BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043177
(113 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LF64|ATL52_ARATH RING-H2 finger protein ATL52 OS=Arabidopsis thaliana GN=ATL52 PE=2
SV=1
Length = 362
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 59/108 (54%), Gaps = 14/108 (12%)
Query: 1 IDATPSSIENSMAQLIPAHKYHKGTGPVGDEDGICAVCLSEFEEGEELRTLPECLHSYHA 60
I + SM + I +KY G G V D C+VCLSEFEE E LR LP+C H++H
Sbjct: 110 ISTNGDGLNESMIKSITVYKYKSGDGFVDGSD--CSVCLSEFEENESLRLLPKCNHAFHL 167
Query: 61 PCIDMWLYSHSNCPICRSDATPSPQILRPRDSAGPEDMAAGMVQNVDV 108
PCID WL SHSNCP+CR+ T G + A + QNV V
Sbjct: 168 PCIDTWLKSHSNCPLCRAFVT------------GVNNPTASVGQNVSV 203
>sp|Q9SRQ8|ATL51_ARATH RING-H2 finger protein ATL51 OS=Arabidopsis thaliana GN=ATL51 PE=2
SV=2
Length = 356
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 52/79 (65%), Gaps = 2/79 (2%)
Query: 8 IENSMAQLIPAHKYHKGTGPVGDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWL 67
++ S+ + I +KY K G V D C+VCLSEF+E E LR LP+C H++H PCID WL
Sbjct: 134 LDESLIKSITVYKYRKMDGFVESSD--CSVCLSEFQENESLRLLPKCNHAFHVPCIDTWL 191
Query: 68 YSHSNCPICRSDATPSPQI 86
SHSNCP+CR+ S +
Sbjct: 192 KSHSNCPLCRAFIVTSSAV 210
>sp|Q7XLY8|ATL41_ORYSJ E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp.
japonica GN=Os04g0590900 PE=2 SV=2
Length = 383
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 58/98 (59%), Gaps = 10/98 (10%)
Query: 5 PSSIENSMAQLIPAHKYHKGTGPVGDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCID 64
PS ++ ++ I KY +G G V D C+VCL EF +GE LR LP C H++H CID
Sbjct: 129 PSGLDETLINKITVCKYRRGDGFVHTTD--CSVCLGEFSDGESLRLLPRCSHAFHQQCID 186
Query: 65 MWLYSHSNCPICRSD--------ATPSPQILRPRDSAG 94
WL SHSNCP+CR++ A+P P+ P ++ G
Sbjct: 187 TWLKSHSNCPLCRANITFVTVGLASPEPEGCAPGETGG 224
>sp|Q67YI6|ATL65_ARATH RING-H2 finger protein ATL65 OS=Arabidopsis thaliana GN=ATL65 PE=2
SV=2
Length = 411
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 53/94 (56%), Gaps = 8/94 (8%)
Query: 4 TPSSIENSMAQLIPAHKYH----KGTGPVGDEDGI----CAVCLSEFEEGEELRTLPECL 55
+P +++S+ + +P Y G VG CAVCL EFEEG+ +RTLP C
Sbjct: 117 SPYGLDDSVIKTLPLFLYSAAACTGKPAVGKTSAANCRDCAVCLLEFEEGDYVRTLPLCF 176
Query: 56 HSYHAPCIDMWLYSHSNCPICRSDATPSPQILRP 89
H++H CID WL SH NCP+CR+ S +L P
Sbjct: 177 HAFHLECIDEWLRSHPNCPLCRTAILGSAGVLTP 210
>sp|Q8LFY8|ATL54_ARATH RING-H2 finger protein ATL54 OS=Arabidopsis thaliana GN=ATL54 PE=2
SV=2
Length = 413
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 56/96 (58%), Gaps = 4/96 (4%)
Query: 6 SSIENSMAQLIPAHKYHKGTGPVGDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDM 65
+ ++ S+ I Y +G G + D C VCL+EFEE E LR LP+C H++H CID
Sbjct: 150 TGLQQSIINSITICNYKRGDGLIERTD--CPVCLNEFEEDESLRLLPKCNHAFHISCIDT 207
Query: 66 WLYSHSNCPICRSDATPSPQILRPRDSAGPEDMAAG 101
WL SH+NCP+CR+ + PR S GP ++ G
Sbjct: 208 WLSSHTNCPLCRA-GIAMISVTTPRYS-GPVEVTPG 241
>sp|Q84W40|ATL11_ARATH RING-H2 finger protein ATL11 OS=Arabidopsis thaliana GN=ATL11 PE=2
SV=2
Length = 404
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 8 IENSMAQLIPAHKYHK-GTGPVGDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMW 66
++ S+ + P +Y T +G E C+VCL+EFE+ E LR +P+C H +H CID W
Sbjct: 116 LDASIIETFPTFQYSTVKTLRIGKEALECSVCLNEFEDDETLRLIPKCCHVFHPGCIDAW 175
Query: 67 LYSHSNCPICRSDATPSP 84
L SH+ CP+CR+D P P
Sbjct: 176 LRSHTTCPLCRADLIPVP 193
>sp|Q9SG96|ATL72_ARATH RING-H2 finger protein ATL72 OS=Arabidopsis thaliana GN=ATL72 PE=2
SV=1
Length = 181
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 56/104 (53%), Gaps = 9/104 (8%)
Query: 3 ATPSSIENSMAQLIPAHKYHKGTGPVGDEDGICAVCLSEFEEGEELRTLPECLHSYHAPC 62
A + ++ + IP Y G+G + + C +CL +FE+GE++R LP+C H +H C
Sbjct: 84 AAATGLKKQALKQIPVGLY--GSGIIDMKATECLICLGDFEDGEKVRVLPKCNHGFHVRC 141
Query: 63 IDMWLYSHSNCPICRSDAT---PSPQILRPRDSAGPEDMAAGMV 103
ID WL S S+CP CR PSP + RD EDM +V
Sbjct: 142 IDTWLLSRSSCPTCRQSLLLEQPSPMAVSRRD----EDMVVSIV 181
>sp|Q8W571|ATL32_ARATH RING-H2 finger protein ATL32 OS=Arabidopsis thaliana GN=ATL32 PE=2
SV=3
Length = 323
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 8 IENSMAQLIPAHKYHK-GTGPVGDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMW 66
++N++ + P Y +G +D CA+CL+E E+ E +R LP C H +H CID W
Sbjct: 96 LDNAVVESFPVFAYSSVKESKIGSKDLECAICLNELEDHETVRLLPICNHLFHIDCIDTW 155
Query: 67 LYSHSNCPICRSDAT 81
LYSH+ CP+CRS+ T
Sbjct: 156 LYSHATCPVCRSNLT 170
>sp|Q8L9T5|ATL2_ARATH RING-H2 finger protein ATL2 OS=Arabidopsis thaliana GN=ATL2 PE=2
SV=2
Length = 304
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 34/44 (77%)
Query: 35 CAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHSNCPICRS 78
CAVCLSEFEE E R LP C H++H CIDMW +SHS CP+CRS
Sbjct: 119 CAVCLSEFEESETGRVLPNCQHTFHVDCIDMWFHSHSTCPLCRS 162
>sp|Q9LX93|ATL55_ARATH E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana GN=ATL55
PE=1 SV=1
Length = 301
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 42/59 (71%), Gaps = 4/59 (6%)
Query: 21 YHKGTGPVGDEDGI-CAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHSNCPICRS 78
+ KG G + DG C+VCL+EFEE E LR LP+C H++H CID WL SH NCP+CR+
Sbjct: 123 FKKGEGII---DGTECSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRA 178
>sp|Q8LF65|ATL17_ARATH RING-H2 finger protein ATL17 OS=Arabidopsis thaliana GN=ATL17 PE=2
SV=2
Length = 235
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 3 ATPSSIENSMAQLIPAHKYHKGTGPVGDEDGICAVCLSEFEEGEELRTLPECLHSYHAPC 62
+TP + S+ + +P + T E C+VCLSEF++ E R +P C H++H C
Sbjct: 47 STPGGLNPSIIKSLPIFTFSAVTALFAME---CSVCLSEFKDNESGRVMPNCKHTFHVHC 103
Query: 63 IDMWLYSHSNCPICRSDATP 82
IDMW +SHS+CP+CRS P
Sbjct: 104 IDMWFHSHSSCPLCRSQIEP 123
>sp|Q9M0R5|ATL36_ARATH Putative RING-H2 finger protein ATL36 OS=Arabidopsis thaliana
GN=ATL36 PE=3 SV=1
Length = 345
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 8 IENSMAQLIPAHKYHKGTGPVGDEDGI-CAVCLSEFEEGEELRTLPECLHSYHAPCIDMW 66
+E + + P Y + G + G+ CA+CLSEFE+ E LR +P C H++HA CID+W
Sbjct: 95 LEKEVIESFPTFLYSEVKGLKIGKGGVECAICLSEFEDQETLRWMPPCSHTFHANCIDVW 154
Query: 67 LYSHSNCPICRSDATPSP 84
L S S CP+CR++ + P
Sbjct: 155 LSSWSTCPVCRANLSLKP 172
>sp|P93823|ATL1_ARATH RING-H2 finger protein ATL1 OS=Arabidopsis thaliana GN=ATL1 PE=2
SV=1
Length = 381
Score = 74.7 bits (182), Expect = 1e-13, Method: Composition-based stats.
Identities = 32/79 (40%), Positives = 49/79 (62%), Gaps = 5/79 (6%)
Query: 8 IENSMAQLIPAHKYHKGTGPVGDEDGI-----CAVCLSEFEEGEELRTLPECLHSYHAPC 62
++ S + IP K+ K G+ED C+VCL+EF+E E+LR +P C H +H C
Sbjct: 102 LDESAIRAIPVFKFKKRDVVAGEEDQSKNSQECSVCLNEFQEDEKLRIIPNCCHVFHIDC 161
Query: 63 IDMWLYSHSNCPICRSDAT 81
ID+WL ++NCP+CR+ +
Sbjct: 162 IDIWLQGNANCPLCRTSVS 180
>sp|Q9LRB7|EL5_ORYSJ E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica
GN=EL5.1 PE=1 SV=1
Length = 325
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%)
Query: 35 CAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHSNCPICR 77
CAVCL+E E+GEE R LP C H +HA C+DMWL SHS CP+CR
Sbjct: 134 CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 176
>sp|Q5EAE9|ATL43_ARATH RING-H2 finger protein ATL43 OS=Arabidopsis thaliana GN=ATL43 PE=2
SV=2
Length = 407
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 51/83 (61%), Gaps = 4/83 (4%)
Query: 6 SSIENSMAQLIPAHKYHKGTGPVGDEDGI-CAVCLSEFEEGEELRTLPECLHSYHAPCID 64
S I+ S+ + +P ++ +G +DG+ CAVCL+ FE E LR LP+C H++H C+D
Sbjct: 119 SGIDRSVIESLPVFRFGALSG---HKDGLECAVCLARFEPTEVLRLLPKCKHAFHVECVD 175
Query: 65 MWLYSHSNCPICRSDATPSPQIL 87
WL +HS CP+CR P +L
Sbjct: 176 TWLDAHSTCPLCRYRVDPEDILL 198
>sp|P0C041|ATL53_ARATH Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana
GN=ATL53 PE=3 SV=2
Length = 310
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 48/78 (61%)
Query: 1 IDATPSSIENSMAQLIPAHKYHKGTGPVGDEDGICAVCLSEFEEGEELRTLPECLHSYHA 60
++++ + +++++ + I K K C++CL EF E E LR LP+C H++H
Sbjct: 121 LESSTAGLDDTLIKKIGFFKLKKHQNGFKINGTDCSICLGEFNEDESLRLLPKCNHTFHV 180
Query: 61 PCIDMWLYSHSNCPICRS 78
CID WL SHSNCP+CR+
Sbjct: 181 VCIDRWLKSHSNCPLCRA 198
>sp|Q9C7I1|ATL34_ARATH RING-H2 finger protein ATL34 OS=Arabidopsis thaliana GN=ATL34 PE=2
SV=1
Length = 327
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 16 IPAHKYHKGTGPVGDEDGI-CAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHSNCP 74
P+ Y + G + G+ CA+CL+EFE+ E LR +P C H++HA CID+WL S S CP
Sbjct: 108 FPSFLYSQVKGLKIGKGGVECAICLNEFEDEETLRLMPPCSHAFHASCIDVWLSSRSTCP 167
Query: 75 ICRSDATPSP 84
+CR+ P P
Sbjct: 168 VCRASLPPKP 177
>sp|Q9SKK8|ATL22_ARATH RING-H2 finger protein ATL22 OS=Arabidopsis thaliana GN=ATL22 PE=2
SV=2
Length = 377
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 38/56 (67%)
Query: 27 PVGDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHSNCPICRSDATP 82
P G D +C +CLSE+ E +R LPEC H +H CID WL HS+CP+CRS+ +P
Sbjct: 319 PTGSNDVVCPICLSEYATKETVRCLPECEHCFHTECIDAWLKLHSSCPVCRSNPSP 374
>sp|Q9M0R6|ATL35_ARATH Putative RING-H2 finger protein ATL35 OS=Arabidopsis thaliana
GN=ATL35 PE=3 SV=1
Length = 302
Score = 72.8 bits (177), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 8 IENSMAQLIPAHKYHKGTGPVGDEDGI-CAVCLSEFEEGEELRTLPECLHSYHAPCIDMW 66
+E + + P Y + G + G+ CA+CLSEF + E LR +P C H++HA CID+W
Sbjct: 95 LEKELVESFPIFLYSEVKGLKIGKGGVECAICLSEFVDKETLRWMPPCSHTFHANCIDVW 154
Query: 67 LYSHSNCPICRSDATPSP 84
L S S CP CR++ + P
Sbjct: 155 LSSQSTCPACRANLSLKP 172
>sp|Q9XF63|ATL3_ARATH RING-H2 finger protein ATL3 OS=Arabidopsis thaliana GN=ATL3 PE=2
SV=1
Length = 324
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 46/77 (59%), Gaps = 13/77 (16%)
Query: 31 EDGI-CAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHSNCPICRSDATPSPQILRP 89
+DG+ C++CLSE +G++ R LP+C HS+H CIDMW SHS CPICR+
Sbjct: 122 KDGLECSICLSELVKGDKARLLPKCNHSFHVECIDMWFQSHSTCPICRNTV--------- 172
Query: 90 RDSAGPEDMAAGMVQNV 106
GPE ++ V+ V
Sbjct: 173 ---LGPEQASSKRVEQV 186
>sp|Q5RCV8|RNF13_PONAB E3 ubiquitin-protein ligase RNF13 OS=Pongo abelii GN=RNF13 PE=2
SV=1
Length = 381
Score = 72.0 bits (175), Expect = 1e-12, Method: Composition-based stats.
Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 7/69 (10%)
Query: 16 IPAHKYHKGTGPVGDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLY-SHSNCP 74
+P HK+ KG DE +CA+CL E+E+G++LR LP C H+YH C+D WL + CP
Sbjct: 226 LPVHKFKKG-----DEYDVCAICLDEYEDGDKLRILP-CSHAYHCKCVDPWLTKTKKTCP 279
Query: 75 ICRSDATPS 83
+C+ PS
Sbjct: 280 VCKQKVVPS 288
>sp|O43567|RNF13_HUMAN E3 ubiquitin-protein ligase RNF13 OS=Homo sapiens GN=RNF13 PE=1
SV=1
Length = 381
Score = 72.0 bits (175), Expect = 1e-12, Method: Composition-based stats.
Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 7/69 (10%)
Query: 16 IPAHKYHKGTGPVGDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLY-SHSNCP 74
+P HK+ KG DE +CA+CL E+E+G++LR LP C H+YH C+D WL + CP
Sbjct: 226 LPVHKFKKG-----DEYDVCAICLDEYEDGDKLRILP-CSHAYHCKCVDPWLTKTKKTCP 279
Query: 75 ICRSDATPS 83
+C+ PS
Sbjct: 280 VCKQKVVPS 288
>sp|Q9SK92|ATL15_ARATH E3 ubiquitin-protein ligase ATL15 OS=Arabidopsis thaliana GN=ATL15
PE=1 SV=1
Length = 381
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 3 ATPSSIENSMAQLIPAHKYHK-GTGPVGDEDGICAVCLSEFEEGEELRTLPECLHSYHAP 61
T ++ S+ + P Y T +G E C VCL+EFE+ E LR +P+C H +H
Sbjct: 85 TTEPGLDASVIETFPTFPYSTVKTLRIGKEALECPVCLNEFEDDETLRLIPQCCHVFHPG 144
Query: 62 CIDMWLYSHSNCPICRSDATPSP 84
CID WL S + CP+CR++ P P
Sbjct: 145 CIDAWLRSQTTCPLCRANLVPVP 167
>sp|Q90972|RNF13_CHICK E3 ubiquitin-protein ligase RNF13 OS=Gallus gallus GN=RNF13 PE=1
SV=1
Length = 381
Score = 71.6 bits (174), Expect = 1e-12, Method: Composition-based stats.
Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 7/69 (10%)
Query: 16 IPAHKYHKGTGPVGDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLY-SHSNCP 74
+P HK+ KG DE +CA+CL E+E+G++LR LP C H+YH C+D WL + CP
Sbjct: 226 LPVHKFKKG-----DEYDVCAICLDEYEDGDKLRILP-CSHAYHCKCVDPWLTKTKKTCP 279
Query: 75 ICRSDATPS 83
+C+ PS
Sbjct: 280 VCKQKVVPS 288
>sp|Q0VD51|RNF13_BOVIN E3 ubiquitin-protein ligase RNF13 OS=Bos taurus GN=RNF13 PE=2 SV=1
Length = 380
Score = 71.6 bits (174), Expect = 1e-12, Method: Composition-based stats.
Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 7/69 (10%)
Query: 16 IPAHKYHKGTGPVGDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLY-SHSNCP 74
+P HK+ KG DE +CA+CL E+E+G++LR LP C H+YH C+D WL + CP
Sbjct: 226 LPVHKFKKG-----DEYDVCAICLDEYEDGDKLRILP-CSHAYHCKCVDPWLTKTKKTCP 279
Query: 75 ICRSDATPS 83
+C+ PS
Sbjct: 280 VCKQKVVPS 288
>sp|O22255|ATL64_ARATH RING-H2 finger protein ATL64 OS=Arabidopsis thaliana GN=ATL64 PE=2
SV=1
Length = 227
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 48/81 (59%)
Query: 7 SIENSMAQLIPAHKYHKGTGPVGDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMW 66
+++ ++ IP Y P +E C+VCLSEFEE +E R LP+C HS+H CID W
Sbjct: 80 ALDQAVLDKIPIFVYSSKNPPPPEEKEECSVCLSEFEEEDEGRLLPKCGHSFHVDCIDTW 139
Query: 67 LYSHSNCPICRSDATPSPQIL 87
S S CP+CR+ P Q++
Sbjct: 140 FRSRSTCPLCRAPVQPPFQVI 160
>sp|Q9ZV53|ATL49_ARATH Putative RING-H2 finger protein ATL49 OS=Arabidopsis thaliana
GN=ATL49 PE=3 SV=1
Length = 423
Score = 71.6 bits (174), Expect = 1e-12, Method: Composition-based stats.
Identities = 33/75 (44%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 6 SSIENSMAQLIPAHKYHKGTG-PVGDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCID 64
S ++ S+ +P Y G + D C VCL EFE ++LR LP+C H++H CID
Sbjct: 98 SGVDQSLIDTLPVFHYKSIVGLKISPFD--CPVCLCEFETEDKLRLLPKCSHAFHVECID 155
Query: 65 MWLYSHSNCPICRSD 79
WL SHS CP+CRS+
Sbjct: 156 TWLLSHSTCPLCRSN 170
>sp|O54965|RNF13_MOUSE E3 ubiquitin-protein ligase RNF13 OS=Mus musculus GN=Rnf13 PE=1
SV=2
Length = 381
Score = 71.2 bits (173), Expect = 2e-12, Method: Composition-based stats.
Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 7/69 (10%)
Query: 16 IPAHKYHKGTGPVGDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLY-SHSNCP 74
+P HK+ KG DE +CA+CL E+E+G++LR LP C H+YH C+D WL + CP
Sbjct: 226 LPVHKFKKG-----DEYDVCAICLEEYEDGDKLRILP-CSHAYHCKCVDPWLTKTKKTCP 279
Query: 75 ICRSDATPS 83
+C+ PS
Sbjct: 280 VCKQKVVPS 288
>sp|Q66HG0|RNF13_RAT E3 ubiquitin-protein ligase RNF13 OS=Rattus norvegicus GN=Rnf13
PE=2 SV=1
Length = 380
Score = 70.9 bits (172), Expect = 2e-12, Method: Composition-based stats.
Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 7/69 (10%)
Query: 16 IPAHKYHKGTGPVGDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLY-SHSNCP 74
+P HK+ KG DE +CA+CL E+E+G++LR LP C H+YH C+D WL + CP
Sbjct: 226 LPVHKFKKG-----DEYDVCAICLEEYEDGDKLRILP-CSHAYHCKCVDPWLTKTKKTCP 279
Query: 75 ICRSDATPS 83
+C+ PS
Sbjct: 280 VCKQKVVPS 288
>sp|Q84TF5|RHA4A_ARATH RING-H2 zinc finger protein RHA4a OS=Arabidopsis thaliana GN=RHA4A
PE=2 SV=1
Length = 174
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 37/56 (66%)
Query: 28 VGDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHSNCPICRSDATPS 83
+G D +C VCL EFE EEL +P C H +H CI +WLYSH+ CP+CRS + S
Sbjct: 98 LGTRDSLCCVCLGEFELKEELVEMPLCKHIFHLDCIHLWLYSHNTCPLCRSSVSIS 153
>sp|Q9LM69|ATL80_ARATH RING-H2 finger protein ATL80 OS=Arabidopsis thaliana GN=ATL80 PE=1
SV=1
Length = 197
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 1 IDATPSSIENSMAQLIPAHKYHKGTGPVGDEDGICAVCLSEFEEGEELRTLPECLHSYHA 60
+ A ++ + Q +P + + P ++ CA+CL+EF G+ELR LP+C H +H
Sbjct: 78 VAAANKGLKKKVLQSLPKLTFSPES-PESEKFAECAICLAEFSAGDELRVLPQCGHGFHV 136
Query: 61 PCIDMWLYSHSNCPICR 77
CID WL SHS+CP CR
Sbjct: 137 ACIDTWLGSHSSCPSCR 153
>sp|Q8GT75|NIP1_ARATH NEP1-interacting protein 1 OS=Arabidopsis thaliana GN=NIP1 PE=1
SV=2
Length = 236
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 38/51 (74%), Gaps = 1/51 (1%)
Query: 29 GDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHSNCPICRSD 79
G++D C+VCL +F+ GE +R+LP C H +H PCID WL+ H +CP+CR D
Sbjct: 186 GNKDS-CSVCLQDFQLGETVRSLPHCHHMFHLPCIDNWLFRHGSCPMCRRD 235
>sp|Q9ZT49|ATL45_ARATH RING-H2 finger protein ATL45 OS=Arabidopsis thaliana GN=ATL45 PE=2
SV=1
Length = 200
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 36/54 (66%)
Query: 29 GDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHSNCPICRSDATP 82
GD CA+C++EF EGEE+R LP C H++H CID WL S S+CP CR P
Sbjct: 107 GDSSTECAICITEFSEGEEIRILPLCSHAFHVACIDKWLTSRSSCPSCRRILVP 160
>sp|Q9SLC4|ATL40_ARATH RING-H2 finger protein ATL40 OS=Arabidopsis thaliana GN=ATL40 PE=2
SV=1
Length = 217
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 37/61 (60%)
Query: 35 CAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHSNCPICRSDATPSPQILRPRDSAG 94
CAVCLS EE + R LP C H +H C+D WL + S CP+CR++A PS L P G
Sbjct: 100 CAVCLSLLEEKDNARMLPNCKHVFHVSCVDTWLTTQSTCPVCRTEAEPSHPRLEPEPREG 159
Query: 95 P 95
P
Sbjct: 160 P 160
>sp|O80927|ATL33_ARATH RING-H2 finger protein ATL33 OS=Arabidopsis thaliana GN=ATL33 PE=2
SV=2
Length = 235
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 43/68 (63%), Gaps = 5/68 (7%)
Query: 20 KYHKGT--GPVGDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHSNCPICR 77
K+HK T +G+E C+VCL F + +ELR L EC H++H CI+ WL H NCPICR
Sbjct: 128 KFHKDTHSKEIGNE---CSVCLMVFTDSDELRQLSECKHAFHVLCIETWLKDHPNCPICR 184
Query: 78 SDATPSPQ 85
+D + Q
Sbjct: 185 TDVSVKQQ 192
>sp|O64763|ATL9_ARATH E3 ubiquitin-protein ligase ATL9 OS=Arabidopsis thaliana GN=ATL9
PE=1 SV=1
Length = 378
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 4 TPSSIENSMAQLIPAHKYHKGTGPVGDEDGI-CAVCLSEFEEGEELRTLPECLHSYHAPC 62
T ++ + P Y + + G+ CAVCL EFE+ E LR +P C H +HA C
Sbjct: 103 TARGLDAEAIETFPTFLYSEVKAVRIGKGGVECAVCLCEFEDDETLRLMPPCCHVFHADC 162
Query: 63 IDMWLYSHSNCPICRSDATPSPQ 85
+D+WL HS CP+CR+D + Q
Sbjct: 163 VDVWLSEHSTCPLCRADLVLNQQ 185
>sp|Q940Q4|ATL13_ARATH RING-H2 finger protein ATL13 OS=Arabidopsis thaliana GN=ATL13 PE=2
SV=2
Length = 472
Score = 70.5 bits (171), Expect = 3e-12, Method: Composition-based stats.
Identities = 32/72 (44%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 6 SSIENSMAQLIPAHKYHKGTGPVGDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDM 65
S ++ S +P Y G + + CAVCL EFE ++LR LP+C H++H CID
Sbjct: 106 SGVDQSFIDTLPVFHYKSIIG-LKNYPFDCAVCLCEFETEDKLRLLPKCSHAFHMDCIDT 164
Query: 66 WLYSHSNCPICR 77
WL SHS CP+CR
Sbjct: 165 WLLSHSTCPLCR 176
>sp|Q9LY41|ATL4_ARATH E3 ubiquitin-protein ligase ATL4 OS=Arabidopsis thaliana GN=ATL4
PE=1 SV=1
Length = 334
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 3 ATPSSIENSMAQLIPAHKYHKGTGPVGD-EDGICAVCLSEFEEGEELRTLPECLHSYHAP 61
+P + +S+ +P K+ T G CAVCLS+FE ++LR LP C H++HA
Sbjct: 84 VSPETERSSVLDSLPIFKFSSVTRRSSSMNSGDCAVCLSKFEPEDQLRLLPLCCHAFHAD 143
Query: 62 CIDMWLYSHSNCPICRS 78
CID+WL S+ CP+CRS
Sbjct: 144 CIDIWLVSNQTCPLCRS 160
>sp|O64762|ATL38_ARATH RING-H2 finger protein ATL38 OS=Arabidopsis thaliana GN=ATL38 PE=2
SV=1
Length = 302
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 7 SIENSMAQLIPAHKYHKGTGPVGDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMW 66
+I NS + + + G G E CAVC+ EFE+ E LR +PEC H +HA C+ +W
Sbjct: 71 AIINSFPTFLYSEVKERRIGIGGVE---CAVCICEFEDHETLRLMPECCHVFHADCVSVW 127
Query: 67 LYSHSNCPICRSDATPSP 84
L HS CP+CR D P
Sbjct: 128 LSDHSTCPLCRVDLCLQP 145
>sp|Q9SJJ7|ATL57_ARATH RING-H2 finger protein ATL57 OS=Arabidopsis thaliana GN=ATL57 PE=2
SV=1
Length = 237
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 8 IENSMAQLIPAHKYHKGTGPVGDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWL 67
+++ + +P ++Y K ++ C +CLS+FEEGE ++ +P C H +H C+D WL
Sbjct: 116 LDSQAVRSLPVYRYTKAAKQRNED---CVICLSDFEEGETVKVIPHCGHVFHVDCVDTWL 172
Query: 68 YSHSNCPICRSDATPSPQIL 87
S+ CP+CRS+ S + L
Sbjct: 173 SSYVTCPLCRSNQLFSDKDL 192
>sp|Q5XIL0|RN167_RAT E3 ubiquitin-protein ligase RNF167 OS=Rattus norvegicus GN=Rnf167
PE=2 SV=1
Length = 349
Score = 70.1 bits (170), Expect = 4e-12, Method: Composition-based stats.
Identities = 32/70 (45%), Positives = 43/70 (61%), Gaps = 7/70 (10%)
Query: 16 IPAHKYHKGTGPVGDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWL-YSHSNCP 74
IP H Y KG DE +CA+CL E+E+G++LR LP C H+YH+ C+D WL + CP
Sbjct: 216 IPTHDYQKG-----DEYDVCAICLDEYEDGDKLRILP-CAHAYHSRCVDPWLTQTRKTCP 269
Query: 75 ICRSDATPSP 84
IC+ P
Sbjct: 270 ICKQPVHRGP 279
>sp|Q8RXX9|ATL6_ARATH E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana GN=ATL6
PE=1 SV=2
Length = 398
Score = 70.1 bits (170), Expect = 4e-12, Method: Composition-based stats.
Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 1 IDATPSSIENSMAQLIPAHKYHK-GTGPVGDEDGICAVCLSEFEEGEELRTLPECLHSYH 59
++A ++ S+ + P Y T +G + CA+CL+EFE+ E LR LP+C H +H
Sbjct: 93 VNAAARGLDVSVVETFPTFLYSDVKTQKLGKGELECAICLNEFEDDETLRLLPKCDHVFH 152
Query: 60 APCIDMWLYSHSNCPICRSD 79
CID WL +H CP+CR++
Sbjct: 153 PHCIDAWLEAHVTCPVCRAN 172
>sp|Q9LZV8|ATL74_ARATH RING-H2 finger protein ATL74 OS=Arabidopsis thaliana GN=ATL74 PE=2
SV=1
Length = 159
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 3 ATPSSIENSMAQLIPAHKYHKGTGPVGDEDGICAVCLSEFEEGEELRTLPECLHSYHAPC 62
A + ++ + P +Y G+G V CA+CL EF +GE +R LP C HS+H C
Sbjct: 75 ADRAGLKKRELKKFPVAEY--GSGEVKIAATECAICLGEFADGERVRVLPPCNHSFHMSC 132
Query: 63 IDMWLYSHSNCPICR 77
ID WL SHS+CP CR
Sbjct: 133 IDTWLVSHSSCPNCR 147
>sp|Q8GW38|ATL47_ARATH RING-H2 finger protein ATL47 OS=Arabidopsis thaliana GN=ATL47 PE=2
SV=1
Length = 369
Score = 69.7 bits (169), Expect = 5e-12, Method: Composition-based stats.
Identities = 33/74 (44%), Positives = 44/74 (59%), Gaps = 6/74 (8%)
Query: 6 SSIENSMAQLIPAHKYH--KGTGPVGDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCI 63
S ++ ++ +P Y KGT D CAVCL EF E ++LR LP C H++H CI
Sbjct: 117 SGLDQALIDALPVFLYKEIKGTKEPFD----CAVCLCEFSEDDKLRLLPNCSHAFHIDCI 172
Query: 64 DMWLYSHSNCPICR 77
D WL S+S CP+CR
Sbjct: 173 DTWLLSNSTCPLCR 186
>sp|Q9SL78|ATL12_ARATH Putative RING-H2 finger protein ATL12 OS=Arabidopsis thaliana
GN=ATL12 PE=3 SV=1
Length = 390
Score = 69.3 bits (168), Expect = 6e-12, Method: Composition-based stats.
Identities = 25/44 (56%), Positives = 34/44 (77%)
Query: 35 CAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHSNCPICRS 78
C+VCLS+FE+ E LR LP+C H++H CID WL H+ CP+CR+
Sbjct: 124 CSVCLSKFEDVEILRLLPKCRHAFHIGCIDQWLEQHATCPLCRN 167
>sp|Q9LSW9|ATL16_ARATH RING-H2 finger protein ATL16 OS=Arabidopsis thaliana GN=ATL16 PE=2
SV=1
Length = 375
Score = 68.9 bits (167), Expect = 7e-12, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 46/69 (66%), Gaps = 7/69 (10%)
Query: 35 CAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHSNCPICRSDAT-----PSPQILRP 89
C+VCLSEF++ E+LR +P C H +H CID+WL +++NCP+CR+ + P ++ P
Sbjct: 138 CSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNANCPLCRTRVSCDTSFPPDRVSAP 197
Query: 90 RDSAGPEDM 98
S PE++
Sbjct: 198 --STSPENL 204
>sp|O22755|ATL44_ARATH RING-H2 finger protein ATL44 OS=Arabidopsis thaliana GN=ATL44 PE=2
SV=1
Length = 185
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 35/48 (72%)
Query: 35 CAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHSNCPICRSDATP 82
CA+CL++F +GEE+R LP C HS+H CID WL S S+CP CR TP
Sbjct: 102 CAICLTDFADGEEIRVLPLCGHSFHVECIDKWLVSRSSCPSCRRILTP 149
>sp|Q8LC69|ATL8_ARATH RING-H2 finger protein ATL8 OS=Arabidopsis thaliana GN=ATL8 PE=2
SV=2
Length = 185
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 1 IDATPSSIENSMAQLIPAHKYHKGTGPVGDEDGICAVCLSEFEEGEELRTLPECLHSYHA 60
+ A ++ + + +P Y + P ++ CA+CL+EF G+ELR LP+C H +H
Sbjct: 71 VAAANKGLKKKVLRSLPKLTYSPDSPP-AEKLVECAICLTEFAAGDELRVLPQCGHGFHV 129
Query: 61 PCIDMWLYSHSNCPICR 77
CID WL SHS+CP CR
Sbjct: 130 SCIDTWLGSHSSCPSCR 146
>sp|P0C035|ATL60_ARATH RING-H2 finger protein ATL60 OS=Arabidopsis thaliana GN=ATL60 PE=2
SV=1
Length = 310
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 36/49 (73%), Gaps = 1/49 (2%)
Query: 31 EDGI-CAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHSNCPICRS 78
+DG+ CAVCLS+ +G++ R LP C H +H CIDMW SHS CP+CR+
Sbjct: 115 KDGLECAVCLSDLVDGDKARVLPRCNHGFHVDCIDMWFQSHSTCPLCRN 163
>sp|Q9SLC3|ATL41_ARATH E3 ubiquitin-protein ligase ATL41 OS=Arabidopsis thaliana GN=ATL41
PE=1 SV=1
Length = 236
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 47/85 (55%), Gaps = 7/85 (8%)
Query: 25 TGPVGDEDGI------CAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHSNCPICRS 78
T VG DG+ CAVCLS +E ++ R LP C H +H C+D WL + S CP+CR+
Sbjct: 92 TFTVGATDGVAASATECAVCLSVLKEQDKARELPNCKHIFHVDCVDTWLTTCSTCPVCRT 151
Query: 79 DATPSPQILRPRDSAGPEDMAAGMV 103
+ P P+ L P GP A ++
Sbjct: 152 EVEPRPR-LEPEPREGPVGTAPQLL 175
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,288,952
Number of Sequences: 539616
Number of extensions: 1860155
Number of successful extensions: 4184
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 169
Number of HSP's that attempted gapping in prelim test: 3656
Number of HSP's gapped (non-prelim): 563
length of query: 113
length of database: 191,569,459
effective HSP length: 81
effective length of query: 32
effective length of database: 147,860,563
effective search space: 4731538016
effective search space used: 4731538016
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)