEE
Confidence 9998887 88999999999999999999999999999999988776665432 346789999999999999999999999
Q ss_pred EeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEE
Q 043172 462 YNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIH 512 (564)
Q Consensus 462 wd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwd 512 (564)
||+..+ .++..+.+|...|++++|+|+|++|++|+. |+.|+||+
T Consensus 311 wd~~~~-----~~~~~l~~h~~~v~~l~~spdg~~l~sgs~--D~~v~vW~ 354 (354)
T 2pbi_B 311 WDVLKG-----SRVSILFGHENRVSTLRVSPDGTAFCSGSW--DHTLRVWA 354 (354)
T ss_dssp EETTTC-----SEEEEECCCSSCEEEEEECTTSSCEEEEET--TSEEEEEC
T ss_pred EECCCC-----ceEEEEECCCCcEEEEEECCCCCEEEEEcC--CCCEEecC
Confidence 999887 788889999999999999999999999999 99999995
No 44
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-37 Score=322.04 Aligned_cols=289 Identities=15% Similarity=0.192 Sum_probs=245.2
Q ss_pred CCeeEEEEcCCCC-EEEEE----------eCCCcEEEEEecCCCCc-eeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeE
Q 043172 263 GPINSVQFHRNAQ-LLLVA----------GLDRRLRFFQIDGKRNT-KIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFF 330 (564)
Q Consensus 263 ~~V~~l~fspdg~-~l~s~----------s~dg~I~lwd~~~~~~~-~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i 330 (564)
..|++++|+|+++ +|++| +.|+.|+||++...... .+.. ..|...|.+++|+|++++|++++.++.|
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~v 91 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIAS-LQVDSKFNDLDWSHNNKIIAGALDNGSL 91 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCC-CCCSSCEEEEEECSSSSCEEEEESSSCE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEE-EecCCceEEEEECCCCCeEEEEccCCeE
Confidence 4789999999987 99999 88999999999754322 2322 3478899999999999999999999999
Q ss_pred EEEECCCC--ceeeeccccccCCcceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCc------EEEEe----eecCcEEE
Q 043172 331 YSLDLVKA--KADKIGPLVGREEKSLEFFEVSPD-SSVIAFVGNEGYILLVSSKTKE------LIGTL----KMNGTVRS 397 (564)
Q Consensus 331 ~iwdl~~~--~~~~~~~~~~~~~~~v~~~~~spd-g~~la~~~~dg~I~lwd~~t~~------~~~~~----~~~~~V~~ 397 (564)
++|++.+. ....+..+.+|.. .|.+++|+|+ +++|++++.+|.|++||+.+++ ....+ .|...|.+
T Consensus 92 ~vw~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 170 (416)
T 2pm9_A 92 ELYSTNEANNAINSMARFSNHSS-SVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVIS 170 (416)
T ss_dssp EEECCSSTTSCCCEEEECCCSSS-CCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCE
T ss_pred EEeecccccccccchhhccCCcc-ceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeE
Confidence 99999872 1112334556655 7999999998 8999999999999999999886 33332 27889999
Q ss_pred EEEecC-CCEEEEEeCCCeEEEEECCCCceeEEEeecC-----CcceEEEEECCCC-CEEEEEeCCC---cEEEEeCCcc
Q 043172 398 LAFADD-GKQLLSSGGDGQVYHWDLRTRTCIHRAVDEG-----CINGTALCTSPDG-TFFAAGSDSG---IVNVYNRQEF 467 (564)
Q Consensus 398 l~~spd-g~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~-----~~~i~~l~~sp~g-~~lasgs~dg---~V~iwd~~~~ 467 (564)
++|+|+ +.+|++++.||.|++||+++++++..+..+. ...+.+++|+|++ .+|++++.++ .|++||++..
T Consensus 171 ~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~ 250 (416)
T 2pm9_A 171 LAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNA 250 (416)
T ss_dssp EEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTST
T ss_pred EEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCC
Confidence 999998 7899999999999999999999888877653 5679999999997 6999999998 9999999874
Q ss_pred cCCcceeeEEcc-ccccceeEEEEcC-CCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCC-CEE
Q 043172 468 LGGKRKPIKTIE-NLTTKVDFMKFNN-DAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGG-GFM 544 (564)
Q Consensus 468 ~~~~~~~~~~~~-~~~~~I~~l~fsp-dg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg-~~L 544 (564)
..++..+. +|...|++++|+| ++++|++++. |+.|++|++.+++.+..+.. |...|++++|+|++ .+|
T Consensus 251 ----~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~--dg~v~~wd~~~~~~~~~~~~---~~~~v~~~~~s~~~~~~l 321 (416)
T 2pm9_A 251 ----NTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGR--DNTVLLWNPESAEQLSQFPA---RGNWCFKTKFAPEAPDLF 321 (416)
T ss_dssp ----TSCSBCCCSCCSSCEEEEEECSSCSSCEEEEES--SSEEEEECSSSCCEEEEEEC---SSSCCCCEEECTTCTTEE
T ss_pred ----CCCcEEeecCccCceeEEEeCCCCCCeEEEEeC--CCCEEEeeCCCCccceeecC---CCCceEEEEECCCCCCEE
Confidence 25677777 8999999999999 9999999998 99999999999888776543 45789999999999 899
Q ss_pred EEEcCCCeEEEEEcCCCC
Q 043172 545 AVGNAAGKVFLYKLNHYH 562 (564)
Q Consensus 545 asgs~dG~V~lw~l~~~~ 562 (564)
++++.||.|+||++....
T Consensus 322 ~s~~~d~~i~iw~~~~~~ 339 (416)
T 2pm9_A 322 ACASFDNKIEVQTLQNLT 339 (416)
T ss_dssp EECCSSSEEEEEESCCCC
T ss_pred EEEecCCcEEEEEccCCC
Confidence 999999999999998654
No 45
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1e-35 Score=300.36 Aligned_cols=285 Identities=14% Similarity=0.182 Sum_probs=240.0
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCce
Q 043172 261 STGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKA 340 (564)
Q Consensus 261 h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~ 340 (564)
|.++|.+++|+|+|++++++..++.+.+|... ..........|..+|.+++|+|++++|++++ ++.|++|++.++..
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~ 84 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIP--RHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGN 84 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCC--SEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTC
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccC--CccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCc
Confidence 56789999999999999998887777666443 2233344457999999999999999999998 99999999988753
Q ss_pred eeec-cc--cccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--EEEEee-ecCcEEEEEEecCCCEEEEEeCCC
Q 043172 341 DKIG-PL--VGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKE--LIGTLK-MNGTVRSLAFADDGKQLLSSGGDG 414 (564)
Q Consensus 341 ~~~~-~~--~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~--~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg 414 (564)
.... .+ .++. ..|.+++|+|++++|++++.+|.|++|++.+++ ....+. |...|.+++|+|++++|++++.+|
T Consensus 85 ~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 163 (337)
T 1gxr_A 85 KSPVSQLDCLNRD-NYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDG 163 (337)
T ss_dssp CSCSEEEECSCTT-SBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTS
T ss_pred eeeeecccccCCC-CcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCC
Confidence 2221 11 1333 479999999999999999999999999999887 444444 778899999999999999999999
Q ss_pred eEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCC
Q 043172 415 QVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDA 494 (564)
Q Consensus 415 ~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg 494 (564)
.|++||+++++.+..+..+ ...+.+++|+|++++|++++.+|.|++||+... +++..+. +...+.+++|+|++
T Consensus 164 ~v~~~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-----~~~~~~~-~~~~v~~~~~s~~~ 236 (337)
T 1gxr_A 164 NIAVWDLHNQTLVRQFQGH-TDGASCIDISNDGTKLWTGGLDNTVRSWDLREG-----RQLQQHD-FTSQIFSLGYCPTG 236 (337)
T ss_dssp CEEEEETTTTEEEEEECCC-SSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-----EEEEEEE-CSSCEEEEEECTTS
T ss_pred cEEEEeCCCCceeeeeecc-cCceEEEEECCCCCEEEEEecCCcEEEEECCCC-----ceEeeec-CCCceEEEEECCCC
Confidence 9999999999888877654 447899999999999999999999999999986 6666654 67889999999999
Q ss_pred cEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCCCC
Q 043172 495 QILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNHYH 562 (564)
Q Consensus 495 ~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~~~ 562 (564)
++|++++. ++.|++|++.+..... ...|...|++++|+|++++|++++.+|.|++|++...+
T Consensus 237 ~~l~~~~~--~~~i~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~ 298 (337)
T 1gxr_A 237 EWLAVGME--SSNVEVLHVNKPDKYQ----LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA 298 (337)
T ss_dssp SEEEEEET--TSCEEEEETTSSCEEE----ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred CEEEEEcC--CCcEEEEECCCCCeEE----EcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCe
Confidence 99999998 8999999999877653 23455789999999999999999999999999997654
No 46
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=3.9e-35 Score=304.22 Aligned_cols=292 Identities=12% Similarity=0.168 Sum_probs=234.4
Q ss_pred CCCCCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEEecCCCCceeEEE-----------EeCCcCeEEEEEee-CCCEEEE
Q 043172 257 ADESSTGPINSVQFHR-NAQLLLVAGLDRRLRFFQIDGKRNTKIQSI-----------FLEDCPVRKASFLP-DGSQAII 323 (564)
Q Consensus 257 ~~~~h~~~V~~l~fsp-dg~~l~s~s~dg~I~lwd~~~~~~~~~~~~-----------~~~~~~I~~l~fsp-dg~~l~s 323 (564)
...+|.++|++++|+| ++++|++|+.||.|++|++........... .+|..+|.+++|+| ++.+|++
T Consensus 38 ~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 117 (408)
T 4a11_B 38 VERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTS 117 (408)
T ss_dssp ECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEE
T ss_pred eeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEE
Confidence 4566999999999999 999999999999999999986544333222 14889999999999 7889999
Q ss_pred EeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCC---CCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEE
Q 043172 324 AGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPD---SSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLA 399 (564)
Q Consensus 324 ~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spd---g~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~ 399 (564)
++.++.|++||+.++....... +. ..+.++.++|. +.++++++.+|.|++||+.+++.+..+. |.+.|.+++
T Consensus 118 ~~~d~~i~iwd~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~ 193 (408)
T 4a11_B 118 SSFDKTLKVWDTNTLQTADVFN---FE-ETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVS 193 (408)
T ss_dssp EETTSEEEEEETTTTEEEEEEE---CS-SCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEE
T ss_pred EeCCCeEEEeeCCCCccceecc---CC-CceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEE
Confidence 9999999999999988755433 22 36889999985 4599999999999999999999888887 889999999
Q ss_pred EecCCC-EEEEEeCCCeEEEEECCCCc-eeEEEe--------------ecCCcceEEEEECCCCCEEEEEeCCCcEEEEe
Q 043172 400 FADDGK-QLLSSGGDGQVYHWDLRTRT-CIHRAV--------------DEGCINGTALCTSPDGTFFAAGSDSGIVNVYN 463 (564)
Q Consensus 400 ~spdg~-~l~s~s~dg~V~lwD~~~~~-~~~~~~--------------~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd 463 (564)
|+|++. +|++++.||.|++||++++. ++..+. ..+...+.+++|+|++++|++++.||.|++||
T Consensus 194 ~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 273 (408)
T 4a11_B 194 WSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWN 273 (408)
T ss_dssp ECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEE
Confidence 999998 58899999999999998765 333331 23455789999999999999999999999999
Q ss_pred CCcccCCcceeeEEccc-----cccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEe
Q 043172 464 RQEFLGGKRKPIKTIEN-----LTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFS 538 (564)
Q Consensus 464 ~~~~~~~~~~~~~~~~~-----~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fs 538 (564)
+... .....+.. ....+........+..+++++. ++.|++|++.++..+..+. .|.+.|++++|+
T Consensus 274 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~---~~~~~v~~~~~s 343 (408)
T 4a11_B 274 SSNG-----ENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPY--GSTIAVYTVYSGEQITMLK---GHYKTVDCCVFQ 343 (408)
T ss_dssp TTTC-----CBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEE--TTEEEEEETTTCCEEEEEC---CCSSCEEEEEEE
T ss_pred CCCC-----ccceeccccccccccccceeEEecCCCceEEEEec--CCEEEEEECcCCcceeeec---cCCCeEEEEEEc
Confidence 9886 33322221 1122222222334455556666 8999999999998887664 455889999999
Q ss_pred CCCCEEEEEcCCCeEEEEEcCCCC
Q 043172 539 PGGGFMAVGNAAGKVFLYKLNHYH 562 (564)
Q Consensus 539 pdg~~Lasgs~dG~V~lw~l~~~~ 562 (564)
|++.+|++|+.||.|++|++.+++
T Consensus 344 ~~~~~l~s~~~dg~i~iw~~~~~~ 367 (408)
T 4a11_B 344 SNFQELYSGSRDCNILAWVPSLYE 367 (408)
T ss_dssp TTTTEEEEEETTSCEEEEEECC--
T ss_pred CCCCEEEEECCCCeEEEEeCCCCC
Confidence 999999999999999999998765
No 47
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2.1e-35 Score=295.32 Aligned_cols=253 Identities=12% Similarity=0.149 Sum_probs=210.9
Q ss_pred CCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEee--CCCEEEEEeCCCeEEEEE
Q 043172 257 ADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLP--DGSQAIIAGRRKFFYSLD 334 (564)
Q Consensus 257 ~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fsp--dg~~l~s~~~dg~i~iwd 334 (564)
...+|.+.|++++|+|+|++||+|+.|++|+||++.......+..+.+|..+|.+++|+| ++++|++++.|++|++||
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd 83 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWK 83 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEE
T ss_pred eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEE
Confidence 356799999999999999999999999999999997655567888999999999999986 489999999999999999
Q ss_pred CCCCceeeeccccccCCcceEEEEEcCC--CCEEEEEeCCCeEEEEECCCCcE--EEEee-ecCcEEEEEEecC------
Q 043172 335 LVKAKADKIGPLVGREEKSLEFFEVSPD--SSVIAFVGNEGYILLVSSKTKEL--IGTLK-MNGTVRSLAFADD------ 403 (564)
Q Consensus 335 l~~~~~~~~~~~~~~~~~~v~~~~~spd--g~~la~~~~dg~I~lwd~~t~~~--~~~~~-~~~~V~~l~~spd------ 403 (564)
+.++....+..+.+|.. .|.+++|+|+ +.+|++++.||.|++||++++.. ...+. |...|.+++|+|+
T Consensus 84 ~~~~~~~~~~~~~~h~~-~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~ 162 (297)
T 2pm7_B 84 EENGRWSQIAVHAVHSA-SVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (297)
T ss_dssp BSSSCBCCCEEECCCSS-CEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred cCCCceEEEEEeecCCC-ceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence 99876444444555554 7999999997 89999999999999999987632 23333 8889999999997
Q ss_pred -------CCEEEEEeCCCeEEEEECCCCc----eeEEEeecCCcceEEEEECCCC---CEEEEEeCCCcEEEEeCCcccC
Q 043172 404 -------GKQLLSSGGDGQVYHWDLRTRT----CIHRAVDEGCINGTALCTSPDG---TFFAAGSDSGIVNVYNRQEFLG 469 (564)
Q Consensus 404 -------g~~l~s~s~dg~V~lwD~~~~~----~~~~~~~~~~~~i~~l~~sp~g---~~lasgs~dg~V~iwd~~~~~~ 469 (564)
+++|++|+.|++|++||++++. +...+. .|...|.+++|+|++ .+||+|+.|++|+|||+....
T Consensus 163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~-~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~- 240 (297)
T 2pm7_B 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE-GHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQ- 240 (297)
T ss_dssp -------CCEEEEEETTSCEEEEEEETTTTEEEEEEEEC-CCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT-
T ss_pred cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEec-CCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCC-
Confidence 5799999999999999998765 344444 345579999999985 799999999999999987631
Q ss_pred CcceeeEEc--cccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCC
Q 043172 470 GKRKPIKTI--ENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPS 515 (564)
Q Consensus 470 ~~~~~~~~~--~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s 515 (564)
.......+ ..|...|.+++|+|+|++||+++. |+.|+||+...
T Consensus 241 -~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~--D~~v~lw~~~~ 285 (297)
T 2pm7_B 241 -GPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG--DNKVTLWKENL 285 (297)
T ss_dssp -SCCEEEESSSSCCSSCEEEEEECSSSCCEEEEET--TSCEEEEEECT
T ss_pred -CccceeeeecccCCCcEEEEEECCCCCEEEEEcC--CCcEEEEEECC
Confidence 11112233 467889999999999999999998 99999999863
No 48
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.1e-35 Score=337.40 Aligned_cols=287 Identities=17% Similarity=0.243 Sum_probs=254.3
Q ss_pred CCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCC
Q 043172 258 DESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVK 337 (564)
Q Consensus 258 ~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~ 337 (564)
..+|.+.|++++|||++++|++|+.+|.|+||++.. ...+..+..|..+|.+++|+|++++|++++.++.|++|++.+
T Consensus 9 ~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~ 86 (814)
T 3mkq_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYET--QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT 86 (814)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTT--TEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT
T ss_pred eecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCC--CceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence 456999999999999999999999999999999874 557888889999999999999999999999999999999999
Q ss_pred CceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCC-cEEEEee-ecCcEEEEEEec-CCCEEEEEeCCC
Q 043172 338 AKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTK-ELIGTLK-MNGTVRSLAFAD-DGKQLLSSGGDG 414 (564)
Q Consensus 338 ~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~-~~~~~~~-~~~~V~~l~~sp-dg~~l~s~s~dg 414 (564)
++... .+.+|.. .|.+++|+|++.+|++++.+|.|++|++.++ .....+. |...|.+++|+| ++..|++++.||
T Consensus 87 ~~~~~--~~~~~~~-~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg 163 (814)
T 3mkq_A 87 GEKVV--DFEAHPD-YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR 163 (814)
T ss_dssp CCEEE--EEECCSS-CEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTS
T ss_pred CcEEE--EEecCCC-CEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCC
Confidence 88644 3555554 7999999999999999999999999999987 5566666 889999999999 889999999999
Q ss_pred eEEEEECCCCceeEEEeecCCcceEEEEECC--CCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcC
Q 043172 415 QVYHWDLRTRTCIHRAVDEGCINGTALCTSP--DGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNN 492 (564)
Q Consensus 415 ~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp--~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fsp 492 (564)
.|++||+.++.....+..++...+.+++|+| ++.+|++|+.+|.|++||+... .++..+.+|...|++++|+|
T Consensus 164 ~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-----~~~~~~~~~~~~v~~~~~~~ 238 (814)
T 3mkq_A 164 TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK-----SCVATLEGHMSNVSFAVFHP 238 (814)
T ss_dssp EEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT-----EEEEEEECCSSCEEEEEECS
T ss_pred eEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC-----cEEEEEcCCCCCEEEEEEcC
Confidence 9999999988888777776656789999999 9999999999999999999887 88889999999999999999
Q ss_pred CCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCC--EEEEEcCCCeEEEEEcCC
Q 043172 493 DAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGG--FMAVGNAAGKVFLYKLNH 560 (564)
Q Consensus 493 dg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~--~Lasgs~dG~V~lw~l~~ 560 (564)
++++|++++. |+.|++|++.++.....+... ...|++++|+|+|. ++++++ ++.+.+|++..
T Consensus 239 ~~~~l~~~~~--dg~v~vwd~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 302 (814)
T 3mkq_A 239 TLPIIISGSE--DGTLKIWNSSTYKVEKTLNVG---LERSWCIATHPTGRKNYIASGF-DNGFTVLSLGN 302 (814)
T ss_dssp SSSEEEEEET--TSCEEEEETTTCSEEEEECCS---SSSEEEEEECTTCGGGEEEEEE-TTEEEEEECSC
T ss_pred CCCEEEEEeC--CCeEEEEECCCCcEEEEeecC---CCcEEEEEEccCCCceEEEEEe-CCCEEEEEcCC
Confidence 9999999998 999999999998887765443 47899999999987 455555 66688898764
No 49
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.2e-35 Score=310.88 Aligned_cols=290 Identities=12% Similarity=0.140 Sum_probs=232.5
Q ss_pred CCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCC---------ceeEEEEeCC------------cCeEEEEEeeC
Q 043172 259 ESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRN---------TKIQSIFLED------------CPVRKASFLPD 317 (564)
Q Consensus 259 ~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~---------~~~~~~~~~~------------~~I~~l~fspd 317 (564)
..|.+.|++|+|+|+|.+||+|+.||.|+||++..... ..+..+.+|. .+|.+++|+|+
T Consensus 25 ~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~ 104 (447)
T 3dw8_B 25 VAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ 104 (447)
T ss_dssp CCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred ccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCC
Confidence 35789999999999999999999999999999975431 1466788888 88999999999
Q ss_pred C--CEEEEEeCCCeEEEEECCCCceee-------------------------------------ecc-ccccCCcceEEE
Q 043172 318 G--SQAIIAGRRKFFYSLDLVKAKADK-------------------------------------IGP-LVGREEKSLEFF 357 (564)
Q Consensus 318 g--~~l~s~~~dg~i~iwdl~~~~~~~-------------------------------------~~~-~~~~~~~~v~~~ 357 (564)
+ .+|++++.|+.|++|++.++.... ... ..+|. ..|.++
T Consensus 105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~ 183 (447)
T 3dw8_B 105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHT-YHINSI 183 (447)
T ss_dssp CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCS-SCCCEE
T ss_pred CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCC-cceEEE
Confidence 8 799999999999999987644310 001 23444 479999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECC-CCcEEEEe--------eecCcEEEEEEecCC-CEEEEEeCCCeEEEEECCCCce-
Q 043172 358 EVSPDSSVIAFVGNEGYILLVSSK-TKELIGTL--------KMNGTVRSLAFADDG-KQLLSSGGDGQVYHWDLRTRTC- 426 (564)
Q Consensus 358 ~~spdg~~la~~~~dg~I~lwd~~-t~~~~~~~--------~~~~~V~~l~~spdg-~~l~s~s~dg~V~lwD~~~~~~- 426 (564)
+|+|++++|+++ .||.|++||+. .++.+..+ .|...|++++|+|++ ++|++++.||.|++||++++..
T Consensus 184 ~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 262 (447)
T 3dw8_B 184 SINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALC 262 (447)
T ss_dssp EECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSS
T ss_pred EEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccc
Confidence 999999999998 79999999999 44555533 278899999999998 9999999999999999999886
Q ss_pred ---eEEEeecCC-----------cceEEEEECCCCCEEEEEeCCCcEEEEeCCc-ccCCcceeeEEccccccc-------
Q 043172 427 ---IHRAVDEGC-----------INGTALCTSPDGTFFAAGSDSGIVNVYNRQE-FLGGKRKPIKTIENLTTK------- 484 (564)
Q Consensus 427 ---~~~~~~~~~-----------~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~-~~~~~~~~~~~~~~~~~~------- 484 (564)
+..+..+.. ..+.+++|+|+|++|++++. |.|+|||++. . +++..+..|...
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~-----~~~~~~~~~~~~~~~l~~~ 336 (447)
T 3dw8_B 263 DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMEN-----RPVETYQVHEYLRSKLCSL 336 (447)
T ss_dssp CTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCS-----SCSCCEESCGGGTTTHHHH
T ss_pred cceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCc-----cccceeecccccccccccc
Confidence 566654432 27899999999999999999 9999999986 5 677777776532
Q ss_pred --------eeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCC-----------------------------CCC
Q 043172 485 --------VDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPP-----------------------------ANR 527 (564)
Q Consensus 485 --------I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~-----------------------------~~~ 527 (564)
+..++|+|++++|++++. |+.|+||++.++..+..... ...
T Consensus 337 ~~~~~i~~~~~~~~s~~~~~l~s~s~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (447)
T 3dw8_B 337 YENDCIFDKFECCWNGSDSVVMTGSY--NNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLD 414 (447)
T ss_dssp HHTSGGGCCCCEEECTTSSEEEEECS--TTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCC
T ss_pred ccccccccceEEEECCCCCEEEEecc--CCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccc
Confidence 334999999999999998 99999999998776431100 002
Q ss_pred CCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q 043172 528 NLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLN 559 (564)
Q Consensus 528 ~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~ 559 (564)
....|.+++|+|++.+||+++.++ +++|.-+
T Consensus 415 ~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 415 FNKKILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp TTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred cCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence 235689999999999999998776 8888643
No 50
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-36 Score=326.39 Aligned_cols=290 Identities=12% Similarity=0.099 Sum_probs=225.1
Q ss_pred CCCCeeEEEEcCCC---------CEEEE-------------------EeCCCcEEEEEecCCCCce--eEEEEeCCcCeE
Q 043172 261 STGPINSVQFHRNA---------QLLLV-------------------AGLDRRLRFFQIDGKRNTK--IQSIFLEDCPVR 310 (564)
Q Consensus 261 h~~~V~~l~fspdg---------~~l~s-------------------~s~dg~I~lwd~~~~~~~~--~~~~~~~~~~I~ 310 (564)
+.++|.+|+|+|++ ++||+ ++.|++|+||++.+..... ...+..|.+.|.
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~ 211 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW 211 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE
Confidence 45677777777765 55555 5578899999998654322 244667788999
Q ss_pred EEEEeeC------CCEEEEEeCCCeEEEEECCCCcee---------eeccccccCCcceEEEEEcCCCCEEEEEeCCCeE
Q 043172 311 KASFLPD------GSQAIIAGRRKFFYSLDLVKAKAD---------KIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYI 375 (564)
Q Consensus 311 ~l~fspd------g~~l~s~~~dg~i~iwdl~~~~~~---------~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I 375 (564)
+++|+|+ +.+|++++.|++|++||+.++... ....+.+|. ..|.+++|+|++ .|++|+.||+|
T Consensus 212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~-~~v~sv~~s~~~-~lasgs~DgtV 289 (524)
T 2j04_B 212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLAD-SLITTFDFLSPT-TVVCGFKNGFV 289 (524)
T ss_dssp EEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTT-TCEEEEEESSSS-EEEEEETTSEE
T ss_pred EEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCC-CCEEEEEecCCC-eEEEEeCCCEE
Confidence 9999996 579999999999999999876421 011344554 479999999864 89999999999
Q ss_pred EEEECCCCc-EEEEee-ecCcEEEE--EEecCC-CEEEEEeCCCeEEEEECCCCceeEEEeecCC-cceEEEEECCCCCE
Q 043172 376 LLVSSKTKE-LIGTLK-MNGTVRSL--AFADDG-KQLLSSGGDGQVYHWDLRTRTCIHRAVDEGC-INGTALCTSPDGTF 449 (564)
Q Consensus 376 ~lwd~~t~~-~~~~~~-~~~~V~~l--~~spdg-~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~-~~i~~l~~sp~g~~ 449 (564)
++||+.++. +...+. |...|+++ +|+|++ .+|++++.|++|+|||+++++++..+..+.. ..+.+++|+|+++.
T Consensus 290 ~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~ 369 (524)
T 2j04_B 290 AEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYS 369 (524)
T ss_dssp EEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTE
T ss_pred EEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCe
Confidence 999999764 344455 88999999 567887 8999999999999999998887766654432 24678999999999
Q ss_pred EEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCc------------
Q 043172 450 FAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYN------------ 517 (564)
Q Consensus 450 lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~------------ 517 (564)
|++++.+++|++||++.. ..+.++.+|...|++|+|+|+|++|++|+. |++|+||++....
T Consensus 370 l~s~~~d~tv~lwd~~~~-----~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~--Dgtv~lwd~~~~~~~~~~~~~~~~~ 442 (524)
T 2j04_B 370 YIYSDGASSLRAVPSRAA-----FAVHPLVSRETTITAIGVSRLHPMVLAGSA--DGSLIITNAARRLLHGIKNSSATQK 442 (524)
T ss_dssp EEEECSSSEEEEEETTCT-----TCCEEEEECSSCEEEEECCSSCCBCEEEET--TTEEECCBSCSSTTTCC------CC
T ss_pred EEEeCCCCcEEEEECccc-----ccceeeecCCCceEEEEeCCCCCeEEEEEC--CCEEEEEechHhhccccccCcccee
Confidence 999999999999999986 677788899999999999999999999998 9999999863210
Q ss_pred --ee-c-c-------------------------CCCCCCCCCCcEEEEEeCCCC---EEEEEcCCCeEEEEEcC
Q 043172 518 --VF-S-N-------------------------WPPANRNLQYPRCLDFSPGGG---FMAVGNAAGKVFLYKLN 559 (564)
Q Consensus 518 --~~-~-~-------------------------~~~~~~~~~~V~~l~fspdg~---~Lasgs~dG~V~lw~l~ 559 (564)
.+ . . .....+|.+.|++|+|+|++. +||+|+.+|.|+||++.
T Consensus 443 ~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 443 SLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLS 516 (524)
T ss_dssp CCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECS
T ss_pred eeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcc
Confidence 00 0 0 001124667899999999954 99999999999999985
No 51
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=4.1e-36 Score=314.06 Aligned_cols=284 Identities=15% Similarity=0.109 Sum_probs=233.9
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCcee
Q 043172 262 TGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKAD 341 (564)
Q Consensus 262 ~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~ 341 (564)
...+++++|+|++++|++++.|+.|++|++.... ....+..+ ..+....|+|++++|++++.++.|++||+.++...
T Consensus 56 ~~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~--~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 132 (420)
T 3vl1_A 56 VDAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRD--GSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQR 132 (420)
T ss_dssp CBCCTTCEEEEEETTEEEEEETTEEEEEECCSEE--TTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEE
T ss_pred cccccceeeeecCCeEEEEEcCCcEEEEEecccc--eeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCccee
Confidence 3456789999999999999999999999987432 22222333 34455578999999999999999999999988764
Q ss_pred eeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEeCCCeEEEEE
Q 043172 342 KIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQVYHWD 420 (564)
Q Consensus 342 ~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~V~lwD 420 (564)
.. +.+|.. .|.+++|+|++++|++++.||.|++||+.+++.+..+. |...|.+++|+|++++|++++.||.|++||
T Consensus 133 ~~--~~~h~~-~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd 209 (420)
T 3vl1_A 133 EI--DQAHVS-EITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 209 (420)
T ss_dssp EE--TTSSSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred ee--cccccC-ccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeE
Confidence 43 445554 79999999999999999999999999999999888888 899999999999999999999999999999
Q ss_pred CCCCceeEEEeec--CC---------------------cceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEE
Q 043172 421 LRTRTCIHRAVDE--GC---------------------INGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKT 477 (564)
Q Consensus 421 ~~~~~~~~~~~~~--~~---------------------~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~ 477 (564)
+++++++..+..+ +. ..+.+++|+|++++|++|+.+|.|++||++.. ..+..
T Consensus 210 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~ 284 (420)
T 3vl1_A 210 CGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSK-----EQTIQ 284 (420)
T ss_dssp TTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTC-----CEEEE
T ss_pred CCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCC-----ceeEE
Confidence 9999988887642 22 23344556889999999999999999999876 55554
Q ss_pred c-cccccceeEEEEcCCCc-EEEEEecCCCCeEEEEEcCCCce-eccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEE
Q 043172 478 I-ENLTTKVDFMKFNNDAQ-ILAICSTMKKNSLKLIHIPSYNV-FSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVF 554 (564)
Q Consensus 478 ~-~~~~~~I~~l~fspdg~-~La~~s~~~d~~I~lwdl~s~~~-~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~ 554 (564)
+ ..|...|++++|+|+++ +|++++. ++.|++|++.++.. +..+.. .+...|+++.| |++.+|++++.||.|+
T Consensus 285 ~~~~~~~~v~~~~~~~~~~~~l~~g~~--dg~i~vwd~~~~~~~~~~~~~--~~~~~v~~~~~-~~~~~l~s~~~d~~v~ 359 (420)
T 3vl1_A 285 LPSKFTCSCNSLTVDGNNANYIYAGYE--NGMLAQWDLRSPECPVGEFLI--NEGTPINNVYF-AAGALFVSSGFDTSIK 359 (420)
T ss_dssp ECCTTSSCEEEEEECSSCTTEEEEEET--TSEEEEEETTCTTSCSEEEEE--STTSCEEEEEE-ETTEEEEEETTTEEEE
T ss_pred cccccCCCceeEEEeCCCCCEEEEEeC--CCeEEEEEcCCCcCchhhhhc--cCCCCceEEEe-CCCCEEEEecCCccEE
Confidence 4 45788999999999999 9999998 99999999998753 333322 13466788755 5788999999999999
Q ss_pred EEEcCCC
Q 043172 555 LYKLNHY 561 (564)
Q Consensus 555 lw~l~~~ 561 (564)
+|++...
T Consensus 360 iw~~~~~ 366 (420)
T 3vl1_A 360 LDIISDP 366 (420)
T ss_dssp EEEECCT
T ss_pred EEeccCC
Confidence 9998763
No 52
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=2.5e-35 Score=298.90 Aligned_cols=282 Identities=11% Similarity=0.104 Sum_probs=238.2
Q ss_pred CCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCC-CceeEEEEeCCcCeEEEEEeeCCC-EEEEEeCCCeEEEEEC
Q 043172 258 DESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKR-NTKIQSIFLEDCPVRKASFLPDGS-QAIIAGRRKFFYSLDL 335 (564)
Q Consensus 258 ~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~-~~~~~~~~~~~~~I~~l~fspdg~-~l~s~~~dg~i~iwdl 335 (564)
..+|.+.|++++|+|++.+|++++.|+.|+||++.... ......+..|..+|.+++|+|+++ +|++++.++.|++|++
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 86 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL 86 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEe
Confidence 45799999999999999999999999999999998543 123455668999999999999999 9999999999999999
Q ss_pred -CCCceeeeccccc--cCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCC---------CcEEEEeeecCcEEEEEEecC
Q 043172 336 -VKAKADKIGPLVG--REEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKT---------KELIGTLKMNGTVRSLAFADD 403 (564)
Q Consensus 336 -~~~~~~~~~~~~~--~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t---------~~~~~~~~~~~~V~~l~~spd 403 (564)
.++... .+.+ |.. .|.+++|+| +.+|++++.++.|++||+.+ ++.+..+.+...|.+++|+|+
T Consensus 87 ~~~~~~~---~~~~~~~~~-~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 161 (342)
T 1yfq_A 87 IGSPSFQ---ALTNNEANL-GICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS 161 (342)
T ss_dssp SSSSSEE---ECBSCCCCS-CEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSS
T ss_pred ccCCceE---eccccCCCC-ceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCC
Confidence 888653 2444 544 799999999 99999999999999999988 777777778899999999988
Q ss_pred CCEEEEEeCCCeEEEEECCC-Cce-eEEEeecCCcceEEEEECC-CCCEEEEEeCCCcEEEEeCCccc-CCcceeeEEcc
Q 043172 404 GKQLLSSGGDGQVYHWDLRT-RTC-IHRAVDEGCINGTALCTSP-DGTFFAAGSDSGIVNVYNRQEFL-GGKRKPIKTIE 479 (564)
Q Consensus 404 g~~l~s~s~dg~V~lwD~~~-~~~-~~~~~~~~~~~i~~l~~sp-~g~~lasgs~dg~V~iwd~~~~~-~~~~~~~~~~~ 479 (564)
+ |++++.++.|++||+++ +.. .......+...+.+++|+| ++++|++|+.+|.|+||++.... .....++..+.
T Consensus 162 ~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~ 239 (342)
T 1yfq_A 162 R--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR 239 (342)
T ss_dssp E--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEE
T ss_pred c--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeee
Confidence 7 99999999999999998 553 3333344556789999999 99999999999999999987630 00125566666
Q ss_pred cccc---------ceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCC
Q 043172 480 NLTT---------KVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAA 550 (564)
Q Consensus 480 ~~~~---------~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~d 550 (564)
.|.. .|++++|+|++++|++++. ++.|++|++.+++.+..+..+ |.+.|++++ |++.+|++|+.|
T Consensus 240 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~--h~~~v~~~~--~~~~~l~s~s~D 313 (342)
T 1yfq_A 240 CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGS--DGIISCWNLQTRKKIKNFAKF--NEDSVVKIA--CSDNILCLATSD 313 (342)
T ss_dssp CCCCCTTCCSSCCCEEEEEECTTTCCEEEEET--TSCEEEEETTTTEEEEECCCC--SSSEEEEEE--ECSSEEEEEEEC
T ss_pred cccccccccccceeEEEEEEcCCCCEEEEecC--CceEEEEcCccHhHhhhhhcc--cCCCceEec--CCCCeEEEEecC
Confidence 6654 9999999999999999998 999999999999988765443 157899999 999999999999
Q ss_pred Ce
Q 043172 551 GK 552 (564)
Q Consensus 551 G~ 552 (564)
|.
T Consensus 314 g~ 315 (342)
T 1yfq_A 314 DT 315 (342)
T ss_dssp TH
T ss_pred Cc
Confidence 98
No 53
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=2.6e-35 Score=300.81 Aligned_cols=299 Identities=13% Similarity=0.116 Sum_probs=246.0
Q ss_pred eeeeeecccCCCCCCCCeeEEEEcCC---CCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEE
Q 043172 248 EYSRLIDANADESSTGPINSVQFHRN---AQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIA 324 (564)
Q Consensus 248 d~~rl~~~~~~~~h~~~V~~l~fspd---g~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~ 324 (564)
+...++......+|.+.|++|+|+|+ |.+|++|+.||.|+||++..........+..|..+|.+++|+|++++|+++
T Consensus 25 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 104 (368)
T 3mmy_A 25 NHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTA 104 (368)
T ss_dssp SSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred CCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEE
Confidence 34455566677889999999999999 699999999999999999864444447788899999999999999999999
Q ss_pred eCCCeEEEEECCCCceeeeccccccCCcceEEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEeeecCcEEEEEEec
Q 043172 325 GRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEV--SPDSSVIAFVGNEGYILLVSSKTKELIGTLKMNGTVRSLAFAD 402 (564)
Q Consensus 325 ~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~--spdg~~la~~~~dg~I~lwd~~t~~~~~~~~~~~~V~~l~~sp 402 (564)
+.++.|++||+.++.... +.+|.. .|.+++| +|++.+|++++.||.|++||+.+++.+..+.....+.++.+.+
T Consensus 105 ~~dg~v~iwd~~~~~~~~---~~~~~~-~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 180 (368)
T 3mmy_A 105 SCDKTAKMWDLSSNQAIQ---IAQHDA-PVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY 180 (368)
T ss_dssp ETTSEEEEEETTTTEEEE---EEECSS-CEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEET
T ss_pred cCCCcEEEEEcCCCCcee---eccccC-ceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecC
Confidence 999999999999988654 344444 7999999 8999999999999999999999999999888777788887774
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeEEEe-ecCCcceEEEEECCCCCE----EEEEeCCCcEEEEeCCcccCCcceeeEE
Q 043172 403 DGKQLLSSGGDGQVYHWDLRTRTCIHRAV-DEGCINGTALCTSPDGTF----FAAGSDSGIVNVYNRQEFLGGKRKPIKT 477 (564)
Q Consensus 403 dg~~l~s~s~dg~V~lwD~~~~~~~~~~~-~~~~~~i~~l~~sp~g~~----lasgs~dg~V~iwd~~~~~~~~~~~~~~ 477 (564)
..+++++.++.+++|++.......... ......+.++++.++... +++|+.+|.|++|++... ....++..
T Consensus 181 --~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~--~~~~~~~~ 256 (368)
T 3mmy_A 181 --PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPP--NPAKDNFT 256 (368)
T ss_dssp --TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCS--CHHHHSEE
T ss_pred --CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCC--Ccccccee
Confidence 478889999999999998765443322 223334556666555443 999999999999999875 22245666
Q ss_pred cccccc------------ceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEE
Q 043172 478 IENLTT------------KVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMA 545 (564)
Q Consensus 478 ~~~~~~------------~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~La 545 (564)
+..|.. +|++++|+|++++|++++. |+.|++|++.++..+..+. .|...|++++|+|+|.+|+
T Consensus 257 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~g~~l~ 331 (368)
T 3mmy_A 257 FKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGS--DGRFSFWDKDARTKLKTSE---QLDQPISACCFNHNGNIFA 331 (368)
T ss_dssp EECSEEC----CCCEEECCEEEEEECTTTCCEEEEET--TSCEEEEETTTTEEEEECC---CCSSCEEEEEECTTSSCEE
T ss_pred eeeeecccccccccccccceEEEEEecCCCEEEEEcc--CCeEEEEECCCCcEEEEec---CCCCCceEEEECCCCCeEE
Confidence 666665 7999999999999999998 9999999999998887665 4457899999999999999
Q ss_pred EEcCCCeEEEEEcC
Q 043172 546 VGNAAGKVFLYKLN 559 (564)
Q Consensus 546 sgs~dG~V~lw~l~ 559 (564)
+|+.|+....|++.
T Consensus 332 ~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 332 YASSYDWSKGHEFY 345 (368)
T ss_dssp EEECCCSTTCGGGC
T ss_pred EEeccccccccccc
Confidence 99998866655544
No 54
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2e-35 Score=303.66 Aligned_cols=277 Identities=17% Similarity=0.204 Sum_probs=218.6
Q ss_pred cccCCCeEEcCCCccCCCeeeee-eeecccCC----------CCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCC
Q 043172 228 LRTDEDLVVKSSAKLSPGLLEYS-RLIDANAD----------ESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRN 296 (564)
Q Consensus 228 l~~~~~~~~~~~~~l~~~~~d~~-rl~~~~~~----------~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~ 296 (564)
+...+.++++++.. ....||.. ++++.... .+|...|++++|+|++.+ ++++.||+|+|||+.....
T Consensus 50 fSpDG~~las~s~d-~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~-l~~s~dg~v~lWd~~~~~~ 127 (357)
T 4g56_B 50 YRRDGALLLAASSL-SSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGI-LVASDSGAVELWEILEKES 127 (357)
T ss_dssp ECSSSCEEEEEECS-SSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEE-EEEETTSCEEEC-------
T ss_pred ECCCCCEEEEEcCC-CCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCE-EEEECCCEEEEeeccccce
Confidence 56677777765433 23456643 45543322 258899999999999864 5677899999999975543
Q ss_pred cee--EEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCC-EEEEEeCCC
Q 043172 297 TKI--QSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSS-VIAFVGNEG 373 (564)
Q Consensus 297 ~~~--~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~-~la~~~~dg 373 (564)
..+ ....+|..+|.+++|+|++++|++++.++.|++||+.+++... .+.+|.. .|.+++|+|++. ++++++.||
T Consensus 128 ~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~--~~~~h~~-~v~~v~~s~~~~~~~~s~~~dg 204 (357)
T 4g56_B 128 LLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLK--SYNAHSS-EVNCVAACPGKDTIFLSCGEDG 204 (357)
T ss_dssp -CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEE--EECCCSS-CEEEEEECTTCSSCEEEEETTS
T ss_pred eEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEE--EEcCCCC-CEEEEEEccCCCceeeeeccCC
Confidence 322 3445789999999999999999999999999999999988644 3556654 799999999875 788999999
Q ss_pred eEEEEECCCCcEEEEee---ecCcEEEEEEecC-CCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCC-C
Q 043172 374 YILLVSSKTKELIGTLK---MNGTVRSLAFADD-GKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDG-T 448 (564)
Q Consensus 374 ~I~lwd~~t~~~~~~~~---~~~~V~~l~~spd-g~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g-~ 448 (564)
.|++||+++++.+..+. +...+++++|+|+ +.+|++|+.|+.|++||+++++++..+..+. ..|++++|+|++ +
T Consensus 205 ~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~-~~v~~l~~sp~~~~ 283 (357)
T 4g56_B 205 RILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHS-QNITGLAYSYHSSP 283 (357)
T ss_dssp CEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCS-SCEEEEEECSSSSC
T ss_pred ceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccc-eeEEEEEEcCCCCC
Confidence 99999999998776654 5678999999997 5688899999999999999999888776544 478999999987 5
Q ss_pred EEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcC-CCcEEEEEecCCCCeEEEEEcCCCce
Q 043172 449 FFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNN-DAQILAICSTMKKNSLKLIHIPSYNV 518 (564)
Q Consensus 449 ~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fsp-dg~~La~~s~~~d~~I~lwdl~s~~~ 518 (564)
+||+|+.||+|+|||+.++ +++..+ +|...|++|+|+| ++.+|++++. |++|++|++++...
T Consensus 284 ~lasgs~D~~i~iwd~~~~-----~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~--Dg~v~iW~~~~~~~ 346 (357)
T 4g56_B 284 FLASISEDCTVAVLDADFS-----EVFRDL-SHRDFVTGVAWSPLDHSKFTTVGW--DHKVLHHHLPSEGR 346 (357)
T ss_dssp CEEEEETTSCEEEECTTSC-----EEEEEC-CCSSCEEEEEECSSSTTEEEEEET--TSCEEEEECC----
T ss_pred EEEEEeCCCEEEEEECCCC-----cEeEEC-CCCCCEEEEEEeCCCCCEEEEEcC--CCeEEEEECCCCCc
Confidence 8999999999999999886 665554 7999999999998 8999999998 99999999976443
No 55
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=9.7e-35 Score=293.63 Aligned_cols=268 Identities=16% Similarity=0.227 Sum_probs=225.9
Q ss_pred CeEEcCCCccCCCeeeeeee-----ecccCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCc
Q 043172 233 DLVVKSSAKLSPGLLEYSRL-----IDANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDC 307 (564)
Q Consensus 233 ~~~~~~~~~l~~~~~d~~rl-----~~~~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~ 307 (564)
.++++++.+-....|++... .......+|...|++++|+|++.+|++|+.|++|+|||+. +...+..+.+|..
T Consensus 31 ~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~--~~~~~~~~~~h~~ 108 (319)
T 3frx_A 31 NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVA--TGETYQRFVGHKS 108 (319)
T ss_dssp TEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT--TTEEEEEEECCSS
T ss_pred cEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECC--CCCeeEEEccCCC
Confidence 56666556666667776421 2233456899999999999999999999999999999987 4457888999999
Q ss_pred CeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCC------CCEEEEEeCCCeEEEEECC
Q 043172 308 PVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPD------SSVIAFVGNEGYILLVSSK 381 (564)
Q Consensus 308 ~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spd------g~~la~~~~dg~I~lwd~~ 381 (564)
+|.+++|+|++.+|++++.|+.|++||+..... ..+.+|.. .|.++.|+|. +.+|++++.|+.|++||+.
T Consensus 109 ~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~---~~~~~h~~-~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~ 184 (319)
T 3frx_A 109 DVMSVDIDKKASMIISGSRDKTIKVWTIKGQCL---ATLLGHND-WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184 (319)
T ss_dssp CEEEEEECTTSCEEEEEETTSCEEEEETTSCEE---EEECCCSS-CEEEEEECCC------CCEEEEEETTSCEEEEETT
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeE---EEEeccCC-cEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECC
Confidence 999999999999999999999999999975443 34556655 7999999985 4589999999999999999
Q ss_pred CCcEEEEee-ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEE
Q 043172 382 TKELIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVN 460 (564)
Q Consensus 382 t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~ 460 (564)
+++....+. |...|.+++|+|++++|++++.||.|++||+.+++++..+..+ ..+.+++|+|++.+|++++.+ .++
T Consensus 185 ~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~sp~~~~la~~~~~-~i~ 261 (319)
T 3frx_A 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ--DEVFSLAFSPNRYWLAAATAT-GIK 261 (319)
T ss_dssp TTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC--SCEEEEEECSSSSEEEEEETT-EEE
T ss_pred cchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC--CcEEEEEEcCCCCEEEEEcCC-CcE
Confidence 999888777 8999999999999999999999999999999999988877654 368999999999999988865 599
Q ss_pred EEeCCcccCCcceeeEEcc--------ccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCC
Q 043172 461 VYNRQEFLGGKRKPIKTIE--------NLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSY 516 (564)
Q Consensus 461 iwd~~~~~~~~~~~~~~~~--------~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~ 516 (564)
+|++... ..+..+. .+...+.+++|+|+|++|++|+. |+.|+||++.++
T Consensus 262 v~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~--Dg~i~vWd~~t~ 318 (319)
T 3frx_A 262 VFSLDPQ-----YLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYT--DNVIRVWQVMTA 318 (319)
T ss_dssp EEEETTE-----EEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEET--TSCEEEEEEEEC
T ss_pred EEEeCcC-----eeeeccCccccccccCcCcceeEEEECCCCCEEEEeec--CceEEEEEEeec
Confidence 9999865 4444332 34567899999999999999999 999999998764
No 56
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.4e-34 Score=295.45 Aligned_cols=274 Identities=16% Similarity=0.203 Sum_probs=218.1
Q ss_pred CCCeEEcCCCccCCCeeeeeee-------ecccCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEE
Q 043172 231 DEDLVVKSSAKLSPGLLEYSRL-------IDANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIF 303 (564)
Q Consensus 231 ~~~~~~~~~~~l~~~~~d~~rl-------~~~~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~ 303 (564)
.+.++++++.+-...+|++... .......+|...|++++|+|++.+|++|+.|++|+|||+.. ...+..+.
T Consensus 38 d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~--~~~~~~~~ 115 (343)
T 2xzm_R 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRT--GTTYKRFV 115 (343)
T ss_dssp CCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTS--SCEEEEEE
T ss_pred CCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCC--CcEEEEEc
Confidence 4556666656666667776421 12234578999999999999999999999999999999974 45778889
Q ss_pred eCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCC----------CEEEEEeCCC
Q 043172 304 LEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDS----------SVIAFVGNEG 373 (564)
Q Consensus 304 ~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg----------~~la~~~~dg 373 (564)
+|..+|.+++|+|++++|++++.|+.|++||+............+|. ..|.+++|+|++ .+|++++.||
T Consensus 116 ~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~ 194 (343)
T 2xzm_R 116 GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHS-DWVSCVRYSPIMKSANKVQPFAPYFASVGWDG 194 (343)
T ss_dssp CCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCS-SCEEEEEECCCCCSCSCCCSSCCEEEEEETTS
T ss_pred CCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCC-ceeeeeeeccccccccccCCCCCEEEEEcCCC
Confidence 99999999999999999999999999999999854433322233444 479999999987 7999999999
Q ss_pred eEEEEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCC-CceeEEEeecCCcceEEEEECCCCCEEE
Q 043172 374 YILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRT-RTCIHRAVDEGCINGTALCTSPDGTFFA 451 (564)
Q Consensus 374 ~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~-~~~~~~~~~~~~~~i~~l~~sp~g~~la 451 (564)
.|++||. ..+....+. |...|.+++|+|+|++|++++.||.|++||+.. ......+.. ...+.+++|+|++.+++
T Consensus 195 ~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~--~~~v~~v~~sp~~~~la 271 (343)
T 2xzm_R 195 RLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDA--GSTINQIAFNPKLQWVA 271 (343)
T ss_dssp EEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEEC--SSCEEEEEECSSSCEEE
T ss_pred EEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecC--CCcEEEEEECCCCCEEE
Confidence 9999994 455666665 889999999999999999999999999999954 334444432 23589999999999887
Q ss_pred EEeCCCcEEEEeCCcccCCcceeeEEcc-----------ccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCC
Q 043172 452 AGSDSGIVNVYNRQEFLGGKRKPIKTIE-----------NLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSY 516 (564)
Q Consensus 452 sgs~dg~V~iwd~~~~~~~~~~~~~~~~-----------~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~ 516 (564)
+| .++.|+||++.+.. ..++..+. +|...|++++|+|+|++|++|+. |+.|++|++.++
T Consensus 272 ~~-~d~~v~iw~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~--Dg~v~~w~~~~g 341 (343)
T 2xzm_R 272 VG-TDQGVKIFNLMTQS---KAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFT--DGVIRTFSFETS 341 (343)
T ss_dssp EE-ESSCEEEEESSSCC---SCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEET--TSEEEEEEEEEE
T ss_pred EE-CCCCEEEEEeCCCC---CCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecC--CceEEEEEEEcc
Confidence 65 57789999998641 11222332 67788999999999999999998 999999998754
No 57
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.3e-34 Score=302.13 Aligned_cols=286 Identities=16% Similarity=0.203 Sum_probs=235.6
Q ss_pred CCCCC--eeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEe-CCcCeEEEEEeeCCCEEEEEeCCCeEEEEECC
Q 043172 260 SSTGP--INSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFL-EDCPVRKASFLPDGSQAIIAGRRKFFYSLDLV 336 (564)
Q Consensus 260 ~h~~~--V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~-~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~ 336 (564)
+|... +.+++|++ ..+++++.|+.|++|++.... ....+.. |...|.+++|+|++++|++++.+|.|++||+.
T Consensus 89 ~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~--~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 164 (401)
T 4aez_A 89 GIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGS--VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE 164 (401)
T ss_dssp TCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCC--EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCc--EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECc
Confidence 34444 55566665 568888899999999998543 4444444 78899999999999999999999999999999
Q ss_pred CCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECC-CCcEEEEee-ecCcEEEEEEecCCCEEEEEeCCC
Q 043172 337 KAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSK-TKELIGTLK-MNGTVRSLAFADDGKQLLSSGGDG 414 (564)
Q Consensus 337 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~-t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg 414 (564)
+++... .+.+|.. .|.+++| ++++|++++.+|.|++||++ ....+..+. |.+.|.+++|+|++++|++++.||
T Consensus 165 ~~~~~~--~~~~~~~-~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~ 239 (401)
T 4aez_A 165 SQTKLR--TMAGHQA-RVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDN 239 (401)
T ss_dssp TCCEEE--EECCCSS-CEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCeEEE--EecCCCC-ceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCC
Confidence 987644 3555554 7999999 46799999999999999998 456666666 899999999999999999999999
Q ss_pred eEEEEECCCCceeEEEeecCCcceEEEEECCCC-CEEEEEe--CCCcEEEEeCCcccCCcceeeEEccccccceeEEEEc
Q 043172 415 QVYHWDLRTRTCIHRAVDEGCINGTALCTSPDG-TFFAAGS--DSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFN 491 (564)
Q Consensus 415 ~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g-~~lasgs--~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fs 491 (564)
.|++||++++.++..+..+ ...+.+++|+|++ .++++|+ .+|.|++||+.++ +++..+. +...|.+++|+
T Consensus 240 ~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~-----~~~~~~~-~~~~v~~~~~s 312 (401)
T 4aez_A 240 VVQIWDARSSIPKFTKTNH-NAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG-----ARVNTVD-AGSQVTSLIWS 312 (401)
T ss_dssp CEEEEETTCSSEEEEECCC-SSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC-----CEEEEEE-CSSCEEEEEEC
T ss_pred eEEEccCCCCCccEEecCC-cceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC-----CEEEEEe-CCCcEEEEEEC
Confidence 9999999999888777654 4478999999976 4666665 7999999999987 7777775 56789999999
Q ss_pred CCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCCCC
Q 043172 492 NDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNHYH 562 (564)
Q Consensus 492 pdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~~~ 562 (564)
|++++|+++++..++.|++|++.++.....+. ...|.+.|++++|+|+|.+|++++.||.|++|++...+
T Consensus 313 ~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~-~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~ 382 (401)
T 4aez_A 313 PHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVD-IPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGD 382 (401)
T ss_dssp SSSSEEEEEECTTTCEEEEEEEETTEEEEEEE-EECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--
T ss_pred CCCCeEEEEeecCCCcEEEEecCCccceeEEE-ecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence 99999999764449999999999866544321 23456889999999999999999999999999997654
No 58
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.3e-34 Score=289.10 Aligned_cols=277 Identities=17% Similarity=0.201 Sum_probs=232.2
Q ss_pred cccCCCeEEcCCCccCCCeeeeeeeecccCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCc
Q 043172 228 LRTDEDLVVKSSAKLSPGLLEYSRLIDANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDC 307 (564)
Q Consensus 228 l~~~~~~~~~~~~~l~~~~~d~~rl~~~~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~ 307 (564)
+...+.+++.++..-...+|+...........+|...|++++|+|++++|++|+.|+.|++|++.. ...+..+.+|..
T Consensus 31 ~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~--~~~~~~~~~~~~ 108 (312)
T 4ery_A 31 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS--GKCLKTLKGHSN 108 (312)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--CCEEEEEECCSS
T ss_pred ECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCC--CcEEEEEcCCCC
Confidence 444556666554454555666543333334568999999999999999999999999999999874 457788899999
Q ss_pred CeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE
Q 043172 308 PVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIG 387 (564)
Q Consensus 308 ~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~ 387 (564)
.|.+++|+|++++|++++.++.|++||+.+++... .+..|.. .|.+++|+|++++|++++.+|.|++||+.+++.+.
T Consensus 109 ~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~ 185 (312)
T 4ery_A 109 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK--TLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 185 (312)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEE--EECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEE--EecCCCC-cEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceee
Confidence 99999999999999999999999999999987644 3455544 79999999999999999999999999999999887
Q ss_pred Eee--ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCc--ceEEEEECCCCCEEEEEeCCCcEEEEe
Q 043172 388 TLK--MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCI--NGTALCTSPDGTFFAAGSDSGIVNVYN 463 (564)
Q Consensus 388 ~~~--~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~--~i~~l~~sp~g~~lasgs~dg~V~iwd 463 (564)
.+. +...+..++|+|++++|++++.||.|++||+++++++..+..+... .+......+++.+|++|+.||.|++||
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd 265 (312)
T 4ery_A 186 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 265 (312)
T ss_dssp EECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEE
T ss_pred EEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEE
Confidence 775 5678999999999999999999999999999999988887654321 122233346788999999999999999
Q ss_pred CCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcC
Q 043172 464 RQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIP 514 (564)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~ 514 (564)
+... ..+..+.+|...|.+++|+|++++|++++...|+.|++|+..
T Consensus 266 ~~~~-----~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 266 LQTK-----EIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp TTTC-----CEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred CCCc-----hhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 9987 888999999999999999999999999985559999999864
No 59
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=6e-35 Score=292.00 Aligned_cols=255 Identities=15% Similarity=0.156 Sum_probs=208.5
Q ss_pred EEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCC--CCEEEEEeCCCeEEE
Q 043172 300 QSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPD--SSVIAFVGNEGYILL 377 (564)
Q Consensus 300 ~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spd--g~~la~~~~dg~I~l 377 (564)
..+.+|..+|++++|+|+|++|++++.|+.|+||++.++....+..+.+|.. .|.+++|+|+ +++|++++.|+.|++
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~-~V~~v~~s~~~~g~~l~s~s~D~~v~i 81 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEG-PVWRVDWAHPKFGTILASCSYDGKVMI 81 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSS-CEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccC-CeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence 3456799999999999999999999999999999998654333445677765 7999999864 899999999999999
Q ss_pred EECCCCc--EEEEee-ecCcEEEEEEecC--CCEEEEEeCCCeEEEEECCCCcee-EEEeecCCcceEEEEECCC-----
Q 043172 378 VSSKTKE--LIGTLK-MNGTVRSLAFADD--GKQLLSSGGDGQVYHWDLRTRTCI-HRAVDEGCINGTALCTSPD----- 446 (564)
Q Consensus 378 wd~~t~~--~~~~~~-~~~~V~~l~~spd--g~~l~s~s~dg~V~lwD~~~~~~~-~~~~~~~~~~i~~l~~sp~----- 446 (564)
||+.+++ .+..+. |...|.+++|+|+ +.+|++++.|+.|++||++++... ......+...+.+++|+|+
T Consensus 82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~ 161 (297)
T 2pm7_B 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (297)
T ss_dssp EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----
T ss_pred EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccc
Confidence 9999874 344454 8889999999997 889999999999999999876321 2223345567899999997
Q ss_pred --------CCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCC---cEEEEEecCCCCeEEEEEcCC
Q 043172 447 --------GTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDA---QILAICSTMKKNSLKLIHIPS 515 (564)
Q Consensus 447 --------g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg---~~La~~s~~~d~~I~lwdl~s 515 (564)
+++||+|+.|+.|+|||++... .......++.+|...|.+++|+|++ .+|++++. |++|+||++.+
T Consensus 162 ~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~-~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~--D~~v~iWd~~~ 238 (297)
T 2pm7_B 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDA-QTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQ--DRTCIIWTQDN 238 (297)
T ss_dssp --------CCEEEEEETTSCEEEEEEETTT-TEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET--TSCEEEEEESS
T ss_pred ccCCCCCCcceEEEEcCCCcEEEEEEcCCC-ceEEEEEEecCCCCceEEEEECCCCCCceEEEEEEC--CCcEEEEEeCC
Confidence 5799999999999999997640 1112567888999999999999985 89999998 99999999976
Q ss_pred Cce---eccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q 043172 516 YNV---FSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLN 559 (564)
Q Consensus 516 ~~~---~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~ 559 (564)
... ...+ ....+...|.+++|+|+|++||+++.||.|+||++.
T Consensus 239 ~~~~~~~~~~-~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 239 EQGPWKKTLL-KEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp TTSCCEEEES-SSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred CCCccceeee-ecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 431 1111 113455789999999999999999999999999986
No 60
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=5.7e-36 Score=310.30 Aligned_cols=282 Identities=15% Similarity=0.177 Sum_probs=230.4
Q ss_pred cccCCCeEEcCCCccCCCeeeeeeeecccCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCC-----CCceeEEE
Q 043172 228 LRTDEDLVVKSSAKLSPGLLEYSRLIDANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGK-----RNTKIQSI 302 (564)
Q Consensus 228 l~~~~~~~~~~~~~l~~~~~d~~rl~~~~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~-----~~~~~~~~ 302 (564)
+...+.++++++.+-...+|+............|...|.+++|+|++++|++|+.|+.|+||++... ..+....+
T Consensus 74 ~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~ 153 (380)
T 3iz6_a 74 WTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVL 153 (380)
T ss_dssp ECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBC
T ss_pred EcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeec
Confidence 3445555555555555556665433333445679999999999999999999999999999998642 22344567
Q ss_pred EeCCcCeEEEEEeeC-CCEEEEEeCCCeEEEEECCCCceeeecc--c-cccCCcceEEEEEcC-CCCEEEEEeCCCeEEE
Q 043172 303 FLEDCPVRKASFLPD-GSQAIIAGRRKFFYSLDLVKAKADKIGP--L-VGREEKSLEFFEVSP-DSSVIAFVGNEGYILL 377 (564)
Q Consensus 303 ~~~~~~I~~l~fspd-g~~l~s~~~dg~i~iwdl~~~~~~~~~~--~-~~~~~~~v~~~~~sp-dg~~la~~~~dg~I~l 377 (564)
.+|...|.++.|+|+ +..|++++.|+.|++||+.+++...... . .+|. ..|.+++|+| ++++|++|+.||.|++
T Consensus 154 ~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~l~sgs~D~~v~~ 232 (380)
T 3iz6_a 154 TGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHT-ADVLSLSINSLNANMFISGSCDTTVRL 232 (380)
T ss_dssp CCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCC-SCEEEEEECSSSCCEEEEEETTSCEEE
T ss_pred cCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCc-cCeEEEEeecCCCCEEEEEECCCeEEE
Confidence 789999999999996 4679999999999999999988754431 1 3344 4799999987 8899999999999999
Q ss_pred EECC-CCcEEEEee-ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCC------cceEEEEECCCCCE
Q 043172 378 VSSK-TKELIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGC------INGTALCTSPDGTF 449 (564)
Q Consensus 378 wd~~-t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~------~~i~~l~~sp~g~~ 449 (564)
||++ ++..+..+. |.+.|++++|+|++++|++++.||+|++||++++.++..+..+.. ..+++++|+|+|++
T Consensus 233 wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 312 (380)
T 3iz6_a 233 WDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRL 312 (380)
T ss_dssp EETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSE
T ss_pred EECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCE
Confidence 9998 456667776 899999999999999999999999999999999998877764321 23789999999999
Q ss_pred EEEEeCCCcEEEEeCCcccCCcceeeEEc----cccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCc
Q 043172 450 FAAGSDSGIVNVYNRQEFLGGKRKPIKTI----ENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYN 517 (564)
Q Consensus 450 lasgs~dg~V~iwd~~~~~~~~~~~~~~~----~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~ 517 (564)
|++|+.+|.|+|||+... ..+..+ .+|...|++++|+|+|++|++|+. |+.|+||++...+
T Consensus 313 l~~g~~dg~i~vwd~~~~-----~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~--D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 313 LFAGYSNGDCYVWDTLLA-----EMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSW--DKNLKIWAFSGHR 377 (380)
T ss_dssp EEEECTTSCEEEEETTTC-----CEEEEECCSCSSCCCCCCEEEECSSSSEEEEECT--TSCEEEEECCSSS
T ss_pred EEEEECCCCEEEEECCCC-----ceEEEEecccCCCCCceEEEEECCCCCEEEEeeC--CCCEEEEecCCCc
Confidence 999999999999999876 555555 578999999999999999999999 9999999987643
No 61
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.4e-34 Score=343.64 Aligned_cols=289 Identities=16% Similarity=0.177 Sum_probs=251.5
Q ss_pred CCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCC
Q 043172 258 DESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVK 337 (564)
Q Consensus 258 ~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~ 337 (564)
..+|.+.|++++|+|++++|++|+.||+|+||++.. ...+..+.+|...|.+++|+|+|++|++++.|+.|++||+.+
T Consensus 611 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~--~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~ 688 (1249)
T 3sfz_A 611 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAET--GEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT 688 (1249)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred EecccccEEEEEECCCCCEEEEEeCCCeEEEEECCC--CCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC
Confidence 457999999999999999999999999999999874 457888899999999999999999999999999999999999
Q ss_pred CceeeeccccccCCcceEEEEEcC--CCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEeCCC
Q 043172 338 AKADKIGPLVGREEKSLEFFEVSP--DSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGGDG 414 (564)
Q Consensus 338 ~~~~~~~~~~~~~~~~v~~~~~sp--dg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg 414 (564)
++... .+.+|.. .|.+++|+| ++.++++++.||.|++||+.+++.+..+. |.+.|++++|+|++++|++++.||
T Consensus 689 ~~~~~--~~~~~~~-~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg 765 (1249)
T 3sfz_A 689 GKLVH--TYDEHSE-QVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADG 765 (1249)
T ss_dssp CCEEE--EEECCSS-CEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSS
T ss_pred CceEE--EEcCCCC-cEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCC
Confidence 98644 3556654 799999999 55689999999999999999999998887 899999999999999999999999
Q ss_pred eEEEEECCCCceeEEEe------------------------------------------------------ecCCcceEE
Q 043172 415 QVYHWDLRTRTCIHRAV------------------------------------------------------DEGCINGTA 440 (564)
Q Consensus 415 ~V~lwD~~~~~~~~~~~------------------------------------------------------~~~~~~i~~ 440 (564)
.|++||+.++.....+. ..+...+.+
T Consensus 766 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~ 845 (1249)
T 3sfz_A 766 TLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQY 845 (1249)
T ss_dssp EEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCE
T ss_pred eEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEE
Confidence 99999998776544332 133446788
Q ss_pred EEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCC----
Q 043172 441 LCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSY---- 516 (564)
Q Consensus 441 l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~---- 516 (564)
++|+|+++++++|+.+|.|++|++.+. .++..+.+|...|++++|+|+|++|++++. |+.|++|++.+.
T Consensus 846 ~~~sp~~~~l~~~~~dg~v~vwd~~~~-----~~~~~~~~h~~~v~~v~~spdg~~l~s~s~--dg~v~vw~~~~~~~~~ 918 (1249)
T 3sfz_A 846 CDFSPYDHLAVIALSQYCVELWNIDSR-----LKVADCRGHLSWVHGVMFSPDGSSFLTASD--DQTIRVWETKKVCKNS 918 (1249)
T ss_dssp EEECSSTTEEEEECSSSCEEEEETTTT-----EEEEEECCCSSCEEEEEECTTSSEEEEEET--TSCEEEEEHHHHHSCC
T ss_pred EEEcCCCCEEEEEeCCCeEEEEEcCCC-----ceeeecCCCccceEEEEECCCCCEEEEEeC--CCeEEEEEccccceee
Confidence 999999999999999999999999987 888899999999999999999999999998 899999986421
Q ss_pred ---------------------------------------------------------------------------ceecc
Q 043172 517 ---------------------------------------------------------------------------NVFSN 521 (564)
Q Consensus 517 ---------------------------------------------------------------------------~~~~~ 521 (564)
....
T Consensus 919 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~- 997 (1249)
T 3sfz_A 919 AIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFS- 997 (1249)
T ss_dssp SSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEE-
T ss_pred eecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceee-
Confidence 1111
Q ss_pred CCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCCC
Q 043172 522 WPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNHY 561 (564)
Q Consensus 522 ~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~~ 561 (564)
....|.+.|++++|+|+|++|++++.||.|++|++.+.
T Consensus 998 --~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~ 1035 (1249)
T 3sfz_A 998 --SGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTG 1035 (1249)
T ss_dssp --ECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTT
T ss_pred --ecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC
Confidence 12346678999999999999999999999999998764
No 62
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-34 Score=293.69 Aligned_cols=275 Identities=15% Similarity=0.192 Sum_probs=208.2
Q ss_pred eEEcCCCccCCCeeeeee--eecccC--CCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCC-----CCceeEEEEe
Q 043172 234 LVVKSSAKLSPGLLEYSR--LIDANA--DESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGK-----RNTKIQSIFL 304 (564)
Q Consensus 234 ~~~~~~~~l~~~~~d~~r--l~~~~~--~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~-----~~~~~~~~~~ 304 (564)
++++++..-...+|++.. ...... ..+|..+|++|+|+|++++|++|+.|++|+||++... ....+..+.+
T Consensus 26 ~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~ 105 (330)
T 2hes_X 26 ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEG 105 (330)
T ss_dssp EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC-
T ss_pred EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcC
Confidence 555544555555665542 111111 2349999999999999999999999999999998532 2345677888
Q ss_pred CCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCC-c-eeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 043172 305 EDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKA-K-ADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKT 382 (564)
Q Consensus 305 ~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~-~-~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t 382 (564)
|..+|.+++|+|+|++|++++.|+.|++||+... . ...+..+.+|.. .|.+++|+|++.+|++++.|+.|++|++.+
T Consensus 106 h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~ 184 (330)
T 2hes_X 106 HENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQ-DVKHVIWHPSEALLASSSYDDTVRIWKDYD 184 (330)
T ss_dssp ---CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSS-CEEEEEECSSSSEEEEEETTSCEEEEEEET
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCC-ceEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence 9999999999999999999999999999999532 2 122334556654 799999999999999999999999999887
Q ss_pred C--cEEEEee-ecCcEEEEEEecC--CCEEEEEeCCCeEEEEECCCC--------ceeEEEeecCCcceEEEEECCCCCE
Q 043172 383 K--ELIGTLK-MNGTVRSLAFADD--GKQLLSSGGDGQVYHWDLRTR--------TCIHRAVDEGCINGTALCTSPDGTF 449 (564)
Q Consensus 383 ~--~~~~~~~-~~~~V~~l~~spd--g~~l~s~s~dg~V~lwD~~~~--------~~~~~~~~~~~~~i~~l~~sp~g~~ 449 (564)
+ +++..+. |.+.|.+++|+|+ +.+|++++.|++|++||+..+ .+...+...+...|.+++|++++ +
T Consensus 185 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~ 263 (330)
T 2hes_X 185 DDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-L 263 (330)
T ss_dssp TEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-C
T ss_pred CCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-E
Confidence 6 5666676 8899999999998 678999999999999999754 33444443356689999999765 8
Q ss_pred EEEEeCCCcEEEEeCCcccCCcceeeE-Ecccccc-ceeEEEEcC--CCcEEEEEecCCCCeEEEEEcCC
Q 043172 450 FAAGSDSGIVNVYNRQEFLGGKRKPIK-TIENLTT-KVDFMKFNN--DAQILAICSTMKKNSLKLIHIPS 515 (564)
Q Consensus 450 lasgs~dg~V~iwd~~~~~~~~~~~~~-~~~~~~~-~I~~l~fsp--dg~~La~~s~~~d~~I~lwdl~s 515 (564)
|++|+.||.|+||+...+ ....+. .+..|.. .|++++|+| ++++|++|+. |+.|+||++..
T Consensus 264 l~s~~~dg~v~iw~~~~~---~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~--Dg~v~~W~~~~ 328 (330)
T 2hes_X 264 IASVGADGVLAVYEEVDG---EWKVFAKRALCHGVYEINVVKWLELNGKTILATGGD--DGIVNFWSLEK 328 (330)
T ss_dssp EEEEETTSCEEEEEEETT---EEEEEEEESCTTTTSCEEEEEEC-----CCEEEEET--TSEEEEEEC--
T ss_pred EEEEeCCCEEEEEEcCCC---ceEEEeccccccccceEEEEEEecCCCceEEEEecC--CCcEEEEEecc
Confidence 999999999999998753 112232 3456776 899999999 7899999998 99999999864
No 63
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=4.5e-34 Score=297.36 Aligned_cols=240 Identities=19% Similarity=0.252 Sum_probs=209.3
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCcee
Q 043172 262 TGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKAD 341 (564)
Q Consensus 262 ~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~ 341 (564)
...|++++|+|++++|++|+.|++|+|||+.. ...+..+.+|...|.+++|+|++++|++++.|+.|++||+.+++..
T Consensus 123 ~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~--~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~ 200 (393)
T 1erj_A 123 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIEN--RKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCS 200 (393)
T ss_dssp CCBEEEEEECTTSSEEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred ceeEEEEEECCCCCEEEEEcCCCeEEEEECCC--CcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeE
Confidence 34599999999999999999999999999874 4577788899999999999999999999999999999999998865
Q ss_pred eeccccccCCcceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEe--------eecCcEEEEEEecCCCEEEEEeC
Q 043172 342 KIGPLVGREEKSLEFFEVSP-DSSVIAFVGNEGYILLVSSKTKELIGTL--------KMNGTVRSLAFADDGKQLLSSGG 412 (564)
Q Consensus 342 ~~~~~~~~~~~~v~~~~~sp-dg~~la~~~~dg~I~lwd~~t~~~~~~~--------~~~~~V~~l~~spdg~~l~s~s~ 412 (564)
... . +. ..+.+++|+| ++++|++++.||.|++||+.++..+..+ .|...|.+++|+|++++|++++.
T Consensus 201 ~~~--~-~~-~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~ 276 (393)
T 1erj_A 201 LTL--S-IE-DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL 276 (393)
T ss_dssp EEE--E-CS-SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEE--E-cC-CCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC
Confidence 432 2 22 2689999999 8999999999999999999999888776 27789999999999999999999
Q ss_pred CCeEEEEECCCC------------ceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccc
Q 043172 413 DGQVYHWDLRTR------------TCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIEN 480 (564)
Q Consensus 413 dg~V~lwD~~~~------------~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~ 480 (564)
|+.|++||+++. .+...+.. +...+.+++|+|++.+|++|+.||.|++||+.++ +++..+.+
T Consensus 277 d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~-----~~~~~l~~ 350 (393)
T 1erj_A 277 DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIG-HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG-----NPLLMLQG 350 (393)
T ss_dssp TSEEEEEEC---------------CEEEEEEC-CSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC-----CEEEEEEC
T ss_pred CCEEEEEECCCCCCcccccCCCCCcceEEEec-ccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC-----eEEEEECC
Confidence 999999999763 23334443 4447899999999999999999999999999987 88899999
Q ss_pred cccceeEEEEcC------CCcEEEEEecCCCCeEEEEEcCC
Q 043172 481 LTTKVDFMKFNN------DAQILAICSTMKKNSLKLIHIPS 515 (564)
Q Consensus 481 ~~~~I~~l~fsp------dg~~La~~s~~~d~~I~lwdl~s 515 (564)
|...|.+++|++ ++.+|++|+. |+.|+||++..
T Consensus 351 h~~~v~~v~~~~~~~~~p~~~~l~sgs~--Dg~i~iW~~~~ 389 (393)
T 1erj_A 351 HRNSVISVAVANGSSLGPEYNVFATGSG--DCKARIWKYKK 389 (393)
T ss_dssp CSSCEEEEEECSSCTTCTTCEEEEEEET--TSEEEEEEEEE
T ss_pred CCCCEEEEEecCCcCcCCCCCEEEEECC--CCcEEECcccc
Confidence 999999999986 6889999999 99999999864
No 64
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=6.1e-34 Score=311.95 Aligned_cols=311 Identities=13% Similarity=0.123 Sum_probs=241.1
Q ss_pred eEEcCCCccCCCeeeeeeeecccCCCCCCC---CeeEEEEcCC-CCEEEEEeCCCcEEEEEecCCCCceeEEE-E---eC
Q 043172 234 LVVKSSAKLSPGLLEYSRLIDANADESSTG---PINSVQFHRN-AQLLLVAGLDRRLRFFQIDGKRNTKIQSI-F---LE 305 (564)
Q Consensus 234 ~~~~~~~~l~~~~~d~~rl~~~~~~~~h~~---~V~~l~fspd-g~~l~s~s~dg~I~lwd~~~~~~~~~~~~-~---~~ 305 (564)
+++.++..-...+|+...........+|.. .|++++|+|+ +++|++++.|+.|++|++.. ...+..+ . .|
T Consensus 175 ~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~--~~~~~~~~~~~~~~ 252 (615)
T 1pgu_A 175 RSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKS--GEFLKYIEDDQEPV 252 (615)
T ss_dssp EEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTT--CCEEEECCBTTBCC
T ss_pred EEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCC--CCEeEEeccccccc
Confidence 344444444455666554444455667888 9999999999 99999999999999999874 4466666 5 79
Q ss_pred CcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccc-cCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 043172 306 DCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVG-REEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKE 384 (564)
Q Consensus 306 ~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~-~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~ 384 (564)
..+|.+++|+ ++.+|++++.++.|++||+.+++......... .....+.++.|+ ++.++++++.+|.|++||+.+++
T Consensus 253 ~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~ 330 (615)
T 1pgu_A 253 QGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDE 330 (615)
T ss_dssp CSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEE
T ss_pred CCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCc
Confidence 9999999999 99999999999999999999988754433221 112357778875 89999999999999999999877
Q ss_pred EEEEee-ecCcEEEEEEecC---------------------------------CCEEE----------------------
Q 043172 385 LIGTLK-MNGTVRSLAFADD---------------------------------GKQLL---------------------- 408 (564)
Q Consensus 385 ~~~~~~-~~~~V~~l~~spd---------------------------------g~~l~---------------------- 408 (564)
.+..+. |...|++++| |+ +..|+
T Consensus 331 ~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~ 409 (615)
T 1pgu_A 331 VLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQP 409 (615)
T ss_dssp EEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCE
T ss_pred EEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCc
Confidence 776665 4444444444 22 33344
Q ss_pred ---------------------------------------------------EEeC-CCeEEEEECCCCceeEEEeecCCc
Q 043172 409 ---------------------------------------------------SSGG-DGQVYHWDLRTRTCIHRAVDEGCI 436 (564)
Q Consensus 409 ---------------------------------------------------s~s~-dg~V~lwD~~~~~~~~~~~~~~~~ 436 (564)
+++. ++.|++||+.++.........+..
T Consensus 410 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~ 489 (615)
T 1pgu_A 410 KVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRA 489 (615)
T ss_dssp EEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSS
T ss_pred eEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccC
Confidence 4444 555555555443332111223455
Q ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccc-cccceeEEEEcC----------CCcEEEEEecCCC
Q 043172 437 NGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIEN-LTTKVDFMKFNN----------DAQILAICSTMKK 505 (564)
Q Consensus 437 ~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~-~~~~I~~l~fsp----------dg~~La~~s~~~d 505 (564)
.+++++|+|++++|++|+.||.|+||++..+ +++..+.+ |...|++++|+| ++++|++++. |
T Consensus 490 ~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~-----~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~--d 562 (615)
T 1pgu_A 490 KPSYISISPSETYIAAGDVMGKILLYDLQSR-----EVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSL--D 562 (615)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTT-----EEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEET--T
T ss_pred ceEEEEECCCCCEEEEcCCCCeEEEeeCCCC-----cceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcC--C
Confidence 7899999999999999999999999999987 88888887 999999999999 9999999999 9
Q ss_pred CeEEEEEcCCC-ceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCC
Q 043172 506 NSLKLIHIPSY-NVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNH 560 (564)
Q Consensus 506 ~~I~lwdl~s~-~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~ 560 (564)
+.|++|++.++ ..+..+ ..|...|++++|+|++. |++++.||.|++|++..
T Consensus 563 g~i~iw~~~~~~~~~~~~---~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 563 TNIFIYSVKRPMKIIKAL---NAHKDGVNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp SCEEEEESSCTTCCEEET---TSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred CcEEEEECCCCceechhh---hcCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 99999999987 555544 44568899999999999 99999999999999874
No 65
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.4e-33 Score=298.15 Aligned_cols=308 Identities=16% Similarity=0.234 Sum_probs=260.8
Q ss_pred cccCCCeEEcCCCccCCCeeeeeeeecccCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCc
Q 043172 228 LRTDEDLVVKSSAKLSPGLLEYSRLIDANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDC 307 (564)
Q Consensus 228 l~~~~~~~~~~~~~l~~~~~d~~rl~~~~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~ 307 (564)
+...+++++.++..-...+|++..........+|.++|++++|+ +.+|++|+.||+|++|++.. ...+..+.+|..
T Consensus 125 ~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~--~~~~~~~~~h~~ 200 (445)
T 2ovr_B 125 LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAET--GECIHTLYGHTS 200 (445)
T ss_dssp EEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTT--TEEEEEECCCSS
T ss_pred EEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCc--CcEEEEECCCCC
Confidence 44456677666666666777776555555677899999999998 56999999999999999874 457888889999
Q ss_pred CeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE
Q 043172 308 PVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIG 387 (564)
Q Consensus 308 ~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~ 387 (564)
+|.+++|+ ++.|++++.++.|++||+.+++... .+.+|.. .|.++.| ++.++++++.+|.|++||+.+++.+.
T Consensus 201 ~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~--~~~~~~~-~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~ 273 (445)
T 2ovr_B 201 TVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLH--VLMGHVA-AVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLH 273 (445)
T ss_dssp CEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEE--EEECCSS-CEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEE
T ss_pred cEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEE--EEcCCcc-cEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeE
Confidence 99999996 5789999999999999999988644 3555554 7889988 78899999999999999999999998
Q ss_pred Eee-ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCc
Q 043172 388 TLK-MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQE 466 (564)
Q Consensus 388 ~~~-~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~ 466 (564)
.+. |...|.+++| ++.+|++++.||.|++||+++++++..+..+.. .+.++.+ ++.+|++|+.||.|++||+.+
T Consensus 274 ~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~v~~~~~--~~~~l~~~~~dg~i~vwd~~~ 348 (445)
T 2ovr_B 274 TLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS-LTSGMEL--KDNILVSGNADSTVKIWDIKT 348 (445)
T ss_dssp EECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCS-CEEEEEE--ETTEEEEEETTSCEEEEETTT
T ss_pred EecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcc-cEEEEEE--eCCEEEEEeCCCeEEEEECCC
Confidence 888 8899999999 789999999999999999999999888765543 5666665 567999999999999999988
Q ss_pred ccCCcceeeEEccc---cccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCC--CCCCCCCCcEEEEEeCCC
Q 043172 467 FLGGKRKPIKTIEN---LTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWP--PANRNLQYPRCLDFSPGG 541 (564)
Q Consensus 467 ~~~~~~~~~~~~~~---~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~--~~~~~~~~V~~l~fspdg 541 (564)
+ +++..+.. |...|++++|+ +.+|++++. ||.|++|++.+++.+..+. ....+.+.|++++|+|++
T Consensus 349 ~-----~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 419 (445)
T 2ovr_B 349 G-----QCLQTLQGPNKHQSAVTCLQFN--KNFVITSSD--DGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTK 419 (445)
T ss_dssp C-----CEEEEECSTTSCSSCEEEEEEC--SSEEEEEET--TSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSE
T ss_pred C-----cEEEEEccCCCCCCCEEEEEEC--CCEEEEEeC--CCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCE
Confidence 7 77777765 88899999995 679999998 9999999999998877652 223456889999999999
Q ss_pred CEEEEEcCCCe----EEEEEcCC
Q 043172 542 GFMAVGNAAGK----VFLYKLNH 560 (564)
Q Consensus 542 ~~Lasgs~dG~----V~lw~l~~ 560 (564)
.+|++|+.||+ |.+|++..
T Consensus 420 ~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 420 LVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp EEEEEECSSSSSCCEEEEEECCC
T ss_pred EEEEEcccCCCCccEEEEEECCC
Confidence 99999999997 99999874
No 66
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.5e-33 Score=299.13 Aligned_cols=280 Identities=11% Similarity=0.195 Sum_probs=238.7
Q ss_pred CCCCCCCe-eEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECC
Q 043172 258 DESSTGPI-NSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLV 336 (564)
Q Consensus 258 ~~~h~~~V-~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~ 336 (564)
..+|...| +++.| ++.+|++|+.||+|++|++. ....+..+.+|..+|.+++|+|++ .|++++.|+.|++||+.
T Consensus 117 l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~--~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~ 191 (464)
T 3v7d_B 117 LRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSI--NKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIK 191 (464)
T ss_dssp EECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETT--TTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETT
T ss_pred EcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECC--CCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECC
Confidence 34687774 66666 46799999999999999987 455788888999999999999988 99999999999999999
Q ss_pred CCceeeeccccccCCcceEEEEEc--CCCCEEEEEeCCCeEEEEECCCCcE-----------------------EEEee-
Q 043172 337 KAKADKIGPLVGREEKSLEFFEVS--PDSSVIAFVGNEGYILLVSSKTKEL-----------------------IGTLK- 390 (564)
Q Consensus 337 ~~~~~~~~~~~~~~~~~v~~~~~s--pdg~~la~~~~dg~I~lwd~~t~~~-----------------------~~~~~- 390 (564)
+++... .+.+|.. .|.+++|+ +++.+|++++.||.|++||+.++.. +..+.
T Consensus 192 ~~~~~~--~~~~h~~-~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (464)
T 3v7d_B 192 KGCCTH--VFEGHNS-TVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG 268 (464)
T ss_dssp TTEEEE--EECCCSS-CEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECC
T ss_pred CCcEEE--EECCCCC-ccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccC
Confidence 988644 3555554 79999998 5789999999999999999987753 23333
Q ss_pred ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCC
Q 043172 391 MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGG 470 (564)
Q Consensus 391 ~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~ 470 (564)
|...|.++ ++++++|++++.||.|++||+++++++..+..+ ...+.+++|+|++++|++|+.||.|++||+.++
T Consensus 269 ~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~--- 342 (464)
T 3v7d_B 269 HMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGH-TDRIYSTIYDHERKRCISASMDTTIRIWDLENG--- 342 (464)
T ss_dssp CSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEEETTTTEEEEEETTSCEEEEETTTT---
T ss_pred ccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC---
Confidence 66777776 567899999999999999999999998887654 447999999999999999999999999999987
Q ss_pred cceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCC
Q 043172 471 KRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAA 550 (564)
Q Consensus 471 ~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~d 550 (564)
+++.++.+|...|.+++|+ +.+|++++. |+.|++|++.++.....+. +...+..++|+|++.+|++|+ +
T Consensus 343 --~~~~~~~~h~~~v~~~~~~--~~~l~s~s~--dg~v~vwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~-d 411 (464)
T 3v7d_B 343 --ELMYTLQGHTALVGLLRLS--DKFLVSAAA--DGSIRGWDANDYSRKFSYH----HTNLSAITTFYVSDNILVSGS-E 411 (464)
T ss_dssp --EEEEEECCCSSCEEEEEEC--SSEEEEEET--TSEEEEEETTTCCEEEEEE----CTTCCCEEEEEECSSEEEEEE-T
T ss_pred --cEEEEEeCCCCcEEEEEEc--CCEEEEEeC--CCcEEEEECCCCceeeeec----CCCCccEEEEEeCCCEEEEec-C
Confidence 8999999999999999997 579999998 9999999999876654432 335678899999999999998 8
Q ss_pred CeEEEEEcCCCC
Q 043172 551 GKVFLYKLNHYH 562 (564)
Q Consensus 551 G~V~lw~l~~~~ 562 (564)
|.|++|++.+.+
T Consensus 412 g~i~iwd~~~g~ 423 (464)
T 3v7d_B 412 NQFNIYNLRSGK 423 (464)
T ss_dssp TEEEEEETTTCC
T ss_pred CeEEEEECCCCc
Confidence 999999998754
No 67
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=3.2e-35 Score=296.77 Aligned_cols=252 Identities=15% Similarity=0.151 Sum_probs=204.6
Q ss_pred CCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEee--CCCEEEEEeCCCeEEEEEC
Q 043172 258 DESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLP--DGSQAIIAGRRKFFYSLDL 335 (564)
Q Consensus 258 ~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fsp--dg~~l~s~~~dg~i~iwdl 335 (564)
..+|.++|++++|+|+|++|++|+.|++|+||++.......+..+.+|..+|.+++|+| ++++|++++.|+.|++||+
T Consensus 9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~ 88 (316)
T 3bg1_A 9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWRE 88 (316)
T ss_dssp -----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECC
T ss_pred cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEEC
Confidence 45799999999999999999999999999999998654446778899999999999986 4899999999999999999
Q ss_pred CCCceeeeccccccCCcceEEEEEcCC--CCEEEEEeCCCeEEEEECCCCcEE---EEee-ecCcEEEEEEecC------
Q 043172 336 VKAKADKIGPLVGREEKSLEFFEVSPD--SSVIAFVGNEGYILLVSSKTKELI---GTLK-MNGTVRSLAFADD------ 403 (564)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~v~~~~~spd--g~~la~~~~dg~I~lwd~~t~~~~---~~~~-~~~~V~~l~~spd------ 403 (564)
.++.......+.+|.. .|.+++|+|+ +.+|++++.|+.|++|++.++... ..+. |...|.+++|+|+
T Consensus 89 ~~~~~~~~~~~~~h~~-~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 167 (316)
T 3bg1_A 89 ENGTWEKSHEHAGHDS-SVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL 167 (316)
T ss_dssp SSSCCCEEEEECCCSS-CCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred CCCcceEEEEccCCCC-ceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence 9875444445566665 7999999998 889999999999999999876422 2222 7788999999997
Q ss_pred -----------CCEEEEEeCCCeEEEEECCCC---ceeEEEeecCCcceEEEEECCCC----CEEEEEeCCCcEEEEeCC
Q 043172 404 -----------GKQLLSSGGDGQVYHWDLRTR---TCIHRAVDEGCINGTALCTSPDG----TFFAAGSDSGIVNVYNRQ 465 (564)
Q Consensus 404 -----------g~~l~s~s~dg~V~lwD~~~~---~~~~~~~~~~~~~i~~l~~sp~g----~~lasgs~dg~V~iwd~~ 465 (564)
+++|++++.|+.|++||++.. .++..+. .|...|.+++|+|++ .+||+|+.||+|+||++.
T Consensus 168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~-~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~ 246 (316)
T 3bg1_A 168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLE-AHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCD 246 (316)
T ss_dssp ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCB-CCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECS
T ss_pred cccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecc-cCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEcc
Confidence 468999999999999999755 2444444 345579999999986 799999999999999987
Q ss_pred cccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcC
Q 043172 466 EFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIP 514 (564)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~ 514 (564)
..... ......+..|...|.+++|+|++++|++++. |+.|+||+..
T Consensus 247 ~~~~~-~~~~~~~~~~~~~v~~v~~sp~g~~las~~~--D~~v~lw~~~ 292 (316)
T 3bg1_A 247 DASSN-TWSPKLLHKFNDVVWHVSWSITANILAVSGG--DNKVTLWKES 292 (316)
T ss_dssp STTCC-CCBCCEEEECSSCEEEEEECTTTCCEEEEES--SSCEEEEEEC
T ss_pred Ccccc-chhhhhhhcCCCcEEEEEEcCCCCEEEEEcC--CCeEEEEEEC
Confidence 63100 1122344567889999999999999999998 9999999975
No 68
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=8.4e-34 Score=284.36 Aligned_cols=282 Identities=16% Similarity=0.175 Sum_probs=227.5
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeee
Q 043172 264 PINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKI 343 (564)
Q Consensus 264 ~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~ 343 (564)
.+++|+||+++ +|++| .|++|+|||+..+....+..++.|...|.+++|+|++++|++|+.|+.|++|++.+++...
T Consensus 27 y~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~- 103 (318)
T 4ggc_A 27 YLNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR- 103 (318)
T ss_dssp TCBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-
T ss_pred cceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEE-
Confidence 35789999986 67665 5999999999855433333445677889999999999999999999999999999998744
Q ss_pred ccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-EEEEee-ecCcEEEEEEecCCCEEEEEeCCCeEEEEEC
Q 043172 344 GPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKE-LIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQVYHWDL 421 (564)
Q Consensus 344 ~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~-~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~ 421 (564)
.+.+|.. .+. ++++++.++++++.++.+.+|+..+.. .+..+. |...+..+.|++++++|++++.||.|++||+
T Consensus 104 -~~~~h~~-~~~--~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~ 179 (318)
T 4ggc_A 104 -NMTSHSA-RVG--SLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS 179 (318)
T ss_dssp -EEECCSS-CEE--EEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEES
T ss_pred -EecCccc-eEE--EeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEEC
Confidence 3556554 444 455667899999999999999998764 444444 8899999999999999999999999999999
Q ss_pred CCCceeE---EEeecCCcceEEEEECCCCCE---EEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCc
Q 043172 422 RTRTCIH---RAVDEGCINGTALCTSPDGTF---FAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQ 495 (564)
Q Consensus 422 ~~~~~~~---~~~~~~~~~i~~l~~sp~g~~---lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~ 495 (564)
++++... .....+...+.+++++|.+.. +++|+.++.|++|+.... .... ...+...+..+.|+|++.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~-----~~~~-~~~~~~~v~~~~~~~~~~ 253 (318)
T 4ggc_A 180 APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG-----ACLS-AVDAHSQVCSILWSPHYK 253 (318)
T ss_dssp SCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTC-----CEEE-EEECSSCEEEEEEETTTT
T ss_pred CCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccc-----cccc-cccceeeeeeeeeccccc
Confidence 8765422 122234446889999987653 346678899999999875 3333 344677899999999999
Q ss_pred EEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCCC
Q 043172 496 ILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNHY 561 (564)
Q Consensus 496 ~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~~ 561 (564)
.++++++..|+.|+|||+.+++.+..+. +|.+.|++++|+|+|++||+|+.||+|+||++...
T Consensus 254 ~~~~~sg~~d~~i~iwd~~~~~~~~~l~---gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 254 ELISGHGFAQNQLVIWKYPTMAKVAELK---GHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp EEEEEECTTTCCEEEEETTTCCEEEEEC---CCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred ceEEEEEcCCCEEEEEECCCCcEEEEEc---CCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 9998886569999999999999888664 46689999999999999999999999999999754
No 69
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.2e-33 Score=296.69 Aligned_cols=282 Identities=15% Similarity=0.185 Sum_probs=232.3
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceee
Q 043172 263 GPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADK 342 (564)
Q Consensus 263 ~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~ 342 (564)
--++.|+||++ ++|++|. |++|+|||+.++....+..+..|...|++++|+|+|++|++|+.|+.|++||+.+++...
T Consensus 106 ~y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~ 183 (420)
T 4gga_A 106 YYLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 183 (420)
T ss_dssp TTCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred ccceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEE
Confidence 35788999986 4777764 999999999865433444445677889999999999999999999999999999998744
Q ss_pred eccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-EEEEee-ecCcEEEEEEecCCCEEEEEeCCCeEEEEE
Q 043172 343 IGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKE-LIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQVYHWD 420 (564)
Q Consensus 343 ~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~-~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~V~lwD 420 (564)
.+.+|.. .+.++.+ ++.+|++++.++.+.+|+..... .+..+. |...+..+.|+|+++++++++.|+.|++|+
T Consensus 184 --~~~~h~~-~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~ 258 (420)
T 4gga_A 184 --NMTSHSA-RVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWP 258 (420)
T ss_dssp --EECCCSS-CEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred --EEeCCCC-ceEEEee--CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEe
Confidence 4556654 5766665 57899999999999999998654 445555 889999999999999999999999999999
Q ss_pred CCCCce----eEEEeecCCcceEEEEECCCCC-EEEE--EeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCC
Q 043172 421 LRTRTC----IHRAVDEGCINGTALCTSPDGT-FFAA--GSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNND 493 (564)
Q Consensus 421 ~~~~~~----~~~~~~~~~~~i~~l~~sp~g~-~las--gs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspd 493 (564)
+.+++. +... ..+...|.+++|+|.+. ++++ |+.|+.|+|||+.++ .++..+.. ...+.++.|+|+
T Consensus 259 ~~~~~~~~~~~~~~-~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~-----~~~~~~~~-~~~v~~~~~~~~ 331 (420)
T 4gga_A 259 SAPGEGGWVPLQTF-TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG-----ACLSAVDA-HSQVCSILWSPH 331 (420)
T ss_dssp SSCCSSCSCCSEEE-CCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT-----EEEEEEEC-SSCEEEEEEETT
T ss_pred eccccccceeeeee-cccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc-----ccceeecc-ccceeeeeecCC
Confidence 987653 2233 34455789999999765 5555 457999999999987 77777764 467889999999
Q ss_pred CcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCCC
Q 043172 494 AQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNHY 561 (564)
Q Consensus 494 g~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~~ 561 (564)
+..|+++++..|+.|+||++++++.+..+. +|.+.|++++|+|+|.+||+|+.||+|+||++...
T Consensus 332 ~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~---gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~ 396 (420)
T 4gga_A 332 YKELISGHGFAQNQLVIWKYPTMAKVAELK---GHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 396 (420)
T ss_dssp TTEEEEEECTTTCCEEEEETTTCCEEEEEC---CCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCS
T ss_pred CCeEEEEEecCCCEEEEEECCCCcEEEEEc---CCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 999999886558999999999999887664 46689999999999999999999999999998653
No 70
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=4.4e-34 Score=288.50 Aligned_cols=295 Identities=14% Similarity=0.134 Sum_probs=213.8
Q ss_pred CCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCC--ceeEEEEeCCcCeEEEEEee--CCCEEEEEeCCCeEEEE
Q 043172 258 DESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRN--TKIQSIFLEDCPVRKASFLP--DGSQAIIAGRRKFFYSL 333 (564)
Q Consensus 258 ~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~--~~~~~~~~~~~~I~~l~fsp--dg~~l~s~~~dg~i~iw 333 (564)
..+|.++|++|+|+|++++|++|+.||.|+||++..... ..+..+..|..+|.+++|+| ++++|++++.|+.|++|
T Consensus 7 ~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vw 86 (351)
T 3f3f_A 7 DSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLW 86 (351)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEE
T ss_pred CcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEE
Confidence 357999999999999999999999999999999985432 35667788999999999999 69999999999999999
Q ss_pred ECCCCce-------eeeccccccCCcceEEEEEcCC--CCEEEEEeCCCeEEEEECCCCcEEEEe--------------e
Q 043172 334 DLVKAKA-------DKIGPLVGREEKSLEFFEVSPD--SSVIAFVGNEGYILLVSSKTKELIGTL--------------K 390 (564)
Q Consensus 334 dl~~~~~-------~~~~~~~~~~~~~v~~~~~spd--g~~la~~~~dg~I~lwd~~t~~~~~~~--------------~ 390 (564)
|+.++.. ..+..+.+|.. .|.+++|+|+ +.+|++++.+|.|++||+.+++.+..+ .
T Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (351)
T 3f3f_A 87 EEDPDQEECSGRRWNKLCTLNDSKG-SLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPAN 165 (351)
T ss_dssp EECTTSCTTSSCSEEEEEEECCCSS-CEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSS
T ss_pred ecCCCcccccccCcceeeeecccCC-ceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCC
Confidence 9988742 22334455554 7999999999 999999999999999999887644322 2
Q ss_pred ecCcEEEEEEecC---CCEEEEEeCCCeEEEEECCCCce--eEEEeecCCcceEEEEECCCC----CEEEEEeCCCcEEE
Q 043172 391 MNGTVRSLAFADD---GKQLLSSGGDGQVYHWDLRTRTC--IHRAVDEGCINGTALCTSPDG----TFFAAGSDSGIVNV 461 (564)
Q Consensus 391 ~~~~V~~l~~spd---g~~l~s~s~dg~V~lwD~~~~~~--~~~~~~~~~~~i~~l~~sp~g----~~lasgs~dg~V~i 461 (564)
+...+.+++|+|+ +.+|++++.++.+.+|+...+.. +..+. .+...|++++|+|++ ++|++|+.||.|++
T Consensus 166 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i 244 (351)
T 3f3f_A 166 HLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLP-GHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI 244 (351)
T ss_dssp CSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECC-CCCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred cccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecC-CCCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence 5568999999997 89999999999998888887765 33333 345579999999998 89999999999999
Q ss_pred EeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecC--CCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeC
Q 043172 462 YNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTM--KKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSP 539 (564)
Q Consensus 462 wd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~--~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fsp 539 (564)
||+... ........+...+....+++....++.+... ....+.+|+......+..+ ..|...|++++|+|
T Consensus 245 wd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~~~~~s~ 316 (351)
T 3f3f_A 245 FKITEK-----LSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEH---DDHNGEVWSVSWNL 316 (351)
T ss_dssp EEEEEC-----C---------------------------------------CCSEEEEEEEEE---CTTSSCEEEEEECS
T ss_pred EeCCCC-----cCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEE---ecccccEEEEEEcC
Confidence 999875 3333333333444444555555444444321 0234445554444444433 44668899999999
Q ss_pred CCCEEEEEcCCCeEEEEEcCCCC
Q 043172 540 GGGFMAVGNAAGKVFLYKLNHYH 562 (564)
Q Consensus 540 dg~~Lasgs~dG~V~lw~l~~~~ 562 (564)
++++|++|+.||.|+||++...+
T Consensus 317 ~~~~l~s~~~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 317 TGTILSSAGDDGKVRLWKATYSN 339 (351)
T ss_dssp SSCCEEEEETTSCEEEEEECTTS
T ss_pred CCCEEEEecCCCcEEEEecCcCc
Confidence 99999999999999999998654
No 71
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=3.8e-33 Score=296.03 Aligned_cols=310 Identities=14% Similarity=0.187 Sum_probs=251.4
Q ss_pred cccCCCeEEcCCCccCCCeeeeeeeecccCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCc
Q 043172 228 LRTDEDLVVKSSAKLSPGLLEYSRLIDANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDC 307 (564)
Q Consensus 228 l~~~~~~~~~~~~~l~~~~~d~~rl~~~~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~ 307 (564)
+...+.++++++..-...+|++..........+|.++|++++|+|++ +|++|+.||+|++|++.. ...+..+.+|..
T Consensus 128 ~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~--~~~~~~~~~h~~ 204 (464)
T 3v7d_B 128 LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKK--GCCTHVFEGHNS 204 (464)
T ss_dssp EEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTT--TEEEEEECCCSS
T ss_pred EEECCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCC--CcEEEEECCCCC
Confidence 33345566666666666777776555555567899999999999988 999999999999999974 457788889999
Q ss_pred CeEEEEEee--CCCEEEEEeCCCeEEEEECCCCceee---------------------eccccccCCcceEEEEEcCCCC
Q 043172 308 PVRKASFLP--DGSQAIIAGRRKFFYSLDLVKAKADK---------------------IGPLVGREEKSLEFFEVSPDSS 364 (564)
Q Consensus 308 ~I~~l~fsp--dg~~l~s~~~dg~i~iwdl~~~~~~~---------------------~~~~~~~~~~~v~~~~~spdg~ 364 (564)
+|.+++|++ ++.+|++++.++.|++||+.++.... +..+.+|.. .+.++ +++++
T Consensus 205 ~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~--~~~~~ 281 (464)
T 3v7d_B 205 TVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA-SVRTV--SGHGN 281 (464)
T ss_dssp CEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSS-CEEEE--EEETT
T ss_pred ccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccc-eEEEE--cCCCC
Confidence 999999994 77899999999999999998875321 112334433 45544 78899
Q ss_pred EEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEE
Q 043172 365 VIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCT 443 (564)
Q Consensus 365 ~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~ 443 (564)
++++++.+|.|++||+.+++.+..+. |...|.+++|+|++++|++++.||.|++||+.+++++..+..+. ..+.+++|
T Consensus 282 ~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~-~~v~~~~~ 360 (464)
T 3v7d_B 282 IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHT-ALVGLLRL 360 (464)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCS-SCEEEEEE
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCC-CcEEEEEE
Confidence 99999999999999999999998887 88999999999999999999999999999999999988887554 47899999
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCC
Q 043172 444 SPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWP 523 (564)
Q Consensus 444 sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~ 523 (564)
+ +.+|++|+.||.|++||+... ...... .+...+..++|+|++++|++++ ++.|++|++.+++.+..+.
T Consensus 361 ~--~~~l~s~s~dg~v~vwd~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~l~~~~---dg~i~iwd~~~g~~~~~~~ 429 (464)
T 3v7d_B 361 S--DKFLVSAAADGSIRGWDANDY-----SRKFSY-HHTNLSAITTFYVSDNILVSGS---ENQFNIYNLRSGKLVHANI 429 (464)
T ss_dssp C--SSEEEEEETTSEEEEEETTTC-----CEEEEE-ECTTCCCEEEEEECSSEEEEEE---TTEEEEEETTTCCEEESCT
T ss_pred c--CCEEEEEeCCCcEEEEECCCC-----ceeeee-cCCCCccEEEEEeCCCEEEEec---CCeEEEEECCCCcEEehhh
Confidence 7 579999999999999999875 444443 3567788899999999999887 6899999999999887532
Q ss_pred CCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEc
Q 043172 524 PANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKL 558 (564)
Q Consensus 524 ~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l 558 (564)
..+.+.|++++|+ +..++++++.+|.+.+|-+
T Consensus 430 --~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 430 --LKDADQIWSVNFK-GKTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp --TTTCSEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred --ccCCCcEEEEEec-CCEEEEEEEeCCeEEEEEe
Confidence 2345789999998 3455666677776665543
No 72
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.5e-33 Score=308.82 Aligned_cols=290 Identities=10% Similarity=0.126 Sum_probs=249.5
Q ss_pred CCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCC--CceeEEEEeCCcC-eEEEEEee--CCCEEEEEeCCCeEEE
Q 043172 258 DESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKR--NTKIQSIFLEDCP-VRKASFLP--DGSQAIIAGRRKFFYS 332 (564)
Q Consensus 258 ~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~--~~~~~~~~~~~~~-I~~l~fsp--dg~~l~s~~~dg~i~i 332 (564)
..+|.+.|++++|+|++++|++++ ++.|+||++.... ...+..+.+|..+ |.+++|+| ++++|++++.++.|++
T Consensus 14 ~~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~v 92 (615)
T 1pgu_A 14 PSTQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIV 92 (615)
T ss_dssp CCCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEE
T ss_pred CCCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEE
Confidence 346899999999999999999998 8899999997430 0577888999999 99999999 9999999999999999
Q ss_pred EECCCC------ceeeeccccccCCcceEEEEEcCCCCEEEEEeCC----CeEEEEECCCCcEEEEee-ecCcEEEEEEe
Q 043172 333 LDLVKA------KADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNE----GYILLVSSKTKELIGTLK-MNGTVRSLAFA 401 (564)
Q Consensus 333 wdl~~~------~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d----g~I~lwd~~t~~~~~~~~-~~~~V~~l~~s 401 (564)
|++.++ .......+..+.. .|.+++|+|++++|++++.+ +.|.+|+ +++.+..+. |...|.+++|+
T Consensus 93 w~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~ 169 (615)
T 1pgu_A 93 WGWTFDKESNSVEVNVKSEFQVLAG-PISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLK 169 (615)
T ss_dssp EEEEEEGGGTEEEEEEEEEEECCSS-CEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEEC
T ss_pred EeCCCCcccccccccccchhhcccc-cEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEEC
Confidence 999765 3333444555554 79999999999999999987 7898988 566777776 88999999999
Q ss_pred cCCC-EEEEEeCCCeEEEEECCCCceeEEEeecCC--cceEEEEECCC-CCEEEEEeCCCcEEEEeCCcccCCcceeeEE
Q 043172 402 DDGK-QLLSSGGDGQVYHWDLRTRTCIHRAVDEGC--INGTALCTSPD-GTFFAAGSDSGIVNVYNRQEFLGGKRKPIKT 477 (564)
Q Consensus 402 pdg~-~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~--~~i~~l~~sp~-g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~ 477 (564)
|++. .|++++.|+.|++||+.+++++..+..+.. ..+++++|+|+ +++|++|+.+|.|++||+..+ +++..
T Consensus 170 ~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-----~~~~~ 244 (615)
T 1pgu_A 170 QSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG-----EFLKY 244 (615)
T ss_dssp SSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC-----CEEEE
T ss_pred CCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCC-----CEeEE
Confidence 9997 899999999999999999988887765432 16899999999 999999999999999999887 78888
Q ss_pred c-c---ccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCC-CCCCCCcEEEEEeCCCCEEEEEcCCCe
Q 043172 478 I-E---NLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPA-NRNLQYPRCLDFSPGGGFMAVGNAAGK 552 (564)
Q Consensus 478 ~-~---~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~-~~~~~~V~~l~fspdg~~Lasgs~dG~ 552 (564)
+ . .|...|.+++|+ ++++|++++. ++.|++|++.++.....+... ......+.++.|+ ++.+|++|+.+|.
T Consensus 245 ~~~~~~~~~~~v~~~~~~-~~~~l~~~~~--d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~ 320 (615)
T 1pgu_A 245 IEDDQEPVQGGIFALSWL-DSQKFATVGA--DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGT 320 (615)
T ss_dssp CCBTTBCCCSCEEEEEES-SSSEEEEEET--TSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSC
T ss_pred ecccccccCCceEEEEEc-CCCEEEEEcC--CCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCC
Confidence 8 5 899999999999 9999999998 899999999998887766554 2223567888886 8899999999999
Q ss_pred EEEEEcCC
Q 043172 553 VFLYKLNH 560 (564)
Q Consensus 553 V~lw~l~~ 560 (564)
|++|++.+
T Consensus 321 i~~~d~~~ 328 (615)
T 1pgu_A 321 LNFYELGH 328 (615)
T ss_dssp EEEEETTE
T ss_pred EEEEECCC
Confidence 99999864
No 73
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2.4e-33 Score=318.31 Aligned_cols=319 Identities=16% Similarity=0.197 Sum_probs=257.8
Q ss_pred cccCCCeEEcCCCccCCCeeeeeeeecccCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCc
Q 043172 228 LRTDEDLVVKSSAKLSPGLLEYSRLIDANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDC 307 (564)
Q Consensus 228 l~~~~~~~~~~~~~l~~~~~d~~rl~~~~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~ 307 (564)
+.+.+.+++.+...-...+|+...........+|.++|++++|+|++++|++|+.||.|++|++.. ...+..+..|..
T Consensus 21 ~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~--~~~~~~~~~~~~ 98 (814)
T 3mkq_A 21 FHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT--GEKVVDFEAHPD 98 (814)
T ss_dssp ECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT--CCEEEEEECCSS
T ss_pred ECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCC--CcEEEEEecCCC
Confidence 444556665544443444566543333344557999999999999999999999999999999874 457788889999
Q ss_pred CeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEE
Q 043172 308 PVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSP-DSSVIAFVGNEGYILLVSSKTKELI 386 (564)
Q Consensus 308 ~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~la~~~~dg~I~lwd~~t~~~~ 386 (564)
+|.+++|+|++++|++++.++.|++|++.++... ...+.+|.. .|.+++|+| ++.+|++++.+|.|++||+.++...
T Consensus 99 ~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~-~~~~~~~~~-~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~ 176 (814)
T 3mkq_A 99 YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL-EQTFEGHEH-FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN 176 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEE-EEEEECCSS-CEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCS
T ss_pred CEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceE-EEEEcCCCC-cEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcce
Confidence 9999999999999999999999999999887321 223445544 799999999 8899999999999999999988877
Q ss_pred EEee--ecCcEEEEEEec--CCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEE
Q 043172 387 GTLK--MNGTVRSLAFAD--DGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVY 462 (564)
Q Consensus 387 ~~~~--~~~~V~~l~~sp--dg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iw 462 (564)
..+. +...+.+++|+| ++.+|++++.+|.|++||+.+++++..+..+. ..+++++|+|++++|++|+.||.|++|
T Consensus 177 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~v~vw 255 (814)
T 3mkq_A 177 FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM-SNVSFAVFHPTLPIIISGSEDGTLKIW 255 (814)
T ss_dssp EEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCS-SCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred eEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCC-CCEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 7666 448899999999 99999999999999999999999888776544 478999999999999999999999999
Q ss_pred eCCcccCCcceeeEEccccccceeEEEEcCCCc--EEEEEecCCCCeEEEEEcCCCceeccCC-----------------
Q 043172 463 NRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQ--ILAICSTMKKNSLKLIHIPSYNVFSNWP----------------- 523 (564)
Q Consensus 463 d~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~--~La~~s~~~d~~I~lwdl~s~~~~~~~~----------------- 523 (564)
|+.++ +++..+..+...+.+++|+|+|. ++++++ ++.+.+|++........+.
T Consensus 256 d~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 327 (814)
T 3mkq_A 256 NSSTY-----KVEKTLNVGLERSWCIATHPTGRKNYIASGF---DNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASD 327 (814)
T ss_dssp ETTTC-----SEEEEECCSSSSEEEEEECTTCGGGEEEEEE---TTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTC
T ss_pred ECCCC-----cEEEEeecCCCcEEEEEEccCCCceEEEEEe---CCCEEEEEcCCCCceeEECCCCCEEEECccccccee
Confidence 99987 88889998999999999999997 455554 6788999875432111100
Q ss_pred -------------------C----CCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCC
Q 043172 524 -------------------P----ANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNH 560 (564)
Q Consensus 524 -------------------~----~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~ 560 (564)
. ...+...+++++|+|+|++|++++ +|.+.+|++..
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~ 386 (814)
T 3mkq_A 328 IFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALA 386 (814)
T ss_dssp EEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTT
T ss_pred eeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECcc
Confidence 0 011234578999999999999988 89999999754
No 74
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-33 Score=289.01 Aligned_cols=254 Identities=13% Similarity=0.184 Sum_probs=215.2
Q ss_pred CCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeC--CCEEEEEeCCCeEEEEE
Q 043172 257 ADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPD--GSQAIIAGRRKFFYSLD 334 (564)
Q Consensus 257 ~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspd--g~~l~s~~~dg~i~iwd 334 (564)
...+|.++|++++|+|++++|++|+.||.|+||++.......+..+..|..+|.+++|+|+ +++|++++.|+.|++||
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd 85 (379)
T 3jrp_A 6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 85 (379)
T ss_dssp CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEE
T ss_pred EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEE
Confidence 3457999999999999999999999999999999986666777888899999999999977 99999999999999999
Q ss_pred CCCCceeeeccccccCCcceEEEEEcCC--CCEEEEEeCCCeEEEEECCCCcE--EEEee-ecCcEEEEEEec-------
Q 043172 335 LVKAKADKIGPLVGREEKSLEFFEVSPD--SSVIAFVGNEGYILLVSSKTKEL--IGTLK-MNGTVRSLAFAD------- 402 (564)
Q Consensus 335 l~~~~~~~~~~~~~~~~~~v~~~~~spd--g~~la~~~~dg~I~lwd~~t~~~--~~~~~-~~~~V~~l~~sp------- 402 (564)
+.+++...+..+.+|.. .|.+++|+|+ +.+|++++.+|.|++||+.++.. ...+. |...|.+++|+|
T Consensus 86 ~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 164 (379)
T 3jrp_A 86 EENGRWSQIAVHAVHSA-SVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 164 (379)
T ss_dssp EETTEEEEEEEECCCSS-CEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-----
T ss_pred cCCCceeEeeeecCCCc-ceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccc
Confidence 99987545555655554 7999999999 99999999999999999988733 22333 888999999999
Q ss_pred ------CCCEEEEEeCCCeEEEEECCCCcee----EEEeecCCcceEEEEECCC---CCEEEEEeCCCcEEEEeCCcccC
Q 043172 403 ------DGKQLLSSGGDGQVYHWDLRTRTCI----HRAVDEGCINGTALCTSPD---GTFFAAGSDSGIVNVYNRQEFLG 469 (564)
Q Consensus 403 ------dg~~l~s~s~dg~V~lwD~~~~~~~----~~~~~~~~~~i~~l~~sp~---g~~lasgs~dg~V~iwd~~~~~~ 469 (564)
++.+|++++.||.|++||++++... ..+. .+...+.+++|+|+ +.+|++++.||.|+|||+.....
T Consensus 165 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~ 243 (379)
T 3jrp_A 165 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE-GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG 243 (379)
T ss_dssp -----CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEEC-CCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS
T ss_pred cccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEe-cccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCc
Confidence 6999999999999999999876532 3333 34557999999999 89999999999999999987511
Q ss_pred CcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcC
Q 043172 470 GKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIP 514 (564)
Q Consensus 470 ~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~ 514 (564)
.....+.....|...|++++|+|+|++|++++. |+.|++|++.
T Consensus 244 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--dg~i~iw~~~ 286 (379)
T 3jrp_A 244 PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG--DNKVTLWKEN 286 (379)
T ss_dssp CCEEEESSSSCCSSCEEEEEECSSSCCEEEEES--SSSEEEEEEE
T ss_pred cceeeeeccccCCCcEEEEEEcCCCCEEEEecC--CCcEEEEeCC
Confidence 111233334458899999999999999999998 9999999987
No 75
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.6e-34 Score=291.65 Aligned_cols=254 Identities=14% Similarity=0.135 Sum_probs=204.7
Q ss_pred EEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcC--CCCEEEEEeCCCeEEEE
Q 043172 301 SIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSP--DSSVIAFVGNEGYILLV 378 (564)
Q Consensus 301 ~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~sp--dg~~la~~~~dg~I~lw 378 (564)
.+.+|..+|++++|+|+|++|++++.|+.|++||+.++....+..+.+|.. .|.+++|+| ++++|++++.|+.|++|
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~-~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEG-PVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSS-CEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCc-cEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 346799999999999999999999999999999998876544556777765 799999986 48999999999999999
Q ss_pred ECCCCc--EEEEee-ecCcEEEEEEecC--CCEEEEEeCCCeEEEEECCCCcee--EEEeecCCcceEEEEECCC-----
Q 043172 379 SSKTKE--LIGTLK-MNGTVRSLAFADD--GKQLLSSGGDGQVYHWDLRTRTCI--HRAVDEGCINGTALCTSPD----- 446 (564)
Q Consensus 379 d~~t~~--~~~~~~-~~~~V~~l~~spd--g~~l~s~s~dg~V~lwD~~~~~~~--~~~~~~~~~~i~~l~~sp~----- 446 (564)
|+.++. .+..+. |...|.+++|+|+ +.+|++++.|+.|++||++.+... ......+...+.+++|+|+
T Consensus 87 d~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 166 (316)
T 3bg1_A 87 REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGS 166 (316)
T ss_dssp CCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC--
T ss_pred ECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcc
Confidence 999874 455555 8899999999997 789999999999999999876422 1222344557889999987
Q ss_pred ------------CCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCC----cEEEEEecCCCCeEEE
Q 043172 447 ------------GTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDA----QILAICSTMKKNSLKL 510 (564)
Q Consensus 447 ------------g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg----~~La~~s~~~d~~I~l 510 (564)
+++|++|+.|+.|+|||+... ....++..+.+|..+|.+++|+|++ .+|++++. |++|+|
T Consensus 167 ~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~--~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~--D~~v~i 242 (316)
T 3bg1_A 167 LIDHPSGQKPNYIKRFASGGCDNLIKLWKEEED--GQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQ--DGRVFI 242 (316)
T ss_dssp ----CCSCCCCCCCBEECCBTTSBCCEEEECTT--SCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEET--TCEEEE
T ss_pred ccccccccCccccceEEEecCCCeEEEEEeCCC--CccceeeecccCCCceEEEEecCCCCCCCceEEEEcC--CCeEEE
Confidence 478999999999999999643 2235677889999999999999987 88999998 999999
Q ss_pred EEcCCCceec-cCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q 043172 511 IHIPSYNVFS-NWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLN 559 (564)
Q Consensus 511 wdl~s~~~~~-~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~ 559 (564)
|++.+..... .......|...|++++|+|+|.+||+|+.||.|+||++.
T Consensus 243 w~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 243 WTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred EEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 9997632100 001112345789999999999999999999999999975
No 76
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-33 Score=323.40 Aligned_cols=320 Identities=8% Similarity=0.062 Sum_probs=234.3
Q ss_pred cccCCCeEEcCCCccCCCeeeeeeeecccCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCc
Q 043172 228 LRTDEDLVVKSSAKLSPGLLEYSRLIDANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDC 307 (564)
Q Consensus 228 l~~~~~~~~~~~~~l~~~~~d~~rl~~~~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~ 307 (564)
+...+.+++.++..-...+|+........ ...|..+|++|+|+| +++|++++.|++|+||++... ..+..+. |..
T Consensus 25 fspdg~~lAsgs~Dg~I~lw~~~~~~~~~-~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~--~~~~~~~-~~~ 99 (902)
T 2oaj_A 25 FDFTQNLLAIATVTGEVHIYGQQQVEVVI-KLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQ--KVLTTVF-VPG 99 (902)
T ss_dssp EETTTTEEEEEETTSEEEEECSTTCEEEE-ECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTC--SEEEEEE-CSS
T ss_pred ECCCCCEEEEEeCCCEEEEEeCCCcEEEE-EcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCC--cEEEEEc-CCC
Confidence 44455566655444444455543222211 134788999999999 889999999999999999753 4566664 668
Q ss_pred CeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeee---------ccccccCCcceEEEEEcCC-CCEEEEEeCCCeEEE
Q 043172 308 PVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKI---------GPLVGREEKSLEFFEVSPD-SSVIAFVGNEGYILL 377 (564)
Q Consensus 308 ~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~---------~~~~~~~~~~v~~~~~spd-g~~la~~~~dg~I~l 377 (564)
.|++++|+|++++|++|+.+|.|++||+.++..... ..+.+|.. .|.+++|+|+ +.+|++++.+|.| +
T Consensus 100 ~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~-~V~sl~~sp~~~~~l~~g~~dg~v-l 177 (902)
T 2oaj_A 100 KITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLS-PIVSIQWNPRDIGTVLISYEYVTL-T 177 (902)
T ss_dssp CEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCC-CCCEEEEETTEEEEEEEECSSCEE-E
T ss_pred CEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCC-CeEEEEEccCCCCEEEEEeCCCcE-E
Confidence 999999999999999999999999999998875311 22344444 7999999996 5789999999999 9
Q ss_pred EECCCCcEEEEee-e------------------cCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEee-----c
Q 043172 378 VSSKTKELIGTLK-M------------------NGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVD-----E 433 (564)
Q Consensus 378 wd~~t~~~~~~~~-~------------------~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~-----~ 433 (564)
||+++++.+..+. | ...|++++|+|+|.+|++++.||.|++||+++++++..... +
T Consensus 178 Wd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~ 257 (902)
T 2oaj_A 178 YSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEIN 257 (902)
T ss_dssp EETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTT
T ss_pred EECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccC
Confidence 9999999888776 3 36799999999999999999999999999999887653110 1
Q ss_pred ------------CCcceEEEEEC----CCC-CEEEEEeCC-----CcEEEEe----------------------------
Q 043172 434 ------------GCINGTALCTS----PDG-TFFAAGSDS-----GIVNVYN---------------------------- 463 (564)
Q Consensus 434 ------------~~~~i~~l~~s----p~g-~~lasgs~d-----g~V~iwd---------------------------- 463 (564)
+...|++++|+ |++ .+|++|+.+ ..+.+|+
T Consensus 258 ~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 337 (902)
T 2oaj_A 258 VPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIF 337 (902)
T ss_dssp SCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEE
T ss_pred CCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEE
Confidence 12357888884 432 456666443 2455554
Q ss_pred -------------------------------------------CCcccCCcceeeE------------------------
Q 043172 464 -------------------------------------------RQEFLGGKRKPIK------------------------ 476 (564)
Q Consensus 464 -------------------------------------------~~~~~~~~~~~~~------------------------ 476 (564)
+..+ .+..
T Consensus 338 ~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g-----~~~~~~~~~~~~l~~~~~~v~~~~~s~~ 412 (902)
T 2oaj_A 338 PLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSG-----IFTDKASLFPQNLSWLRPLATTSMAASV 412 (902)
T ss_dssp CCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTC-----CEECCGGGSCGGGTTBTTBEEEEEEEEE
T ss_pred ecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCC-----CcccccccCCCcccccCCCeeEEEEEEc
Confidence 3211 0000
Q ss_pred -----------------EccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceecc--CC------CCCCCCCC
Q 043172 477 -----------------TIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSN--WP------PANRNLQY 531 (564)
Q Consensus 477 -----------------~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~--~~------~~~~~~~~ 531 (564)
.+.+|...+.+++|+|++++|++|+. |++|++||+.++..... +. ....|...
T Consensus 413 ~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~--DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~ 490 (902)
T 2oaj_A 413 PNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHS--NGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELA 490 (902)
T ss_dssp EHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEET--TSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCC
T ss_pred CHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecC--CCcEEEEECCCccccCCceEEeechhhcCCCCCCc
Confidence 11233334445666899999999999 99999999988742110 00 01256688
Q ss_pred cEEEEEeCCCCEEEEEcCCCeEEEEEcCCC
Q 043172 532 PRCLDFSPGGGFMAVGNAAGKVFLYKLNHY 561 (564)
Q Consensus 532 V~~l~fspdg~~Lasgs~dG~V~lw~l~~~ 561 (564)
|++++|+|+|++||+|+.||+|+||++...
T Consensus 491 V~svafspdg~~LAsgs~DgtV~lwd~~~~ 520 (902)
T 2oaj_A 491 VDKISFAAETLELAVSIETGDVVLFKYEVN 520 (902)
T ss_dssp EEEEEEETTTTEEEEEETTSCEEEEEEEEC
T ss_pred eeEEEecCCCCeEEEEecCcEEEEEEecCc
Confidence 999999999999999999999999999754
No 77
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=9.6e-33 Score=291.73 Aligned_cols=279 Identities=15% Similarity=0.226 Sum_probs=242.7
Q ss_pred CCCCCCCCe-eEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEEC
Q 043172 257 ADESSTGPI-NSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDL 335 (564)
Q Consensus 257 ~~~~h~~~V-~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl 335 (564)
...+|.+.| +|+ ++++++|++|+.||+|++|++. +...+..+.+|..+|.+++|+ ++.|++++.|+.|++||+
T Consensus 113 ~l~~h~~~v~~~~--~~~g~~l~sg~~dg~i~vwd~~--~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~ 186 (445)
T 2ovr_B 113 VLKGHDDHVITCL--QFCGNRIVSGSDDNTLKVWSAV--TGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNA 186 (445)
T ss_dssp EEECSTTSCEEEE--EEETTEEEEEETTSCEEEEETT--TCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEET
T ss_pred EecccCCCcEEEE--EEcCCEEEEEECCCcEEEEECC--CCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEEC
Confidence 345688875 554 4568999999999999999987 445778888999999999997 679999999999999999
Q ss_pred CCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEeCCC
Q 043172 336 VKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGGDG 414 (564)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg 414 (564)
.+++... .+.+|.. .|.++.|+ ++++++++.||.|++||+.+++.+..+. |...|.+++| ++.+|++++.||
T Consensus 187 ~~~~~~~--~~~~h~~-~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg 259 (445)
T 2ovr_B 187 ETGECIH--TLYGHTS-TVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDF 259 (445)
T ss_dssp TTTEEEE--EECCCSS-CEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTS
T ss_pred CcCcEEE--EECCCCC-cEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCC
Confidence 9987643 4556655 79999985 6789999999999999999999998887 8899999999 688999999999
Q ss_pred eEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCC
Q 043172 415 QVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDA 494 (564)
Q Consensus 415 ~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg 494 (564)
.|++||+++++++..+..+. ..+.+++| ++.++++|+.||.|++||+.++ +++..+.+|...+.++.++ +
T Consensus 260 ~i~iwd~~~~~~~~~~~~~~-~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~-----~~~~~~~~~~~~v~~~~~~--~ 329 (445)
T 2ovr_B 260 MVKVWDPETETCLHTLQGHT-NRVYSLQF--DGIHVVSGSLDTSIRVWDVETG-----NCIHTLTGHQSLTSGMELK--D 329 (445)
T ss_dssp CEEEEEGGGTEEEEEECCCS-SCEEEEEE--CSSEEEEEETTSCEEEEETTTC-----CEEEEECCCCSCEEEEEEE--T
T ss_pred EEEEEECCCCcEeEEecCCC-CceEEEEE--CCCEEEEEeCCCeEEEEECCCC-----CEEEEEcCCcccEEEEEEe--C
Confidence 99999999999888877544 47888888 7889999999999999999987 8889999999999888874 6
Q ss_pred cEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCCCC
Q 043172 495 QILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNHYH 562 (564)
Q Consensus 495 ~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~~~ 562 (564)
.+|++++. |+.|++|++.++..+..+.....|...|++++|+ +.+|++|+.||.|++|++.+.+
T Consensus 330 ~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~ 393 (445)
T 2ovr_B 330 NILVSGNA--DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGE 393 (445)
T ss_dssp TEEEEEET--TSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCC
T ss_pred CEEEEEeC--CCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCc
Confidence 79999998 9999999999999888877766677899999996 5899999999999999998654
No 78
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=5.7e-33 Score=329.87 Aligned_cols=320 Identities=12% Similarity=0.143 Sum_probs=259.5
Q ss_pred cCCCeEEcCCCccCCCeeeeeeeecccCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCe
Q 043172 230 TDEDLVVKSSAKLSPGLLEYSRLIDANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPV 309 (564)
Q Consensus 230 ~~~~~~~~~~~~l~~~~~d~~rl~~~~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I 309 (564)
..+.+++.++..-...+|+...........+|.+.|++++|+|++++|++|+.|++|+||++.. ...+..+.+|..+|
T Consensus 625 ~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~--~~~~~~~~~~~~~v 702 (1249)
T 3sfz_A 625 QDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT--GKLVHTYDEHSEQV 702 (1249)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--CCEEEEEECCSSCE
T ss_pred CCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC--CceEEEEcCCCCcE
Confidence 3444444444444445555544444444568999999999999999999999999999999984 45788899999999
Q ss_pred EEEEEee--CCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE
Q 043172 310 RKASFLP--DGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIG 387 (564)
Q Consensus 310 ~~l~fsp--dg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~ 387 (564)
.+++|+| ++..+++++.++.|++||+.++.... .+.+|.. .|.+++|+|++++|++++.||.|++||+.+++...
T Consensus 703 ~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~--~~~~h~~-~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~ 779 (1249)
T 3sfz_A 703 NCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRN--TMFGHTN-SVNHCRFSPDDELLASCSADGTLRLWDVRSANERK 779 (1249)
T ss_dssp EEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEE--EECCCSS-CEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEE
T ss_pred EEEEEecCCCceEEEEEeCCCeEEEEECCCcchhh--eecCCCC-CEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccc
Confidence 9999999 55689999999999999999988644 3556655 79999999999999999999999999998765443
Q ss_pred Ee--------------------------------------------------------eecCcEEEEEEecCCCEEEEEe
Q 043172 388 TL--------------------------------------------------------KMNGTVRSLAFADDGKQLLSSG 411 (564)
Q Consensus 388 ~~--------------------------------------------------------~~~~~V~~l~~spdg~~l~s~s 411 (564)
.+ .|...|.+++|+|+++++++++
T Consensus 780 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~ 859 (1249)
T 3sfz_A 780 SINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIAL 859 (1249)
T ss_dssp EEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEEC
T ss_pred eecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEe
Confidence 32 1456788999999999999999
Q ss_pred CCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCccc-----------------------
Q 043172 412 GDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFL----------------------- 468 (564)
Q Consensus 412 ~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~----------------------- 468 (564)
.+|.|++||+.++..+..+..+. ..+++++|+|+|++|++++.||.|++|++....
T Consensus 860 ~dg~v~vwd~~~~~~~~~~~~h~-~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 938 (1249)
T 3sfz_A 860 SQYCVELWNIDSRLKVADCRGHL-SWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVL 938 (1249)
T ss_dssp SSSCEEEEETTTTEEEEEECCCS-SCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEE
T ss_pred CCCeEEEEEcCCCceeeecCCCc-cceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEE
Confidence 99999999999998887776544 478999999999999999999999999854210
Q ss_pred ---------------------------------------------------CCcceeeEEccccccceeEEEEcCCCcEE
Q 043172 469 ---------------------------------------------------GGKRKPIKTIENLTTKVDFMKFNNDAQIL 497 (564)
Q Consensus 469 ---------------------------------------------------~~~~~~~~~~~~~~~~I~~l~fspdg~~L 497 (564)
......+..+.+|...|++++|+|+|++|
T Consensus 939 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l 1018 (1249)
T 3sfz_A 939 AVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTL 1018 (1249)
T ss_dssp EEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCE
T ss_pred EecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEE
Confidence 00123445566788999999999999999
Q ss_pred EEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCCCC
Q 043172 498 AICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNHYH 562 (564)
Q Consensus 498 a~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~~~ 562 (564)
++++. |+.|++|++.++.... ...|...|.+++|+|++ .+++++.||.|++|++.+.+
T Consensus 1019 ~s~~~--dg~i~vwd~~~~~~~~----~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~ 1076 (1249)
T 3sfz_A 1019 ISSSE--DSVIQVWNWQTGDYVF----LQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGR 1076 (1249)
T ss_dssp EEECS--SSBEEEEETTTTEEEC----CBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTC
T ss_pred EEEcC--CCEEEEEECCCCceEE----EecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECCCCc
Confidence 99998 9999999999987764 23456889999999975 57788899999999997654
No 79
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-33 Score=321.02 Aligned_cols=323 Identities=15% Similarity=0.126 Sum_probs=232.0
Q ss_pred cCCCeEEcCCCccCCCeeeeeeeec----------c-cCCCCCCCCeeEEEEcCC-CCEEEEEeCCCcEEEEEecCCCCc
Q 043172 230 TDEDLVVKSSAKLSPGLLEYSRLID----------A-NADESSTGPINSVQFHRN-AQLLLVAGLDRRLRFFQIDGKRNT 297 (564)
Q Consensus 230 ~~~~~~~~~~~~l~~~~~d~~rl~~----------~-~~~~~h~~~V~~l~fspd-g~~l~s~s~dg~I~lwd~~~~~~~ 297 (564)
..+.+++.+...-....||+..... . ....+|.++|++|+|+|+ +.+|++|+.|++| |||+.. ..
T Consensus 108 p~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~--~~ 184 (902)
T 2oaj_A 108 ASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVE--NE 184 (902)
T ss_dssp TTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTT--TE
T ss_pred CCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCC--Cc
Confidence 3445555444444445565542111 1 345789999999999996 5789999999999 999974 34
Q ss_pred eeEEEEeC------------------CcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccc---ccc-------
Q 043172 298 KIQSIFLE------------------DCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPL---VGR------- 349 (564)
Q Consensus 298 ~~~~~~~~------------------~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~---~~~------- 349 (564)
.+..+..| ...|.+++|+|+|++|++++.|+.|++||+.+++......+ ..|
T Consensus 185 ~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~ 264 (902)
T 2oaj_A 185 IKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYI 264 (902)
T ss_dssp EEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCC
T ss_pred eEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCC
Confidence 55556544 46799999999999999999999999999998876543222 111
Q ss_pred -----CCcceEEEEEc----CCC-CEEEEEeC------------------------------------------------
Q 043172 350 -----EEKSLEFFEVS----PDS-SVIAFVGN------------------------------------------------ 371 (564)
Q Consensus 350 -----~~~~v~~~~~s----pdg-~~la~~~~------------------------------------------------ 371 (564)
+...|.+++|+ |++ .+|++|+.
T Consensus 265 ~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 344 (902)
T 2oaj_A 265 RDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVP 344 (902)
T ss_dssp CCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSC
T ss_pred CCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCc
Confidence 12357888884 332 34454433
Q ss_pred ----------------------------CCeEEEEECCCCcEEEE-------ee-ecCcEEEE-----------------
Q 043172 372 ----------------------------EGYILLVSSKTKELIGT-------LK-MNGTVRSL----------------- 398 (564)
Q Consensus 372 ----------------------------dg~I~lwd~~t~~~~~~-------~~-~~~~V~~l----------------- 398 (564)
+|.|++|++.++..... +. |...|+++
T Consensus 345 v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~ 424 (902)
T 2oaj_A 345 IVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAA 424 (902)
T ss_dssp EEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTT
T ss_pred eEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcc
Confidence 23444444443322211 00 12334444
Q ss_pred -----------------EEecCCCEEEEEeCCCeEEEEECCCCcee----EEEe------ecCCcceEEEEECCCCCEEE
Q 043172 399 -----------------AFADDGKQLLSSGGDGQVYHWDLRTRTCI----HRAV------DEGCINGTALCTSPDGTFFA 451 (564)
Q Consensus 399 -----------------~~spdg~~l~s~s~dg~V~lwD~~~~~~~----~~~~------~~~~~~i~~l~~sp~g~~la 451 (564)
+|+|++++|++|+.|++|++||+.++... .... ..+...|.+++|+|+|++||
T Consensus 425 ~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LA 504 (902)
T 2oaj_A 425 QNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELA 504 (902)
T ss_dssp BCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEE
T ss_pred cCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEE
Confidence 44688999999999999999999877421 1111 13455799999999999999
Q ss_pred EEeCCCcEEEEeCCcccC----------------------------------------CcceeeEEccccccceeEEEEc
Q 043172 452 AGSDSGIVNVYNRQEFLG----------------------------------------GKRKPIKTIENLTTKVDFMKFN 491 (564)
Q Consensus 452 sgs~dg~V~iwd~~~~~~----------------------------------------~~~~~~~~~~~~~~~I~~l~fs 491 (564)
+|+.||+|+||++..... ....++.++.+|..+|++|+||
T Consensus 505 sgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafS 584 (902)
T 2oaj_A 505 VSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNS 584 (902)
T ss_dssp EEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEEC
T ss_pred EEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEec
Confidence 999999999999976410 0013577888999999999999
Q ss_pred CCCcEEEEEecCCCCeEEEEEcCCCceec--cCCCCC-CCCCCcEEEEEe-----CCC---CEEEEEcCCCeEEEEEc
Q 043172 492 NDAQILAICSTMKKNSLKLIHIPSYNVFS--NWPPAN-RNLQYPRCLDFS-----PGG---GFMAVGNAAGKVFLYKL 558 (564)
Q Consensus 492 pdg~~La~~s~~~d~~I~lwdl~s~~~~~--~~~~~~-~~~~~V~~l~fs-----pdg---~~Lasgs~dG~V~lw~l 558 (564)
||| +||+|+. |++|+|||+.+..++. .+.... +|.+.|++++|| ||| .+|++|+.||+|++|++
T Consensus 585 pdG-~lAsgs~--D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 585 NIG-FVGIAYA--AGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp BTS-EEEEEET--TSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred CCc-EEEEEeC--CCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence 999 9999999 9999999998876643 222333 677899999999 885 89999999999999998
No 80
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=7.1e-33 Score=292.04 Aligned_cols=274 Identities=11% Similarity=0.152 Sum_probs=232.0
Q ss_pred CCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCC
Q 043172 259 ESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKA 338 (564)
Q Consensus 259 ~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~ 338 (564)
.+|...|+|++| ++++|++|+.||+|++|++. +...+..+.+|..+|.+++| ++++|++|+.||.|++||+.++
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~--~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~ 203 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKN--TLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTG 203 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESS--SCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSC
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCC--CCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCC
Confidence 457788999887 78999999999999999987 44577888899999999998 7889999999999999999999
Q ss_pred ceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE---EEee-ecCcEEEEEEecCCCEEEEEeCCC
Q 043172 339 KADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELI---GTLK-MNGTVRSLAFADDGKQLLSSGGDG 414 (564)
Q Consensus 339 ~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~---~~~~-~~~~V~~l~~spdg~~l~s~s~dg 414 (564)
+... .+.+|.. .|.+++|+ +.++++++.||.|++||+.++..+ ..+. |...|.+++| ++++|++++.||
T Consensus 204 ~~~~--~~~~h~~-~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg 276 (435)
T 1p22_A 204 EMLN--TLIHHCE-AVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDR 276 (435)
T ss_dssp CEEE--EECCCCS-CEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTS
T ss_pred cEEE--EEcCCCC-cEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCC
Confidence 8644 3555554 79999997 459999999999999999987755 3333 8889999999 688999999999
Q ss_pred eEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCC
Q 043172 415 QVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDA 494 (564)
Q Consensus 415 ~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg 494 (564)
.|++||+++++++..+..+. ..+.++++ ++.+|++|+.||.|++||+.++ .++.++.+|...|.+++| ++
T Consensus 277 ~i~vwd~~~~~~~~~~~~~~-~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~-----~~~~~~~~h~~~v~~~~~--~~ 346 (435)
T 1p22_A 277 TIKVWNTSTCEFVRTLNGHK-RGIACLQY--RDRLVVSGSSDNTIRLWDIECG-----ACLRVLEGHEELVRCIRF--DN 346 (435)
T ss_dssp EEEEEETTTCCEEEEEECCS-SCEEEEEE--ETTEEEEEETTSCEEEEETTTC-----CEEEEECCCSSCEEEEEC--CS
T ss_pred eEEEEECCcCcEEEEEcCCC-CcEEEEEe--CCCEEEEEeCCCeEEEEECCCC-----CEEEEEeCCcCcEEEEEe--cC
Confidence 99999999999988887544 46888888 4679999999999999999987 889999999999999999 78
Q ss_pred cEEEEEecCCCCeEEEEEcCCCc---------eeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCCCC
Q 043172 495 QILAICSTMKKNSLKLIHIPSYN---------VFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNHYH 562 (564)
Q Consensus 495 ~~La~~s~~~d~~I~lwdl~s~~---------~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~~~ 562 (564)
.+|++|+. ||.|++|++.++. ....+ ..|.+.|++++| ++.+|++|+.||.|++|++....
T Consensus 347 ~~l~sg~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~---~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 347 KRIVSGAY--DGKIKVWDLVAALDPRAPAGTLCLRTL---VEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDP 416 (435)
T ss_dssp SEEEEEET--TSCEEEEEHHHHTSTTSCTTTTEEEEE---CCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-----
T ss_pred CEEEEEeC--CCcEEEEECCCCCCccccccchheeec---cCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCC
Confidence 89999998 9999999997654 33332 346688999999 78899999999999999997643
No 81
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=7.6e-34 Score=296.08 Aligned_cols=288 Identities=15% Similarity=0.205 Sum_probs=234.3
Q ss_pred CeeEEEEcCCCCEEE-EEeCCCcEEEEEecCCCC--ceeEEEEeCCcCeEEEEEee-CCCEEEEEeCCCeEEEEECCCCc
Q 043172 264 PINSVQFHRNAQLLL-VAGLDRRLRFFQIDGKRN--TKIQSIFLEDCPVRKASFLP-DGSQAIIAGRRKFFYSLDLVKAK 339 (564)
Q Consensus 264 ~V~~l~fspdg~~l~-s~s~dg~I~lwd~~~~~~--~~~~~~~~~~~~I~~l~fsp-dg~~l~s~~~dg~i~iwdl~~~~ 339 (564)
....++++|+...++ +++.+|.|+||++..... ..+..+.+|..+|.+++|+| ++++|++++.|+.|++|++.++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 455689999876544 578899999999864211 24455678999999999999 99999999999999999999874
Q ss_pred e-----eeeccccccCCcceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEEEEe--e-ecCcEEEEEEecCCCEEEEE
Q 043172 340 A-----DKIGPLVGREEKSLEFFEVSPDS-SVIAFVGNEGYILLVSSKTKELIGTL--K-MNGTVRSLAFADDGKQLLSS 410 (564)
Q Consensus 340 ~-----~~~~~~~~~~~~~v~~~~~spdg-~~la~~~~dg~I~lwd~~t~~~~~~~--~-~~~~V~~l~~spdg~~l~s~ 410 (564)
. ..+..+.+|.. .|.+++|+|++ ++|++++.||.|++||+.+++.+..+ . |...|.+++|+|++++|+++
T Consensus 116 ~~~~~~~~~~~~~~h~~-~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 194 (402)
T 2aq5_A 116 LVLPLREPVITLEGHTK-RVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTS 194 (402)
T ss_dssp CSSCBCSCSEEEECCSS-CEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEE
T ss_pred CccccCCceEEecCCCC-eEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEE
Confidence 3 12334556654 79999999998 69999999999999999999999988 4 88999999999999999999
Q ss_pred eCCCeEEEEECCCCceeEEE-eecCCcceEEEEECCCCCEEEEE---eCCCcEEEEeCCcccCCcceeeEEc-cccccce
Q 043172 411 GGDGQVYHWDLRTRTCIHRA-VDEGCINGTALCTSPDGTFFAAG---SDSGIVNVYNRQEFLGGKRKPIKTI-ENLTTKV 485 (564)
Q Consensus 411 s~dg~V~lwD~~~~~~~~~~-~~~~~~~i~~l~~sp~g~~lasg---s~dg~V~iwd~~~~~~~~~~~~~~~-~~~~~~I 485 (564)
+.||.|++||+++++++..+ ..+....+.+++|+|++.+|++| +.++.|++||+... . .++... ..+...|
T Consensus 195 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~--~--~~~~~~~~~~~~~v 270 (402)
T 2aq5_A 195 CRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHL--E--EPLSLQELDTSSGV 270 (402)
T ss_dssp ETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBC--S--SCSEEEECCCCSSC
T ss_pred ecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccc--c--CCceEEeccCCCce
Confidence 99999999999999998887 44444457899999999999999 79999999999875 1 223332 2467789
Q ss_pred eEEEEcCCCcEEEEEecCCCCeEEEEEcCCCce-eccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCC
Q 043172 486 DFMKFNNDAQILAICSTMKKNSLKLIHIPSYNV-FSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNH 560 (564)
Q Consensus 486 ~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~-~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~ 560 (564)
.+++|+|++++|++++.. |+.|++|++.++.. +..+.... +...|++++|+|++.++++ .++.+++|++..
T Consensus 271 ~~~~~s~~~~~l~~~g~~-dg~i~i~d~~~~~~~~~~l~~~~-~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~ 342 (402)
T 2aq5_A 271 LLPFFDPDTNIVYLCGKG-DSSIRYFEITSEAPFLHYLSMFS-SKESQRGMGYMPKRGLEVN--KCEIARFYKLHE 342 (402)
T ss_dssp EEEEEETTTTEEEEEETT-CSCEEEEEECSSTTCEEEEEEEC-CSSCCSEEEECCGGGSCGG--GTEEEEEEEEET
T ss_pred eEEEEcCCCCEEEEEEcC-CCeEEEEEecCCCcceEeecccc-cCCcccceEEeccccccee--cceeEEEEEcCC
Confidence 999999999999765532 89999999998773 32222222 4578999999999998875 466999999865
No 82
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-32 Score=280.70 Aligned_cols=279 Identities=13% Similarity=0.156 Sum_probs=234.2
Q ss_pred cccCCCeEEcCCCccCCCeeeeeeeecccCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCc
Q 043172 228 LRTDEDLVVKSSAKLSPGLLEYSRLIDANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDC 307 (564)
Q Consensus 228 l~~~~~~~~~~~~~l~~~~~d~~rl~~~~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~ 307 (564)
+...+.+++.++..-...+|++..........+|.+.|++++|+|++++|++++.|+.|++|++... ..+..+. +..
T Consensus 40 ~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~-~~~ 116 (369)
T 3zwl_B 40 YNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNG--QCVATWK-SPV 116 (369)
T ss_dssp ECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTC--CEEEEEE-CSS
T ss_pred EcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--cEEEEee-cCC
Confidence 4445556665544545556666544444556789999999999999999999999999999999743 4556555 788
Q ss_pred CeEEEEEeeCCCEEEEEeCC-----CeEEEEECCCCceee---------eccccccCC-cceEEEEEcCCCCEEEEEeCC
Q 043172 308 PVRKASFLPDGSQAIIAGRR-----KFFYSLDLVKAKADK---------IGPLVGREE-KSLEFFEVSPDSSVIAFVGNE 372 (564)
Q Consensus 308 ~I~~l~fspdg~~l~s~~~d-----g~i~iwdl~~~~~~~---------~~~~~~~~~-~~v~~~~~spdg~~la~~~~d 372 (564)
+|.+++|+|++++|++++.+ +.|++|++..+.... ...+..+.. ..+.+++|+|++++|++++.+
T Consensus 117 ~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 196 (369)
T 3zwl_B 117 PVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKD 196 (369)
T ss_dssp CEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETT
T ss_pred CeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCC
Confidence 99999999999999999988 999999988764211 111122211 269999999999999999999
Q ss_pred CeEEEEECCC-CcEEEEee-ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEE
Q 043172 373 GYILLVSSKT-KELIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFF 450 (564)
Q Consensus 373 g~I~lwd~~t-~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l 450 (564)
|.|++||+.+ ++.+..+. |...|.+++|+|++++|++++.||.|++||+++++++..+. +...+.+++|+|+++++
T Consensus 197 g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~l 274 (369)
T 3zwl_B 197 GKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE--TDCPLNTAVITPLKEFI 274 (369)
T ss_dssp SEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--CSSCEEEEEECSSSSEE
T ss_pred CEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec--CCCCceeEEecCCCceE
Confidence 9999999998 77777777 88999999999999999999999999999999999888877 33468999999999999
Q ss_pred EEEeCCC--------------cEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCC
Q 043172 451 AAGSDSG--------------IVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSY 516 (564)
Q Consensus 451 asgs~dg--------------~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~ 516 (564)
++++.++ .+++||+... +++..+.+|...|++++|+|++++|++++. |+.|+||++..+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-----~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~--dg~v~iw~~~~~ 347 (369)
T 3zwl_B 275 ILGGGQEAKDVTTTSANEGKFEARFYHKIFE-----EEIGRVQGHFGPLNTVAISPQGTSYASGGE--DGFIRLHHFEKS 347 (369)
T ss_dssp EEEECCC-------------CEEEEEETTTC-----CEEEEEECCSSCEEEEEECTTSSEEEEEET--TSEEEEEEECHH
T ss_pred EEeecCCCceEEEEecCCCcceeEEEecCCC-----cchhheecccCcEEEEEECCCCCEEEEEcC--CCeEEEEECccc
Confidence 9999988 8999999887 888999999999999999999999999998 999999999865
Q ss_pred ce
Q 043172 517 NV 518 (564)
Q Consensus 517 ~~ 518 (564)
..
T Consensus 348 ~~ 349 (369)
T 3zwl_B 348 YF 349 (369)
T ss_dssp HH
T ss_pred cc
Confidence 43
No 83
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=8.3e-33 Score=309.12 Aligned_cols=244 Identities=18% Similarity=0.222 Sum_probs=208.6
Q ss_pred CCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCC
Q 043172 258 DESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVK 337 (564)
Q Consensus 258 ~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~ 337 (564)
..+|...|++++|+|++++|++|+.|++|+|||+. ....+..+.+|...|.+++|+|++++|++++.|+.|++||+..
T Consensus 426 ~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~--~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~ 503 (694)
T 3dm0_A 426 LTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLA--AGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLG 503 (694)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT--TTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS
T ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECC--CCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCC
Confidence 45799999999999999999999999999999987 4457788899999999999999999999999999999999876
Q ss_pred Cceeeeccc-cccCCcceEEEEEcCCC--CEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEeCC
Q 043172 338 AKADKIGPL-VGREEKSLEFFEVSPDS--SVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGGD 413 (564)
Q Consensus 338 ~~~~~~~~~-~~~~~~~v~~~~~spdg--~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~d 413 (564)
.....+... .+|. ..|.+++|+|++ .+|++++.|+.|++||+.+++....+. |.+.|++++|+|++++|++++.|
T Consensus 504 ~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~D 582 (694)
T 3dm0_A 504 ECKYTISEGGEGHR-DWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKD 582 (694)
T ss_dssp CEEEEECSSTTSCS-SCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred CcceeeccCCCCCC-CcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCC
Confidence 544333222 3344 479999999987 689999999999999999999988887 89999999999999999999999
Q ss_pred CeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEcccc------------
Q 043172 414 GQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENL------------ 481 (564)
Q Consensus 414 g~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~------------ 481 (564)
|.|++||+++++++..+..+ ..+.+++|+|++.+|++++. +.|+|||+.+. ..+..+..+
T Consensus 583 g~i~iwd~~~~~~~~~~~~~--~~v~~~~~sp~~~~l~~~~~-~~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~ 654 (694)
T 3dm0_A 583 GVVLLWDLAEGKKLYSLEAN--SVIHALCFSPNRYWLCAATE-HGIKIWDLESK-----SIVEDLKVDLKAEAEKADNSG 654 (694)
T ss_dssp SBCEEEETTTTEEEECCBCS--SCEEEEEECSSSSEEEEEET-TEEEEEETTTT-----EEEEEECCCCC----------
T ss_pred CeEEEEECCCCceEEEecCC--CcEEEEEEcCCCcEEEEEcC-CCEEEEECCCC-----CChhhhccccccccccccccc
Confidence 99999999999887766543 36899999999988887765 56999999886 555444321
Q ss_pred -------ccceeEEEEcCCCcEEEEEecCCCCeEEEEEcC
Q 043172 482 -------TTKVDFMKFNNDAQILAICSTMKKNSLKLIHIP 514 (564)
Q Consensus 482 -------~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~ 514 (564)
...+++++|+|+|++|++|+. ||.|+||++.
T Consensus 655 ~~~~~~~~~~~~~l~~spdg~~l~sgs~--Dg~i~iW~i~ 692 (694)
T 3dm0_A 655 PAATKRKVIYCTSLNWSADGSTLFSGYT--DGVIRVWGIG 692 (694)
T ss_dssp ------CCCCEEEEEECTTSSEEEEEET--TSEEEEEEC-
T ss_pred cccCCceeEEeeeEEEcCCCCEEEEEcC--CCeEEEEecc
Confidence 124789999999999999999 9999999985
No 84
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.3e-33 Score=284.13 Aligned_cols=258 Identities=16% Similarity=0.164 Sum_probs=215.1
Q ss_pred eeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCC--CCEEEEEeCCCeE
Q 043172 298 KIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPD--SSVIAFVGNEGYI 375 (564)
Q Consensus 298 ~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spd--g~~la~~~~dg~I 375 (564)
.+..+.+|..+|.+++|+|++++|++++.++.|++|++..+....+..+.+|.. .|.+++|+|+ +++|++++.||.|
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~l~s~~~dg~v 81 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEG-PVWRVDWAHPKFGTILASCSYDGKV 81 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSS-CEEEEEECCGGGCSEEEEEETTSCE
T ss_pred ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCC-cEEEEEeCCCCCCCEEEEeccCCEE
Confidence 445678899999999999999999999999999999998655544555666665 7999999987 9999999999999
Q ss_pred EEEECCCCc--EEEEee-ecCcEEEEEEecC--CCEEEEEeCCCeEEEEECCCCceeEE-EeecCCcceEEEEECC----
Q 043172 376 LLVSSKTKE--LIGTLK-MNGTVRSLAFADD--GKQLLSSGGDGQVYHWDLRTRTCIHR-AVDEGCINGTALCTSP---- 445 (564)
Q Consensus 376 ~lwd~~t~~--~~~~~~-~~~~V~~l~~spd--g~~l~s~s~dg~V~lwD~~~~~~~~~-~~~~~~~~i~~l~~sp---- 445 (564)
++||+.+++ .+..+. |...|.+++|+|+ +.+|++++.||.|++||+..+..... ....+...+.+++|+|
T Consensus 82 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 161 (379)
T 3jrp_A 82 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE 161 (379)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC--
T ss_pred EEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccc
Confidence 999999987 555555 8889999999999 99999999999999999998743322 2234556799999999
Q ss_pred ---------CCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCC---CcEEEEEecCCCCeEEEEEc
Q 043172 446 ---------DGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNND---AQILAICSTMKKNSLKLIHI 513 (564)
Q Consensus 446 ---------~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspd---g~~La~~s~~~d~~I~lwdl 513 (564)
++.+|++|+.||.|++||++... ....++..+..|...|++++|+|+ +.+|++++. |+.|++|++
T Consensus 162 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~--dg~i~iwd~ 238 (379)
T 3jrp_A 162 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDA-QTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ--DRTCIIWTQ 238 (379)
T ss_dssp --------CTTCEEEEEETTSCEEEEEEETTT-TEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET--TSCEEEEEE
T ss_pred ccccccCCCCCCEEEEEeCCCeEEEEEecCCC-cceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeC--CCEEEEEeC
Confidence 69999999999999999997641 122456678889999999999999 899999998 999999999
Q ss_pred CCCcee--ccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q 043172 514 PSYNVF--SNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLN 559 (564)
Q Consensus 514 ~s~~~~--~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~ 559 (564)
.++... ........+...|++++|+|+|.+|++++.||.|++|++.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 239 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp SSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred CCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence 886421 1112233456789999999999999999999999999986
No 85
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.1e-32 Score=285.62 Aligned_cols=276 Identities=13% Similarity=0.108 Sum_probs=227.7
Q ss_pred CeEEcCCCccCCCeeeeeeee------cccCCCCCCCCeeEEEEcCC----C---CEEEEEeCCCcEEEEEecCCCCc--
Q 043172 233 DLVVKSSAKLSPGLLEYSRLI------DANADESSTGPINSVQFHRN----A---QLLLVAGLDRRLRFFQIDGKRNT-- 297 (564)
Q Consensus 233 ~~~~~~~~~l~~~~~d~~rl~------~~~~~~~h~~~V~~l~fspd----g---~~l~s~s~dg~I~lwd~~~~~~~-- 297 (564)
.+++.++..-...+|++.... ......+|..+|++++|+|+ + .+|++++.|+.|++|++......
T Consensus 27 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 106 (397)
T 1sq9_A 27 SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKK 106 (397)
T ss_dssp SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCC
T ss_pred CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccccc
Confidence 455554445455566665433 33445579999999999999 9 99999999999999999854321
Q ss_pred -eeEEEEeC-----CcCeEEEEEe----eCCCE-EEEEeCCCeEEEEECCC------Cceeeec---ccc------ccCC
Q 043172 298 -KIQSIFLE-----DCPVRKASFL----PDGSQ-AIIAGRRKFFYSLDLVK------AKADKIG---PLV------GREE 351 (564)
Q Consensus 298 -~~~~~~~~-----~~~I~~l~fs----pdg~~-l~s~~~dg~i~iwdl~~------~~~~~~~---~~~------~~~~ 351 (564)
.+..+..| ...|.+++|+ |++++ |++++.++.|++||+.+ +...... .+. ..+.
T Consensus 107 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (397)
T 1sq9_A 107 VIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPS 186 (397)
T ss_dssp EEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSC
T ss_pred ccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCC
Confidence 16677777 5899999999 99999 99999999999999988 5432200 221 2233
Q ss_pred cceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeee-------cCcEEEEEEecCCCEEEEEeCC---CeEEEEEC
Q 043172 352 KSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLKM-------NGTVRSLAFADDGKQLLSSGGD---GQVYHWDL 421 (564)
Q Consensus 352 ~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~~-------~~~V~~l~~spdg~~l~s~s~d---g~V~lwD~ 421 (564)
..|.+++|+|++ +|++++.+|.|++||+++++.+..+.. ...|.+++|+|++++|++++.| |.|++||+
T Consensus 187 ~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~ 265 (397)
T 1sq9_A 187 QFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYET 265 (397)
T ss_dssp CCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEET
T ss_pred CCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEEC
Confidence 479999999999 999999999999999999999888874 8899999999999999999999 99999999
Q ss_pred CCCceeEEEeec------------CCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEcc------cc--
Q 043172 422 RTRTCIHRAVDE------------GCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIE------NL-- 481 (564)
Q Consensus 422 ~~~~~~~~~~~~------------~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~------~~-- 481 (564)
++++++..+... +...+.+++|+|++++|++|+.||.|+|||+... +++..+. .|
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~~~~ 340 (397)
T 1sq9_A 266 EFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK-----ERITTLNMHCDDIEIEE 340 (397)
T ss_dssp TTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT-----EEEEEEECCGGGCSSGG
T ss_pred CCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC-----ceeEEEecccCcccchh
Confidence 999988888751 4457899999999999999999999999999987 8888888 77
Q ss_pred -------------ccceeEEEEcCCC----------cEEEEEecCCCCeEEEEEcCCC
Q 043172 482 -------------TTKVDFMKFNNDA----------QILAICSTMKKNSLKLIHIPSY 516 (564)
Q Consensus 482 -------------~~~I~~l~fspdg----------~~La~~s~~~d~~I~lwdl~s~ 516 (564)
..+|++++|+|++ ++|++++. |+.|++|++.++
T Consensus 341 ~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~--dg~i~iw~~~~g 396 (397)
T 1sq9_A 341 DILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCL--DRSIRWFREAGG 396 (397)
T ss_dssp GCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEET--TTEEEEEEEEC-
T ss_pred hhhccccccccccCCceeEEEeccccccccccccccceEEEecC--CCcEEEEEcCCC
Confidence 8999999999998 79999998 999999999875
No 86
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-32 Score=288.65 Aligned_cols=285 Identities=9% Similarity=0.063 Sum_probs=225.1
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCC-ceeEEEE--------------------------------------
Q 043172 263 GPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRN-TKIQSIF-------------------------------------- 303 (564)
Q Consensus 263 ~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~-~~~~~~~-------------------------------------- 303 (564)
.+|++++|+|+|++|+++ .++.|++|++..+.. ..+..+.
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 589999999999976666 578999999875430 0222222
Q ss_pred ----------------eCCcCeEEEEEeeCCCEE-EEEeCCCeEEEEECC--CCceeeeccccccCCcceEEEEEcCCCC
Q 043172 304 ----------------LEDCPVRKASFLPDGSQA-IIAGRRKFFYSLDLV--KAKADKIGPLVGREEKSLEFFEVSPDSS 364 (564)
Q Consensus 304 ----------------~~~~~I~~l~fspdg~~l-~s~~~dg~i~iwdl~--~~~~~~~~~~~~~~~~~v~~~~~spdg~ 364 (564)
.|...|.+++|+|++++| ++++.++.|++|++. ++..........+. ..|.+++|+|+++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFS-KRPNAISIAEDDT 162 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECS-SCEEEEEECTTSS
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCC-CCceEEEEcCCCC
Confidence 233479999999999996 788899999999999 77654432222333 3799999999999
Q ss_pred EEEEEeCCCeEEEEECCCCcEEE----Eee-ecCcEEEEEEecC---CCEEEEEeCCCeEEEEECCCCceeEEEeecCCc
Q 043172 365 VIAFVGNEGYILLVSSKTKELIG----TLK-MNGTVRSLAFADD---GKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCI 436 (564)
Q Consensus 365 ~la~~~~dg~I~lwd~~t~~~~~----~~~-~~~~V~~l~~spd---g~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~ 436 (564)
+|++++.+|.|++|++.++.... .+. |...|++++|+|+ +++|++++.|+.|++||+.++.++..+...+..
T Consensus 163 ~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~ 242 (450)
T 2vdu_B 163 TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKH 242 (450)
T ss_dssp EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSS
T ss_pred EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCC
Confidence 99999999999999998876543 444 8899999999999 999999999999999999999988876655666
Q ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEcc-------------------------ccccceeEEEEc
Q 043172 437 NGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIE-------------------------NLTTKVDFMKFN 491 (564)
Q Consensus 437 ~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~-------------------------~~~~~I~~l~fs 491 (564)
.+.+++|+ ++++|++|+.|+.|+|||+.++ +++..+. .....|.+++|+
T Consensus 243 ~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~ 316 (450)
T 2vdu_B 243 FVSSICCG-KDYLLLSAGGDDKIFAWDWKTG-----KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKS 316 (450)
T ss_dssp CEEEEEEC-STTEEEEEESSSEEEEEETTTC-----CEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEEC
T ss_pred ceEEEEEC-CCCEEEEEeCCCeEEEEECCCC-----cEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEe
Confidence 89999999 9999999999999999999987 5555554 223578999999
Q ss_pred CCCcEEEEEecCCCCeEEEEEc--CCC---ceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcC------CCeEEEEEcCC
Q 043172 492 NDAQILAICSTMKKNSLKLIHI--PSY---NVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNA------AGKVFLYKLNH 560 (564)
Q Consensus 492 pdg~~La~~s~~~d~~I~lwdl--~s~---~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~------dG~V~lw~l~~ 560 (564)
|++++|++++.. ++.|+||++ .++ ..+..+.. + +.|.+++|+|++-++++++. +..|.+|.+..
T Consensus 317 ~~~~~l~~~~~~-d~~i~iw~~~~~~~~~l~~~~~~~~---~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 317 KNLPFVAFFVEA-TKCIIILEMSEKQKGDLALKQIITF---P-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp SSSSEEEEEETT-CSEEEEEEECSSSTTCEEEEEEEEC---S-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred CCCCEEEEEECC-CCeEEEEEeccCCCCceeeccEecc---C-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence 999999999832 899999999 555 44443333 3 77999999996544444443 45588888753
No 87
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.9e-31 Score=268.43 Aligned_cols=272 Identities=17% Similarity=0.202 Sum_probs=223.6
Q ss_pred CCeEEcCCCccCCCeeeeeeee-----cccCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCC
Q 043172 232 EDLVVKSSAKLSPGLLEYSRLI-----DANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLED 306 (564)
Q Consensus 232 ~~~~~~~~~~l~~~~~d~~rl~-----~~~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~ 306 (564)
++++++++.+-...+|++.... ......+|...|++++|+|++++|++|+.|+.|++|+... .........+.
T Consensus 51 ~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~--~~~~~~~~~~~ 128 (340)
T 4aow_A 51 PDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTT--GTTTRRFVGHT 128 (340)
T ss_dssp TTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--TEEEEEEECCS
T ss_pred CCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecc--cceeeeecCCC
Confidence 4566666666666777765321 2234578999999999999999999999999999999874 44566666778
Q ss_pred cCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCC--CEEEEEeCCCeEEEEECCCCc
Q 043172 307 CPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDS--SVIAFVGNEGYILLVSSKTKE 384 (564)
Q Consensus 307 ~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg--~~la~~~~dg~I~lwd~~t~~ 384 (564)
..+..+.+++++.+|++++.|+.+++||+...... .....+|.. .+..++|++++ .++++++.++.|++||+.+++
T Consensus 129 ~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~-~~~~~~~~~-~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~ 206 (340)
T 4aow_A 129 KDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKY-TVQDESHSE-WVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK 206 (340)
T ss_dssp SCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEE-EECSSSCSS-CEEEEEECSCSSSCEEEEEETTSCEEEEETTTTE
T ss_pred CceeEEEEeecCccceeecCCCeEEEEEeCCCceE-EEEeccccC-cccceEEccCCCCcEEEEEcCCCEEEEEECCCCc
Confidence 88999999999999999999999999999876543 233444444 78999998864 578899999999999999999
Q ss_pred EEEEee-ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEe
Q 043172 385 LIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYN 463 (564)
Q Consensus 385 ~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd 463 (564)
.+..+. |.+.|++++|+|++++|++++.||.|++||+++.+++..+..+. .+.+++|+|++.++ +++.++.|+|||
T Consensus 207 ~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~--~v~~~~~~~~~~~~-~~~~d~~i~iwd 283 (340)
T 4aow_A 207 LKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD--IINALCFSPNRYWL-CAATGPSIKIWD 283 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSS--CEEEEEECSSSSEE-EEEETTEEEEEE
T ss_pred eeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCc--eEEeeecCCCCcee-eccCCCEEEEEE
Confidence 988887 88999999999999999999999999999999999888776543 67899999987655 566789999999
Q ss_pred CCcccCCcceeeEE---------ccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCc
Q 043172 464 RQEFLGGKRKPIKT---------IENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYN 517 (564)
Q Consensus 464 ~~~~~~~~~~~~~~---------~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~ 517 (564)
+... ..+.. ...|...|++++|+|+|++|++|+. |+.|+||++.+|+
T Consensus 284 ~~~~-----~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~--Dg~v~iW~~~tGt 339 (340)
T 4aow_A 284 LEGK-----IIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYT--DNLVRVWQVTIGT 339 (340)
T ss_dssp TTTT-----EEEEEECCC-------CCCCCEEEEEECTTSSEEEEEET--TSCEEEEEEEC--
T ss_pred CCCC-----eEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeC--CCEEEEEeCCCcC
Confidence 9875 33333 3468889999999999999999998 9999999999875
No 88
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=3.6e-32 Score=278.75 Aligned_cols=252 Identities=13% Similarity=0.070 Sum_probs=216.4
Q ss_pred EEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 043172 302 IFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSK 381 (564)
Q Consensus 302 ~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~ 381 (564)
+..|..+|.+++|+|++++|++++.++.|++|++.+++...+..+.+|.. .|.+++|+|++++|++++.+|.|++||+.
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 82 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNG-QVTGVDWAPDSNRIVTCGTDRNAYVWTLK 82 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSS-CEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCC-cccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence 34588999999999999999999999999999999987444555666655 79999999999999999999999999999
Q ss_pred CCcEEEEee---ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCce---eEEEeecCCcceEEEEECCCCCEEEEEeC
Q 043172 382 TKELIGTLK---MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTC---IHRAVDEGCINGTALCTSPDGTFFAAGSD 455 (564)
Q Consensus 382 t~~~~~~~~---~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~---~~~~~~~~~~~i~~l~~sp~g~~lasgs~ 455 (564)
+++....+. |...|.+++|+|++++|++++.+|.|++||+..+.. ...+...+...+.+++|+|++++|++|+.
T Consensus 83 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 162 (372)
T 1k8k_C 83 GRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC 162 (372)
T ss_dssp TTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET
T ss_pred CCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcC
Confidence 988655543 788999999999999999999999999999998763 34444455668999999999999999999
Q ss_pred CCcEEEEeCCccc-------------CCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccC
Q 043172 456 SGIVNVYNRQEFL-------------GGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNW 522 (564)
Q Consensus 456 dg~V~iwd~~~~~-------------~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~ 522 (564)
+|.|++||+.... .....++..+..|...|.+++|+|++++|++++. |+.|++|++.+++.+..+
T Consensus 163 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~ 240 (372)
T 1k8k_C 163 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH--DSTVCLADADKKMAVATL 240 (372)
T ss_dssp TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET--TTEEEEEEGGGTTEEEEE
T ss_pred CCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeC--CCEEEEEECCCCceeEEE
Confidence 9999999964210 0123778888899999999999999999999998 999999999998887766
Q ss_pred CCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCC
Q 043172 523 PPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNH 560 (564)
Q Consensus 523 ~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~ 560 (564)
.. |...|++++|+|++.+|++| .||.|++|++..
T Consensus 241 ~~---~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 241 AS---ETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp EC---SSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred cc---CCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 53 44689999999999999888 899999999976
No 89
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.2e-33 Score=311.47 Aligned_cols=255 Identities=13% Similarity=0.178 Sum_probs=215.6
Q ss_pred CCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeC--CCEEEEEeCCCeEEEEE
Q 043172 257 ADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPD--GSQAIIAGRRKFFYSLD 334 (564)
Q Consensus 257 ~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspd--g~~l~s~~~dg~i~iwd 334 (564)
...+|.++|++++|+|++++|++|+.||+|+||++.......+..+.+|..+|.+++|+|+ +++|++++.||.|++||
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd 83 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 83 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEE
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEE
Confidence 4568999999999999999999999999999999986666778888999999999999988 99999999999999999
Q ss_pred CCCCceeeeccccccCCcceEEEEEcCC--CCEEEEEeCCCeEEEEECCCCcE--EEEe-eecCcEEEEEEec-------
Q 043172 335 LVKAKADKIGPLVGREEKSLEFFEVSPD--SSVIAFVGNEGYILLVSSKTKEL--IGTL-KMNGTVRSLAFAD------- 402 (564)
Q Consensus 335 l~~~~~~~~~~~~~~~~~~v~~~~~spd--g~~la~~~~dg~I~lwd~~t~~~--~~~~-~~~~~V~~l~~sp------- 402 (564)
+.++....+..+.+|.. .|.+++|+|+ ++++++++.+|.|++||+.++.. ...+ .|...|.+++|+|
T Consensus 84 ~~~~~~~~~~~~~~h~~-~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~ 162 (753)
T 3jro_A 84 EENGRWSQIAVHAVHSA-SVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (753)
T ss_dssp EETTEEEEEEEECCCSS-CEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-----
T ss_pred CCCCcccccccccCCCC-CeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccc
Confidence 99987555555666655 7999999999 99999999999999999988732 2223 3888999999999
Q ss_pred ------CCCEEEEEeCCCeEEEEECCCCc----eeEEEeecCCcceEEEEECCC---CCEEEEEeCCCcEEEEeCCcccC
Q 043172 403 ------DGKQLLSSGGDGQVYHWDLRTRT----CIHRAVDEGCINGTALCTSPD---GTFFAAGSDSGIVNVYNRQEFLG 469 (564)
Q Consensus 403 ------dg~~l~s~s~dg~V~lwD~~~~~----~~~~~~~~~~~~i~~l~~sp~---g~~lasgs~dg~V~iwd~~~~~~ 469 (564)
++.+|++|+.||.|++||++++. +...+. .+...|++++|+|+ +.+|++|+.||.|+|||+.....
T Consensus 163 ~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~-~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~ 241 (753)
T 3jro_A 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE-GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG 241 (753)
T ss_dssp ----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEEC-CCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSS
T ss_pred ccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeec-CCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCC
Confidence 58999999999999999998874 333343 34557999999999 89999999999999999987521
Q ss_pred CcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCC
Q 043172 470 GKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPS 515 (564)
Q Consensus 470 ~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s 515 (564)
.....+.....|...|++++|+|+|++|++++. ||.|++|++.+
T Consensus 242 ~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~--Dg~I~vwd~~~ 285 (753)
T 3jro_A 242 PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG--DNKVTLWKENL 285 (753)
T ss_dssp CCBCCBSSSSCCSSCCCCEEECTTTCCEEEECS--SSCEECCBCCS
T ss_pred cceeEEeccCCCCCceEEEEEcCCCCEEEEEcC--CCEEEEEecCC
Confidence 222244445568899999999999999999998 99999999874
No 90
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-33 Score=293.92 Aligned_cols=276 Identities=12% Similarity=0.176 Sum_probs=223.3
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEE-EeCCcCeEEEEEee-CCCEEEEEeCCCeEEEEECCC---Cceeee
Q 043172 269 QFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSI-FLEDCPVRKASFLP-DGSQAIIAGRRKFFYSLDLVK---AKADKI 343 (564)
Q Consensus 269 ~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~-~~~~~~I~~l~fsp-dg~~l~s~~~dg~i~iwdl~~---~~~~~~ 343 (564)
.|+|++..+++++ .|+.. ...+..+ .+|..+|++++|+| ++++|++|+.|+.|++||+.+ +.....
T Consensus 34 ~f~~~~~~~~~~~------~w~~~---g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 104 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGNLR---GKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSS 104 (437)
T ss_dssp GGCCCCCCCCCCC------GGGCC---CCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSC
T ss_pred hcCCccccccccc------ccccc---ceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccce
Confidence 3678888777765 37543 4577777 78899999999999 999999999999999999876 432111
Q ss_pred ccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECC---CCcEEEEee-------------ecCcEEEEE--EecCCC
Q 043172 344 GPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSK---TKELIGTLK-------------MNGTVRSLA--FADDGK 405 (564)
Q Consensus 344 ~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~---t~~~~~~~~-------------~~~~V~~l~--~spdg~ 405 (564)
....+| ...|.+++|+|++.+|++++.||.|++||+. +++.+..+. +...+.++. +++++.
T Consensus 105 ~~~~~h-~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (437)
T 3gre_A 105 SLTYDC-SSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKS 183 (437)
T ss_dssp SEEEEC-SSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCE
T ss_pred eeeccC-CCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCC
Confidence 112233 3489999999999999999999999999994 555544333 234566666 557899
Q ss_pred EEEEEeCCCeEEEEECCCCceeEEEeec-CCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEcc-cccc
Q 043172 406 QLLSSGGDGQVYHWDLRTRTCIHRAVDE-GCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIE-NLTT 483 (564)
Q Consensus 406 ~l~s~s~dg~V~lwD~~~~~~~~~~~~~-~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~-~~~~ 483 (564)
+|++++.||.|++||+++++++..+... +...+++++|+|++++|++|+.||.|+|||++.. .++.++. .|..
T Consensus 184 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~~~ 258 (437)
T 3gre_A 184 LLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN-----VLIRSWSFGDHA 258 (437)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT-----EEEEEEBCTTCE
T ss_pred EEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc-----cEEEEEecCCCC
Confidence 9999999999999999999999888763 4457999999999999999999999999999987 8888875 7788
Q ss_pred ceeEEEEc----CCCcEEEEEecCCCCeEEEEEcCCCceeccCCCC---------------------C--CCCCCcEEEE
Q 043172 484 KVDFMKFN----NDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPA---------------------N--RNLQYPRCLD 536 (564)
Q Consensus 484 ~I~~l~fs----pdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~---------------------~--~~~~~V~~l~ 536 (564)
+|++++|+ |++.+|++++. |+.|+||++.++.....+..+ . .|...|++++
T Consensus 259 ~v~~~~~~~~~s~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~ 336 (437)
T 3gre_A 259 PITHVEVCQFYGKNSVIVVGGSS--KTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTIS 336 (437)
T ss_dssp EEEEEEECTTTCTTEEEEEEEST--TEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEE
T ss_pred ceEEEEeccccCCCccEEEEEcC--CCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEE
Confidence 99999665 56889999998 999999999988765544322 1 1556799999
Q ss_pred EeCCCCEEEEEcCCCeEEEEEcCCCC
Q 043172 537 FSPGGGFMAVGNAAGKVFLYKLNHYH 562 (564)
Q Consensus 537 fspdg~~Lasgs~dG~V~lw~l~~~~ 562 (564)
|+ ++.+|++|+.||.|++|++.+.+
T Consensus 337 ~~-~~~~l~s~~~d~~i~~wd~~~~~ 361 (437)
T 3gre_A 337 VS-NDKILLTDEATSSIVMFSLNELS 361 (437)
T ss_dssp EE-TTEEEEEEGGGTEEEEEETTCGG
T ss_pred EC-CceEEEecCCCCeEEEEECCCcc
Confidence 99 77999999999999999997654
No 91
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.4e-32 Score=279.85 Aligned_cols=255 Identities=13% Similarity=0.169 Sum_probs=212.9
Q ss_pred CCCCCeeEEEEcCC---CCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEE------eeCCCEEEEEeCCCeE
Q 043172 260 SSTGPINSVQFHRN---AQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASF------LPDGSQAIIAGRRKFF 330 (564)
Q Consensus 260 ~h~~~V~~l~fspd---g~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~f------spdg~~l~s~~~dg~i 330 (564)
+|..+|++++|+|+ +.+|++|+.||.|++|++.... ..+..+..|...|.+++| +|++++|++++.++.|
T Consensus 63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i 141 (357)
T 3i2n_A 63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPE-MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTV 141 (357)
T ss_dssp EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCS-SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCE
T ss_pred cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCC-ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeE
Confidence 68999999999998 6999999999999999997543 267778899999999955 6799999999999999
Q ss_pred EEEECCCCc-eee-eccccccCCcceEEEE----EcCCCCEEEEEeCCCeEEEEECCCCcEEEEeeecCcEEEEEEec--
Q 043172 331 YSLDLVKAK-ADK-IGPLVGREEKSLEFFE----VSPDSSVIAFVGNEGYILLVSSKTKELIGTLKMNGTVRSLAFAD-- 402 (564)
Q Consensus 331 ~iwdl~~~~-~~~-~~~~~~~~~~~v~~~~----~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~~~~~V~~l~~sp-- 402 (564)
++||+.++. ... +....++....+.+++ |+|++++|++++.+|.|++||+++++......|...|.+++|+|
T Consensus 142 ~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~ 221 (357)
T 3i2n_A 142 KVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKD 221 (357)
T ss_dssp EEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSS
T ss_pred EEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCC
Confidence 999999876 322 2222333344788888 78899999999999999999999999887777999999999999
Q ss_pred -CCCEEEEEeCCCeEEEEECCCCceeEEEe----ecCCcceEEEEECCCCC-EEEEEeCCCcEEEEeCCcccCC------
Q 043172 403 -DGKQLLSSGGDGQVYHWDLRTRTCIHRAV----DEGCINGTALCTSPDGT-FFAAGSDSGIVNVYNRQEFLGG------ 470 (564)
Q Consensus 403 -dg~~l~s~s~dg~V~lwD~~~~~~~~~~~----~~~~~~i~~l~~sp~g~-~lasgs~dg~V~iwd~~~~~~~------ 470 (564)
++.+|++++.||.|++||++++.++..+. ..+...+++++|+|+++ +|++|+.||.|+|||+......
T Consensus 222 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 301 (357)
T 3i2n_A 222 ISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSE 301 (357)
T ss_dssp SSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTT
T ss_pred CCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCC
Confidence 99999999999999999998876554443 24555799999999998 8999999999999999864111
Q ss_pred --------cceeeEEccccccceeEEEEcCCCcEEE-EEecCCCCeEEEEEcCCCc
Q 043172 471 --------KRKPIKTIENLTTKVDFMKFNNDAQILA-ICSTMKKNSLKLIHIPSYN 517 (564)
Q Consensus 471 --------~~~~~~~~~~~~~~I~~l~fspdg~~La-~~s~~~d~~I~lwdl~s~~ 517 (564)
...++..+..|..+|++++|+|++++|+ +++. |+.|+||++.+..
T Consensus 302 g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~--d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 302 GIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSF--DQTVRVLIVTKLN 355 (357)
T ss_dssp SCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEET--TSEEEEEEECC--
T ss_pred CCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecC--CCcEEEEECCCcc
Confidence 1256778889999999999999999998 6887 9999999998754
No 92
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=4.2e-32 Score=280.60 Aligned_cols=270 Identities=13% Similarity=0.110 Sum_probs=215.1
Q ss_pred ccCC-CeEEcCCCccCCCeeeeeeee--cccCCCCCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEEecCCCCceeEEEEe
Q 043172 229 RTDE-DLVVKSSAKLSPGLLEYSRLI--DANADESSTGPINSVQFHR-NAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFL 304 (564)
Q Consensus 229 ~~~~-~~~~~~~~~l~~~~~d~~rl~--~~~~~~~h~~~V~~l~fsp-dg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~ 304 (564)
...+ .+++.++..-...+|++.... ......+|.+.|++++|+| ++.+|++++.|+.|++|++.+. .+..+..
T Consensus 82 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~ 158 (383)
T 3ei3_B 82 HPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGS---VIQVFAK 158 (383)
T ss_dssp CSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSC---EEEEEEC
T ss_pred CCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCC---ceEEEec
Confidence 3344 566655555555666665222 2222347999999999999 7899999999999999999853 4444444
Q ss_pred ---CCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCC-EEEEEeCCCeEEEEEC
Q 043172 305 ---EDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSS-VIAFVGNEGYILLVSS 380 (564)
Q Consensus 305 ---~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~-~la~~~~dg~I~lwd~ 380 (564)
+...|.+++|+|++++|++++.++.|++||+. +.. +..+.+|.. .|.+++|+|++. +|++++.|+.|++||+
T Consensus 159 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~--~~~~~~h~~-~v~~~~~~~~~~~~l~s~~~d~~i~iwd~ 234 (383)
T 3ei3_B 159 TDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHE--IFKEKLHKA-KVTHAEFNPRCDWLMATSSVDATVKLWDL 234 (383)
T ss_dssp CCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCE--EEEEECSSS-CEEEEEECSSCTTEEEEEETTSEEEEEEG
T ss_pred cCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCE--EEEeccCCC-cEEEEEECCCCCCEEEEEeCCCEEEEEeC
Confidence 34789999999999999999999999999995 433 333555554 799999999999 9999999999999999
Q ss_pred CC----CcEEEEeeecCcEEEEEEec-CCCEEEEEeCCCeEEEEECCCCceeEEEeecC------C----------cceE
Q 043172 381 KT----KELIGTLKMNGTVRSLAFAD-DGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEG------C----------INGT 439 (564)
Q Consensus 381 ~t----~~~~~~~~~~~~V~~l~~sp-dg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~------~----------~~i~ 439 (564)
.+ +..+..+.|...|++++|+| ++.+|++++.|+.|++||++++.++..+..+. . ..+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 314 (383)
T 3ei3_B 235 RNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLI 314 (383)
T ss_dssp GGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEE
T ss_pred CCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCce
Confidence 98 77888888999999999999 99999999999999999999887766655321 1 1234
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccc--cccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCC
Q 043172 440 ALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIEN--LTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPS 515 (564)
Q Consensus 440 ~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~--~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s 515 (564)
.++|+|++++ +|+.||.|+|||+.++ +++..+.+ +...+..++|+|++++|++++ |+.|+||++.+
T Consensus 315 ~~~~s~dg~~--s~s~d~~i~iwd~~~~-----~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s---d~~i~iw~~~~ 382 (383)
T 3ei3_B 315 VAGRYPDDQL--LLNDKRTIDIYDANSG-----GLVHQLRDPNAAGIISLNKFSPTGDVLASGM---GFNILIWNRED 382 (383)
T ss_dssp EEECBCCTTT--CTTCCCCEEEEETTTC-----CEEEEECBTTBCSCCCEEEECTTSSEEEEEE---TTEEEEEECC-
T ss_pred EEEecCCccc--ccCCCCeEEEEecCCC-----ceeeeecCCCCCceEEEEEEecCccEEEEec---CCcEEEEecCC
Confidence 4566666665 6778999999999887 78888876 557788889999999999995 79999999864
No 93
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1e-31 Score=280.16 Aligned_cols=249 Identities=17% Similarity=0.200 Sum_probs=210.2
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCc
Q 043172 260 SSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAK 339 (564)
Q Consensus 260 ~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~ 339 (564)
.|...|++++|+|++.+|++|+.||.|++|++.. ...+..+..|...|.+++| ++++|++++.++.|++||+....
T Consensus 132 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~ 207 (401)
T 4aez_A 132 DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVES--QTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIAN 207 (401)
T ss_dssp CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT--CCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSS
T ss_pred CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcC--CeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCc
Confidence 3889999999999999999999999999999874 4577888899999999999 46799999999999999998543
Q ss_pred eeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCC-EEEEEe--CCCe
Q 043172 340 ADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGK-QLLSSG--GDGQ 415 (564)
Q Consensus 340 ~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~-~l~s~s--~dg~ 415 (564)
. .+..+.+|.. .|.+++|+|++++|++++.||.|++||+.+++.+..+. |...|.+++|+|++. ++++++ .|+.
T Consensus 208 ~-~~~~~~~~~~-~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~ 285 (401)
T 4aez_A 208 H-QIGTLQGHSS-EVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQ 285 (401)
T ss_dssp C-EEEEEECCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCE
T ss_pred c-eeeEEcCCCC-CeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCE
Confidence 2 1333555554 79999999999999999999999999999999988886 889999999999765 555554 6999
Q ss_pred EEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEE--EeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCC
Q 043172 416 VYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAA--GSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNND 493 (564)
Q Consensus 416 V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~las--gs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspd 493 (564)
|++||+.+++++..+... ..+.+++|+|++++|++ |+.+|.|+||++... .......+.+|...|.+++|+|+
T Consensus 286 i~i~d~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~---~~~~~~~~~~h~~~v~~~~~s~d 360 (401)
T 4aez_A 286 IHFWNAATGARVNTVDAG--SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSS---GLTKQVDIPAHDTRVLYSALSPD 360 (401)
T ss_dssp EEEEETTTCCEEEEEECS--SCEEEEEECSSSSEEEEEECTTTCEEEEEEEETT---EEEEEEEEECCSSCCCEEEECTT
T ss_pred EEEEECCCCCEEEEEeCC--CcEEEEEECCCCCeEEEEeecCCCcEEEEecCCc---cceeEEEecCCCCCEEEEEECCC
Confidence 999999999988877533 36899999999999999 458999999999874 12445557789999999999999
Q ss_pred CcEEEEEecCCCCeEEEEEcCCCceecc
Q 043172 494 AQILAICSTMKKNSLKLIHIPSYNVFSN 521 (564)
Q Consensus 494 g~~La~~s~~~d~~I~lwdl~s~~~~~~ 521 (564)
|++|++++. |+.|++|++.+++.+..
T Consensus 361 g~~l~s~~~--dg~i~iw~~~~~~~~~~ 386 (401)
T 4aez_A 361 GRILSTAAS--DENLKFWRVYDGDHVKR 386 (401)
T ss_dssp SSEEEEECT--TSEEEEEECCC------
T ss_pred CCEEEEEeC--CCcEEEEECCCCccccc
Confidence 999999998 99999999998876553
No 94
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.7e-33 Score=286.11 Aligned_cols=253 Identities=10% Similarity=0.039 Sum_probs=201.6
Q ss_pred EEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 043172 302 IFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSK 381 (564)
Q Consensus 302 ~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~ 381 (564)
.+.+..+|++++|+|++++|++++.++.|++|++.++....+..+.+|.. .|.+++|+|++++|++++.||.|++||+.
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~-~v~~~~~s~~~~~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDK-IVTCVDWAPKSNRIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSS-CEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCc-eEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence 44567899999999999999999999999999999885444556667665 79999999999999999999999999999
Q ss_pred CCc---EEEEee-ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCc---eeEEEeecCCcceEEEEECCCCCEEEEEe
Q 043172 382 TKE---LIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRT---CIHRAVDEGCINGTALCTSPDGTFFAAGS 454 (564)
Q Consensus 382 t~~---~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~---~~~~~~~~~~~~i~~l~~sp~g~~lasgs 454 (564)
+++ ....+. |...|.+++|+|++++|++++.|+.|++||+.+++ +...+...+...+++++|+|++++|++|+
T Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 165 (377)
T 3dwl_C 86 PDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGC 165 (377)
T ss_dssp ---CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEE
T ss_pred CCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEe
Confidence 887 444444 88999999999999999999999999999999876 35666653566899999999999999999
Q ss_pred CCCcEEEEeCCcccC-------------CcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceec-
Q 043172 455 DSGIVNVYNRQEFLG-------------GKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFS- 520 (564)
Q Consensus 455 ~dg~V~iwd~~~~~~-------------~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~- 520 (564)
.||.|++||+..... ....++..+ .|...|++++|+|++++|++++. |+.|+||++.++....
T Consensus 166 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~--d~~i~iwd~~~~~~~~~ 242 (377)
T 3dwl_C 166 ADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGH--DSSVTIAYPSAPEQPPR 242 (377)
T ss_dssp SSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEET--TTEEC-CEECSTTSCEE
T ss_pred CCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeC--CCcEEEEECCCCCCcce
Confidence 999999999853210 013566667 89999999999999999999998 9999999999887611
Q ss_pred cCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q 043172 521 NWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLN 559 (564)
Q Consensus 521 ~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~ 559 (564)
.......|...|++++|+|++++|++|+.++.+ +|+..
T Consensus 243 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 243 ALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp ECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred eeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 122334566889999999999999999877655 67654
No 95
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=3e-32 Score=278.19 Aligned_cols=246 Identities=14% Similarity=0.124 Sum_probs=206.7
Q ss_pred CCCCCeeEEEEcCC----CCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEee-CCCEEEEEeCCCeEEEEE
Q 043172 260 SSTGPINSVQFHRN----AQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLP-DGSQAIIAGRRKFFYSLD 334 (564)
Q Consensus 260 ~h~~~V~~l~fspd----g~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fsp-dg~~l~s~~~dg~i~iwd 334 (564)
.|...|++++|+|+ +.+|++|+.||.|++|++.. ...+..+..|..+|.+++|+| ++++|++++.++.|++||
T Consensus 67 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd 144 (366)
T 3k26_A 67 DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPIT--MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWN 144 (366)
T ss_dssp CTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTT--CCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEE
T ss_pred CCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchh--ceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEE
Confidence 47889999999998 67999999999999999874 457788889999999999999 999999999999999999
Q ss_pred CCCCceeeeccc-cccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-----------------------
Q 043172 335 LVKAKADKIGPL-VGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK----------------------- 390 (564)
Q Consensus 335 l~~~~~~~~~~~-~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~----------------------- 390 (564)
+.+++....... .+|. ..|.+++|+|++++|++++.+|.|++||+.+++.+..+.
T Consensus 145 ~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (366)
T 3k26_A 145 IQTDTLVAIFGGVEGHR-DEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPD 223 (366)
T ss_dssp TTTTEEEEEECSTTSCS-SCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCS
T ss_pred eecCeEEEEeccccccc-CceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCc
Confidence 999876544221 3444 479999999999999999999999999998875443222
Q ss_pred ------ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCce--------------eEEEeecCCcceEEEEECCC--CC
Q 043172 391 ------MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTC--------------IHRAVDEGCINGTALCTSPD--GT 448 (564)
Q Consensus 391 ------~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~--------------~~~~~~~~~~~i~~l~~sp~--g~ 448 (564)
|...|.+++|+ +.+|++++.||.|++||+.++.. +..+..+ ...+++++|+|+ ++
T Consensus 224 ~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~~ 300 (366)
T 3k26_A 224 FSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS-QCDIWYMRFSMDFWQK 300 (366)
T ss_dssp EEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS-SCCSSCCCCEECTTSS
T ss_pred cccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheecccccc-CCcEEEEEEcCCCCCc
Confidence 78899999999 77999999999999999987654 4444433 346889999999 99
Q ss_pred EEEEEeCCCcEEEEeCCcccCCcceeeEEcccc--ccceeEEEEcCCCcEEEEEecCCCCeEEEEEcC
Q 043172 449 FFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENL--TTKVDFMKFNNDAQILAICSTMKKNSLKLIHIP 514 (564)
Q Consensus 449 ~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~--~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~ 514 (564)
+|++|+.+|.|+|||+.... .....+..+..| ...|++++|+|++++|++++. |+.|++|++.
T Consensus 301 ~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~--dg~i~iwd~~ 365 (366)
T 3k26_A 301 MLALGNQVGKLYVWDLEVED-PHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCD--DASIWRWDRL 365 (366)
T ss_dssp EEEEECTTSCEEEEECCSSS-GGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEET--TSEEEEEEC-
T ss_pred EEEEEecCCcEEEEECCCCC-CccccceEEcccccCCceEEEEeCCCCCeEEEEeC--CCEEEEEEec
Confidence 99999999999999998751 011244466666 799999999999999999998 9999999985
No 96
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=2.7e-31 Score=272.65 Aligned_cols=280 Identities=13% Similarity=0.096 Sum_probs=211.9
Q ss_pred CCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEE-EEeCCCeEEEEEC
Q 043172 257 ADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAI-IAGRRKFFYSLDL 335 (564)
Q Consensus 257 ~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~-s~~~dg~i~iwdl 335 (564)
...+|..+|++++|+|+|++|++|+.++ ++||++... ..+.... ...+..++|.++++.++ +++.++.|++||+
T Consensus 14 ~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~ 88 (355)
T 3vu4_A 14 PENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPV--AHIMSQE--MRHLSKVRMLHRTNYVAFVTGVKEVVHIWDD 88 (355)
T ss_dssp -----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTE--EEEEEEE--CSCCCEEEECTTSSEEEEECSSTTEEEEEET
T ss_pred ccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCc--ceeeeee--cCCeEEEEEcCCCCEEEEEECCccEEEEEEC
Confidence 3467999999999999999999998765 789998743 3333332 23578889999888885 4567889999999
Q ss_pred CCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCC-cEEEEeeecCcEEEEEEecCCCEEEE--EeC
Q 043172 336 VKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTK-ELIGTLKMNGTVRSLAFADDGKQLLS--SGG 412 (564)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~-~~~~~~~~~~~V~~l~~spdg~~l~s--~s~ 412 (564)
.+++.... +. +. ..|.+++|+++. ++++ .++.|++||+.++ +.+..+.. +...+++++ .++++ |+.
T Consensus 89 ~~~~~~~~--~~-~~-~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~--~~~~~~~s~--~~la~~sg~~ 157 (355)
T 3vu4_A 89 VKKQDVSR--IK-VD-APVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR--FGGVCEFSN--GLLVYSNEFN 157 (355)
T ss_dssp TTTEEEEE--EE-CS-SCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE--EEEEEEEET--TEEEEEESSC
T ss_pred CCCcEEEE--EE-CC-CceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc--CCceEEEEc--cEEEEeCCCc
Confidence 99987553 32 23 269999998764 3333 4789999999988 66655554 455566777 56666 478
Q ss_pred CCeEEEEECCCCc----------------eeEEEeecCCcceEEEEECCCCCEEEEEeCCCc-EEEEeCCcccCCcceee
Q 043172 413 DGQVYHWDLRTRT----------------CIHRAVDEGCINGTALCTSPDGTFFAAGSDSGI-VNVYNRQEFLGGKRKPI 475 (564)
Q Consensus 413 dg~V~lwD~~~~~----------------~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~-V~iwd~~~~~~~~~~~~ 475 (564)
+|.|++||+.++. ++..+. .|...|++++|+|+|++||+|+.||+ |+|||+.++ +++
T Consensus 158 ~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~-~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~-----~~~ 231 (355)
T 3vu4_A 158 LGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIK-AHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG-----VLV 231 (355)
T ss_dssp TTCEEEEECCC------------------CCEEEC-CCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTC-----CEE
T ss_pred CcEEEEEECCCCCccccccccccccccCcccEEEE-ccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCC-----cEE
Confidence 9999999999765 144454 44558999999999999999999998 999999987 888
Q ss_pred EEcc-c-cccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceec--cC------------------CCCCCCCCCcE
Q 043172 476 KTIE-N-LTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFS--NW------------------PPANRNLQYPR 533 (564)
Q Consensus 476 ~~~~-~-~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~--~~------------------~~~~~~~~~V~ 533 (564)
.++. + |...|++++|+|+|++|++++. |+.|+||++....... .+ ...........
T Consensus 232 ~~~~~g~h~~~v~~~~~s~~~~~l~s~s~--d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (355)
T 3vu4_A 232 REFRRGLDRADVVDMKWSTDGSKLAVVSD--KWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGC 309 (355)
T ss_dssp EEEECTTCCSCEEEEEECTTSCEEEEEET--TCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCC
T ss_pred EEEEcCCCCCcEEEEEECCCCCEEEEEEC--CCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCce
Confidence 8887 5 9999999999999999999999 9999999997653211 00 00111122347
Q ss_pred EEEEeCCCCEEEEEcCCCeEEEEEcCC
Q 043172 534 CLDFSPGGGFMAVGNAAGKVFLYKLNH 560 (564)
Q Consensus 534 ~l~fspdg~~Lasgs~dG~V~lw~l~~ 560 (564)
.++|+|+|++|++++.||.+++|++..
T Consensus 310 ~~a~~~d~~~l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 310 KIAWISESSLVVVWPHTRMIETFKVVF 336 (355)
T ss_dssp EEEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred EEEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence 799999999999999999999999864
No 97
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=4.2e-31 Score=278.31 Aligned_cols=252 Identities=12% Similarity=0.158 Sum_probs=205.9
Q ss_pred EEEEeCCcCeEEEEEeeC-CCEEEEEeCCCeEEEEECCC--------CceeeeccccccCCcceEEEEEcCCCC-EEEEE
Q 043172 300 QSIFLEDCPVRKASFLPD-GSQAIIAGRRKFFYSLDLVK--------AKADKIGPLVGREEKSLEFFEVSPDSS-VIAFV 369 (564)
Q Consensus 300 ~~~~~~~~~I~~l~fspd-g~~l~s~~~dg~i~iwdl~~--------~~~~~~~~~~~~~~~~v~~~~~spdg~-~la~~ 369 (564)
.....|...|++++|+|+ +.+|++++.+|.|++|++.+ +....+..+.+|.. .+.+++|+|++. +|+++
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~~~~~~~~l~s~ 200 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQK-EGYGLSWNPNLNGYLLSA 200 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSS-CCCCEEECTTSTTEEEEE
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCC-CeEEEEeCCCCCCeEEEE
Confidence 445678999999999997 67889999999999999976 22233444556655 799999999988 99999
Q ss_pred eCCCeEEEEECCCCc----E---EEEee-ecCcEEEEEEec-CCCEEEEEeCCCeEEEEECCCC---ceeEEEeecCCcc
Q 043172 370 GNEGYILLVSSKTKE----L---IGTLK-MNGTVRSLAFAD-DGKQLLSSGGDGQVYHWDLRTR---TCIHRAVDEGCIN 437 (564)
Q Consensus 370 ~~dg~I~lwd~~t~~----~---~~~~~-~~~~V~~l~~sp-dg~~l~s~s~dg~V~lwD~~~~---~~~~~~~~~~~~~ 437 (564)
+.+|.|++|++.++. . ...+. |...|.+++|+| ++.+|++++.||.|++||++++ ..+..+. .+...
T Consensus 201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~ 279 (430)
T 2xyi_A 201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD-AHTAE 279 (430)
T ss_dssp CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEE-CCSSC
T ss_pred eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEee-cCCCC
Confidence 999999999998732 1 23333 888999999999 6789999999999999999987 4555554 34457
Q ss_pred eEEEEECCCCC-EEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCc-EEEEEecCCCCeEEEEEcCC
Q 043172 438 GTALCTSPDGT-FFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQ-ILAICSTMKKNSLKLIHIPS 515 (564)
Q Consensus 438 i~~l~~sp~g~-~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~-~La~~s~~~d~~I~lwdl~s 515 (564)
+++++|+|++. +|++|+.+|.|+|||++.. ..++..+..|...|++++|+|++. +|++++. ++.|+||++..
T Consensus 280 v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~----~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~--d~~i~iwd~~~ 353 (430)
T 2xyi_A 280 VNCLSFNPYSEFILATGSADKTVALWDLRNL----KLKLHSFESHKDEIFQVQWSPHNETILASSGT--DRRLHVWDLSK 353 (430)
T ss_dssp EEEEEECSSCTTEEEEEETTSEEEEEETTCT----TSCSEEEECCSSCEEEEEECSSCTTEEEEEET--TSCCEEEEGGG
T ss_pred eEEEEeCCCCCCEEEEEeCCCeEEEEeCCCC----CCCeEEeecCCCCEEEEEECCCCCCEEEEEeC--CCcEEEEeCCC
Confidence 99999999987 7899999999999999873 267888889999999999999995 6888887 89999999987
Q ss_pred Ccee-----------ccCCCCCCCCCCcEEEEEeCCCC-EEEEEcCCCeEEEEEcC
Q 043172 516 YNVF-----------SNWPPANRNLQYPRCLDFSPGGG-FMAVGNAAGKVFLYKLN 559 (564)
Q Consensus 516 ~~~~-----------~~~~~~~~~~~~V~~l~fspdg~-~Lasgs~dG~V~lw~l~ 559 (564)
.... ..+....+|...|++++|+|++. +|++++.||.|+||++.
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 354 IGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp TTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred CccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence 2210 11123345667899999999999 89999999999999985
No 98
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2.6e-32 Score=287.88 Aligned_cols=275 Identities=11% Similarity=0.115 Sum_probs=210.0
Q ss_pred CCeEEcCCCccCCCeeeeee--eecccCCCCCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcC
Q 043172 232 EDLVVKSSAKLSPGLLEYSR--LIDANADESSTGPINSVQFHR-NAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCP 308 (564)
Q Consensus 232 ~~~~~~~~~~l~~~~~d~~r--l~~~~~~~~h~~~V~~l~fsp-dg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~ 308 (564)
..+++.++..-...+||+.. ........+|.++|++|+|+| ++.+|++|+.||+|+|||+.+.....+.....+...
T Consensus 132 ~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~ 211 (435)
T 4e54_B 132 PSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIW 211 (435)
T ss_dssp TTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCC
T ss_pred CCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCcc
Confidence 44566655566666777642 222234568999999999998 689999999999999999975422222222233456
Q ss_pred eEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEE
Q 043172 309 VRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSS-VIAFVGNEGYILLVSSKTKELIG 387 (564)
Q Consensus 309 I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~-~la~~~~dg~I~lwd~~t~~~~~ 387 (564)
+.+++|+|++.+|++|+.++.|++||+.+.. +..+.+|.. .|.+++|+|++. +|++++.|+.|++||+++.+...
T Consensus 212 ~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~---~~~~~~h~~-~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~ 287 (435)
T 4e54_B 212 FCSLDVSASSRMVVTGDNVGNVILLNMDGKE---LWNLRMHKK-KVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKA 287 (435)
T ss_dssp CCCEEEETTTTEEEEECSSSBEEEEESSSCB---CCCSBCCSS-CEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSS
T ss_pred EEEEEECCCCCEEEEEeCCCcEeeeccCcce---eEEEecccc-eEEeeeecCCCceEEEEecCcceeeEEecccccccc
Confidence 7899999999999999999999999997644 344666665 799999999876 78889999999999998765443
Q ss_pred Ee----eecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecC-----CcceEEEEECCCCCEEEEEe----
Q 043172 388 TL----KMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEG-----CINGTALCTSPDGTFFAAGS---- 454 (564)
Q Consensus 388 ~~----~~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~-----~~~i~~l~~sp~g~~lasgs---- 454 (564)
.+ .|...|++++|+|+|++|++++.||.|++||+.++.+...+..+. ...+..++|+|++.++++++
T Consensus 288 ~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 367 (435)
T 4e54_B 288 SFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDP 367 (435)
T ss_dssp CCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCT
T ss_pred eEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCC
Confidence 33 378899999999999999999999999999999988776665432 11234567788877777764
Q ss_pred --------CCCcEEEEeCCcccCCcceeeEEc-cccccceeEE-EEcCCCcEEEEEecCCCCeEEEEEcCCCce
Q 043172 455 --------DSGIVNVYNRQEFLGGKRKPIKTI-ENLTTKVDFM-KFNNDAQILAICSTMKKNSLKLIHIPSYNV 518 (564)
Q Consensus 455 --------~dg~V~iwd~~~~~~~~~~~~~~~-~~~~~~I~~l-~fspdg~~La~~s~~~d~~I~lwdl~s~~~ 518 (564)
.++.|+|||..++ +.+..+ .+|...|.++ +|+|+|++|++|+ ++.|+||++.+++.
T Consensus 368 ~~~~~~~~~~~~i~iwd~~~g-----~~~~~l~~~~~~~v~s~~~fspdg~~lasg~---d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 368 NFKSCTPYELRTIDVFDGNSG-----KMMCQLYDPESSGISSLNEFNPMGDTLASAM---GYHILIWSQQEART 433 (435)
T ss_dssp TSCCSSTTCCCCEEEECSSSC-----CEEEEECCSSCCCCCCEEEECTTSSCEEEEC---SSEEEECCCC----
T ss_pred CeEEEEecCCCEEEEEECCCC-----cEEEEEeCCCCCcEEEEEEECCCCCEEEEEc---CCcEEEEECCcCee
Confidence 2357999999887 666665 4678888887 6999999999876 67999999988754
No 99
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=7.4e-31 Score=275.38 Aligned_cols=248 Identities=15% Similarity=0.232 Sum_probs=210.7
Q ss_pred CCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCC
Q 043172 258 DESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVK 337 (564)
Q Consensus 258 ~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~ 337 (564)
..+|...|+||+|+|+|++|++|+.||+|+||++. ....+..+.+|...+.+++|+ +..|++++.++.+++||...
T Consensus 143 ~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~--~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~ 218 (420)
T 4gga_A 143 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ--QQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRV 218 (420)
T ss_dssp CCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETT--TTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTS
T ss_pred ecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcC--CCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecc
Confidence 35688899999999999999999999999999987 456788889999999887764 67999999999999999887
Q ss_pred CceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE----EEEee-ecCcEEEEEEecCC-CEEEEE-
Q 043172 338 AKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKEL----IGTLK-MNGTVRSLAFADDG-KQLLSS- 410 (564)
Q Consensus 338 ~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~----~~~~~-~~~~V~~l~~spdg-~~l~s~- 410 (564)
... .+..+.+|.. .+..+.++|++.++++++.|+.|++|++.+++. +.... |.+.|.+++|+|.+ .+++++
T Consensus 219 ~~~-~~~~~~~h~~-~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~ 296 (420)
T 4gga_A 219 AEH-HVATLSGHSQ-EVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG 296 (420)
T ss_dssp SSC-EEEEEECCSS-CEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEE
T ss_pred cce-eeEEeccccc-ceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEe
Confidence 553 2334556655 799999999999999999999999999987653 23333 78899999999965 455554
Q ss_pred -eCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEe--CCCcEEEEeCCcccCCcceeeEEccccccceeE
Q 043172 411 -GGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGS--DSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDF 487 (564)
Q Consensus 411 -s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs--~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~ 487 (564)
+.|++|++||+.++.++..+..+. .+.++.|+|+++.+++++ .||.|+|||+.++ +++.++.+|...|++
T Consensus 297 gs~D~~I~iwd~~t~~~~~~~~~~~--~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~-----~~v~~l~gH~~~V~~ 369 (420)
T 4gga_A 297 GTSDRHIRIWNVCSGACLSAVDAHS--QVCSILWSPHYKELISGHGFAQNQLVIWKYPTM-----AKVAELKGHTSRVLS 369 (420)
T ss_dssp CTTTCEEEEEETTTTEEEEEEECSS--CEEEEEEETTTTEEEEEECTTTCCEEEEETTTC-----CEEEEECCCSSCEEE
T ss_pred ecCCCEEEEEeCCccccceeecccc--ceeeeeecCCCCeEEEEEecCCCEEEEEECCCC-----cEEEEEcCCCCCEEE
Confidence 469999999999999988776543 578999999999888765 7899999999987 899999999999999
Q ss_pred EEEcCCCcEEEEEecCCCCeEEEEEcCCCceec
Q 043172 488 MKFNNDAQILAICSTMKKNSLKLIHIPSYNVFS 520 (564)
Q Consensus 488 l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~ 520 (564)
|+|+|+|++|++|+. |++|+||++.......
T Consensus 370 l~~spdg~~l~S~s~--D~tvriWdv~~~~~~~ 400 (420)
T 4gga_A 370 LTMSPDGATVASAAA--DETLRLWRCFELDPAR 400 (420)
T ss_dssp EEECTTSSCEEEEET--TTEEEEECCSCSSCC-
T ss_pred EEEcCCCCEEEEEec--CCeEEEEECCCCCccc
Confidence 999999999999999 9999999997655433
No 100
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.8e-32 Score=285.28 Aligned_cols=265 Identities=12% Similarity=0.071 Sum_probs=210.9
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCce
Q 043172 261 STGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKA 340 (564)
Q Consensus 261 h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~ 340 (564)
-...|.+|+|+|||+++|||+.|++|+ +.. .... +.+|...|.+++|+|+| .++.+.+|+ ++.
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~--~~~~---l~gh~~~v~~V~FsPdg-------~~~~~~~~~---~~~ 76 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPK--YAKD---INCNSKNLFHVKEFPLE-------FENKLDFEL---AQQ 76 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSSSEEEE--EEC--CCSC---CSSBGGGTEEEEEECCC-------CCCTTTTSC---CCS
T ss_pred hhccEEEEEECCCCCEEEEEcCCceee--ccc--ccce---ecCCCccEEEEEECCCC-------CcceEEEEe---CCC
Confidence 457899999999999999999999999 533 3333 36899999999999998 344444444 433
Q ss_pred eeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeeecC-----cEEEEEEecCCCEEEEEeCCCe
Q 043172 341 DKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLKMNG-----TVRSLAFADDGKQLLSSGGDGQ 415 (564)
Q Consensus 341 ~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~~~~-----~V~~l~~spdg~~l~s~s~dg~ 415 (564)
..+..+ .+ ...|.+++|||+|.+||+++.+|.|++|+..+ ++..+.|.. .|.+++|+|+|++|++|+.||+
T Consensus 77 ~~~~~~-~~-~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGt 152 (588)
T 2j04_A 77 NGLLNS-QP-VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGE 152 (588)
T ss_dssp SCSSTT-SC-SCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSE
T ss_pred ceEeec-CC-CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCE
Confidence 223223 33 45799999999999999999999999999654 555555444 4999999999999999999999
Q ss_pred EEEEECCCCce-------eEEEe---ecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEc-cccccc
Q 043172 416 VYHWDLRTRTC-------IHRAV---DEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTI-ENLTTK 484 (564)
Q Consensus 416 V~lwD~~~~~~-------~~~~~---~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~-~~~~~~ 484 (564)
|++||+.++.. +..+. ..|...|.+++|+|+| +++++.|+.|++|++... .......++ .+|...
T Consensus 153 VkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~--~~~~~~~tL~~~h~~~ 228 (588)
T 2j04_A 153 LQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSAS--SHQPVSRMIQNASRRK 228 (588)
T ss_dssp EEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSS--SSCCCEEEEECCCSSC
T ss_pred EEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCC--ccccceeeecccccCc
Confidence 99999998753 45553 2344689999999999 888999999999999875 111133456 478889
Q ss_pred eeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEE--eCCCCEEEEEcCCCeEEEEEcC
Q 043172 485 VDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDF--SPGGGFMAVGNAAGKVFLYKLN 559 (564)
Q Consensus 485 I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~f--spdg~~Lasgs~dG~V~lw~l~ 559 (564)
|.+++|+ |++||+++ ++.|++|++.++...... .+|...|..++| +|++..|++++.+|+ ++|.++
T Consensus 229 V~svaFs--g~~LASa~---~~tIkLWd~~~~~~~~~~---~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 229 ITDLKIV--DYKVVLTC---PGYVHKIDLKNYSISSLK---TGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp CCCEEEE--TTEEEEEC---SSEEEEEETTTTEEEEEE---CSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred EEEEEEE--CCEEEEEe---CCeEEEEECCCCeEEEEE---cCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 9999999 68999886 589999999987763211 146788999999 999999999999999 999875
No 101
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=2.7e-31 Score=276.79 Aligned_cols=268 Identities=11% Similarity=0.103 Sum_probs=217.2
Q ss_pred ccCCCeeeeeee----ecccCCCCCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEEecCCCC-----ceeEEEEeCCcCeE
Q 043172 241 KLSPGLLEYSRL----IDANADESSTGPINSVQFHR-NAQLLLVAGLDRRLRFFQIDGKRN-----TKIQSIFLEDCPVR 310 (564)
Q Consensus 241 ~l~~~~~d~~rl----~~~~~~~~h~~~V~~l~fsp-dg~~l~s~s~dg~I~lwd~~~~~~-----~~~~~~~~~~~~I~ 310 (564)
.-...+|++.+. .......+|.++|++++|+| ++.+|++|+.||+|+||++..... ..+..+.+|...|.
T Consensus 56 ~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~ 135 (402)
T 2aq5_A 56 GGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVG 135 (402)
T ss_dssp SCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEE
T ss_pred CCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEE
Confidence 334445655321 23345678999999999999 999999999999999999975432 46778889999999
Q ss_pred EEEEeeCC-CEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Q 043172 311 KASFLPDG-SQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTL 389 (564)
Q Consensus 311 ~l~fspdg-~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~ 389 (564)
+++|+|++ ++|++++.|+.|++||+.+++........+|.. .|.+++|+|++++|++++.||.|++||+++++.+..+
T Consensus 136 ~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 214 (402)
T 2aq5_A 136 IVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPD-TIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEK 214 (402)
T ss_dssp EEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCS-CEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEE
T ss_pred EEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCC-ceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeee
Confidence 99999998 699999999999999999988654321144544 7999999999999999999999999999999999888
Q ss_pred -e-ecCc-EEEEEEecCCCEEEEE---eCCCeEEEEECCCCce-eEEEeecCCcceEEEEECCCCCEEE-EEeCCCcEEE
Q 043172 390 -K-MNGT-VRSLAFADDGKQLLSS---GGDGQVYHWDLRTRTC-IHRAVDEGCINGTALCTSPDGTFFA-AGSDSGIVNV 461 (564)
Q Consensus 390 -~-~~~~-V~~l~~spdg~~l~s~---s~dg~V~lwD~~~~~~-~~~~~~~~~~~i~~l~~sp~g~~la-sgs~dg~V~i 461 (564)
. |.+. +.+++|+|++.+|++| +.++.|++||++++.. +......+...+.+++|+|++++|+ +|+.||.|++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i 294 (402)
T 2aq5_A 215 DRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRY 294 (402)
T ss_dssp ECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEE
T ss_pred ccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEE
Confidence 3 6554 8999999999999998 7899999999998664 3334434455789999999999886 5567999999
Q ss_pred EeCCcccCCccee-eEEccc--cccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCce
Q 043172 462 YNRQEFLGGKRKP-IKTIEN--LTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNV 518 (564)
Q Consensus 462 wd~~~~~~~~~~~-~~~~~~--~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~ 518 (564)
|++... ++ +..+.. +..+|.+++|+|++.++++ . ++.+++|++.++..
T Consensus 295 ~d~~~~-----~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~--~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 295 FEITSE-----APFLHYLSMFSSKESQRGMGYMPKRGLEVN--K--CEIARFYKLHERKC 345 (402)
T ss_dssp EEECSS-----TTCEEEEEEECCSSCCSEEEECCGGGSCGG--G--TEEEEEEEEETTEE
T ss_pred EEecCC-----CcceEeecccccCCcccceEEeccccccee--c--ceeEEEEEcCCCcE
Confidence 999876 32 333333 5689999999999998864 3 66999999987643
No 102
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=1.2e-30 Score=273.91 Aligned_cols=282 Identities=17% Similarity=0.197 Sum_probs=233.6
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeE-----EEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCC
Q 043172 263 GPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQ-----SIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVK 337 (564)
Q Consensus 263 ~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~-----~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~ 337 (564)
..+.+++|+|++.++++++.++.|++|++.... .+. .+..|...|.+++|+|++..+++++.++.|++||+.+
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~ 200 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQ--TVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKT 200 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCC--EEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTT
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCe--EeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCC
Confidence 457799999987888888889999999987543 333 2335778999999999999999999999999999998
Q ss_pred CceeeeccccccCCcceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEEe-----
Q 043172 338 AKADKIGPLVGREEKSLEFFEVSPDSSVIAFVG-NEGYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSG----- 411 (564)
Q Consensus 338 ~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~-~dg~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s----- 411 (564)
++.... +..+. ..+.+++|+|+++++++++ .++.|++||+.+++.+..+.....+.+++|+|++++|++++
T Consensus 201 ~~~~~~--~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~ 277 (433)
T 3bws_A 201 LAYKAT--VDLTG-KWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASN 277 (433)
T ss_dssp CCEEEE--EECSS-SSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCT
T ss_pred ceEEEE--EcCCC-CCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCc
Confidence 876443 33333 3689999999999886555 78999999999999988888777899999999999999888
Q ss_pred ---CCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEE-EEEeCCCcEEEEeCCcccCCcceeeEEccccccceeE
Q 043172 412 ---GDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFF-AAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDF 487 (564)
Q Consensus 412 ---~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l-asgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~ 487 (564)
.||.|++||+.+++.+..+.... .+.+++|+|+++++ ++++.++.|.+||+.++ +.+..+. +...+.+
T Consensus 278 ~~~~dg~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~-----~~~~~~~-~~~~~~~ 349 (433)
T 3bws_A 278 QESGGGRLGIYSMDKEKLIDTIGPPG--NKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK-----KVQKSIP-VFDKPNT 349 (433)
T ss_dssp TCSCCEEEEEEETTTTEEEEEEEEEE--CEEEEEECSSTTEEEEEETTTTEEEEEETTTT-----EEEEEEE-CSSSEEE
T ss_pred cccCCCeEEEEECCCCcEEeeccCCC--CcceEEECCCCCEEEEEecCCCEEEEEECCCC-----cEEEEec-CCCCCCe
Confidence 48899999999988776654332 56889999999754 66689999999999876 6666665 6678999
Q ss_pred EEEcCCCcEEEEEecCC-------------CCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcC-CCeE
Q 043172 488 MKFNNDAQILAICSTMK-------------KNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNA-AGKV 553 (564)
Q Consensus 488 l~fspdg~~La~~s~~~-------------d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~-dG~V 553 (564)
++|+|+|++|++++... ||.|++|++.+++....++.. ..+.+++|+|+|++|++++. +|.|
T Consensus 350 ~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~d~~i 425 (433)
T 3bws_A 350 IALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG----NQPTGLDVSPDNRYLVISDFLDHQI 425 (433)
T ss_dssp EEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS----SSEEEEEECTTSCEEEEEETTTTEE
T ss_pred EEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC----CCCceEEEcCCCCEEEEEECCCCeE
Confidence 99999999999888632 369999999999887766542 56899999999999988774 9999
Q ss_pred EEEEcCCC
Q 043172 554 FLYKLNHY 561 (564)
Q Consensus 554 ~lw~l~~~ 561 (564)
++|++..+
T Consensus 426 ~v~~~~~~ 433 (433)
T 3bws_A 426 RVYRRDGF 433 (433)
T ss_dssp EEEEETTC
T ss_pred EEEEecCC
Confidence 99999764
No 103
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-31 Score=287.60 Aligned_cols=251 Identities=16% Similarity=0.158 Sum_probs=200.3
Q ss_pred CCCCCCeeEEEEcCC------CCEEEEEeCCCcEEEEEecCCCC---------ceeEEEEeCCcCeEEEEEeeCCCEEEE
Q 043172 259 ESSTGPINSVQFHRN------AQLLLVAGLDRRLRFFQIDGKRN---------TKIQSIFLEDCPVRKASFLPDGSQAII 323 (564)
Q Consensus 259 ~~h~~~V~~l~fspd------g~~l~s~s~dg~I~lwd~~~~~~---------~~~~~~~~~~~~I~~l~fspdg~~l~s 323 (564)
.+|.+.|++|+|+|+ +.+||+|+.||+|+||++..... .....+.+|..+|++++|+|+ ..|++
T Consensus 204 ~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~las 282 (524)
T 2j04_B 204 VHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVC 282 (524)
T ss_dssp EECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEE
T ss_pred EecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEE
Confidence 357789999999997 57999999999999999975421 123467789999999999986 48999
Q ss_pred EeCCCeEEEEECCCCceeeeccccccCCcceEEE--EEcCCC-CEEEEEeCCCeEEEEECCCCcEEEEee-ec--CcEEE
Q 043172 324 AGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFF--EVSPDS-SVIAFVGNEGYILLVSSKTKELIGTLK-MN--GTVRS 397 (564)
Q Consensus 324 ~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~--~~spdg-~~la~~~~dg~I~lwd~~t~~~~~~~~-~~--~~V~~ 397 (564)
|+.||+|++||+.++... ...+.+|.. .|.++ +|+|++ .+||+++.|++|+|||+++++.+..+. |. ..|.+
T Consensus 283 gs~DgtV~lWD~~~~~~~-~~~~~~H~~-~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~ 360 (524)
T 2j04_B 283 GFKNGFVAEFDLTDPEVP-SFYDQVHDS-YILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVP 360 (524)
T ss_dssp EETTSEEEEEETTBCSSC-SEEEECSSS-CEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCC
T ss_pred EeCCCEEEEEECCCCCCc-eEEeecccc-cEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccc
Confidence 999999999999876431 223455654 79998 578888 899999999999999999887766554 43 35889
Q ss_pred EEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCC-------
Q 043172 398 LAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGG------- 470 (564)
Q Consensus 398 l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~------- 470 (564)
++|+|++..|++++.|++|++||++++.++..+..+ ...|++++|+|+|++|++|+.||+|+||++......
T Consensus 361 v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH-~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~ 439 (524)
T 2j04_B 361 VVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSR-ETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSA 439 (524)
T ss_dssp EEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEEC-SSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC-----
T ss_pred eEeCCCcCeEEEeCCCCcEEEEECcccccceeeecC-CCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCcc
Confidence 999999999999999999999999999988777754 458999999999999999999999999986432100
Q ss_pred --------------------------------cceeeEEccccccceeEEEEcCCCc---EEEEEecCCCCeEEEEEcCC
Q 043172 471 --------------------------------KRKPIKTIENLTTKVDFMKFNNDAQ---ILAICSTMKKNSLKLIHIPS 515 (564)
Q Consensus 471 --------------------------------~~~~~~~~~~~~~~I~~l~fspdg~---~La~~s~~~d~~I~lwdl~s 515 (564)
....+.++.+|..+|++|+|+|+++ +||+|+. +|.|+||++.-
T Consensus 440 ~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~--~g~vrlw~l~~ 517 (524)
T 2j04_B 440 TQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNS--AGLLTLEYLSL 517 (524)
T ss_dssp -CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECT--TSEEEEEECSC
T ss_pred ceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhcc--CceEEEEEccc
Confidence 0122344567889999999999954 8999988 99999999863
No 104
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-30 Score=258.98 Aligned_cols=271 Identities=17% Similarity=0.158 Sum_probs=222.6
Q ss_pred cCCCeEEcCCCccCCCeeeeeeeecccCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCC-CCceeEEEEeCCcC
Q 043172 230 TDEDLVVKSSAKLSPGLLEYSRLIDANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGK-RNTKIQSIFLEDCP 308 (564)
Q Consensus 230 ~~~~~~~~~~~~l~~~~~d~~rl~~~~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~-~~~~~~~~~~~~~~ 308 (564)
..+.+++.++..-...+|++...........|...|++++|+|++.+|++|+.|+.|++|++... ....+..+..|..+
T Consensus 27 ~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~ 106 (313)
T 3odt_A 27 VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGN 106 (313)
T ss_dssp EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSC
T ss_pred cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccC
Confidence 44555555555555566776544444445578999999999999999999999999999998643 23456778889999
Q ss_pred eEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEE
Q 043172 309 VRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSP-DSSVIAFVGNEGYILLVSSKTKELIG 387 (564)
Q Consensus 309 I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~la~~~~dg~I~lwd~~t~~~~~ 387 (564)
|.+++| ++++|++++.++.|++|| .+.. ...+..|.. .+.++.|+| +++++++++.+|.|++|| ..+...
T Consensus 107 i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~--~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~ 177 (313)
T 3odt_A 107 VCSLSF--QDGVVISGSWDKTAKVWK--EGSL--VYNLQAHNA-SVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIK 177 (313)
T ss_dssp EEEEEE--ETTEEEEEETTSEEEEEE--TTEE--EEEEECCSS-CEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEE
T ss_pred EEEEEe--cCCEEEEEeCCCCEEEEc--CCcE--EEecccCCC-ceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEE
Confidence 999999 577999999999999999 3443 223444544 799999988 899999999999999999 445555
Q ss_pred Eee--ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 043172 388 TLK--MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQ 465 (564)
Q Consensus 388 ~~~--~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~ 465 (564)
.+. +...|.+++|+|++. |++++.+|.|++||+++++++..+..+. ..+++++|+|++ .|++|+.+|.|++||+.
T Consensus 178 ~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~ 254 (313)
T 3odt_A 178 TFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHE-SFVYCIKLLPNG-DIVSCGEDRTVRIWSKE 254 (313)
T ss_dssp EECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCS-SCEEEEEECTTS-CEEEEETTSEEEEECTT
T ss_pred EEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCC-ceEEEEEEecCC-CEEEEecCCEEEEEECC
Confidence 555 788999999999998 9999999999999999999988887544 479999999999 58899999999999999
Q ss_pred cccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceec
Q 043172 466 EFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFS 520 (564)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~ 520 (564)
.+ +++..+..|...|++++|+|++++ ++++. |+.|++|++.++....
T Consensus 255 ~~-----~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~--dg~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 255 NG-----SLKQVITLPAISIWSVDCMSNGDI-IVGSS--DNLVRIFSQEKSRWAS 301 (313)
T ss_dssp TC-----CEEEEEECSSSCEEEEEECTTSCE-EEEET--TSCEEEEESCGGGCCC
T ss_pred CC-----ceeEEEeccCceEEEEEEccCCCE-EEEeC--CCcEEEEeCCCCceee
Confidence 87 888899999999999999999984 55776 9999999998876654
No 105
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.1e-30 Score=269.02 Aligned_cols=245 Identities=15% Similarity=0.191 Sum_probs=192.7
Q ss_pred CCCCCCCeeEEEEcCCCCEEEEE-----------eCCCcEEEEEecCCCCce--eEEEE-----eCCcCeEEEEEeeCCC
Q 043172 258 DESSTGPINSVQFHRNAQLLLVA-----------GLDRRLRFFQIDGKRNTK--IQSIF-----LEDCPVRKASFLPDGS 319 (564)
Q Consensus 258 ~~~h~~~V~~l~fspdg~~l~s~-----------s~dg~I~lwd~~~~~~~~--~~~~~-----~~~~~I~~l~fspdg~ 319 (564)
..+|...|.+++++ +..+++| +.|+++++|++....... +.... .+...+.+++|||||+
T Consensus 69 l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~ 146 (365)
T 4h5i_A 69 LEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGT 146 (365)
T ss_dssp CCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSS
T ss_pred ccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCC
Confidence 45688889888765 4566665 457889999987543221 11111 1334588999999999
Q ss_pred EEEEEe--CCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee---ecCc
Q 043172 320 QAIIAG--RRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK---MNGT 394 (564)
Q Consensus 320 ~l~s~~--~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~---~~~~ 394 (564)
+|++++ .|++|+|||+.+++.... + .+. ..|.+++|+|+|++|++++. +.+.+|+..++..+.... |...
T Consensus 147 ~la~as~~~d~~i~iwd~~~~~~~~~--~-~~~-~~V~~v~fspdg~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (365)
T 4h5i_A 147 VAAIASSKVPAIMRIIDPSDLTEKFE--I-ETR-GEVKDLHFSTDGKVVAYITG-SSLEVISTVTGSCIARKTDFDKNWS 221 (365)
T ss_dssp CEEEEESCSSCEEEEEETTTTEEEEE--E-ECS-SCCCEEEECTTSSEEEEECS-SCEEEEETTTCCEEEEECCCCTTEE
T ss_pred EEEEEECCCCCEEEEeECCCCcEEEE--e-CCC-CceEEEEEccCCceEEeccc-eeEEEEEeccCcceeeeecCCCCCC
Confidence 987655 689999999999887543 3 233 36999999999999999885 456677777777654432 6778
Q ss_pred EEEEEEecCCCEEEEEeCCC----eEEEEECCCCceeE---EEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcc
Q 043172 395 VRSLAFADDGKQLLSSGGDG----QVYHWDLRTRTCIH---RAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEF 467 (564)
Q Consensus 395 V~~l~~spdg~~l~s~s~dg----~V~lwD~~~~~~~~---~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~ 467 (564)
|.+++|+|+++++++++.++ .+++|++....... .....+...|++++|+|+|++||+|+.|++|+|||+.++
T Consensus 222 v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~ 301 (365)
T 4h5i_A 222 LSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDL 301 (365)
T ss_dssp EEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTT
T ss_pred EEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCC
Confidence 99999999999999998887 68999988765422 112234457999999999999999999999999999987
Q ss_pred cCCcceeeEEc-cccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCC
Q 043172 468 LGGKRKPIKTI-ENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSY 516 (564)
Q Consensus 468 ~~~~~~~~~~~-~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~ 516 (564)
+++.++ .+|..+|++|+|+|||++||+||. |++||||+++..
T Consensus 302 -----~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~--D~tvrvw~ip~~ 344 (365)
T 4h5i_A 302 -----SMSKIFKQAHSFAITEVTISPDSTYVASVSA--ANTIHIIKLPLN 344 (365)
T ss_dssp -----EEEEEETTSSSSCEEEEEECTTSCEEEEEET--TSEEEEEECCTT
T ss_pred -----cEEEEecCcccCCEEEEEECCCCCEEEEEeC--CCeEEEEEcCCC
Confidence 888874 789999999999999999999999 999999999753
No 106
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.4e-30 Score=269.80 Aligned_cols=313 Identities=14% Similarity=0.141 Sum_probs=213.5
Q ss_pred CCCeEEcCCCccCCCeeeeeeeecccCC-------------CCCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEEecCCCC
Q 043172 231 DEDLVVKSSAKLSPGLLEYSRLIDANAD-------------ESSTGPINSVQFHR-NAQLLLVAGLDRRLRFFQIDGKRN 296 (564)
Q Consensus 231 ~~~~~~~~~~~l~~~~~d~~rl~~~~~~-------------~~h~~~V~~l~fsp-dg~~l~s~s~dg~I~lwd~~~~~~ 296 (564)
.+.+++.++..-...+|++......... .+|..+|++++|+| ++.+|++++.|+.|++|++...
T Consensus 55 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-- 132 (408)
T 4a11_B 55 EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTL-- 132 (408)
T ss_dssp TCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTT--
T ss_pred CCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCC--
Confidence 5666666555555566666532222221 35999999999999 7889999999999999999743
Q ss_pred ceeEEEEeCCcCeEEEEEeeC---CCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCC-EEEEEeCC
Q 043172 297 TKIQSIFLEDCPVRKASFLPD---GSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSS-VIAFVGNE 372 (564)
Q Consensus 297 ~~~~~~~~~~~~I~~l~fspd---g~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~-~la~~~~d 372 (564)
..+..+. +...+.+++|+|. +.++++++.++.|++||+.++.... .+.+|.. .|.+++|+|++. +|++++.+
T Consensus 133 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~--~~~~~~~-~v~~~~~~~~~~~ll~~~~~d 208 (408)
T 4a11_B 133 QTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSH--ILQGHRQ-EILAVSWSPRYDYILATASAD 208 (408)
T ss_dssp EEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCE--EECCCCS-CEEEEEECSSCTTEEEEEETT
T ss_pred ccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceee--eecCCCC-cEEEEEECCCCCcEEEEEcCC
Confidence 3444444 6778999999984 4599999999999999999887643 3455554 799999999998 58899999
Q ss_pred CeEEEEECCCCc-EEEEe----------------eecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeec--
Q 043172 373 GYILLVSSKTKE-LIGTL----------------KMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDE-- 433 (564)
Q Consensus 373 g~I~lwd~~t~~-~~~~~----------------~~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~-- 433 (564)
|.|++||++++. .+..+ .|...|.+++|+|++++|++++.||.|++||+.+++....+...
T Consensus 209 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 288 (408)
T 4a11_B 209 SRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVC 288 (408)
T ss_dssp SCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCC
T ss_pred CcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceecccccc
Confidence 999999998765 33333 26788999999999999999999999999999988765443321
Q ss_pred --CCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEE
Q 043172 434 --GCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLI 511 (564)
Q Consensus 434 --~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lw 511 (564)
....+........+..+++++.++.|++||+..+ .++..+.+|...|++++|+|++++|++++. |+.|++|
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~-----~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~--dg~i~iw 361 (408)
T 4a11_B 289 NNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSG-----EQITMLKGHYKTVDCCVFQSNFQELYSGSR--DCNILAW 361 (408)
T ss_dssp CCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTC-----CEEEEECCCSSCEEEEEEETTTTEEEEEET--TSCEEEE
T ss_pred ccccccceeEEecCCCceEEEEecCCEEEEEECcCC-----cceeeeccCCCeEEEEEEcCCCCEEEEECC--CCeEEEE
Confidence 1111112222234556777788999999999987 899999999999999999999999999999 9999999
Q ss_pred EcCCCceeccCCCCCCCCCCcEEEEEeC-CCCEEEEEcCCCeEEEEEcCCCC
Q 043172 512 HIPSYNVFSNWPPANRNLQYPRCLDFSP-GGGFMAVGNAAGKVFLYKLNHYH 562 (564)
Q Consensus 512 dl~s~~~~~~~~~~~~~~~~V~~l~fsp-dg~~Lasgs~dG~V~lw~l~~~~ 562 (564)
++.+++.+....... ....+.| ....+.+++.++.+++|+...|+
T Consensus 362 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~ 407 (408)
T 4a11_B 362 VPSLYEPVPDDDETT------TKSQLNPAFEDAWSSSDEEGGTSAWSHPQFE 407 (408)
T ss_dssp EECC------------------------------------------------
T ss_pred eCCCCCccCCCCceE------eccccccccceeecccCccCceeecCCcccC
Confidence 999887765433221 1122333 33345567788999999988765
No 107
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.98 E-value=2.2e-30 Score=272.72 Aligned_cols=253 Identities=14% Similarity=0.164 Sum_probs=211.7
Q ss_pred CCCCCeeEEEEcCC-CCEEEEEeCCCcEEEEEecC--------CCCceeEEEEeCCcCeEEEEEeeCCC-EEEEEeCCCe
Q 043172 260 SSTGPINSVQFHRN-AQLLLVAGLDRRLRFFQIDG--------KRNTKIQSIFLEDCPVRKASFLPDGS-QAIIAGRRKF 329 (564)
Q Consensus 260 ~h~~~V~~l~fspd-g~~l~s~s~dg~I~lwd~~~--------~~~~~~~~~~~~~~~I~~l~fspdg~-~l~s~~~dg~ 329 (564)
+|.+.|++++|+|+ +.+|++++.+|.|+||++.. .....+..+.+|...|.+++|+|++. +|++++.+|.
T Consensus 126 ~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 205 (430)
T 2xyi_A 126 NHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHT 205 (430)
T ss_dssp EESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSC
T ss_pred cCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCe
Confidence 48999999999997 78999999999999999975 22457788889999999999999988 9999999999
Q ss_pred EEEEECCCCcee-----eeccccccCCcceEEEEEcC-CCCEEEEEeCCCeEEEEECCCC---cEEEEee-ecCcEEEEE
Q 043172 330 FYSLDLVKAKAD-----KIGPLVGREEKSLEFFEVSP-DSSVIAFVGNEGYILLVSSKTK---ELIGTLK-MNGTVRSLA 399 (564)
Q Consensus 330 i~iwdl~~~~~~-----~~~~~~~~~~~~v~~~~~sp-dg~~la~~~~dg~I~lwd~~t~---~~~~~~~-~~~~V~~l~ 399 (564)
|++|++.++... ....+.+|. ..|.+++|+| ++.+|++++.+|.|++||++++ ..+..+. |...|++++
T Consensus 206 i~vwd~~~~~~~~~~~~~~~~~~~h~-~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~ 284 (430)
T 2xyi_A 206 ICLWDINATPKEHRVIDAKNIFTGHT-AVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLS 284 (430)
T ss_dssp EEEEETTSCCBGGGEEECSEEECCCS-SCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEE
T ss_pred EEEEeCCCCCCCCceeccceeecCCC-CCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEE
Confidence 999999874321 122233444 4799999999 6889999999999999999987 4566665 889999999
Q ss_pred EecCCC-EEEEEeCCCeEEEEECCC-CceeEEEeecCCcceEEEEECCCCC-EEEEEeCCCcEEEEeCCcccC-------
Q 043172 400 FADDGK-QLLSSGGDGQVYHWDLRT-RTCIHRAVDEGCINGTALCTSPDGT-FFAAGSDSGIVNVYNRQEFLG------- 469 (564)
Q Consensus 400 ~spdg~-~l~s~s~dg~V~lwD~~~-~~~~~~~~~~~~~~i~~l~~sp~g~-~lasgs~dg~V~iwd~~~~~~------- 469 (564)
|+|++. +|++|+.||.|++||+++ ..++..+..+ ...+++++|+|++. +|++++.||.|+|||+.....
T Consensus 285 ~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h-~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 363 (430)
T 2xyi_A 285 FNPYSEFILATGSADKTVALWDLRNLKLKLHSFESH-KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 363 (430)
T ss_dssp ECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECC-SSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHH
T ss_pred eCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecC-CCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcccc
Confidence 999887 688999999999999998 4556666544 45799999999985 799999999999999987311
Q ss_pred --CcceeeEEccccccceeEEEEcCCCc-EEEEEecCCCCeEEEEEcCCC
Q 043172 470 --GKRKPIKTIENLTTKVDFMKFNNDAQ-ILAICSTMKKNSLKLIHIPSY 516 (564)
Q Consensus 470 --~~~~~~~~~~~~~~~I~~l~fspdg~-~La~~s~~~d~~I~lwdl~s~ 516 (564)
..+..+..+.+|...|++++|+|++. +|++++. ++.|+||++...
T Consensus 364 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~--dg~i~iw~~~~~ 411 (430)
T 2xyi_A 364 EDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSE--DNIMQVWQMAEN 411 (430)
T ss_dssp HHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEET--TSEEEEEEECHH
T ss_pred ccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEEC--CCCEEEeEcccc
Confidence 11367778888999999999999999 8888887 999999999754
No 108
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.98 E-value=2.7e-29 Score=259.92 Aligned_cols=268 Identities=16% Similarity=0.204 Sum_probs=221.3
Q ss_pred CEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEE-EEeCCCeEEEEECCCCceeeeccccccCCcc
Q 043172 275 QLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAI-IAGRRKFFYSLDLVKAKADKIGPLVGREEKS 353 (564)
Q Consensus 275 ~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~-s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~ 353 (564)
.++++++.|+.|++|++.. ...+..+..|. .+.+++|+|+|++|+ +++.++.|++||+.+++.... +..+. .
T Consensus 3 ~l~vs~~~d~~v~v~d~~~--~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~--~~~~~--~ 75 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTS--NKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT--VPAGS--S 75 (391)
T ss_dssp EEEEEETTTTEEEEEETTT--TEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE--EECSS--S
T ss_pred EEEEEcCCCCEEEEEECCC--CeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEE--EECCC--C
Confidence 4678888999999999874 45666676664 589999999999874 555899999999999987543 33333 6
Q ss_pred eEEEEEcCCCCEEEEEe-CCCeEEEEECCCCcEEEEeeecCcEEEEEEecCCCEE-EEEeCCCeEEEEECCCCceeEEEe
Q 043172 354 LEFFEVSPDSSVIAFVG-NEGYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQL-LSSGGDGQVYHWDLRTRTCIHRAV 431 (564)
Q Consensus 354 v~~~~~spdg~~la~~~-~dg~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l-~s~s~dg~V~lwD~~~~~~~~~~~ 431 (564)
+.+++|+|++++|++++ .++.|++||+.+++.+..+.+...+.+++|+|+++.| ++++.++.|++||+.+++++..+.
T Consensus 76 v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~ 155 (391)
T 1l0q_A 76 PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS 155 (391)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred ccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEe
Confidence 89999999999886655 5699999999999999888877889999999999977 677779999999999998887776
Q ss_pred ecCCcceEEEEECCCCCEE-EEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecC-CCCeEE
Q 043172 432 DEGCINGTALCTSPDGTFF-AAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTM-KKNSLK 509 (564)
Q Consensus 432 ~~~~~~i~~l~~sp~g~~l-asgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~-~d~~I~ 509 (564)
.+. .+.+++|+|++++| ++++.++.|++||+... +.+..+. +...+.+++|+|+|++|++++.. .++.|+
T Consensus 156 ~~~--~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~-----~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~ 227 (391)
T 1l0q_A 156 VGR--SPKGIAVTPDGTKVYVANFDSMSISVIDTVTN-----SVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVS 227 (391)
T ss_dssp CCS--SEEEEEECTTSSEEEEEETTTTEEEEEETTTT-----EEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEE
T ss_pred cCC--CcceEEECCCCCEEEEEeCCCCEEEEEECCCC-----eEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEE
Confidence 543 46899999999987 57788999999999886 6666655 45688999999999999988831 289999
Q ss_pred EEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEE-EEEcCCCeEEEEEcCCC
Q 043172 510 LIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFM-AVGNAAGKVFLYKLNHY 561 (564)
Q Consensus 510 lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~L-asgs~dG~V~lw~l~~~ 561 (564)
+||+.+++....++.. ..+.+++|+|+|++| ++++.++.|++|++.+.
T Consensus 228 ~~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~ 276 (391)
T 1l0q_A 228 MIDTGTNKITARIPVG----PDPAGIAVTPDGKKVYVALSFXNTVSVIDTATN 276 (391)
T ss_dssp EEETTTTEEEEEEECC----SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred EEECCCCeEEEEEecC----CCccEEEEccCCCEEEEEcCCCCEEEEEECCCC
Confidence 9999998887766543 357899999999987 56788999999998764
No 109
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.98 E-value=6.3e-31 Score=276.78 Aligned_cols=249 Identities=12% Similarity=0.118 Sum_probs=197.9
Q ss_pred CCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCce---------eeeccccccC-----------CcceEEEEEcCCC-
Q 043172 305 EDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKA---------DKIGPLVGRE-----------EKSLEFFEVSPDS- 363 (564)
Q Consensus 305 ~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~---------~~~~~~~~~~-----------~~~v~~~~~spdg- 363 (564)
+..+|++++|+|+|++|++|+.+|.|+||++.++.. .....+.+|. ...|.+++|+|++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 568999999999999999999999999999987762 1133455664 1369999999998
Q ss_pred -CEEEEEeCCCeEEEEECCCCcEE---------------------------------------EEe--eecCcEEEEEEe
Q 043172 364 -SVIAFVGNEGYILLVSSKTKELI---------------------------------------GTL--KMNGTVRSLAFA 401 (564)
Q Consensus 364 -~~la~~~~dg~I~lwd~~t~~~~---------------------------------------~~~--~~~~~V~~l~~s 401 (564)
.+|++++.||.|++|++.++... ..+ .|...|.+++|+
T Consensus 107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 186 (447)
T 3dw8_B 107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN 186 (447)
T ss_dssp SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence 89999999999999999775442 122 288899999999
Q ss_pred cCCCEEEEEeCCCeEEEEECCC-CceeEEE------eecCCcceEEEEECCCC-CEEEEEeCCCcEEEEeCCcccCCcce
Q 043172 402 DDGKQLLSSGGDGQVYHWDLRT-RTCIHRA------VDEGCINGTALCTSPDG-TFFAAGSDSGIVNVYNRQEFLGGKRK 473 (564)
Q Consensus 402 pdg~~l~s~s~dg~V~lwD~~~-~~~~~~~------~~~~~~~i~~l~~sp~g-~~lasgs~dg~V~iwd~~~~~~~~~~ 473 (564)
|++++|+++ .|+.|++||+.+ +.++..+ ...+...+++++|+|++ .+|++|+.||.|+|||++.. .
T Consensus 187 ~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~-----~ 260 (447)
T 3dw8_B 187 SDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRAS-----A 260 (447)
T ss_dssp TTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTC-----S
T ss_pred CCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCC-----c
Confidence 999999998 799999999984 4444432 22445579999999998 99999999999999999886 4
Q ss_pred e----eEEcccccc------------ceeEEEEcCCCcEEEEEecCCCCeEEEEEcCC-CceeccCCCCCCCCC------
Q 043172 474 P----IKTIENLTT------------KVDFMKFNNDAQILAICSTMKKNSLKLIHIPS-YNVFSNWPPANRNLQ------ 530 (564)
Q Consensus 474 ~----~~~~~~~~~------------~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s-~~~~~~~~~~~~~~~------ 530 (564)
. +..+..|.. .|++++|+|+|++|++++. +.|+||++.+ +..+..+..+.....
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~---~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~ 337 (447)
T 3dw8_B 261 LCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY---LSVKVWDLNMENRPVETYQVHEYLRSKLCSLY 337 (447)
T ss_dssp SSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES---SEEEEEETTCCSSCSCCEESCGGGTTTHHHHH
T ss_pred cccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC---CeEEEEeCCCCccccceeeccccccccccccc
Confidence 3 667777765 8999999999999998874 8999999987 666655544321111
Q ss_pred ------CcEEEEEeCCCCEEEEEcCCCeEEEEEcCCCC
Q 043172 531 ------YPRCLDFSPGGGFMAVGNAAGKVFLYKLNHYH 562 (564)
Q Consensus 531 ------~V~~l~fspdg~~Lasgs~dG~V~lw~l~~~~ 562 (564)
.+..++|+|++.+|++|+.||.|+||++.+.+
T Consensus 338 ~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~ 375 (447)
T 3dw8_B 338 ENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKR 375 (447)
T ss_dssp HTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCC
T ss_pred cccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCc
Confidence 13359999999999999999999999997653
No 110
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.2e-30 Score=294.23 Aligned_cols=257 Identities=16% Similarity=0.153 Sum_probs=213.1
Q ss_pred EEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCC--CCEEEEEeCCCeEEE
Q 043172 300 QSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPD--SSVIAFVGNEGYILL 377 (564)
Q Consensus 300 ~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spd--g~~la~~~~dg~I~l 377 (564)
..+.+|.++|++++|+|+|++|++|+.+|.|++|++.++....+..+.+|.. .|.+++|+|+ +++|++++.||.|++
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~-~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEG-PVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSS-CEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcC-ceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 4567899999999999999999999999999999998665555556777765 7999999988 999999999999999
Q ss_pred EECCCCc--EEEEee-ecCcEEEEEEecC--CCEEEEEeCCCeEEEEECCCCceeE-EEeecCCcceEEEEECC------
Q 043172 378 VSSKTKE--LIGTLK-MNGTVRSLAFADD--GKQLLSSGGDGQVYHWDLRTRTCIH-RAVDEGCINGTALCTSP------ 445 (564)
Q Consensus 378 wd~~t~~--~~~~~~-~~~~V~~l~~spd--g~~l~s~s~dg~V~lwD~~~~~~~~-~~~~~~~~~i~~l~~sp------ 445 (564)
||+.+++ .+..+. |...|++++|+|+ +..|++++.||.|++||++++.... .....+...+.+++|+|
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~ 161 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC----
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccc
Confidence 9999987 444554 8899999999999 9999999999999999998873322 22234556799999999
Q ss_pred -------CCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCC---CcEEEEEecCCCCeEEEEEcCC
Q 043172 446 -------DGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNND---AQILAICSTMKKNSLKLIHIPS 515 (564)
Q Consensus 446 -------~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspd---g~~La~~s~~~d~~I~lwdl~s 515 (564)
++.+|++|+.||.|++||++... ....++..+.+|..+|++++|+|+ +.+|++++. |+.|++|++.+
T Consensus 162 ~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~-~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~--Dg~I~iwd~~~ 238 (753)
T 3jro_A 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDA-QTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ--DRTCIIWTQDN 238 (753)
T ss_dssp -----CGGGCCEEEEETTSCEEEEEEETTT-TEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEES--SSCEEEEEESS
T ss_pred cccccCCCCCEEEEEECCCeEEEEeccCCc-ccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEec--CCEEEEecCCC
Confidence 58999999999999999998641 122566778899999999999999 999999998 99999999988
Q ss_pred Cceec--cCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCC
Q 043172 516 YNVFS--NWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNH 560 (564)
Q Consensus 516 ~~~~~--~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~ 560 (564)
+.... .......+.+.|++++|+|+|.+|++|+.||.|++|++..
T Consensus 239 ~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 239 EQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp SSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred CCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 64221 1222344668899999999999999999999999999974
No 111
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=3e-30 Score=271.90 Aligned_cols=289 Identities=14% Similarity=0.237 Sum_probs=222.0
Q ss_pred ccCCCeEEcCCCccCCCeeeeeeeecccCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcC
Q 043172 229 RTDEDLVVKSSAKLSPGLLEYSRLIDANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCP 308 (564)
Q Consensus 229 ~~~~~~~~~~~~~l~~~~~d~~rl~~~~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~ 308 (564)
...+.+++.++..-...+|+...........+|.++|++++| ++.+|++|+.||+|++|++.. ...+..+..|...
T Consensus 140 ~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~--~~~~~~~~~h~~~ 215 (435)
T 1p22_A 140 QYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT--GEMLNTLIHHCEA 215 (435)
T ss_dssp ECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS--CCEEEEECCCCSC
T ss_pred EECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCC--CcEEEEEcCCCCc
Confidence 335666666555666667777655555566789999999999 788999999999999999974 4578888899999
Q ss_pred eEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeee-ccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE
Q 043172 309 VRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKI-GPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIG 387 (564)
Q Consensus 309 I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~-~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~ 387 (564)
|.+++|+ +..|++++.++.|++||+.++..... ..+.+|.. .|.+++| ++++|++++.||.|++||+.+++.+.
T Consensus 216 v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~-~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~ 290 (435)
T 1p22_A 216 VLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA-AVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVR 290 (435)
T ss_dssp EEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSS-CEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEE
T ss_pred EEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCC-cEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEE
Confidence 9999996 45999999999999999998765432 23445544 7889988 78899999999999999999999999
Q ss_pred Eee-ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCc
Q 043172 388 TLK-MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQE 466 (564)
Q Consensus 388 ~~~-~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~ 466 (564)
.+. |...|.+++|+ +.+|++|+.||.|++||+++++++..+..+. ..+.+++| ++.+|++|+.||.|+|||+..
T Consensus 291 ~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~ 365 (435)
T 1p22_A 291 TLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHE-ELVRCIRF--DNKRIVSGAYDGKIKVWDLVA 365 (435)
T ss_dssp EEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCS-SCEEEEEC--CSSEEEEEETTSCEEEEEHHH
T ss_pred EEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCc-CcEEEEEe--cCCEEEEEeCCCcEEEEECCC
Confidence 988 88899999995 6799999999999999999999988887544 46888888 788999999999999999976
Q ss_pred ccCC----cceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeC
Q 043172 467 FLGG----KRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSP 539 (564)
Q Consensus 467 ~~~~----~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fsp 539 (564)
.... ...++..+.+|...|++++| ++.+|++++. ||.|++|++.+.......+.. .++.++.|.+
T Consensus 366 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~--Dg~i~iwd~~~~~~~~~~~~~----~~~~~~~~~~ 434 (435)
T 1p22_A 366 ALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSH--DDTILIWDFLNDPAAQAEPPR----SPSRTYTYIS 434 (435)
T ss_dssp HTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCS--SSEEEEEC---------------------------
T ss_pred CCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeC--CCEEEEEECCCCCCcccCCCC----CCccceeeec
Confidence 5100 11178888999999999999 7888999998 999999999876654432221 3344555543
No 112
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.9e-30 Score=263.29 Aligned_cols=242 Identities=14% Similarity=0.129 Sum_probs=197.6
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccc
Q 043172 269 QFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVG 348 (564)
Q Consensus 269 ~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~ 348 (564)
.+.+++.+|++|+.||+|++|++... ..+..+. ...|.++.|+|. +++++.|+.|++|+...
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~--~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~----------- 104 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDS--KTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGN----------- 104 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSS--SCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTT-----------
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCC--cEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccC-----------
Confidence 34467889999999999999999744 3444444 356778888887 88899999999998653
Q ss_pred cCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee--ecCcEEEEEEec--CCCEEEEEeCCCeEEEEECCCC
Q 043172 349 REEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK--MNGTVRSLAFAD--DGKQLLSSGGDGQVYHWDLRTR 424 (564)
Q Consensus 349 ~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~--~~~~V~~l~~sp--dg~~l~s~s~dg~V~lwD~~~~ 424 (564)
.+.+|++.+++.+..+. |.+.|.+++|+| ++++|++++.||+|++||++++
T Consensus 105 -------------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~ 159 (343)
T 3lrv_A 105 -------------------------QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDD 159 (343)
T ss_dssp -------------------------EEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSS
T ss_pred -------------------------ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCC
Confidence 46678888888776665 667899999999 9999999999999999999999
Q ss_pred ceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceee-EEccc-cccceeEEEEcCCCcEEEEEec
Q 043172 425 TCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPI-KTIEN-LTTKVDFMKFNNDAQILAICST 502 (564)
Q Consensus 425 ~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~-~~~~~-~~~~I~~l~fspdg~~La~~s~ 502 (564)
+++.....++...+++++|+|++.+|++|+.||.|+|||+++. ..+ ..+.. |..+|++++|+|+|.+|++++.
T Consensus 160 ~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~-----~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~ 234 (343)
T 3lrv_A 160 SQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSP-----DQASSRFPVDEEAKIKEVKFADNGYWMVVECD 234 (343)
T ss_dssp CEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCT-----TSCCEECCCCTTSCEEEEEECTTSSEEEEEES
T ss_pred cEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC-----CCCccEEeccCCCCEEEEEEeCCCCEEEEEeC
Confidence 9876665555556899999999999999999999999999987 555 67777 9999999999999999999994
Q ss_pred CCCCeEEEEEcCCCceeccCCCCCCCCCCc--EEEEEeCCCCEEEEEcC-CCeEEEEEcCCC
Q 043172 503 MKKNSLKLIHIPSYNVFSNWPPANRNLQYP--RCLDFSPGGGFMAVGNA-AGKVFLYKLNHY 561 (564)
Q Consensus 503 ~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V--~~l~fspdg~~Lasgs~-dG~V~lw~l~~~ 561 (564)
+ .|++||+.+......+.....+...+ .+++|+|+|++|++++. ++.|+||++...
T Consensus 235 --~-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~ 293 (343)
T 3lrv_A 235 --Q-TVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKK 293 (343)
T ss_dssp --S-BEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred --C-eEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEccc
Confidence 4 99999999987766655533333333 46999999999999988 999999998543
No 113
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=1.3e-30 Score=264.18 Aligned_cols=249 Identities=11% Similarity=0.039 Sum_probs=206.1
Q ss_pred EeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCce-eeeccccccCCcceEEEEEcCCCC-EEEEEeCCCeEEEEEC
Q 043172 303 FLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKA-DKIGPLVGREEKSLEFFEVSPDSS-VIAFVGNEGYILLVSS 380 (564)
Q Consensus 303 ~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~-~~~~~~~~~~~~~v~~~~~spdg~-~la~~~~dg~I~lwd~ 380 (564)
..|...|.+++|+|++++|++++.++.|++|++.++.. .....+.+|. ..|.+++|+|+++ +|++++.+|.|++|++
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 86 (342)
T 1yfq_A 8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYK-HPLLCCNFIDNTDLQIYVGTVQGEILKVDL 86 (342)
T ss_dssp SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECS-SCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred cCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecC-CceEEEEECCCCCcEEEEEcCCCeEEEEEe
Confidence 36889999999999999999999999999999988761 1112233444 4799999999999 9999999999999999
Q ss_pred -CCCcEEEEee--ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCC---------CceeEEEeecCCcceEEEEECCCCC
Q 043172 381 -KTKELIGTLK--MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRT---------RTCIHRAVDEGCINGTALCTSPDGT 448 (564)
Q Consensus 381 -~t~~~~~~~~--~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~---------~~~~~~~~~~~~~~i~~l~~sp~g~ 448 (564)
.+++...... |...|.+++|+| +.+|++++.|+.|++||+++ ++++..+. +...+.+++|+|++
T Consensus 87 ~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~- 162 (342)
T 1yfq_A 87 IGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK--VKNKIFTMDTNSSR- 162 (342)
T ss_dssp SSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS--SCCCEEEEEECSSE-
T ss_pred ccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe--eCCceEEEEecCCc-
Confidence 8888755555 889999999999 99999999999999999987 66665554 44578999999887
Q ss_pred EEEEEeCCCcEEEEeCCc-ccCCcceeeEEccccccceeEEEEcC-CCcEEEEEecCCCCeEEEEEcCCC------ceec
Q 043172 449 FFAAGSDSGIVNVYNRQE-FLGGKRKPIKTIENLTTKVDFMKFNN-DAQILAICSTMKKNSLKLIHIPSY------NVFS 520 (564)
Q Consensus 449 ~lasgs~dg~V~iwd~~~-~~~~~~~~~~~~~~~~~~I~~l~fsp-dg~~La~~s~~~d~~I~lwdl~s~------~~~~ 520 (564)
|++++.+|.|++||+.. .. .........|...|.+++|+| ++++|++++. ++.|++|++... ....
T Consensus 163 -l~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~--dg~i~i~~~~~~~~~~~~~~~~ 236 (342)
T 1yfq_A 163 -LIVGMNNSQVQWFRLPLCED---DNGTIEESGLKYQIRDVALLPKEQEGYACSSI--DGRVAVEFFDDQGDDYNSSKRF 236 (342)
T ss_dssp -EEEEESTTEEEEEESSCCTT---CCCEEEECSCSSCEEEEEECSGGGCEEEEEET--TSEEEEEECCTTCCSTTCTTCE
T ss_pred -EEEEeCCCeEEEEECCcccc---ccceeeecCCCCceeEEEECCCCCCEEEEEec--CCcEEEEEEcCCCcccccccce
Confidence 99999999999999987 41 122334456788999999999 9999999998 999999999876 4443
Q ss_pred cCCCCC------CCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCCCC
Q 043172 521 NWPPAN------RNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNHYH 562 (564)
Q Consensus 521 ~~~~~~------~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~~~ 562 (564)
.+..+. .|.+.|++++|+|++++|++|+.||.|++|++.+.+
T Consensus 237 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 284 (342)
T 1yfq_A 237 AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK 284 (342)
T ss_dssp EEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTE
T ss_pred eeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHh
Confidence 333332 234589999999999999999999999999997643
No 114
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=7e-29 Score=256.75 Aligned_cols=283 Identities=11% Similarity=0.128 Sum_probs=221.4
Q ss_pred CCeeEEEEcCCCCEE-EEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEe-CCCeEEEEECCCCce
Q 043172 263 GPINSVQFHRNAQLL-LVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAG-RRKFFYSLDLVKAKA 340 (564)
Q Consensus 263 ~~V~~l~fspdg~~l-~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~-~dg~i~iwdl~~~~~ 340 (564)
..+.+++|+|++++| ++++.+++|++|++.. ...+..+..+. .+.+++|+|++++|++++ .++.|++||+.+++.
T Consensus 32 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~--~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~ 108 (391)
T 1l0q_A 32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTAT--NNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTV 108 (391)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEETTT--TEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred CCcceEEECCCCCEEEEECCCCCeEEEEECCC--CeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeE
Confidence 458999999999977 6677899999999874 44666666554 899999999999887665 569999999999887
Q ss_pred eeeccccccCCcceEEEEEcCCCCEE-EEEeCCCeEEEEECCCCcEEEEeeecCcEEEEEEecCCCEE-EEEeCCCeEEE
Q 043172 341 DKIGPLVGREEKSLEFFEVSPDSSVI-AFVGNEGYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQL-LSSGGDGQVYH 418 (564)
Q Consensus 341 ~~~~~~~~~~~~~v~~~~~spdg~~l-a~~~~dg~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l-~s~s~dg~V~l 418 (564)
... +..+. .+.+++|+|++++| ++++.++.|++||+.+++.+..+.....+.+++|+|+++.| ++++.++.|++
T Consensus 109 ~~~--~~~~~--~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~ 184 (391)
T 1l0q_A 109 AGT--VKTGK--SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISV 184 (391)
T ss_dssp EEE--EECSS--SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred EEE--EeCCC--CcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEE
Confidence 543 32322 58999999999987 57777999999999999999888877788999999999887 56677899999
Q ss_pred EECCCCceeEEEeecCCcceEEEEECCCCCEEEEEe---CCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCc
Q 043172 419 WDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGS---DSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQ 495 (564)
Q Consensus 419 wD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs---~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~ 495 (564)
||+++++++..+... ..+.+++|+|++++|++++ .++.|.+||+... +++..+..+. .+.+++|+|+|+
T Consensus 185 ~d~~~~~~~~~~~~~--~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~-----~~~~~~~~~~-~~~~~~~s~dg~ 256 (391)
T 1l0q_A 185 IDTVTNSVIDTVKVE--AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN-----KITARIPVGP-DPAGIAVTPDGK 256 (391)
T ss_dssp EETTTTEEEEEEECS--SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT-----EEEEEEECCS-SEEEEEECTTSS
T ss_pred EECCCCeEEEEEecC--CCccceEECCCCCEEEEEecCcCCCcEEEEECCCC-----eEEEEEecCC-CccEEEEccCCC
Confidence 999999887766543 3678999999999999888 6899999999886 7777777654 578999999999
Q ss_pred EEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEE------------EeCCC----------CEEEEEcCCCeE
Q 043172 496 ILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLD------------FSPGG----------GFMAVGNAAGKV 553 (564)
Q Consensus 496 ~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~------------fspdg----------~~Lasgs~dG~V 553 (564)
+|++++.. ++.|++|++.+++....++....+......+. |+.+. -.+...+.+..+
T Consensus 257 ~l~~s~~~-d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (391)
T 1l0q_A 257 KVYVALSF-XNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATE 335 (391)
T ss_dssp EEEEEETT-TTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSE
T ss_pred EEEEEcCC-CCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceE
Confidence 88555432 89999999999888776655433221111122 33221 235555678889
Q ss_pred EEEEcCCC
Q 043172 554 FLYKLNHY 561 (564)
Q Consensus 554 ~lw~l~~~ 561 (564)
++|++...
T Consensus 336 ~~W~~~~g 343 (391)
T 1l0q_A 336 WKWDFGDG 343 (391)
T ss_dssp EEEECSSS
T ss_pred EEEECCCC
Confidence 99998654
No 115
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=4e-29 Score=250.21 Aligned_cols=244 Identities=14% Similarity=0.199 Sum_probs=204.7
Q ss_pred CCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCC
Q 043172 258 DESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVK 337 (564)
Q Consensus 258 ~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~ 337 (564)
..+|...|++|+|+|++++|++|+.||+|+||++. ....+..+.+|...+.++ ++++..+++++.++.+.+|+...
T Consensus 63 ~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~--~~~~~~~~~~h~~~~~~~--~~~~~~l~s~~~~~~~~~~~~~~ 138 (318)
T 4ggc_A 63 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ--QQKRLRNMTSHSARVGSL--SWNSYILSSGSRSGHIHHHDVRV 138 (318)
T ss_dssp CCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETT--TTEEEEEEECCSSCEEEE--EEETTEEEEEETTSEEEEEETTS
T ss_pred ecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecC--CceeEEEecCccceEEEe--ecCCCEEEEEecCCceEeeecCC
Confidence 45788999999999999999999999999999987 456788888898877665 45678999999999999999887
Q ss_pred CceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE-----EEeeecCcEEEEEEecCCCEE---EE
Q 043172 338 AKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELI-----GTLKMNGTVRSLAFADDGKQL---LS 409 (564)
Q Consensus 338 ~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~-----~~~~~~~~V~~l~~spdg~~l---~s 409 (564)
.... +..+.+|.. .+..+.+++++++|++++.||.|++||+.+++.. ....+.+.|.+++++|++..+ ++
T Consensus 139 ~~~~-~~~~~~~~~-~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 216 (318)
T 4ggc_A 139 AEHH-VATLSGHSQ-EVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG 216 (318)
T ss_dssp SSCE-EEEEECCSS-CEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEE
T ss_pred Ccee-EEEEcCccC-ceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEe
Confidence 6542 334555554 7999999999999999999999999999887532 222267899999999976533 35
Q ss_pred EeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEe--CCCcEEEEeCCcccCCcceeeEEccccccceeE
Q 043172 410 SGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGS--DSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDF 487 (564)
Q Consensus 410 ~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs--~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~ 487 (564)
++.++.|++||............. ..+..++|+|.+..+++++ .||.|+|||+.++ +++.++.+|...|++
T Consensus 217 ~~~~~~i~lwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~-----~~~~~l~gH~~~V~~ 289 (318)
T 4ggc_A 217 GTSDRHIRIWNVCSGACLSAVDAH--SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM-----AKVAELKGHTSRVLS 289 (318)
T ss_dssp CTTTCEEEEEETTTCCEEEEEECS--SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC-----CEEEEECCCSSCEEE
T ss_pred cCCCCEEEEEecccccccccccce--eeeeeeeecccccceEEEEEcCCCEEEEEECCCC-----cEEEEEcCCCCCEEE
Confidence 567899999999988876655433 3578999999999887765 7999999999987 899999999999999
Q ss_pred EEEcCCCcEEEEEecCCCCeEEEEEcCCC
Q 043172 488 MKFNNDAQILAICSTMKKNSLKLIHIPSY 516 (564)
Q Consensus 488 l~fspdg~~La~~s~~~d~~I~lwdl~s~ 516 (564)
|+|+|+|++|++|+. |++|+||++...
T Consensus 290 l~~spdg~~l~S~s~--D~~v~iWd~~~~ 316 (318)
T 4ggc_A 290 LTMSPDGATVASAAA--DETLRLWRCFEL 316 (318)
T ss_dssp EEECTTSSCEEEEET--TTEEEEECCSCC
T ss_pred EEEcCCCCEEEEEec--CCeEEEEECCCC
Confidence 999999999999999 999999998654
No 116
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.2e-30 Score=275.65 Aligned_cols=288 Identities=13% Similarity=0.138 Sum_probs=215.7
Q ss_pred cccCCCeEEcCCCccCCCeeeeeeeecccCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCc
Q 043172 228 LRTDEDLVVKSSAKLSPGLLEYSRLIDANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDC 307 (564)
Q Consensus 228 l~~~~~~~~~~~~~l~~~~~d~~rl~~~~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~ 307 (564)
+.+.|.++++.+.+.... +.+... ...+|...|.+|+|+|+| .++.+.+|+..+. .+..+ .|..
T Consensus 23 ~SpDG~~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~---~~~~~-~~~~ 86 (588)
T 2j04_A 23 WARDGTLYLTTFPDISIG--QPKYAK---DINCNSKNLFHVKEFPLE-------FENKLDFELAQQN---GLLNS-QPVC 86 (588)
T ss_dssp ECTTSCEEEECSSSEEEE--EECCCS---CCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSS---CSSTT-SCSC
T ss_pred ECCCCCEEEEEcCCceee--cccccc---eecCCCccEEEEEECCCC-------CcceEEEEeCCCc---eEeec-CCCC
Confidence 555666776655444433 333332 336899999999999999 5677777754422 22222 3467
Q ss_pred CeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCC----cceEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 043172 308 PVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREE----KSLEFFEVSPDSSVIAFVGNEGYILLVSSKTK 383 (564)
Q Consensus 308 ~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~----~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~ 383 (564)
.|.+++|||+|.+|++++.+|.|++|+..+ . +..+. |+. ..+.+++|||+|++||+|+.||.|+||++.++
T Consensus 87 ~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~--l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~ 161 (588)
T 2j04_A 87 YPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--M--LTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKN 161 (588)
T ss_dssp CEEEEEECSSSSCEEEEETTSCEEEEETTE--E--EEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCC
T ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEeCCc--e--eeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCC
Confidence 899999999999999999999999999654 2 22233 332 35999999999999999999999999999988
Q ss_pred c-------EEEEee-----ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCce---eEEEeecCCcceEEEEECCCCC
Q 043172 384 E-------LIGTLK-----MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTC---IHRAVDEGCINGTALCTSPDGT 448 (564)
Q Consensus 384 ~-------~~~~~~-----~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~---~~~~~~~~~~~i~~l~~sp~g~ 448 (564)
. .+.++. |...|.+++|+|+| |++++.|++|++||+..+.. ...+...+...|.+++|+ |+
T Consensus 162 ~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~ 237 (588)
T 2j04_A 162 SENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DY 237 (588)
T ss_dssp TTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TT
T ss_pred ccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CC
Confidence 5 356653 56799999999999 88889999999999988774 244543455678999999 68
Q ss_pred EEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEE--cCCCcEEEEEecCCCCeEEEEEcCCCc---------
Q 043172 449 FFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKF--NNDAQILAICSTMKKNSLKLIHIPSYN--------- 517 (564)
Q Consensus 449 ~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~f--spdg~~La~~s~~~d~~I~lwdl~s~~--------- 517 (564)
+||+++ ++.|++||+... +......+|...|+.++| +|+++.|++++. +|+ ++|......
T Consensus 238 ~LASa~-~~tIkLWd~~~~-----~~~~~~~gh~~~V~~va~~~s~d~~~La~a~e--dG~-klw~~d~~~~spd~~l~a 308 (588)
T 2j04_A 238 KVVLTC-PGYVHKIDLKNY-----SISSLKTGSLENFHIIPLNHEKESTILLMSNK--TSY-KVLLEDELHVTADNIIAP 308 (588)
T ss_dssp EEEEEC-SSEEEEEETTTT-----EEEEEECSCCSCCCEEEETTCSSCEEEEECSS--CEE-EEEESSSEEEECCCSSHH
T ss_pred EEEEEe-CCeEEEEECCCC-----eEEEEEcCCCceEEEEEeeeCCCCCEEEEEcC--CCC-EEEeeccEEECCCceEEE
Confidence 999998 699999999875 443333379999999999 999999999998 889 999874211
Q ss_pred ----eeccCCCCCC------CCCCcEEEEEeCCCCEEEEEcC
Q 043172 518 ----VFSNWPPANR------NLQYPRCLDFSPGGGFMAVGNA 549 (564)
Q Consensus 518 ----~~~~~~~~~~------~~~~V~~l~fspdg~~Lasgs~ 549 (564)
.+..|..... +...|.+++|||+|+.+|+++.
T Consensus 309 ~~d~~v~lW~~~g~~l~~~~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 309 YLEKKFKKWSTIWNEFNNYETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp HHHHHHHHTTTTTTSSSSSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred EcCCEEEEEECCCCceeeeccceEEEEEEECCCCCEEEEEEe
Confidence 1122222111 1234899999999999998863
No 117
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=6.6e-30 Score=265.95 Aligned_cols=288 Identities=14% Similarity=0.078 Sum_probs=196.9
Q ss_pred CCeeEEEE---cCCCCEEEEEeCCCcEEEEEecCCCC--------ceeEEEEeCCcCeEEEEE-----------------
Q 043172 263 GPINSVQF---HRNAQLLLVAGLDRRLRFFQIDGKRN--------TKIQSIFLEDCPVRKASF----------------- 314 (564)
Q Consensus 263 ~~V~~l~f---spdg~~l~s~s~dg~I~lwd~~~~~~--------~~~~~~~~~~~~I~~l~f----------------- 314 (564)
....++.| +|++..|++++.++.|.+|+...... ..+.. ..+..++..+.|
T Consensus 16 ~~p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (393)
T 4gq1_A 16 VRPYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFT-IQTGLPTLHLSFSSSCSYSENLHDGDGNV 94 (393)
T ss_dssp CCEEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEE-EECSSCEEEEEECTTCEEECC--------
T ss_pred CCCeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEE-EecCCCeeeEeecCCccccccccCCCcce
Confidence 35566666 34455555556688899998743211 01111 123334444443
Q ss_pred ---eeCCCEEEEEeCCCeEEEEECCCCceee---eccccccCCcceEEEEEcC--------CCCEEEEEeCCCeEEEEEC
Q 043172 315 ---LPDGSQAIIAGRRKFFYSLDLVKAKADK---IGPLVGREEKSLEFFEVSP--------DSSVIAFVGNEGYILLVSS 380 (564)
Q Consensus 315 ---spdg~~l~s~~~dg~i~iwdl~~~~~~~---~~~~~~~~~~~v~~~~~sp--------dg~~la~~~~dg~I~lwd~ 380 (564)
++++.+|++++.|++|++||+.++.... +..+.+|.. .|.+++|+| ++++||+++.|++|+|||+
T Consensus 95 ~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~-~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~ 173 (393)
T 4gq1_A 95 NSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHN-FVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRL 173 (393)
T ss_dssp --CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSS-CEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEE
T ss_pred eecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCC-ceEEEEEccccccccCCCCCEEEEEECCCeEEEEEC
Confidence 4456689999999999999999886543 334667766 799999998 7899999999999999999
Q ss_pred CCCcEEEEee-ecCcEEEEEEecCC-CEEEEEeCCCeEEEEECCCCceeEEEe------------------------ecC
Q 043172 381 KTKELIGTLK-MNGTVRSLAFADDG-KQLLSSGGDGQVYHWDLRTRTCIHRAV------------------------DEG 434 (564)
Q Consensus 381 ~t~~~~~~~~-~~~~V~~l~~spdg-~~l~s~s~dg~V~lwD~~~~~~~~~~~------------------------~~~ 434 (564)
.++..+..+. |...|.+++|+|++ .+|++++.||+|++||+++++...... ..+
T Consensus 174 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 253 (393)
T 4gq1_A 174 TDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGI 253 (393)
T ss_dssp ETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CC
T ss_pred CCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccc
Confidence 8876665544 89999999999987 589999999999999999876543321 122
Q ss_pred CcceEEEEEC-CCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEcccccccee------------------EEEEcC--C
Q 043172 435 CINGTALCTS-PDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVD------------------FMKFNN--D 493 (564)
Q Consensus 435 ~~~i~~l~~s-p~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~------------------~l~fsp--d 493 (564)
...+.++.|+ |+++.|++++.|+.+++||+... .....+..|...+. .+.|+| +
T Consensus 254 ~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (393)
T 4gq1_A 254 ASSLANVRWIGSDGSGILAMCKSGAWLRWNLFAN-----NDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYM 328 (393)
T ss_dssp SSSCSEEEEETTTTCEEEEECTTSEEEEEEC------------------------CCSCSEEEECSSCCSSCCEECSSCT
T ss_pred cccceeeeeecCCCCEEEEEeCCCCEEEEECccC-----CCCceEeeecCccccEEEccccccccccCcceeEEEccCCC
Confidence 3346677776 89999999999999999999875 33333332322222 233333 3
Q ss_pred CcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCCCCC
Q 043172 494 AQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNHYHH 563 (564)
Q Consensus 494 g~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~~~~ 563 (564)
+.++++|+. |+.|+||++.++...... ..|...|++++|||+|++||+++.+| +.+|+|..+..
T Consensus 329 ~~~~~sgs~--Dg~V~lwd~~~~~~~~~~---~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~gf~~ 392 (393)
T 4gq1_A 329 DYFATAHSQ--HGLIQLINTYEKDSNSIP---IQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLMGFTR 392 (393)
T ss_dssp TEEEEEETT--TTEEEEEETTCTTCCEEE---EECSSCEEEEEECTTSSEEEEEESSE-EEEEEEGGGCC
T ss_pred CEEEEEECC--CCEEEEEECCCCcEEEEe---cCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEeCccc
Confidence 345566666 999999999988765533 23447899999999999999998766 88888866543
No 118
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.8e-28 Score=257.04 Aligned_cols=252 Identities=18% Similarity=0.172 Sum_probs=204.9
Q ss_pred CCCCCCeeEEEEcCCCCEE-EEEeCCCcEEEEEecCCCCceeEEEE--eCCcCeEEEEEeeCCCEEEEEeCCCeEEEEEC
Q 043172 259 ESSTGPINSVQFHRNAQLL-LVAGLDRRLRFFQIDGKRNTKIQSIF--LEDCPVRKASFLPDGSQAIIAGRRKFFYSLDL 335 (564)
Q Consensus 259 ~~h~~~V~~l~fspdg~~l-~s~s~dg~I~lwd~~~~~~~~~~~~~--~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl 335 (564)
.+|.+.|++++|+|++++| ++|+.||+|+||++.......+..+. .+...|.+++|+|++++|++++.++.+++|++
T Consensus 99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~ 178 (450)
T 2vdu_B 99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDI 178 (450)
T ss_dssp -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEec
Confidence 4688999999999999996 89999999999999822233445444 67789999999999999999999999999999
Q ss_pred CCCceee--eccccccCCcceEEEEEcCC---CCEEEEEeCCCeEEEEECCCCcEEEEee--ecCcEEEEEEecCCCEEE
Q 043172 336 VKAKADK--IGPLVGREEKSLEFFEVSPD---SSVIAFVGNEGYILLVSSKTKELIGTLK--MNGTVRSLAFADDGKQLL 408 (564)
Q Consensus 336 ~~~~~~~--~~~~~~~~~~~v~~~~~spd---g~~la~~~~dg~I~lwd~~t~~~~~~~~--~~~~V~~l~~spdg~~l~ 408 (564)
.++.... ...+.+|.. .|.+++|+|+ +++|++++.|+.|++||+.+++.+..+. |.+.|.+++|+ ++++|+
T Consensus 179 ~~~~~~~~~~~~~~~h~~-~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~ 256 (450)
T 2vdu_B 179 NSIPEEKFTQEPILGHVS-MLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLL 256 (450)
T ss_dssp TSCCCSSCCCCCSEECSS-CEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEE
T ss_pred CCcccccccceeeecccC-ceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEE
Confidence 8876532 224555554 7999999999 9999999999999999999998887743 88999999999 999999
Q ss_pred EEeCCCeEEEEECCCCceeEEEeec------------------------CCcceEEEEECCCCCEEEEEe-CCCcEEEEe
Q 043172 409 SSGGDGQVYHWDLRTRTCIHRAVDE------------------------GCINGTALCTSPDGTFFAAGS-DSGIVNVYN 463 (564)
Q Consensus 409 s~s~dg~V~lwD~~~~~~~~~~~~~------------------------~~~~i~~l~~sp~g~~lasgs-~dg~V~iwd 463 (564)
+++.|+.|++||+.+++++..+... ....+.+++|+|++++|++++ .++.|+||+
T Consensus 257 s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~ 336 (450)
T 2vdu_B 257 SAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILE 336 (450)
T ss_dssp EEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEE
T ss_pred EEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence 9999999999999999988877532 234678999999999999999 899999999
Q ss_pred C--CcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecC----CCCeEEEEEcCC
Q 043172 464 R--QEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTM----KKNSLKLIHIPS 515 (564)
Q Consensus 464 ~--~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~----~d~~I~lwdl~s 515 (564)
+ ... ....++..+..+ ..|.+++|+|++.++++++.. .++.|.+|.+..
T Consensus 337 ~~~~~~--~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 337 MSEKQK--GDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp ECSSST--TCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred eccCCC--CceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence 9 332 333667777777 889999999965444443321 145688887753
No 119
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=1e-28 Score=251.83 Aligned_cols=256 Identities=13% Similarity=0.085 Sum_probs=203.9
Q ss_pred CCceeEEEEeCCcCeEEEEEeeC---CCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeC
Q 043172 295 RNTKIQSIFLEDCPVRKASFLPD---GSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGN 371 (564)
Q Consensus 295 ~~~~~~~~~~~~~~I~~l~fspd---g~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~ 371 (564)
....+..+.+|...|++++|+|+ |++|++++.++.|++|++.+........+.+|.. .|.+++|+|++++|++++.
T Consensus 28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~s~~~ 106 (368)
T 3mmy_A 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTG-PVLDVCWSDDGSKVFTASC 106 (368)
T ss_dssp TTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSS-CEEEEEECTTSSEEEEEET
T ss_pred CcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccC-CEEEEEECcCCCEEEEEcC
Confidence 34456667789999999999998 6999999999999999999733222234555554 7999999999999999999
Q ss_pred CCeEEEEECCCCcEEEEeeecCcEEEEEE--ecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCE
Q 043172 372 EGYILLVSSKTKELIGTLKMNGTVRSLAF--ADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTF 449 (564)
Q Consensus 372 dg~I~lwd~~t~~~~~~~~~~~~V~~l~~--spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~ 449 (564)
||.|++||+.+++.+....|...|++++| +|++.+|++++.||.|++||+++++++..+..+. .+.++.+. +..
T Consensus 107 dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--~~~~~~~~--~~~ 182 (368)
T 3mmy_A 107 DKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE--RCYCADVI--YPM 182 (368)
T ss_dssp TSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS--CEEEEEEE--TTE
T ss_pred CCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC--CceEEEec--CCe
Confidence 99999999999998887779999999999 8899999999999999999999999888877554 34555554 458
Q ss_pred EEEEeCCCcEEEEeCCcccCCcceeeEEc-cccccceeEEEEcCCCcE----EEEEecCCCCeEEEEEcCCCce---ecc
Q 043172 450 FAAGSDSGIVNVYNRQEFLGGKRKPIKTI-ENLTTKVDFMKFNNDAQI----LAICSTMKKNSLKLIHIPSYNV---FSN 521 (564)
Q Consensus 450 lasgs~dg~V~iwd~~~~~~~~~~~~~~~-~~~~~~I~~l~fspdg~~----La~~s~~~d~~I~lwdl~s~~~---~~~ 521 (564)
+++++.++.+.+|++... ......+ ..+...+.++.+.++... +++++. ++.|++|++..... ...
T Consensus 183 ~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--dg~i~i~~~~~~~~~~~~~~ 256 (368)
T 3mmy_A 183 AVVATAERGLIVYQLENQ----PSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSI--EGRVAIHYINPPNPAKDNFT 256 (368)
T ss_dssp EEEEEGGGCEEEEECSSS----CEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEET--TSEEEEEESSCSCHHHHSEE
T ss_pred eEEEeCCCcEEEEEeccc----cchhhhccccccCCCceEEEcccCCCCCCeEEEecC--CCcEEEEecCCCCcccccee
Confidence 899999999999999864 1222222 234455666777666554 889988 99999999987632 222
Q ss_pred CCCCC---------CCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCCC
Q 043172 522 WPPAN---------RNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNHY 561 (564)
Q Consensus 522 ~~~~~---------~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~~ 561 (564)
+..+. .|...|++++|+|++++|++|+.||.|+||++.+.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~ 305 (368)
T 3mmy_A 257 FKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR 305 (368)
T ss_dssp EECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred eeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCC
Confidence 22221 11126999999999999999999999999999865
No 120
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=9.5e-29 Score=249.28 Aligned_cols=285 Identities=13% Similarity=0.157 Sum_probs=202.0
Q ss_pred cccCCCeEEcCCCccCCCeeeeeee----ecccCCCCCCCCeeEEEEcC--CCCEEEEEeCCCcEEEEEecCCCC-----
Q 043172 228 LRTDEDLVVKSSAKLSPGLLEYSRL----IDANADESSTGPINSVQFHR--NAQLLLVAGLDRRLRFFQIDGKRN----- 296 (564)
Q Consensus 228 l~~~~~~~~~~~~~l~~~~~d~~rl----~~~~~~~~h~~~V~~l~fsp--dg~~l~s~s~dg~I~lwd~~~~~~----- 296 (564)
+...+.+++.++..-...+|++... .......+|..+|++++|+| ++.+|++|+.||+|++|++.....
T Consensus 19 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~ 98 (351)
T 3f3f_A 19 YDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGR 98 (351)
T ss_dssp ECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSC
T ss_pred EcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCccccccc
Confidence 3445566665555555556665422 12233457999999999999 699999999999999999975432
Q ss_pred --ceeEEEEeCCcCeEEEEEeeC--CCEEEEEeCCCeEEEEECCCCceeeecc----------ccccCCcceEEEEEcCC
Q 043172 297 --TKIQSIFLEDCPVRKASFLPD--GSQAIIAGRRKFFYSLDLVKAKADKIGP----------LVGREEKSLEFFEVSPD 362 (564)
Q Consensus 297 --~~~~~~~~~~~~I~~l~fspd--g~~l~s~~~dg~i~iwdl~~~~~~~~~~----------~~~~~~~~v~~~~~spd 362 (564)
..+..+..|..+|.+++|+|+ +++|++++.++.|++||+.+++...... ....+...+.+++|+|+
T Consensus 99 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 178 (351)
T 3f3f_A 99 RWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPS 178 (351)
T ss_dssp SEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCC
T ss_pred CcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccC
Confidence 457778889999999999999 9999999999999999998876432211 11123347999999997
Q ss_pred ---CCEEEEEeCCCeEEEEECCCCcE--EEEee-ecCcEEEEEEecCC----CEEEEEeCCCeEEEEECCCCceeEEEee
Q 043172 363 ---SSVIAFVGNEGYILLVSSKTKEL--IGTLK-MNGTVRSLAFADDG----KQLLSSGGDGQVYHWDLRTRTCIHRAVD 432 (564)
Q Consensus 363 ---g~~la~~~~dg~I~lwd~~t~~~--~~~~~-~~~~V~~l~~spdg----~~l~s~s~dg~V~lwD~~~~~~~~~~~~ 432 (564)
+.+|++++.++.+.+|+...+.. +..+. |...|++++|+|++ ++|++++.||.|++||++.+........
T Consensus 179 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 258 (351)
T 3f3f_A 179 RFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEE 258 (351)
T ss_dssp SSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-------
T ss_pred CCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCC
Confidence 99999999999999998888775 44444 88899999999998 8999999999999999987655443322
Q ss_pred cCCcceEEEEECCCCCEEEEEe----CCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeE
Q 043172 433 EGCINGTALCTSPDGTFFAAGS----DSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSL 508 (564)
Q Consensus 433 ~~~~~i~~l~~sp~g~~lasgs----~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I 508 (564)
. .........++....++.+. ....+.+|+.... .++..+.+|...|++++|+|++++|++++. |+.|
T Consensus 259 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~--dg~v 330 (351)
T 3f3f_A 259 S-LTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQV-----ELLSEHDDHNGEVWSVSWNLTGTILSSAGD--DGKV 330 (351)
T ss_dssp ---------------------------------CCSEEE-----EEEEEECTTSSCEEEEEECSSSCCEEEEET--TSCE
T ss_pred c-ccceeccCCCcccccccccccccccceeeeecccccc-----cEEEEEecccccEEEEEEcCCCCEEEEecC--CCcE
Confidence 1 11223333344444444333 3445666666554 788889999999999999999999999998 9999
Q ss_pred EEEEcCCCceec
Q 043172 509 KLIHIPSYNVFS 520 (564)
Q Consensus 509 ~lwdl~s~~~~~ 520 (564)
+||++.++..+.
T Consensus 331 ~iw~~~~~~~~~ 342 (351)
T 3f3f_A 331 RLWKATYSNEFK 342 (351)
T ss_dssp EEEEECTTSCEE
T ss_pred EEEecCcCcchh
Confidence 999998876544
No 121
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=1e-27 Score=238.76 Aligned_cols=278 Identities=13% Similarity=0.133 Sum_probs=192.2
Q ss_pred eeEEEEcCCCC---EEEEEeCCCcEEEEEecCC-CCceeEEEEeCCcCeEEEEEeeCCCEEEEEe-CC---CeEEEEECC
Q 043172 265 INSVQFHRNAQ---LLLVAGLDRRLRFFQIDGK-RNTKIQSIFLEDCPVRKASFLPDGSQAIIAG-RR---KFFYSLDLV 336 (564)
Q Consensus 265 V~~l~fspdg~---~l~s~s~dg~I~lwd~~~~-~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~-~d---g~i~iwdl~ 336 (564)
|.++.|-.-+- .+++++ ..+|++|+.... +..+++++++|..+|..+.|.|+..-|+... .+ +.|+..-+.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~s 120 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCS 120 (356)
T ss_dssp EEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC-
T ss_pred EeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEEC
Confidence 56666665443 667776 578999998743 2378999999999999999999654433321 11 111111111
Q ss_pred CC--ceeeeccccccCCcceEEEEEcCCCCEEEEEe--CCCeEEEEEC-CCCcEEEEee-ecCcEEEEEEec---CCCEE
Q 043172 337 KA--KADKIGPLVGREEKSLEFFEVSPDSSVIAFVG--NEGYILLVSS-KTKELIGTLK-MNGTVRSLAFAD---DGKQL 407 (564)
Q Consensus 337 ~~--~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~--~dg~I~lwd~-~t~~~~~~~~-~~~~V~~l~~sp---dg~~l 407 (564)
.. ...+.....++ ...+..+ ++++++.+++ .++.|++|++ .+++.+..+. |...++.++|+| ++..|
T Consensus 121 pd~~~~~~~l~s~g~-~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~L 196 (356)
T 2w18_A 121 SDDESEKQVLLKSGN-IKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEAL 196 (356)
T ss_dssp -----CCEEEEEEEE-EEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEE
T ss_pred CCccccccEEEeCCC-eEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceE
Confidence 11 00111001121 1223332 5666666543 5899999999 4588877776 788888999998 77999
Q ss_pred EEEeCCCeEEEEECCCCceeEEEeecC--CcceEEEEECCCCCEE------------EEEeCCCcEEEEeCCcccCCcce
Q 043172 408 LSSGGDGQVYHWDLRTRTCIHRAVDEG--CINGTALCTSPDGTFF------------AAGSDSGIVNVYNRQEFLGGKRK 473 (564)
Q Consensus 408 ~s~s~dg~V~lwD~~~~~~~~~~~~~~--~~~i~~l~~sp~g~~l------------asgs~dg~V~iwd~~~~~~~~~~ 473 (564)
++++.|++|+|||+.++++++.+..++ ...+.+++|+|+|.++ ++|+.|++|++||..++ +
T Consensus 197 aSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tg-----k 271 (356)
T 2w18_A 197 LGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTT-----L 271 (356)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTT-----E
T ss_pred EEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCC-----E
Confidence 999999999999999999999987543 2356788999999876 56788999999999886 6
Q ss_pred eeEEc-----cccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCC-cEEEEEeCCCCEEEEE
Q 043172 474 PIKTI-----ENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQY-PRCLDFSPGGGFMAVG 547 (564)
Q Consensus 474 ~~~~~-----~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~-V~~l~fspdg~~Lasg 547 (564)
.+..+ .+|...+.+..+ ++.++|+++. |++|+|||+.+++.+..+.. |... +.+++|||+|++|++|
T Consensus 272 ~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~--DgTIkIWDl~tGk~l~tL~g---H~~~vvs~vafSPDG~~LaSG 344 (356)
T 2w18_A 272 SVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILT--SGTIAIWDLLLGQCTALLPP---VSDQHWSFVKWSGTDSHLLAG 344 (356)
T ss_dssp EEEEEEECCCTTCCCCEEEEEE--ETTEEEEEET--TSCEEEEETTTCSEEEEECC---C--CCCCEEEECSSSSEEEEE
T ss_pred EEEEEEeeccCCCcceeEcccc--CCCEEEEEcC--CCcEEEEECCCCcEEEEecC---CCCCeEEEEEECCCCCEEEEE
Confidence 65544 355555444444 4888999998 99999999999998887643 3343 4568999999999999
Q ss_pred cCCCeEEEEEcC
Q 043172 548 NAAGKVFLYKLN 559 (564)
Q Consensus 548 s~dG~V~lw~l~ 559 (564)
+.|++|+||++.
T Consensus 345 S~D~TIklWd~~ 356 (356)
T 2w18_A 345 QKDGNIFVYHYS 356 (356)
T ss_dssp CTTSCEEEEEEC
T ss_pred ECCCcEEEecCC
Confidence 999999999963
No 122
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=3.1e-28 Score=249.78 Aligned_cols=247 Identities=13% Similarity=0.139 Sum_probs=190.3
Q ss_pred ceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEE-EEeCCCeE
Q 043172 297 TKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIA-FVGNEGYI 375 (564)
Q Consensus 297 ~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la-~~~~dg~I 375 (564)
..+.....|..+|.+++|+|+|++|++|+.++ +++|++.++........ . .+..+++.++++.++ +++.++.|
T Consensus 10 ~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~d~~v 83 (355)
T 3vu4_A 10 NPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM---R--HLSKVRMLHRTNYVAFVTGVKEVV 83 (355)
T ss_dssp ---------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC---S--CCCEEEECTTSSEEEEECSSTTEE
T ss_pred CCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec---C--CeEEEEEcCCCCEEEEEECCccEE
Confidence 35556678999999999999999999887665 78999987765432211 1 367788999888885 56677899
Q ss_pred EEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCC-ceeEEEeecCCcceEEEEECCCCCEEEE--
Q 043172 376 LLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTR-TCIHRAVDEGCINGTALCTSPDGTFFAA-- 452 (564)
Q Consensus 376 ~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~las-- 452 (564)
++||+.+++.+..+.+...|.+++|+++. ++++ .++.|++||+.++ +.+..+.. ....+++++ .++++
T Consensus 84 ~iWd~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~----~~~~~~~s~--~~la~~s 154 (355)
T 3vu4_A 84 HIWDDVKKQDVSRIKVDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR----FGGVCEFSN--GLLVYSN 154 (355)
T ss_dssp EEEETTTTEEEEEEECSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE----EEEEEEEET--TEEEEEE
T ss_pred EEEECCCCcEEEEEECCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc----CCceEEEEc--cEEEEeC
Confidence 99999999999999988999999998764 4444 4789999999988 66665554 234556677 56666
Q ss_pred EeCCCcEEEEeCCcccC----------Cccee-eEEccccccceeEEEEcCCCcEEEEEecCCCCe-EEEEEcCCCceec
Q 043172 453 GSDSGIVNVYNRQEFLG----------GKRKP-IKTIENLTTKVDFMKFNNDAQILAICSTMKKNS-LKLIHIPSYNVFS 520 (564)
Q Consensus 453 gs~dg~V~iwd~~~~~~----------~~~~~-~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~-I~lwdl~s~~~~~ 520 (564)
|+.+|.|++||+..... ....| +..+.+|..+|++++|+|+|++|++|+. |++ |+|||+.+++.+.
T Consensus 155 g~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~--d~~~v~iwd~~~~~~~~ 232 (355)
T 3vu4_A 155 EFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQ--DGTIIRVFKTEDGVLVR 232 (355)
T ss_dssp SSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEET--TCSEEEEEETTTCCEEE
T ss_pred CCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeC--CCCEEEEEECCCCcEEE
Confidence 58899999999987410 00123 7888999999999999999999999999 998 9999999998887
Q ss_pred cCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCCC
Q 043172 521 NWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNHY 561 (564)
Q Consensus 521 ~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~~ 561 (564)
.+.. ..|.+.|++++|+|+|++|++|+.||+|+||++...
T Consensus 233 ~~~~-g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 233 EFRR-GLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp EEEC-TTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred EEEc-CCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence 6642 115588999999999999999999999999999754
No 123
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.1e-28 Score=249.42 Aligned_cols=270 Identities=11% Similarity=0.006 Sum_probs=199.9
Q ss_pred CCeEEcCCCccCCCeeeeeeeecccCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEE
Q 043172 232 EDLVVKSSAKLSPGLLEYSRLIDANADESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRK 311 (564)
Q Consensus 232 ~~~~~~~~~~l~~~~~d~~rl~~~~~~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~ 311 (564)
+.++++++..-...+|++..-....... ...|.++.|+|+ +++++.|++|++|+..+
T Consensus 48 ~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~------------------ 104 (343)
T 3lrv_A 48 KWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGN------------------ 104 (343)
T ss_dssp EEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTT------------------
T ss_pred CCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccC------------------
Confidence 3444444444445555554221111111 467889999998 99999999999998753
Q ss_pred EEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcC--CCCEEEEEeCCCeEEEEECCCCcEEEEe
Q 043172 312 ASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSP--DSSVIAFVGNEGYILLVSSKTKELIGTL 389 (564)
Q Consensus 312 l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~sp--dg~~la~~~~dg~I~lwd~~t~~~~~~~ 389 (564)
.+.+|++.++........ +|. ..|.+++|+| ++++|++++.||.|++||+.+++.+..+
T Consensus 105 -----------------~~~~~~~~~~~~~~~~~~-~~~-~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~ 165 (343)
T 3lrv_A 105 -----------------QITILDSKTNKVLREIEV-DSA-NEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVH 165 (343)
T ss_dssp -----------------EEEEEETTTCCEEEEEEC-CCS-SCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEE
T ss_pred -----------------ceEEeecCCcceeEEeec-CCC-CCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Confidence 466788888775433222 232 3799999999 9999999999999999999999987766
Q ss_pred e--ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCcee-EEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCc
Q 043172 390 K--MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCI-HRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQE 466 (564)
Q Consensus 390 ~--~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~-~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~ 466 (564)
. +...|++++|+|++.+|++|+.||.|++||+++++.+ ..+...|...|++++|+|++.+|++++ ++.|+|||++.
T Consensus 166 ~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~ 244 (343)
T 3lrv_A 166 SAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRK 244 (343)
T ss_dssp CCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTS
T ss_pred ecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCC
Confidence 4 5567999999999999999999999999999999887 666653556899999999999999999 45999999998
Q ss_pred ccCCcceeeEEcc---cccccee--EEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeC--
Q 043172 467 FLGGKRKPIKTIE---NLTTKVD--FMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSP-- 539 (564)
Q Consensus 467 ~~~~~~~~~~~~~---~~~~~I~--~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fsp-- 539 (564)
. .++..+. .|...+. +++|+|+|++|++++.. ++.|+||++....... .. ..+..++|+|
T Consensus 245 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~-d~~i~v~~~~~~~~~~--~~-----~~~~~~~~~~~~ 311 (343)
T 3lrv_A 245 D-----VGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNE-SNSLTIYKFDKKTKNW--TK-----DEESALCLQSDT 311 (343)
T ss_dssp S-----TTCBSSCCCBC-----CCEEEEECTTSSEEEEEETT-TTEEEEEEECTTTCSE--EE-----EEEEECCC----
T ss_pred C-----CcceeecccccccccccceEEEECCCCCEEEEecCC-CCcEEEEEEcccccce--Ee-----cCceeEecCccc
Confidence 6 4443333 2444444 69999999999998764 6899999996543211 11 3466788888
Q ss_pred -CCCEEEEEcCCCeEEEEE
Q 043172 540 -GGGFMAVGNAAGKVFLYK 557 (564)
Q Consensus 540 -dg~~Lasgs~dG~V~lw~ 557 (564)
++..|++++.||.+.++-
T Consensus 312 ~~~~~l~~~~~d~~~~~~~ 330 (343)
T 3lrv_A 312 ADFTDMDVVCGDGGIAAIL 330 (343)
T ss_dssp CCCCEEEEEEETTEEEEEE
T ss_pred cccceeEEEecCCceEEEE
Confidence 888888888888888764
No 124
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=9.6e-27 Score=244.08 Aligned_cols=285 Identities=14% Similarity=0.157 Sum_probs=222.9
Q ss_pred CCCCeeEEE---EcCCCCEEEEEe--------------CCCcEEEEEecC--CCCceeEEEEeCCcCeEEEEEeeCCCEE
Q 043172 261 STGPINSVQ---FHRNAQLLLVAG--------------LDRRLRFFQIDG--KRNTKIQSIFLEDCPVRKASFLPDGSQA 321 (564)
Q Consensus 261 h~~~V~~l~---fspdg~~l~s~s--------------~dg~I~lwd~~~--~~~~~~~~~~~~~~~I~~l~fspdg~~l 321 (564)
....+..++ |+|++..+++++ .++.+.||.++. .....+..+..+. .+.+++|+|++..+
T Consensus 59 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~ 137 (433)
T 3bws_A 59 KNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTGF-QPKSVRFIDNTRLA 137 (433)
T ss_dssp TTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECSS-CBCCCEESSSSEEE
T ss_pred cCCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCCC-CceEEEEeCCCeEE
Confidence 345677777 888777665433 233345666554 3334555565544 46699999966666
Q ss_pred EEEeCCCeEEEEECCCCceeeecc---ccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEE
Q 043172 322 IIAGRRKFFYSLDLVKAKADKIGP---LVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRS 397 (564)
Q Consensus 322 ~s~~~dg~i~iwdl~~~~~~~~~~---~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~ 397 (564)
++++.++.|++||+.+++...... +.+|. ..+.+++|+|++.++++++.++.|++||+.+++.+..+. |...+.+
T Consensus 138 ~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~ 216 (433)
T 3bws_A 138 IPLLEDEGMDVLDINSGQTVRLSPPEKYKKKL-GFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKI 216 (433)
T ss_dssp EEBTTSSSEEEEETTTCCEEEECCCHHHHTTC-CEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEE
T ss_pred EEeCCCCeEEEEECCCCeEeeecCcccccccC-CceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeE
Confidence 777778899999999988765332 23444 379999999999999999999999999999999988887 7789999
Q ss_pred EEEecCCCEEEEEe-CCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEe--------CCCcEEEEeCCccc
Q 043172 398 LAFADDGKQLLSSG-GDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGS--------DSGIVNVYNRQEFL 468 (564)
Q Consensus 398 l~~spdg~~l~s~s-~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs--------~dg~V~iwd~~~~~ 468 (564)
++|+|+++.+++++ .++.|++||+++++.+..+.... .+.+++|+|++++|++++ .+|.|++||+.++
T Consensus 217 ~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~- 293 (433)
T 3bws_A 217 LLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIG--LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKE- 293 (433)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCS--EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTT-
T ss_pred EEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCC--CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCC-
Confidence 99999999886555 78999999999998877665433 578999999999999888 5889999999876
Q ss_pred CCcceeeEEccccccceeEEEEcCCCcEEEEE-ecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEE
Q 043172 469 GGKRKPIKTIENLTTKVDFMKFNNDAQILAIC-STMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVG 547 (564)
Q Consensus 469 ~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~-s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasg 547 (564)
+.+..+ .+...+.+++|+|+++.|+++ +. ++.|++|++.+++....++. ...+.+++|+|+|++|+++
T Consensus 294 ----~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~--~~~v~v~d~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~~~ 362 (433)
T 3bws_A 294 ----KLIDTI-GPPGNKRHIVSGNTENKIYVSDMC--CSKIEVYDLKEKKVQKSIPV----FDKPNTIALSPDGKYLYVS 362 (433)
T ss_dssp ----EEEEEE-EEEECEEEEEECSSTTEEEEEETT--TTEEEEEETTTTEEEEEEEC----SSSEEEEEECTTSSEEEEE
T ss_pred ----cEEeec-cCCCCcceEEECCCCCEEEEEecC--CCEEEEEECCCCcEEEEecC----CCCCCeEEEcCCCCEEEEE
Confidence 555554 355688999999999866555 55 89999999999888776542 3668999999999999888
Q ss_pred cC---------------CCeEEEEEcCCC
Q 043172 548 NA---------------AGKVFLYKLNHY 561 (564)
Q Consensus 548 s~---------------dG~V~lw~l~~~ 561 (564)
+. ||.|++|++.+.
T Consensus 363 ~~~~~~~~~~~~~~g~~dg~v~~~d~~~~ 391 (433)
T 3bws_A 363 CRGPNHPTEGYLKKGLVLGKVYVIDTTTD 391 (433)
T ss_dssp ECCCCCTTTCTTSCCSSCCEEEEEETTTT
T ss_pred ecCCCccccccccccccceEEEEEECCCC
Confidence 76 579999998764
No 125
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=3.8e-28 Score=252.67 Aligned_cols=244 Identities=14% Similarity=0.094 Sum_probs=174.9
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCce---eEEEEeCCcCeEEEEEee--------CCCEEEEEeCCC
Q 043172 260 SSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTK---IQSIFLEDCPVRKASFLP--------DGSQAIIAGRRK 328 (564)
Q Consensus 260 ~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~---~~~~~~~~~~I~~l~fsp--------dg~~l~s~~~dg 328 (564)
.|...+....+++++.+|++|+.|++|+||++....... +..+.+|...|.+++|+| ++++|++++.|+
T Consensus 87 ~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~ 166 (393)
T 4gq1_A 87 LHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDC 166 (393)
T ss_dssp ----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTS
T ss_pred ccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCC
Confidence 355566666777788899999999999999998653222 223457999999999998 789999999999
Q ss_pred eEEEEECCCCceeeeccccccCCcceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEEEEe------------------
Q 043172 329 FFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDS-SVIAFVGNEGYILLVSSKTKELIGTL------------------ 389 (564)
Q Consensus 329 ~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg-~~la~~~~dg~I~lwd~~t~~~~~~~------------------ 389 (564)
+|+|||+.++... ..+.+|+. .+.+++|+|++ .+|++++.||.|++||+.+++.....
T Consensus 167 tv~~Wd~~~~~~~--~~~~~~~~-~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~ 243 (393)
T 4gq1_A 167 TLIIWRLTDEGPI--LAGYPLSS-PGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLP 243 (393)
T ss_dssp EEEEEEEETTEEE--EEEEECSS-CEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGG
T ss_pred eEEEEECCCCcee--eeecCCCC-CcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccc
Confidence 9999999877653 23455554 79999999987 47999999999999999887654322
Q ss_pred --------eecCcEEEEEEe-cCCCEEEEEeCCCeEEEEECCCCceeEEEeecCC-----------------cceEEEEE
Q 043172 390 --------KMNGTVRSLAFA-DDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGC-----------------INGTALCT 443 (564)
Q Consensus 390 --------~~~~~V~~l~~s-pdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~-----------------~~i~~l~~ 443 (564)
.|...+.++.|+ |+++.|++++.|+++++||+..+.....+..+.. .......+
T Consensus 244 ~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (393)
T 4gq1_A 244 LVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACP 323 (393)
T ss_dssp GC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEE
T ss_pred ceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEE
Confidence 144567888887 7999999999999999999987765544332110 01112334
Q ss_pred CC--CCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcC
Q 043172 444 SP--DGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIP 514 (564)
Q Consensus 444 sp--~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~ 514 (564)
+| ++.++++|+.||.|+|||+..+ .++..+..|..+|.+|+|+|||++||+++. +.+.+|.+.
T Consensus 324 ~~~~~~~~~~sgs~Dg~V~lwd~~~~-----~~~~~~~~~~~~V~svafspdG~~LA~as~---~Gv~lvrL~ 388 (393)
T 4gq1_A 324 HPRYMDYFATAHSQHGLIQLINTYEK-----DSNSIPIQLGMPIVDFCWHQDGSHLAIATE---GSVLLTRLM 388 (393)
T ss_dssp CSSCTTEEEEEETTTTEEEEEETTCT-----TCCEEEEECSSCEEEEEECTTSSEEEEEES---SEEEEEEEG
T ss_pred ccCCCCEEEEEECCCCEEEEEECCCC-----cEEEEecCCCCcEEEEEEcCCCCEEEEEeC---CCeEEEEEe
Confidence 43 3447788899999999999887 677777888999999999999999999984 567777764
No 126
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.96 E-value=4.6e-27 Score=254.51 Aligned_cols=296 Identities=13% Similarity=0.155 Sum_probs=228.5
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEee----CCCEEEEEe-CCCeEEEEECCCCc
Q 043172 265 INSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLP----DGSQAIIAG-RRKFFYSLDLVKAK 339 (564)
Q Consensus 265 V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fsp----dg~~l~s~~-~dg~i~iwdl~~~~ 339 (564)
+.+++|+|+|++|++++.+++|.+||+...+...+..+.. ...+..++|+| +|++|++++ .++.|.+||..+++
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~ 259 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE 259 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc
Confidence 8999999999999999999999999994334566777774 45679999999 999999988 58999999999988
Q ss_pred eeeeccccc--------cCCcceEEEEEcCCCCEE-EEEeCCCeEEEEECCCCcEEE--EeeecCcEEEEEEecCCCEEE
Q 043172 340 ADKIGPLVG--------REEKSLEFFEVSPDSSVI-AFVGNEGYILLVSSKTKELIG--TLKMNGTVRSLAFADDGKQLL 408 (564)
Q Consensus 340 ~~~~~~~~~--------~~~~~v~~~~~spdg~~l-a~~~~dg~I~lwd~~t~~~~~--~~~~~~~V~~l~~spdg~~l~ 408 (564)
+.......+ |....+..+.++|++..+ ++...++.|.+||+.+.+.+. .+.+...+.+++|+|+|++|+
T Consensus 260 ~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~ 339 (543)
T 1nir_A 260 PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFM 339 (543)
T ss_dssp EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEE
T ss_pred cceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEE
Confidence 766544322 223368899999977654 555678999999998866444 445666788999999999877
Q ss_pred EEe-CCCeEEEEECCCCceeEEEeec---CCcceEEEEECCC-CCEEEEEe-CCCcEEEEeCCccc--CCcceeeEEccc
Q 043172 409 SSG-GDGQVYHWDLRTRTCIHRAVDE---GCINGTALCTSPD-GTFFAAGS-DSGIVNVYNRQEFL--GGKRKPIKTIEN 480 (564)
Q Consensus 409 s~s-~dg~V~lwD~~~~~~~~~~~~~---~~~~i~~l~~sp~-g~~lasgs-~dg~V~iwd~~~~~--~~~~~~~~~~~~ 480 (564)
+++ .+++|.+||+.+++++..+... +......+ ++|+ +.++++++ .+++|.||++.... ....+.+.++..
T Consensus 340 va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~ 418 (543)
T 1nir_A 340 TAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQG 418 (543)
T ss_dssp EEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEEC
T ss_pred EEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEc
Confidence 665 5789999999999988877642 22122333 4677 66677775 57999999998710 011388999999
Q ss_pred cccceeEEEEcCCCcEEEEEecCC-----CCeEEEEEcCCCcee-ccCCC-----CCCCCCCcEEEEEeCCCCEEEEEc-
Q 043172 481 LTTKVDFMKFNNDAQILAICSTMK-----KNSLKLIHIPSYNVF-SNWPP-----ANRNLQYPRCLDFSPGGGFMAVGN- 548 (564)
Q Consensus 481 ~~~~I~~l~fspdg~~La~~s~~~-----d~~I~lwdl~s~~~~-~~~~~-----~~~~~~~V~~l~fspdg~~Lasgs- 548 (564)
|...+..|+|+|+|++|++++... +++|.|||+.+++.. ..++. ...+...+..+.|+|+|++|+++.
T Consensus 419 ~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~ 498 (543)
T 1nir_A 419 QGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVW 498 (543)
T ss_dssp SCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEE
T ss_pred CCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEee
Confidence 988899999999999999987211 569999999988765 33322 223457799999999999998763
Q ss_pred ----CCCeEEEEEcCCCC
Q 043172 549 ----AAGKVFLYKLNHYH 562 (564)
Q Consensus 549 ----~dG~V~lw~l~~~~ 562 (564)
.++.|.|||..+++
T Consensus 499 ~~~~~~~~i~v~D~~t~~ 516 (543)
T 1nir_A 499 NGKNDSSALVVVDDKTLK 516 (543)
T ss_dssp CCTTSCCEEEEEETTTTE
T ss_pred cCCCCCCeEEEEECCCce
Confidence 47999999998764
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=4e-26 Score=239.22 Aligned_cols=282 Identities=15% Similarity=0.106 Sum_probs=215.2
Q ss_pred CCCeeEEEEcCCCC-EEEEEe----CCC----cEEEEEe--cCCCCceeEEEEeCCcCeEEEEEee--------------
Q 043172 262 TGPINSVQFHRNAQ-LLLVAG----LDR----RLRFFQI--DGKRNTKIQSIFLEDCPVRKASFLP-------------- 316 (564)
Q Consensus 262 ~~~V~~l~fspdg~-~l~s~s----~dg----~I~lwd~--~~~~~~~~~~~~~~~~~I~~l~fsp-------------- 316 (564)
...|....|.+.|. ++++|+ .+| +|+|||+ ..+.......+.+|...+..+++++
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~ 141 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGA 141 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCC
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCc
Confidence 35788889988775 566776 467 8999999 6443222245778888888777765
Q ss_pred CCCEEEEEeCC------CeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCC---eEEEEECCCCcEEE
Q 043172 317 DGSQAIIAGRR------KFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEG---YILLVSSKTKELIG 387 (564)
Q Consensus 317 dg~~l~s~~~d------g~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg---~I~lwd~~t~~~~~ 387 (564)
.+..+++++.+ +.|++||+.++... .+.++.. .+.+++|+|+|++|++++.++ .|++||+.+++...
T Consensus 142 ~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~---~l~~~~~-~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~ 217 (415)
T 2hqs_A 142 FRTRIAYVVQTNGGQFPYELRVSDYDGYNQF---VVHRSPQ-PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ 217 (415)
T ss_dssp TTCEEEEEEECSSSSCCEEEEEEETTSCSCE---EEEEESS-CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE
T ss_pred CCCEEEEEEecCCCCccceEEEEcCCCCCCE---EEeCCCC-cceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE
Confidence 16677766644 79999999865532 2444544 799999999999999999875 99999999998876
Q ss_pred EeeecCcEEEEEEecCCCEEE-EEeCCC--eEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeC-CC--cEEE
Q 043172 388 TLKMNGTVRSLAFADDGKQLL-SSGGDG--QVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSD-SG--IVNV 461 (564)
Q Consensus 388 ~~~~~~~V~~l~~spdg~~l~-s~s~dg--~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~-dg--~V~i 461 (564)
...+.+.+.+++|+|+|+.|+ +++.++ .|++||+.++++. .+..+ ...+.+++|+|+|++|++++. +| .|.+
T Consensus 218 l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~-~l~~~-~~~~~~~~~spdg~~l~~~s~~~g~~~i~~ 295 (415)
T 2hqs_A 218 VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDG-RSNNTEPTWFPDSQNLAFTSDQAGRPQVYK 295 (415)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-ECCCC-SSCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred eecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE-eCcCC-CCcccceEECCCCCEEEEEECCCCCcEEEE
Confidence 555888999999999999888 555555 5999999988763 44433 346889999999999998886 45 6777
Q ss_pred EeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecC-CCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCC
Q 043172 462 YNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTM-KKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPG 540 (564)
Q Consensus 462 wd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~-~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspd 540 (564)
||+..+ . +..+..+...+.+++|+|+|++|++++.. .+..|++|++.++.... +.. + ..+.+++|+|+
T Consensus 296 ~d~~~~-----~-~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~-l~~---~-~~~~~~~~spd 364 (415)
T 2hqs_A 296 VNINGG-----A-PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LSS---T-FLDETPSLAPN 364 (415)
T ss_dssp EETTSS-----C-CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE-CCC---S-SSCEEEEECTT
T ss_pred EECCCC-----C-EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEE-ecC---C-CCcCCeEEcCC
Confidence 788764 2 34555567789999999999999988863 12589999999887643 222 2 27899999999
Q ss_pred CCEEEEEcCCC---eEEEEEcCC
Q 043172 541 GGFMAVGNAAG---KVFLYKLNH 560 (564)
Q Consensus 541 g~~Lasgs~dG---~V~lw~l~~ 560 (564)
|++|++++.++ .|++|++..
T Consensus 365 g~~l~~~s~~~~~~~l~~~d~~g 387 (415)
T 2hqs_A 365 GTMVIYSSSQGMGSVLNLVSTDG 387 (415)
T ss_dssp SSEEEEEEEETTEEEEEEEETTS
T ss_pred CCEEEEEEcCCCccEEEEEECCC
Confidence 99999888776 799999864
No 128
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.95 E-value=2e-25 Score=225.46 Aligned_cols=275 Identities=9% Similarity=0.133 Sum_probs=198.3
Q ss_pred EEEEEeCCCcEEEEEecCC-CCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCC-CeEEEEECC--CCceeeeccccccCC
Q 043172 276 LLLVAGLDRRLRFFQIDGK-RNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRR-KFFYSLDLV--KAKADKIGPLVGREE 351 (564)
Q Consensus 276 ~l~s~s~dg~I~lwd~~~~-~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~d-g~i~iwdl~--~~~~~~~~~~~~~~~ 351 (564)
++++++.++.|++|+++.. ....+.. ..+...+.+++|+|+|++|++++.+ +.|.+|++. ++....+..+..+.
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~- 84 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG- 84 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-
Confidence 3444477999999999642 2223333 3466788999999999999998876 899999998 66654444443332
Q ss_pred cceEEEEEcCCCCEEEEEeC-CCeEEEEEC---CCCcEEEEeeecCcEEEEEEecCCCEEEEEe-CCCeEEEEECCC-Cc
Q 043172 352 KSLEFFEVSPDSSVIAFVGN-EGYILLVSS---KTKELIGTLKMNGTVRSLAFADDGKQLLSSG-GDGQVYHWDLRT-RT 425 (564)
Q Consensus 352 ~~v~~~~~spdg~~la~~~~-dg~I~lwd~---~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s-~dg~V~lwD~~~-~~ 425 (564)
.+..++|+|++++|++++. ++.|.+|++ .+.+.+..+.....+.+++|+|++++|++++ .++.|++||+.+ ++
T Consensus 85 -~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~ 163 (343)
T 1ri6_A 85 -SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGH 163 (343)
T ss_dssp -CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred -CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCc
Confidence 5788999999998877765 789999999 4445555555556789999999999888887 789999999987 55
Q ss_pred eeE----EEeecCCcceEEEEECCCCCEEEEEe-CCCcEEEEeCCcccCCcceeeEEcc---cc---ccceeEEEEcCCC
Q 043172 426 CIH----RAVDEGCINGTALCTSPDGTFFAAGS-DSGIVNVYNRQEFLGGKRKPIKTIE---NL---TTKVDFMKFNNDA 494 (564)
Q Consensus 426 ~~~----~~~~~~~~~i~~l~~sp~g~~lasgs-~dg~V~iwd~~~~~~~~~~~~~~~~---~~---~~~I~~l~fspdg 494 (564)
... .+.......+..++|+|+++++++++ .++.|.+|++.... .....+..+. .. ...+..++|+|+|
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg 242 (343)
T 1ri6_A 164 LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPH-GNIECVQTLDMMPENFSDTRWAADIHITPDG 242 (343)
T ss_dssp EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTT-SCCEEEEEEECSCTTCCSCCCEEEEEECTTS
T ss_pred eeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCC-CcEEEEeeccccCccccccCCccceEECCCC
Confidence 432 22333334678899999999776554 78999999996421 1112222222 11 2356689999999
Q ss_pred cEEEEEecCCCCeEEEEEcC--C--CceeccCCCCCCCCCCcEEEEEeCCCCEEEEEc-CCCeEEEEEcC
Q 043172 495 QILAICSTMKKNSLKLIHIP--S--YNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGN-AAGKVFLYKLN 559 (564)
Q Consensus 495 ~~La~~s~~~d~~I~lwdl~--s--~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs-~dG~V~lw~l~ 559 (564)
++|+++... ++.|++|++. + ...+..++.. ..+.+++|+|+|++|++++ .++.|.+|++.
T Consensus 243 ~~l~v~~~~-~~~i~v~d~~~~~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 243 RHLYACDRT-ASLITVFSVSEDGSVLSKEGFQPTE----TQPRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp SEEEEEETT-TTEEEEEEECTTSCCEEEEEEEECS----SSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred CEEEEEecC-CCEEEEEEEcCCCCceEEeeeecCC----CccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 988866532 8999999998 2 3333333332 2378899999999988887 68999999664
No 129
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.95 E-value=4.6e-26 Score=226.95 Aligned_cols=186 Identities=10% Similarity=0.014 Sum_probs=141.4
Q ss_pred eCCCEEEEEe--CCCeEEEEECC-CCceeeeccccccCCcceEEEEEcC---CCCEEEEEeCCCeEEEEECCCCcEEEEe
Q 043172 316 PDGSQAIIAG--RRKFFYSLDLV-KAKADKIGPLVGREEKSLEFFEVSP---DSSVIAFVGNEGYILLVSSKTKELIGTL 389 (564)
Q Consensus 316 pdg~~l~s~~--~dg~i~iwdl~-~~~~~~~~~~~~~~~~~v~~~~~sp---dg~~la~~~~dg~I~lwd~~t~~~~~~~ 389 (564)
++|+.+.+++ .++.|++|++. +++... .+.+|.. .+..++|+| ++.+|++++.|++|+|||+.+++.+.++
T Consensus 143 ~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~--s~~~~~~-~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL 219 (356)
T 2w18_A 143 TKRRLVSSSGTLSDQQVEVMTFAEDGGGKE--NQFLMPP-EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKM 219 (356)
T ss_dssp TTTEEEEEESSSTTCEEEEEEECTTSCEEE--EEEECCC-SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CCCcEEEecccCCCCcEEEEEECCCCceee--eeccCCC-ceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEE
Confidence 4554454433 58888888884 365433 2334443 577888888 7899999999999999999999999999
Q ss_pred e-e---cCcEEEEEEecCCCEE------------EEEeCCCeEEEEECCCCceeEEEe----ecCCcceEEEEECCCCCE
Q 043172 390 K-M---NGTVRSLAFADDGKQL------------LSSGGDGQVYHWDLRTRTCIHRAV----DEGCINGTALCTSPDGTF 449 (564)
Q Consensus 390 ~-~---~~~V~~l~~spdg~~l------------~s~s~dg~V~lwD~~~~~~~~~~~----~~~~~~i~~l~~sp~g~~ 449 (564)
. | ...+.+++|+|+|.++ ++|+.|++|++||+.+++++..+. ..+...+.+..+ ++.+
T Consensus 220 ~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~ 297 (356)
T 2w18_A 220 HIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHC 297 (356)
T ss_dssp ECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTE
T ss_pred cCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCE
Confidence 7 3 2367888999999876 567789999999999998876552 222222333333 4789
Q ss_pred EEEEeCCCcEEEEeCCcccCCcceeeEEcccccccee-EEEEcCCCcEEEEEecCCCCeEEEEEc
Q 043172 450 FAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVD-FMKFNNDAQILAICSTMKKNSLKLIHI 513 (564)
Q Consensus 450 lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~-~l~fspdg~~La~~s~~~d~~I~lwdl 513 (564)
+|+|+.||+|+|||+.++ +.+.++.+|...+. .++|+|||++|++|+. |++|+||++
T Consensus 298 lASgS~DgTIkIWDl~tG-----k~l~tL~gH~~~vvs~vafSPDG~~LaSGS~--D~TIklWd~ 355 (356)
T 2w18_A 298 AAAILTSGTIAIWDLLLG-----QCTALLPPVSDQHWSFVKWSGTDSHLLAGQK--DGNIFVYHY 355 (356)
T ss_dssp EEEEETTSCEEEEETTTC-----SEEEEECCC--CCCCEEEECSSSSEEEEECT--TSCEEEEEE
T ss_pred EEEEcCCCcEEEEECCCC-----cEEEEecCCCCCeEEEEEECCCCCEEEEEEC--CCcEEEecC
Confidence 999999999999999998 89999998887655 6899999999999998 999999996
No 130
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.94 E-value=1.2e-24 Score=219.49 Aligned_cols=283 Identities=12% Similarity=0.153 Sum_probs=202.5
Q ss_pred EEEcCCCCE-EEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeC-CCeEEEEECCCCce-eeec
Q 043172 268 VQFHRNAQL-LLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGR-RKFFYSLDLVKAKA-DKIG 344 (564)
Q Consensus 268 l~fspdg~~-l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~-dg~i~iwdl~~~~~-~~~~ 344 (564)
..|.+++.+ +++++.++.|.+||+... ..+..+..+..++ +++|+|+|++|++++. ++.|++||+.+++. ...
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~--~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~- 78 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTL--EILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVA- 78 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTC--CEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEE-
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCccc--ceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEe-
Confidence 456666555 677778999999998744 4556666666666 9999999998887775 88999999998875 322
Q ss_pred cccccCCcceEEEEEcCCCCEEEEEeCCC---eEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEE-eCCCe-EEEE
Q 043172 345 PLVGREEKSLEFFEVSPDSSVIAFVGNEG---YILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSS-GGDGQ-VYHW 419 (564)
Q Consensus 345 ~~~~~~~~~v~~~~~spdg~~la~~~~dg---~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~-s~dg~-V~lw 419 (564)
+..+. .+..+++|+|+|++|+++..++ .|.+||+.+++.+..+.....+.+++|+|+|++|+++ ..++. |++|
T Consensus 79 -~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~ 156 (331)
T 3u4y_A 79 -IQEGQ-SSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRF 156 (331)
T ss_dssp -EEECS-SCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEE
T ss_pred -cccCC-CCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEE
Confidence 22222 2344499999999999554442 9999999999998888877778999999999866655 45577 9999
Q ss_pred ECCCCceeEEE---eecCCcceEEEEECCCCCEEEEE-eCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCc
Q 043172 420 DLRTRTCIHRA---VDEGCINGTALCTSPDGTFFAAG-SDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQ 495 (564)
Q Consensus 420 D~~~~~~~~~~---~~~~~~~i~~l~~sp~g~~lasg-s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~ 495 (564)
++.....+... ..........++|+|+|++++++ ..++.|.+||+.++ ....++..+.. ...+..++|+|+|+
T Consensus 157 ~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~--~~~~~~~~~~~-~~~~~~~~~spdg~ 233 (331)
T 3u4y_A 157 KIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNP--ENITLLNAVGT-NNLPGTIVVSRDGS 233 (331)
T ss_dssp EECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSST--TSCEEEEEEEC-SSCCCCEEECTTSS
T ss_pred EECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCC--cccceeeeccC-CCCCceEEECCCCC
Confidence 99864433111 11223356899999999966554 56899999999876 11112666653 46678999999999
Q ss_pred EEEEEecCCCCeEEEEEcCCCce--eccCC----CCCCCCCCcEEEEEeCCCCEEEEEc-CCCeEEEEEcCC
Q 043172 496 ILAICSTMKKNSLKLIHIPSYNV--FSNWP----PANRNLQYPRCLDFSPGGGFMAVGN-AAGKVFLYKLNH 560 (564)
Q Consensus 496 ~La~~s~~~d~~I~lwdl~s~~~--~~~~~----~~~~~~~~V~~l~fspdg~~Lasgs-~dG~V~lw~l~~ 560 (564)
+|++++.. ++.|.+|++.+++. +..++ ....+...+.+++|+|+|++|++++ .++.|.+|++..
T Consensus 234 ~l~v~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~ 304 (331)
T 3u4y_A 234 TVYVLTES-TVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISG 304 (331)
T ss_dssp EEEEECSS-EEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTS
T ss_pred EEEEEEcC-CCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecC
Confidence 88777653 67899999998877 22221 1122223346799999999886555 567999999875
No 131
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.94 E-value=1.7e-24 Score=234.38 Aligned_cols=277 Identities=9% Similarity=0.073 Sum_probs=214.3
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEEC--CCCceeeeccc
Q 043172 269 QFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDL--VKAKADKIGPL 346 (564)
Q Consensus 269 ~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl--~~~~~~~~~~~ 346 (564)
+|+|++.++++++.+++|.+||.. +...+..+..+.. ++.++|+|+|++|++++.++.|.+||+ .++++.. .+
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~--t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~--~i 218 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGD--SKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVA--EI 218 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETT--TCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEE--EE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECC--CceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEE--EE
Confidence 389999999999999999999887 4457777774433 889999999999999999999999999 7776643 33
Q ss_pred cccCCcceEEEEEcC----CCCEEEEEeC-CCeEEEEECCCCcEEEEeee------------cCcEEEEEEecCCCE-EE
Q 043172 347 VGREEKSLEFFEVSP----DSSVIAFVGN-EGYILLVSSKTKELIGTLKM------------NGTVRSLAFADDGKQ-LL 408 (564)
Q Consensus 347 ~~~~~~~v~~~~~sp----dg~~la~~~~-dg~I~lwd~~t~~~~~~~~~------------~~~V~~l~~spdg~~-l~ 408 (564)
... ..+..++|+| +|+++++++. ++.|.+||..+++++..+.. ...+.++.++|++.. ++
T Consensus 219 ~~g--~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~v 296 (543)
T 1nir_A 219 KIG--IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIV 296 (543)
T ss_dssp ECC--SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEE
T ss_pred ecC--CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEE
Confidence 322 2578999999 9999999885 89999999999999888762 126899999997765 45
Q ss_pred EEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEe-CCCcEEEEeCCcccCCcceeeEEccc----ccc
Q 043172 409 SSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGS-DSGIVNVYNRQEFLGGKRKPIKTIEN----LTT 483 (564)
Q Consensus 409 s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs-~dg~V~iwd~~~~~~~~~~~~~~~~~----~~~ 483 (564)
+...++.|.+||+.+.+.+..........+..++|+|+|++|++++ .+++|.+||..++ +.+.++.. |..
T Consensus 297 s~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg-----~l~~~i~~g~~ph~g 371 (543)
T 1nir_A 297 NVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR-----RLSALVDVGKTPHPG 371 (543)
T ss_dssp EETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT-----EEEEEEECSSSBCCT
T ss_pred EECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCC-----eEEEeeccCCCCCCC
Confidence 5667899999999887655422222233567899999999876554 5889999999987 77776653 443
Q ss_pred ceeEEEEcCC-CcEEEEEecCCCCeEEEEEcCC-------CceeccCCCCCCCCCCcEEEEEeCCCCEEEEEc-------
Q 043172 484 KVDFMKFNND-AQILAICSTMKKNSLKLIHIPS-------YNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGN------- 548 (564)
Q Consensus 484 ~I~~l~fspd-g~~La~~s~~~d~~I~lwdl~s-------~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs------- 548 (564)
....+ ++|+ |.++++++. .+++|.+|++.+ +++++.++.+. +.+..++|+|+|++|++++
T Consensus 372 ~g~~~-~~p~~g~~~~s~~~-~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g---~~~~~v~~~pdg~~l~v~~~~~~~~~ 446 (543)
T 1nir_A 372 RGANF-VHPKYGPVWSTSHL-GDGSISLIGTDPKNHPQYAWKKVAELQGQG---GGSLFIKTHPKSSHLYVDTTFNPDAR 446 (543)
T ss_dssp TCEEE-EETTTEEEEEEEBS-SSSEEEEEECCTTTCTTTBTSEEEEEECSC---SCCCCEECCTTCCEEEECCTTCSSHH
T ss_pred CCccc-CCCCCccEEEeccC-CCceEEEEEeCCCCCchhcCeEEEEEEcCC---CCceEEEcCCCCCcEEEecCCCCCcc
Confidence 33333 4787 555555542 279999999988 77777665543 5577899999999999987
Q ss_pred CCCeEEEEEcCCCC
Q 043172 549 AAGKVFLYKLNHYH 562 (564)
Q Consensus 549 ~dG~V~lw~l~~~~ 562 (564)
.+++|.|||+.+++
T Consensus 447 ~~~~v~v~d~~~~~ 460 (543)
T 1nir_A 447 ISQSVAVFDLKNLD 460 (543)
T ss_dssp HHTCEEEEETTCTT
T ss_pred cCceEEEEECCCCC
Confidence 26799999998875
No 132
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.94 E-value=8.1e-24 Score=214.95 Aligned_cols=275 Identities=13% Similarity=0.084 Sum_probs=215.1
Q ss_pred CCCCeeEEEEcCCCCEEEEEeC-------CCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEe-CCCeEEE
Q 043172 261 STGPINSVQFHRNAQLLLVAGL-------DRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAG-RRKFFYS 332 (564)
Q Consensus 261 h~~~V~~l~fspdg~~l~s~s~-------dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~-~dg~i~i 332 (564)
....+..++|+|++++|++++. ++.|.+||..+ ...+..+... ..+..++|+|+|+++++++ .++.|.+
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~--~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~ 115 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVT--LEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTA 115 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTT--CCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCC--CeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEE
Confidence 3457889999999999888874 45799998774 4455666543 4578899999999777665 5789999
Q ss_pred EECCCCceeeeccccccCC------cceEEEEEcCCCCEEEEEe--CCCeEEEEECCCCcEEEEee-ecCcEEEEEEecC
Q 043172 333 LDLVKAKADKIGPLVGREE------KSLEFFEVSPDSSVIAFVG--NEGYILLVSSKTKELIGTLK-MNGTVRSLAFADD 403 (564)
Q Consensus 333 wdl~~~~~~~~~~~~~~~~------~~v~~~~~spdg~~la~~~--~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spd 403 (564)
||+.+++............ ..+.+++|+|+|+++++++ .++.|.+||+.+++.+..+. +...+.+++|+|+
T Consensus 116 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d 195 (353)
T 3vgz_A 116 IDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSE 195 (353)
T ss_dssp EETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETT
T ss_pred EeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCC
Confidence 9999998755433321110 1268899999999888776 47899999999999998887 5666899999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeEEEeec---CCcceEEEEECCCCCEEEEEeC-CCcEEEEeCCcccCCcceeeEEcc
Q 043172 404 GKQLLSSGGDGQVYHWDLRTRTCIHRAVDE---GCINGTALCTSPDGTFFAAGSD-SGIVNVYNRQEFLGGKRKPIKTIE 479 (564)
Q Consensus 404 g~~l~s~s~dg~V~lwD~~~~~~~~~~~~~---~~~~i~~l~~sp~g~~lasgs~-dg~V~iwd~~~~~~~~~~~~~~~~ 479 (564)
+++|++++.++.|.+||+.+++.+..+... ....+..++|+|+++++++++. ++.|.+||..++ +.+..+.
T Consensus 196 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~-----~~~~~~~ 270 (353)
T 3vgz_A 196 GKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG-----NILAKVA 270 (353)
T ss_dssp TTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC-----CEEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC-----cEEEEEE
Confidence 999999999999999999999888776642 2334678999999997776665 599999999876 6666655
Q ss_pred ccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCC
Q 043172 480 NLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAA 550 (564)
Q Consensus 480 ~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~d 550 (564)
... ...++|+|+|++|++++.. ++.|.+||+.+++....++.. ..+.+++|+|+|++|++++..
T Consensus 271 ~~~--~~~~~~s~dg~~l~v~~~~-~~~v~~~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 271 APE--SLAVLFNPARNEAYVTHRQ-AGKVSVIDAKSYKVVKTFDTP----THPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp CSS--CCCEEEETTTTEEEEEETT-TTEEEEEETTTTEEEEEEECC----SEEEEEEECTTSCEEEEEEEC
T ss_pred cCC--CceEEECCCCCEEEEEECC-CCeEEEEECCCCeEEEEEecC----CCCCeEEEcCCCCEEEEEEcc
Confidence 332 3579999999987777643 799999999999888766543 457899999999988777655
No 133
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=5.7e-25 Score=230.42 Aligned_cols=262 Identities=13% Similarity=0.100 Sum_probs=200.9
Q ss_pred CCCCCCeeEEEEcC--------------CCCEEEEEeCC------CcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCC
Q 043172 259 ESSTGPINSVQFHR--------------NAQLLLVAGLD------RRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDG 318 (564)
Q Consensus 259 ~~h~~~V~~l~fsp--------------dg~~l~s~s~d------g~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg 318 (564)
.+|...|.++++++ .+..+++++.+ +.|++||+++. ....+..|...|.+++|+|+|
T Consensus 114 ~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~---~~~~l~~~~~~v~~~~~Spdg 190 (415)
T 2hqs_A 114 KVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGY---NQFVVHRSPQPLMSPAWSPDG 190 (415)
T ss_dssp EECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSC---SCEEEEEESSCEEEEEECTTS
T ss_pred EcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCC---CCEEEeCCCCcceeeEEcCCC
Confidence 45666777777765 15566666554 79999999753 356677788999999999999
Q ss_pred CEEEEEeCCC---eEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEE-EEeCCC--eEEEEECCCCcEEEEeeec
Q 043172 319 SQAIIAGRRK---FFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIA-FVGNEG--YILLVSSKTKELIGTLKMN 392 (564)
Q Consensus 319 ~~l~s~~~dg---~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la-~~~~dg--~I~lwd~~t~~~~~~~~~~ 392 (564)
++|++++.++ .|++||+.+++... +..+.. .+.+++|+|+|++|+ +++.++ .|++||+.+++......+.
T Consensus 191 ~~la~~s~~~~~~~i~~~d~~tg~~~~---l~~~~~-~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~ 266 (415)
T 2hqs_A 191 SKLAYVTFESGRSALVIQTLANGAVRQ---VASFPR-HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGR 266 (415)
T ss_dssp SEEEEEECTTSSCEEEEEETTTCCEEE---EECCSS-CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCS
T ss_pred CEEEEEEecCCCcEEEEEECCCCcEEE---eecCCC-cccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCC
Confidence 9999998775 99999999988754 333333 689999999999888 455444 5999999998875444478
Q ss_pred CcEEEEEEecCCCEEEEEeC-CC--eEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCC---CcEEEEeCCc
Q 043172 393 GTVRSLAFADDGKQLLSSGG-DG--QVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDS---GIVNVYNRQE 466 (564)
Q Consensus 393 ~~V~~l~~spdg~~l~s~s~-dg--~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~d---g~V~iwd~~~ 466 (564)
..+.+++|+|+|+.|++++. ++ .|++||+.++... .+..+ ...+.+++|+|+|++|++++.+ +.|.+||+.+
T Consensus 267 ~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~~-~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~ 344 (415)
T 2hqs_A 267 SNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWE-GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT 344 (415)
T ss_dssp SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCS-SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT
T ss_pred CcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE-EEecC-CCcccCeEECCCCCEEEEEECcCCceEEEEEECCC
Confidence 88999999999999988876 44 7888899887643 33333 3367889999999999988764 5899999987
Q ss_pred ccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCC---eEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCC
Q 043172 467 FLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKN---SLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGG 542 (564)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~---~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~ 542 (564)
+ .. ..+..+. .+.+++|+|+|++|++++. ++ .|++|++.... ...++ .+.+.|.+++|+|.-.
T Consensus 345 ~-----~~-~~l~~~~-~~~~~~~spdg~~l~~~s~--~~~~~~l~~~d~~g~~-~~~l~---~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 345 G-----GV-QVLSSTF-LDETPSLAPNGTMVIYSSS--QGMGSVLNLVSTDGRF-KARLP---ATDGQVKFPAWSPYLH 410 (415)
T ss_dssp C-----CE-EECCCSS-SCEEEEECTTSSEEEEEEE--ETTEEEEEEEETTSCC-EEECC---CSSSEEEEEEECCCCC
T ss_pred C-----CE-EEecCCC-CcCCeEEcCCCCEEEEEEc--CCCccEEEEEECCCCc-EEEee---CCCCCCcCCccccccc
Confidence 5 33 4455554 8999999999999999887 44 79999987543 34333 3447899999999643
No 134
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.94 E-value=4.5e-25 Score=248.00 Aligned_cols=280 Identities=11% Similarity=0.031 Sum_probs=209.1
Q ss_pred CCCCeeEEEEcCCCCEEEEEeC-CC-----cEEEEEecCCCCceeEEEEeCC------------------------cCeE
Q 043172 261 STGPINSVQFHRNAQLLLVAGL-DR-----RLRFFQIDGKRNTKIQSIFLED------------------------CPVR 310 (564)
Q Consensus 261 h~~~V~~l~fspdg~~l~s~s~-dg-----~I~lwd~~~~~~~~~~~~~~~~------------------------~~I~ 310 (564)
....|++++|||||++|++++. ++ .|++|++.++. ....+..+. ..|.
T Consensus 35 ~~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 112 (741)
T 2ecf_A 35 SGPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQ--TRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIV 112 (741)
T ss_dssp TCCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCC--EEEEECGGGTC--------------------CCEESC
T ss_pred CCCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCc--eeEccchhhcccccccccchhhhhhhhhhhccccCcc
Confidence 3567999999999999999998 88 89999987543 333333332 2378
Q ss_pred EEEEeeCCCEEEEEeCCCeEEEEECCCC---ceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE
Q 043172 311 KASFLPDGSQAIIAGRRKFFYSLDLVKA---KADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIG 387 (564)
Q Consensus 311 ~l~fspdg~~l~s~~~dg~i~iwdl~~~---~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~ 387 (564)
+++|||||++|++++. +.|++||+.++ .... +..+. ..+..++|||||++|++++. +.|++||+.+++...
T Consensus 113 ~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~---l~~~~-~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~ 186 (741)
T 2ecf_A 113 DYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQ---LTHGE-GFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQ 186 (741)
T ss_dssp CCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCB---CCCSS-SCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEE
T ss_pred eeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEE---cccCC-cccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEE
Confidence 9999999999999886 89999999988 5432 44443 36899999999999999874 699999999987765
Q ss_pred Eee-ecCc----------------EEEEEEecCCCEEEEEeCCC---------------------------------eEE
Q 043172 388 TLK-MNGT----------------VRSLAFADDGKQLLSSGGDG---------------------------------QVY 417 (564)
Q Consensus 388 ~~~-~~~~----------------V~~l~~spdg~~l~s~s~dg---------------------------------~V~ 417 (564)
... +... +.+++|+|||++|++++.++ .|+
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~ 266 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG 266 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence 444 2221 47899999999999987765 899
Q ss_pred EEECCC-CceeEEEee-cCCcceEEEEECCCCCEEEEEeC-----CCcEEEEeCCcccCCcceeeEEcccccc----cee
Q 043172 418 HWDLRT-RTCIHRAVD-EGCINGTALCTSPDGTFFAAGSD-----SGIVNVYNRQEFLGGKRKPIKTIENLTT----KVD 486 (564)
Q Consensus 418 lwD~~~-~~~~~~~~~-~~~~~i~~l~~sp~g~~lasgs~-----dg~V~iwd~~~~~~~~~~~~~~~~~~~~----~I~ 486 (564)
+||+.+ ++....... .+...+..++| |+|++|++++. +..|.+||+.++ +....+..+.. .+.
T Consensus 267 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g-----~~~~~~~~~~~~~~~~~~ 340 (741)
T 2ecf_A 267 VISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASN-----QQRVLAHETSPTWVPLHN 340 (741)
T ss_dssp EECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTC-----CEEEEEEEECSSCCCCCS
T ss_pred EEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCC-----ceEEEEEcCCCCcCCcCC
Confidence 999988 776543322 24456889999 99999987754 567999999876 44444443332 456
Q ss_pred EEEEcCCCcEEEEEecCCCCeEEEEEcC-CCceeccCCCCCCCCCCcEEE-EEeCCCCEEE-EEcCCC--eEEEEEcCC
Q 043172 487 FMKFNNDAQILAICSTMKKNSLKLIHIP-SYNVFSNWPPANRNLQYPRCL-DFSPGGGFMA-VGNAAG--KVFLYKLNH 560 (564)
Q Consensus 487 ~l~fspdg~~La~~s~~~d~~I~lwdl~-s~~~~~~~~~~~~~~~~V~~l-~fspdg~~La-sgs~dG--~V~lw~l~~ 560 (564)
+++|+|||+++++++. ++.++||.+. .+. ...+.. +...|.++ .|+|+|++|+ +++.++ .++||++..
T Consensus 341 ~~~~spdg~~~~~~~~--~g~~~l~~~~~~~~-~~~l~~---~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 341 SLRFLDDGSILWSSER--TGFQHLYRIDSKGK-AAALTH---GNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp CCEECTTSCEEEEECT--TSSCEEEEECSSSC-EEESCC---SSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred ceEECCCCeEEEEecC--CCccEEEEEcCCCC-eeeeee---cceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 8999999998887776 7877888765 333 443322 33567777 5999999775 455555 899998853
No 135
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.93 E-value=6.1e-25 Score=246.08 Aligned_cols=285 Identities=10% Similarity=0.081 Sum_probs=205.2
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCc---CeEEEEEeeCCCEEEEEeCC---------CeE
Q 043172 263 GPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDC---PVRKASFLPDGSQAIIAGRR---------KFF 330 (564)
Q Consensus 263 ~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~---~I~~l~fspdg~~l~s~~~d---------g~i 330 (564)
..+.+++|+|+|+++++ +.||+|++|++.++. ....+..+.. .|.+++|||||++|++++.+ +.+
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~--~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i 93 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNT--STVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYY 93 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCC--CEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEE
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCc--EEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeE
Confidence 34788999999998776 789999999998553 4444555544 48999999999999998764 789
Q ss_pred EEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCc---------------
Q 043172 331 YSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGT--------------- 394 (564)
Q Consensus 331 ~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~--------------- 394 (564)
++||+.+++...+....++. ..+..++|||+|+.||+++. +.|++|++.+++...... +...
T Consensus 94 ~~~d~~~~~~~~l~~~~~~~-~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~ 171 (723)
T 1xfd_A 94 VLSKIPHGDPQSLDPPEVSN-AKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEI 171 (723)
T ss_dssp EEEESSSCCCEECCCTTCCS-CCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTT
T ss_pred EEEECCCCceEeccCCcccc-ccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEe
Confidence 99999998864443333332 24778999999999999886 899999999988766554 2332
Q ss_pred ---EEEEEEecCCCEEEEEeCCC----------------------------------eEEEEECCCCceeEEEeec----
Q 043172 395 ---VRSLAFADDGKQLLSSGGDG----------------------------------QVYHWDLRTRTCIHRAVDE---- 433 (564)
Q Consensus 395 ---V~~l~~spdg~~l~s~s~dg----------------------------------~V~lwD~~~~~~~~~~~~~---- 433 (564)
+.+++|+|||+.|++++.++ .|++||+.++++...+..+
T Consensus 172 ~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~ 251 (723)
T 1xfd_A 172 LKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPR 251 (723)
T ss_dssp SSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGG
T ss_pred ccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCC
Confidence 37899999999999887543 8999999988765555432
Q ss_pred -CCcceEEEEECCCCCEEEEEeC----CCcEEEEeCCcccCCcceeeEEccc-cccce----eEEEEcCCCcEEEEEecC
Q 043172 434 -GCINGTALCTSPDGTFFAAGSD----SGIVNVYNRQEFLGGKRKPIKTIEN-LTTKV----DFMKFNNDAQILAICSTM 503 (564)
Q Consensus 434 -~~~~i~~l~~sp~g~~lasgs~----dg~V~iwd~~~~~~~~~~~~~~~~~-~~~~I----~~l~fspdg~~La~~s~~ 503 (564)
+...+..++|+|+|++|++.+. +..|.+||+.++ +....+.. +...+ ..++|+|||+.|++.+..
T Consensus 252 ~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g-----~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 326 (723)
T 1xfd_A 252 MREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTG-----VCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAI 326 (723)
T ss_dssp GSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTC-----CEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEE
T ss_pred CccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCC-----cceEEEEeccCCEEeccCCCceEcCCCCeEEEEEec
Confidence 2446789999999998877653 357999999876 44443332 23343 378999999988876322
Q ss_pred CCC------eEEEEE-cCCCce--eccCCCCCCCCCCcEE-EEEeCCCCEEEEEcCC---CeEEEEEcCC
Q 043172 504 KKN------SLKLIH-IPSYNV--FSNWPPANRNLQYPRC-LDFSPGGGFMAVGNAA---GKVFLYKLNH 560 (564)
Q Consensus 504 ~d~------~I~lwd-l~s~~~--~~~~~~~~~~~~~V~~-l~fspdg~~Lasgs~d---G~V~lw~l~~ 560 (564)
.++ .|.+|+ ..++.. ...+.. ++ ..+.. ++|||+|++|+..+.+ +.++||++..
T Consensus 327 ~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~--~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~ 393 (723)
T 1xfd_A 327 PQGGRGKFYHITVSSSQPNSSNDNIQSITS--GD-WDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANT 393 (723)
T ss_dssp CCSSSSCEEEEEEECSSCCSSSCCCCBSCC--SS-SCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECS
T ss_pred ccCCCcceeEEEEEeccCCCCccceeEeec--CC-eEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeC
Confidence 256 466666 333330 332221 11 33444 6999999999766544 7899999863
No 136
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.93 E-value=7.4e-24 Score=236.83 Aligned_cols=283 Identities=15% Similarity=0.084 Sum_probs=210.5
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCC----
Q 043172 262 TGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVK---- 337 (564)
Q Consensus 262 ~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~---- 337 (564)
...|.+++|||+ ..++.+. ++.|++|++.+. ....+..+...+.+++|||+|++|+++ .++.|++|++.+
T Consensus 81 ~~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~---~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~ 154 (706)
T 2z3z_A 81 AFPSFRTLDAGR-GLVVLFT-QGGLVGFDMLAR---KVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEG 154 (706)
T ss_dssp -CCCEEEEETTT-TEEEEEE-TTEEEEEETTTT---EEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSC
T ss_pred ccCceeEEECCC-CeEEEEE-CCEEEEEECCCC---ceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCccccc
Confidence 367999999999 6655553 599999998754 334455567788999999999999985 679999999998
Q ss_pred -CceeeeccccccC-----------CcceEEEEEcCCCCEEEEEe---------------------------------CC
Q 043172 338 -AKADKIGPLVGRE-----------EKSLEFFEVSPDSSVIAFVG---------------------------------NE 372 (564)
Q Consensus 338 -~~~~~~~~~~~~~-----------~~~v~~~~~spdg~~la~~~---------------------------------~d 372 (564)
++...+....... ...+.+++|||||++|++++ .+
T Consensus 155 ~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~ 234 (706)
T 2z3z_A 155 MSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHH 234 (706)
T ss_dssp CCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCE
T ss_pred CCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCe
Confidence 7765432211110 01147899999999999987 44
Q ss_pred CeEEEEECCCCcEEEEee---ecCcEEEEEEecCCCEEEEEeCCC-----eEEEEECCCCceeEEEe-ecCCc---ceEE
Q 043172 373 GYILLVSSKTKELIGTLK---MNGTVRSLAFADDGKQLLSSGGDG-----QVYHWDLRTRTCIHRAV-DEGCI---NGTA 440 (564)
Q Consensus 373 g~I~lwd~~t~~~~~~~~---~~~~V~~l~~spdg~~l~s~s~dg-----~V~lwD~~~~~~~~~~~-~~~~~---~i~~ 440 (564)
..|++||+.+++...... +...+.+++|+|+|+.|++++.++ .|++||+.+++....+. ..... .+..
T Consensus 235 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~ 314 (706)
T 2z3z_A 235 VTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHP 314 (706)
T ss_dssp EEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSC
T ss_pred eEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCC
Confidence 789999999988665442 456799999999999999887765 89999999984443333 22221 1356
Q ss_pred EEECC--CCCEEEEEeCCCcEEEEeCC-cccCCcceeeEEccccccceeE-EEEcCCCcEEEEEecCCCC----eEEEEE
Q 043172 441 LCTSP--DGTFFAAGSDSGIVNVYNRQ-EFLGGKRKPIKTIENLTTKVDF-MKFNNDAQILAICSTMKKN----SLKLIH 512 (564)
Q Consensus 441 l~~sp--~g~~lasgs~dg~V~iwd~~-~~~~~~~~~~~~~~~~~~~I~~-l~fspdg~~La~~s~~~d~----~I~lwd 512 (564)
++|+| +|++|++++.+|.++||.+. .+ ..+..+..+...+.. ++|+|+|+.|++++.. ++ .|..|+
T Consensus 315 ~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~-----~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~-~~~~~~~l~~~d 388 (706)
T 2z3z_A 315 LTFLPGSNNQFIWQSRRDGWNHLYLYDTTG-----RLIRQVTKGEWEVTNFAGFDPKGTRLYFESTE-ASPLERHFYCID 388 (706)
T ss_dssp CEECTTCSSEEEEEECTTSSCEEEEEETTS-----CEEEECCCSSSCEEEEEEECTTSSEEEEEESS-SCTTCBEEEEEE
T ss_pred ceeecCCCCEEEEEEccCCccEEEEEECCC-----CEEEecCCCCeEEEeeeEEcCCCCEEEEEecC-CCCceEEEEEEE
Confidence 89999 99999999999999999876 33 566777777777876 8999999988877763 33 677777
Q ss_pred cCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCC----CeEEEEEcCCC
Q 043172 513 IPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAA----GKVFLYKLNHY 561 (564)
Q Consensus 513 l~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~d----G~V~lw~l~~~ 561 (564)
+.++.. ..+. +...+.+++|||+|++|+++..+ +.|++|++.+.
T Consensus 389 ~~~~~~-~~l~----~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~ 436 (706)
T 2z3z_A 389 IKGGKT-KDLT----PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKG 436 (706)
T ss_dssp TTCCCC-EESC----CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSC
T ss_pred cCCCCc-eecc----CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCC
Confidence 776653 2222 23568999999999998876433 56999998653
No 137
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.93 E-value=2.8e-24 Score=241.56 Aligned_cols=283 Identities=13% Similarity=0.122 Sum_probs=212.5
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeee
Q 043172 264 PINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKI 343 (564)
Q Consensus 264 ~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~ 343 (564)
.|.+++|||||++|++++. +.|++|++.+...+.+..+..+...+.+++|||||++|++++ ++.|++||+.++....+
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~ 187 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQL 187 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEEC
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEe
Confidence 4899999999999999986 999999998652112334556778899999999999999887 46899999999876554
Q ss_pred ccccccC-------------CcceEEEEEcCCCCEEEEEeCCC---------------------------------eEEE
Q 043172 344 GPLVGRE-------------EKSLEFFEVSPDSSVIAFVGNEG---------------------------------YILL 377 (564)
Q Consensus 344 ~~~~~~~-------------~~~v~~~~~spdg~~la~~~~dg---------------------------------~I~l 377 (564)
....... ...+..++|||||++|++++.++ .|.+
T Consensus 188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~ 267 (741)
T 2ecf_A 188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGV 267 (741)
T ss_dssp CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEE
T ss_pred ccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEE
Confidence 2211100 00146799999999999987665 8999
Q ss_pred EECCC-CcEEEEe---eecCcEEEEEEecCCCEEEEEeC-----CCeEEEEECCCCceeEEEeecCCc---ceEEEEECC
Q 043172 378 VSSKT-KELIGTL---KMNGTVRSLAFADDGKQLLSSGG-----DGQVYHWDLRTRTCIHRAVDEGCI---NGTALCTSP 445 (564)
Q Consensus 378 wd~~t-~~~~~~~---~~~~~V~~l~~spdg~~l~s~s~-----dg~V~lwD~~~~~~~~~~~~~~~~---~i~~l~~sp 445 (564)
||+.+ ++..... .+...+.+++| |||+.|++++. +..|++||+.++++...+..+... .+..++|+|
T Consensus 268 ~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~sp 346 (741)
T 2ecf_A 268 ISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLD 346 (741)
T ss_dssp ECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECT
T ss_pred EECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECC
Confidence 99998 8765543 25678999999 99999987754 578999999999887666544322 235789999
Q ss_pred CCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEE-EEcCCCcEEEEEecCCCC--eEEEEEcCC-Cceecc
Q 043172 446 DGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFM-KFNNDAQILAICSTMKKN--SLKLIHIPS-YNVFSN 521 (564)
Q Consensus 446 ~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l-~fspdg~~La~~s~~~d~--~I~lwdl~s-~~~~~~ 521 (564)
+|+++++++.+|.+.||.+... . . ...+..+...|..+ .|+|+|+.|++.+.. ++ .++||++.. +.....
T Consensus 347 dg~~~~~~~~~g~~~l~~~~~~--~--~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~-~~~~~~~l~~~~~~g~~~~~ 420 (741)
T 2ecf_A 347 DGSILWSSERTGFQHLYRIDSK--G--K-AAALTHGNWSVDELLAVDEKAGLAYFRAGI-ESARESQIYAVPLQGGQPQR 420 (741)
T ss_dssp TSCEEEEECTTSSCEEEEECSS--S--C-EEESCCSSSCEEEEEEEETTTTEEEEEECS-SCTTCBEEEEEETTCCCCEE
T ss_pred CCeEEEEecCCCccEEEEEcCC--C--C-eeeeeecceEEEeEeEEeCCCCEEEEEEeC-CCCceEEEEEEEcCCCCeee
Confidence 9999999999998888877632 1 3 66777777888887 599999988766552 44 899999864 433333
Q ss_pred CCCCCCCCCCcEEEEEeCCCCEEEEEcCC----CeEEEEEcC
Q 043172 522 WPPANRNLQYPRCLDFSPGGGFMAVGNAA----GKVFLYKLN 559 (564)
Q Consensus 522 ~~~~~~~~~~V~~l~fspdg~~Lasgs~d----G~V~lw~l~ 559 (564)
+.. ...+.+++|||+|++|++...+ +.+++|++.
T Consensus 421 l~~----~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~ 458 (741)
T 2ecf_A 421 LSK----APGMHSASFARNASVYVDSWSNNSTPPQIELFRAN 458 (741)
T ss_dssp CCC----SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETT
T ss_pred ccc----CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcC
Confidence 332 3557899999999998866433 468888764
No 138
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.93 E-value=2.9e-24 Score=211.46 Aligned_cols=259 Identities=16% Similarity=0.180 Sum_probs=192.5
Q ss_pred EEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCC-CceeeeccccccCCcceEEE
Q 043172 279 VAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVK-AKADKIGPLVGREEKSLEFF 357 (564)
Q Consensus 279 s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~-~~~~~~~~~~~~~~~~v~~~ 357 (564)
+++.+++|++|++.+. ....+..|...|.+++|+|+|++|++++ ++.|++||+.+ ++...+ ..++....+.++
T Consensus 17 ~~~~~~~i~~~d~~~~---~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~--~~~~~~~~~~~~ 90 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTR---KMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKV--DTGFATICNNDH 90 (297)
T ss_dssp -CCCCEEEEEEETTTT---EEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEEC--CCTTCCCBCSCC
T ss_pred CCCcceeEEEEeCCCC---ceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEe--ccccccccccce
Confidence 3457899999998754 2334556788999999999999999987 78999999998 776543 233333467889
Q ss_pred EEcCCCCEEEEEeC----CCeEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEE-EEeCCCeEEEEECC--CCceeEEE
Q 043172 358 EVSPDSSVIAFVGN----EGYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLL-SSGGDGQVYHWDLR--TRTCIHRA 430 (564)
Q Consensus 358 ~~spdg~~la~~~~----dg~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~-s~s~dg~V~lwD~~--~~~~~~~~ 430 (564)
+|+|++++|++++. ...|.+|++.++.. ..+.....+..++|+|+++.|+ +++.++.+.+|++. ++.. ..+
T Consensus 91 ~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~-~~~ 168 (297)
T 2ojh_A 91 GISPDGALYAISDKVEFGKSAIYLLPSTGGTP-RLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVE-TRL 168 (297)
T ss_dssp EECTTSSEEEEEECTTTSSCEEEEEETTCCCC-EECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCE-EEC
T ss_pred EECCCCCEEEEEEeCCCCcceEEEEECCCCce-EEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcc-eEc
Confidence 99999999999983 24566666666653 4444445699999999999887 67788988999864 3333 333
Q ss_pred eecCCcceEEEEECCCCCEEEEEe-CCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecC------
Q 043172 431 VDEGCINGTALCTSPDGTFFAAGS-DSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTM------ 503 (564)
Q Consensus 431 ~~~~~~~i~~l~~sp~g~~lasgs-~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~------ 503 (564)
. .+...+.+++|+|+|++|++++ .++.+.||++... ...+..+..+...+.+++|+|+|++|++++..
T Consensus 169 ~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~ 243 (297)
T 2ojh_A 169 T-HGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVD----GSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDH 243 (297)
T ss_dssp C-CSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT----SSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSC
T ss_pred c-cCCCccccceECCCCCEEEEEecCCCCccEEEECCC----CCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcc
Confidence 3 3334678999999999888766 5889999998632 14566777788889999999999999988863
Q ss_pred ---CCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCC
Q 043172 504 ---KKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAG 551 (564)
Q Consensus 504 ---~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG 551 (564)
..+.|++|++.++....... ...+...+.+++|+|+|++|++++.+.
T Consensus 244 ~~~~~~~l~~~d~~~~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 244 PRDLDVRVQLMDMDGGNVETLFD-LFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp CSSEEEEEEEEETTSCSCEEEEE-EEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred cccCceEEEEEecCCCCceeeec-cCCCCcccccceECCCCCEEEEEEecc
Confidence 12579999998876533221 113346788899999999998877553
No 139
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.93 E-value=6.8e-24 Score=213.67 Aligned_cols=269 Identities=16% Similarity=0.119 Sum_probs=206.1
Q ss_pred CEEEEEeCCCcEEEEEecCCCCceeEEEEeCCc--CeEEEEEeeCCCEEEEEe-CCCeEEEEECCCCceeeecccccc--
Q 043172 275 QLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDC--PVRKASFLPDGSQAIIAG-RRKFFYSLDLVKAKADKIGPLVGR-- 349 (564)
Q Consensus 275 ~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~--~I~~l~fspdg~~l~s~~-~dg~i~iwdl~~~~~~~~~~~~~~-- 349 (564)
.+|++++.++.|.+||+.. ...+..+..... .+..++|+|+|+++++++ .++.|++||+.+++..........
T Consensus 2 ~~~v~~~~~~~v~~~d~~~--~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~ 79 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEK--MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE 79 (337)
T ss_dssp EEEEEEETTTEEEEEETTT--TEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE
T ss_pred cEEEEcCCCCeEEEEECCC--CcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccc
Confidence 4789999999999999874 345555553332 578999999998876554 578999999999886543332210
Q ss_pred CCcceEEEEEcCCCCEEEEEe------------CCCeEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEEeCCCeEE
Q 043172 350 EEKSLEFFEVSPDSSVIAFVG------------NEGYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSGGDGQVY 417 (564)
Q Consensus 350 ~~~~v~~~~~spdg~~la~~~------------~dg~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s~dg~V~ 417 (564)
....+..++|+|+|++|++++ .++.|.+||+.+++.+..+.....+.+++|+|++++|+++ ++.|+
T Consensus 80 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~ 157 (337)
T 1pby_B 80 RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLH 157 (337)
T ss_dssp EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEE
T ss_pred ccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEE
Confidence 011356799999999998886 5799999999999988888766778899999999988887 68899
Q ss_pred EEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCC-C-----------------------cEEEEeCCcccCCcce
Q 043172 418 HWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDS-G-----------------------IVNVYNRQEFLGGKRK 473 (564)
Q Consensus 418 lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~d-g-----------------------~V~iwd~~~~~~~~~~ 473 (564)
+||+.+++.+..+....... .++|+|++.++++.+.. + .|.+||+.+. +
T Consensus 158 ~~d~~~~~~~~~~~~~~~~~--~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~-----~ 230 (337)
T 1pby_B 158 VMDPEAGTLVEDKPIQSWEA--ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETG-----E 230 (337)
T ss_dssp EEETTTTEEEEEECSTTTTT--TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTC-----C
T ss_pred EEECCCCcEeeeeeccccCC--CceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCC-----C
Confidence 99999998877665443111 23788998866554433 2 4689998875 3
Q ss_pred e-eEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCe
Q 043172 474 P-IKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGK 552 (564)
Q Consensus 474 ~-~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~ 552 (564)
. ...+..+...+.+++|+|+|++|+++ ++.|++|++.+++....++.. ..+.+++|+|+|++|++++.++.
T Consensus 231 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~----~~~v~~~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~~~ 302 (337)
T 1pby_B 231 MAMREVRIMDVFYFSTAVNPAKTRAFGA----YNVLESFDLEKNASIKRVPLP----HSYYSVNVSTDGSTVWLGGALGD 302 (337)
T ss_dssp EEEEEEEECSSCEEEEEECTTSSEEEEE----ESEEEEEETTTTEEEEEEECS----SCCCEEEECTTSCEEEEESBSSE
T ss_pred ceEeecCCCCCceeeEEECCCCCEEEEe----CCeEEEEECCCCcCcceecCC----CceeeEEECCCCCEEEEEcCCCc
Confidence 2 23344455678899999999999887 479999999998877665433 45789999999999999999999
Q ss_pred EEEEEcCCCC
Q 043172 553 VFLYKLNHYH 562 (564)
Q Consensus 553 V~lw~l~~~~ 562 (564)
|.+|++.+.+
T Consensus 303 i~v~d~~~~~ 312 (337)
T 1pby_B 303 LAAYDAETLE 312 (337)
T ss_dssp EEEEETTTCC
T ss_pred EEEEECcCCc
Confidence 9999998754
No 140
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.93 E-value=3.9e-23 Score=210.26 Aligned_cols=277 Identities=13% Similarity=0.196 Sum_probs=190.4
Q ss_pred EEEEEe----CCCcEEEEEecCCCCceeE-EEEeCCcCeEEEEEeeCCCEEEEEeC---CCeEEEEECCCCceeeecccc
Q 043172 276 LLLVAG----LDRRLRFFQIDGKRNTKIQ-SIFLEDCPVRKASFLPDGSQAIIAGR---RKFFYSLDLVKAKADKIGPLV 347 (564)
Q Consensus 276 ~l~s~s----~dg~I~lwd~~~~~~~~~~-~~~~~~~~I~~l~fspdg~~l~s~~~---dg~i~iwdl~~~~~~~~~~~~ 347 (564)
.|++|+ .++.|.+|.++..+..... ....+...+..++|+|+|+ |++++. ++.|++|++.++....+..+.
T Consensus 4 ~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~ 82 (347)
T 3hfq_A 4 RILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVV 82 (347)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeee
Confidence 355553 3567999999865443322 2233456678899999998 666654 589999999887765544433
Q ss_pred ccCCcceEEEEEcCCCCEEEEEe-CCCeEEEEECC-CCc--EEEEeeec----------CcEEEEEEecCCCEEEEEeCC
Q 043172 348 GREEKSLEFFEVSPDSSVIAFVG-NEGYILLVSSK-TKE--LIGTLKMN----------GTVRSLAFADDGKQLLSSGGD 413 (564)
Q Consensus 348 ~~~~~~v~~~~~spdg~~la~~~-~dg~I~lwd~~-t~~--~~~~~~~~----------~~V~~l~~spdg~~l~s~s~d 413 (564)
.+.. .+..++|+|+|++|++++ .++.|.+|++. ++. .+..+.+. ..+.+++|+|+|+++++...+
T Consensus 83 ~~~~-~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~ 161 (347)
T 3hfq_A 83 APGT-PPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGS 161 (347)
T ss_dssp EESC-CCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTT
T ss_pred cCCC-CCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCC
Confidence 3333 577899999999998888 67999999996 333 33333322 248899999999966666668
Q ss_pred CeEEEEECC-CCceeE--EEeecCCcceEEEEECCCCCEEEE-EeCCCcEEEEeCCcccCCcceeeEEccccc------c
Q 043172 414 GQVYHWDLR-TRTCIH--RAVDEGCINGTALCTSPDGTFFAA-GSDSGIVNVYNRQEFLGGKRKPIKTIENLT------T 483 (564)
Q Consensus 414 g~V~lwD~~-~~~~~~--~~~~~~~~~i~~l~~sp~g~~las-gs~dg~V~iwd~~~~~~~~~~~~~~~~~~~------~ 483 (564)
+.|++|++. ++.... .+..........++|+|+|+++++ +..++.|.+|++.... .....+..+.... .
T Consensus 162 ~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~-g~~~~~~~~~~~~~~~~~~~ 240 (347)
T 3hfq_A 162 DKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQT-GAFTQLGIVKTIPADYTAHN 240 (347)
T ss_dssp TEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTT-TEEEEEEEEESSCTTCCSCC
T ss_pred CEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCC-CceEEeeeeeecCCCCCCCC
Confidence 899999998 454332 222233335678999999996665 5668899999987410 1112233333222 4
Q ss_pred ceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCC---ceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcC-CCeEEEEEcC
Q 043172 484 KVDFMKFNNDAQILAICSTMKKNSLKLIHIPSY---NVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNA-AGKVFLYKLN 559 (564)
Q Consensus 484 ~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~---~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~-dG~V~lw~l~ 559 (564)
.+..++|+|||++|+++... ++.|.+|++... ..+..++. +...+.+++|+|+|++|++++. ++.|.+|++.
T Consensus 241 ~~~~i~~spdG~~l~v~~~~-~~~v~v~~~~~~g~~~~~~~~~~---~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 241 GAAAIRLSHDGHFLYVSNRG-YNTLAVFAVTADGHLTLIQQIST---EGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp EEEEEEECTTSCEEEEEEET-TTEEEEEEECGGGCEEEEEEEEC---SSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred cceeEEECCCCCEEEEEeCC-CCEEEEEEECCCCcEEEeEEEec---CCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 58889999999988665543 789999999732 33333332 2245789999999999888875 4899999664
No 141
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.92 E-value=4.8e-23 Score=207.99 Aligned_cols=273 Identities=13% Similarity=0.138 Sum_probs=193.5
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCC-CcEEEEEec--CCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeC-CCeEEEEEC
Q 043172 260 SSTGPINSVQFHRNAQLLLVAGLD-RRLRFFQID--GKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGR-RKFFYSLDL 335 (564)
Q Consensus 260 ~h~~~V~~l~fspdg~~l~s~s~d-g~I~lwd~~--~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~-dg~i~iwdl 335 (564)
.|...+.+++|+|++++|++++.+ +.|.+|+++ ......+..+..+. .+..++|+|+|++|++++. ++.|.+|++
T Consensus 35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~ 113 (343)
T 1ri6_A 35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRL 113 (343)
T ss_dssp ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEEC
Confidence 366789999999999999988886 999999998 33434455555444 7889999999998887775 789999999
Q ss_pred CCCceee-eccccccCCcceEEEEEcCCCCEEEEEe-CCCeEEEEECCC-CcEEEE----ee--ecCcEEEEEEecCCCE
Q 043172 336 VKAKADK-IGPLVGREEKSLEFFEVSPDSSVIAFVG-NEGYILLVSSKT-KELIGT----LK--MNGTVRSLAFADDGKQ 406 (564)
Q Consensus 336 ~~~~~~~-~~~~~~~~~~~v~~~~~spdg~~la~~~-~dg~I~lwd~~t-~~~~~~----~~--~~~~V~~l~~spdg~~ 406 (564)
..+.... +..+..+. .+.+++|+|++++|++++ .++.|.+|++.+ ++.... +. ....+.+++|+|++++
T Consensus 114 ~~~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~ 191 (343)
T 1ri6_A 114 EDGLPVGVVDVVEGLD--GCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQY 191 (343)
T ss_dssp ETTEEEEEEEEECCCT--TBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSE
T ss_pred CCCccccccccccCCC--CceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCE
Confidence 5333221 22222222 478899999999888887 789999999987 655432 22 3457889999999997
Q ss_pred EEEEe-CCCeEEEEECCC--Cce--eEEEee--c---CCcceEEEEECCCCCEEEE-EeCCCcEEEEeCCcccCCcceee
Q 043172 407 LLSSG-GDGQVYHWDLRT--RTC--IHRAVD--E---GCINGTALCTSPDGTFFAA-GSDSGIVNVYNRQEFLGGKRKPI 475 (564)
Q Consensus 407 l~s~s-~dg~V~lwD~~~--~~~--~~~~~~--~---~~~~i~~l~~sp~g~~las-gs~dg~V~iwd~~~~~~~~~~~~ 475 (564)
|++++ .++.|++|++.. +.. ...+.. . +...+..++|+|+|++|++ +..++.|.+|++... ....+.+
T Consensus 192 l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~-~~~~~~~ 270 (343)
T 1ri6_A 192 AYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSED-GSVLSKE 270 (343)
T ss_dssp EEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT-SCCEEEE
T ss_pred EEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCC-CCceEEe
Confidence 76665 789999999953 332 222221 1 1234568999999988774 457899999999831 0123555
Q ss_pred EEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcC--CCc--eeccCCCCCCCCCCcEEEEEeCCCC
Q 043172 476 KTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIP--SYN--VFSNWPPANRNLQYPRCLDFSPGGG 542 (564)
Q Consensus 476 ~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~--s~~--~~~~~~~~~~~~~~V~~l~fspdg~ 542 (564)
..+..+.. +..++|+|+|++|++++.. ++.|.+|++. ++. .+..++.. ..+.+++|.|+.+
T Consensus 271 ~~~~~~~~-~~~~~~s~dg~~l~~~~~~-~~~v~v~~~d~~~g~~~~~~~~~~g----~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 271 GFQPTETQ-PRGFNVDHSGKYLIAAGQK-SHHISVYEIVGEQGLLHEKGRYAVG----QGPMWVVVNAHEG 335 (343)
T ss_dssp EEEECSSS-CCCEEECTTSSEEEEECTT-TCEEEEEEEETTTTEEEEEEEEECS----SSCCEEEEEEEC-
T ss_pred eeecCCCc-cceEEECCCCCEEEEecCC-CCeEEEEEEcCCCceeeEccccccC----CCCeeEEEEcccC
Confidence 55554444 8899999999999888853 7999999654 543 23333332 3466788877543
No 142
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.92 E-value=1.5e-23 Score=234.86 Aligned_cols=279 Identities=14% Similarity=0.052 Sum_probs=194.7
Q ss_pred CeeEEEEcCCCCEEEEEeCC---------CcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEE
Q 043172 264 PINSVQFHRNAQLLLVAGLD---------RRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLD 334 (564)
Q Consensus 264 ~V~~l~fspdg~~l~s~s~d---------g~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwd 334 (564)
.|.+++|||||++|++++.+ +.|.+|++.++....+.....+...+..++|||||++|++++. +.|++|+
T Consensus 62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~ 140 (723)
T 1xfd_A 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCA 140 (723)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEES
T ss_pred ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEE
Confidence 49999999999999999764 7788999986543222222233445889999999999999886 7999999
Q ss_pred CCCCceeeeccccccCC----------------cceEEEEEcCCCCEEEEEeCCC-------------------------
Q 043172 335 LVKAKADKIGPLVGREE----------------KSLEFFEVSPDSSVIAFVGNEG------------------------- 373 (564)
Q Consensus 335 l~~~~~~~~~~~~~~~~----------------~~v~~~~~spdg~~la~~~~dg------------------------- 373 (564)
+.++...++.... ... ..+.+++|||||++|++++.++
T Consensus 141 ~~~g~~~~~~~~~-~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (723)
T 1xfd_A 141 HVGKQAIRVVSTG-KEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYP 219 (723)
T ss_dssp SSSSCCEEEECCC-BTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECC
T ss_pred CCCCceEEEecCC-CCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCC
Confidence 9988765543221 110 1237899999999999987542
Q ss_pred ---------eEEEEECCCCcEEEEee-e------cCcEEEEEEecCCCEEEEEeC----CCeEEEEECCCCceeEEEeec
Q 043172 374 ---------YILLVSSKTKELIGTLK-M------NGTVRSLAFADDGKQLLSSGG----DGQVYHWDLRTRTCIHRAVDE 433 (564)
Q Consensus 374 ---------~I~lwd~~t~~~~~~~~-~------~~~V~~l~~spdg~~l~s~s~----dg~V~lwD~~~~~~~~~~~~~ 433 (564)
.|++||+.+++....+. + ...+.+++|+|||++|++.+. +..|++||+.++++...+...
T Consensus 220 ~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~ 299 (723)
T 1xfd_A 220 KAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE 299 (723)
T ss_dssp BTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE
T ss_pred CCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEec
Confidence 89999999988655554 2 467899999999998876643 358999999998877655443
Q ss_pred CCcce----EEEEECCCCCEEEE--EeCCC------cEEEEeC-CcccCCcceeeEEccccccceeE-EEEcCCCcEEEE
Q 043172 434 GCING----TALCTSPDGTFFAA--GSDSG------IVNVYNR-QEFLGGKRKPIKTIENLTTKVDF-MKFNNDAQILAI 499 (564)
Q Consensus 434 ~~~~i----~~l~~sp~g~~las--gs~dg------~V~iwd~-~~~~~~~~~~~~~~~~~~~~I~~-l~fspdg~~La~ 499 (564)
+...+ ..++|+|+|++|+. +..++ .|.+||. ... ...+...+......+.. ++|+|||+.|++
T Consensus 300 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~---~~~~~~~l~~~~~~~~~~~~~spdg~~l~~ 376 (723)
T 1xfd_A 300 SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNS---SNDNIQSITSGDWDVTKILAYDEKGNKIYF 376 (723)
T ss_dssp CSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCS---SSCCCCBSCCSSSCEEEEEEEETTTTEEEE
T ss_pred cCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCC---CccceeEeecCCeEEEeeeEEcCCCCEEEE
Confidence 22222 37899999997765 44566 4666773 332 10013444433344444 699999999987
Q ss_pred EecCCC--CeEEEEEcCCCc--eeccCCCCCCCCCCcEEEEEeCCCCEEEEEc
Q 043172 500 CSTMKK--NSLKLIHIPSYN--VFSNWPPANRNLQYPRCLDFSPGGGFMAVGN 548 (564)
Q Consensus 500 ~s~~~d--~~I~lwdl~s~~--~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs 548 (564)
.+.. + +.++||.+.... ....+.....+...+..++|||+|++|+...
T Consensus 377 ~~~~-~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~ 428 (723)
T 1xfd_A 377 LSTE-DLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKC 428 (723)
T ss_dssp EESS-SCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred EEcC-CCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEc
Confidence 7763 3 789999986532 2222221111345688999999999888654
No 143
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.91 E-value=1.3e-22 Score=221.74 Aligned_cols=267 Identities=9% Similarity=0.024 Sum_probs=197.5
Q ss_pred CCCeeEEEEcCCCCEEEEEeC-CCcEEEEEecCCCCceeEEEEeCC-cCeEEEEEeeCCCEEEEEeC---CCeEEE--EE
Q 043172 262 TGPINSVQFHRNAQLLLVAGL-DRRLRFFQIDGKRNTKIQSIFLED-CPVRKASFLPDGSQAIIAGR---RKFFYS--LD 334 (564)
Q Consensus 262 ~~~V~~l~fspdg~~l~s~s~-dg~I~lwd~~~~~~~~~~~~~~~~-~~I~~l~fspdg~~l~s~~~---dg~i~i--wd 334 (564)
..+|++++|+|||++||+++. +|+++||+++++ ....+..+. ..+..++|+|+ +.+++++. +....+ ++
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g---~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~ 96 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGG---ETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVN 96 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETT---EEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCC---CcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEe
Confidence 457999999999999999887 999999998654 233444444 58999999999 66666664 344445 55
Q ss_pred C--CCCceeeeccccccCCcceEEEEEcCCCCE-EEEEeCCCeEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEEe
Q 043172 335 L--VKAKADKIGPLVGREEKSLEFFEVSPDSSV-IAFVGNEGYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSG 411 (564)
Q Consensus 335 l--~~~~~~~~~~~~~~~~~~v~~~~~spdg~~-la~~~~dg~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s 411 (564)
+ ..... .+ .... .+..++|+|+|+. +++.+..+.+.+||+.+++......+.. .+++|+|||++|++++
T Consensus 97 ~~~~g~~~-~l---~~~~--~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~ 168 (582)
T 3o4h_A 97 TSRPGEEQ-RL---EAVK--PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLG 168 (582)
T ss_dssp TTSTTCCE-EC---TTSC--SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEE
T ss_pred ccCCCccc-cc---cCCC--CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEE
Confidence 5 33322 22 2222 2346688888863 3333444556699999988766655544 8899999999999887
Q ss_pred CC----CeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCC--cEEEEeCCcccCCcceeeEEccccccce
Q 043172 412 GD----GQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSG--IVNVYNRQEFLGGKRKPIKTIENLTTKV 485 (564)
Q Consensus 412 ~d----g~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg--~V~iwd~~~~~~~~~~~~~~~~~~~~~I 485 (564)
.+ +.|++||+.+++.. .+.. +...+..++|||+|++|+++..+| .|++||+.++ .+. .+..+...+
T Consensus 169 ~~~~~~~~i~~~d~~~g~~~-~l~~-~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~-----~~~-~~~~~~~~~ 240 (582)
T 3o4h_A 169 FFGGGRVSLFTSNLSSGGLR-VFDS-GEGSFSSASISPGMKVTAGLETAREARLVTVDPRDG-----SVE-DLELPSKDF 240 (582)
T ss_dssp EEETTEEEEEEEETTTCCCE-EECC-SSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTC-----CEE-ECCCSCSHH
T ss_pred EcCCCCeEEEEEcCCCCCce-Eeec-CCCccccceECCCCCEEEEccCCCeeEEEEEcCCCC-----cEE-EccCCCcCh
Confidence 76 78999999988765 3443 334578999999999999888888 8999999876 444 667777777
Q ss_pred eEEE--------EcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCe---EE
Q 043172 486 DFMK--------FNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGK---VF 554 (564)
Q Consensus 486 ~~l~--------fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~---V~ 554 (564)
..++ |+|||.++++++. ++.++||++ ++... .+.+.|.+++|+ +++++++++.+.. |+
T Consensus 241 ~~~~~~~~~~~~~spdg~~~~~~~~--~g~~~l~~~--g~~~~------~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~ 309 (582)
T 3o4h_A 241 SSYRPTAITWLGYLPDGRLAVVARR--EGRSAVFID--GERVE------APQGNHGRVVLW-RGKLVTSHTSLSTPPRIV 309 (582)
T ss_dssp HHHCCSEEEEEEECTTSCEEEEEEE--TTEEEEEET--TEEEC------CCSSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred hhhhhccccceeEcCCCcEEEEEEc--CCcEEEEEE--CCeec------cCCCceEEEEec-CCEEEEEEcCCCCCCeEE
Confidence 7777 9999988888887 899999999 65543 122568899999 9999988877643 66
Q ss_pred EEEcC
Q 043172 555 LYKLN 559 (564)
Q Consensus 555 lw~l~ 559 (564)
+|++.
T Consensus 310 ~~d~~ 314 (582)
T 3o4h_A 310 SLPSG 314 (582)
T ss_dssp EETTC
T ss_pred EEcCC
Confidence 66654
No 144
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.91 E-value=1.7e-22 Score=235.70 Aligned_cols=281 Identities=11% Similarity=0.054 Sum_probs=221.7
Q ss_pred CCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCC
Q 043172 259 ESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKA 338 (564)
Q Consensus 259 ~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~ 338 (564)
.+|.+.|.+++|+++ .++++++.++++.||.++.... ....+..+. .+..++|+|+|++|+++. ++.|++|++...
T Consensus 200 ~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~-~~~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~ 275 (1045)
T 1k32_A 200 VDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGK-DLRKHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNPDTE 275 (1045)
T ss_dssp ECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSC-SCEECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEECTTTC
T ss_pred cCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCC-cceEecCCC-CcceeeEcCCCCEEEEEe-CCEEEEecCCce
Confidence 469999999999998 6777888899999998874322 333444444 467789999999998874 889999999555
Q ss_pred ceeeecccccc----------CCcceEEEEEc-CCCCEEEEEeCCCeEEEEECCCCcEEEEeeecC-cEEEEEEecCCCE
Q 043172 339 KADKIGPLVGR----------EEKSLEFFEVS-PDSSVIAFVGNEGYILLVSSKTKELIGTLKMNG-TVRSLAFADDGKQ 406 (564)
Q Consensus 339 ~~~~~~~~~~~----------~~~~v~~~~~s-pdg~~la~~~~dg~I~lwd~~t~~~~~~~~~~~-~V~~l~~spdg~~ 406 (564)
... .+.++ +...+..++|+ |+|++|++++ ++.|.+|++.++.......+.. .+.+++|+ +|+.
T Consensus 276 ~l~---~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~ 350 (1045)
T 1k32_A 276 KIE---KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVA 350 (1045)
T ss_dssp CEE---ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEE
T ss_pred Eee---eeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCe
Confidence 443 23221 11257899999 9999999887 7899999999887665444666 89999999 9999
Q ss_pred EEEEeCCCeEE-EEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccce
Q 043172 407 LLSSGGDGQVY-HWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKV 485 (564)
Q Consensus 407 l~s~s~dg~V~-lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I 485 (564)
|++++.++.|+ +|++.++... .+. .+...+..++|+|+|++|++++.++.|++||+.++ +....+..|...+
T Consensus 351 l~~~s~~~~l~~~~d~~~~~~~-~l~-~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg-----~~~~~~~~~~~~v 423 (1045)
T 1k32_A 351 FIHGTREGDFLGIYDYRTGKAE-KFE-ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG-----KPTVIERSREAMI 423 (1045)
T ss_dssp EEEEETTEEEEEEEETTTCCEE-ECC-CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC-----CEEEEEECSSSCC
T ss_pred EEEEECCCceEEEEECCCCCce-Eec-CCccceeeeEECCCCCEEEEECCCCeEEEEECCCC-----ceEEeccCCCCCc
Confidence 99999888999 9999877654 333 44457889999999999999999999999999886 5555666788899
Q ss_pred eEEEEcCCCcEEEEEecCC--------CCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEE
Q 043172 486 DFMKFNNDAQILAICSTMK--------KNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYK 557 (564)
Q Consensus 486 ~~l~fspdg~~La~~s~~~--------d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~ 557 (564)
.+++|+|||++|++++... ++.|++|++.++.. ..+. .+...+.+++|+|+|++|++++.++...+|+
T Consensus 424 ~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~-~~l~---~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~ 499 (1045)
T 1k32_A 424 TDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI-FAAT---TENSHDYAPAFDADSKNLYYLSYRSLDPSPD 499 (1045)
T ss_dssp CCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE-EECS---CSSSBEEEEEECTTSCEEEEEESCCCCCEEC
T ss_pred cceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcE-EEee---CCCcccCCceEcCCCCEEEEEecccCCcCcc
Confidence 9999999999999887621 24899999998774 3222 2345688899999999999999888888887
Q ss_pred cC
Q 043172 558 LN 559 (564)
Q Consensus 558 l~ 559 (564)
..
T Consensus 500 ~~ 501 (1045)
T 1k32_A 500 RV 501 (1045)
T ss_dssp SS
T ss_pred hh
Confidence 53
No 145
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.90 E-value=1.8e-22 Score=235.52 Aligned_cols=283 Identities=12% Similarity=-0.008 Sum_probs=219.4
Q ss_pred CCCCeeEEEEc-CCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCc-CeEEEEEeeCCCEEEEEeCCCeEE-EEECCC
Q 043172 261 STGPINSVQFH-RNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDC-PVRKASFLPDGSQAIIAGRRKFFY-SLDLVK 337 (564)
Q Consensus 261 h~~~V~~l~fs-pdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~-~I~~l~fspdg~~l~s~~~dg~i~-iwdl~~ 337 (564)
|...|.+++|| |+|++|++++ ++.|.+|++.... ...+..+.. .+..++|+ +|+.|++++.+..++ +|++.+
T Consensus 294 ~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~ 368 (1045)
T 1k32_A 294 SIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTY---VLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRT 368 (1045)
T ss_dssp ECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSB---EEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTT
T ss_pred cccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCc---eEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCC
Confidence 45579999999 9999999887 7899999887432 333555666 88999999 999999998888899 999998
Q ss_pred CceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEeCCC--
Q 043172 338 AKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGGDG-- 414 (564)
Q Consensus 338 ~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg-- 414 (564)
+....+ .++. ..+..++|+|+|++|++++.++.|++||+.+++....+. |.+.+.+++|+|+|++|++++.++
T Consensus 369 ~~~~~l---~~~~-~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~ 444 (1045)
T 1k32_A 369 GKAEKF---EENL-GNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHG 444 (1045)
T ss_dssp CCEEEC---CCCC-CSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSS
T ss_pred CCceEe---cCCc-cceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccc
Confidence 876443 3333 368999999999999999999999999999999887774 788899999999999998887644
Q ss_pred --------eEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccC-----------------
Q 043172 415 --------QVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLG----------------- 469 (564)
Q Consensus 415 --------~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~----------------- 469 (564)
.|++||+.+++ +..+..+ ...+..++|+|+|++|++++.++...+|+......
T Consensus 445 ~~~~~~~~~i~l~d~~~g~-~~~l~~~-~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (1045)
T 1k32_A 445 ETDGYVMQAIHVYDMEGRK-IFAATTE-NSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGS 522 (1045)
T ss_dssp TTCSCCEEEEEEEETTTTE-EEECSCS-SSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTC
T ss_pred cccCCCCCeEEEEECCCCc-EEEeeCC-CcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCC
Confidence 89999999877 4444433 34578899999999999999887777776432100
Q ss_pred ---------------------CcceeeEEccccccceeEEEEcCCCcEEEE-----------EecCCCCeEEEEEcCCCc
Q 043172 470 ---------------------GKRKPIKTIENLTTKVDFMKFNNDAQILAI-----------CSTMKKNSLKLIHIPSYN 517 (564)
Q Consensus 470 ---------------------~~~~~~~~~~~~~~~I~~l~fspdg~~La~-----------~s~~~d~~I~lwdl~s~~ 517 (564)
.....+..+..+...+..++|+|+|.++++ ++......|.+||+.++.
T Consensus 523 ~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~ 602 (1045)
T 1k32_A 523 PNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK 602 (1045)
T ss_dssp CCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCC
T ss_pred CCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCc
Confidence 000122334446677899999999988875 122225578889998876
Q ss_pred eeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCCCC
Q 043172 518 VFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNHYH 562 (564)
Q Consensus 518 ~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~~~ 562 (564)
..... ..+.+++|||||++|++++.+ .|++|++...+
T Consensus 603 ~~~l~-------~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 603 VTEVK-------NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp EEEEE-------EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred EEEee-------cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence 53322 457899999999999999866 79999997654
No 146
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.90 E-value=2.7e-21 Score=197.92 Aligned_cols=278 Identities=12% Similarity=0.117 Sum_probs=191.5
Q ss_pred CCCCEEEEEeC----CCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCC----CeEEEEECCC--Ccee
Q 043172 272 RNAQLLLVAGL----DRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRR----KFFYSLDLVK--AKAD 341 (564)
Q Consensus 272 pdg~~l~s~s~----dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~d----g~i~iwdl~~--~~~~ 341 (564)
+...++++|+. ++.|.+|.++............+...+..++|+|+|++|++++.+ +.|.+|++.. +...
T Consensus 11 ~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~ 90 (361)
T 3scy_A 11 DSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLH 90 (361)
T ss_dssp GGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEE
T ss_pred CCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEE
Confidence 34456667754 568999999764443322222266677889999999999999875 7999998765 5554
Q ss_pred eeccccccCCcceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCcEEE----Eeee-----------cCcEEEEEEecCCC
Q 043172 342 KIGPLVGREEKSLEFFEVSPDSSVIAFVG-NEGYILLVSSKTKELIG----TLKM-----------NGTVRSLAFADDGK 405 (564)
Q Consensus 342 ~~~~~~~~~~~~v~~~~~spdg~~la~~~-~dg~I~lwd~~t~~~~~----~~~~-----------~~~V~~l~~spdg~ 405 (564)
.+.....+.. ....+++ ++++|++++ .++.|.+|++.....+. .+.+ ...+.+++|+|+|+
T Consensus 91 ~~~~~~~~~~-~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~ 167 (361)
T 3scy_A 91 LLNTQKTMGA-DPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGK 167 (361)
T ss_dssp EEEEEECSSS-CEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSS
T ss_pred EeeEeccCCC-CcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCC
Confidence 4443332222 4566777 888887776 57899999997543221 1111 22458899999999
Q ss_pred EEEEEeC-CCeEEEEECCCCce------e------EEEeecCCcceEEEEECCCCCEEEEEe-CCCcEEEEeCCcccCCc
Q 043172 406 QLLSSGG-DGQVYHWDLRTRTC------I------HRAVDEGCINGTALCTSPDGTFFAAGS-DSGIVNVYNRQEFLGGK 471 (564)
Q Consensus 406 ~l~s~s~-dg~V~lwD~~~~~~------~------~~~~~~~~~~i~~l~~sp~g~~lasgs-~dg~V~iwd~~~~~~~~ 471 (564)
+|++++. ++.|++|++..... + .............++|+|+|+++++++ .++.|.+|++..+ .
T Consensus 168 ~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g---~ 244 (361)
T 3scy_A 168 YLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADG---M 244 (361)
T ss_dssp EEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETT---E
T ss_pred EEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCC---c
Confidence 7766654 78999999875431 1 122233344568899999999887776 6899999999753 1
Q ss_pred ceeeEEc---cccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcC--CCc--eeccCCCCCCCCCCcEEEEEeCCCCEE
Q 043172 472 RKPIKTI---ENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIP--SYN--VFSNWPPANRNLQYPRCLDFSPGGGFM 544 (564)
Q Consensus 472 ~~~~~~~---~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~--s~~--~~~~~~~~~~~~~~V~~l~fspdg~~L 544 (564)
...+..+ ..+...+..++|+|||++|+++....++.|.+|++. ++. .+..++. ...+.+++|+|+|++|
T Consensus 245 ~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~----g~~~~~~~~spdg~~l 320 (361)
T 3scy_A 245 LDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT----GIHPRNFIITPNGKYL 320 (361)
T ss_dssp EEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC----SSCCCEEEECTTSCEE
T ss_pred eEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC----CCCCceEEECCCCCEE
Confidence 2223332 333455689999999999988776324799999995 343 3333332 2467899999999999
Q ss_pred EEEc-CCCeEEEEEcC
Q 043172 545 AVGN-AAGKVFLYKLN 559 (564)
Q Consensus 545 asgs-~dG~V~lw~l~ 559 (564)
++++ .++.|.+|++.
T Consensus 321 ~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 321 LVACRDTNVIQIFERD 336 (361)
T ss_dssp EEEETTTTEEEEEEEC
T ss_pred EEEECCCCCEEEEEEE
Confidence 8887 67899998765
No 147
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.90 E-value=3.9e-22 Score=202.00 Aligned_cols=269 Identities=16% Similarity=0.184 Sum_probs=194.0
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCC-cCeEEEEEeeCCCEEEEEe-CCCeEEEEECCCCceeeec
Q 043172 267 SVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLED-CPVRKASFLPDGSQAIIAG-RRKFFYSLDLVKAKADKIG 344 (564)
Q Consensus 267 ~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~-~~I~~l~fspdg~~l~s~~-~dg~i~iwdl~~~~~~~~~ 344 (564)
.+++++++.++++++.+++|.+||+.. ...+..+..+. ..+..++|+|+|+++++++ .++.|++||+.+++.....
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~--~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~ 81 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVAS--DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHA 81 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTT--TEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCC--CcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEE
Confidence 457888999999999999999999874 34555665443 2578999999999776554 6889999999998765433
Q ss_pred cccccC---CcceEEEEEcCCCCEEEEEeCC------------CeEEEEECCCCc---EEEEeeecCcEEEEEEecCCCE
Q 043172 345 PLVGRE---EKSLEFFEVSPDSSVIAFVGNE------------GYILLVSSKTKE---LIGTLKMNGTVRSLAFADDGKQ 406 (564)
Q Consensus 345 ~~~~~~---~~~v~~~~~spdg~~la~~~~d------------g~I~lwd~~t~~---~~~~~~~~~~V~~l~~spdg~~ 406 (564)
.+.... ...+..++|+|+|++|++++.+ +.|.+||+.+++ .+..+.+...+.+++|+|+|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~- 160 (349)
T 1jmx_B 82 NLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS- 160 (349)
T ss_dssp ESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-
T ss_pred EcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-
Confidence 322110 1236789999999999998865 899999998854 334455566789999999999
Q ss_pred EEEEeCCCeEEEEECCCCceeEEEeecCC-----------------------cceEEEEECCCCC-----------EEEE
Q 043172 407 LLSSGGDGQVYHWDLRTRTCIHRAVDEGC-----------------------INGTALCTSPDGT-----------FFAA 452 (564)
Q Consensus 407 l~s~s~dg~V~lwD~~~~~~~~~~~~~~~-----------------------~~i~~l~~sp~g~-----------~las 452 (564)
+++++. .|++||+.+++.+..+..... .....+++++++. ++..
T Consensus 161 l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 238 (349)
T 1jmx_B 161 LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSV 238 (349)
T ss_dssp EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEE
T ss_pred EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEE
Confidence 666543 499999999988776653320 0234456665442 1112
Q ss_pred EeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcC-CCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCC
Q 043172 453 GSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNN-DAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQY 531 (564)
Q Consensus 453 gs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fsp-dg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~ 531 (564)
...++.+.+|++ ..+...+..++|+| +|++|+++ ++.|.+||+.+++....++.. ..
T Consensus 239 ~~~~~~~~~~~~--------------~~~~~~~~~~~~sp~dg~~l~~~----~~~v~~~d~~~~~~~~~~~~~----~~ 296 (349)
T 1jmx_B 239 DLKTGKTHTQEF--------------ADLTELYFTGLRSPKDPNQIYGV----LNRLAKYDLKQRKLIKAANLD----HT 296 (349)
T ss_dssp ETTTCCEEEEEE--------------EECSSCEEEEEECSSCTTEEEEE----ESEEEEEETTTTEEEEEEECS----SC
T ss_pred eccCCcEEeccc--------------ccCCCcceeeEecCCCCCEEEEE----cCeEEEEECccCeEEEEEcCC----CC
Confidence 233344444433 22456788999999 99999888 479999999998887665433 34
Q ss_pred cEEEEEeCCCCEEEEEcCCCeEEEEEcCCCC
Q 043172 532 PRCLDFSPGGGFMAVGNAAGKVFLYKLNHYH 562 (564)
Q Consensus 532 V~~l~fspdg~~Lasgs~dG~V~lw~l~~~~ 562 (564)
+.+++|+|+|++|++++.++.|.+|++.+++
T Consensus 297 ~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~ 327 (349)
T 1jmx_B 297 YYCVAFDKKGDKLYLGGTFNDLAVFNPDTLE 327 (349)
T ss_dssp CCEEEECSSSSCEEEESBSSEEEEEETTTTE
T ss_pred ccceEECCCCCEEEEecCCCeEEEEeccccc
Confidence 6799999999999998889999999997653
No 148
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.90 E-value=2.4e-21 Score=197.04 Aligned_cols=254 Identities=12% Similarity=0.129 Sum_probs=182.7
Q ss_pred CCCCeeEEEEcCCCCEEEEEeC---CCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEe-CCCeEEEEECC
Q 043172 261 STGPINSVQFHRNAQLLLVAGL---DRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAG-RRKFFYSLDLV 336 (564)
Q Consensus 261 h~~~V~~l~fspdg~~l~s~s~---dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~-~dg~i~iwdl~ 336 (564)
+...+..++|+|+|+ |++++. ++.|.+|++.......+..+..+...+..++|+|+|++|++++ .++.+.+|++.
T Consensus 38 ~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~ 116 (347)
T 3hfq_A 38 ATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIA 116 (347)
T ss_dssp ECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred ccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeC
Confidence 446778899999999 555544 6899999997655455666566777889999999999999888 67999999995
Q ss_pred -CCceeeecccccc--------CCcceEEEEEcCCCCEEEEEeCCCeEEEEECC-CCcEEEE--ee--ecCcEEEEEEec
Q 043172 337 -KAKADKIGPLVGR--------EEKSLEFFEVSPDSSVIAFVGNEGYILLVSSK-TKELIGT--LK--MNGTVRSLAFAD 402 (564)
Q Consensus 337 -~~~~~~~~~~~~~--------~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~-t~~~~~~--~~--~~~~V~~l~~sp 402 (564)
++....+..+... ....+.+++|+|+|+++++...++.|.+|++. +++.... +. ....+..++|+|
T Consensus 117 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~sp 196 (347)
T 3hfq_A 117 ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSP 196 (347)
T ss_dssp TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECT
T ss_pred CCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECC
Confidence 3443333222111 11247889999999966666668899999998 5554332 22 233688999999
Q ss_pred CCCEEEEE-eCCCeEEEEECCC--Ccee--EEEeecC-----CcceEEEEECCCCCEEE-EEeCCCcEEEEeCCcccCCc
Q 043172 403 DGKQLLSS-GGDGQVYHWDLRT--RTCI--HRAVDEG-----CINGTALCTSPDGTFFA-AGSDSGIVNVYNRQEFLGGK 471 (564)
Q Consensus 403 dg~~l~s~-s~dg~V~lwD~~~--~~~~--~~~~~~~-----~~~i~~l~~sp~g~~la-sgs~dg~V~iwd~~~~~~~~ 471 (564)
+|++|+++ ..++.|++|++.. +... ..+.... ...+..++|+|+|++|+ ++..++.|.+|++... ..
T Consensus 197 dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~--g~ 274 (347)
T 3hfq_A 197 DGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTAD--GH 274 (347)
T ss_dssp TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGG--GC
T ss_pred CCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCC--Cc
Confidence 99976665 5678999999874 4432 2222111 13478899999999774 5566899999999742 23
Q ss_pred ceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEc--CCCce
Q 043172 472 RKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHI--PSYNV 518 (564)
Q Consensus 472 ~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl--~s~~~ 518 (564)
...+..+..+...+..++|+|+|++|++++.. ++.|.+|++ .++..
T Consensus 275 ~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~-~~~v~v~~~d~~tg~l 322 (347)
T 3hfq_A 275 LTLIQQISTEGDFPRDFDLDPTEAFVVVVNQN-TDNATLYARDLTSGKL 322 (347)
T ss_dssp EEEEEEEECSSSCCCEEEECTTSSEEEEEETT-TTEEEEEEECTTTCCE
T ss_pred EEEeEEEecCCCCcCeEEECCCCCEEEEEEcC-CCcEEEEEEeCCCCeE
Confidence 35666666666778999999999999988863 589999955 44544
No 149
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.90 E-value=2.6e-21 Score=195.00 Aligned_cols=244 Identities=12% Similarity=0.094 Sum_probs=178.7
Q ss_pred CCCCeeEEEEcCCCCEEEEEeC-CCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCC---eEEEEECC
Q 043172 261 STGPINSVQFHRNAQLLLVAGL-DRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRK---FFYSLDLV 336 (564)
Q Consensus 261 h~~~V~~l~fspdg~~l~s~s~-dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg---~i~iwdl~ 336 (564)
+...+ +++|+|++++|++++. ++.|.+|++..... ....+..+..++.+++|+|+|++|+++..++ .|.+||+.
T Consensus 39 ~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~ 116 (331)
T 3u4y_A 39 GYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP-KVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFL 116 (331)
T ss_dssp CCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC-EEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETT
T ss_pred cCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce-eEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECC
Confidence 44556 9999999997777666 88999999875432 1556666666766699999999999555442 89999999
Q ss_pred CCceeeeccccccCCcceEEEEEcCCCCEEEEEe-CCCe-EEEEECCCCcEE-----EEeeecCcEEEEEEecCCCEEEE
Q 043172 337 KAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVG-NEGY-ILLVSSKTKELI-----GTLKMNGTVRSLAFADDGKQLLS 409 (564)
Q Consensus 337 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~-~dg~-I~lwd~~t~~~~-----~~~~~~~~V~~l~~spdg~~l~s 409 (564)
+++.... +..+. ...+++|+|+|++|++++ .++. |.+|++.....+ ..+.....+.+++|+|+|++|++
T Consensus 117 ~~~~~~~--~~~~~--~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v 192 (331)
T 3u4y_A 117 KNKFIST--IPIPY--DAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFV 192 (331)
T ss_dssp TTEEEEE--EECCT--TEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEE
T ss_pred CCCeEEE--EECCC--CccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEE
Confidence 9887543 22222 468999999998666554 4577 999998754332 22234556899999999996665
Q ss_pred Ee-CCCeEEEEECCCCce---eEEEeecCCcceEEEEECCCCCEEEEEe-CCCcEEEEeCCcccCCccee--eEEcccc-
Q 043172 410 SG-GDGQVYHWDLRTRTC---IHRAVDEGCINGTALCTSPDGTFFAAGS-DSGIVNVYNRQEFLGGKRKP--IKTIENL- 481 (564)
Q Consensus 410 ~s-~dg~V~lwD~~~~~~---~~~~~~~~~~~i~~l~~sp~g~~lasgs-~dg~V~iwd~~~~~~~~~~~--~~~~~~~- 481 (564)
++ .++.|++||+.+++. +..+... ..+..++|+|+|++|++++ .++.|.+||+.++ +. +..+..+
T Consensus 193 ~~~~~~~v~v~d~~~~~~~~~~~~~~~~--~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~-----~~~~~~~~~~~~ 265 (331)
T 3u4y_A 193 ANLIGNSIGILETQNPENITLLNAVGTN--NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSG-----TLSFVKSFGHGL 265 (331)
T ss_dssp EETTTTEEEEEECSSTTSCEEEEEEECS--SCCCCEEECTTSSEEEEECSSEEEEEEEETTTT-----EEEEEEEEECCC
T ss_pred EeCCCCeEEEEECCCCcccceeeeccCC--CCCceEEECCCCCEEEEEEcCCCEEEEEECCCC-----ceeeeccccccc
Confidence 55 588999999998887 6666543 3557899999999776665 5778999999875 33 3332211
Q ss_pred ---cc---ceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCce
Q 043172 482 ---TT---KVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNV 518 (564)
Q Consensus 482 ---~~---~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~ 518 (564)
.. ....++|+|+|++|++++.. ++.|.+|++.....
T Consensus 266 ~~~~~~~~~~~~~~~spdg~~l~v~~~~-~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 266 LIDPRPLFGANQMALNKTETKLFISANI-SRELKVFTISGKVV 307 (331)
T ss_dssp CCCCGGGTTCCCEEECTTSSEEEEEETT-TTEEEEEETTSCEE
T ss_pred ccCCCCcccccceEECCCCCEEEEecCC-CCcEEEEEecCCcc
Confidence 22 23558999999999887763 67999999987554
No 150
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.89 E-value=2.8e-20 Score=190.29 Aligned_cols=271 Identities=12% Similarity=0.114 Sum_probs=187.7
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCC----CcEEEEEecCCCC--ceeEEEEeCCcCeEEEEEeeCCCEEEEEe-CCCeEEEE
Q 043172 261 STGPINSVQFHRNAQLLLVAGLD----RRLRFFQIDGKRN--TKIQSIFLEDCPVRKASFLPDGSQAIIAG-RRKFFYSL 333 (564)
Q Consensus 261 h~~~V~~l~fspdg~~l~s~s~d----g~I~lwd~~~~~~--~~~~~~~~~~~~I~~l~fspdg~~l~s~~-~dg~i~iw 333 (564)
|...+..++|+|+|++|++++.+ +.|.+|+++.... ..+.....+...+..+++ ++++|++++ .++.|.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 56778889999999999999875 7999999986422 334444445556677777 888888877 57899999
Q ss_pred ECCCCcee-eecc---cccc-------CCcceEEEEEcCCCCEEEEEeC-CCeEEEEECCCCc-------E-------EE
Q 043172 334 DLVKAKAD-KIGP---LVGR-------EEKSLEFFEVSPDSSVIAFVGN-EGYILLVSSKTKE-------L-------IG 387 (564)
Q Consensus 334 dl~~~~~~-~~~~---~~~~-------~~~~v~~~~~spdg~~la~~~~-dg~I~lwd~~t~~-------~-------~~ 387 (564)
++...... .+.. ..+. ....+.+++|+|+|++|++++. ++.|.+|++.... + ..
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~ 205 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF 205 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence 99754321 1111 1110 1123578999999997776654 7899999887543 2 11
Q ss_pred EeeecCcEEEEEEecCCCEEEEEe-CCCeEEEEECCCCcee--EEEee--cCCcceEEEEECCCCCEEEEEeC--CCcEE
Q 043172 388 TLKMNGTVRSLAFADDGKQLLSSG-GDGQVYHWDLRTRTCI--HRAVD--EGCINGTALCTSPDGTFFAAGSD--SGIVN 460 (564)
Q Consensus 388 ~~~~~~~V~~l~~spdg~~l~s~s-~dg~V~lwD~~~~~~~--~~~~~--~~~~~i~~l~~sp~g~~lasgs~--dg~V~ 460 (564)
.+.....+..++|+|+|++|++++ .++.|.+|++.++... ..+.. .+......++|+|+|++|+++.. ++.|.
T Consensus 206 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~ 285 (361)
T 3scy_A 206 KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVA 285 (361)
T ss_dssp ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEE
T ss_pred ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEE
Confidence 222455688999999999888777 5899999999876542 22221 12234579999999998877665 48999
Q ss_pred EEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEc--CCCceeccCCCCCCCCCCcEEEEEe
Q 043172 461 VYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHI--PSYNVFSNWPPANRNLQYPRCLDFS 538 (564)
Q Consensus 461 iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl--~s~~~~~~~~~~~~~~~~V~~l~fs 538 (564)
||++... ......+..+.. ...+.+++|+|+|++|++++.. ++.|.+|.+ .++...... ...+...+.|+.|.
T Consensus 286 v~~~~~~-~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~-~~~v~v~~~d~~~g~~~~~~--~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 286 IFKVDET-NGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRD-TNVIQIFERDQATGLLTDIK--KDIKVDKPVCLKFV 360 (361)
T ss_dssp EEEECTT-TCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETT-TTEEEEEEECTTTCCEEECS--CCEECSSEEEEEEE
T ss_pred EEEEcCC-CCcEEEeeEecC-CCCCceEEECCCCCEEEEEECC-CCCEEEEEEECCCCcEeecc--eeeeCCCCeEEEEc
Confidence 9998621 012245555554 5678899999999999988853 789999655 466554422 12234568899886
No 151
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.89 E-value=1.4e-21 Score=192.08 Aligned_cols=232 Identities=13% Similarity=0.118 Sum_probs=176.1
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecC-CCCceeEEEEeC-CcCeEEEEEeeCCCEEEEEeC----CCeEEEE
Q 043172 260 SSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDG-KRNTKIQSIFLE-DCPVRKASFLPDGSQAIIAGR----RKFFYSL 333 (564)
Q Consensus 260 ~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~-~~~~~~~~~~~~-~~~I~~l~fspdg~~l~s~~~----dg~i~iw 333 (564)
.|...|.+++|+|++++|++++ ++.|.+|++.+ .. .......+ ...+.+++|+|+|++|++++. ...|++|
T Consensus 39 ~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~ 115 (297)
T 2ojh_A 39 QTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPS--PEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLL 115 (297)
T ss_dssp EESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCS--CEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEE
T ss_pred cCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCC--ceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEE
Confidence 3788999999999999999987 88999999986 43 33333333 367889999999999999983 3466666
Q ss_pred ECCCCceeeeccccccCCcceEEEEEcCCCCEEE-EEeCCCeEEEEEC--CCCcEEEEeeecCcEEEEEEecCCCEEEEE
Q 043172 334 DLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIA-FVGNEGYILLVSS--KTKELIGTLKMNGTVRSLAFADDGKQLLSS 410 (564)
Q Consensus 334 dl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la-~~~~dg~I~lwd~--~t~~~~~~~~~~~~V~~l~~spdg~~l~s~ 410 (564)
++.++.... +..+. .+..++|+|++++|+ +++.++.+.||++ .++.......+...+.+++|+|+++.|+++
T Consensus 116 ~~~~~~~~~---~~~~~--~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 190 (297)
T 2ojh_A 116 PSTGGTPRL---MTKNL--PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFN 190 (297)
T ss_dssp ETTCCCCEE---CCSSS--SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEE
T ss_pred ECCCCceEE---eecCC--CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEE
Confidence 766665432 22222 378899999999887 6778898888885 455554444477889999999999988876
Q ss_pred e-CCCeEEEEECC-CCceeEEEeecCCcceEEEEECCCCCEEEEEeCC-----------CcEEEEeCCcccCCcceeeEE
Q 043172 411 G-GDGQVYHWDLR-TRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDS-----------GIVNVYNRQEFLGGKRKPIKT 477 (564)
Q Consensus 411 s-~dg~V~lwD~~-~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~d-----------g~V~iwd~~~~~~~~~~~~~~ 477 (564)
+ .++.+.+|++. .+..+..+.. +...+..++|+|+|++|++++.+ +.|.+||+... ....+..
T Consensus 191 ~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~---~~~~~~~ 266 (297)
T 2ojh_A 191 SSRTGQMQIWRVRVDGSSVERITD-SAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGG---NVETLFD 266 (297)
T ss_dssp ECTTSSCEEEEEETTSSCEEECCC-CSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSC---SCEEEEE
T ss_pred ecCCCCccEEEECCCCCCcEEEec-CCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCC---Cceeeec
Confidence 6 48889999886 4445555543 34567899999999999988765 56999999874 2234555
Q ss_pred ccccccceeEEEEcCCCcEEEEEecC
Q 043172 478 IENLTTKVDFMKFNNDAQILAICSTM 503 (564)
Q Consensus 478 ~~~~~~~I~~l~fspdg~~La~~s~~ 503 (564)
+.+|...+.+++|+|+|++|++++..
T Consensus 267 ~~~~~~~~~~~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 267 LFGGQGTMNSPNWSPDGDEFAYVRYF 292 (297)
T ss_dssp EEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred cCCCCcccccceECCCCCEEEEEEec
Confidence 55778889999999999999998873
No 152
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=9.5e-22 Score=219.70 Aligned_cols=274 Identities=13% Similarity=0.098 Sum_probs=193.2
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCcee-EEEEeCC-----------------cCeEEEEEeeCCCEEEEEe
Q 043172 264 PINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKI-QSIFLED-----------------CPVRKASFLPDGSQAIIAG 325 (564)
Q Consensus 264 ~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~-~~~~~~~-----------------~~I~~l~fspdg~~l~s~~ 325 (564)
.+..+.|+ |..+++++.++ | +||+.++.. + ..+..+. ..|.+++|+|+ .+++++.
T Consensus 27 ~~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~--~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~ 99 (706)
T 2z3z_A 27 YVVGLQWM--GDNYVFIEGDD-L-VFNKANGKS--AQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT 99 (706)
T ss_dssp -CTTCEEE--TTEEEEEETTE-E-EEEC---------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE
T ss_pred cCCCCcCc--CCeEEEEeCCc-E-EEECCCCcE--eeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE
Confidence 35667888 66777777787 8 999875543 1 1222221 46999999999 6766664
Q ss_pred CCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCC-----CcEEEEee-ecCc-----
Q 043172 326 RRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKT-----KELIGTLK-MNGT----- 394 (564)
Q Consensus 326 ~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t-----~~~~~~~~-~~~~----- 394 (564)
++.|++||+.+++...+. .+. ..+.+++|||+|++|+++ .++.|++|++.+ ++...... +...
T Consensus 100 -~~~i~~~d~~~~~~~~l~---~~~-~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~ 173 (706)
T 2z3z_A 100 -QGGLVGFDMLARKVTYLF---DTN-EETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQ 173 (706)
T ss_dssp -TTEEEEEETTTTEEEEEE---CCT-TCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESS
T ss_pred -CCEEEEEECCCCceEEcc---CCc-ccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEccc
Confidence 599999999998765432 222 246779999999999985 679999999998 87765444 2222
Q ss_pred ---------EEEEEEecCCCEEEEEe---------------------------------CCCeEEEEECCCCceeEEEee
Q 043172 395 ---------VRSLAFADDGKQLLSSG---------------------------------GDGQVYHWDLRTRTCIHRAVD 432 (564)
Q Consensus 395 ---------V~~l~~spdg~~l~s~s---------------------------------~dg~V~lwD~~~~~~~~~~~~ 432 (564)
+.+++|+|||++|++++ .+..|++||+.+++.......
T Consensus 174 ~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~ 253 (706)
T 2z3z_A 174 AVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTG 253 (706)
T ss_dssp CCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCC
T ss_pred chhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccC
Confidence 48999999999999987 457899999998876543322
Q ss_pred -cCCcceEEEEECCCCCEEEEEeCCC-----cEEEEeCCcccCCcceeeEEcc--cccc---ceeEEEEcC--CCcEEEE
Q 043172 433 -EGCINGTALCTSPDGTFFAAGSDSG-----IVNVYNRQEFLGGKRKPIKTIE--NLTT---KVDFMKFNN--DAQILAI 499 (564)
Q Consensus 433 -~~~~~i~~l~~sp~g~~lasgs~dg-----~V~iwd~~~~~~~~~~~~~~~~--~~~~---~I~~l~fsp--dg~~La~ 499 (564)
.+...+.+++|+|+|++|++++.++ .|.+||+.++ .....+. .+.. .+.+++|+| +|++|++
T Consensus 254 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g-----~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~ 328 (706)
T 2z3z_A 254 EPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETG-----RFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQ 328 (706)
T ss_dssp SCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTC-----CEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEE
T ss_pred CCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCC-----ceeeEEEEccCCCeECccCCceeecCCCCEEEEE
Confidence 2344678999999999999987765 8999999874 2332222 1222 346789999 9999888
Q ss_pred EecCCCCeEEEEEcC-CCceeccCCCCCCCCCCcEE-EEEeCCCCEEEEEc-CCC----eEEEEEcCC
Q 043172 500 CSTMKKNSLKLIHIP-SYNVFSNWPPANRNLQYPRC-LDFSPGGGFMAVGN-AAG----KVFLYKLNH 560 (564)
Q Consensus 500 ~s~~~d~~I~lwdl~-s~~~~~~~~~~~~~~~~V~~-l~fspdg~~Lasgs-~dG----~V~lw~l~~ 560 (564)
++. ++.++||.+. ++.....+.. +...+.+ ++|+|+|+.|++++ .++ .|+.|++.+
T Consensus 329 ~~~--~g~~~l~~~~~~~~~~~~l~~---~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~ 391 (706)
T 2z3z_A 329 SRR--DGWNHLYLYDTTGRLIRQVTK---GEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKG 391 (706)
T ss_dssp ECT--TSSCEEEEEETTSCEEEECCC---SSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTC
T ss_pred Ecc--CCccEEEEEECCCCEEEecCC---CCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCC
Confidence 877 7888888876 5555544432 3355666 89999999876555 444 566666654
No 153
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.89 E-value=1.2e-21 Score=201.94 Aligned_cols=282 Identities=12% Similarity=0.096 Sum_probs=191.4
Q ss_pred EEEcCCCCEEEEEeC-CCc--EEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeec
Q 043172 268 VQFHRNAQLLLVAGL-DRR--LRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIG 344 (564)
Q Consensus 268 l~fspdg~~l~s~s~-dg~--I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~ 344 (564)
.+|||||++|++++. ++. |.+|++.+ ....+....+...+..++|+|+|++|++++.++.|++||+.+++...+.
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~--g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~ 118 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNT--QVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVY 118 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTT--CEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEE
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCC--CceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeee
Confidence 899999999998887 675 66666654 3344444455555557789999999999999999999999999876554
Q ss_pred cccccCCcceE--EEEEcCCCCEEEEEe----------------------CCCeEEEEECCCCcEEEEeeecCcEEEEEE
Q 043172 345 PLVGREEKSLE--FFEVSPDSSVIAFVG----------------------NEGYILLVSSKTKELIGTLKMNGTVRSLAF 400 (564)
Q Consensus 345 ~~~~~~~~~v~--~~~~spdg~~la~~~----------------------~dg~I~lwd~~t~~~~~~~~~~~~V~~l~~ 400 (564)
..... .+. ...++|++.+++... .++.|.+||+.+++......+...+..++|
T Consensus 119 ~~~~~---~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~ 195 (388)
T 3pe7_A 119 QVPAE---WVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIY 195 (388)
T ss_dssp ECCTT---EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEE
T ss_pred echhh---cccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEE
Confidence 33321 232 234589999887432 347899999999987766667788999999
Q ss_pred ec-CCCEEEEEeCC------CeEEEEECCCCceeEEEeecC-CcceEEEEECCCCCEEEEEeC-CC----cEEEEeCCcc
Q 043172 401 AD-DGKQLLSSGGD------GQVYHWDLRTRTCIHRAVDEG-CINGTALCTSPDGTFFAAGSD-SG----IVNVYNRQEF 467 (564)
Q Consensus 401 sp-dg~~l~s~s~d------g~V~lwD~~~~~~~~~~~~~~-~~~i~~l~~sp~g~~lasgs~-dg----~V~iwd~~~~ 467 (564)
+| +|+.|+.++.. ..|+++|+..+.. ..+.... ...+..++|+|+|+.|+..+. ++ .|.+||+.++
T Consensus 196 sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g 274 (388)
T 3pe7_A 196 RPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETL 274 (388)
T ss_dssp ETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTC
T ss_pred CCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCC
Confidence 99 99988877653 3788889876543 3333332 235678899999997766543 22 3999999875
Q ss_pred cCCcceeeEEcccccc---ceeEEEEcCCCcEEEEEec-------CCCCeEEEEEcCCCceeccCCCCCC--------CC
Q 043172 468 LGGKRKPIKTIENLTT---KVDFMKFNNDAQILAICST-------MKKNSLKLIHIPSYNVFSNWPPANR--------NL 529 (564)
Q Consensus 468 ~~~~~~~~~~~~~~~~---~I~~l~fspdg~~La~~s~-------~~d~~I~lwdl~s~~~~~~~~~~~~--------~~ 529 (564)
..+.+..+..+.. ....+.|+|||+.|++... ..+..|++|++.++..... ..... ..
T Consensus 275 ---~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l-~~~~~~~~~~~~~~~ 350 (388)
T 3pe7_A 275 ---ENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRV-ARHDTSWKVFEGDRQ 350 (388)
T ss_dssp ---CEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEE-EECCCCCCCBTTBSS
T ss_pred ---ceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEe-ccccCcccccccccc
Confidence 2233433333111 1223479999998886532 2267899999988765332 11111 01
Q ss_pred CCcEEEEEeCCCCEEEEEc-CCCeEEEEEcC
Q 043172 530 QYPRCLDFSPGGGFMAVGN-AAGKVFLYKLN 559 (564)
Q Consensus 530 ~~V~~l~fspdg~~Lasgs-~dG~V~lw~l~ 559 (564)
..+.+++|||||++|+.++ .+|...||.+.
T Consensus 351 ~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 351 VTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp TTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred cCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 1467889999999887655 57777777654
No 154
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.89 E-value=1e-20 Score=191.90 Aligned_cols=240 Identities=14% Similarity=0.124 Sum_probs=190.3
Q ss_pred cCeEEEEEeeCCCEEEEEeC-------CCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEe-CCCeEEEE
Q 043172 307 CPVRKASFLPDGSQAIIAGR-------RKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVG-NEGYILLV 378 (564)
Q Consensus 307 ~~I~~l~fspdg~~l~s~~~-------dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~-~dg~I~lw 378 (564)
..+..++|+|+|++|++++. ++.|.+||+.+++........ . .+..++|+|+|+++++++ .++.|.+|
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~--~--~~~~~~~s~dg~~l~v~~~~~~~v~~~ 116 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND--L--KPFGATINNTTQTLWFGNTVNSAVTAI 116 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES--S--CCCSEEEETTTTEEEEEETTTTEEEEE
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC--C--CcceEEECCCCCEEEEEecCCCEEEEE
Confidence 45789999999999988874 568999999998875543321 1 356799999999666554 47999999
Q ss_pred ECCCCcEEEEeeecC----------cEEEEEEecCCCEEEEEe--CCCeEEEEECCCCceeEEEeecCCcceEEEEECCC
Q 043172 379 SSKTKELIGTLKMNG----------TVRSLAFADDGKQLLSSG--GDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPD 446 (564)
Q Consensus 379 d~~t~~~~~~~~~~~----------~V~~l~~spdg~~l~s~s--~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~ 446 (564)
|+.+++.+..+.... .+.+++|+|+++++++++ .++.|++||+.+++.+..+...+. .+..++|+|+
T Consensus 117 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~s~d 195 (353)
T 3vgz_A 117 DAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGK-MSTGLALDSE 195 (353)
T ss_dssp ETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCT-TCCCCEEETT
T ss_pred eCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCC-ccceEEECCC
Confidence 999999988877321 278999999999888776 478999999999988877763332 4578999999
Q ss_pred CCEEEEEeCCCcEEEEeCCcccCCcceeeEEccc----cccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccC
Q 043172 447 GTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIEN----LTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNW 522 (564)
Q Consensus 447 g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~----~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~ 522 (564)
|++|++++.++.|.+||..++ +.+..+.. +...+..++|+|+|++|++++.. ++.|.+||+.+++....+
T Consensus 196 g~~l~~~~~~~~i~~~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-~~~v~~~d~~~~~~~~~~ 269 (353)
T 3vgz_A 196 GKRLYTTNADGELITIDTADN-----KILSRKKLLDDGKEHFFINISLDTARQRAFITDSK-AAEVLVVDTRNGNILAKV 269 (353)
T ss_dssp TTEEEEECTTSEEEEEETTTT-----EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESS-SSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCC-----eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCC-CCEEEEEECCCCcEEEEE
Confidence 999999999999999999886 66655543 45567889999999988887753 689999999999887766
Q ss_pred CCCCCCCCCcEEEEEeCCCCEEEEEc-CCCeEEEEEcCCCC
Q 043172 523 PPANRNLQYPRCLDFSPGGGFMAVGN-AAGKVFLYKLNHYH 562 (564)
Q Consensus 523 ~~~~~~~~~V~~l~fspdg~~Lasgs-~dG~V~lw~l~~~~ 562 (564)
+... ..+++|+|+|++|++++ .++.|.+|++.+.+
T Consensus 270 ~~~~-----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~ 305 (353)
T 3vgz_A 270 AAPE-----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYK 305 (353)
T ss_dssp ECSS-----CCCEEEETTTTEEEEEETTTTEEEEEETTTTE
T ss_pred EcCC-----CceEEECCCCCEEEEEECCCCeEEEEECCCCe
Confidence 5432 25699999999766555 68999999987653
No 155
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.89 E-value=4.3e-22 Score=200.44 Aligned_cols=245 Identities=11% Similarity=0.032 Sum_probs=184.7
Q ss_pred CeeEEEEcCCCCEEE-EEeCCCcEEEEEecCCCCceeEEEEeC-----CcCeEEEEEeeCCCEEEEEe------------
Q 043172 264 PINSVQFHRNAQLLL-VAGLDRRLRFFQIDGKRNTKIQSIFLE-----DCPVRKASFLPDGSQAIIAG------------ 325 (564)
Q Consensus 264 ~V~~l~fspdg~~l~-s~s~dg~I~lwd~~~~~~~~~~~~~~~-----~~~I~~l~fspdg~~l~s~~------------ 325 (564)
.+.+++|+|++++++ +++.++.|.+|++... ..+..+... ...+.+++|+|+|++|++++
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~ 112 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTG--ETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEV 112 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTC--CEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEE
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCC--CeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccc
Confidence 488999999998665 5556789999998743 344444432 12577899999999999886
Q ss_pred CCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeeecCcEEEEEEecCCC
Q 043172 326 RRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLKMNGTVRSLAFADDGK 405 (564)
Q Consensus 326 ~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~ 405 (564)
.++.|.+||+.+++....... . ..+.+++|+|+|++|+++ ++.|.+||+.+++.+..+........+.|+|++.
T Consensus 113 ~~~~i~v~d~~~~~~~~~~~~--~--~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~ 186 (337)
T 1pby_B 113 QPTRVALYDAETLSRRKAFEA--P--RQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVL 186 (337)
T ss_dssp CCCEEEEEETTTTEEEEEEEC--C--SSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCC
T ss_pred cCceEEEEECCCCcEEEEEeC--C--CCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCcc
Confidence 579999999998876543222 1 246778999999988887 6889999999999887776332112347899988
Q ss_pred EEEEEeCC-C-----------------------eEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEE
Q 043172 406 QLLSSGGD-G-----------------------QVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNV 461 (564)
Q Consensus 406 ~l~s~s~d-g-----------------------~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~i 461 (564)
.|++++.. + .|++||+.+++........+...+.+++|+|+|++++++ ++.|.+
T Consensus 187 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~ 264 (337)
T 1pby_B 187 AVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLES 264 (337)
T ss_dssp CCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEE
T ss_pred EEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEE
Confidence 76655432 2 478999999887522222333457789999999999888 689999
Q ss_pred EeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCC
Q 043172 462 YNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPAN 526 (564)
Q Consensus 462 wd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~ 526 (564)
||+.++ +.+..+.. ...+.+++|+|+|++|++++. ++.|++|++.+++....++...
T Consensus 265 ~d~~~~-----~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~--~~~i~v~d~~~~~~~~~~~~~~ 321 (337)
T 1pby_B 265 FDLEKN-----ASIKRVPL-PHSYYSVNVSTDGSTVWLGGA--LGDLAAYDAETLEKKGQVDLPG 321 (337)
T ss_dssp EETTTT-----EEEEEEEC-SSCCCEEEECTTSCEEEEESB--SSEEEEEETTTCCEEEEEECGG
T ss_pred EECCCC-----cCcceecC-CCceeeEEECCCCCEEEEEcC--CCcEEEEECcCCcEEEEEEcCC
Confidence 999876 66666653 356789999999999998866 8999999999998877665543
No 156
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.88 E-value=1.8e-20 Score=197.18 Aligned_cols=296 Identities=11% Similarity=0.061 Sum_probs=198.1
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCC--------ceeE-----EEEeCCcCeEEEEEeeCCCEEE----E
Q 043172 261 STGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRN--------TKIQ-----SIFLEDCPVRKASFLPDGSQAI----I 323 (564)
Q Consensus 261 h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~--------~~~~-----~~~~~~~~I~~l~fspdg~~l~----s 323 (564)
+...++.+++++++.+|++++.++ ++||+...... ..+. ....+...|.+++|+|+|++|+ +
T Consensus 35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~s 113 (434)
T 2oit_A 35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMS 113 (434)
T ss_dssp CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEE
T ss_pred CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEec
Confidence 345789999999999999999888 89987642100 0111 1122456799999999999999 6
Q ss_pred EeCCCeEEEEECCCC-----c---ee-eeccccccCCcceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCcEEEEee-ec
Q 043172 324 AGRRKFFYSLDLVKA-----K---AD-KIGPLVGREEKSLEFFEVSPD-SSVIAFVGNEGYILLVSSKTKELIGTLK-MN 392 (564)
Q Consensus 324 ~~~dg~i~iwdl~~~-----~---~~-~~~~~~~~~~~~v~~~~~spd-g~~la~~~~dg~I~lwd~~t~~~~~~~~-~~ 392 (564)
++.++.|+|||+.++ + .. .+..+.+|. ..|.+++|+|+ +.+|++++.||.|++||++++..+.... |.
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~ 192 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAG-GMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPST 192 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGG-GSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGG
T ss_pred cCCCceEEEEEccccccCCcCCcceeeeeeccCCCC-CceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCC
Confidence 778999999998764 1 11 122344444 47999999998 8899999999999999999986654444 78
Q ss_pred CcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeec------CCcceEEEEECCCCCEEEEE-eCCC------cE
Q 043172 393 GTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDE------GCINGTALCTSPDGTFFAAG-SDSG------IV 459 (564)
Q Consensus 393 ~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~------~~~~i~~l~~sp~g~~lasg-s~dg------~V 459 (564)
..|++++|+|+|++|++|+.||.|++||++ +.....+..+ +...+.+++|++++.++++. +.+| .+
T Consensus 193 ~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v 271 (434)
T 2oit_A 193 VAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDV 271 (434)
T ss_dssp GCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEE
T ss_pred CceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCce
Confidence 899999999999999999999999999998 5555544332 23478999999988777553 3443 38
Q ss_pred EEEeCCcccCCcceeeEEcc-------ccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCC-----------ceecc
Q 043172 460 NVYNRQEFLGGKRKPIKTIE-------NLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSY-----------NVFSN 521 (564)
Q Consensus 460 ~iwd~~~~~~~~~~~~~~~~-------~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~-----------~~~~~ 521 (564)
.+|++.......+.....+. ....+...+.+-++.+++++++.. .+.|.|+..... .....
T Consensus 272 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~-s~dv~vl~~~~~~~~~~~~~~~d~~ra~ 350 (434)
T 2oit_A 272 VMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAA-STEVSILARQSDQINWESWLLEDSSRAE 350 (434)
T ss_dssp EEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETT-CSBCEEEEECTTSSCEEEEEECGGGCCB
T ss_pred EEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCC-CCceeEEEecCCCCccEEEecccccccc
Confidence 99999864211111212211 222233334445788888877763 455666654321 11112
Q ss_pred CCCCC-CCCCCcEEEEEe---------------CCCCEEEEEcCCCeEEEEEcCC
Q 043172 522 WPPAN-RNLQYPRCLDFS---------------PGGGFMAVGNAAGKVFLYKLNH 560 (564)
Q Consensus 522 ~~~~~-~~~~~V~~l~fs---------------pdg~~Lasgs~dG~V~lw~l~~ 560 (564)
+|... .....+..+++. |-...|.+-+.+|.+..|.+-+
T Consensus 351 lP~~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~~ 405 (434)
T 2oit_A 351 LPVTDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMIN 405 (434)
T ss_dssp CCBCTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEEEE
T ss_pred ccCCCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEEEe
Confidence 22211 112223334432 1224678888999999998754
No 157
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.88 E-value=1.6e-20 Score=192.87 Aligned_cols=277 Identities=12% Similarity=0.067 Sum_probs=187.8
Q ss_pred EEEEEeCC--CcEEEEEecCCCCce--eEEEE-eCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECC-CCceeeecccccc
Q 043172 276 LLLVAGLD--RRLRFFQIDGKRNTK--IQSIF-LEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLV-KAKADKIGPLVGR 349 (564)
Q Consensus 276 ~l~s~s~d--g~I~lwd~~~~~~~~--~~~~~-~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~-~~~~~~~~~~~~~ 349 (564)
+|++|+.. +.|.+|.++...... +.... .....+..++|+|+|++|++++.+ .|.+|++. +++...+......
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence 45666653 578888886544332 22221 133467899999999999988877 99999997 7765443222211
Q ss_pred CCcceEEEEEcCCCCE--EEEEe-------------CCCeEEEEECC-CCcEEEEee-----ecCcEEEEEEecCCCEEE
Q 043172 350 EEKSLEFFEVSPDSSV--IAFVG-------------NEGYILLVSSK-TKELIGTLK-----MNGTVRSLAFADDGKQLL 408 (564)
Q Consensus 350 ~~~~v~~~~~spdg~~--la~~~-------------~dg~I~lwd~~-t~~~~~~~~-----~~~~V~~l~~spdg~~l~ 408 (564)
. .+.+++|+|+|++ ++++. .+|.+.+|++. .++....+. +...+.+++|+|+|++|+
T Consensus 83 g--~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~ 160 (365)
T 1jof_A 83 G--HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLY 160 (365)
T ss_dssp S--SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEE
T ss_pred C--CCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEE
Confidence 1 2345889999995 44442 58899999997 466554443 345799999999999888
Q ss_pred EEeC-CCeEEEEECC-CCceeE--EEeec-CCcceEEEEECCCCCEEEEEeC-CCcEEEEeCCcccCCcce----eeEEc
Q 043172 409 SSGG-DGQVYHWDLR-TRTCIH--RAVDE-GCINGTALCTSPDGTFFAAGSD-SGIVNVYNRQEFLGGKRK----PIKTI 478 (564)
Q Consensus 409 s~s~-dg~V~lwD~~-~~~~~~--~~~~~-~~~~i~~l~~sp~g~~lasgs~-dg~V~iwd~~~~~~~~~~----~~~~~ 478 (564)
++.. ++.|++|++. +++... .+... +...+..++|+|+|++|++++. ++.|.+|++.... +... .+..+
T Consensus 161 ~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~-g~~~~~~~~~~~~ 239 (365)
T 1jof_A 161 SADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPAT-HMPVYTHHSFPLI 239 (365)
T ss_dssp EEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTT-CCEEEEEEEEESS
T ss_pred EEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCC-CcEEEccceEEcC
Confidence 7764 6799999998 676532 22211 2345789999999999888775 7899999875310 1111 12222
Q ss_pred cc----ccc------ceeEEE-EcCCCcEEEEEecCCC----CeEEEEEcC-CCceec---cCCCCCCCCCCcEEEEEeC
Q 043172 479 EN----LTT------KVDFMK-FNNDAQILAICSTMKK----NSLKLIHIP-SYNVFS---NWPPANRNLQYPRCLDFSP 539 (564)
Q Consensus 479 ~~----~~~------~I~~l~-fspdg~~La~~s~~~d----~~I~lwdl~-s~~~~~---~~~~~~~~~~~V~~l~fsp 539 (564)
.. +.. .+..++ |+|||++|++++...+ +.|.+|++. ++.... ..+. +...+..++|+|
T Consensus 240 ~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~---~~~~~~~~a~sp 316 (365)
T 1jof_A 240 PPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT---PTSGGHSNAVSP 316 (365)
T ss_dssp CTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC---SSCCTTCCCEEE
T ss_pred CCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeec---CCCCcccceecC
Confidence 21 122 588999 9999999988775322 289999996 555432 1211 123456789999
Q ss_pred ---CCCEEEEEcCC-CeEEEEEcC
Q 043172 540 ---GGGFMAVGNAA-GKVFLYKLN 559 (564)
Q Consensus 540 ---dg~~Lasgs~d-G~V~lw~l~ 559 (564)
+|++|++++.+ +.|.+|++.
T Consensus 317 ~~~dg~~l~v~~~~~~~v~v~~~~ 340 (365)
T 1jof_A 317 CPWSDEWMAITDDQEGWLEIYRWK 340 (365)
T ss_dssp CTTCTTEEEEECSSSCEEEEEEEE
T ss_pred CCcCCCEEEEEEcCCCeEEEEEEc
Confidence 89999999864 899999875
No 158
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.87 E-value=4.2e-21 Score=215.04 Aligned_cols=276 Identities=13% Similarity=0.099 Sum_probs=193.4
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCc---CeEEEEEeeCCCEEEEEeC---------CCeEEEEE
Q 043172 267 SVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDC---PVRKASFLPDGSQAIIAGR---------RKFFYSLD 334 (564)
Q Consensus 267 ~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~---~I~~l~fspdg~~l~s~~~---------dg~i~iwd 334 (564)
+++|+|+|+++++ +.|++|++|++.++. ....+..+.. .+.+++|||||++|++++. ++.|++||
T Consensus 20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d 96 (719)
T 1z68_A 20 FPNWISGQEYLHQ-SADNNIVLYNIETGQ--SYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYD 96 (719)
T ss_dssp CCEESSSSEEEEE-CTTSCEEEEESSSCC--EEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred ccEECCCCeEEEE-cCCCCEEEEEcCCCc--EEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEE
Confidence 7899999965554 469999999998653 3444443333 4899999999999998875 68999999
Q ss_pred CCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee--ecCcE-----------------
Q 043172 335 LVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK--MNGTV----------------- 395 (564)
Q Consensus 335 l~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~--~~~~V----------------- 395 (564)
+.+++......+. ..+..++|||||+.||++. ++.|++|++.+++...... +...|
T Consensus 97 ~~~g~~~~~~~l~----~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~ 171 (719)
T 1z68_A 97 LSNGEFVRGNELP----RPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATK 171 (719)
T ss_dssp TTTTEECCSSCCC----SSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSS
T ss_pred CCCCccccceecC----cccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCc
Confidence 9998862112232 2477899999999999985 6899999999887754332 22222
Q ss_pred EEEEEecCCCEEEEEeCCC----------------------------------eEEEEECCCCcee--EEEe-----ecC
Q 043172 396 RSLAFADDGKQLLSSGGDG----------------------------------QVYHWDLRTRTCI--HRAV-----DEG 434 (564)
Q Consensus 396 ~~l~~spdg~~l~s~s~dg----------------------------------~V~lwD~~~~~~~--~~~~-----~~~ 434 (564)
.+++|+|||+.|++++.|. .|++||+.+++.. ..+. ..+
T Consensus 172 ~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 251 (719)
T 1z68_A 172 YALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASS 251 (719)
T ss_dssp CCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTS
T ss_pred ccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCC
Confidence 4899999999999987542 7899999987653 1221 124
Q ss_pred CcceEEEEECCCCCEEEEEeCC----CcEEEEe----CCcccCCcceeeEEc----ccccccee-----EEEEcCCCcEE
Q 043172 435 CINGTALCTSPDGTFFAAGSDS----GIVNVYN----RQEFLGGKRKPIKTI----ENLTTKVD-----FMKFNNDAQIL 497 (564)
Q Consensus 435 ~~~i~~l~~sp~g~~lasgs~d----g~V~iwd----~~~~~~~~~~~~~~~----~~~~~~I~-----~l~fspdg~~L 497 (564)
...+..++|+|+++++++.... ..|.+|| ..++ ++...+ ..+...+. .+.|+|||+.|
T Consensus 252 ~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l 326 (719)
T 1z68_A 252 DYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTW-----DCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISY 326 (719)
T ss_dssp CEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSE-----ECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCE
T ss_pred cceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCC-----ceEEEEecccccCCceEccccCCccEECCCCCeE
Confidence 4467899999998877775433 2488899 6664 343333 35666676 89999999977
Q ss_pred EEEecCCCC--eEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCC-----CeEEEEEcCC
Q 043172 498 AICSTMKKN--SLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAA-----GKVFLYKLNH 560 (564)
Q Consensus 498 a~~s~~~d~--~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~d-----G~V~lw~l~~ 560 (564)
++.+...++ .|.+|++.++... .+. .+...+..+.++ +++.|+..+.+ +.++||.+..
T Consensus 327 ~~~~~~~~g~~~l~~~~~~~~~~~-~lt---~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 327 YKIFSDKDGYKHIHYIKDTVENAI-QIT---SGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp EEEEECTTSCEEEEEESSCSTTCE-ECS---CSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred EEEEEccCCceEEEEEECCCCceE-ecc---cCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 663322244 5677777665532 221 122457777888 77777766554 8889998753
No 159
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.85 E-value=6.5e-20 Score=192.97 Aligned_cols=243 Identities=14% Similarity=0.131 Sum_probs=169.0
Q ss_pred CcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCC-----------ceeee-ccccccCCcceEEEEEcCCCCEEE----EE
Q 043172 306 DCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKA-----------KADKI-GPLVGREEKSLEFFEVSPDSSVIA----FV 369 (564)
Q Consensus 306 ~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~-----------~~~~~-~~~~~~~~~~v~~~~~spdg~~la----~~ 369 (564)
...+..+++++++.++++++.++ +++|+.... ..... .....+....|.+++|+|+|++|+ ++
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence 34578899999999999998887 888875321 00000 000011223699999999999999 67
Q ss_pred eCCCeEEEEECCCC--------cE---EEEee-ecCcEEEEEEecC-CCEEEEEeCCCeEEEEECCCCceeEEEeecCCc
Q 043172 370 GNEGYILLVSSKTK--------EL---IGTLK-MNGTVRSLAFADD-GKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCI 436 (564)
Q Consensus 370 ~~dg~I~lwd~~t~--------~~---~~~~~-~~~~V~~l~~spd-g~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~ 436 (564)
+.|+.|+|||+.++ +. +..+. |...|.+++|+|+ +.+|++++.||+|++||++++..+..... +..
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~-~~~ 193 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLP-STV 193 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEEC-GGG
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccC-CCC
Confidence 78999999998765 22 23333 7889999999997 88999999999999999998866554443 345
Q ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccc-------cccceeEEEEcCCCcEEEEEecCCCC---
Q 043172 437 NGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIEN-------LTTKVDFMKFNNDAQILAICSTMKKN--- 506 (564)
Q Consensus 437 ~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~-------~~~~I~~l~fspdg~~La~~s~~~d~--- 506 (564)
.+++++|+|+|++|++|+.||.|++||++ + .....+.. |...|.++.|++++.++++.+.. +|
T Consensus 194 ~v~~v~wspdg~~lasgs~dg~v~iwd~~-~-----~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~-dg~~~ 266 (434)
T 2oit_A 194 AVTSVCWSPKGKQLAVGKQNGTVVQYLPT-L-----QEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAA-DGTLE 266 (434)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEECTT-C-----CEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEET-TCCSS
T ss_pred ceeEEEEcCCCCEEEEEcCCCcEEEEccC-C-----cccccccCCcccCCCCceeEEEEEEecCceEEEEEccC-CCccC
Confidence 78999999999999999999999999998 3 33333332 23489999999999888765542 32
Q ss_pred ---eEEEEEcCCCc-----eeccCCCC----CCCCCCcEEEEEeCCCCEEEEEcC-CCeEEEEE
Q 043172 507 ---SLKLIHIPSYN-----VFSNWPPA----NRNLQYPRCLDFSPGGGFMAVGNA-AGKVFLYK 557 (564)
Q Consensus 507 ---~I~lwdl~s~~-----~~~~~~~~----~~~~~~V~~l~fspdg~~Lasgs~-dG~V~lw~ 557 (564)
.+++|++.... .+..+... .....+-..+.+-++.+++++++. .+.|.|..
T Consensus 267 ~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~ 330 (434)
T 2oit_A 267 TSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILA 330 (434)
T ss_dssp SCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEE
T ss_pred CCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEE
Confidence 49999997642 22222211 111222233444477777766653 34455544
No 160
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.85 E-value=1.6e-20 Score=210.19 Aligned_cols=286 Identities=11% Similarity=0.039 Sum_probs=193.6
Q ss_pred CeeEEEEcCCCCEEEEEeC---------CCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEE
Q 043172 264 PINSVQFHRNAQLLLVAGL---------DRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLD 334 (564)
Q Consensus 264 ~V~~l~fspdg~~l~s~s~---------dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwd 334 (564)
.|.+++|||||++|++++. ++.|++|++.++.......+ ...+..++|||||++|+++. ++.|++|+
T Consensus 61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~ 136 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQ 136 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEES
T ss_pred ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEe
Confidence 4899999999999999876 68999999986532000111 24688999999999999886 78999999
Q ss_pred CCCCceeeeccccccCC----------------cceEEEEEcCCCCEEEEEeCCC-------------------------
Q 043172 335 LVKAKADKIGPLVGREE----------------KSLEFFEVSPDSSVIAFVGNEG------------------------- 373 (564)
Q Consensus 335 l~~~~~~~~~~~~~~~~----------------~~v~~~~~spdg~~la~~~~dg------------------------- 373 (564)
+.++...++.. .++.. ....+++|||||++|++++.+.
T Consensus 137 ~~~g~~~~l~~-~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp 215 (719)
T 1z68_A 137 RPGDPPFQITF-NGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYP 215 (719)
T ss_dssp STTSCCEECCC-CCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECC
T ss_pred CCCCCcEEEec-CCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCC
Confidence 99887654321 22211 0124799999999999987542
Q ss_pred ---------eEEEEECCCCcEE---EE-----e-eecCcEEEEEEecCCCEEEEEeCC----CeEEEEE----CCCCcee
Q 043172 374 ---------YILLVSSKTKELI---GT-----L-KMNGTVRSLAFADDGKQLLSSGGD----GQVYHWD----LRTRTCI 427 (564)
Q Consensus 374 ---------~I~lwd~~t~~~~---~~-----~-~~~~~V~~l~~spdg~~l~s~s~d----g~V~lwD----~~~~~~~ 427 (564)
.|++||+.+++.. .. + .+...+.+++|+||++++++.... ..|++|| +.++++.
T Consensus 216 ~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~ 295 (719)
T 1z68_A 216 KAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCP 295 (719)
T ss_dssp BTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECC
T ss_pred CCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceE
Confidence 7899999988752 21 1 155678999999998777664322 3599999 8777655
Q ss_pred EEEe---ecCCcceE-----EEEECCCCCEEEE--EeCCC--cEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCc
Q 043172 428 HRAV---DEGCINGT-----ALCTSPDGTFFAA--GSDSG--IVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQ 495 (564)
Q Consensus 428 ~~~~---~~~~~~i~-----~l~~sp~g~~las--gs~dg--~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~ 495 (564)
..+. ..+...+. .++|+|+|+.|+. ...+| .|.+|++... . ...+..+...+..+.++ +++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~-----~-~~~lt~~~~~v~~~~~~-d~~ 368 (719)
T 1z68_A 296 KTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVE-----N-AIQITSGKWEAINIFRV-TQD 368 (719)
T ss_dssp GGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCST-----T-CEECSCSSSCEEEEEEE-CSS
T ss_pred EEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCC-----c-eEecccCceEEEEEEEE-eCC
Confidence 4332 22222333 7889999996554 44555 4666676653 2 44555556667888888 888
Q ss_pred EEEEEecC---CCCeEEEEEcCC--Cc-eeccCCC-CCCCCCCcEEEEEeCCCCEEEEE-cCC--CeEEEEEcCCC
Q 043172 496 ILAICSTM---KKNSLKLIHIPS--YN-VFSNWPP-ANRNLQYPRCLDFSPGGGFMAVG-NAA--GKVFLYKLNHY 561 (564)
Q Consensus 496 ~La~~s~~---~d~~I~lwdl~s--~~-~~~~~~~-~~~~~~~V~~l~fspdg~~Lasg-s~d--G~V~lw~l~~~ 561 (564)
.|++.+.. .++.++||.+.. +. ....+.. ...+...+..+.|+|+|++|+.. +.. ..+.+|++.+.
T Consensus 369 ~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g 444 (719)
T 1z68_A 369 SLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTD 444 (719)
T ss_dssp EEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSC
T ss_pred EEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCC
Confidence 88877752 137788888764 31 1122221 11233567889999999987743 333 46788887654
No 161
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.85 E-value=2.9e-20 Score=203.05 Aligned_cols=231 Identities=13% Similarity=0.053 Sum_probs=171.5
Q ss_pred CcCeEEEEEeeCCCEEEEEeC-CCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeC---CCeEEE--EE
Q 043172 306 DCPVRKASFLPDGSQAIIAGR-RKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGN---EGYILL--VS 379 (564)
Q Consensus 306 ~~~I~~l~fspdg~~l~s~~~-dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~---dg~I~l--wd 379 (564)
..+|++++|+|||++|++++. ++.+.||++.++...+ +..+....+..++|+|+ +++++++. +....+ ++
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~---lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~ 96 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK---LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVN 96 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE---CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe---eecccccccccccCCCC-eEEEEeccCCCCcceEEEEEe
Confidence 458999999999999999886 9999999997776544 33444346889999999 77777664 343444 55
Q ss_pred C--CCCcEEEEeeecCcEEEEEEecCCCE-EEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCC
Q 043172 380 S--KTKELIGTLKMNGTVRSLAFADDGKQ-LLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDS 456 (564)
Q Consensus 380 ~--~t~~~~~~~~~~~~V~~l~~spdg~~-l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~d 456 (564)
+ ..... .+.....+...+|+|+|+. +++.+.++.+.+||+.++++........ .+++|||+|++||+++.+
T Consensus 97 ~~~~g~~~--~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~----~~~~~spDG~~la~~~~~ 170 (582)
T 3o4h_A 97 TSRPGEEQ--RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG----FGFVSDIRGDLIAGLGFF 170 (582)
T ss_dssp TTSTTCCE--ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS----CEEEEEEETTEEEEEEEE
T ss_pred ccCCCccc--cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC----ceEEECCCCCEEEEEEEc
Confidence 5 33322 3433334557789998863 3444445556699999887655443322 688999999999988776
Q ss_pred ----CcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCC--eEEEEEcCCCceeccCCCCCCCCC
Q 043172 457 ----GIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKN--SLKLIHIPSYNVFSNWPPANRNLQ 530 (564)
Q Consensus 457 ----g~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~--~I~lwdl~s~~~~~~~~~~~~~~~ 530 (564)
+.|++||+.++ .+..+..+...+..++|||||++|+++.. ++ .|++|++.++... .+. .+..
T Consensus 171 ~~~~~~i~~~d~~~g------~~~~l~~~~~~~~~~~~SpDG~~l~~~~~--~~~~~i~~~d~~~~~~~-~~~---~~~~ 238 (582)
T 3o4h_A 171 GGGRVSLFTSNLSSG------GLRVFDSGEGSFSSASISPGMKVTAGLET--AREARLVTVDPRDGSVE-DLE---LPSK 238 (582)
T ss_dssp ETTEEEEEEEETTTC------CCEEECCSSCEEEEEEECTTSCEEEEEEC--SSCEEEEEECTTTCCEE-ECC---CSCS
T ss_pred CCCCeEEEEEcCCCC------CceEeecCCCccccceECCCCCEEEEccC--CCeeEEEEEcCCCCcEE-Ecc---CCCc
Confidence 78999998875 33466778888999999999999996666 66 8999999988766 332 2334
Q ss_pred CcEEEE--------EeCCCCEEEEEcCCCeEEEEEc
Q 043172 531 YPRCLD--------FSPGGGFMAVGNAAGKVFLYKL 558 (564)
Q Consensus 531 ~V~~l~--------fspdg~~Lasgs~dG~V~lw~l 558 (564)
.+.+++ |||||.++++++.+|.++||++
T Consensus 239 ~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 239 DFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp HHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred ChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 455556 9999988899999999999997
No 162
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.84 E-value=1.9e-19 Score=182.17 Aligned_cols=246 Identities=13% Similarity=0.057 Sum_probs=168.9
Q ss_pred CeeEEEEcCCCCEEE-EEeCCCcEEEEEecCCCCceeEEEEeCC------cCeEEEEEeeCCCEEEEEeCC---------
Q 043172 264 PINSVQFHRNAQLLL-VAGLDRRLRFFQIDGKRNTKIQSIFLED------CPVRKASFLPDGSQAIIAGRR--------- 327 (564)
Q Consensus 264 ~V~~l~fspdg~~l~-s~s~dg~I~lwd~~~~~~~~~~~~~~~~------~~I~~l~fspdg~~l~s~~~d--------- 327 (564)
.+.+++|+|++++++ +++.++.|.+|++.+ ...+..+..+. ..+..++|+|+|++|++++.+
T Consensus 44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t--~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~ 121 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT--CKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYV 121 (349)
T ss_dssp SSCEEEECTTSSEEEEEETTTTEEEEEETTT--TEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred CCceeEECCCCCEEEEEeCCCCcEEEEeCCC--CcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccc
Confidence 578999999998665 445689999999874 34555554332 237889999999999998865
Q ss_pred ---CeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeeecC-----------
Q 043172 328 ---KFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLKMNG----------- 393 (564)
Q Consensus 328 ---g~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~~~~----------- 393 (564)
+.|++||+.+++.........+.. .+.+++|+|+|+ +++++. .|.+||+.+++.+..+....
T Consensus 122 ~~~~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (349)
T 1jmx_B 122 VKPPRLEVFSTADGLEAKPVRTFPMPR-QVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDV 197 (349)
T ss_dssp ECCCEEEEEEGGGGGGBCCSEEEECCS-SCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBC
T ss_pred cCCCeEEEEECCCccccceeeeccCCC-cccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccc
Confidence 899999998865433222222222 477899999999 555543 49999999999887765322
Q ss_pred --------------cEEEEEEecCCCEEEEEeC-CCeEEEEECCCCceeEEEeecCCcceEEEEECC-CCCEEEEEeCCC
Q 043172 394 --------------TVRSLAFADDGKQLLSSGG-DGQVYHWDLRTRTCIHRAVDEGCINGTALCTSP-DGTFFAAGSDSG 457 (564)
Q Consensus 394 --------------~V~~l~~spdg~~l~s~s~-dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp-~g~~lasgs~dg 457 (564)
...++++++++........ ...+..++..+++....-.......+..++|+| ++++++++ ++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~ 275 (349)
T 1jmx_B 198 LYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LN 275 (349)
T ss_dssp CCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ES
T ss_pred eeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cC
Confidence 3455677665432211111 112233566555432221122334578899999 99999888 88
Q ss_pred cEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCC
Q 043172 458 IVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPA 525 (564)
Q Consensus 458 ~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~ 525 (564)
.|.+||+.++ +.+..+.. ...+.+++|+|+|++|++++. ++.|++|++.+++.+..++..
T Consensus 276 ~v~~~d~~~~-----~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~--~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 276 RLAKYDLKQR-----KLIKAANL-DHTYYCVAFDKKGDKLYLGGT--FNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp EEEEEETTTT-----EEEEEEEC-SSCCCEEEECSSSSCEEEESB--SSEEEEEETTTTEEEEEEECS
T ss_pred eEEEEECccC-----eEEEEEcC-CCCccceEECCCCCEEEEecC--CCeEEEEeccccceeeeeecC
Confidence 9999999886 66666653 345789999999999988766 799999999998887766544
No 163
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.84 E-value=8.3e-19 Score=180.08 Aligned_cols=251 Identities=12% Similarity=0.089 Sum_probs=172.3
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCCcEEEEEec-CCCCceeEEEEeCCcCeEEEEEeeCCCE--EEEEe------------
Q 043172 261 STGPINSVQFHRNAQLLLVAGLDRRLRFFQID-GKRNTKIQSIFLEDCPVRKASFLPDGSQ--AIIAG------------ 325 (564)
Q Consensus 261 h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~-~~~~~~~~~~~~~~~~I~~l~fspdg~~--l~s~~------------ 325 (564)
+...+..++|+|+|++|++++.+ .|.+|++. .+....+.....+ +.+.+++|+|+|++ ++++.
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~ 115 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFY 115 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceee
Confidence 33468899999999999999888 99999996 3321111122212 23566899999995 44442
Q ss_pred -CCCeEEEEECC-CCceeeeccccc-cCCcceEEEEEcCCCCEEEEEeC-CCeEEEEECC-CCcEE--EEee---ecCcE
Q 043172 326 -RRKFFYSLDLV-KAKADKIGPLVG-REEKSLEFFEVSPDSSVIAFVGN-EGYILLVSSK-TKELI--GTLK---MNGTV 395 (564)
Q Consensus 326 -~dg~i~iwdl~-~~~~~~~~~~~~-~~~~~v~~~~~spdg~~la~~~~-dg~I~lwd~~-t~~~~--~~~~---~~~~V 395 (564)
.++.+.+|++. .++......... .....+.+++|+|+|++|+++.. ++.|.+|++. +++.. ..+. +...+
T Consensus 116 ~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p 195 (365)
T 1jof_A 116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHP 195 (365)
T ss_dssp SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCE
T ss_pred cCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCC
Confidence 68899999997 455432222111 12236889999999998887764 5799999998 77653 2333 24579
Q ss_pred EEEEEecCCCEEEEEeC-CCeEEEEECC--CCceeE---EEee--cC--C-c-------ceEEEE-ECCCCCEEEEEeCC
Q 043172 396 RSLAFADDGKQLLSSGG-DGQVYHWDLR--TRTCIH---RAVD--EG--C-I-------NGTALC-TSPDGTFFAAGSDS 456 (564)
Q Consensus 396 ~~l~~spdg~~l~s~s~-dg~V~lwD~~--~~~~~~---~~~~--~~--~-~-------~i~~l~-~sp~g~~lasgs~d 456 (564)
..++|+|+|++|++++. ++.|.+|++. +++... .+.. .+ . . .+..++ |+|+|++|++++..
T Consensus 196 ~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~ 275 (365)
T 1jof_A 196 RWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA 275 (365)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred CEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCC
Confidence 99999999999988775 6899999875 455432 2221 11 1 1 467899 99999988876543
Q ss_pred -C-----cEEEEeCCcccCCcceeeE-EccccccceeEEEEcC---CCcEEEEEecCCCCeEEEEEcCCC
Q 043172 457 -G-----IVNVYNRQEFLGGKRKPIK-TIENLTTKVDFMKFNN---DAQILAICSTMKKNSLKLIHIPSY 516 (564)
Q Consensus 457 -g-----~V~iwd~~~~~~~~~~~~~-~~~~~~~~I~~l~fsp---dg~~La~~s~~~d~~I~lwdl~s~ 516 (564)
. .|.+|++... +....+. .+..+...+..++|+| +|++|++++.. ++.|.+|++...
T Consensus 276 ~~~~~~~~i~v~~~~~~--g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~-~~~v~v~~~~~~ 342 (365)
T 1jof_A 276 NKFELQGYIAGFKLRDC--GSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQ-EGWLEIYRWKDE 342 (365)
T ss_dssp SSTTSCCEEEEEEECTT--SCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSS-SCEEEEEEEETT
T ss_pred CCCCCCCeEEEEEECCC--CCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcC-CCeEEEEEEchh
Confidence 2 8999998631 1112211 2333445677899999 89999998763 589999998765
No 164
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.83 E-value=1e-19 Score=187.61 Aligned_cols=282 Identities=11% Similarity=0.049 Sum_probs=188.0
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCC-C--cEEEEEecCCCCceeEEEEeCCcC-eEEEEEeeCCCEEEEEeCCCeEEEEECC
Q 043172 261 STGPINSVQFHRNAQLLLVAGLD-R--RLRFFQIDGKRNTKIQSIFLEDCP-VRKASFLPDGSQAIIAGRRKFFYSLDLV 336 (564)
Q Consensus 261 h~~~V~~l~fspdg~~l~s~s~d-g--~I~lwd~~~~~~~~~~~~~~~~~~-I~~l~fspdg~~l~s~~~dg~i~iwdl~ 336 (564)
|...+.+++|+|+|++|+.+... + .|.+|++.+.. . ..+..+... ...+.|+|+|++|++++.++.|++|++.
T Consensus 34 ~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~--~-~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~ 110 (396)
T 3c5m_A 34 HRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQ--A-VQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLE 110 (396)
T ss_dssp ECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTE--E-EECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETT
T ss_pred cceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCc--E-EEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECC
Confidence 34457889999999998877543 3 57777776432 2 223323333 3347899999999999999999999999
Q ss_pred CCceeeeccccccCCcceEE-------------------EEEcCCCCEEEEE-----eCCCeEEEEECCCCcEEEEeeec
Q 043172 337 KAKADKIGPLVGREEKSLEF-------------------FEVSPDSSVIAFV-----GNEGYILLVSSKTKELIGTLKMN 392 (564)
Q Consensus 337 ~~~~~~~~~~~~~~~~~v~~-------------------~~~spdg~~la~~-----~~dg~I~lwd~~t~~~~~~~~~~ 392 (564)
+++...+...... .... +.|+|+++.++++ ..+..|++||+.+++......+.
T Consensus 111 ~~~~~~~~~~~~~---~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~ 187 (396)
T 3c5m_A 111 TLEEQVIYTVDEE---WKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDT 187 (396)
T ss_dssp TCCEEEEEECCTT---EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEES
T ss_pred CCCcEEEEecccc---cCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCC
Confidence 9876554332211 1111 3467788776654 35678999999998877666677
Q ss_pred CcEEEEEEec-CCCEEEEEeCC------CeEEEEECCCCceeEEEeecC-CcceEEEEECCCCCEEEEEeCC-----CcE
Q 043172 393 GTVRSLAFAD-DGKQLLSSGGD------GQVYHWDLRTRTCIHRAVDEG-CINGTALCTSPDGTFFAAGSDS-----GIV 459 (564)
Q Consensus 393 ~~V~~l~~sp-dg~~l~s~s~d------g~V~lwD~~~~~~~~~~~~~~-~~~i~~l~~sp~g~~lasgs~d-----g~V 459 (564)
..+..+.|+| ++..|+.++.+ ..|++||+..+... .+.... ...+..++|+|+|++|+.++.+ +.|
T Consensus 188 ~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l 266 (396)
T 3c5m_A 188 AWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVI 266 (396)
T ss_dssp SCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEE
T ss_pred cccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCCCCEEEEEecCCCCccceE
Confidence 8899999999 78877766543 46999998765533 333222 3357789999999988777543 449
Q ss_pred EEEeCCcccCCcceeeEEccccccceeEEEEcC-CCcEEEEEec--------------CCCCeEEEEEcCCCceeccCCC
Q 043172 460 NVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNN-DAQILAICST--------------MKKNSLKLIHIPSYNVFSNWPP 524 (564)
Q Consensus 460 ~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fsp-dg~~La~~s~--------------~~d~~I~lwdl~s~~~~~~~~~ 524 (564)
.+||+.++ ....+..+.. .. +.|+| +|++|++++. ..+..|++|++.++.... +..
T Consensus 267 ~~~d~~~g---~~~~l~~~~~----~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-l~~ 337 (396)
T 3c5m_A 267 YKANPETL---ENEEVMVMPP----CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQK-LCK 337 (396)
T ss_dssp EEECTTTC---CEEEEEECCS----EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCE-EEE
T ss_pred EEEECCCC---CeEEeeeCCC----CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEE-ccC
Confidence 99999764 1122222221 23 89999 9998887652 124789999998776432 111
Q ss_pred CCCC--------CCCcEEEEEeCCCCEEEEEcC-CCeEEEEEc
Q 043172 525 ANRN--------LQYPRCLDFSPGGGFMAVGNA-AGKVFLYKL 558 (564)
Q Consensus 525 ~~~~--------~~~V~~l~fspdg~~Lasgs~-dG~V~lw~l 558 (564)
.... ...+..++|+|+|++|+.++. +|...||.+
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 338 HSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp CCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred CCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence 1110 002566799999998887664 566556554
No 165
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.82 E-value=1.5e-18 Score=195.06 Aligned_cols=282 Identities=12% Similarity=0.056 Sum_probs=186.9
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcC-----eEEEEEeeCCCEEEEEeCC---------C
Q 043172 263 GPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCP-----VRKASFLPDGSQAIIAGRR---------K 328 (564)
Q Consensus 263 ~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~-----I~~l~fspdg~~l~s~~~d---------g 328 (564)
....+++|+|+|++|+++ |++|++|++.++. ....+..|... ...++|||||++|++++.+ +
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~ 92 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGN--SSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA 92 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCC--EEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCc--eEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence 346689999999999886 9999999998554 44445555432 2347899999999998765 5
Q ss_pred eEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee--ecCcE-----------
Q 043172 329 FFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK--MNGTV----------- 395 (564)
Q Consensus 329 ~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~--~~~~V----------- 395 (564)
.+++||+.+++... +..+.. .+...+|||||+.||++. ++.|++|++.+++..+... +...+
T Consensus 93 ~~~~~d~~~~~~~~---l~~~~~-~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~e 167 (740)
T 4a5s_A 93 SYDIYDLNKRQLIT---EERIPN-NTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEE 167 (740)
T ss_dssp EEEEEETTTTEECC---SSCCCT-TEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHH
T ss_pred EEEEEECCCCcEEE---cccCCC-cceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccc
Confidence 67899999998654 334333 689999999999999984 6899999999887654322 22222
Q ss_pred ------EEEEEecCCCEEEEEeCC------------------------------------CeEEEEECCC---Cc--eeE
Q 043172 396 ------RSLAFADDGKQLLSSGGD------------------------------------GQVYHWDLRT---RT--CIH 428 (564)
Q Consensus 396 ------~~l~~spdg~~l~s~s~d------------------------------------g~V~lwD~~~---~~--~~~ 428 (564)
..+.|+|||+.|+.++.| ..|++||+.+ +. ...
T Consensus 168 e~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~ 247 (740)
T 4a5s_A 168 EVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSI 247 (740)
T ss_dssp HTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEE
T ss_pred hhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEE
Confidence 358999999999987522 1588999988 73 222
Q ss_pred EEee-----cCCcceEEEEECCCCCEEEEEeC----CCcEEEEeCCcccCC-cceeeEEc--ccccccee-----EEEEc
Q 043172 429 RAVD-----EGCINGTALCTSPDGTFFAAGSD----SGIVNVYNRQEFLGG-KRKPIKTI--ENLTTKVD-----FMKFN 491 (564)
Q Consensus 429 ~~~~-----~~~~~i~~l~~sp~g~~lasgs~----dg~V~iwd~~~~~~~-~~~~~~~~--~~~~~~I~-----~l~fs 491 (564)
.+.. .+...+..++|+|+|++++.... +..|.+||+.++... ....+..+ ..+..+|. .++|+
T Consensus 248 ~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fs 327 (740)
T 4a5s_A 248 QITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFT 327 (740)
T ss_dssp EECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEEC
T ss_pred EecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEc
Confidence 3332 14446789999999997666543 347999999875100 00112222 34555554 78999
Q ss_pred CCCcEEE-EEecC-CCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEE-EEcC----CCeEEEEEc
Q 043172 492 NDAQILA-ICSTM-KKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMA-VGNA----AGKVFLYKL 558 (564)
Q Consensus 492 pdg~~La-~~s~~-~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~La-sgs~----dG~V~lw~l 558 (564)
|||+.|+ ..+.. ....|++|++.++..... .. + ...|..+. +++++.|+ +++. .+...||.+
T Consensus 328 pDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~l-T~--g-~~~v~~~~-~~d~~~i~f~~~~~~~~~~~~~ly~v 396 (740)
T 4a5s_A 328 LDGNSFYKIISNEEGYRHICYFQIDKKDCTFI-TK--G-TWEVIGIE-ALTSDYLYYISNEYKGMPGGRNLYKI 396 (740)
T ss_dssp TTSSEEEEEEECTTSCEEEEEEETTCSSCEES-CC--S-SSCEEEEE-EECSSEEEEEESCGGGCTTCBEEEEE
T ss_pred CCCCEEEEEEEcCCCceEEEEEECCCCceEec-cc--C-CEEEEEEE-EEeCCEEEEEEecCCCCCceeEEEEE
Confidence 9999887 66532 124688888877655432 11 1 23455543 24466555 4443 344566654
No 166
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.81 E-value=1.3e-17 Score=169.11 Aligned_cols=256 Identities=13% Similarity=0.159 Sum_probs=179.3
Q ss_pred CCeeEEEEcCCCCEEEEEe---------CCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCC---C--
Q 043172 263 GPINSVQFHRNAQLLLVAG---------LDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRR---K-- 328 (564)
Q Consensus 263 ~~V~~l~fspdg~~l~s~s---------~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~d---g-- 328 (564)
..+..++| +|+.++... .++.|.+|++.+... ..+ ..+..++|+|+|++|++++.+ +
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~---~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~ 85 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNAR---RFI----ENATMPRISPDGKKIAFMRANEEKKVS 85 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCE---EEE----ESCEEEEECTTSSEEEEEEEETTTTEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCce---EEc----ccCCCeEECCCCCEEEEEEeccCCCcc
Confidence 45777888 888877652 256788888876432 223 467899999999999988743 2
Q ss_pred eEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCC---------------------------CeEEEEECC
Q 043172 329 FFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNE---------------------------GYILLVSSK 381 (564)
Q Consensus 329 ~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d---------------------------g~I~lwd~~ 381 (564)
.|++|++.+++...+... . . +..++|+|+|+.|++++.+ ..|++|++.
T Consensus 86 ~l~~~~~~~g~~~~l~~~---~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~ 160 (347)
T 2gop_A 86 EIWVADLETLSSKKILEA---K-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTE 160 (347)
T ss_dssp EEEEEETTTTEEEEEEEE---S-E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETT
T ss_pred eEEEEECCCCceEEEEcC---C-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECC
Confidence 488889988876554322 2 2 8899999999999888642 579999999
Q ss_pred CCcEEEEeeecCcEEEEEEecCCCEEEEEeCC---------CeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEE
Q 043172 382 TKELIGTLKMNGTVRSLAFADDGKQLLSSGGD---------GQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAA 452 (564)
Q Consensus 382 t~~~~~~~~~~~~V~~l~~spdg~~l~s~s~d---------g~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~las 452 (564)
+++.+..+... .+..++|+|+| ++++++.+ ..|+++| +++. ..+..+ ..+..+ +|+|++|+.
T Consensus 161 ~~~~~~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~-~~l~~~--~~~~~~--spdg~~l~~ 231 (347)
T 2gop_A 161 SEEVIEEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKE-EKMFEK--VSFYAV--DSDGERILL 231 (347)
T ss_dssp TTEEEEEEEEE-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEE-EEEEEE--ESEEEE--EECSSCEEE
T ss_pred CCeEEeeecCC-CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCce-EEeccC--cceeeE--CCCCCEEEE
Confidence 98874444444 78899999999 77777553 2466666 4543 333333 334443 899998888
Q ss_pred EeCC--------CcEEEEeCCcccCCcceeeEEccccccceeE-EEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCC
Q 043172 453 GSDS--------GIVNVYNRQEFLGGKRKPIKTIENLTTKVDF-MKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWP 523 (564)
Q Consensus 453 gs~d--------g~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~-l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~ 523 (564)
++.+ ..|.+|| .+ ........+...+.. +.|+ ++ ++++++. ++.++|| +.++......+
T Consensus 232 ~~~~~~~~~~~~~~l~~~d--~~-----~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~--~~~~~l~-~~~g~~~~~~~ 299 (347)
T 2gop_A 232 YGKPEKKYMSEHNKLYIYD--GK-----EVMGILDEVDRGVGQAKIKD-GK-VYFTLFE--EGSVNLY-IWDGEIKPIAK 299 (347)
T ss_dssp EECCSSSCCCSSCEEEEEC--SS-----CEEESSTTCCSEEEEEEEET-TE-EEEEEEE--TTEEEEE-EESSSEEEEEC
T ss_pred EEccccCCccccceEEEEC--CC-----ceEeccccCCcccCCccEEc-Cc-EEEEEec--CCcEEEE-EcCCceEEEec
Confidence 7754 3688888 33 333334455677886 9999 88 8888887 8899999 87655433222
Q ss_pred CCCCCCCCcEEEEEeCCCCEEEEEcCCCeE-EEEEcC
Q 043172 524 PANRNLQYPRCLDFSPGGGFMAVGNAAGKV-FLYKLN 559 (564)
Q Consensus 524 ~~~~~~~~V~~l~fspdg~~Lasgs~dG~V-~lw~l~ 559 (564)
+.+.|.+++|+| .++++++.++.. .||.+.
T Consensus 300 ----~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 300 ----GRHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp ----SSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred ----CCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 236789999999 677777777664 777653
No 167
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.80 E-value=2.4e-18 Score=193.41 Aligned_cols=245 Identities=11% Similarity=0.077 Sum_probs=168.5
Q ss_pred CeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCC--c--ceEEEEEcCCCCEEEEEeCC---------Ce
Q 043172 308 PVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREE--K--SLEFFEVSPDSSVIAFVGNE---------GY 374 (564)
Q Consensus 308 ~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~--~--~v~~~~~spdg~~la~~~~d---------g~ 374 (564)
...++.|+|+|.+|+++ ++.|++||+.+++...+ +.++.. . ....+.|||||++|++++.+ +.
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~ 93 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVF--LENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS 93 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEE--ECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEE--EechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence 35688999999888875 89999999999987554 333321 1 22448999999999998875 66
Q ss_pred EEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcce----------------
Q 043172 375 ILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCING---------------- 438 (564)
Q Consensus 375 I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i---------------- 438 (564)
+.+||+.+++......+.+.+..++|||||+.|+.+. ++.|++|++.++.........+...+
T Consensus 94 ~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~ 172 (740)
T 4a5s_A 94 YDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSA 172 (740)
T ss_dssp EEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSS
T ss_pred EEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCC
Confidence 7899999998665444678899999999999999885 68999999988775432222211111
Q ss_pred -EEEEECCCCCEEEEEeCCC------------------------------------cEEEEeCCc---ccCCcceeeEEc
Q 043172 439 -TALCTSPDGTFFAAGSDSG------------------------------------IVNVYNRQE---FLGGKRKPIKTI 478 (564)
Q Consensus 439 -~~l~~sp~g~~lasgs~dg------------------------------------~V~iwd~~~---~~~~~~~~~~~~ 478 (564)
..+.|||||++||.++.|. .|.|||+.+ + ... ....+
T Consensus 173 ~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~--~~~-~~~~l 249 (740)
T 4a5s_A 173 YSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSV--TNA-TSIQI 249 (740)
T ss_dssp SBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSS--SCC-CEEEE
T ss_pred CcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCC--Ccc-eEEEe
Confidence 2489999999999876332 466777765 3 000 12222
Q ss_pred c------ccccceeEEEEcCCCcEEEEEecCC--CCeEEEEEcCCCc----eeccCCC-CCCCCCCc-----EEEEEeCC
Q 043172 479 E------NLTTKVDFMKFNNDAQILAICSTMK--KNSLKLIHIPSYN----VFSNWPP-ANRNLQYP-----RCLDFSPG 540 (564)
Q Consensus 479 ~------~~~~~I~~l~fspdg~~La~~s~~~--d~~I~lwdl~s~~----~~~~~~~-~~~~~~~V-----~~l~fspd 540 (564)
. ++...+..++|+|||++++...... +..|++|++.+++ +...... ...+.+.| ..++||||
T Consensus 250 ~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspD 329 (740)
T 4a5s_A 250 TAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLD 329 (740)
T ss_dssp CCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTT
T ss_pred cCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCC
Confidence 2 3677899999999999777655421 2379999998876 2221111 01222333 37889999
Q ss_pred CCEEE-EEc-CCC--eEEEEEcCC
Q 043172 541 GGFMA-VGN-AAG--KVFLYKLNH 560 (564)
Q Consensus 541 g~~La-sgs-~dG--~V~lw~l~~ 560 (564)
|+.|+ ..+ .+| .|++|++..
T Consensus 330 G~~l~~~~s~~~G~~~l~~~~~~~ 353 (740)
T 4a5s_A 330 GNSFYKIISNEEGYRHICYFQIDK 353 (740)
T ss_dssp SSEEEEEEECTTSCEEEEEEETTC
T ss_pred CCEEEEEEEcCCCceEEEEEECCC
Confidence 99877 554 444 577777654
No 168
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.80 E-value=2.1e-17 Score=183.00 Aligned_cols=288 Identities=10% Similarity=0.028 Sum_probs=190.4
Q ss_pred CCCCCCeeEEEEcCCCCEEEEE--eCCCcEEEEEecCCCCceeEEEEeCCcCeE---------EEEEe--eCCCE-EEEE
Q 043172 259 ESSTGPINSVQFHRNAQLLLVA--GLDRRLRFFQIDGKRNTKIQSIFLEDCPVR---------KASFL--PDGSQ-AIIA 324 (564)
Q Consensus 259 ~~h~~~V~~l~fspdg~~l~s~--s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~---------~l~fs--pdg~~-l~s~ 324 (564)
.+|...|.+++|++++-++++. +.++...||.... ......+..+...+. ...|+ |||++ |+++
T Consensus 20 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~ 97 (662)
T 3azo_A 20 ASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRA--DGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT 97 (662)
T ss_dssp HHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECT--TSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred hhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECC--CCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence 3488899999999887777776 5588899998632 223445555555555 56666 99998 7776
Q ss_pred eC-CCeEEEEECC--C-Cceeeecccccc-CCcceEEEEEcCCCCEEEEEeCC----------CeEEEEECCC------C
Q 043172 325 GR-RKFFYSLDLV--K-AKADKIGPLVGR-EEKSLEFFEVSPDSSVIAFVGNE----------GYILLVSSKT------K 383 (564)
Q Consensus 325 ~~-dg~i~iwdl~--~-~~~~~~~~~~~~-~~~~v~~~~~spdg~~la~~~~d----------g~I~lwd~~t------~ 383 (564)
+. +..|++|++. + +....+...... +...+..++|+|||+.|++++.+ ..|++|++.+ +
T Consensus 98 ~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 177 (662)
T 3azo_A 98 HFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRS 177 (662)
T ss_dssp BTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGG
T ss_pred ECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCC
Confidence 53 5678888876 3 554333221100 22357899999999999998876 5899999988 6
Q ss_pred cEEEEe-eecCcEEEEEEecCCCEEEEEeCC--------CeEEEEECC-CCc--eeEEEeecCCcceEEEEECCCCCEEE
Q 043172 384 ELIGTL-KMNGTVRSLAFADDGKQLLSSGGD--------GQVYHWDLR-TRT--CIHRAVDEGCINGTALCTSPDGTFFA 451 (564)
Q Consensus 384 ~~~~~~-~~~~~V~~l~~spdg~~l~s~s~d--------g~V~lwD~~-~~~--~~~~~~~~~~~~i~~l~~sp~g~~la 451 (564)
+..... .+...+..++|+|||++|+.++.+ ..|++||+. ++. ....+...+...+..++|+|+|++++
T Consensus 178 ~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~ 257 (662)
T 3azo_A 178 AVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIV 257 (662)
T ss_dssp GSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEE
T ss_pred ceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEE
Confidence 665554 456678889999999999987754 489999998 561 33344444344678999999999888
Q ss_pred EEeCCC--cEEEEeCCcccCCcceeeEEccccccc--------eeEEEEcCCCcEEEEEecCCCCeEEEE--EcCCCcee
Q 043172 452 AGSDSG--IVNVYNRQEFLGGKRKPIKTIENLTTK--------VDFMKFNNDAQILAICSTMKKNSLKLI--HIPSYNVF 519 (564)
Q Consensus 452 sgs~dg--~V~iwd~~~~~~~~~~~~~~~~~~~~~--------I~~l~fspdg~~La~~s~~~d~~I~lw--dl~s~~~~ 519 (564)
+++.+| .|.+|++..+ +.......+... +.+++|+|+++++++++. +.++|| ++.++. .
T Consensus 258 ~~~~~~~~~l~~~~~~~~-----~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~d~~~~~-~ 328 (662)
T 3azo_A 258 ATDRTGWWNLHRVDPATG-----AATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK---GAAVLGILDPESGE-L 328 (662)
T ss_dssp EECTTSSCEEEEECTTTC-----CEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS---SSCEEEEEETTTTE-E
T ss_pred EECCCCCeEEEEEECCCC-----ceeecccccccccCccccccCceEeEeCCCEEEEEEEc---CccEEEEEECCCCc-E
Confidence 888888 5666665443 222222222111 567899999998888775 556666 665555 3
Q ss_pred ccCCCCCCCCCCcEEE-EEeCCCCEEEEEcCCCe--EEEEEcCC
Q 043172 520 SNWPPANRNLQYPRCL-DFSPGGGFMAVGNAAGK--VFLYKLNH 560 (564)
Q Consensus 520 ~~~~~~~~~~~~V~~l-~fspdg~~Lasgs~dG~--V~lw~l~~ 560 (564)
..+.. +.+.+..+ +++++.-++++++.+.. |++|++.+
T Consensus 329 ~~l~~---~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~ 369 (662)
T 3azo_A 329 VDAAG---PWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVT 369 (662)
T ss_dssp EECCS---SCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTT
T ss_pred EEecC---CCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCC
Confidence 33322 33556666 44443334445555544 44455443
No 169
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.80 E-value=6.1e-18 Score=174.21 Aligned_cols=255 Identities=15% Similarity=0.121 Sum_probs=172.3
Q ss_pred CceeEEEEeCCcCeEE-----EEEeeCCCEEEEEeC-CC--eEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEE
Q 043172 296 NTKIQSIFLEDCPVRK-----ASFLPDGSQAIIAGR-RK--FFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIA 367 (564)
Q Consensus 296 ~~~~~~~~~~~~~I~~-----l~fspdg~~l~s~~~-dg--~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la 367 (564)
...+..+..+...... .+|+|||++|++++. ++ .|++||+.+++..++.. ++. ..+..+.|+|+|+.|+
T Consensus 20 g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~--~~~-~~~~~~~~spdg~~l~ 96 (388)
T 3pe7_A 20 GAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTE--GRG-DNTFGGFLSPDDDALF 96 (388)
T ss_dssp CCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCC--SSC-BCSSSCEECTTSSEEE
T ss_pred CcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeee--CCC-CCccceEEcCCCCEEE
Confidence 3455555555544444 789999999999886 56 59999999988765432 222 1233568999999999
Q ss_pred EEeCCCeEEEEECCCCcEEEEee-ecCcEEEEE--EecCCCEEEEEe----------------------CCCeEEEEECC
Q 043172 368 FVGNEGYILLVSSKTKELIGTLK-MNGTVRSLA--FADDGKQLLSSG----------------------GDGQVYHWDLR 422 (564)
Q Consensus 368 ~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~--~spdg~~l~s~s----------------------~dg~V~lwD~~ 422 (564)
+++.++.|++||+.+++....+. +...+.... ++|++++++... .++.|++||+.
T Consensus 97 ~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 176 (388)
T 3pe7_A 97 YVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLK 176 (388)
T ss_dssp EEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETT
T ss_pred EEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECC
Confidence 99999999999999998877666 344444343 488999887432 34789999999
Q ss_pred CCceeEEEeecCCcceEEEEECC-CCCEEEEEeCC------CcEEEEeCCcccCCcceeeEEccccc--cceeEEEEcCC
Q 043172 423 TRTCIHRAVDEGCINGTALCTSP-DGTFFAAGSDS------GIVNVYNRQEFLGGKRKPIKTIENLT--TKVDFMKFNND 493 (564)
Q Consensus 423 ~~~~~~~~~~~~~~~i~~l~~sp-~g~~lasgs~d------g~V~iwd~~~~~~~~~~~~~~~~~~~--~~I~~l~fspd 493 (564)
+++...... .. ..+..++|+| +|++|+..+.. ..|.+++.... ....+..+. ..+..++|+||
T Consensus 177 ~g~~~~l~~-~~-~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~------~~~~l~~~~~~~~~~~~~~spd 248 (388)
T 3pe7_A 177 TGESTVILQ-EN-QWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGT------NMRKVKTHAEGESCTHEFWVPD 248 (388)
T ss_dssp TCCEEEEEE-ES-SCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSC------CCEESCCCCTTEEEEEEEECTT
T ss_pred CCceEEeec-CC-ccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCC------ceEEeeeCCCCcccccceECCC
Confidence 887554433 22 3568899999 99988887753 37888887653 333444333 35788999999
Q ss_pred CcEEEEEecCCCC---eEEEEEcCCCceec--cCCCCCCCCCCcEEEEEeCCCCEEEEE---------cCCCeEEEEEcC
Q 043172 494 AQILAICSTMKKN---SLKLIHIPSYNVFS--NWPPANRNLQYPRCLDFSPGGGFMAVG---------NAAGKVFLYKLN 559 (564)
Q Consensus 494 g~~La~~s~~~d~---~I~lwdl~s~~~~~--~~~~~~~~~~~V~~l~fspdg~~Lasg---------s~dG~V~lw~l~ 559 (564)
|+.|+..+....+ .|++|++.+++... .++........+..++|+|+|++|+.. ..+..|++|++.
T Consensus 249 g~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~ 328 (388)
T 3pe7_A 249 GSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMK 328 (388)
T ss_dssp SSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETT
T ss_pred CCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEecc
Confidence 9988776543222 39999999886432 222100000001223799999988854 456689999987
Q ss_pred CC
Q 043172 560 HY 561 (564)
Q Consensus 560 ~~ 561 (564)
..
T Consensus 329 ~~ 330 (388)
T 3pe7_A 329 NG 330 (388)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 170
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.79 E-value=2.2e-17 Score=169.31 Aligned_cols=274 Identities=11% Similarity=0.075 Sum_probs=192.1
Q ss_pred CCCEEEEEe------CCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEe----------CCCeEEEEECC
Q 043172 273 NAQLLLVAG------LDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAG----------RRKFFYSLDLV 336 (564)
Q Consensus 273 dg~~l~s~s------~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~----------~dg~i~iwdl~ 336 (564)
++++++++. .|+.|.+||.. +...+..+..+..+ .++|+|+|++|+++. .++.|.+||+.
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~--t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~ 89 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYT--NGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDAD 89 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETT--TCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETT
T ss_pred CCCEEEEECCCCCccccCeEEEEECC--CCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECc
Confidence 455665553 36799999876 44466677766555 899999999999986 25679999999
Q ss_pred CCceeeecccccc---CCcceEEEEEcCCCCEEEEEeC--CCeEEEEECCCCcEEEE-eeecCcEEEEEEecCC-CEEEE
Q 043172 337 KAKADKIGPLVGR---EEKSLEFFEVSPDSSVIAFVGN--EGYILLVSSKTKELIGT-LKMNGTVRSLAFADDG-KQLLS 409 (564)
Q Consensus 337 ~~~~~~~~~~~~~---~~~~v~~~~~spdg~~la~~~~--dg~I~lwd~~t~~~~~~-~~~~~~V~~l~~spdg-~~l~s 409 (564)
+++......+... .......++|+|+|++|+++.. ++.|.+||+.+++.+.. +...+. ..+.+.|++ ..+++
T Consensus 90 t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~-~~v~~~p~~~~~~~~ 168 (361)
T 2oiz_A 90 KLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGC-WSVIPQPNRPRSFMT 168 (361)
T ss_dssp TCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTE-EEEEECTTSSSEEEE
T ss_pred CCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCc-ceeEEcCCCCeeEEE
Confidence 8876544332211 1123557999999999998874 58999999999998887 654332 335677865 67788
Q ss_pred EeCCCeEEEEECCC-CceeEEEe-----ecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEcccc--
Q 043172 410 SGGDGQVYHWDLRT-RTCIHRAV-----DEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENL-- 481 (564)
Q Consensus 410 ~s~dg~V~lwD~~~-~~~~~~~~-----~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~-- 481 (564)
.+.||.+.+|++.. ++...... ..+... ..+.+++++..++..+.++.|.++|+... ....+..+...
T Consensus 169 ~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~---~~~~~~~~~~~~~ 244 (361)
T 2oiz_A 169 ICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGD---EVKVDGPWSLLND 244 (361)
T ss_dssp EETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSS---SCEEEEEEESCCH
T ss_pred ECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCC---CceecccccccCc
Confidence 88999999999865 55442211 111111 12334567777777888999999998753 11222221100
Q ss_pred --------ccceeEEEEcCCCcEEEEEec-C--------CCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEE
Q 043172 482 --------TTKVDFMKFNNDAQILAICST-M--------KKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFM 544 (564)
Q Consensus 482 --------~~~I~~l~fspdg~~La~~s~-~--------~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~L 544 (564)
......++|+|++..++++.. . ..+.|.+||+.+++.+..++.. . +.+++|+|+|++|
T Consensus 245 ~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~----~-p~~ia~spdg~~l 319 (361)
T 2oiz_A 245 EDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGR----D-ALSMTIDQQRNLM 319 (361)
T ss_dssp HHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECT----T-CCEEEEETTTTEE
T ss_pred cccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecC----C-eeEEEECCCCCEE
Confidence 112223789999888877643 0 1358999999999999887665 3 8899999999999
Q ss_pred EEEcCCCeEEEEEcCCC
Q 043172 545 AVGNAAGKVFLYKLNHY 561 (564)
Q Consensus 545 asgs~dG~V~lw~l~~~ 561 (564)
++++. +.|.+||+.++
T Consensus 320 ~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 320 LTLDG-GNVNVYDISQP 335 (361)
T ss_dssp EEECS-SCEEEEECSSS
T ss_pred EEeCC-CeEEEEECCCC
Confidence 99987 99999999876
No 171
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.78 E-value=6.2e-17 Score=163.67 Aligned_cols=245 Identities=11% Similarity=0.122 Sum_probs=184.6
Q ss_pred CcCeEEEEEeeCCCEEEEEeCC------------------------CeEEEEECCCCceeeeccccccCCcceEEEEEcC
Q 043172 306 DCPVRKASFLPDGSQAIIAGRR------------------------KFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSP 361 (564)
Q Consensus 306 ~~~I~~l~fspdg~~l~s~~~d------------------------g~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~sp 361 (564)
-..+.+++++|+|+.+++...+ +.|++||..+++.... +..........++++|
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~--~~~~~~~~p~gia~d~ 100 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQS--SGKNLFYLPHGLSIDT 100 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEE--ECTTTCSSEEEEEECT
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEec--cCCCccCCceEEEECC
Confidence 3578999999999888877666 4799999998887542 2212223578999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCc-EEEEee----------ecCcEEEEEEec-CCCEEEEEe-CCCeEEEEECCCCceeE
Q 043172 362 DSSVIAFVGNEGYILLVSSKTKE-LIGTLK----------MNGTVRSLAFAD-DGKQLLSSG-GDGQVYHWDLRTRTCIH 428 (564)
Q Consensus 362 dg~~la~~~~dg~I~lwd~~t~~-~~~~~~----------~~~~V~~l~~sp-dg~~l~s~s-~dg~V~lwD~~~~~~~~ 428 (564)
+|+++++...++.|.+|+..... .+..+. +-..+.+++++| ++.++++.+ .++.|++|+ ..+..+.
T Consensus 101 ~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~ 179 (329)
T 3fvz_A 101 DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVT 179 (329)
T ss_dssp TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEE
T ss_pred CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEE
Confidence 99988888888999999986542 444442 223689999999 788777776 689999999 4577776
Q ss_pred EEeecCC---------cceEEEEECCC-CCEEEEEeCCCcEEEEeCCcccCCcceeeEEc--cccccceeEEEEcCCCcE
Q 043172 429 RAVDEGC---------INGTALCTSPD-GTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTI--ENLTTKVDFMKFNNDAQI 496 (564)
Q Consensus 429 ~~~~~~~---------~~i~~l~~sp~-g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~--~~~~~~I~~l~fspdg~~ 496 (564)
.+...+. .....++++|+ +.++++...++.|.+|+..++ +.+..+ ..+...+..++|+| +..
T Consensus 180 ~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G-----~~~~~~~~~~~~~~~~~~~~~p-g~~ 253 (329)
T 3fvz_A 180 QWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK-----EFVREIKHASFGRNVFAISYIP-GFL 253 (329)
T ss_dssp EECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC-----CEEEEECCTTTTTCEEEEEEET-TEE
T ss_pred EeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC-----cEEEEEeccccCCCcceeeecC-CEE
Confidence 6643221 13688999998 777788888999999999865 666666 34556788999999 433
Q ss_pred EEEEec-----CCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q 043172 497 LAICST-----MKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLN 559 (564)
Q Consensus 497 La~~s~-----~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~ 559 (564)
+++.+. ..+..|++|++.+++.+..+.....+...+.+|+|+|+|.++++...+++|++|++.
T Consensus 254 ~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 254 FAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp EEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred EEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence 333221 114589999999999888776555666789999999999888888889999999985
No 172
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.78 E-value=3e-17 Score=168.33 Aligned_cols=256 Identities=11% Similarity=0.033 Sum_probs=183.2
Q ss_pred EEEEcCCCCEEEEEeC----------CCcEEEEEecCCCCceeEEEEeC------CcCeEEEEEeeCCCEEEEEeC--CC
Q 043172 267 SVQFHRNAQLLLVAGL----------DRRLRFFQIDGKRNTKIQSIFLE------DCPVRKASFLPDGSQAIIAGR--RK 328 (564)
Q Consensus 267 ~l~fspdg~~l~s~s~----------dg~I~lwd~~~~~~~~~~~~~~~------~~~I~~l~fspdg~~l~s~~~--dg 328 (564)
.++|+|+|++|++++. +++|.+||+. +...+..+... ......++|+|+|++|+++.. ++
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~--t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~ 131 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDAD--KLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPAT 131 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETT--TCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECc--CCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCC
Confidence 8999999999999863 6779999876 44566666543 234678999999999999874 57
Q ss_pred eEEEEECCCCceeee-ccccccCCcceEEEEEcCCC-CEEEEEeCCCeEEEEECCC-CcEEEEee------ecCcEEEEE
Q 043172 329 FFYSLDLVKAKADKI-GPLVGREEKSLEFFEVSPDS-SVIAFVGNEGYILLVSSKT-KELIGTLK------MNGTVRSLA 399 (564)
Q Consensus 329 ~i~iwdl~~~~~~~~-~~~~~~~~~~v~~~~~spdg-~~la~~~~dg~I~lwd~~t-~~~~~~~~------~~~~V~~l~ 399 (564)
.|.+||+.+++.... .... ....+.+.|++ ..+++.+.+|.+.+|++.. ++...... .......+.
T Consensus 132 ~v~v~d~~~~~~~~~~i~~~-----~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 206 (361)
T 2oiz_A 132 SIGIVDVAKGDYVEDVTAAA-----GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIA 206 (361)
T ss_dssp EEEEEETTTTEEEEEEGGGT-----TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSC
T ss_pred eEEEEECCCCcEEEEEecCC-----CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEE
Confidence 999999999976543 2222 12335677765 5677788899999998865 55542211 111122344
Q ss_pred EecCCCEEEEEeCCCeEEEEECCCCce--eEEEeecC---------CcceEEEEECCCCCEEEEEeC-----------CC
Q 043172 400 FADDGKQLLSSGGDGQVYHWDLRTRTC--IHRAVDEG---------CINGTALCTSPDGTFFAAGSD-----------SG 457 (564)
Q Consensus 400 ~spdg~~l~s~s~dg~V~lwD~~~~~~--~~~~~~~~---------~~~i~~l~~sp~g~~lasgs~-----------dg 457 (564)
++|++..++..+.++.|+++|+..... +..+.... ......++++|+++.++++.. .+
T Consensus 207 ~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~ 286 (361)
T 2oiz_A 207 PALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAA 286 (361)
T ss_dssp CEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCS
T ss_pred ecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCc
Confidence 567888888888899999999975542 22221100 001123789999887776543 34
Q ss_pred cEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCC--ceeccCCCCCCCCCCcEEE
Q 043172 458 IVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSY--NVFSNWPPANRNLQYPRCL 535 (564)
Q Consensus 458 ~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~--~~~~~~~~~~~~~~~V~~l 535 (564)
.|.+||+.+. +.+.++..+. +.+|+|+|||++|++++. +.|.+||+.++ +++..+.... .....+
T Consensus 287 ~v~viD~~t~-----~~v~~i~~~~--p~~ia~spdg~~l~v~n~---~~v~v~D~~t~~l~~~~~i~~~G---~~P~~~ 353 (361)
T 2oiz_A 287 EIWVMDTKTK-----QRVARIPGRD--ALSMTIDQQRNLMLTLDG---GNVNVYDISQPEPKLLRTIEGAA---EASLQV 353 (361)
T ss_dssp EEEEEETTTT-----EEEEEEECTT--CCEEEEETTTTEEEEECS---SCEEEEECSSSSCEEEEEETTSC---SSEEEE
T ss_pred eEEEEECCCC-----cEEEEEecCC--eeEEEECCCCCEEEEeCC---CeEEEEECCCCcceeeEEeccCC---CCcEEE
Confidence 8999999987 8888888766 999999999999887763 89999999999 8887653221 457889
Q ss_pred EEeCCCC
Q 043172 536 DFSPGGG 542 (564)
Q Consensus 536 ~fspdg~ 542 (564)
+|+|+|+
T Consensus 354 ~~~p~G~ 360 (361)
T 2oiz_A 354 QFHPVGG 360 (361)
T ss_dssp EECCCSC
T ss_pred EecCCCC
Confidence 9999986
No 173
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.78 E-value=3.3e-16 Score=154.45 Aligned_cols=241 Identities=10% Similarity=0.077 Sum_probs=175.8
Q ss_pred cCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccc---cCCcceEEEEE-cCCCCEEEEEeC-CCeEEEEECC
Q 043172 307 CPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVG---REEKSLEFFEV-SPDSSVIAFVGN-EGYILLVSSK 381 (564)
Q Consensus 307 ~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~---~~~~~v~~~~~-spdg~~la~~~~-dg~I~lwd~~ 381 (564)
..+.+++++++|+.+++...++.|.+|+.... ........+ .+...+..+++ .+++.++++... ++.|.+|+ .
T Consensus 30 ~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~-~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~ 107 (286)
T 1q7f_A 30 TEPSGVAVNAQNDIIVADTNNHRIQIFDKEGR-FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-Q 107 (286)
T ss_dssp SCEEEEEECTTCCEEEEEGGGTEEEEECTTSC-EEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-T
T ss_pred CCCceEEECCCCCEEEEECCCCEEEEECCCCc-EEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-C
Confidence 46789999999988777778899999998743 322221111 11135788999 467766666543 78999999 6
Q ss_pred CCcEEEEee--ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEee-cCCcceEEEEECCCCCEEEEEeCCCc
Q 043172 382 TKELIGTLK--MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVD-EGCINGTALCTSPDGTFFAAGSDSGI 458 (564)
Q Consensus 382 t~~~~~~~~--~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~-~~~~~i~~l~~sp~g~~lasgs~dg~ 458 (564)
+++.+..+. +...+.+++++|+|+++++...++.|++||.. ++.+..+.. .+...+..++++|+|+++++.+.++.
T Consensus 108 ~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~ 186 (286)
T 1q7f_A 108 YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHC 186 (286)
T ss_dssp TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTE
T ss_pred CCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCE
Confidence 677776665 33578999999999977777778999999965 555555543 22335789999999998888888999
Q ss_pred EEEEeCCcccCCcceeeEEcccc--ccceeEEEEcCCCcEEEEEecCCCC-eEEEEEcCCCceeccCCCCCCCCCCcEEE
Q 043172 459 VNVYNRQEFLGGKRKPIKTIENL--TTKVDFMKFNNDAQILAICSTMKKN-SLKLIHIPSYNVFSNWPPANRNLQYPRCL 535 (564)
Q Consensus 459 V~iwd~~~~~~~~~~~~~~~~~~--~~~I~~l~fspdg~~La~~s~~~d~-~I~lwdl~s~~~~~~~~~~~~~~~~V~~l 535 (564)
|.+|+... ..+..+... ...+..|+++++|+++++... ++ .|.+|+. +++.+..+.... ....+.++
T Consensus 187 i~~~~~~g------~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~--~~~~i~~~~~-~g~~~~~~~~~~-~~~~~~~i 256 (286)
T 1q7f_A 187 VKVFNYEG------QYLRQIGGEGITNYPIGVGINSNGEILIADNH--NNFNLTIFTQ-DGQLISALESKV-KHAQCFDV 256 (286)
T ss_dssp EEEEETTC------CEEEEESCTTTSCSEEEEEECTTCCEEEEECS--SSCEEEEECT-TSCEEEEEEESS-CCSCEEEE
T ss_pred EEEEcCCC------CEEEEEccCCccCCCcEEEECCCCCEEEEeCC--CCEEEEEECC-CCCEEEEEcccC-CCCcceeE
Confidence 99999754 445555432 357889999999988877766 55 9999995 455555443322 22357899
Q ss_pred EEeCCCCEEEEEcCCCeEEEEEcCCC
Q 043172 536 DFSPGGGFMAVGNAAGKVFLYKLNHY 561 (564)
Q Consensus 536 ~fspdg~~Lasgs~dG~V~lw~l~~~ 561 (564)
+|+|+|+++++ +.+++|++|++...
T Consensus 257 ~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 257 ALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred EECCCCcEEEE-CCCCeEEEEEcccc
Confidence 99999987766 57899999998653
No 174
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.77 E-value=1.3e-16 Score=161.03 Aligned_cols=274 Identities=8% Similarity=0.055 Sum_probs=192.8
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCcee
Q 043172 262 TGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKAD 341 (564)
Q Consensus 262 ~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~ 341 (564)
...|.+++|+|++..++..+.++.+++|. ......+..+...+.+++|+|+|+.++++..++.|++||..+++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~ 79 (333)
T 2dg1_A 5 QQDLPTLFYSGKSNSAVPIISESELQTIT-----AEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIK 79 (333)
T ss_dssp -CCCCBCCSCGGGGCSSCCCCGGGSCEEE-----CEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE
T ss_pred ccccceeeecCCccceeEEeecccCcccc-----cceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEE
Confidence 34688899999988887777888999992 2245556666677899999999997777778899999999988765
Q ss_pred eeccccccCCcceEEEEEcCCCCEEEEEeCC----CeEEEEECCCCcEEEEee---ecCcEEEEEEecCCCEEEEEeC--
Q 043172 342 KIGPLVGREEKSLEFFEVSPDSSVIAFVGNE----GYILLVSSKTKELIGTLK---MNGTVRSLAFADDGKQLLSSGG-- 412 (564)
Q Consensus 342 ~~~~~~~~~~~~v~~~~~spdg~~la~~~~d----g~I~lwd~~t~~~~~~~~---~~~~V~~l~~spdg~~l~s~s~-- 412 (564)
.+.. .+ ...+.+++++|+|+++++...+ +.|.+||..++.....+. ....+.+++++|+|+++++...
T Consensus 80 ~~~~--~~-~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~ 156 (333)
T 2dg1_A 80 RPFV--SH-KANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGY 156 (333)
T ss_dssp EEEE--CS-SSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCB
T ss_pred EEee--CC-CCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEecccc
Confidence 4321 12 2368999999999988777665 689999998887654433 3457899999999987776653
Q ss_pred ----CCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEE-EEeCCCcEEEEeCCcccCCccee-----eEEccccc
Q 043172 413 ----DGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFA-AGSDSGIVNVYNRQEFLGGKRKP-----IKTIENLT 482 (564)
Q Consensus 413 ----dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~la-sgs~dg~V~iwd~~~~~~~~~~~-----~~~~~~~~ 482 (564)
.+.|+.|+..+++...... . ...+..++|+|+|++|+ +.+.++.|.+|++.... ..... ...+.++
T Consensus 157 ~~~~~~~l~~~~~~~~~~~~~~~-~-~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g-~~~~~~~~~~~~~~~~~- 232 (333)
T 2dg1_A 157 STNPLGGVYYVSPDFRTVTPIIQ-N-ISVANGIALSTDEKVLWVTETTANRLHRIALEDDG-VTIQPFGATIPYYFTGH- 232 (333)
T ss_dssp TTBCCEEEEEECTTSCCEEEEEE-E-ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS-SSEEEEEEEEEEECCSS-
T ss_pred ccCCCceEEEEeCCCCEEEEeec-C-CCcccceEECCCCCEEEEEeCCCCeEEEEEecCCC-cCcccccceEEEecCCC-
Confidence 3677788776555433222 2 12457899999998655 44567899999986310 00111 1112222
Q ss_pred cceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCC---CCCCCcEEEEEeCCCCEEEEEcCC
Q 043172 483 TKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPAN---RNLQYPRCLDFSPGGGFMAVGNAA 550 (564)
Q Consensus 483 ~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~---~~~~~V~~l~fspdg~~Lasgs~d 550 (564)
..+..++++++|+++++... ++.|.+|+. .+..+..+.... ++...+.+++|+|+++.|++++.+
T Consensus 233 ~~~~~i~~d~~G~l~v~~~~--~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 233 EGPDSCCIDSDDNLYVAMYG--QGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp SEEEEEEEBTTCCEEEEEET--TTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred CCCCceEECCCCCEEEEEcC--CCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 46788999999998777766 789999998 455555443332 122268899999998877766655
No 175
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.77 E-value=8.3e-16 Score=151.54 Aligned_cols=242 Identities=8% Similarity=0.096 Sum_probs=176.3
Q ss_pred CCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEe------CCcCeEEEEEe-eCCCEEEEEeC-CCe
Q 043172 258 DESSTGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFL------EDCPVRKASFL-PDGSQAIIAGR-RKF 329 (564)
Q Consensus 258 ~~~h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~------~~~~I~~l~fs-pdg~~l~s~~~-dg~ 329 (564)
..+|-..+.+|+++|++.++++...++.|.+|+.++. .+..+.. +...+..++++ ++++.+++... ++.
T Consensus 25 ~~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~---~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~ 101 (286)
T 1q7f_A 25 MEGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGR---FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQ 101 (286)
T ss_dssp STTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSC---EEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCE
T ss_pred CCCccCCCceEEECCCCCEEEEECCCCEEEEECCCCc---EEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCE
Confidence 4567778999999999998888888999999987632 3444432 22467899995 56655555433 789
Q ss_pred EEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee---ecCcEEEEEEecCCCE
Q 043172 330 FYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK---MNGTVRSLAFADDGKQ 406 (564)
Q Consensus 330 i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~---~~~~V~~l~~spdg~~ 406 (564)
|++|+. +++.... +.......+..++++|+|+++++...++.|.+|+. .++.+..+. +...+.+++++|+|++
T Consensus 102 i~~~d~-~g~~~~~--~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~g~l 177 (286)
T 1q7f_A 102 IQIYNQ-YGQFVRK--FGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEI 177 (286)
T ss_dssp EEEECT-TSCEEEE--ECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEE
T ss_pred EEEECC-CCcEEEE--ecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEECCCCCE
Confidence 999994 4554332 22122235789999999998877777899999996 456666654 2346899999999997
Q ss_pred EEEEeCCCeEEEEECCCCceeEEEeecC-CcceEEEEECCCCCEEEEEeCCC-cEEEEeCCcccCCcceeeEEccccc--
Q 043172 407 LLSSGGDGQVYHWDLRTRTCIHRAVDEG-CINGTALCTSPDGTFFAAGSDSG-IVNVYNRQEFLGGKRKPIKTIENLT-- 482 (564)
Q Consensus 407 l~s~s~dg~V~lwD~~~~~~~~~~~~~~-~~~i~~l~~sp~g~~lasgs~dg-~V~iwd~~~~~~~~~~~~~~~~~~~-- 482 (564)
+++.+.++.|++||.. +..+..+...+ ...+..++++++|+++++...++ .|.+|+... +.+..+..+.
T Consensus 178 ~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g------~~~~~~~~~~~~ 250 (286)
T 1q7f_A 178 FISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG------QLISALESKVKH 250 (286)
T ss_dssp EEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS------CEEEEEEESSCC
T ss_pred EEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCC------CEEEEEcccCCC
Confidence 7777778999999984 55565554432 23578999999999888888776 999999653 4455554332
Q ss_pred cceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCC
Q 043172 483 TKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSY 516 (564)
Q Consensus 483 ~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~ 516 (564)
..+.+++++|+|+++++ +. ++.|++|++...
T Consensus 251 ~~~~~i~~~~~g~l~vs-~~--~~~v~v~~~~~~ 281 (286)
T 1q7f_A 251 AQCFDVALMDDGSVVLA-SK--DYRLYIYRYVQL 281 (286)
T ss_dssp SCEEEEEEETTTEEEEE-ET--TTEEEEEECSCC
T ss_pred CcceeEEECCCCcEEEE-CC--CCeEEEEEcccc
Confidence 34778999999986666 55 899999998653
No 176
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.77 E-value=1.3e-15 Score=164.76 Aligned_cols=298 Identities=13% Similarity=0.122 Sum_probs=210.7
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEe----eCCCEEEEEe-CCCeEEEEECCC
Q 043172 263 GPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFL----PDGSQAIIAG-RRKFFYSLDLVK 337 (564)
Q Consensus 263 ~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fs----pdg~~l~s~~-~dg~i~iwdl~~ 337 (564)
..+.++.|+|+|++|++++.++.|.+||+...+...+..+.... ....++|+ |+|+++++++ ..+.|.|+|..+
T Consensus 197 ~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t 275 (567)
T 1qks_A 197 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET 275 (567)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTT
T ss_pred CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCC
Confidence 35779999999999999999999999998533445666776544 35789999 6999999887 458999999999
Q ss_pred Cceeeeccccc--------cCCcceEEEEEcCCCCEEE-EEeCCCeEEEEECCCCcEEE--EeeecCcEEEEEEecCCCE
Q 043172 338 AKADKIGPLVG--------REEKSLEFFEVSPDSSVIA-FVGNEGYILLVSSKTKELIG--TLKMNGTVRSLAFADDGKQ 406 (564)
Q Consensus 338 ~~~~~~~~~~~--------~~~~~v~~~~~spdg~~la-~~~~dg~I~lwd~~t~~~~~--~~~~~~~V~~l~~spdg~~ 406 (564)
.+..+...+.+ |....+..+..++++..++ .....|.|.++|..+..... .+.......++.|+|+|++
T Consensus 276 ~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~ 355 (567)
T 1qks_A 276 LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRY 355 (567)
T ss_dssp CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCE
T ss_pred CcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCE
Confidence 88766544332 1223577888899866544 44556999999998765433 2334456788999999999
Q ss_pred EEEEe-CCCeEEEEECCCCceeEEEee-c---CCcceEEEEECCCCCEE-EEEe-CCCcEEEEeCCccc--CCcceeeEE
Q 043172 407 LLSSG-GDGQVYHWDLRTRTCIHRAVD-E---GCINGTALCTSPDGTFF-AAGS-DSGIVNVYNRQEFL--GGKRKPIKT 477 (564)
Q Consensus 407 l~s~s-~dg~V~lwD~~~~~~~~~~~~-~---~~~~i~~l~~sp~g~~l-asgs-~dg~V~iwd~~~~~--~~~~~~~~~ 477 (564)
|+++. .++.|.++|+.+++.+..+.. . +......+ ++|++..+ +++. .++.|.|+|..... ....+.+.+
T Consensus 356 ~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~ 434 (567)
T 1qks_A 356 FITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDS 434 (567)
T ss_dssp EEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEE
T ss_pred EEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEE
Confidence 87765 478999999999988776654 2 11112222 57875544 4443 46899999988620 011377777
Q ss_pred ccccccceeEEEEcCCCcEEEEEecCC-----CCeEEEEEcCCC---------cee--ccCCCCCCCCCCcEEEEEeCCC
Q 043172 478 IENLTTKVDFMKFNNDAQILAICSTMK-----KNSLKLIHIPSY---------NVF--SNWPPANRNLQYPRCLDFSPGG 541 (564)
Q Consensus 478 ~~~~~~~I~~l~fspdg~~La~~s~~~-----d~~I~lwdl~s~---------~~~--~~~~~~~~~~~~V~~l~fspdg 541 (564)
+......-..+.++|++++|.+..... .++|.++|+.+. ..+ ..|.........+..+.|+|+|
T Consensus 435 i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 514 (567)
T 1qks_A 435 FPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDG 514 (567)
T ss_dssp EECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTS
T ss_pred EecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCC
Confidence 775544445588999999999877421 259999999876 222 1111222223578999999999
Q ss_pred CEEEEEcC-----CCeEEEEEcCCCC
Q 043172 542 GFMAVGNA-----AGKVFLYKLNHYH 562 (564)
Q Consensus 542 ~~Lasgs~-----dG~V~lw~l~~~~ 562 (564)
+++.++.. ++.|.|+|..+++
T Consensus 515 ~~~~~s~~~~~~~~~~i~v~D~~t~~ 540 (567)
T 1qks_A 515 TEVWFSVWNGKDQESALVVVDDKTLE 540 (567)
T ss_dssp SEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred CEEEEEeecCCCCCCcEEEEECCCce
Confidence 98887643 7899999987754
No 177
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.75 E-value=8.6e-16 Score=155.21 Aligned_cols=243 Identities=14% Similarity=0.086 Sum_probs=177.4
Q ss_pred CCCeeEEEEcCCCCEEEEEeCC------------------------CcEEEEEecCCCCceeEEEE-eCCcCeEEEEEee
Q 043172 262 TGPINSVQFHRNAQLLLVAGLD------------------------RRLRFFQIDGKRNTKIQSIF-LEDCPVRKASFLP 316 (564)
Q Consensus 262 ~~~V~~l~fspdg~~l~s~s~d------------------------g~I~lwd~~~~~~~~~~~~~-~~~~~I~~l~fsp 316 (564)
-+.|.+|+++|+|+++++.+.+ ++|.+||.... ..+..+. .+-..+..++++|
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g--~~~~~~~~~~~~~p~gia~d~ 100 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNA--EILQSSGKNLFYLPHGLSIDT 100 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTC--CEEEEECTTTCSSEEEEEECT
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCC--eEEeccCCCccCCceEEEECC
Confidence 3679999999999999888777 47899987633 3343332 2334688999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCc--eeeeccc--c---ccCCcceEEEEEcC-CCCEEEEEe-CCCeEEEEECCCCcEEE
Q 043172 317 DGSQAIIAGRRKFFYSLDLVKAK--ADKIGPL--V---GREEKSLEFFEVSP-DSSVIAFVG-NEGYILLVSSKTKELIG 387 (564)
Q Consensus 317 dg~~l~s~~~dg~i~iwdl~~~~--~~~~~~~--~---~~~~~~v~~~~~sp-dg~~la~~~-~dg~I~lwd~~t~~~~~ 387 (564)
+|+.+++...++.|++|+..... ...+... . .........++++| ++.++++.+ .++.|.+|+ .++..+.
T Consensus 101 ~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~ 179 (329)
T 3fvz_A 101 DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVT 179 (329)
T ss_dssp TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEE
T ss_pred CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEE
Confidence 99977777788999999986542 2111110 0 11112578999999 788877776 689999999 6777777
Q ss_pred Eeeec-----------CcEEEEEEecC-CCEEEEEeCCCeEEEEECCCCceeEEEeec-CCcceEEEEECCCCCEEEE--
Q 043172 388 TLKMN-----------GTVRSLAFADD-GKQLLSSGGDGQVYHWDLRTRTCIHRAVDE-GCINGTALCTSPDGTFFAA-- 452 (564)
Q Consensus 388 ~~~~~-----------~~V~~l~~spd-g~~l~s~s~dg~V~lwD~~~~~~~~~~~~~-~~~~i~~l~~sp~g~~las-- 452 (564)
.+... ..+.+++++|+ +.++++...++.|++|+..+++.+..+... ....+..++++| +..+++
T Consensus 180 ~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g 258 (329)
T 3fvz_A 180 QWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNG 258 (329)
T ss_dssp EECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEEC
T ss_pred EeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCC
Confidence 76521 23899999998 677777777899999999988888877532 233567899999 433333
Q ss_pred -----EeCCCcEEEEeCCcccCCcceeeEEc---cccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCC
Q 043172 453 -----GSDSGIVNVYNRQEFLGGKRKPIKTI---ENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPS 515 (564)
Q Consensus 453 -----gs~dg~V~iwd~~~~~~~~~~~~~~~---~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s 515 (564)
.+.+..|.+|+..++ +.+..+ ..+...+..|+++|+|.++++.+. ++.|++|++..
T Consensus 259 ~~~v~~~~~~~v~~~~~~~g-----~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~--~~~I~~~~~~~ 322 (329)
T 3fvz_A 259 KPYFGDQEPVQGFVMNFSSG-----EIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAH--TNTVWKFTLTE 322 (329)
T ss_dssp CCCTTCSCCCCEEEEETTTC-----CEEEEECCSSSCCSSEEEEEECTTSEEEEEESS--SCCEEEEEEEE
T ss_pred CEEeccCCCcEEEEEEcCCC-----eEEEEEcCCCCccCCeeEEEECCCCCEEEEECC--CCEEEEEeCCc
Confidence 334558999999887 666666 356677899999999976666666 88999999853
No 178
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.75 E-value=1.3e-16 Score=176.73 Aligned_cols=238 Identities=11% Similarity=0.088 Sum_probs=160.4
Q ss_pred EEEEc--CCCCE-EEEEeC-CCcEEEEEec--C-CCCceeEEEEe-----CCcCeEEEEEeeCCCEEEEEeCC-------
Q 043172 267 SVQFH--RNAQL-LLVAGL-DRRLRFFQID--G-KRNTKIQSIFL-----EDCPVRKASFLPDGSQAIIAGRR------- 327 (564)
Q Consensus 267 ~l~fs--pdg~~-l~s~s~-dg~I~lwd~~--~-~~~~~~~~~~~-----~~~~I~~l~fspdg~~l~s~~~d------- 327 (564)
+..|+ |||+. |+.++. +..|.+|++. + . ....+.. +...+..++|+|||+.|++++.+
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~---~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~ 157 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGA---VPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPS 157 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCC---CCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTT
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCC---CCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCC
Confidence 55565 99998 776654 4555555554 2 2 2333433 55678899999999999998866
Q ss_pred ---CeEEEEECCC------Cceeeecccc-ccCCcceEEEEEcCCCCEEEEEeCC--------CeEEEEECC-CC---cE
Q 043172 328 ---KFFYSLDLVK------AKADKIGPLV-GREEKSLEFFEVSPDSSVIAFVGNE--------GYILLVSSK-TK---EL 385 (564)
Q Consensus 328 ---g~i~iwdl~~------~~~~~~~~~~-~~~~~~v~~~~~spdg~~la~~~~d--------g~I~lwd~~-t~---~~ 385 (564)
..|++|++.+ +.... +. .+. ..+..++|||||++|++++.+ ..|++||+. ++ +.
T Consensus 158 ~~~~~i~~~~~~~~~~~~~~~~~~---l~~~~~-~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~ 233 (662)
T 3azo_A 158 DVRRFLAAVPLDGSAAADRSAVRE---LSDDAH-RFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADT 233 (662)
T ss_dssp CEEEEEEEEETTSTTTTCGGGSEE---SSCSCS-SEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEE
T ss_pred CceeEEEEEECCCCccccCCceeE---EEecCC-CcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCccccc
Confidence 5899999998 65433 32 322 257789999999999988754 489999998 56 44
Q ss_pred EEEee-ecCcEEEEEEecCCCEEEEEeCCC--eEEEEECCCCceeEEEeecCCc-------ceEEEEECCCCCEEEEEeC
Q 043172 386 IGTLK-MNGTVRSLAFADDGKQLLSSGGDG--QVYHWDLRTRTCIHRAVDEGCI-------NGTALCTSPDGTFFAAGSD 455 (564)
Q Consensus 386 ~~~~~-~~~~V~~l~~spdg~~l~s~s~dg--~V~lwD~~~~~~~~~~~~~~~~-------~i~~l~~sp~g~~lasgs~ 455 (564)
..... +...+..++|+|||+++++++.++ .|++||+.+++.......+... .+..++|+|+++++++++.
T Consensus 234 ~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~ 313 (662)
T 3azo_A 234 RTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK 313 (662)
T ss_dssp EEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS
T ss_pred EEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc
Confidence 43333 367899999999999887887788 7778887666654322222111 1457889999999999999
Q ss_pred CCcEEEE--eCCcccCCcceeeEEccccccceeEE-EEcCCCcEEEEEecCCCCeEEEEEcCCCce
Q 043172 456 SGIVNVY--NRQEFLGGKRKPIKTIENLTTKVDFM-KFNNDAQILAICSTMKKNSLKLIHIPSYNV 518 (564)
Q Consensus 456 dg~V~iw--d~~~~~~~~~~~~~~~~~~~~~I~~l-~fspdg~~La~~s~~~d~~I~lwdl~s~~~ 518 (564)
+.++|| |+..+ .+..+..+...+..+ +++++.-++++++......|.+|++.+++.
T Consensus 314 -~~~~l~~~d~~~~------~~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~ 372 (662)
T 3azo_A 314 -GAAVLGILDPESG------ELVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRA 372 (662)
T ss_dssp -SSCEEEEEETTTT------EEEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred -CccEEEEEECCCC------cEEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCce
Confidence 999999 44442 356777777777766 444333233333331112466666666654
No 179
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.74 E-value=1.4e-15 Score=150.80 Aligned_cols=240 Identities=12% Similarity=0.078 Sum_probs=175.2
Q ss_pred CCCCeeEEEEcCCCC-EEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCc
Q 043172 261 STGPINSVQFHRNAQ-LLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAK 339 (564)
Q Consensus 261 h~~~V~~l~fspdg~-~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~ 339 (564)
+.....+++|+|+++ +++++..++.|.+|+..+. ...+..+...+.+++|+|+|+.+++...++.|.+||..+++
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~ 101 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ----LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGE 101 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC----EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCC
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC----eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCc
Confidence 445678999999998 7788888999999998753 45556677789999999999987776667899999998887
Q ss_pred eeeeccc-cccCCcceEEEEEcCCCCEEEEE----e-------------CCCeEEEEECCCCcEEEEeeecCcEEEEEEe
Q 043172 340 ADKIGPL-VGREEKSLEFFEVSPDSSVIAFV----G-------------NEGYILLVSSKTKELIGTLKMNGTVRSLAFA 401 (564)
Q Consensus 340 ~~~~~~~-~~~~~~~v~~~~~spdg~~la~~----~-------------~dg~I~lwd~~t~~~~~~~~~~~~V~~l~~s 401 (564)
...+... .+.....+..++++|+|+++++. + ..+.|..++.. ++......+...+..++|+
T Consensus 102 ~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s 180 (296)
T 3e5z_A 102 WESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFL 180 (296)
T ss_dssp EEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEEC
T ss_pred EEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEEC
Confidence 6543221 11111245679999999988873 2 13567777765 5554444456678999999
Q ss_pred cCCCEEEEEeCCCeEEEEECC-CCce---eEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEE
Q 043172 402 DDGKQLLSSGGDGQVYHWDLR-TRTC---IHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKT 477 (564)
Q Consensus 402 pdg~~l~s~s~dg~V~lwD~~-~~~~---~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~ 477 (564)
|+++.|++.+.++.|++|++. .+.. ...+ ......+..++++++|+++++. ++.|.+|+.. + +.+..
T Consensus 181 ~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g-----~~~~~ 251 (296)
T 3e5z_A 181 PSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-G-----DELGR 251 (296)
T ss_dssp TTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-S-----CEEEE
T ss_pred CCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-C-----CEEEE
Confidence 999988777778999999997 4544 2333 2233345679999999866655 7889999987 3 56666
Q ss_pred ccccccceeEEEE-cCCCcEEEEEecCCCCeEEEEEcCCCce
Q 043172 478 IENLTTKVDFMKF-NNDAQILAICSTMKKNSLKLIHIPSYNV 518 (564)
Q Consensus 478 ~~~~~~~I~~l~f-spdg~~La~~s~~~d~~I~lwdl~s~~~ 518 (564)
+..+.. +++++| +|+++.|++++. +.+.-++..+..+
T Consensus 252 ~~~~~~-~~~~~f~~~d~~~L~v~t~---~~l~~~~~~~~~~ 289 (296)
T 3e5z_A 252 VLTPQT-TSNLCFGGPEGRTLYMTVS---TEFWSIETNVRGL 289 (296)
T ss_dssp EECSSC-CCEEEEESTTSCEEEEEET---TEEEEEECSCCBC
T ss_pred EECCCC-ceeEEEECCCCCEEEEEcC---CeEEEEEcccccc
Confidence 766666 899999 589999999886 4455556655443
No 180
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.74 E-value=2.2e-14 Score=141.43 Aligned_cols=278 Identities=7% Similarity=0.013 Sum_probs=196.3
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEE--eCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCC
Q 043172 261 STGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIF--LEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKA 338 (564)
Q Consensus 261 h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~--~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~ 338 (564)
+...+.+|+++|+|.++++...++.|.+|+.. .. +..+. .+...+.+++++++|..+++...++.|..|+.. +
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~---~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g 87 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GK---ITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-G 87 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CC---EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CC---eEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-C
Confidence 45689999999999988877668899999876 22 22222 245678999999999877776668899999986 4
Q ss_pred ceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee--ecCcEEEEEEecCCCEEEEEeCCCeE
Q 043172 339 KADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK--MNGTVRSLAFADDGKQLLSSGGDGQV 416 (564)
Q Consensus 339 ~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~--~~~~V~~l~~spdg~~l~s~s~dg~V 416 (564)
..... .+.. ....+..+++.++|.++++...++.|.+|+. +++...... ....+.++++.++|+++++...++.|
T Consensus 88 ~~~~~-~~~~-~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i 164 (299)
T 2z2n_A 88 IIKEY-TLPN-PDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAI 164 (299)
T ss_dssp CEEEE-ECSS-TTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEE
T ss_pred cEEEE-eCCC-cCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEE
Confidence 43222 1221 2235889999999988887777889999998 665543222 34568999999999877777667899
Q ss_pred EEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceee-EEccccccceeEEEEcCCCc
Q 043172 417 YHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPI-KTIENLTTKVDFMKFNNDAQ 495 (564)
Q Consensus 417 ~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~-~~~~~~~~~I~~l~fspdg~ 495 (564)
..||. +++............+..++++++|+++++....+.|.+|+. .+ ... ..+......+.++++.++|+
T Consensus 165 ~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g-----~~~~~~~~~~~~~~~~i~~~~~g~ 237 (299)
T 2z2n_A 165 GRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SG-----EITEFKIPTPNARPHAITAGAGID 237 (299)
T ss_dssp EEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TC-----CEEEEECSSTTCCEEEEEECSTTC
T ss_pred EEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CC-----cEEEEECCCCCCCceeEEECCCCC
Confidence 99999 666544322223345789999999997777767889999998 43 211 22333456788999999998
Q ss_pred EEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCC
Q 043172 496 ILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNH 560 (564)
Q Consensus 496 ~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~ 560 (564)
++++... ++.|.+|+. ++.. ..+... .+...+.++++ ++|.++++.+ .+.|..++...
T Consensus 238 l~v~~~~--~~~i~~~d~-~g~~-~~~~~~-~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~ 295 (299)
T 2z2n_A 238 LWFTEWG--ANKIGRLTS-NNII-EEYPIQ-IKSAEPHGICF-DGETIWFAME-CDKIGKLTLIK 295 (299)
T ss_dssp EEEEETT--TTEEEEEET-TTEE-EEEECS-SSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC-
T ss_pred EEEeccC--CceEEEECC-CCce-EEEeCC-CCCCccceEEe-cCCCEEEEec-CCcEEEEEcCc
Confidence 6665544 789999998 4443 233211 23356899999 8888776655 56677777664
No 181
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.72 E-value=7.9e-17 Score=165.91 Aligned_cols=236 Identities=12% Similarity=0.024 Sum_probs=163.2
Q ss_pred eEEEEEeeCCCEEEEEeCC---CeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE
Q 043172 309 VRKASFLPDGSQAIIAGRR---KFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKEL 385 (564)
Q Consensus 309 I~~l~fspdg~~l~s~~~d---g~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~ 385 (564)
+..++|+|+|++|+++... ..|++|++.+++...+. .........+.|+|+|++|++++.++.|++|++.+++.
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~---~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~ 114 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLT---EGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEE 114 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECC---CSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEee---cCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCc
Confidence 6778999999998887543 47999999988765432 22221223378999999999999999999999999887
Q ss_pred EEEee-ecCcEEE-------------------EEEecCCCEEEEE-----eCCCeEEEEECCCCceeEEEeecCCcceEE
Q 043172 386 IGTLK-MNGTVRS-------------------LAFADDGKQLLSS-----GGDGQVYHWDLRTRTCIHRAVDEGCINGTA 440 (564)
Q Consensus 386 ~~~~~-~~~~V~~-------------------l~~spdg~~l~s~-----s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~ 440 (564)
..... +...... +.|+|+++.++.+ ..+..|++||+.+++...... +...+..
T Consensus 115 ~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~--~~~~~~~ 192 (396)
T 3c5m_A 115 QVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQ--DTAWLGH 192 (396)
T ss_dssp EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEE--ESSCEEE
T ss_pred EEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeecc--CCccccc
Confidence 66555 3332222 3567777766554 356789999999887655443 2335788
Q ss_pred EEECC-CCCEEEEEeCC------CcEEEEeCCcccCCcceeeEEcccc--ccceeEEEEcCCCcEEEEEecC-CC--CeE
Q 043172 441 LCTSP-DGTFFAAGSDS------GIVNVYNRQEFLGGKRKPIKTIENL--TTKVDFMKFNNDAQILAICSTM-KK--NSL 508 (564)
Q Consensus 441 l~~sp-~g~~lasgs~d------g~V~iwd~~~~~~~~~~~~~~~~~~--~~~I~~l~fspdg~~La~~s~~-~d--~~I 508 (564)
+.|+| +++.|+..+.+ ..|.+|++... . ...+..+ ...+..++|+|+|++|++++.. .. +.|
T Consensus 193 ~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~-----~-~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l 266 (396)
T 3c5m_A 193 PIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGS-----N-VRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVI 266 (396)
T ss_dssp EEEETTEEEEEEEEECSCSSSCSCCCEEEETTSC-----C-CEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEE
T ss_pred ceECCCCCCEEEEEecCCCCCCCceEEEEECCCC-----c-eeEeeccCCCccccceEECCCCCEEEEEecCCCCccceE
Confidence 99999 78877776643 35888888653 2 2233322 3357889999999988877652 12 449
Q ss_pred EEEEcCCCceeccCCCCCCCCCCcEEEEEeC-CCCEEEEEc----------------CCCeEEEEEcCCC
Q 043172 509 KLIHIPSYNVFSNWPPANRNLQYPRCLDFSP-GGGFMAVGN----------------AAGKVFLYKLNHY 561 (564)
Q Consensus 509 ~lwdl~s~~~~~~~~~~~~~~~~V~~l~fsp-dg~~Lasgs----------------~dG~V~lw~l~~~ 561 (564)
++|++.++....... .. ... +.|+| +|++|++++ .++.|++|++...
T Consensus 267 ~~~d~~~g~~~~l~~-~~----~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (396)
T 3c5m_A 267 YKANPETLENEEVMV-MP----PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAK 330 (396)
T ss_dssp EEECTTTCCEEEEEE-CC----SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTT
T ss_pred EEEECCCCCeEEeee-CC----CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccC
Confidence 999998876533211 11 123 89999 999888754 3478999998654
No 182
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.71 E-value=3e-15 Score=167.34 Aligned_cols=249 Identities=9% Similarity=0.011 Sum_probs=175.0
Q ss_pred CCCCCCeeEEEEcCCCCEEEEEeCCC-----cEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCe----
Q 043172 259 ESSTGPINSVQFHRNAQLLLVAGLDR-----RLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKF---- 329 (564)
Q Consensus 259 ~~h~~~V~~l~fspdg~~l~s~s~dg-----~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~---- 329 (564)
.+|...+.+++|||||++||.++.++ .|++|++.++. .+.. ......+..++|+|||+.|++++.++.
T Consensus 121 ~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~--~~~~-~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~ 197 (710)
T 2xdw_A 121 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAK--ELPD-VLERVKFSCMAWTHDGKGMFYNAYPQQDGKS 197 (710)
T ss_dssp TTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTE--EEEE-EEEEECSCCEEECTTSSEEEEEECCCCSSCC
T ss_pred cCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCC--CCcc-cccCcccceEEEEeCCCEEEEEEECCccccc
Confidence 34656799999999999998876543 89999998653 2221 112223678999999999999887655
Q ss_pred ------------EEEEECCCCcee--eeccccccCCcceEEEEEcCCCCEEEEEeC-----CCeEEEEECCC------Cc
Q 043172 330 ------------FYSLDLVKAKAD--KIGPLVGREEKSLEFFEVSPDSSVIAFVGN-----EGYILLVSSKT------KE 384 (564)
Q Consensus 330 ------------i~iwdl~~~~~~--~~~~~~~~~~~~v~~~~~spdg~~la~~~~-----dg~I~lwd~~t------~~ 384 (564)
|++|++.++... .+.....+. ..+..+.|+|+|++|++++. +..|++||+.+ +.
T Consensus 198 ~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~-~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 276 (710)
T 2xdw_A 198 DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEP-KWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGI 276 (710)
T ss_dssp SSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCT-TCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSS
T ss_pred cccccccCCCCEEEEEECCCCcccceEEeccCCCC-eEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCc
Confidence 999999887632 121222222 24678999999999988765 56899999987 52
Q ss_pred -EEEEee-ecCcEEEEEEecCCCEEEEEeCC----CeEEEEECCCCc--eeEEEeecCC-cceEEEEECCCCCEEEEEeC
Q 043172 385 -LIGTLK-MNGTVRSLAFADDGKQLLSSGGD----GQVYHWDLRTRT--CIHRAVDEGC-INGTALCTSPDGTFFAAGSD 455 (564)
Q Consensus 385 -~~~~~~-~~~~V~~l~~spdg~~l~s~s~d----g~V~lwD~~~~~--~~~~~~~~~~-~~i~~l~~sp~g~~lasgs~ 455 (564)
....+. +...+.. .|+|+|..|+..+.. +.|++||+.++. ....+..+.. ..+..++|++++.++++...
T Consensus 277 ~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~ 355 (710)
T 2xdw_A 277 LKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLH 355 (710)
T ss_dssp CCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEE
T ss_pred cceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEE
Confidence 233333 4444544 488999888776653 469999998764 2233443333 35678889877778888888
Q ss_pred CCc--EEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEE--ecCCCCeEEEEEcCCCc
Q 043172 456 SGI--VNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAIC--STMKKNSLKLIHIPSYN 517 (564)
Q Consensus 456 dg~--V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~--s~~~d~~I~lwdl~s~~ 517 (564)
++. |.+|++..+ +.+..+..+...+..+.++|++..|++. +....+.|++|++.+++
T Consensus 356 ~g~~~l~~~~~~~g-----~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 356 DVKNTLQLHDLATG-----ALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp TTEEEEEEEETTTC-----CEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CCEEEEEEEECCCC-----CEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 885 556676554 5566676667788899999999766644 33346789999998766
No 183
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.71 E-value=3.2e-14 Score=143.30 Aligned_cols=233 Identities=15% Similarity=0.142 Sum_probs=166.3
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCC----CeEEEEECC
Q 043172 261 STGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRR----KFFYSLDLV 336 (564)
Q Consensus 261 h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~d----g~i~iwdl~ 336 (564)
+...+.+++|+|++++++++..++.|.+|+..+.. .......+...+.+++|+|+|+.++++..+ +.|++||..
T Consensus 43 ~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~ 120 (333)
T 2dg1_A 43 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKE--IKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATEN 120 (333)
T ss_dssp SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCC--EEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTT
T ss_pred cCccccCcEECCCCCEEEEECCCCEEEEEeCCCCc--EEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCC
Confidence 55678999999999988888889999999887543 222223456789999999999877776655 689999998
Q ss_pred CCceeeeccccccCCcceEEEEEcCCCCEEEEEeC------CCeEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEE
Q 043172 337 KAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGN------EGYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSS 410 (564)
Q Consensus 337 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~------dg~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~ 410 (564)
++....+..... ....+..++++|+|+++++... .+.|..++..+++..........+.+++|+|+++.|+++
T Consensus 121 ~~~~~~~~~~~~-~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~ 199 (333)
T 2dg1_A 121 GDNLQDIIEDLS-TAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVT 199 (333)
T ss_dssp SCSCEEEECSSS-SCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEE
T ss_pred CCEEEEEEccCc-cCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEE
Confidence 887543221111 2236889999999988776653 367888887766655444444568899999999866555
Q ss_pred -eCCCeEEEEECCC-CceeEEE-----e-ecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccc
Q 043172 411 -GGDGQVYHWDLRT-RTCIHRA-----V-DEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLT 482 (564)
Q Consensus 411 -s~dg~V~lwD~~~-~~~~~~~-----~-~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~ 482 (564)
+.++.|++||+.+ +..+..+ . ......+..++++++|+++++...++.|.+|+... +.+..+..+.
T Consensus 200 ~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g------~~~~~~~~~~ 273 (333)
T 2dg1_A 200 ETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRG------YPIGQILIPG 273 (333)
T ss_dssp EGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTS------CEEEEEECTT
T ss_pred eCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCCC------CEEEEEEcCC
Confidence 4578999999964 3322211 1 11113567899999999888777888999999853 4455544332
Q ss_pred c------ceeEEEEcCCCcEEEEEec
Q 043172 483 T------KVDFMKFNNDAQILAICST 502 (564)
Q Consensus 483 ~------~I~~l~fspdg~~La~~s~ 502 (564)
. .+.+++|+|++..|++++.
T Consensus 274 ~~~g~~~~~~~~~~~~dg~~L~v~~~ 299 (333)
T 2dg1_A 274 RDEGHMLRSTHPQFIPGTNQLIICSN 299 (333)
T ss_dssp GGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred CccccccCcceEEECCCCCEEEEEeC
Confidence 2 6899999999877777665
No 184
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.71 E-value=1.6e-14 Score=156.10 Aligned_cols=273 Identities=10% Similarity=0.064 Sum_probs=195.5
Q ss_pred CCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECC--CCceeeecccccc
Q 043172 272 RNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLV--KAKADKIGPLVGR 349 (564)
Q Consensus 272 pdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~--~~~~~~~~~~~~~ 349 (564)
|.+.++++...+++|.++|.. +...+..+... ..+..+.|+|+|+++++++.++.|.+||+. +++... .+...
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~--t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~--~i~~G 239 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGS--TYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVA--EIKIG 239 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETT--TCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEE--EEECC
T ss_pred CCceEEEEeCCCCeEEEEECC--CCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeE--EEecC
Confidence 455667777789999999987 44566666643 356799999999999999999999999996 665533 23322
Q ss_pred CCcceEEEEEc----CCCCEEEEEeC-CCeEEEEECCCCcEEEEeee------------cCcEEEEEEecCCCEEE-EEe
Q 043172 350 EEKSLEFFEVS----PDSSVIAFVGN-EGYILLVSSKTKELIGTLKM------------NGTVRSLAFADDGKQLL-SSG 411 (564)
Q Consensus 350 ~~~~v~~~~~s----pdg~~la~~~~-dg~I~lwd~~t~~~~~~~~~------------~~~V~~l~~spdg~~l~-s~s 411 (564)
. ....++|+ |+|+++++++. .+.|.++|..+.+.+..+.. ...+..+.+++++..++ ...
T Consensus 240 ~--~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~ 317 (567)
T 1qks_A 240 S--EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK 317 (567)
T ss_dssp S--EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred C--CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEec
Confidence 2 36789999 69999888765 59999999999999887752 12678888888766544 445
Q ss_pred CCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEe-CCCcEEEEeCCcccCCcceeeEEccc-----cccce
Q 043172 412 GDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGS-DSGIVNVYNRQEFLGGKRKPIKTIEN-----LTTKV 485 (564)
Q Consensus 412 ~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs-~dg~V~iwd~~~~~~~~~~~~~~~~~-----~~~~I 485 (564)
..|.|.++|......+.............+.|+|+|++|++++ .++.|.++|+.+. +.+..+.. |.+
T Consensus 318 ~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~-----kl~~~i~vgg~~Phpg-- 390 (567)
T 1qks_A 318 ETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG-----KLVAIEDTGGQTPHPG-- 390 (567)
T ss_dssp TTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT-----EEEEEEECSSSSBCCT--
T ss_pred CCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCC-----cEEEEEeccCcCCCCc--
Confidence 5799999999876543332222233456889999999887765 5789999999986 55555432 221
Q ss_pred eEEE-EcCCCcEEEEEecCCCCeEEEEEcCC-------CceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcC-------C
Q 043172 486 DFMK-FNNDAQILAICSTMKKNSLKLIHIPS-------YNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNA-------A 550 (564)
Q Consensus 486 ~~l~-fspdg~~La~~s~~~d~~I~lwdl~s-------~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~-------d 550 (564)
..+. ++|++..+.+.+...++.|.+++..+ .++++.++... ..-..+.++|++++|.+.+. .
T Consensus 391 ~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g---~g~~~i~~~p~~~~l~v~~~~~~~~~~~ 467 (567)
T 1qks_A 391 RGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALG---GGSLFIKTHPNSQYLYVDATLNPEAEIS 467 (567)
T ss_dssp TCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC---SCCCCEECCTTCSEEEEECTTCSSHHHH
T ss_pred cceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCC---CCCEEEEeCCCCCeEEEecCCCCCcccC
Confidence 1222 58886555554433378999999987 55666555432 22234678999999998763 3
Q ss_pred CeEEEEEcCCC
Q 043172 551 GKVFLYKLNHY 561 (564)
Q Consensus 551 G~V~lw~l~~~ 561 (564)
+.|.+||+.+.
T Consensus 468 ~~v~v~d~~~~ 478 (567)
T 1qks_A 468 GSVAVFDIKAM 478 (567)
T ss_dssp TCEEEEEGGGC
T ss_pred ceEEEEECCcc
Confidence 58999999876
No 185
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.71 E-value=4.1e-14 Score=145.43 Aligned_cols=278 Identities=9% Similarity=-0.031 Sum_probs=190.1
Q ss_pred EEcCCCCEEEEEeC--CC---cEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEe----------CCCeEEEE
Q 043172 269 QFHRNAQLLLVAGL--DR---RLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAG----------RRKFFYSL 333 (564)
Q Consensus 269 ~fspdg~~l~s~s~--dg---~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~----------~dg~i~iw 333 (564)
...|++.+++++.. .. +|.+||.. +...+..+.....+ .++|+|+|++|+++. .++.|.+|
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~--t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~vi 102 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAG--SGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVF 102 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECC--CCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEE
Confidence 34467777776653 22 77888876 44466666654444 999999999999886 35789999
Q ss_pred ECCCCceeeeccccc--cC--CcceEEEEEcCCCCEEEEEeC--CCeEEEEECCCCcEEEE-eeecCcEEEEEEecCC-C
Q 043172 334 DLVKAKADKIGPLVG--RE--EKSLEFFEVSPDSSVIAFVGN--EGYILLVSSKTKELIGT-LKMNGTVRSLAFADDG-K 405 (564)
Q Consensus 334 dl~~~~~~~~~~~~~--~~--~~~v~~~~~spdg~~la~~~~--dg~I~lwd~~t~~~~~~-~~~~~~V~~l~~spdg-~ 405 (564)
|..+.+......+.+ .. ......+.|+|+|++|+++.. ++.|.++| .+++.+.. +...+. +.+.|++ +
T Consensus 103 D~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~ 178 (373)
T 2mad_H 103 DPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPS 178 (373)
T ss_pred ECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce---EEEEeCCCc
Confidence 999877654333320 00 012457999999999999874 47899999 99999888 664443 4455654 4
Q ss_pred EEEEEeCCCeEEEEECCCCceeEEEe-----ecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccc
Q 043172 406 QLLSSGGDGQVYHWDLRTRTCIHRAV-----DEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIEN 480 (564)
Q Consensus 406 ~l~s~s~dg~V~lwD~~~~~~~~~~~-----~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~ 480 (564)
.+++.+.||.+.+||. +++.+.... .....-.....+.+++..++..+..+.|.+.|+... ....+..+..
T Consensus 179 ~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~---~~~v~~~~~~ 254 (373)
T 2mad_H 179 TFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAA---GATNKAPIDA 254 (373)
T ss_pred eEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCC---cceEeeeeee
Confidence 5666778999999999 877663322 111111123455666655555557889999998653 1112222211
Q ss_pred ----------cccceeEEEEcCCCcEEEEEecC--------CCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCC
Q 043172 481 ----------LTTKVDFMKFNNDAQILAICSTM--------KKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGG 542 (564)
Q Consensus 481 ----------~~~~I~~l~fspdg~~La~~s~~--------~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~ 542 (564)
.......++++|++..|+++... ..+.|.++|+.+++++..++.. +...+++|+|||+
T Consensus 255 ~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g----~~p~~i~~s~Dg~ 330 (373)
T 2mad_H 255 LSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG----HDVDAISVAQDGG 330 (373)
T ss_pred cCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC----CCcCeEEECCCCC
Confidence 11223447899999988886531 1368999999999998888654 3578999999999
Q ss_pred -EEEEEc-CCCeEEEEEcCCCC
Q 043172 543 -FMAVGN-AAGKVFLYKLNHYH 562 (564)
Q Consensus 543 -~Lasgs-~dG~V~lw~l~~~~ 562 (564)
+|++++ .++.|.+||+.+++
T Consensus 331 ~~l~v~~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 331 PDLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred eEEEEEcCCCCeEEEEECCCCC
Confidence 788887 58999999998765
No 186
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.71 E-value=3e-15 Score=167.39 Aligned_cols=242 Identities=11% Similarity=0.048 Sum_probs=169.4
Q ss_pred cCeEEEEEeeCCCEEEEEeCCC-----eEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCe-------
Q 043172 307 CPVRKASFLPDGSQAIIAGRRK-----FFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGY------- 374 (564)
Q Consensus 307 ~~I~~l~fspdg~~l~s~~~dg-----~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~------- 374 (564)
..+..++|||||++|+.+..++ .|++||+.+++..... +... .+..++|+|||+.|++++.++.
T Consensus 125 ~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~-~~~~---~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV-LERV---KFSCMAWTHDGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE-EEEE---CSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred EEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccc-ccCc---ccceEEEEeCCCEEEEEEECCcccccccc
Confidence 4578899999999999876433 8999999999875431 2111 2557999999999999887765
Q ss_pred ---------EEEEECCCCcE--EEEee---ecCcEEEEEEecCCCEEEEEeC-----CCeEEEEECCC------Cc-eeE
Q 043172 375 ---------ILLVSSKTKEL--IGTLK---MNGTVRSLAFADDGKQLLSSGG-----DGQVYHWDLRT------RT-CIH 428 (564)
Q Consensus 375 ---------I~lwd~~t~~~--~~~~~---~~~~V~~l~~spdg~~l~s~s~-----dg~V~lwD~~~------~~-~~~ 428 (564)
|++|++.+++. ...+. +...+..+.|+|+|++|+.++. +..|++||+.+ +. ...
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 280 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV 280 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence 99999988762 22222 3456889999999999988764 56899999986 43 344
Q ss_pred EEeecCCcceEEEEECCCCCEEEEEeCC----CcEEEEeCCcccCCcceeeEEcccccc--ceeEEEEcCCCcEEEEEec
Q 043172 429 RAVDEGCINGTALCTSPDGTFFAAGSDS----GIVNVYNRQEFLGGKRKPIKTIENLTT--KVDFMKFNNDAQILAICST 502 (564)
Q Consensus 429 ~~~~~~~~~i~~l~~sp~g~~lasgs~d----g~V~iwd~~~~~~~~~~~~~~~~~~~~--~I~~l~fspdg~~La~~s~ 502 (564)
.+..+.. .+.. .|+|+|..|+..+.. +.|.+|++... .......+..+.. .+..++|++++.+++++..
T Consensus 281 ~l~~~~~-~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~ 355 (710)
T 2xdw_A 281 KLIDNFE-GEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDP---EESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLH 355 (710)
T ss_dssp EEECSSS-SCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSC---CGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEE
T ss_pred EeeCCCC-cEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCC---CcccceeccCCCCCCeEEEEEEEcCCEEEEEEEE
Confidence 4443332 2233 578899988777653 36999998764 1112234433433 6888999988888888777
Q ss_pred CCCC--eEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEE----cCCCeEEEEEcCCCC
Q 043172 503 MKKN--SLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVG----NAAGKVFLYKLNHYH 562 (564)
Q Consensus 503 ~~d~--~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasg----s~dG~V~lw~l~~~~ 562 (564)
++ .|++|++.+++....+... .+.|..++++|++..|+.. ...+.|++|++.+.+
T Consensus 356 --~g~~~l~~~~~~~g~~~~~l~~~---~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 356 --DVKNTLQLHDLATGALLKIFPLE---VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp --TTEEEEEEEETTTCCEEEEECCC---SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred --CCEEEEEEEECCCCCEEEecCCC---CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 55 4666777667655544332 4678899999999866633 245789999987643
No 187
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.70 E-value=3.3e-15 Score=151.28 Aligned_cols=220 Identities=15% Similarity=0.111 Sum_probs=155.9
Q ss_pred CeEEEEEeeCCCEEEEEe---------CCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCC---C--
Q 043172 308 PVRKASFLPDGSQAIIAG---------RRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNE---G-- 373 (564)
Q Consensus 308 ~I~~l~fspdg~~l~s~~---------~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d---g-- 373 (564)
.+..++| +|++|+... .++.|++|++.+++...+ ..+..++|||+|++|++++.+ +
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l--------~~~~~~~~SpDg~~la~~~~~~~~~~~ 85 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI--------ENATMPRISPDGKKIAFMRANEEKKVS 85 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE--------ESCEEEEECTTSSEEEEEEEETTTTEE
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc--------ccCCCeEECCCCCEEEEEEeccCCCcc
Confidence 4556667 888887653 256799999998876443 257889999999999987753 2
Q ss_pred eEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEEeCC---------------------------CeEEEEECCCCce
Q 043172 374 YILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSGGD---------------------------GQVYHWDLRTRTC 426 (564)
Q Consensus 374 ~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s~d---------------------------g~V~lwD~~~~~~ 426 (564)
.|.+|++.+++......+.. +.+++|+|+|+.|+.++.+ ..|++||+.+++.
T Consensus 86 ~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 164 (347)
T 2gop_A 86 EIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEV 164 (347)
T ss_dssp EEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEE
T ss_pred eEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeE
Confidence 48888998888766665555 9999999999988887632 5799999998876
Q ss_pred eEEEeecCCcceEEEEECCCCCEEEEEeCCC-------cEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEE
Q 043172 427 IHRAVDEGCINGTALCTSPDGTFFAAGSDSG-------IVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAI 499 (564)
Q Consensus 427 ~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg-------~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~ 499 (564)
+..+.. . .+..++|+|+| ++++++.++ ...||.+..+ . +..+..+ ..+..+ +|+|++|++
T Consensus 165 ~~~l~~--~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~-----~-~~~l~~~-~~~~~~--spdg~~l~~ 231 (347)
T 2gop_A 165 IEEFEK--P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDG-----K-EEKMFEK-VSFYAV--DSDGERILL 231 (347)
T ss_dssp EEEEEE--E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETT-----E-EEEEEEE-ESEEEE--EECSSCEEE
T ss_pred EeeecC--C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCC-----c-eEEeccC-cceeeE--CCCCCEEEE
Confidence 455544 2 56789999999 777776542 3445544432 2 2333333 444444 999999988
Q ss_pred EecCC------CCeEEEEEcCCCceeccCCCCCCCCCCcEE-EEEeCCCCEEEEEcCCCeEEEEEcC
Q 043172 500 CSTMK------KNSLKLIHIPSYNVFSNWPPANRNLQYPRC-LDFSPGGGFMAVGNAAGKVFLYKLN 559 (564)
Q Consensus 500 ~s~~~------d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~-l~fspdg~~Lasgs~dG~V~lw~l~ 559 (564)
++... ...|.+|+ ++......+ .+...+.. +.|+ +| ++++++.+|.++|| +.
T Consensus 232 ~~~~~~~~~~~~~~l~~~d--~~~~~~l~~---~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~ 290 (347)
T 2gop_A 232 YGKPEKKYMSEHNKLYIYD--GKEVMGILD---EVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IW 290 (347)
T ss_dssp EECCSSSCCCSSCEEEEEC--SSCEEESST---TCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EE
T ss_pred EEccccCCccccceEEEEC--CCceEeccc---cCCcccCCccEEc-Cc-EEEEEecCCcEEEE-Ec
Confidence 87532 24688887 554433222 23356775 8999 88 88999999999999 86
No 188
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.69 E-value=3.1e-13 Score=133.24 Aligned_cols=280 Identities=9% Similarity=0.013 Sum_probs=193.1
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCce
Q 043172 261 STGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKA 340 (564)
Q Consensus 261 h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~ 340 (564)
....+.+|++.++|.++++...++.|.+|+.. .... ...+......+.++++.++|+.+++...++.|..||.. ++.
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~ 94 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIK-EFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF 94 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceE-EEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe
Confidence 34678999999999988887778999999876 2211 11122233578899999999877766667889999988 655
Q ss_pred eeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE-ee-ecCcEEEEEEecCCCEEEEEeCCCeEEE
Q 043172 341 DKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGT-LK-MNGTVRSLAFADDGKQLLSSGGDGQVYH 418 (564)
Q Consensus 341 ~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~-~~-~~~~V~~l~~spdg~~l~s~s~dg~V~l 418 (564)
... .+.... ..+..+++.++|+++++...++.|..|+.. ++.... +. ....+.++++.++++++++...++.|..
T Consensus 95 ~~~-~~~~~~-~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~ 171 (300)
T 2qc5_A 95 TEY-PLPQPD-SGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGR 171 (300)
T ss_dssp EEE-ECSSTT-CCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred EEe-cCCCCC-CCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEE
Confidence 322 222122 358899999999888777667899999987 655432 22 3457899999999996666666789999
Q ss_pred EECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEE
Q 043172 419 WDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILA 498 (564)
Q Consensus 419 wD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La 498 (564)
||. +++............+..++++++|.++++....+.|.+|+.... .....+......+.++++.++|++.+
T Consensus 172 ~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~-----~~~~~~~~~~~~~~~i~~d~~g~l~v 245 (300)
T 2qc5_A 172 ITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGE-----ISEYDIPTPNARPHAITAGKNSEIWF 245 (300)
T ss_dssp ECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCC-----EEEEECSSTTCCEEEEEECSTTCEEE
T ss_pred ECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCCc-----EEEEECCCCCCCceEEEECCCCCEEE
Confidence 998 555543222223345789999999987777777788999998321 11122333456688999999998666
Q ss_pred EEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q 043172 499 ICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLN 559 (564)
Q Consensus 499 ~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~ 559 (564)
+... ++.|..|+. ++... .+... .....+.+++++++|.++++.. . .|..++..
T Consensus 246 ~~~~--~~~i~~~~~-~g~~~-~~~~~-~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 246 TEWG--ANQIGRITN-DNTIQ-EYQLQ-TENAEPHGITFGKDGSVWFALK-C-KIGKLNLN 299 (300)
T ss_dssp EETT--TTEEEEECT-TSCEE-EEECC-STTCCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred eccC--CCeEEEECC-CCcEE-EEECC-ccCCccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence 5544 689999998 44432 22111 1235688999999998666554 4 67777653
No 189
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.68 E-value=9e-15 Score=149.12 Aligned_cols=281 Identities=11% Similarity=0.021 Sum_probs=195.7
Q ss_pred EEEcCCCCEEEEEeC-----CCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEe----------CCCeEEE
Q 043172 268 VQFHRNAQLLLVAGL-----DRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAG----------RRKFFYS 332 (564)
Q Consensus 268 l~fspdg~~l~s~s~-----dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~----------~dg~i~i 332 (564)
....|++..++++.. ++.|.++|.. +...+..+.....+ . ++++|+|++++++. .++.|.+
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~--t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~Vsv 113 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGE--AGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEV 113 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETT--TTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECC--CCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEE
Confidence 345688888888765 5678888776 56677888776666 4 99999999998875 3578999
Q ss_pred EECCCCceeeeccccc-c---CCcceEEEEEcCCCCEEEEEeC--CCeEEEEECCCCcEEEEeeecCcEEEEEEecCCCE
Q 043172 333 LDLVKAKADKIGPLVG-R---EEKSLEFFEVSPDSSVIAFVGN--EGYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQ 406 (564)
Q Consensus 333 wdl~~~~~~~~~~~~~-~---~~~~v~~~~~spdg~~la~~~~--dg~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~ 406 (564)
||..+++......+.. . .......+.|+|+|++++++.. ++.|.++|+.+++.+.++...+. ...+....+.
T Consensus 114 iD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~--~~~~P~g~~~ 191 (386)
T 3sjl_D 114 FDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC--YHIFPTAPDT 191 (386)
T ss_dssp ECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTE
T ss_pred EECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc--ceeecCCCce
Confidence 9999998765433322 0 0113456999999999998864 68999999999999999875442 2233334567
Q ss_pred EEEEeCCCeEEEEECCC-CceeEEEee---cCCcce-EEEEEC-CCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEcc-
Q 043172 407 LLSSGGDGQVYHWDLRT-RTCIHRAVD---EGCING-TALCTS-PDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIE- 479 (564)
Q Consensus 407 l~s~s~dg~V~lwD~~~-~~~~~~~~~---~~~~~i-~~l~~s-p~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~- 479 (564)
+++.+.||.+.+.++.. ++....... .....+ ....|. ++|++++ .+.+|.|+++|+... ..+.+..+.
T Consensus 192 ~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~---~~~v~~~~~~ 267 (386)
T 3sjl_D 192 FFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSG---DAKFLPAVEA 267 (386)
T ss_dssp EEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTS---SCEECCCEES
T ss_pred eEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCC---cceeecceec
Confidence 77888899999999876 554322111 111111 123553 6775544 666899999999764 112222221
Q ss_pred ---------ccccceeEEEEcCCCcEEEEEecC--------CCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCC
Q 043172 480 ---------NLTTKVDFMKFNNDAQILAICSTM--------KKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGG 542 (564)
Q Consensus 480 ---------~~~~~I~~l~fspdg~~La~~s~~--------~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~ 542 (564)
-....+..++++++++.|+++... ..+.|.++|+.+++++..++.. ..+++|+|+||++
T Consensus 268 ~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg----~~~~~lavs~D~~ 343 (386)
T 3sjl_D 268 LTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG----HEIDSINVSQDEK 343 (386)
T ss_dssp SCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE----EEECEEEECSSSS
T ss_pred cccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC----CCcceEEECCCCC
Confidence 012344558889999999887531 1257999999999999988765 3578999999997
Q ss_pred -EEEEEc-CCCeEEEEEcCCCC
Q 043172 543 -FMAVGN-AAGKVFLYKLNHYH 562 (564)
Q Consensus 543 -~Lasgs-~dG~V~lw~l~~~~ 562 (564)
+|++++ .++.|.++|..+++
T Consensus 344 ~~ly~tn~~~~~VsViD~~t~k 365 (386)
T 3sjl_D 344 PLLYALSTGDKTLYIHDAESGE 365 (386)
T ss_dssp CEEEEEETTTTEEEEEETTTCC
T ss_pred eEEEEEcCCCCeEEEEECCCCc
Confidence 676655 58999999998765
No 190
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.68 E-value=3.9e-15 Score=166.02 Aligned_cols=275 Identities=11% Similarity=-0.017 Sum_probs=175.9
Q ss_pred CCCCEEEEEeCCC---cEEEEEecCCCCceeEEEE------eCCcCeEEEEEeeCCCEEEEEe-----CCCeEEEEECCC
Q 043172 272 RNAQLLLVAGLDR---RLRFFQIDGKRNTKIQSIF------LEDCPVRKASFLPDGSQAIIAG-----RRKFFYSLDLVK 337 (564)
Q Consensus 272 pdg~~l~s~s~dg---~I~lwd~~~~~~~~~~~~~------~~~~~I~~l~fspdg~~l~s~~-----~dg~i~iwdl~~ 337 (564)
|+|.+++....++ .-.||..+.........+. .|...+..++|||||++|+.+. .+..|++||+.+
T Consensus 77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t 156 (695)
T 2bkl_A 77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS 156 (695)
T ss_dssp EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCC
Confidence 5677766655443 3455655422222222221 2344688999999999998553 346899999999
Q ss_pred CceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCe-------------EEEEECCCCcE--EEEee---ecCcEEEEE
Q 043172 338 AKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGY-------------ILLVSSKTKEL--IGTLK---MNGTVRSLA 399 (564)
Q Consensus 338 ~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~-------------I~lwd~~t~~~--~~~~~---~~~~V~~l~ 399 (564)
++......+... ....++|+|||+.|++++.+.. |++|++.+++. ...+. +...+.++.
T Consensus 157 g~~~~~~~~~~~---~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~ 233 (695)
T 2bkl_A 157 GEWSKVDVIEGG---KYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSD 233 (695)
T ss_dssp CCBCSSCCBSCC---TTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEE
T ss_pred CCCcCCcccCcc---cccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEE
Confidence 986311112111 1257899999999999988765 99999998762 22222 345789999
Q ss_pred EecCCCEEEEEeCCC----eEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeC----CCcEEEEeCCcccCCc
Q 043172 400 FADDGKQLLSSGGDG----QVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSD----SGIVNVYNRQEFLGGK 471 (564)
Q Consensus 400 ~spdg~~l~s~s~dg----~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~----dg~V~iwd~~~~~~~~ 471 (564)
|+|+|++|++++.++ .|++|+..++... .+..... .+....+ ++|. |+..+. ++.|.+|++.++ .
T Consensus 234 ~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~~-~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~--~- 306 (695)
T 2bkl_A 234 LSRDGKYLFVYILRGWSENDVYWKRPGEKDFR-LLVKGVG-AKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKP--A- 306 (695)
T ss_dssp ECTTSCCEEEEEEETTTEEEEEEECTTCSSCE-EEEECSS-CCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBC--S-
T ss_pred ECCCCCEEEEEEeCCCCceEEEEEcCCCCceE-EeecCCC-ceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCC--C-
Confidence 999999998877665 7888877655433 3333332 3345555 5666 444443 578999998764 1
Q ss_pred ceeeEEc-ccc-ccceeEEEEcCCCcEEEEEecCCCCeEEEEEcC-CCceeccCCCCCCCCCCcEEEEEeCCCCEEEEE-
Q 043172 472 RKPIKTI-ENL-TTKVDFMKFNNDAQILAICSTMKKNSLKLIHIP-SYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVG- 547 (564)
Q Consensus 472 ~~~~~~~-~~~-~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~-s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasg- 547 (564)
......+ ..+ ...+..++|+ ++.++++... ++..+||.+. ++.....+... ..+.|..++++|++..|+..
T Consensus 307 ~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~--dg~~~l~~~~~~g~~~~~l~~~--~~~~v~~~~~s~d~~~l~~~~ 381 (695)
T 2bkl_A 307 RASWKEIVPEDSSASLLSVSIV-GGHLSLEYLK--DATSEVRVATLKGKPVRTVQLP--GVGAASNLMGLEDLDDAYYVF 381 (695)
T ss_dssp GGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEE--TTEEEEEEEETTCCEEEECCCS--SSSEECCCBSCTTCSEEEEEE
T ss_pred ccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEE--CCEEEEEEEeCCCCeeEEecCC--CCeEEEEeecCCCCCEEEEEE
Confidence 1012233 222 4567888888 6777777777 7887877664 34444433321 13567788899999877733
Q ss_pred ---cCCCeEEEEEcCCC
Q 043172 548 ---NAAGKVFLYKLNHY 561 (564)
Q Consensus 548 ---s~dG~V~lw~l~~~ 561 (564)
...+.|++|++.+.
T Consensus 382 ss~~~P~~v~~~d~~~g 398 (695)
T 2bkl_A 382 TSFTTPRQIYKTSVSTG 398 (695)
T ss_dssp EETTEEEEEEEEETTTC
T ss_pred cCCCCCCEEEEEECCCC
Confidence 34578999998764
No 191
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.68 E-value=3.5e-14 Score=140.77 Aligned_cols=242 Identities=11% Similarity=0.058 Sum_probs=169.1
Q ss_pred eeEEEEeCCcCeEEEEEeeCCC-EEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEE
Q 043172 298 KIQSIFLEDCPVRKASFLPDGS-QAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYIL 376 (564)
Q Consensus 298 ~~~~~~~~~~~I~~l~fspdg~-~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~ 376 (564)
.+..+..+.....+++|+|+|+ .++++..++.|+.|+..++ .... ..+. ..+.+++++|+|+++++...++.|.
T Consensus 19 ~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~---~~~~-~~~~~l~~~~dg~l~v~~~~~~~i~ 93 (296)
T 3e5z_A 19 EARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPE---MHPS-HHQNGHCLNKQGHLIACSHGLRRLE 93 (296)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEE---ESSC-SSEEEEEECTTCCEEEEETTTTEEE
T ss_pred cEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEE---ECCC-CCcceeeECCCCcEEEEecCCCeEE
Confidence 4445555556678999999998 5666678899999999987 4322 2222 3588999999999887776678999
Q ss_pred EEECCCCcEEEEeee-----cCcEEEEEEecCCCEEEEE----e-------------CCCeEEEEECCCCceeEEEeecC
Q 043172 377 LVSSKTKELIGTLKM-----NGTVRSLAFADDGKQLLSS----G-------------GDGQVYHWDLRTRTCIHRAVDEG 434 (564)
Q Consensus 377 lwd~~t~~~~~~~~~-----~~~V~~l~~spdg~~l~s~----s-------------~dg~V~lwD~~~~~~~~~~~~~~ 434 (564)
+||..+++....... ...+.+++++|+|+++++. + ..+.|+.++.. ++. ..+.. +
T Consensus 94 ~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~-~ 170 (296)
T 3e5z_A 94 RQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIR-D 170 (296)
T ss_dssp EECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEEC-C
T ss_pred EEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeec-C
Confidence 999988876544331 2346789999999988763 2 13467777765 443 33332 2
Q ss_pred CcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcc-eeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEc
Q 043172 435 CINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKR-KPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHI 513 (564)
Q Consensus 435 ~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~-~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl 513 (564)
......++|+|+|+++++.+.++.|.+|++... +.. .....+..+...+.+++++++|+++++. ++.|.+|+.
T Consensus 171 ~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~--g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~----~~~v~~~~~ 244 (296)
T 3e5z_A 171 RVKPNGLAFLPSGNLLVSDTGDNATHRYCLNAR--GETEYQGVHFTVEPGKTDGLRVDAGGLIWASA----GDGVHVLTP 244 (296)
T ss_dssp CSSEEEEEECTTSCEEEEETTTTEEEEEEECSS--SCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE----TTEEEEECT
T ss_pred CCCCccEEECCCCCEEEEeCCCCeEEEEEECCC--CcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc----CCeEEEECC
Confidence 334678999999998877788899999998721 111 1122223345567889999999876655 478999998
Q ss_pred CCCceeccCCCCCCCCCCcEEEEE-eCCCCEEEEEcCCCeEEEEEcC
Q 043172 514 PSYNVFSNWPPANRNLQYPRCLDF-SPGGGFMAVGNAAGKVFLYKLN 559 (564)
Q Consensus 514 ~s~~~~~~~~~~~~~~~~V~~l~f-spdg~~Lasgs~dG~V~lw~l~ 559 (564)
. ++.+..+... .. +++++| +|+++.|++++.+| +..+++.
T Consensus 245 ~-g~~~~~~~~~---~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~ 285 (296)
T 3e5z_A 245 D-GDELGRVLTP---QT-TSNLCFGGPEGRTLYMTVSTE-FWSIETN 285 (296)
T ss_dssp T-SCEEEEEECS---SC-CCEEEEESTTSCEEEEEETTE-EEEEECS
T ss_pred C-CCEEEEEECC---CC-ceeEEEECCCCCEEEEEcCCe-EEEEEcc
Confidence 6 6666555433 24 889999 58999999888764 4444443
No 192
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.67 E-value=5.1e-14 Score=142.15 Aligned_cols=256 Identities=13% Similarity=0.131 Sum_probs=177.8
Q ss_pred CCcEEEEEecCCCCceeEEEE------eCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEE
Q 043172 283 DRRLRFFQIDGKRNTKIQSIF------LEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEF 356 (564)
Q Consensus 283 dg~I~lwd~~~~~~~~~~~~~------~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~ 356 (564)
+++|.+||..+.+ ....+. ........+++. .++.+++...++.|.+||..+++.... +... .....
T Consensus 16 ~~~l~~~d~~t~~--~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~--i~~~--~~p~~ 88 (328)
T 3dsm_A 16 NATLSYYDPATCE--VENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGR--ITGF--TSPRY 88 (328)
T ss_dssp CBEEEEEETTTTE--EECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEE--EECC--SSEEE
T ss_pred CceEEEEECCCCE--EhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEE--cCCC--CCCcE
Confidence 7899999887432 222111 011235667774 344444445678999999999987543 2222 25788
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeeecC------cEEEEEEecCCCEEEEEe--CCCeEEEEECCCCceeE
Q 043172 357 FEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLKMNG------TVRSLAFADDGKQLLSSG--GDGQVYHWDLRTRTCIH 428 (564)
Q Consensus 357 ~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~~~~------~V~~l~~spdg~~l~s~s--~dg~V~lwD~~~~~~~~ 428 (564)
+++++++..+++...++.|.+||+.+++....+.... ....+++ . +..|+++. .++.|.+||+.+++.+.
T Consensus 89 i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~ 166 (328)
T 3dsm_A 89 IHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVD 166 (328)
T ss_dssp EEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEE
T ss_pred EEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEE
Confidence 9999998544444378999999999999888777444 5677888 3 44555554 48899999999998887
Q ss_pred EEeecCCcceEEEEECCCCCEEEEEeCC----------CcEEEEeCCcccCCcceeeEEcccc-ccceeEEEEcCCCcEE
Q 043172 429 RAVDEGCINGTALCTSPDGTFFAAGSDS----------GIVNVYNRQEFLGGKRKPIKTIENL-TTKVDFMKFNNDAQIL 497 (564)
Q Consensus 429 ~~~~~~~~~i~~l~~sp~g~~lasgs~d----------g~V~iwd~~~~~~~~~~~~~~~~~~-~~~I~~l~fspdg~~L 497 (564)
.+.... ....++++|+|++++++..+ +.|.+||..+. +....+... ......++|+|++++|
T Consensus 167 ~i~~g~--~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~-----~v~~~~~~~~g~~p~~la~~~d~~~l 239 (328)
T 3dsm_A 167 ELTIGI--QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF-----TVEKQFKFKLGDWPSEVQLNGTRDTL 239 (328)
T ss_dssp EEECSS--CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT-----EEEEEEECCTTCCCEEEEECTTSCEE
T ss_pred EEEcCC--CccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC-----eEEEEEecCCCCCceeEEEecCCCEE
Confidence 776432 34678899999877766554 78999999876 555555422 2468899999999999
Q ss_pred EEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCC-CCEEEEE----cCCCeEEEEEcC
Q 043172 498 AICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPG-GGFMAVG----NAAGKVFLYKLN 559 (564)
Q Consensus 498 a~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspd-g~~Lasg----s~dG~V~lw~l~ 559 (564)
+++.. .|.+||+.+++.... +........+.+++++|+ +.++++. ..+|.|.+|+..
T Consensus 240 yv~~~----~v~~~d~~t~~~~~~-~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 240 YWINN----DIWRMPVEADRVPVR-PFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp EEESS----SEEEEETTCSSCCSS-CSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred EEEcc----EEEEEECCCCceeee-eeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 88653 899999988776421 111111356889999995 5555554 568899999976
No 193
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.66 E-value=4.6e-14 Score=142.49 Aligned_cols=248 Identities=11% Similarity=-0.003 Sum_probs=175.0
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEe-CCCeEEEEECCCCce
Q 043172 262 TGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAG-RRKFFYSLDLVKAKA 340 (564)
Q Consensus 262 ~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~-~dg~i~iwdl~~~~~ 340 (564)
......+++. .+.++++...++.|.+||..+ ...+..+. .......+++++++ .++++. .++.|.+||+.+++.
T Consensus 43 g~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t--~~~~~~i~-~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~ 117 (328)
T 3dsm_A 43 GDVAQSMVIR-DGIGWIVVNNSHVIFAIDINT--FKEVGRIT-GFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEI 117 (328)
T ss_dssp BSCEEEEEEE-TTEEEEEEGGGTEEEEEETTT--CCEEEEEE-CCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEE
T ss_pred CccceEEEEE-CCEEEEEEcCCCEEEEEECcc--cEEEEEcC-CCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeE
Confidence 3457888885 345566666689999998874 44666664 34567899999998 565555 789999999999887
Q ss_pred eeecccccc--CCcceEEEEEcCCCCEEEEEe--CCCeEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEEeCC---
Q 043172 341 DKIGPLVGR--EEKSLEFFEVSPDSSVIAFVG--NEGYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSGGD--- 413 (564)
Q Consensus 341 ~~~~~~~~~--~~~~v~~~~~spdg~~la~~~--~dg~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s~d--- 413 (564)
.....+... .......+++ ++..|+++. .++.|.+||+.+++.+..+........++++|+|++++++..+
T Consensus 118 ~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~ 195 (328)
T 3dsm_A 118 TGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEG 195 (328)
T ss_dssp EEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTT
T ss_pred EEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccC
Confidence 543332220 0012345666 345555554 4789999999999998888765667889999999877766554
Q ss_pred -------CeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeE--Eccccccc
Q 043172 414 -------GQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIK--TIENLTTK 484 (564)
Q Consensus 414 -------g~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~--~~~~~~~~ 484 (564)
+.|++||..+++....+..........++++|++++|+++.. .|.+||..+. +... .+......
T Consensus 196 ~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~-----~~~~~~~~~~~~~~ 268 (328)
T 3dsm_A 196 SPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEAD-----RVPVRPFLEFRDTK 268 (328)
T ss_dssp CSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCS-----SCCSSCSBCCCSSC
T ss_pred CccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCC-----ceeeeeeecCCCCc
Confidence 789999999998877765433335689999999998888765 8999999875 2211 11212456
Q ss_pred eeEEEEcCCCcEEEEEe----cCCCCeEEEEEcCCCceeccCCCC
Q 043172 485 VDFMKFNNDAQILAICS----TMKKNSLKLIHIPSYNVFSNWPPA 525 (564)
Q Consensus 485 I~~l~fspdg~~La~~s----~~~d~~I~lwdl~s~~~~~~~~~~ 525 (564)
...++++|++..|+++. .. ++.|.+|+.. ++.+..++..
T Consensus 269 p~gi~vdp~~g~lyva~~~~y~~-~~~V~v~d~~-g~~~~~i~~G 311 (328)
T 3dsm_A 269 YYGLTVNPNNGEVYVADAIDYQQ-QGIVYRYSPQ-GKLIDEFYVG 311 (328)
T ss_dssp EEEEEECTTTCCEEEEECTTSSS-EEEEEEECTT-CCEEEEEEEE
T ss_pred eEEEEEcCCCCeEEEEccccccc-CCEEEEECCC-CCEEEEEEec
Confidence 88999999555555444 21 7899999998 8777766543
No 194
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.66 E-value=3.7e-15 Score=166.24 Aligned_cols=260 Identities=12% Similarity=0.045 Sum_probs=175.6
Q ss_pred eeeecccC-CCCCCCCeeEEEEcCCCCEEEEE-----eCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEE
Q 043172 250 SRLIDANA-DESSTGPINSVQFHRNAQLLLVA-----GLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAII 323 (564)
Q Consensus 250 ~rl~~~~~-~~~h~~~V~~l~fspdg~~l~s~-----s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s 323 (564)
.++.+.+. ..+|...+.+++|||||++||.+ +.+.+|++|++.++.......+ .......++|+|||+.|++
T Consensus 107 ~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~--~~~~~~~~~wspDg~~l~~ 184 (695)
T 2bkl_A 107 KVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVI--EGGKYATPKWTPDSKGFYY 184 (695)
T ss_dssp EEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCB--SCCTTCCCEECTTSSEEEE
T ss_pred EEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCccc--CcccccceEEecCCCEEEE
Confidence 34455443 34677789999999999999844 3346899999986542201111 1112267899999999999
Q ss_pred EeCCCe-------------EEEEECCCCcee--eeccccccCCcceEEEEEcCCCCEEEEEeCCC----eEEEEECCCCc
Q 043172 324 AGRRKF-------------FYSLDLVKAKAD--KIGPLVGREEKSLEFFEVSPDSSVIAFVGNEG----YILLVSSKTKE 384 (564)
Q Consensus 324 ~~~dg~-------------i~iwdl~~~~~~--~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg----~I~lwd~~t~~ 384 (564)
++.+.. |++|++.++... .+.....+. ..+..+.|||+|++|++++.++ .|++|+..+++
T Consensus 185 ~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~ 263 (695)
T 2bkl_A 185 EWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDP-TTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD 263 (695)
T ss_dssp EECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCT-TCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS
T ss_pred EEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCC-EEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc
Confidence 987665 999999988632 222222222 2578899999999998887665 78888776666
Q ss_pred EEEEeeecCcEEEEEEecCCCEEEEEe---CCCeEEEEECCCCce--eEEEeecC-CcceEEEEECCCCCEEEEEeCCCc
Q 043172 385 LIGTLKMNGTVRSLAFADDGKQLLSSG---GDGQVYHWDLRTRTC--IHRAVDEG-CINGTALCTSPDGTFFAAGSDSGI 458 (564)
Q Consensus 385 ~~~~~~~~~~V~~l~~spdg~~l~s~s---~dg~V~lwD~~~~~~--~~~~~~~~-~~~i~~l~~sp~g~~lasgs~dg~ 458 (564)
......+...+....| ++|.+++++. .++.|++||+.++.. ...+..+. ...+..++++ ++.++++...++.
T Consensus 264 ~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~ 341 (695)
T 2bkl_A 264 FRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDAT 341 (695)
T ss_dssp CEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTE
T ss_pred eEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCE
Confidence 5555555556666666 5666444433 258999999987653 23333332 4456778887 6778888889998
Q ss_pred EEEEeCCcccCCcceeeEEcccc-ccceeEEEEcCCCcEEEEEe--cCCCCeEEEEEcCCCce
Q 043172 459 VNVYNRQEFLGGKRKPIKTIENL-TTKVDFMKFNNDAQILAICS--TMKKNSLKLIHIPSYNV 518 (564)
Q Consensus 459 V~iwd~~~~~~~~~~~~~~~~~~-~~~I~~l~fspdg~~La~~s--~~~d~~I~lwdl~s~~~ 518 (564)
.+||.+... ...+..+..+ ...+..++++|++..|++.. ....++|++|++.+++.
T Consensus 342 ~~l~~~~~~----g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 342 SEVRVATLK----GKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEEEEETT----CCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEEEEeCC----CCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 888866521 1344555544 56788889999998776433 22247899999987653
No 195
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.65 E-value=3.6e-14 Score=138.19 Aligned_cols=239 Identities=10% Similarity=0.026 Sum_probs=166.0
Q ss_pred CeEEEEEeeCCCEEE-EEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE
Q 043172 308 PVRKASFLPDGSQAI-IAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELI 386 (564)
Q Consensus 308 ~I~~l~fspdg~~l~-s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~ 386 (564)
...+++++++|+.++ +...++.|.+|+..+...... .. . ....+.+++++++|+++++.. ++.|.+|+..+....
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~-~~-~-~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~ 100 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL-PF-N-GLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT 100 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EEC-CC-C-SCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceE-ee-C-CcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe
Confidence 567899999998666 436778999999876553221 11 1 112467899999998666555 889999998766543
Q ss_pred EEee-ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 043172 387 GTLK-MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQ 465 (564)
Q Consensus 387 ~~~~-~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~ 465 (564)
.... ....+.++++.|+|+++++...++.|++|+..+...... .......+..++++++|+++++...++.|.+|+..
T Consensus 101 ~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~-~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~ 179 (270)
T 1rwi_B 101 VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL-PFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAE 179 (270)
T ss_dssp ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC-CCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTT
T ss_pred eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee-ccccCCCceeEEEeCCCCEEEEECCCCEEEEEecC
Confidence 2211 235789999999999777777788999998765443322 11222245789999999977777778899999987
Q ss_pred cccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEE
Q 043172 466 EFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMA 545 (564)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~La 545 (564)
.. ............+.+|+++++|.++++... ++.|.+|+........ .+ ..+...+.+++++|+|.+++
T Consensus 180 ~~-----~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~--~~~v~~~~~~~~~~~~-~~--~~~~~~p~~i~~~~~g~l~v 249 (270)
T 1rwi_B 180 SN-----NQVVLPFTDITAPWGIAVDEAGTVYVTEHN--TNQVVKLLAGSTTSTV-LP--FTGLNTPLAVAVDSDRTVYV 249 (270)
T ss_dssp TC-----CEEECCCSSCCSEEEEEECTTCCEEEEETT--TSCEEEECTTCSCCEE-CC--CCSCSCEEEEEECTTCCEEE
T ss_pred CC-----ceEeecccCCCCceEEEECCCCCEEEEECC--CCcEEEEcCCCCccee-ec--cCCCCCceeEEECCCCCEEE
Confidence 64 222222223367889999999976666555 7889999987654332 11 12235689999999999888
Q ss_pred EEcCCCeEEEEEcCCC
Q 043172 546 VGNAAGKVFLYKLNHY 561 (564)
Q Consensus 546 sgs~dG~V~lw~l~~~ 561 (564)
+...+++|++|++..-
T Consensus 250 ~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 250 ADRGNDRVVKLTSLEH 265 (270)
T ss_dssp EEGGGTEEEEECCCGG
T ss_pred EECCCCEEEEEcCCCc
Confidence 8889999999998643
No 196
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.65 E-value=3.2e-14 Score=138.55 Aligned_cols=239 Identities=7% Similarity=-0.012 Sum_probs=167.7
Q ss_pred CeeEEEEcCCCCEEE-EEeCCCcEEEEEecCCCCceeEEE-EeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCcee
Q 043172 264 PINSVQFHRNAQLLL-VAGLDRRLRFFQIDGKRNTKIQSI-FLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKAD 341 (564)
Q Consensus 264 ~V~~l~fspdg~~l~-s~s~dg~I~lwd~~~~~~~~~~~~-~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~ 341 (564)
...+++++|+|.+++ +.+.++.|.+|+..+.. ...+ ..+...+.+++++++|+.+++.. ++.|++|+..+....
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~ 100 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTG---TTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT 100 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC--------EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcc---cceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe
Confidence 788999999999777 44678899999865432 1111 12334678899999998555544 889999998876543
Q ss_pred eeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEeCCCeEEEEE
Q 043172 342 KIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQVYHWD 420 (564)
Q Consensus 342 ~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~V~lwD 420 (564)
.. .......+..++++|+|+++++...++.|.+|+..+........ ....+.+++++++|+++++...++.|++||
T Consensus 101 ~~---~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~ 177 (270)
T 1rwi_B 101 VL---PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLE 177 (270)
T ss_dssp EC---CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEEC
T ss_pred ee---ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEe
Confidence 22 11121357899999999977777778899999876654433222 234678999999999777666678999999
Q ss_pred CCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEE
Q 043172 421 LRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAIC 500 (564)
Q Consensus 421 ~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~ 500 (564)
......... ...+...+..++++++|.++++...++.|.+|+.... ........+...+.+++++++|+++++.
T Consensus 178 ~~~~~~~~~-~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~-----~~~~~~~~~~~~p~~i~~~~~g~l~v~~ 251 (270)
T 1rwi_B 178 AESNNQVVL-PFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST-----TSTVLPFTGLNTPLAVAVDSDRTVYVAD 251 (270)
T ss_dssp TTTCCEEEC-CCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCS-----CCEECCCCSCSCEEEEEECTTCCEEEEE
T ss_pred cCCCceEee-cccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCC-----cceeeccCCCCCceeEEECCCCCEEEEE
Confidence 887654332 2222245789999999987777777889999998753 2222222233568899999999877776
Q ss_pred ecCCCCeEEEEEcCCCc
Q 043172 501 STMKKNSLKLIHIPSYN 517 (564)
Q Consensus 501 s~~~d~~I~lwdl~s~~ 517 (564)
+. ++.|+++++....
T Consensus 252 ~~--~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 252 RG--NDRVVKLTSLEHH 266 (270)
T ss_dssp GG--GTEEEEECCCGGG
T ss_pred CC--CCEEEEEcCCCcc
Confidence 66 8999999987544
No 197
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.64 E-value=5.6e-14 Score=145.73 Aligned_cols=277 Identities=9% Similarity=-0.019 Sum_probs=193.5
Q ss_pred CCCCEEEEEeCC-----CcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEe----------CCCeEEEEECC
Q 043172 272 RNAQLLLVAGLD-----RRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAG----------RRKFFYSLDLV 336 (564)
Q Consensus 272 pdg~~l~s~s~d-----g~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~----------~dg~i~iwdl~ 336 (564)
|++..++++... +.|.++|.. +...+..+.....| .++++|+|++|+++. .++.|.++|..
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~--t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~ 157 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGS--TGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPV 157 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETT--TTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECC--CCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECC
Confidence 456656555442 688998876 56678888877666 899999999998886 36789999999
Q ss_pred CCceeeeccccccC----CcceEEEEEcCCCCEEEEEeC--CCeEEEEECCCCcEEEEeeecCcEEEEEEecCC-CEEEE
Q 043172 337 KAKADKIGPLVGRE----EKSLEFFEVSPDSSVIAFVGN--EGYILLVSSKTKELIGTLKMNGTVRSLAFADDG-KQLLS 409 (564)
Q Consensus 337 ~~~~~~~~~~~~~~----~~~v~~~~~spdg~~la~~~~--dg~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg-~~l~s 409 (564)
+++......+.+.. ......+.|+|+|++++++.. .+.|.++|+.+++.+..+...+. ....|++ +.+++
T Consensus 158 t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~---~~~~p~g~~~~v~ 234 (426)
T 3c75_H 158 TFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC---YHIFPASPTVFYM 234 (426)
T ss_dssp TCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEE
T ss_pred CCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc---eeeccCCCcEEEE
Confidence 99876544332110 112346899999999999874 57899999999999988875442 2334433 56667
Q ss_pred EeCCCeEEEEECCCCceeEEE----eecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEcc------
Q 043172 410 SGGDGQVYHWDLRTRTCIHRA----VDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIE------ 479 (564)
Q Consensus 410 ~s~dg~V~lwD~~~~~~~~~~----~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~------ 479 (564)
.+.||.+.+.++.+++..... ..........+.+++++..++..+..|.|.+.|+.... ...+..+.
T Consensus 235 ~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~---~~v~~~~~~~~~~~ 311 (426)
T 3c75_H 235 NCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEG---ATFRAPIEALTEAE 311 (426)
T ss_dssp EETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSC---EEECCCEESSCTTT
T ss_pred EcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCc---eEEeeeeeeccccc
Confidence 778888888888655554321 11111111245678998887777888999999986530 01111111
Q ss_pred ----ccccceeEEEEcCCCcEEEEEecC--------CCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCC-EEEE
Q 043172 480 ----NLTTKVDFMKFNNDAQILAICSTM--------KKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGG-FMAV 546 (564)
Q Consensus 480 ----~~~~~I~~l~fspdg~~La~~s~~--------~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~-~Las 546 (564)
........++|+|++..|+++... ..+.|.++|+.+.+++..++.. ....++.|+|+|+ +|++
T Consensus 312 i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg----~~P~gia~spDg~~~lyv 387 (426)
T 3c75_H 312 RADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG----HEIDSINVSQDAEPLLYA 387 (426)
T ss_dssp GGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE----EEECEEEECCSSSCEEEE
T ss_pred cccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC----CCcCeEEEccCCCEEEEE
Confidence 011222347899999888776531 1357999999999999988754 3478999999999 8888
Q ss_pred Ec-CCCeEEEEEcCCCC
Q 043172 547 GN-AAGKVFLYKLNHYH 562 (564)
Q Consensus 547 gs-~dG~V~lw~l~~~~ 562 (564)
++ .++.|.++|+.+++
T Consensus 388 ~n~~s~~VsVID~~t~k 404 (426)
T 3c75_H 388 LSAGTQTLHIYDAATGE 404 (426)
T ss_dssp EETTTTEEEEEETTTCC
T ss_pred EcCCCCeEEEEECCCCC
Confidence 88 58999999998875
No 198
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.63 E-value=4.1e-13 Score=133.60 Aligned_cols=241 Identities=11% Similarity=0.074 Sum_probs=168.9
Q ss_pred CCeeEEEEcCCCCEEEE-------EeCCCcEEEEEecCCCCceeEEEEe-----CCcCeEEEEEeeC-CCEEEEEeCCCe
Q 043172 263 GPINSVQFHRNAQLLLV-------AGLDRRLRFFQIDGKRNTKIQSIFL-----EDCPVRKASFLPD-GSQAIIAGRRKF 329 (564)
Q Consensus 263 ~~V~~l~fspdg~~l~s-------~s~dg~I~lwd~~~~~~~~~~~~~~-----~~~~I~~l~fspd-g~~l~s~~~dg~ 329 (564)
....+++|++++.++++ +..++.|.+|+..... ...+.. +...+.+++++++ |+ |++++....
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~---~~~~~~~~~~~~~~~~~~i~~~~~~g~-l~v~~~~~~ 93 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGK---KTVICKPEVNGYGGIPAGCQCDRDANQ-LFVADMRLG 93 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCC---EEEEECCEETTEECCEEEEEECSSSSE-EEEEETTTE
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCc---EEEEEecccCCCCCCCceEEEecCCCc-EEEEECCCC
Confidence 35689999999988887 5678899999875433 222222 3356889999999 65 444454557
Q ss_pred EEEEECCCCceeee-cccc-ccCCcceEEEEEcCCCCEEEEEeCC---------------CeEEEEECCCCcEEEEeeec
Q 043172 330 FYSLDLVKAKADKI-GPLV-GREEKSLEFFEVSPDSSVIAFVGNE---------------GYILLVSSKTKELIGTLKMN 392 (564)
Q Consensus 330 i~iwdl~~~~~~~~-~~~~-~~~~~~v~~~~~spdg~~la~~~~d---------------g~I~lwd~~t~~~~~~~~~~ 392 (564)
|.+|+.. ++...+ .... +.....+..++++++|+++++...+ +.|..|+.. ++......+.
T Consensus 94 l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~ 171 (314)
T 1pjx_A 94 LLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAF 171 (314)
T ss_dssp EEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEE
T ss_pred EEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCC
Confidence 9999998 765443 2211 1122357899999999887776554 678888876 6655444455
Q ss_pred CcEEEEEEe----cCCCEEEEE-eCCCeEEEEECC-CCcee--EEEee--cCC-cceEEEEECCCCCEEEEEeCCCcEEE
Q 043172 393 GTVRSLAFA----DDGKQLLSS-GGDGQVYHWDLR-TRTCI--HRAVD--EGC-INGTALCTSPDGTFFAAGSDSGIVNV 461 (564)
Q Consensus 393 ~~V~~l~~s----pdg~~l~s~-s~dg~V~lwD~~-~~~~~--~~~~~--~~~-~~i~~l~~sp~g~~lasgs~dg~V~i 461 (564)
.....++|+ |+++.|+++ ..++.|++|++. .+... ..+.. .+. .....++++++|+++++...++.|.+
T Consensus 172 ~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~ 251 (314)
T 1pjx_A 172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEV 251 (314)
T ss_dssp SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred CCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEE
Confidence 567899999 999766655 457899999986 44321 11111 111 34678999999998888778889999
Q ss_pred EeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCC
Q 043172 462 YNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPS 515 (564)
Q Consensus 462 wd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s 515 (564)
|+..++ +.+..+..+...+.+++|+|+|+.|++++.. ++.|..|++..
T Consensus 252 ~d~~~g-----~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~-~~~l~~~~~~~ 299 (314)
T 1pjx_A 252 FGPDGG-----QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHE-NNAVWKFEWQR 299 (314)
T ss_dssp ECTTCB-----SCSEEEECSSSCEEEEEECTTSSEEEEEETT-TTEEEEEECSS
T ss_pred EcCCCC-----cEeEEEeCCCCCceeEEECCCCCEEEEEeCC-CCeEEEEeCCC
Confidence 998754 4555555555789999999999977766643 67899999865
No 199
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.63 E-value=1.3e-13 Score=135.61 Aligned_cols=216 Identities=7% Similarity=0.033 Sum_probs=167.6
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeeec--Cc
Q 043172 317 DGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLKMN--GT 394 (564)
Q Consensus 317 dg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~~~--~~ 394 (564)
.++.|++++.++.|++||..+|+.... +..+....+.++.++|+|++++ +.++.|..||. +++.+..+... ..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~--~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~ 78 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWE--YPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCE 78 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEE--EECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEE--eCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcc
Confidence 357888888999999999999987543 3333212467899999999888 35688999998 89999888843 57
Q ss_pred EEEEEEecCCCEEEEEeC-CCeEEEEECCCCceeEEEeecCC-----cceEEEEECCCCCEEEEEeCCCcEEEEeCCccc
Q 043172 395 VRSLAFADDGKQLLSSGG-DGQVYHWDLRTRTCIHRAVDEGC-----INGTALCTSPDGTFFAAGSDSGIVNVYNRQEFL 468 (564)
Q Consensus 395 V~~l~~spdg~~l~s~s~-dg~V~lwD~~~~~~~~~~~~~~~-----~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~ 468 (564)
+.++.+.|+|++|++.+. ++.|..+|. +++.+..+..... .....+++.++|+++++.+.++.|.+||.. +
T Consensus 79 ~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G- 155 (276)
T 3no2_A 79 MQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-G- 155 (276)
T ss_dssp EEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-S-
T ss_pred ccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-C-
Confidence 889999999999999887 888988886 6777777653221 123456788999999999999999999988 6
Q ss_pred CCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCC---CCCCCCcEEEEEeCCCCEEE
Q 043172 469 GGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPA---NRNLQYPRCLDFSPGGGFMA 545 (564)
Q Consensus 469 ~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~---~~~~~~V~~l~fspdg~~La 545 (564)
+.+.++... ..+.++.+.++|+++++++. ++.|..++..+++.+-.+... ......+.+++..++|.+++
T Consensus 156 ----~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~--~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v 228 (276)
T 3no2_A 156 ----QLLNSVKLS-GTPFSSAFLDNGDCLVACGD--AHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYI 228 (276)
T ss_dssp ----CEEEEEECS-SCCCEEEECTTSCEEEECBT--TSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEE
T ss_pred ----CEEEEEECC-CCccceeEcCCCCEEEEeCC--CCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEE
Confidence 777777643 45667888999999988877 678999999988886655422 11234578889999999887
Q ss_pred EE
Q 043172 546 VG 547 (564)
Q Consensus 546 sg 547 (564)
+.
T Consensus 229 ~~ 230 (276)
T 3no2_A 229 CN 230 (276)
T ss_dssp EE
T ss_pred Ee
Confidence 76
No 200
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.62 E-value=2.7e-13 Score=133.34 Aligned_cols=247 Identities=11% Similarity=0.043 Sum_probs=180.6
Q ss_pred CCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCC-cCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCC
Q 043172 273 NAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLED-CPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREE 351 (564)
Q Consensus 273 dg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~-~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~ 351 (564)
.+++|++++.++.|.+||.. +...+..+..+. ..+++++++|+|+.|+ +.++.|+.||. +++.... +.....
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~--tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~--~~~~~~ 76 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKD--TKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWN--IAAPAG 76 (276)
T ss_dssp CCEEEEECTTCSEEEEEETT--TTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEE--EECCTT
T ss_pred CCcEEEeeCCCCEEEEEECC--CCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEE--EcCCCC
Confidence 35789999999999999875 445677777655 4688999999999888 45778999999 6775433 332222
Q ss_pred cceEEEEEcCCCCEEEEEeC-CCeEEEEECCCCcEEEEeeec-------CcEEEEEEecCCCEEEEEeCCCeEEEEECCC
Q 043172 352 KSLEFFEVSPDSSVIAFVGN-EGYILLVSSKTKELIGTLKMN-------GTVRSLAFADDGKQLLSSGGDGQVYHWDLRT 423 (564)
Q Consensus 352 ~~v~~~~~spdg~~la~~~~-dg~I~lwd~~t~~~~~~~~~~-------~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~ 423 (564)
..+.++.+.|+|+++++.+. .+.|..++. +++.+..+... .....+++.++|++|++.+.++.|.+||..
T Consensus 77 ~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~- 154 (276)
T 3no2_A 77 CEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN- 154 (276)
T ss_dssp CEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-
T ss_pred ccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-
Confidence 35788999999999999887 788988885 78877776521 234566789999999999999999999998
Q ss_pred CceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccc------cceeEEEEcCCCcEE
Q 043172 424 RTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLT------TKVDFMKFNNDAQIL 497 (564)
Q Consensus 424 ~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~------~~I~~l~fspdg~~L 497 (564)
++.+.++.... ...++.+.++|+++++++.++.|..+|..++ +.+..+.... ..+..++..++|.++
T Consensus 155 G~~~w~~~~~~--~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG-----~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~ 227 (276)
T 3no2_A 155 GQLLNSVKLSG--TPFSSAFLDNGDCLVACGDAHCFVQLNLESN-----RIVRRVNANDIEGVQLFFVAQLFPLQNGGLY 227 (276)
T ss_dssp SCEEEEEECSS--CCCEEEECTTSCEEEECBTTSEEEEECTTTC-----CEEEEEEGGGSBSCCCSEEEEEEECTTSCEE
T ss_pred CCEEEEEECCC--CccceeEcCCCCEEEEeCCCCeEEEEeCcCC-----cEEEEecCCCCCCccccccccceEcCCCCEE
Confidence 99888876543 3456778899999999988889999999877 7777765321 337888899999988
Q ss_pred EEEecCCC------CeEEEEEc-CCCceeccCCCCCCCCCCcEEEE
Q 043172 498 AICSTMKK------NSLKLIHI-PSYNVFSNWPPANRNLQYPRCLD 536 (564)
Q Consensus 498 a~~s~~~d------~~I~lwdl-~s~~~~~~~~~~~~~~~~V~~l~ 536 (564)
++.+.... +..+++.+ ++++++-.+.... ..+.+.+++
T Consensus 228 v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~-~~~~~~~~~ 272 (276)
T 3no2_A 228 ICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKV-KFGMISTIC 272 (276)
T ss_dssp EEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTT-TSCCCCEEE
T ss_pred EEeccCccccccccCCceEEEECCCCCEEEEecCcc-cccceeeee
Confidence 88753211 23456666 4566554443322 224455543
No 201
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.61 E-value=9.2e-14 Score=156.08 Aligned_cols=275 Identities=7% Similarity=-0.027 Sum_probs=175.0
Q ss_pred CCCCEEEEEeCCCc---EEEEEecCC---CCceeEEE------EeCCcCeEEEEEeeCCCEEEEEeCC-----CeEEEEE
Q 043172 272 RNAQLLLVAGLDRR---LRFFQIDGK---RNTKIQSI------FLEDCPVRKASFLPDGSQAIIAGRR-----KFFYSLD 334 (564)
Q Consensus 272 pdg~~l~s~s~dg~---I~lwd~~~~---~~~~~~~~------~~~~~~I~~l~fspdg~~l~s~~~d-----g~i~iwd 334 (564)
|+|.+++....++. -.||..+.. .......+ ..+...+..++|||||++|++++.+ ..|++||
T Consensus 116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d 195 (741)
T 1yr2_A 116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVG 195 (741)
T ss_dssp EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence 77777766654432 556665422 11111111 1123467889999999999987643 4699999
Q ss_pred CCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCC--------------eEEEEECCCCcE--EEEee---ecCcE
Q 043172 335 LVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEG--------------YILLVSSKTKEL--IGTLK---MNGTV 395 (564)
Q Consensus 335 l~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg--------------~I~lwd~~t~~~--~~~~~---~~~~V 395 (564)
+.+++.... .+... .+..++|+|| +.|++++.++ .|++|++.+++. ...+. +...+
T Consensus 196 l~tg~~~~~-~~~~~---~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~ 270 (741)
T 1yr2_A 196 VADGKPLAD-ELKWV---KFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRG 270 (741)
T ss_dssp TTTCCEEEE-EEEEE---ESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCE
T ss_pred CCCCCCCCc-cCCCc---eeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEE
Confidence 999987442 11110 1246899999 9998887654 399999987762 22232 22358
Q ss_pred EEEEEecCCCEEEEEeCCC-----eEEEEECCCC--ceeEEEeecCCcceEEEEECCCCCEEEEEeCC----CcEEEEeC
Q 043172 396 RSLAFADDGKQLLSSGGDG-----QVYHWDLRTR--TCIHRAVDEGCINGTALCTSPDGTFFAAGSDS----GIVNVYNR 464 (564)
Q Consensus 396 ~~l~~spdg~~l~s~s~dg-----~V~lwD~~~~--~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~d----g~V~iwd~ 464 (564)
.++.|+|||++|+..+.++ .|++||+.++ .+...+..... ..... ++|+|+.|+..+.. +.|.+|++
T Consensus 271 ~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~-~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~ 348 (741)
T 1yr2_A 271 HGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLK-AQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDL 348 (741)
T ss_dssp EEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSS-SCEEE-EEEETTEEEEEECTTCTTCEEEEEEC
T ss_pred EEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCC-ceEEE-EeccCCEEEEEECCCCCCCEEEEEeC
Confidence 8999999999988877543 8999999876 31344443332 23333 34889988887763 45999998
Q ss_pred CcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcC-CCceeccCCCCCCCCCCcEEEEEeCCCCE
Q 043172 465 QEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIP-SYNVFSNWPPANRNLQYPRCLDFSPGGGF 543 (564)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~-s~~~~~~~~~~~~~~~~V~~l~fspdg~~ 543 (564)
... . ......+..+...+..+.|+ ++.++++... ++..+||.+. ++.....+... ..+.|..++++|++..
T Consensus 349 ~~~--~-~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~--dg~~~l~~~~~~g~~~~~l~~~--~~~~v~~~~~s~d~~~ 420 (741)
T 1yr2_A 349 SGS--T-PRFDTVVPESKDNLESVGIA-GNRLFASYIH--DAKSQVLAFDLDGKPAGAVSLP--GIGSASGLSGRPGDRH 420 (741)
T ss_dssp SSS--S-CEEEEEECCCSSEEEEEEEE-BTEEEEEEEE--TTEEEEEEEETTSCEEEECBCS--SSCEEEEEECCBTCSC
T ss_pred CCC--c-cccEEEecCCCCeEEEEEEE-CCEEEEEEEE--CCEEEEEEEeCCCCceeeccCC--CCeEEEEeecCCCCCE
Confidence 763 1 12233334445567778887 5667777776 7777777554 34444433221 2366889999999886
Q ss_pred EEEE----cCCCeEEEEEcCCC
Q 043172 544 MAVG----NAAGKVFLYKLNHY 561 (564)
Q Consensus 544 Lasg----s~dG~V~lw~l~~~ 561 (564)
|+.. ...+.|++|++.+.
T Consensus 421 l~~~~ss~~~P~~i~~~d~~tg 442 (741)
T 1yr2_A 421 AYLSFSSFTQPATVLALDPATA 442 (741)
T ss_dssp EEEEEEETTEEEEEEEEETTTT
T ss_pred EEEEEcCCCCCCEEEEEECCCC
Confidence 6632 34578999998653
No 202
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.60 E-value=1.8e-13 Score=153.75 Aligned_cols=256 Identities=13% Similarity=0.080 Sum_probs=168.8
Q ss_pred eeecccC-CCCCCCCeeEEEEcCCCCEEEEEeCC-----CcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEE
Q 043172 251 RLIDANA-DESSTGPINSVQFHRNAQLLLVAGLD-----RRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIA 324 (564)
Q Consensus 251 rl~~~~~-~~~h~~~V~~l~fspdg~~l~s~s~d-----g~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~ 324 (564)
.+.+.+. ..+|...+.+++|||||++||.++.+ .+|++|++.++.. +. ...+...+..++|+|| +.|+.+
T Consensus 150 ~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~--~~-~~~~~~~~~~~~wspD-~~l~~~ 225 (741)
T 1yr2_A 150 VLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKP--LA-DELKWVKFSGLAWLGN-DALLYS 225 (741)
T ss_dssp EEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCE--EE-EEEEEEESCCCEESTT-SEEEEE
T ss_pred EEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCC--CC-ccCCCceeccEEEECC-CEEEEE
Confidence 4444443 23455678999999999999887653 3699999986542 22 1222222457899999 999988
Q ss_pred eCCC--------------eEEEEECCCCcee--eeccccccCCcceEEEEEcCCCCEEEEEeCCC-----eEEEEECCCC
Q 043172 325 GRRK--------------FFYSLDLVKAKAD--KIGPLVGREEKSLEFFEVSPDSSVIAFVGNEG-----YILLVSSKTK 383 (564)
Q Consensus 325 ~~dg--------------~i~iwdl~~~~~~--~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg-----~I~lwd~~t~ 383 (564)
+.++ .|++|++.++... .+.....+. ..+..+.|||+|++|++.+.++ .|++||+.++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~ 304 (741)
T 1yr2_A 226 RFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELP-KRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNG 304 (741)
T ss_dssp ECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCT-TCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETT
T ss_pred EecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCC-eEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCC
Confidence 7654 3899999877632 222222221 2478899999999998877543 8999999877
Q ss_pred --c-EEEEeeecCcEEEEEEecCCCEEEEEeC----CCeEEEEECCCC-ceeEEEeecCCcceEEEEECCCCCEEEEEeC
Q 043172 384 --E-LIGTLKMNGTVRSLAFADDGKQLLSSGG----DGQVYHWDLRTR-TCIHRAVDEGCINGTALCTSPDGTFFAAGSD 455 (564)
Q Consensus 384 --~-~~~~~~~~~~V~~l~~spdg~~l~s~s~----dg~V~lwD~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~ 455 (564)
+ ......+...+... ++|+|..|+..+. ++.|++||+.++ .....+..+....+..++++ ++.++++...
T Consensus 305 ~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~ 382 (741)
T 1yr2_A 305 KIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIH 382 (741)
T ss_dssp EECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEE
T ss_pred CCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEE
Confidence 4 33333344444444 3488888888765 456999999875 23334444443345667777 5667788888
Q ss_pred CCcEEEEeCCc-ccCCcceeeEEccc-cccceeEEEEcCCCcEEEEE--ecCCCCeEEEEEcCCCce
Q 043172 456 SGIVNVYNRQE-FLGGKRKPIKTIEN-LTTKVDFMKFNNDAQILAIC--STMKKNSLKLIHIPSYNV 518 (564)
Q Consensus 456 dg~V~iwd~~~-~~~~~~~~~~~~~~-~~~~I~~l~fspdg~~La~~--s~~~d~~I~lwdl~s~~~ 518 (564)
+|..+||.+.. + ..+..+.. ....+..+.++|++..|+.. +....++|++|++.+++.
T Consensus 383 dg~~~l~~~~~~g-----~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 383 DAKSQVLAFDLDG-----KPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp TTEEEEEEEETTS-----CEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred CCEEEEEEEeCCC-----CceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 98877776542 2 34455543 35678899999998866643 333357899999988763
No 203
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.59 E-value=3.1e-12 Score=125.87 Aligned_cols=237 Identities=10% Similarity=0.036 Sum_probs=170.5
Q ss_pred CCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 043172 305 EDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKE 384 (564)
Q Consensus 305 ~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~ 384 (564)
+...+.++++.++|+.+++...++.|.+|+.. +...... .... ...+..++++++|.++++...++.|..|+.. ++
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~-~~~~-~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~ 88 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYP-LPTP-DAKVMCLTISSDGEVWFTENAANKIGRITKK-GI 88 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEE-CSST-TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEec-CCcc-cCceeeEEECCCCCEEEeCCCCCeEEEECCC-Cc
Confidence 34578999999999877766667899999988 6554322 1212 2368899999999988877668899999986 44
Q ss_pred EEEEee---ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEE
Q 043172 385 LIGTLK---MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNV 461 (564)
Q Consensus 385 ~~~~~~---~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~i 461 (564)
. ..+. ....+.++++.++|+++++...++.|.+||. ++.............+..++++++|+++++....+.|.+
T Consensus 89 ~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~ 166 (299)
T 2z2n_A 89 I-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGR 166 (299)
T ss_dssp E-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred E-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEE
Confidence 3 2232 3457899999999987777777889999998 555443322223345789999999988877777889999
Q ss_pred EeCCcccCCcceeeE-EccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCC
Q 043172 462 YNRQEFLGGKRKPIK-TIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPG 540 (564)
Q Consensus 462 wd~~~~~~~~~~~~~-~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspd 540 (564)
|+. .+ +... .+......+.++++.++|.++++... .+.|.+|+. ++.... +.. ..+...+.+++++++
T Consensus 167 ~~~-~g-----~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~--~~~i~~~~~-~g~~~~-~~~-~~~~~~~~~i~~~~~ 235 (299)
T 2z2n_A 167 ITE-SG-----DITEFKIPTPASGPVGITKGNDDALWFVEII--GNKIGRITT-SGEITE-FKI-PTPNARPHAITAGAG 235 (299)
T ss_dssp ECT-TC-----CEEEEECSSTTCCEEEEEECTTSSEEEEETT--TTEEEEECT-TCCEEE-EEC-SSTTCCEEEEEECST
T ss_pred EcC-CC-----cEEEeeCCCCCCcceeEEECCCCCEEEEccC--CceEEEECC-CCcEEE-EEC-CCCCCCceeEEECCC
Confidence 998 43 2222 23334456889999999987666554 689999998 665432 211 123467899999999
Q ss_pred CCEEEEEcCCCeEEEEEc
Q 043172 541 GGFMAVGNAAGKVFLYKL 558 (564)
Q Consensus 541 g~~Lasgs~dG~V~lw~l 558 (564)
|.++++...++.|.+|+.
T Consensus 236 g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 236 IDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp TCEEEEETTTTEEEEEET
T ss_pred CCEEEeccCCceEEEECC
Confidence 997776667788999986
No 204
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.58 E-value=1.6e-12 Score=129.32 Aligned_cols=247 Identities=13% Similarity=0.085 Sum_probs=167.3
Q ss_pred EeCCcCeEEEEEeeCCCEEEE-------EeCCCeEEEEECCCCceeeeccc--cccCCcceEEEEEcCC-CCEEEEEeCC
Q 043172 303 FLEDCPVRKASFLPDGSQAII-------AGRRKFFYSLDLVKAKADKIGPL--VGREEKSLEFFEVSPD-SSVIAFVGNE 372 (564)
Q Consensus 303 ~~~~~~I~~l~fspdg~~l~s-------~~~dg~i~iwdl~~~~~~~~~~~--~~~~~~~v~~~~~spd-g~~la~~~~d 372 (564)
...-....+++|+++|..+++ ...++.|++|+..+++...+... .++. ..+.+++++++ |+++++ +..
T Consensus 14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~-~~~~~i~~~~~~g~l~v~-~~~ 91 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYG-GIPAGCQCDRDANQLFVA-DMR 91 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEE-CCEEEEEECSSSSEEEEE-ETT
T ss_pred hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCC-CCCceEEEecCCCcEEEE-ECC
Confidence 333445689999999987777 46678999999988876443210 0121 35889999999 665544 444
Q ss_pred CeEEEEECCCCcEEEE-ee-----ecCcEEEEEEecCCCEEEEEeCC---------------CeEEEEECCCCceeEEEe
Q 043172 373 GYILLVSSKTKELIGT-LK-----MNGTVRSLAFADDGKQLLSSGGD---------------GQVYHWDLRTRTCIHRAV 431 (564)
Q Consensus 373 g~I~lwd~~t~~~~~~-~~-----~~~~V~~l~~spdg~~l~s~s~d---------------g~V~lwD~~~~~~~~~~~ 431 (564)
+.|.+|+.. ++.... .. ....+.+++++++|+++++...+ +.|+.|+.. ++......
T Consensus 92 ~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~ 169 (314)
T 1pjx_A 92 LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT 169 (314)
T ss_dssp TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE
T ss_pred CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc
Confidence 579999988 766443 22 12358899999999877776654 578888876 55433322
Q ss_pred ecCCcceEEEEEC----CCCCEEEEE-eCCCcEEEEeCC-cccCCcceeeEEccccc-cceeEEEEcCCCcEEEEEecCC
Q 043172 432 DEGCINGTALCTS----PDGTFFAAG-SDSGIVNVYNRQ-EFLGGKRKPIKTIENLT-TKVDFMKFNNDAQILAICSTMK 504 (564)
Q Consensus 432 ~~~~~~i~~l~~s----p~g~~lasg-s~dg~V~iwd~~-~~~~~~~~~~~~~~~~~-~~I~~l~fspdg~~La~~s~~~ 504 (564)
.. .....++++ |+++.|+++ +.++.|.+|+.. .+.......+..+..+. ..+..++++++|+++++...
T Consensus 170 ~~--~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~-- 245 (314)
T 1pjx_A 170 AF--QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG-- 245 (314)
T ss_dssp EE--SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET--
T ss_pred CC--CCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcC--
Confidence 21 234788999 999765544 567899999976 22000111333344343 56788999999988887766
Q ss_pred CCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEE-EEcCCCeEEEEEcCC
Q 043172 505 KNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMA-VGNAAGKVFLYKLNH 560 (564)
Q Consensus 505 d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~La-sgs~dG~V~lw~l~~ 560 (564)
++.|.+|+..+++....+.. +...+.+++|+|+|++|+ +...++.|..|++..
T Consensus 246 ~~~i~~~d~~~g~~~~~~~~---~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 246 SSHIEVFGPDGGQPKMRIRC---PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TTEEEEECTTCBSCSEEEEC---SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCEEEEEcCCCCcEeEEEeC---CCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 78999999886665544332 236789999999999555 445668899999864
No 205
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.56 E-value=1.1e-11 Score=127.31 Aligned_cols=237 Identities=10% Similarity=-0.020 Sum_probs=164.9
Q ss_pred EEEEcCCCCEEEEEe----------CCCcEEEEEecCCCCceeEEEEeC-------CcCeEEEEEeeCCCEEEEEeC--C
Q 043172 267 SVQFHRNAQLLLVAG----------LDRRLRFFQIDGKRNTKIQSIFLE-------DCPVRKASFLPDGSQAIIAGR--R 327 (564)
Q Consensus 267 ~l~fspdg~~l~s~s----------~dg~I~lwd~~~~~~~~~~~~~~~-------~~~I~~l~fspdg~~l~s~~~--d 327 (564)
.++|||||++|+++. .++.|.+||.. +...+..+... ......++|+|+|++|+++.. .
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~--t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~ 147 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV--TFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAG 147 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC--CCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCC
Confidence 999999999999886 36789999886 34455555432 123458999999999999874 4
Q ss_pred CeEEEEECCCCceeee-ccccccCCcceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEEEEee------ecCc-EEEE
Q 043172 328 KFFYSLDLVKAKADKI-GPLVGREEKSLEFFEVSPDS-SVIAFVGNEGYILLVSSKTKELIGTLK------MNGT-VRSL 398 (564)
Q Consensus 328 g~i~iwdl~~~~~~~~-~~~~~~~~~~v~~~~~spdg-~~la~~~~dg~I~lwd~~t~~~~~~~~------~~~~-V~~l 398 (564)
+.|.++| .+++.... ..+.+ ++.+.|++ +.+++.+.+|.+.+++. +++.+.... ...+ ....
T Consensus 148 ~~v~viD-~t~~~~~~~i~~~~-------~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~ 218 (373)
T 2mad_H 148 PAVGLVV-QGGSSDDQLLSSPT-------CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQP 218 (373)
T ss_pred CeEEEEE-CCCCEEeEEcCCCc-------eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecc
Confidence 7899999 99887543 33221 24455655 45556677899999999 887764322 1112 1335
Q ss_pred EEecCCCEEEEEeCCCeEEEEECCCCc--eeEEEeec---------CCcceEEEEECCCCCEEEEEeC----------CC
Q 043172 399 AFADDGKQLLSSGGDGQVYHWDLRTRT--CIHRAVDE---------GCINGTALCTSPDGTFFAAGSD----------SG 457 (564)
Q Consensus 399 ~~spdg~~l~s~s~dg~V~lwD~~~~~--~~~~~~~~---------~~~~i~~l~~sp~g~~lasgs~----------dg 457 (564)
.+.+++..++..+..+.|++.|+.... .+..+... .......++++|+++.++++.. .+
T Consensus 219 ~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~ 298 (373)
T 2mad_H 219 AQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAK 298 (373)
T ss_pred eeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCC
Confidence 667766665555678899999997553 22222211 0112334788999887777643 35
Q ss_pred cEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCc-EEEEEecCCCCeEEEEEcCCCceecc
Q 043172 458 IVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQ-ILAICSTMKKNSLKLIHIPSYNVFSN 521 (564)
Q Consensus 458 ~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~-~La~~s~~~d~~I~lwdl~s~~~~~~ 521 (564)
.|.++|..+. +.+.++. ......+++|+|||+ +|+++.. .++.|.+||+.++++...
T Consensus 299 ~V~VID~~t~-----~vv~~i~-~g~~p~~i~~s~Dg~~~l~v~~~-~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 299 EVTSVTGLVG-----QTSSQIS-LGHDVDAISVAQDGGPDLYALSA-GTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred eEEEEECCCC-----EEEEEEE-CCCCcCeEEECCCCCeEEEEEcC-CCCeEEEEECCCCCEEee
Confidence 7999999987 7778875 344689999999999 6666553 279999999999998876
No 206
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.55 E-value=4.6e-13 Score=136.52 Aligned_cols=254 Identities=13% Similarity=0.049 Sum_probs=175.1
Q ss_pred EEEEcCCCCEEEEEe----------CCCcEEEEEecCCCCceeEEEEeCC-------cCeEEEEEeeCCCEEEEEeC--C
Q 043172 267 SVQFHRNAQLLLVAG----------LDRRLRFFQIDGKRNTKIQSIFLED-------CPVRKASFLPDGSQAIIAGR--R 327 (564)
Q Consensus 267 ~l~fspdg~~l~s~s----------~dg~I~lwd~~~~~~~~~~~~~~~~-------~~I~~l~fspdg~~l~s~~~--d 327 (564)
.++++|+|++|++++ .++.|.+||.. +...+..+.... .....++|+|||++|+++.. +
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~--t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~ 159 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV--TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPA 159 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT--TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSS
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECC--CCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCC
Confidence 399999999888875 36789999887 455666665432 24567999999999998874 6
Q ss_pred CeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCC-CcEEEEee-e----cCcEE-EEEE
Q 043172 328 KFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKT-KELIGTLK-M----NGTVR-SLAF 400 (564)
Q Consensus 328 g~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t-~~~~~~~~-~----~~~V~-~l~~ 400 (564)
+.|.++|+.+++......+.+. ...+....+.+++.+.||.+.++++.+ ++...... + ..++. ...|
T Consensus 160 ~~VsVID~~t~~vv~tI~v~g~------~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~ 233 (386)
T 3sjl_D 160 PAVGVVDLEGKAFKRMLDVPDC------YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAY 233 (386)
T ss_dssp CEEEEEETTTTEEEEEEECCSE------EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEE
T ss_pred CeEEEEECCCCcEEEEEECCCc------ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceecccccccccccee
Confidence 8999999999988665444331 122333445666777788888888875 55433221 1 12221 2466
Q ss_pred e-cCCCEEEEEeCCCeEEEEECCCCc--eeEEEee-------c--CCcceEEEEECCCCCEEEEEeC----------CCc
Q 043172 401 A-DDGKQLLSSGGDGQVYHWDLRTRT--CIHRAVD-------E--GCINGTALCTSPDGTFFAAGSD----------SGI 458 (564)
Q Consensus 401 s-pdg~~l~s~s~dg~V~lwD~~~~~--~~~~~~~-------~--~~~~i~~l~~sp~g~~lasgs~----------dg~ 458 (564)
. ++|++++ .+.+|.|++.|+.+.. .+..+.. . .......++++++++.+++... ...
T Consensus 234 ~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~ 312 (386)
T 3sjl_D 234 SQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRF 312 (386)
T ss_dssp ETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEE
T ss_pred EcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCE
Confidence 5 5776554 5668999999997654 3333320 0 0112234777899887776542 247
Q ss_pred EEEEeCCcccCCcceeeEEccccccceeEEEEcCCCc-EEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEE
Q 043172 459 VNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQ-ILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDF 537 (564)
Q Consensus 459 V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~-~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~f 537 (564)
|.++|+.+. +.+.++.- ...+.+|+|++|++ +|+++... ++.|.++|..+++.+..++.. +..+.|.+
T Consensus 313 V~viD~~t~-----kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~~-~~~VsViD~~t~k~~~~i~~~----~~p~~l~~ 381 (386)
T 3sjl_D 313 VVVLDAKTG-----ERLAKFEM-GHEIDSINVSQDEKPLLYALSTG-DKTLYIHDAESGEELRSVNQL----GHGPQVIT 381 (386)
T ss_dssp EEEEETTTC-----CEEEEEEE-EEEECEEEECSSSSCEEEEEETT-TTEEEEEETTTCCEEEEECCC----CSSCCEEE
T ss_pred EEEEECCCC-----eEEEEEEC-CCCcceEEECCCCCeEEEEEcCC-CCeEEEEECCCCcEEEEecCC----CCCceeEE
Confidence 999999987 77777763 45788999999997 66665543 799999999999999988776 44566778
Q ss_pred eCC
Q 043172 538 SPG 540 (564)
Q Consensus 538 spd 540 (564)
++|
T Consensus 382 s~d 384 (386)
T 3sjl_D 382 TAD 384 (386)
T ss_dssp ECC
T ss_pred CCc
Confidence 776
No 207
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.53 E-value=8.7e-12 Score=123.74 Aligned_cols=230 Identities=14% Similarity=0.124 Sum_probs=160.6
Q ss_pred CCCCeeEEEEcCCC-CEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCc
Q 043172 261 STGPINSVQFHRNA-QLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAK 339 (564)
Q Consensus 261 h~~~V~~l~fspdg-~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~ 339 (564)
+..-..+..|+|++ .++++....+.|..|+..+.. ...+. ....+.+++|+|+|+++++ . +..|++||..+++
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~---~~~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~ 84 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQ---VQRVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQS 84 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCC---EEEEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTE
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCc---EEEEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCc
Confidence 33456789999954 456666678899999987543 22332 4567899999999995544 4 5679999999887
Q ss_pred eeeecccc-ccCCcceEEEEEcCCCCEEEEEeC-----------CCeEEEEECCCCcEEEEeeecCcEEEEEEecCCCEE
Q 043172 340 ADKIGPLV-GREEKSLEFFEVSPDSSVIAFVGN-----------EGYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQL 407 (564)
Q Consensus 340 ~~~~~~~~-~~~~~~v~~~~~spdg~~la~~~~-----------dg~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l 407 (564)
...+.... +.....+..++++|+|+++++... .+.|+.++.. ++...........+.++|+|+++.|
T Consensus 85 ~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~~~~pngi~~spdg~~l 163 (297)
T 3g4e_A 85 AVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFDQVDISNGLDWSLDHKIF 163 (297)
T ss_dssp EEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEEEESBEEEEEECTTSCEE
T ss_pred EEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEeeccccccceEEcCCCCEE
Confidence 65443322 112235788999999997665422 2455555543 4444434455567899999999877
Q ss_pred EEE-eCCCeEEEEEC--CCCcee--EEEee--cCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccc
Q 043172 408 LSS-GGDGQVYHWDL--RTRTCI--HRAVD--EGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIEN 480 (564)
Q Consensus 408 ~s~-s~dg~V~lwD~--~~~~~~--~~~~~--~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~ 480 (564)
+++ +.++.|++|++ .++... ..+.. ........++++++|++.++....+.|.+||..++ +.+..+..
T Consensus 164 yv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG-----~~~~~i~~ 238 (297)
T 3g4e_A 164 YYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG-----KRLQTVKL 238 (297)
T ss_dssp EEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC-----CEEEEEEC
T ss_pred EEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc-----eEEEEEEC
Confidence 655 45789999997 455432 11221 11224678999999988877777889999999876 77777776
Q ss_pred cccceeEEEEc-CCCcEEEEEec
Q 043172 481 LTTKVDFMKFN-NDAQILAICST 502 (564)
Q Consensus 481 ~~~~I~~l~fs-pdg~~La~~s~ 502 (564)
+...+++++|. |+++.|++++.
T Consensus 239 p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 239 PVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp SSSBEEEEEEESGGGCEEEEEEB
T ss_pred CCCCceEEEEeCCCCCEEEEEcC
Confidence 66789999998 89888887776
No 208
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.52 E-value=6.2e-12 Score=125.30 Aligned_cols=227 Identities=13% Similarity=0.083 Sum_probs=157.0
Q ss_pred CCCCeeEEEEcCCCC-EEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCc
Q 043172 261 STGPINSVQFHRNAQ-LLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAK 339 (564)
Q Consensus 261 h~~~V~~l~fspdg~-~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~ 339 (564)
+.....+..|+|+++ ++++...++.|..|+..+. ...+..+...+..++++++|+.+++....+.|.+|+.. ++
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~----~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~ 117 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGT----VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQ 117 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSC----EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCC----EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CC
Confidence 334678899999998 5666667889999987432 34455566778999999999866655556789999986 55
Q ss_pred eeeeccc-cccCCcceEEEEEcCCCCEEEE----EeC-------------CCeEEEEECCCCcEEEEeeecCcEEEEEEe
Q 043172 340 ADKIGPL-VGREEKSLEFFEVSPDSSVIAF----VGN-------------EGYILLVSSKTKELIGTLKMNGTVRSLAFA 401 (564)
Q Consensus 340 ~~~~~~~-~~~~~~~v~~~~~spdg~~la~----~~~-------------dg~I~lwd~~t~~~~~~~~~~~~V~~l~~s 401 (564)
...+... .+.....+..++++|+|+++++ +.. .+.|+.|+..+++..... .......++|+
T Consensus 118 ~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~s 196 (305)
T 3dr2_A 118 AHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFS 196 (305)
T ss_dssp EEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEEC
T ss_pred EEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEc
Confidence 4333211 1211234677999999998775 321 367888888777765544 44567899999
Q ss_pred cCCCEEEEEeCC------CeEEEEECCCCcee--EEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcce
Q 043172 402 DDGKQLLSSGGD------GQVYHWDLRTRTCI--HRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRK 473 (564)
Q Consensus 402 pdg~~l~s~s~d------g~V~lwD~~~~~~~--~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~ 473 (564)
|+++.|+++... +.|++|++..+... ..+..........++++++|++. +++.+ .|.+|+... +
T Consensus 197 pdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lw-v~~~~-gv~~~~~~g------~ 268 (305)
T 3dr2_A 197 PDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLW-SSSGT-GVCVFDSDG------Q 268 (305)
T ss_dssp TTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEE-ECCSS-EEEEECTTS------C
T ss_pred CCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEE-EecCC-cEEEECCCC------C
Confidence 999988887665 78999998765411 11211112234568899999844 44444 499999853 5
Q ss_pred eeEEccccccceeEEEEcCCCcEEEEEec
Q 043172 474 PIKTIENLTTKVDFMKFNNDAQILAICST 502 (564)
Q Consensus 474 ~~~~~~~~~~~I~~l~fspdg~~La~~s~ 502 (564)
.+..+.... .+.+++|+|+++.|++++.
T Consensus 269 ~~~~~~~~~-~~~~~~f~~d~~~L~it~~ 296 (305)
T 3dr2_A 269 LLGHIPTPG-TASNCTFDQAQQRLFITGG 296 (305)
T ss_dssp EEEEEECSS-CCCEEEECTTSCEEEEEET
T ss_pred EEEEEECCC-ceeEEEEeCCCCEEEEEcC
Confidence 555655443 5889999999999988886
No 209
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.52 E-value=6.9e-12 Score=130.48 Aligned_cols=238 Identities=12% Similarity=0.064 Sum_probs=162.4
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCC--eEEEEECCCCc
Q 043172 262 TGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRK--FFYSLDLVKAK 339 (564)
Q Consensus 262 ~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg--~i~iwdl~~~~ 339 (564)
-.....|+|+|++.++++...++.|++|+..+. .+..+........ ++|+|+++.|+++..++ .|++|+..++.
T Consensus 130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g---~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~ 205 (409)
T 3hrp_A 130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDN---KVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGW 205 (409)
T ss_dssp CCCEEEEEECSTTEEEEEETTTTEEEEEETTTT---EEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTT
T ss_pred cCCceEEEEeCCCCEEEEecCCCcEEEEECCCC---EEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCc
Confidence 346889999999998888777899999998744 2333333333334 99999999999888755 89999987665
Q ss_pred eeeec-cccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE----ee-ecCcE-E-EEEEecC-CCEEEEE
Q 043172 340 ADKIG-PLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGT----LK-MNGTV-R-SLAFADD-GKQLLSS 410 (564)
Q Consensus 340 ~~~~~-~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~----~~-~~~~V-~-~l~~spd-g~~l~s~ 410 (564)
..... .+.......+.+++++|++..|+++..++.|+.|+..++..... .. ..+.. . .++|+|+ +.++++-
T Consensus 206 ~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d 285 (409)
T 3hrp_A 206 APTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSD 285 (409)
T ss_dssp CEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEE
T ss_pred eeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEe
Confidence 32221 11111223567899999655666677789999999987764322 11 11111 3 9999995 5555555
Q ss_pred eCCCeEEEEECCCCceeEEEeecC--------------CcceEEEEECCCCCEEEEEe-CCCcEEEEeCCcccCCcceee
Q 043172 411 GGDGQVYHWDLRTRTCIHRAVDEG--------------CINGTALCTSPDGTFFAAGS-DSGIVNVYNRQEFLGGKRKPI 475 (564)
Q Consensus 411 s~dg~V~lwD~~~~~~~~~~~~~~--------------~~~i~~l~~sp~g~~lasgs-~dg~V~iwd~~~~~~~~~~~~ 475 (564)
..++.|+.|+.... +..+.... -.....++++|+|+++++-+ .++.|++|++..+ . +
T Consensus 286 ~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G-----~-v 357 (409)
T 3hrp_A 286 QNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG-----Y-V 357 (409)
T ss_dssp TTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT-----E-E
T ss_pred CCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC-----E-E
Confidence 66789999997643 33333221 12367899999999888888 8899999997654 2 3
Q ss_pred EEcccc---------------ccceeEEEEcCCCcEEEEEecCCCCeEEEEEc
Q 043172 476 KTIENL---------------TTKVDFMKFNNDAQILAICSTMKKNSLKLIHI 513 (564)
Q Consensus 476 ~~~~~~---------------~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl 513 (564)
.++.++ -.....|+++++|.++++-.. ++.|+.+.+
T Consensus 358 ~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~--n~~Ir~i~~ 408 (409)
T 3hrp_A 358 STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAW--GKAIRKYAV 408 (409)
T ss_dssp EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEEST--TCEEEEEEE
T ss_pred EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECC--CCeEEEEEe
Confidence 333322 245789999999877776665 788888765
No 210
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.51 E-value=4.5e-12 Score=131.90 Aligned_cols=237 Identities=11% Similarity=0.074 Sum_probs=165.6
Q ss_pred CeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCC--eEEEEECCCCcE
Q 043172 308 PVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEG--YILLVSSKTKEL 385 (564)
Q Consensus 308 ~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg--~I~lwd~~t~~~ 385 (564)
....++|+++++.+++...++.|++||+.++....+... .. ... ++|+|+++.|+++..++ .|.+|+..++..
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~---~~-~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG---FK-GGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA 206 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET---CC-BCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc---CC-CCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce
Confidence 567899999998666666678999999998876554322 22 233 99999999999888765 899999877665
Q ss_pred EEEe----e-ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEE----EeecCCcceE-EEEECCC-CCEEEEEe
Q 043172 386 IGTL----K-MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHR----AVDEGCINGT-ALCTSPD-GTFFAAGS 454 (564)
Q Consensus 386 ~~~~----~-~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~----~~~~~~~~i~-~l~~sp~-g~~lasgs 454 (564)
...+ . ....+.+++++|++..|+++..++.|+.||..++..... .......... .++|+|+ +.++++.+
T Consensus 207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~ 286 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ 286 (409)
T ss_dssp EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC
Confidence 4444 2 345678999999555566677789999999987764322 1111111112 8999995 66666667
Q ss_pred CCCcEEEEeCCcccCCcceeeEEcccc---------------ccceeEEEEcCCCcEEEEEe-cCCCCeEEEEEcCCCce
Q 043172 455 DSGIVNVYNRQEFLGGKRKPIKTIENL---------------TTKVDFMKFNNDAQILAICS-TMKKNSLKLIHIPSYNV 518 (564)
Q Consensus 455 ~dg~V~iwd~~~~~~~~~~~~~~~~~~---------------~~~I~~l~fspdg~~La~~s-~~~d~~I~lwdl~s~~~ 518 (564)
..+.|..|+.... +..+.++ -.....++|+|+|+++++-+ . ++.|+.|+++++.+
T Consensus 287 ~~~~I~~~~~~g~-------~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~--~~~I~~~~~~~G~v 357 (409)
T 3hrp_A 287 NLSSVYKITPDGE-------CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFK--GYCLRKLDILDGYV 357 (409)
T ss_dssp TTTEEEEECTTCC-------EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTT--TCEEEEEETTTTEE
T ss_pred CCCEEEEEecCCC-------EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCC--CCEEEEEECCCCEE
Confidence 7889999987642 2222211 23478899999999666655 5 89999999877764
Q ss_pred eccCCC-----------CCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEc
Q 043172 519 FSNWPP-----------ANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKL 558 (564)
Q Consensus 519 ~~~~~~-----------~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l 558 (564)
...... .......+..++++|+|.++++-..+++|+.+.+
T Consensus 358 ~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 358 STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 321111 0112356899999999888888888889988876
No 211
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.50 E-value=6.4e-11 Score=119.22 Aligned_cols=225 Identities=15% Similarity=0.057 Sum_probs=154.7
Q ss_pred CeeEEEEcCCCC-EEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceee
Q 043172 264 PINSVQFHRNAQ-LLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADK 342 (564)
Q Consensus 264 ~V~~l~fspdg~-~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~ 342 (564)
...+++|+|++. ++++...++.|.+|+..+.. +..+. ....+.+++|+|+|++++++ . ..|++||..+++...
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~---~~~~~-~~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~ 123 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGR---KTVHA-LPFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTL 123 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTE---EEEEE-CSSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCc---EEEEE-CCCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEE
Confidence 356789999754 55666668899999887542 23333 34679999999999877654 3 459999998888654
Q ss_pred eccccc-cCCcceEEEEEcCCCCEEEEEeC------CCeEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEE-eCCC
Q 043172 343 IGPLVG-REEKSLEFFEVSPDSSVIAFVGN------EGYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSS-GGDG 414 (564)
Q Consensus 343 ~~~~~~-~~~~~v~~~~~spdg~~la~~~~------dg~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~-s~dg 414 (564)
+..... .....+..++++|+|+++++... .+.|..++ +++.............++|+|+++.|+.+ +.++
T Consensus 124 ~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~ 201 (326)
T 2ghs_A 124 HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVN 201 (326)
T ss_dssp EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTC
T ss_pred EeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCC
Confidence 433221 12235889999999997665432 35677777 55544333344567899999999877655 4568
Q ss_pred eEEEEECC--CC-cee--EEEee--cCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeE
Q 043172 415 QVYHWDLR--TR-TCI--HRAVD--EGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDF 487 (564)
Q Consensus 415 ~V~lwD~~--~~-~~~--~~~~~--~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~ 487 (564)
.|++|++. ++ ... ..+.. ........++++++|.+.++....+.|.+|+.. + +.+..+..+...+++
T Consensus 202 ~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g-----~~~~~i~~~~~~~~~ 275 (326)
T 2ghs_A 202 RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-G-----NHIARYEVPGKQTTC 275 (326)
T ss_dssp EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-C-----CEEEEEECSCSBEEE
T ss_pred EEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-C-----CEEEEEECCCCCcEE
Confidence 99999986 55 321 12211 122345789999999877777677889999984 3 555666655667999
Q ss_pred EEEc-CCCcEEEEEec
Q 043172 488 MKFN-NDAQILAICST 502 (564)
Q Consensus 488 l~fs-pdg~~La~~s~ 502 (564)
++|+ +++..|++++.
T Consensus 276 ~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 276 PAFIGPDASRLLVTSA 291 (326)
T ss_dssp EEEESTTSCEEEEEEB
T ss_pred EEEecCCCCEEEEEec
Confidence 9998 89888877665
No 212
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.50 E-value=6.5e-11 Score=116.41 Aligned_cols=236 Identities=9% Similarity=-0.002 Sum_probs=168.4
Q ss_pred CcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE
Q 043172 306 DCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKEL 385 (564)
Q Consensus 306 ~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~ 385 (564)
...+.++++.++|+..++...++.|.+|+.. ++.... .+... ...+..+++.++|+++++...++.|..||.. ++.
T Consensus 19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~-~~~~~-~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~ 94 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEF-EVPTP-DAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF 94 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEE-ECSST-TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEE-ECCCC-CCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe
Confidence 4567899999999877776678899999988 665432 22222 2368899999999887777667899999987 655
Q ss_pred EEEee---ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEE
Q 043172 386 IGTLK---MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVY 462 (564)
Q Consensus 386 ~~~~~---~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iw 462 (564)
. .+. ....+.++++.++|+++++...++.|..||.. ++............+..++++++|+++++....+.|.+|
T Consensus 95 ~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~ 172 (300)
T 2qc5_A 95 T-EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRI 172 (300)
T ss_dssp E-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred E-EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEE
Confidence 3 333 23578999999999877777668899999987 655432222233457899999999977766667899999
Q ss_pred eCCcccCCcceee-EEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCC
Q 043172 463 NRQEFLGGKRKPI-KTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGG 541 (564)
Q Consensus 463 d~~~~~~~~~~~~-~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg 541 (564)
+.. + ... .........+..+++.++|.++++... .+.|.+|+. ++.... +.. ..+...+.+++++++|
T Consensus 173 ~~~-g-----~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~--~~~i~~~~~-~g~~~~-~~~-~~~~~~~~~i~~d~~g 241 (300)
T 2qc5_A 173 TNT-G-----KLEEYPLPTNAAAPVGITSGNDGALWFVEIM--GNKIGRITT-TGEISE-YDI-PTPNARPHAITAGKNS 241 (300)
T ss_dssp CTT-C-----CEEEEECSSTTCCEEEEEECTTSSEEEEETT--TTEEEEECT-TCCEEE-EEC-SSTTCCEEEEEECSTT
T ss_pred CCC-C-----cEEEeeCCCCCCCcceEEECCCCCEEEEccC--CCEEEEEcC-CCcEEE-EEC-CCCCCCceEEEECCCC
Confidence 983 2 222 222334456889999999987666554 678999998 444332 111 1234668999999999
Q ss_pred CEEEEEcCCCeEEEEEc
Q 043172 542 GFMAVGNAAGKVFLYKL 558 (564)
Q Consensus 542 ~~Lasgs~dG~V~lw~l 558 (564)
.++++...++.|..|+.
T Consensus 242 ~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 242 EIWFTEWGANQIGRITN 258 (300)
T ss_dssp CEEEEETTTTEEEEECT
T ss_pred CEEEeccCCCeEEEECC
Confidence 87776666788988886
No 213
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.49 E-value=3.4e-11 Score=119.40 Aligned_cols=226 Identities=11% Similarity=0.045 Sum_probs=153.2
Q ss_pred CeEEEEEeeCCCEEEEE-eCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE
Q 043172 308 PVRKASFLPDGSQAIIA-GRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELI 386 (564)
Q Consensus 308 ~I~~l~fspdg~~l~s~-~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~ 386 (564)
-..+..|+|++..|+.+ ...+.|+.||..++..... .. . ..+.+++++|+|+++++ . ++.|.+||..+++..
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~-~~---~-~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~ 86 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRV-TM---D-APVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAV 86 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEE-EC---S-SCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEE
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEE-eC---C-CceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEE
Confidence 44578899966655554 4678999999998765322 11 1 35889999999995554 3 568999999888764
Q ss_pred EEeee-----cCcEEEEEEecCCCEEEEEeC-----------CCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEE
Q 043172 387 GTLKM-----NGTVRSLAFADDGKQLLSSGG-----------DGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFF 450 (564)
Q Consensus 387 ~~~~~-----~~~V~~l~~spdg~~l~s~s~-----------dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l 450 (564)
..... ...+++++++|+|+++++... .+.|+.++.. ++... +.... .....++|+|+++.|
T Consensus 87 ~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~-~~~~~-~~pngi~~spdg~~l 163 (297)
T 3g4e_A 87 VLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKK-YFDQV-DISNGLDWSLDHKIF 163 (297)
T ss_dssp EEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEE-EEEEE-SBEEEEEECTTSCEE
T ss_pred EEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEE-Eeecc-ccccceEEcCCCCEE
Confidence 43332 235889999999996665432 2355555543 33322 22221 235789999999866
Q ss_pred E-EEeCCCcEEEEeCC--cccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCC
Q 043172 451 A-AGSDSGIVNVYNRQ--EFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANR 527 (564)
Q Consensus 451 a-sgs~dg~V~iwd~~--~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~ 527 (564)
+ +.+..+.|.+|++. .+.....+.+..+..+...+..+++.++|++.++... .+.|.+|+..+++.+..+...
T Consensus 164 yv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~--~~~v~~~d~~tG~~~~~i~~p-- 239 (297)
T 3g4e_A 164 YYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN--GGRVIRLDPVTGKRLQTVKLP-- 239 (297)
T ss_dssp EEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET--TTEEEEECTTTCCEEEEEECS--
T ss_pred EEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC--CCEEEEEcCCCceEEEEEECC--
Confidence 4 55667899999874 3210111233444444567889999999987776665 688999999888887766443
Q ss_pred CCCCcEEEEEe-CCCCEEEEEc
Q 043172 528 NLQYPRCLDFS-PGGGFMAVGN 548 (564)
Q Consensus 528 ~~~~V~~l~fs-pdg~~Lasgs 548 (564)
...+++++|+ |+++.|++++
T Consensus 240 -~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 240 -VDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp -SSBEEEEEEESGGGCEEEEEE
T ss_pred -CCCceEEEEeCCCCCEEEEEc
Confidence 2568999998 8888776554
No 214
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.46 E-value=3.6e-11 Score=123.37 Aligned_cols=230 Identities=18% Similarity=0.140 Sum_probs=157.2
Q ss_pred Ee--eCCCEEEEEe-CCCeEEEEECCCC----ceeeecc---cc-ccCCcceEEEEEcCCCCEEEEEeCC------CeEE
Q 043172 314 FL--PDGSQAIIAG-RRKFFYSLDLVKA----KADKIGP---LV-GREEKSLEFFEVSPDSSVIAFVGNE------GYIL 376 (564)
Q Consensus 314 fs--pdg~~l~s~~-~dg~i~iwdl~~~----~~~~~~~---~~-~~~~~~v~~~~~spdg~~la~~~~d------g~I~ 376 (564)
++ +++++|++.+ .++.|+|+|+.+. +..++.. +. .........+.++|+| +++++..+ |.|.
T Consensus 89 ~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~ 167 (462)
T 2ece_A 89 GKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGIL 167 (462)
T ss_dssp CCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEE
T ss_pred cCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEE
Confidence 36 7888888776 6788999999755 3333221 11 1111134567889999 66655444 7899
Q ss_pred EEECCCCcEEEEeeec----CcEEEEEEecCCCEEEEEe-------------------CCCeEEEEECCCCceeEEEeec
Q 043172 377 LVSSKTKELIGTLKMN----GTVRSLAFADDGKQLLSSG-------------------GDGQVYHWDLRTRTCIHRAVDE 433 (564)
Q Consensus 377 lwd~~t~~~~~~~~~~----~~V~~l~~spdg~~l~s~s-------------------~dg~V~lwD~~~~~~~~~~~~~ 433 (564)
++|..+++.+..+... .-...+.|+|+++.+++.. ...+|.+||+.+++.+.++...
T Consensus 168 vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg 247 (462)
T 2ece_A 168 MLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLG 247 (462)
T ss_dssp EECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESC
T ss_pred EEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecC
Confidence 9999999999988732 2345688999999888874 3689999999998888777653
Q ss_pred -CCcceEEEEE--CCCCCEEEEEe------CCCcEEEEeCCcccCCcceeeEEc--cc----------------ccccee
Q 043172 434 -GCINGTALCT--SPDGTFFAAGS------DSGIVNVYNRQEFLGGKRKPIKTI--EN----------------LTTKVD 486 (564)
Q Consensus 434 -~~~~i~~l~~--sp~g~~lasgs------~dg~V~iwd~~~~~~~~~~~~~~~--~~----------------~~~~I~ 486 (564)
.......+.| +|+++++++++ .+++|.+|....+ .......+ .. ....+.
T Consensus 248 ~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g---~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa 324 (462)
T 2ece_A 248 EENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDG---KWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVT 324 (462)
T ss_dssp TTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETT---EEEEEEEEEECCEECCSSCCGGGGGGTEECCCCC
T ss_pred CCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCC---ceeEEEEEeCCCccccccccccccccccCCCcee
Confidence 2223345555 99999888777 4668877665432 11222211 00 024578
Q ss_pred EEEEcCCCcEEEEEecCCCCeEEEEEcCC---CceeccCCCCC-----------CCCCCcEEEEEeCCCCEEEEEc
Q 043172 487 FMKFNNDAQILAICSTMKKNSLKLIHIPS---YNVFSNWPPAN-----------RNLQYPRCLDFSPGGGFMAVGN 548 (564)
Q Consensus 487 ~l~fspdg~~La~~s~~~d~~I~lwdl~s---~~~~~~~~~~~-----------~~~~~V~~l~fspdg~~Lasgs 548 (564)
.|.+||||++|+++... .+.|.+|++.. .+....+++.. ...+....+++||||++|++++
T Consensus 325 ~I~lS~DGrfLYVSnrg-~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 325 DIDISLDDKFLYLSLWG-IGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CEEECTTSCEEEEEETT-TTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEEECCCCCEEEEEeCC-CCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 89999999999998876 78999999852 34444443321 0112468899999999999998
No 215
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.44 E-value=3.4e-12 Score=129.58 Aligned_cols=267 Identities=9% Similarity=0.052 Sum_probs=170.6
Q ss_pred CCeeEEEEcCCCCEEEEEeC--CCcEEEEEecCCCCceeEEEE-------eCCcCeEEEEEeeCCCEEEEEeC-----CC
Q 043172 263 GPINSVQFHRNAQLLLVAGL--DRRLRFFQIDGKRNTKIQSIF-------LEDCPVRKASFLPDGSQAIIAGR-----RK 328 (564)
Q Consensus 263 ~~V~~l~fspdg~~l~s~s~--dg~I~lwd~~~~~~~~~~~~~-------~~~~~I~~l~fspdg~~l~s~~~-----dg 328 (564)
..+..|+++|+|+++++... ++.++||.++. . .+..+. .+-..+..++|+++|+.+++-.. .+
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~--g-~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQ--D-GLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEET--T-EEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECC--C-CeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCC
Confidence 57899999999999888642 34367777752 2 222111 23457899999999875554433 47
Q ss_pred eEEEEECCCCceeeeccccc---cCCcceEEEEEcCCCCEEEEE-e---CCCeEEEEECCCCcEEEEee-ecCc-EEEEE
Q 043172 329 FFYSLDLVKAKADKIGPLVG---REEKSLEFFEVSPDSSVIAFV-G---NEGYILLVSSKTKELIGTLK-MNGT-VRSLA 399 (564)
Q Consensus 329 ~i~iwdl~~~~~~~~~~~~~---~~~~~v~~~~~spdg~~la~~-~---~dg~I~lwd~~t~~~~~~~~-~~~~-V~~l~ 399 (564)
.|.+||+.+++......+.. .....+..++++|++..++++ . .++.|.+||+.+++....+. |... .....
T Consensus 94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~ 173 (343)
T 2qe8_A 94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDID 173 (343)
T ss_dssp EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCC
T ss_pred eEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccc
Confidence 89999999988654433321 112246789999875555444 3 46899999999888766653 2111 10144
Q ss_pred EecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCC-cEEEEeCCcccC---Ccceee
Q 043172 400 FADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSG-IVNVYNRQEFLG---GKRKPI 475 (564)
Q Consensus 400 ~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg-~V~iwd~~~~~~---~~~~~~ 475 (564)
+.++|..+.+.+.++.+..|. ..+..|+|+|+|++|+++...+ .|..++...... ......
T Consensus 174 ~~~~g~~~~~~~~~g~~~~~~---------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 238 (343)
T 2qe8_A 174 LVIDGVPVQIGQPDGTVIRPH---------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELG 238 (343)
T ss_dssp CEETTEECBEECTTSCEECCC---------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHH
T ss_pred eeECCEEEEeccCCCceecee---------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhh
Confidence 566777777777787775553 1346799999999888887665 555554321100 000111
Q ss_pred E--EccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCC
Q 043172 476 K--TIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAG 551 (564)
Q Consensus 476 ~--~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG 551 (564)
. ...++......++++++|.++++... .+.|.+|+..+++....... .....+++++|+++|.++++.+..+
T Consensus 239 ~~~~~~g~~g~pdgia~d~~G~l~va~~~--~~~V~~~d~~~G~~~~~~~~--~~~~~p~~va~~~~g~l~v~~~~~~ 312 (343)
T 2qe8_A 239 SKIERYSEKPICDGISIDKDHNIYVGDLA--HSAIGVITSADRAYKLLVTD--EKLSWTDSFNFGSDGYLYFDCNQLH 312 (343)
T ss_dssp TTCEEEEECCSCSCEEECTTCCEEEEEGG--GTEEEEEETTTTEEEEEEEC--GGGSCEEEEEECTTSCEEEEECCGG
T ss_pred cceEecccCCCCceEEECCCCCEEEEccC--CCeEEEEECCCCCEEEEEEC--CceecCCeeEECCCCcEEEEeCccc
Confidence 1 11123345677999999988887776 78999999855553222111 1245689999999998888776443
No 216
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.44 E-value=1.1e-11 Score=137.88 Aligned_cols=252 Identities=13% Similarity=0.111 Sum_probs=163.2
Q ss_pred eecccCC-CCCCCCeeEEEEcCCCCEEEEEeC-----CCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEe
Q 043172 252 LIDANAD-ESSTGPINSVQFHRNAQLLLVAGL-----DRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAG 325 (564)
Q Consensus 252 l~~~~~~-~~h~~~V~~l~fspdg~~l~s~s~-----dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~ 325 (564)
+.+.|.. .+|...|..++|||||++||.+.. ..+|++||+.++. .+.. ..+......++|+ ||+.|+.++
T Consensus 117 llD~n~la~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~--~~~~-~~~~~k~~~~~Ws-Dg~~l~y~~ 192 (693)
T 3iuj_A 117 FLDPNTLSPDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQ--PLET-PLKDVKFSGISWL-GNEGFFYSS 192 (693)
T ss_dssp EECGGGGSTTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCS--EEEE-EEEEEESCCCEEE-TTTEEEEEE
T ss_pred EEehhhccCCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCC--CCcc-ccCCceeccEEEe-CCCEEEEEE
Confidence 4444432 346678999999999998885432 2579999998654 2221 1111123577899 999999988
Q ss_pred CCC-------------eEEEEECCCCcee--eeccccc-cCCcceEEEEEcCCCCEEEEEeC----CCeEEEEECCCC--
Q 043172 326 RRK-------------FFYSLDLVKAKAD--KIGPLVG-REEKSLEFFEVSPDSSVIAFVGN----EGYILLVSSKTK-- 383 (564)
Q Consensus 326 ~dg-------------~i~iwdl~~~~~~--~~~~~~~-~~~~~v~~~~~spdg~~la~~~~----dg~I~lwd~~t~-- 383 (564)
.+. .|++|++.++... .+..... +. ..+..+.|+|+|++|++... .+.|+++++.++
T Consensus 193 ~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~-~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~ 271 (693)
T 3iuj_A 193 YDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQH-HRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENA 271 (693)
T ss_dssp SSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGC-CSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTC
T ss_pred ecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCC-eEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCC
Confidence 763 4999999887532 2322222 22 24678999999998876543 258999999876
Q ss_pred cEEEEeeecCcEEEEEEecCCCEEEEEe-C---CCeEEEEECCCCce--eEEEeecCCcceEEEEECCCCCEEEEEeCCC
Q 043172 384 ELIGTLKMNGTVRSLAFADDGKQLLSSG-G---DGQVYHWDLRTRTC--IHRAVDEGCINGTALCTSPDGTFFAAGSDSG 457 (564)
Q Consensus 384 ~~~~~~~~~~~V~~l~~spdg~~l~s~s-~---dg~V~lwD~~~~~~--~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg 457 (564)
.......+....... |+++|..|+..+ . .+.|+.+|+.++.. ...+..+.. .+. .|++++++|+....++
T Consensus 272 ~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~-~~~--~~s~~g~~lv~~~~~~ 347 (693)
T 3iuj_A 272 PLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQ-QVL--TVHSGSGYLFAEYMVD 347 (693)
T ss_dssp CCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS-SCE--EEEEETTEEEEEEEET
T ss_pred ceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCC-CEE--EEEEECCEEEEEEEEC
Confidence 333333344444444 666666555544 3 36899999987654 234444433 233 7889998887776543
Q ss_pred ---cEEEEeCCcccCCcceeeEEcc-ccccceeEEEEcCCCcEEEEEec--CCCCeEEEEEcCCCce
Q 043172 458 ---IVNVYNRQEFLGGKRKPIKTIE-NLTTKVDFMKFNNDAQILAICST--MKKNSLKLIHIPSYNV 518 (564)
Q Consensus 458 ---~V~iwd~~~~~~~~~~~~~~~~-~~~~~I~~l~fspdg~~La~~s~--~~d~~I~lwdl~s~~~ 518 (564)
.|.+|++... ....+. .....+..+.+++++..|+.... ...+.|..|++.+++.
T Consensus 348 g~~~l~~~d~~g~------~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 348 ATARVEQFDYEGK------RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp TEEEEEEECTTSC------EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred CeeEEEEEECCCC------eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 6888988753 333332 23456777888888887766544 2237899999877653
No 217
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.44 E-value=1.5e-10 Score=116.49 Aligned_cols=223 Identities=14% Similarity=0.097 Sum_probs=150.0
Q ss_pred eEEEEEeeCCCEEEEE-eCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE
Q 043172 309 VRKASFLPDGSQAIIA-GRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIG 387 (564)
Q Consensus 309 I~~l~fspdg~~l~s~-~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~ 387 (564)
..+.+|+|++..++.+ ...+.|++|+..++..... .. . ..+.+++++|+|+++++. . ..|.+||..+++...
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~-~~---~-~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~ 123 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTVH-AL---P-FMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTL 123 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEE-EC---S-SCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEE-EC---C-CcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEE
Confidence 4577899976655554 4678999999998865432 11 1 258899999999877754 4 449999998887654
Q ss_pred Eeee-----cCcEEEEEEecCCCEEEEEeC------CCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEE-eC
Q 043172 388 TLKM-----NGTVRSLAFADDGKQLLSSGG------DGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAG-SD 455 (564)
Q Consensus 388 ~~~~-----~~~V~~l~~spdg~~l~s~s~------dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasg-s~ 455 (564)
.... ...+.+++++|+|+++++... .+.|+.++ +++... +.... .....++|+|++++|+++ +.
T Consensus 124 ~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~-~~~~~i~~s~dg~~lyv~~~~ 199 (326)
T 2ghs_A 124 HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADI-SIPNSICFSPDGTTGYFVDTK 199 (326)
T ss_dssp EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEE-SSEEEEEECTTSCEEEEEETT
T ss_pred EeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCC-cccCCeEEcCCCCEEEEEECC
Confidence 3322 235899999999997665432 35677777 454432 32221 235689999999876554 55
Q ss_pred CCcEEEEeCC--cc-cCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCc
Q 043172 456 SGIVNVYNRQ--EF-LGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYP 532 (564)
Q Consensus 456 dg~V~iwd~~--~~-~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V 532 (564)
++.|.+|++. ++ .......+..+......+..+++.++|.+.++... .+.|.+|+. ++..+..+... ...+
T Consensus 200 ~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~--~~~v~~~d~-~g~~~~~i~~~---~~~~ 273 (326)
T 2ghs_A 200 VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG--EGAVDRYDT-DGNHIARYEVP---GKQT 273 (326)
T ss_dssp TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET--TTEEEEECT-TCCEEEEEECS---CSBE
T ss_pred CCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeC--CCEEEEECC-CCCEEEEEECC---CCCc
Confidence 7899999985 32 11112233344334456788999999987776655 678999998 56655544332 3468
Q ss_pred EEEEEe-CCCCEEEEEc
Q 043172 533 RCLDFS-PGGGFMAVGN 548 (564)
Q Consensus 533 ~~l~fs-pdg~~Lasgs 548 (564)
++++|+ |+++.|++++
T Consensus 274 ~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 274 TCPAFIGPDASRLLVTS 290 (326)
T ss_dssp EEEEEESTTSCEEEEEE
T ss_pred EEEEEecCCCCEEEEEe
Confidence 999998 8988776554
No 218
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.43 E-value=4.5e-11 Score=119.00 Aligned_cols=238 Identities=8% Similarity=0.032 Sum_probs=156.8
Q ss_pred eeEEEEeCCcCeEEEEEeeCCCEEE-EEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEE
Q 043172 298 KIQSIFLEDCPVRKASFLPDGSQAI-IAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYIL 376 (564)
Q Consensus 298 ~~~~~~~~~~~I~~l~fspdg~~l~-s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~ 376 (564)
.+..+...........|+|+|+.|+ +...++.|+.|+. ++..... .... ..+..++++++|+++++....+.|.
T Consensus 36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~~---~~~~-~~~~gl~~d~dG~l~v~~~~~~~v~ 110 (305)
T 3dr2_A 36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDVL---LDAT-AFTNGNAVDAQQRLVHCEHGRRAIT 110 (305)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEEE---EESC-SCEEEEEECTTSCEEEEETTTTEEE
T ss_pred ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEEE---eCCC-CccceeeECCCCCEEEEECCCCEEE
Confidence 3444444555677899999999554 4456789999998 4543222 1222 3578999999999776665668899
Q ss_pred EEECCCCcEEEEeee-----cCcEEEEEEecCCCEEEE----EeC-------------CCeEEEEECCCCceeEEEeecC
Q 043172 377 LVSSKTKELIGTLKM-----NGTVRSLAFADDGKQLLS----SGG-------------DGQVYHWDLRTRTCIHRAVDEG 434 (564)
Q Consensus 377 lwd~~t~~~~~~~~~-----~~~V~~l~~spdg~~l~s----~s~-------------dg~V~lwD~~~~~~~~~~~~~~ 434 (564)
+|+.. ++....... ...+.++++.|+|+++++ |.. .+.|+.||..+++..... .
T Consensus 111 ~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~-- 186 (305)
T 3dr2_A 111 RSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-D-- 186 (305)
T ss_dssp EECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-E--
T ss_pred EECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-c--
Confidence 99986 554332221 234678999999997775 321 357888888766654433 2
Q ss_pred CcceEEEEECCCCCEEEEEeCC------CcEEEEeCCcccCCcceeeEEc-cccccceeEEEEcCCCcEEEEEecCCCCe
Q 043172 435 CINGTALCTSPDGTFFAAGSDS------GIVNVYNRQEFLGGKRKPIKTI-ENLTTKVDFMKFNNDAQILAICSTMKKNS 507 (564)
Q Consensus 435 ~~~i~~l~~sp~g~~lasgs~d------g~V~iwd~~~~~~~~~~~~~~~-~~~~~~I~~l~fspdg~~La~~s~~~d~~ 507 (564)
......++|+|++++|+++... +.|.+|++.... ......+ ......+..+++.++|++.+ ++. +.
T Consensus 187 ~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~---l~~~~~~~~~~~~~pdgi~~d~~G~lwv-~~~---~g 259 (305)
T 3dr2_A 187 LDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA---LHDRRHFASVPDGLPDGFCVDRGGWLWS-SSG---TG 259 (305)
T ss_dssp ESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE---EEEEEEEECCSSSCCCSEEECTTSCEEE-CCS---SE
T ss_pred CCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC---ccCCeEEEECCCCCCCeEEECCCCCEEE-ecC---Cc
Confidence 2245789999999987777654 689999987531 0111111 11234456789999999544 443 35
Q ss_pred EEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEE
Q 043172 508 LKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYK 557 (564)
Q Consensus 508 I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~ 557 (564)
|.+|+. .++.+..+... ..+.+++|+|+++.|++++.++ ++.++
T Consensus 260 v~~~~~-~g~~~~~~~~~----~~~~~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 260 VCVFDS-DGQLLGHIPTP----GTASNCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp EEEECT-TSCEEEEEECS----SCCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred EEEECC-CCCEEEEEECC----CceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence 999997 46666555443 2478999999999888887765 43333
No 219
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.42 E-value=9.3e-12 Score=129.03 Aligned_cols=240 Identities=15% Similarity=0.102 Sum_probs=165.9
Q ss_pred EEEEcCCCCEEEEEe----------CCCcEEEEEecCCCCceeEEEEeC-------CcCeEEEEEeeCCCEEEEEeC--C
Q 043172 267 SVQFHRNAQLLLVAG----------LDRRLRFFQIDGKRNTKIQSIFLE-------DCPVRKASFLPDGSQAIIAGR--R 327 (564)
Q Consensus 267 ~l~fspdg~~l~s~s----------~dg~I~lwd~~~~~~~~~~~~~~~-------~~~I~~l~fspdg~~l~s~~~--d 327 (564)
.++++|++++|+++. .++.|.++|.. +...+..+... ......++|+|+|++|+++.. .
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~--t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~ 199 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPV--TFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPA 199 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT--TCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSS
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECC--CCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCC
Confidence 899999999888876 36789999876 45566666543 223567899999999999874 5
Q ss_pred CeEEEEECCCCceeeeccccccCCcceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEEEE----ee-ecCc-EEEEEE
Q 043172 328 KFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDS-SVIAFVGNEGYILLVSSKTKELIGT----LK-MNGT-VRSLAF 400 (564)
Q Consensus 328 g~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg-~~la~~~~dg~I~lwd~~t~~~~~~----~~-~~~~-V~~l~~ 400 (564)
+.|.++|+.+++......+.+. ....|++ ..+++.+.+|.+.+.++.+++.... +. ...+ ...+.|
T Consensus 200 ~~VsVID~~t~kvv~~I~v~g~-------~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~ 272 (426)
T 3c75_H 200 PAVGVVDLEGKTFDRMLDVPDC-------YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAF 272 (426)
T ss_dssp CEEEEEETTTTEEEEEEECCSE-------EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEE
T ss_pred CeEEEEECCCCeEEEEEEcCCc-------eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeee
Confidence 7899999999987654333221 2233332 4455556677777777755554422 11 1111 123567
Q ss_pred ecCCCEEEEEeCCCeEEEEECCCCcee--EEEeec--C-------CcceEEEEECCCCCEEEEEeC----------CCcE
Q 043172 401 ADDGKQLLSSGGDGQVYHWDLRTRTCI--HRAVDE--G-------CINGTALCTSPDGTFFAAGSD----------SGIV 459 (564)
Q Consensus 401 spdg~~l~s~s~dg~V~lwD~~~~~~~--~~~~~~--~-------~~~i~~l~~sp~g~~lasgs~----------dg~V 459 (564)
.+++..++..+..+.|++.|+...... ..+... . ......++++|+++.+++... ++.|
T Consensus 273 ~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~V 352 (426)
T 3c75_H 273 SLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFV 352 (426)
T ss_dssp CTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEE
T ss_pred cCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEE
Confidence 899888888888899999999765422 111110 0 011123688999887666542 3579
Q ss_pred EEEeCCcccCCcceeeEEccccccceeEEEEcCCCc-EEEEEecCCCCeEEEEEcCCCceeccC
Q 043172 460 NVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQ-ILAICSTMKKNSLKLIHIPSYNVFSNW 522 (564)
Q Consensus 460 ~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~-~La~~s~~~d~~I~lwdl~s~~~~~~~ 522 (564)
.++|..+. +.+.++.. .....+|+|+|||+ +|+++... ++.|.++|+.+++++..+
T Consensus 353 sVID~~T~-----kvv~~I~v-g~~P~gia~spDg~~~lyv~n~~-s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 353 VVLNAETG-----ERINKIEL-GHEIDSINVSQDAEPLLYALSAG-TQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEETTTC-----CEEEEEEE-EEEECEEEECCSSSCEEEEEETT-TTEEEEEETTTCCEEEEE
T ss_pred EEEECCCC-----eEEEEEEC-CCCcCeEEEccCCCEEEEEEcCC-CCeEEEEECCCCCEEEEe
Confidence 99999987 88888763 34688999999999 77777743 899999999999998876
No 220
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.41 E-value=6.4e-12 Score=128.10 Aligned_cols=256 Identities=7% Similarity=-0.059 Sum_probs=169.4
Q ss_pred cEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEe----------CCCeEEEEECCCCceeeeccccccC----
Q 043172 285 RLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAG----------RRKFFYSLDLVKAKADKIGPLVGRE---- 350 (564)
Q Consensus 285 ~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~----------~dg~i~iwdl~~~~~~~~~~~~~~~---- 350 (564)
+|.++|.. +...+.++.....| .+.|+|+|++++++. .++.|.+||+.+++......+.+..
T Consensus 47 ~vsvID~~--t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~ 122 (368)
T 1mda_H 47 ENWVSCAG--CGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSV 122 (368)
T ss_dssp EEEEEETT--TTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCB
T ss_pred eEEEEECC--CCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCcccccc
Confidence 67788766 66788888877777 799999999999886 3678999999999886554433110
Q ss_pred CcceEEEEEcCCCCEEEEEeC--CCeEEE--EECCCCcEEEEeeecCcEEEEEEecCC-CEEEEEeCCCeEEEEECCC--
Q 043172 351 EKSLEFFEVSPDSSVIAFVGN--EGYILL--VSSKTKELIGTLKMNGTVRSLAFADDG-KQLLSSGGDGQVYHWDLRT-- 423 (564)
Q Consensus 351 ~~~v~~~~~spdg~~la~~~~--dg~I~l--wd~~t~~~~~~~~~~~~V~~l~~spdg-~~l~s~s~dg~V~lwD~~~-- 423 (564)
......++++|||++++++.. ...|.+ +|+.+ +..+...+. +.+.|++ +.+++.+.||.+.+.|+.+
T Consensus 123 g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~ 196 (368)
T 1mda_H 123 GPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC---FHIHPGAAATHYLGSCPASLAASDLAAAP 196 (368)
T ss_dssp SCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC---CCCEEEETTEEECCCCTTSCEEEECCSSC
T ss_pred CCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc---eEEccCCCeEEEEEcCCCCEEEEECcccc
Confidence 012456999999999998874 467888 99877 445543222 2234544 3445556788888888876
Q ss_pred ---CceeEE---EeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccc----------cccceeE
Q 043172 424 ---RTCIHR---AVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIEN----------LTTKVDF 487 (564)
Q Consensus 424 ---~~~~~~---~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~----------~~~~I~~ 487 (564)
++.+.. +..-+..+. + ++++..++..+. +.|.+.|.... ..+.+..+.- .......
T Consensus 197 ~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~---~~~v~~~~~~~~~~~~~~~~~p~g~~~ 268 (368)
T 1mda_H 197 AAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAA---GATMKAAIDGNESGRKADNFRSAGFQM 268 (368)
T ss_dssp CCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSS---CCEEECCCCSSCTHHHHTTEEECSSSC
T ss_pred ccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCC---cceEEEEEEeccccccccccccCccee
Confidence 332211 011111122 3 566666666666 99999998642 1122222211 0111223
Q ss_pred EEEcCCCcEEEEEec-C-C-----CCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCE-EEEEc-CCCeEEEEEc
Q 043172 488 MKFNNDAQILAICST-M-K-----KNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGF-MAVGN-AAGKVFLYKL 558 (564)
Q Consensus 488 l~fspdg~~La~~s~-~-~-----d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~-Lasgs-~dG~V~lw~l 558 (564)
++|+|+++.|+++.. . . .+.+.++|+.+.+.+..++.. ....+++|+|+|++ +++.+ .++.|.++|+
T Consensus 269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg----~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~ 344 (368)
T 1mda_H 269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG----HDSDAIIAAQDGASDNYANSAGTEVLDIYDA 344 (368)
T ss_dssp EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE----EEECEEEECCSSSCEEEEEETTTTEEEEEES
T ss_pred eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC----CCcceEEECCCCCEEEEEccCCCCeEEEEEC
Confidence 789999998887643 1 1 134669999999999888765 35789999999985 45555 4899999999
Q ss_pred CCCC
Q 043172 559 NHYH 562 (564)
Q Consensus 559 ~~~~ 562 (564)
.+++
T Consensus 345 ~t~k 348 (368)
T 1mda_H 345 ASDQ 348 (368)
T ss_dssp SSCE
T ss_pred CCCc
Confidence 8764
No 221
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.41 E-value=8.6e-12 Score=127.58 Aligned_cols=174 Identities=14% Similarity=0.094 Sum_probs=132.0
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEEecCCC---------CceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEE
Q 043172 264 PINSVQFHRNAQLLLVAGLDRRLRFFQIDGKR---------NTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLD 334 (564)
Q Consensus 264 ~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~---------~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwd 334 (564)
+++.+++++...++++|+.++ +.+|++.... ......+. +.. |+.++| ++++|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~-lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE-IPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE-CTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEee-CCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 799999999999999999875 6669875321 12223333 455 999999 89999998 789999999
Q ss_pred CCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEEeCCC
Q 043172 335 LVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSGGDG 414 (564)
Q Consensus 335 l~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s~dg 414 (564)
+.+..... ....+.. .+..+.+.+. .+++++.+|.|.+||+.+++... +...|+|++|+|+| ++.|..||
T Consensus 113 v~sl~~~~--~~~~~~~-~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG--~~vg~~dg 182 (388)
T 1xip_A 113 LEELSEFR--TVTSFEK-PVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ--LAVLLKDR 182 (388)
T ss_dssp SSSTTCEE--EEEECSS-CEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE---EEESEEEEEECSSE--EEEEETTS
T ss_pred chhhhccC--ccceeec-ceeeEEecCC--CEEEEECCCCEEEEEccCCcccc---ccCCceEEEEcCCc--eEEEEcCC
Confidence 88765322 2223333 4667766654 38888999999999999887653 45689999999999 67889999
Q ss_pred eEEEEECCCCce--eEEEee--------cCCcceEEEEECCCCCEEEEE
Q 043172 415 QVYHWDLRTRTC--IHRAVD--------EGCINGTALCTSPDGTFFAAG 453 (564)
Q Consensus 415 ~V~lwD~~~~~~--~~~~~~--------~~~~~i~~l~~sp~g~~lasg 453 (564)
.+++|+.....+ ...+.. .+...+.+|+|.+++.++++=
T Consensus 183 ~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 183 SFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp CEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred cEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 999999987775 445521 245689999999999988864
No 222
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.37 E-value=1.1e-11 Score=126.74 Aligned_cols=174 Identities=14% Similarity=0.101 Sum_probs=131.5
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----------EEEEeeecCcEEEEEEecCCCEEEEEeCCCeEEEEEC
Q 043172 353 SLEFFEVSPDSSVIAFVGNEGYILLVSSKTKE-----------LIGTLKMNGTVRSLAFADDGKQLLSSGGDGQVYHWDL 421 (564)
Q Consensus 353 ~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~-----------~~~~~~~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~ 421 (564)
++..+++++...++++|+.++ +.+|++.... ......+.. |+.++| ++++|+++ .++.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence 578899999999999999875 5559875433 223334667 999999 89999998 7899999999
Q ss_pred CCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEe
Q 043172 422 RTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICS 501 (564)
Q Consensus 422 ~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s 501 (564)
.+.......... ...+..+.+.+. .+++++.+|.|.+||+... .... +...|++++|||+| +++|.
T Consensus 114 ~sl~~~~~~~~~-~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~-----~~~~----~~~~Vs~v~WSpkG--~~vg~ 179 (388)
T 1xip_A 114 EELSEFRTVTSF-EKPVFQLKNVNN--TLVILNSVNDLSALDLRTK-----STKQ----LAQNVTSFDVTNSQ--LAVLL 179 (388)
T ss_dssp SSTTCEEEEEEC-SSCEEEEEECSS--EEEEEETTSEEEEEETTTC-----CEEE----EEESEEEEEECSSE--EEEEE
T ss_pred hhhhccCcccee-ecceeeEEecCC--CEEEEECCCCEEEEEccCC-----cccc----ccCCceEEEEcCCc--eEEEE
Confidence 876654444333 345677776654 3888999999999999875 3322 45689999999999 67777
Q ss_pred cCCCCeEEEEEcCCCce--eccCCCC------CCCCCCcEEEEEeCCCCEEEEE
Q 043172 502 TMKKNSLKLIHIPSYNV--FSNWPPA------NRNLQYPRCLDFSPGGGFMAVG 547 (564)
Q Consensus 502 ~~~d~~I~lwdl~s~~~--~~~~~~~------~~~~~~V~~l~fspdg~~Lasg 547 (564)
. ||.+++|+...+.+ ...++.. ..+...|.++.|.+++.+|++=
T Consensus 180 ~--dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 180 K--DRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp T--TSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred c--CCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 7 89999998887764 4444321 1245789999999999998863
No 223
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.35 E-value=1.1e-10 Score=123.95 Aligned_cols=227 Identities=12% Similarity=0.063 Sum_probs=160.9
Q ss_pred eCCCEEEEEeC-CCeEEEEECCCCceeeeccccccCCcceEEEEE-c-CCCCEEEEEe------------------CCCe
Q 043172 316 PDGSQAIIAGR-RKFFYSLDLVKAKADKIGPLVGREEKSLEFFEV-S-PDSSVIAFVG------------------NEGY 374 (564)
Q Consensus 316 pdg~~l~s~~~-dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~-s-pdg~~la~~~------------------~dg~ 374 (564)
+||++|+++.. +..|.+.|+.+.++.++..++... ....+++ + |++.++++++ .++.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~--~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~ 176 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAK--GIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV 176 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCC--SEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCC--CCcceeeeecCCCcEEEEecccccccCCCCcccccccccCce
Confidence 38899988764 568999999999987766555433 4778888 5 9999998885 2468
Q ss_pred EEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEEeCCC--------------------------------------eE
Q 043172 375 ILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSGGDG--------------------------------------QV 416 (564)
Q Consensus 375 I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s~dg--------------------------------------~V 416 (564)
+.++|..+++.+.++...+....++++|+|+++++++.+. .|
T Consensus 177 vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V 256 (595)
T 1fwx_A 177 FTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV 256 (595)
T ss_dssp EEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred EEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence 9999999999999988656778889999999999888543 47
Q ss_pred EEEECCC--Cce-eEEEeecCCcceEEEEECCCCCEEEEEe-CCCcEEEEeCCccc-------CCcceeeEEccccccce
Q 043172 417 YHWDLRT--RTC-IHRAVDEGCINGTALCTSPDGTFFAAGS-DSGIVNVYNRQEFL-------GGKRKPIKTIENLTTKV 485 (564)
Q Consensus 417 ~lwD~~~--~~~-~~~~~~~~~~~i~~l~~sp~g~~lasgs-~dg~V~iwd~~~~~-------~~~~~~~~~~~~~~~~I 485 (564)
.+.|.++ ++. +..+.... ...++.++|+|+++++++ .+.+|.+||+.+.. ......+..+ ......
T Consensus 257 ~VID~~~~~~~~~~~~Ipvg~--~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v-~vG~gP 333 (595)
T 1fwx_A 257 KVVDGRKEASSLFTRYIPIAN--NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP-ELGLGP 333 (595)
T ss_dssp EEEECSGGGCCSSEEEEEEES--SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC-BCCSCE
T ss_pred EEEeCcccCCceeEEEEecCC--CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc-CCCCCc
Confidence 7788877 444 44444322 345789999999877665 57899999998640 0001123333 244668
Q ss_pred eEEEEcCCCcEEEEEecCCCCeEEEEEcCC----------CceeccCCCCCCC--CCCcEEEEEeCCCCEEEEEcC
Q 043172 486 DFMKFNNDAQILAICSTMKKNSLKLIHIPS----------YNVFSNWPPANRN--LQYPRCLDFSPGGGFMAVGNA 549 (564)
Q Consensus 486 ~~l~fspdg~~La~~s~~~d~~I~lwdl~s----------~~~~~~~~~~~~~--~~~V~~l~fspdg~~Lasgs~ 549 (564)
.+++|+|+| ++++...- +++|.+|++.. ...+..++....+ ...-.++.++|||++|++++.
T Consensus 334 ~h~aF~~dG-~aY~t~~l-dsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 334 LHTAFDGRG-NAYTSLFL-DSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp EEEEECTTS-EEEEEETT-TTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred ceEEECCCC-eEEEEEec-CCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence 899999999 66655543 89999999976 4455555443211 111122345899999998874
No 224
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.34 E-value=4.3e-11 Score=133.18 Aligned_cols=240 Identities=9% Similarity=0.033 Sum_probs=156.7
Q ss_pred CcCeEEEEEeeCCCEEEEEe-----CCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCC-------
Q 043172 306 DCPVRKASFLPDGSQAIIAG-----RRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEG------- 373 (564)
Q Consensus 306 ~~~I~~l~fspdg~~l~s~~-----~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg------- 373 (564)
...+..++|||||++|+.+. ....|++||+.+++.... .+.+. ....++|+ ||+.|+.++.+.
T Consensus 128 ~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~~---k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~ 202 (693)
T 3iuj_A 128 TTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-PLKDV---KFSGISWL-GNEGFFYSSYDKPDGSELS 202 (693)
T ss_dssp CCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EEEEE---ESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred cEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-ccCCc---eeccEEEe-CCCEEEEEEecCccccccc
Confidence 34677889999999998653 225799999999986443 12211 12467899 999999988763
Q ss_pred ------eEEEEECCCCcE--EEEeee----cCcEEEEEEecCCCEEEEEeC----CCeEEEEECCCCc-eeEEEeecCCc
Q 043172 374 ------YILLVSSKTKEL--IGTLKM----NGTVRSLAFADDGKQLLSSGG----DGQVYHWDLRTRT-CIHRAVDEGCI 436 (564)
Q Consensus 374 ------~I~lwd~~t~~~--~~~~~~----~~~V~~l~~spdg~~l~s~s~----dg~V~lwD~~~~~-~~~~~~~~~~~ 436 (564)
.|++|++.+++. ...+.. ...+.++.|+|||++|+.... ...|++||+.++. ....+.....
T Consensus 203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~- 281 (693)
T 3iuj_A 203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLD- 281 (693)
T ss_dssp --CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSS-
T ss_pred ccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCC-
Confidence 499999987653 223322 235788999999998865543 2589999998763 3344443332
Q ss_pred ceEEEEECCCCCEEEEEeC----CCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCC--eEEE
Q 043172 437 NGTALCTSPDGTFFAAGSD----SGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKN--SLKL 510 (564)
Q Consensus 437 ~i~~l~~sp~g~~lasgs~----dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~--~I~l 510 (564)
..... ++++|..|+..+. .+.|.++++... .......+..+...+. .|++++++|+..... ++ .|++
T Consensus 282 ~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~---~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~-~g~~~l~~ 354 (693)
T 3iuj_A 282 ADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANP---GPAHWRDLIPERQQVL--TVHSGSGYLFAEYMV-DATARVEQ 354 (693)
T ss_dssp SCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSC---CGGGCEEEECCCSSCE--EEEEETTEEEEEEEE-TTEEEEEE
T ss_pred ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCC---CccccEEEecCCCCEE--EEEEECCEEEEEEEE-CCeeEEEE
Confidence 22333 5666666555443 367889998764 1111334444555554 899999988877762 33 6888
Q ss_pred EEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCC----CeEEEEEcCCC
Q 043172 511 IHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAA----GKVFLYKLNHY 561 (564)
Q Consensus 511 wdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~d----G~V~lw~l~~~ 561 (564)
|++..+.. ..++.. ..+.+..+.++|++..|+....+ +.|+.|++.+.
T Consensus 355 ~d~~g~~~-~~l~~p--~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 355 FDYEGKRV-REVALP--GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG 406 (693)
T ss_dssp ECTTSCEE-EEECCS--SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred EECCCCee-EEeecC--CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence 98875433 322221 22457778888888877655444 78999988654
No 225
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.29 E-value=2.4e-09 Score=109.92 Aligned_cols=230 Identities=13% Similarity=0.017 Sum_probs=154.5
Q ss_pred EEc--CCCCEEEEEe-CCCcEEEEEecCC--CCceeEEEE-------eCCcCeEEEEEeeCCCEEEEEeCC------CeE
Q 043172 269 QFH--RNAQLLLVAG-LDRRLRFFQIDGK--RNTKIQSIF-------LEDCPVRKASFLPDGSQAIIAGRR------KFF 330 (564)
Q Consensus 269 ~fs--pdg~~l~s~s-~dg~I~lwd~~~~--~~~~~~~~~-------~~~~~I~~l~fspdg~~l~s~~~d------g~i 330 (564)
.++ +++++|++.+ .+++|.++|+... ....+..+. ......+.+..+|+| .++++..+ +.|
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v 166 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI 166 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence 446 7888777655 4789999998632 223334441 011244667788999 66665444 789
Q ss_pred EEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEe-------------------CCCeEEEEECCCCcEEEEeee
Q 043172 331 YSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVG-------------------NEGYILLVSSKTKELIGTLKM 391 (564)
Q Consensus 331 ~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~-------------------~dg~I~lwd~~t~~~~~~~~~ 391 (564)
.++|..+.++.............-..+.|+|+++.+++.. ....|.+||+.+++.+.++..
T Consensus 167 ~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~v 246 (462)
T 2ece_A 167 LMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTL 246 (462)
T ss_dssp EEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEES
T ss_pred EEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEec
Confidence 9999999988665443322222233588899999888874 368999999999988888874
Q ss_pred c---CcEEEEEE--ecCCCEEEEEe------CCCeEEEEECCCCcee--EEE--eec---C------------CcceEEE
Q 043172 392 N---GTVRSLAF--ADDGKQLLSSG------GDGQVYHWDLRTRTCI--HRA--VDE---G------------CINGTAL 441 (564)
Q Consensus 392 ~---~~V~~l~~--spdg~~l~s~s------~dg~V~lwD~~~~~~~--~~~--~~~---~------------~~~i~~l 441 (564)
. .....+.| +|+++++++++ .+++|.+|....+... ..+ ... . ......|
T Consensus 247 g~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I 326 (462)
T 2ece_A 247 GEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDI 326 (462)
T ss_dssp CTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCE
T ss_pred CCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEE
Confidence 3 34556656 99999888877 4668887766544321 111 100 0 1235789
Q ss_pred EECCCCCEEEEEeC-CCcEEEEeCCcccCCcceeeEEccccc--------------cceeEEEEcCCCcEEEEEe
Q 043172 442 CTSPDGTFFAAGSD-SGIVNVYNRQEFLGGKRKPIKTIENLT--------------TKVDFMKFNNDAQILAICS 501 (564)
Q Consensus 442 ~~sp~g~~lasgs~-dg~V~iwd~~~~~~~~~~~~~~~~~~~--------------~~I~~l~fspdg~~La~~s 501 (564)
.+|++|++|.++.. .+.|.+||+... ..++.+..+.... .....++++|||++|+++.
T Consensus 327 ~lS~DGrfLYVSnrg~d~VavfdV~d~--~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 327 DISLDDKFLYLSLWGIGEVRQYDISNP--FKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp EECTTSCEEEEEETTTTEEEEEECSST--TSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EECCCCCEEEEEeCCCCEEEEEEecCC--CCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 99999998887764 689999998643 3345555553211 1357899999999999988
No 226
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.27 E-value=5e-11 Score=121.48 Aligned_cols=246 Identities=9% Similarity=-0.069 Sum_probs=162.3
Q ss_pred EEEEcCCCCEEEEEe----------CCCcEEEEEecCCCCceeEEEEeCC-------cCeEEEEEeeCCCEEEEEeC--C
Q 043172 267 SVQFHRNAQLLLVAG----------LDRRLRFFQIDGKRNTKIQSIFLED-------CPVRKASFLPDGSQAIIAGR--R 327 (564)
Q Consensus 267 ~l~fspdg~~l~s~s----------~dg~I~lwd~~~~~~~~~~~~~~~~-------~~I~~l~fspdg~~l~s~~~--d 327 (564)
.+.|+|++++|+++. .+++|.+||.. +...+..+..+. .....++|+|||++++++.. .
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~--T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~ 146 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPV--TFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSS 146 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTT--TCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSS
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECC--CCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCC
Confidence 799999999998886 36889999887 455777776541 23568999999999999874 4
Q ss_pred CeEEE--EECCCCceeeeccccccCCcceEEEEEcCCCC-EEEEEeCCCeEEEEECCC-----CcEEEE----ee-ecCc
Q 043172 328 KFFYS--LDLVKAKADKIGPLVGREEKSLEFFEVSPDSS-VIAFVGNEGYILLVSSKT-----KELIGT----LK-MNGT 394 (564)
Q Consensus 328 g~i~i--wdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~-~la~~~~dg~I~lwd~~t-----~~~~~~----~~-~~~~ 394 (564)
..+.+ +|+.+ ...+ .+.+. +.+.|++. .+++.+.+|.+.+.++.+ ++.+.. +. ...+
T Consensus 147 ~~v~V~~iD~~t--v~~i-~v~~~-------~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P 216 (368)
T 1mda_H 147 AAAGLSVPGASD--DQLT-KSASC-------FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQA 216 (368)
T ss_dssp CEEEEEETTTEE--EEEE-ECSSC-------CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCC
T ss_pred CeEEEEEEchhh--ceEE-ECCCc-------eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCc
Confidence 67888 88877 2222 22111 11234432 334455677777788776 332211 11 1233
Q ss_pred EEEEEEecCCCEEEEEeCCCeEEEEECCCCc--eeEEEeec------CC---cceEEEEECCCCCEEEEEeC--------
Q 043172 395 VRSLAFADDGKQLLSSGGDGQVYHWDLRTRT--CIHRAVDE------GC---INGTALCTSPDGTFFAAGSD-------- 455 (564)
Q Consensus 395 V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~--~~~~~~~~------~~---~~i~~l~~sp~g~~lasgs~-------- 455 (564)
. . .+++..++..+. +.|.+.|+.+.. .+..+... .. .....++++|+++.++++..
T Consensus 217 ~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~ 291 (368)
T 1mda_H 217 A---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLA 291 (368)
T ss_dssp E---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTS
T ss_pred c---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccc
Confidence 3 3 666777776677 999999997532 22222211 00 11122689999987776543
Q ss_pred -CCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEE
Q 043172 456 -SGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRC 534 (564)
Q Consensus 456 -dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~ 534 (564)
.+.+.++|+.+. +.+.++... .....|+|+|||++++++....++.|.++|+.+++++..++... ....
T Consensus 292 ~~~~~~ViD~~t~-----~vv~~i~vg-~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~----~P~~ 361 (368)
T 1mda_H 292 AAENTSSVTASVG-----QTSGPISNG-HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDK----GPES 361 (368)
T ss_dssp CEEEEEEEESSSC-----CEEECCEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCS----CCCE
T ss_pred cCCCEEEEECCCC-----eEEEEEECC-CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCC----CCCE
Confidence 235669999987 777777643 36889999999986655554228999999999999999888764 3456
Q ss_pred EEEeC
Q 043172 535 LDFSP 539 (564)
Q Consensus 535 l~fsp 539 (564)
+++.+
T Consensus 362 i~~~~ 366 (368)
T 1mda_H 362 LSVQN 366 (368)
T ss_dssp EECCC
T ss_pred EEeec
Confidence 66654
No 227
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.24 E-value=2.3e-08 Score=102.25 Aligned_cols=265 Identities=12% Similarity=0.089 Sum_probs=167.2
Q ss_pred CCCEEEEEeCCCcEEEEEecCCCCceeEEEEeC---------CcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeee
Q 043172 273 NAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLE---------DCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKI 343 (564)
Q Consensus 273 dg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~---------~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~ 343 (564)
.+..|++++.++.|..||...+ ..+-..... ...+.+ ....++..|++++.++.|+.+|..+|+..-.
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG--~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~ 128 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDG--KEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSDGTVAWQ 128 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTC--CEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCC--ceeeeecCccccccccccCccccc-CceEeCCEEEEEcCCCEEEEEECCCCCEEEE
Confidence 3667888888899999988643 344333332 122322 2223566888888999999999999987543
Q ss_pred ccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeeecCcEE------EEEEecCCCEEEEEeCCCeEE
Q 043172 344 GPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLKMNGTVR------SLAFADDGKQLLSSGGDGQVY 417 (564)
Q Consensus 344 ~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~~~~~V~------~l~~spdg~~l~s~s~dg~V~ 417 (564)
..+..... ....+. +..+++++.++.|..+|..+++.+..+.....+. ..... +..+++++.++.|+
T Consensus 129 ~~~~~~~~---~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~ 201 (376)
T 3q7m_A 129 TKVAGEAL---SRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVS 201 (376)
T ss_dssp EECSSCCC---SCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEE
T ss_pred EeCCCceE---cCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEE
Confidence 33322111 111121 4577888889999999999999888776443332 22222 45678888899999
Q ss_pred EEECCCCceeEEEeecCCcce---EE---EEECC--CCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEE
Q 043172 418 HWDLRTRTCIHRAVDEGCING---TA---LCTSP--DGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMK 489 (564)
Q Consensus 418 lwD~~~~~~~~~~~~~~~~~i---~~---l~~sp--~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~ 489 (564)
.+|..+++.+........... .. +...| .+..+++++.+|.|..+|..++ +.+..... .....+.
T Consensus 202 ~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG-----~~~w~~~~--~~~~~~~ 274 (376)
T 3q7m_A 202 AVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSG-----QIMWKREL--GSVNDFI 274 (376)
T ss_dssp EEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTC-----CEEEEECC--CCEEEEE
T ss_pred EEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCC-----cEEeeccC--CCCCCce
Confidence 999999998776653321100 00 00111 2457888888999999999886 55544432 2233444
Q ss_pred EcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCCCC
Q 043172 490 FNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNHYH 562 (564)
Q Consensus 490 fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~~~ 562 (564)
. ++..|++++. ++.|..+|..+++..-..+.... ..+..+.. .+..|++++.+|.|++|+..+++
T Consensus 275 ~--~~~~l~~~~~--~g~l~~~d~~tG~~~w~~~~~~~--~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~ 339 (376)
T 3q7m_A 275 V--DGNRIYLVDQ--NDRVMALTIDGGVTLWTQSDLLH--RLLTSPVL--YNGNLVVGDSEGYLHWINVEDGR 339 (376)
T ss_dssp E--ETTEEEEEET--TCCEEEEETTTCCEEEEECTTTT--SCCCCCEE--ETTEEEEECTTSEEEEEETTTCC
T ss_pred E--ECCEEEEEcC--CCeEEEEECCCCcEEEeecccCC--CcccCCEE--ECCEEEEEeCCCeEEEEECCCCc
Confidence 3 3567777777 78999999999887644432111 11222233 24678888999999999987654
No 228
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.23 E-value=6.9e-10 Score=122.83 Aligned_cols=274 Identities=12% Similarity=0.047 Sum_probs=178.0
Q ss_pred CCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCc-----------CeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceee
Q 043172 274 AQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDC-----------PVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADK 342 (564)
Q Consensus 274 g~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~-----------~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~ 342 (564)
+..|++++.++.|.-+|..+ ...+-....... ....+++ .+..|++++.++.|+.+|..+|+..-
T Consensus 77 ~g~vyv~~~~~~v~AlD~~t--G~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W 152 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRT--GNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVW 152 (677)
T ss_dssp TTEEEEECGGGCEEEEETTT--TEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEECCCCeEEEEECCC--CcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEe
Confidence 45677777778888877753 334444432211 0112223 46788888999999999999998754
Q ss_pred ecccc-ccCC-cceEE-EEEcCCCCEEEEEeC------CCeEEEEECCCCcEEEEeeecCc-------------------
Q 043172 343 IGPLV-GREE-KSLEF-FEVSPDSSVIAFVGN------EGYILLVSSKTKELIGTLKMNGT------------------- 394 (564)
Q Consensus 343 ~~~~~-~~~~-~~v~~-~~~spdg~~la~~~~------dg~I~lwd~~t~~~~~~~~~~~~------------------- 394 (564)
..... .... ..+.. ..+ .+..+++++. +|.|+.||..+++.+..+.....
T Consensus 153 ~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~ 230 (677)
T 1kb0_A 153 HQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWD 230 (677)
T ss_dssp EEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSC
T ss_pred eecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccccc
Confidence 33322 1000 01111 111 2345555543 69999999999999887762111
Q ss_pred --------------EEEEEEecCCCEEEEEeCCC-------------------eEEEEECCCCceeEEEeecCC------
Q 043172 395 --------------VRSLAFADDGKQLLSSGGDG-------------------QVYHWDLRTRTCIHRAVDEGC------ 435 (564)
Q Consensus 395 --------------V~~l~~spdg~~l~s~s~dg-------------------~V~lwD~~~~~~~~~~~~~~~------ 435 (564)
...++++|++..|++++.++ .|..+|..+++.+..+...+.
T Consensus 231 ~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~ 310 (677)
T 1kb0_A 231 PSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYT 310 (677)
T ss_dssp GGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCC
T ss_pred ccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccc
Confidence 12578889888898887764 599999999998877664221
Q ss_pred --cceEEEEECCCC---CEEEEEeCCCcEEEEeCCcccCCcceeeEEccccc-----------cce--------------
Q 043172 436 --INGTALCTSPDG---TFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLT-----------TKV-------------- 485 (564)
Q Consensus 436 --~~i~~l~~sp~g---~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~-----------~~I-------------- 485 (564)
.....+....+| ..+++++.+|.|+++|..++ +++..+.... .++
T Consensus 311 ~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG-----~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 385 (677)
T 1kb0_A 311 STQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNG-----KFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDA 385 (677)
T ss_dssp CCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTC-----CEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEEC
T ss_pred cCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCC-----CEeccccccccCcccccCCCCceeeccccCcCCCccEE
Confidence 112223333467 68899999999999999987 5544332110 001
Q ss_pred ----------eEEEEcCCCcEEEEEecC-----------------------------------------CCCeEEEEEcC
Q 043172 486 ----------DFMKFNNDAQILAICSTM-----------------------------------------KKNSLKLIHIP 514 (564)
Q Consensus 486 ----------~~l~fspdg~~La~~s~~-----------------------------------------~d~~I~lwdl~ 514 (564)
..++|+|++.++++.+.. ..+.|..||+.
T Consensus 386 ~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~ 465 (677)
T 1kb0_A 386 VPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPV 465 (677)
T ss_dssp SSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETT
T ss_pred CcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCC
Confidence 257899998888876531 02789999999
Q ss_pred CCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCCCC
Q 043172 515 SYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNHYH 562 (564)
Q Consensus 515 s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~~~ 562 (564)
+++..-.++.. ..+.+..++..+.++++++.+|.+++||+.+.+
T Consensus 466 tG~~~W~~~~~----~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~ 509 (677)
T 1kb0_A 466 AQKAAWSVEHV----SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGE 509 (677)
T ss_dssp TTEEEEEEEES----SSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred CCcEEeecCCC----CCCcCcceEeCCCEEEEECCCCcEEEEECCCCc
Confidence 99876554432 233445577788899999999999999998765
No 229
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.20 E-value=2.2e-13 Score=139.88 Aligned_cols=256 Identities=13% Similarity=0.051 Sum_probs=139.3
Q ss_pred CCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCc
Q 043172 273 NAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEK 352 (564)
Q Consensus 273 dg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~ 352 (564)
++.+|++++.|+.|..||...+ ..+..+.. .++.+..+.+++..+++++.++.|+.||..+|+...........
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG--~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~-- 81 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTG--SIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPE-- 81 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTC--CEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHH--
T ss_pred eCCEEEEEcCCCEEEEEECCCC--CEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcc--
Confidence 5778999999999999998743 45555554 45666666677777877789999999999888753322211100
Q ss_pred ceE-EEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEe
Q 043172 353 SLE-FFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAV 431 (564)
Q Consensus 353 ~v~-~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~ 431 (564)
.+. ...+. .+..+++++.++.|+.||..+|+.+..+.... ...++|++..|++++.++.|+.||..+++.+..+.
T Consensus 82 ~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~---~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 157 (369)
T 2hz6_A 82 LVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF---ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNAT 157 (369)
T ss_dssp HHTTCSCC------CCCCEEEEEEEEECCC-------------------------EEEEEEEEEEECCCSSSSSCCCEEE
T ss_pred ccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC---cccccccCCEEEEEecCCEEEEEECCCCCEEEeEe
Confidence 000 00111 34567778889999999999999887776433 23456788889999999999999999998766554
Q ss_pred ecCCcceEEEEECCCC---CEEEEEeCCCcEEEEeCCcccCCcceeeEEcccccccee-EEEEcCCCcEE----EEEecC
Q 043172 432 DEGCINGTALCTSPDG---TFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVD-FMKFNNDAQIL----AICSTM 503 (564)
Q Consensus 432 ~~~~~~i~~l~~sp~g---~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~-~l~fspdg~~L----a~~s~~ 503 (564)
... ....+++++. ..+++++.+|.|..||..++ +.+.... ...++. ...++++|... +++
T Consensus 158 ~~~---~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG-----~~~W~~~-~~~pv~~~~~~~~dg~~~v~~~~~~--- 225 (369)
T 2hz6_A 158 YFD---YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESG-----DVLWIQN-YASPVVAFYVWQREGLRKVMHINVA--- 225 (369)
T ss_dssp EEE---ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTC-----CEEEEEE-CSSCEEEEEECTTSSCEEECCEEEE---
T ss_pred ccc---ccCccccCCccccceEEEECCCCEEEEEECCCC-----cEEEEec-CCCceEEEEEecCCceEeccceeec---
Confidence 221 1223333332 46777899999999999887 6665554 234443 34455666432 112
Q ss_pred CCCeEEEEEcCCCc----eeccCCCCCCCCCCcEEEEEeC--CCCEEEEEcCCCeEEEEEcC
Q 043172 504 KKNSLKLIHIPSYN----VFSNWPPANRNLQYPRCLDFSP--GGGFMAVGNAAGKVFLYKLN 559 (564)
Q Consensus 504 ~d~~I~lwdl~s~~----~~~~~~~~~~~~~~V~~l~fsp--dg~~Lasgs~dG~V~lw~l~ 559 (564)
++.++.++..+++ ..-.+... +.+. +| .+..|++++.+|.|+.++..
T Consensus 226 -~~~l~~ld~~tG~~~~~~~W~~~~~----~~~~----sp~~~~g~lyv~~~~G~l~al~~~ 278 (369)
T 2hz6_A 226 -VETLRYLTFMSGEVGRITKWKYPFP----KETE----AKSKLTPTLYVGKYSTSLYASPSM 278 (369)
T ss_dssp -HHHHHHHHHHHHHHHHHHTSCCCCC----CHHH----HHHHSEEEECBEECSSCEECCEEE
T ss_pred -ccceeeeehhcCCcccceeeeeccC----cccc----ccccccceEEEecccCCEEecCcc
Confidence 3456667776665 33222211 1121 22 34567788888888887764
No 230
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.18 E-value=7.2e-09 Score=114.65 Aligned_cols=274 Identities=11% Similarity=0.069 Sum_probs=181.9
Q ss_pred CCCEEEEEeCCCcEEEEEecCCCCceeEEEEeC-C----cCeEEEEEeeCCCEEEEEeC------CCeEEEEECCCCcee
Q 043172 273 NAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLE-D----CPVRKASFLPDGSQAIIAGR------RKFFYSLDLVKAKAD 341 (564)
Q Consensus 273 dg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~-~----~~I~~l~fspdg~~l~s~~~------dg~i~iwdl~~~~~~ 341 (564)
.+..|++++.|+.|..+|..+ +..+-.+... . ..+.+.-.. .+..+++++. ++.|+.||..+|+..
T Consensus 127 ~~~~v~v~~~dg~l~alD~~t--G~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~ 203 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAAT--GKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERK 203 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTT--CCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred ECCEEEEEcCCCEEEEEECCC--CCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEE
Confidence 356788888899999998864 3455555443 1 122211111 2446666553 789999999999865
Q ss_pred eeccccccC-----------------------------CcceEEEEEcCCCCEEEEEeCCC-------------------
Q 043172 342 KIGPLVGRE-----------------------------EKSLEFFEVSPDSSVIAFVGNEG------------------- 373 (564)
Q Consensus 342 ~~~~~~~~~-----------------------------~~~v~~~~~spdg~~la~~~~dg------------------- 373 (564)
-........ ......++++|++.+++++..++
T Consensus 204 W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~ 283 (677)
T 1kb0_A 204 WRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLA 283 (677)
T ss_dssp EEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTT
T ss_pred EEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeE
Confidence 322211110 00123578899999998887664
Q ss_pred eEEEEECCCCcEEEEeee--c--------CcEEEEEEecCC---CEEEEEeCCCeEEEEECCCCceeEEEeecCC-----
Q 043172 374 YILLVSSKTKELIGTLKM--N--------GTVRSLAFADDG---KQLLSSGGDGQVYHWDLRTRTCIHRAVDEGC----- 435 (564)
Q Consensus 374 ~I~lwd~~t~~~~~~~~~--~--------~~V~~l~~spdg---~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~----- 435 (564)
.|..+|..+++.+..+.. . ....-+....+| ..|++++.+|.|+++|..+++.+..+.....
T Consensus 284 sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~ 363 (677)
T 1kb0_A 284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASG 363 (677)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred EEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccc
Confidence 599999999999888762 1 122333444577 6788999999999999999998876542210
Q ss_pred -----cc------------------------eEEEEECCCCCEEEEEeCC------------------------------
Q 043172 436 -----IN------------------------GTALCTSPDGTFFAAGSDS------------------------------ 456 (564)
Q Consensus 436 -----~~------------------------i~~l~~sp~g~~lasgs~d------------------------------ 456 (564)
.. -..++++|++.++++.+.+
T Consensus 364 ~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g 443 (677)
T 1kb0_A 364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTA 443 (677)
T ss_dssp ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCC
T ss_pred cCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccc
Confidence 00 0156888988888776432
Q ss_pred -------------CcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCC
Q 043172 457 -------------GIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWP 523 (564)
Q Consensus 457 -------------g~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~ 523 (564)
|.|..||+.++ +.+..+. +..++....+...+.++++++. ++.+++||+.+++++..+.
T Consensus 444 ~~~~~~~~~~~~~g~l~A~D~~tG-----~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~--dg~l~a~D~~tG~~lw~~~ 515 (677)
T 1kb0_A 444 KFFNAEPPKSKPFGRLLAWDPVAQ-----KAAWSVE-HVSPWNGGTLTTAGNVVFQGTA--DGRLVAYHAATGEKLWEAP 515 (677)
T ss_dssp EEECSSCCCSCCEEEEEEEETTTT-----EEEEEEE-ESSSCCCCEEEETTTEEEEECT--TSEEEEEETTTCCEEEEEE
T ss_pred cccccccCCCCCccEEEEEeCCCC-----cEEeecC-CCCCCcCcceEeCCCEEEEECC--CCcEEEEECCCCceeeeee
Confidence 67999999887 6666655 3344555667778888888876 9999999999999987776
Q ss_pred CCCCCCCCcEEEEEeCCCCEE-EEEcC----------------CCeEEEEEcC
Q 043172 524 PANRNLQYPRCLDFSPGGGFM-AVGNA----------------AGKVFLYKLN 559 (564)
Q Consensus 524 ~~~~~~~~V~~l~fspdg~~L-asgs~----------------dG~V~lw~l~ 559 (564)
...... .+-+.|+++|+.+ ++.+. .+.+.+|.|.
T Consensus 516 ~~~~~~--~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~ 566 (677)
T 1kb0_A 516 TGTGVV--AAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVG 566 (677)
T ss_dssp CSSCCC--SCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEET
T ss_pred CCCCcc--cCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEecc
Confidence 554322 3346677888744 43222 3678888775
No 231
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.18 E-value=3.1e-09 Score=117.87 Aligned_cols=274 Identities=12% Similarity=0.069 Sum_probs=174.3
Q ss_pred CCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCc----------Ce-EEEEEeeCCCEEEEEeCCCeEEEEECCCCceee
Q 043172 274 AQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDC----------PV-RKASFLPDGSQAIIAGRRKFFYSLDLVKAKADK 342 (564)
Q Consensus 274 g~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~----------~I-~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~ 342 (564)
+..|++++.++.|.-+|..+ +..+-....... .+ ..++. .+..|++++.++.|+.+|..+|+..-
T Consensus 70 ~g~vyv~~~~~~v~AlD~~t--G~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W 145 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARD--GRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAW 145 (689)
T ss_dssp TTEEEEECGGGCEEEEETTT--CCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEcCCCeEEEEECCC--CceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEee
Confidence 55777777788888888763 334444432211 01 11222 45688889999999999999998753
Q ss_pred eccccccCCcceEEEEEcC---CCCEEEEEe------CCCeEEEEECCCCcEEEEeee-c-C------------------
Q 043172 343 IGPLVGREEKSLEFFEVSP---DSSVIAFVG------NEGYILLVSSKTKELIGTLKM-N-G------------------ 393 (564)
Q Consensus 343 ~~~~~~~~~~~v~~~~~sp---dg~~la~~~------~dg~I~lwd~~t~~~~~~~~~-~-~------------------ 393 (564)
......... ....+..+| ++ .+++++ .+|.|..||..+|+.+..+.. . .
T Consensus 146 ~~~~~~~~~-~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~ 223 (689)
T 1yiq_A 146 SVDTRADHK-RSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWF 223 (689)
T ss_dssp EEECCSCTT-SCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCC
T ss_pred eecCcCCCC-CCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccC
Confidence 322210100 000111112 34 444443 268999999999998877652 1 0
Q ss_pred ------------cEEEEEEecCCCEEEEEeCCCe-------------------EEEEECCCCceeEEEeecCC-------
Q 043172 394 ------------TVRSLAFADDGKQLLSSGGDGQ-------------------VYHWDLRTRTCIHRAVDEGC------- 435 (564)
Q Consensus 394 ------------~V~~l~~spdg~~l~s~s~dg~-------------------V~lwD~~~~~~~~~~~~~~~------- 435 (564)
....+++.|+...|++++.++. |+.||..+++.+-.+...+.
T Consensus 224 g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~ 303 (689)
T 1yiq_A 224 GDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTA 303 (689)
T ss_dssp SSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCC
T ss_pred CceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccC
Confidence 0125788898889999888764 99999999999877764211
Q ss_pred -cceEEEEECCCCC---EEEEEeCCCcEEEEeCCcccCCcceeeEEcccc----------------------------c-
Q 043172 436 -INGTALCTSPDGT---FFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENL----------------------------T- 482 (564)
Q Consensus 436 -~~i~~l~~sp~g~---~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~----------------------------~- 482 (564)
.......+..+|+ .++.++.+|.++++|..++ +++...... .
T Consensus 304 ~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG-----~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~ 378 (689)
T 1yiq_A 304 TQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATG-----ELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKR 378 (689)
T ss_dssp CSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTC-----CEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSC
T ss_pred CCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCC-----CEeccccccccccccccCccCCCcccchhhccccCCCCe
Confidence 1111122223554 7889999999999999887 444211100 0
Q ss_pred ----------cceeEEEEcCCCcEEEEEecC-------------------------------------------CCCeEE
Q 043172 483 ----------TKVDFMKFNNDAQILAICSTM-------------------------------------------KKNSLK 509 (564)
Q Consensus 483 ----------~~I~~l~fspdg~~La~~s~~-------------------------------------------~d~~I~ 509 (564)
..-..++|+|+..++++.+.. .++.|+
T Consensus 379 ~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~ 458 (689)
T 1yiq_A 379 NLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLI 458 (689)
T ss_dssp EEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEE
T ss_pred eEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEE
Confidence 001237899998888876431 037799
Q ss_pred EEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCCCC
Q 043172 510 LIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNHYH 562 (564)
Q Consensus 510 lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~~~ 562 (564)
.||+.+++..-.++... .+....++..+.++++|+.||.|+.||..+.+
T Consensus 459 A~D~~tG~~~W~~~~~~----~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~ 507 (689)
T 1yiq_A 459 AWDPVKQQAAWEVPYVT----IFNGGTLSTAGNLVFEGSADGRVIAYAADTGE 507 (689)
T ss_dssp EEETTTTEEEEEEEESS----SCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred EEECCCCCeEeEccCCC----CccCccceECCCEEEEECCCCcEEEEECCCCc
Confidence 99999998765544332 22333566788899999999999999998765
No 232
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.15 E-value=7.9e-08 Score=98.15 Aligned_cols=261 Identities=9% Similarity=0.039 Sum_probs=162.7
Q ss_pred CCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCC-
Q 043172 273 NAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREE- 351 (564)
Q Consensus 273 dg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~- 351 (564)
++..+++++.++.|..+|...+ ..+-.............. .+..+++++.++.|+.+|..+|+..-.........
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG--~~~W~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~ 177 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDG--TVAWQTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLS 177 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTC--CEEEEEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC----
T ss_pred eCCEEEEEcCCCEEEEEECCCC--CEEEEEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCcee
Confidence 3567778888999999987643 344444433222222222 24578888889999999999998654322211110
Q ss_pred -cceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeeecCcE--------EEEEEec--CCCEEEEEeCCCeEEEEE
Q 043172 352 -KSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLKMNGTV--------RSLAFAD--DGKQLLSSGGDGQVYHWD 420 (564)
Q Consensus 352 -~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~~~~~V--------~~l~~sp--dg~~l~s~s~dg~V~lwD 420 (564)
.......+. +..+++++.++.|..+|..+++.+.......+. ..+...| .+..+++++.++.|+.+|
T Consensus 178 ~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d 255 (376)
T 3q7m_A 178 LRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALD 255 (376)
T ss_dssp -CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEE
T ss_pred ecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEE
Confidence 000111222 456777888999999999999988776632110 0011111 246788888899999999
Q ss_pred CCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEcccc-ccceeEEEEcCCCcEEEE
Q 043172 421 LRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENL-TTKVDFMKFNNDAQILAI 499 (564)
Q Consensus 421 ~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~-~~~I~~l~fspdg~~La~ 499 (564)
..+++.+....... ...+.. .+..|++++.+|.|..+|..++ +.+...... ...+..+.. .+..|++
T Consensus 256 ~~tG~~~w~~~~~~---~~~~~~--~~~~l~~~~~~g~l~~~d~~tG-----~~~w~~~~~~~~~~~~~~~--~~~~l~v 323 (376)
T 3q7m_A 256 LRSGQIMWKRELGS---VNDFIV--DGNRIYLVDQNDRVMALTIDGG-----VTLWTQSDLLHRLLTSPVL--YNGNLVV 323 (376)
T ss_dssp TTTCCEEEEECCCC---EEEEEE--ETTEEEEEETTCCEEEEETTTC-----CEEEEECTTTTSCCCCCEE--ETTEEEE
T ss_pred CCCCcEEeeccCCC---CCCceE--ECCEEEEEcCCCeEEEEECCCC-----cEEEeecccCCCcccCCEE--ECCEEEE
Confidence 99998876554322 233433 3567888889999999999887 555544321 222233333 2456777
Q ss_pred EecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEE
Q 043172 500 CSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYK 557 (564)
Q Consensus 500 ~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~ 557 (564)
++. ++.|.++|..+++....+...... ....... .+..|++++.+|.|+.|+
T Consensus 324 ~~~--~g~l~~~d~~tG~~~~~~~~~~~~--~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 324 GDS--EGYLHWINVEDGRFVAQQKVDSSG--FQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp ECT--TSEEEEEETTTCCEEEEEECCTTC--BCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred EeC--CCeEEEEECCCCcEEEEEecCCCc--ceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 777 899999999999877654432211 1111222 246788899999999987
No 233
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.15 E-value=1.2e-07 Score=91.93 Aligned_cols=253 Identities=9% Similarity=-0.039 Sum_probs=160.0
Q ss_pred CCEEEEEeCCCcEEEEEecCCCCce---eEEEEeCCcCeEEEEEeeCCCEEEEEe-CCCeEEEEECCCCceeeecccccc
Q 043172 274 AQLLLVAGLDRRLRFFQIDGKRNTK---IQSIFLEDCPVRKASFLPDGSQAIIAG-RRKFFYSLDLVKAKADKIGPLVGR 349 (564)
Q Consensus 274 g~~l~s~s~dg~I~lwd~~~~~~~~---~~~~~~~~~~I~~l~fspdg~~l~s~~-~dg~i~iwdl~~~~~~~~~~~~~~ 349 (564)
|++|+.+.. +.|+.+++++..... ...+......+..++|++++..|+.+. ..+.|.++++.++....+. ..
T Consensus 1 ~~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~--~~- 76 (267)
T 1npe_A 1 GTHLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTII--RQ- 76 (267)
T ss_dssp CEEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEE--CT-
T ss_pred CcEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEE--EC-
Confidence 345666553 478888887643221 111222234578999999877777665 5689999999876543221 11
Q ss_pred CCcceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCcEEEEeee-cCcEEEEEEecCCCEEEEEeC---CCeEEEEECCCC
Q 043172 350 EEKSLEFFEVSPDSSVIAFVG-NEGYILLVSSKTKELIGTLKM-NGTVRSLAFADDGKQLLSSGG---DGQVYHWDLRTR 424 (564)
Q Consensus 350 ~~~~v~~~~~spdg~~la~~~-~dg~I~lwd~~t~~~~~~~~~-~~~V~~l~~spdg~~l~s~s~---dg~V~lwD~~~~ 424 (564)
.......++++|++..|+++. ..+.|.++++........... ......++++|++..|+.+.. .+.|+.+++...
T Consensus 77 ~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~ 156 (267)
T 1npe_A 77 DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT 156 (267)
T ss_dssp TCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC
T ss_pred CCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC
Confidence 112578899999766665554 468999999875433222222 246789999997666666554 368999988643
Q ss_pred ceeEEEeecCCcceEEEEECCCCCEEE-EEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecC
Q 043172 425 TCIHRAVDEGCINGTALCTSPDGTFFA-AGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTM 503 (564)
Q Consensus 425 ~~~~~~~~~~~~~i~~l~~sp~g~~la-sgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~ 503 (564)
....+..........+++++++.+|+ +-...+.|.+++.... .....+... .....+++ ++..|+++...
T Consensus 157 -~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~-----~~~~~~~~~-~~P~gi~~--d~~~lyva~~~ 227 (267)
T 1npe_A 157 -NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP-----GRRKVLEGL-QYPFAVTS--YGKNLYYTDWK 227 (267)
T ss_dssp -CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE-----EEEEEEECC-CSEEEEEE--ETTEEEEEETT
T ss_pred -CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC-----ceEEEecCC-CCceEEEE--eCCEEEEEECC
Confidence 33333322223468899999876554 4456789999998753 222222222 23355665 35566666643
Q ss_pred CCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCC
Q 043172 504 KKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGG 542 (564)
Q Consensus 504 ~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~ 542 (564)
.+.|..++..+++....++... ......+++.|++.
T Consensus 228 -~~~v~~~d~~~g~~~~~i~~g~--~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 228 -TNSVIAMDLAISKEMDTFHPHK--QTRLYGITIALSQC 263 (267)
T ss_dssp -TTEEEEEETTTTEEEEEECCSS--CCCCCCEEEECSCC
T ss_pred -CCeEEEEeCCCCCceEEEcccc--ccccceeeecCccC
Confidence 6899999999998888776542 12367788888865
No 234
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.14 E-value=2.2e-09 Score=113.97 Aligned_cols=238 Identities=13% Similarity=0.087 Sum_probs=163.6
Q ss_pred CCCCEEEEEeC-CCcEEEEEecCCCCceeEEEEeC-CcCeEEEEE-e-eCCCEEEEEeC------------------CCe
Q 043172 272 RNAQLLLVAGL-DRRLRFFQIDGKRNTKIQSIFLE-DCPVRKASF-L-PDGSQAIIAGR------------------RKF 329 (564)
Q Consensus 272 pdg~~l~s~s~-dg~I~lwd~~~~~~~~~~~~~~~-~~~I~~l~f-s-pdg~~l~s~~~------------------dg~ 329 (564)
|||++|++... +..|.+.|++.. +....+... ...+..+++ + |++.++++++. ++.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~--~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~ 176 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVM--KCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV 176 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTT--EEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCc--eEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCce
Confidence 48888877765 557999988843 444433332 245788888 5 99999998852 357
Q ss_pred EEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCC------------------------------------
Q 043172 330 FYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEG------------------------------------ 373 (564)
Q Consensus 330 i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg------------------------------------ 373 (564)
+.++|..+.++.....+.+. ...++++|+|+++++++.+.
T Consensus 177 vtvID~~t~~v~~qI~Vgg~----pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~ 252 (595)
T 1fwx_A 177 FTAVDADKWEVAWQVLVSGN----LDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQE 252 (595)
T ss_dssp EEEEETTTTEEEEEEEESSC----CCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEE
T ss_pred EEEEECCCCeEEEEEEeCCC----ccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeE
Confidence 99999999877554333332 34688999999999888543
Q ss_pred --eEEEEECCC--CcE-EEEeeecCcEEEEEEecCCCEEEEEeC-CCeEEEEECCCCc------------eeEEEeecCC
Q 043172 374 --YILLVSSKT--KEL-IGTLKMNGTVRSLAFADDGKQLLSSGG-DGQVYHWDLRTRT------------CIHRAVDEGC 435 (564)
Q Consensus 374 --~I~lwd~~t--~~~-~~~~~~~~~V~~l~~spdg~~l~s~s~-dg~V~lwD~~~~~------------~~~~~~~~~~ 435 (564)
.|.+.|..+ +.. +..+.......++.++|||+++++++. +.+|.++|+.+.+ .+... .-+
T Consensus 253 i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v--~vG 330 (595)
T 1fwx_A 253 LNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP--ELG 330 (595)
T ss_dssp ETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC--BCC
T ss_pred ECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc--CCC
Confidence 377788877 444 566665567789999999998887764 6899999998653 22222 233
Q ss_pred cceEEEEECCCCCEEEEEeCCCcEEEEeCCccc-----CCcceeeEEccccccc-----eeEEEEcCCCcEEEEEecCCC
Q 043172 436 INGTALCTSPDGTFFAAGSDSGIVNVYNRQEFL-----GGKRKPIKTIENLTTK-----VDFMKFNNDAQILAICSTMKK 505 (564)
Q Consensus 436 ~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~-----~~~~~~~~~~~~~~~~-----I~~l~fspdg~~La~~s~~~d 505 (564)
.....++|+|+|...++..-+++|.+|++.... ......+.++..|..+ -..+.++|||++|+++.....
T Consensus 331 ~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~sk 410 (595)
T 1fwx_A 331 LGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSK 410 (595)
T ss_dssp SCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCT
T ss_pred CCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCc
Confidence 456899999999444556679999999987620 0112455566544332 123456899999999887653
Q ss_pred CeE-----------EEEEcCCCc
Q 043172 506 NSL-----------KLIHIPSYN 517 (564)
Q Consensus 506 ~~I-----------~lwdl~s~~ 517 (564)
..+ .|+|+..++
T Consensus 411 dr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 411 DRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp TSSCCCCSSCCEEEEEEECSSSS
T ss_pred cccccCCCCCCCcceEEEcCCCc
Confidence 444 888886443
No 235
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.12 E-value=1.1e-08 Score=98.89 Aligned_cols=195 Identities=14% Similarity=0.146 Sum_probs=136.7
Q ss_pred eEEEEEcCCCCEEEEEeC--CCeEEEEECCCCcEEEEeeecC--cEEEEEEecCCCEEEEEe-CCCeEEEEECCCCceeE
Q 043172 354 LEFFEVSPDSSVIAFVGN--EGYILLVSSKTKELIGTLKMNG--TVRSLAFADDGKQLLSSG-GDGQVYHWDLRTRTCIH 428 (564)
Q Consensus 354 v~~~~~spdg~~la~~~~--dg~I~lwd~~t~~~~~~~~~~~--~V~~l~~spdg~~l~s~s-~dg~V~lwD~~~~~~~~ 428 (564)
...+.|+|++.++++.+. .+.|.++|+.+++.+..+.... ....+++. +..|+.++ .++.|.++|..+.+.+.
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~ 100 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIK 100 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEE
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEE
Confidence 578999998755555443 5899999999999999887433 23345554 55565554 57899999999999998
Q ss_pred EEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEcccc-----ccceeEEEEcCCCcEEEEEecC
Q 043172 429 RAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENL-----TTKVDFMKFNNDAQILAICSTM 503 (564)
Q Consensus 429 ~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~-----~~~I~~l~fspdg~~La~~s~~ 503 (564)
++..... .... ++++|+.++++..++.|.++|..+. +.+.++.-. ...++.+.|. +|. |++....
T Consensus 101 ~i~~g~~-~g~g--lt~Dg~~l~vs~gs~~l~viD~~t~-----~v~~~I~Vg~~~~p~~~~nele~~-dg~-lyvn~~~ 170 (266)
T 2iwa_A 101 NFTHQMK-DGWG--LATDGKILYGSDGTSILYEIDPHTF-----KLIKKHNVKYNGHRVIRLNELEYI-NGE-VWANIWQ 170 (266)
T ss_dssp EEECCSS-SCCE--EEECSSSEEEECSSSEEEEECTTTC-----CEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETT
T ss_pred EEECCCC-CeEE--EEECCCEEEEECCCCeEEEEECCCC-----cEEEEEEECCCCcccccceeEEEE-CCE-EEEecCC
Confidence 8764412 2233 4457776666667889999999886 666655421 1236678888 674 4444432
Q ss_pred CCCeEEEEEcCCCceeccCCCCC----------CCCCCcEEEEEeCCCCEE-EEEcCCCeEEEEEcCCC
Q 043172 504 KKNSLKLIHIPSYNVFSNWPPAN----------RNLQYPRCLDFSPGGGFM-AVGNAAGKVFLYKLNHY 561 (564)
Q Consensus 504 ~d~~I~lwdl~s~~~~~~~~~~~----------~~~~~V~~l~fspdg~~L-asgs~dG~V~lw~l~~~ 561 (564)
.+.|.+.|..++++...++... ......+.++|+|+++.| +++...++|+..++...
T Consensus 171 -~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 171 -TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp -SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred -CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 7899999999999988776531 112356899999998755 55657888988887543
No 236
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.12 E-value=1.4e-08 Score=112.60 Aligned_cols=259 Identities=15% Similarity=0.136 Sum_probs=167.3
Q ss_pred CCEEEEEeCCCcEEEEEecCCCCceeEEEEeC--C---cCeEEEEEeeCCCEEEEEe------CCCeEEEEECCCCceee
Q 043172 274 AQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLE--D---CPVRKASFLPDGSQAIIAG------RRKFFYSLDLVKAKADK 342 (564)
Q Consensus 274 g~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~--~---~~I~~l~fspdg~~l~s~~------~dg~i~iwdl~~~~~~~ 342 (564)
+..|++++.|+.|..+|..++ ..+-..... . ..+.+.-...++ .+++++ .++.|+.||..+|+..-
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG--~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W 197 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTG--QRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAW 197 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTC--CEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred CCEEEEEccCCEEEEEECCCC--CEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEE
Confidence 567888888999999988643 344444332 1 111111011144 555543 36899999999998643
Q ss_pred eccc-ccc---------------------------CCcceEEEEEcCCCCEEEEEeCCCe-------------------E
Q 043172 343 IGPL-VGR---------------------------EEKSLEFFEVSPDSSVIAFVGNEGY-------------------I 375 (564)
Q Consensus 343 ~~~~-~~~---------------------------~~~~v~~~~~spdg~~la~~~~dg~-------------------I 375 (564)
.... .+. .......++++|++.+++++..++. |
T Consensus 198 ~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v 277 (689)
T 1yiq_A 198 RFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSI 277 (689)
T ss_dssp EEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEE
T ss_pred EecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeE
Confidence 2211 100 0001125788998899999887764 9
Q ss_pred EEEECCCCcEEEEeee---c-------CcEEEEEEecCCC---EEEEEeCCCeEEEEECCCCceeEEEeecC--------
Q 043172 376 LLVSSKTKELIGTLKM---N-------GTVRSLAFADDGK---QLLSSGGDGQVYHWDLRTRTCIHRAVDEG-------- 434 (564)
Q Consensus 376 ~lwd~~t~~~~~~~~~---~-------~~V~~l~~spdg~---~l~s~s~dg~V~lwD~~~~~~~~~~~~~~-------- 434 (564)
..||..+|+.+..+.. . ..+.......+|+ .|+.++.+|.|+++|..+++.+.......
T Consensus 278 ~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~ 357 (689)
T 1yiq_A 278 VAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMD 357 (689)
T ss_dssp EEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEE
T ss_pred EEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccC
Confidence 9999999999887762 1 1222223333565 78889999999999999999874332111
Q ss_pred ------------------------------CcceEEEEECCCCCEEEEEeC-----------------------------
Q 043172 435 ------------------------------CINGTALCTSPDGTFFAAGSD----------------------------- 455 (564)
Q Consensus 435 ------------------------------~~~i~~l~~sp~g~~lasgs~----------------------------- 455 (564)
...-..++++|+..+|++++.
T Consensus 358 ~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 437 (689)
T 1yiq_A 358 MKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTG 437 (689)
T ss_dssp TTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEEC
T ss_pred ccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcccc
Confidence 001123688888887777632
Q ss_pred ----------------CCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCcee
Q 043172 456 ----------------SGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVF 519 (564)
Q Consensus 456 ----------------dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~ 519 (564)
+|.|..||+.++ +.+..+..+ .++..-.+...+.++++++. |+.|+.||..+++.+
T Consensus 438 ~~p~~~~~~~~~~~~~~g~l~A~D~~tG-----~~~W~~~~~-~~~~~g~~~tagglvf~gt~--dg~l~a~D~~tG~~l 509 (689)
T 1yiq_A 438 MMPEGAEGLLEMAKSWSGKLIAWDPVKQ-----QAAWEVPYV-TIFNGGTLSTAGNLVFEGSA--DGRVIAYAADTGEKL 509 (689)
T ss_dssp CCCSSHHHHHHHHTTCEEEEEEEETTTT-----EEEEEEEES-SSCCCCEEEETTTEEEEECT--TSEEEEEETTTCCEE
T ss_pred ccCcccccCCCCCCCcceeEEEEECCCC-----CeEeEccCC-CCccCccceECCCEEEEECC--CCcEEEEECCCCccc
Confidence 367889999887 666666543 33344466677888999887 999999999999988
Q ss_pred ccCCCCCCCCCCcEEEEEeCCCCEEE
Q 043172 520 SNWPPANRNLQYPRCLDFSPGGGFMA 545 (564)
Q Consensus 520 ~~~~~~~~~~~~V~~l~fspdg~~La 545 (564)
-.+....... .+-+.|+.+|+.++
T Consensus 510 w~~~~~~~~~--~~p~ty~~~G~qyv 533 (689)
T 1yiq_A 510 WEQPAASGVM--AAPVTYSVDGEQYV 533 (689)
T ss_dssp EEEECSSCCC--SCCEEEEETTEEEE
T ss_pred eeeeCCCCcc--cCceEEEECCEEEE
Confidence 7665543222 23467788887443
No 237
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.12 E-value=3.1e-09 Score=107.60 Aligned_cols=231 Identities=11% Similarity=0.019 Sum_probs=145.9
Q ss_pred cCeEEEEEeeCCCEEEEEeC--CCeEEEEECCCCceeeeccc---cccCCcceEEEEEcCCCCEEEEEeC-----CCeEE
Q 043172 307 CPVRKASFLPDGSQAIIAGR--RKFFYSLDLVKAKADKIGPL---VGREEKSLEFFEVSPDSSVIAFVGN-----EGYIL 376 (564)
Q Consensus 307 ~~I~~l~fspdg~~l~s~~~--dg~i~iwdl~~~~~~~~~~~---~~~~~~~v~~~~~spdg~~la~~~~-----dg~I~ 376 (564)
..+..++++|+|+.+++..+ ++.+.||.+.+++....... ...+...+..++++++++++++-.. .+.|.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~ 96 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLV 96 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEE
Confidence 57889999999988887642 23244454445654322111 0111246899999999886665433 57899
Q ss_pred EEECCCCcEEEEeeec-------CcEEEEEEecCCCEEEEE-e---CCCeEEEEECCCCceeEEEeecCCcceEEEEECC
Q 043172 377 LVSSKTKELIGTLKMN-------GTVRSLAFADDGKQLLSS-G---GDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSP 445 (564)
Q Consensus 377 lwd~~t~~~~~~~~~~-------~~V~~l~~spdg~~l~s~-s---~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp 445 (564)
+||+.+++.+..+... ..+..+++++++..++++ . .++.|.+||+.+++....+..+.........+.+
T Consensus 97 ~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~ 176 (343)
T 2qe8_A 97 AWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVI 176 (343)
T ss_dssp EEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEE
T ss_pred EEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeE
Confidence 9999999987776521 346899999865555444 4 5789999999988765544321111100123344
Q ss_pred CCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcC---CCc-----
Q 043172 446 DGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIP---SYN----- 517 (564)
Q Consensus 446 ~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~---s~~----- 517 (564)
+|..+.+++.+|.+..|. ..+..|+|+|+|+.|+++... ...|..++.. .+.
T Consensus 177 ~g~~~~~~~~~g~~~~~~-------------------~~~~gia~s~dg~~ly~~~~~-~~~l~~~~~~~~~~~~~~~~~ 236 (343)
T 2qe8_A 177 DGVPVQIGQPDGTVIRPH-------------------LGVNGIVLDAENEWLYLSPMH-STSMYRIKSADLSNLQLTDAE 236 (343)
T ss_dssp TTEECBEECTTSCEECCC-------------------CCEEEEEECTTSCEEEEEESS-CSEEEEEEHHHHTCTTCCHHH
T ss_pred CCEEEEeccCCCceecee-------------------cccceeEeccCCCEEEEEeCC-CCeEEEEEHHHhcCCCCChhh
Confidence 666666666776664442 135679999999999888763 3355555432 110
Q ss_pred eeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEc
Q 043172 518 VFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKL 558 (564)
Q Consensus 518 ~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l 558 (564)
....+.. .++.+.+..++++++|.++++...++.|.+|+.
T Consensus 237 ~~~~~~~-~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~ 276 (343)
T 2qe8_A 237 LGSKIER-YSEKPICDGISIDKDHNIYVGDLAHSAIGVITS 276 (343)
T ss_dssp HHTTCEE-EEECCSCSCEEECTTCCEEEEEGGGTEEEEEET
T ss_pred hhcceEe-cccCCCCceEEECCCCCEEEEccCCCeEEEEEC
Confidence 0110100 012235678999999999998888999999997
No 238
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.08 E-value=1.3e-07 Score=94.53 Aligned_cols=245 Identities=9% Similarity=-0.054 Sum_probs=151.5
Q ss_pred CeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeecccc---------c-------cCCcceEEEEEcC-CCCEEEEEe
Q 043172 308 PVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLV---------G-------REEKSLEFFEVSP-DSSVIAFVG 370 (564)
Q Consensus 308 ~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~---------~-------~~~~~v~~~~~sp-dg~~la~~~ 370 (564)
...+++|.++|+.++++..++.|+.|+..++......... + .....+..+++.+ +++ |+++.
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d 98 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVD 98 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEE
Confidence 4567889999987888888899999998876543321100 0 0012467899998 555 55554
Q ss_pred CCCeEEEEECCCCcEEEEee-----ecCcEEEEEEec-CCCEEEEEeC-----------------CCeEEEEECCCCcee
Q 043172 371 NEGYILLVSSKTKELIGTLK-----MNGTVRSLAFAD-DGKQLLSSGG-----------------DGQVYHWDLRTRTCI 427 (564)
Q Consensus 371 ~dg~I~lwd~~t~~~~~~~~-----~~~~V~~l~~sp-dg~~l~s~s~-----------------dg~V~lwD~~~~~~~ 427 (564)
..+.|..++..++....... .......+++.+ +|++.++-.. .+.|+.||..+++..
T Consensus 99 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~ 178 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETT 178 (322)
T ss_dssp TTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEE
T ss_pred CCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEE
Confidence 45558888877654322111 113578899999 9986665432 378999998776643
Q ss_pred EEEeecCCcceEEEEECCCCCEEEEE-eCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEec----
Q 043172 428 HRAVDEGCINGTALCTSPDGTFFAAG-SDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICST---- 502 (564)
Q Consensus 428 ~~~~~~~~~~i~~l~~sp~g~~lasg-s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~---- 502 (564)
...... .....|+++|+|++|+++ +..+.|.+|++..........+.. ..+ ...+++.++|.+.++...
T Consensus 179 ~~~~~~--~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~---~~g-P~gi~~d~~G~l~va~~~~~~~ 252 (322)
T 2fp8_A 179 LLLKEL--HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK---IPN-PGNIKRNADGHFWVSSSEELDG 252 (322)
T ss_dssp EEEEEE--SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE---CSS-EEEEEECTTSCEEEEEEEETTS
T ss_pred EeccCC--ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe---CCC-CCCeEECCCCCEEEEecCcccc
Confidence 322211 123578999999866555 566899999987531111122222 223 778999999986665443
Q ss_pred ----CCCCeEEEEEcCCCceeccCCCCCCC-CCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCCC
Q 043172 503 ----MKKNSLKLIHIPSYNVFSNWPPANRN-LQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNHY 561 (564)
Q Consensus 503 ----~~d~~I~lwdl~s~~~~~~~~~~~~~-~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~~ 561 (564)
...+.|..++. .++.+..+....+. ...++++++ .++.++++....+.|.++++...
T Consensus 253 ~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 253 NMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp STTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC---
T ss_pred cccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecccc
Confidence 11245777775 46665555433221 345777777 35555555557788999998643
No 239
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.07 E-value=7.2e-08 Score=96.40 Aligned_cols=237 Identities=14% Similarity=0.043 Sum_probs=150.0
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeC--------------------CcCeEEEEEeeCCCEEEE
Q 043172 264 PINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLE--------------------DCPVRKASFLPDGSQAII 323 (564)
Q Consensus 264 ~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~--------------------~~~I~~l~fspdg~~l~s 323 (564)
...+++|++++.+++++..++.|..|+..+.. +..+... ...+..+++.++...|++
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v 96 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSG---FVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYI 96 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTC---EEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCc---eEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEE
Confidence 45678899999988888889999999776432 2222210 124688999983345666
Q ss_pred EeCCCeEEEEECCCCceeeeccc-cccCCcceEEEEEcC-CCCEEEEEeC-----------------CCeEEEEECCCCc
Q 043172 324 AGRRKFFYSLDLVKAKADKIGPL-VGREEKSLEFFEVSP-DSSVIAFVGN-----------------EGYILLVSSKTKE 384 (564)
Q Consensus 324 ~~~dg~i~iwdl~~~~~~~~~~~-~~~~~~~v~~~~~sp-dg~~la~~~~-----------------dg~I~lwd~~t~~ 384 (564)
+...+.+..+|..++....+... .+........+++.+ +|++.++... .+.|..|+..+++
T Consensus 97 ~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~ 176 (322)
T 2fp8_A 97 VDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE 176 (322)
T ss_dssp EETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred EECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence 65555688898876654332211 111112467899999 9987665432 3779999988776
Q ss_pred EEEEeeecCcEEEEEEecCCCEEEEE-eCCCeEEEEECCCCc--eeEEEeecCCcceEEEEECCCCCEEEEEeC------
Q 043172 385 LIGTLKMNGTVRSLAFADDGKQLLSS-GGDGQVYHWDLRTRT--CIHRAVDEGCINGTALCTSPDGTFFAAGSD------ 455 (564)
Q Consensus 385 ~~~~~~~~~~V~~l~~spdg~~l~s~-s~dg~V~lwD~~~~~--~~~~~~~~~~~~i~~l~~sp~g~~lasgs~------ 455 (564)
.......-.....++|+|+++.|+++ +..+.|++|++.... ....+..... ...++++++|+++++...
T Consensus 177 ~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g--P~gi~~d~~G~l~va~~~~~~~~~ 254 (322)
T 2fp8_A 177 TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN--PGNIKRNADGHFWVSSSEELDGNM 254 (322)
T ss_dssp EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS--EEEEEECTTSCEEEEEEEETTSST
T ss_pred EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC--CCCeEECCCCCEEEEecCcccccc
Confidence 54433333456789999999877666 456899999987521 1122222112 578899999986665544
Q ss_pred ----CCcEEEEeCCcccCCcceeeEEcccc----ccceeEEEEcCCCcEEEEEecCCCCeEEEEEcC
Q 043172 456 ----SGIVNVYNRQEFLGGKRKPIKTIENL----TTKVDFMKFNNDAQILAICSTMKKNSLKLIHIP 514 (564)
Q Consensus 456 ----dg~V~iwd~~~~~~~~~~~~~~~~~~----~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~ 514 (564)
.+.|.+|+... +.+..+... ...++.+++ .+++++++... .+.|..+++.
T Consensus 255 ~~~~~~~v~~~d~~G------~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~--~~~i~~~~~~ 312 (322)
T 2fp8_A 255 HGRVDPKGIKFDEFG------NILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLF--HGSVGILVYD 312 (322)
T ss_dssp TSCEEEEEEEECTTS------CEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSS--CSEEEEEEC-
T ss_pred cCCCccEEEEECCCC------CEEEEEECCCCCccccceEEEE-eCCEEEEeecC--CCceEEEecc
Confidence 46788888653 444444322 245677776 45554444434 6788888875
No 240
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.07 E-value=6.7e-08 Score=93.33 Aligned_cols=205 Identities=13% Similarity=0.067 Sum_probs=142.9
Q ss_pred eeEEEEeCC-cCeEEEEEeeCCCEEEEE-eC--CCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEE-eCC
Q 043172 298 KIQSIFLED-CPVRKASFLPDGSQAIIA-GR--RKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFV-GNE 372 (564)
Q Consensus 298 ~~~~~~~~~-~~I~~l~fspdg~~l~s~-~~--dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~~d 372 (564)
.+.++.... .....++|++++ .|+.+ +. .+.|.++|+.+++......+..+. ....+++. +..|+.+ -.+
T Consensus 11 vv~~~p~~~~~f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~--fgeGi~~~--g~~lyv~t~~~ 85 (266)
T 2iwa_A 11 VLNEFPHDPYAFTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSY--FGEGLTLL--NEKLYQVVWLK 85 (266)
T ss_dssp EEEEEECCTTCCEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTC--CEEEEEEE--TTEEEEEETTC
T ss_pred EEEEEECCCCCCcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCc--ceEEEEEe--CCEEEEEEecC
Confidence 344444322 235789999986 55554 43 579999999999987654443322 23455555 4455544 457
Q ss_pred CeEEEEECCCCcEEEEeeec-CcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecC-Cc---ceEEEEECCCC
Q 043172 373 GYILLVSSKTKELIGTLKMN-GTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEG-CI---NGTALCTSPDG 447 (564)
Q Consensus 373 g~I~lwd~~t~~~~~~~~~~-~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~-~~---~i~~l~~sp~g 447 (564)
+.+.++|..+.+.+.++... .. ...++++|+.|+++..++.|.++|..+.+.+..+.... .. ....+.|. +|
T Consensus 86 ~~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg 162 (266)
T 2iwa_A 86 NIGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NG 162 (266)
T ss_dssp SEEEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT
T ss_pred CEEEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CC
Confidence 99999999999999988744 22 34466788888888788999999999998888776431 11 24567777 67
Q ss_pred CEEEEEeCCCcEEEEeCCcccCCcceeeEEcccc-------------ccceeEEEEcCCCcEEEEEecCCCCeEEEEEcC
Q 043172 448 TFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENL-------------TTKVDFMKFNNDAQILAICSTMKKNSLKLIHIP 514 (564)
Q Consensus 448 ~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~-------------~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~ 514 (564)
..++....++.|.+.|..++ +.+.++.-. ....+.|+|+|+++.|++++.. .+.|...++.
T Consensus 163 ~lyvn~~~~~~V~vID~~tg-----~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~-~~~v~~i~l~ 236 (266)
T 2iwa_A 163 EVWANIWQTDCIARISAKDG-----TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKL-WPKLFEIKLH 236 (266)
T ss_dssp EEEEEETTSSEEEEEETTTC-----CEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETT-CSEEEEEEEE
T ss_pred EEEEecCCCCeEEEEECCCC-----cEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCC-CCeEEEEEEe
Confidence 65555556889999999987 677666421 1245899999999877777653 6788888886
Q ss_pred CC
Q 043172 515 SY 516 (564)
Q Consensus 515 s~ 516 (564)
..
T Consensus 237 ~~ 238 (266)
T 2iwa_A 237 LV 238 (266)
T ss_dssp EC
T ss_pred cc
Confidence 53
No 241
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=99.04 E-value=2.1e-08 Score=110.70 Aligned_cols=277 Identities=10% Similarity=0.018 Sum_probs=167.9
Q ss_pred EEEEcC-CCCEEEEEeCCC-----------cEEEEEecCCCCceeEEEEeC-CcCeEEEEEeeCCCEEEEEeC-CCeEEE
Q 043172 267 SVQFHR-NAQLLLVAGLDR-----------RLRFFQIDGKRNTKIQSIFLE-DCPVRKASFLPDGSQAIIAGR-RKFFYS 332 (564)
Q Consensus 267 ~l~fsp-dg~~l~s~s~dg-----------~I~lwd~~~~~~~~~~~~~~~-~~~I~~l~fspdg~~l~s~~~-dg~i~i 332 (564)
++++.| ++++++.||.+. .+.+||+.......+..+... .....++++.++|+.+++||. ...+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 667777 889999987643 578888876665555555433 233445778889999999884 458999
Q ss_pred EECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEe-CC-----CeEEEEECCCCcEEEEe-----eecCcEEEEEEe
Q 043172 333 LDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVG-NE-----GYILLVSSKTKELIGTL-----KMNGTVRSLAFA 401 (564)
Q Consensus 333 wdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~-~d-----g~I~lwd~~t~~~~~~~-----~~~~~V~~l~~s 401 (564)
||..+++...+..+.... .-.++++.++++++++|| .+ ..+.+||..+.++...- .....-....+.
T Consensus 270 yd~~t~~W~~~~~~~~~R--~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~ 347 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVAR--GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYR 347 (656)
T ss_dssp EEGGGTEEEECCCCSSCC--SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGT
T ss_pred ecCcCCceeECCCCCccc--cccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceee
Confidence 999998876655443322 233566678999999998 34 56999999988876531 100000001122
Q ss_pred cCCCEEEEEeCC---------CeEEEEECCCCceeEEEeecC--------CcceEEEEEC-CCCCEEEEEeCCC------
Q 043172 402 DDGKQLLSSGGD---------GQVYHWDLRTRTCIHRAVDEG--------CINGTALCTS-PDGTFFAAGSDSG------ 457 (564)
Q Consensus 402 pdg~~l~s~s~d---------g~V~lwD~~~~~~~~~~~~~~--------~~~i~~l~~s-p~g~~lasgs~dg------ 457 (564)
.++..++.++.+ ..+..||..+........... .....++.+. .+++++++|+.++
T Consensus 348 ~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~ 427 (656)
T 1k3i_A 348 SDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDA 427 (656)
T ss_dssp TTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBC
T ss_pred cCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCc
Confidence 345555555444 457889988766443222111 1123445454 3677888887532
Q ss_pred -----cEEEEeCCcccCCcceeeEEccccccc-eeEEEEcCCCcEEEEEecCC---------CCeEEEEEcCCCceeccC
Q 043172 458 -----IVNVYNRQEFLGGKRKPIKTIENLTTK-VDFMKFNNDAQILAICSTMK---------KNSLKLIHIPSYNVFSNW 522 (564)
Q Consensus 458 -----~V~iwd~~~~~~~~~~~~~~~~~~~~~-I~~l~fspdg~~La~~s~~~---------d~~I~lwdl~s~~~~~~~ 522 (564)
.|.+||..+. ....+..-...... -.+++..|+|+++++|+... -..+.+||..+.+-.. .
T Consensus 428 ~~~~~~v~~yd~~~~---~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~-~ 503 (656)
T 1k3i_A 428 TTNAHIITLGEPGTS---PNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYK-Q 503 (656)
T ss_dssp CCCEEEEECCSTTSC---CEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEE-C
T ss_pred CCcceEEEcCCCCCC---CeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceee-c
Confidence 6778887653 11222100111122 23456678999999987521 1568999987754322 2
Q ss_pred CCCCCCCCCcEEEEEeCCCCEEEEEcC
Q 043172 523 PPANRNLQYPRCLDFSPGGGFMAVGNA 549 (564)
Q Consensus 523 ~~~~~~~~~V~~l~fspdg~~Lasgs~ 549 (564)
.....+.....+..+.|+|+.+++|+.
T Consensus 504 ~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 504 NPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCCCCccccccHhhcCCCcEEEecCCC
Confidence 222233344455667899999999985
No 242
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.00 E-value=4.3e-08 Score=93.61 Aligned_cols=183 Identities=11% Similarity=0.153 Sum_probs=128.7
Q ss_pred ceEEEEEcCCCCEEEEEeCCC--eEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEEe-CCCeEEEEECCCCceeEE
Q 043172 353 SLEFFEVSPDSSVIAFVGNEG--YILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSG-GDGQVYHWDLRTRTCIHR 429 (564)
Q Consensus 353 ~v~~~~~spdg~~la~~~~dg--~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s-~dg~V~lwD~~~~~~~~~ 429 (564)
-...+.|+ ++.++.+++.+| .|+++|+.+++.+..+............+++..|+... .++.+.+||..+.+.+.+
T Consensus 44 ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~t 122 (262)
T 3nol_A 44 FTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRS 122 (262)
T ss_dssp EEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred ccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEE
Confidence 35778898 677777777765 89999999999999888655554433444455666554 478999999999999998
Q ss_pred EeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEcccc--c---cceeEEEEcCCCcEEEEEecCC
Q 043172 430 AVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENL--T---TKVDFMKFNNDAQILAICSTMK 504 (564)
Q Consensus 430 ~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~--~---~~I~~l~fspdg~~La~~s~~~ 504 (564)
+..... ...++ +++..|+....++.|.++|..+. +.+.++.-. . ..++.+.|. +|+ |.+....
T Consensus 123 i~~~~e--G~glt--~dg~~L~~SdGs~~i~~iDp~T~-----~v~~~I~V~~~g~~~~~lNELe~~-~G~-lyan~w~- 190 (262)
T 3nol_A 123 FNYDGE--GWGLT--HNDQYLIMSDGTPVLRFLDPESL-----TPVRTITVTAHGEELPELNELEWV-DGE-IFANVWQ- 190 (262)
T ss_dssp EECSSC--CCCEE--ECSSCEEECCSSSEEEEECTTTC-----SEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETT-
T ss_pred EECCCC--ceEEe--cCCCEEEEECCCCeEEEEcCCCC-----eEEEEEEeccCCccccccceeEEE-CCE-EEEEEcc-
Confidence 876442 23444 46666666666788999999887 666665431 1 334557776 675 4444432
Q ss_pred CCeEEEEEcCCCceeccCCCCC---------CCCCCcEEEEEeCCCCEEEEEc
Q 043172 505 KNSLKLIHIPSYNVFSNWPPAN---------RNLQYPRCLDFSPGGGFMAVGN 548 (564)
Q Consensus 505 d~~I~lwdl~s~~~~~~~~~~~---------~~~~~V~~l~fspdg~~Lasgs 548 (564)
.+.|.+.|..++++...+.... ......+.|+|+|+++.|++.+
T Consensus 191 ~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 191 TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 7899999999999877665431 1123568999999877766655
No 243
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.00 E-value=4.2e-11 Score=122.79 Aligned_cols=183 Identities=14% Similarity=0.058 Sum_probs=105.4
Q ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcce-EE
Q 043172 362 DSSVIAFVGNEGYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCING-TA 440 (564)
Q Consensus 362 dg~~la~~~~dg~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i-~~ 440 (564)
++..+++++.+|.|+.||..+|+.+..+.. +.+.+..+..++..+++++.||.|+.||..+++.+..+.......+ .+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~s 86 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQAS 86 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccC
Confidence 577899999999999999999999988876 5565555666787788888999999999999888766543211111 01
Q ss_pred EEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceec
Q 043172 441 LCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFS 520 (564)
Q Consensus 441 l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~ 520 (564)
.++. .+..|++|+.+|.|..||..++ +.+..+..+. ...++|++..|++++. ++.|+.||..+++..-
T Consensus 87 p~~~-~~~~v~~g~~dg~v~a~D~~tG-----~~~w~~~~~~----~~~~~p~~~~v~~~~~--dg~v~a~d~~tG~~~W 154 (369)
T 2hz6_A 87 PCRS-SDGILYMGKKQDIWYVIDLLTG-----EKQQTLSSAF----ADSLSPSTSLLYLGRT--EYTITMYDTKTRELRW 154 (369)
T ss_dssp SCC------CCCCEEEEEEEEECCC-------------------------------EEEEEE--EEEEECCCSSSSSCCC
T ss_pred ceEe-cCCEEEEEeCCCEEEEEECCCC-----cEEEEecCCC----cccccccCCEEEEEec--CCEEEEEECCCCCEEE
Confidence 1111 3456788888999999999987 6666555432 2456778888999887 8999999999887654
Q ss_pred cCCCCCCCCCCcEEEEEeCCC---CEEEEEcCCCeEEEEEcCCCC
Q 043172 521 NWPPANRNLQYPRCLDFSPGG---GFMAVGNAAGKVFLYKLNHYH 562 (564)
Q Consensus 521 ~~~~~~~~~~~V~~l~fspdg---~~Lasgs~dG~V~lw~l~~~~ 562 (564)
.+.... ....+++++. ..+++++.+|.|+.||..+.+
T Consensus 155 ~~~~~~-----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~ 194 (369)
T 2hz6_A 155 NATYFD-----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGD 194 (369)
T ss_dssp EEEEEE-----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCC
T ss_pred eEeccc-----ccCccccCCccccceEEEECCCCEEEEEECCCCc
Confidence 332110 1122233332 456778889999999987654
No 244
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.96 E-value=1.5e-08 Score=101.07 Aligned_cols=266 Identities=12% Similarity=0.030 Sum_probs=163.2
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCcee
Q 043172 262 TGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKAD 341 (564)
Q Consensus 262 ~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~ 341 (564)
...+.++.+.+++.+++ ++.+ |..|+..+. .+..+...........+. +..|++++.++.++.+|.. ++..
T Consensus 59 ~~~~~~~~~~~~g~l~v-~t~~--l~~~d~~g~---~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~ 129 (330)
T 3hxj_A 59 EIIECRPSIGKDGTIYF-GSDK--VYAINPDGT---EKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEK 129 (330)
T ss_dssp GEEEECCEETTTTEECC-SSCE--EEEECCCGG---GGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEE
T ss_pred CCcccceEEecCCcEEE-ecCc--EEEECCCCc---EEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEE
Confidence 34567777777775444 4433 777765322 211111111122223333 5577888888999999988 6543
Q ss_pred eeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEeCCCeEEEEE
Q 043172 342 KIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQVYHWD 420 (564)
Q Consensus 342 ~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~V~lwD 420 (564)
...... ...+.++.+.+++. |++++.++.|..+|.. ++.+..+. ....+.++.+.+++.+ ++++ +.|+.||
T Consensus 130 ~~~~~~---~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l-~v~t--~~l~~~d 201 (330)
T 3hxj_A 130 WRFKTK---KAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTI-YFGS--DKVYAIN 201 (330)
T ss_dssp EEEECS---SCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCE-EEES--SSEEEEC
T ss_pred EEEcCC---CceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEE-EEEe--CEEEEEC
Confidence 322221 11345566676776 5567778999999998 87776666 3445667777777774 4455 7899999
Q ss_pred CCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEE
Q 043172 421 LRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAIC 500 (564)
Q Consensus 421 ~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~ 500 (564)
.+++.+..+.... ..+.+++..++|. |.+++.++.|..++... ..+..+......+.++.+.+++. |.++
T Consensus 202 -~~g~~~~~~~~~~-~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~g------~~~~~~~~~~~~~~~~~~~~~g~-l~v~ 271 (330)
T 3hxj_A 202 -PDGTEKWNFYAGY-WTVTRPAISEDGT-IYVTSLDGHLYAINPDG------TEKWRFKTGKRIESSPVIGNTDT-IYFG 271 (330)
T ss_dssp -TTSCEEEEECCSS-CCCSCCEECTTSC-EEEEETTTEEEEECTTS------CEEEEEECSSCCCSCCEECTTSC-EEEE
T ss_pred -CCCcEEEEEccCC-cceeceEECCCCe-EEEEcCCCeEEEECCCC------CEeEEeeCCCCccccceEcCCCe-EEEe
Confidence 6777665554332 3466788888875 55677778888887533 34444443344445566666665 5566
Q ss_pred ecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCCC
Q 043172 501 STMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNHY 561 (564)
Q Consensus 501 s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~~ 561 (564)
+. ++.|..++. ++.....+... ...+.++...++|. |.+|+.+|.+++......
T Consensus 272 t~--~ggl~~~d~-~g~~~~~~~~~---~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~ 325 (330)
T 3hxj_A 272 SY--DGHLYAINP-DGTEKWNFETG---SWIIATPVIDENGT-IYFGTRNGKFYALFNLEH 325 (330)
T ss_dssp CT--TCEEEEECT-TSCEEEEEECS---SCCCSCCEECTTCC-EEEECTTSCEEEEEC---
T ss_pred cC--CCCEEEECC-CCcEEEEEEcC---CccccceEEcCCCE-EEEEcCCCeEEEEecccc
Confidence 66 778999985 66655443322 24566777778876 566889999999877543
No 245
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.96 E-value=4.8e-07 Score=87.65 Aligned_cols=228 Identities=12% Similarity=0.061 Sum_probs=141.1
Q ss_pred CEEEEEeCCCeEEEEECCCCceeee--ccccccCCcceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCcEEEEeee-cCc
Q 043172 319 SQAIIAGRRKFFYSLDLVKAKADKI--GPLVGREEKSLEFFEVSPDSSVIAFVG-NEGYILLVSSKTKELIGTLKM-NGT 394 (564)
Q Consensus 319 ~~l~s~~~dg~i~iwdl~~~~~~~~--~~~~~~~~~~v~~~~~spdg~~la~~~-~dg~I~lwd~~t~~~~~~~~~-~~~ 394 (564)
.+|+.+.. +.|+.+++........ ..+.......+..++|+++++.|+.+. ..+.|..+++.+......+.. ...
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 35555553 4788888876543211 001111112467899999776666555 468999999977654333322 257
Q ss_pred EEEEEEecCCCEEEEE-eCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeC---CCcEEEEeCCcccCC
Q 043172 395 VRSLAFADDGKQLLSS-GGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSD---SGIVNVYNRQEFLGG 470 (564)
Q Consensus 395 V~~l~~spdg~~l~s~-s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~---dg~V~iwd~~~~~~~ 470 (564)
..+++++|++..|+.+ ...+.|.++++..... ..+..........++++|++.+|+.+.. .+.|.++++...
T Consensus 81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~--- 156 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT--- 156 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC---
T ss_pred ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE-EEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC---
Confidence 8999999976656555 4567999999875432 2233222235678999997665554443 468888887642
Q ss_pred cceeeEEc-cccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEc-
Q 043172 471 KRKPIKTI-ENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGN- 548 (564)
Q Consensus 471 ~~~~~~~~-~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs- 548 (564)
....+ .........++++|++..|+++... .+.|.++++........+.. ......+++. +..|+++.
T Consensus 157 ---~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~-~~~I~~~~~~g~~~~~~~~~----~~~P~gi~~d--~~~lyva~~ 226 (267)
T 1npe_A 157 ---NRRILAQDNLGLPNGLTFDAFSSQLCWVDAG-THRAECLNPAQPGRRKVLEG----LQYPFAVTSY--GKNLYYTDW 226 (267)
T ss_dssp ---CCEEEECTTCSCEEEEEEETTTTEEEEEETT-TTEEEEEETTEEEEEEEEEC----CCSEEEEEEE--TTEEEEEET
T ss_pred ---CcEEEEECCCCCCcEEEEcCCCCEEEEEECC-CCEEEEEecCCCceEEEecC----CCCceEEEEe--CCEEEEEEC
Confidence 11222 1223457889999998888777654 68999999875443322221 2345677664 45555554
Q ss_pred CCCeEEEEEcCCC
Q 043172 549 AAGKVFLYKLNHY 561 (564)
Q Consensus 549 ~dG~V~lw~l~~~ 561 (564)
..+.|.+++..+.
T Consensus 227 ~~~~v~~~d~~~g 239 (267)
T 1npe_A 227 KTNSVIAMDLAIS 239 (267)
T ss_dssp TTTEEEEEETTTT
T ss_pred CCCeEEEEeCCCC
Confidence 5688999988654
No 246
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.94 E-value=8.7e-07 Score=87.83 Aligned_cols=226 Identities=12% Similarity=0.044 Sum_probs=143.8
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCC--CeEEEEECCCCce
Q 043172 263 GPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRR--KFFYSLDLVKAKA 340 (564)
Q Consensus 263 ~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~d--g~i~iwdl~~~~~ 340 (564)
....+++|+|++.++++....+.|..|+.++. ....+. ....+..+++.++|+.+++.... ..|..++..+++.
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~---~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~ 107 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN---QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV 107 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC---EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc---eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeE
Confidence 46789999999997777767888988877642 222232 33567899999999865554332 3577788888876
Q ss_pred eeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE-EEEe-------e---ecCcEEEEEEecCCCEEEE
Q 043172 341 DKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKEL-IGTL-------K---MNGTVRSLAFADDGKQLLS 409 (564)
Q Consensus 341 ~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~-~~~~-------~---~~~~V~~l~~spdg~~l~s 409 (564)
..+..+... .....+++.+++..+++-...+.|+++|..++.. +... . .-.....+ +|+++.|++
T Consensus 108 ~~~~~~~~~--~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv 183 (306)
T 2p4o_A 108 ETLLTLPDA--IFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYV 183 (306)
T ss_dssp EEEEECTTC--SCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEE
T ss_pred EEEEeCCCc--cccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEE
Confidence 544333221 1245556666555455444578999999876532 1110 0 11234556 788876666
Q ss_pred Ee-CCCeEEEEECCC-Cce--eEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccce
Q 043172 410 SG-GDGQVYHWDLRT-RTC--IHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKV 485 (564)
Q Consensus 410 ~s-~dg~V~lwD~~~-~~~--~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I 485 (564)
+. ..+.|+.|++.. +.. ...+... .....++++++|+++++....+.|.+|+.... ...+..+.......
T Consensus 184 ~d~~~~~I~~~~~~~~g~~~~~~~~~~~--~~P~gi~vd~dG~l~va~~~~~~V~~~~~~G~----~~~~~~~~~~~~~p 257 (306)
T 2p4o_A 184 SNTEKMLLLRIPVDSTDKPGEPEIFVEQ--TNIDDFAFDVEGNLYGATHIYNSVVRIAPDRS----TTIIAQAEQGVIGS 257 (306)
T ss_dssp EETTTTEEEEEEBCTTSCBCCCEEEEES--CCCSSEEEBTTCCEEEECBTTCCEEEECTTCC----EEEEECGGGTCTTE
T ss_pred EeCCCCEEEEEEeCCCCCCCccEEEecc--CCCCCeEECCCCCEEEEeCCCCeEEEECCCCC----EEEEeecccccCCc
Confidence 54 467999999874 321 1222211 12356889999988777777889999997531 11132343333568
Q ss_pred eEEEEc---CCCcEEEEEec
Q 043172 486 DFMKFN---NDAQILAICST 502 (564)
Q Consensus 486 ~~l~fs---pdg~~La~~s~ 502 (564)
++++|. |++..|++++.
T Consensus 258 ~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 258 TAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp EEEEECCSTTTTTEEEEEEC
T ss_pred eEEEEecccCCCCEEEEECC
Confidence 899998 89888887775
No 247
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.93 E-value=3.8e-06 Score=94.76 Aligned_cols=278 Identities=10% Similarity=0.052 Sum_probs=178.1
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeec
Q 043172 265 INSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIG 344 (564)
Q Consensus 265 V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~ 344 (564)
|.++...+++.+.+ ++.++.|..|+........... ......|.++...++|...+ ++.++-+++|+..+++.....
T Consensus 175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~-~~~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~ 251 (795)
T 4a2l_A 175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIP-ILGTKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYL 251 (795)
T ss_dssp CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC-----CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEEC
T ss_pred eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecC-CCCCCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEee
Confidence 88999988886555 5555558888765432211111 11345788888888776554 444434889999887665432
Q ss_pred ccc----ccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee--------ecCcEEEEEEecCCCEEEEEeC
Q 043172 345 PLV----GREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK--------MNGTVRSLAFADDGKQLLSSGG 412 (564)
Q Consensus 345 ~~~----~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~--------~~~~V~~l~~spdg~~l~s~s~ 412 (564)
... ......|.++...++|.+.+. +.. -|.+|+..++....... ....|.++...++|. |.+|+.
T Consensus 252 ~~~~~~~~l~~~~i~~i~~d~~g~lWig-t~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~ 328 (795)
T 4a2l_A 252 HSPSNPKSISSNYIRSLAMDSQNRLWIG-TFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTY 328 (795)
T ss_dssp CCTTCTTSCSCSBEEEEEECTTSCEEEE-ESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEES
T ss_pred cCCCCccccCCCeEEEEEEcCCCCEEEE-eCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEEC
Confidence 211 112246899999988876554 444 48899988776544321 235699999998887 566777
Q ss_pred CCeEEEEECCCCceeEEEeec------CCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEcc-------
Q 043172 413 DGQVYHWDLRTRTCIHRAVDE------GCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIE------- 479 (564)
Q Consensus 413 dg~V~lwD~~~~~~~~~~~~~------~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~------- 479 (564)
++-|..|+..+..... +... ....|.+++..++|. |.+|+.++-|..|+..+. .+..+.
T Consensus 329 ~~Gl~~~~~~~~~~~~-~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~------~~~~~~~~~~~~~ 400 (795)
T 4a2l_A 329 FGGLNYYHPIRNRFKN-IRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQ------RFTSYTLQEDESA 400 (795)
T ss_dssp SSCEEEECGGGGSSEE-ECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTC------CEEEECCC-----
T ss_pred CCCeEEeCCCcccceE-EcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCC------cEEEEecCCCCcc
Confidence 7789999876554322 2211 123578898888876 556888878999998753 122221
Q ss_pred --ccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCC-CCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEE
Q 043172 480 --NLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWP-PANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLY 556 (564)
Q Consensus 480 --~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~-~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw 556 (564)
-....|.++...++|++|.+|+. ++.|.+|+..++....-.. ....+...|.++...++|.+.+.. ..| |.+|
T Consensus 401 ~~l~~~~v~~i~~d~~g~~lWigt~--~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~G-l~~~ 476 (795)
T 4a2l_A 401 RGIGSNNIKAVYVDEKKSLVYIGTH--AGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-LSA-LVRF 476 (795)
T ss_dssp -CCSCSCEEEEEEETTTTEEEEEET--TTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SSC-EEEE
T ss_pred cCCCCccEEEEEEcCCCCEEEEEeC--cCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cCc-eeEE
Confidence 12356889999889985666776 6789999988765432111 111233578999999888865544 444 7778
Q ss_pred EcCC
Q 043172 557 KLNH 560 (564)
Q Consensus 557 ~l~~ 560 (564)
+..+
T Consensus 477 ~~~~ 480 (795)
T 4a2l_A 477 NPEQ 480 (795)
T ss_dssp ETTT
T ss_pred eCCC
Confidence 7653
No 248
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.93 E-value=1.2e-08 Score=101.84 Aligned_cols=259 Identities=12% Similarity=0.101 Sum_probs=157.1
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeecc
Q 043172 266 NSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGP 345 (564)
Q Consensus 266 ~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~ 345 (564)
.++.+..++. |++++.++.|..|+ .. ...+.....+...+.++...++| .|++++.+ ++.+|. +++......
T Consensus 23 ~~~~~d~~g~-l~v~t~~~~l~~~d-~~--g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~--l~~~d~-~g~~~~~~~ 94 (330)
T 3hxj_A 23 SSPILAKNGT-IYLGSSNKNLYAIN-TD--GSVKWFFKSGEIIECRPSIGKDG-TIYFGSDK--VYAINP-DGTEKWRFD 94 (330)
T ss_dssp CCCEECTTSC-EECSSTTTTTEEEC-TT--SCEEESSCGGGEEEECCEETTTT-EECCSSCE--EEEECC-CGGGGGGSC
T ss_pred cCceEccCCe-EEEEcCCCEEEEEC-CC--CcEEEEEecCCCcccceEEecCC-cEEEecCc--EEEECC-CCcEEEEEE
Confidence 3444545554 55666788888887 42 22333222333344556665555 45555544 888886 554322111
Q ss_pred ccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCC
Q 043172 346 LVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTR 424 (564)
Q Consensus 346 ~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~ 424 (564)
... . ......+. +..|.+++.++.|..+|.. ++...... ....+.++...+++. |++++.++.|+.||.. +
T Consensus 95 ~~~--~-~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g 166 (330)
T 3hxj_A 95 TKK--A-IVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-G 166 (330)
T ss_dssp C--------CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-S
T ss_pred CCC--C-cccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-C
Confidence 111 1 12223333 5567778888999999988 77766655 334456667776776 6667788999999998 7
Q ss_pred ceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCC
Q 043172 425 TCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMK 504 (564)
Q Consensus 425 ~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~ 504 (564)
+.+..+..... .+.++.+.+++.++ +++ +.|..|| .++ ..+.........+.++.+.++|.+. +++.
T Consensus 167 ~~~~~~~~~~~-~~~~~~~d~~g~l~-v~t--~~l~~~d-~~g-----~~~~~~~~~~~~~~~~~~~~~g~l~-v~t~-- 233 (330)
T 3hxj_A 167 TEKWRFKTNDA-ITSAASIGKDGTIY-FGS--DKVYAIN-PDG-----TEKWNFYAGYWTVTRPAISEDGTIY-VTSL-- 233 (330)
T ss_dssp CEEEEEECSSC-CCSCCEECTTCCEE-EES--SSEEEEC-TTS-----CEEEEECCSSCCCSCCEECTTSCEE-EEET--
T ss_pred CEeEEEecCCC-ceeeeEEcCCCEEE-EEe--CEEEEEC-CCC-----cEEEEEccCCcceeceEECCCCeEE-EEcC--
Confidence 77666554332 45667777777644 455 7899999 554 4555555455678888888888654 4555
Q ss_pred CCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEc
Q 043172 505 KNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKL 558 (564)
Q Consensus 505 d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l 558 (564)
++.|..++. ++..+..+.... ..+.++.+.+++ .|.+++.+|.|..++.
T Consensus 234 ~~gl~~~~~-~g~~~~~~~~~~---~~~~~~~~~~~g-~l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 234 DGHLYAINP-DGTEKWRFKTGK---RIESSPVIGNTD-TIYFGSYDGHLYAINP 282 (330)
T ss_dssp TTEEEEECT-TSCEEEEEECSS---CCCSCCEECTTS-CEEEECTTCEEEEECT
T ss_pred CCeEEEECC-CCCEeEEeeCCC---CccccceEcCCC-eEEEecCCCCEEEECC
Confidence 677888874 455444333221 223445566565 4667777888888874
No 249
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.92 E-value=1.8e-07 Score=101.34 Aligned_cols=274 Identities=12% Similarity=0.049 Sum_probs=165.4
Q ss_pred CCEEEEEeC-CCcEEEEEe-cCCCCceeEEEEeCCc-C---------e-EEEEEeeCCCEEEEEeCCCeEEEEECCCCce
Q 043172 274 AQLLLVAGL-DRRLRFFQI-DGKRNTKIQSIFLEDC-P---------V-RKASFLPDGSQAIIAGRRKFFYSLDLVKAKA 340 (564)
Q Consensus 274 g~~l~s~s~-dg~I~lwd~-~~~~~~~~~~~~~~~~-~---------I-~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~ 340 (564)
+..|++++. ++.|.-+|. .+ ...+-....... . + ..+++ .+..|++++.++.++.+|..+|+.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~t--G~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~ 137 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDP--GKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKI 137 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCT--TSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCE
T ss_pred CCEEEEEeCCCCEEEEEeCCCC--ccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCE
Confidence 445666666 777777776 43 334433322111 0 0 11222 356888888899999999999987
Q ss_pred eeeccccccCC-cceE-EEEEcCCCCEEEEEeC------CCeEEEEECCCCcEEEEeeecCcE-----------------
Q 043172 341 DKIGPLVGREE-KSLE-FFEVSPDSSVIAFVGN------EGYILLVSSKTKELIGTLKMNGTV----------------- 395 (564)
Q Consensus 341 ~~~~~~~~~~~-~~v~-~~~~spdg~~la~~~~------dg~I~lwd~~t~~~~~~~~~~~~V----------------- 395 (564)
.-...+..+.. ..+. ...+ .+..+++++. +|.|..+|..+++.+..+......
T Consensus 138 ~W~~~~~~~~~~~~~~~~P~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G 215 (571)
T 2ad6_A 138 NWEVEVCDPKVGSTLTQAPFV--AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYG 215 (571)
T ss_dssp EEEEECCCGGGTCBCCSCCEE--ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred EEEecCCCCCccceeccCCEE--ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccc
Confidence 54333322110 0111 0111 1345555554 789999999999998877632211
Q ss_pred ----------------------EEEEEecCCCEEEEEeCC----------------CeEEEEECCCCceeEEEeecCC--
Q 043172 396 ----------------------RSLAFADDGKQLLSSGGD----------------GQVYHWDLRTRTCIHRAVDEGC-- 435 (564)
Q Consensus 396 ----------------------~~l~~spdg~~l~s~s~d----------------g~V~lwD~~~~~~~~~~~~~~~-- 435 (564)
..+++.+....++.++.+ +.|+.+|..+++.+-.+...+.
T Consensus 216 ~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~ 295 (571)
T 2ad6_A 216 QFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDE 295 (571)
T ss_dssp CSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCS
T ss_pred ccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcc
Confidence 135667766677766532 3699999999998877654211
Q ss_pred ------cceEEEEECCCCC---EEEEEeCCCcEEEEeCCcccCCcceeeEEccccc-------------cce--------
Q 043172 436 ------INGTALCTSPDGT---FFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLT-------------TKV-------- 485 (564)
Q Consensus 436 ------~~i~~l~~sp~g~---~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~-------------~~I-------- 485 (564)
.....+...++|+ .++.++.+|.+.++|..++ +.+..+.... .++
T Consensus 296 ~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG-----~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~ 370 (571)
T 2ad6_A 296 WDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENG-----NLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATR 370 (571)
T ss_dssp SCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTC-----CEEEEEESSTTCCSEEEECTTTCSEEECGGGCCC
T ss_pred cccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCC-----CEEeeecccCCccccccccccCCceecccccCCC
Confidence 1111122224673 6778899999999999886 4443322110 111
Q ss_pred ------------------eEEEEcCCCcEEEEEec-----------------------------------CCCCeEEEEE
Q 043172 486 ------------------DFMKFNNDAQILAICST-----------------------------------MKKNSLKLIH 512 (564)
Q Consensus 486 ------------------~~l~fspdg~~La~~s~-----------------------------------~~d~~I~lwd 512 (564)
..++|+|++.+|++.+. ...+.|..||
T Consensus 371 ~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D 450 (571)
T 2ad6_A 371 MDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFD 450 (571)
T ss_dssp TTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEEC
T ss_pred CCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEE
Confidence 24678888888877653 1257899999
Q ss_pred cCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCCCC
Q 043172 513 IPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNHYH 562 (564)
Q Consensus 513 l~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~~~ 562 (564)
+.+++..-.++... .+.+..+...+..+++++.+|.|+.||..+++
T Consensus 451 ~~tG~~~W~~~~~~----~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~ 496 (571)
T 2ad6_A 451 LTTGKAKWTKWEKF----AAWGGTLYTKGGLVWYATLDGYLKALDNKDGK 496 (571)
T ss_dssp TTTCCEEEEEEESS----CCCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred CCCCCEEEEecCCC----CccceeEEECCCEEEEEcCCCeEEEEECCCCC
Confidence 99888765443321 12222333456778889999999999988765
No 250
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.92 E-value=3e-07 Score=87.02 Aligned_cols=184 Identities=12% Similarity=0.088 Sum_probs=126.4
Q ss_pred cceEEEEEcCCCCEEEEEeCC--CeEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEE-eCCCeEEEEECCCCceeE
Q 043172 352 KSLEFFEVSPDSSVIAFVGNE--GYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSS-GGDGQVYHWDLRTRTCIH 428 (564)
Q Consensus 352 ~~v~~~~~spdg~~la~~~~d--g~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~-s~dg~V~lwD~~~~~~~~ 428 (564)
.-...+.|++ +.++.+.+.. +.|..+|+.+++.+..+............+.+..|+.. -.++.+.+||..+.+.+.
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ 99 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRA 99 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEE
Confidence 3467889986 5666666665 48999999999999988855554444333345555544 458899999999999999
Q ss_pred EEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEcccc--c---cceeEEEEcCCCcEEEEEecC
Q 043172 429 RAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENL--T---TKVDFMKFNNDAQILAICSTM 503 (564)
Q Consensus 429 ~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~--~---~~I~~l~fspdg~~La~~s~~ 503 (564)
++..... ...++ +++..|+++..++.|.++|..+. +.+.++.-. . ..++.+.|. +|++. +....
T Consensus 100 ti~~~~~--Gwglt--~dg~~L~vSdgs~~l~~iDp~t~-----~~~~~I~V~~~g~~~~~lNeLe~~-~G~ly-anvw~ 168 (243)
T 3mbr_X 100 RFRYPGE--GWALT--SDDSHLYMSDGTAVIRKLDPDTL-----QQVGSIKVTAGGRPLDNLNELEWV-NGELL-ANVWL 168 (243)
T ss_dssp EEECSSC--CCEEE--ECSSCEEEECSSSEEEEECTTTC-----CEEEEEECEETTEECCCEEEEEEE-TTEEE-EEETT
T ss_pred EEeCCCC--ceEEe--eCCCEEEEECCCCeEEEEeCCCC-----eEEEEEEEccCCcccccceeeEEe-CCEEE-EEECC
Confidence 8876542 24554 45666666666889999999887 666665432 1 344556665 66644 44432
Q ss_pred CCCeEEEEEcCCCceeccCCCCC----------CCCCCcEEEEEeCCCCEEEEEc
Q 043172 504 KKNSLKLIHIPSYNVFSNWPPAN----------RNLQYPRCLDFSPGGGFMAVGN 548 (564)
Q Consensus 504 ~d~~I~lwdl~s~~~~~~~~~~~----------~~~~~V~~l~fspdg~~Lasgs 548 (564)
.+.|.+.|..++++...+.... ......+.|+|+|+++.|++.+
T Consensus 169 -s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 169 -TSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp -TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred -CCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 7899999999999877655331 1223568999999876665544
No 251
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.88 E-value=2.1e-06 Score=85.04 Aligned_cols=227 Identities=11% Similarity=0.053 Sum_probs=139.6
Q ss_pred cCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCC--CeEEEEECCCCc
Q 043172 307 CPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNE--GYILLVSSKTKE 384 (564)
Q Consensus 307 ~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d--g~I~lwd~~t~~ 384 (564)
.....++|+++|+.+++....+.|+.||..+... ...... ..+..+++.++|+++++.... ..|..++..+++
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~-~~~~~~----~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~ 106 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ-IHATVE----GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT 106 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEE-EEEECS----SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCceE-EEEeCC----CCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCe
Confidence 3567899999988666655788999999876432 222221 257889999999966554332 357778888887
Q ss_pred EEEEeee--cCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCce-eEEEee--------cCCcceEEEEECCCCCEEEEE
Q 043172 385 LIGTLKM--NGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTC-IHRAVD--------EGCINGTALCTSPDGTFFAAG 453 (564)
Q Consensus 385 ~~~~~~~--~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~-~~~~~~--------~~~~~i~~l~~sp~g~~lasg 453 (564)
....... ......++..+++..+++-...+.|+++|..++.. +..... ........| +|++++|+++
T Consensus 107 ~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~ 184 (306)
T 2p4o_A 107 VETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVS 184 (306)
T ss_dssp EEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEE
T ss_pred EEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEE
Confidence 6543332 22345556555554444444588999999876532 211110 111123445 7788765544
Q ss_pred -eCCCcEEEEeCCc-ccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCce--eccCCCCCCCC
Q 043172 454 -SDSGIVNVYNRQE-FLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNV--FSNWPPANRNL 529 (564)
Q Consensus 454 -s~dg~V~iwd~~~-~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~--~~~~~~~~~~~ 529 (564)
+..+.|.+|++.. +.......+..+ .....+++.++|+++++... .+.|.+++.. ++. +..++ .+.
T Consensus 185 d~~~~~I~~~~~~~~g~~~~~~~~~~~----~~P~gi~vd~dG~l~va~~~--~~~V~~~~~~-G~~~~~~~~~---~~~ 254 (306)
T 2p4o_A 185 NTEKMLLLRIPVDSTDKPGEPEIFVEQ----TNIDDFAFDVEGNLYGATHI--YNSVVRIAPD-RSTTIIAQAE---QGV 254 (306)
T ss_dssp ETTTTEEEEEEBCTTSCBCCCEEEEES----CCCSSEEEBTTCCEEEECBT--TCCEEEECTT-CCEEEEECGG---GTC
T ss_pred eCCCCEEEEEEeCCCCCCCccEEEecc----CCCCCeEECCCCCEEEEeCC--CCeEEEECCC-CCEEEEeecc---ccc
Confidence 5678999999874 210111122111 34567999999987655554 6889999865 544 22222 223
Q ss_pred CCcEEEEEe---CCCCEEEEEcCC
Q 043172 530 QYPRCLDFS---PGGGFMAVGNAA 550 (564)
Q Consensus 530 ~~V~~l~fs---pdg~~Lasgs~d 550 (564)
..+++++|. |+++.|++++..
T Consensus 255 ~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 255 IGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp TTEEEEEECCSTTTTTEEEEEECT
T ss_pred CCceEEEEecccCCCCEEEEECCC
Confidence 568999999 898887776543
No 252
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.86 E-value=5.5e-06 Score=93.43 Aligned_cols=276 Identities=9% Similarity=0.064 Sum_probs=178.0
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEe-------CCcCeEEEEEeeCCCEEEEEeCCCeEEEE
Q 043172 261 STGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFL-------EDCPVRKASFLPDGSQAIIAGRRKFFYSL 333 (564)
Q Consensus 261 h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~-------~~~~I~~l~fspdg~~l~s~~~dg~i~iw 333 (564)
....|.++...++|.+. .|+.++-|..|+..... ...+.. ....|.+++..++|+ |.+|+.++-|..|
T Consensus 308 ~~~~i~~i~~D~~g~lW-igt~~~Gl~~~~~~~~~---~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~ 382 (795)
T 4a2l_A 308 SQRSVRSIFMDSQGGMW-LGTYFGGLNYYHPIRNR---FKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLY 382 (795)
T ss_dssp SSSCEEEEEECTTSCEE-EEESSSCEEEECGGGGS---SEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEE
T ss_pred CCCcEEEEEEeCCcCEE-EEECCCCeEEeCCCccc---ceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEE
Confidence 44679999999988754 56666778888765332 222211 235688998888776 4456666679999
Q ss_pred ECCCCceeeecccc-----ccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-----ecCcEEEEEEecC
Q 043172 334 DLVKAKADKIGPLV-----GREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK-----MNGTVRSLAFADD 403 (564)
Q Consensus 334 dl~~~~~~~~~~~~-----~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~-----~~~~V~~l~~spd 403 (564)
+..++......... +.....|.++...++|+.|.+|+.++-|.+|+..+++...... ....|.++...++
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~ 462 (795)
T 4a2l_A 383 NPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGE 462 (795)
T ss_dssp CTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSS
T ss_pred cCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCC
Confidence 99887765432211 1122468899998888856677777779999998877544321 2457899998888
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeEEEee-----cCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEc
Q 043172 404 GKQLLSSGGDGQVYHWDLRTRTCIHRAVD-----EGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTI 478 (564)
Q Consensus 404 g~~l~s~s~dg~V~lwD~~~~~~~~~~~~-----~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~ 478 (564)
|++.+ |+. +.|.+||..+++....... .....+.++...++|++.+ |+. +-|.+|+.... .. .+
T Consensus 463 g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~-~Gl~~~~~~~~-----~~--~~ 531 (795)
T 4a2l_A 463 GNLWL-GTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWI-GGE-EGLSVFKQEGL-----DI--QK 531 (795)
T ss_dssp SCEEE-EES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEE-EES-SCEEEEEEETT-----EE--EE
T ss_pred CCEEE-Eec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEE-EeC-CceEEEeCCCC-----eE--EE
Confidence 87554 445 4589999887654332211 1124578898988887544 444 45888887654 22 11
Q ss_pred c-------ccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCC-CCCCCcEEEEEeCCCCEEEEEcCC
Q 043172 479 E-------NLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPAN-RNLQYPRCLDFSPGGGFMAVGNAA 550 (564)
Q Consensus 479 ~-------~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~-~~~~~V~~l~fspdg~~Lasgs~d 550 (564)
. .....|.++...++|.+.+ ++. . .|..|+..+.... .+.... -+...|.++...++|.+.+++ ..
T Consensus 532 ~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~--~-Gl~~~d~~~~~~~-~~~~~~gl~~~~i~~i~~d~~g~lWi~t-~~ 605 (795)
T 4a2l_A 532 ASILPVSNVTKLFTNCIYEASNGIIWV-GTR--E-GFYCFNEKDKQIK-RYNTTNGLPNNVVYGILEDSFGRLWLST-NR 605 (795)
T ss_dssp CCCSCSCGGGGSCEEEEEECTTSCEEE-EES--S-CEEEEETTTTEEE-EECGGGTCSCSCEEEEEECTTSCEEEEE-TT
T ss_pred ecCCCCCCCCCCeeEEEEECCCCCEEE-EeC--C-CceeECCCCCcEE-EeCCCCCCchhheEEEEECCCCCEEEEc-CC
Confidence 1 1235788999989988655 443 3 5888887765432 222211 123568899999998866655 44
Q ss_pred CeEEEEEcC
Q 043172 551 GKVFLYKLN 559 (564)
Q Consensus 551 G~V~lw~l~ 559 (564)
| |..|+..
T Consensus 606 G-l~~~~~~ 613 (795)
T 4a2l_A 606 G-ISCFNPE 613 (795)
T ss_dssp E-EEEEETT
T ss_pred c-eEEEcCC
Confidence 4 6666654
No 253
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.85 E-value=3.5e-07 Score=101.02 Aligned_cols=274 Identities=15% Similarity=0.072 Sum_probs=169.3
Q ss_pred CCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCc----------Ce-EEEEEeeCCCEEEEEeCCCeEEEEECCCCceee
Q 043172 274 AQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDC----------PV-RKASFLPDGSQAIIAGRRKFFYSLDLVKAKADK 342 (564)
Q Consensus 274 g~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~----------~I-~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~ 342 (564)
+..|++++.++.|.-+|..+ ...+-....... .+ ..+++ .+..|++++.++.|+.+|..+|+..-
T Consensus 66 ~g~vyv~~~~~~v~AlD~~t--G~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 141 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAAS--GKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIW 141 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTT--CCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEECCCCeEEEEECCC--ChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEee
Confidence 45666777778887777653 334444332211 00 11222 35688888889999999999998754
Q ss_pred eccccccCC-cceEE-EEEcCCCCEEEEEeC------CCeEEEEECCCCcEEEEeeec--C-------------------
Q 043172 343 IGPLVGREE-KSLEF-FEVSPDSSVIAFVGN------EGYILLVSSKTKELIGTLKMN--G------------------- 393 (564)
Q Consensus 343 ~~~~~~~~~-~~v~~-~~~spdg~~la~~~~------dg~I~lwd~~t~~~~~~~~~~--~------------------- 393 (564)
......... ..+.+ ..+ .+..++++.. +|.|..+|..+|+.+..+... .
T Consensus 142 ~~~~~~~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g 219 (668)
T 1kv9_A 142 SQQTTDPAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQG 219 (668)
T ss_dssp EEECSCTTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCS
T ss_pred eeccCCCCCcceecCCCEE--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCc
Confidence 332211100 00100 011 1334555443 589999999999998877521 0
Q ss_pred -----------cEEEEEEecCCCEEEEEeCCCe-------------------EEEEECCCCceeEEEeecC-C-------
Q 043172 394 -----------TVRSLAFADDGKQLLSSGGDGQ-------------------VYHWDLRTRTCIHRAVDEG-C------- 435 (564)
Q Consensus 394 -----------~V~~l~~spdg~~l~s~s~dg~-------------------V~lwD~~~~~~~~~~~~~~-~------- 435 (564)
....+++.|....+++++.++. |+.+|+.+++.+-.+...+ .
T Consensus 220 ~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~ 299 (668)
T 1kv9_A 220 DQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTAT 299 (668)
T ss_dssp SCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCC
T ss_pred cceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCC
Confidence 0124688888888888887764 9999999999887776431 1
Q ss_pred cceEEEEECCCCC---EEEEEeCCCcEEEEeCCcccCCcceeeEEccccc------------cc----------------
Q 043172 436 INGTALCTSPDGT---FFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLT------------TK---------------- 484 (564)
Q Consensus 436 ~~i~~l~~sp~g~---~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~------------~~---------------- 484 (564)
.......+..+|+ .+++++.+|.++++|..++ +++....... .+
T Consensus 300 ~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG-----~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~ 374 (668)
T 1kv9_A 300 QQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNG-----KLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMW 374 (668)
T ss_dssp SCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTC-----CEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEES
T ss_pred CCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCC-----CEeccccccccccccccccccCCccccccccccCCeeEEC
Confidence 1122222223564 6889999999999999887 4442211000 00
Q ss_pred --------eeEEEEcCCCcEEEEEec----------------------------------CCCCeEEEEEcCCCceeccC
Q 043172 485 --------VDFMKFNNDAQILAICST----------------------------------MKKNSLKLIHIPSYNVFSNW 522 (564)
Q Consensus 485 --------I~~l~fspdg~~La~~s~----------------------------------~~d~~I~lwdl~s~~~~~~~ 522 (564)
-..++++|+..++++... ..++.|..||+.+++..-..
T Consensus 375 p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~ 454 (668)
T 1kv9_A 375 PSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKV 454 (668)
T ss_dssp SCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEE
T ss_pred CCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEc
Confidence 112678888777665321 01378999999999876544
Q ss_pred CCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCCCC
Q 043172 523 PPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNHYH 562 (564)
Q Consensus 523 ~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~~~ 562 (564)
+.. ..+....+...+.++++|+.+|.|++||..+.+
T Consensus 455 ~~~----~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~ 490 (668)
T 1kv9_A 455 PYP----THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGE 490 (668)
T ss_dssp EES----SSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred cCC----CCCcCceeEeCCCEEEEECCcccchhhhhhcCh
Confidence 332 122333455678889999999999999988764
No 254
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.83 E-value=4.6e-07 Score=86.55 Aligned_cols=181 Identities=11% Similarity=0.128 Sum_probs=126.4
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEE-eCCCeEEEEECCCCceeEEEee
Q 043172 354 LEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSS-GGDGQVYHWDLRTRTCIHRAVD 432 (564)
Q Consensus 354 v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~-s~dg~V~lwD~~~~~~~~~~~~ 432 (564)
...+.|+ ++.++.+.+.+|.|.++|+.+++.+..+ ...........+++..|+.. -.++.+.+||..+.+.+.++..
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~ 134 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRY 134 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEEC
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeC
Confidence 4678887 4667777788899999999999998887 55554443333444445444 4588999999999999998876
Q ss_pred cCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccc--cc---cceeEEEEcCCCcEEEEEecCCCCe
Q 043172 433 EGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIEN--LT---TKVDFMKFNNDAQILAICSTMKKNS 507 (564)
Q Consensus 433 ~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~--~~---~~I~~l~fspdg~~La~~s~~~d~~ 507 (564)
... ...++ ++++.|+....++.|.++|..+. +.+.++.- .. ..++.+.|. +|+ |.+... ..+.
T Consensus 135 ~~e--GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~-----~v~~~I~V~~~g~~v~~lNeLe~~-dG~-lyanvw-~s~~ 202 (268)
T 3nok_A 135 SGE--GWGLC--YWNGKLVRSDGGTMLTFHEPDGF-----ALVGAVQVKLRGQPVELINELECA-NGV-IYANIW-HSSD 202 (268)
T ss_dssp SSC--CCCEE--EETTEEEEECSSSEEEEECTTTC-----CEEEEEECEETTEECCCEEEEEEE-TTE-EEEEET-TCSE
T ss_pred CCc--eeEEe--cCCCEEEEECCCCEEEEEcCCCC-----eEEEEEEeCCCCcccccccccEEe-CCE-EEEEEC-CCCe
Confidence 432 23444 56777777777899999999887 66665542 11 244667777 775 444443 2789
Q ss_pred EEEEEcCCCceeccCCCC----------CCCCCCcEEEEEeCCCCEEEEEc
Q 043172 508 LKLIHIPSYNVFSNWPPA----------NRNLQYPRCLDFSPGGGFMAVGN 548 (564)
Q Consensus 508 I~lwdl~s~~~~~~~~~~----------~~~~~~V~~l~fspdg~~Lasgs 548 (564)
|.+.|..++++...+... .......+.|+|+|+++.|++.+
T Consensus 203 I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 203 VLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 999999999987766542 11224568999999766554443
No 255
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.82 E-value=1.6e-06 Score=90.40 Aligned_cols=243 Identities=8% Similarity=0.056 Sum_probs=144.4
Q ss_pred CeEEEEEee-CCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCC-----CeEEEEECC
Q 043172 308 PVRKASFLP-DGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNE-----GYILLVSSK 381 (564)
Q Consensus 308 ~I~~l~fsp-dg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-----g~I~lwd~~ 381 (564)
....++|+| ++..|+++...+.|+.+|+.++....+.. .......++|+++|++|+++... ..+.+++.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~----~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~- 212 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS----GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR- 212 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC----CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec----CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-
Confidence 356889998 46667777655889999998877654422 22357899999999977766542 13444443
Q ss_pred CCcEE--EEeeecCcEEEEEEec-CCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEE-EEEeCCC
Q 043172 382 TKELI--GTLKMNGTVRSLAFAD-DGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFF-AAGSDSG 457 (564)
Q Consensus 382 t~~~~--~~~~~~~~V~~l~~sp-dg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l-asgs~dg 457 (564)
.+... ..+.......+++++| ++.++++-..++.|+.|+...+................++|+|+|++| ++-...+
T Consensus 213 ~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~ 292 (430)
T 3tc9_A 213 ESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQH 292 (430)
T ss_dssp GGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTT
T ss_pred CCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCC
Confidence 33222 2333334567888999 677666666778999999987654333332222345789999999954 4455678
Q ss_pred cEEEEeCCcccCCcceeeEEcccc---------------cccee-EEEEc--------CCCcEEEEEecCCCCeEEEEEc
Q 043172 458 IVNVYNRQEFLGGKRKPIKTIENL---------------TTKVD-FMKFN--------NDAQILAICSTMKKNSLKLIHI 513 (564)
Q Consensus 458 ~V~iwd~~~~~~~~~~~~~~~~~~---------------~~~I~-~l~fs--------pdg~~La~~s~~~d~~I~lwdl 513 (564)
.|.+++..... .....+.++.+. -.... .++.. ++|.++++-.. .+.|+.++
T Consensus 293 ~I~~~~~d~~~-~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~--n~~I~~i~- 368 (430)
T 3tc9_A 293 YILRSDYDWKT-KRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRE--NHCIRILT- 368 (430)
T ss_dssp EEEEEEEETTT-TEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGG--GTEEEEEC-
T ss_pred EEEEEeCCccc-ccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECC--CcEEEEEC-
Confidence 89998765310 000001111110 11122 45553 33554444444 67888888
Q ss_pred CCCceeccCCC--------------CCCCCCCcEEEEEeCC-CCEEEEEcCCCeEEEEEcC
Q 043172 514 PSYNVFSNWPP--------------ANRNLQYPRCLDFSPG-GGFMAVGNAAGKVFLYKLN 559 (564)
Q Consensus 514 ~s~~~~~~~~~--------------~~~~~~~V~~l~fspd-g~~Lasgs~dG~V~lw~l~ 559 (564)
+.+......-. ..........|+++|+ +.++++-....+|+.+++.
T Consensus 369 ~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 369 PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 45543322111 0112346899999995 5555555567788887763
No 256
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.79 E-value=1.6e-05 Score=79.57 Aligned_cols=278 Identities=14% Similarity=0.121 Sum_probs=149.4
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCC-CCceeEE-EEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCc
Q 043172 262 TGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGK-RNTKIQS-IFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAK 339 (564)
Q Consensus 262 ~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~-~~~~~~~-~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~ 339 (564)
...+.+|.|.+.+..+++ +..+.| +...+++ +...+.. .......+.++.|.+ + .+++++..+.|+. ....|+
T Consensus 35 ~~~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~-~~~~~g~~g~i~~-S~DgG~ 109 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-N-EGWIVGEPPIMLH-TTDGGQ 109 (327)
T ss_dssp SSCEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-T-EEEEEEETTEEEE-ESSTTS
T ss_pred CCcEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-C-eEEEEECCCeEEE-ECCCCC
Confidence 357999999988877774 456755 3333432 2222211 011244688899976 3 4555566665554 333333
Q ss_pred e-eeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCC-cEEEEee-ecCcEEEEEEecCCCEEEEEeCCCeE
Q 043172 340 A-DKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTK-ELIGTLK-MNGTVRSLAFADDGKQLLSSGGDGQV 416 (564)
Q Consensus 340 ~-~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~-~~~~~~~-~~~~V~~l~~spdg~~l~s~s~dg~V 416 (564)
. ..+....... ..+..+.+.+++..++++ ..|.|..- ...+ .+..... ....+..+++.|++.+++++. .|.|
T Consensus 110 tW~~~~~~~~~~-~~~~~i~~~~~~~~~~~~-~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~-~G~~ 185 (327)
T 2xbg_A 110 SWSQIPLDPKLP-GSPRLIKALGNGSAEMIT-NVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSS-RGSF 185 (327)
T ss_dssp SCEECCCCTTCS-SCEEEEEEEETTEEEEEE-TTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECTTSCEEEEET-TSSE
T ss_pred CceECccccCCC-CCeEEEEEECCCCEEEEe-CCccEEEE-cCCCCCCEEeecCCCcceEEEEEcCCCcEEEEEC-CCcE
Confidence 2 2221111111 236677777777666655 45544332 2223 2333222 456789999999888776654 4555
Q ss_pred EE-EECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEc-cccccceeEEEEcCCC
Q 043172 417 YH-WDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTI-ENLTTKVDFMKFNNDA 494 (564)
Q Consensus 417 ~l-wD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~-~~~~~~I~~l~fspdg 494 (564)
+. +|- .+..-..+.......+..+++.++++.++ ++.+|.+.++....+ .....+..- ......+..+.+.+++
T Consensus 186 ~~S~d~-gG~tW~~~~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G--~tW~~~~~~~~~~~~~~~~v~~~~~~ 261 (327)
T 2xbg_A 186 YSTWEP-GQTAWEPHNRTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNS--ENWGELLSPLRRNSVGFLDLAYRTPN 261 (327)
T ss_dssp EEEECT-TCSSCEEEECCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEE--EEECCCBCTTSSCCSCEEEEEESSSS
T ss_pred EEEeCC-CCCceeECCCCCCCccceeEECCCCCEEE-EeCCceEEEecCCCC--CeeEeccCCcccCCcceEEEEecCCC
Confidence 44 332 12222222223334678888999887664 456788777643322 111222111 0122357889999988
Q ss_pred cEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEE
Q 043172 495 QILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYK 557 (564)
Q Consensus 495 ~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~ 557 (564)
.+++++. ++.| ++....+.....+.........+.++.|.+++. +++++.+|.|.-++
T Consensus 262 ~~~~~g~---~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 262 EVWLAGG---AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV 319 (327)
T ss_dssp CEEEEES---TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred EEEEEeC---CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence 8777765 5666 444544543332221111124577888986655 55556788776655
No 257
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.79 E-value=1.2e-06 Score=95.01 Aligned_cols=276 Identities=10% Similarity=0.001 Sum_probs=164.4
Q ss_pred CCEEEEEeC-CCcEEEEEe-cCCCCceeEEEEeCCc-----------CeEEEEEeeCCCE----EEEEeCCCeEEEEECC
Q 043172 274 AQLLLVAGL-DRRLRFFQI-DGKRNTKIQSIFLEDC-----------PVRKASFLPDGSQ----AIIAGRRKFFYSLDLV 336 (564)
Q Consensus 274 g~~l~s~s~-dg~I~lwd~-~~~~~~~~~~~~~~~~-----------~I~~l~fspdg~~----l~s~~~dg~i~iwdl~ 336 (564)
+..|++++. ++.|.-+|. .+ ...+-....... ....++++|.+.. |++++.++.|+.+|..
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~t--G~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~ 139 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDP--GTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAE 139 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCT--TSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETT
T ss_pred CCEEEEEeCCCCEEEEEeCCCC--CcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECC
Confidence 445666666 777777776 43 334433332211 0123455544445 8888889999999999
Q ss_pred CCceeeeccccccCC-cceE-EEEEcCCCCEEEEEe------CCCeEEEEECCCCcEEEEeeecCcE-------------
Q 043172 337 KAKADKIGPLVGREE-KSLE-FFEVSPDSSVIAFVG------NEGYILLVSSKTKELIGTLKMNGTV------------- 395 (564)
Q Consensus 337 ~~~~~~~~~~~~~~~-~~v~-~~~~spdg~~la~~~------~dg~I~lwd~~t~~~~~~~~~~~~V------------- 395 (564)
+|+..-...+..+.. ..+. ...+. ++ .+++++ .+|.|+.+|..+++.+..+......
T Consensus 140 TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~ 217 (599)
T 1w6s_A 140 TGETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKN 217 (599)
T ss_dssp TCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTC
T ss_pred CCCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccc
Confidence 998753322222100 0111 01111 34 455554 3799999999999998877632211
Q ss_pred --------------------------EEEEEecCCCEEEEEeCC----------------CeEEEEECCCCceeEEEeec
Q 043172 396 --------------------------RSLAFADDGKQLLSSGGD----------------GQVYHWDLRTRTCIHRAVDE 433 (564)
Q Consensus 396 --------------------------~~l~~spdg~~l~s~s~d----------------g~V~lwD~~~~~~~~~~~~~ 433 (564)
..+++.+....++.++.+ +.|..+|..+++.+-.+...
T Consensus 218 ~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~ 297 (599)
T 1w6s_A 218 PHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKT 297 (599)
T ss_dssp GGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESS
T ss_pred ccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecC
Confidence 134566777778877665 38999999999988776653
Q ss_pred CCc--------ceEEEEEC-CCC---CEEEEEeCCCcEEEEeCCcccCCcceeeEEcccc-------------ccce---
Q 043172 434 GCI--------NGTALCTS-PDG---TFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENL-------------TTKV--- 485 (564)
Q Consensus 434 ~~~--------~i~~l~~s-p~g---~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~-------------~~~I--- 485 (564)
+.. ...-+... .+| ..++.++.+|.+.++|..++ +++...... ..++
T Consensus 298 ~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG-----~~lw~~~~~~~~~~~~~~~~~~g~p~~~~ 372 (599)
T 1w6s_A 298 PHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDG-----ALVSANKLDDTVNVFKSVDLKTGQPVRDP 372 (599)
T ss_dssp TTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTC-----CEEEEEESSTTCCSEEEECTTTCCEEECG
T ss_pred CCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCC-----CEeecccccCCcccccccccCCCceeecc
Confidence 210 11112222 467 46778899999999999887 444332210 0011
Q ss_pred -----------------------eEEEEcCCCcEEEEEec-------------------------------C------CC
Q 043172 486 -----------------------DFMKFNNDAQILAICST-------------------------------M------KK 505 (564)
Q Consensus 486 -----------------------~~l~fspdg~~La~~s~-------------------------------~------~d 505 (564)
..++|+|+.+++++... . ..
T Consensus 373 ~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~ 452 (599)
T 1w6s_A 373 EYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGL 452 (599)
T ss_dssp GGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCC
T ss_pred ccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCc
Confidence 24677887777665421 0 14
Q ss_pred CeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCCCC
Q 043172 506 NSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNHYH 562 (564)
Q Consensus 506 ~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~~~ 562 (564)
+.|..||+.+++..-..+... ++.+-.+...+.++++++.||.|+.||..+.+
T Consensus 453 G~l~A~D~~tG~~~W~~~~~~----~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~ 505 (599)
T 1w6s_A 453 GQIKAYNAITGDYKWEKMERF----AVWGGTMATAGDLVFYGTLDGYLKARDSDTGD 505 (599)
T ss_dssp EEEEEECTTTCCEEEEEEESS----CCCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred CeEEEEECCCCCEEeEecCCC----CccCcceEecCCEEEEECCCCeEEEEECCCCC
Confidence 678888888887654432211 11111123356778889999999999988765
No 258
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.78 E-value=3.2e-06 Score=93.22 Aligned_cols=262 Identities=15% Similarity=0.132 Sum_probs=162.9
Q ss_pred CCEEEEEeCCCcEEEEEecCCCCceeEEEEeCC----cCeEEEEEeeCCCEEEEEeC------CCeEEEEECCCCceeee
Q 043172 274 AQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLED----CPVRKASFLPDGSQAIIAGR------RKFFYSLDLVKAKADKI 343 (564)
Q Consensus 274 g~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~----~~I~~l~fspdg~~l~s~~~------dg~i~iwdl~~~~~~~~ 343 (564)
+..|++++.++.|..+|..++ ..+-...... ..+.+.-.- .+..++++.. ++.|+.+|..+|+..-.
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG--~~~W~~~~~~~~~~~~~~~~P~v-~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 193 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTG--KAIWSQQTTDPAKPYSITGAPRV-VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWR 193 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTC--CEEEEEECSCTTSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCC--CEeeeeccCCCCCcceecCCCEE-ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEE
Confidence 457888888999999887643 3444444321 111110011 1345555543 58999999999987533
Q ss_pred cccc-ccC---------------------------CcceEEEEEcCCCCEEEEEeCCC-------------------eEE
Q 043172 344 GPLV-GRE---------------------------EKSLEFFEVSPDSSVIAFVGNEG-------------------YIL 376 (564)
Q Consensus 344 ~~~~-~~~---------------------------~~~v~~~~~spdg~~la~~~~dg-------------------~I~ 376 (564)
.... +.. ......+++.|...+++++..++ .|.
T Consensus 194 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~ 273 (668)
T 1kv9_A 194 FYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSIL 273 (668)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred ecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence 2211 100 00112468888888888887766 499
Q ss_pred EEECCCCcEEEEeeec----------CcEEEEEEecCCC---EEEEEeCCCeEEEEECCCCceeEEEeecC---------
Q 043172 377 LVSSKTKELIGTLKMN----------GTVRSLAFADDGK---QLLSSGGDGQVYHWDLRTRTCIHRAVDEG--------- 434 (564)
Q Consensus 377 lwd~~t~~~~~~~~~~----------~~V~~l~~spdg~---~l~s~s~dg~V~lwD~~~~~~~~~~~~~~--------- 434 (564)
.+|..+++.+..+... .++....+..+|+ .|++++.+|.++++|..+++.+.......
T Consensus 274 AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~ 353 (668)
T 1kv9_A 274 AIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDL 353 (668)
T ss_dssp EECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECT
T ss_pred EEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccccc
Confidence 9999999998887621 2333334444675 68889999999999999999874432111
Q ss_pred --C------------------------cceEEEEECCCCCEEEEEe----------------------------------
Q 043172 435 --C------------------------INGTALCTSPDGTFFAAGS---------------------------------- 454 (564)
Q Consensus 435 --~------------------------~~i~~l~~sp~g~~lasgs---------------------------------- 454 (564)
. ..-..++++|+...+++..
T Consensus 354 ~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~ 433 (668)
T 1kv9_A 354 ATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPA 433 (668)
T ss_dssp TTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCG
T ss_pred ccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCC
Confidence 0 0001257777766655421
Q ss_pred --CCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCc
Q 043172 455 --DSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYP 532 (564)
Q Consensus 455 --~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V 532 (564)
.+|.|..||+.++ +.+...... .++....+...+.++++++. ++.|++||..+++.+..+........
T Consensus 434 ~~~~g~l~A~D~~tG-----~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~--dg~l~a~d~~tG~~l~~~~~~~~~~~-- 503 (668)
T 1kv9_A 434 AVVSGALLAWDPVKQ-----KAAWKVPYP-THWNGGTLSTAGNLVFQGTA--AGQMHAYSADKGEALWQFEAQSGIVA-- 503 (668)
T ss_dssp GGCEEEEEEEETTTT-----EEEEEEEES-SSCCCCEEEETTTEEEEECT--TSEEEEEETTTCCEEEEEECSSCCCS--
T ss_pred CCccceEEEEeCCCC-----cEEEEccCC-CCCcCceeEeCCCEEEEECC--cccchhhhhhcChhheEecCCCCccc--
Confidence 2377888998887 666555432 33333445557788888877 99999999999998876655432222
Q ss_pred EEEEEeCCCC-EEEEEc
Q 043172 533 RCLDFSPGGG-FMAVGN 548 (564)
Q Consensus 533 ~~l~fspdg~-~Lasgs 548 (564)
.-+.+..+|+ |+++++
T Consensus 504 ~p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 504 APMTFELAGRQYVAIMA 520 (668)
T ss_dssp CCEEEEETTEEEEEEEE
T ss_pred CceEEEECCEEEEEEEe
Confidence 2244455666 555443
No 259
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.78 E-value=2.8e-06 Score=81.13 Aligned_cols=181 Identities=13% Similarity=0.051 Sum_probs=125.6
Q ss_pred eEEEEEeeCCCEEEEEeCCC--eEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEE-eCCCeEEEEECCCCcE
Q 043172 309 VRKASFLPDGSQAIIAGRRK--FFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFV-GNEGYILLVSSKTKEL 385 (564)
Q Consensus 309 I~~l~fspdg~~l~s~~~dg--~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~~dg~I~lwd~~t~~~ 385 (564)
...+.|+ ++..+.+++.+| .|+++|+.+++......+.... --..+++ .+..|+.. -.++.+.+||..+.+.
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~--FgeGit~--~g~~ly~ltw~~~~v~v~D~~t~~~ 119 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRY--FGEGISD--WKDKIVGLTWKNGLGFVWNIRNLRQ 119 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTC--CEEEEEE--ETTEEEEEESSSSEEEEEETTTCCE
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCcc--ceeEEEE--eCCEEEEEEeeCCEEEEEECccCcE
Confidence 4678888 665556666655 8999999999987655443221 1223444 35555544 4579999999999999
Q ss_pred EEEeeecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecC-C---cceEEEEECCCCCEEEEEeCCCcEEE
Q 043172 386 IGTLKMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEG-C---INGTALCTSPDGTFFAAGSDSGIVNV 461 (564)
Q Consensus 386 ~~~~~~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~-~---~~i~~l~~sp~g~~lasgs~dg~V~i 461 (564)
+.++..... ...+++++..|+.+..++.|+++|..+.+.+.++.... . ..+..+.|. +|+.+|..-.+..|.+
T Consensus 120 ~~ti~~~~e--G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~v 196 (262)
T 3nol_A 120 VRSFNYDGE--GWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVR 196 (262)
T ss_dssp EEEEECSSC--CCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEE
T ss_pred EEEEECCCC--ceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEE
Confidence 999985442 23344677777777767899999999999888776521 1 123446665 6766655557889999
Q ss_pred EeCCcccCCcceeeEEcccc------------ccceeEEEEcCCCcEEEEEec
Q 043172 462 YNRQEFLGGKRKPIKTIENL------------TTKVDFMKFNNDAQILAICST 502 (564)
Q Consensus 462 wd~~~~~~~~~~~~~~~~~~------------~~~I~~l~fspdg~~La~~s~ 502 (564)
.|..++ +.+..+.-. ....+.|+|+|+++.|++++.
T Consensus 197 IDp~tG-----~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 197 IDPETG-----KVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp ECTTTC-----BEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EECCCC-----cEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 999987 665555321 135588999999888887774
No 260
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.75 E-value=1.4e-05 Score=89.96 Aligned_cols=284 Identities=10% Similarity=-0.027 Sum_probs=173.6
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEE-------E-----EeCCcCeEEEEEeeCCCEEEEEeCCCe
Q 043172 262 TGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQS-------I-----FLEDCPVRKASFLPDGSQAIIAGRRKF 329 (564)
Q Consensus 262 ~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~-------~-----~~~~~~I~~l~fspdg~~l~s~~~dg~ 329 (564)
...|.++...++|.+. .|+..+-|.+++........... . ......|.++...++|. |-+|+.++-
T Consensus 257 ~~~i~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~G 334 (781)
T 3v9f_A 257 SSYIFSIKQLKDNKLW-IATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGG 334 (781)
T ss_dssp CCCEEEEEECTTSEEE-EEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSC
T ss_pred CceEEEEEECCCCCEE-EEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCe
Confidence 4679999999888654 45554568888776433221111 0 01345788998888876 455665666
Q ss_pred EEEEECCCCceeeeccc------cccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe---e-ecCcEEEEE
Q 043172 330 FYSLDLVKAKADKIGPL------VGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTL---K-MNGTVRSLA 399 (564)
Q Consensus 330 i~iwdl~~~~~~~~~~~------~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~---~-~~~~V~~l~ 399 (564)
|..|+..++........ .+.....|.++...++|.+. +|+.++-|..|+..++...... . ....|.++.
T Consensus 335 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 413 (781)
T 3v9f_A 335 INFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLW-IGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSL 413 (781)
T ss_dssp EEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEE-EEEBSSCEEEEETTEEEEECC-----CCCSBEEEEE
T ss_pred EEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEE-EEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEE
Confidence 88898877654433211 11122468899888887654 5565566889998765443211 1 245789998
Q ss_pred EecCCCEEEEEeCCCeEEEEECCCCceeEEEee--cCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEE
Q 043172 400 FADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVD--EGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKT 477 (564)
Q Consensus 400 ~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~--~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~ 477 (564)
..++|. |.+|+.++.|..++..+++.. .+.. .....|.++...++|. |.+|+. +-|.+|+..+. ....+..
T Consensus 414 ~d~~g~-lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~---~~~~~~~ 486 (781)
T 3v9f_A 414 KDSEGN-LWFGTYLGNISYYNTRLKKFQ-IIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASK---KVIHHYD 486 (781)
T ss_dssp ECTTSC-EEEEETTEEEEEECSSSCEEE-ECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSS---SCCEEEC
T ss_pred ECCCCC-EEEEeccCCEEEEcCCCCcEE-EeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCC---eEEeccc
Confidence 887776 555777678999998876543 2321 1234678888888775 445555 56888988764 1111111
Q ss_pred cc---ccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCC-CCCCCCCcEEEEEeCCCCEEEEEcCCCeE
Q 043172 478 IE---NLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPP-ANRNLQYPRCLDFSPGGGFMAVGNAAGKV 553 (564)
Q Consensus 478 ~~---~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~-~~~~~~~V~~l~fspdg~~Lasgs~dG~V 553 (564)
.. .....|.++...++|.+.+... .+-|..|+..+..... +.. ..-+...|.++...++|.+.++. ..|.|
T Consensus 487 ~~~~~~~~~~i~~i~~d~~g~lWigt~---~~Gl~~~~~~~~~~~~-~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv 561 (781)
T 3v9f_A 487 TSNSQLLENFVRSIAQDSEGRFWIGTF---GGGVGIYTPDMQLVRK-FNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLV 561 (781)
T ss_dssp TTTSSCSCSCEEEEEECTTCCEEEEES---SSCEEEECTTCCEEEE-ECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEE
T ss_pred CcccccccceeEEEEEcCCCCEEEEEc---CCCEEEEeCCCCeEEE-ccCCCCCCCCeeEEEEECCCCCEEEEE-CCCce
Confidence 11 1136788999999988665443 3447778876654322 221 11234578999999998866554 47754
Q ss_pred EEEEcCC
Q 043172 554 FLYKLNH 560 (564)
Q Consensus 554 ~lw~l~~ 560 (564)
..|+...
T Consensus 562 ~~~d~~~ 568 (781)
T 3v9f_A 562 CFPSARN 568 (781)
T ss_dssp EESCTTT
T ss_pred EEECCCC
Confidence 7777543
No 261
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.72 E-value=2.2e-06 Score=81.79 Aligned_cols=179 Identities=11% Similarity=0.150 Sum_probs=125.5
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEe-CCCeEEEEECCCCcee
Q 043172 263 GPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAG-RRKFFYSLDLVKAKAD 341 (564)
Q Consensus 263 ~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~-~dg~i~iwdl~~~~~~ 341 (564)
.-...|.|+. +.++++.+.+|.|+++|+.+. +.+..+ ... ........+.++.|+... .++.+.+||..+.+..
T Consensus 55 ~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tg--kv~~~~-l~~-~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~ 129 (268)
T 3nok_A 55 AFTQGLVFHQ-GHFFESTGHQGTLRQLSLESA--QPVWME-RLG-NIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRE 129 (268)
T ss_dssp CCEEEEEEET-TEEEEEETTTTEEEECCSSCS--SCSEEE-ECT-TCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEE
T ss_pred cccceEEEEC-CEEEEEcCCCCEEEEEECCCC--cEEeEE-CCC-CcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEE
Confidence 4468999984 667778888899999988744 455555 332 333433444566666554 6889999999999876
Q ss_pred eeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeeec------CcEEEEEEecCCCEEEEEeCCCe
Q 043172 342 KIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLKMN------GTVRSLAFADDGKQLLSSGGDGQ 415 (564)
Q Consensus 342 ~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~~~------~~V~~l~~spdg~~l~s~s~dg~ 415 (564)
......+. ...++++++.|+.+..++.|.++|..+.+.+..+... ..++.+.|. +|+..+.......
T Consensus 130 ~ti~~~~e------GwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~ 202 (268)
T 3nok_A 130 RTTRYSGE------GWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSD 202 (268)
T ss_dssp EEEECSSC------CCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSE
T ss_pred EEEeCCCc------eeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCe
Confidence 55444321 1233467888887777899999999999999888721 245778887 7765555546789
Q ss_pred EEEEECCCCceeEEEeecC------------CcceEEEEECCCCC-EEEEE
Q 043172 416 VYHWDLRTRTCIHRAVDEG------------CINGTALCTSPDGT-FFAAG 453 (564)
Q Consensus 416 V~lwD~~~~~~~~~~~~~~------------~~~i~~l~~sp~g~-~lasg 453 (564)
|.+.|..+++.+..+...+ ..-...||++|+++ ++++|
T Consensus 203 I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 203 VLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 9999999999988876431 12357899999755 55555
No 262
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.72 E-value=6.3e-06 Score=85.93 Aligned_cols=244 Identities=11% Similarity=0.050 Sum_probs=144.9
Q ss_pred CeEEEEEeeC--CCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCC-----CeEEEEEC
Q 043172 308 PVRKASFLPD--GSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNE-----GYILLVSS 380 (564)
Q Consensus 308 ~I~~l~fspd--g~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-----g~I~lwd~ 380 (564)
....++|+|+ ...|+++...+.|+.+++.++....+.. .......++++++|+ |+++... ..+..++.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~----~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~ 214 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT----NIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTR 214 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC----CCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECG
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec----CCCCccEEEECCCCC-EEEEcCCCCcccceEEEEEC
Confidence 3568999984 4566666544889999998887654422 222578999999999 5554432 12444443
Q ss_pred CCCcE-EEEeeecCcEEEEEEec-CCCEEEEEeCCCeEEEEECCCCceeEEEee-cCCcceEEEEECCCCCEEE-EEeCC
Q 043172 381 KTKEL-IGTLKMNGTVRSLAFAD-DGKQLLSSGGDGQVYHWDLRTRTCIHRAVD-EGCINGTALCTSPDGTFFA-AGSDS 456 (564)
Q Consensus 381 ~t~~~-~~~~~~~~~V~~l~~sp-dg~~l~s~s~dg~V~lwD~~~~~~~~~~~~-~~~~~i~~l~~sp~g~~la-sgs~d 456 (564)
..+.. ...+..-.....++++| +|.++++-..++.|+.+|..++.....+.. ........++|+|++++|+ +-...
T Consensus 215 ~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~ 294 (433)
T 4hw6_A 215 ASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGK 294 (433)
T ss_dssp GGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTT
T ss_pred CCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCC
Confidence 22211 11222334567789999 666555555678999999987766333322 2222234699999999554 44567
Q ss_pred CcEEEEeCCcccCC--cceeeEEc-c-----------ccccceeEEEE---------cCCCcEEEEEecCCCCeEEEEEc
Q 043172 457 GIVNVYNRQEFLGG--KRKPIKTI-E-----------NLTTKVDFMKF---------NNDAQILAICSTMKKNSLKLIHI 513 (564)
Q Consensus 457 g~V~iwd~~~~~~~--~~~~~~~~-~-----------~~~~~I~~l~f---------spdg~~La~~s~~~d~~I~lwdl 513 (564)
+.|..++....... .+..+.-. . ..-.....+++ .++|.++++-.. .+.|+.++.
T Consensus 295 ~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~--n~~I~~~~~ 372 (433)
T 4hw6_A 295 HCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRD--SHTVRVLTP 372 (433)
T ss_dssp TEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETT--TTEEEEECT
T ss_pred CEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECC--CCEEEEECC
Confidence 88999876521000 00111110 0 01123567899 666766655444 788999984
Q ss_pred CCCceeccCCC--------------CCCCCCCcEEEEEe-CCCCEEEEEcCCCeEEEEEcC
Q 043172 514 PSYNVFSNWPP--------------ANRNLQYPRCLDFS-PGGGFMAVGNAAGKVFLYKLN 559 (564)
Q Consensus 514 ~s~~~~~~~~~--------------~~~~~~~V~~l~fs-pdg~~Lasgs~dG~V~lw~l~ 559 (564)
++.+....-. ..........|+++ ++|.++++=...++|+.+++.
T Consensus 373 -~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 373 -EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp -TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred -CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 5543321111 01123457899999 566666665667788888764
No 263
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.70 E-value=7.6e-06 Score=77.39 Aligned_cols=184 Identities=13% Similarity=0.033 Sum_probs=125.4
Q ss_pred cCeEEEEEeeCCCEEEEEeCC--CeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 043172 307 CPVRKASFLPDGSQAIIAGRR--KFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKE 384 (564)
Q Consensus 307 ~~I~~l~fspdg~~l~s~~~d--g~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~ 384 (564)
.....+.|++ +....+++.. ..|+++|+.+++......+..+.- -..+++. .+++..+.-.++.+.+||..+.+
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~f--geGi~~~-~~~ly~ltw~~~~v~v~D~~tl~ 96 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYF--GAGIVAW-RDRLIQLTWRNHEGFVYDLATLT 96 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCC--EEEEEEE-TTEEEEEESSSSEEEEEETTTTE
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcc--eeEEEEe-CCEEEEEEeeCCEEEEEECCcCc
Confidence 3466888985 4445555554 489999999999876555543321 1334443 23344445568999999999999
Q ss_pred EEEEeeecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeec-CC---cceEEEEECCCCCEEEEEeCCCcEE
Q 043172 385 LIGTLKMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDE-GC---INGTALCTSPDGTFFAAGSDSGIVN 460 (564)
Q Consensus 385 ~~~~~~~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~-~~---~~i~~l~~sp~g~~lasgs~dg~V~ 460 (564)
.+.++...+.-..++ +++..|+++..++.|+++|..+.+.+.++... +. ..++.+.+. +|+.+|..-.+..|.
T Consensus 97 ~~~ti~~~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~ 173 (243)
T 3mbr_X 97 PRARFRYPGEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIA 173 (243)
T ss_dssp EEEEEECSSCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEE
T ss_pred EEEEEeCCCCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEE
Confidence 999998554334444 56777777777899999999999988877642 11 123455554 666665555678999
Q ss_pred EEeCCcccCCcceeeEEccc-------------cccceeEEEEcCCCcEEEEEec
Q 043172 461 VYNRQEFLGGKRKPIKTIEN-------------LTTKVDFMKFNNDAQILAICST 502 (564)
Q Consensus 461 iwd~~~~~~~~~~~~~~~~~-------------~~~~I~~l~fspdg~~La~~s~ 502 (564)
+.|..++ +.+..+.- ...-.+.|+|+|+++.|++.+.
T Consensus 174 vIDp~tG-----~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 174 RIDPASG-----KVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EECTTTC-----BEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EEECCCC-----CEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 9999987 55555431 1235688999998877777664
No 264
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.70 E-value=3.3e-06 Score=94.54 Aligned_cols=200 Identities=8% Similarity=0.068 Sum_probs=117.3
Q ss_pred CCCC-CeeEEEEc-CCCCEEEEEeC-CC----cEEEEEecCC-CCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCC----
Q 043172 260 SSTG-PINSVQFH-RNAQLLLVAGL-DR----RLRFFQIDGK-RNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRR---- 327 (564)
Q Consensus 260 ~h~~-~V~~l~fs-pdg~~l~s~s~-dg----~I~lwd~~~~-~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~d---- 327 (564)
+|.- .+...+|| |||++||.+.. +| +|+++++.++ .. ....+.. ....++|+|||+.|+....+
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~-l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~ 245 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT-IADKVSG---TNGEIVWGPDHTSLFYVTKDETLR 245 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC-CCCCEEE---ECSCCEECSSTTEEEEEEECTTCC
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe-CCccccC---ceeeEEEecCCCEEEEEEECCCCC
Confidence 4543 68899999 99998876543 22 4999998865 31 1111111 13468899999998887654
Q ss_pred -CeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeC---CCeEEEEECCCC--cE-EEEee--ecCcEEEE
Q 043172 328 -KFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGN---EGYILLVSSKTK--EL-IGTLK--MNGTVRSL 398 (564)
Q Consensus 328 -g~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~---dg~I~lwd~~t~--~~-~~~~~--~~~~V~~l 398 (564)
..|+++++.++.......+..........+.|||||++|++.+. ...|+++|+.++ +. +..+. ..+...++
T Consensus 246 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~ 325 (751)
T 2xe4_A 246 ENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDV 325 (751)
T ss_dssp EEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEE
T ss_pred CCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEE
Confidence 36888999876532111111111223567899999999887763 357899999875 23 12232 33455566
Q ss_pred EEecCCCEEEEEeCC----CeEEEEECCCC-ceeE-EEeecCCcceEEEEECCCCCEEEEEeCCCc--EEEEeC
Q 043172 399 AFADDGKQLLSSGGD----GQVYHWDLRTR-TCIH-RAVDEGCINGTALCTSPDGTFFAAGSDSGI--VNVYNR 464 (564)
Q Consensus 399 ~~spdg~~l~s~s~d----g~V~lwD~~~~-~~~~-~~~~~~~~~i~~l~~sp~g~~lasgs~dg~--V~iwd~ 464 (564)
.|+..+.+++.+..+ ..|+.+++.++ .... .+.......+..+.+. .+.++++...+|. |.++++
T Consensus 326 ~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 326 QMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred eeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence 655444444444433 37888888653 2222 2222223344555554 3345556666775 445554
No 265
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.68 E-value=3.4e-06 Score=94.44 Aligned_cols=153 Identities=9% Similarity=-0.029 Sum_probs=95.9
Q ss_pred CeEEEEEe-eCCCEEEEEeC-CC----eEEEEECCCC-ceeeeccccccCCcceEEEEEcCCCCEEEEEeCC-----CeE
Q 043172 308 PVRKASFL-PDGSQAIIAGR-RK----FFYSLDLVKA-KADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNE-----GYI 375 (564)
Q Consensus 308 ~I~~l~fs-pdg~~l~s~~~-dg----~i~iwdl~~~-~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-----g~I 375 (564)
.+...+|| |||++|+.+.. .| .|+++|+.++ +... ..+.. ....++|+|||+.|+....+ ..|
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~-~~~~~----~~~~~~WspDg~~l~y~~~d~~~~~~~v 249 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA-DKVSG----TNGEIVWGPDHTSLFYVTKDETLRENKV 249 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC-CCEEE----ECSCCEECSSTTEEEEEEECTTCCEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC-ccccC----ceeeEEEecCCCEEEEEEECCCCCCCEE
Confidence 56788999 99999887642 22 5999999998 6311 11111 23468899999988887664 368
Q ss_pred EEEECCCCcE--EEEee--ecCcEEEEEEecCCCEEEEEeC---CCeEEEEECCCCc-ee--EEEeecCCcceEEEEECC
Q 043172 376 LLVSSKTKEL--IGTLK--MNGTVRSLAFADDGKQLLSSGG---DGQVYHWDLRTRT-CI--HRAVDEGCINGTALCTSP 445 (564)
Q Consensus 376 ~lwd~~t~~~--~~~~~--~~~~V~~l~~spdg~~l~s~s~---dg~V~lwD~~~~~-~~--~~~~~~~~~~i~~l~~sp 445 (564)
+++++.+++. ...+. .......+.|+|||++|+..+. ...|+++|+.++. .. ..+.........++.|+.
T Consensus 250 ~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~ 329 (751)
T 2xe4_A 250 WRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG 329 (751)
T ss_dssp EEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET
T ss_pred EEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee
Confidence 8899987642 22222 3345678899999998887653 4579999998752 12 333332222334454443
Q ss_pred CCCEEEEEeC-C--C--cEEEEeCCc
Q 043172 446 DGTFFAAGSD-S--G--IVNVYNRQE 466 (564)
Q Consensus 446 ~g~~lasgs~-d--g--~V~iwd~~~ 466 (564)
|..|+..+. + + .|.++++..
T Consensus 330 -g~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 330 -TSHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp -TTEEEEEECTTTCTTCEEEEEETTS
T ss_pred -CCEEEEEeCCCCCCCcEEEEEcCCC
Confidence 555544433 3 2 566666553
No 266
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.65 E-value=1.2e-05 Score=86.78 Aligned_cols=258 Identities=10% Similarity=0.036 Sum_probs=156.5
Q ss_pred CCEEEEEeCCCcEEEEEecCCCCceeEEEEeCC----cCeEE-EEEeeCCCEEEEEeC------CCeEEEEECCCCceee
Q 043172 274 AQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLED----CPVRK-ASFLPDGSQAIIAGR------RKFFYSLDLVKAKADK 342 (564)
Q Consensus 274 g~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~----~~I~~-l~fspdg~~l~s~~~------dg~i~iwdl~~~~~~~ 342 (564)
+..|++++.++.|..+|..++ ..+-...... ..+.+ ... .+..+++++. ++.|+.+|..+|+..-
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG--~~~W~~~~~~~~~~~~~~~~P~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W 190 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTG--KINWEVEVCDPKVGSTLTQAPFV--AKDTVLMGCSGAELGVRGAVNAFDLKTGELKW 190 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTC--CEEEEEECCCGGGTCBCCSCCEE--ETTEEEEECBCGGGTCCCEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCEEEEEECCCC--CEEEEecCCCCCccceeccCCEE--ECCEEEEEecCCccCCCCEEEEEECCCCcEEE
Confidence 557788888998888887643 3444433221 01211 111 2346666654 7899999999998643
Q ss_pred eccccccC----------------------------------Cc-ceEEEEEcCCCCEEEEEeCC---------------
Q 043172 343 IGPLVGRE----------------------------------EK-SLEFFEVSPDSSVIAFVGNE--------------- 372 (564)
Q Consensus 343 ~~~~~~~~----------------------------------~~-~v~~~~~spdg~~la~~~~d--------------- 372 (564)
........ .. ....+++.+....++++..+
T Consensus 191 ~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y 270 (571)
T 2ad6_A 191 RAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKW 270 (571)
T ss_dssp EEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTT
T ss_pred EEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCcee
Confidence 22211100 00 00235667766677766532
Q ss_pred -CeEEEEECCCCcEEEEeeec----------CcEEEEEEecCCC---EEEEEeCCCeEEEEECCCCceeEEEeecCC---
Q 043172 373 -GYILLVSSKTKELIGTLKMN----------GTVRSLAFADDGK---QLLSSGGDGQVYHWDLRTRTCIHRAVDEGC--- 435 (564)
Q Consensus 373 -g~I~lwd~~t~~~~~~~~~~----------~~V~~l~~spdg~---~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~--- 435 (564)
+.|..+|..+++.+..+... ....-+...++|+ .++.++.+|.++++|..+++.+..+.....
T Consensus 271 ~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w 350 (571)
T 2ad6_A 271 TMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNV 350 (571)
T ss_dssp TTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCS
T ss_pred EEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccc
Confidence 36999999999998887621 1111122334674 577888899999999999998776543220
Q ss_pred ---------cce--------------------------EEEEECCCCCEEEEEe--------------------------
Q 043172 436 ---------ING--------------------------TALCTSPDGTFFAAGS-------------------------- 454 (564)
Q Consensus 436 ---------~~i--------------------------~~l~~sp~g~~lasgs-------------------------- 454 (564)
.++ ..++++|+..+|++.+
T Consensus 351 ~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~ 430 (571)
T 2ad6_A 351 FKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLA 430 (571)
T ss_dssp EEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred cccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccce
Confidence 000 2357788777776654
Q ss_pred -----------CCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCC
Q 043172 455 -----------DSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWP 523 (564)
Q Consensus 455 -----------~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~ 523 (564)
.+|.|..||..++ +.+.++.. ...+....+...+..+++++. ++.|+.||..+++.+-.+.
T Consensus 431 ~~~~~~~~~~~~~g~l~a~D~~tG-----~~~W~~~~-~~~~~~~~~~t~gg~v~~g~~--dg~l~a~D~~tG~~lw~~~ 502 (571)
T 2ad6_A 431 MYPGPNGPTKKEMGQIRAFDLTTG-----KAKWTKWE-KFAAWGGTLYTKGGLVWYATL--DGYLKALDNKDGKELWNFK 502 (571)
T ss_dssp EEECTTSTTSCCCEEEEEECTTTC-----CEEEEEEE-SSCCCSBCEEETTTEEEEECT--TSEEEEEETTTCCEEEEEE
T ss_pred eccCccccCCCCCCeEEEEECCCC-----CEEEEecC-CCCccceeEEECCCEEEEEcC--CCeEEEEECCCCCEEEEEe
Confidence 2478888888876 55555542 222333333345667777777 8999999999999887665
Q ss_pred CCCCCCCCcEEEEEeCCCCEEE
Q 043172 524 PANRNLQYPRCLDFSPGGGFMA 545 (564)
Q Consensus 524 ~~~~~~~~V~~l~fspdg~~La 545 (564)
......+ ..+.+..+|+.++
T Consensus 503 ~~~~~~~--~p~~~~~~G~~yv 522 (571)
T 2ad6_A 503 MPSGGIG--SPMTYSFKGKQYI 522 (571)
T ss_dssp CSSCCCS--CCEEEEETTEEEE
T ss_pred CCCCcEe--eeEEEEECCEEEE
Confidence 5432222 2234667777544
No 267
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.64 E-value=4e-05 Score=86.11 Aligned_cols=281 Identities=11% Similarity=0.043 Sum_probs=171.6
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEE-------EeCCcCeEEEEEeeCCCEEEEEeCCCeEEEE
Q 043172 261 STGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSI-------FLEDCPVRKASFLPDGSQAIIAGRRKFFYSL 333 (564)
Q Consensus 261 h~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~-------~~~~~~I~~l~fspdg~~l~s~~~dg~i~iw 333 (564)
+...|.++...++|. |..|+.++-|..|+............ ......|.+++..++|. |.+|+.++-|.+|
T Consensus 311 ~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~ 388 (781)
T 3v9f_A 311 SNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVF 388 (781)
T ss_dssp SSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEE
T ss_pred CCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEE
Confidence 456799999999886 45566667788887654322111100 01235688888877775 4455655568889
Q ss_pred ECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee---ecCcEEEEEEecCCCEEEEE
Q 043172 334 DLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLK---MNGTVRSLAFADDGKQLLSS 410 (564)
Q Consensus 334 dl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~---~~~~V~~l~~spdg~~l~s~ 410 (564)
+..++...............|.++...++|.+.+ |+..+-|..++..+++...... ....|.++...++|. |.+|
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lwig 466 (781)
T 3v9f_A 389 ENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKK-IWIG 466 (781)
T ss_dssp ETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSE-EEEE
T ss_pred ECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCC-EEEE
Confidence 9876654332111111224688888888877554 6666779999988776543221 245789998888776 5555
Q ss_pred eCCCeEEEEECCCCceeEEEeec----CCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEcc---c-cc
Q 043172 411 GGDGQVYHWDLRTRTCIHRAVDE----GCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIE---N-LT 482 (564)
Q Consensus 411 s~dg~V~lwD~~~~~~~~~~~~~----~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~---~-~~ 482 (564)
+. +.|.+||..+++........ ....+.+++..++|++. +|+..+-|..|+.... .+..+. + ..
T Consensus 467 t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lW-igt~~~Gl~~~~~~~~------~~~~~~~~~~l~~ 538 (781)
T 3v9f_A 467 TH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFW-IGTFGGGVGIYTPDMQ------LVRKFNQYEGFCS 538 (781)
T ss_dssp ET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEE-EEESSSCEEEECTTCC------EEEEECTTTTCSC
T ss_pred EC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEE-EEEcCCCEEEEeCCCC------eEEEccCCCCCCC
Confidence 55 56999999876654332211 12467889898888754 4555444777887653 222222 1 23
Q ss_pred cceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCC-CCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q 043172 483 TKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPAN-RNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLN 559 (564)
Q Consensus 483 ~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~-~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~ 559 (564)
..|.++...++|.+.+ ++. .|.|..|+..+.+. ..+.... -+...|.++...++|.+.++ +..| |..|+..
T Consensus 539 ~~i~~i~~d~~g~lWi-~T~--~Glv~~~d~~~~~~-~~~~~~~gl~~~~i~~i~~d~~g~lW~~-t~~G-l~~~~~~ 610 (781)
T 3v9f_A 539 NTINQIYRSSKGQMWL-ATG--EGLVCFPSARNFDY-QVFQRKEGLPNTHIRAISEDKNGNIWAS-TNTG-ISCYITS 610 (781)
T ss_dssp SCEEEEEECTTSCEEE-EET--TEEEEESCTTTCCC-EEECGGGTCSCCCCCEEEECSSSCEEEE-CSSC-EEEEETT
T ss_pred CeeEEEEECCCCCEEE-EEC--CCceEEECCCCCcE-EEccccCCCCCceEEEEEECCCCCEEEE-cCCc-eEEEECC
Confidence 5688899888887655 443 45548888766543 2222111 12345788999988875554 4556 5556544
No 268
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.62 E-value=8.9e-07 Score=97.64 Aligned_cols=247 Identities=13% Similarity=0.060 Sum_probs=143.1
Q ss_pred EEEEEee-CCCEEEEEeCCC-----------eEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeC-CCeEE
Q 043172 310 RKASFLP-DGSQAIIAGRRK-----------FFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGN-EGYIL 376 (564)
Q Consensus 310 ~~l~fsp-dg~~l~s~~~dg-----------~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~-dg~I~ 376 (564)
.++++.+ +++.++.|+.+. .+.+||+.+++...+..+.........++++.++++++++||. +..+.
T Consensus 189 ~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 189 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS 268 (656)
T ss_dssp SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred eeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceE
Confidence 3667777 788888877432 6889999998865544443322223345778899999999984 46899
Q ss_pred EEECCCCcEEEEeee--cCcEEEEEEecCCCEEEEEe-CC-----CeEEEEECCCCceeEEE----eecCCcceEEEEEC
Q 043172 377 LVSSKTKELIGTLKM--NGTVRSLAFADDGKQLLSSG-GD-----GQVYHWDLRTRTCIHRA----VDEGCINGTALCTS 444 (564)
Q Consensus 377 lwd~~t~~~~~~~~~--~~~V~~l~~spdg~~l~s~s-~d-----g~V~lwD~~~~~~~~~~----~~~~~~~i~~l~~s 444 (564)
+||..+.++...-.. ...-.++++.+++++++.|+ .+ ..+.+||..+.+....- ....... ...++.
T Consensus 269 ~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~-~~~~~~ 347 (656)
T 1k3i_A 269 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTAD-KQGLYR 347 (656)
T ss_dssp EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCC-TTGGGT
T ss_pred EecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccc-ccceee
Confidence 999999887654332 11223556667899999988 34 46999999877643320 0000000 001223
Q ss_pred CCCCEEEEEeCCC---------cEEEEeCCcccCCcceeeEEccc------cccceeEEEEc-CCCcEEEEEecCC-C--
Q 043172 445 PDGTFFAAGSDSG---------IVNVYNRQEFLGGKRKPIKTIEN------LTTKVDFMKFN-NDAQILAICSTMK-K-- 505 (564)
Q Consensus 445 p~g~~lasgs~dg---------~V~iwd~~~~~~~~~~~~~~~~~------~~~~I~~l~fs-pdg~~La~~s~~~-d-- 505 (564)
.++..++.|+.+| .+..||.... ....+...... ....-.++.|. .+++++++|+... +
T Consensus 348 ~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~--~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~ 425 (656)
T 1k3i_A 348 SDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGS--GDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDS 425 (656)
T ss_dssp TTCSCCEEECGGGCEEECCSSSEEEEEECSTT--CEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSS
T ss_pred cCCceEEEECCCCcEEEecCccceeeeecCCc--ceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCC
Confidence 4555556665444 4677887664 11111111111 01122344454 3778888877421 1
Q ss_pred ---C---eEEEEEcCCCceeccCCCCCCCCCC-cEEEEEeCCCCEEEEEcCC-----------CeEEEEEcCC
Q 043172 506 ---N---SLKLIHIPSYNVFSNWPPANRNLQY-PRCLDFSPGGGFMAVGNAA-----------GKVFLYKLNH 560 (564)
Q Consensus 506 ---~---~I~lwdl~s~~~~~~~~~~~~~~~~-V~~l~fspdg~~Lasgs~d-----------G~V~lw~l~~ 560 (564)
. .|.+||..+..-.... ....+..+ -.+++..|+|+++++|+.+ ..+.+||..+
T Consensus 426 ~~~~~~~~v~~yd~~~~~W~~~~-~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t 497 (656)
T 1k3i_A 426 DATTNAHIITLGEPGTSPNTVFA-SNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQ 497 (656)
T ss_dssp BCCCCEEEEECCSTTSCCEEEEC-TTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGG
T ss_pred CcCCcceEEEcCCCCCCCeeEEc-cCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCC
Confidence 1 6778887665433221 01111122 2355677899999999854 4578888643
No 269
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.61 E-value=5.9e-05 Score=81.60 Aligned_cols=234 Identities=12% Similarity=0.061 Sum_probs=143.0
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeeeccccccC------CcceEEEEEc-CCCC-EEEEEe------CCCeEEEEECCCC
Q 043172 318 GSQAIIAGRRKFFYSLDLVKAKADKIGPLVGRE------EKSLEFFEVS-PDSS-VIAFVG------NEGYILLVSSKTK 383 (564)
Q Consensus 318 g~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~------~~~v~~~~~s-pdg~-~la~~~------~dg~I~lwd~~t~ 383 (564)
+..|++++.++.|+.+|..+|+..-...+..+. ..++ +.=. .+|+ .+++++ .+|.|..+|..++
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~--v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG 194 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPT--IVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTG 194 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCE--EEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTC
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCE--EeCCCcCCcEEEEEeccccccCCCCEEEEEECCCC
Confidence 567888889999999999999875333222211 1111 1111 1233 555554 2789999999999
Q ss_pred cEEEEeeecC-cE-----------------------------------------EEEEEecCCCEEEEEeC---------
Q 043172 384 ELIGTLKMNG-TV-----------------------------------------RSLAFADDGKQLLSSGG--------- 412 (564)
Q Consensus 384 ~~~~~~~~~~-~V-----------------------------------------~~l~~spdg~~l~s~s~--------- 412 (564)
+.+....... .+ ..+++.|....+++++.
T Consensus 195 ~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~ 274 (582)
T 1flg_A 195 EEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWA 274 (582)
T ss_dssp CEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGG
T ss_pred CEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcc
Confidence 9887654211 00 12456666677776663
Q ss_pred -----------C----CeEEEEECCCCceeEEEeecCC--------cceEEEEEC-CCCC---EEEEEeCCCcEEEEeCC
Q 043172 413 -----------D----GQVYHWDLRTRTCIHRAVDEGC--------INGTALCTS-PDGT---FFAAGSDSGIVNVYNRQ 465 (564)
Q Consensus 413 -----------d----g~V~lwD~~~~~~~~~~~~~~~--------~~i~~l~~s-p~g~---~lasgs~dg~V~iwd~~ 465 (564)
| +.|..+|..+++.+-.+...+. ....-+... .+|+ .++.++.+|.++++|..
T Consensus 275 r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~ 354 (582)
T 1flg_A 275 RTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRS 354 (582)
T ss_dssp GSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETT
T ss_pred cccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECC
Confidence 2 6899999999999877654211 111112221 4664 78889999999999998
Q ss_pred cccCCcceeeEEccccc-------------cc--------------------------------eeEEEEcCCCcEEEEE
Q 043172 466 EFLGGKRKPIKTIENLT-------------TK--------------------------------VDFMKFNNDAQILAIC 500 (564)
Q Consensus 466 ~~~~~~~~~~~~~~~~~-------------~~--------------------------------I~~l~fspdg~~La~~ 500 (564)
++ +++..+.... .+ -..++++|+..++++.
T Consensus 355 tG-----~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~ 429 (582)
T 1flg_A 355 NG-----KLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVP 429 (582)
T ss_dssp TC-----CEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEE
T ss_pred CC-----CEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEe
Confidence 86 4433222110 00 0135677776666554
Q ss_pred ec-------------------------------CCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcC
Q 043172 501 ST-------------------------------MKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNA 549 (564)
Q Consensus 501 s~-------------------------------~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~ 549 (564)
.. ...+.|..||+.+++..-..+... ++..-.....+.++++|+.
T Consensus 430 ~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~----~~~~g~~~tagglvf~g~~ 505 (582)
T 1flg_A 430 ANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL----PLWAGVLATAGNLVFTGTG 505 (582)
T ss_dssp EECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS----CCCSCCEEETTTEEEEECT
T ss_pred chhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC----CCcccceEeCCCEEEEECC
Confidence 32 125789999999988764433221 1111122234677888999
Q ss_pred CCeEEEEEcCCCC
Q 043172 550 AGKVFLYKLNHYH 562 (564)
Q Consensus 550 dG~V~lw~l~~~~ 562 (564)
||.++.||..+.+
T Consensus 506 dg~l~A~D~~tG~ 518 (582)
T 1flg_A 506 DGYFKAFDAKSGK 518 (582)
T ss_dssp TSEEEEEETTTCC
T ss_pred CCcEEEEECCCCC
Confidence 9999999988765
No 270
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.59 E-value=3.6e-05 Score=73.68 Aligned_cols=206 Identities=13% Similarity=0.213 Sum_probs=135.9
Q ss_pred cccccCCcceEEEEEcCCCCEEE-EEeCCCeEEEEECCCCcEEEEeeec--CcEEEEEEecCCCEEEEEeCCCeEEEEEC
Q 043172 345 PLVGREEKSLEFFEVSPDSSVIA-FVGNEGYILLVSSKTKELIGTLKMN--GTVRSLAFADDGKQLLSSGGDGQVYHWDL 421 (564)
Q Consensus 345 ~~~~~~~~~v~~~~~spdg~~la-~~~~dg~I~lwd~~t~~~~~~~~~~--~~V~~l~~spdg~~l~s~s~dg~V~lwD~ 421 (564)
.+.+-.. .+..++|+|+++.|+ +...++.|..+|+. ++.+..+... ...-.|++.+++.++++.-.++.+.++++
T Consensus 21 ~l~g~~~-~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 21 EIAGITN-NISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp ECTTCCS-CEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred ECCCccc-CcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 3445444 589999999876555 46678999999997 8888887633 57889999988877666656789999998
Q ss_pred CCCce---eEEEee-----cCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEc-------ccccccee
Q 043172 422 RTRTC---IHRAVD-----EGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTI-------ENLTTKVD 486 (564)
Q Consensus 422 ~~~~~---~~~~~~-----~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~-------~~~~~~I~ 486 (564)
..... +..... ........++|+|.++.|+++.......||.+...... ..+..+ ......+.
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~--~~l~i~~~~~~~~~~~~~d~S 176 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSS--NELHISKDKALQRQFTLDDVS 176 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCS--SCCEEEECHHHHHTCCSSCCC
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccC--CceeeecchhhccccccCCce
Confidence 76442 222221 23344689999999987777776655566665421101 111111 11234678
Q ss_pred EEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCC------CCCcEEEEEeCCCCEEEEEcCCCeEEEEE
Q 043172 487 FMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRN------LQYPRCLDFSPGGGFMAVGNAAGKVFLYK 557 (564)
Q Consensus 487 ~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~------~~~V~~l~fspdg~~Lasgs~dG~V~lw~ 557 (564)
.++|+|....|++.|.. ...|..+|.. +.+...++...+. ....-.|+|.++|++. +.++...++.|.
T Consensus 177 ~l~~dp~tg~lliLS~~-s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~ly-IvsE~n~~y~f~ 250 (255)
T 3qqz_A 177 GAEFNQQKNTLLVLSHE-SRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIY-IVSEPNRFYRFT 250 (255)
T ss_dssp EEEEETTTTEEEEEETT-TTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEE-EEETTTEEEEEE
T ss_pred eEEEcCCCCeEEEEECC-CCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEE-EEcCCceEEEEE
Confidence 99999987777766654 6788888865 4455444333221 2356899999999844 447777666654
No 271
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.59 E-value=2.5e-05 Score=81.92 Aligned_cols=249 Identities=8% Similarity=0.011 Sum_probs=146.2
Q ss_pred eEEEEEee-CCCEEEEEeC-CCeEEEEECCCCceeeeccccccCCcceEEEEE-------cCCCCEEEEEeCCC------
Q 043172 309 VRKASFLP-DGSQAIIAGR-RKFFYSLDLVKAKADKIGPLVGREEKSLEFFEV-------SPDSSVIAFVGNEG------ 373 (564)
Q Consensus 309 I~~l~fsp-dg~~l~s~~~-dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~-------spdg~~la~~~~dg------ 373 (564)
...|+|+| +...|+++.. .+.|++.|+.++.+..+.............++| +++|.+|+++...+
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~ 220 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES 220 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence 46889998 4556666553 467999999998876554332212235889999 99999777776543
Q ss_pred -eEEEEECCC-CcEE-----EEeeecCcEEEEEEecC-CCEEEEEeCCCeEEEEECC-------CCce-----------e
Q 043172 374 -YILLVSSKT-KELI-----GTLKMNGTVRSLAFADD-GKQLLSSGGDGQVYHWDLR-------TRTC-----------I 427 (564)
Q Consensus 374 -~I~lwd~~t-~~~~-----~~~~~~~~V~~l~~spd-g~~l~s~s~dg~V~lwD~~-------~~~~-----------~ 427 (564)
.|.+++... +.+. ..+..-.....++++|+ +.++++-..++.|+.+|+. ++.. .
T Consensus 221 ~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~ 300 (496)
T 3kya_A 221 PSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTF 300 (496)
T ss_dssp EEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTE
T ss_pred ceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccccc
Confidence 366776433 2221 22221224567888995 5555556678899999997 5543 1
Q ss_pred EE-EeecCCcceEEEEECCCCCEE-EEEeCCCcEEEEeCCcccCC--cceeeEEc---cc---------ccccee-EEEE
Q 043172 428 HR-AVDEGCINGTALCTSPDGTFF-AAGSDSGIVNVYNRQEFLGG--KRKPIKTI---EN---------LTTKVD-FMKF 490 (564)
Q Consensus 428 ~~-~~~~~~~~i~~l~~sp~g~~l-asgs~dg~V~iwd~~~~~~~--~~~~~~~~---~~---------~~~~I~-~l~f 490 (564)
.. +..........|+|+|+|++| ++-+....|+.++....... .+..+.-. .+ .-.... .++.
T Consensus 301 ~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~v 380 (496)
T 3kya_A 301 KQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFV 380 (496)
T ss_dssp EEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEE
T ss_pred ceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEE
Confidence 12 222222345789999999954 44456778888665431000 00111111 00 001233 4444
Q ss_pred c-------CCCcEEEEEecCCCCeEEEEEcCCCceeccC--------------------CCCCCCCCCcEEEEEeCC-CC
Q 043172 491 N-------NDAQILAICSTMKKNSLKLIHIPSYNVFSNW--------------------PPANRNLQYPRCLDFSPG-GG 542 (564)
Q Consensus 491 s-------pdg~~La~~s~~~d~~I~lwdl~s~~~~~~~--------------------~~~~~~~~~V~~l~fspd-g~ 542 (564)
. ++|.++++-+. +..|+.++ +++.+.... +...........|+++++ |.
T Consensus 381 d~~~~~~~~~g~lyVaD~~--N~rIr~i~-~~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~ 457 (496)
T 3kya_A 381 KNPDYTGEEEYDFYFVDRL--NFCVRKVT-PEGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEM 457 (496)
T ss_dssp ECTTCCSSCCEEEEEEEGG--GTEEEEEC-TTCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTE
T ss_pred ccccccccCCCeEEEEECC--CCEEEEEe-CCCCEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCE
Confidence 4 45555554444 78999998 455332111 001113456889999997 76
Q ss_pred EEEEEcCCCeEEEEEcCC
Q 043172 543 FMAVGNAAGKVFLYKLNH 560 (564)
Q Consensus 543 ~Lasgs~dG~V~lw~l~~ 560 (564)
++++=....+|+.+++..
T Consensus 458 lyVaD~~N~rIrki~~~~ 475 (496)
T 3kya_A 458 FYVHDQVGHTIRTISMEQ 475 (496)
T ss_dssp EEEEETTTTEEEEEEECC
T ss_pred EEEEeCCCCEEEEEECCC
Confidence 666666778999998864
No 272
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.58 E-value=0.00011 Score=74.13 Aligned_cols=239 Identities=9% Similarity=-0.037 Sum_probs=144.8
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEe-CCCeEEEEECCCCcee
Q 043172 263 GPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAG-RRKFFYSLDLVKAKAD 341 (564)
Q Consensus 263 ~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~-~dg~i~iwdl~~~~~~ 341 (564)
...+|.+..+. .+|+.+. ...|+..++++.. ...+......+..++|++....|+.+. ..+.|+.+++.++...
T Consensus 34 d~~~C~~~~~~-~~ll~~~-~~~I~~i~~~g~~---~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~ 108 (349)
T 3v64_C 34 DRRSCKALGPE-PVLLFAN-RIDIRQVLPHRSE---YTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE 108 (349)
T ss_dssp TSSCEEESSSC-CEEEEEC-BSCEEEECTTSCC---EEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CCCcccccccC-ceeEeec-ccceEEEeCCCCe---eEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCce
Confidence 44567777774 4454443 3457777766432 222323334578999998777777665 5688999999876543
Q ss_pred eeccccccCCcceEEEEEcCCCCEEEEE-eCCCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEe-CC-CeEE
Q 043172 342 KIGPLVGREEKSLEFFEVSPDSSVIAFV-GNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSG-GD-GQVY 417 (564)
Q Consensus 342 ~~~~~~~~~~~~v~~~~~spdg~~la~~-~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s-~d-g~V~ 417 (564)
.+.. .+ ......+++.+.+..|+.+ ...+.|.++++........+. .-....++++.|.+..|+.+. .. +.|+
T Consensus 109 ~~~~-~~--~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~ 185 (349)
T 3v64_C 109 EVVS-TG--LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIE 185 (349)
T ss_dssp EEEC-SS--CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred EEEe-CC--CCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEE
Confidence 3211 11 1235678999865555544 456899999987654333332 235678999999666555554 34 7899
Q ss_pred EEECCCCceeEEEeecCCcceEEEEECCCCCEEEE-EeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcE
Q 043172 418 HWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAA-GSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQI 496 (564)
Q Consensus 418 lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~las-gs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~ 496 (564)
.+++... ....+..........|+++|++..|+. -+..+.|..+++... .....+.........|++. .+ .
T Consensus 186 r~~~dG~-~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~-----~~~~~~~~~~~~P~giav~-~~-~ 257 (349)
T 3v64_C 186 ASSMDGS-GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS-----HRKAVISQGLPHPFAITVF-ED-S 257 (349)
T ss_dssp EEETTSC-SCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-----SCEEEECSSCSSEEEEEEE-TT-E
T ss_pred EEeCCCC-CcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCC-----ceEEEEeCCCCCceEEEEE-CC-E
Confidence 9998743 333333233334688999986665554 456778999998753 1111222223455677773 33 4
Q ss_pred EEEEecCCCCeEEEEEcCCCce
Q 043172 497 LAICSTMKKNSLKLIHIPSYNV 518 (564)
Q Consensus 497 La~~s~~~d~~I~lwdl~s~~~ 518 (564)
|+.+... .+.|..++..+++.
T Consensus 258 ly~td~~-~~~V~~~~~~~G~~ 278 (349)
T 3v64_C 258 LYWTDWH-TKSINSANKFTGKN 278 (349)
T ss_dssp EEEEETT-TTEEEEEETTTCCS
T ss_pred EEEecCC-CCeEEEEEccCCCc
Confidence 5544432 67888888555543
No 273
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.57 E-value=0.00012 Score=72.63 Aligned_cols=227 Identities=10% Similarity=0.001 Sum_probs=138.3
Q ss_pred EEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEe-CCCeEEEEECCC----CcEEEEee-ecC
Q 043172 320 QAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVG-NEGYILLVSSKT----KELIGTLK-MNG 393 (564)
Q Consensus 320 ~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~-~dg~I~lwd~~t----~~~~~~~~-~~~ 393 (564)
+|+.+. ...|+..++.+.....+. ... ..+..++|++.++.|+.+. ..+.|..+++.+ ......+. .-.
T Consensus 3 ~ll~~~-~~~I~~i~~~~~~~~~~~--~~~--~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~ 77 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDRSEYTSLI--PNL--RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ 77 (316)
T ss_dssp EEEEEC-BSSEEEEETTSCCCEEEE--CSC--SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCS
T ss_pred EEEEEC-CCeEEEEECCCcceEehh--cCC--CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCC
Confidence 344444 356889999887654432 221 2478899998766666554 468999999876 22222222 224
Q ss_pred cEEEEEEecCCCEEE-EEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEe-CC-CcEEEEeCCcccCC
Q 043172 394 TVRSLAFADDGKQLL-SSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGS-DS-GIVNVYNRQEFLGG 470 (564)
Q Consensus 394 ~V~~l~~spdg~~l~-s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs-~d-g~V~iwd~~~~~~~ 470 (564)
.+.++++.+.+..|+ +-...+.|.++++..... ..+..........++++|.+.+|+... .. +.|..+++...
T Consensus 78 ~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~-~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~--- 153 (316)
T 1ijq_A 78 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV--- 153 (316)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE-EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---
T ss_pred CcCEEEEeecCCeEEEEECCCCEEEEEeCCCCce-EEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC---
Confidence 568899987555555 445678999999875443 333332333568899998766555443 33 78888887642
Q ss_pred cceeeEEc-cccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcC
Q 043172 471 KRKPIKTI-ENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNA 549 (564)
Q Consensus 471 ~~~~~~~~-~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~ 549 (564)
....+ ...-.....|+++|++..|+.+... .+.|..+++..... ..+............+++. .+.++++-..
T Consensus 154 ---~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~-~~~I~~~d~dg~~~-~~~~~~~~~~~~P~giav~-~~~ly~~d~~ 227 (316)
T 1ijq_A 154 ---DIYSLVTENIQWPNGITLDLLSGRLYWVDSK-LHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF-EDKVFWTDII 227 (316)
T ss_dssp ---CEEEEECSSCSCEEEEEEETTTTEEEEEETT-TTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEE-TTEEEEEETT
T ss_pred ---CeEEEEECCCCCceEEEEeccCCEEEEEECC-CCeEEEEecCCCce-EEEeecCCccCCcEEEEEE-CCEEEEEECC
Confidence 22222 2234567899999988888777653 67999999864222 2111111123456788885 3455555556
Q ss_pred CCeEEEEEcCCC
Q 043172 550 AGKVFLYKLNHY 561 (564)
Q Consensus 550 dG~V~lw~l~~~ 561 (564)
.+.|..++..+.
T Consensus 228 ~~~V~~~~~~~g 239 (316)
T 1ijq_A 228 NEAIFSANRLTG 239 (316)
T ss_dssp TTEEEEEETTTC
T ss_pred CCeEEEEeCCCC
Confidence 778888876544
No 274
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.55 E-value=5.3e-05 Score=81.94 Aligned_cols=261 Identities=11% Similarity=0.102 Sum_probs=154.3
Q ss_pred CCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCc----CeE-EEEEeeC---CC-EEEEEe------CCCeEEEEECCCC
Q 043172 274 AQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDC----PVR-KASFLPD---GS-QAIIAG------RRKFFYSLDLVKA 338 (564)
Q Consensus 274 g~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~----~I~-~l~fspd---g~-~l~s~~------~dg~i~iwdl~~~ 338 (564)
+..|++++.++.|.-+|..++ ..+-....... .+. ......+ |+ .|++++ .++.|+.+|..+|
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG--~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG 194 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTG--KVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTG 194 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSC--CEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTC
T ss_pred CCEEEEEeCCCEEEEEECCCC--CEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCC
Confidence 457777888998888887643 34444332220 111 1111222 33 555554 3789999999999
Q ss_pred ceeeecccccc--------------------------------------CCcceEEEEEcCCCCEEEEEeC---------
Q 043172 339 KADKIGPLVGR--------------------------------------EEKSLEFFEVSPDSSVIAFVGN--------- 371 (564)
Q Consensus 339 ~~~~~~~~~~~--------------------------------------~~~~v~~~~~spdg~~la~~~~--------- 371 (564)
+..-....... ....-..+++.|...+++++..
T Consensus 195 ~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~ 274 (582)
T 1flg_A 195 EEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWA 274 (582)
T ss_dssp CEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGG
T ss_pred CEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcc
Confidence 86432211100 0000123567777777777653
Q ss_pred -----------C----CeEEEEECCCCcEEEEeee---c-----C--cEEEEEEe-cCCC---EEEEEeCCCeEEEEECC
Q 043172 372 -----------E----GYILLVSSKTKELIGTLKM---N-----G--TVRSLAFA-DDGK---QLLSSGGDGQVYHWDLR 422 (564)
Q Consensus 372 -----------d----g~I~lwd~~t~~~~~~~~~---~-----~--~V~~l~~s-pdg~---~l~s~s~dg~V~lwD~~ 422 (564)
+ +.|..+|..+++.+..+.. . . ...-+... .+|+ .++.++.+|.|+++|..
T Consensus 275 r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~ 354 (582)
T 1flg_A 275 RTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRS 354 (582)
T ss_dssp GSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETT
T ss_pred cccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECC
Confidence 2 6899999999999988762 1 0 11112222 4674 78888999999999999
Q ss_pred CCceeEEEeecCCc--------------------------------------------ceEEEEECCCCCEEEEEe----
Q 043172 423 TRTCIHRAVDEGCI--------------------------------------------NGTALCTSPDGTFFAAGS---- 454 (564)
Q Consensus 423 ~~~~~~~~~~~~~~--------------------------------------------~i~~l~~sp~g~~lasgs---- 454 (564)
+++.+..+...... .-..++++|+...+++..
T Consensus 355 tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~ 434 (582)
T 1flg_A 355 NGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWK 434 (582)
T ss_dssp TCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEE
T ss_pred CCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcc
Confidence 99987665432100 001345666655554432
Q ss_pred -----------------------------CCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCC
Q 043172 455 -----------------------------DSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKK 505 (564)
Q Consensus 455 -----------------------------~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d 505 (564)
..|.|..||+.++ +.+...... .++..-.....+.++++++. |
T Consensus 435 ~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG-----~~~W~~~~~-~~~~~g~~~tagglvf~g~~--d 506 (582)
T 1flg_A 435 EDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSG-----KVVWEHKEH-LPLWAGVLATAGNLVFTGTG--D 506 (582)
T ss_dssp EEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTC-----CEEEEEEES-SCCCSCCEEETTTEEEEECT--T
T ss_pred eeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCC-----CEEEEecCC-CCCcccceEeCCCEEEEECC--C
Confidence 2577888888876 555544322 22222122234667888887 9
Q ss_pred CeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCC-EEEE
Q 043172 506 NSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGG-FMAV 546 (564)
Q Consensus 506 ~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~-~Las 546 (564)
+.|+.||..+++.+-.+........ .-+.|..+|+ |+++
T Consensus 507 g~l~A~D~~tG~~lW~~~~~~g~~a--~P~~y~~~G~qYv~~ 546 (582)
T 1flg_A 507 GYFKAFDAKSGKELWKFQTGSGIVS--PPITWEQDGEQYLGV 546 (582)
T ss_dssp SEEEEEETTTCCEEEEEECSSCCCS--CCEEEEETTEEEEEE
T ss_pred CcEEEEECCCCCEEEEecCCCCccc--CceEEEECCEEEEEE
Confidence 9999999999998876655432222 2356677887 4443
No 275
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.53 E-value=5.8e-05 Score=72.22 Aligned_cols=198 Identities=11% Similarity=0.063 Sum_probs=127.7
Q ss_pred eCCcCeEEEEEeeCCCEEEE-EeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 043172 304 LEDCPVRKASFLPDGSQAII-AGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKT 382 (564)
Q Consensus 304 ~~~~~I~~l~fspdg~~l~s-~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t 382 (564)
+-...+..++|+|+++.|++ ...++.|...|+. +++.+...+.+.. ....+++.+++.++++.-.++.+.++++..
T Consensus 24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~--D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~ 100 (255)
T 3qqz_A 24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVK--DLETIEYIGDNQFVISDERDYAIYVISLTP 100 (255)
T ss_dssp TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCS--SEEEEEECSTTEEEEEETTTTEEEEEEECT
T ss_pred CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCC--ChHHeEEeCCCEEEEEECCCCcEEEEEcCC
Confidence 34457899999998777765 5578899999998 7766555555443 478999999988766655678899998765
Q ss_pred CcE---EEEee-------ecCcEEEEEEecCCCEEEEEeCCC--eEEEEECC-CCceeEEEee------cCCcceEEEEE
Q 043172 383 KEL---IGTLK-------MNGTVRSLAFADDGKQLLSSGGDG--QVYHWDLR-TRTCIHRAVD------EGCINGTALCT 443 (564)
Q Consensus 383 ~~~---~~~~~-------~~~~V~~l~~spdg~~l~s~s~dg--~V~lwD~~-~~~~~~~~~~------~~~~~i~~l~~ 443 (564)
... +.... .+.....++|.|.++.|+++.... .|+.|+-. ....+..... ........+++
T Consensus 101 ~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~ 180 (255)
T 3qqz_A 101 NSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEF 180 (255)
T ss_dssp TCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEE
T ss_pred CCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEE
Confidence 442 22221 234568999999987777776644 45555511 1112222211 11224578999
Q ss_pred CCCCC-EEEEEeCCCcEEEEeCCcccCCcceeeEE--ccc-c------ccceeEEEEcCCCcEEEEEecCCCCeEEEEEc
Q 043172 444 SPDGT-FFAAGSDSGIVNVYNRQEFLGGKRKPIKT--IEN-L------TTKVDFMKFNNDAQILAICSTMKKNSLKLIHI 513 (564)
Q Consensus 444 sp~g~-~lasgs~dg~V~iwd~~~~~~~~~~~~~~--~~~-~------~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl 513 (564)
+|... +++....+..|.++|... +++.. +.. . ....-.|+|.++|+ |++.|. .+.++.+.-
T Consensus 181 dp~tg~lliLS~~s~~L~~~d~~g------~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE--~n~~y~f~~ 251 (255)
T 3qqz_A 181 NQQKNTLLVLSHESRALQEVTLVG------EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSE--PNRFYRFTP 251 (255)
T ss_dssp ETTTTEEEEEETTTTEEEEECTTC------CEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEET--TTEEEEEEC
T ss_pred cCCCCeEEEEECCCCeEEEEcCCC------CEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcC--CceEEEEEe
Confidence 98754 555566678899999774 33333 321 1 12457899999997 555576 566666643
No 276
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.52 E-value=3.3e-05 Score=83.64 Aligned_cols=265 Identities=13% Similarity=0.121 Sum_probs=155.0
Q ss_pred EEEcCCCCE----EEEEeCCCcEEEEEecCCCCceeEEEEeCC----cCeEE-EEEeeCCCEEEEEe------CCCeEEE
Q 043172 268 VQFHRNAQL----LLVAGLDRRLRFFQIDGKRNTKIQSIFLED----CPVRK-ASFLPDGSQAIIAG------RRKFFYS 332 (564)
Q Consensus 268 l~fspdg~~----l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~----~~I~~-l~fspdg~~l~s~~------~dg~i~i 332 (564)
++++|.+.. |++++.|+.|.-+|..++ ..+-...... ..+.+ ..+ .++ .|++++ .++.|+.
T Consensus 111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG--~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A 186 (599)
T 1w6s_A 111 LAYWPGDGKTPALILKTQLDGNVAALNAETG--ETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTA 186 (599)
T ss_dssp CEEECCCSSSCCEEEEECTTSEEEEEETTTC--CEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEE
T ss_pred eEEEecCCcceeEEEEEcCCCEEEEEECCCC--CEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEE
Confidence 455443434 788888898888877643 3444433221 01221 111 244 566554 3789999
Q ss_pred EECCCCceeeeccccccC----------------------------------Ccce-EEEEEcCCCCEEEEEeCC-----
Q 043172 333 LDLVKAKADKIGPLVGRE----------------------------------EKSL-EFFEVSPDSSVIAFVGNE----- 372 (564)
Q Consensus 333 wdl~~~~~~~~~~~~~~~----------------------------------~~~v-~~~~~spdg~~la~~~~d----- 372 (564)
+|..+|+..-........ ...+ ..+++.+...+++++..+
T Consensus 187 ~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~ 266 (599)
T 1w6s_A 187 YDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWN 266 (599)
T ss_dssp EETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSC
T ss_pred EECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCcccc
Confidence 999999864322111100 0001 135666777788777654
Q ss_pred -----------CeEEEEECCCCcEEEEeeec---C-------cEEEEEEe-cCC---CEEEEEeCCCeEEEEECCCCcee
Q 043172 373 -----------GYILLVSSKTKELIGTLKMN---G-------TVRSLAFA-DDG---KQLLSSGGDGQVYHWDLRTRTCI 427 (564)
Q Consensus 373 -----------g~I~lwd~~t~~~~~~~~~~---~-------~V~~l~~s-pdg---~~l~s~s~dg~V~lwD~~~~~~~ 427 (564)
+.|..+|..+++.+..+... . ...-+... .+| ..++.++.+|.++++|..+++.+
T Consensus 267 ~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 346 (599)
T 1w6s_A 267 ETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALV 346 (599)
T ss_dssp GGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred CcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEe
Confidence 48999999999998887721 1 11112222 467 46777889999999999999987
Q ss_pred EEEeecC------------Cc--------------------------ceEEEEECCCCCEEEEEe---------------
Q 043172 428 HRAVDEG------------CI--------------------------NGTALCTSPDGTFFAAGS--------------- 454 (564)
Q Consensus 428 ~~~~~~~------------~~--------------------------~i~~l~~sp~g~~lasgs--------------- 454 (564)
....... .. .-..++++|+..++++..
T Consensus 347 w~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~ 426 (599)
T 1w6s_A 347 SANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYK 426 (599)
T ss_dssp EEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCC
T ss_pred ecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeeccccccc
Confidence 6654211 00 012456777766655432
Q ss_pred ------------------------CCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEE
Q 043172 455 ------------------------DSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKL 510 (564)
Q Consensus 455 ------------------------~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~l 510 (564)
..|.|..||+.++ +.+..... ..++..-.+...+.++++++. ++.|+.
T Consensus 427 ~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG-----~~~W~~~~-~~~~~~g~~~tagg~vf~gt~--dg~l~A 498 (599)
T 1w6s_A 427 AGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITG-----DYKWEKME-RFAVWGGTMATAGDLVFYGTL--DGYLKA 498 (599)
T ss_dssp TTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTC-----CEEEEEEE-SSCCCSBCEEETTTEEEEECT--TSEEEE
T ss_pred CCcceecccceeccCCcCCcccCCCcCeEEEEECCCC-----CEEeEecC-CCCccCcceEecCCEEEEECC--CCeEEE
Confidence 2356777777765 44444431 112211112335667777877 999999
Q ss_pred EEcCCCceeccCCCCCCCCCCcEEEEEeCCCC-EEEE
Q 043172 511 IHIPSYNVFSNWPPANRNLQYPRCLDFSPGGG-FMAV 546 (564)
Q Consensus 511 wdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~-~Las 546 (564)
||..+++.+-.+........ .-+.|..+|+ |+++
T Consensus 499 ~D~~tG~~lW~~~l~~g~~~--~P~~y~~~G~qyv~~ 533 (599)
T 1w6s_A 499 RDSDTGDLLWKFKIPSGAIG--YPMTYTHKGTQYVAI 533 (599)
T ss_dssp EETTTCCEEEEEECSSCCCS--CCEEEEETTEEEEEE
T ss_pred EECCCCCEEEEeeCCCCcEe--ccEEEEeCCEEEEEE
Confidence 99999998876654432222 2355667776 4443
No 277
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.52 E-value=5.4e-05 Score=78.74 Aligned_cols=238 Identities=13% Similarity=0.148 Sum_probs=139.7
Q ss_pred CCeeEEEEcC-CCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCC-----CeEEEEECC
Q 043172 263 GPINSVQFHR-NAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRR-----KFFYSLDLV 336 (564)
Q Consensus 263 ~~V~~l~fsp-dg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~d-----g~i~iwdl~ 336 (564)
.....|+|+| ++..|+++...+.|+.+++.+. .+..+.........++|+++|++|+++... ..+.+++..
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~---~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~ 213 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKE---YVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE 213 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTT---EEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG
T ss_pred CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCC---EEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC
Confidence 3568899998 4556666655577888877643 333444445567899999999977777642 134444433
Q ss_pred CCceeeeccccccCCcceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEeee--cCcEEEEEEecCCCEEEEE-eC
Q 043172 337 KAKADKIGPLVGREEKSLEFFEVSP-DSSVIAFVGNEGYILLVSSKTKELIGTLKM--NGTVRSLAFADDGKQLLSS-GG 412 (564)
Q Consensus 337 ~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~la~~~~dg~I~lwd~~t~~~~~~~~~--~~~V~~l~~spdg~~l~s~-s~ 412 (564)
+.......+.. ......++++| +|.++++-...+.|..++..++........ ......++|+|+|++|+++ ..
T Consensus 214 -g~~~~~~~l~~--~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~ 290 (430)
T 3tc9_A 214 -SGFKVITELTK--GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVN 290 (430)
T ss_dssp -GTSCSEEEEEE--CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETT
T ss_pred -Cceeeeeeecc--CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECC
Confidence 32211111111 11356788999 666666655678999999987765333332 2457899999999965555 45
Q ss_pred CCeEEEEECCC--Cce--eEEEeec-C-------------CcceE-EEEEC--------CCCCEEEEEeCCCcEEEEeCC
Q 043172 413 DGQVYHWDLRT--RTC--IHRAVDE-G-------------CINGT-ALCTS--------PDGTFFAAGSDSGIVNVYNRQ 465 (564)
Q Consensus 413 dg~V~lwD~~~--~~~--~~~~~~~-~-------------~~~i~-~l~~s--------p~g~~lasgs~dg~V~iwd~~ 465 (564)
.+.|+.++... +.. +..+... + -.... .+++. ++|.++++-...+.|+.++..
T Consensus 291 ~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~~ 370 (430)
T 3tc9_A 291 QHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTPQ 370 (430)
T ss_dssp TTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECTT
T ss_pred CCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECCC
Confidence 78899987653 221 1122211 0 00112 45543 345566665667788888843
Q ss_pred cccCCcceeeEEcccc------------------ccceeEEEEcCCCcEEEEEecCCCCeEEEEEcC
Q 043172 466 EFLGGKRKPIKTIENL------------------TTKVDFMKFNNDAQILAICSTMKKNSLKLIHIP 514 (564)
Q Consensus 466 ~~~~~~~~~~~~~~~~------------------~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~ 514 (564)
+ . +.++.+. -.....|++.|++..|+++... ++.|+.+++.
T Consensus 371 -G-----~-v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~-n~rIr~i~~e 429 (430)
T 3tc9_A 371 -G-----R-VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRE-NRRIRKIGYE 429 (430)
T ss_dssp -S-----E-EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGG-GTEEEEEEEC
T ss_pred -C-----c-EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECC-CCeEEEEccC
Confidence 2 1 1111110 1256889999954444444432 6788887753
No 278
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.52 E-value=0.00015 Score=74.24 Aligned_cols=240 Identities=8% Similarity=-0.052 Sum_probs=145.3
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEe-CCCeEEEEECCCCceee
Q 043172 264 PINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAG-RRKFFYSLDLVKAKADK 342 (564)
Q Consensus 264 ~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~-~dg~i~iwdl~~~~~~~ 342 (564)
.-+|.+..+ ..+|+.+. ...|+.+++++.. +..+......+..++|.+.+..|+.+. ..+.|+.+++.++....
T Consensus 78 ~~~C~~~~~-~~~l~~~~-~~~I~~i~~~~~~---~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~ 152 (386)
T 3v65_B 78 RRSCKALGP-EPVLLFAN-RIDIRQVLPHRSE---YTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE 152 (386)
T ss_dssp SSCEEECSS-CCEEEEEC-BSCEEEECTTSCC---CEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEE
T ss_pred CCeECCccc-cceeEeec-CccceeeccCCCc---EEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEE
Confidence 345666666 34454443 3567777776543 222333344678999998777777665 56889999998775433
Q ss_pred eccccccCCcceEEEEEcCCCCEEEEE-eCCCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEeC-C-CeEEE
Q 043172 343 IGPLVGREEKSLEFFEVSPDSSVIAFV-GNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGG-D-GQVYH 418 (564)
Q Consensus 343 ~~~~~~~~~~~v~~~~~spdg~~la~~-~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~-d-g~V~l 418 (564)
+... + ......+++.+.+..|+.+ ...+.|.++++........+. .-.....+++.|.+..|+.+.. . +.|+.
T Consensus 153 ~~~~-~--~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r 229 (386)
T 3v65_B 153 VVST-G--LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEA 229 (386)
T ss_dssp EECS-S--CSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEE
T ss_pred EEeC-C--CCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEE
Confidence 3211 1 1134578899865555544 456789999887554333333 2356899999997766665543 4 68999
Q ss_pred EECCCCceeEEEeecCCcceEEEEECCCCCEEE-EEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEE
Q 043172 419 WDLRTRTCIHRAVDEGCINGTALCTSPDGTFFA-AGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQIL 497 (564)
Q Consensus 419 wD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~la-sgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~L 497 (564)
+++.... ...+..........|+++|++..|+ +-+..+.|..+++... .....+.........|++. .+ .|
T Consensus 230 ~~~dG~~-~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~-----~~~~~~~~~~~~P~giav~-~~-~l 301 (386)
T 3v65_B 230 SSMDGSG-RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS-----HRKAVISQGLPHPFAITVF-ED-SL 301 (386)
T ss_dssp EETTSCS-CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSC-----SCEEEECSSCSSEEEEEEE-TT-EE
T ss_pred EeCCCCC-cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC-----eeEEEEECCCCCceEEEEE-CC-EE
Confidence 9987433 3333333333467899998666554 4456778999998753 2222222223455677773 33 44
Q ss_pred EEEecCCCCeEEEEEcCCCceec
Q 043172 498 AICSTMKKNSLKLIHIPSYNVFS 520 (564)
Q Consensus 498 a~~s~~~d~~I~lwdl~s~~~~~ 520 (564)
+.+... .+.|..++..++....
T Consensus 302 y~td~~-~~~V~~~~~~~G~~~~ 323 (386)
T 3v65_B 302 YWTDWH-TKSINSANKFTGKNQE 323 (386)
T ss_dssp EEEETT-TTEEEEEETTTCCSCE
T ss_pred EEeeCC-CCeEEEEECCCCcceE
Confidence 444432 7888888866655433
No 279
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.50 E-value=0.00025 Score=71.44 Aligned_cols=231 Identities=6% Similarity=-0.029 Sum_probs=141.6
Q ss_pred EEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCcEEEE
Q 043172 310 RKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVG-NEGYILLVSSKTKELIGT 388 (564)
Q Consensus 310 ~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~-~dg~I~lwd~~t~~~~~~ 388 (564)
+|.+..++ .+|+.+. ...|+..++.+.....+. .+. ..+..++|++....|+.+. ..+.|..+++........
T Consensus 37 ~C~~~~~~-~~ll~~~-~~~I~~i~~~g~~~~~~~--~~~--~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~ 110 (349)
T 3v64_C 37 SCKALGPE-PVLLFAN-RIDIRQVLPHRSEYTLLL--NNL--ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV 110 (349)
T ss_dssp CEEESSSC-CEEEEEC-BSCEEEECTTSCCEEEEE--CSC--SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred cccccccC-ceeEeec-ccceEEEeCCCCeeEEee--cCC--CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEE
Confidence 34444442 3444443 445888888766553332 222 2478899998766666554 568899999887654443
Q ss_pred ee-ecCcEEEEEEecCCCEE-EEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEE-EEeCC-CcEEEEeC
Q 043172 389 LK-MNGTVRSLAFADDGKQL-LSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFA-AGSDS-GIVNVYNR 464 (564)
Q Consensus 389 ~~-~~~~V~~l~~spdg~~l-~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~la-sgs~d-g~V~iwd~ 464 (564)
+. .......+++.+.+..| ++-...+.|.++++..... ..+..........++++|.+.+|+ +-... +.|..+++
T Consensus 111 ~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~ 189 (349)
T 3v64_C 111 VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR-KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM 189 (349)
T ss_dssp ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred EeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce-EEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeC
Confidence 33 22456789999855555 4445568999999875433 333323333568899998665544 44444 78888887
Q ss_pred CcccCCcceeeEEc-cccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCE
Q 043172 465 QEFLGGKRKPIKTI-ENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGF 543 (564)
Q Consensus 465 ~~~~~~~~~~~~~~-~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~ 543 (564)
... ....+ .........|+|+|++..|+.+... .+.|..+++........+. .......++++. .+..
T Consensus 190 dG~------~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~-~~~I~~~~~dG~~~~~~~~---~~~~~P~giav~-~~~l 258 (349)
T 3v64_C 190 DGS------GRRIIADTHLFWPNGLTIDYAGRRMYWVDAK-HHVIERANLDGSHRKAVIS---QGLPHPFAITVF-EDSL 258 (349)
T ss_dssp TSC------SCEESCCSSCSCEEEEEEETTTTEEEEEETT-TTEEEEEETTSCSCEEEEC---SSCSSEEEEEEE-TTEE
T ss_pred CCC------CcEEEEECCCCCcceEEEeCCCCEEEEEECC-CCEEEEEeCCCCceEEEEe---CCCCCceEEEEE-CCEE
Confidence 753 22222 2234467899999988888777653 6889999986432221111 123567888883 4455
Q ss_pred EEEEcCCCeEEEEEc
Q 043172 544 MAVGNAAGKVFLYKL 558 (564)
Q Consensus 544 Lasgs~dG~V~lw~l 558 (564)
+++-...+.|..++.
T Consensus 259 y~td~~~~~V~~~~~ 273 (349)
T 3v64_C 259 YWTDWHTKSINSANK 273 (349)
T ss_dssp EEEETTTTEEEEEET
T ss_pred EEecCCCCeEEEEEc
Confidence 555556677777763
No 280
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.47 E-value=7.1e-05 Score=77.90 Aligned_cols=236 Identities=12% Similarity=0.092 Sum_probs=140.0
Q ss_pred CCeeEEEEcCC--CCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCC----C-eEEEEEC
Q 043172 263 GPINSVQFHRN--AQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRR----K-FFYSLDL 335 (564)
Q Consensus 263 ~~V~~l~fspd--g~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~d----g-~i~iwdl 335 (564)
.....|+|+|+ ...|+.+...+.|+.++.... .+..+.........++|+++|+ |+++... . .+..++.
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g---~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~ 214 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQ---YVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTR 214 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTT---EEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECG
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCC---EEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEEC
Confidence 45679999995 445555544478888887533 3444444455688999999999 5555432 1 2333333
Q ss_pred CCCceeeeccccccCCcceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEee---ecCcEEEEEEecCCCEEEEEe
Q 043172 336 VKAKADKIGPLVGREEKSLEFFEVSP-DSSVIAFVGNEGYILLVSSKTKELIGTLK---MNGTVRSLAFADDGKQLLSSG 411 (564)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~la~~~~dg~I~lwd~~t~~~~~~~~---~~~~V~~l~~spdg~~l~s~s 411 (564)
..+... ...+.. ......++++| +|.++++-..++.|+.++..++.....+. .......++|+|+++.|+++.
T Consensus 215 ~~~~~~-~~~~~~--~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad 291 (433)
T 4hw6_A 215 ASGFTE-RLSLCN--ARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIY 291 (433)
T ss_dssp GGTTCC-EEEEEE--CSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEE
T ss_pred CCCeec-cccccc--cCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEe
Confidence 222110 000111 11345688999 66655555567899999998787633332 122345799999999666554
Q ss_pred -CCCeEEEEECCC--Cce--eEEEeec-C-------------CcceEEEEE---------CCCCCEEEEEeCCCcEEEEe
Q 043172 412 -GDGQVYHWDLRT--RTC--IHRAVDE-G-------------CINGTALCT---------SPDGTFFAAGSDSGIVNVYN 463 (564)
Q Consensus 412 -~dg~V~lwD~~~--~~~--~~~~~~~-~-------------~~~i~~l~~---------sp~g~~lasgs~dg~V~iwd 463 (564)
..+.|+.+++.. +.. ...+... + -.....+++ .++|.++++-...+.|+.++
T Consensus 292 ~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~ 371 (433)
T 4hw6_A 292 NGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLT 371 (433)
T ss_dssp TTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEEC
T ss_pred CCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEEC
Confidence 568899988752 321 1122211 0 112456888 77787777777788899998
Q ss_pred CCcccCCcceeeEEccc------------------cccceeEEEEc-CCCcEEEEEecCCCCeEEEEEcC
Q 043172 464 RQEFLGGKRKPIKTIEN------------------LTTKVDFMKFN-NDAQILAICSTMKKNSLKLIHIP 514 (564)
Q Consensus 464 ~~~~~~~~~~~~~~~~~------------------~~~~I~~l~fs-pdg~~La~~s~~~d~~I~lwdl~ 514 (564)
... .+.++.+ .-.....|++. ++|.++++-.. ++.|+.+++.
T Consensus 372 ~~G-------~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~--n~rIr~i~~e 432 (433)
T 4hw6_A 372 PEG-------RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCD--NHRVRKIAPE 432 (433)
T ss_dssp TTS-------EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGG--GTEEEEEEEC
T ss_pred CCC-------CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCC--CCEEEEEecC
Confidence 532 1222211 11246789999 56655554444 6788888763
No 281
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.40 E-value=0.0013 Score=65.10 Aligned_cols=228 Identities=10% Similarity=-0.011 Sum_probs=136.8
Q ss_pred EEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEe-CCCeEEEEECCC----CceeeeccccccC
Q 043172 276 LLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAG-RRKFFYSLDLVK----AKADKIGPLVGRE 350 (564)
Q Consensus 276 ~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~-~dg~i~iwdl~~----~~~~~~~~~~~~~ 350 (564)
+|+.+. ...|+..++++.. ....+. ....+..++|++.+..|+.+. ..+.|+.+++.+ .....+ +....
T Consensus 3 ~ll~~~-~~~I~~i~~~~~~--~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~--~~~~~ 76 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDRSE--YTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV--ISRDI 76 (316)
T ss_dssp EEEEEC-BSSEEEEETTSCC--CEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEE--ECSSC
T ss_pred EEEEEC-CCeEEEEECCCcc--eEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEE--EeCCC
Confidence 455544 3568888887543 222232 345678999999777777665 568999999876 221111 11111
Q ss_pred CcceEEEEEcCCCCEEEEE-eCCCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEeCC--CeEEEEECCCCce
Q 043172 351 EKSLEFFEVSPDSSVIAFV-GNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGGD--GQVYHWDLRTRTC 426 (564)
Q Consensus 351 ~~~v~~~~~spdg~~la~~-~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~d--g~V~lwD~~~~~~ 426 (564)
.....+++.+.+..|+.+ ...+.|.++++........+. ......++++.|.+..|+.+... +.|..+++.. ..
T Consensus 77 -~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~ 154 (316)
T 1ijq_A 77 -QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VD 154 (316)
T ss_dssp -SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CC
T ss_pred -CCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CC
Confidence 235689998765555544 567899999987654433333 23568899999976666655542 6899998864 33
Q ss_pred eEEEeecCCcceEEEEECCCCCEEEEE-eCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCC
Q 043172 427 IHRAVDEGCINGTALCTSPDGTFFAAG-SDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKK 505 (564)
Q Consensus 427 ~~~~~~~~~~~i~~l~~sp~g~~lasg-s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d 505 (564)
...+..........+++++++..|+.+ +..+.|..+++... ..+.+............|++. .+ .|+.+... .
T Consensus 155 ~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~---~~~~~~~~~~~~~~P~giav~-~~-~ly~~d~~-~ 228 (316)
T 1ijq_A 155 IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG---NRKTILEDEKRLAHPFSLAVF-ED-KVFWTDII-N 228 (316)
T ss_dssp EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---SCEEEEECTTTTSSEEEEEEE-TT-EEEEEETT-T
T ss_pred eEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC---ceEEEeecCCccCCcEEEEEE-CC-EEEEEECC-C
Confidence 333332233356789999876655544 56679999998742 122232222222345677774 34 45444432 6
Q ss_pred CeEEEEEcCCCc
Q 043172 506 NSLKLIHIPSYN 517 (564)
Q Consensus 506 ~~I~lwdl~s~~ 517 (564)
+.|..++..+++
T Consensus 229 ~~V~~~~~~~g~ 240 (316)
T 1ijq_A 229 EAIFSANRLTGS 240 (316)
T ss_dssp TEEEEEETTTCC
T ss_pred CeEEEEeCCCCc
Confidence 888888876554
No 282
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.39 E-value=0.00011 Score=73.15 Aligned_cols=188 Identities=18% Similarity=0.244 Sum_probs=123.8
Q ss_pred CCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeC----CCE--E-EEEeC---CCeEEEEEC--CCCce
Q 043172 273 NAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPD----GSQ--A-IIAGR---RKFFYSLDL--VKAKA 340 (564)
Q Consensus 273 dg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspd----g~~--l-~s~~~---dg~i~iwdl--~~~~~ 340 (564)
...+++.....+-+.+||+++. .++.+.. +.++.+..-|+ |+. + +++.+ ++.|.+|++ .++..
T Consensus 39 ~~s~ii~t~k~~gL~Vydl~G~---~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l 113 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSLDGK---MLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTL 113 (355)
T ss_dssp GGCEEEEEETTTEEEEEETTSC---EEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCE
T ss_pred CccEEEEEcCCCCEEEEcCCCc---EEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCce
Confidence 3456666667788999999643 5666543 56677766652 322 3 33333 478999966 45554
Q ss_pred eeeccc--c-ccCCcceEEEEE--cCC-CC-EEEEEeCCCeEEEEEC-------CCCcEEEEeeecCcEEEEEEecCCCE
Q 043172 341 DKIGPL--V-GREEKSLEFFEV--SPD-SS-VIAFVGNEGYILLVSS-------KTKELIGTLKMNGTVRSLAFADDGKQ 406 (564)
Q Consensus 341 ~~~~~~--~-~~~~~~v~~~~~--spd-g~-~la~~~~dg~I~lwd~-------~t~~~~~~~~~~~~V~~l~~spdg~~ 406 (564)
..+..+ . +.....+..+|+ +|. +. ++++...+|.+..|.+ .+.+.++++...+.+..+...+....
T Consensus 114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~ 193 (355)
T 3amr_A 114 QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGR 193 (355)
T ss_dssp EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTE
T ss_pred eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCe
Confidence 333221 1 111134566777 774 44 6777788899999988 34467788887888999999998889
Q ss_pred EEEEeCCCeEEEEECC-----CCceeEEEeecCCc-ceEEEEE--CCCCC-EEEEEe-CCCcEEEEeCC
Q 043172 407 LLSSGGDGQVYHWDLR-----TRTCIHRAVDEGCI-NGTALCT--SPDGT-FFAAGS-DSGIVNVYNRQ 465 (564)
Q Consensus 407 l~s~s~dg~V~lwD~~-----~~~~~~~~~~~~~~-~i~~l~~--sp~g~-~lasgs-~dg~V~iwd~~ 465 (564)
|+++-.+..|+.++.. +++.+..+...+.. .+..|++ .++++ ||++.+ .+.++.|||..
T Consensus 194 Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 9999998888888865 34455444322222 4556666 56666 666666 56799999996
No 283
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.36 E-value=0.00047 Score=70.84 Aligned_cols=228 Identities=10% Similarity=-0.026 Sum_probs=139.9
Q ss_pred EEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEe-CCCeEEEEECCCC----cEEEEee-ecC
Q 043172 320 QAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVG-NEGYILLVSSKTK----ELIGTLK-MNG 393 (564)
Q Consensus 320 ~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~-~dg~I~lwd~~t~----~~~~~~~-~~~ 393 (564)
+|+.+. ...|+..++.......+. .. ...+..++|++....|+.+. ..+.|+.+++... .....+. ...
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~--~~--~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~ 159 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLI--PN--LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ 159 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEE--CS--CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCS
T ss_pred eeEEec-cceeEEEccCCcceeEec--cc--cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCC
Confidence 444444 467888898877654332 12 22578999999776666654 4688999998752 2222232 335
Q ss_pred cEEEEEEecCCCEEE-EEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEe--CCCcEEEEeCCcccCC
Q 043172 394 TVRSLAFADDGKQLL-SSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGS--DSGIVNVYNRQEFLGG 470 (564)
Q Consensus 394 ~V~~l~~spdg~~l~-s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs--~dg~V~iwd~~~~~~~ 470 (564)
.+..+++.+.+..|+ +-...+.|.+.++........+ .........|+++|.+.+|+... ..+.|...++...
T Consensus 160 ~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~-~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~--- 235 (400)
T 3p5b_L 160 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF-RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV--- 235 (400)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEE-ECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSC---
T ss_pred CcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEE-eCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCC---
Confidence 678999998544444 4456789999998765443333 33333468899999766555543 2478888888753
Q ss_pred cceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCC
Q 043172 471 KRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAA 550 (564)
Q Consensus 471 ~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~d 550 (564)
.....+...-.....|++++++..|+.+... .+.|..+++...... .+...........+|++. .+.++++-...
T Consensus 236 --~~~~~~~~~l~~P~glavd~~~~~lY~aD~~-~~~I~~~d~dG~~~~-~~~~~~~~l~~P~gl~v~-~~~lywtd~~~ 310 (400)
T 3p5b_L 236 --DIYSLVTENIQWPNGITLDLLSGRLYWVDSK-LHSISSIDVNGGNRK-TILEDEKRLAHPFSLAVF-EDKVFWTDIIN 310 (400)
T ss_dssp --SCEEEECSSCSCEEEEEEETTTTEEEEEETT-TTEEEEEETTSCCCE-EEEECSSTTSSEEEEEEE-TTEEEEEESSS
T ss_pred --ccEEEEECCCCceEEEEEEeCCCEEEEEECC-CCEEEEEeCCCCccE-EEEeCCCCCCCCEEEEEe-CCEEEEecCCC
Confidence 2222222333567899999988888887653 688999998643322 111111223456677773 33444555566
Q ss_pred CeEEEEEcCCC
Q 043172 551 GKVFLYKLNHY 561 (564)
Q Consensus 551 G~V~lw~l~~~ 561 (564)
+.|..++..+.
T Consensus 311 ~~V~~~~~~~G 321 (400)
T 3p5b_L 311 EAIFSANRLTG 321 (400)
T ss_dssp CSEEEEESSSC
T ss_pred CeEEEEEcCCC
Confidence 77887775443
No 284
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.36 E-value=0.00022 Score=72.93 Aligned_cols=231 Identities=6% Similarity=-0.057 Sum_probs=141.9
Q ss_pred EEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCcEEEEe
Q 043172 311 KASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVG-NEGYILLVSSKTKELIGTL 389 (564)
Q Consensus 311 ~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~-~dg~I~lwd~~t~~~~~~~ 389 (564)
|.+..+ ..+|+.+. ...|+.+++.+.....+. .+. ..+..++|.+.+..|+.+. ..+.|..+++........+
T Consensus 81 C~~~~~-~~~l~~~~-~~~I~~i~~~~~~~~~~~--~~~--~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~ 154 (386)
T 3v65_B 81 CKALGP-EPVLLFAN-RIDIRQVLPHRSEYTLLL--NNL--ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV 154 (386)
T ss_dssp EEECSS-CCEEEEEC-BSCEEEECTTSCCCEEEE--CSC--SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEE
T ss_pred ECCccc-cceeEeec-CccceeeccCCCcEEEEe--cCC--CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEE
Confidence 333334 33444443 456888888876654332 122 2478899998766666554 5689999998876644433
Q ss_pred e-ecCcEEEEEEecCCCEEE-EEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEE-eCC-CcEEEEeCC
Q 043172 390 K-MNGTVRSLAFADDGKQLL-SSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAG-SDS-GIVNVYNRQ 465 (564)
Q Consensus 390 ~-~~~~V~~l~~spdg~~l~-s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasg-s~d-g~V~iwd~~ 465 (564)
. .......+++.+.+..|+ +-...+.|.++++..... ..+..........++++|.+.+|+.. ... +.|..+++.
T Consensus 155 ~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~-~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d 233 (386)
T 3v65_B 155 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR-KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD 233 (386)
T ss_dssp CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC-EEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce-EEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC
Confidence 3 223567889988655554 445567899988875433 23333333356889999876655544 344 788888876
Q ss_pred cccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEE
Q 043172 466 EFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMA 545 (564)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~La 545 (564)
.. .....+.........|+|+|++..|+.+... .+.|..+++........+. ........|++ ..+.+++
T Consensus 234 G~-----~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~-~~~I~~~d~dG~~~~~~~~---~~~~~P~giav-~~~~ly~ 303 (386)
T 3v65_B 234 GS-----GRRIIADTHLFWPNGLTIDYAGRRMYWVDAK-HHVIERANLDGSHRKAVIS---QGLPHPFAITV-FEDSLYW 303 (386)
T ss_dssp SC-----SCEEEECSSCSCEEEEEEEGGGTEEEEEETT-TTEEEEECTTSCSCEEEEC---SSCSSEEEEEE-ETTEEEE
T ss_pred CC-----CcEEEEECCCCCeeeEEEeCCCCEEEEEECC-CCEEEEEeCCCCeeEEEEE---CCCCCceEEEE-ECCEEEE
Confidence 53 2222222234457899999988877777653 6889999986432221111 12356788888 3445555
Q ss_pred EEcCCCeEEEEEc
Q 043172 546 VGNAAGKVFLYKL 558 (564)
Q Consensus 546 sgs~dG~V~lw~l 558 (564)
+-...+.|..++.
T Consensus 304 td~~~~~V~~~~~ 316 (386)
T 3v65_B 304 TDWHTKSINSANK 316 (386)
T ss_dssp EETTTTEEEEEET
T ss_pred eeCCCCeEEEEEC
Confidence 5556777887774
No 285
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.34 E-value=0.0006 Score=67.69 Aligned_cols=230 Identities=9% Similarity=-0.026 Sum_probs=137.1
Q ss_pred EEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEe-CCCeEEEEECCCCceeeeccccccCCcce
Q 043172 276 LLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAG-RRKFFYSLDLVKAKADKIGPLVGREEKSL 354 (564)
Q Consensus 276 ~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~-~dg~i~iwdl~~~~~~~~~~~~~~~~~~v 354 (564)
+|+.+. ...|+.+++++........+.. -..+..++|.+.+..|+.+. ..+.|+.+++.++..... +........
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~-~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~--~~~~~l~~p 81 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIVVGG-LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN--VVVSGLLSP 81 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEEEEE-EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE--EEEECCSCC
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEEecC-CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE--EEcCCCCCc
Confidence 444443 4678888887653222222222 23466899998766776664 567899999887632111 111111235
Q ss_pred EEEEEcCCCCEEEEE-eCCCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEe--CCCeEEEEECCCCceeEEE
Q 043172 355 EFFEVSPDSSVIAFV-GNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSG--GDGQVYHWDLRTRTCIHRA 430 (564)
Q Consensus 355 ~~~~~spdg~~la~~-~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s--~dg~V~lwD~~~~~~~~~~ 430 (564)
..+++.+.+..|+.+ ...+.|.++++........+. .......+++.|.+..|+.+. ..+.|+.+++... ....+
T Consensus 82 ~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~ 160 (318)
T 3sov_A 82 DGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS-SRFII 160 (318)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSC-SCEEE
T ss_pred cEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCC-CeEEE
Confidence 678999755555444 456899999987544333232 335678999999766666665 2578999998643 33333
Q ss_pred eecCCcceEEEEECCCCCEEEE-EeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEE
Q 043172 431 VDEGCINGTALCTSPDGTFFAA-GSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLK 509 (564)
Q Consensus 431 ~~~~~~~i~~l~~sp~g~~las-gs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~ 509 (564)
....-.....|+++|++..|+. -+..+.|..+++... ..+.+ +.........+++.. ..|+.+.. ..+.|.
T Consensus 161 ~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~---~~~~~--~~~~~~~P~glav~~--~~lywtd~-~~~~V~ 232 (318)
T 3sov_A 161 INSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT---NRQAV--VKGSLPHPFALTLFE--DILYWTDW-STHSIL 232 (318)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---SCEEE--ECSCCSCEEEEEEET--TEEEEEET-TTTEEE
T ss_pred EECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCC---ceEEE--ecCCCCCceEEEEeC--CEEEEEec-CCCeEE
Confidence 3233334578999986665554 456788999998742 11222 122234456677743 34444433 278888
Q ss_pred EEEcCCCce
Q 043172 510 LIHIPSYNV 518 (564)
Q Consensus 510 lwdl~s~~~ 518 (564)
.++..++..
T Consensus 233 ~~~~~~G~~ 241 (318)
T 3sov_A 233 ACNKYTGEG 241 (318)
T ss_dssp EEETTTCCS
T ss_pred EEECCCCCc
Confidence 888866543
No 286
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.31 E-value=0.0016 Score=66.75 Aligned_cols=234 Identities=10% Similarity=-0.001 Sum_probs=139.9
Q ss_pred CEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEe-CCCeEEEEECCCCce-eeeccccccCCc
Q 043172 275 QLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAG-RRKFFYSLDLVKAKA-DKIGPLVGREEK 352 (564)
Q Consensus 275 ~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~-~dg~i~iwdl~~~~~-~~~~~~~~~~~~ 352 (564)
.+|+.+. ...|+..++++... ..+......+..++|++.+..|+.+. ..+.|+.+++..... .....+......
T Consensus 84 ~~ll~~~-~~~I~~i~l~~~~~---~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~ 159 (400)
T 3p5b_L 84 AYLFFTN-RHEVRKMTLDRSEY---TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ 159 (400)
T ss_dssp CEEEEEE-TTEEEEECTTSCSC---EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCS
T ss_pred ceeEEec-cceeEEEccCCcce---eEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCC
Confidence 3555544 46788888775432 22333455778999999777777765 567899999875220 001112221223
Q ss_pred ceEEEEEcCCCCEEEE-EeCCCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEeC--CCeEEEEECCCCceeE
Q 043172 353 SLEFFEVSPDSSVIAF-VGNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGG--DGQVYHWDLRTRTCIH 428 (564)
Q Consensus 353 ~v~~~~~spdg~~la~-~~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~--dg~V~lwD~~~~~~~~ 428 (564)
....+++.+.+..|+. -...+.|.+.++........+. .-.....|++.|.+..|+.+.. .+.|+..++.... ..
T Consensus 160 ~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~-~~ 238 (400)
T 3p5b_L 160 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IY 238 (400)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS-CE
T ss_pred CcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc-cE
Confidence 5778999985555544 4457899999987665544444 3346899999997666666542 4789999987433 33
Q ss_pred EEeecCCcceEEEEECCCCCEEEEE-eCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCe
Q 043172 429 RAVDEGCINGTALCTSPDGTFFAAG-SDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNS 507 (564)
Q Consensus 429 ~~~~~~~~~i~~l~~sp~g~~lasg-s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~ 507 (564)
.+....-.....|++++.+..|+.+ +..+.|..+++... ....+............|++ ++..|+.+... .+.
T Consensus 239 ~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~---~~~~~~~~~~~l~~P~gl~v--~~~~lywtd~~-~~~ 312 (400)
T 3p5b_L 239 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG---NRKTILEDEKRLAHPFSLAV--FEDKVFWTDII-NEA 312 (400)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---CCEEEEECSSTTSSEEEEEE--ETTEEEEEESS-SCS
T ss_pred EEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCC---ccEEEEeCCCCCCCCEEEEE--eCCEEEEecCC-CCe
Confidence 3333333356889999877666555 55678999998753 12222222122234456666 33445444432 678
Q ss_pred EEEEEcCCCcee
Q 043172 508 LKLIHIPSYNVF 519 (564)
Q Consensus 508 I~lwdl~s~~~~ 519 (564)
|..++..+++..
T Consensus 313 V~~~~~~~G~~~ 324 (400)
T 3p5b_L 313 IFSANRLTGSDV 324 (400)
T ss_dssp EEEEESSSCCCC
T ss_pred EEEEEcCCCCce
Confidence 888886666443
No 287
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.29 E-value=0.0013 Score=64.21 Aligned_cols=219 Identities=16% Similarity=0.239 Sum_probs=147.9
Q ss_pred CeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeeecCcEEEEEEecCCCEE
Q 043172 328 KFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQL 407 (564)
Q Consensus 328 g~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l 407 (564)
..|.|.|+..+......++ ...+.-.+|..+.||.-. ...+.++|+.+.+.+..+.....|.-=.|-.. +.|
T Consensus 49 ~~VvIiDl~n~~~~~Rrpi------~AdsAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~-~~L 120 (365)
T 2xzh_A 49 AQVVIIDMNDPSNPIRRPI------SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL-NTV 120 (365)
T ss_dssp EEEEEEETTSTTSCEEEEC------CCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCEEEEEECSS-SEE
T ss_pred CEEEEEECCCCCCcccccc------ccceeeeCCCccEEEEec-CCeEEEechHHhhhhcceecCCccEEEEecCC-CeE
Confidence 3788889988654221112 123456699999988876 68999999999999999988777776677643 455
Q ss_pred EEEeCCCeEEEEECCCC-ceeEEEeec---CCcceEEEEECCCCCEEEEEeC-------CCcEEEEeCCcccCCcceeeE
Q 043172 408 LSSGGDGQVYHWDLRTR-TCIHRAVDE---GCINGTALCTSPDGTFFAAGSD-------SGIVNVYNRQEFLGGKRKPIK 476 (564)
Q Consensus 408 ~s~s~dg~V~lwD~~~~-~~~~~~~~~---~~~~i~~l~~sp~g~~lasgs~-------dg~V~iwd~~~~~~~~~~~~~ 476 (564)
+..+ +..|+.|++... .+++.+..+ ....|.....+++.+|++..+- .|.+.+|.... +.-.
T Consensus 121 ~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er------~~sQ 193 (365)
T 2xzh_A 121 ALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR------KVSQ 193 (365)
T ss_dssp EEEE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT------TEEE
T ss_pred EEEc-CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecc------cccc
Confidence 5555 358999999753 444444433 2346777888999998876542 37889999886 4666
Q ss_pred EccccccceeEEEEcC---CCcEEEEEecCC-CCeEEEEEcCCC---c-ee-----c-cCCCCCCCCCCcEEEEEeCCCC
Q 043172 477 TIENLTTKVDFMKFNN---DAQILAICSTMK-KNSLKLIHIPSY---N-VF-----S-NWPPANRNLQYPRCLDFSPGGG 542 (564)
Q Consensus 477 ~~~~~~~~I~~l~fsp---dg~~La~~s~~~-d~~I~lwdl~s~---~-~~-----~-~~~~~~~~~~~V~~l~fspdg~ 542 (564)
.+.+|......+.+.. ..++++.+.... .+.++|.++... . .+ . .+|. .......-++..|+.-.
T Consensus 194 ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fpp-ea~~DFPVamqvs~kyg 272 (365)
T 2xzh_A 194 PIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPP-EAQNDFPVAMQISEKHD 272 (365)
T ss_dssp EECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCT-TCTTCCEEEEEEETTTT
T ss_pred eeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCc-cccCCceEEEEecccCC
Confidence 7777766554443321 123555555421 157999998432 1 11 0 1222 22346677899999888
Q ss_pred EEEEEcCCCeEEEEEcCCCC
Q 043172 543 FMAVGNAAGKVFLYKLNHYH 562 (564)
Q Consensus 543 ~Lasgs~dG~V~lw~l~~~~ 562 (564)
.++.-+.-|.|++||+.+..
T Consensus 273 viyviTK~G~ihlyDleTgt 292 (365)
T 2xzh_A 273 VVFLITKYGYIHLYDLETGT 292 (365)
T ss_dssp EEEEEETTSEEEEEETTTCC
T ss_pred EEEEEeCCcEEEEEEcccCc
Confidence 99999999999999998764
No 288
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=98.29 E-value=0.00072 Score=68.22 Aligned_cols=234 Identities=14% Similarity=0.106 Sum_probs=130.8
Q ss_pred cCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeecccc--ccCCcceEEEEEcCC---CCEEEEEeC----C----C
Q 043172 307 CPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLV--GREEKSLEFFEVSPD---SSVIAFVGN----E----G 373 (564)
Q Consensus 307 ~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~--~~~~~~v~~~~~spd---g~~la~~~~----d----g 373 (564)
.....++|.|+|+ |+++...+.|++++. .+. ..+..+. .........++++|+ +..|+++.. + +
T Consensus 29 ~~P~~ia~~pdG~-l~V~e~~g~I~~~d~-~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 29 EVPWSIAPLGGGR-YLVTERPGRLVLISP-SGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp SCEEEEEEEETTE-EEEEETTTEEEEECS-SCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCeEEEEcCCCe-EEEEeCCCEEEEEeC-CCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 3567899999997 555666799999973 454 2222211 112235789999997 555555443 2 5
Q ss_pred eEEEEECCCC--c-----EE-EEee--ecCcEEEEEEecCCCEEEEEeC-------------CCeEEEEECCCCc-----
Q 043172 374 YILLVSSKTK--E-----LI-GTLK--MNGTVRSLAFADDGKQLLSSGG-------------DGQVYHWDLRTRT----- 425 (564)
Q Consensus 374 ~I~lwd~~t~--~-----~~-~~~~--~~~~V~~l~~spdg~~l~s~s~-------------dg~V~lwD~~~~~----- 425 (564)
.|..|+.... . .+ ..+. .......|+|.|+|.++++.+. .|.|..++....-
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 7888877644 1 11 1122 1123467999999986665432 2566666654210
Q ss_pred --eeEEEeecCCcceEEEEECC-CCCEEEEEeCCC---cEEEEeCCccc-----------CCcceeeEEccccccceeEE
Q 043172 426 --CIHRAVDEGCINGTALCTSP-DGTFFAAGSDSG---IVNVYNRQEFL-----------GGKRKPIKTIENLTTKVDFM 488 (564)
Q Consensus 426 --~~~~~~~~~~~~i~~l~~sp-~g~~lasgs~dg---~V~iwd~~~~~-----------~~~~~~~~~~~~~~~~I~~l 488 (564)
....+.... .....++|+| +|+++++-.... .|++....... .....|+..+.........+
T Consensus 186 f~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~ 264 (354)
T 3a9g_A 186 FPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGA 264 (354)
T ss_dssp STTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEE
T ss_pred CCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcce
Confidence 011222222 2346899999 676555433222 24443321100 00113444542234567788
Q ss_pred EEc-------CCCcEEEEEecCCCCeEEEEEcCCC-cee--ccCCCCCCCCCCcEEEEEeCCCCEEEEEc
Q 043172 489 KFN-------NDAQILAICSTMKKNSLKLIHIPSY-NVF--SNWPPANRNLQYPRCLDFSPGGGFMAVGN 548 (564)
Q Consensus 489 ~fs-------pdg~~La~~s~~~d~~I~lwdl~s~-~~~--~~~~~~~~~~~~V~~l~fspdg~~Lasgs 548 (564)
+|. .+|.++++... .+.|..+++... ... ..+.. .....+..+++.|+|.++++..
T Consensus 265 ~~y~g~~fp~~~G~l~v~~~~--~~~v~~~~~~~~g~~~~~~~~~~--~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 265 SFVHGDMFPGLRGWLLIACLR--GSMLAAVNFGDNMEVRKISTFFK--NVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EECCSSSCGGGTTEEEEEETT--TTEEEEEEECGGGCEEEEEEECT--TTSCCEEEEEECTTSCEEEEEC
T ss_pred EEECCCCCcccCCcEEEEEcC--CCEEEEEEECCCCcccceeeecc--CCCCCeeEEEECCCCcEEEEEe
Confidence 884 46766655444 678888888753 221 12211 1246789999999998666654
No 289
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.27 E-value=0.0012 Score=65.79 Aligned_cols=233 Identities=13% Similarity=0.175 Sum_probs=127.4
Q ss_pred CcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCce-eeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 043172 306 DCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKA-DKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKE 384 (564)
Q Consensus 306 ~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~-~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~ 384 (564)
...+.++.|.+.+..++ ++..+.|+. ....++. ..+..........+..+.+.+ +..+ +++..|.|+. ....++
T Consensus 35 ~~~~~~v~~~~~~~~~~-~G~~g~i~~-s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~-~~g~~g~i~~-S~DgG~ 109 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWL-VGVNATLME-TRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGW-IVGEPPIMLH-TTDGGQ 109 (327)
T ss_dssp SSCEEEEEESSSSCEEE-EETTTEEEE-ESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEE-EEEETTEEEE-ESSTTS
T ss_pred CCcEEEEEECCCCcEEE-EcCCCeEEE-eCCCCCCCeECCCCCCCCCccEEEEEecC-CeEE-EEECCCeEEE-ECCCCC
Confidence 34688888887666666 556776533 3444432 222111111223578888886 4444 4556675554 333333
Q ss_pred EEEEee----ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEE
Q 043172 385 LIGTLK----MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVN 460 (564)
Q Consensus 385 ~~~~~~----~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~ 460 (564)
.-..+. +.+.+..+.+.+++..++++ .+|.|+. ....++.-..........+..+++.+++.+++++...+..+
T Consensus 110 tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~ 187 (327)
T 2xbg_A 110 SWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYS 187 (327)
T ss_dssp SCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEE
T ss_pred CceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEE
Confidence 222221 23567888887777655554 4565433 22223332233223333578899999998887775544444
Q ss_pred EEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCC-CCCCCCcEEEEEeC
Q 043172 461 VYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPA-NRNLQYPRCLDFSP 539 (564)
Q Consensus 461 iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~-~~~~~~V~~l~fsp 539 (564)
-.|-. + ...+++.. .....+..+.+.+++++++++. +|.+++.....+......... ......+.++.|.+
T Consensus 188 S~d~g-G--~tW~~~~~--~~~~~~~~~~~~~~g~~~~~~~---~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~ 259 (327)
T 2xbg_A 188 TWEPG-Q--TAWEPHNR--TTSRRLHNMGFTPDGRLWMIVN---GGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRT 259 (327)
T ss_dssp EECTT-C--SSCEEEEC--CSSSCEEEEEECTTSCEEEEET---TTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESS
T ss_pred EeCCC-C--CceeECCC--CCCCccceeEECCCCCEEEEeC---CceEEEecCCCCCeeEeccCCcccCCcceEEEEecC
Confidence 44421 1 12244422 3456788899999998776553 577776643324433322221 11123478999999
Q ss_pred CCCEEEEEcCCCeEE
Q 043172 540 GGGFMAVGNAAGKVF 554 (564)
Q Consensus 540 dg~~Lasgs~dG~V~ 554 (564)
++.+++++. +|.|+
T Consensus 260 ~~~~~~~g~-~g~i~ 273 (327)
T 2xbg_A 260 PNEVWLAGG-AGALL 273 (327)
T ss_dssp SSCEEEEES-TTCEE
T ss_pred CCEEEEEeC-CCeEE
Confidence 888777665 66563
No 290
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.24 E-value=0.00062 Score=67.61 Aligned_cols=229 Identities=11% Similarity=0.000 Sum_probs=138.4
Q ss_pred EEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEE-eCCCeEEEEECCCCcEE-EEee-ecCcEE
Q 043172 320 QAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFV-GNEGYILLVSSKTKELI-GTLK-MNGTVR 396 (564)
Q Consensus 320 ~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~~dg~I~lwd~~t~~~~-~~~~-~~~~V~ 396 (564)
+|+.+. ...|+.+++.+........+.+. .....+.|.+....|+.+ ...+.|..+++..+... ..+. .-....
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~--~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~ 82 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIVVGGL--EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPD 82 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEEEEEE--EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCC
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEEecCC--CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCcc
Confidence 344433 56788999987642111112221 246688999865555555 45688999998766321 1122 224567
Q ss_pred EEEEecCCCEE-EEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEe--CCCcEEEEeCCcccCCcce
Q 043172 397 SLAFADDGKQL-LSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGS--DSGIVNVYNRQEFLGGKRK 473 (564)
Q Consensus 397 ~l~~spdg~~l-~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs--~dg~V~iwd~~~~~~~~~~ 473 (564)
++++.+.+..| ++-...+.|.++++..... ..+..........++++|.+.+|+... ..+.|..+++... .
T Consensus 83 glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~-----~ 156 (318)
T 3sov_A 83 GLACDWLGEKLYWTDSETNRIEVSNLDGSLR-KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS-----S 156 (318)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSC-----S
T ss_pred EEEEEcCCCeEEEEECCCCEEEEEECCCCcE-EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCC-----C
Confidence 89998755444 4445578999999875433 333323333568899998766555554 3578888887642 1
Q ss_pred eeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeE
Q 043172 474 PIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKV 553 (564)
Q Consensus 474 ~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V 553 (564)
....+...-...+.|+|+|++..|+.+... .+.|..+++.......... .......++++.. +.++++-...+.|
T Consensus 157 ~~~~~~~~l~~Pnglavd~~~~~lY~aD~~-~~~I~~~d~dG~~~~~~~~---~~~~~P~glav~~-~~lywtd~~~~~V 231 (318)
T 3sov_A 157 RFIIINSEIYWPNGLTLDYEEQKLYWADAK-LNFIHKSNLDGTNRQAVVK---GSLPHPFALTLFE-DILYWTDWSTHSI 231 (318)
T ss_dssp CEEEECSSCSCEEEEEEETTTTEEEEEETT-TTEEEEEETTSCSCEEEEC---SCCSCEEEEEEET-TEEEEEETTTTEE
T ss_pred eEEEEECCCCCccEEEEeccCCEEEEEECC-CCEEEEEcCCCCceEEEec---CCCCCceEEEEeC-CEEEEEecCCCeE
Confidence 111122223456899999988888777653 6899999986432211111 2235677888864 3445555567788
Q ss_pred EEEEcCCCC
Q 043172 554 FLYKLNHYH 562 (564)
Q Consensus 554 ~lw~l~~~~ 562 (564)
..++..+.+
T Consensus 232 ~~~~~~~G~ 240 (318)
T 3sov_A 232 LACNKYTGE 240 (318)
T ss_dssp EEEETTTCC
T ss_pred EEEECCCCC
Confidence 888875543
No 291
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.24 E-value=0.00037 Score=70.31 Aligned_cols=231 Identities=15% Similarity=0.156 Sum_probs=127.7
Q ss_pred cCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeecccc--ccCCcceEEEEEcCC---CCEEEEEeC-C-----CeE
Q 043172 307 CPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLV--GREEKSLEFFEVSPD---SSVIAFVGN-E-----GYI 375 (564)
Q Consensus 307 ~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~--~~~~~~v~~~~~spd---g~~la~~~~-d-----g~I 375 (564)
.....++|.|+|+ |+++...+.|++++ .+....+..+. .........++|+|+ +..|+++.. . +.|
T Consensus 31 ~~P~~ia~~pdG~-l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGG-MLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSC-EEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCe-EEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 3457899999998 55556679999998 45433222221 111235789999998 555555443 2 678
Q ss_pred EEEECCCCcE-----E-EEeee-c---CcEEEEEEecCCCEEEEEeC-------------CCeEEEEECCCC--------
Q 043172 376 LLVSSKTKEL-----I-GTLKM-N---GTVRSLAFADDGKQLLSSGG-------------DGQVYHWDLRTR-------- 424 (564)
Q Consensus 376 ~lwd~~t~~~-----~-~~~~~-~---~~V~~l~~spdg~~l~s~s~-------------dg~V~lwD~~~~-------- 424 (564)
..|+...+.. + ..+.. . .....++|.|+|.++++.+. .|.|..++....
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~ 187 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFL 187 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTT
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCccc
Confidence 8888765421 1 11221 1 13468999999976655432 256766666430
Q ss_pred ----ceeEEEeecCCcceEEEEECC-CCCEEEEEeCCCc--------EEEEeCCcccC-----------CcceeeEEccc
Q 043172 425 ----TCIHRAVDEGCINGTALCTSP-DGTFFAAGSDSGI--------VNVYNRQEFLG-----------GKRKPIKTIEN 480 (564)
Q Consensus 425 ----~~~~~~~~~~~~~i~~l~~sp-~g~~lasgs~dg~--------V~iwd~~~~~~-----------~~~~~~~~~~~ 480 (564)
.....+.... .....++|+| ++.++++-..... |++........ ....|+..+..
T Consensus 188 ~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~ 266 (352)
T 2ism_A 188 GRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWPQ 266 (352)
T ss_dssp TCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTT
T ss_pred CCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecCC
Confidence 1111222222 2356789999 6665554433332 44433211000 01234445532
Q ss_pred cccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCce------eccCCCCCCCCCCcEEEEEeCCCCEEEEEc
Q 043172 481 LTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNV------FSNWPPANRNLQYPRCLDFSPGGGFMAVGN 548 (564)
Q Consensus 481 ~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~------~~~~~~~~~~~~~V~~l~fspdg~~Lasgs 548 (564)
......++| .+|.++++... .+.|..+++..... ...+. ...+.+..+++.|+|.++++..
T Consensus 267 -~~ap~G~~~-~~G~l~v~~~~--~~~v~~v~~~~~~~~~~~~~~~~~~---~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 267 -GFPPGNLAF-FRGDLYVAGLR--GQALLRLVLEGERGRWRVLRVETAL---SGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp -CCCEEEEEE-ETTEEEEEETT--TTEEEEEEEEEETTEEEEEEEEEEE---ESSCCEEEEEECTTSCEEEEEC
T ss_pred -CCCCcceEE-ECCEEEEEECC--CCEEEEEEECCCCcceeecchheec---ccCCCeeEEEECCCCcEEEEEe
Confidence 345667888 46665554433 67788887754321 11111 1236789999999998766653
No 292
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.20 E-value=0.00028 Score=69.54 Aligned_cols=204 Identities=9% Similarity=0.042 Sum_probs=128.1
Q ss_pred CCeeEEEEcCCCCEEEEEe-CCCcEEEEEecCCCCceeEEEEe----C--CcCeEEEEE---eeCCCEEEEEe-------
Q 043172 263 GPINSVQFHRNAQLLLVAG-LDRRLRFFQIDGKRNTKIQSIFL----E--DCPVRKASF---LPDGSQAIIAG------- 325 (564)
Q Consensus 263 ~~V~~l~fspdg~~l~s~s-~dg~I~lwd~~~~~~~~~~~~~~----~--~~~I~~l~f---spdg~~l~s~~------- 325 (564)
.--.+++|++....|+.++ ..++|..|+..++....+ .+.. . ...+..+.| .|+++.+++..
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF 91 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence 3456789998666666666 689999998864322222 1211 0 113578999 58876666543
Q ss_pred ------CCCeEEEEECC---CCceeeecccccc----------CCcceEEEEEcCCCCEEEEEeCC-CeEEEEECCCCcE
Q 043172 326 ------RRKFFYSLDLV---KAKADKIGPLVGR----------EEKSLEFFEVSPDSSVIAFVGNE-GYILLVSSKTKEL 385 (564)
Q Consensus 326 ------~dg~i~iwdl~---~~~~~~~~~~~~~----------~~~~v~~~~~spdg~~la~~~~d-g~I~lwd~~t~~~ 385 (564)
.+..|..||+. +++......+... ....+..+++.++|+..++++.. +.|..++......
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~ 171 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTV 171 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCE
T ss_pred cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEE
Confidence 25789999999 7765443333211 22247899999999999988888 8888888765433
Q ss_pred EEEeee------cCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCce--eEEEe-ec--CCcceEE-EEECCCCCE-EEE
Q 043172 386 IGTLKM------NGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTC--IHRAV-DE--GCINGTA-LCTSPDGTF-FAA 452 (564)
Q Consensus 386 ~~~~~~------~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~--~~~~~-~~--~~~~i~~-l~~sp~g~~-las 452 (564)
..-+.. ....+.|+++|+|+.|++....|.|..+|+..... +..-. .. ....... +..-.+|+. +++
T Consensus 172 ~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~ 251 (334)
T 2p9w_A 172 STFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVG 251 (334)
T ss_dssp EEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEE
T ss_pred eeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEEE
Confidence 222111 12367999999999999887799999999985433 11110 10 1112233 233346776 455
Q ss_pred EeCCCcEEEEeCCcc
Q 043172 453 GSDSGIVNVYNRQEF 467 (564)
Q Consensus 453 gs~dg~V~iwd~~~~ 467 (564)
.+..+.+.+.+...+
T Consensus 252 ~~~~~~~~l~S~DgW 266 (334)
T 2p9w_A 252 ARAPYAISFRSWDNW 266 (334)
T ss_dssp EETTEEEEEECSSTT
T ss_pred cCCCCEEEEECCCCc
Confidence 555667777776654
No 293
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=98.17 E-value=0.00038 Score=69.96 Aligned_cols=196 Identities=8% Similarity=0.062 Sum_probs=119.0
Q ss_pred CeeEEEEcCCCCEEEEEe------------CCCcEEEEEecCCCCceeEEEE--e-----CCcCeEEEEEee--CCC-EE
Q 043172 264 PINSVQFHRNAQLLLVAG------------LDRRLRFFQIDGKRNTKIQSIF--L-----EDCPVRKASFLP--DGS-QA 321 (564)
Q Consensus 264 ~V~~l~fspdg~~l~s~s------------~dg~I~lwd~~~~~~~~~~~~~--~-----~~~~I~~l~fsp--dg~-~l 321 (564)
..-.+...|+|..+++++ .+|.|.++|.+..... ...+. + .......+.+.+ ++. +|
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~-~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPA-VSELEIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCC-EEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCc-eEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 445666788876555552 6889999998742221 22222 2 224677888776 454 56
Q ss_pred EEEeC---CCeEEEEECCC--CceeeeccccccCCcceEEEEEcCCCCEEEEEe-----------------CCCeEEEEE
Q 043172 322 IIAGR---RKFFYSLDLVK--AKADKIGPLVGREEKSLEFFEVSPDSSVIAFVG-----------------NEGYILLVS 379 (564)
Q Consensus 322 ~s~~~---dg~i~iwdl~~--~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~-----------------~dg~I~lwd 379 (564)
+++.. ...+.+|++.. +....+..+.+..-...+.+.+.++|.+.++.. ..|.|+.++
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d 209 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 209 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence 66542 45677766544 444444455554445788999999998777653 125666666
Q ss_pred CCCCcEEEEeeecCcEEEEEEecCCCEEEEEe-CCCeEEEEECCC-Ccee--EEEeecCCcceEEEEECC-CCCEEEEEe
Q 043172 380 SKTKELIGTLKMNGTVRSLAFADDGKQLLSSG-GDGQVYHWDLRT-RTCI--HRAVDEGCINGTALCTSP-DGTFFAAGS 454 (564)
Q Consensus 380 ~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s-~dg~V~lwD~~~-~~~~--~~~~~~~~~~i~~l~~sp-~g~~lasgs 454 (564)
. ++.......-...+.++|+||++.|+++. ..+.|+.|++.. +... ..+ .. ....-.+++.+ +|++.+++.
T Consensus 210 ~--~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~-~g~PDGi~vD~e~G~lwva~~ 285 (355)
T 3sre_A 210 P--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SF-DTLVDNISVDPVTGDLWVGCH 285 (355)
T ss_dssp T--TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-EC-SSEEEEEEECTTTCCEEEEEE
T ss_pred C--CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eC-CCCCceEEEeCCCCcEEEEec
Confidence 5 33332333445689999999998887775 467999999864 3321 223 22 23456788898 588766554
Q ss_pred CC-CcEEEEeC
Q 043172 455 DS-GIVNVYNR 464 (564)
Q Consensus 455 ~d-g~V~iwd~ 464 (564)
.+ +.|..|+.
T Consensus 286 ~~g~~v~~~~P 296 (355)
T 3sre_A 286 PNGMRIFFYDA 296 (355)
T ss_dssp SCHHHHHSCCT
T ss_pred CCceEEEEECC
Confidence 33 34544543
No 294
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.16 E-value=0.00045 Score=69.66 Aligned_cols=230 Identities=13% Similarity=0.094 Sum_probs=124.5
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEE---eCCcCeEEEEEeeC---CCEEEEEeCC------CeEE
Q 043172 264 PINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIF---LEDCPVRKASFLPD---GSQAIIAGRR------KFFY 331 (564)
Q Consensus 264 ~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~---~~~~~I~~l~fspd---g~~l~s~~~d------g~i~ 331 (564)
...+|+|.|+|.++++ ...+.|.+++ ++ ....+..+. ........++|+|+ +..|+++... ..|.
T Consensus 32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~-~g-~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 32 VPWALAFLPDGGMLIA-ERPGRIRLFR-EG-RLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp CEEEEEECTTSCEEEE-ETTTEEEEEE-TT-EEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CceEEEEcCCCeEEEE-eCCCeEEEEE-CC-CccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 4679999999985555 5669898887 32 222222221 12346789999998 6666665432 6788
Q ss_pred EEECCCCcee---eec-ccc--ccCCcceEEEEEcCCCCEEEEEeC-------------CCeEEEEECCCC---------
Q 043172 332 SLDLVKAKAD---KIG-PLV--GREEKSLEFFEVSPDSSVIAFVGN-------------EGYILLVSSKTK--------- 383 (564)
Q Consensus 332 iwdl~~~~~~---~~~-~~~--~~~~~~v~~~~~spdg~~la~~~~-------------dg~I~lwd~~t~--------- 383 (564)
.|++..+... .+. .+. .........++|.|+|.++++.+. .|.|.-++....
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~ 188 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLG 188 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTT
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccC
Confidence 8887754221 111 122 111112457999999976666432 256777776531
Q ss_pred -----cEEEEeeecCcEEEEEEec-CCCEEEEEeCCCe--------EEEEECCCCc------------------eeEEEe
Q 043172 384 -----ELIGTLKMNGTVRSLAFAD-DGKQLLSSGGDGQ--------VYHWDLRTRT------------------CIHRAV 431 (564)
Q Consensus 384 -----~~~~~~~~~~~V~~l~~sp-dg~~l~s~s~dg~--------V~lwD~~~~~------------------~~~~~~ 431 (564)
..+... .-.....++|+| ++.++++-..... |.+. ..+. .+..+
T Consensus 189 ~~~~~~~i~a~-G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i--~~G~nyGwp~~~g~~~~~~~~~p~~~~- 264 (352)
T 2ism_A 189 RRGARPEVYSL-GHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLI--VPGGNYGWPRVVGRGNDPRYRDPLYFW- 264 (352)
T ss_dssp CTTSCTTEEEE-CCSEECCCEECTTTCCEEEEEECC------CCCEEEEE--CTTCBCCTTTCCSCCCCTTSCCCSEEC-
T ss_pred CCCCCccEEEE-cCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEe--ccCCcCCCCcccCCCCCCCCcCCeEec-
Confidence 111111 123467889999 5665444332222 3332 2221 11122
Q ss_pred ecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCc-ceeeEEccccccceeEEEEcCCCcEEEEEec
Q 043172 432 DEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGK-RKPIKTIENLTTKVDFMKFNNDAQILAICST 502 (564)
Q Consensus 432 ~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~-~~~~~~~~~~~~~I~~l~fspdg~~La~~s~ 502 (564)
........++| .+|.++++....+.|...++....... ......+......+..+++.|||.++++...
T Consensus 265 -~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~~ 334 (352)
T 2ism_A 265 -PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTSN 334 (352)
T ss_dssp -TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEECS
T ss_pred -CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEeC
Confidence 11223456777 466666666666778877776431000 0001122122357889999999977666543
No 295
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.16 E-value=0.0016 Score=68.24 Aligned_cols=241 Identities=10% Similarity=0.050 Sum_probs=138.7
Q ss_pred CeeEEEEcC-CCCEEEEE-eCCCcEEEEEecCCCCceeEEEEeC----CcCeEEEEE-------eeCCCEEEEEeCCC--
Q 043172 264 PINSVQFHR-NAQLLLVA-GLDRRLRFFQIDGKRNTKIQSIFLE----DCPVRKASF-------LPDGSQAIIAGRRK-- 328 (564)
Q Consensus 264 ~V~~l~fsp-dg~~l~s~-s~dg~I~lwd~~~~~~~~~~~~~~~----~~~I~~l~f-------spdg~~l~s~~~dg-- 328 (564)
....|+|+| +...|+.+ ...+.|++.|+... .+..+... ......++| +++|++|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~---~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~ 216 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNR---MLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGK 216 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTT---EEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTT
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCC---EEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCC
Confidence 578999999 34444444 43456666666533 33333222 124789999 99999788776543
Q ss_pred -----eEEEEECCC-Cceee-e--ccccccCCcceEEEEEcCCCC-EEEEEeCCCeEEEEECC-------CCcE------
Q 043172 329 -----FFYSLDLVK-AKADK-I--GPLVGREEKSLEFFEVSPDSS-VIAFVGNEGYILLVSSK-------TKEL------ 385 (564)
Q Consensus 329 -----~i~iwdl~~-~~~~~-~--~~~~~~~~~~v~~~~~spdg~-~la~~~~dg~I~lwd~~-------t~~~------ 385 (564)
.|.+++... +.... . ..+... .....++++|++. ++++-...+.|..+|+. ++..
T Consensus 217 ~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~--~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~ 294 (496)
T 3kya_A 217 GDESPSVYIIKRNADGTFDDRSDIQLIAAY--KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVK 294 (496)
T ss_dssp GGGEEEEEEEECCTTSCCSTTSCEEEEEEE--SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGG
T ss_pred cccCceEEEEecCCCCceeecccceeeccC--CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccc
Confidence 366666443 23210 0 011111 1245788999544 45555567889999987 5543
Q ss_pred -----EEE-ee--ecCcEEEEEEecCCCEEEEE-eCCCeEEEEECC--CCce--eEEEeec-CC-------------cce
Q 043172 386 -----IGT-LK--MNGTVRSLAFADDGKQLLSS-GGDGQVYHWDLR--TRTC--IHRAVDE-GC-------------ING 438 (564)
Q Consensus 386 -----~~~-~~--~~~~V~~l~~spdg~~l~s~-s~dg~V~lwD~~--~~~~--~~~~~~~-~~-------------~~i 438 (564)
... +. .......++|+|+|++|+++ +..+.|+.++.. .+.. ...+... +. ...
T Consensus 295 ~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P 374 (496)
T 3kya_A 295 NNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNP 374 (496)
T ss_dssp GCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSE
T ss_pred ccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCC
Confidence 122 22 23456899999999965555 456789986653 3321 1222221 00 012
Q ss_pred E-EEEEC-------CCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccc------------------------ccccee
Q 043172 439 T-ALCTS-------PDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIEN------------------------LTTKVD 486 (564)
Q Consensus 439 ~-~l~~s-------p~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~------------------------~~~~I~ 486 (564)
. .++.. ++|.++++-+....|+.++... .+.++.+ .-....
T Consensus 375 ~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~G-------~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~ 447 (496)
T 3kya_A 375 CQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEG-------IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVS 447 (496)
T ss_dssp EEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTTC-------BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEE
T ss_pred eEEEEEccccccccCCCeEEEEECCCCEEEEEeCCC-------CEEEEecccccccccCccccccCCCCchhhhhcCCCc
Confidence 3 44554 4566667767788899998432 1222211 112456
Q ss_pred EEEEcCC-CcEEEEEecCCCCeEEEEEcCCCce
Q 043172 487 FMKFNND-AQILAICSTMKKNSLKLIHIPSYNV 518 (564)
Q Consensus 487 ~l~fspd-g~~La~~s~~~d~~I~lwdl~s~~~ 518 (564)
.|++.++ |.++++=+. +..||.+++.....
T Consensus 448 gIavd~~~g~lyVaD~~--N~rIrki~~~~~~~ 478 (496)
T 3kya_A 448 GLVYDDVKEMFYVHDQV--GHTIRTISMEQEEN 478 (496)
T ss_dssp EEEEETTTTEEEEEETT--TTEEEEEEECCCC-
T ss_pred EEEEECCCCEEEEEeCC--CCEEEEEECCCCcc
Confidence 8999997 655544444 78999998865433
No 296
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=98.16 E-value=0.0035 Score=63.59 Aligned_cols=220 Identities=16% Similarity=0.241 Sum_probs=149.8
Q ss_pred CCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeeecCcEEEEEEecCCCE
Q 043172 327 RKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQ 406 (564)
Q Consensus 327 dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~ 406 (564)
...|.|.|+..+......++ ...+.-.+|..+.||.-. ...+.|+|+.+.+.+..+.....|.-=.|-.. +.
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi------~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~-~~ 118 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPI------SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL-NT 118 (494)
T ss_dssp CCEEEEEETTSTTSCEEEEC------CCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEET-TE
T ss_pred CCeEEEEECCCCCcceeccc------ccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCC-Ce
Confidence 34788889887654321122 123566789999888875 68999999999999999887777766666544 45
Q ss_pred EEEEeCCCeEEEEECCCC-ceeEEEeec---CCcceEEEEECCCCCEEEEEe-------CCCcEEEEeCCcccCCcceee
Q 043172 407 LLSSGGDGQVYHWDLRTR-TCIHRAVDE---GCINGTALCTSPDGTFFAAGS-------DSGIVNVYNRQEFLGGKRKPI 475 (564)
Q Consensus 407 l~s~s~dg~V~lwD~~~~-~~~~~~~~~---~~~~i~~l~~sp~g~~lasgs-------~dg~V~iwd~~~~~~~~~~~~ 475 (564)
|+..+ +..|+.|++... .++..|..+ ....|.....+++.+|++..+ -.|.+.+|.... +.-
T Consensus 119 l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er------~~s 191 (494)
T 1bpo_A 119 VALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR------KVS 191 (494)
T ss_dssp EEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT------CCE
T ss_pred EEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc------ccc
Confidence 55554 468999999753 444444443 234677788899999887543 247889999887 566
Q ss_pred EEccccccceeEEEEcCC---CcEEEEEecCC-CCeEEEEEcCCC---c-ee-----c-cCCCCCCCCCCcEEEEEeCCC
Q 043172 476 KTIENLTTKVDFMKFNND---AQILAICSTMK-KNSLKLIHIPSY---N-VF-----S-NWPPANRNLQYPRCLDFSPGG 541 (564)
Q Consensus 476 ~~~~~~~~~I~~l~fspd---g~~La~~s~~~-d~~I~lwdl~s~---~-~~-----~-~~~~~~~~~~~V~~l~fspdg 541 (564)
..+.+|......+.+..+ .++++.+.... .+.++|.++... . .+ . .+|. .......-++..|+.-
T Consensus 192 Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fpp-e~~~DFPvamqvs~ky 270 (494)
T 1bpo_A 192 QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPP-EAQNDFPVAMQISEKH 270 (494)
T ss_dssp EEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCT-TSTTCCEEEEEEETTT
T ss_pred chheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCc-ccccCceeEEEecccC
Confidence 677888766655544322 23555555421 268999998542 1 11 1 1222 2334667899999999
Q ss_pred CEEEEEcCCCeEEEEEcCCCC
Q 043172 542 GFMAVGNAAGKVFLYKLNHYH 562 (564)
Q Consensus 542 ~~Lasgs~dG~V~lw~l~~~~ 562 (564)
..++.-+.-|.|++||+.+..
T Consensus 271 gviyviTK~G~i~lyDleTgt 291 (494)
T 1bpo_A 271 DVVFLITKYGYIHLYDLETGT 291 (494)
T ss_dssp TEEEEEETTSEEEEEETTTCC
T ss_pred CEEEEEecCceEEEEecccce
Confidence 999999999999999998764
No 297
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=98.13 E-value=0.0015 Score=65.87 Aligned_cols=244 Identities=15% Similarity=0.161 Sum_probs=131.0
Q ss_pred CeEEEEEeeCCCEEEEEeCCCeEEEEECCCCcee-eeccc---cccCCcceEEEEEcCC---CCEEEEEeC--------C
Q 043172 308 PVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKAD-KIGPL---VGREEKSLEFFEVSPD---SSVIAFVGN--------E 372 (564)
Q Consensus 308 ~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~-~~~~~---~~~~~~~v~~~~~spd---g~~la~~~~--------d 372 (564)
....|+|.|+|++|+++...+.|++++.. +... .+..+ ..........++|+|+ +..|+++.. .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 45789999999845566678999999854 3321 11111 1112235788999996 455554432 2
Q ss_pred CeEEEEECCCC--cE--EEE-ee-e------cCcEEEEEEecCCCEEEEEeC-------------CCeEEEEECCCCc--
Q 043172 373 GYILLVSSKTK--EL--IGT-LK-M------NGTVRSLAFADDGKQLLSSGG-------------DGQVYHWDLRTRT-- 425 (564)
Q Consensus 373 g~I~lwd~~t~--~~--~~~-~~-~------~~~V~~l~~spdg~~l~s~s~-------------dg~V~lwD~~~~~-- 425 (564)
..|..|++... .. ... +. . ......|+|.|+|.++++.+. .|.|.-++....-
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~ 177 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPD 177 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCT
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCC
Confidence 35666766432 11 111 11 1 112467999999965555433 2467777765320
Q ss_pred ----------eeEEEeecCCcceEEEEECC-CCCEEEEEeC-CC--cEEEEeCCccc-----------------------
Q 043172 426 ----------CIHRAVDEGCINGTALCTSP-DGTFFAAGSD-SG--IVNVYNRQEFL----------------------- 468 (564)
Q Consensus 426 ----------~~~~~~~~~~~~i~~l~~sp-~g~~lasgs~-dg--~V~iwd~~~~~----------------------- 468 (564)
....+.... .....++|+| +|+++++-.. ++ .|++.......
T Consensus 178 ~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~ 256 (353)
T 2g8s_A 178 DNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEI 256 (353)
T ss_dssp TCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSS
T ss_pred CCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCC
Confidence 112222222 2467899999 5654443221 11 23322110000
Q ss_pred -CCcceeeEEccccccceeEEEEcC-------CCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCC
Q 043172 469 -GGKRKPIKTIENLTTKVDFMKFNN-------DAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPG 540 (564)
Q Consensus 469 -~~~~~~~~~~~~~~~~I~~l~fsp-------dg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspd 540 (564)
.....|+..+.. ...+..++|.. +|.++++... .+.|..+++..+...............+..+++.|+
T Consensus 257 ~~~~~~P~~~~~~-~~ap~G~~~y~g~~fp~~~g~l~v~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pd 333 (353)
T 2g8s_A 257 VAGTEQPVFYWKD-SPAVSGMAFYNSDKFPQWQQKLFIGALK--DKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPD 333 (353)
T ss_dssp CTTSCCCSEEESS-CCCEEEEEEECCSSSGGGTTEEEEEETT--TTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTT
T ss_pred CCCccCCeEEeCC-CcCcceeEEECCccCcccCCcEEEEEcc--CCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCC
Confidence 001123333332 34567788864 4666655444 688888888765433221111122357999999999
Q ss_pred CCEEEEEc-CCCeEEEEEc
Q 043172 541 GGFMAVGN-AAGKVFLYKL 558 (564)
Q Consensus 541 g~~Lasgs-~dG~V~lw~l 558 (564)
|.++++.. .+| +||+|
T Consensus 334 G~lyv~td~~~g--~I~ri 350 (353)
T 2g8s_A 334 GYLYVLTDESSG--ELLKV 350 (353)
T ss_dssp SCEEEEECSTTE--EEEEE
T ss_pred CcEEEEEeCCCC--EEEEE
Confidence 98666533 345 45655
No 298
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.12 E-value=0.0013 Score=64.77 Aligned_cols=207 Identities=6% Similarity=-0.004 Sum_probs=133.9
Q ss_pred EEeCCcCeEEEEEeeCCCEEEEEe-CCCeEEEEECCCCceeeeccccc-----cCCcceEEEEE---cCCCCEEEEEeC-
Q 043172 302 IFLEDCPVRKASFLPDGSQAIIAG-RRKFFYSLDLVKAKADKIGPLVG-----REEKSLEFFEV---SPDSSVIAFVGN- 371 (564)
Q Consensus 302 ~~~~~~~I~~l~fspdg~~l~s~~-~dg~i~iwdl~~~~~~~~~~~~~-----~~~~~v~~~~~---spdg~~la~~~~- 371 (564)
++....-..+++|.+....++.++ ..+.|..|+...+....+ .+.+ .....+..+.| .|+++++++...
T Consensus 8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~ 86 (334)
T 2p9w_A 8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNA 86 (334)
T ss_dssp ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEET
T ss_pred ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEccc
Confidence 344445556889998666777776 789999999987655444 3332 22234689999 688877775432
Q ss_pred ------------CCeEEEEECC---CCcEEEEeee----c----------CcEEEEEEecCCCEEEEEeCC-CeEEEEEC
Q 043172 372 ------------EGYILLVSSK---TKELIGTLKM----N----------GTVRSLAFADDGKQLLSSGGD-GQVYHWDL 421 (564)
Q Consensus 372 ------------dg~I~lwd~~---t~~~~~~~~~----~----------~~V~~l~~spdg~~l~s~s~d-g~V~lwD~ 421 (564)
+..|..+|+. +++.+..... . ..+.+++..++|+..++++.. +.|..++.
T Consensus 87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~p 166 (334)
T 2p9w_A 87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSA 166 (334)
T ss_dssp TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECT
T ss_pred ccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeC
Confidence 5789999999 7877655541 1 258899999999999988888 88888887
Q ss_pred CCCceeEEEeec-----CCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEcc-c---cccceeE-EEEc
Q 043172 422 RTRTCIHRAVDE-----GCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIE-N---LTTKVDF-MKFN 491 (564)
Q Consensus 422 ~~~~~~~~~~~~-----~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~-~---~~~~I~~-l~fs 491 (564)
... .+..+... .....+.|+++|+|+.|++....|.+..+|+... ...++..-. + .-..... +.--
T Consensus 167 dG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p---v~~~v~~~~~G~~~~~~~~dgilp~~ 242 (334)
T 2p9w_A 167 DGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP---YAWPEPVKINGDFGTLSGTEKIVTVP 242 (334)
T ss_dssp TSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS---SCCCEECEESSCCCCCTTEEEEEEEE
T ss_pred CCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC---cceeecccccCCcccccCcccccccc
Confidence 644 33333211 1224578999999998888877999999998842 110121110 1 1112233 3333
Q ss_pred CCCcEEEEEecCCCCeEEEEEcC
Q 043172 492 NDAQILAICSTMKKNSLKLIHIP 514 (564)
Q Consensus 492 pdg~~La~~s~~~d~~I~lwdl~ 514 (564)
.+|+.|+++... .+.+.+.+..
T Consensus 243 ~~G~vllV~~~~-~~~~~l~S~D 264 (334)
T 2p9w_A 243 VGNESVLVGARA-PYAISFRSWD 264 (334)
T ss_dssp ETTEEEEEEEET-TEEEEEECSS
T ss_pred cCCEEEEEEcCC-CCEEEEECCC
Confidence 578886665542 4555555543
No 299
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.11 E-value=0.0037 Score=69.75 Aligned_cols=231 Identities=10% Similarity=0.005 Sum_probs=135.7
Q ss_pred EEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEe-CCCeEEEEECCCCcee-eeccccccCCcc
Q 043172 276 LLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAG-RRKFFYSLDLVKAKAD-KIGPLVGREEKS 353 (564)
Q Consensus 276 ~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~-~dg~i~iwdl~~~~~~-~~~~~~~~~~~~ 353 (564)
+|+.+. ...|+..++.... ...+......+..++|.+....|+.+. ..+.|+.+++...... ....+.......
T Consensus 397 ~Ll~an-~~~Ir~i~l~~~~---~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~ 472 (791)
T 3m0c_C 397 YLFFTN-RHEVRKMTLDRSE---YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQA 472 (791)
T ss_dssp EEEEEC-BSSEEEECTTSCC---CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSC
T ss_pred cccccc-ccceeEeeccCCc---ceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCC
Confidence 444443 4567777776432 222333445678999998666776665 5678999998753210 001111111224
Q ss_pred eEEEEEcCCCCEEEEEe-CCCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEeC--CCeEEEEECCCCceeEE
Q 043172 354 LEFFEVSPDSSVIAFVG-NEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGG--DGQVYHWDLRTRTCIHR 429 (564)
Q Consensus 354 v~~~~~spdg~~la~~~-~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~--dg~V~lwD~~~~~~~~~ 429 (564)
...+++.+.++.|+.+. ..+.|.+.++........+. .-....+|++.|.+..|+.+.. .+.|...++.... ...
T Consensus 473 P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~-~~~ 551 (791)
T 3m0c_C 473 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYS 551 (791)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEE
T ss_pred cceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc-eEE
Confidence 66899998876666554 56899999987655443333 3346899999997666666543 3689999987443 334
Q ss_pred EeecCCcceEEEEECCCCCEEEEE-eCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeE
Q 043172 430 AVDEGCINGTALCTSPDGTFFAAG-SDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSL 508 (564)
Q Consensus 430 ~~~~~~~~i~~l~~sp~g~~lasg-s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I 508 (564)
+....-.....|++++.+..|+.+ ...+.|.++++... ....+............|++. +..|+.+... .+.|
T Consensus 552 lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~---~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~-~~~I 625 (791)
T 3m0c_C 552 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG---NRKTILEDEKRLAHPFSLAVF--EDKVFWTDII-NEAI 625 (791)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---SCEEEEECTTTTSSEEEEEEE--TTEEEEEETT-TTEE
T ss_pred EEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCC---ceEEEecCCCccCCCCEEEEe--CCEEEEEECC-CCEE
Confidence 443333456889999776655555 45678999998653 112221111112233456653 4456655543 6788
Q ss_pred EEEEcCCCc
Q 043172 509 KLIHIPSYN 517 (564)
Q Consensus 509 ~lwdl~s~~ 517 (564)
...+..++.
T Consensus 626 ~~~dk~tG~ 634 (791)
T 3m0c_C 626 FSANRLTGS 634 (791)
T ss_dssp EEEETTTCC
T ss_pred EEEeCCCCc
Confidence 888866554
No 300
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.09 E-value=0.0008 Score=66.86 Aligned_cols=196 Identities=12% Similarity=0.184 Sum_probs=125.4
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCC----CCE--EEEEe-C---CCeEEEEEC--CCCc
Q 043172 317 DGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPD----SSV--IAFVG-N---EGYILLVSS--KTKE 384 (564)
Q Consensus 317 dg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spd----g~~--la~~~-~---dg~I~lwd~--~t~~ 384 (564)
....++.....+-+.+||+ +|+..+. +.. ..++.+.+.|+ |+. +++++ . ++.|.+|++ .++.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~--~~~---g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~ 112 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHS--YNT---GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT 112 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEE--ECC---SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEE--ccC---CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc
Confidence 4456666667788999999 5665443 322 23566666652 222 33333 3 478999966 4444
Q ss_pred EEEEee-------ec-CcEEEEEE--ecC-CC-EEEEEeCCCeEEEEECC-------CCceeEEEeecCCcceEEEEECC
Q 043172 385 LIGTLK-------MN-GTVRSLAF--ADD-GK-QLLSSGGDGQVYHWDLR-------TRTCIHRAVDEGCINGTALCTSP 445 (564)
Q Consensus 385 ~~~~~~-------~~-~~V~~l~~--spd-g~-~l~s~s~dg~V~lwD~~-------~~~~~~~~~~~~~~~i~~l~~sp 445 (564)
+..+. .. ..+..+|+ +|. +. ++++...+|.+..|++. +.+.++++...+ .+-.|++.+
T Consensus 113 -l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgs--q~EgcvvDd 189 (355)
T 3amr_A 113 -LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNS--QTEGMAADD 189 (355)
T ss_dssp -EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSS--CEEEEEEET
T ss_pred -eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCC--CcceEEEcC
Confidence 43331 11 45677888 664 43 67888889999999983 335566666544 467788888
Q ss_pred CCCEEEEEeCCCcEEEEeCCcccCCcceeeEEcc--ccccceeEEEE--cCCCc-EEEEEecCCCCeEEEEEcC-CCcee
Q 043172 446 DGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIE--NLTTKVDFMKF--NNDAQ-ILAICSTMKKNSLKLIHIP-SYNVF 519 (564)
Q Consensus 446 ~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~--~~~~~I~~l~f--spdg~-~La~~s~~~d~~I~lwdl~-s~~~~ 519 (564)
...+|+++-++.-|..|+.........+.+..+. .....+..|++ .++++ +|++++.. ++++.+|+.. +.+.+
T Consensus 190 ~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG-~~s~~Vydr~~~~~~v 268 (355)
T 3amr_A 190 EYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQG-NSSYAIYDRQGKNKYV 268 (355)
T ss_dssp TTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGG-GTEEEEEESSTTCCEE
T ss_pred CCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCC-CCEEEEEECCCCCcEE
Confidence 8889999999866767775532112335555542 23357888888 45666 77777754 7899999996 56665
Q ss_pred ccC
Q 043172 520 SNW 522 (564)
Q Consensus 520 ~~~ 522 (564)
..+
T Consensus 269 g~f 271 (355)
T 3amr_A 269 ADF 271 (355)
T ss_dssp EEE
T ss_pred EEE
Confidence 555
No 301
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.08 E-value=0.0027 Score=70.87 Aligned_cols=227 Identities=10% Similarity=-0.026 Sum_probs=136.0
Q ss_pred EEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEe-CCCeEEEEECCCC----cEEEEee-ecC
Q 043172 320 QAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVG-NEGYILLVSSKTK----ELIGTLK-MNG 393 (564)
Q Consensus 320 ~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~-~dg~I~lwd~~t~----~~~~~~~-~~~ 393 (564)
+|+.+ ....|+..++.......+. .+. ..+..++|.+....|+.+. ..+.|+.+++... .....+. ...
T Consensus 397 ~Ll~a-n~~~Ir~i~l~~~~~~~l~--~~~--~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~ 471 (791)
T 3m0c_C 397 YLFFT-NRHEVRKMTLDRSEYTSLI--PNL--RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ 471 (791)
T ss_dssp EEEEE-CBSSEEEECTTSCCCEEEE--CSC--SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCS
T ss_pred ccccc-cccceeEeeccCCcceeee--cCC--CceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCC
Confidence 44443 3456888888766543332 221 2577899998666555544 4678999988753 2222232 334
Q ss_pred cEEEEEEecCCCEEEEE-eCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEe-C-CCcEEEEeCCcccCC
Q 043172 394 TVRSLAFADDGKQLLSS-GGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGS-D-SGIVNVYNRQEFLGG 470 (564)
Q Consensus 394 ~V~~l~~spdg~~l~s~-s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs-~-dg~V~iwd~~~~~~~ 470 (564)
.+..|++.+.++.|+.+ ...+.|.+.++.... ...+..........|+++|.+.+|+... . .+.|.+.++...
T Consensus 472 ~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~-~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~--- 547 (791)
T 3m0c_C 472 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV--- 547 (791)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSSS-EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---
T ss_pred CcceeeeeecCCcEEEEecCCCeEEEEeCCCCe-EEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC---
Confidence 67789999877655555 457899999997544 3344433334568999999766555543 2 368888888753
Q ss_pred cceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEE-cC
Q 043172 471 KRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVG-NA 549 (564)
Q Consensus 471 ~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasg-s~ 549 (564)
.....+.........|++.+.+..|+.+... .+.|..+++......... ..........+|++.. .+|+.+ ..
T Consensus 548 --~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~-~~~I~~~d~dG~~~~~v~-~~~~~l~~P~glav~~--~~lYwtD~~ 621 (791)
T 3m0c_C 548 --DIYSLVTENIQWPNGITLDLLSGRLYWVDSK-LHSISSIDVNGGNRKTIL-EDEKRLAHPFSLAVFE--DKVFWTDII 621 (791)
T ss_dssp --CEEEEECSSCSCEEEEEEETTTTEEEEEETT-TTEEEEEETTSCSCEEEE-ECTTTTSSEEEEEEET--TEEEEEETT
T ss_pred --ceEEEEeCCCCCceEEEEecCCCeEEEEeCC-CCcEEEEecCCCceEEEe-cCCCccCCCCEEEEeC--CEEEEEECC
Confidence 2222233334578899999888888877653 678999998644332221 1111223455677643 345444 45
Q ss_pred CCeEEEEEcCCC
Q 043172 550 AGKVFLYKLNHY 561 (564)
Q Consensus 550 dG~V~lw~l~~~ 561 (564)
.+.|...+..+.
T Consensus 622 ~~~I~~~dk~tG 633 (791)
T 3m0c_C 622 NEAIFSANRLTG 633 (791)
T ss_dssp TTEEEEEETTTC
T ss_pred CCEEEEEeCCCC
Confidence 566776664443
No 302
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=98.07 E-value=0.0015 Score=65.97 Aligned_cols=232 Identities=14% Similarity=0.096 Sum_probs=127.6
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEE---eCCcCeEEEEEeeC---CCEEEEEeC----C----C
Q 043172 263 GPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIF---LEDCPVRKASFLPD---GSQAIIAGR----R----K 328 (564)
Q Consensus 263 ~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~---~~~~~I~~l~fspd---g~~l~s~~~----d----g 328 (564)
....+|+|.|+|.++++ ...+.|++++.++ . ..+..+. ........++|+|+ +..|+++.. + .
T Consensus 29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d~~G-~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVT-ERPGRLVLISPSG-K-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp SCEEEEEEEETTEEEEE-ETTTEEEEECSSC-E-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCeEEEEcCCCeEEEE-eCCCEEEEEeCCC-c-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 35789999999985554 5669898886432 2 2222221 12345789999997 556665543 2 5
Q ss_pred eEEEEECCCC--ce---eee-ccccccCCcceEEEEEcCCCCEEEEEeC-------------CCeEEEEECCCC------
Q 043172 329 FFYSLDLVKA--KA---DKI-GPLVGREEKSLEFFEVSPDSSVIAFVGN-------------EGYILLVSSKTK------ 383 (564)
Q Consensus 329 ~i~iwdl~~~--~~---~~~-~~~~~~~~~~v~~~~~spdg~~la~~~~-------------dg~I~lwd~~t~------ 383 (564)
.|..|++... .. ..+ ..+..........++|.|+|.++++.+. .|.|..++....
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 6888887654 11 111 1122111112457999999987666443 256777765432
Q ss_pred ---cEEEEeeecCcEEEEEEec-CCCEEEEEeCCC---eEEEEECCC--------C--------ceeEEEeecCCcceEE
Q 043172 384 ---ELIGTLKMNGTVRSLAFAD-DGKQLLSSGGDG---QVYHWDLRT--------R--------TCIHRAVDEGCINGTA 440 (564)
Q Consensus 384 ---~~~~~~~~~~~V~~l~~sp-dg~~l~s~s~dg---~V~lwD~~~--------~--------~~~~~~~~~~~~~i~~ 440 (564)
..+....+ .....++|+| ++.++++-.... .|.+..... + ..+..+. ........
T Consensus 186 f~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~-~~~~ap~G 263 (354)
T 3a9g_A 186 FPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTG-SETWAPSG 263 (354)
T ss_dssp STTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT-TCCCCEEE
T ss_pred CCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecC-CCCcCCcc
Confidence 11222112 3456899999 566444432221 244332110 0 1122221 12234677
Q ss_pred EEEC-------CCCCEEEEEeCCCcEEEEeCCcccCCcceeeEE-ccccccceeEEEEcCCCcEEEEEe
Q 043172 441 LCTS-------PDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKT-IENLTTKVDFMKFNNDAQILAICS 501 (564)
Q Consensus 441 l~~s-------p~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~-~~~~~~~I~~l~fspdg~~La~~s 501 (564)
++|. .+|.++++....+.|...++... ........ +......+..|++.|||.++++..
T Consensus 264 ~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~--g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 264 ASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDN--MEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EEECCSSSCGGGTTEEEEEETTTTEEEEEEECGG--GCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred eEEECCCCCcccCCcEEEEEcCCCEEEEEEECCC--CcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 8883 46767776667778888888753 11111122 223345788999999997666543
No 303
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.03 E-value=0.02 Score=62.16 Aligned_cols=200 Identities=9% Similarity=-0.046 Sum_probs=120.1
Q ss_pred CCCeeEEEEcCCCCEEEEEe-CCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEe-CCCeEEEEECCCCc
Q 043172 262 TGPINSVQFHRNAQLLLVAG-LDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAG-RRKFFYSLDLVKAK 339 (564)
Q Consensus 262 ~~~V~~l~fspdg~~l~s~s-~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~-~dg~i~iwdl~~~~ 339 (564)
-..+..|+|++.+..|+.+. ..+.|..+++++... ....+...-.....+++.+.+..|+.+. ..+.|.+.++....
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~-~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~ 117 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES-VQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL 117 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCc-eEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCC
Confidence 34678999999776666554 467888888875421 1222222225678999999777676664 56899999998654
Q ss_pred eeeeccccccCCcceEEEEEcCCCCEEEEEeC--CCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEe-CCCe
Q 043172 340 ADKIGPLVGREEKSLEFFEVSPDSSVIAFVGN--EGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSG-GDGQ 415 (564)
Q Consensus 340 ~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~--dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s-~dg~ 415 (564)
...+.. . .......+++.|.+.+|+.+.. .+.|...++.......... .-.....|++.+++..|+.+. ..+.
T Consensus 118 ~~~l~~--~-~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~ 194 (619)
T 3s94_A 118 RKVLFW--Q-ELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNF 194 (619)
T ss_dssp CEEEEC--S-SCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCC
T ss_pred EEEEEe--C-CCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCe
Confidence 322211 1 1123567999998777766653 4678888876443333332 334678999999776666664 4578
Q ss_pred EEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcc
Q 043172 416 VYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEF 467 (564)
Q Consensus 416 V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~ 467 (564)
|..+|+..... ..+..........|++..+ ..+++-...+.|...|..++
T Consensus 195 I~~~~~dG~~~-~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg 244 (619)
T 3s94_A 195 IHKSNLDGTNR-QAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTG 244 (619)
T ss_dssp EEEESSSCCEE-C---------CCCEEESSS-EEEEECTTTCSEEEEESSSC
T ss_pred EEEecCCCCcc-EEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCC
Confidence 99998865332 2222211112245666655 44445556778888887654
No 304
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=98.02 E-value=0.00073 Score=66.33 Aligned_cols=232 Identities=13% Similarity=0.079 Sum_probs=125.7
Q ss_pred CCEEEEEeCC--CcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCC----CeEEEEECCCCceeeecccc
Q 043172 274 AQLLLVAGLD--RRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRR----KFFYSLDLVKAKADKIGPLV 347 (564)
Q Consensus 274 g~~l~s~s~d--g~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~d----g~i~iwdl~~~~~~~~~~~~ 347 (564)
+.+++.||.+ ..+.+||....+...+..+.........+ .-++..++.||.+ ..+.+||+.+.+...+..++
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p 89 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACV--FWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP 89 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEE--EETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEE--EECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence 3456667653 56778877654333332222222222222 2356666677644 67899999998876665544
Q ss_pred ccCCcceEEEEEcCCCCEEEEEeCC------CeEEEEECCCCcEEEEeeecC--cEEEEEEecCCCEEEEEeC-------
Q 043172 348 GREEKSLEFFEVSPDSSVIAFVGNE------GYILLVSSKTKELIGTLKMNG--TVRSLAFADDGKQLLSSGG------- 412 (564)
Q Consensus 348 ~~~~~~v~~~~~spdg~~la~~~~d------g~I~lwd~~t~~~~~~~~~~~--~V~~l~~spdg~~l~s~s~------- 412 (564)
.... ....+.+ ++.++++|+.+ ..+.+||+.+.++...-.... .-.+++. -++++++.|+.
T Consensus 90 ~~r~-~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~ 165 (306)
T 3ii7_A 90 TPRD-SLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSG 165 (306)
T ss_dssp SCCB-SCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTC
T ss_pred cccc-ceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCcc
Confidence 3222 1222222 67777777764 469999999988765433211 1112222 25666666653
Q ss_pred --CCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCC-----CcEEEEeCCcccCCcceeeEEccccccce
Q 043172 413 --DGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDS-----GIVNVYNRQEFLGGKRKPIKTIENLTTKV 485 (564)
Q Consensus 413 --dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~d-----g~V~iwd~~~~~~~~~~~~~~~~~~~~~I 485 (564)
-..+.+||+.+.+-...-.........+++.. ++++++.|+.+ ..+.+||+.+. ....+..+.......
T Consensus 166 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~---~W~~~~~~p~~r~~~ 241 (306)
T 3ii7_A 166 RVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLN---EWKMVSPMPWKGVTV 241 (306)
T ss_dssp EECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTT---EEEECCCCSCCBSCC
T ss_pred cccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCC---cEEECCCCCCCccce
Confidence 34589999988754332111111111222222 66677777643 36889998763 223333332222222
Q ss_pred eEEEEcCCCcEEEEEecCC---CCeEEEEEcCCCc
Q 043172 486 DFMKFNNDAQILAICSTMK---KNSLKLIHIPSYN 517 (564)
Q Consensus 486 ~~l~fspdg~~La~~s~~~---d~~I~lwdl~s~~ 517 (564)
..+.+ ++.++++|+... -+.+.+||+.+.+
T Consensus 242 ~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 242 KCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp EEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred eEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 33333 677777777421 2578889987754
No 305
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.99 E-value=0.00074 Score=66.09 Aligned_cols=232 Identities=14% Similarity=0.060 Sum_probs=123.9
Q ss_pred CCCEEEEEe-CC-----CcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCC-----CeEEEEECCCCc--
Q 043172 273 NAQLLLVAG-LD-----RRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRR-----KFFYSLDLVKAK-- 339 (564)
Q Consensus 273 dg~~l~s~s-~d-----g~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~d-----g~i~iwdl~~~~-- 339 (564)
++.+++.|| .+ ..+.+||+.......+..+..... ...+...++..++.|+.+ ..+.+||+.+..
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~--~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~ 91 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRR--YVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDG 91 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCB--SCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhc--cccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence 455677776 32 367778776443222222221111 122223356666677644 469999999887
Q ss_pred -eeeeccccccCCcceEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCcEEEEeeecC-c-EEEEEEecCCCEEEEEe
Q 043172 340 -ADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNE-----GYILLVSSKTKELIGTLKMNG-T-VRSLAFADDGKQLLSSG 411 (564)
Q Consensus 340 -~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-----g~I~lwd~~t~~~~~~~~~~~-~-V~~l~~spdg~~l~s~s 411 (564)
...+..+..... ....+.+ ++.++++|+.+ ..+.+||+.+.++...-.... . -.+++. -++++++.|+
T Consensus 92 ~W~~~~~~p~~r~-~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG 167 (301)
T 2vpj_A 92 VWYSVAPMNVRRG-LAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV-ASGVIYCLGG 167 (301)
T ss_dssp CCEEECCCSSCCB-SCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE-ETTEEEEECC
T ss_pred eeEECCCCCCCcc-ceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE-ECCEEEEECC
Confidence 665544443222 1222222 57777777653 468999999888765433211 1 112222 2677777776
Q ss_pred CC-----CeEEEEECCCCceeEEEeecC-CcceEEEEECCCCCEEEEEeCC-----CcEEEEeCCcccCCcceeeEEccc
Q 043172 412 GD-----GQVYHWDLRTRTCIHRAVDEG-CINGTALCTSPDGTFFAAGSDS-----GIVNVYNRQEFLGGKRKPIKTIEN 480 (564)
Q Consensus 412 ~d-----g~V~lwD~~~~~~~~~~~~~~-~~~i~~l~~sp~g~~lasgs~d-----g~V~iwd~~~~~~~~~~~~~~~~~ 480 (564)
.+ ..+.+||+.+.+-...-.... ......+.+ ++.+++.|+.+ ..|.+||+.+. ....+..+..
T Consensus 168 ~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~---~W~~~~~~p~ 242 (301)
T 2vpj_A 168 YDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTD---SWTTVTSMTT 242 (301)
T ss_dssp BCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTT---EEEEECCCSS
T ss_pred CCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCC---cEEECCCCCC
Confidence 54 468999998775433211111 111122222 56777777654 46899998763 2233322222
Q ss_pred cccceeEEEEcCCCcEEEEEecCCC---CeEEEEEcCCCc
Q 043172 481 LTTKVDFMKFNNDAQILAICSTMKK---NSLKLIHIPSYN 517 (564)
Q Consensus 481 ~~~~I~~l~fspdg~~La~~s~~~d---~~I~lwdl~s~~ 517 (564)
.......+. -+++++++|+.... +.|.+||+.+.+
T Consensus 243 ~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 243 PRCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp CCBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred cccceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 122222222 26777777765222 457788876643
No 306
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=97.95 E-value=0.0039 Score=65.00 Aligned_cols=233 Identities=14% Similarity=0.116 Sum_probs=139.2
Q ss_pred EEEEEeCCCcEEEEEecCCCCceeEEEEe-------------------------CCcCeE--EEEEe---eCCCEEEEEe
Q 043172 276 LLLVAGLDRRLRFFQIDGKRNTKIQSIFL-------------------------EDCPVR--KASFL---PDGSQAIIAG 325 (564)
Q Consensus 276 ~l~s~s~dg~I~lwd~~~~~~~~~~~~~~-------------------------~~~~I~--~l~fs---pdg~~l~s~~ 325 (564)
.+.|||..|.|+|+-+.+. ..+..+.. ..+-.+ .+++. -||++|+.-.
T Consensus 72 ~f~SgG~sG~v~v~G~PSm--R~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNd 149 (638)
T 3sbq_A 72 GFWSGGHQGEVRVLGVPSM--RELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFIND 149 (638)
T ss_dssp EEEECGGGCCEEEEEETTT--EEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEE
T ss_pred EEeecCcCceEEEEecCCc--ceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEec
Confidence 4678888999999987633 23333321 011122 34443 3678888877
Q ss_pred -CCCeEEEEECCCCceeeeccccccCCcceEEEEEc--CCCCEEEEEeCC-------CeE------------EEEECCCC
Q 043172 326 -RRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVS--PDSSVIAFVGNE-------GYI------------LLVSSKTK 383 (564)
Q Consensus 326 -~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~s--pdg~~la~~~~d-------g~I------------~lwd~~t~ 383 (564)
.+..|...++..-++.++..++... .+.++.|. |+..|++.++.. |.. ...|..+.
T Consensus 150 kan~RvAri~l~~~~~d~Ii~iPn~~--~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm 227 (638)
T 3sbq_A 150 KANSRVARIRLDIMKCDKMITVPNVQ--AIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETM 227 (638)
T ss_dssp TTTTEEEEEETTTTEEEEEEECTTCS--CEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTC
T ss_pred CCCcceEEEECCcEeeceeEeCCCCc--CcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCcc
Confidence 5678999999999888887776554 47888886 688888877652 221 12344455
Q ss_pred cEEEEeeecCcEEEEEEecCCCEEEEEeCC---------------------------------------C-eEEEEECCC
Q 043172 384 ELIGTLKMNGTVRSLAFADDGKQLLSSGGD---------------------------------------G-QVYHWDLRT 423 (564)
Q Consensus 384 ~~~~~~~~~~~V~~l~~spdg~~l~s~s~d---------------------------------------g-~V~lwD~~~ 423 (564)
+...++...+....+...++|.+.++.+.+ | .|.+.|.+.
T Consensus 228 ~v~~Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~ 307 (638)
T 3sbq_A 228 EMAFQVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRK 307 (638)
T ss_dssp SEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSC
T ss_pred EEEEEEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcccc
Confidence 544444444444455566777777666521 1 344555544
Q ss_pred ----CceeEEEeecCCcceEEEEECCCCCEEEEEe-CCCcEEEEeCCccc---C----CcceeeEEccccccceeEEEEc
Q 043172 424 ----RTCIHRAVDEGCINGTALCTSPDGTFFAAGS-DSGIVNVYNRQEFL---G----GKRKPIKTIENLTTKVDFMKFN 491 (564)
Q Consensus 424 ----~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs-~dg~V~iwd~~~~~---~----~~~~~~~~~~~~~~~I~~l~fs 491 (564)
+..+..+.... .....+.++|+|+++++++ -+.+|.|+++.... . .....+..-....-...+.+|.
T Consensus 308 ~~~~~~~~~~~iP~p-ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd 386 (638)
T 3sbq_A 308 KDGKDSKFTRYVPVP-KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFD 386 (638)
T ss_dssp BTTBCCSSEEEEEES-SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEEC
T ss_pred ccccCCceEEEEeCC-CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEEC
Confidence 22222222111 1234677899999888766 47899999998531 0 0011112222245567889999
Q ss_pred CCCcEEEEEecCCCCeEEEEEcCC
Q 043172 492 NDAQILAICSTMKKNSLKLIHIPS 515 (564)
Q Consensus 492 pdg~~La~~s~~~d~~I~lwdl~s 515 (564)
++| ..++.- .-|..|.-|++..
T Consensus 387 ~~G-~aYTtl-fidSqvvkWni~~ 408 (638)
T 3sbq_A 387 GRG-NAYTTL-FIDSQVVKWNMEE 408 (638)
T ss_dssp SSS-EEEEEE-TTTTEEEEEEHHH
T ss_pred CCC-ceEeee-eecceEEEEeccH
Confidence 999 333333 2389999999965
No 307
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.92 E-value=0.0021 Score=62.93 Aligned_cols=233 Identities=14% Similarity=0.156 Sum_probs=122.8
Q ss_pred CCEEEEEeCC----CcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCC-----CeEEEEECCCCceeeec
Q 043172 274 AQLLLVAGLD----RRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRR-----KFFYSLDLVKAKADKIG 344 (564)
Q Consensus 274 g~~l~s~s~d----g~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~d-----g~i~iwdl~~~~~~~~~ 344 (564)
+.+++.||.+ ..+.+||+.......+..+...... .+++ .-++..++.||.+ ..+.+||+.+.+...+.
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~-~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 93 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCR-AGMV-YMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA 93 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CEEE-EETTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCccccc-ceEE-EECCEEEEEeCcCCCccccceEEECCCCCceeeCC
Confidence 4466666643 3567777764432222211111111 1222 2356666666643 35899999998877665
Q ss_pred cccccCCcceEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCcEEEEeeecC--cEEEEEEecCCCEEEEEeCC----
Q 043172 345 PLVGREEKSLEFFEVSPDSSVIAFVGNE-----GYILLVSSKTKELIGTLKMNG--TVRSLAFADDGKQLLSSGGD---- 413 (564)
Q Consensus 345 ~~~~~~~~~v~~~~~spdg~~la~~~~d-----g~I~lwd~~t~~~~~~~~~~~--~V~~l~~spdg~~l~s~s~d---- 413 (564)
.+..... ....+.+ ++.++++|+.+ ..+.+||+.+.++...-.... .-.+++. -++++++.|+.+
T Consensus 94 ~~p~~r~-~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~ 169 (302)
T 2xn4_A 94 NMRDRRS-TLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASR 169 (302)
T ss_dssp CCSSCCB-SCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTT
T ss_pred CCCcccc-ceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCC
Confidence 5443322 1222222 57777788765 368899999888765433211 1112222 256666666542
Q ss_pred ---CeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCC-----CcEEEEeCCcccCCcceeeEEccccccce
Q 043172 414 ---GQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDS-----GIVNVYNRQEFLGGKRKPIKTIENLTTKV 485 (564)
Q Consensus 414 ---g~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~d-----g~V~iwd~~~~~~~~~~~~~~~~~~~~~I 485 (564)
..+.+||+.+.+-...-.........+++. -++.+++.|+.+ ..+.+||..+. ....+..+.......
T Consensus 170 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~---~W~~~~~~~~~r~~~ 245 (302)
T 2xn4_A 170 QCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTN---AWRQVADMNMCRRNA 245 (302)
T ss_dssp EECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBSSSSBCCCEEEEETTTT---EEEEECCCSSCCBSC
T ss_pred ccccEEEEEeCCCCcEEECCCCccccccccEEE-ECCEEEEECCCCCCcccceEEEEeCCCC---CEeeCCCCCCccccC
Confidence 358999998765433211111111112222 256777777654 36889998763 223332222111111
Q ss_pred eEEEEcCCCcEEEEEecCC---CCeEEEEEcCCCce
Q 043172 486 DFMKFNNDAQILAICSTMK---KNSLKLIHIPSYNV 518 (564)
Q Consensus 486 ~~l~fspdg~~La~~s~~~---d~~I~lwdl~s~~~ 518 (564)
..+ .-+++++++|+... -..+.+||+.+.+-
T Consensus 246 ~~~--~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 279 (302)
T 2xn4_A 246 GVC--AVNGLLYVVGGDDGSCNLASVEYYNPTTDKW 279 (302)
T ss_dssp EEE--EETTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred eEE--EECCEEEEECCcCCCcccccEEEEcCCCCeE
Confidence 222 23677777776521 13588999887643
No 308
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.92 E-value=0.0086 Score=58.75 Aligned_cols=242 Identities=9% Similarity=0.041 Sum_probs=140.5
Q ss_pred cCCCCEEEEEeC--CCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCC--------------CeEEEEE
Q 043172 271 HRNAQLLLVAGL--DRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRR--------------KFFYSLD 334 (564)
Q Consensus 271 spdg~~l~s~s~--dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~d--------------g~i~iwd 334 (564)
++++.+|+.... ++.|...+.++....++..- .+..|+++|.+|+.+..+ ..|+..+
T Consensus 22 ~~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~~-------~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~ 94 (302)
T 3s25_A 22 CESDGEVFFSNTNDNGRLYAMNIDGSNIHKLSND-------TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIK 94 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEEETTSCSCEEEEEE-------EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEE
T ss_pred EEeCCEEEEEeCCCCceEEEEcCCCCCCEEccCC-------ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEe
Confidence 356777766643 45566666665543333321 245678999999988643 4688888
Q ss_pred CCCCceeeeccccccCCcceEEEEEcCCCCEEEEEe----CCCeEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEE
Q 043172 335 LVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVG----NEGYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSS 410 (564)
Q Consensus 335 l~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~----~dg~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~ 410 (564)
+.++....+... .+..|+++++.|+.+. ....|+..++..........+.. .+|+|+++.|+-.
T Consensus 95 ~dg~~~~~l~~~--------~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g~~iy~t 162 (302)
T 3s25_A 95 RNGHGSTVLDPD--------PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL----FTCNTSDRYFYYN 162 (302)
T ss_dssp TTSCCCEEEECS--------CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC----CCSEEETTEEEEE
T ss_pred CCCCcceEeecC--------CccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc----eEeeEECCEEEEE
Confidence 887765443221 1236788999998876 34567777876544333322322 4567888888876
Q ss_pred eC-CCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCC--CcEEEEeCCcccCCcceeeEEccccccceeE
Q 043172 411 GG-DGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDS--GIVNVYNRQEFLGGKRKPIKTIENLTTKVDF 487 (564)
Q Consensus 411 s~-dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~d--g~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~ 487 (564)
+. ...|++.++..+... .+.. +.. ...++|++.+|+-.... ..|..-++... ....+.. ..+
T Consensus 163 ~~g~~~Iy~~~l~g~~~~-~l~~-~~~---~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~------~~~~Lt~--~~~-- 227 (302)
T 3s25_A 163 NPKNGQLYRYDTASQSEA-LFYD-CNC---YKPVVLDDTNVYYMDVNRDNAIVHVNINNP------NPVVLTE--ANI-- 227 (302)
T ss_dssp CTTTCCEEEEETTTTEEE-EEEC-SCE---EEEEEEETTEEEEEEGGGTTEEEEECSSSC------CCEECSC--SCE--
T ss_pred eCCCceEEEEECCCCCEE-EEeC-CCc---cceeeecCCEEEEEEcCCCcEEEEEECCCC------CeEEEeC--CCc--
Confidence 65 578999998765543 3322 222 23456899988876543 34555555542 2223321 223
Q ss_pred EEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEc-CCCeEE
Q 043172 488 MKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGN-AAGKVF 554 (564)
Q Consensus 488 l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs-~dG~V~ 554 (564)
..|+|++.+|+.++....+.|...++..... ..+.. +.+. .+++.+.+|+-.. ..+.|.
T Consensus 228 ~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~r-~~l~~-----~~~~--~i~i~~d~Iy~td~~~~~i~ 287 (302)
T 3s25_A 228 EHYNVYGSLIFYQRGGDNPALCVVKNDGTGF-KELAK-----GEFC--NINVTSQYVYFTDFVSNKEY 287 (302)
T ss_dssp EEEEEETTEEEEEECSSSCEEEEEETTSCCC-EEEEE-----SCEE--EEEECSSEEEEEETTTCCEE
T ss_pred ceEEECCCEEEEEECCCCcEEEEEECCCCcc-EEeeC-----Cccc--eEEEeCCEEEEEECCCCeEE
Confidence 3488899999877543356777777754322 22211 1233 4556777776554 334443
No 309
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.90 E-value=0.0053 Score=60.08 Aligned_cols=228 Identities=11% Similarity=0.089 Sum_probs=123.8
Q ss_pred EEEEEeC--CCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCC----CeEEEEECCCCcEEEEeeecC
Q 043172 320 QAIIAGR--RKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNE----GYILLVSSKTKELIGTLKMNG 393 (564)
Q Consensus 320 ~l~s~~~--dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d----g~I~lwd~~t~~~~~~~~~~~ 393 (564)
.++.||. ...+.+||..+.+...+..++.... ....+. -++.++++|+.+ ..+.+||+.+.++...-....
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~-~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRR-DAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCB-SCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccc-eeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence 4445553 3579999999988776655443322 122222 366777777754 679999999988765433211
Q ss_pred -cE-EEEEEecCCCEEEEEeCC------CeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeC---------C
Q 043172 394 -TV-RSLAFADDGKQLLSSGGD------GQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSD---------S 456 (564)
Q Consensus 394 -~V-~~l~~spdg~~l~s~s~d------g~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~---------d 456 (564)
.. .+++ .-++++++.|+.+ ..+.+||+.+.+-...-.........+++. .++++++.|+. -
T Consensus 91 ~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~ 168 (306)
T 3ii7_A 91 PRDSLAAC-AAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRVL 168 (306)
T ss_dssp CCBSCEEE-EETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEEC
T ss_pred cccceeEE-EECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCccccc
Confidence 11 1122 2266777777654 468999998876433211111111112222 25667777653 3
Q ss_pred CcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCC---CeEEEEEcCCCceeccCCCCCCCCCCcE
Q 043172 457 GIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKK---NSLKLIHIPSYNVFSNWPPANRNLQYPR 533 (564)
Q Consensus 457 g~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d---~~I~lwdl~s~~~~~~~~~~~~~~~~V~ 533 (564)
..+.+||..+. ....+..+......-..+.+ +++++++|+.... ..+.+||+.+.+-.. ++....+.....
T Consensus 169 ~~~~~yd~~~~---~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~r~~~~ 242 (306)
T 3ii7_A 169 NSCEVYDPATE---TWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKM-VSPMPWKGVTVK 242 (306)
T ss_dssp CCEEEEETTTT---EEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEE-CCCCSCCBSCCE
T ss_pred ceEEEeCCCCC---eEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEE-CCCCCCCcccee
Confidence 45889998764 22333222211111222222 6777777664221 468899988754322 122211222233
Q ss_pred EEEEeCCCCEEEEEcCC-----CeEEEEEcCC
Q 043172 534 CLDFSPGGGFMAVGNAA-----GKVFLYKLNH 560 (564)
Q Consensus 534 ~l~fspdg~~Lasgs~d-----G~V~lw~l~~ 560 (564)
++.+ ++.+++.|+.+ ..+.+|++.+
T Consensus 243 ~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~ 272 (306)
T 3ii7_A 243 CAAV--GSIVYVLAGFQGVGRLGHILEYNTET 272 (306)
T ss_dssp EEEE--TTEEEEEECBCSSSBCCEEEEEETTT
T ss_pred EEEE--CCEEEEEeCcCCCeeeeeEEEEcCCC
Confidence 3333 67788888754 4578888764
No 310
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.89 E-value=0.015 Score=63.11 Aligned_cols=227 Identities=12% Similarity=0.022 Sum_probs=143.5
Q ss_pred EEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCcEEEEeee-cCcEEE
Q 043172 320 QAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVG-NEGYILLVSSKTKELIGTLKM-NGTVRS 397 (564)
Q Consensus 320 ~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~-~dg~I~lwd~~t~~~~~~~~~-~~~V~~ 397 (564)
+|+.+ ....|+..++.+........+.+. ..+..++|++.+..|+.+. ..+.|..+++........+.. ...+..
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~--~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~G 84 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGV--KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEG 84 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSC--SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCE
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCC--CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcce
Confidence 45544 467899999987654433333332 2478999999777666554 568999999876544433332 245778
Q ss_pred EEEecCCCEEEEE-eCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEe--CCCcEEEEeCCcccCCccee
Q 043172 398 LAFADDGKQLLSS-GGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGS--DSGIVNVYNRQEFLGGKRKP 474 (564)
Q Consensus 398 l~~spdg~~l~s~-s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs--~dg~V~iwd~~~~~~~~~~~ 474 (564)
+++.+.+..|+.+ ...+.|.+.++..... ..+..........|+++|...+|+... ..+.|...++... .
T Consensus 85 lAvD~~~~~LY~tD~~~~~I~v~~~dG~~~-~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~-----~- 157 (628)
T 4a0p_A 85 MAVDWLGKNLYWADTGTNRIEVSKLDGQHR-QVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGS-----E- 157 (628)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSTTC-EEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-----S-
T ss_pred EEEEeCCCEEEEEECCCCEEEEEecCCCcE-EEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCC-----c-
Confidence 9998766555544 4568899999875433 233323333568999998655555543 3567888887653 1
Q ss_pred eEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEE
Q 043172 475 IKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVF 554 (564)
Q Consensus 475 ~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~ 554 (564)
...+.........|++.++++.|+.+... .+.|..+++..... ..+. .......+|++.. +..+++-...+.|.
T Consensus 158 ~~~l~~~~~~P~GlalD~~~~~LY~aD~~-~~~I~~~d~dG~~~-~v~~---~~l~~P~glav~~-~~ly~tD~~~~~I~ 231 (628)
T 4a0p_A 158 RTTLVPNVGRANGLTIDYAKRRLYWTDLD-TNLIESSNMLGLNR-EVIA---DDLPHPFGLTQYQ-DYIYWTDWSRRSIE 231 (628)
T ss_dssp CEEEECSCSSEEEEEEETTTTEEEEEETT-TTEEEEEETTSCSC-EEEE---ECCSCEEEEEEET-TEEEEEETTTTEEE
T ss_pred eEEEECCCCCcceEEEccccCEEEEEECC-CCEEEEEcCCCCce-EEee---ccCCCceEEEEEC-CEEEEecCCCCEEE
Confidence 22222234567899999988888877654 68899999865332 2111 1234566888865 34444444577888
Q ss_pred EEEcCCCC
Q 043172 555 LYKLNHYH 562 (564)
Q Consensus 555 lw~l~~~~ 562 (564)
..+..+.+
T Consensus 232 ~~dk~tg~ 239 (628)
T 4a0p_A 232 RANKTSGQ 239 (628)
T ss_dssp EEETTTCC
T ss_pred EEECCCCC
Confidence 77765543
No 311
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.88 E-value=0.0031 Score=61.50 Aligned_cols=220 Identities=10% Similarity=0.067 Sum_probs=117.9
Q ss_pred CeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCc---EEEEeeecC--cEEE
Q 043172 328 KFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNE-----GYILLVSSKTKE---LIGTLKMNG--TVRS 397 (564)
Q Consensus 328 g~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-----g~I~lwd~~t~~---~~~~~~~~~--~V~~ 397 (564)
..+.+||+.+.+...+..+..... ....+ ..++.++++|+.+ ..+.+||+.+.+ +...-.... .-.+
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~-~~~~~--~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~ 107 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRR-YVASV--SLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAG 107 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCB-SCEEE--EETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhc-cccEE--EECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCcccee
Confidence 368899999888766554433221 12222 2356777777754 469999999887 654433111 1112
Q ss_pred EEEecCCCEEEEEeCC-----CeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCC-----CcEEEEeCCcc
Q 043172 398 LAFADDGKQLLSSGGD-----GQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDS-----GIVNVYNRQEF 467 (564)
Q Consensus 398 l~~spdg~~l~s~s~d-----g~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~d-----g~V~iwd~~~~ 467 (564)
++. .++.+++.|+.+ ..+.+||+.+.+-...-.........+++. .++++++.|+.+ ..+.+||..+.
T Consensus 108 ~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~ 185 (301)
T 2vpj_A 108 ATT-LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV-ASGVIYCLGGYDGLNILNSVEKYDPHTG 185 (301)
T ss_dssp EEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE-ETTEEEEECCBCSSCBCCCEEEEETTTT
T ss_pred EEE-ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE-ECCEEEEECCCCCCcccceEEEEeCCCC
Confidence 222 256677776643 368999998776443222111111112222 266777777654 46889998763
Q ss_pred cCCcceeeEEccccccceeEEEEcCCCcEEEEEecCC---CCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEE
Q 043172 468 LGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMK---KNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFM 544 (564)
Q Consensus 468 ~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~---d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~L 544 (564)
....+..+.........+. -++.++++|+... -+.+.+||+.+.+-... +....+.....++. -++.++
T Consensus 186 ---~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~-~~~p~~r~~~~~~~--~~~~i~ 257 (301)
T 2vpj_A 186 ---HWTNVTPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTV-TSMTTPRCYVGATV--LRGRLY 257 (301)
T ss_dssp ---EEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEE-CCCSSCCBSCEEEE--ETTEEE
T ss_pred ---cEEeCCCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEEEC-CCCCCcccceeEEE--ECCEEE
Confidence 2233322222111222222 2667777776532 24689999987643322 11111112222333 267777
Q ss_pred EEEcCC-----CeEEEEEcCC
Q 043172 545 AVGNAA-----GKVFLYKLNH 560 (564)
Q Consensus 545 asgs~d-----G~V~lw~l~~ 560 (564)
+.|+.+ ..|.+|++.+
T Consensus 258 v~GG~~~~~~~~~v~~yd~~~ 278 (301)
T 2vpj_A 258 AIAGYDGNSLLSSIECYDPII 278 (301)
T ss_dssp EECCBCSSSBEEEEEEEETTT
T ss_pred EEcCcCCCcccccEEEEcCCC
Confidence 888765 3577788754
No 312
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.84 E-value=0.0017 Score=64.00 Aligned_cols=230 Identities=10% Similarity=0.063 Sum_probs=120.4
Q ss_pred EEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeC-----C------CeEEEEECCCCceeeec
Q 043172 276 LLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGR-----R------KFFYSLDLVKAKADKIG 344 (564)
Q Consensus 276 ~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~-----d------g~i~iwdl~~~~~~~~~ 344 (564)
+++.|+ ..+.+||....+... ..+..........+...++..++.||. . ..+.+||+.+.+...+.
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 83 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP 83 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred EEEEcC--CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence 455565 568888877544322 222211122233333457777777773 1 13888999998876654
Q ss_pred cccccCCcceEEEEEcCCCCEEEEEeCC--------CeEEEEECCCCcEEEEeeecC-cEEEEEEecCCCEEEEEeC-C-
Q 043172 345 PLVGREEKSLEFFEVSPDSSVIAFVGNE--------GYILLVSSKTKELIGTLKMNG-TVRSLAFADDGKQLLSSGG-D- 413 (564)
Q Consensus 345 ~~~~~~~~~v~~~~~spdg~~la~~~~d--------g~I~lwd~~t~~~~~~~~~~~-~V~~l~~spdg~~l~s~s~-d- 413 (564)
.++.... ....+.+ ++.++++|+.+ ..+.+||+.+.++...-.... .....+..-++++++.|+. +
T Consensus 84 ~~p~~r~-~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~ 160 (315)
T 4asc_A 84 PLPSPRC-LFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSD 160 (315)
T ss_dssp CBSSCEE-SCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTT
T ss_pred CCCcchh-ceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCC
Confidence 4432221 1122222 56677777732 468999999887765433211 1111112235667777765 2
Q ss_pred ----CeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCC-----cEEEEeCCcccCCcceeeEEccccccc
Q 043172 414 ----GQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSG-----IVNVYNRQEFLGGKRKPIKTIENLTTK 484 (564)
Q Consensus 414 ----g~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg-----~V~iwd~~~~~~~~~~~~~~~~~~~~~ 484 (564)
..+.+||+.+.+-...-.........+++. -++++++.|+.++ .+.+||..+. ....+..+......
T Consensus 161 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~---~W~~~~~~p~~r~~ 236 (315)
T 4asc_A 161 RKCLNKMCVYDPKKFEWKELAPMQTARSLFGATV-HDGRIIVAAGVTDTGLTSSAEVYSITDN---KWAPFEAFPQERSS 236 (315)
T ss_dssp SCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEEEEECSSSEEEEEEEEETTTT---EEEEECCCSSCCBS
T ss_pred CcccceEEEEeCCCCeEEECCCCCCchhceEEEE-ECCEEEEEeccCCCCccceEEEEECCCC---eEEECCCCCCcccc
Confidence 468999998765432111111111112222 2667777777654 5888998763 22333322221222
Q ss_pred eeEEEEcCCCcEEEEEecCC------------CCeEEEEEcCCCc
Q 043172 485 VDFMKFNNDAQILAICSTMK------------KNSLKLIHIPSYN 517 (564)
Q Consensus 485 I~~l~fspdg~~La~~s~~~------------d~~I~lwdl~s~~ 517 (564)
...+. -+++++++|+... -+.|.+||+.+.+
T Consensus 237 ~~~~~--~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 279 (315)
T 4asc_A 237 LSLVS--LVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK 279 (315)
T ss_dssp CEEEE--ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred eeEEE--ECCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence 22222 2667777776521 1347788887654
No 313
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.83 E-value=0.024 Score=65.90 Aligned_cols=282 Identities=13% Similarity=0.106 Sum_probs=154.0
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeC------CCEEEEEeC-CCeEEEEE
Q 043172 262 TGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPD------GSQAIIAGR-RKFFYSLD 334 (564)
Q Consensus 262 ~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspd------g~~l~s~~~-dg~i~iwd 334 (564)
...|.+.+.+. .+++.++ .+.|.++.++......+.... -...|.|+++.|. +.++++|.. +++++|+.
T Consensus 513 ~~~I~~As~n~--~~vvva~-g~~l~~fel~~~~L~~~~~~~-l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~s 588 (1158)
T 3ei3_A 513 AKNISVASCNS--SQVVVAV-GRALYYLQIHPQELRQISHTE-MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILK 588 (1158)
T ss_dssp CCCCCEEEECS--SEEEEEE-TTEEEEEEEETTEEEEEEEEE-CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEE
T ss_pred CCEEEEEEeCC--CEEEEEE-CCEEEEEEeeCCceeeecccC-CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEE
Confidence 34677777653 3565554 678888888743222233322 3467999999863 468888886 99999999
Q ss_pred CCCCceeeeccccccCCcceEEEEEc--CCCCEEEEEeCCCeEEEEEC--CCCcEEEEee---ecCcEEEEEEecCCCEE
Q 043172 335 LVKAKADKIGPLVGREEKSLEFFEVS--PDSSVIAFVGNEGYILLVSS--KTKELIGTLK---MNGTVRSLAFADDGKQL 407 (564)
Q Consensus 335 l~~~~~~~~~~~~~~~~~~v~~~~~s--pdg~~la~~~~dg~I~lwd~--~t~~~~~~~~---~~~~V~~l~~spdg~~l 407 (564)
+.+.+......+.... ...++.+. ....+|.+|-.+|.+..+.+ .+++....-. ...++.=..+...+..-
T Consensus 589 L~~l~~~~~~~L~~~~--~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~ 666 (1158)
T 3ei3_A 589 LPSFELLHKEMLGGEI--IPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTN 666 (1158)
T ss_dssp TTTCCEEEEEECCSSC--CEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEE
T ss_pred CCCCCeEEEEECCCCC--CCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCcee
Confidence 9876654443343211 23333332 23457888888998765544 4565543321 33345444444444333
Q ss_pred EEEeCCCeEEEEECCCCceeEEEeecCCcce-EEEEECCC--CCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccc
Q 043172 408 LSSGGDGQVYHWDLRTRTCIHRAVDEGCING-TALCTSPD--GTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTK 484 (564)
Q Consensus 408 ~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i-~~l~~sp~--g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~ 484 (564)
+.+..+....++--. ++.. +..-....+ ....|+.. ..-++..+ ++.++|..+... ..-+++++. ....
T Consensus 667 V~a~s~rp~liy~~~-~~l~--~s~l~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~---~~~~~~~ip-L~~T 738 (1158)
T 3ei3_A 667 VFACSDRPTVIYSSN-HKLV--FSNVNLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEI---QKLHIRTVP-LYES 738 (1158)
T ss_dssp EEEESSSCEEEEESS-SSEE--EEEBSSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCS---SSEEEEEEE-CSSE
T ss_pred EEEECCCCEEEEEcC-CceE--EeccChHHhceEeccCcccCCCcEEEEc-CCceEEEEeccc---CCeeEEEEe-CCCC
Confidence 333334444445433 3322 221111122 22334432 23344444 445888887653 123444443 3467
Q ss_pred eeEEEEcCCCcEEEEEecCC-----------------------------------------------CCeEEEEEcCCCc
Q 043172 485 VDFMKFNNDAQILAICSTMK-----------------------------------------------KNSLKLIHIPSYN 517 (564)
Q Consensus 485 I~~l~fspdg~~La~~s~~~-----------------------------------------------d~~I~lwdl~s~~ 517 (564)
+..++++|..+.++++.... .+.|+++|-.+.+
T Consensus 739 prri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~ 818 (1158)
T 3ei3_A 739 PRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFE 818 (1158)
T ss_dssp EEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCC
T ss_pred ceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCe
Confidence 78888888777665543210 1346777776666
Q ss_pred eeccCCCCCCCCCCcEEEE---EeCC-CCEEEEEc----------CCCeEEEEEcC
Q 043172 518 VFSNWPPANRNLQYPRCLD---FSPG-GGFMAVGN----------AAGKVFLYKLN 559 (564)
Q Consensus 518 ~~~~~~~~~~~~~~V~~l~---fspd-g~~Lasgs----------~dG~V~lw~l~ 559 (564)
.+..+.... ...+.+++ |..+ ..+|++|+ ..|+|++|++.
T Consensus 819 ~i~~~~l~~--nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~ 872 (1158)
T 3ei3_A 819 VLHAHQFLQ--NEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYS 872 (1158)
T ss_dssp EEEEEECCT--TEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEE
T ss_pred EEEEEeCCC--CcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEE
Confidence 654433221 12344444 3322 46888886 46889999875
No 314
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.82 E-value=7.2e-05 Score=82.79 Aligned_cols=220 Identities=10% Similarity=0.000 Sum_probs=126.5
Q ss_pred CCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEe-CCCeEEEEECCC----CcEEEEee-ecCcEEEEEE
Q 043172 327 RKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVG-NEGYILLVSSKT----KELIGTLK-MNGTVRSLAF 400 (564)
Q Consensus 327 dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~-~dg~I~lwd~~t----~~~~~~~~-~~~~V~~l~~ 400 (564)
.+.|++.++.+.....+.. .. ..+..++|.+.+..|+.+. ..+.|+.+++.+ ......+. ....+..|++
T Consensus 385 ~~~I~~id~~~~~~~~~~~--~~--~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glav 460 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIP--NL--RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV 460 (699)
T ss_dssp TTC-CEECTTSCCEECCSC--CC--TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEEC
T ss_pred ccceEEEeCCCCcceeeec--cC--cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEE
Confidence 4578888888766543322 11 1356789998777777664 457899999875 22211121 1123567888
Q ss_pred ecCCCEEE-EEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEe-C-CCcEEEEeCCcccCCcceeeEE
Q 043172 401 ADDGKQLL-SSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGS-D-SGIVNVYNRQEFLGGKRKPIKT 477 (564)
Q Consensus 401 spdg~~l~-s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs-~-dg~V~iwd~~~~~~~~~~~~~~ 477 (564)
.+.+..|+ +-...+.|.++++...... .+..........|+++|.+.+|+... . .+.|.++++... .....
T Consensus 461 D~~~g~LY~tD~~~~~I~v~d~dg~~~~-~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~-----~~~~l 534 (699)
T 1n7d_A 461 DWIHSNIYWTDSVLGTVSVADTKGVKRK-TLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-----DIYSL 534 (699)
T ss_dssp CCSSSBCEECCTTTSCEEEEBSSSCCEE-EECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC-----CCCEE
T ss_pred EeeCCcEEEEeccCCeEEEEecCCCceE-EEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC-----CeeEE
Confidence 76444444 4445688999998755433 33322223456788998765544433 2 368888877642 11111
Q ss_pred ccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEE
Q 043172 478 IENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYK 557 (564)
Q Consensus 478 ~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~ 557 (564)
+.........|+|+|++..|+++... .+.|..+++....... +...........+|++..+ .++++....+.|..++
T Consensus 535 ~~~~l~~PnGlavd~~~~~LY~aD~~-~~~I~~~d~dG~~~~~-~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d 611 (699)
T 1n7d_A 535 VTENIQWPNGITLDLLSGRLYWVDSK-LHSISSIDVNGGNRKT-ILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSAN 611 (699)
T ss_dssp SCSSCSSCCCEEECTTTCCEEEEETT-TTEEEEECSSSSCCEE-ECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEE
T ss_pred EeCCCCCccEEEEeccCCEEEEEecC-CCeEEEEccCCCceEE-EEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEE
Confidence 22223456789999987777776653 6889999986432222 2111112234456666554 4444445567888887
Q ss_pred cC
Q 043172 558 LN 559 (564)
Q Consensus 558 l~ 559 (564)
..
T Consensus 612 ~~ 613 (699)
T 1n7d_A 612 RL 613 (699)
T ss_dssp TT
T ss_pred cc
Confidence 54
No 315
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.82 E-value=0.0031 Score=61.63 Aligned_cols=229 Identities=14% Similarity=0.142 Sum_probs=121.0
Q ss_pred CEEEEEeCC----CeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCcEEEEe
Q 043172 319 SQAIIAGRR----KFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNE-----GYILLVSSKTKELIGTL 389 (564)
Q Consensus 319 ~~l~s~~~d----g~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-----g~I~lwd~~t~~~~~~~ 389 (564)
..++.||.+ ..+.+||+.+.....+..++.... ....+.+ ++.++++|+.+ ..+.+||..+.++...-
T Consensus 17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~-~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 93 (302)
T 2xn4_A 17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRC-RAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA 93 (302)
T ss_dssp EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCB-SCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccc-cceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCC
Confidence 344445432 458899999887766544433222 1122222 67777777754 36899999988876543
Q ss_pred eecC--cEEEEEEecCCCEEEEEeCCC-----eEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCC------
Q 043172 390 KMNG--TVRSLAFADDGKQLLSSGGDG-----QVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDS------ 456 (564)
Q Consensus 390 ~~~~--~V~~l~~spdg~~l~s~s~dg-----~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~d------ 456 (564)
.... .-.+++. -++.+++.|+.++ .+.+||+.+.+-...-.........+++. .++++++.|+.+
T Consensus 94 ~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~ 171 (302)
T 2xn4_A 94 NMRDRRSTLGAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQC 171 (302)
T ss_dssp CCSSCCBSCEEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTTEE
T ss_pred CCCccccceEEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCCcc
Confidence 3211 1112222 2567777777543 58899998766433211111111122222 256677776542
Q ss_pred -CcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCC---CCeEEEEEcCCCceeccCCCCCCCCCCc
Q 043172 457 -GIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMK---KNSLKLIHIPSYNVFSNWPPANRNLQYP 532 (564)
Q Consensus 457 -g~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~---d~~I~lwdl~s~~~~~~~~~~~~~~~~V 532 (564)
..+.+||..+. ....+..+.........+. -++.++++|+... -+.+.+||+.+.+-... +....+....
T Consensus 172 ~~~~~~yd~~~~---~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-~~~~~~r~~~ 245 (302)
T 2xn4_A 172 LSTVECYNATTN---EWTYIAEMSTRRSGAGVGV--LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQV-ADMNMCRRNA 245 (302)
T ss_dssp CCCEEEEETTTT---EEEEECCCSSCCBSCEEEE--ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEE-CCCSSCCBSC
T ss_pred ccEEEEEeCCCC---cEEECCCCccccccccEEE--ECCEEEEECCCCCCcccceEEEEeCCCCCEeeC-CCCCCccccC
Confidence 35889998763 2233322222222222222 2677777776522 24688999877543321 1111111222
Q ss_pred EEEEEeCCCCEEEEEcCCC-----eEEEEEcCC
Q 043172 533 RCLDFSPGGGFMAVGNAAG-----KVFLYKLNH 560 (564)
Q Consensus 533 ~~l~fspdg~~Lasgs~dG-----~V~lw~l~~ 560 (564)
..+. -++.+++.|+.++ .|.+||+.+
T Consensus 246 ~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~ 276 (302)
T 2xn4_A 246 GVCA--VNGLLYVVGGDDGSCNLASVEYYNPTT 276 (302)
T ss_dssp EEEE--ETTEEEEECCBCSSSBCCCEEEEETTT
T ss_pred eEEE--ECCEEEEECCcCCCcccccEEEEcCCC
Confidence 2222 3677788887654 478888754
No 316
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.79 E-value=0.017 Score=57.66 Aligned_cols=241 Identities=13% Similarity=0.113 Sum_probs=131.3
Q ss_pred cCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeecc---ccccCCcceEEEEEcCC---CCEEEEE---eCCCeEEE
Q 043172 307 CPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGP---LVGREEKSLEFFEVSPD---SSVIAFV---GNEGYILL 377 (564)
Q Consensus 307 ~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~---~~~~~~~~v~~~~~spd---g~~la~~---~~dg~I~l 377 (564)
.....|+|.|+|..+++--..|.|++++..++....+.. +..........++++|+ +..|++. ...+.|.-
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R 111 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR 111 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence 456799999999866654448999999876665433322 22222346789999995 3444443 23456777
Q ss_pred EECCCC----------cEE-EEee--ecCcEEEEEEecCCCEEEEEeC-------------CCeEEEEECCCCc------
Q 043172 378 VSSKTK----------ELI-GTLK--MNGTVRSLAFADDGKQLLSSGG-------------DGQVYHWDLRTRT------ 425 (564)
Q Consensus 378 wd~~t~----------~~~-~~~~--~~~~V~~l~~spdg~~l~s~s~-------------dg~V~lwD~~~~~------ 425 (564)
|.+..+ +.+ ..+. .......|.|.|+|.++++.+. .|.|.-++....-
T Consensus 112 ~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf 191 (347)
T 3das_A 112 MLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPF 191 (347)
T ss_dssp EEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSS
T ss_pred EEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCC
Confidence 766541 111 1222 1123457999999987776542 3555555554220
Q ss_pred -eeEEEeecCCcceEEEEECCCCCEEEEEe-CCC--cEEEEeCCccc-----------CCcceeeEEccccccceeEEEE
Q 043172 426 -CIHRAVDEGCINGTALCTSPDGTFFAAGS-DSG--IVNVYNRQEFL-----------GGKRKPIKTIENLTTKVDFMKF 490 (564)
Q Consensus 426 -~~~~~~~~~~~~i~~l~~sp~g~~lasgs-~dg--~V~iwd~~~~~-----------~~~~~~~~~~~~~~~~I~~l~f 490 (564)
....+...+ -....++|+|+|.++++=. .++ .|++...-... .....|+..+..+......|+|
T Consensus 192 ~~~~i~a~G~-RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~ 270 (347)
T 3das_A 192 PGSPVYSYGH-RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAY 270 (347)
T ss_dssp TTCCEEEBCC-SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEE
T ss_pred CCCeEEeeCC-CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEE
Confidence 011222222 2457899999887655432 232 23332211110 0112344454443346677888
Q ss_pred cCCCcEEEEEecCCCCeEEEEEcCCCceecc-CCCCCCCCCCcEEEEEeCCCCEEEEE-cCCC
Q 043172 491 NNDAQILAICSTMKKNSLKLIHIPSYNVFSN-WPPANRNLQYPRCLDFSPGGGFMAVG-NAAG 551 (564)
Q Consensus 491 spdg~~La~~s~~~d~~I~lwdl~s~~~~~~-~~~~~~~~~~V~~l~fspdg~~Lasg-s~dG 551 (564)
.. |.++...-. .+.|..+.+........ -.......+++..|+..|||.++++. +.+|
T Consensus 271 ~~-g~~~~~~l~--~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td~~~g 330 (347)
T 3das_A 271 AE-GSVWMAGLR--GERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTSNTDG 330 (347)
T ss_dssp ET-TEEEEEEST--TCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEECTTSS
T ss_pred Ec-Cceeecccc--CCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEcCCCC
Confidence 74 554444433 45666666654432111 00112234789999999999876654 3443
No 317
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.79 E-value=0.0016 Score=64.04 Aligned_cols=232 Identities=9% Similarity=0.048 Sum_probs=123.3
Q ss_pred CCCEEEEEeCC----CcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeC----C-----CeEEEEECCCCc
Q 043172 273 NAQLLLVAGLD----RRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGR----R-----KFFYSLDLVKAK 339 (564)
Q Consensus 273 dg~~l~s~s~d----g~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~----d-----g~i~iwdl~~~~ 339 (564)
++.+++.||.. ..+.+||........+..+....... +++ ..++..++.||. + ..+.+||+.+.+
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~-~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~ 101 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGC-VVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ 101 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEE-EETTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEE-EECCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence 56677777742 35778877654333332222111111 222 235666666664 2 468899999988
Q ss_pred eeeeccccccCCcceEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCcEEEEeeecC--cEEEEEEecCCCEEEEEeC
Q 043172 340 ADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNE-----GYILLVSSKTKELIGTLKMNG--TVRSLAFADDGKQLLSSGG 412 (564)
Q Consensus 340 ~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-----g~I~lwd~~t~~~~~~~~~~~--~V~~l~~spdg~~l~s~s~ 412 (564)
...+..+..... ....+.+ ++.++++|+.+ ..+.+||+.+.++...-.... .-.+++.. ++.+++.|+.
T Consensus 102 W~~~~~~p~~r~-~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~ 177 (308)
T 1zgk_A 102 WSPCAPMSVPRN-RIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGGF 177 (308)
T ss_dssp EEECCCCSSCCB-TCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCB
T ss_pred EeECCCCCcCcc-ccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE-CCEEEEEeCC
Confidence 766654443222 1222222 67777777643 468899999888765433111 11122222 5667777765
Q ss_pred C-----CeEEEEECCCCceeEEEeec-CCcceEEEEECCCCCEEEEEeCC-----CcEEEEeCCcccCCcceeeEEcccc
Q 043172 413 D-----GQVYHWDLRTRTCIHRAVDE-GCINGTALCTSPDGTFFAAGSDS-----GIVNVYNRQEFLGGKRKPIKTIENL 481 (564)
Q Consensus 413 d-----g~V~lwD~~~~~~~~~~~~~-~~~~i~~l~~sp~g~~lasgs~d-----g~V~iwd~~~~~~~~~~~~~~~~~~ 481 (564)
+ ..+.+||+.+.+-...-... .......+.+ ++.+++.|+.+ ..+.+||+.+. ....+..+...
T Consensus 178 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~---~W~~~~~~p~~ 252 (308)
T 1zgk_A 178 DGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETE---TWTFVAPMKHR 252 (308)
T ss_dssp CSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTT---EEEECCCCSSC
T ss_pred CCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCC---cEEECCCCCCC
Confidence 4 46899999876543221111 1111122222 66777777654 46899998763 22333222221
Q ss_pred ccceeEEEEcCCCcEEEEEecCC---CCeEEEEEcCCCc
Q 043172 482 TTKVDFMKFNNDAQILAICSTMK---KNSLKLIHIPSYN 517 (564)
Q Consensus 482 ~~~I~~l~fspdg~~La~~s~~~---d~~I~lwdl~s~~ 517 (564)
......+. -+++++++|+... -..+.+||+.+.+
T Consensus 253 r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 253 RSALGITV--HQGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp CBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred ccceEEEE--ECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 12222222 2677777776421 2467888887654
No 318
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=97.78 E-value=0.031 Score=58.12 Aligned_cols=106 Identities=13% Similarity=0.095 Sum_probs=63.4
Q ss_pred cCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccc-----cCCcceEEEEEcCC---CCEEEEEeC-------
Q 043172 307 CPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVG-----REEKSLEFFEVSPD---SSVIAFVGN------- 371 (564)
Q Consensus 307 ~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~-----~~~~~v~~~~~spd---g~~la~~~~------- 371 (564)
.....|+|.|+|+.+++-...+.|++++..++....+..+.. .....+..++|+|+ +..|+++..
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 345799999999866654333578888876665543332221 12235789999996 555555442
Q ss_pred ------CCeEEEEECCCC--c-----EEE-Eee--ecCcEEEEEEecCCCEEEEEeC
Q 043172 372 ------EGYILLVSSKTK--E-----LIG-TLK--MNGTVRSLAFADDGKQLLSSGG 412 (564)
Q Consensus 372 ------dg~I~lwd~~t~--~-----~~~-~~~--~~~~V~~l~~spdg~~l~s~s~ 412 (564)
...|.-|++... . .+. .+. .......|+|.|+|.++++.+.
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 235666665322 1 111 122 1234789999999987776553
No 319
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.77 E-value=0.00018 Score=79.63 Aligned_cols=228 Identities=11% Similarity=0.013 Sum_probs=129.5
Q ss_pred CCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEe-CCCeEEEEECCC----CceeeeccccccCCcceEEE
Q 043172 283 DRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAG-RRKFFYSLDLVK----AKADKIGPLVGREEKSLEFF 357 (564)
Q Consensus 283 dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~-~dg~i~iwdl~~----~~~~~~~~~~~~~~~~v~~~ 357 (564)
.+.|++.++.+.. . ..+......+..++|.+.+..|+.+. ..+.|+.+++.+ ..... +..........+
T Consensus 385 ~~~I~~id~~~~~--~-~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~---~i~~~~~~P~gl 458 (699)
T 1n7d_A 385 RHEVRKMTLDRSE--Y-TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT---VISRDIQAPDGL 458 (699)
T ss_dssp TTC-CEECTTSCC--E-ECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCC---BCCSCC--CCCE
T ss_pred ccceEEEeCCCCc--c-eeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEE---EEeCCCCCcceE
Confidence 3567777665432 1 11111223567899999877777765 457899999875 22111 111111134568
Q ss_pred EEcCCCCEEEEE-eCCCeEEEEECCCCcEEEEee-ecCcEEEEEEecCCCEEEEEeC--CCeEEEEECCCCceeEEEeec
Q 043172 358 EVSPDSSVIAFV-GNEGYILLVSSKTKELIGTLK-MNGTVRSLAFADDGKQLLSSGG--DGQVYHWDLRTRTCIHRAVDE 433 (564)
Q Consensus 358 ~~spdg~~la~~-~~dg~I~lwd~~t~~~~~~~~-~~~~V~~l~~spdg~~l~s~s~--dg~V~lwD~~~~~~~~~~~~~ 433 (564)
++.+.+..|+++ ...+.|.++++........+. .......|++.|.+.+|+.+.. .+.|+++++.... ...+...
T Consensus 459 avD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~~~l~~~ 537 (699)
T 1n7d_A 459 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTE 537 (699)
T ss_dssp ECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-CCEESCS
T ss_pred EEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-eeEEEeC
Confidence 888655444444 456889999987655443333 2245678899996655555442 2678888876432 2223222
Q ss_pred CCcceEEEEECCCCC-EEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEE
Q 043172 434 GCINGTALCTSPDGT-FFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIH 512 (564)
Q Consensus 434 ~~~~i~~l~~sp~g~-~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwd 512 (564)
.......|+|+|++. ++++-+..+.|.++++... ....+............|++..+ .|+.+.. ..+.|..++
T Consensus 538 ~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~---~~~~~~~~~~~~~~P~glavd~~--~lywtd~-~~~~V~~~d 611 (699)
T 1n7d_A 538 NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG---NRKTILEDEKRLAHPFSLAVFED--KVFWTDI-INEAIFSAN 611 (699)
T ss_dssp SCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSS---CCEEECCCSSSCSSCCCCEEETT--EEEEECS-TTTCEEEEE
T ss_pred CCCCccEEEEeccCCEEEEEecCCCeEEEEccCCC---ceEEEEecCCcCCCceEeEEECC--EEEEEeC-CCCeEEEEE
Confidence 222346799998755 4555566788999998742 11222211111233445566443 4554443 278999999
Q ss_pred cCCCceeccCC
Q 043172 513 IPSYNVFSNWP 523 (564)
Q Consensus 513 l~s~~~~~~~~ 523 (564)
..+++....+.
T Consensus 612 ~~~G~~~~~i~ 622 (699)
T 1n7d_A 612 RLTGSDVNLLA 622 (699)
T ss_dssp TTTEEEEECCC
T ss_pred ccCCCceEEee
Confidence 87777665543
No 320
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.77 E-value=0.0056 Score=61.60 Aligned_cols=228 Identities=8% Similarity=0.046 Sum_probs=123.1
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEE----EeCCcCeEEEEEeeC---CCEEEEEe-C-------CC
Q 043172 264 PINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSI----FLEDCPVRKASFLPD---GSQAIIAG-R-------RK 328 (564)
Q Consensus 264 ~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~----~~~~~~I~~l~fspd---g~~l~s~~-~-------dg 328 (564)
....|+|.|+|+.|+++...|.|++++.++.....+..+ .........++|+|+ +.+|+++. . ..
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~ 98 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGT 98 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCcee
Confidence 468999999999344555678898887543211111111 112345688999996 55666553 2 23
Q ss_pred eEEEEECCCC--cee---ee-ccccc--cCCcceEEEEEcCCCCEEEEEeC-------------CCeEEEEECCCCc---
Q 043172 329 FFYSLDLVKA--KAD---KI-GPLVG--REEKSLEFFEVSPDSSVIAFVGN-------------EGYILLVSSKTKE--- 384 (564)
Q Consensus 329 ~i~iwdl~~~--~~~---~~-~~~~~--~~~~~v~~~~~spdg~~la~~~~-------------dg~I~lwd~~t~~--- 384 (564)
.|..|++..+ ... .+ ..+.. ........++|.|+|.++++.+. .|.|.-++....-
T Consensus 99 ~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~ 178 (353)
T 2g8s_A 99 AVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDD 178 (353)
T ss_dssp EEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTT
T ss_pred EEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCC
Confidence 5666776543 111 11 11211 01112357999999976666543 2568777765320
Q ss_pred ---------EEEEee-ecCcEEEEEEec-CCCEEEEEeCC--C--eEEEEECCCCc------------------------
Q 043172 385 ---------LIGTLK-MNGTVRSLAFAD-DGKQLLSSGGD--G--QVYHWDLRTRT------------------------ 425 (564)
Q Consensus 385 ---------~~~~~~-~~~~V~~l~~sp-dg~~l~s~s~d--g--~V~lwD~~~~~------------------------ 425 (564)
....+. .-.....++|+| +|. |+++... + .|.+ +..+.
T Consensus 179 npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~-l~~~d~g~~~~dei~~--i~~G~nyGwp~~~~~~~~~~~~~~~~~~~ 255 (353)
T 2g8s_A 179 NPFIKESGVRAEIWSYGIRNPQGMAMNPWSNA-LWLNEHGPRGGDEINI--PQKGKNYGWPLATWGINYSGFKIPEAKGE 255 (353)
T ss_dssp CTTTTSTTSCTTEEEECCSEEEEEEEETTTTE-EEEEEECSBSCEEEEC--CCTTCBCCTTTBCSSBCTTSSCCTTCCBS
T ss_pred CCCcCCCCCCccEEEEcCcCccceEEECCCCC-EEEEecCCCCCcEEeE--eccCCcCCCCCccCCCCCCCCccCcccCC
Confidence 111121 223578999999 555 4444322 1 2322 11111
Q ss_pred -------eeEEEeecCCcceEEEEECC-------CCCEEEEEeCCCcEEEEeCCcccCCcceeeEE---ccccccceeEE
Q 043172 426 -------CIHRAVDEGCINGTALCTSP-------DGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKT---IENLTTKVDFM 488 (564)
Q Consensus 426 -------~~~~~~~~~~~~i~~l~~sp-------~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~---~~~~~~~I~~l 488 (564)
.+..+. +......++|.. +|.++++....+.|...++... +.+.. +......+..|
T Consensus 256 ~~~~~~~P~~~~~--~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~-----~~~~~~~~~~~~~~rp~~v 328 (353)
T 2g8s_A 256 IVAGTEQPVFYWK--DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGD-----KVTEDGRILTDRGQRIRDV 328 (353)
T ss_dssp SCTTSCCCSEEES--SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETT-----EEEEEEEESGGGCCCEEEE
T ss_pred CCCCccCCeEEeC--CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCC-----eEeeeEEcccCCCCceeEE
Confidence 111111 122456677753 4667777667788888877643 22221 22334578899
Q ss_pred EEcCCCcEEEEEe
Q 043172 489 KFNNDAQILAICS 501 (564)
Q Consensus 489 ~fspdg~~La~~s 501 (564)
++.|||.++++..
T Consensus 329 ~~~pdG~lyv~td 341 (353)
T 2g8s_A 329 RTGPDGYLYVLTD 341 (353)
T ss_dssp EECTTSCEEEEEC
T ss_pred EECCCCcEEEEEe
Confidence 9999998665443
No 321
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.77 E-value=0.02 Score=57.14 Aligned_cols=236 Identities=11% Similarity=0.084 Sum_probs=127.4
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEE----EeCCcCeEEEEEeeC---CCEEEEE---eCCCeEEE
Q 043172 263 GPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSI----FLEDCPVRKASFLPD---GSQAIIA---GRRKFFYS 332 (564)
Q Consensus 263 ~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~----~~~~~~I~~l~fspd---g~~l~s~---~~dg~i~i 332 (564)
...+.|+|.|+|.++++--..|.|++++........+..+ .........|+|+|+ +.+|+++ .....|.-
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R 111 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR 111 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence 4578999999999777765589898886543322222222 123456789999995 4455543 23456777
Q ss_pred EECCCCc--------eeee-ccccccCCcceEEEEEcCCCCEEEEEeC-------------CCeEEEEECCCC-------
Q 043172 333 LDLVKAK--------ADKI-GPLVGREEKSLEFFEVSPDSSVIAFVGN-------------EGYILLVSSKTK------- 383 (564)
Q Consensus 333 wdl~~~~--------~~~~-~~~~~~~~~~v~~~~~spdg~~la~~~~-------------dg~I~lwd~~t~------- 383 (564)
|.+..+. ...+ ..+..........+.|.|+|.++++.+. .|.|.-++....
T Consensus 112 ~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf 191 (347)
T 3das_A 112 MLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPF 191 (347)
T ss_dssp EEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSS
T ss_pred EEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCC
Confidence 7765521 1111 1121111123457999999987777542 356666665432
Q ss_pred --cEEEEeeecCcEEEEEEecCCCEEEEEe-CCCeEEEEECCCCc------------------eeEEEeecCCcceEEEE
Q 043172 384 --ELIGTLKMNGTVRSLAFADDGKQLLSSG-GDGQVYHWDLRTRT------------------CIHRAVDEGCINGTALC 442 (564)
Q Consensus 384 --~~~~~~~~~~~V~~l~~spdg~~l~s~s-~dg~V~lwD~~~~~------------------~~~~~~~~~~~~i~~l~ 442 (564)
..+...-+ .....++|+|+|.++++-. .++.-.|--+..+. .+..+...+ .....++
T Consensus 192 ~~~~i~a~G~-RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~-~ap~G~~ 269 (347)
T 3das_A 192 PGSPVYSYGH-RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDE-ASPSGIA 269 (347)
T ss_dssp TTCCEEEBCC-SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTT-CCEEEEE
T ss_pred CCCeEEeeCC-CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCC-CCCcceE
Confidence 11222222 3466899999877554432 22212222222221 122222111 2345666
Q ss_pred ECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEec
Q 043172 443 TSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICST 502 (564)
Q Consensus 443 ~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~ 502 (564)
|. .|..++..-..+.|....+.... ....+...+.+....+..|+..|||.++++...
T Consensus 270 ~~-~g~~~~~~l~~~~l~~v~~~~~~-~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td~ 327 (347)
T 3das_A 270 YA-EGSVWMAGLRGERLWRIPLKGTA-AAADPQAFLEGEYGRLRTVAPAGGDKLWLVTSN 327 (347)
T ss_dssp EE-TTEEEEEESTTCSEEEEEEETTE-ESSCCEEESTTTSSCEEEEEEEETTEEEEEECT
T ss_pred EE-cCceeeccccCCEEEEEEecCCc-eecceEEeecCCCCCccEEEECCCCcEEEEEcC
Confidence 65 45555555556666666665430 001222334444568899999999987766553
No 322
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.69 E-value=0.015 Score=63.02 Aligned_cols=223 Identities=11% Similarity=-0.008 Sum_probs=127.8
Q ss_pred CCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeC-CCeEEEEECCCCcE-EEEee-ecCcEEEEEEec
Q 043172 326 RRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGN-EGYILLVSSKTKEL-IGTLK-MNGTVRSLAFAD 402 (564)
Q Consensus 326 ~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~-dg~I~lwd~~t~~~-~~~~~-~~~~V~~l~~sp 402 (564)
....|+..++............+. ..+..++|++.+..|+.+.. .+.|..+++..... ...+. .-..+..+++.+
T Consensus 16 ~~~~I~~i~~~~~~~~~~~~~~~~--~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~ 93 (619)
T 3s94_A 16 NRRDLRLVDATNGKENATIVVGGL--EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDW 93 (619)
T ss_dssp CSSBEEEECCC---------CBCC--SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEET
T ss_pred ccccEEEEeCCCCcceEEEEEcCC--CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEe
Confidence 356788888876531111112222 24778999997777776654 57899999876532 22222 225789999999
Q ss_pred CCCEEEEE-eCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEe--CCCcEEEEeCCcccCCcceeeEEcc
Q 043172 403 DGKQLLSS-GGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGS--DSGIVNVYNRQEFLGGKRKPIKTIE 479 (564)
Q Consensus 403 dg~~l~s~-s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs--~dg~V~iwd~~~~~~~~~~~~~~~~ 479 (564)
.+..|+.+ ...+.|.+.++..... ..+..........|++.|.+.+|+... ..+.|...++... .....+.
T Consensus 94 ~~~~ly~~d~~~~~I~v~~~dG~~~-~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~-----~~~~l~~ 167 (619)
T 3s94_A 94 LGEKLYWTDSETNRIEVSNLDGSLR-KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS-----SRFIIIN 167 (619)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSC-----SCEEEEC
T ss_pred cCCEEEEEeCCCCEEEEEECCCCCE-EEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCC-----ceEEEEe
Confidence 66555554 4578999999975443 333322223456899999765555443 2467777776642 1222222
Q ss_pred ccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEE-cCCCeEEEEEc
Q 043172 480 NLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVG-NAAGKVFLYKL 558 (564)
Q Consensus 480 ~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasg-s~dG~V~lw~l 558 (564)
......+.|++.+++..|+.+... .+.|..+++.......... .......+|++..+ .|+.+ ...+.|...+.
T Consensus 168 ~~~~~P~Glald~~~~~LY~aD~~-~~~I~~~~~dG~~~~~~~~---~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~ 241 (619)
T 3s94_A 168 SEIYWPNGLTLDYEEQKLYWADAK-LNFIHKSNLDGTNRQAVVK---GSLPHPFALTLFED--ILYWTDWSTHSILACNK 241 (619)
T ss_dssp SSCSSEEEEEEETTTTEEEEEETT-TCCEEEESSSCCEEC------------CCCEEESSS--EEEEECTTTCSEEEEES
T ss_pred CCCCCCcEEEEEccCCEEEEEeCC-CCeEEEecCCCCccEEEEe---CCCCCceEEEEeCC--EEEEecCCCCEEEEEEC
Confidence 234567899999988888777654 6789988886543322211 11233456777655 44444 45667877776
Q ss_pred CCCC
Q 043172 559 NHYH 562 (564)
Q Consensus 559 ~~~~ 562 (564)
.+.+
T Consensus 242 ~tg~ 245 (619)
T 3s94_A 242 YTGE 245 (619)
T ss_dssp SSCC
T ss_pred CCCc
Confidence 5543
No 323
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.69 E-value=0.096 Score=56.83 Aligned_cols=197 Identities=8% Similarity=-0.048 Sum_probs=127.5
Q ss_pred CCeeEEEEcCCCCEEEEE-eCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEe-CCCeEEEEECCCCce
Q 043172 263 GPINSVQFHRNAQLLLVA-GLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAG-RRKFFYSLDLVKAKA 340 (564)
Q Consensus 263 ~~V~~l~fspdg~~l~s~-s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~-~dg~i~iwdl~~~~~ 340 (564)
..+..|+|++....|+.+ ..++.|..+++++.... ..+.........+++.+.+..|+.+. ..+.|.+.++.....
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~--~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~ 114 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALE--HVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR 114 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE--EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTC
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcE--EEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcE
Confidence 468899999976665554 45788988888764322 22222224567899988777776664 567899999876543
Q ss_pred eeeccccccCCcceEEEEEcCCCCEEEEEeC--CCeEEEEECCCCcEEEEeeecCcEEEEEEecCCCEEEEEe-CCCeEE
Q 043172 341 DKIGPLVGREEKSLEFFEVSPDSSVIAFVGN--EGYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSG-GDGQVY 417 (564)
Q Consensus 341 ~~~~~~~~~~~~~v~~~~~spdg~~la~~~~--dg~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s-~dg~V~ 417 (564)
..+.. . .......+++.|...+|+.+.. .+.|...++........+..-.....|++.+++..|+.+. ..+.|.
T Consensus 115 ~~l~~--~-~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~ 191 (628)
T 4a0p_A 115 QVLVW--K-DLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIE 191 (628)
T ss_dssp EEEEC--S-SCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEE
T ss_pred EEEEe--C-CCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEE
Confidence 22211 1 1224689999997666766653 5788888887655443334445788999999877777664 467899
Q ss_pred EEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcc
Q 043172 418 HWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEF 467 (564)
Q Consensus 418 lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~ 467 (564)
.+|+..... ..+.... .....+++.. +..+++-...+.|...|..++
T Consensus 192 ~~d~dG~~~-~v~~~~l-~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 192 SSNMLGLNR-EVIADDL-PHPFGLTQYQ-DYIYWTDWSRRSIERANKTSG 238 (628)
T ss_dssp EEETTSCSC-EEEEECC-SCEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred EEcCCCCce-EEeeccC-CCceEEEEEC-CEEEEecCCCCEEEEEECCCC
Confidence 999975433 2333222 2345677754 455555556788888886554
No 324
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.66 E-value=0.0047 Score=61.99 Aligned_cols=183 Identities=11% Similarity=0.167 Sum_probs=110.7
Q ss_pred eEEEEEcCCCCEEEEEe------------CCCeEEEEECCC--CcEEEEeee--------cCcEEEEEEec--CCC-EEE
Q 043172 354 LEFFEVSPDSSVIAFVG------------NEGYILLVSSKT--KELIGTLKM--------NGTVRSLAFAD--DGK-QLL 408 (564)
Q Consensus 354 v~~~~~spdg~~la~~~------------~dg~I~lwd~~t--~~~~~~~~~--------~~~V~~l~~sp--dg~-~l~ 408 (564)
...+.+.|+|..+++++ .+|.|.++|+.+ ++. ..+.. ......+.+.+ ++. +|+
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~-~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV-SELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCE-EECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCce-EEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 45677888775555542 689999999874 332 33332 13678888877 354 455
Q ss_pred EEeC---CCeEEEEECCCC--ce--eEEEeecCCcceEEEEECCCCCEEEEEeC-----------------CCcEEEEeC
Q 043172 409 SSGG---DGQVYHWDLRTR--TC--IHRAVDEGCINGTALCTSPDGTFFAAGSD-----------------SGIVNVYNR 464 (564)
Q Consensus 409 s~s~---dg~V~lwD~~~~--~~--~~~~~~~~~~~i~~l~~sp~g~~lasgs~-----------------dg~V~iwd~ 464 (564)
++.. +.+|.+|++... .. +..+....-.....+++.++|+++++... .|.|..|+.
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~ 210 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 210 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence 5532 457777776543 22 22333333335688999999987776541 244544443
Q ss_pred CcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCC-Cce--eccCCCCCCCCCCcEEEEEeC-C
Q 043172 465 QEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPS-YNV--FSNWPPANRNLQYPRCLDFSP-G 540 (564)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s-~~~--~~~~~~~~~~~~~V~~l~fsp-d 540 (564)
. + +..+...-...+.++|+||++.|+++... .+.|..|++.. ++. ...+.. .+.+-.+++.+ +
T Consensus 211 ~-------~-~~~~~~~l~~pNGia~spDg~~lYvadt~-~~~I~~~~~~~~g~l~~~~~~~~----~g~PDGi~vD~e~ 277 (355)
T 3sre_A 211 N-------D-VRVVAEGFDFANGINISPDGKYVYIAELL-AHKIHVYEKHANWTLTPLRVLSF----DTLVDNISVDPVT 277 (355)
T ss_dssp T-------C-CEEEEEEESSEEEEEECTTSSEEEEEEGG-GTEEEEEEECTTSCEEEEEEEEC----SSEEEEEEECTTT
T ss_pred C-------e-EEEeecCCcccCcceECCCCCEEEEEeCC-CCeEEEEEECCCCcEecCEEEeC----CCCCceEEEeCCC
Confidence 2 1 12222223456889999999998887764 68999999863 322 122211 25678899999 5
Q ss_pred CCEEEEEcCC
Q 043172 541 GGFMAVGNAA 550 (564)
Q Consensus 541 g~~Lasgs~d 550 (564)
|.+.+++..+
T Consensus 278 G~lwva~~~~ 287 (355)
T 3sre_A 278 GDLWVGCHPN 287 (355)
T ss_dssp CCEEEEEESC
T ss_pred CcEEEEecCC
Confidence 9887766533
No 325
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.64 E-value=0.0084 Score=58.76 Aligned_cols=229 Identities=11% Similarity=0.050 Sum_probs=121.7
Q ss_pred CCCEEEEEeC----CCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeC----C-----CeEEEEECCCC
Q 043172 317 DGSQAIIAGR----RKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGN----E-----GYILLVSSKTK 383 (564)
Q Consensus 317 dg~~l~s~~~----dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~----d-----g~I~lwd~~t~ 383 (564)
++..++.||. -..+.+||+.+.+...+..++.... ....+. .++.++++|+. + ..+.+||+.+.
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~-~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~ 100 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRS-GLAGCV--VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTN 100 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCB-SCEEEE--ETTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccc-cceEEE--ECCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence 4555566653 2468899999888766544433222 112222 25677777765 2 46889999988
Q ss_pred cEEEEeeec---CcEEEEEEecCCCEEEEEeCC-----CeEEEEECCCCceeEEEeecC-CcceEEEEECCCCCEEEEEe
Q 043172 384 ELIGTLKMN---GTVRSLAFADDGKQLLSSGGD-----GQVYHWDLRTRTCIHRAVDEG-CINGTALCTSPDGTFFAAGS 454 (564)
Q Consensus 384 ~~~~~~~~~---~~V~~l~~spdg~~l~s~s~d-----g~V~lwD~~~~~~~~~~~~~~-~~~i~~l~~sp~g~~lasgs 454 (564)
++...-... .....+.+ ++++++.|+.+ ..+.+||+.+.+-...-.... ......+.+ ++.+++.|+
T Consensus 101 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG 176 (308)
T 1zgk_A 101 QWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGG 176 (308)
T ss_dssp EEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECC
T ss_pred eEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeC
Confidence 776543211 11122222 56666666543 368899998765432211111 111122222 567777776
Q ss_pred CC-----CcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCC---CCeEEEEEcCCCceeccCCCCC
Q 043172 455 DS-----GIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMK---KNSLKLIHIPSYNVFSNWPPAN 526 (564)
Q Consensus 455 ~d-----g~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~---d~~I~lwdl~s~~~~~~~~~~~ 526 (564)
.+ ..+.+||+.+. ....+..+.........+.+ ++.++++|+... -..+.+||+.+.+-.. ++...
T Consensus 177 ~~~~~~~~~~~~yd~~~~---~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~-~~~~p 250 (308)
T 1zgk_A 177 FDGTNRLNSAECYYPERN---EWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTF-VAPMK 250 (308)
T ss_dssp BCSSCBCCCEEEEETTTT---EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEE-CCCCS
T ss_pred CCCCCcCceEEEEeCCCC---eEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEE-CCCCC
Confidence 54 45889998763 22322222221222222333 677777776521 1568999988764332 12111
Q ss_pred CCCCCcEEEEEeCCCCEEEEEcCC-----CeEEEEEcCC
Q 043172 527 RNLQYPRCLDFSPGGGFMAVGNAA-----GKVFLYKLNH 560 (564)
Q Consensus 527 ~~~~~V~~l~fspdg~~Lasgs~d-----G~V~lw~l~~ 560 (564)
.+......+. -++.+++.|+.+ ..|.+||+.+
T Consensus 251 ~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~ 287 (308)
T 1zgk_A 251 HRRSALGITV--HQGRIYVLGGYDGHTFLDSVECYDPDT 287 (308)
T ss_dssp SCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTT
T ss_pred CCccceEEEE--ECCEEEEEcCcCCCcccceEEEEcCCC
Confidence 1112222222 266777887754 3577888754
No 326
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.62 E-value=0.0078 Score=59.19 Aligned_cols=211 Identities=13% Similarity=0.117 Sum_probs=109.5
Q ss_pred CeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeC-----C------CeEEEEECCCCcEEEEeeecCcE-
Q 043172 328 KFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGN-----E------GYILLVSSKTKELIGTLKMNGTV- 395 (564)
Q Consensus 328 g~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~-----d------g~I~lwd~~t~~~~~~~~~~~~V- 395 (564)
..+.+||..+++... ..+..... .........++.++++|+. . ..+.+||+.+.++...-....+-
T Consensus 13 ~~~~~yd~~~~~W~~-~~~~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~ 90 (315)
T 4asc_A 13 EGAVAYDPAANECYC-ASLSSQVP-KNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRC 90 (315)
T ss_dssp TEEEEEETTTTEEEE-EECCCCSC-SSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEE
T ss_pred CceEEECCCCCeEec-CCCCCCCC-ccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchh
Confidence 579999999988653 33322212 1223334457788888873 1 23888999998875432222111
Q ss_pred -EEEEEecCCCEEEEEeCC--------CeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeC------CCcEE
Q 043172 396 -RSLAFADDGKQLLSSGGD--------GQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSD------SGIVN 460 (564)
Q Consensus 396 -~~l~~spdg~~l~s~s~d--------g~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~------dg~V~ 460 (564)
.+++.. ++..++.|+.+ ..+.+||+.+.+-...-.........+++. .+++.++.|+. -..+.
T Consensus 91 ~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~ 168 (315)
T 4asc_A 91 LFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSDRKCLNKMC 168 (315)
T ss_dssp SCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCTTSCBCCCEE
T ss_pred ceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCCCCcccceEE
Confidence 112222 56666666632 458999998765332111111111122222 35667777765 24688
Q ss_pred EEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCC---CeEEEEEcCCCceeccCCCCCCCCCCcEEEEE
Q 043172 461 VYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKK---NSLKLIHIPSYNVFSNWPPANRNLQYPRCLDF 537 (564)
Q Consensus 461 iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d---~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~f 537 (564)
+||..+. ....+..+.........+. -+++++++|+.... +.+.+||+.+.+-... +....+.....++.
T Consensus 169 ~yd~~~~---~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~~~~~~- 241 (315)
T 4asc_A 169 VYDPKKF---EWKELAPMQTARSLFGATV--HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPF-EAFPQERSSLSLVS- 241 (315)
T ss_dssp EEETTTT---EEEECCCCSSCCBSCEEEE--ETTEEEEEEEECSSSEEEEEEEEETTTTEEEEE-CCCSSCCBSCEEEE-
T ss_pred EEeCCCC---eEEECCCCCCchhceEEEE--ECCEEEEEeccCCCCccceEEEEECCCCeEEEC-CCCCCcccceeEEE-
Confidence 9998763 2233322221111122222 26777888776322 2578888877543222 11111112222332
Q ss_pred eCCCCEEEEEcCC
Q 043172 538 SPGGGFMAVGNAA 550 (564)
Q Consensus 538 spdg~~Lasgs~d 550 (564)
-++.+++.|+.+
T Consensus 242 -~~~~l~v~GG~~ 253 (315)
T 4asc_A 242 -LVGTLYAIGGFA 253 (315)
T ss_dssp -ETTEEEEEEEEE
T ss_pred -ECCEEEEECCcc
Confidence 266777777754
No 327
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.61 E-value=0.012 Score=58.01 Aligned_cols=231 Identities=12% Similarity=0.117 Sum_probs=119.0
Q ss_pred EEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeC----CC-------eEEEEECCCCceeeec
Q 043172 276 LLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGR----RK-------FFYSLDLVKAKADKIG 344 (564)
Q Consensus 276 ~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~----dg-------~i~iwdl~~~~~~~~~ 344 (564)
+++.|+. .+..||....+... ..+..........+...++..++.||. ++ .+.+||..+.+...+.
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~-~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 94 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYL-TALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLP 94 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEE-EEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECS
T ss_pred hhhcccc--ceEEECCCCCceec-ccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECC
Confidence 4455543 37778776443322 122211112223333456777777773 11 2788999998876665
Q ss_pred cccccCCcceEEEEEcCCCCEEEEEeCC-------CeEEEEECCCCcEEEEeeecCcEE-EEEEecCCCEEEEEeC----
Q 043172 345 PLVGREEKSLEFFEVSPDSSVIAFVGNE-------GYILLVSSKTKELIGTLKMNGTVR-SLAFADDGKQLLSSGG---- 412 (564)
Q Consensus 345 ~~~~~~~~~v~~~~~spdg~~la~~~~d-------g~I~lwd~~t~~~~~~~~~~~~V~-~l~~spdg~~l~s~s~---- 412 (564)
.++.... ....+.+ ++.++++|+.+ ..+.+||+.+.++...-....+.. ..+...++++++.|+.
T Consensus 95 ~~p~~r~-~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~ 171 (318)
T 2woz_A 95 PLPSARC-LFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDK 171 (318)
T ss_dssp CBSSCBC-SCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSS
T ss_pred CCCcccc-ccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCC
Confidence 4443222 1222222 57777777753 358899999888765433221111 1111236666666654
Q ss_pred --CCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCC-----CcEEEEeCCcccCCcceeeEEccccccce
Q 043172 413 --DGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDS-----GIVNVYNRQEFLGGKRKPIKTIENLTTKV 485 (564)
Q Consensus 413 --dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~d-----g~V~iwd~~~~~~~~~~~~~~~~~~~~~I 485 (564)
-..+.+||+.+.+-...-.........+++. -++++++.|+.+ ..+.+||+.+. ....+..+.......
T Consensus 172 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~---~W~~~~~~p~~r~~~ 247 (318)
T 2woz_A 172 KCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTN---KWEVMTEFPQERSSI 247 (318)
T ss_dssp CBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTC---CEEECCCCSSCCBSC
T ss_pred CccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCC---eEEECCCCCCcccce
Confidence 2359999998875433211111111112222 256777777643 35778988763 223333222222222
Q ss_pred eEEEEcCCCcEEEEEecCC------------CCeEEEEEcCCCce
Q 043172 486 DFMKFNNDAQILAICSTMK------------KNSLKLIHIPSYNV 518 (564)
Q Consensus 486 ~~l~fspdg~~La~~s~~~------------d~~I~lwdl~s~~~ 518 (564)
..+ ..+++++++|+... -+.+.+||+.+.+-
T Consensus 248 ~~~--~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W 290 (318)
T 2woz_A 248 SLV--SLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEW 290 (318)
T ss_dssp EEE--EETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEE
T ss_pred EEE--EECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEe
Confidence 222 23567777766421 24577888876543
No 328
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.61 E-value=0.13 Score=59.80 Aligned_cols=278 Identities=15% Similarity=0.152 Sum_probs=154.5
Q ss_pred CeeEEEEcC--CCCEEEEEeCCCcEEEEEecCCCCceeE--EEEeCCcCeEEEEEeeCCCE-EEEEeCCCeEEEEECCCC
Q 043172 264 PINSVQFHR--NAQLLLVAGLDRRLRFFQIDGKRNTKIQ--SIFLEDCPVRKASFLPDGSQ-AIIAGRRKFFYSLDLVKA 338 (564)
Q Consensus 264 ~V~~l~fsp--dg~~l~s~s~dg~I~lwd~~~~~~~~~~--~~~~~~~~I~~l~fspdg~~-l~s~~~dg~i~iwdl~~~ 338 (564)
...++.+.. ...+|..|-.||.+.-+.++..++.... .......|+.-..|...|.. ++++|... ..+|.-. +
T Consensus 605 ~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp-~liy~~~-~ 682 (1158)
T 3ei3_A 605 IPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRP-TVIYSSN-H 682 (1158)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSC-EEEEESS-S
T ss_pred CCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCC-EEEEEcC-C
Confidence 344444432 3467888889999888887654333322 22333456655555544443 44444444 4444433 3
Q ss_pred ceeeeccccccCCcceEEEEEcCC--CCEEEEEeCCCeEEEEECCCC--cEEEEeeecCcEEEEEEecCCCEEEEEeCC-
Q 043172 339 KADKIGPLVGREEKSLEFFEVSPD--SSVIAFVGNEGYILLVSSKTK--ELIGTLKMNGTVRSLAFADDGKQLLSSGGD- 413 (564)
Q Consensus 339 ~~~~~~~~~~~~~~~v~~~~~spd--g~~la~~~~dg~I~lwd~~t~--~~~~~~~~~~~V~~l~~spdg~~l~s~s~d- 413 (564)
+. ....+.... .-....|+.. ..-++..+ ++.++|..+... -.+..+.....+..++++|..+.++++..+
T Consensus 683 ~l-~~s~l~~~~--v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~ 758 (1158)
T 3ei3_A 683 KL-VFSNVNLKE--VNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRI 758 (1158)
T ss_dssp SE-EEEEBSSSC--CCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEE
T ss_pred ce-EEeccChHH--hceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEec
Confidence 32 222222221 1123344332 23344443 355888776533 234455567788999999977765544311
Q ss_pred ------------------------------------------------CeEEEEECCCCceeEEEeecCCcceEEEEE--
Q 043172 414 ------------------------------------------------GQVYHWDLRTRTCIHRAVDEGCINGTALCT-- 443 (564)
Q Consensus 414 ------------------------------------------------g~V~lwD~~~~~~~~~~~~~~~~~i~~l~~-- 443 (564)
+.|++.|..+.+.+..+.....-.+.+++.
T Consensus 759 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~ 838 (1158)
T 3ei3_A 759 EVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCK 838 (1158)
T ss_dssp EEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEEC
T ss_pred cccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEE
Confidence 247778887777777666555445555553
Q ss_pred -CCC-CCEEEEEe----------CCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEE
Q 043172 444 -SPD-GTFFAAGS----------DSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLI 511 (564)
Q Consensus 444 -sp~-g~~lasgs----------~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lw 511 (564)
..+ ..+|++|+ ..|.|.+|++.. ...+.++... ..++|++|+-- +| +|++|. ...|++|
T Consensus 839 ~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~---~kL~lv~~~~-v~g~v~al~~~-~g-~Lla~i---g~~l~vy 909 (1158)
T 3ei3_A 839 LGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSD---GKLQTVAEKE-VKGAVYSMVEF-NG-KLLASI---NSTVRLY 909 (1158)
T ss_dssp CTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEET---TEEEEEEEEE-ESSCEEEEEEE-TT-EEEEEE---TTEEEEE
T ss_pred EccCCCEEEEEEeeecCCCCCCCCceEEEEEEEEC---CEEEEEEEEE-cCCcCEEEeee-CC-EEEEEc---CCEEEEE
Confidence 222 46899886 357899999863 2223343333 46778887643 35 555555 4789999
Q ss_pred EcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q 043172 512 HIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLN 559 (564)
Q Consensus 512 dl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~ 559 (564)
++...+.+. ... .....|..+.....+.++++|..-..|.++..+
T Consensus 910 ~l~~~~~L~-~~~--~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~ 954 (1158)
T 3ei3_A 910 EWTTEKELR-TEC--NHYNNIMALYLKTKGDFILVGDLMRSVLLLAYK 954 (1158)
T ss_dssp EECTTSCEE-EEE--EECCCSCEEEEEEETTEEEEEESSBCEEEEEEE
T ss_pred ECCCCceEE-EEe--eccccEEEEEEeccCCEEEEEEhhheEEEEEEE
Confidence 997654333 100 001123344444467889999877777776543
No 329
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.56 E-value=0.017 Score=56.56 Aligned_cols=200 Identities=8% Similarity=0.085 Sum_probs=118.8
Q ss_pred EeeCCCEEEEEe--CCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCC--------------CeEEE
Q 043172 314 FLPDGSQAIIAG--RRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNE--------------GYILL 377 (564)
Q Consensus 314 fspdg~~l~s~~--~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d--------------g~I~l 377 (564)
|+++|.+|+... .++.|+..+.......++.. -.+--++++|.+|+.+... ..|+.
T Consensus 21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~--------~~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~ 92 (302)
T 3s25_A 21 FCESDGEVFFSNTNDNGRLYAMNIDGSNIHKLSN--------DTAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCR 92 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEEETTSCSCEEEEE--------EEEEEEEECSSEEEEEEECC------CCSSCCSEEEEE
T ss_pred EEEeCCEEEEEeCCCCceEEEEcCCCCCCEEccC--------CceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEE
Confidence 446777888775 35678888877666544321 1233457889998887653 47888
Q ss_pred EECCCCcEEEEeeecCcEEEEEEecCCCEEEEEe----CCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEE
Q 043172 378 VSSKTKELIGTLKMNGTVRSLAFADDGKQLLSSG----GDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAG 453 (564)
Q Consensus 378 wd~~t~~~~~~~~~~~~V~~l~~spdg~~l~s~s----~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasg 453 (564)
.++..++..... ... +..|++++..|+-.. ....|+..++.... ..++..... .+++++++.|+..
T Consensus 93 i~~dg~~~~~l~--~~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~-----~~~~~~g~~iy~t 162 (302)
T 3s25_A 93 IKRNGHGSTVLD--PDP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL-----FTCNTSDRYFYYN 162 (302)
T ss_dssp EETTSCCCEEEE--CSC--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC-----CCSEEETTEEEEE
T ss_pred EeCCCCcceEee--cCC--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc-----eEeeEECCEEEEE
Confidence 888777543322 222 236788888888765 34567777776433 344443322 3456788888766
Q ss_pred eC-CCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCc
Q 043172 454 SD-SGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYP 532 (564)
Q Consensus 454 s~-dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V 532 (564)
+. ...|.+.++... .....+. .... ..++|++.+|+.........|...++....... +.. ..+
T Consensus 163 ~~g~~~Iy~~~l~g~-----~~~~l~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~-Lt~-----~~~ 227 (302)
T 3s25_A 163 NPKNGQLYRYDTASQ-----SEALFYD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVV-LTE-----ANI 227 (302)
T ss_dssp CTTTCCEEEEETTTT-----EEEEEEC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCCEE-CSC-----SCE
T ss_pred eCCCceEEEEECCCC-----CEEEEeC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCeEE-EeC-----CCc
Confidence 65 567777777653 2222222 2222 346699999998876323456666665543322 211 122
Q ss_pred EEEEEeCCCCEEEEEc
Q 043172 533 RCLDFSPGGGFMAVGN 548 (564)
Q Consensus 533 ~~l~fspdg~~Lasgs 548 (564)
..|+|++.+|+.++
T Consensus 228 --~~~~~~g~~Iy~~~ 241 (302)
T 3s25_A 228 --EHYNVYGSLIFYQR 241 (302)
T ss_dssp --EEEEEETTEEEEEE
T ss_pred --ceEEECCCEEEEEE
Confidence 34788888877653
No 330
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.53 E-value=0.0061 Score=61.09 Aligned_cols=242 Identities=12% Similarity=0.047 Sum_probs=124.0
Q ss_pred CCCEEEEEeCC-CcEEEEEecC--CCCceeEEEE-eCCcCeEEEEEeeCCCEEEEEeC-C---------CeEEEEECCCC
Q 043172 273 NAQLLLVAGLD-RRLRFFQIDG--KRNTKIQSIF-LEDCPVRKASFLPDGSQAIIAGR-R---------KFFYSLDLVKA 338 (564)
Q Consensus 273 dg~~l~s~s~d-g~I~lwd~~~--~~~~~~~~~~-~~~~~I~~l~fspdg~~l~s~~~-d---------g~i~iwdl~~~ 338 (564)
++.+++.||.+ ..+.+||+.. .....+..+. ..... .+++. -++..++.||. + ..+.+||+.+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~-~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQ-ATSAF-IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBS-CEEEE-ETTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCcc-ceEEE-ECCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 66777777754 4677777753 2222222222 11111 12222 25666666665 2 46899999998
Q ss_pred ceeeeccccccCCcceEEEEEcCCCCEEEEEeCC---------------------------------------CeEEEEE
Q 043172 339 KADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNE---------------------------------------GYILLVS 379 (564)
Q Consensus 339 ~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d---------------------------------------g~I~lwd 379 (564)
+...+..+........ +++. .+++++++|+.+ ..+.+||
T Consensus 97 ~W~~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd 174 (357)
T 2uvk_A 97 SWVKLMSHAPMGMAGH-VTFV-HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFD 174 (357)
T ss_dssp EEEECSCCCSSCCSSE-EEEE-ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEE
T ss_pred cEEECCCCCCcccccc-eEEE-ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEe
Confidence 8776655441111112 2222 567788888754 5799999
Q ss_pred CCCCcEEEEeeec--CcE-EEEEEecCCCEEEEEeC------CCeEEEEEC--CCCceeEEEee--cCCcceEEEEECCC
Q 043172 380 SKTKELIGTLKMN--GTV-RSLAFADDGKQLLSSGG------DGQVYHWDL--RTRTCIHRAVD--EGCINGTALCTSPD 446 (564)
Q Consensus 380 ~~t~~~~~~~~~~--~~V-~~l~~spdg~~l~s~s~------dg~V~lwD~--~~~~~~~~~~~--~~~~~i~~l~~sp~ 446 (564)
+.+.++...-... ... .+++.. ++++++.|+. ...+.+||+ .+.+-...-.. .......+++. .+
T Consensus 175 ~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~-~~ 252 (357)
T 2uvk_A 175 PSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGI-SN 252 (357)
T ss_dssp TTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEE-ET
T ss_pred CCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEE-EC
Confidence 9998876654322 111 233332 5666666653 245778887 44332211111 11111111222 35
Q ss_pred CCEEEEEeCC----------------------CcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCC
Q 043172 447 GTFFAAGSDS----------------------GIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMK 504 (564)
Q Consensus 447 g~~lasgs~d----------------------g~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~ 504 (564)
+.+++.|+.+ ..+.+||+.+. .+..+..+......-.+ ...+++++++|+...
T Consensus 253 ~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~---~W~~~~~~p~~r~~~~~--~~~~~~i~v~GG~~~ 327 (357)
T 2uvk_A 253 DSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNG---KWDKSGELSQGRAYGVS--LPWNNSLLIIGGETA 327 (357)
T ss_dssp TEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC------CEEEEECSSCCBSSEE--EEETTEEEEEEEECG
T ss_pred CEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCC---ceeeCCCCCCCccccee--EEeCCEEEEEeeeCC
Confidence 6677777632 24778998763 33455444432222222 334778888888633
Q ss_pred C----CeEEEEEcCCCceeccCCCC
Q 043172 505 K----NSLKLIHIPSYNVFSNWPPA 525 (564)
Q Consensus 505 d----~~I~lwdl~s~~~~~~~~~~ 525 (564)
+ +.|.++++.+.+.....+.+
T Consensus 328 ~~~~~~~v~~l~~~~~~~~~~~~~~ 352 (357)
T 2uvk_A 328 GGKAVTDSVLITVKDNKVTVQNLEH 352 (357)
T ss_dssp GGCEEEEEEEEEC-CCSCEEEC---
T ss_pred CCCEeeeEEEEEEcCcEeEeeeccc
Confidence 3 24666788887776655444
No 331
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.48 E-value=0.016 Score=56.90 Aligned_cols=220 Identities=14% Similarity=0.157 Sum_probs=114.1
Q ss_pred eEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCC----C-------eEEEEECCCCcEEEEeeecCc--E
Q 043172 329 FFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNE----G-------YILLVSSKTKELIGTLKMNGT--V 395 (564)
Q Consensus 329 ~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d----g-------~I~lwd~~t~~~~~~~~~~~~--V 395 (564)
.+.+||..+.+.... .+..... .........++.++++|+.. + .+.+||..+.++...-....+ -
T Consensus 25 ~~~~yd~~~~~W~~~-~~~~~~~-r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~ 102 (318)
T 2woz_A 25 AAVAYDPMENECYLT-ALAEQIP-RNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL 102 (318)
T ss_dssp EEEEEETTTTEEEEE-EECTTSC-SSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS
T ss_pred ceEEECCCCCceecc-cCCccCC-ccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc
Confidence 488999998876542 2221111 12233345677888888731 1 278899998887654322111 1
Q ss_pred EEEEEecCCCEEEEEeCC-------CeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeC------CCcEEEE
Q 043172 396 RSLAFADDGKQLLSSGGD-------GQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSD------SGIVNVY 462 (564)
Q Consensus 396 ~~l~~spdg~~l~s~s~d-------g~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~------dg~V~iw 462 (564)
.+++.. ++.+++.|+.+ ..+.+||+.+.+-...-.........+++. .++.+++.|+. ...+.+|
T Consensus 103 ~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~y 180 (318)
T 2woz_A 103 FGLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIY 180 (318)
T ss_dssp CEEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEE
T ss_pred cceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEE
Confidence 122222 56777777753 358899998765433211111111122222 36667777753 2358999
Q ss_pred eCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCC---CeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeC
Q 043172 463 NRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKK---NSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSP 539 (564)
Q Consensus 463 d~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d---~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fsp 539 (564)
|..+. ....+..+.........+. -++.++++|+.... +.+.+||+.+.+-... +....+......+ .-
T Consensus 181 d~~~~---~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~~~~~--~~ 252 (318)
T 2woz_A 181 NPKKG---DWKDLAPMKTPRSMFGVAI--HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVM-TEFPQERSSISLV--SL 252 (318)
T ss_dssp ETTTT---EEEEECCCSSCCBSCEEEE--ETTEEEEEEEEETTEEEEEEEEEETTTCCEEEC-CCCSSCCBSCEEE--EE
T ss_pred cCCCC---EEEECCCCCCCcccceEEE--ECCEEEEEcCcCCCCccceEEEEECCCCeEEEC-CCCCCcccceEEE--EE
Confidence 98764 2233322221111122222 26777777765322 3577888876543221 1111111222222 23
Q ss_pred CCCEEEEEcCC--------------CeEEEEEcCC
Q 043172 540 GGGFMAVGNAA--------------GKVFLYKLNH 560 (564)
Q Consensus 540 dg~~Lasgs~d--------------G~V~lw~l~~ 560 (564)
++.+++.|+.+ ..|.+||+.+
T Consensus 253 ~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~ 287 (318)
T 2woz_A 253 AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDK 287 (318)
T ss_dssp TTEEEEECCBCCBC----CCBCCBCCCEEEEETTT
T ss_pred CCEEEEECCeeccCCCCceeccceeeeEEEEeCCC
Confidence 56777777654 3477788764
No 332
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.47 E-value=0.095 Score=51.22 Aligned_cols=236 Identities=11% Similarity=0.098 Sum_probs=140.0
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCC-ceeeecc
Q 043172 267 SVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKA-KADKIGP 345 (564)
Q Consensus 267 ~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~-~~~~~~~ 345 (564)
+.-.||..+.+|.-. ..++.||+++.+ .++.+.... .+|.-=.|-.. +.|+..+ +..|+-|++... ...++..
T Consensus 71 sAIMnP~~~ViALra-g~~LQiFnletK--~klks~~~~-e~VvfWkWis~-~~L~lVT-~taVyHWs~~~~s~P~kvFd 144 (365)
T 2xzh_A 71 SAIMNPASKVIALKA-GKTLQIFNIEMK--SKMKAHTMT-DDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFD 144 (365)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTT--EEEEEEECS-SCEEEEEECSS-SEEEEEE-SSEEEEEESSTTCCCEEEEE
T ss_pred eeeeCCCccEEEEec-CCeEEEechHHh--hhhcceecC-CccEEEEecCC-CeEEEEc-CCcEEEEcccCCCCCceeee
Confidence 455689988888775 788999999854 456655543 46666666543 4555544 567999999753 2323221
Q ss_pred cccc-CCcceEEEEEcCCCCEEEEEeC-------CCeEEEEECCCCcEEEEeeecCcEEEE-EEecCC-----CEEEEEe
Q 043172 346 LVGR-EEKSLEFFEVSPDSSVIAFVGN-------EGYILLVSSKTKELIGTLKMNGTVRSL-AFADDG-----KQLLSSG 411 (564)
Q Consensus 346 ~~~~-~~~~v~~~~~spdg~~la~~~~-------dg~I~lwd~~t~~~~~~~~~~~~V~~l-~~spdg-----~~l~s~s 411 (564)
.... ....|-....+++.++++..|- .|.+.+|..+.+.. +.+ .+.+.++ .+-.+| ..|+.+.
T Consensus 145 R~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-Q~i--eGhaa~F~~~~~~g~~~~~~lf~fa~ 221 (365)
T 2xzh_A 145 RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPI--EGHAASFAQFKMEGNAEESTLFCFAV 221 (365)
T ss_dssp CCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEE-EEE--CCSEEEEEEECCTTCSSCEEEEEEEE
T ss_pred cchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccccc-cee--eeeeeeeEEEecCCCCCCceEEEEEE
Confidence 1111 1235777888899998877653 27888998765532 222 2222222 121122 1233332
Q ss_pred C---CCeEEEEECCCC---c------eeEEEeec--CCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEE
Q 043172 412 G---DGQVYHWDLRTR---T------CIHRAVDE--GCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKT 477 (564)
Q Consensus 412 ~---dg~V~lwD~~~~---~------~~~~~~~~--~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~ 477 (564)
. .+.+++.++... . .+..+... ...-..++.+|+.-..+..-+.-|.|++||+.++ .++..
T Consensus 222 r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTg-----t~i~~ 296 (365)
T 2xzh_A 222 RGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG-----TCIYM 296 (365)
T ss_dssp EETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC-----CEEEE
T ss_pred ecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccC-----cEEEE
Confidence 2 258899988432 1 11112211 1223457888888888999999999999999998 77766
Q ss_pred ccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCce
Q 043172 478 IENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNV 518 (564)
Q Consensus 478 ~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~ 518 (564)
-+-...+|..-+.+..+.-++.... .|.|.-..+...+.
T Consensus 297 nrIS~d~iF~ta~~~~~~Gi~~Vnr--~GqVl~v~v~~~~i 335 (365)
T 2xzh_A 297 NRISGETIFVTAPHEATAGIIGVNR--KGQVLSVCVEEENI 335 (365)
T ss_dssp EECCSSCEEEEEEEGGGTEEEEEET--TCEEEEEEECTTTH
T ss_pred eccCCCceEEecccCCCCcEEEEcC--CCEEEEEEECcccE
Confidence 5555555554444443333333344 67777776665443
No 333
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.45 E-value=0.0066 Score=60.81 Aligned_cols=234 Identities=11% Similarity=0.110 Sum_probs=118.2
Q ss_pred CCCEEEEEeC-CCeEEEEECCC--CceeeeccccccCCcceEEEEEcCCCCEEEEEeC-C---------CeEEEEECCCC
Q 043172 317 DGSQAIIAGR-RKFFYSLDLVK--AKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGN-E---------GYILLVSSKTK 383 (564)
Q Consensus 317 dg~~l~s~~~-dg~i~iwdl~~--~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~-d---------g~I~lwd~~t~ 383 (564)
++..++.||. ...+.+||+.+ .+...+..++.........+.+ ++.++++||. + ..+.+||+.+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 5555555553 35789999874 5555554444111111222222 5677777775 2 46899999998
Q ss_pred cEEEEeeec-C-cEEEEEEecCCCEEEEEeCC---------------------------------------CeEEEEECC
Q 043172 384 ELIGTLKMN-G-TVRSLAFADDGKQLLSSGGD---------------------------------------GQVYHWDLR 422 (564)
Q Consensus 384 ~~~~~~~~~-~-~V~~l~~spdg~~l~s~s~d---------------------------------------g~V~lwD~~ 422 (564)
++...-... . .....+...++++++.|+.+ ..+.+||+.
T Consensus 97 ~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~ 176 (357)
T 2uvk_A 97 SWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPS 176 (357)
T ss_dssp EEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETT
T ss_pred cEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCC
Confidence 876543322 1 11111222467777888754 479999998
Q ss_pred CCceeEEEeecCCcce-EEEEECCCCCEEEEEeC------CCcEEEEeC--CcccCCcceeeEEccccccceeEEEEcCC
Q 043172 423 TRTCIHRAVDEGCING-TALCTSPDGTFFAAGSD------SGIVNVYNR--QEFLGGKRKPIKTIENLTTKVDFMKFNND 493 (564)
Q Consensus 423 ~~~~~~~~~~~~~~~i-~~l~~sp~g~~lasgs~------dg~V~iwd~--~~~~~~~~~~~~~~~~~~~~I~~l~fspd 493 (564)
+.+-...-........ .+++.. ++++++.|+. ...+.+|++ .+. .+..+..+........+.+...+
T Consensus 177 ~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~---~W~~~~~~~~~~~~~~~~~~~~~ 252 (357)
T 2uvk_A 177 TQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNL---KWNKLAPVSSPDGVAGGFAGISN 252 (357)
T ss_dssp TTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---C---EEEECCCSSTTTCCBSCEEEEET
T ss_pred CCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCC---cEEecCCCCCCcccccceEEEEC
Confidence 8764433221111111 233332 5667777653 345777876 321 22333322211111122233346
Q ss_pred CcEEEEEecCCC--------------------CeEEEEEcCCCc--eeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCC
Q 043172 494 AQILAICSTMKK--------------------NSLKLIHIPSYN--VFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAG 551 (564)
Q Consensus 494 g~~La~~s~~~d--------------------~~I~lwdl~s~~--~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG 551 (564)
+.++++|+...+ ..+.+||+.+.+ .+..++... ..-.+ +..++++++.|+.++
T Consensus 253 ~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r---~~~~~--~~~~~~i~v~GG~~~ 327 (357)
T 2uvk_A 253 DSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGR---AYGVS--LPWNNSLLIIGGETA 327 (357)
T ss_dssp TEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCC---BSSEE--EEETTEEEEEEEECG
T ss_pred CEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCc---cccee--EEeCCEEEEEeeeCC
Confidence 777777764211 257788887643 333333222 22222 334678888888543
Q ss_pred ------eEEEEEcCCC
Q 043172 552 ------KVFLYKLNHY 561 (564)
Q Consensus 552 ------~V~lw~l~~~ 561 (564)
.|.++++...
T Consensus 328 ~~~~~~~v~~l~~~~~ 343 (357)
T 2uvk_A 328 GGKAVTDSVLITVKDN 343 (357)
T ss_dssp GGCEEEEEEEEEC-CC
T ss_pred CCCEeeeEEEEEEcCc
Confidence 3555566543
No 334
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.43 E-value=0.0062 Score=70.44 Aligned_cols=220 Identities=15% Similarity=0.238 Sum_probs=142.3
Q ss_pred CCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeeecCcEEEEEEecCCCE
Q 043172 327 RKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLKMNGTVRSLAFADDGKQ 406 (564)
Q Consensus 327 dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg~~ 406 (564)
...|.|.|+..+......++ ...+.-.+|..+.||.-. ...+.|+|+.+.+.+..+..+..|.-=.|-.. +.
T Consensus 47 ~~~vvIidl~~~~~~~rrpi------~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~VvfWkWis~-~~ 118 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRPI------SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL-NT 118 (1630)
T ss_pred CceEEEEECCCCCCcccccc------cchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCCCceEEEecCC-Ce
Confidence 34788888887664221111 233456788888888775 68999999999999888887777766666543 34
Q ss_pred EEEEeCCCeEEEEECCCC-ceeEEEeec---CCcceEEEEECCCCCEEEEEe-------CCCcEEEEeCCcccCCcceee
Q 043172 407 LLSSGGDGQVYHWDLRTR-TCIHRAVDE---GCINGTALCTSPDGTFFAAGS-------DSGIVNVYNRQEFLGGKRKPI 475 (564)
Q Consensus 407 l~s~s~dg~V~lwD~~~~-~~~~~~~~~---~~~~i~~l~~sp~g~~lasgs-------~dg~V~iwd~~~~~~~~~~~~ 475 (564)
|+..+ +..|+.|++... .++..|..+ .+..|..-..+++.+|++..+ -.|.+.+|.... +..
T Consensus 119 l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er------~~s 191 (1630)
T 1xi4_A 119 VALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR------KVS 191 (1630)
T ss_pred eEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccc------ccc
Confidence 55444 457999999643 333333222 134677778889999887543 357899999886 445
Q ss_pred EEccccccceeEEEEc---CCCcEEEEEecCC-CCeEEEEEcCCC----ceec------cCCCCCCCCCCcEEEEEeCCC
Q 043172 476 KTIENLTTKVDFMKFN---NDAQILAICSTMK-KNSLKLIHIPSY----NVFS------NWPPANRNLQYPRCLDFSPGG 541 (564)
Q Consensus 476 ~~~~~~~~~I~~l~fs---pdg~~La~~s~~~-d~~I~lwdl~s~----~~~~------~~~~~~~~~~~V~~l~fspdg 541 (564)
..+.+|.+....+... +..++++.+.... .+.++|.++... ..+. .+|. ........++..|+.-
T Consensus 192 Q~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~-~~~~Dfpv~~~vs~k~ 270 (1630)
T 1xi4_A 192 QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPP-EAQNDFPVAMQISEKH 270 (1630)
T ss_pred hhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCc-ccccCcceEEEecccc
Confidence 5566666555444442 1234555444311 268999988542 1111 1111 1223456788889988
Q ss_pred CEEEEEcCCCeEEEEEcCCCC
Q 043172 542 GFMAVGNAAGKVFLYKLNHYH 562 (564)
Q Consensus 542 ~~Lasgs~dG~V~lw~l~~~~ 562 (564)
..+..-+.-|.|++||+.+..
T Consensus 271 g~iy~itk~G~~~~~d~~t~~ 291 (1630)
T 1xi4_A 271 DVVFLITKYGYIHLYDLETGT 291 (1630)
T ss_pred CEEEEEecCceEEEEecccch
Confidence 889899999999999998764
No 335
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.37 E-value=0.16 Score=51.57 Aligned_cols=238 Identities=11% Similarity=0.080 Sum_probs=141.7
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCC-ceeeec
Q 043172 266 NSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKA-KADKIG 344 (564)
Q Consensus 266 ~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~-~~~~~~ 344 (564)
-+.-.||..+.+|.-. ..++.||+++.+ .++.+..... +|.-=.|-.. +.|+..+ +..|+-|++... ...++.
T Consensus 69 dsAIMnP~~~iiALra-g~~lQiFnle~K--~klks~~~~e-~VvfWkWis~-~~l~lVT-~taVyHWsi~~~s~P~kvF 142 (494)
T 1bpo_A 69 DSAIMNPASKVIALKA-GKTLQIFNIEMK--SKMKAHTMTD-DVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMF 142 (494)
T ss_dssp SEEEECSSSSCEEEEE-TTEEEEEETTTT--EEEEEEECSS-CCCEEEEEET-TEEEEEC-SSEEEEEESSSSCCCEEEE
T ss_pred ceeeeCCCCcEEEEec-CCeEEEEchHHh--hhhcceecCC-CceEEEecCC-CeEEEEc-CCeeEEecccCCCCchhhe
Confidence 3566788888887765 789999999854 4566555443 5666666644 3555444 567999999753 222322
Q ss_pred cccc-cCCcceEEEEEcCCCCEEEEEeC-------CCeEEEEECCCCcEEEEeeecCcEEEEEEecCC-----CEEEEEe
Q 043172 345 PLVG-REEKSLEFFEVSPDSSVIAFVGN-------EGYILLVSSKTKELIGTLKMNGTVRSLAFADDG-----KQLLSSG 411 (564)
Q Consensus 345 ~~~~-~~~~~v~~~~~spdg~~la~~~~-------dg~I~lwd~~t~~~~~~~~~~~~V~~l~~spdg-----~~l~s~s 411 (564)
.... -....|-....+++.++++..|- .|.+.+|+.+.+.....-.|.+.... +-.+| ..++.+.
T Consensus 143 dR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~--~~~~g~~~~~~lf~fa~ 220 (494)
T 1bpo_A 143 DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQ--FKMEGNAEESTLFCFAV 220 (494)
T ss_dssp ECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEEE--EECTTCSSEEEEEEEEE
T ss_pred ecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchheeeeeeeEE--EecCCCCCCceEEEEEE
Confidence 1111 11235777888999998887653 37888998876543211112222211 11122 2333333
Q ss_pred C---CCeEEEEECCCC---c------eeEEEeec--CCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEE
Q 043172 412 G---DGQVYHWDLRTR---T------CIHRAVDE--GCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKT 477 (564)
Q Consensus 412 ~---dg~V~lwD~~~~---~------~~~~~~~~--~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~ 477 (564)
. .+.+++.++... . .+..+... ...-..++.+|+.-..+..-+.-|.|++||+.++ .++..
T Consensus 221 r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTg-----t~i~~ 295 (494)
T 1bpo_A 221 RGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG-----TCIYM 295 (494)
T ss_dssp CSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC-----CEEEE
T ss_pred ecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccc-----eeeee
Confidence 3 278999988543 1 11111111 1223467888888888999999999999999998 77766
Q ss_pred ccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCce
Q 043172 478 IENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNV 518 (564)
Q Consensus 478 ~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~ 518 (564)
-+-...+|..-+.+....-++.... .|.|.-..+...+.
T Consensus 296 nrIs~~~iF~t~~~~~~~Gi~~Vnr--~GqVl~v~v~e~~i 334 (494)
T 1bpo_A 296 NRISGETIFVTAPHEATAGIIGVNR--KGQVLSVCVEEENI 334 (494)
T ss_dssp EECCSSCEEEEEEETTTTEEEEEET--TCEEEEEEECTTTH
T ss_pred ecccCCceEEecccCCCCcEEEEcc--CceEEEEEEccccc
Confidence 5555555655555444444444444 67777776665443
No 336
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=97.32 E-value=0.065 Score=55.69 Aligned_cols=108 Identities=11% Similarity=0.150 Sum_probs=62.1
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEe------CCcCeEEEEEeeC---CCEEEEEeC--------
Q 043172 264 PINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFL------EDCPVRKASFLPD---GSQAIIAGR-------- 326 (564)
Q Consensus 264 ~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~------~~~~I~~l~fspd---g~~l~s~~~-------- 326 (564)
..++|+|.|+|+++++-...+.|++++........+..+.. ....+..|+|+|+ +.+|+++..
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~ 107 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD 107 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence 46799999999977775444567777653222222222211 2345679999996 566665542
Q ss_pred -----CCeEEEEECCCC--ce---eeec-cccccCCcceEEEEEcCCCCEEEEEeC
Q 043172 327 -----RKFFYSLDLVKA--KA---DKIG-PLVGREEKSLEFFEVSPDSSVIAFVGN 371 (564)
Q Consensus 327 -----dg~i~iwdl~~~--~~---~~~~-~~~~~~~~~v~~~~~spdg~~la~~~~ 371 (564)
...|..|++..+ .. ..+. .+..........++|.|+|.+.++.+.
T Consensus 108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 235666665432 11 1111 122211234788999999987777653
No 337
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=97.18 E-value=0.015 Score=64.23 Aligned_cols=192 Identities=10% Similarity=0.126 Sum_probs=111.4
Q ss_pred CCCCEEEEEeCC----CcEEEEEecCCCCceeE-E-----EEeCCcCeEEEEEee-CCCEEEEEeCC------CeEEEEE
Q 043172 272 RNAQLLLVAGLD----RRLRFFQIDGKRNTKIQ-S-----IFLEDCPVRKASFLP-DGSQAIIAGRR------KFFYSLD 334 (564)
Q Consensus 272 pdg~~l~s~s~d----g~I~lwd~~~~~~~~~~-~-----~~~~~~~I~~l~fsp-dg~~l~s~~~d------g~i~iwd 334 (564)
.++.+++.||.+ ..+.+||........+. . +..... -.+++..+ ++..++.||.+ ..+.+||
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~-~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARM-CHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCB-SCEEEEETTTTEEEEECCBSSTTCBCCCCEEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCcccc-ceEEEEEccCCEEEEEcCCCCCCCccccEEEEe
Confidence 567788888753 46778887655433332 1 111111 12333333 67677777643 3588999
Q ss_pred CCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCC--eEEEEECCCCcEEEEee------ecCcEEEEEEecC-CC
Q 043172 335 LVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEG--YILLVSSKTKELIGTLK------MNGTVRSLAFADD-GK 405 (564)
Q Consensus 335 l~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg--~I~lwd~~t~~~~~~~~------~~~~V~~l~~spd-g~ 405 (564)
+.+.....+..+..... -.+++...++.++++||.++ .+.+||+.+..+...-. ......++.+..+ ++
T Consensus 475 ~~t~~W~~~~~~p~~R~--~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~ 552 (695)
T 2zwa_A 475 MKTREWSMIKSLSHTRF--RHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQ 552 (695)
T ss_dssp TTTTEEEECCCCSBCCB--SCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTE
T ss_pred CCCCcEEECCCCCCCcc--cceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCE
Confidence 99988776654443222 22333334788888888654 79999999988765432 1112233555555 66
Q ss_pred EEEEEeC--C-----CeEEEEECCCCce-----eEEEee---cCCcceEEEEECCCCCEEEEEeC--------CCcEEEE
Q 043172 406 QLLSSGG--D-----GQVYHWDLRTRTC-----IHRAVD---EGCINGTALCTSPDGTFFAAGSD--------SGIVNVY 462 (564)
Q Consensus 406 ~l~s~s~--d-----g~V~lwD~~~~~~-----~~~~~~---~~~~~i~~l~~sp~g~~lasgs~--------dg~V~iw 462 (564)
+++.||. + ..+.+||+.+... -..+.. ...... +++...++.+++.|+. ...|.+|
T Consensus 553 iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~y 631 (695)
T 2zwa_A 553 GIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGS-QIKYITPRKLLIVGGTSPSGLFDRTNSIISL 631 (695)
T ss_dssp EEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSC-EEEEEETTEEEEECCBCSSCCCCTTTSEEEE
T ss_pred EEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccc-eEEEeCCCEEEEECCccCCCCCCCCCeEEEE
Confidence 6777765 2 4699999988771 111111 111122 2333333677777774 3468999
Q ss_pred eCCcc
Q 043172 463 NRQEF 467 (564)
Q Consensus 463 d~~~~ 467 (564)
|..+.
T Consensus 632 d~~t~ 636 (695)
T 2zwa_A 632 DPLSE 636 (695)
T ss_dssp ETTTT
T ss_pred ECCCC
Confidence 98864
No 338
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=97.15 E-value=0.0074 Score=59.99 Aligned_cols=143 Identities=7% Similarity=-0.052 Sum_probs=82.5
Q ss_pred CEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEE--cCCCCEEEEE--eCCCeEEEEECCCCcEEEEeeec--
Q 043172 319 SQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEV--SPDSSVIAFV--GNEGYILLVSSKTKELIGTLKMN-- 392 (564)
Q Consensus 319 ~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~--spdg~~la~~--~~dg~I~lwd~~t~~~~~~~~~~-- 392 (564)
..+++++.||.|+-+|..+|+..-..... ... ++....- .+.+..++++ +.+|.|+.++..+|.....+...
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~-~~~-p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~l 88 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPE-NFQ-PLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQL 88 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGG-GSC-CSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCC-ccC-CcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccc
Confidence 47888899999999999999864332222 101 1111100 0112234433 57999999999988665555422
Q ss_pred ---CcEEE---EEE-----ecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcc------eEEEEEC-----CCCCEE
Q 043172 393 ---GTVRS---LAF-----ADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCIN------GTALCTS-----PDGTFF 450 (564)
Q Consensus 393 ---~~V~~---l~~-----spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~------i~~l~~s-----p~g~~l 450 (564)
.++.. ... ...+..+++|+.+|.++..|+.+|+.+..+....... ..|.... ..+..|
T Consensus 89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v 168 (339)
T 2be1_A 89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMI 168 (339)
T ss_dssp HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEE
T ss_pred eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeE
Confidence 22221 000 0135578899999999999999999998876543211 0111110 123567
Q ss_pred EEEeCCCcEEEEe
Q 043172 451 AAGSDSGIVNVYN 463 (564)
Q Consensus 451 asgs~dg~V~iwd 463 (564)
+.|..+..|.+.+
T Consensus 169 ~ig~~~y~v~~~~ 181 (339)
T 2be1_A 169 VIGKTIFELGIHS 181 (339)
T ss_dssp EEEEEEEECEECC
T ss_pred EEecceEEEEEEC
Confidence 7777766666665
No 339
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.14 E-value=0.041 Score=55.80 Aligned_cols=143 Identities=10% Similarity=0.070 Sum_probs=90.0
Q ss_pred eCCCEEEEEeCCCeEEEEECCCCceeeecccccc-CCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc----------
Q 043172 316 PDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGR-EEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKE---------- 384 (564)
Q Consensus 316 pdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~-~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~---------- 384 (564)
.+|..++++- ++.|+.-++.....-+...+..+ ....+..+..+|+|.+||..+. ..|.|..+..+.
T Consensus 30 ~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~ 107 (452)
T 3pbp_A 30 QNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQD 107 (452)
T ss_dssp TTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHH
T ss_pred cCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCccccccc
Confidence 3555555544 35666666663332222223210 1114677999999999999865 578888876221
Q ss_pred --EEEEee-------ecCcEEEEEEec---CCCEEEEEeCCCeEEEEECCCCc--eeEEEee--------cCCcceEEEE
Q 043172 385 --LIGTLK-------MNGTVRSLAFAD---DGKQLLSSGGDGQVYHWDLRTRT--CIHRAVD--------EGCINGTALC 442 (564)
Q Consensus 385 --~~~~~~-------~~~~V~~l~~sp---dg~~l~s~s~dg~V~lwD~~~~~--~~~~~~~--------~~~~~i~~l~ 442 (564)
....+. ...+|..+.||| .+..|++-..|+.|++||+.... +. .+.. .....+.++|
T Consensus 108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~ 186 (452)
T 3pbp_A 108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLE 186 (452)
T ss_dssp TTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEE
T ss_pred ccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEE
Confidence 122333 146799999999 45789999999999999998522 12 1211 1114678999
Q ss_pred ECCCCCEEEEEe--CCCcEEE
Q 043172 443 TSPDGTFFAAGS--DSGIVNV 461 (564)
Q Consensus 443 ~sp~g~~lasgs--~dg~V~i 461 (564)
|++++-.|.+.+ ..|-|+-
T Consensus 187 Fg~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 187 FSKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp ECTTSSCEEEEECTTSCEEEE
T ss_pred EcCCCcEEEEEecCCCCCEEE
Confidence 999876555544 7777653
No 340
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.06 E-value=0.56 Score=51.91 Aligned_cols=271 Identities=13% Similarity=0.085 Sum_probs=151.0
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCcee
Q 043172 262 TGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKAD 341 (564)
Q Consensus 262 ~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~ 341 (564)
...|.++....+| .|..|+.+| +..||........ ........|.++.. .+| .|.+++.+ -+..|+..+++..
T Consensus 62 ~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~--~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~ 134 (758)
T 3ott_A 62 NTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQ--PETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLT 134 (758)
T ss_dssp SSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECC--CSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEE
T ss_pred CceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEEC--cccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEE
Confidence 4579999888776 455555555 7788765332111 00011234666654 455 56666655 5888998877654
Q ss_pred eeccc-cccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeee------cCcEEEEEEecCCCEEEEEeCCC
Q 043172 342 KIGPL-VGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLKM------NGTVRSLAFADDGKQLLSSGGDG 414 (564)
Q Consensus 342 ~~~~~-~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~~------~~~V~~l~~spdg~~l~s~s~dg 414 (564)
..... .+.....|.++....+|.+.+ ++.. -|..++..+++....... ...|.++...+++..|.+|+. +
T Consensus 135 ~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~ 211 (758)
T 3ott_A 135 SFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-G 211 (758)
T ss_dssp EECHHHHCCSCSCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-E
T ss_pred EeccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-C
Confidence 43111 111223588888888887665 4444 477888877654322111 124888888877776666664 5
Q ss_pred eEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEcc--------cccccee
Q 043172 415 QVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIE--------NLTTKVD 486 (564)
Q Consensus 415 ~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~--------~~~~~I~ 486 (564)
-|..+|..+++... +.......|.+++...+|.+. +|+.. -+.+|+.... .+..+. -....|.
T Consensus 212 Gl~~~~~~~~~~~~-~~~l~~~~i~~i~~d~~g~lW-igT~~-Gl~~~~~~~~------~~~~~~~~~~~~~~l~~~~i~ 282 (758)
T 3ott_A 212 YLFQYFPSTGQIKQ-TEAFHNNSIKSLALDGNGDLL-AGTDN-GLYVYHNDTT------PLQHIIHDSRNIQSLTNNIIW 282 (758)
T ss_dssp EEEEEETTTTEEEE-EEEEEEEEEEEEEECTTCCEE-EEETT-EEEEECCTTS------CCEEECCCTTCTTSCSCSCEE
T ss_pred CCeEEcCCCCeEEe-ccCCCCCeEEEEEEcCCCCEE-EEeCC-ceeEEecCCC------cEEEEEcCCCCcCcCCcCeEE
Confidence 68899988765432 221122357788888777644 45554 4788887653 111111 1134588
Q ss_pred EEEEcCCCcEEEEEecCCCCeEEEEEcCC-CceeccCC-CCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEE
Q 043172 487 FMKFNNDAQILAICSTMKKNSLKLIHIPS-YNVFSNWP-PANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYK 557 (564)
Q Consensus 487 ~l~fspdg~~La~~s~~~d~~I~lwdl~s-~~~~~~~~-~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~ 557 (564)
++....+|.+- +|+. .| +.++.... ...+.... ........|.++.-..+|.+.+ |+..| +..++
T Consensus 283 ~i~~D~~g~lW-iGT~--~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWi-Gt~~G-l~~~~ 349 (758)
T 3ott_A 283 NIFADQEHNIW-LGTD--YG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWF-GGANG-LIRFT 349 (758)
T ss_dssp EEEECTTCCEE-EEES--SS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEE-EETTE-EEEES
T ss_pred EEEEcCCCCEE-EEeC--Cc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEE-eeCCc-ceeec
Confidence 88887777644 4554 45 44443221 11110000 0011124588888888877554 44555 44454
No 341
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=97.05 E-value=0.041 Score=60.65 Aligned_cols=233 Identities=12% Similarity=0.067 Sum_probs=121.7
Q ss_pred eCCCEEEEEeCC----CeEEEEECCCCceeeec-ccc---ccCCcceEEEEEcC-CCCEEEEEeCC------CeEEEEEC
Q 043172 316 PDGSQAIIAGRR----KFFYSLDLVKAKADKIG-PLV---GREEKSLEFFEVSP-DSSVIAFVGNE------GYILLVSS 380 (564)
Q Consensus 316 pdg~~l~s~~~d----g~i~iwdl~~~~~~~~~-~~~---~~~~~~v~~~~~sp-dg~~la~~~~d------g~I~lwd~ 380 (564)
.++..++.||.+ ..+.+||+.++....+. .+. ......-.+++..+ ++.++++||.+ ..+.+||+
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 455666666642 46889999988776654 311 11111122333333 77788888754 35889999
Q ss_pred CCCcEEEEeeecC--cEEEEEEecCCCEEEEEeCCC--eEEEEECCCCceeEEEe----ecCCcceEEEEECCC-CCEEE
Q 043172 381 KTKELIGTLKMNG--TVRSLAFADDGKQLLSSGGDG--QVYHWDLRTRTCIHRAV----DEGCINGTALCTSPD-GTFFA 451 (564)
Q Consensus 381 ~t~~~~~~~~~~~--~V~~l~~spdg~~l~s~s~dg--~V~lwD~~~~~~~~~~~----~~~~~~i~~l~~sp~-g~~la 451 (564)
.+.++...-.... .-.+++...++.+++.||.++ .+.+||+.+..-...-. ........++++..+ +..++
T Consensus 476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv 555 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII 555 (695)
T ss_dssp TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence 9987765433211 112233324788888887654 69999998866433211 011112233555555 66777
Q ss_pred EEeC--C-----CcEEEEeCCcccC---CcceeeEEccccccceeEEEEcCCCcEEEEEecCC------CCeEEEEEcCC
Q 043172 452 AGSD--S-----GIVNVYNRQEFLG---GKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMK------KNSLKLIHIPS 515 (564)
Q Consensus 452 sgs~--d-----g~V~iwd~~~~~~---~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~------d~~I~lwdl~s 515 (564)
.|+. + ..+.+||+.+... ..+..+.........-.+++...++.++++|+... .+.|.+||+.+
T Consensus 556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t 635 (695)
T 2zwa_A 556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLS 635 (695)
T ss_dssp ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTT
T ss_pred ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCC
Confidence 7765 2 3588999887510 00223322111111111233333477777777421 35699999987
Q ss_pred CceeccCCCCCC------CCCCcEEEEEeCCCCEEEEEcC
Q 043172 516 YNVFSNWPPANR------NLQYPRCLDFSPGGGFMAVGNA 549 (564)
Q Consensus 516 ~~~~~~~~~~~~------~~~~V~~l~fspdg~~Lasgs~ 549 (564)
.+-. ..+.... +...-.++...++|++++.|+.
T Consensus 636 ~~W~-~~~~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg 674 (695)
T 2zwa_A 636 ETLT-SIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGG 674 (695)
T ss_dssp TEEE-ECCCCHHHHHHSCCCCSSCEEECC---CEEEECCE
T ss_pred CeEE-EeeccccccCCCCccceeeeEEEeCCCEEEEEeCC
Confidence 6543 1111100 1011123444456678777763
No 342
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=96.99 E-value=0.41 Score=49.68 Aligned_cols=248 Identities=10% Similarity=0.013 Sum_probs=124.1
Q ss_pred CeEEEEEeeCCC-EEEEEeCCCeEEEEECCCCce----eeeccccc-----cCCcceEEEEEcCC----CCEEEEEeC--
Q 043172 308 PVRKASFLPDGS-QAIIAGRRKFFYSLDLVKAKA----DKIGPLVG-----REEKSLEFFEVSPD----SSVIAFVGN-- 371 (564)
Q Consensus 308 ~I~~l~fspdg~-~l~s~~~dg~i~iwdl~~~~~----~~~~~~~~-----~~~~~v~~~~~spd----g~~la~~~~-- 371 (564)
....|+|.|+|. .|+++.+.|.|++++...... ..+..... .....+..|+|+|+ +.+.++-+.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 457899999996 677778899999997543211 11111111 11235788999996 333333221
Q ss_pred C----------CeEEEEECCC----------CcEEEEee---ecCcEEEEEEecCCCEEEEEeCCC--------------
Q 043172 372 E----------GYILLVSSKT----------KELIGTLK---MNGTVRSLAFADDGKQLLSSGGDG-------------- 414 (564)
Q Consensus 372 d----------g~I~lwd~~t----------~~~~~~~~---~~~~V~~l~~spdg~~l~s~s~dg-------------- 414 (564)
+ ..|.-|.+.. .+.+..+. .......|+|.|||.+.++.+..+
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~~ 174 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLSD 174 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCCS
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCcCC
Confidence 1 1444455532 12333332 123467899999998777766432
Q ss_pred ---eEEEEECCCC------c-------------eeEEEeecCCcceEEEEECCC-----CC-EEEEEeCCC----cEEEE
Q 043172 415 ---QVYHWDLRTR------T-------------CIHRAVDEGCINGTALCTSPD-----GT-FFAAGSDSG----IVNVY 462 (564)
Q Consensus 415 ---~V~lwD~~~~------~-------------~~~~~~~~~~~~i~~l~~sp~-----g~-~lasgs~dg----~V~iw 462 (564)
.|.-.+.... . ....+...+. ....++|+|. |. +++.+...| .-.|.
T Consensus 175 ~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~R-Np~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~ei~ 253 (463)
T 2wg3_C 175 FTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLH-DPGRCAVDRHPTDININLTILCSDSNGKNRSSARIL 253 (463)
T ss_dssp CTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCS-SCCBEEEESSCSSTTCSEEEEEECC------CEEEE
T ss_pred CCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCC-CcceEEECCCCCCcccceEEEecccCCCCCCCCeEe
Confidence 3333444321 0 0011221121 3467889986 34 444433212 12333
Q ss_pred eCCccc-CCcceeeEEccccc-cceeEEEEcCC-------CcEEEEEecCCCCeEEEEEcCCCce-e--ccC-----CCC
Q 043172 463 NRQEFL-GGKRKPIKTIENLT-TKVDFMKFNND-------AQILAICSTMKKNSLKLIHIPSYNV-F--SNW-----PPA 525 (564)
Q Consensus 463 d~~~~~-~~~~~~~~~~~~~~-~~I~~l~fspd-------g~~La~~s~~~d~~I~lwdl~s~~~-~--~~~-----~~~ 525 (564)
.+..+. -....|+..+..+. ..++.+.|... |.+ +++.. .+.|....+..... . ..+ ...
T Consensus 254 ~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~-f~~~~--~g~i~~~~~~~~~~~~~~~~~~~g~~~~~ 330 (463)
T 2wg3_C 254 QIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSY-VFGDR--NGNFLTLQQSPVTKQWQEKPLCLGTSGSC 330 (463)
T ss_dssp EEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCE-EEEET--TSCEEEEEC-----CCEEEEECEEETTSS
T ss_pred eeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceE-EEecC--CCcEEEEEeCCCCceeeEEEeecCCcccc
Confidence 333221 01225666665432 57788888543 334 44555 35555555543211 0 011 111
Q ss_pred -CCCCCCcEEEEEeCCCCEEEEEcCC-----CeEEEEEcC
Q 043172 526 -NRNLQYPRCLDFSPGGGFMAVGNAA-----GKVFLYKLN 559 (564)
Q Consensus 526 -~~~~~~V~~l~fspdg~~Lasgs~d-----G~V~lw~l~ 559 (564)
....+++..+.+.|+|.++++.... ..=+||+|.
T Consensus 331 ~~~~~~r~~~v~~~pdG~Lyv~~~~~~~~~~~~G~I~Ri~ 370 (463)
T 2wg3_C 331 RGYFSGHILGFGEDELGEVYILSSSKSMTQTHNGKLYKIV 370 (463)
T ss_dssp CSCCCSEEEEEEECTTCCEEEEEESSCGGGCSSEEEEEEE
T ss_pred cccccCcceEEEECCCCCEEEEeccCCcccCCCCcEEEec
Confidence 1123678999999999977766421 223567764
No 343
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.95 E-value=0.073 Score=54.00 Aligned_cols=150 Identities=12% Similarity=0.145 Sum_probs=99.8
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeeec-----CcEEEEEEecCCCEEEEEeCCCeEEEEECCCCc------
Q 043172 357 FEVSPDSSVIAFVGNEGYILLVSSKTKELIGTLKMN-----GTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRT------ 425 (564)
Q Consensus 357 ~~~spdg~~la~~~~dg~I~lwd~~t~~~~~~~~~~-----~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~------ 425 (564)
+..+.+|..++++ .++.|+.-++......+.+... ..|..+..+|+|++|+..+. .+|.|..+..+.
T Consensus 26 ~~~~~n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~ 103 (452)
T 3pbp_A 26 IFSSQNGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDV 103 (452)
T ss_dssp EEEETTTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCH
T ss_pred EEEEcCCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCccc
Confidence 3444556666555 3477888787754445555533 26788999999999998864 589998887321
Q ss_pred ------eeEEEeec-----CCcceEEEEECCC---CCEEEEEeCCCcEEEEeCCcccCCcceee--------EEcccccc
Q 043172 426 ------CIHRAVDE-----GCINGTALCTSPD---GTFFAAGSDSGIVNVYNRQEFLGGKRKPI--------KTIENLTT 483 (564)
Q Consensus 426 ------~~~~~~~~-----~~~~i~~l~~sp~---g~~lasgs~dg~V~iwd~~~~~~~~~~~~--------~~~~~~~~ 483 (564)
....+... ....|..+.|+|- +..|++-..|+.|++||+.... ..|. ..+.....
T Consensus 104 ~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~---~~P~~L~k~~~~fg~d~~~~ 180 (452)
T 3pbp_A 104 SIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQ---EKPIVLNKPNNSFGLDARVN 180 (452)
T ss_dssp HHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTT---SCCEEESCCCSEEESCSSCC
T ss_pred ccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCC---CCCcchhccccccCCCcccc
Confidence 11223322 2356899999996 4689999999999999998631 1222 11122336
Q ss_pred ceeEEEEcCCCcEEEEEecCCCCeEEEE
Q 043172 484 KVDFMKFNNDAQILAICSTMKKNSLKLI 511 (564)
Q Consensus 484 ~I~~l~fspdg~~La~~s~~~d~~I~lw 511 (564)
.|.+++|.+++-.|.+.+....|.|+-.
T Consensus 181 ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 181 DITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp CEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred eEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 7889999999888888663326777643
No 344
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.82 E-value=0.88 Score=50.31 Aligned_cols=276 Identities=14% Similarity=0.090 Sum_probs=149.6
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEE-------eCCcCeEEEEEeeCCCEEEEEeCCCeEEEEE
Q 043172 262 TGPINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIF-------LEDCPVRKASFLPDGSQAIIAGRRKFFYSLD 334 (564)
Q Consensus 262 ~~~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~-------~~~~~I~~l~fspdg~~l~s~~~dg~i~iwd 334 (564)
...|.++.-.++|.+.+. +..| +..++...........+. .....|.++.-.++|+..+ |+ ++-+..|+
T Consensus 323 ~~~v~~i~~D~~g~lWiG-t~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-gt-~~GL~~~~ 398 (758)
T 3ott_A 323 GNQFYSLFRDSKGFYWFG-GANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWI-AT-DGSINRYD 398 (758)
T ss_dssp CCBEEEEEECTTCCEEEE-ETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEE-EE-TTEEEEEE
T ss_pred CceEEEEEEcCCCCEEEe-eCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEE-Ee-CCcHhhcC
Confidence 356899988888876554 4444 555543321111222221 1123578887777776544 44 45699999
Q ss_pred CCCCceeeeccccc---cCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCC------CcEE--EEee-----ecCcEEEE
Q 043172 335 LVKAKADKIGPLVG---REEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKT------KELI--GTLK-----MNGTVRSL 398 (564)
Q Consensus 335 l~~~~~~~~~~~~~---~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t------~~~~--~~~~-----~~~~V~~l 398 (564)
..+++......... .....|.++...++|. |.+|+..+-|.+++..+ .... ..+. ....|.++
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i 477 (758)
T 3ott_A 399 YATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQ-LWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQI 477 (758)
T ss_dssp TTTTEEEEEEEECCC--CBSSSEEEEEECTTSE-EEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEE
T ss_pred cCCCcEEEeecCCCcCCCCCceEEEEEEcCCCC-EEEEECCCceEEEccccccccCCcceecccccccccccccceeeeE
Confidence 98887654321111 0123577887777765 44566656688888653 1121 1221 12358999
Q ss_pred EEecCCCEEEEEeCCCeEEEEECCCCceeEEEeec--CCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeE
Q 043172 399 AFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDE--GCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIK 476 (564)
Q Consensus 399 ~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~--~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~ 476 (564)
...++|++.+.++..+-|..+|..+++........ ....+.++....+|.+. .|+..| +..|+..... ...+
T Consensus 478 ~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lW-igt~~G-l~~~~~~~~~---~~~~- 551 (758)
T 3ott_A 478 IPDNEGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLW-VGFHGG-VMRINPKDES---QQSI- 551 (758)
T ss_dssp EECTTSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEE-EEETTE-EEEECC--CC---CCBC-
T ss_pred EEcCCCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEE-EEecCc-eEEEecCCCc---eEEe-
Confidence 98888886653444456888999876654322111 12356788888788654 455554 7888876531 0111
Q ss_pred Ecccc-ccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEE
Q 043172 477 TIENL-TTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFL 555 (564)
Q Consensus 477 ~~~~~-~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~l 555 (564)
...+. ...|.++... +|. |.+++. .| |..++..+.+.. .+.... ..++...+......|..|+.+|.+.
T Consensus 552 ~~~gl~~~~i~~i~~~-~g~-lWi~t~--~G-l~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~G~l~fG~~~Gl~~- 621 (758)
T 3ott_A 552 SFGSFSNNEILSMTCV-KNS-IWVSTT--NG-LWIIDRKTMDAR-QQNMTN---KRFTSLLFDPKEDCVYLGGADGFGI- 621 (758)
T ss_dssp CCCC---CCEEEEEEE-TTE-EEEEES--SC-EEEEETTTCCEE-EC--CC---CCCSEEEEETTTTEEEEECBSEEEE-
T ss_pred cccCCCccceEEEEEC-CCC-EEEECC--CC-eEEEcCCCceeE-EecCCC---CceeeeEEECCCCcEEEecCCceEE-
Confidence 11111 2457777664 664 455554 34 777787765543 222111 2233445544334566777788544
Q ss_pred EEc
Q 043172 556 YKL 558 (564)
Q Consensus 556 w~l 558 (564)
++.
T Consensus 622 f~p 624 (758)
T 3ott_A 622 SHS 624 (758)
T ss_dssp EEC
T ss_pred ECh
Confidence 444
No 345
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.54 E-value=0.072 Score=49.08 Aligned_cols=183 Identities=14% Similarity=0.102 Sum_probs=97.6
Q ss_pred CEEEEEeCCCeEEEEECCCCc---E---EEEeee--cCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCcee------EE
Q 043172 364 SVIAFVGNEGYILLVSSKTKE---L---IGTLKM--NGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCI------HR 429 (564)
Q Consensus 364 ~~la~~~~dg~I~lwd~~t~~---~---~~~~~~--~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~------~~ 429 (564)
.+|+....| .|+.=.+.++. . ...+.. =..+.+++|+|+|.+.++ .+|.++-.+..+.... ..
T Consensus 5 ~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~ 81 (236)
T 1tl2_A 5 SMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKK 81 (236)
T ss_dssp CCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEE
T ss_pred eEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccE
Confidence 345555555 55554444333 1 122222 136779999999985555 6788887776552221 11
Q ss_pred EeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceee-EEc-cccccceeEEEEcCCCcEEEEEecCCCCe
Q 043172 430 AVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPI-KTI-ENLTTKVDFMKFNNDAQILAICSTMKKNS 507 (564)
Q Consensus 430 ~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~-~~~-~~~~~~I~~l~fspdg~~La~~s~~~d~~ 507 (564)
+-..+-.....+.|.|+|.+.++ .||.|.-++..+.......-. ..+ ..--..+..|.|.|+|.+.++. . +.
T Consensus 82 IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-d---g~ 155 (236)
T 1tl2_A 82 IGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-G---QQ 155 (236)
T ss_dssp EECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-T---TE
T ss_pred ecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-C---Cc
Confidence 11111112368899999988777 558887776533211111000 011 1112467899999999988877 3 44
Q ss_pred EEEEEcCCCceeccCCCCC-----CCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCC
Q 043172 508 LKLIHIPSYNVFSNWPPAN-----RNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNH 560 (564)
Q Consensus 508 I~lwdl~s~~~~~~~~~~~-----~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~ 560 (564)
++-...++.... .|.... ..-..-+.+.|+|+|.++++. +| +||....
T Consensus 156 lyr~~~P~~~~~-~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g--~~Y~~~~ 208 (236)
T 1tl2_A 156 FYKALPPVSNQD-NWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GG--KFYEDYP 208 (236)
T ss_dssp EEEECCCSSTTC-CHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TT--EEEEESC
T ss_pred EEecCCCCCCCc-ccccccceeccCCcceEEEEEECCCCcEEEEe--CC--eEEecCC
Confidence 443333322110 010000 111234557799999887776 77 4555543
No 346
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.34 E-value=0.22 Score=57.94 Aligned_cols=258 Identities=10% Similarity=0.086 Sum_probs=140.3
Q ss_pred CCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCC
Q 043172 283 DRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPD 362 (564)
Q Consensus 283 dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spd 362 (564)
..+|.|.|+..+.......+ .--++..+|..+.|+.-. ..++.|+|+.+....+...+. . .|..-.|-..
T Consensus 47 ~~~vvIidl~~~~~~~rrpi-----~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~--e--~VvfWkWis~ 116 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRPI-----SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT--D--DVTFWKWISL 116 (1630)
T ss_pred CceEEEEECCCCCCcccccc-----cchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccC--C--CceEEEecCC
Confidence 34788888765433211111 122345678776666554 778999999987754443332 2 4666677644
Q ss_pred CCEEEEEeCCCeEEEEECCC-CcEEEEee-e----cCcEEEEEEecCCCEEEEEe-------CCCeEEEEECCCCceeEE
Q 043172 363 SSVIAFVGNEGYILLVSSKT-KELIGTLK-M----NGTVRSLAFADDGKQLLSSG-------GDGQVYHWDLRTRTCIHR 429 (564)
Q Consensus 363 g~~la~~~~dg~I~lwd~~t-~~~~~~~~-~----~~~V~~l~~spdg~~l~s~s-------~dg~V~lwD~~~~~~~~~ 429 (564)
. .|+..+ +..|+.|++.. ..++..+. | +..|.....+++.++++..| -.|.+.+|.+..+... .
T Consensus 117 ~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ-~ 193 (1630)
T 1xi4_A 117 N-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ-P 193 (1630)
T ss_pred C-eeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccch-h
Confidence 3 455553 46799999964 23433333 2 45677888888888877554 2478899988754321 2
Q ss_pred EeecCCcceEEEEEC--C-CCCEEEEEeC---CCcEEEEeCCccc-CCcc---eeeEEccc---cccceeEEEEcCCCcE
Q 043172 430 AVDEGCINGTALCTS--P-DGTFFAAGSD---SGIVNVYNRQEFL-GGKR---KPIKTIEN---LTTKVDFMKFNNDAQI 496 (564)
Q Consensus 430 ~~~~~~~~i~~l~~s--p-~g~~lasgs~---dg~V~iwd~~~~~-~~~~---~~~~~~~~---~~~~I~~l~fspdg~~ 496 (564)
+.+ |......+.+. + ....++.+.. .+.++|-++.... +..+ +.+..+.. ...-..++..|+.-.+
T Consensus 194 ieg-ha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~ 272 (1630)
T 1xi4_A 194 IEG-HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDV 272 (1630)
T ss_pred hhH-hHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCE
Confidence 221 11111112111 1 1123333322 3689999886531 1111 11111111 1223345777777777
Q ss_pred EEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q 043172 497 LAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLN 559 (564)
Q Consensus 497 La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~ 559 (564)
+.+-+. -|.|+++|+.+++++..-.... ..|...+..+...-++..+..|.|.--.++
T Consensus 273 iy~itk--~G~~~~~d~~t~~~i~~~ris~---~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~ 330 (1630)
T 1xi4_A 273 VFLITK--YGYIHLYDLETGTCIYMNRISG---ETIFVTAPHEATAGIIGVNRKGQVLSVCVE 330 (1630)
T ss_pred EEEEec--CceEEEEecccchhhhhccccC---CceEEeccCCCCCceEEEcCCceEEEEEEc
Confidence 777776 7999999999998765332221 233333333332334444577777655443
No 347
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.28 E-value=0.15 Score=47.03 Aligned_cols=142 Identities=13% Similarity=0.078 Sum_probs=81.4
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE------EEee--ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCC
Q 043172 353 SLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELI------GTLK--MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTR 424 (564)
Q Consensus 353 ~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~------~~~~--~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~ 424 (564)
.+..++|+|+|.+.++ .+|.++-.+..+.+.. ..+- .-..-.++.|.|+|.+.++ .||.|+-++..+.
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~ 117 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQS 117 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCS
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcC
Confidence 4679999999986666 6788887776552211 1111 0011478899999987766 5699998886442
Q ss_pred cee------EEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEE-cc-ccccceeEEEEcCCCcE
Q 043172 425 TCI------HRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKT-IE-NLTTKVDFMKFNNDAQI 496 (564)
Q Consensus 425 ~~~------~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~-~~-~~~~~I~~l~fspdg~~ 496 (564)
... ..+-..+-..+..|.+.|+|.+.++. +|.+.-...........-...+ +. ..-.....+.|.++|.+
T Consensus 118 ~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l 195 (236)
T 1tl2_A 118 DTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTL 195 (236)
T ss_dssp TTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCE
T ss_pred CCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcE
Confidence 221 12222233467899999999887777 7764322221110000000111 11 22223445778888887
Q ss_pred EEEE
Q 043172 497 LAIC 500 (564)
Q Consensus 497 La~~ 500 (564)
.++.
T Consensus 196 ~~v~ 199 (236)
T 1tl2_A 196 FGVQ 199 (236)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7765
No 348
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=96.25 E-value=1.4 Score=45.74 Aligned_cols=236 Identities=9% Similarity=0.079 Sum_probs=116.9
Q ss_pred CeeEEEEcCCCC-EEEEEeCCCcEEEEEecCCC-CceeEEEE---e------CCcCeEEEEEeeC---CCEEEEE-eC--
Q 043172 264 PINSVQFHRNAQ-LLLVAGLDRRLRFFQIDGKR-NTKIQSIF---L------EDCPVRKASFLPD---GSQAIIA-GR-- 326 (564)
Q Consensus 264 ~V~~l~fspdg~-~l~s~s~dg~I~lwd~~~~~-~~~~~~~~---~------~~~~I~~l~fspd---g~~l~s~-~~-- 326 (564)
.-+.|+|.|+|. .|+++...|.|++++.++.. ...+..+. . .......|+|+|+ ..+|++. +.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 457899999996 55566788999999754331 11222221 1 1346788999986 3344433 21
Q ss_pred C----------CeEEEEECCCC--------ceeeecccc-ccCCcceEEEEEcCCCCEEEEEeCC---------------
Q 043172 327 R----------KFFYSLDLVKA--------KADKIGPLV-GREEKSLEFFEVSPDSSVIAFVGNE--------------- 372 (564)
Q Consensus 327 d----------g~i~iwdl~~~--------~~~~~~~~~-~~~~~~v~~~~~spdg~~la~~~~d--------------- 372 (564)
+ ..|.-|.+..+ ....+..+. .........|+|.|||.+.++.+..
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~~ 174 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLSD 174 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCCS
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCcCC
Confidence 1 14555666431 111121221 1112246789999999887776653
Q ss_pred --CeEEEEECCCC---------------------cEEEEeeecCcEEEEEEecC-----CC-EEEEEeCCC----eEEEE
Q 043172 373 --GYILLVSSKTK---------------------ELIGTLKMNGTVRSLAFADD-----GK-QLLSSGGDG----QVYHW 419 (564)
Q Consensus 373 --g~I~lwd~~t~---------------------~~~~~~~~~~~V~~l~~spd-----g~-~l~s~s~dg----~V~lw 419 (564)
|.|.-++.... ..+..+-|. ....++|.|. |. .++.+...| .-.|.
T Consensus 175 ~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~R-Np~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~ei~ 253 (463)
T 2wg3_C 175 FTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLH-DPGRCAVDRHPTDININLTILCSDSNGKNRSSARIL 253 (463)
T ss_dssp CTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCS-SCCBEEEESSCSSTTCSEEEEEECC------CEEEE
T ss_pred CCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCC-CcceEEECCCCCCcccceEEEecccCCCCCCCCeEe
Confidence 34555554431 012222222 3557899986 34 344332112 12233
Q ss_pred ECCCC------ceeEEEeecCCcceEEEEECCC-------CCEEEEEeCCCcEEEEeCCcccC-CcceeeEE--c----c
Q 043172 420 DLRTR------TCIHRAVDEGCINGTALCTSPD-------GTFFAAGSDSGIVNVYNRQEFLG-GKRKPIKT--I----E 479 (564)
Q Consensus 420 D~~~~------~~~~~~~~~~~~~i~~l~~sp~-------g~~lasgs~dg~V~iwd~~~~~~-~~~~~~~~--~----~ 479 (564)
.+..+ .++..+..+....++.+.|-.. |.+|+ +...+.|....+..... .....+.+ . .
T Consensus 254 ~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~-~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~~~ 332 (463)
T 2wg3_C 254 QIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVF-GDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSCRG 332 (463)
T ss_dssp EEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEE-EETTSCEEEEEC-----CCEEEEECEEETTSSCS
T ss_pred eeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEE-ecCCCcEEEEEeCCCCceeeEEEeecCCcccccc
Confidence 33222 2333343222245677777432 33444 44457666555543200 00111100 0 1
Q ss_pred ccccceeEEEEcCCCcEEEEEe
Q 043172 480 NLTTKVDFMKFNNDAQILAICS 501 (564)
Q Consensus 480 ~~~~~I~~l~fspdg~~La~~s 501 (564)
.....+..+.+.|||.++++..
T Consensus 333 ~~~~r~~~v~~~pdG~Lyv~~~ 354 (463)
T 2wg3_C 333 YFSGHILGFGEDELGEVYILSS 354 (463)
T ss_dssp CCCSEEEEEEECTTCCEEEEEE
T ss_pred cccCcceEEEECCCCCEEEEec
Confidence 1235789999999999888765
No 349
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.11 E-value=0.046 Score=54.23 Aligned_cols=112 Identities=14% Similarity=0.109 Sum_probs=72.1
Q ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEeeec--CcEEEEEEe--cCCCEEEEE--eCCCeEEEEECCCCceeEEEeecCCc
Q 043172 363 SSVIAFVGNEGYILLVSSKTKELIGTLKMN--GTVRSLAFA--DDGKQLLSS--GGDGQVYHWDLRTRTCIHRAVDEGCI 436 (564)
Q Consensus 363 g~~la~~~~dg~I~lwd~~t~~~~~~~~~~--~~V~~l~~s--pdg~~l~s~--s~dg~V~lwD~~~~~~~~~~~~~~~~ 436 (564)
+.++++++.||.|+-+|..+|+....+... .++....-. +.+..++.+ +.||.|+.++..++.....+....-.
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 347888999999999999999999988754 233221100 112234444 58999999999887554433322111
Q ss_pred ceEEEEEC-----------CCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEcc
Q 043172 437 NGTALCTS-----------PDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIE 479 (564)
Q Consensus 437 ~i~~l~~s-----------p~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~ 479 (564)
...-+... ..+..+++|+.+|.+...|+.++ +.+..+.
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG-----~~~W~~~ 138 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNG-----EIISAFG 138 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTC-----CEEEEES
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCC-----cEEEEEe
Confidence 11001110 13457889999999999999998 7777665
No 350
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.10 E-value=1.3 Score=46.55 Aligned_cols=232 Identities=11% Similarity=0.095 Sum_probs=135.8
Q ss_pred EEEEeCCCeEEEEECCCCceeeeccccccC----------------------CcceE--EEEEc---CCCCEEEEEeC-C
Q 043172 321 AIIAGRRKFFYSLDLVKAKADKIGPLVGRE----------------------EKSLE--FFEVS---PDSSVIAFVGN-E 372 (564)
Q Consensus 321 l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~----------------------~~~v~--~~~~s---pdg~~la~~~~-d 372 (564)
+.+||..|.|+|+-+.+++..+...+.... ..... .+.+. .||++|+.-.. +
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan 152 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN 152 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence 445678888888888887765432211100 00011 23332 26788887764 5
Q ss_pred CeEEEEECCCCcEEEEee--ecCcEEEEEEe--cCCCEEEEEeC-------CCeE------------EEEECCCCceeEE
Q 043172 373 GYILLVSSKTKELIGTLK--MNGTVRSLAFA--DDGKQLLSSGG-------DGQV------------YHWDLRTRTCIHR 429 (564)
Q Consensus 373 g~I~lwd~~t~~~~~~~~--~~~~V~~l~~s--pdg~~l~s~s~-------dg~V------------~lwD~~~~~~~~~ 429 (564)
..|-..++...++-..+. ....+.+++|. |+..++++++. ||.. ...|..+.+...+
T Consensus 153 ~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~Q 232 (638)
T 3sbq_A 153 SRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAFQ 232 (638)
T ss_dssp TEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEEE
T ss_pred cceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEEE
Confidence 789999999888776666 45678888886 67788888874 2221 1123333333322
Q ss_pred EeecCCcceEEEEECCCCCEEEEEeCCC---------------cEEEEeCCccc----CCcce-----eeEEccc-----
Q 043172 430 AVDEGCINGTALCTSPDGTFFAAGSDSG---------------IVNVYNRQEFL----GGKRK-----PIKTIEN----- 480 (564)
Q Consensus 430 ~~~~~~~~i~~l~~sp~g~~lasgs~dg---------------~V~iwd~~~~~----~~~~~-----~~~~~~~----- 480 (564)
+...+. ...+..+++|.|.++.|.+. .+.++++.... .+..+ -+..+.+
T Consensus 233 v~v~gn--ld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~ 310 (638)
T 3sbq_A 233 VIVDGN--LDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDG 310 (638)
T ss_dssp EEESSC--CCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTT
T ss_pred EEcCCC--hhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEccccccc
Confidence 222222 22345577888888776432 36666654210 00000 0111211
Q ss_pred ----------cccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCce-------------eccCCCCCCCCCCcEEEEE
Q 043172 481 ----------LTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNV-------------FSNWPPANRNLQYPRCLDF 537 (564)
Q Consensus 481 ----------~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~-------------~~~~~~~~~~~~~V~~l~f 537 (564)
-....-.+.++|||+++++++.- +.++.++++..... ....+. . -.....+|
T Consensus 311 ~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKL-sptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~---G-lGPlHt~F 385 (638)
T 3sbq_A 311 KDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKL-SPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL---G-LGPLHTTF 385 (638)
T ss_dssp BCCSSEEEEEESSSCCCEEECTTSCEEEEECTT-SSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC---C-SCEEEEEE
T ss_pred cCCceEEEEeCCCCCcceeeCCCCCEEEEcCCC-CCeEEEEEeehhhhhhhccccCcccceEeeccC---C-CcccEEEE
Confidence 11233458899999999988764 78999999874211 111111 1 23578899
Q ss_pred eCCCCEEEEEcCCCeEEEEEcC
Q 043172 538 SPGGGFMAVGNAAGKVFLYKLN 559 (564)
Q Consensus 538 spdg~~Lasgs~dG~V~lw~l~ 559 (564)
.++|....+---|..|.-|++.
T Consensus 386 d~~G~aYTtlfidSqvvkWni~ 407 (638)
T 3sbq_A 386 DGRGNAYTTLFIDSQVVKWNME 407 (638)
T ss_dssp CSSSEEEEEETTTTEEEEEEHH
T ss_pred CCCCceEeeeeecceEEEEecc
Confidence 9999655666689999999985
No 351
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=95.97 E-value=0.86 Score=45.92 Aligned_cols=189 Identities=10% Similarity=-0.041 Sum_probs=90.4
Q ss_pred CCCeeEEEEcC--CCCEEEEEeCCC----cEEEEEecCCCCceeEE---EEe--------CCcCeEEEEEee-C-CCEEE
Q 043172 262 TGPINSVQFHR--NAQLLLVAGLDR----RLRFFQIDGKRNTKIQS---IFL--------EDCPVRKASFLP-D-GSQAI 322 (564)
Q Consensus 262 ~~~V~~l~fsp--dg~~l~s~s~dg----~I~lwd~~~~~~~~~~~---~~~--------~~~~I~~l~fsp-d-g~~l~ 322 (564)
...|.+|++.| .+.+++ ++..+ .|....-.+.+...+.. +.. ....|.++++.| + ...|+
T Consensus 54 ~~~v~~i~~dp~~~~~l~~-g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLM-AARTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEE-EEEC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEE-EecCCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 35699999999 444444 44444 34332211222222111 000 112477888887 2 56677
Q ss_pred EEeCCCeEEEEECCCCceeeecccc---------------ccCCcceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCcEE
Q 043172 323 IAGRRKFFYSLDLVKAKADKIGPLV---------------GREEKSLEFFEVSPD-SSVIAFVGNEGYILLVSSKTKELI 386 (564)
Q Consensus 323 s~~~dg~i~iwdl~~~~~~~~~~~~---------------~~~~~~v~~~~~spd-g~~la~~~~dg~I~lwd~~t~~~~ 386 (564)
+++..+.|+..+-.......+.... +.....+.++.+.|. ...|+++...+.|...+-....+.
T Consensus 133 ~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~DgG~tW~ 212 (394)
T 3b7f_A 133 AGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTDAGTDWK 212 (394)
T ss_dssp EEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESSTTSSCE
T ss_pred EEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECCCCCCce
Confidence 6666666665543333333322111 111235788999883 445555554555554432222332
Q ss_pred EEee-e------------cCcEEEEEEecC-CCEEEEEeCCCeEEEEECCCCceeEEEee-cCC---cceEEEEECCC-C
Q 043172 387 GTLK-M------------NGTVRSLAFADD-GKQLLSSGGDGQVYHWDLRTRTCIHRAVD-EGC---INGTALCTSPD-G 447 (564)
Q Consensus 387 ~~~~-~------------~~~V~~l~~spd-g~~l~s~s~dg~V~lwD~~~~~~~~~~~~-~~~---~~i~~l~~sp~-g 447 (564)
.... . ...+.++.+.|. ...|++++..+ |+..+-. +..-..+.. ... ..+.+++++|. .
T Consensus 213 ~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~D~-G~tW~~~~~~l~~~~~~~~~~i~~~p~~~ 290 (394)
T 3b7f_A 213 PLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMDRR-EGVWKRIGDAMPREVGDIGFPIVVHQRDP 290 (394)
T ss_dssp ECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEETT-TTEEECGGGGSCTTTCSCEEEEEECSSCT
T ss_pred ECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeCCC-CCcceECCCCCCCCCccceEEEEECCCCC
Confidence 2111 0 124889999985 45677766544 5555432 332222221 111 23467888763 3
Q ss_pred CEEEEE
Q 043172 448 TFFAAG 453 (564)
Q Consensus 448 ~~lasg 453 (564)
..|.++
T Consensus 291 ~~l~~~ 296 (394)
T 3b7f_A 291 RTVWVF 296 (394)
T ss_dssp TCEEEE
T ss_pred CEEEEE
Confidence 334444
No 352
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=95.05 E-value=3.2 Score=41.58 Aligned_cols=273 Identities=10% Similarity=0.042 Sum_probs=125.6
Q ss_pred CEEEEEeCCCcEEEEEecC--CCCceeEEEEeCCcCeEEEEEee-CCCEEEEEeCCC----eEEEEECCCCceeeecc--
Q 043172 275 QLLLVAGLDRRLRFFQIDG--KRNTKIQSIFLEDCPVRKASFLP-DGSQAIIAGRRK----FFYSLDLVKAKADKIGP-- 345 (564)
Q Consensus 275 ~~l~s~s~dg~I~lwd~~~--~~~~~~~~~~~~~~~I~~l~fsp-dg~~l~s~~~dg----~i~iwdl~~~~~~~~~~-- 345 (564)
..|++|+..| +.+++.+. .....+. .......|.++++.| +...|++++..+ .|+..+-.......+..
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~-~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~ 100 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRG-PVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPP 100 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEE-EESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBCC
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECC-ccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCccc
Confidence 3566777666 55555432 2222221 123456799999998 334555555444 44443222222222211
Q ss_pred -cccc-------CCcceEEEEEcCC--CCEEEEEeCCCeEEEEECCCCcEEEEee-------------------ecCcEE
Q 043172 346 -LVGR-------EEKSLEFFEVSPD--SSVIAFVGNEGYILLVSSKTKELIGTLK-------------------MNGTVR 396 (564)
Q Consensus 346 -~~~~-------~~~~v~~~~~spd--g~~la~~~~dg~I~lwd~~t~~~~~~~~-------------------~~~~V~ 396 (564)
+... ....|.++++.|. ...|++++..+.|...+-....+..... ....+.
T Consensus 101 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~ 180 (394)
T 3b7f_A 101 AFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMH 180 (394)
T ss_dssp CCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEE
T ss_pred cCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCcee
Confidence 1111 1124778888872 4556666666666655432223322111 123578
Q ss_pred EEEEecC-CCEEEEEeCCCeEEEEECCCCceeEEEeec--C----------CcceEEEEECCC-CCEEEEEeCCCcEEEE
Q 043172 397 SLAFADD-GKQLLSSGGDGQVYHWDLRTRTCIHRAVDE--G----------CINGTALCTSPD-GTFFAAGSDSGIVNVY 462 (564)
Q Consensus 397 ~l~~spd-g~~l~s~s~dg~V~lwD~~~~~~~~~~~~~--~----------~~~i~~l~~sp~-g~~lasgs~dg~V~iw 462 (564)
+|.+.|. ...|+++...+.|+..+- .++.-..+... . ...+.+|+++|. ...|++++..| |...
T Consensus 181 ~i~~d~~~~~~l~vg~~~ggl~~s~D-gG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s 258 (394)
T 3b7f_A 181 SILVDPRDPKHLYIGMSSGGVFESTD-AGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRM 258 (394)
T ss_dssp EEEECTTCTTCEEEEEETBEEEEESS-TTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEE
T ss_pred EEEECCCCCCEEEEEECCCCEEEECC-CCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEe
Confidence 9999883 445666655555554432 22222222110 0 124788999886 35666676554 4433
Q ss_pred eCCcccCCcceeeEE-ccc-cccceeEEEEcCC-CcEEEEEecCC---------CCeEEEEEcCC-CceeccC----CCC
Q 043172 463 NRQEFLGGKRKPIKT-IEN-LTTKVDFMKFNND-AQILAICSTMK---------KNSLKLIHIPS-YNVFSNW----PPA 525 (564)
Q Consensus 463 d~~~~~~~~~~~~~~-~~~-~~~~I~~l~fspd-g~~La~~s~~~---------d~~I~lwdl~s-~~~~~~~----~~~ 525 (564)
+-.. ...+.+.. +.. ....+.+++++|. ...|.++.... ++...||.... +.....+ |..
T Consensus 259 ~D~G---~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~ 335 (394)
T 3b7f_A 259 DRRE---GVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTD 335 (394)
T ss_dssp ETTT---TEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCS
T ss_pred CCCC---CcceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCc
Confidence 3211 11122211 111 0023567888763 34444443210 22345555443 2222221 211
Q ss_pred CCCC-CCcEEEEEeCC-CCEEEEEcCCCeEE
Q 043172 526 NRNL-QYPRCLDFSPG-GGFMAVGNAAGKVF 554 (564)
Q Consensus 526 ~~~~-~~V~~l~fspd-g~~Lasgs~dG~V~ 554 (564)
..-. ....+++++|. ...|++++..|.|.
T Consensus 336 ~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~ 366 (394)
T 3b7f_A 336 QAWLTVKRQAMTADAHAPVGVYFGTTGGEIW 366 (394)
T ss_dssp SCCCCCCTBSEEECCSSSCCEEEECTTSCEE
T ss_pred cccceEEEEEEEECCCCCCEEEEEeCCCeEE
Confidence 0000 11246888874 34566676666554
No 353
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=94.41 E-value=4.1 Score=39.84 Aligned_cols=243 Identities=8% Similarity=0.046 Sum_probs=127.2
Q ss_pred eCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECC---------CCcEE
Q 043172 316 PDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSK---------TKELI 386 (564)
Q Consensus 316 pdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~---------t~~~~ 386 (564)
|+...+++.+.+|+|+--.+..-.......+.-.....+..+........|++.++.|.++-+... .|.++
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i 82 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHI 82 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEG
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcCh
Confidence 456678888999999876543211000001111122245555555556677777788887776652 12221
Q ss_pred EE---eeecCcEEEEEEecC---CCEEEEEeCCCeEEEEECCCC------ceeEEEeecCCcceEEEEECCCCCEEEEEe
Q 043172 387 GT---LKMNGTVRSLAFADD---GKQLLSSGGDGQVYHWDLRTR------TCIHRAVDEGCINGTALCTSPDGTFFAAGS 454 (564)
Q Consensus 387 ~~---~~~~~~V~~l~~spd---g~~l~s~s~dg~V~lwD~~~~------~~~~~~~~~~~~~i~~l~~sp~g~~lasgs 454 (564)
.. +.....|.++...++ +.+|+.++..|.++...+..- .-+..+.......+..+........|+..+
T Consensus 83 ~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l~T 162 (323)
T 1wp5_A 83 ANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFLVT 162 (323)
T ss_dssp GGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEEEE
T ss_pred hhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEEEEEe
Confidence 11 112345665543332 567899999999999887421 111111111112344444444556788899
Q ss_pred CCCcEEEEeCCccc--CCcceeeEEccc-cccceeEEEEcCCCc-EEEEEecCCCCeEEEEEcCCCce-------eccCC
Q 043172 455 DSGIVNVYNRQEFL--GGKRKPIKTIEN-LTTKVDFMKFNNDAQ-ILAICSTMKKNSLKLIHIPSYNV-------FSNWP 523 (564)
Q Consensus 455 ~dg~V~iwd~~~~~--~~~~~~~~~~~~-~~~~I~~l~fspdg~-~La~~s~~~d~~I~lwdl~s~~~-------~~~~~ 523 (564)
..|.+..+...... +...+-++.+.- ....|.++...+++. .|++.+. .|..+..++..... ...+.
T Consensus 163 ~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~--~G~gKr~~~~e~~~~~Rg~kGv~~~~ 240 (323)
T 1wp5_A 163 HNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQ--RGAVKKMKLTEFEKATRAKRGVVILR 240 (323)
T ss_dssp TTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEET--TSEEEEEEGGGSCCCCTTSCCEECSC
T ss_pred CCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEEC--CCceEEEEHHHccccCCCCCCEECee
Confidence 99999888876431 111122222211 224455554444444 6777777 78888877754211 11121
Q ss_pred CCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCC
Q 043172 524 PANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNH 560 (564)
Q Consensus 524 ~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~ 560 (564)
........+.++....++..++..+..|.+....+..
T Consensus 241 ~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 241 ELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp CCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGGG
T ss_pred ecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhhh
Confidence 1111112344333333345566667788877667654
No 354
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=92.29 E-value=10 Score=37.94 Aligned_cols=172 Identities=13% Similarity=0.160 Sum_probs=98.8
Q ss_pred eEEEEECCCC--ceeeecccccc---CCcceEEEEEc---CC----CCEEEEEe-CCCeEEEEECCCCcEEEEee----e
Q 043172 329 FFYSLDLVKA--KADKIGPLVGR---EEKSLEFFEVS---PD----SSVIAFVG-NEGYILLVSSKTKELIGTLK----M 391 (564)
Q Consensus 329 ~i~iwdl~~~--~~~~~~~~~~~---~~~~v~~~~~s---pd----g~~la~~~-~dg~I~lwd~~t~~~~~~~~----~ 391 (564)
.|.+||+.++ +..+...+... ....+..+.+. |. +.+++.+. ..+.|.|+|+.+++.-+.+. .
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5667788877 66554444321 12357778877 22 34444444 35789999999887655442 0
Q ss_pred ---------------cCcEEEEEEecC----CCEEEEEeCCC-eEEEEE---CCCC---ceeEEEeecC-CcceEEEEEC
Q 043172 392 ---------------NGTVRSLAFADD----GKQLLSSGGDG-QVYHWD---LRTR---TCIHRAVDEG-CINGTALCTS 444 (564)
Q Consensus 392 ---------------~~~V~~l~~spd----g~~l~s~s~dg-~V~lwD---~~~~---~~~~~~~~~~-~~~i~~l~~s 444 (564)
...|..|+++|+ ++.|+.+...+ .++-.. ++.. ..+..+-..+ ......+++.
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D 283 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYD 283 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEEC
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEe
Confidence 236788899987 67777766544 333332 1221 2222222222 1234566775
Q ss_pred -CCCCEEEEEeCCCcEEEEeCCc-ccC-CcceeeEEccccccceeEEEEcCCCcEEEEEe
Q 043172 445 -PDGTFFAAGSDSGIVNVYNRQE-FLG-GKRKPIKTIENLTTKVDFMKFNNDAQILAICS 501 (564)
Q Consensus 445 -p~g~~lasgs~dg~V~iwd~~~-~~~-~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s 501 (564)
.+|.++++--....|..|+... ... .+...+..-. .-.++..+.+.++|.+.++++
T Consensus 284 ~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~-~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 284 PKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSS-RFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp TTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECT-TCCSEEEEEECTTSCEEEEEC
T ss_pred CCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECC-CccccCeEEECCCCeEEEEEC
Confidence 6787777778888999999875 210 1112222222 334677788877776555554
No 355
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=92.13 E-value=9.1 Score=37.11 Aligned_cols=197 Identities=9% Similarity=0.079 Sum_probs=112.6
Q ss_pred cCCCCEEEEEeCCCcEEEEEecCCCCc-----eeEEEE-eCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCC---Cce-
Q 043172 271 HRNAQLLLVAGLDRRLRFFQIDGKRNT-----KIQSIF-LEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVK---AKA- 340 (564)
Q Consensus 271 spdg~~l~s~s~dg~I~lwd~~~~~~~-----~~~~~~-~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~---~~~- 340 (564)
-|+..++++.+.+|.|+--.+..-... -+..+. .....+..+........++..+..|.++-+.... ...
T Consensus 5 i~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 5 MQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp ---CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred cCCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 356678899999999998776532111 111111 1234455555556667888888889877766431 100
Q ss_pred ---eeec-cccccCCcceEEEEEcC---CCCEEEEEeCCCeEEEEECCCCc-------EEEEeeecCcEEEEEEecCCCE
Q 043172 341 ---DKIG-PLVGREEKSLEFFEVSP---DSSVIAFVGNEGYILLVSSKTKE-------LIGTLKMNGTVRSLAFADDGKQ 406 (564)
Q Consensus 341 ---~~~~-~~~~~~~~~v~~~~~sp---dg~~la~~~~dg~I~lwd~~t~~-------~~~~~~~~~~V~~l~~spdg~~ 406 (564)
.++. .+.-.....|..+...+ +..+|++++..|.++...+.... ....+...+.+..+........
T Consensus 85 ~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~~~~ 164 (312)
T 1suu_A 85 SKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKDEK 164 (312)
T ss_dssp ---CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECTTCE
T ss_pred CCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCCCCE
Confidence 0110 11111112344443332 46778888999999998874322 1112223456666666555667
Q ss_pred EEEEeCCCeEEEEECCCCc-------eeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcc
Q 043172 407 LLSSGGDGQVYHWDLRTRT-------CIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEF 467 (564)
Q Consensus 407 l~s~s~dg~V~lwD~~~~~-------~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~ 467 (564)
++..+.+|.+..+.+..-. -+..+.......+..+..-.++..+++.+..|.+....+...
T Consensus 165 i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~ 232 (312)
T 1suu_A 165 VICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKI 232 (312)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGS
T ss_pred EEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHHh
Confidence 8888999999998875311 111222222334555555455667889999999999888654
No 356
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=92.02 E-value=16 Score=39.80 Aligned_cols=239 Identities=9% Similarity=0.022 Sum_probs=123.0
Q ss_pred CeeEEE-EcCCCCEEEEEe-C----CCcEEEEEecCCCCceeE-EEE-eCCc------CeEEEEEeeCCCEEEEEe----
Q 043172 264 PINSVQ-FHRNAQLLLVAG-L----DRRLRFFQIDGKRNTKIQ-SIF-LEDC------PVRKASFLPDGSQAIIAG---- 325 (564)
Q Consensus 264 ~V~~l~-fspdg~~l~s~s-~----dg~I~lwd~~~~~~~~~~-~~~-~~~~------~I~~l~fspdg~~l~s~~---- 325 (564)
....+. ++|++++++.+- . -..|+++|+.++. .+. .+. ..++ ....++|..+ ..++.+.
T Consensus 130 ~~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~--~~~~~~~~~~k~~~~~~~~~~~~~W~d~-~~~~~~~~~~~ 206 (711)
T 4hvt_A 130 AYRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKD--FVKNGFEPITNSGKLLEGKFTYPTWINK-DTIIFNLVLHK 206 (711)
T ss_dssp EEEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTE--ECTTCSCCBCTTCCBCCEETCCEEEEET-TEEEECCCCST
T ss_pred EEeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCC--cCCCCcccccccccccccccceeeEECC-CEEEEEeCCCC
Confidence 455666 899999876652 2 2378999987542 211 001 0000 1134478744 3444432
Q ss_pred -------CCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCE-----EEEEeC---CCeEEEEECCC--CcEEEE
Q 043172 326 -------RRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSV-----IAFVGN---EGYILLVSSKT--KELIGT 388 (564)
Q Consensus 326 -------~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~-----la~~~~---dg~I~lwd~~t--~~~~~~ 388 (564)
.-..|+.|.+.+....-..-+.+...........++++++ +++.+. ...+++.++.. +++..
T Consensus 207 ~~~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~- 285 (711)
T 4hvt_A 207 NEITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQK- 285 (711)
T ss_dssp TCBCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEE-
T ss_pred CCcCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceE-
Confidence 2356888988776432221122222222334556677662 343331 25677777653 43333
Q ss_pred eeecCcEEEEEEecCCCEEEEE----------eCCCeEEEEECCCCc-------eeEE-EeecCCcceEEEEECCCCCEE
Q 043172 389 LKMNGTVRSLAFADDGKQLLSS----------GGDGQVYHWDLRTRT-------CIHR-AVDEGCINGTALCTSPDGTFF 450 (564)
Q Consensus 389 ~~~~~~V~~l~~spdg~~l~s~----------s~dg~V~lwD~~~~~-------~~~~-~~~~~~~~i~~l~~sp~g~~l 450 (564)
+...... .+..+.++.+++.. ...+.|...++..+. .... +.......+..+.+..+ .++
T Consensus 286 l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~ 363 (711)
T 4hvt_A 286 INMPSDA-TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVF 363 (711)
T ss_dssp CCSCTTC-EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEE
T ss_pred eecCCcc-eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEE
Confidence 2222211 12344556555532 146778999987631 1222 44444556778888865 577
Q ss_pred EEEeCCCc--EEEEeCCcccCCcce-eeEE---ccccccceeEEEEcCCCcEEE-EE-ecCCCCeEEEEEcC
Q 043172 451 AAGSDSGI--VNVYNRQEFLGGKRK-PIKT---IENLTTKVDFMKFNNDAQILA-IC-STMKKNSLKLIHIP 514 (564)
Q Consensus 451 asgs~dg~--V~iwd~~~~~~~~~~-~~~~---~~~~~~~I~~l~fspdg~~La-~~-s~~~d~~I~lwdl~ 514 (564)
++...++. |.++++..+ . .+.. +.. .+.+..+.+++++..++ +. +......+..+++.
T Consensus 364 ~~~~~~~~~~l~~~~~~~g-----~~~~~~~i~lp~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 364 LATYDNVVAKVVTFTLENE-----QWTKPVVLKLPY-QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEEETTEEEEEEECEETT-----EECCCEEECCCS-TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEEECCEEEEEEEECCCC-----ceEEEeccCCCC-CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 77777765 566665443 1 1222 221 24566666677765444 33 32235678888876
No 357
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=91.32 E-value=13 Score=37.10 Aligned_cols=198 Identities=10% Similarity=0.069 Sum_probs=111.1
Q ss_pred EcCCCCEEEEEeCCCcEEEEEecCC----C-CceeEEEEe-CCcCeEEEEEeeCCCEEEEEeCCCeEEEEEC---CCC--
Q 043172 270 FHRNAQLLLVAGLDRRLRFFQIDGK----R-NTKIQSIFL-EDCPVRKASFLPDGSQAIIAGRRKFFYSLDL---VKA-- 338 (564)
Q Consensus 270 fspdg~~l~s~s~dg~I~lwd~~~~----~-~~~~~~~~~-~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl---~~~-- 338 (564)
+-|+..++++.+.+|.|+--.+..- . +.-+..+.. ....+..+........|+..+..|.++-+.. ...
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r 82 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGS 82 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCc
Confidence 3477889999999999997655310 0 111222222 2445556655666677887788887776653 221
Q ss_pred --ceeeeccc-c-ccCCcceEEEEEcC--CCCEEEEEeCCCeEEEEECCCCc-----EEE--EeeecCcEEEEEEecCCC
Q 043172 339 --KADKIGPL-V-GREEKSLEFFEVSP--DSSVIAFVGNEGYILLVSSKTKE-----LIG--TLKMNGTVRSLAFADDGK 405 (564)
Q Consensus 339 --~~~~~~~~-~-~~~~~~v~~~~~sp--dg~~la~~~~dg~I~lwd~~t~~-----~~~--~~~~~~~V~~l~~spdg~ 405 (564)
.-.++..+ . ......+..+.+.. ...+|++++..|.++...+.... -+. .+.....+..+.......
T Consensus 83 ~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~~~~ 162 (370)
T 3l6v_A 83 NARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGDR 162 (370)
T ss_dssp TSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEECSCC
T ss_pred ccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeCCCc
Confidence 11111111 1 11222333444432 45689999999999998864321 122 222344555555555556
Q ss_pred EEEEEeCCCeEEEEECCCCce-------eEEEeecCCcceEEEEECC---------------------------------
Q 043172 406 QLLSSGGDGQVYHWDLRTRTC-------IHRAVDEGCINGTALCTSP--------------------------------- 445 (564)
Q Consensus 406 ~l~s~s~dg~V~lwD~~~~~~-------~~~~~~~~~~~i~~l~~sp--------------------------------- 445 (564)
.|+..+..|.+..+....-.. +.-+.......+.++...+
T Consensus 163 ~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~~ 242 (370)
T 3l6v_A 163 DVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVAD 242 (370)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEECCC-------------------------------
T ss_pred eEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCCCCEEEEEEEecccccccccccccccccccccccccccccccccc
Confidence 788888899888887643111 1111112222344443333
Q ss_pred --CCCEEEEEeCCCcEEEEeCCcc
Q 043172 446 --DGTFFAAGSDSGIVNVYNRQEF 467 (564)
Q Consensus 446 --~g~~lasgs~dg~V~iwd~~~~ 467 (564)
.+.++++.+..|..+...+...
T Consensus 243 ~~~~~~il~vTe~G~gKrt~~~e~ 266 (370)
T 3l6v_A 243 NGDVAYILTATENGYGKRTPLAEY 266 (370)
T ss_dssp ----CEEEEEETTSEEEEEEGGGS
T ss_pred ccCCceEEEeeCCCCEEEEEHHHh
Confidence 4568999999999998887654
No 358
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=91.27 E-value=12 Score=36.63 Aligned_cols=238 Identities=9% Similarity=0.032 Sum_probs=128.1
Q ss_pred CEEEEEeCCCeEEEEECCCCcee-----eeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEEC---CC------Cc
Q 043172 319 SQAIIAGRRKFFYSLDLVKAKAD-----KIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSS---KT------KE 384 (564)
Q Consensus 319 ~~l~s~~~dg~i~iwdl~~~~~~-----~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~---~t------~~ 384 (564)
..+++.+..|+|+--.+.+-... -...+.-.....+..+........|++-++.|.++.... .. |.
T Consensus 4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~ 83 (327)
T 3uc1_A 4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQ 83 (327)
T ss_dssp EEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCE
T ss_pred cEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCE
Confidence 35677788888886654321100 001111111223555555555566666677787776653 22 22
Q ss_pred EEEE---eeecCcEEEEEEec---CCCEEEEEeCCCeEEEEECCCCce-----eEEEeecCCcceEEEEECCCCCEEEEE
Q 043172 385 LIGT---LKMNGTVRSLAFAD---DGKQLLSSGGDGQVYHWDLRTRTC-----IHRAVDEGCINGTALCTSPDGTFFAAG 453 (564)
Q Consensus 385 ~~~~---~~~~~~V~~l~~sp---dg~~l~s~s~dg~V~lwD~~~~~~-----~~~~~~~~~~~i~~l~~sp~g~~lasg 453 (564)
++.. +.....|.++...+ +..+++.++..|.|+...+..... +..+.......+..+........|+..
T Consensus 84 ~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill~ 163 (327)
T 3uc1_A 84 HVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLV 163 (327)
T ss_dssp EHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEEE
T ss_pred EHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEEE
Confidence 2111 11234566554443 477999999999999988754221 111111112234444444455688889
Q ss_pred eCCCcEEEEeCC--ccc--C--CcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCcee-------c
Q 043172 454 SDSGIVNVYNRQ--EFL--G--GKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVF-------S 520 (564)
Q Consensus 454 s~dg~V~iwd~~--~~~--~--~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~-------~ 520 (564)
+..|.+..+... ... + ....+.-.+. ....|.++...+.+.+|++++. .|.++...+...... .
T Consensus 164 T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~--~G~~Krt~l~e~~~~~R~~~G~~ 240 (327)
T 3uc1_A 164 SANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATS--GGYAKRTAIEEYPVQGRGGKGVL 240 (327)
T ss_dssp ETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEET--TSEEEEEEGGGSCBCCTTSCCEE
T ss_pred ECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeC--CCcEEEEEHHHccccCcCCCcEE
Confidence 999998888776 321 0 1111222222 2345666666666678888887 899998887543322 1
Q ss_pred cCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCC
Q 043172 521 NWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNH 560 (564)
Q Consensus 521 ~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~ 560 (564)
.+.... ..+.+-.+....+...++..+..|.+..+.+..
T Consensus 241 ~~~l~~-~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 241 TVMYDR-RRGRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp SSCCCT-TTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred EEEecC-CCCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 222111 113344444444455666677788887776643
No 359
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=91.16 E-value=13 Score=37.06 Aligned_cols=235 Identities=9% Similarity=0.039 Sum_probs=120.0
Q ss_pred CCCEEEEEeCCCeEEEEECCCC-c--------eeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCC-c--
Q 043172 317 DGSQAIIAGRRKFFYSLDLVKA-K--------ADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTK-E-- 384 (564)
Q Consensus 317 dg~~l~s~~~dg~i~iwdl~~~-~--------~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~-~-- 384 (564)
.....++...+|.|+.|-.... + ......+.......+..++++....+.+....+|.|+.|-.... +
T Consensus 61 G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG 140 (389)
T 3kci_A 61 GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 140 (389)
T ss_dssp ETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTC
T ss_pred CCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCC
Confidence 3455666677888999864431 1 00011111122224566777777777777788999999965321 1
Q ss_pred -----EE---EEee--ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCC-c----------eeEEEeecCCcceEEEEE
Q 043172 385 -----LI---GTLK--MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTR-T----------CIHRAVDEGCINGTALCT 443 (564)
Q Consensus 385 -----~~---~~~~--~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~-~----------~~~~~~~~~~~~i~~l~~ 443 (564)
.. ..+. ....|..++.. ....++...+|.|+.|-.... + ....+.......+..++.
T Consensus 141 ~g~~~~~~~p~~v~~l~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~ 218 (389)
T 3kci_A 141 HGNRSPCDRPRVIESLRGIEVVDVAAG--GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIAC 218 (389)
T ss_dssp SSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEE
T ss_pred CCCCccCcCCeEecccCCCeEEEEEeC--cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEE
Confidence 11 1111 12256666554 445666678999999975431 1 011111122335666766
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCcccC-------CcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCC
Q 043172 444 SPDGTFFAAGSDSGIVNVYNRQEFLG-------GKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSY 516 (564)
Q Consensus 444 sp~g~~lasgs~dg~V~iwd~~~~~~-------~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~ 516 (564)
.....+.++-..+|.|+.|-...... ....|...-......|..|+.... +.++-.. ++.|+.|-....
T Consensus 219 G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~--hs~alt~--~G~v~~wG~n~~ 294 (389)
T 3kci_A 219 GSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQ--FSVALTK--SGAVYTWGKGDY 294 (389)
T ss_dssp CCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETT--EEEEEET--TSCEEEEECCGG
T ss_pred cCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCC--EEEEEeC--CCeEEEEeCCCC
Confidence 54445677778899999997654210 001121111111223555554322 2333344 778888865321
Q ss_pred cee-----------ccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCCC
Q 043172 517 NVF-----------SNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNHY 561 (564)
Q Consensus 517 ~~~-----------~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~~ 561 (564)
..+ ..++.. ....|..++. ...+.++...+|.|+.|=.+.+
T Consensus 295 GqLG~g~~~~~~~P~~v~~l--~~~~v~~ia~--G~~h~~al~~~G~v~~wG~n~~ 346 (389)
T 3kci_A 295 HRLGHGSDDHVRRPRQVQGL--QGKKVIAIAT--GSLHCVCCTEDGEVYTWGDNDE 346 (389)
T ss_dssp GTTCSSSCCCEEEEEECGGG--TTCCEEEEEE--CSSEEEEEETTCCEEEEECCTT
T ss_pred CCCCCCCCccccCCeEeccC--CCCCEEEEEe--ccCeEEEECCCCCEEEeeCCCC
Confidence 111 111110 1123545544 3345555578899999987654
No 360
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=90.65 E-value=12 Score=35.59 Aligned_cols=203 Identities=14% Similarity=0.085 Sum_probs=113.2
Q ss_pred CcCeEEEEEeeCCCEEEEEeCCCeEEEE---ECCCCceeeeccccccCCcceEEEEEcC-CCCEEEEEeCCCeEEEEECC
Q 043172 306 DCPVRKASFLPDGSQAIIAGRRKFFYSL---DLVKAKADKIGPLVGREEKSLEFFEVSP-DSSVIAFVGNEGYILLVSSK 381 (564)
Q Consensus 306 ~~~I~~l~fspdg~~l~s~~~dg~i~iw---dl~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~la~~~~dg~I~lwd~~ 381 (564)
...+..+.......+|+.-+..|.++.. ++..+....+ +.. . ..|..+.... +..++++++..|.|+...+.
T Consensus 23 gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~l--l~~-~-e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~ 98 (276)
T 3no0_A 23 KAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSL--KSR-E-EKIVGAFIREKFGNRLLLATKKGYVKKIPLA 98 (276)
T ss_dssp CCCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCC--SST-T-CCEEEEEEGGGSCSEEEEEETTSEEEEEEGG
T ss_pred CCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCccccc--CCC-C-CEEEEEECCcCCCCEEEEEeCCCEEEEEEHH
Confidence 4456565555556667767777776653 3332221111 222 2 2455543322 46789999999999999875
Q ss_pred CCc------EEEEeeecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCC-------ceeEEEeecCCcceEEEEECCCCC
Q 043172 382 TKE------LIGTLKMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTR-------TCIHRAVDEGCINGTALCTSPDGT 448 (564)
Q Consensus 382 t~~------~~~~~~~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~-------~~~~~~~~~~~~~i~~l~~sp~g~ 448 (564)
.-. ....++....+..+........|+..+..|.++.+....- +-+.-+.......+..+...+++.
T Consensus 99 ~~~~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~ 178 (276)
T 3no0_A 99 EFEYKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGEP 178 (276)
T ss_dssp GTTTCSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESSCS
T ss_pred HhhhhcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCCC
Confidence 432 1112223455666655555667888899999988876321 111111112223455555445567
Q ss_pred EEEEEeCCCcEEEEeCCcccC--CcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEE--EEcCC
Q 043172 449 FFAAGSDSGIVNVYNRQEFLG--GKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKL--IHIPS 515 (564)
Q Consensus 449 ~lasgs~dg~V~iwd~~~~~~--~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~l--wdl~s 515 (564)
+++..+..|.++...+..... ...+-+..+ .....+..+........++..+. +|.+.. +++..
T Consensus 179 ~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~--~G~~ir~~~~~~~ 246 (276)
T 3no0_A 179 YLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTK--NGKAFYDKINQKD 246 (276)
T ss_dssp EEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEET--TSCEEEEEEEGGG
T ss_pred EEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcC--CCeEEEeeeCHHH
Confidence 889999999999888765421 111223333 22344544444333445555555 677766 76643
No 361
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=90.45 E-value=12 Score=35.50 Aligned_cols=223 Identities=13% Similarity=0.017 Sum_probs=112.6
Q ss_pred CeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCC-CcEE
Q 043172 308 PVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKT-KELI 386 (564)
Q Consensus 308 ~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t-~~~~ 386 (564)
.|..++... .+.++.. ++.++.|-.......-+. . .....|..++.... ..++. . +|.|+.|-... +++-
T Consensus 25 ~i~~ia~G~--~h~~~l~-~G~v~~wG~n~~Gqlg~p-~--~~~~~i~~ia~G~~-hs~~l-~-~G~v~~wG~n~~Gqlg 95 (282)
T 3qhy_B 25 GVDAIAGGY--FHGLALK-GGKVLGWGANLNGQLTMP-A--ATQSGVDAIAAGNY-HSLAL-K-DGEVIAWGGNEDGQTT 95 (282)
T ss_dssp SCCEEEECS--SEEEEEE-TTEEEEEECCSSSTTSCC-G--GGGSCCCEEEECSS-EEEEE-E-TTEEEEEECCTTSTTC
T ss_pred CCcEEEeCC--CeEEEEE-CCEEEEEeCCCCCCCCCC-c--cCCCCEEEEEeCCC-EEEEE-E-CCEEEEeeCCCCCCCC
Confidence 455555432 2333335 889999976543211111 1 11124555655433 23333 4 89999997653 2211
Q ss_pred EEeeecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCc
Q 043172 387 GTLKMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQE 466 (564)
Q Consensus 387 ~~~~~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~ 466 (564)
........|..++.... ..+... +|.|+.|-......+.. .......+..++.... +.+.-. +|.|..|-...
T Consensus 96 ~P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~-~~~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG~n~ 168 (282)
T 3qhy_B 96 VPAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTV-PAEAQSGVTALDGGVY--TALAVK-NGGVIAWGDNY 168 (282)
T ss_dssp CCGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSC-CGGGGSSEEEEEECSS--EEEEEE-TTEEEEEECCT
T ss_pred CCcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCC-CccCCCCeEEEEcccC--EEEEEE-CCEEEEecCCC
Confidence 11112346777777643 344445 89999998765322211 1112234666655433 333334 79999998765
Q ss_pred ccCCcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEE
Q 043172 467 FLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAV 546 (564)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Las 546 (564)
.. ....| ......|..|+..... .++. . ++.|..|-......+. .| ......|..++..... .++.
T Consensus 169 ~g-qlg~p----~~~~~~v~~i~~G~~h-s~al--~--~G~v~~wG~n~~gqlg-~p--~~~~~~v~~i~~G~~h-~~al 234 (282)
T 3qhy_B 169 FG-QTTVP----AEAQSGVDDVAGGIFH-SLAL--K--DGKVIAWGDNRYKQTT-VP--TEALSGVSAIASGEWY-SLAL 234 (282)
T ss_dssp TS-TTSCC----GGGGSSEEEEEECSSE-EEEE--E--TTEEEEEECCTTSTTC-CC--GGGGSSCCEEEECSSC-EEEE
T ss_pred CC-CCCCc----eecCCCeEEEEecCCE-EEEE--E--CCeEEEEECCCCCCCC-CC--cccCCCceEEEcCCCE-EEEE
Confidence 31 00111 1113456666654332 2333 3 7889998765432221 11 1112456777665543 3333
Q ss_pred EcCCCeEEEEEcCCCC
Q 043172 547 GNAAGKVFLYKLNHYH 562 (564)
Q Consensus 547 gs~dG~V~lw~l~~~~ 562 (564)
. +|.|+.|-.+.+.
T Consensus 235 ~--~g~v~~wG~n~~g 248 (282)
T 3qhy_B 235 K--NGKVIAWGSSRTA 248 (282)
T ss_dssp E--TTEEEEESTTCCC
T ss_pred E--CCEEEEecCCCCc
Confidence 3 8999999766543
No 362
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=89.15 E-value=19 Score=35.79 Aligned_cols=239 Identities=7% Similarity=0.010 Sum_probs=126.5
Q ss_pred eeCCCEEEEEeCCCeEEEEECCCC-------ceeeeccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECC------
Q 043172 315 LPDGSQAIIAGRRKFFYSLDLVKA-------KADKIGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSK------ 381 (564)
Q Consensus 315 spdg~~l~s~~~dg~i~iwdl~~~-------~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~------ 381 (564)
-|+..++++.+.+|+|+--.+..- +-..-..+. ....+..+........|++.++.|.++.+...
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk--e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~ 81 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK--EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAG 81 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS--CCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCC
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC--CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCC
Confidence 366778999999999997654321 111111121 22245555555566677777788888776542
Q ss_pred ---CCcEEEE---eeecCcEEEEEEec---CCCEEEEEeCCCeEEEEECCCCce-----eEEEeecCCcceEEEEECCCC
Q 043172 382 ---TKELIGT---LKMNGTVRSLAFAD---DGKQLLSSGGDGQVYHWDLRTRTC-----IHRAVDEGCINGTALCTSPDG 447 (564)
Q Consensus 382 ---t~~~~~~---~~~~~~V~~l~~sp---dg~~l~s~s~dg~V~lwD~~~~~~-----~~~~~~~~~~~i~~l~~sp~g 447 (564)
.|..+.. +.....|.++...+ .+.+|+.++..|.++...+..... +..+.......+..+......
T Consensus 82 r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~~~ 161 (370)
T 3l6v_A 82 SNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGD 161 (370)
T ss_dssp TTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEECSC
T ss_pred cccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeCCC
Confidence 1222111 22334566554432 356899999999999988643211 111111112233444444455
Q ss_pred CEEEEEeCCCcEEEEeCCccc--CCcceeeE--EccccccceeEEEEcC-------------------------------
Q 043172 448 TFFAAGSDSGIVNVYNRQEFL--GGKRKPIK--TIENLTTKVDFMKFNN------------------------------- 492 (564)
Q Consensus 448 ~~lasgs~dg~V~iwd~~~~~--~~~~~~~~--~~~~~~~~I~~l~fsp------------------------------- 492 (564)
..|+..+..|.+..|...... +....-++ .+. ....|.++...+
T Consensus 162 ~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~ 240 (370)
T 3l6v_A 162 RDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLA-KGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDV 240 (370)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEECCC-----------------------------
T ss_pred ceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeC-CCCEEEEEEEecccccccccccccccccccccccccccccccc
Confidence 678888999998888765431 00001111 111 123444444333
Q ss_pred ----CCcEEEEEecCCCCeEEEEEcCCCce-------eccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q 043172 493 ----DAQILAICSTMKKNSLKLIHIPSYNV-------FSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLN 559 (564)
Q Consensus 493 ----dg~~La~~s~~~d~~I~lwdl~s~~~-------~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~ 559 (564)
.++.|++.+. .|..+...+..... +..+.... ..+.+.++.+..+...++..+..|.+.-..+.
T Consensus 241 ~~~~~~~~il~vTe--~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~-~~g~lv~~~~v~~~d~i~liT~~G~~iR~~v~ 315 (370)
T 3l6v_A 241 ADNGDVAYILTATE--NGYGKRTPLAEYPRKGRGTQGVIGIQTTE-RNGKLVRAVLLGSTDEVMLISDGGTLVRTRGS 315 (370)
T ss_dssp ------CEEEEEET--TSEEEEEEGGGSCCBCTTSCCEESSCCCT-TTCSEEEEEEECTTCEEEEEETTCCEEEEEGG
T ss_pred ccccCCceEEEeeC--CCCEEEEEHHHhcccccCCcceEEEEecC-CCCcEEEEEEeCCCceEEEEcCCCeEEEeeHh
Confidence 4567888887 88988888754322 22222211 12344444443444455556677776655554
No 363
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=88.93 E-value=17 Score=35.02 Aligned_cols=240 Identities=10% Similarity=0.028 Sum_probs=124.5
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceee-----eccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECC---C------
Q 043172 317 DGSQAIIAGRRKFFYSLDLVKAKADK-----IGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSK---T------ 382 (564)
Q Consensus 317 dg~~l~s~~~dg~i~iwdl~~~~~~~-----~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~---t------ 382 (564)
+...+++.+.+|+|+--.+..-...+ ...+.-.....+..+........|++.++.|.++-+... .
T Consensus 2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~ 81 (307)
T 1zi0_A 2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGAR 81 (307)
T ss_dssp CCEEEEEEETTSEEEEEECC--------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSC
T ss_pred CCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCC
Confidence 45577888999999877665422111 000111122234444444556667777788887776542 1
Q ss_pred CcEEE---EeeecCcEEEEEEe---cCCCEEEEEeCCCeEEEEECCCCc-----eeEEEeecCCcceEEEEECCCCCEEE
Q 043172 383 KELIG---TLKMNGTVRSLAFA---DDGKQLLSSGGDGQVYHWDLRTRT-----CIHRAVDEGCINGTALCTSPDGTFFA 451 (564)
Q Consensus 383 ~~~~~---~~~~~~~V~~l~~s---pdg~~l~s~s~dg~V~lwD~~~~~-----~~~~~~~~~~~~i~~l~~sp~g~~la 451 (564)
|.++. .+.....|.++... .++.+++.++..|.++...+..-. -+..+.......+..+........|+
T Consensus 82 G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~~~~i~ 161 (307)
T 1zi0_A 82 GRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVM 161 (307)
T ss_dssp CEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECTTCEEE
T ss_pred CeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCCCCEEE
Confidence 22211 12233456665442 345678899999999998774211 11111111112344444444556788
Q ss_pred EEeCCCcEEEEeCCccc--CCcceeeE--EccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCce-------ec
Q 043172 452 AGSDSGIVNVYNRQEFL--GGKRKPIK--TIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNV-------FS 520 (564)
Q Consensus 452 sgs~dg~V~iwd~~~~~--~~~~~~~~--~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~-------~~ 520 (564)
..+..|.+..+...... +....-+. .+. ....|.++...+++..|++.+. .|.++-..+..... ..
T Consensus 162 l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~--~G~~Kr~~~~e~~~~~Rg~kG~~ 238 (307)
T 1zi0_A 162 LFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQ--NGYGKRTAVAEYPTKSRATKGVI 238 (307)
T ss_dssp EEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEET--TSEEEEECGGGSCCCCTTSCCEE
T ss_pred EECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEc--CCceEEEEHHHhccCCCCCCCEE
Confidence 88999998888775431 01011111 222 2345656655555666777777 78888887743221 11
Q ss_pred cCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCC
Q 043172 521 NWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNH 560 (564)
Q Consensus 521 ~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~ 560 (564)
.+.. ....+.+-.+....+...|+..+.+|.+.-+.+..
T Consensus 239 ~~~~-~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 239 SIKV-TERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp SSCC-CTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred eeEe-cCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 1111 11124444444433445566667788777666654
No 364
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=88.81 E-value=18 Score=35.01 Aligned_cols=240 Identities=9% Similarity=0.051 Sum_probs=127.1
Q ss_pred eCCCEEEEEeCCCeEEEEECCCCceee-----eccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE---E
Q 043172 316 PDGSQAIIAGRRKFFYSLDLVKAKADK-----IGPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKTKELI---G 387 (564)
Q Consensus 316 pdg~~l~s~~~dg~i~iwdl~~~~~~~-----~~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t~~~~---~ 387 (564)
++..++++.+.+|+|+-..+..-.... ...+.-.....+..+........+++.+..|.++-+....-... .
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~ 85 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRAS 85 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccC
Confidence 456678888999999987664322111 10111112223555555555667777788898887765321110 0
Q ss_pred ---------EeeecCcEEEEEEec---CCCEEEEEeCCCeEEEEECCCCce-----eEEEeecCCcceEEEEECCCCCEE
Q 043172 388 ---------TLKMNGTVRSLAFAD---DGKQLLSSGGDGQVYHWDLRTRTC-----IHRAVDEGCINGTALCTSPDGTFF 450 (564)
Q Consensus 388 ---------~~~~~~~V~~l~~sp---dg~~l~s~s~dg~V~lwD~~~~~~-----~~~~~~~~~~~i~~l~~sp~g~~l 450 (564)
.+.....|.++...+ ...+|+..+..|.++...+..-.. +..+.......+..+.....+..+
T Consensus 86 ~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~~~~i 165 (312)
T 1suu_A 86 KGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKDEKV 165 (312)
T ss_dssp --CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECTTCEE
T ss_pred CCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCCCCEE
Confidence 122234555554433 456788889999999988743211 111111222344444444455688
Q ss_pred EEEeCCCcEEEEeCCccc--CC--cceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCcee-------
Q 043172 451 AAGSDSGIVNVYNRQEFL--GG--KRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVF------- 519 (564)
Q Consensus 451 asgs~dg~V~iwd~~~~~--~~--~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~------- 519 (564)
+..+..|.+..+...... +. .......+.. ...|..+...+++..|++.+. .|.++...+......
T Consensus 166 ~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~--~G~~kr~~~~e~~~~~R~~kGv 242 (312)
T 1suu_A 166 ICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYLLIVSE--NGYGKRLNMSKISELKRGATGY 242 (312)
T ss_dssp EEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEEEEEET--TSEEEEEEGGGSCBCCTTCCCE
T ss_pred EEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeEEEEEC--CCceEEEEHHHhcccCCCCCCE
Confidence 899999999999876531 11 1112222222 345556655555666777777 788888888543221
Q ss_pred ccCCCCCCCCCCcEE-EEEeCCCCEEEEEcCCCeEEEEEcC
Q 043172 520 SNWPPANRNLQYPRC-LDFSPGGGFMAVGNAAGKVFLYKLN 559 (564)
Q Consensus 520 ~~~~~~~~~~~~V~~-l~fspdg~~Lasgs~dG~V~lw~l~ 559 (564)
..+.......+.+.+ ..+.++ ..+...+..|.+.-..+.
T Consensus 243 ~~~~~~k~~~~~lv~~~~~~~~-~~l~~~t~~g~~~r~~~~ 282 (312)
T 1suu_A 243 TSYKKSDKKAGSVVDAIAVSED-DEILLVSKRSKALRTVAG 282 (312)
T ss_dssp ECSCTTCTTTCSEEEEEEECTT-CEEEEEETTCEEEEEEGG
T ss_pred EeeEccCCCCCeEEEEEEeCCC-CEEEEEeCCCeEEEEEcc
Confidence 111111111233433 344444 445555667755444443
No 365
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=88.34 E-value=19 Score=34.73 Aligned_cols=241 Identities=8% Similarity=0.047 Sum_probs=125.0
Q ss_pred CCCCEEEEEeCCCcEEEEEecCCCC-------ceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEEC---CCCc--
Q 043172 272 RNAQLLLVAGLDRRLRFFQIDGKRN-------TKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDL---VKAK-- 339 (564)
Q Consensus 272 pdg~~l~s~s~dg~I~lwd~~~~~~-------~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl---~~~~-- 339 (564)
|+..++++.+.+|.|+--.+..-.. .....+. ....+..+........|+..+..|.++-+.. ....
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~k-e~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIK-EEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeC-CCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 4556788889999987665542110 0011122 2234445555556677777788887766553 2211
Q ss_pred --eeeecc-ccccCCcceEEE-EEc--CCCCEEEEEeCCCeEEEEECCCC-----cEEEE--eeecCcEEEEEEecCCCE
Q 043172 340 --ADKIGP-LVGREEKSLEFF-EVS--PDSSVIAFVGNEGYILLVSSKTK-----ELIGT--LKMNGTVRSLAFADDGKQ 406 (564)
Q Consensus 340 --~~~~~~-~~~~~~~~v~~~-~~s--pdg~~la~~~~dg~I~lwd~~t~-----~~~~~--~~~~~~V~~l~~spdg~~ 406 (564)
-.++.. +.-.....|..+ .+. .++.++++++..|.++...+... .-+.. +...+.+..+........
T Consensus 80 a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~~~~ 159 (307)
T 1zi0_A 80 ARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDE 159 (307)
T ss_dssp SCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECTTCE
T ss_pred CCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCCCCE
Confidence 111111 111112234444 332 35667888999999999877421 11222 223355656555555567
Q ss_pred EEEEeCCCeEEEEECCCCc-------eeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCC----cceee
Q 043172 407 LLSSGGDGQVYHWDLRTRT-------CIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGG----KRKPI 475 (564)
Q Consensus 407 l~s~s~dg~V~lwD~~~~~-------~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~----~~~~~ 475 (564)
|+..+..|.+..+....-. -+.-+.......+.++....++..+++.+..|.++-.++...... .....
T Consensus 160 i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~ 239 (307)
T 1zi0_A 160 VMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVIS 239 (307)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEES
T ss_pred EEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEEe
Confidence 8888889998888874311 111122222334556655455668889999999998887554211 11112
Q ss_pred EEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCC
Q 043172 476 KTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPS 515 (564)
Q Consensus 476 ~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s 515 (564)
..+......+..+....+...|+..+. +|.+.-+.+..
T Consensus 240 ~~~~~~~~~lv~~~~v~~~~~l~~~t~--~g~~ir~~~~~ 277 (307)
T 1zi0_A 240 IKVTERNGLVVGAVQVDDCDQIMMITD--AGTLVRTRVSE 277 (307)
T ss_dssp SCCCTTTCSEEEEEEECTTCEEEEEES--SCCEEEEEGGG
T ss_pred eEecCCCCeEEEEEEeCCCceEEEEcC--CCcEEEEeccc
Confidence 222222344444444333343444444 56666556543
No 366
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=88.32 E-value=32 Score=37.43 Aligned_cols=237 Identities=9% Similarity=-0.011 Sum_probs=118.5
Q ss_pred EeeCCCEEEEE-eCC----CeEEEEECCCCceeeeccccccCCc------ceEEEEEcCCCCEEEEE----------eCC
Q 043172 314 FLPDGSQAIIA-GRR----KFFYSLDLVKAKADKIGPLVGREEK------SLEFFEVSPDSSVIAFV----------GNE 372 (564)
Q Consensus 314 fspdg~~l~s~-~~d----g~i~iwdl~~~~~~~~~~~~~~~~~------~v~~~~~spdg~~la~~----------~~d 372 (564)
++|++++++.+ +.. ..++++|+.+++...- .+...... ....++|..+..++++. +..
T Consensus 137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~-~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~~~~ 215 (711)
T 4hvt_A 137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKN-GFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSSLYP 215 (711)
T ss_dssp CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTT-CSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTTSSB
T ss_pred cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCC-CcccccccccccccccceeeEECCCEEEEEeCCCCCCcCcCCCC
Confidence 77888887765 222 3799999999986421 11100000 11334676444343332 112
Q ss_pred CeEEEEECCCCc--EEEEee--ecCcEEEEEEecCCCE-----EEEEeC---CCeEEEEECCC--CceeEEEeecCCcce
Q 043172 373 GYILLVSSKTKE--LIGTLK--MNGTVRSLAFADDGKQ-----LLSSGG---DGQVYHWDLRT--RTCIHRAVDEGCING 438 (564)
Q Consensus 373 g~I~lwd~~t~~--~~~~~~--~~~~V~~l~~spdg~~-----l~s~s~---dg~V~lwD~~~--~~~~~~~~~~~~~~i 438 (564)
..|+.|.+-+.. -...+. ....-.+...++++++ +++.+. ...+++.+... +. +..+......
T Consensus 216 ~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~-- 292 (711)
T 4hvt_A 216 NSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQKINMPSDA-- 292 (711)
T ss_dssp CEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EEECCSCTTC--
T ss_pred CEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ceEeecCCcc--
Confidence 568888877653 222333 2222334455666652 444332 25677777653 32 2233222221
Q ss_pred EEEEECCCCCEEEEE----------eCCCcEEEEeCCcccC-----CcceeeEEccccccceeEEEEcCCCcEEEEEecC
Q 043172 439 TALCTSPDGTFFAAG----------SDSGIVNVYNRQEFLG-----GKRKPIKTIENLTTKVDFMKFNNDAQILAICSTM 503 (564)
Q Consensus 439 ~~l~~sp~g~~lasg----------s~dg~V~iwd~~~~~~-----~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~ 503 (564)
.+..+..+.+++.. ...+.|.++++..... ...+.+. .......+..+.|..+ .++++....
T Consensus 293 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~-~l~~~~~~~ 369 (711)
T 4hvt_A 293 -TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILF-TPTANEVFNFISTTKD-RVFLATYDN 369 (711)
T ss_dssp -EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEE-CCCTTEEEEEEEECSS-CEEEEEEET
T ss_pred -eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEE-CCCCCCeEEEEEEECC-EEEEEEEEC
Confidence 12233455444422 2467788999876411 1112211 1223457788888876 455555552
Q ss_pred CCCeEEEEEcCCCc-eecc-CCCCCCCCCCcEEEEEeCCCCEEE-EEc---CCCeEEEEEcC
Q 043172 504 KKNSLKLIHIPSYN-VFSN-WPPANRNLQYPRCLDFSPGGGFMA-VGN---AAGKVFLYKLN 559 (564)
Q Consensus 504 ~d~~I~lwdl~s~~-~~~~-~~~~~~~~~~V~~l~fspdg~~La-sgs---~dG~V~lw~l~ 559 (564)
....|.++++.++. .... ++... .+.+..+.+++++..++ +.+ .-+.+..+++.
T Consensus 370 ~~~~l~~~~~~~g~~~~~~~i~lp~--~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 370 VVAKVVTFTLENEQWTKPVVLKLPY--QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp TEEEEEEECEETTEECCCEEECCCS--TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred CEEEEEEEECCCCceEEEeccCCCC--CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 23357777776664 1221 11111 14566667777765443 332 23566666654
No 367
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=87.28 E-value=25 Score=34.98 Aligned_cols=193 Identities=13% Similarity=0.137 Sum_probs=96.7
Q ss_pred CCEEEEEeCCCeEEEEECCCC--------cEEE---Eee--ecCcEEEEEEecCCCEEEEEeCCCeEEEEECCCCc----
Q 043172 363 SSVIAFVGNEGYILLVSSKTK--------ELIG---TLK--MNGTVRSLAFADDGKQLLSSGGDGQVYHWDLRTRT---- 425 (564)
Q Consensus 363 g~~la~~~~dg~I~lwd~~t~--------~~~~---~~~--~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~---- 425 (564)
..+.++...+|.|+.|-.... .... .+. ....+..++++......+....+|.|+.|-....-
T Consensus 62 ~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~ 141 (389)
T 3kci_A 62 EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGH 141 (389)
T ss_dssp TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCS
T ss_pred CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCC
Confidence 445555567888888864321 1111 111 12345556676666677777889999999654311
Q ss_pred -------eeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCccc-------CCcceeeEEccccccceeEEEEc
Q 043172 426 -------CIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFL-------GGKRKPIKTIENLTTKVDFMKFN 491 (564)
Q Consensus 426 -------~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~-------~~~~~~~~~~~~~~~~I~~l~fs 491 (564)
....+.......|..|+.. ..+.++-..+|.|+.|-..... .....|..........|..++..
T Consensus 142 g~~~~~~~p~~v~~l~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G 219 (389)
T 3kci_A 142 GNRSPCDRPRVIESLRGIEVVDVAAG--GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACG 219 (389)
T ss_dssp SSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC
T ss_pred CCCccCcCCeEecccCCCeEEEEEeC--cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEc
Confidence 0111111122245555543 4466667789999999764421 00111211111122346666654
Q ss_pred CCCcEEEEEecCCCCeEEEEEcCCCceec-------cCCCCCC--CCCCcEEEEEeCCCCEEEEEcCCCeEEEEEcCCC
Q 043172 492 NDAQILAICSTMKKNSLKLIHIPSYNVFS-------NWPPANR--NLQYPRCLDFSPGGGFMAVGNAAGKVFLYKLNHY 561 (564)
Q Consensus 492 pdg~~La~~s~~~d~~I~lwdl~s~~~~~-------~~~~~~~--~~~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~~ 561 (564)
....+.++-.. ++.|+.|-......+. ..|.... ....|..++... .+.++-..+|.|+.|-.+.+
T Consensus 220 ~g~~~t~~l~~--~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~--~hs~alt~~G~v~~wG~n~~ 294 (389)
T 3kci_A 220 SGDAQTLCLTD--DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGS--QFSVALTKSGAVYTWGKGDY 294 (389)
T ss_dssp CSSCEEEEEET--TTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEET--TEEEEEETTSCEEEEECCGG
T ss_pred CCCcEEEEEcc--CCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCC--CEEEEEeCCCeEEEEeCCCC
Confidence 42234444444 7888888654321110 0011000 112355554433 44444567889999976543
No 368
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=86.27 E-value=26 Score=34.08 Aligned_cols=194 Identities=8% Similarity=0.048 Sum_probs=109.7
Q ss_pred CCCCEEEEEeCCCcEEEEEecCCC--CceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECC---CCc----eee
Q 043172 272 RNAQLLLVAGLDRRLRFFQIDGKR--NTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLV---KAK----ADK 342 (564)
Q Consensus 272 pdg~~l~s~s~dg~I~lwd~~~~~--~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~---~~~----~~~ 342 (564)
|+..++++.+.+|.|+--.+..-. ......+. ....+..+........|+..+..|.++-+... ... -.+
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~ 81 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMK-DTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH 81 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCC-TTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccC-CCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC
Confidence 567788999999999877654110 00011122 23345555555566778888888887766542 111 111
Q ss_pred eccc-cccCCcceEE-EEEcC--CCCEEEEEeCCCeEEEEECCCC------cEEEEe--eecCcEEEEEEecCCCEEEEE
Q 043172 343 IGPL-VGREEKSLEF-FEVSP--DSSVIAFVGNEGYILLVSSKTK------ELIGTL--KMNGTVRSLAFADDGKQLLSS 410 (564)
Q Consensus 343 ~~~~-~~~~~~~v~~-~~~sp--dg~~la~~~~dg~I~lwd~~t~------~~~~~~--~~~~~V~~l~~spdg~~l~s~ 410 (564)
+..+ .-.....|.. +.+.+ ++.++++++..|.++...+... .-+..+ ...+.+..+........|+..
T Consensus 82 i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l~ 161 (323)
T 1wp5_A 82 IANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFLV 161 (323)
T ss_dssp GGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEEE
T ss_pred hhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEEEEE
Confidence 1111 1111223444 44443 2668889999999999987421 222222 234566666555556678888
Q ss_pred eCCCeEEEEECCCCc-------eeEEEeecCCcceEEEEECCCCC-EEEEEeCCCcEEEEeCCc
Q 043172 411 GGDGQVYHWDLRTRT-------CIHRAVDEGCINGTALCTSPDGT-FFAAGSDSGIVNVYNRQE 466 (564)
Q Consensus 411 s~dg~V~lwD~~~~~-------~~~~~~~~~~~~i~~l~~sp~g~-~lasgs~dg~V~iwd~~~ 466 (564)
+.+|.+..+....-. -+.-+.......+.++..-+.+. .|++.+..|..+..++..
T Consensus 162 T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 162 THNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp ETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred eCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 899999888874311 11212222223345554434444 788889999988887765
No 369
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=85.98 E-value=27 Score=34.02 Aligned_cols=238 Identities=12% Similarity=0.088 Sum_probs=127.6
Q ss_pred CEEEEEeCCCcEEEEEecCCCC-----ceeEEEE-eCCcCeEEEEEeeCCCEEEEEeCCCeEEEEE---CCCC----cee
Q 043172 275 QLLLVAGLDRRLRFFQIDGKRN-----TKIQSIF-LEDCPVRKASFLPDGSQAIIAGRRKFFYSLD---LVKA----KAD 341 (564)
Q Consensus 275 ~~l~s~s~dg~I~lwd~~~~~~-----~~~~~~~-~~~~~I~~l~fspdg~~l~s~~~dg~i~iwd---l~~~----~~~ 341 (564)
+++++.+..|.|+--.+..-.. .-+..+. .....+..+........|+.-+..|.++... +... .-.
T Consensus 4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~ 83 (327)
T 3uc1_A 4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQ 83 (327)
T ss_dssp EEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCE
T ss_pred cEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCE
Confidence 4677888888888655431000 0011111 1223455555555666777777777666544 3322 111
Q ss_pred ee---ccccccCCcceEEEEEcC--CCCEEEEEeCCCeEEEEECCCCcE-----EE--EeeecCcEEEEEEecCCCEEEE
Q 043172 342 KI---GPLVGREEKSLEFFEVSP--DSSVIAFVGNEGYILLVSSKTKEL-----IG--TLKMNGTVRSLAFADDGKQLLS 409 (564)
Q Consensus 342 ~~---~~~~~~~~~~v~~~~~sp--dg~~la~~~~dg~I~lwd~~t~~~-----~~--~~~~~~~V~~l~~spdg~~l~s 409 (564)
++ ..+.. ....+..+.+.. +..++++++..|.|+...+..... +. .++....+..+........|+.
T Consensus 84 ~i~~~l~l~~-~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill 162 (327)
T 3uc1_A 84 HVANLLAFQP-EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLL 162 (327)
T ss_dssp EHHHHTTCCT-TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEE
T ss_pred EHHHccCCCC-CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEE
Confidence 11 11221 222344445543 578999999999999998754221 22 2223455666655555667888
Q ss_pred EeCCCeEEEEECC--CCce-------eEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCc--ceeeEEc
Q 043172 410 SGGDGQVYHWDLR--TRTC-------IHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGK--RKPIKTI 478 (564)
Q Consensus 410 ~s~dg~V~lwD~~--~~~~-------~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~--~~~~~~~ 478 (564)
.+..|.+..+.+. .-.. +.-+.......+.++...+.+.+|+..+..|.++.-.+....... .+-+..+
T Consensus 163 ~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~ 242 (327)
T 3uc1_A 163 VSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTV 242 (327)
T ss_dssp EETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESS
T ss_pred EECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEE
Confidence 8899999888876 2111 111111223346666666666789999999999988876542110 1222222
Q ss_pred c--ccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCC
Q 043172 479 E--NLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPS 515 (564)
Q Consensus 479 ~--~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s 515 (564)
. .....+..+....+...++..+. +|.+.-+.+..
T Consensus 243 ~l~~~~d~lv~~~~~~~~~~i~l~T~--~G~~ir~~~~~ 279 (327)
T 3uc1_A 243 MYDRRRGRLVGALIVDDDSELYAVTS--GGGVIRTAARQ 279 (327)
T ss_dssp CCCTTTCSEEEEEEECTTCEEEEEEG--GGCEEEEEGGG
T ss_pred EecCCCCeEEEEEEeCCCccEEEEcC--CCeEEEEehhh
Confidence 2 11233444444444445555555 56666666643
No 370
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=81.99 E-value=73 Score=35.95 Aligned_cols=38 Identities=24% Similarity=0.264 Sum_probs=33.4
Q ss_pred cEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEe
Q 043172 394 TVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAV 431 (564)
Q Consensus 394 ~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~ 431 (564)
.+.+++..++..++++.+.|+++++|++.+++++....
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 56778888888999999999999999999999987654
No 371
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=76.53 E-value=63 Score=32.07 Aligned_cols=169 Identities=11% Similarity=0.146 Sum_probs=94.8
Q ss_pred cEEEEEecCCCCceeEEEEeC------CcCeEEEEEe---eC----CCEEEEEe-CCCeEEEEECCCCceeeeccc---c
Q 043172 285 RLRFFQIDGKRNTKIQSIFLE------DCPVRKASFL---PD----GSQAIIAG-RRKFFYSLDLVKAKADKIGPL---V 347 (564)
Q Consensus 285 ~I~lwd~~~~~~~~~~~~~~~------~~~I~~l~fs---pd----g~~l~s~~-~dg~i~iwdl~~~~~~~~~~~---~ 347 (564)
.|.+||+.+...+.++.+... ...+..+++. |. +.+++.+. ..+.|.|+|+.+++.-++..- .
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 355666653311566665542 3456778877 22 34555554 467899999999876554310 0
Q ss_pred ---------ccC---CcceEEEEEcCC----CCEEEEEeCCC-eEEEEE---CCCC---cEEEEeeec---CcEEEEEEe
Q 043172 348 ---------GRE---EKSLEFFEVSPD----SSVIAFVGNEG-YILLVS---SKTK---ELIGTLKMN---GTVRSLAFA 401 (564)
Q Consensus 348 ---------~~~---~~~v~~~~~spd----g~~la~~~~dg-~I~lwd---~~t~---~~~~~~~~~---~~V~~l~~s 401 (564)
|.. ...+..++++|+ ++.|+...-.+ .++-.. ++.. ..+..+... +.-..+++.
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D 283 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYD 283 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEEC
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEe
Confidence 000 125788999998 77887776544 344333 1222 122222222 334456675
Q ss_pred -cCCCEEEEEeCCCeEEEEECCC-----CceeEEEeecCCcceEEEEECCCCCEEEEE
Q 043172 402 -DDGKQLLSSGGDGQVYHWDLRT-----RTCIHRAVDEGCINGTALCTSPDGTFFAAG 453 (564)
Q Consensus 402 -pdg~~l~s~s~dg~V~lwD~~~-----~~~~~~~~~~~~~~i~~l~~sp~g~~lasg 453 (564)
.+|.++++--....|..|+..+ ...........-.....+.+.++|.+.++.
T Consensus 284 ~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 284 PKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp TTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred CCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence 5677777777788999999875 122222233333456677777666544443
No 372
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=74.36 E-value=1.1e+02 Score=33.69 Aligned_cols=155 Identities=12% Similarity=0.052 Sum_probs=74.1
Q ss_pred CCCeeEEEEcCC-CCEEEEEeCCCcEEEEEecCCCCceeEEEEe----CCcCeEEEEEeeC-CCEEEEEeCCCe----EE
Q 043172 262 TGPINSVQFHRN-AQLLLVAGLDRRLRFFQIDGKRNTKIQSIFL----EDCPVRKASFLPD-GSQAIIAGRRKF----FY 331 (564)
Q Consensus 262 ~~~V~~l~fspd-g~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~----~~~~I~~l~fspd-g~~l~s~~~dg~----i~ 331 (564)
.+.|.+|+++|. ...+++++..+.|...+=.+.+...+..... ....|.++++.|. .+.++++..... -.
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~~ 93 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAA 93 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCCE
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecCCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcccE
Confidence 468999999995 4566667666766555422222222111000 1246899999984 345555442211 22
Q ss_pred EE-ECCCCce-eeecc-cc--cc-CC-cceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCc-EEEEee------ecCcEE
Q 043172 332 SL-DLVKAKA-DKIGP-LV--GR-EE-KSLEFFEVSPD-SSVIAFVGNEGYILLVSSKTKE-LIGTLK------MNGTVR 396 (564)
Q Consensus 332 iw-dl~~~~~-~~~~~-~~--~~-~~-~~v~~~~~spd-g~~la~~~~dg~I~lwd~~t~~-~~~~~~------~~~~V~ 396 (564)
|| ....|+. ..+.. +. +. .. ..+..++++|. ...++++...+.|.. ....++ +..... ....+.
T Consensus 94 v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~-S~DgG~TW~~~~~~~~~~~~~~~~~ 172 (789)
T 1sqj_A 94 FYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKTWTNVTSIPDAFTNGIGYT 172 (789)
T ss_dssp EEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEE-ESSTTSSCEEETTSCCCCSTTTCEE
T ss_pred EEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEE-ECCCCcccCCCccCccccCCCCCeE
Confidence 33 2233322 11110 00 00 00 12456888875 345555553443322 222222 221111 124578
Q ss_pred EEEEecC-CCEEEEEeCC-CeEE
Q 043172 397 SLAFADD-GKQLLSSGGD-GQVY 417 (564)
Q Consensus 397 ~l~~spd-g~~l~s~s~d-g~V~ 417 (564)
.+.++|. +..++++..+ +.|+
T Consensus 173 ~i~~~p~~~~~~~~~~~~~~~v~ 195 (789)
T 1sqj_A 173 SVIFDPERNGTIYASATAPQGMY 195 (789)
T ss_dssp EEEECTTSTTCEEEEESSTTCEE
T ss_pred EEEECCCCCCEEEEEEcCCCeEE
Confidence 8999884 4566666654 4443
No 373
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=69.03 E-value=77 Score=29.78 Aligned_cols=200 Identities=13% Similarity=0.043 Sum_probs=113.3
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEEC---CCCcEEEEeeecCcEEEEEEec--CCCEEEEEeCCCeEEEEECCCCc--
Q 043172 353 SLEFFEVSPDSSVIAFVGNEGYILLVSS---KTKELIGTLKMNGTVRSLAFAD--DGKQLLSSGGDGQVYHWDLRTRT-- 425 (564)
Q Consensus 353 ~v~~~~~spdg~~la~~~~dg~I~lwd~---~t~~~~~~~~~~~~V~~l~~sp--dg~~l~s~s~dg~V~lwD~~~~~-- 425 (564)
.+..+.......+|++.++.|.++...+ ........+.....|..+.. + +..+++.++.+|.|+...+..-.
T Consensus 25 ~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~~ 103 (276)
T 3no0_A 25 PVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKSREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEYK 103 (276)
T ss_dssp CEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSSTTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTTC
T ss_pred eEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCCCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhhh
Confidence 4555544445556666677788776543 21111111434456666644 4 46789999999999999875432
Q ss_pred --eeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccC----CcceeeEEccccccceeEEEEcCCCcEEEE
Q 043172 426 --CIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLG----GKRKPIKTIENLTTKVDFMKFNNDAQILAI 499 (564)
Q Consensus 426 --~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~----~~~~~~~~~~~~~~~I~~l~fspdg~~La~ 499 (564)
-+..+.......+..+........++..+..|.+..+....... ....+...+.. ...|..+...+++..|++
T Consensus 104 ~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~-~d~vv~~~~~~~~~~ll~ 182 (276)
T 3no0_A 104 AQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEK-NDETSGLRIWNGEPYLLV 182 (276)
T ss_dssp STTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT-TCCEEEEEEESSCSEEEE
T ss_pred cCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCC-CCEEEEEEEeCCCCEEEE
Confidence 11111111222445555555666889999999988887654310 11122222322 345666555566677888
Q ss_pred EecCCCCeEEEEEcCCCce-------eccCCCCCCCCCCcEEEEEeCCCCEEEEEcCCCeEEE--EEcCC
Q 043172 500 CSTMKKNSLKLIHIPSYNV-------FSNWPPANRNLQYPRCLDFSPGGGFMAVGNAAGKVFL--YKLNH 560 (564)
Q Consensus 500 ~s~~~d~~I~lwdl~s~~~-------~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~dG~V~l--w~l~~ 560 (564)
.+. .|.++...+..... ...+ ...+.+..+....+...++..+..|.+.. +++..
T Consensus 183 ~T~--~G~~kr~~~~e~~~~~R~gkGv~~i----~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 183 ITA--KGRVKKISHEEIPKTNRGVKGTEVS----GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp EET--TSCEEEEEGGGSCCCCTTCCCEECC----CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred EeC--CCcEEEeEHHHcccCCCCCcceEEE----cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHH
Confidence 887 88888888754322 1112 11234444444344456777778888887 77654
No 374
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=68.20 E-value=80 Score=29.65 Aligned_cols=239 Identities=8% Similarity=-0.023 Sum_probs=114.0
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECCCCceeee
Q 043172 264 PINSVQFHRNAQLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLVKAKADKI 343 (564)
Q Consensus 264 ~V~~l~fspdg~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~~~~~~~~ 343 (564)
.|..|+......+++ . ||.|..|-..... ..-. -......|..++... .+.++.. ++.|+.|-.......-+
T Consensus 25 ~i~~ia~G~~h~~~l--~-~G~v~~wG~n~~G-qlg~-p~~~~~~i~~ia~G~--~hs~~l~-~G~v~~wG~n~~Gqlg~ 96 (282)
T 3qhy_B 25 GVDAIAGGYFHGLAL--K-GGKVLGWGANLNG-QLTM-PAATQSGVDAIAAGN--YHSLALK-DGEVIAWGGNEDGQTTV 96 (282)
T ss_dssp SCCEEEECSSEEEEE--E-TTEEEEEECCSSS-TTSC-CGGGGSCCCEEEECS--SEEEEEE-TTEEEEEECCTTSTTCC
T ss_pred CCcEEEeCCCeEEEE--E-CCEEEEEeCCCCC-CCCC-CccCCCCEEEEEeCC--CEEEEEE-CCEEEEeeCCCCCCCCC
Confidence 455555544322232 3 7888887643211 0000 001122455555442 2333334 89999997654221111
Q ss_pred ccccccCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCC-CcEEEEeeecCcEEEEEEecCCCEEEEEeCCCeEEEEECC
Q 043172 344 GPLVGREEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKT-KELIGTLKMNGTVRSLAFADDGKQLLSSGGDGQVYHWDLR 422 (564)
Q Consensus 344 ~~~~~~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t-~~~~~~~~~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~~ 422 (564)
+......|..++.... +.+... +|.|+.|-... +++-........|..++.... ..+... +|.|+.|-..
T Consensus 97 ---P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG~n 167 (282)
T 3qhy_B 97 ---PAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVY--TALAVK-NGGVIAWGDN 167 (282)
T ss_dssp ---CGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS--EEEEEE-TTEEEEEECC
T ss_pred ---CcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccC--EEEEEE-CCEEEEecCC
Confidence 1111124666665543 333334 89999997643 222111113456777766433 233334 7999999876
Q ss_pred CCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEEEEec
Q 043172 423 TRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILAICST 502 (564)
Q Consensus 423 ~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~ 502 (564)
....+. ........+..|+..... .++. .+|.|+.|-..... ....|.. ....|..|+...... ++..
T Consensus 168 ~~gqlg-~p~~~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~~g-qlg~p~~----~~~~v~~i~~G~~h~-~al~-- 235 (282)
T 3qhy_B 168 YFGQTT-VPAEAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRYK-QTTVPTE----ALSGVSAIASGEWYS-LALK-- 235 (282)
T ss_dssp TTSTTS-CCGGGGSSEEEEEECSSE-EEEE--ETTEEEEEECCTTS-TTCCCGG----GGSSCCEEEECSSCE-EEEE--
T ss_pred CCCCCC-CceecCCCeEEEEecCCE-EEEE--ECCeEEEEECCCCC-CCCCCcc----cCCCceEEEcCCCEE-EEEE--
Confidence 532221 111112346666654432 3333 58999999765431 1111111 123466666544332 2222
Q ss_pred CCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCC
Q 043172 503 MKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPG 540 (564)
Q Consensus 503 ~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspd 540 (564)
++.|..|=......... ...|.+++-.+.
T Consensus 236 --~g~v~~wG~n~~gq~~v-------~~~v~~iaaG~~ 264 (282)
T 3qhy_B 236 --NGKVIAWGSSRTAPSSV-------QSGVSSIEAGPN 264 (282)
T ss_dssp --TTEEEEESTTCCCCGGG-------SSCEEEEEECSS
T ss_pred --CCEEEEecCCCCccccC-------CCCcEEEEECcC
Confidence 46777776554333221 134666666554
No 375
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=59.75 E-value=2e+02 Score=31.42 Aligned_cols=149 Identities=10% Similarity=0.053 Sum_probs=74.3
Q ss_pred CcCeEEEEEeeC-CCEEEEEeCCCeEEEEECCCCceeeecccccc---CCcceEEEEEcCC-CCEEEEEeCC------Ce
Q 043172 306 DCPVRKASFLPD-GSQAIIAGRRKFFYSLDLVKAKADKIGPLVGR---EEKSLEFFEVSPD-SSVIAFVGNE------GY 374 (564)
Q Consensus 306 ~~~I~~l~fspd-g~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~---~~~~v~~~~~spd-g~~la~~~~d------g~ 374 (564)
...|.+++++|. ...+++++..+.|+..+=......++...... ....+..+++.|. ...++++... +.
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~~ 93 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAA 93 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCCE
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecCCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcccE
Confidence 468999999985 45667777667666655333334333221110 1235899999984 3444444322 22
Q ss_pred EEEEECCCCcEEEEeee--------cC--cEEEEEEecC-CCEEEEEeCCCeEEEEECCCCceeEEEee-----cCCcce
Q 043172 375 ILLVSSKTKELIGTLKM--------NG--TVRSLAFADD-GKQLLSSGGDGQVYHWDLRTRTCIHRAVD-----EGCING 438 (564)
Q Consensus 375 I~lwd~~t~~~~~~~~~--------~~--~V~~l~~spd-g~~l~s~s~dg~V~lwD~~~~~~~~~~~~-----~~~~~i 438 (564)
| +.....++.-..+.. .+ .+..++++|. ...++++...+.|+. ....++.-..+.. .....+
T Consensus 94 v-~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~-S~DgG~TW~~~~~~~~~~~~~~~~ 171 (789)
T 1sqj_A 94 F-YVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKTWTNVTSIPDAFTNGIGY 171 (789)
T ss_dssp E-EEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEE-ESSTTSSCEEETTSCCCCSTTTCE
T ss_pred E-EEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEE-ECCCCcccCCCccCccccCCCCCe
Confidence 2 233333433222221 11 3567888874 345666654444332 2222322222211 111356
Q ss_pred EEEEECCC-CCEEEEEeCC
Q 043172 439 TALCTSPD-GTFFAAGSDS 456 (564)
Q Consensus 439 ~~l~~sp~-g~~lasgs~d 456 (564)
..+.++|. +..++++..+
T Consensus 172 ~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 172 TSVIFDPERNGTIYASATA 190 (789)
T ss_dssp EEEEECTTSTTCEEEEESS
T ss_pred EEEEECCCCCCEEEEEEcC
Confidence 78888885 3455555543
No 376
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=59.60 E-value=38 Score=35.68 Aligned_cols=61 Identities=21% Similarity=0.211 Sum_probs=42.8
Q ss_pred cEEEEEEecCCCEEEEEeC------------CCeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEEe
Q 043172 394 TVRSLAFADDGKQLLSSGG------------DGQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAGS 454 (564)
Q Consensus 394 ~V~~l~~spdg~~l~s~s~------------dg~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs 454 (564)
....|+|.++|.+.++... ...|+.++..+++....+.......++.++|+|+++.|++.-
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 4678999999987664321 126788888777765544433344689999999999887653
No 377
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=58.46 E-value=64 Score=37.25 Aligned_cols=38 Identities=24% Similarity=0.264 Sum_probs=31.9
Q ss_pred cEEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEe
Q 043172 394 TVRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAV 431 (564)
Q Consensus 394 ~V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~ 431 (564)
.+.+++..++..++++.+.|+++++|++.+++|+....
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 34556667788899999999999999999999988754
No 378
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=58.34 E-value=32 Score=36.51 Aligned_cols=59 Identities=24% Similarity=0.233 Sum_probs=42.6
Q ss_pred EEEEEEecCCCEEEEEeCC------------CeEEEEECCCCceeEEEeecCCcceEEEEECCCCCEEEEE
Q 043172 395 VRSLAFADDGKQLLSSGGD------------GQVYHWDLRTRTCIHRAVDEGCINGTALCTSPDGTFFAAG 453 (564)
Q Consensus 395 V~~l~~spdg~~l~s~s~d------------g~V~lwD~~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasg 453 (564)
.-.|+|+|.|+++++-..+ ..+.+.+..+++....+.......++.++|+|+++.|++.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 4678999999866654321 2466667777776665555556689999999999987765
No 379
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=54.16 E-value=36 Score=36.07 Aligned_cols=58 Identities=16% Similarity=0.223 Sum_probs=43.2
Q ss_pred ceEEEEEcCCCCEEEEEeCC------------CeEEEEECCCCcEEEEee--ecCcEEEEEEecCCCEEEEE
Q 043172 353 SLEFFEVSPDSSVIAFVGNE------------GYILLVSSKTKELIGTLK--MNGTVRSLAFADDGKQLLSS 410 (564)
Q Consensus 353 ~v~~~~~spdg~~la~~~~d------------g~I~lwd~~t~~~~~~~~--~~~~V~~l~~spdg~~l~s~ 410 (564)
..-.|+|+|.|++++.-..+ ..+.+.+..+++....+. ....++.++|+||++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 35679999999966654322 346677777888776666 45689999999999888765
No 380
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=51.70 E-value=3e+02 Score=30.90 Aligned_cols=33 Identities=9% Similarity=-0.023 Sum_probs=28.3
Q ss_pred CCcEEEEEeCCCCEEEEEcCCCeEEEEEcCCCC
Q 043172 530 QYPRCLDFSPGGGFMAVGNAAGKVFLYKLNHYH 562 (564)
Q Consensus 530 ~~V~~l~fspdg~~Lasgs~dG~V~lw~l~~~~ 562 (564)
..+.+++..++..++++-+.|+++++|++.+++
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~ 268 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQ 268 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCC
Confidence 356788888898999999999999999998753
No 381
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=51.30 E-value=59 Score=34.25 Aligned_cols=60 Identities=15% Similarity=0.152 Sum_probs=44.5
Q ss_pred cceEEEEEcCCCCEEEEEeC------------CCeEEEEECCCCcEEEEeee--cCcEEEEEEecCCCEEEEEe
Q 043172 352 KSLEFFEVSPDSSVIAFVGN------------EGYILLVSSKTKELIGTLKM--NGTVRSLAFADDGKQLLSSG 411 (564)
Q Consensus 352 ~~v~~~~~spdg~~la~~~~------------dg~I~lwd~~t~~~~~~~~~--~~~V~~l~~spdg~~l~s~s 411 (564)
.....+.|.++|.+.+.... ...|..++..+++....+.. ...++.++|+||++.|+++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 35678999999987774321 12678888888887666652 35789999999999888764
No 382
>3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa}
Probab=51.27 E-value=2.3e+02 Score=29.59 Aligned_cols=154 Identities=10% Similarity=0.044 Sum_probs=81.9
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeEEEee------------------------cCCcceEEEEECCCCCEEEEEeC---C
Q 043172 404 GKQLLSSGGDGQVYHWDLRTRTCIHRAVD------------------------EGCINGTALCTSPDGTFFAAGSD---S 456 (564)
Q Consensus 404 g~~l~s~s~dg~V~lwD~~~~~~~~~~~~------------------------~~~~~i~~l~~sp~g~~lasgs~---d 456 (564)
...+++|+.||.++.++.. +..+..|.. .+...+..+.+...-+.+++|+. .
T Consensus 85 ~~~VyvGaNDGmLHaF~a~-G~E~wAfiP~~~l~~L~~l~~~~y~~~~h~Y~VDG~p~~~Dv~~~g~wrtvLvggmg~GG 163 (570)
T 3hx6_A 85 APRVYVGANDGMLHGFDTD-GNETFAFIPSAVFEKMHKLTARGYQGGAHQFYVDGSPVVADAFFGGAWHTVLIGSLRAGG 163 (570)
T ss_dssp CCEEEEECSSSCEEECCSS-CCCCEEECCHHHHHHCC-------CCHHHHHHHHCCCEEEEEEETTEEEEEEEEECTTSC
T ss_pred ccEEEEECCCceEEEECCC-CcEEEEECCHHHHHHHHHHhccCccccCcceecCCCCEEEEEEeCCcceEEEEEecCCCC
Confidence 3578888889999998876 544333321 11111222323211133444432 2
Q ss_pred CcEEEEeCCcccCCcceeeEEccc-------cccceeEEEEcCCCcEEEEEecC-----CCCeEEEEEcCCCceeccCCC
Q 043172 457 GIVNVYNRQEFLGGKRKPIKTIEN-------LTTKVDFMKFNNDAQILAICSTM-----KKNSLKLIHIPSYNVFSNWPP 524 (564)
Q Consensus 457 g~V~iwd~~~~~~~~~~~~~~~~~-------~~~~I~~l~fspdg~~La~~s~~-----~d~~I~lwdl~s~~~~~~~~~ 524 (564)
..++..|+... ..++.+..+.. +...-..|.--++++++++-+.. ....|.|+|+.++..+..+..
T Consensus 164 ~~~yALDVT~P--~~p~~LWe~~~~~~~~LG~t~s~P~I~~~~~g~w~~vfG~GY~~~~~~~~Lyv~d~~tG~li~~i~~ 241 (570)
T 3hx6_A 164 KGLFALDVTDP--ANIKLLWEIGVDQEPDLGYSFPKPTVARLHNGKWAVVTGNGYSSMNDKAALLIIDMETGAITRKLEV 241 (570)
T ss_dssp SEEEEEECSSG--GGCEEEEEEETTTCTTCCBCCSCCEEEECTTSSEEEEEECCBSCTTCCEEEEEEETTTCCEEEEEEE
T ss_pred cEEEEEECCCC--CCCceeEEECCCCccccCccccCCEEEEecCCCEEEEEccccCCCCCccEEEEEECCCCceEEEEec
Confidence 24666666653 33455555541 11122234444467765543332 135799999999998876643
Q ss_pred CCC--CCCCcEEEE-EeCCC----CEEEEEcCCCeEEEEEcCC
Q 043172 525 ANR--NLQYPRCLD-FSPGG----GFMAVGNAAGKVFLYKLNH 560 (564)
Q Consensus 525 ~~~--~~~~V~~l~-fspdg----~~Lasgs~dG~V~lw~l~~ 560 (564)
... ....+..+. +..++ .++++|...|.|.-+||..
T Consensus 242 ~~~~~~~~Gls~~~~~D~d~Dg~~D~~YaGDl~GnlWRfDl~~ 284 (570)
T 3hx6_A 242 TGRTGVPNGLSSPRLADNNSDGVADYAYAGDLQGNLWRFDLIA 284 (570)
T ss_dssp CCSTTSCCCEEEEEEECTTSSSBCCEEEEEETTSEEEEEECSC
T ss_pred CCCCccCCccccceEEecCCCCceeEEEEEeCCCcEEEEEcCC
Confidence 311 111223333 22333 3788999999998888764
No 383
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=44.53 E-value=1.9e+02 Score=26.62 Aligned_cols=148 Identities=11% Similarity=0.033 Sum_probs=78.0
Q ss_pred EEEEEeCCCeEEEEECCCCce-eEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCccc--CCcceeeEEccc--
Q 043172 406 QLLSSGGDGQVYHWDLRTRTC-IHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVYNRQEFL--GGKRKPIKTIEN-- 480 (564)
Q Consensus 406 ~l~s~s~dg~V~lwD~~~~~~-~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~--~~~~~~~~~~~~-- 480 (564)
.+++.+.+|.|+--....... ...+. .+ ..+..+........|+..+..|.++-+...... .....++..+..
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~~~~~lk-e~-D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~ 81 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDAPGLNYK-AG-DSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLP 81 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCSTTSCCC-TT-CCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCC
T ss_pred EEEEEeCCCEEEEeeCCcCCceeccCC-CC-CEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCC
Confidence 455667778777655443111 00111 11 123333333344567777888887665554321 111222221111
Q ss_pred cccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCc-------eeccCCCCCCCCCCcEEEEEe-CCCCEEEEEcCCCe
Q 043172 481 LTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYN-------VFSNWPPANRNLQYPRCLDFS-PGGGFMAVGNAAGK 552 (564)
Q Consensus 481 ~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~-------~~~~~~~~~~~~~~V~~l~fs-pdg~~Lasgs~dG~ 552 (564)
....|.++....++++|++++. .|.++...+.... ...++. . ...+-.+... .....|+..+..|.
T Consensus 82 ~~e~Iv~~~~~~~~~~lll~T~--~G~~Kr~~~~e~~~~~r~G~~~i~L~---~-~d~lv~~~~~~~~~~~i~l~T~~G~ 155 (256)
T 1zvt_A 82 PGATVDHMLMESDDQKLLMASD--AGYGFVCTFNDLVARNRAGKALITLP---E-NAHVMPPVVIEDASDMLLAITQAGR 155 (256)
T ss_dssp TTCCEEEEECCCTTCEEEEEBT--TSEEEEEEGGGGCCCSTTCEECBCCC---T-TCCBCCCEECCCTTCEEEEEETTSE
T ss_pred CCCEEEEEEEeCCCCEEEEEeC--CCeEEEeEHHHhcccCcCceEEEEEC---C-CCEEEEEEEecCCCCEEEEEcCCCe
Confidence 1345666644345677888887 8999998875432 112221 1 1334444444 34567888889999
Q ss_pred EEEEEcCCC
Q 043172 553 VFLYKLNHY 561 (564)
Q Consensus 553 V~lw~l~~~ 561 (564)
+..+.+...
T Consensus 156 ~lrf~~~ei 164 (256)
T 1zvt_A 156 MLMFPVSDL 164 (256)
T ss_dssp EEEEEGGGS
T ss_pred EEEEEHHHC
Confidence 988887643
No 384
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=43.26 E-value=2e+02 Score=26.49 Aligned_cols=147 Identities=12% Similarity=0.145 Sum_probs=78.4
Q ss_pred CEEEEEeCCCcEEEEEecCCCCceeEEEEeCCcCeEEEEEeeCCCEEEEEeCCCeEEEEECC---CCce--eeec-cccc
Q 043172 275 QLLLVAGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQAIIAGRRKFFYSLDLV---KAKA--DKIG-PLVG 348 (564)
Q Consensus 275 ~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~~~I~~l~fspdg~~l~s~~~dg~i~iwdl~---~~~~--~~~~-~~~~ 348 (564)
+.+++.+.+|.|+--.........+ .+. ....+..+........|+..+..|.++-+... .++. ..+. .+.-
T Consensus 3 ~v~v~lT~~G~iKr~~~~~~~~~~~-~lk-e~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L 80 (256)
T 1zvt_A 3 PVTIVLSQMGWVRSAKGHDIDAPGL-NYK-AGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTL 80 (256)
T ss_dssp EEEEEEETTSEEEEEESSCCCSTTS-CCC-TTCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCC
T ss_pred CEEEEEeCCCEEEEeeCCcCCceec-cCC-CCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecC
Confidence 3456667777776544322110011 122 22344444444455567777778876665432 2111 1111 1111
Q ss_pred cCCcceEEEEEcCCCCEEEEEeCCCeEEEEECCC-------CcEEEEeeecCcEEEEEEe-cCCCEEEEEeCCCeEEEEE
Q 043172 349 REEKSLEFFEVSPDSSVIAFVGNEGYILLVSSKT-------KELIGTLKMNGTVRSLAFA-DDGKQLLSSGGDGQVYHWD 420 (564)
Q Consensus 349 ~~~~~v~~~~~spdg~~la~~~~dg~I~lwd~~t-------~~~~~~~~~~~~V~~l~~s-pdg~~l~s~s~dg~V~lwD 420 (564)
.....|..+....++.+|++++..|.++...+.. +.....++....+..+... ..+..|+..+.+|.+..+.
T Consensus 81 ~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~ 160 (256)
T 1zvt_A 81 PPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFP 160 (256)
T ss_dssp CTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEE
T ss_pred CCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECCCCEEEEEEEecCCCCEEEEEcCCCeEEEEE
Confidence 1122455554334567788899999999998742 2222223333455555554 3456788888999998888
Q ss_pred CCC
Q 043172 421 LRT 423 (564)
Q Consensus 421 ~~~ 423 (564)
+..
T Consensus 161 ~~e 163 (256)
T 1zvt_A 161 VSD 163 (256)
T ss_dssp GGG
T ss_pred HHH
Confidence 754
No 385
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=41.08 E-value=2.7e+02 Score=27.41 Aligned_cols=192 Identities=10% Similarity=0.092 Sum_probs=0.0
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCC-------------CcEEEEeeecCcEEEEEEecCCCEEEEEeCCCeEEEEEC--
Q 043172 357 FEVSPDSSVIAFVGNEGYILLVSSKT-------------KELIGTLKMNGTVRSLAFADDGKQLLSSGGDGQVYHWDL-- 421 (564)
Q Consensus 357 ~~~spdg~~la~~~~dg~I~lwd~~t-------------~~~~~~~~~~~~V~~l~~spdg~~l~s~s~dg~V~lwD~-- 421 (564)
+.++..+.+.++...+|.|+.|-... ......+.....|..++.. ..+.++...+|.|+.|-.
T Consensus 78 ~~va~G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~G--~~hs~al~~~G~v~~wG~~~ 155 (423)
T 3mvd_K 78 VDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAG--DSHSACLLEDGRVFAWGSFR 155 (423)
T ss_dssp EEEEECSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEEC--SSEEEEEETTSCEEEEECEE
T ss_pred eEEeeCCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEcC--cCeEEEEeCCCeEEEEeCCC
Q ss_pred ---------CCCceeEEEeecCCcceEEEEECCCCCEEEEEeCCCcEEEE-----------------------eCCcccC
Q 043172 422 ---------RTRTCIHRAVDEGCINGTALCTSPDGTFFAAGSDSGIVNVY-----------------------NRQEFLG 469 (564)
Q Consensus 422 ---------~~~~~~~~~~~~~~~~i~~l~~sp~g~~lasgs~dg~V~iw-----------------------d~~~~~~ 469 (564)
................|..|+.... +.++-..+|.|+.| .....
T Consensus 156 n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G~~--hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~-- 231 (423)
T 3mvd_K 156 DSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGAD--HLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLL-- 231 (423)
T ss_dssp CSSSEEESBTTBCEEEEEESSTTCCEEEEEECSS--EEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTS--
T ss_pred CCCCCcCcCCCCCCceeeEecCCCcEEEEecCCC--eEEEEecCCeEEEeeCCcCCccCCCccccccccccccccccc--
Q ss_pred CcceeeEEccccccceeEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceecc---------CCCCCCCCCCcEEEEEeCC
Q 043172 470 GKRKPIKTIENLTTKVDFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSN---------WPPANRNLQYPRCLDFSPG 540 (564)
Q Consensus 470 ~~~~~~~~~~~~~~~I~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~---------~~~~~~~~~~V~~l~fspd 540 (564)
.|..........|..|+......+++... ++.|+.|-......+.. .|.... ...|..++...
T Consensus 232 ---~p~~v~~~~~~~v~~i~~g~~~~~~~~~~---~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~-~~~v~~ia~G~- 303 (423)
T 3mvd_K 232 ---RPTQLIITRAKPFEAIWATNYCTFMRESQ---TQVIWATGLNNFKQLAHETKGKEFALTPIKTE-LKDIRHIAGGQ- 303 (423)
T ss_dssp ---SCEEECCTTCCCEEEEEEETTEEEEEETT---TCCEEEEEECTTCTTSSCCTTCSEEEEEEEEC-CCSEEEEEECS-
T ss_pred ---CCeEEeecCCccEEEEEECCcEEEEEECC---CCeEEEEeCCCCCcCCCCCCCCceeeeeEEcC-CCCeEEEEccc-
Q ss_pred CCEEEEEcCCCeEEEEEcCCCCC
Q 043172 541 GGFMAVGNAAGKVFLYKLNHYHH 563 (564)
Q Consensus 541 g~~Lasgs~dG~V~lw~l~~~~~ 563 (564)
.+.++-..+|.|+.|--+.+-+
T Consensus 304 -~ht~alt~~G~v~~wG~n~~Gq 325 (423)
T 3mvd_K 304 -HHTVILTTDLKCSVVGRPEYGR 325 (423)
T ss_dssp -SEEEEEETTCCEEEEECCGGGT
T ss_pred -CeEEEEeCCCcEEEEECCCCCC
No 386
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=37.49 E-value=1.6e+02 Score=33.99 Aligned_cols=32 Identities=9% Similarity=-0.031 Sum_probs=27.1
Q ss_pred CcEEEEEeCCCCEEEEEcCCCeEEEEEcCCCC
Q 043172 531 YPRCLDFSPGGGFMAVGNAAGKVFLYKLNHYH 562 (564)
Q Consensus 531 ~V~~l~fspdg~~Lasgs~dG~V~lw~l~~~~ 562 (564)
.+.+++..++..+|++-+.|++++||++.+++
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~ 270 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQ 270 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCC
Confidence 45666778888999999999999999998763
No 387
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=37.03 E-value=4.3e+02 Score=28.47 Aligned_cols=101 Identities=8% Similarity=0.037 Sum_probs=47.5
Q ss_pred EEEEEEecC-CCEEEEEeCCCeEEEE-ECC----CCceeEEEeecC--CcceEEEEECCCCCEEEEEeCC-CcEEEEeCC
Q 043172 395 VRSLAFADD-GKQLLSSGGDGQVYHW-DLR----TRTCIHRAVDEG--CINGTALCTSPDGTFFAAGSDS-GIVNVYNRQ 465 (564)
Q Consensus 395 V~~l~~spd-g~~l~s~s~dg~V~lw-D~~----~~~~~~~~~~~~--~~~i~~l~~sp~g~~lasgs~d-g~V~iwd~~ 465 (564)
+..|++.|. ...|+.+. ++.|+.- |.. .+.....+...+ ...+..+...|.+..|++|..| |.+.--|+.
T Consensus 385 ~~~l~idp~~~~~~~~g~-~~g~~~s~d~g~w~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~l~~~~~d~g~~~~~d~~ 463 (737)
T 2cn3_A 385 IGDIEIDPFNSDRMMYVT-GATIYGCDNLTDWDRGGKVKIEVKATGIEECAVLDLVSPPEGAPLVSAVGDLVGFVHDDLK 463 (737)
T ss_dssp CCCEEECTTCTTCEEEEC-SSCEEEESCGGGGGGTCCEEEEECCTTCBCCBEEEEECCSSSCSEEEEETTTBCCEESSTT
T ss_pred cccEEECCCCCCcEEEeC-CCeEEeecCCCccccCCceeEEEcCCCceeeeeeeEEcCCCCCeeEEEEeccCCeEEcccc
Confidence 457888884 34566664 5555442 111 011111111111 1233455556777666666554 344333444
Q ss_pred cccCCcceeeEEccccccceeEEEEcCC--CcEEEEEec
Q 043172 466 EFLGGKRKPIKTIENLTTKVDFMKFNND--AQILAICST 502 (564)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~I~~l~fspd--g~~La~~s~ 502 (564)
.. +...+.........|+|... ..+++++..
T Consensus 464 ~~------~~~~~~~~~~~~~~i~~ag~~~~~~v~vG~~ 496 (737)
T 2cn3_A 464 VG------PKKMHVPSYSSGTGIDYAELVPNFMALVAKA 496 (737)
T ss_dssp SC------CSSCSCTTCSEEEEEEEETTEEEEEEEEEEC
T ss_pred cC------CccccCCccccccceeecccCCCeEEEEECc
Confidence 32 11111222334667888765 345667765
No 388
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=36.91 E-value=1.5e+02 Score=23.28 Aligned_cols=26 Identities=8% Similarity=0.003 Sum_probs=15.5
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEeCCc
Q 043172 439 TALCTSPDGTFFAAGSDSGIVNVYNRQE 466 (564)
Q Consensus 439 ~~l~~sp~g~~lasgs~dg~V~iwd~~~ 466 (564)
..+.+..+|++++... ++.+ +|...+
T Consensus 59 ~~l~l~~dGNLVl~d~-~~~~-iW~S~t 84 (113)
T 3mez_B 59 CFMRLGHSGELDITDD-RLNT-VFVSNT 84 (113)
T ss_dssp CEEEECTTSCEEEECT-TSCE-EEECSC
T ss_pred EEEEEeCCCcEEEECC-CCCE-EEECCC
Confidence 3567777887766543 3443 676554
No 389
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=32.34 E-value=2e+02 Score=31.04 Aligned_cols=69 Identities=4% Similarity=0.130 Sum_probs=42.7
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccc-------------cceeEEEEcCCCcEEEEEecCC
Q 043172 438 GTALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLT-------------TKVDFMKFNNDAQILAICSTMK 504 (564)
Q Consensus 438 i~~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~-------------~~I~~l~fspdg~~La~~s~~~ 504 (564)
|.++.+ +..++++-+.|.++++|++.++ +++.+..-.. .+-.-+... +.++++-+...
T Consensus 224 Is~~~~--~~~fLftL~~Dh~LRiWsL~t~-----~lv~t~DL~~~~~~~~s~L~~~~~~~~~Lrl~--~~~lv~y~P~~ 294 (729)
T 3f7f_A 224 ISCKLF--HERYLIVLTQNCHLKIWDLTSF-----TLIQDYDMVSQSDSDPSHFRKVEAVGEYLSLY--NNTLVTLLPLE 294 (729)
T ss_dssp EEEEEE--TTTEEEEEETTCEEEEEETTTT-----EEEEEEETTTTSCCCSSCCCCCCSCCCCEEES--SSEEEEEETTT
T ss_pred EEEecc--CCcEEEEEEcCCeEEEEEcCCC-----ceEEeeccccCccccccccCcccCcchhHhhe--eeEEEEEecCC
Confidence 444443 4679999999999999999987 5444432100 010111111 35666656555
Q ss_pred CCeEEEEEcCC
Q 043172 505 KNSLKLIHIPS 515 (564)
Q Consensus 505 d~~I~lwdl~s 515 (564)
.|..++|.+..
T Consensus 295 ~G~Fk~~~l~~ 305 (729)
T 3f7f_A 295 NGLFQMGTLLV 305 (729)
T ss_dssp TCEEEEEEEEC
T ss_pred CCeEEEEEEEE
Confidence 78999998843
No 390
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=30.44 E-value=67 Score=34.80 Aligned_cols=36 Identities=19% Similarity=0.248 Sum_probs=29.0
Q ss_pred EEEEEEecCCCEEEEEeCCCeEEEEECCCCceeEEEee
Q 043172 395 VRSLAFADDGKQLLSSGGDGQVYHWDLRTRTCIHRAVD 432 (564)
Q Consensus 395 V~~l~~spdg~~l~s~s~dg~V~lwD~~~~~~~~~~~~ 432 (564)
|.++.+ +..++++.+.|.++++|++.+++++.....
T Consensus 224 Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 224 ISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred EEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 444443 477999999999999999999998876654
No 391
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=29.10 E-value=5.7e+02 Score=27.47 Aligned_cols=63 Identities=10% Similarity=-0.077 Sum_probs=37.1
Q ss_pred cCeEEEEEeeCC-CEEEEEeCCCeEEEEECCCCceeeeccccccC---CcceEEEEEcCC-CCEEEEE
Q 043172 307 CPVRKASFLPDG-SQAIIAGRRKFFYSLDLVKAKADKIGPLVGRE---EKSLEFFEVSPD-SSVIAFV 369 (564)
Q Consensus 307 ~~I~~l~fspdg-~~l~s~~~dg~i~iwdl~~~~~~~~~~~~~~~---~~~v~~~~~spd-g~~la~~ 369 (564)
+.|..++++|.. ..|+++...+.|+.++-.......+....+.. ...|.++++.|. .+.++++
T Consensus 23 g~i~~i~~~p~~~~~~~~~~~~ggv~rS~D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~ 90 (737)
T 2cn3_A 23 GFMPGIVFNETEKDLIYARAAIGGAYRWDPSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIV 90 (737)
T ss_dssp SCCCEEEECSSSTTCEEEECSSSCEEEEETTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEE
T ss_pred ceeeEEEECCCCCCEEEEEecCCcEEEeCCCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEE
Confidence 378999999863 56666665666776664444444433211111 135899999983 3444443
No 392
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=24.42 E-value=2.5e+02 Score=21.71 Aligned_cols=47 Identities=15% Similarity=0.044 Sum_probs=27.7
Q ss_pred eEEEEcCCCcEEEEEecCCCCeEEEEEcCCCceeccCCCCCCCCCCcEEEEEeCCCCEEEEE
Q 043172 486 DFMKFNNDAQILAICSTMKKNSLKLIHIPSYNVFSNWPPANRNLQYPRCLDFSPGGGFMAVG 547 (564)
Q Consensus 486 ~~l~fspdg~~La~~s~~~d~~I~lwdl~s~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasg 547 (564)
..+.+..||.+++... ++. .+|...+.. ......+..-++|.+++.+
T Consensus 53 ~~L~l~~dGnLvL~d~---~~~-~vWss~t~~-----------~~~~~~l~L~ddGNlVly~ 99 (105)
T 4h3o_A 53 CSAVLQSDGNFVVYDS---SGR-SLWASHSTR-----------GSGNYILILQDDGNVIIYG 99 (105)
T ss_dssp CEEEECTTSCEEEECT---TCC-EEEECCCCC-----------CSSCEEEEECTTSCEEEEE
T ss_pred EEEEEeCCccEEEECC---CcE-EEEEecCCC-----------CCCCEEEEEeCCCeEEEEC
Confidence 3588889998877643 233 467654311 0112346677788877764
No 393
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=23.19 E-value=20 Score=19.62 Aligned_cols=9 Identities=78% Similarity=1.032 Sum_probs=6.8
Q ss_pred hhhhhhhcc
Q 043172 152 VNRLRKLRK 160 (564)
Q Consensus 152 ~~r~~klr~ 160 (564)
..||||||+
T Consensus 14 qerlrklrk 22 (27)
T 3twe_A 14 QERLRKLRK 22 (27)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 568888875
No 394
>3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A*
Probab=20.22 E-value=3.1e+02 Score=21.27 Aligned_cols=44 Identities=9% Similarity=0.138 Sum_probs=24.3
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCcccCCcceeeEEccccccceeEEEEcCCCcEEE
Q 043172 440 ALCTSPDGTFFAAGSDSGIVNVYNRQEFLGGKRKPIKTIENLTTKVDFMKFNNDAQILA 498 (564)
Q Consensus 440 ~l~~sp~g~~lasgs~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~I~~l~fspdg~~La 498 (564)
.+.+..+|++++... ++. .||..... .......+.+.++|.+++
T Consensus 54 ~l~l~~dGNLVl~~~-~~~-~~W~S~t~-------------~~~g~~~l~l~~dGnlvl 97 (110)
T 3a0c_A 54 RLTLHNNGNLVIYDQ-SNR-VIWQTKTN-------------GKEDHYVLVLQQDRNVVI 97 (110)
T ss_dssp EEEECTTSCEEEECT-TCC-EEEECCCC-------------CSSSCCEEEECTTSCEEE
T ss_pred EEEEeCCCCEEEECC-CCc-EEEecCCC-------------CCCCCEEEEEeCCccEEE
Confidence 466777787666543 333 36764432 111234567777777554
Done!