Query 043175
Match_columns 139
No_of_seqs 113 out of 857
Neff 7.6
Searched_HMMs 29240
Date Tue Mar 26 00:07:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043175.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043175hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 2.3E-55 7.7E-60 322.0 12.1 133 1-136 13-145 (174)
2 1ut7_A No apical meristem prot 100.0 8E-55 2.7E-59 318.7 11.9 132 1-135 15-146 (171)
3 1cmb_A Met APO-repressor; DNA- 59.4 6.9 0.00024 24.9 2.6 39 10-52 50-88 (104)
4 1ldd_A APC2WHB, anaphase promo 52.5 5.2 0.00018 24.5 1.1 27 3-30 36-63 (74)
5 4dox_A Coat protein; all helix 40.2 13 0.00043 27.7 1.8 24 3-26 155-178 (226)
6 3nr5_A MAF1, repressor of RNA 39.3 8 0.00028 27.3 0.6 14 35-48 119-132 (164)
7 2oh5_A Polyhedrin, C-polyhedri 37.6 1.1E+02 0.0036 21.7 6.2 27 84-110 141-168 (248)
8 2ehh_A DHDPS, dihydrodipicolin 31.3 15 0.00052 27.8 1.0 18 3-21 102-119 (294)
9 2ojp_A DHDPS, dihydrodipicolin 30.8 16 0.00053 27.7 1.0 18 3-21 103-120 (292)
10 1f6k_A N-acetylneuraminate lya 30.7 16 0.00054 27.7 1.0 19 3-22 106-124 (293)
11 3cpr_A Dihydrodipicolinate syn 30.3 14 0.00049 28.1 0.7 18 3-21 118-135 (304)
12 3fkr_A L-2-keto-3-deoxyarabona 30.0 20 0.00069 27.4 1.5 20 3-22 110-131 (309)
13 2yxg_A DHDPS, dihydrodipicolin 29.9 17 0.00056 27.5 1.0 18 3-21 102-119 (289)
14 2wkj_A N-acetylneuraminate lya 29.7 17 0.00057 27.7 1.0 18 3-21 113-130 (303)
15 2nuw_A 2-keto-3-deoxygluconate 29.5 20 0.00068 27.0 1.4 19 3-22 98-117 (288)
16 3dz1_A Dihydrodipicolinate syn 29.3 17 0.00058 27.8 1.0 18 3-22 109-126 (313)
17 2vc6_A MOSA, dihydrodipicolina 29.1 17 0.00059 27.4 1.0 18 3-21 102-119 (292)
18 2rfg_A Dihydrodipicolinate syn 28.9 18 0.00063 27.4 1.1 18 3-21 102-119 (297)
19 3b4u_A Dihydrodipicolinate syn 28.6 21 0.00071 27.0 1.4 18 3-21 105-123 (294)
20 1o5k_A DHDPS, dihydrodipicolin 28.6 18 0.00061 27.6 1.0 27 3-31 114-140 (306)
21 3d0c_A Dihydrodipicolinate syn 28.0 22 0.00075 27.2 1.4 18 3-21 113-130 (314)
22 2v9d_A YAGE; dihydrodipicolini 27.5 19 0.00065 28.0 1.0 19 3-22 133-151 (343)
23 1xky_A Dihydrodipicolinate syn 27.1 20 0.00068 27.3 1.0 18 3-21 114-131 (301)
24 2r91_A 2-keto-3-deoxy-(6-phosp 27.0 23 0.00077 26.7 1.3 19 3-22 97-116 (286)
25 3si9_A DHDPS, dihydrodipicolin 26.9 20 0.00068 27.5 1.0 18 3-21 124-141 (315)
26 3daq_A DHDPS, dihydrodipicolin 26.5 21 0.00071 27.0 1.0 18 3-21 104-121 (292)
27 1w3i_A EDA, 2-keto-3-deoxy glu 26.3 22 0.00075 26.9 1.1 18 3-21 98-116 (293)
28 3e96_A Dihydrodipicolinate syn 26.1 25 0.00085 26.9 1.4 19 3-22 113-131 (316)
29 3h5d_A DHDPS, dihydrodipicolin 25.8 21 0.00073 27.2 1.0 18 3-21 110-127 (311)
30 2r8w_A AGR_C_1641P; APC7498, d 25.6 25 0.00086 27.1 1.4 18 3-21 136-153 (332)
31 3m5v_A DHDPS, dihydrodipicolin 25.6 22 0.00075 27.0 1.0 18 3-21 110-127 (301)
32 3a5f_A Dihydrodipicolinate syn 25.0 17 0.00057 27.5 0.2 18 3-21 103-120 (291)
33 3na8_A Putative dihydrodipicol 24.5 27 0.00093 26.7 1.4 18 3-21 126-143 (315)
34 3l21_A DHDPS, dihydrodipicolin 24.3 24 0.00082 26.9 1.0 27 3-31 117-143 (304)
35 4dpp_A DHDPS 2, dihydrodipicol 24.0 22 0.00075 28.1 0.7 18 3-21 161-178 (360)
36 3tak_A DHDPS, dihydrodipicolin 23.9 22 0.00076 26.8 0.7 18 3-21 103-120 (291)
37 3flu_A DHDPS, dihydrodipicolin 23.8 25 0.00085 26.6 1.0 18 3-21 109-126 (297)
38 3qze_A DHDPS, dihydrodipicolin 23.3 26 0.00087 26.9 1.0 19 3-22 125-143 (314)
39 3pp4_P B-lymphocyte antigen CD 20.7 41 0.0014 16.1 1.1 12 39-50 1-12 (25)
40 2pcq_A Putative dihydrodipicol 20.4 21 0.00073 26.8 0.0 18 3-21 95-113 (283)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=2.3e-55 Score=321.98 Aligned_cols=133 Identities=31% Similarity=0.573 Sum_probs=120.6
Q ss_pred CCCCCceeEcCChHHHHHHHHhHhcCCCCCCCCeeeecCCCCCCCcCccccCccCCCCceEEEEeccccccCCCCcceee
Q 043175 1 MESLMGFRFQPSNEQIFCLLEKKRLNPHFSHHTIKDIDDICGLEPWDLAGASKTESEDRVCYFFCKPCYKYKKSTRAHRR 80 (139)
Q Consensus 1 ~~lp~G~rF~PtDeELi~~yL~~k~~g~~~~~~~I~~~Dvy~~~P~~L~~~~~~~~~~~~~yFF~~~~~~~~~~~r~~R~ 80 (139)
+.|||||||+|||||||.+||++|+.|.+++.++|.++|||.+|||+||+.+. .++.+|||||++.+|+++|.|++|+
T Consensus 13 ~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~--~g~~ewYFFs~r~~ky~~g~R~nR~ 90 (174)
T 3ulx_A 13 LNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERAL--FGAREWYFFTPRDRKYPNGSRPNRA 90 (174)
T ss_dssp TTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCS--SCSSEEEEEEECCC-----CCSCEE
T ss_pred cCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhc--cCCceEEEEeccccccCCCCCceee
Confidence 47999999999999999999999999999999999999999999999998864 3578999999999999999999999
Q ss_pred cccceeEecCCCeEEecCCceEeeeEEEEEEeeCCCCCCCCcCeEEEEEEeCCCCC
Q 043175 81 TNAGYWKVTGRGSKIKTRNGLSGTKKILTFQYHGPASKKAKIGWVMHEYHVNDDPS 136 (139)
Q Consensus 81 ~~~G~W~~~g~~~~i~~~~~~~G~k~~l~f~~~~~~~~~~kt~W~M~EY~l~~~~~ 136 (139)
+++|+||++|++++|.+++.+||+|++|+| |.++++++.+|+|+||||+|.++..
T Consensus 91 t~~G~WkatG~dk~I~~~g~~vG~KktLvF-y~g~~p~g~kT~WvMhEY~L~~~~~ 145 (174)
T 3ulx_A 91 AGNGYWKATGADKPVAPRGRTLGIKKALVF-YAGKAPRGVKTDWIMHEYRLADAGR 145 (174)
T ss_dssp ETTEEEEECSCCEEECCSSSCCEEEEEEEE-EESSTTSCEEEEEEEEEEEECSCC-
T ss_pred cCCceEccCCCCcEEeeCCcEEEEEEEEEE-ecCCCCCCCcCCeEEEEEEeCCCCC
Confidence 999999999999999988899999999999 9999999999999999999998753
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=8e-55 Score=318.67 Aligned_cols=132 Identities=30% Similarity=0.544 Sum_probs=118.7
Q ss_pred CCCCCceeEcCChHHHHHHHHhHhcCCCCCCCCeeeecCCCCCCCcCccccCccCCCCceEEEEeccccccCCCCcceee
Q 043175 1 MESLMGFRFQPSNEQIFCLLEKKRLNPHFSHHTIKDIDDICGLEPWDLAGASKTESEDRVCYFFCKPCYKYKKSTRAHRR 80 (139)
Q Consensus 1 ~~lp~G~rF~PtDeELi~~yL~~k~~g~~~~~~~I~~~Dvy~~~P~~L~~~~~~~~~~~~~yFF~~~~~~~~~~~r~~R~ 80 (139)
+.|||||||+|||||||.+||++|+.|.+++.++|+++|||.+|||+||+... .++.+||||+++.+++++|.|++|+
T Consensus 15 ~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~--~g~~ewyFFs~r~~k~~~g~R~~R~ 92 (171)
T 1ut7_A 15 LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKAL--FGEKEWYFFSPRDRKYPNGSRPNRV 92 (171)
T ss_dssp SCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSS--SCSSEEEEEEECCC-------CCEE
T ss_pred cCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhh--cCCccEEEEeccccccCCCCccccc
Confidence 47999999999999999999999999999999999999999999999998863 4688999999999999999999999
Q ss_pred cccceeEecCCCeEEecCCceEeeeEEEEEEeeCCCCCCCCcCeEEEEEEeCCCC
Q 043175 81 TNAGYWKVTGRGSKIKTRNGLSGTKKILTFQYHGPASKKAKIGWVMHEYHVNDDP 135 (139)
Q Consensus 81 ~~~G~W~~~g~~~~i~~~~~~~G~k~~l~f~~~~~~~~~~kt~W~M~EY~l~~~~ 135 (139)
+++|+||++|++++|.+++.+||+|++|+| |.++++++.+|+|+||||+|.+++
T Consensus 93 t~~G~Wk~tG~~k~I~~~~~~vG~KktLvF-y~g~~p~g~kT~WvMhEY~l~~~~ 146 (171)
T 1ut7_A 93 AGSGYWKATGTDKIISTEGQRVGIKKALVF-YIGKAPKGTKTNWIMHEYRLIEPS 146 (171)
T ss_dssp ETTEEEEEEEEEEEEEETTEEEEEEEEEEE-EESSTTSCEEEEEEEEEEEECCCC
T ss_pred CCCCEEeccCCCceEEecCcEEEEEEEEEE-EcCcCCCCCcCCeEEEEEEcCCCc
Confidence 999999999999999998899999999999 999999999999999999999874
No 3
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=59.41 E-value=6.9 Score=24.92 Aligned_cols=39 Identities=10% Similarity=0.104 Sum_probs=32.1
Q ss_pred cCChHHHHHHHHhHhcCCCCCCCCeeeecCCCCCCCcCccccC
Q 043175 10 QPSNEQIFCLLEKKRLNPHFSHHTIKDIDDICGLEPWDLAGAS 52 (139)
Q Consensus 10 ~PtDeELi~~yL~~k~~g~~~~~~~I~~~Dvy~~~P~~L~~~~ 52 (139)
|-|..||++.-...-..|+|+|. +.|+-...|.++|...
T Consensus 50 HATNSELLCEAFLHA~TGQPLP~----D~Dl~Kd~~d~iP~~a 88 (104)
T 1cmb_A 50 HATNSELLCEAFLHAFTGQPLPD----DADLRKERSDEIPEAA 88 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCCCC----GGGGBTTSCSCSCHHH
T ss_pred hcccHHHHHHHHHHHhcCCCCCC----chhhhhcCCccchHHH
Confidence 45778888877777889999996 7888888999998764
No 4
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=52.45 E-value=5.2 Score=24.54 Aligned_cols=27 Identities=4% Similarity=-0.091 Sum_probs=22.1
Q ss_pred CCCceeEcC-ChHHHHHHHHhHhcCCCCC
Q 043175 3 SLMGFRFQP-SNEQIFCLLEKKRLNPHFS 30 (139)
Q Consensus 3 lp~G~rF~P-tDeELi~~yL~~k~~g~~~ 30 (139)
.|.|+.|.. |++||-. ||..++..+.+
T Consensus 36 ~~~~~~~~~it~~eL~~-fL~~~v~e~kL 63 (74)
T 1ldd_A 36 VPKDWGYNRITLQQLEG-YLNTLADEGRL 63 (74)
T ss_dssp SCGGGCCTTCCHHHHHH-HHHHHHHTTSE
T ss_pred CCCCCCCCcCCHHHHHH-HHHHHHhCCeE
Confidence 367889998 8899877 89999987754
No 5
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=40.17 E-value=13 Score=27.68 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=16.9
Q ss_pred CCCceeEcCChHHHHHHHHhHhcC
Q 043175 3 SLMGFRFQPSNEQIFCLLEKKRLN 26 (139)
Q Consensus 3 lp~G~rF~PtDeELi~~yL~~k~~ 26 (139)
-+-|..+.||++|+|.+=..+++.
T Consensus 155 P~~GLiR~PT~~E~iA~~t~K~ia 178 (226)
T 4dox_A 155 PPSGLTRSPTQEERIANATNKQVH 178 (226)
T ss_dssp CTTCCSSCCCHHHHHHHHTC----
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHH
Confidence 345899999999999987665543
No 6
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=39.29 E-value=8 Score=27.32 Aligned_cols=14 Identities=21% Similarity=-0.102 Sum_probs=11.1
Q ss_pred eeecCCCCCCCcCc
Q 043175 35 KDIDDICGLEPWDL 48 (139)
Q Consensus 35 I~~~Dvy~~~P~~L 48 (139)
+.++|||+..|..-
T Consensus 119 l~dC~IYsY~Pd~~ 132 (164)
T 3nr5_A 119 LAECDIYSYNPDLD 132 (164)
T ss_dssp GGGCEEEEECCCGG
T ss_pred ccCCeEEEEcCCCC
Confidence 46799999999843
No 7
>2oh5_A Polyhedrin, C-polyhedrin; beta barrel, intracellular crystal, nucleotide binding, STRU protein, RNA binding protein; HET: GTP ATP CTP; 1.98A {Bombyx mori cypovirus 1} PDB: 2oh6_A* 2oh7_A*
Probab=37.59 E-value=1.1e+02 Score=21.73 Aligned_cols=27 Identities=26% Similarity=0.413 Sum_probs=22.2
Q ss_pred ceeEecCC-CeEEecCCceEeeeEEEEE
Q 043175 84 GYWKVTGR-GSKIKTRNGLSGTKKILTF 110 (139)
Q Consensus 84 G~W~~~g~-~~~i~~~~~~~G~k~~l~f 110 (139)
--|.++|- -+.|..+|+++|+...|..
T Consensus 141 hpweatgikyrki~~dgeivgyshyfel 168 (248)
T 2oh5_A 141 HPWEATGIKYRKIKRDGEIVGYSHYFEL 168 (248)
T ss_dssp CSCBCCGGGCEEEEETTEEEEEEEEEEC
T ss_pred CCccccCceEEEeeecceEeeeeeeeec
Confidence 45999885 5778889999999998776
No 8
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=31.30 E-value=15 Score=27.76 Aligned_cols=18 Identities=6% Similarity=0.120 Sum_probs=14.1
Q ss_pred CCCceeEcCChHHHHHHHH
Q 043175 3 SLMGFRFQPSNEQIFCLLE 21 (139)
Q Consensus 3 lp~G~rF~PtDeELi~~yL 21 (139)
+||- .|.||+++|+.||-
T Consensus 102 ~~P~-y~~~s~~~l~~~f~ 119 (294)
T 2ehh_A 102 VVPY-YNKPTQRGLYEHFK 119 (294)
T ss_dssp ECCC-SSCCCHHHHHHHHH
T ss_pred CCCC-CCCCCHHHHHHHHH
Confidence 4564 47899999999875
No 9
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=30.84 E-value=16 Score=27.66 Aligned_cols=18 Identities=17% Similarity=0.146 Sum_probs=14.0
Q ss_pred CCCceeEcCChHHHHHHHH
Q 043175 3 SLMGFRFQPSNEQIFCLLE 21 (139)
Q Consensus 3 lp~G~rF~PtDeELi~~yL 21 (139)
+||- .|.||+++|+.||-
T Consensus 103 ~~P~-y~~~s~~~l~~~f~ 120 (292)
T 2ojp_A 103 VTPY-YNRPSQEGLYQHFK 120 (292)
T ss_dssp ECCC-SSCCCHHHHHHHHH
T ss_pred CCCC-CCCCCHHHHHHHHH
Confidence 4564 47899999999774
No 10
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=30.73 E-value=16 Score=27.66 Aligned_cols=19 Identities=11% Similarity=-0.110 Sum_probs=14.5
Q ss_pred CCCceeEcCChHHHHHHHHh
Q 043175 3 SLMGFRFQPSNEQIFCLLEK 22 (139)
Q Consensus 3 lp~G~rF~PtDeELi~~yL~ 22 (139)
+||- .|.||+++|+.||-.
T Consensus 106 ~~P~-y~~~~~~~l~~~f~~ 124 (293)
T 1f6k_A 106 VTPF-YYKFSFPEIKHYYDT 124 (293)
T ss_dssp ECCC-SSCCCHHHHHHHHHH
T ss_pred CCCC-CCCCCHHHHHHHHHH
Confidence 4564 488999999998753
No 11
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=30.35 E-value=14 Score=28.08 Aligned_cols=18 Identities=17% Similarity=0.279 Sum_probs=14.4
Q ss_pred CCCceeEcCChHHHHHHHH
Q 043175 3 SLMGFRFQPSNEQIFCLLE 21 (139)
Q Consensus 3 lp~G~rF~PtDeELi~~yL 21 (139)
+|| |.+.||+++|+.||-
T Consensus 118 ~~P-~y~~~~~~~l~~~f~ 135 (304)
T 3cpr_A 118 VTP-YYSKPSQEGLLAHFG 135 (304)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHHH
Confidence 566 448899999999874
No 12
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=30.02 E-value=20 Score=27.36 Aligned_cols=20 Identities=20% Similarity=0.205 Sum_probs=14.7
Q ss_pred CCCcee--EcCChHHHHHHHHh
Q 043175 3 SLMGFR--FQPSNEQIFCLLEK 22 (139)
Q Consensus 3 lp~G~r--F~PtDeELi~~yL~ 22 (139)
+||=|- |.||+++|+.||-.
T Consensus 110 ~~Pyy~~~~~~s~~~l~~~f~~ 131 (309)
T 3fkr_A 110 MPPYHGATFRVPEAQIFEFYAR 131 (309)
T ss_dssp CCSCBTTTBCCCHHHHHHHHHH
T ss_pred cCCCCccCCCCCHHHHHHHHHH
Confidence 566332 78999999997753
No 13
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=29.90 E-value=17 Score=27.47 Aligned_cols=18 Identities=11% Similarity=-0.079 Sum_probs=14.1
Q ss_pred CCCceeEcCChHHHHHHHH
Q 043175 3 SLMGFRFQPSNEQIFCLLE 21 (139)
Q Consensus 3 lp~G~rF~PtDeELi~~yL 21 (139)
+||- .|.||+++|+.||-
T Consensus 102 ~~P~-y~~~s~~~l~~~f~ 119 (289)
T 2yxg_A 102 ITPY-YNKPTQEGLRKHFG 119 (289)
T ss_dssp ECCC-SSCCCHHHHHHHHH
T ss_pred CCCC-CCCCCHHHHHHHHH
Confidence 4664 47899999999874
No 14
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=29.68 E-value=17 Score=27.70 Aligned_cols=18 Identities=11% Similarity=-0.254 Sum_probs=14.1
Q ss_pred CCCceeEcCChHHHHHHHH
Q 043175 3 SLMGFRFQPSNEQIFCLLE 21 (139)
Q Consensus 3 lp~G~rF~PtDeELi~~yL 21 (139)
+||- .|.||+++|+.||-
T Consensus 113 ~~P~-y~~~s~~~l~~~f~ 130 (303)
T 2wkj_A 113 VTPF-YYPFSFEEHCDHYR 130 (303)
T ss_dssp ECCC-SSCCCHHHHHHHHH
T ss_pred cCCC-CCCCCHHHHHHHHH
Confidence 4664 47899999999875
No 15
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=29.48 E-value=20 Score=27.05 Aligned_cols=19 Identities=11% Similarity=-0.061 Sum_probs=14.4
Q ss_pred CCCceeEc-CChHHHHHHHHh
Q 043175 3 SLMGFRFQ-PSNEQIFCLLEK 22 (139)
Q Consensus 3 lp~G~rF~-PtDeELi~~yL~ 22 (139)
+||- .|. ||+++|+.||-.
T Consensus 98 ~~P~-y~~~~s~~~l~~~f~~ 117 (288)
T 2nuw_A 98 HSPY-YFPRLPEKFLAKYYEE 117 (288)
T ss_dssp CCCC-SSCSCCHHHHHHHHHH
T ss_pred cCCc-CCCCCCHHHHHHHHHH
Confidence 4664 477 999999998753
No 16
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=29.31 E-value=17 Score=27.82 Aligned_cols=18 Identities=17% Similarity=0.089 Sum_probs=13.7
Q ss_pred CCCceeEcCChHHHHHHHHh
Q 043175 3 SLMGFRFQPSNEQIFCLLEK 22 (139)
Q Consensus 3 lp~G~rF~PtDeELi~~yL~ 22 (139)
+||- |.||+++|+.||-.
T Consensus 109 ~~P~--~~~s~~~l~~~f~~ 126 (313)
T 3dz1_A 109 APPP--SLRTDEQITTYFRQ 126 (313)
T ss_dssp CCCT--TCCSHHHHHHHHHH
T ss_pred CCCC--CCCCHHHHHHHHHH
Confidence 5664 55999999997753
No 17
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=29.13 E-value=17 Score=27.40 Aligned_cols=18 Identities=17% Similarity=0.309 Sum_probs=14.2
Q ss_pred CCCceeEcCChHHHHHHHH
Q 043175 3 SLMGFRFQPSNEQIFCLLE 21 (139)
Q Consensus 3 lp~G~rF~PtDeELi~~yL 21 (139)
+|| |.|.||+++|+.||-
T Consensus 102 ~~P-~y~~~s~~~l~~~f~ 119 (292)
T 2vc6_A 102 VSP-YYNKPTQEGIYQHFK 119 (292)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred cCC-CCCCCCHHHHHHHHH
Confidence 456 448899999999875
No 18
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=28.91 E-value=18 Score=27.39 Aligned_cols=18 Identities=17% Similarity=0.128 Sum_probs=14.1
Q ss_pred CCCceeEcCChHHHHHHHH
Q 043175 3 SLMGFRFQPSNEQIFCLLE 21 (139)
Q Consensus 3 lp~G~rF~PtDeELi~~yL 21 (139)
+||- .|.||+++|+.||-
T Consensus 102 ~~P~-y~~~s~~~l~~~f~ 119 (297)
T 2rfg_A 102 VAGY-YNRPSQEGLYQHFK 119 (297)
T ss_dssp CCCT-TTCCCHHHHHHHHH
T ss_pred cCCC-CCCCCHHHHHHHHH
Confidence 5664 47899999999874
No 19
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=28.64 E-value=21 Score=27.01 Aligned_cols=18 Identities=17% Similarity=0.364 Sum_probs=13.9
Q ss_pred CCCceeEc-CChHHHHHHHH
Q 043175 3 SLMGFRFQ-PSNEQIFCLLE 21 (139)
Q Consensus 3 lp~G~rF~-PtDeELi~~yL 21 (139)
+||- .|. ||+++|+.||-
T Consensus 105 ~~P~-y~~~~s~~~l~~~f~ 123 (294)
T 3b4u_A 105 APPS-YFKNVSDDGLFAWFS 123 (294)
T ss_dssp CCCC-SSCSCCHHHHHHHHH
T ss_pred cCCc-CCCCCCHHHHHHHHH
Confidence 4564 477 99999999875
No 20
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=28.57 E-value=18 Score=27.57 Aligned_cols=27 Identities=7% Similarity=-0.118 Sum_probs=17.4
Q ss_pred CCCceeEcCChHHHHHHHHhHhcCCCCCC
Q 043175 3 SLMGFRFQPSNEQIFCLLEKKRLNPHFSH 31 (139)
Q Consensus 3 lp~G~rF~PtDeELi~~yL~~k~~g~~~~ 31 (139)
+||- .|.||+++|+.||-. -+...++|
T Consensus 114 ~~P~-y~~~s~~~l~~~f~~-va~a~~lP 140 (306)
T 1o5k_A 114 VTPY-YNKPTQEGLYQHYKY-ISERTDLG 140 (306)
T ss_dssp ECCC-SSCCCHHHHHHHHHH-HHTTCSSC
T ss_pred CCCC-CCCCCHHHHHHHHHH-HHHhCCCC
Confidence 4664 478999999997743 33333444
No 21
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=28.04 E-value=22 Score=27.21 Aligned_cols=18 Identities=0% Similarity=-0.285 Sum_probs=14.1
Q ss_pred CCCceeEcCChHHHHHHHH
Q 043175 3 SLMGFRFQPSNEQIFCLLE 21 (139)
Q Consensus 3 lp~G~rF~PtDeELi~~yL 21 (139)
+||- .|.||+++|+.||-
T Consensus 113 ~~P~-y~~~s~~~l~~~f~ 130 (314)
T 3d0c_A 113 HQPV-HPYITDAGAVEYYR 130 (314)
T ss_dssp CCCC-CSCCCHHHHHHHHH
T ss_pred CCCC-CCCCCHHHHHHHHH
Confidence 4664 48899999999874
No 22
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=27.53 E-value=19 Score=27.99 Aligned_cols=19 Identities=11% Similarity=0.051 Sum_probs=14.5
Q ss_pred CCCceeEcCChHHHHHHHHh
Q 043175 3 SLMGFRFQPSNEQIFCLLEK 22 (139)
Q Consensus 3 lp~G~rF~PtDeELi~~yL~ 22 (139)
+||- .|.||+++|+.||-.
T Consensus 133 ~~P~-Y~~~s~~~l~~~f~~ 151 (343)
T 2v9d_A 133 INPY-YWKVSEANLIRYFEQ 151 (343)
T ss_dssp ECCS-SSCCCHHHHHHHHHH
T ss_pred CCCC-CCCCCHHHHHHHHHH
Confidence 4664 478999999998753
No 23
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=27.05 E-value=20 Score=27.25 Aligned_cols=18 Identities=17% Similarity=0.311 Sum_probs=14.1
Q ss_pred CCCceeEcCChHHHHHHHH
Q 043175 3 SLMGFRFQPSNEQIFCLLE 21 (139)
Q Consensus 3 lp~G~rF~PtDeELi~~yL 21 (139)
+|| |.|.||+++|+.||-
T Consensus 114 ~~P-~y~~~s~~~l~~~f~ 131 (301)
T 1xky_A 114 VAP-YYNKPSQEGMYQHFK 131 (301)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred cCC-CCCCCCHHHHHHHHH
Confidence 466 447899999999774
No 24
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=27.05 E-value=23 Score=26.66 Aligned_cols=19 Identities=21% Similarity=0.121 Sum_probs=14.4
Q ss_pred CCCceeEc-CChHHHHHHHHh
Q 043175 3 SLMGFRFQ-PSNEQIFCLLEK 22 (139)
Q Consensus 3 lp~G~rF~-PtDeELi~~yL~ 22 (139)
+||-| |. ||+++|+.||-.
T Consensus 97 ~~P~y-~~~~s~~~l~~~f~~ 116 (286)
T 2r91_A 97 LPPYY-FPRLSERQIAKYFRD 116 (286)
T ss_dssp CCSCS-STTCCHHHHHHHHHH
T ss_pred cCCcC-CCCCCHHHHHHHHHH
Confidence 46644 77 999999998753
No 25
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=26.87 E-value=20 Score=27.50 Aligned_cols=18 Identities=6% Similarity=0.080 Sum_probs=14.0
Q ss_pred CCCceeEcCChHHHHHHHH
Q 043175 3 SLMGFRFQPSNEQIFCLLE 21 (139)
Q Consensus 3 lp~G~rF~PtDeELi~~yL 21 (139)
+||- .|.||+++|+.||-
T Consensus 124 ~~P~-y~~~~~~~l~~~f~ 141 (315)
T 3si9_A 124 VTPY-YNRPNQRGLYTHFS 141 (315)
T ss_dssp ECCC-SSCCCHHHHHHHHH
T ss_pred CCCC-CCCCCHHHHHHHHH
Confidence 4564 47899999999774
No 26
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=26.48 E-value=21 Score=27.00 Aligned_cols=18 Identities=6% Similarity=0.023 Sum_probs=13.8
Q ss_pred CCCceeEcCChHHHHHHHH
Q 043175 3 SLMGFRFQPSNEQIFCLLE 21 (139)
Q Consensus 3 lp~G~rF~PtDeELi~~yL 21 (139)
+|| |.|.||+++|+.||-
T Consensus 104 ~~P-~y~~~~~~~l~~~f~ 121 (292)
T 3daq_A 104 ITP-YYNKTNQRGLVKHFE 121 (292)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHHH
Confidence 455 457899999999774
No 27
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=26.35 E-value=22 Score=26.86 Aligned_cols=18 Identities=6% Similarity=0.002 Sum_probs=13.9
Q ss_pred CCCceeEc-CChHHHHHHHH
Q 043175 3 SLMGFRFQ-PSNEQIFCLLE 21 (139)
Q Consensus 3 lp~G~rF~-PtDeELi~~yL 21 (139)
+||- .|. ||+++|+.||-
T Consensus 98 ~~P~-y~~~~s~~~l~~~f~ 116 (293)
T 1w3i_A 98 YAPY-YYPRMSEKHLVKYFK 116 (293)
T ss_dssp ECCC-SCSSCCHHHHHHHHH
T ss_pred cCCC-CCCCCCHHHHHHHHH
Confidence 4564 477 99999999874
No 28
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=26.14 E-value=25 Score=26.89 Aligned_cols=19 Identities=0% Similarity=-0.010 Sum_probs=14.5
Q ss_pred CCCceeEcCChHHHHHHHHh
Q 043175 3 SLMGFRFQPSNEQIFCLLEK 22 (139)
Q Consensus 3 lp~G~rF~PtDeELi~~yL~ 22 (139)
+||-| +.||+++|+.||-.
T Consensus 113 ~~P~y-~~~s~~~l~~~f~~ 131 (316)
T 3e96_A 113 HMPIH-PYVTAGGVYAYFRD 131 (316)
T ss_dssp CCCCC-SCCCHHHHHHHHHH
T ss_pred cCCCC-CCCCHHHHHHHHHH
Confidence 46654 78999999997753
No 29
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=25.84 E-value=21 Score=27.25 Aligned_cols=18 Identities=17% Similarity=0.351 Sum_probs=13.7
Q ss_pred CCCceeEcCChHHHHHHHH
Q 043175 3 SLMGFRFQPSNEQIFCLLE 21 (139)
Q Consensus 3 lp~G~rF~PtDeELi~~yL 21 (139)
+|| +.|.||+++|+.||-
T Consensus 110 ~~P-~y~~~s~~~l~~~f~ 127 (311)
T 3h5d_A 110 IVP-YYNKPSQEGMYQHFK 127 (311)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred cCC-CCCCCCHHHHHHHHH
Confidence 455 447899999999764
No 30
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=25.63 E-value=25 Score=27.14 Aligned_cols=18 Identities=6% Similarity=0.093 Sum_probs=14.1
Q ss_pred CCCceeEcCChHHHHHHHH
Q 043175 3 SLMGFRFQPSNEQIFCLLE 21 (139)
Q Consensus 3 lp~G~rF~PtDeELi~~yL 21 (139)
+||- .|.||+++|+.||-
T Consensus 136 ~~P~-Y~~~s~~~l~~~f~ 153 (332)
T 2r8w_A 136 APVS-YTPLTQEEAYHHFA 153 (332)
T ss_dssp CCCC-SSCCCHHHHHHHHH
T ss_pred CCCC-CCCCCHHHHHHHHH
Confidence 5664 47899999999874
No 31
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=25.61 E-value=22 Score=26.98 Aligned_cols=18 Identities=6% Similarity=0.220 Sum_probs=13.7
Q ss_pred CCCceeEcCChHHHHHHHH
Q 043175 3 SLMGFRFQPSNEQIFCLLE 21 (139)
Q Consensus 3 lp~G~rF~PtDeELi~~yL 21 (139)
+|| |.|.||+++|+.||-
T Consensus 110 ~~P-~y~~~s~~~l~~~f~ 127 (301)
T 3m5v_A 110 VAP-YYNKPTQQGLYEHYK 127 (301)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred cCC-CCCCCCHHHHHHHHH
Confidence 345 447899999999774
No 32
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=25.01 E-value=17 Score=27.48 Aligned_cols=18 Identities=0% Similarity=-0.164 Sum_probs=13.4
Q ss_pred CCCceeEcCChHHHHHHHH
Q 043175 3 SLMGFRFQPSNEQIFCLLE 21 (139)
Q Consensus 3 lp~G~rF~PtDeELi~~yL 21 (139)
+||- .|.||+++|+.||-
T Consensus 103 ~~P~-y~~~s~~~l~~~f~ 120 (291)
T 3a5f_A 103 ITPY-YNKTTQKGLVKHFK 120 (291)
T ss_dssp ECCC-SSCCCHHHHHHHC-
T ss_pred cCCC-CCCCCHHHHHHHHH
Confidence 4564 47899999999774
No 33
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=24.52 E-value=27 Score=26.70 Aligned_cols=18 Identities=6% Similarity=0.113 Sum_probs=13.7
Q ss_pred CCCceeEcCChHHHHHHHH
Q 043175 3 SLMGFRFQPSNEQIFCLLE 21 (139)
Q Consensus 3 lp~G~rF~PtDeELi~~yL 21 (139)
+|| |.|.||+++|+.||-
T Consensus 126 ~~P-~y~~~s~~~l~~~f~ 143 (315)
T 3na8_A 126 LPI-SYWKLNEAEVFQHYR 143 (315)
T ss_dssp CCC-CSSCCCHHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHHH
Confidence 455 447899999999765
No 34
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=24.28 E-value=24 Score=26.86 Aligned_cols=27 Identities=4% Similarity=-0.027 Sum_probs=17.2
Q ss_pred CCCceeEcCChHHHHHHHHhHhcCCCCCC
Q 043175 3 SLMGFRFQPSNEQIFCLLEKKRLNPHFSH 31 (139)
Q Consensus 3 lp~G~rF~PtDeELi~~yL~~k~~g~~~~ 31 (139)
+|| |.|.||+++|+.||-. -+..-++|
T Consensus 117 ~~P-~y~~~s~~~l~~~f~~-va~a~~lP 143 (304)
T 3l21_A 117 VTP-YYSKPPQRGLQAHFTA-VADATELP 143 (304)
T ss_dssp ECC-CSSCCCHHHHHHHHHH-HHTSCSSC
T ss_pred CCC-CCCCCCHHHHHHHHHH-HHHhcCCC
Confidence 345 4578999999997643 43333444
No 35
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=24.03 E-value=22 Score=28.07 Aligned_cols=18 Identities=11% Similarity=0.013 Sum_probs=14.6
Q ss_pred CCCceeEcCChHHHHHHHH
Q 043175 3 SLMGFRFQPSNEQIFCLLE 21 (139)
Q Consensus 3 lp~G~rF~PtDeELi~~yL 21 (139)
+|| |.+.||+++|+.||-
T Consensus 161 v~P-yY~k~sq~gl~~hf~ 178 (360)
T 4dpp_A 161 INP-YYGKTSIEGLIAHFQ 178 (360)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred cCC-CCCCCCHHHHHHHHH
Confidence 566 668899999999874
No 36
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=23.94 E-value=22 Score=26.78 Aligned_cols=18 Identities=11% Similarity=0.264 Sum_probs=13.6
Q ss_pred CCCceeEcCChHHHHHHHH
Q 043175 3 SLMGFRFQPSNEQIFCLLE 21 (139)
Q Consensus 3 lp~G~rF~PtDeELi~~yL 21 (139)
+|| |.|.||+++|+.||-
T Consensus 103 ~~P-~y~~~~~~~l~~~f~ 120 (291)
T 3tak_A 103 VTP-YYNKPTQEGLYQHYK 120 (291)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred cCC-CCCCCCHHHHHHHHH
Confidence 455 446899999999774
No 37
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=23.80 E-value=25 Score=26.61 Aligned_cols=18 Identities=22% Similarity=0.394 Sum_probs=13.7
Q ss_pred CCCceeEcCChHHHHHHHH
Q 043175 3 SLMGFRFQPSNEQIFCLLE 21 (139)
Q Consensus 3 lp~G~rF~PtDeELi~~yL 21 (139)
+|| |.|.||+++|+.||-
T Consensus 109 ~~P-~y~~~~~~~l~~~f~ 126 (297)
T 3flu_A 109 VVP-YYNKPSQEGIYQHFK 126 (297)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHHH
Confidence 455 447899999999774
No 38
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=23.34 E-value=26 Score=26.85 Aligned_cols=19 Identities=11% Similarity=0.277 Sum_probs=14.1
Q ss_pred CCCceeEcCChHHHHHHHHh
Q 043175 3 SLMGFRFQPSNEQIFCLLEK 22 (139)
Q Consensus 3 lp~G~rF~PtDeELi~~yL~ 22 (139)
+|| |.|.||+++|+.||-.
T Consensus 125 ~~P-~y~~~s~~~l~~~f~~ 143 (314)
T 3qze_A 125 VTP-YYNKPTQEGMYQHFRH 143 (314)
T ss_dssp ECC-CSSCCCHHHHHHHHHH
T ss_pred cCC-CCCCCCHHHHHHHHHH
Confidence 455 4478999999997653
No 39
>3pp4_P B-lymphocyte antigen CD20; antibody FAB fragment IG-domain, cyclic peptide, antib antigen, immune system; 1.60A {Homo sapiens} PDB: 3bky_P 2osl_P
Probab=20.73 E-value=41 Score=16.10 Aligned_cols=12 Identities=25% Similarity=0.346 Sum_probs=7.6
Q ss_pred CCCCCCCcCccc
Q 043175 39 DICGLEPWDLAG 50 (139)
Q Consensus 39 Dvy~~~P~~L~~ 50 (139)
|||.++|..-.+
T Consensus 1 nIynCE~a~pse 12 (25)
T 3pp4_P 1 NIYNCEPANPSE 12 (26)
T ss_dssp -CCCCSCSSGGG
T ss_pred CccccccCCccc
Confidence 688898855433
No 40
>2pcq_A Putative dihydrodipicolinate synthase; lyase, lysine biosynthesis, dihydrodipicoliante, S genomics, NPPSFA; 2.10A {Thermus thermophilus}
Probab=20.41 E-value=21 Score=26.78 Aligned_cols=18 Identities=6% Similarity=0.043 Sum_probs=13.9
Q ss_pred CCCceeEcC-ChHHHHHHHH
Q 043175 3 SLMGFRFQP-SNEQIFCLLE 21 (139)
Q Consensus 3 lp~G~rF~P-tDeELi~~yL 21 (139)
+||- .|.| |+++|+.||-
T Consensus 95 ~~P~-y~~~~~~~~l~~~f~ 113 (283)
T 2pcq_A 95 TPPR-YYHGSLGAGLLRYYE 113 (283)
T ss_dssp CCCC-TTGGGTTTHHHHHHH
T ss_pred cCCc-CCCCCCHHHHHHHHH
Confidence 5664 4789 9999999774
Done!