Query 043175
Match_columns 139
No_of_seqs 113 out of 857
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 13:39:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043175.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043175hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02365 NAM: No apical merist 100.0 2.1E-49 4.5E-54 279.2 7.4 127 3-132 1-129 (129)
2 PHA00692 hypothetical protein 70.5 1.6 3.4E-05 26.6 0.2 9 2-10 36-44 (74)
3 cd00490 Met_repressor_MetJ Met 57.9 11 0.00023 24.9 2.3 39 10-52 50-88 (103)
4 PRK05264 transcriptional repre 53.4 12 0.00027 24.8 2.1 39 10-52 51-89 (105)
5 KOG3238 Chloride ion current i 50.8 16 0.00035 27.7 2.6 59 4-62 110-168 (216)
6 PF07960 CBP4: CBP4; InterPro 47.9 10 0.00022 26.7 1.1 11 10-20 30-40 (128)
7 smart00265 BH4 BH4 Bcl-2 homol 45.8 28 0.00061 17.7 2.3 21 11-31 3-23 (27)
8 COG3060 MetJ Transcriptional r 43.9 15 0.00032 24.1 1.4 39 10-52 51-89 (105)
9 PF01340 MetJ: Met Apo-repress 43.7 16 0.00035 24.2 1.5 39 10-52 50-88 (104)
10 PF13822 ACC_epsilon: Acyl-CoA 41.7 14 0.00031 22.4 1.0 9 10-18 10-18 (62)
11 smart00707 RPEL Repeat in Dros 39.2 22 0.00049 17.9 1.3 13 6-18 6-18 (26)
12 cd00954 NAL N-Acetylneuraminic 37.1 19 0.00041 28.2 1.3 19 3-22 103-121 (288)
13 PLN02417 dihydrodipicolinate s 36.7 20 0.00043 28.0 1.4 18 3-21 103-120 (280)
14 TIGR02313 HpaI-NOT-DapA 2,4-di 35.5 22 0.00048 28.0 1.5 19 3-22 102-120 (294)
15 cd00952 CHBPH_aldolase Trans-o 34.4 22 0.00049 28.2 1.3 18 2-20 109-126 (309)
16 PF08338 DUF1731: Domain of un 34.2 31 0.00067 19.8 1.6 16 5-20 31-47 (48)
17 PF01473 CW_binding_1: Putativ 31.7 38 0.00082 15.2 1.4 8 58-65 7-14 (19)
18 cd00950 DHDPS Dihydrodipicolin 31.4 29 0.00062 27.0 1.4 28 2-31 101-128 (284)
19 TIGR00674 dapA dihydrodipicoli 29.7 35 0.00077 26.6 1.7 19 3-22 100-118 (285)
20 PRK03170 dihydrodipicolinate s 29.3 34 0.00073 26.8 1.5 27 3-31 103-129 (292)
21 PRK04147 N-acetylneuraminate l 26.8 37 0.0008 26.6 1.4 27 3-31 106-132 (293)
22 PF07131 DUF1382: Protein of u 26.5 47 0.001 20.2 1.5 14 5-18 22-39 (61)
23 PF09174 Maf1: Maf1 regulator; 24.0 18 0.00039 26.7 -0.9 13 35-47 137-149 (179)
24 PF12672 DUF3793: Protein of u 23.4 53 0.0011 24.1 1.6 39 6-50 83-122 (176)
25 TIGR03249 KdgD 5-dehydro-4-deo 23.3 50 0.0011 26.0 1.5 27 3-31 106-132 (296)
26 PF02755 RPEL: RPEL repeat; I 22.9 51 0.0011 16.5 1.0 10 9-18 9-18 (26)
27 COG2326 Uncharacterized conser 22.7 76 0.0016 25.1 2.3 28 4-31 100-131 (270)
28 PF02180 BH4: Bcl-2 homology r 22.4 80 0.0017 16.1 1.6 19 12-30 4-22 (27)
29 PRK14390 hypothetical protein; 22.3 39 0.00084 20.8 0.5 43 3-48 13-55 (63)
30 cd00408 DHDPS-like Dihydrodipi 22.0 55 0.0012 25.2 1.5 27 3-31 99-125 (281)
31 PF02375 JmjN: jmjN domain; I 22.0 45 0.00097 17.8 0.7 11 8-18 2-12 (34)
32 PRK03620 5-dehydro-4-deoxygluc 21.6 52 0.0011 26.0 1.3 27 3-31 108-134 (303)
33 COG4802 FtrB Ferredoxin-thiore 20.1 85 0.0018 21.3 1.9 31 5-36 20-56 (110)
No 1
>PF02365 NAM: No apical meristem (NAM) protein; InterPro: IPR003441 The NAC domain (for Petunia hybrida (Petunia) NAM and for Arabidopsis ATAF1, ATAF2, and CUC2) is an N-terminal module of ~160 amino acids, which is found in proteins of the NAC family of plant-specific transcriptional regulators (no apical meristem (NAM) proteins) []. NAC proteins are involved in developmental processes, including formation of the shoot apical meristem, floral organs and lateral shoots, as well as in plant hormonal control and defence. The NAC domain is accompanied by diverse C-terminal transcriptional activation domains. The NAC domain has been shown to be a DNA-binding domain (DBD) and a dimerization domain [,]. The NAC domain can be subdivided into five subdomains (A-E). Each subdomain is distinguishable by blocks of heterogeneous amino acids or gaps. While the NAC domains were rich in basic amino acids (R, K and H) as a whole, the distribution of positive and negative amino acids in each subdomain were unequal. Subdomains C and D are rich in basic amino acids but poor in acidic amino acids, while subdomain B contains a high proportion of acidic amino acids. Putative nuclear localization signals (NLS) have been detected in subdomains C and D []. The DBD is contained within a 60 amino acid region located within subdomains D and E []. The overall structure of the NAC domain monomer consists of a very twisted antiparallel beta-sheet, which packs against an N-terminal alpha-helix on one side and one shorter helix on the other side surrounded by a few helical elements. The structure suggests that the NAC domain mediates dimerization through conserved interactions including a salt bridge, and DNA binding through the NAC dimer face rich in positive charges [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1UT4_A 3SWM_B 4DUL_B 3SWP_D 1UT7_B 3ULX_A.
Probab=100.00 E-value=2.1e-49 Score=279.16 Aligned_cols=127 Identities=34% Similarity=0.610 Sum_probs=96.6
Q ss_pred CCCceeEcCChHHHHHHHHhHhcCCCCCCC-CeeeecCCCCCCCcCccccCccCCCCceEEEEeccccccCCCCcceeec
Q 043175 3 SLMGFRFQPSNEQIFCLLEKKRLNPHFSHH-TIKDIDDICGLEPWDLAGASKTESEDRVCYFFCKPCYKYKKSTRAHRRT 81 (139)
Q Consensus 3 lp~G~rF~PtDeELi~~yL~~k~~g~~~~~-~~I~~~Dvy~~~P~~L~~~~~~~~~~~~~yFF~~~~~~~~~~~r~~R~~ 81 (139)
|||||||+|||+|||.+||++|+.|.+++. ++|+++|||++|||+|+... .+++.+||||+++++++.+++|.+|++
T Consensus 1 LP~G~rF~PtD~ELi~~yL~~k~~g~~~~~~~~i~~~Diy~~~P~~L~~~~--~~~~~~~yFF~~~~~~~~~~~r~~R~~ 78 (129)
T PF02365_consen 1 LPPGFRFRPTDEELINHYLRPKILGEPLPCEDVIHDVDIYSAHPWELPAKF--KGGDEEWYFFSPRKKKYPNGGRPNRVT 78 (129)
T ss_dssp --TTEEE---HHHHHHCTHHHHHTT-HHCS-CHSEE--GGGS-GGGCHHHS--SS-SSEEEEEEE----------S-EEE
T ss_pred CCCceEecCChHHHHHHHHHHHhcCCCCCcccceeecccCccChHHhhhhc--cCCCceEEEEEecccccCCcccccccc
Confidence 899999999999999999999999999887 89999999999999999432 336779999999999999999999999
Q ss_pred ccceeEecCCCeEEec-CCceEeeeEEEEEEeeCCCCCCCCcCeEEEEEEeC
Q 043175 82 NAGYWKVTGRGSKIKT-RNGLSGTKKILTFQYHGPASKKAKIGWVMHEYHVN 132 (139)
Q Consensus 82 ~~G~W~~~g~~~~i~~-~~~~~G~k~~l~f~~~~~~~~~~kt~W~M~EY~l~ 132 (139)
++|+||++|+.++|.+ ++.++|+|++|+| |.++.+++.+|+|+||||+|.
T Consensus 79 ~~G~Wk~~g~~~~i~~~~g~~iG~k~~l~f-~~~~~~~~~kt~W~M~EY~L~ 129 (129)
T PF02365_consen 79 GGGYWKSTGKEKPIKDPGGKVIGFKKTLVF-YSGKSPNGKKTGWVMHEYSLE 129 (129)
T ss_dssp TTEEEEEECEEEEEEE-TTCEEEEEEEEEE-EESSTTS-EEEEEEEEEEEE-
T ss_pred cceEEeecccccccccccceeeeeEEEEEE-EeccCCCCCcCCeEEEEEEeC
Confidence 9999999999999998 7799999999999 888778889999999999984
No 2
>PHA00692 hypothetical protein
Probab=70.48 E-value=1.6 Score=26.62 Aligned_cols=9 Identities=56% Similarity=0.788 Sum_probs=7.8
Q ss_pred CCCCceeEc
Q 043175 2 ESLMGFRFQ 10 (139)
Q Consensus 2 ~lp~G~rF~ 10 (139)
+.||||||-
T Consensus 36 eyppgfrfg 44 (74)
T PHA00692 36 EYPPGFRFG 44 (74)
T ss_pred ecCCCcccc
Confidence 679999996
No 3
>cd00490 Met_repressor_MetJ Met Repressor, MetJ. MetJ is a bacterial regulatory protein that uses S-adenosylmethionine (SAM) as a corepressor to regulate the production of Methionine. MetJ binds arrays of two to five adjacent copies of an eight base-pair 'metbox' sequence. MetJ forms sufficiently strong interactions with the sugar-phosphate backbone to accomodate sequence variation in natural operators. However, it is very sensitive to particular base changes in the operator. MetJ exists as a homodimer.
Probab=57.87 E-value=11 Score=24.94 Aligned_cols=39 Identities=10% Similarity=0.104 Sum_probs=31.7
Q ss_pred cCChHHHHHHHHhHhcCCCCCCCCeeeecCCCCCCCcCccccC
Q 043175 10 QPSNEQIFCLLEKKRLNPHFSHHTIKDIDDICGLEPWDLAGAS 52 (139)
Q Consensus 10 ~PtDeELi~~yL~~k~~g~~~~~~~I~~~Dvy~~~P~~L~~~~ 52 (139)
|-|..||++.-...-..|+|+|. +.|+-...|.+||...
T Consensus 50 HATNSELLCEAFLHAfTGQPLP~----D~Dl~K~~~d~iP~~a 88 (103)
T cd00490 50 HATNSELLCEAFLHAFTGQPLPD----DADLRKERSDEIPEAA 88 (103)
T ss_pred hcccHHHHHHHHHHHhcCCCCCC----hhhhhhcCcccccHHH
Confidence 35677888877777899999996 6788888999998764
No 4
>PRK05264 transcriptional repressor protein MetJ; Provisional
Probab=53.45 E-value=12 Score=24.76 Aligned_cols=39 Identities=10% Similarity=0.130 Sum_probs=31.4
Q ss_pred cCChHHHHHHHHhHhcCCCCCCCCeeeecCCCCCCCcCccccC
Q 043175 10 QPSNEQIFCLLEKKRLNPHFSHHTIKDIDDICGLEPWDLAGAS 52 (139)
Q Consensus 10 ~PtDeELi~~yL~~k~~g~~~~~~~I~~~Dvy~~~P~~L~~~~ 52 (139)
|-|..||++.-...-..|+|+|. +.|+-...|..+|...
T Consensus 51 HATNSELLCEAFLHA~TGQPLP~----D~Dl~Kd~~d~ip~~a 89 (105)
T PRK05264 51 HATNSELLCEAFLHAFTGQPLPD----DEDLRKERSDEIPEAA 89 (105)
T ss_pred hcccHHHHHHHHHHHHcCCCCCC----hhhhhhcCcccchHHH
Confidence 35677888877777899999996 6788888899998654
No 5
>KOG3238 consensus Chloride ion current inducer protein [Inorganic ion transport and metabolism]
Probab=50.75 E-value=16 Score=27.71 Aligned_cols=59 Identities=15% Similarity=0.211 Sum_probs=33.8
Q ss_pred CCceeEcCChHHHHHHHHhHhcCCCCCCCCeeeecCCCCCCCcCccccCccCCCCceEE
Q 043175 4 LMGFRFQPSNEQIFCLLEKKRLNPHFSHHTIKDIDDICGLEPWDLAGASKTESEDRVCY 62 (139)
Q Consensus 4 p~G~rF~PtDeELi~~yL~~k~~g~~~~~~~I~~~Dvy~~~P~~L~~~~~~~~~~~~~y 62 (139)
--+|||+|+|..-+.-.--.....+.+......+.+-|.-+=|+.-......++...||
T Consensus 110 i~e~rfvpsDk~~l~a~f~qfcecqel~p~P~ED~~~~dgee~~mea~d~~~gDs~~~~ 168 (216)
T KOG3238|consen 110 ITEFRFVPSDKSALEAMFTQFCECQELNPDPDEDEDDYDGEEYDMEAHDAGQGDSPNSY 168 (216)
T ss_pred cccceecCCchhHHHHHHHHHHhhhhcCCCccccccccccchhhhhhhhccCCCCcccc
Confidence 35799999998877654444444444433335666667666666654432233333333
No 6
>PF07960 CBP4: CBP4; InterPro: IPR012420 The CBP4 gene in Saccharomyces cerevisiae is essential for the expression and activity of ubiquinol-cytochrome c reductase [, ]. This family appears to be fungal specific.
Probab=47.88 E-value=10 Score=26.69 Aligned_cols=11 Identities=27% Similarity=0.609 Sum_probs=9.5
Q ss_pred cCChHHHHHHH
Q 043175 10 QPSNEQIFCLL 20 (139)
Q Consensus 10 ~PtDeELi~~y 20 (139)
.||||||+..|
T Consensus 30 tPTeEeL~~r~ 40 (128)
T PF07960_consen 30 TPTEEELFKRY 40 (128)
T ss_pred CCCHHHHHHhc
Confidence 49999999875
No 7
>smart00265 BH4 BH4 Bcl-2 homology region 4.
Probab=45.75 E-value=28 Score=17.74 Aligned_cols=21 Identities=10% Similarity=0.018 Sum_probs=16.4
Q ss_pred CChHHHHHHHHhHhcCCCCCC
Q 043175 11 PSNEQIFCLLEKKRLNPHFSH 31 (139)
Q Consensus 11 PtDeELi~~yL~~k~~g~~~~ 31 (139)
.+-.|||.+|+.-|+...-.+
T Consensus 3 ~~nRelV~~yv~yKLsQrgy~ 23 (27)
T smart00265 3 LDNRELVVDYVTYKLSQNGYE 23 (27)
T ss_pred cchHHHHHHHHHHHHhhcCCC
Confidence 356899999999998865543
No 8
>COG3060 MetJ Transcriptional regulator of met regulon [Transcription / Amino acid transport and metabolism]
Probab=43.94 E-value=15 Score=24.09 Aligned_cols=39 Identities=10% Similarity=0.098 Sum_probs=31.2
Q ss_pred cCChHHHHHHHHhHhcCCCCCCCCeeeecCCCCCCCcCccccC
Q 043175 10 QPSNEQIFCLLEKKRLNPHFSHHTIKDIDDICGLEPWDLAGAS 52 (139)
Q Consensus 10 ~PtDeELi~~yL~~k~~g~~~~~~~I~~~Dvy~~~P~~L~~~~ 52 (139)
+-|..||++.-...-..|+|+|. +.|+....|.+||+..
T Consensus 51 hatnsellceaflhaftgqplpt----d~dl~ker~deipe~a 89 (105)
T COG3060 51 HATNSELLCEAFLHAFTGQPLPT----DADLRKERSDEIPEAA 89 (105)
T ss_pred hhhhHHHHHHHHHHHHcCCCCCC----cHHHHHhccccchHHH
Confidence 35677888877777889999985 7888888889998764
No 9
>PF01340 MetJ: Met Apo-repressor, MetJ; InterPro: IPR002084 Binding of a specific DNA fragment and S-adenosyl methionine (SAM) co-repressor molecules to the Escherichia coli methionine repressor (MetJ) leads to a significant reduction in dynamic flexibility of the ternary complex, with considerable entropy-enthalpy compensation, not necessarily involving any overall conformational change []. MetJ is a regulatory protein which when combined with S-adenosylmethionine (SAM) represses the expression of the methionine regulon and of enzymes involved in SAM synthesis. It is also autoregulated. The crystal structure of the met repressor-operator complex shows two dimeric repressor molecules bound to adjacent sites 8 base pairs apart on an 18-base-pair DNA fragment. Sequence specificity is achieved by insertion of double-stranded antiparallel protein beta-ribbons into the major groove of B-form DNA, with direct hydrogen-bonding between amino-acid side chains and the base pairs. The repressor also recognises sequence-dependent distortion or flexibility of the operator phosphate backbone, conferring specificity even for inaccessible base pairs [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006555 methionine metabolic process; PDB: 1MJO_D 1CMB_A 1MJQ_C 1CMC_B 1MJK_A 1MJ2_A 1MJP_A 1MJM_B 1CMA_B 1MJL_A ....
Probab=43.68 E-value=16 Score=24.15 Aligned_cols=39 Identities=13% Similarity=0.182 Sum_probs=24.6
Q ss_pred cCChHHHHHHHHhHhcCCCCCCCCeeeecCCCCCCCcCccccC
Q 043175 10 QPSNEQIFCLLEKKRLNPHFSHHTIKDIDDICGLEPWDLAGAS 52 (139)
Q Consensus 10 ~PtDeELi~~yL~~k~~g~~~~~~~I~~~Dvy~~~P~~L~~~~ 52 (139)
|-|..||++.-...-..|+|+|. +.|+-...|..+|...
T Consensus 50 HATNSeLLcEAFLHAfTGQPLP~----D~dl~kd~~d~ip~~~ 88 (104)
T PF01340_consen 50 HATNSELLCEAFLHAFTGQPLPT----DDDLRKDRPDEIPAEA 88 (104)
T ss_dssp S-SHHHHHHHHHHHHHH----------TTGGGSTSGSSS-HHH
T ss_pred hcccHHHHHHHHHHHhcCCCCCC----hhhhhhcCCccchHHH
Confidence 45778888877777889999986 6788888999998764
No 10
>PF13822 ACC_epsilon: Acyl-CoA carboxylase epsilon subunit
Probab=41.73 E-value=14 Score=22.43 Aligned_cols=9 Identities=22% Similarity=0.678 Sum_probs=7.6
Q ss_pred cCChHHHHH
Q 043175 10 QPSNEQIFC 18 (139)
Q Consensus 10 ~PtDeELi~ 18 (139)
+||||||-.
T Consensus 10 nPt~eElAA 18 (62)
T PF13822_consen 10 NPTDEELAA 18 (62)
T ss_pred CCCHHHHHH
Confidence 799999865
No 11
>smart00707 RPEL Repeat in Drosophila CG10860, human KIAA0680 and C. elegans F26H9.2.
Probab=39.24 E-value=22 Score=17.94 Aligned_cols=13 Identities=15% Similarity=0.263 Sum_probs=10.6
Q ss_pred ceeEcCChHHHHH
Q 043175 6 GFRFQPSNEQIFC 18 (139)
Q Consensus 6 G~rF~PtDeELi~ 18 (139)
....+|+.+|||.
T Consensus 6 kl~~RP~~eeLv~ 18 (26)
T smart00707 6 KLSQRPTREELEE 18 (26)
T ss_pred HHHcCCCHHHHHH
Confidence 3567899999997
No 12
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=37.06 E-value=19 Score=28.23 Aligned_cols=19 Identities=16% Similarity=-0.106 Sum_probs=14.0
Q ss_pred CCCceeEcCChHHHHHHHHh
Q 043175 3 SLMGFRFQPSNEQIFCLLEK 22 (139)
Q Consensus 3 lp~G~rF~PtDeELi~~yL~ 22 (139)
+||- .|.||++||+.||..
T Consensus 103 ~~P~-y~~~~~~~i~~~~~~ 121 (288)
T cd00954 103 ITPF-YYKFSFEEIKDYYRE 121 (288)
T ss_pred eCCC-CCCCCHHHHHHHHHH
Confidence 4554 478999999997653
No 13
>PLN02417 dihydrodipicolinate synthase
Probab=36.68 E-value=20 Score=28.04 Aligned_cols=18 Identities=17% Similarity=0.052 Sum_probs=14.4
Q ss_pred CCCceeEcCChHHHHHHHH
Q 043175 3 SLMGFRFQPSNEQIFCLLE 21 (139)
Q Consensus 3 lp~G~rF~PtDeELi~~yL 21 (139)
+|| +.|.||++||+.||-
T Consensus 103 ~~P-~y~~~~~~~i~~~f~ 120 (280)
T PLN02417 103 INP-YYGKTSQEGLIKHFE 120 (280)
T ss_pred cCC-ccCCCCHHHHHHHHH
Confidence 466 558999999999774
No 14
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=35.47 E-value=22 Score=28.02 Aligned_cols=19 Identities=11% Similarity=0.277 Sum_probs=14.4
Q ss_pred CCCceeEcCChHHHHHHHHh
Q 043175 3 SLMGFRFQPSNEQIFCLLEK 22 (139)
Q Consensus 3 lp~G~rF~PtDeELi~~yL~ 22 (139)
+||-| |.||+++|+.||-.
T Consensus 102 ~pP~y-~~~~~~~l~~~f~~ 120 (294)
T TIGR02313 102 IVPYY-NKPNQEALYDHFAE 120 (294)
T ss_pred cCccC-CCCCHHHHHHHHHH
Confidence 45554 88999999997643
No 15
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=34.41 E-value=22 Score=28.24 Aligned_cols=18 Identities=0% Similarity=-0.138 Sum_probs=14.4
Q ss_pred CCCCceeEcCChHHHHHHH
Q 043175 2 ESLMGFRFQPSNEQIFCLL 20 (139)
Q Consensus 2 ~lp~G~rF~PtDeELi~~y 20 (139)
-+|| +.|.||+++|+.||
T Consensus 109 v~~P-~y~~~~~~~l~~yf 126 (309)
T cd00952 109 LGRP-MWLPLDVDTAVQFY 126 (309)
T ss_pred ECCC-cCCCCCHHHHHHHH
Confidence 3566 56889999999976
No 16
>PF08338 DUF1731: Domain of unknown function (DUF1731); InterPro: IPR013549 This domain of unknown function appears towards the C terminus of proteins of the NAD dependent epimerase/dehydratase family (IPR001509 from INTERPRO) in bacteria, eukaryotes and archaea. Many of the proteins in which it is found are involved in cell-division inhibition. ; PDB: 3OH8_A.
Probab=34.22 E-value=31 Score=19.81 Aligned_cols=16 Identities=38% Similarity=0.694 Sum_probs=8.8
Q ss_pred CceeEc-CChHHHHHHH
Q 043175 5 MGFRFQ-PSNEQIFCLL 20 (139)
Q Consensus 5 ~G~rF~-PtDeELi~~y 20 (139)
-||+|+ |+=++-+.+.
T Consensus 31 ~GF~F~~p~l~~AL~~l 47 (48)
T PF08338_consen 31 AGFQFRYPTLEEALRDL 47 (48)
T ss_dssp TT---S-SSHHHHHHH-
T ss_pred CCCcccCCCHHHHHhcc
Confidence 489998 8877776654
No 17
>PF01473 CW_binding_1: Putative cell wall binding repeat; InterPro: IPR018337 The cell wall-binding repeat (CW) is an about 20 amino acid residue module, essentially found in two bacterial Gram-positive protein families; the choline binding proteins and glucosyltransferases (2.4.1.5 from EC). In choline-binding proteins cell wall binding repeats bind to choline moieties of both teichoic and lipoteichoic acids, two components peculiar to the cell surface of Gram-positive bacteria [, ]. In glucosyltransferases the region spanning the CW repeats is a glucan binding domain []. Several crystal structures of CW have been solved [, ]. In the choline binding protein LytA, the repeats adopt a solenoid fold consisting exclusively of beta-hairpins that stack to form a left-handed superhelix with a boomerang-like shape. The choline groups bind between beta-hairpin 'steps' of the superhelix []. In Cpl-1 CW repeats assemble in two sub-domains: an N-terminal superhelical moiety similar to the LytA one and a C-terminal beta-sheet involved in interactions with the lysozyme domain. Choline is bound between repeats 1 and 2, and, 2 and 3 of the superhelical sub-domain []. Some proteins known to contain cell-wall binding repeats include: Pneumococcal N-acetylmuramoyl-L-alanine amidase (autolysin, lytA) (3.5.1.28 from EC). It is a surface-exposed enzyme that rules the self-destruction of pneumococcal cells through degradation of their peptidoglycan backbone. It mediates the release of toxic substances that damage the host tissues. Pneumococcal endo-beta-N-acetylglucosaminidase (lytB) (3.2.1.96 from EC). It plays an important role in cell wall degradation and cell separation. Pneumococcal teichoic acid phosphorylcholine esterase (pce or cbpE), a cell wall hydrolase important for cellular adhesion and colonisation. Lactobacillales glucosyltransferase. It catalyses the transfer of glucosyl units from the cleavage of sucrose to a growing chain of glucan. Clostridium difficile toxin A (tcdA) and toxin B (tcdb). They are the causative agents of the antibiotic-associated pseudomembranous colitis. They are intracellular acting toxins that reach their targets after receptor-mediated endocytosis. Clostridium acetobutylicum cspA protein. Siphoviridae bacteriophages N-acetylmuramoyl-L-alanine amidase. It lyses the bacterial host cell wall. Podoviridae lysozyme protein (cpl-1). It is capable of digesting the pneumococcal cell wall. The cell wall binding repeats are also known as the choline-binding repeats (ChBr) or the choline-binding domain (ChBD). ; PDB: 1GVM_C 2BML_B 1HCX_A 1OBA_A 1H09_A 2J8F_A 2IXU_A 2J8G_A 2IXV_A 2X8O_A ....
Probab=31.68 E-value=38 Score=15.20 Aligned_cols=8 Identities=25% Similarity=0.612 Sum_probs=6.4
Q ss_pred CceEEEEe
Q 043175 58 DRVCYFFC 65 (139)
Q Consensus 58 ~~~~yFF~ 65 (139)
++.||||.
T Consensus 7 ~~~wYy~~ 14 (19)
T PF01473_consen 7 NGNWYYFD 14 (19)
T ss_dssp TTEEEEET
T ss_pred CCEEEEeC
Confidence 57899994
No 18
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=31.41 E-value=29 Score=26.97 Aligned_cols=28 Identities=14% Similarity=0.084 Sum_probs=17.6
Q ss_pred CCCCceeEcCChHHHHHHHHhHhcCCCCCC
Q 043175 2 ESLMGFRFQPSNEQIFCLLEKKRLNPHFSH 31 (139)
Q Consensus 2 ~lp~G~rF~PtDeELi~~yL~~k~~g~~~~ 31 (139)
-+||.| |.||++||+.+| +.-+...++|
T Consensus 101 ~~~P~~-~~~~~~~l~~~~-~~ia~~~~~p 128 (284)
T cd00950 101 VVTPYY-NKPSQEGLYAHF-KAIAEATDLP 128 (284)
T ss_pred Eccccc-CCCCHHHHHHHH-HHHHhcCCCC
Confidence 356754 789999999855 4344433343
No 19
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=29.71 E-value=35 Score=26.60 Aligned_cols=19 Identities=11% Similarity=0.240 Sum_probs=14.3
Q ss_pred CCCceeEcCChHHHHHHHHh
Q 043175 3 SLMGFRFQPSNEQIFCLLEK 22 (139)
Q Consensus 3 lp~G~rF~PtDeELi~~yL~ 22 (139)
+||-| |.||++||+.||..
T Consensus 100 ~pP~y-~~~~~~~i~~~~~~ 118 (285)
T TIGR00674 100 VTPYY-NKPTQEGLYQHFKA 118 (285)
T ss_pred cCCcC-CCCCHHHHHHHHHH
Confidence 45554 78999999997754
No 20
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=29.33 E-value=34 Score=26.76 Aligned_cols=27 Identities=11% Similarity=0.066 Sum_probs=17.3
Q ss_pred CCCceeEcCChHHHHHHHHhHhcCCCCCC
Q 043175 3 SLMGFRFQPSNEQIFCLLEKKRLNPHFSH 31 (139)
Q Consensus 3 lp~G~rF~PtDeELi~~yL~~k~~g~~~~ 31 (139)
+||-| |.|++++|+.+| ..-+..-++|
T Consensus 103 ~pP~~-~~~~~~~i~~~~-~~ia~~~~~p 129 (292)
T PRK03170 103 VTPYY-NKPTQEGLYQHF-KAIAEATDLP 129 (292)
T ss_pred CCCcC-CCCCHHHHHHHH-HHHHhcCCCC
Confidence 56655 889999999865 3344333343
No 21
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=26.84 E-value=37 Score=26.65 Aligned_cols=27 Identities=11% Similarity=-0.085 Sum_probs=16.8
Q ss_pred CCCceeEcCChHHHHHHHHhHhcCCCCCC
Q 043175 3 SLMGFRFQPSNEQIFCLLEKKRLNPHFSH 31 (139)
Q Consensus 3 lp~G~rF~PtDeELi~~yL~~k~~g~~~~ 31 (139)
+||- -|.||+++|+.||- .-+...++|
T Consensus 106 ~~P~-y~~~~~~~l~~~f~-~va~a~~lP 132 (293)
T PRK04147 106 VTPF-YYPFSFEEICDYYR-EIIDSADNP 132 (293)
T ss_pred eCCc-CCCCCHHHHHHHHH-HHHHhCCCC
Confidence 3444 48899999998654 344433444
No 22
>PF07131 DUF1382: Protein of unknown function (DUF1382); InterPro: IPR009814 This entry is represented by Bacteriophage lambda, Xis. This entry overlaps with IPR009750, both representing lambda Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Escherichia coli and Bacteriophage lambda-like proteins of around 60 residues in length. The function of this family is unknown.
Probab=26.54 E-value=47 Score=20.22 Aligned_cols=14 Identities=36% Similarity=0.888 Sum_probs=10.2
Q ss_pred CceeEcC----ChHHHHH
Q 043175 5 MGFRFQP----SNEQIFC 18 (139)
Q Consensus 5 ~G~rF~P----tDeELi~ 18 (139)
.|+||.| ||+|+..
T Consensus 22 ~GIRFVpiPv~~dee~~~ 39 (61)
T PF07131_consen 22 IGIRFVPIPVVTDEEFHT 39 (61)
T ss_pred cCceeeccccccHHHHHH
Confidence 4899998 5666543
No 23
>PF09174 Maf1: Maf1 regulator; InterPro: IPR015257 Maf1 is a negative regulator of RNA polymerase III [, ]. It targets the initiation factor TFIIIB []. ; PDB: 3NR5_A.
Probab=23.98 E-value=18 Score=26.69 Aligned_cols=13 Identities=23% Similarity=0.100 Sum_probs=6.8
Q ss_pred eeecCCCCCCCcC
Q 043175 35 KDIDDICGLEPWD 47 (139)
Q Consensus 35 I~~~Dvy~~~P~~ 47 (139)
+.+||||...|..
T Consensus 137 l~~C~iYsy~pd~ 149 (179)
T PF09174_consen 137 LKDCDIYSYNPDS 149 (179)
T ss_dssp GGG-EEEEE---G
T ss_pred ccCceEEEEccCC
Confidence 4579999999843
No 24
>PF12672 DUF3793: Protein of unknown function (DUF3793); InterPro: IPR024523 This family of bacterial proteins is functionally uncharacterised. The proteins in this family contain two conserved sequence motifs: PHE and LGYP.
Probab=23.41 E-value=53 Score=24.13 Aligned_cols=39 Identities=23% Similarity=0.120 Sum_probs=24.1
Q ss_pred ceeEcCChHHHHHHHHhHhcCCCCCCCCeeeecCCC-CCCCcCccc
Q 043175 6 GFRFQPSNEQIFCLLEKKRLNPHFSHHTIKDIDDIC-GLEPWDLAG 50 (139)
Q Consensus 6 G~rF~PtDeELi~~yL~~k~~g~~~~~~~I~~~Dvy-~~~P~~L~~ 50 (139)
|| .+.+-+-+...|+.+......| ||+-|+ +++..|..+
T Consensus 83 GY--~~~~~~~~L~~L~~R~~~~~FP----HEIGiFLGYPleDV~G 122 (176)
T PF12672_consen 83 GY--PDSSLEDCLEHLKKRFESGEFP----HEIGIFLGYPLEDVKG 122 (176)
T ss_pred Cc--CCCCHHHHHHHHHHHhcCCCCC----chhHhccCCCHHHHHH
Confidence 56 5555444445787787655566 467766 666666644
No 25
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=23.34 E-value=50 Score=25.98 Aligned_cols=27 Identities=7% Similarity=0.011 Sum_probs=17.0
Q ss_pred CCCceeEcCChHHHHHHHHhHhcCCCCCC
Q 043175 3 SLMGFRFQPSNEQIFCLLEKKRLNPHFSH 31 (139)
Q Consensus 3 lp~G~rF~PtDeELi~~yL~~k~~g~~~~ 31 (139)
+|| |-|.||+++|+.||-. -+...++|
T Consensus 106 ~pP-~y~~~s~~~i~~~f~~-v~~a~~~p 132 (296)
T TIGR03249 106 LPP-YLINGEQEGLYAHVEA-VCESTDLG 132 (296)
T ss_pred CCC-CCCCCCHHHHHHHHHH-HHhccCCC
Confidence 566 4477999999996643 33333344
No 26
>PF02755 RPEL: RPEL repeat; InterPro: IPR004018 The RPEL repeat is named after four conserved amino acids it contains. The function of the RPEL repeat is unknown however it might be a DNA binding repeat based on the observation that Q9VZY2 from SWISSPROT contains a SAP domain that is also implicated in DNA binding.; PDB: 2YJE_M 2V52_M 2YJF_M 2V51_E.
Probab=22.93 E-value=51 Score=16.52 Aligned_cols=10 Identities=20% Similarity=0.451 Sum_probs=5.8
Q ss_pred EcCChHHHHH
Q 043175 9 FQPSNEQIFC 18 (139)
Q Consensus 9 F~PtDeELi~ 18 (139)
.+|+-+|||.
T Consensus 9 ~RP~~~eLv~ 18 (26)
T PF02755_consen 9 QRPTREELVE 18 (26)
T ss_dssp T---HHHHHH
T ss_pred cCCCHHHHHH
Confidence 4799999987
No 27
>COG2326 Uncharacterized conserved protein [Function unknown]
Probab=22.66 E-value=76 Score=25.15 Aligned_cols=28 Identities=11% Similarity=0.000 Sum_probs=21.9
Q ss_pred CCceeEc----CChHHHHHHHHhHhcCCCCCC
Q 043175 4 LMGFRFQ----PSNEQIFCLLEKKRLNPHFSH 31 (139)
Q Consensus 4 p~G~rF~----PtDeELi~~yL~~k~~g~~~~ 31 (139)
|-|+|-. |||+|+-..||.+-+..-|-.
T Consensus 100 PR~~rvval~aPt~~E~~qwY~qRy~~~lPa~ 131 (270)
T COG2326 100 PRGARVVALPAPTDRERGQWYFQRYVAHLPAA 131 (270)
T ss_pred CceeEEeecCCCChHhhccHHHHHHHHhCCCC
Confidence 5566643 999999999999998866543
No 28
>PF02180 BH4: Bcl-2 homology region 4; InterPro: IPR003093 Apoptosis, or programmed cell death (PCD), is a common and evolutionarily conserved property of all metazoans []. In many biological processes, apoptosis is required to eliminate supernumerary or dangerous (such as pre-cancerous) cells and to promote normal development. Dysregulation of apoptosis can, therefore, contribute to the development of many major diseases including cancer, autoimmunity and neurodegenerative disorders. In most cases, proteins of the caspase family execute the genetic programme that leads to cell death. Bcl-2 proteins are central regulators of caspase activation, and play a key role in cell death by regulating the integrity of the mitochondrial and endoplasmic reticulum (ER) membranes []. At least 20 Bcl-2 proteins have been reported in mammals, and several others have been identified in viruses. Bcl-2 family proteins fall roughly into three subtypes, which either promote cell survival (anti-apoptotic) or trigger cell death (pro-apoptotic). All members contain at least one of four conserved motifs, termed Bcl-2 Homology (BH) domains. Bcl-2 subfamily proteins, which contain at least BH1 and BH2, promote cell survival by inhibiting the adapters needed for the activation of caspases. Pro-apoptotic members potentially exert their effects by displacing the adapters from the pro-survival proteins; these proteins belong either to the Bax subfamily, which contain BH1-BH3, or to the BH3 subfamily, which mostly only feature BH3 []. Thus, the balance between antagonistic family members is believed to play a role in determining cell fate. Members of the wider Bcl-2 family, which also includes Bcl-x, Bcl-w and Mcl-1, are described by their similarity to Bcl-2 protein, a member of the pro-survival Bcl-2 subfamily []. Full-length Bcl-2 proteins feature all four BH domains, seven alpha-helices, and a C-terminal hydrophobic motif that targets the protein to the outer mitochondrial membrane, ER and nuclear envelope. Active cell suicide (apoptosis) is induced by events such as growth factor withdrawal and toxins. It is controlled by regulators, which have either an inhibitory effect on programmed cell death (anti-apoptotic) or block the protective effect of inhibitors (pro-apoptotic) [, ]. Many viruses have found a way of countering defensive apoptosis by encoding their own anti-apoptosis genes preventing their target-cells from dying too soon. All proteins belonging to the Bcl-2 family [] contain either a BH1, BH2, BH3, or BH4 domain. All anti-apoptotic proteins contain BH1 and BH2 domains, some of them contain an additional N-terminal BH4 domain (Bcl-2, Bcl-x(L), Bcl-w), which is never seen in pro-apoptotic proteins, except for Bcl-x(S). On the other hand, all pro-apoptotic proteins contain a BH3 domain (except for Bad) necessary for dimerisation with other proteins of Bcl-2 family and crucial for their killing activity, some of them also contain BH1 and BH2 domains (Bax, Bak). The BH3 domain is also present in some anti-apoptotic protein, such as Bcl-2 or Bcl-x(L). Proteins that are known to contain these domains include vertebrate Bcl-2 (alpha and beta isoforms) and Bcl-x (isoforms (Bcl-x(L) and Bcl-x(S)); mammalian proteins Bax and Bak; mouse protein Bid; Xenopus laevis proteins Xr1 and Xr11; human induced myeloid leukemia cell differentiation protein MCL1 and Caenorhabditis elegans protein ced-9.; GO: 0042981 regulation of apoptosis; PDB: 1AF3_A 2PON_B 1YSN_A 3PL7_B 3R85_A 2O2N_A 2P1L_C 1R2G_A 2O1Y_A 1BXL_A ....
Probab=22.41 E-value=80 Score=16.10 Aligned_cols=19 Identities=11% Similarity=-0.024 Sum_probs=14.3
Q ss_pred ChHHHHHHHHhHhcCCCCC
Q 043175 12 SNEQIFCLLEKKRLNPHFS 30 (139)
Q Consensus 12 tDeELi~~yL~~k~~g~~~ 30 (139)
+-.|||.+|+.-|+...-.
T Consensus 4 ~nR~lV~~yi~yKLsQrgy 22 (27)
T PF02180_consen 4 DNRELVEDYISYKLSQRGY 22 (27)
T ss_dssp HHHHHHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHHhhhcCC
Confidence 4579999999888765443
No 29
>PRK14390 hypothetical protein; Provisional
Probab=22.32 E-value=39 Score=20.79 Aligned_cols=43 Identities=12% Similarity=-0.072 Sum_probs=22.3
Q ss_pred CCCceeEcCChHHHHHHHHhHhcCCCCCCCCeeeecCCCCCCCcCc
Q 043175 3 SLMGFRFQPSNEQIFCLLEKKRLNPHFSHHTIKDIDDICGLEPWDL 48 (139)
Q Consensus 3 lp~G~rF~PtDeELi~~yL~~k~~g~~~~~~~I~~~Dvy~~~P~~L 48 (139)
+|+-+||.||=-|=...=+.+. ..+........-|..+|||--
T Consensus 13 ~~~~CRf~PTCS~Ya~~Ai~~~---G~~kG~~l~~~RilRC~P~~~ 55 (63)
T PRK14390 13 FGPRCRFIPSCSSYGYEAITRH---GPWKGGWLTLRRLSRCHPLTP 55 (63)
T ss_pred CCCCCCcCccHHHHHHHHHHHh---CcHHHHHHHHHHHhcCCCCCC
Confidence 6788999999655333222211 112222333345556777643
No 30
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=22.01 E-value=55 Score=25.23 Aligned_cols=27 Identities=15% Similarity=-0.036 Sum_probs=16.6
Q ss_pred CCCceeEcCChHHHHHHHHhHhcCCCCCC
Q 043175 3 SLMGFRFQPSNEQIFCLLEKKRLNPHFSH 31 (139)
Q Consensus 3 lp~G~rF~PtDeELi~~yL~~k~~g~~~~ 31 (139)
+||- .|.||+++++.+|.. -+...++|
T Consensus 99 ~pP~-y~~~~~~~~~~~~~~-ia~~~~~p 125 (281)
T cd00408 99 VPPY-YNKPSQEGIVAHFKA-VADASDLP 125 (281)
T ss_pred CCCc-CCCCCHHHHHHHHHH-HHhcCCCC
Confidence 4554 467999999996543 44433344
No 31
>PF02375 JmjN: jmjN domain; InterPro: IPR003349 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with JmjC (see IPR003347 from INTERPRO).; PDB: 2XML_A 2W2I_C 3DXT_A 3DXU_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=22.00 E-value=45 Score=17.84 Aligned_cols=11 Identities=27% Similarity=0.304 Sum_probs=5.2
Q ss_pred eEcCChHHHHH
Q 043175 8 RFQPSNEQIFC 18 (139)
Q Consensus 8 rF~PtDeELi~ 18 (139)
-|.||.||.-+
T Consensus 2 vf~Pt~eEF~d 12 (34)
T PF02375_consen 2 VFYPTMEEFKD 12 (34)
T ss_dssp EE---HHHHS-
T ss_pred cccCCHHHHhC
Confidence 48999999754
No 32
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=21.59 E-value=52 Score=26.01 Aligned_cols=27 Identities=7% Similarity=-0.083 Sum_probs=17.3
Q ss_pred CCCceeEcCChHHHHHHHHhHhcCCCCCC
Q 043175 3 SLMGFRFQPSNEQIFCLLEKKRLNPHFSH 31 (139)
Q Consensus 3 lp~G~rF~PtDeELi~~yL~~k~~g~~~~ 31 (139)
+|| +.|.||+++|+.||-. -+...++|
T Consensus 108 ~pP-~y~~~~~~~i~~~f~~-va~~~~lp 134 (303)
T PRK03620 108 LPP-YLTEAPQEGLAAHVEA-VCKSTDLG 134 (303)
T ss_pred CCC-CCCCCCHHHHHHHHHH-HHHhCCCC
Confidence 455 5678999999997643 33333444
No 33
>COG4802 FtrB Ferredoxin-thioredoxin reductase, catalytic subunit [Energy production and conversion]
Probab=20.08 E-value=85 Score=21.31 Aligned_cols=31 Identities=10% Similarity=0.146 Sum_probs=18.1
Q ss_pred CceeEcCChHHHHHHHHhHhcC-----CCC-CCCCeee
Q 043175 5 MGFRFQPSNEQIFCLLEKKRLN-----PHF-SHHTIKD 36 (139)
Q Consensus 5 ~G~rF~PtDeELi~~yL~~k~~-----g~~-~~~~~I~ 36 (139)
.|++|+|.- |++...|+-.+. |.+ .|++++.
T Consensus 20 sG~~lnpD~-e~~~~v~~gL~~~ke~yG~~~CPCRl~~ 56 (110)
T COG4802 20 SGYRLNPDR-EFTAEVLRGLASNKERYGYPSCPCRLVT 56 (110)
T ss_pred cCceeCCCH-HHHHHHHHHHHHhHHHhCCCCCCeeccc
Confidence 589999965 444445554443 455 4555553
Done!