Query 043175
Match_columns 139
No_of_seqs 113 out of 857
Neff 7.6
Searched_HMMs 13730
Date Tue Mar 26 00:07:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043175.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/043175hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ut7a_ b.143.1.1 (A:) No apic 100.0 1E-53 7.6E-58 310.2 11.9 133 1-136 15-147 (166)
2 d1cmca_ a.43.1.5 (A:) Met repr 63.7 2.5 0.00018 25.4 2.6 39 10-52 50-88 (104)
3 d1o5ka_ c.1.10.1 (A:) Dihydrod 42.0 3.4 0.00025 29.1 0.7 27 3-31 103-129 (295)
4 d1f74a_ c.1.10.1 (A:) N-acetyl 36.8 7.7 0.00056 27.2 2.0 20 2-22 105-124 (293)
5 d1ldda_ a.4.5.34 (A:) Anaphase 36.1 6.3 0.00046 22.7 1.2 27 3-30 36-63 (74)
6 d1xkya1 c.1.10.1 (A:1-292) Dih 31.7 6.2 0.00045 27.6 0.7 18 3-21 105-122 (292)
7 d2a6na1 c.1.10.1 (A:1-292) Dih 30.7 7.4 0.00054 27.3 1.0 27 3-31 103-129 (292)
8 d1q1va_ a.159.4.1 (A:) DEK C-t 26.3 20 0.0014 20.1 2.2 20 10-30 11-30 (70)
9 d1rqba1 a.5.7.2 (A:307-474) Tr 26.2 12 0.00089 24.5 1.4 18 9-26 126-143 (168)
10 d1xxxa1 c.1.10.1 (A:5-300) Dih 26.0 10 0.00073 26.6 1.0 27 3-31 109-135 (296)
11 d1xhca3 d.87.1.1 (A:290-351) N 25.7 15 0.0011 20.0 1.5 26 78-104 24-49 (62)
12 d1hl2a_ c.1.10.1 (A:) N-acetyl 24.2 11 0.00083 26.2 1.0 19 3-22 104-122 (295)
13 d1rutx4 g.39.1.3 (X:114-146) L 22.6 14 0.001 17.4 0.9 9 2-10 8-16 (33)
14 d1w3ia_ c.1.10.1 (A:) 2-keto-3 21.8 13 0.00096 25.9 0.9 19 3-21 98-116 (293)
No 1
>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=100.00 E-value=1e-53 Score=310.21 Aligned_cols=133 Identities=30% Similarity=0.540 Sum_probs=118.5
Q ss_pred CCCCCceeEcCChHHHHHHHHhHhcCCCCCCCCeeeecCCCCCCCcCccccCccCCCCceEEEEeccccccCCCCcceee
Q 043175 1 MESLMGFRFQPSNEQIFCLLEKKRLNPHFSHHTIKDIDDICGLEPWDLAGASKTESEDRVCYFFCKPCYKYKKSTRAHRR 80 (139)
Q Consensus 1 ~~lp~G~rF~PtDeELi~~yL~~k~~g~~~~~~~I~~~Dvy~~~P~~L~~~~~~~~~~~~~yFF~~~~~~~~~~~r~~R~ 80 (139)
|+|||||||+|||||||.+||++|+.|.+++.++|+++|||++|||+||+... .++++||||+++++++++++|.+|+
T Consensus 15 l~LPpG~RF~PTDeELv~~YL~~Ki~g~~l~~~~I~~~Dvy~~~Pw~Lp~~~~--~~~~~wyFft~~~~k~~~g~r~~R~ 92 (166)
T d1ut7a_ 15 LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKAL--FGEKEWYFFSPRDRKYPNGSRPNRV 92 (166)
T ss_dssp SCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSS--SCSSEEEEEEECCC-------CCEE
T ss_pred ccCCCccccCCCcHHHHHHHHHHHHcCCCCCcccceeccCCcCChhhccchhc--cCcceEEEEeeeccccCCCCccccc
Confidence 68999999999999999999999999999999999999999999999998753 4688999999999999999999999
Q ss_pred cccceeEecCCCeEEecCCceEeeeEEEEEEeeCCCCCCCCcCeEEEEEEeCCCCC
Q 043175 81 TNAGYWKVTGRGSKIKTRNGLSGTKKILTFQYHGPASKKAKIGWVMHEYHVNDDPS 136 (139)
Q Consensus 81 ~~~G~W~~~g~~~~i~~~~~~~G~k~~l~f~~~~~~~~~~kt~W~M~EY~l~~~~~ 136 (139)
+++|+||++|+.++|.++|.+||+|++|+| |+++.+++.+|+|+||||+|.+++.
T Consensus 93 ~g~G~Wk~~g~~~~i~~~g~~vG~kk~l~f-y~~~~~~~~~t~W~M~EY~l~~~~~ 147 (166)
T d1ut7a_ 93 AGSGYWKATGTDKIISTEGQRVGIKKALVF-YIGKAPKGTKTNWIMHEYRLIEPSR 147 (166)
T ss_dssp ETTEEEEEEEEEEEEEETTEEEEEEEEEEE-EESSTTSCEEEEEEEEEEEECCCC-
T ss_pred cCCCEecccCCCceEecCCcEEEEEEEEEE-EecCCCCCCccCeEEEEEecCCccc
Confidence 999999999999999999999999999999 9999999999999999999988654
No 2
>d1cmca_ a.43.1.5 (A:) Met repressor, MetJ (MetR) {Escherichia coli [TaxId: 562]}
Probab=63.71 E-value=2.5 Score=25.41 Aligned_cols=39 Identities=10% Similarity=0.104 Sum_probs=32.2
Q ss_pred cCChHHHHHHHHhHhcCCCCCCCCeeeecCCCCCCCcCccccC
Q 043175 10 QPSNEQIFCLLEKKRLNPHFSHHTIKDIDDICGLEPWDLAGAS 52 (139)
Q Consensus 10 ~PtDeELi~~yL~~k~~g~~~~~~~I~~~Dvy~~~P~~L~~~~ 52 (139)
+-|..||++.-...-..|+|+|. +.|+-...|.+||...
T Consensus 50 HATNSELLCEAFLHAfTGQPLP~----D~Dl~Kd~~~~iP~~~ 88 (104)
T d1cmca_ 50 HATNSELLCEAFLHAFTGQPLPD----DADLRKERSDEIPEAA 88 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCCCC----GGGGBTTSCSCSCHHH
T ss_pred hcccHHHHHHHHHHHhcCCCCCC----chhhhhcCcccccHHH
Confidence 45778888887777889999996 6788889999998764
No 3
>d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]}
Probab=42.01 E-value=3.4 Score=29.09 Aligned_cols=27 Identities=7% Similarity=-0.006 Sum_probs=17.7
Q ss_pred CCCceeEcCChHHHHHHHHhHhcCCCCCC
Q 043175 3 SLMGFRFQPSNEQIFCLLEKKRLNPHFSH 31 (139)
Q Consensus 3 lp~G~rF~PtDeELi~~yL~~k~~g~~~~ 31 (139)
+|| |.|.||++||+.||-. -+...++|
T Consensus 103 ~pP-~y~~~s~~~i~~~~~~-ia~a~~~p 129 (295)
T d1o5ka_ 103 VTP-YYNKPTQEGLYQHYKY-ISERTDLG 129 (295)
T ss_dssp ECC-CSSCCCHHHHHHHHHH-HHTTCSSC
T ss_pred eCC-CCCCCCHHHHHHHHHH-HHhccCCC
Confidence 566 5578999999996643 44433444
No 4
>d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus influenzae [TaxId: 727]}
Probab=36.77 E-value=7.7 Score=27.18 Aligned_cols=20 Identities=10% Similarity=0.011 Sum_probs=15.5
Q ss_pred CCCCceeEcCChHHHHHHHHh
Q 043175 2 ESLMGFRFQPSNEQIFCLLEK 22 (139)
Q Consensus 2 ~lp~G~rF~PtDeELi~~yL~ 22 (139)
-+||-| |.||++|++.+|..
T Consensus 105 ~~pP~~-~~~s~~~~~~~~~~ 124 (293)
T d1f74a_ 105 AVTPFY-YKFSFPEIKHYYDT 124 (293)
T ss_dssp CCCCCS-SCCCHHHHHHHHHH
T ss_pred ccCccc-cccchHHHHHHHhc
Confidence 356655 78999999998864
No 5
>d1ldda_ a.4.5.34 (A:) Anaphase promoting complex (APC) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=36.10 E-value=6.3 Score=22.68 Aligned_cols=27 Identities=4% Similarity=-0.102 Sum_probs=21.2
Q ss_pred CCCceeE-cCChHHHHHHHHhHhcCCCCC
Q 043175 3 SLMGFRF-QPSNEQIFCLLEKKRLNPHFS 30 (139)
Q Consensus 3 lp~G~rF-~PtDeELi~~yL~~k~~g~~~ 30 (139)
.|.|+.| .+|.+||-. ||..++..+.+
T Consensus 36 v~~~~~~~~~t~~eL~~-FL~~~V~e~kL 63 (74)
T d1ldda_ 36 VPKDWGYNRITLQQLEG-YLNTLADEGRL 63 (74)
T ss_dssp SCGGGCCTTCCHHHHHH-HHHHHHHTTSE
T ss_pred cCCCCCCCCcCHHHHHH-HHHHHHhcCce
Confidence 4667888 478888877 89999987765
No 6
>d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]}
Probab=31.75 E-value=6.2 Score=27.61 Aligned_cols=18 Identities=17% Similarity=0.311 Sum_probs=14.3
Q ss_pred CCCceeEcCChHHHHHHHH
Q 043175 3 SLMGFRFQPSNEQIFCLLE 21 (139)
Q Consensus 3 lp~G~rF~PtDeELi~~yL 21 (139)
+|| +.|.||+++|+.||-
T Consensus 105 ~pP-~~~~~s~~~i~~~~~ 122 (292)
T d1xkya1 105 VAP-YYNKPSQEGMYQHFK 122 (292)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHHH
Confidence 466 668899999999665
No 7
>d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]}
Probab=30.73 E-value=7.4 Score=27.28 Aligned_cols=27 Identities=11% Similarity=0.033 Sum_probs=17.1
Q ss_pred CCCceeEcCChHHHHHHHHhHhcCCCCCC
Q 043175 3 SLMGFRFQPSNEQIFCLLEKKRLNPHFSH 31 (139)
Q Consensus 3 lp~G~rF~PtDeELi~~yL~~k~~g~~~~ 31 (139)
+||-| |.|||+||+.+|- .-+...++|
T Consensus 103 ~pP~~-~~~~~~~i~~~f~-~v~~~~~~p 129 (292)
T d2a6na1 103 VTPYY-NRPSQEGLYQHFK-AIAEHTDLP 129 (292)
T ss_dssp ECCCS-SCCCHHHHHHHHH-HHHHTCSSC
T ss_pred cCCCC-CCCCHHHHHHHHH-HHhhccCCc
Confidence 45544 7899999999654 344434444
No 8
>d1q1va_ a.159.4.1 (A:) DEK C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.32 E-value=20 Score=20.07 Aligned_cols=20 Identities=25% Similarity=0.189 Sum_probs=15.0
Q ss_pred cCChHHHHHHHHhHhcCCCCC
Q 043175 10 QPSNEQIFCLLEKKRLNPHFS 30 (139)
Q Consensus 10 ~PtDeELi~~yL~~k~~g~~~ 30 (139)
-|||+||.. .|+..+...++
T Consensus 11 ~ptd~ei~~-~i~~IL~~aDL 30 (70)
T d1q1va_ 11 PPTDEELKE-TIKKLLASANL 30 (70)
T ss_dssp CCCHHHHHH-HHHHHHTTSCG
T ss_pred CCCHHHHHH-HHHHHHHhCCH
Confidence 499999988 57766666554
No 9
>d1rqba1 a.5.7.2 (A:307-474) Transcarboxylase 5S subunit, C-terminal domain {Propionibacterium freudenreichii shermanii [TaxId: 1752]}
Probab=26.20 E-value=12 Score=24.53 Aligned_cols=18 Identities=11% Similarity=0.261 Sum_probs=15.3
Q ss_pred EcCChHHHHHHHHhHhcC
Q 043175 9 FQPSNEQIFCLLEKKRLN 26 (139)
Q Consensus 9 F~PtDeELi~~yL~~k~~ 26 (139)
+..|||||+.+.|.|++.
T Consensus 126 ~~~sdedlLsyaLyP~V~ 143 (168)
T d1rqba1 126 FNGTDEDVLTYALFPQVA 143 (168)
T ss_dssp CCSSHHHHHHHHHCTTTH
T ss_pred CCCCHHHHHHHHcCChhH
Confidence 468999999999998765
No 10
>d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=25.95 E-value=10 Score=26.61 Aligned_cols=27 Identities=4% Similarity=-0.027 Sum_probs=17.2
Q ss_pred CCCceeEcCChHHHHHHHHhHhcCCCCCC
Q 043175 3 SLMGFRFQPSNEQIFCLLEKKRLNPHFSH 31 (139)
Q Consensus 3 lp~G~rF~PtDeELi~~yL~~k~~g~~~~ 31 (139)
.|| +.|.||+++|+.+|- .-+...++|
T Consensus 109 ~~P-~~~~~~~~~l~~~~~-~v~~~~~~p 135 (296)
T d1xxxa1 109 VTP-YYSKPPQRGLQAHFT-AVADATELP 135 (296)
T ss_dssp ECC-CSSCCCHHHHHHHHH-HHHTTCSSC
T ss_pred Eec-cCCCCCHHHHHHHHH-HHHHhcCCC
Confidence 345 458899999998654 344444444
No 11
>d1xhca3 d.87.1.1 (A:290-351) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}
Probab=25.71 E-value=15 Score=20.05 Aligned_cols=26 Identities=12% Similarity=0.235 Sum_probs=13.6
Q ss_pred eeecccceeEecCCCeEEecCCceEee
Q 043175 78 HRRTNAGYWKVTGRGSKIKTRNGLSGT 104 (139)
Q Consensus 78 ~R~~~~G~W~~~g~~~~i~~~~~~~G~ 104 (139)
.+..+.|.|-- ...+....++.+||-
T Consensus 24 G~~~g~G~Wid-~~tK~Fy~d~KiiGa 49 (62)
T d1xhca3 24 GNTKGEGKWIE-DNTKVFYENGKIIGA 49 (62)
T ss_dssp ECCSSCEEEEE-TTEEEEC-----CEE
T ss_pred EeccCcceeec-ccceeeeeCCcEEEE
Confidence 45677899954 456666666666663
No 12
>d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]}
Probab=24.24 E-value=11 Score=26.22 Aligned_cols=19 Identities=16% Similarity=-0.034 Sum_probs=14.9
Q ss_pred CCCceeEcCChHHHHHHHHh
Q 043175 3 SLMGFRFQPSNEQIFCLLEK 22 (139)
Q Consensus 3 lp~G~rF~PtDeELi~~yL~ 22 (139)
+|| +.|.+|++|++.+|..
T Consensus 104 ~~p-~~~~~~~~~~~~~~~~ 122 (295)
T d1hl2a_ 104 VTP-FYYPFSFEEHCDHYRA 122 (295)
T ss_dssp ECC-CSSCCCHHHHHHHHHH
T ss_pred eec-cccCCChHHHHHHHHH
Confidence 456 4578999999998864
No 13
>d1rutx4 g.39.1.3 (X:114-146) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.62 E-value=14 Score=17.43 Aligned_cols=9 Identities=33% Similarity=0.471 Sum_probs=5.7
Q ss_pred CCCCceeEc
Q 043175 2 ESLMGFRFQ 10 (139)
Q Consensus 2 ~lp~G~rF~ 10 (139)
+|-||-||+
T Consensus 8 ~LVPGDRFH 16 (33)
T d1rutx4 8 RLVPGDRFH 16 (33)
T ss_dssp BCCTTCEEE
T ss_pred cccCCceeE
Confidence 466676665
No 14
>d1w3ia_ c.1.10.1 (A:) 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus solfataricus [TaxId: 2287]}
Probab=21.79 E-value=13 Score=25.87 Aligned_cols=19 Identities=5% Similarity=-0.034 Sum_probs=14.7
Q ss_pred CCCceeEcCChHHHHHHHH
Q 043175 3 SLMGFRFQPSNEQIFCLLE 21 (139)
Q Consensus 3 lp~G~rF~PtDeELi~~yL 21 (139)
+||-+.+.||+++|+.||-
T Consensus 98 ~~P~~~~~~~~~~i~~~f~ 116 (293)
T d1w3ia_ 98 YAPYYYPRMSEKHLVKYFK 116 (293)
T ss_dssp ECCCSCSSCCHHHHHHHHH
T ss_pred cccchhccchHHHHHHHHH
Confidence 5676667899999998665
Done!