BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043175
(139 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
Length = 174
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 58/127 (45%), Gaps = 5/127 (3%)
Query: 6 GFRFQPSNEQIFC-LLEKKRLNPHFSHHTIKDIDDICGLEPWDLAGASKTESEDRVXXXX 64
GFRF P++E++ L +K FS I +ID + +PW L +K ++
Sbjct: 23 GFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEID-LYKFDPWVLP--NKALFGEKEWYFF 79
Query: 65 XXXXXXXXXSTRAHRRTNAGYWKVTGRGSKIKTRNGLSGTKKILTFQYHGPASKKAKIGW 124
+R +R +GYWK TG I T G KK L F Y G A K K W
Sbjct: 80 SPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVF-YIGKAPKGTKTNW 138
Query: 125 VMHEYHV 131
+MHEY +
Sbjct: 139 IMHEYRL 145
>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
Length = 171
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 58/127 (45%), Gaps = 5/127 (3%)
Query: 6 GFRFQPSNEQIFC-LLEKKRLNPHFSHHTIKDIDDICGLEPWDLAGASKTESEDRVXXXX 64
GFRF P++E++ L +K FS I +ID + +PW L +K ++
Sbjct: 20 GFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEID-LYKFDPWVLP--NKALFGEKEWYFF 76
Query: 65 XXXXXXXXXSTRAHRRTNAGYWKVTGRGSKIKTRNGLSGTKKILTFQYHGPASKKAKIGW 124
+R +R +GYWK TG I T G KK L F Y G A K K W
Sbjct: 77 SPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVF-YIGKAPKGTKTNW 135
Query: 125 VMHEYHV 131
+MHEY +
Sbjct: 136 IMHEYRL 142
>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
Stress-Responsive Nac1
Length = 174
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 54/127 (42%), Gaps = 5/127 (3%)
Query: 6 GFRFQPSNEQIFC-LLEKKRLNPHFSHHTIKDIDDICGLEPWDLAGASKTESEDRVXXXX 64
GFRF P+++++ L +K I ++D + +PWDL + R
Sbjct: 18 GFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVD-LYKFDPWDLP--ERALFGAREWYFF 74
Query: 65 XXXXXXXXXSTRAHRRTNAGYWKVTGRGSKIKTRNGLSGTKKILTFQYHGPASKKAKIGW 124
+R +R GYWK TG + R G KK L F Y G A + K W
Sbjct: 75 TPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVF-YAGKAPRGVKTDW 133
Query: 125 VMHEYHV 131
+MHEY +
Sbjct: 134 IMHEYRL 140
>pdb|3P2L|A Chain A, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
From Francisella Tularensis
pdb|3P2L|B Chain B, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
From Francisella Tularensis
pdb|3P2L|C Chain C, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
From Francisella Tularensis
pdb|3P2L|D Chain D, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
From Francisella Tularensis
pdb|3P2L|E Chain E, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
From Francisella Tularensis
pdb|3P2L|F Chain F, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
From Francisella Tularensis
pdb|3P2L|G Chain G, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
From Francisella Tularensis
Length = 201
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 2 ESLMGFRFQPSNEQIFC---LLEKKRLNPHFSHHTIKDIDDIC 41
+ L GFR Q S+ +I L K RLN +HHT +D++ I
Sbjct: 127 QPLGGFRGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIV 169
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,082,828
Number of Sequences: 62578
Number of extensions: 134311
Number of successful extensions: 210
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 204
Number of HSP's gapped (non-prelim): 4
length of query: 139
length of database: 14,973,337
effective HSP length: 89
effective length of query: 50
effective length of database: 9,403,895
effective search space: 470194750
effective search space used: 470194750
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)