Query 043177
Match_columns 113
No_of_seqs 135 out of 1302
Neff 8.8
Searched_HMMs 29240
Date Tue Mar 26 00:08:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043177.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043177hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.8 1.9E-19 6.4E-24 108.0 7.0 79 2-82 11-89 (91)
2 1x4j_A Ring finger protein 38; 99.7 1.2E-18 4E-23 100.8 3.3 69 12-83 5-73 (75)
3 2kiz_A E3 ubiquitin-protein li 99.7 3.6E-17 1.2E-21 92.9 6.7 57 26-83 8-64 (69)
4 2ep4_A Ring finger protein 24; 99.7 4.1E-17 1.4E-21 93.9 6.8 58 28-86 11-68 (74)
5 2ect_A Ring finger protein 126 99.7 4.1E-17 1.4E-21 94.8 6.1 61 28-89 11-71 (78)
6 1iym_A EL5; ring-H2 finger, ub 99.7 2.2E-17 7.6E-22 89.9 3.8 52 30-81 3-54 (55)
7 2ecl_A Ring-box protein 2; RNF 99.6 3.6E-16 1.2E-20 91.7 4.0 51 31-81 14-75 (81)
8 3ng2_A RNF4, snurf, ring finge 99.6 8.1E-16 2.8E-20 87.6 4.5 55 29-84 7-65 (71)
9 2ea6_A Ring finger protein 4; 99.6 1.7E-15 5.7E-20 85.7 4.9 54 28-82 11-68 (69)
10 2ecm_A Ring finger and CHY zin 99.6 1.5E-15 5E-20 82.5 4.2 51 30-81 3-54 (55)
11 2djb_A Polycomb group ring fin 99.6 6.4E-15 2.2E-19 84.3 7.0 57 28-87 11-67 (72)
12 1v87_A Deltex protein 2; ring- 99.6 7E-15 2.4E-19 90.9 6.2 51 32-83 25-95 (114)
13 2xeu_A Ring finger protein 4; 99.5 3.2E-15 1.1E-19 83.3 3.6 53 31-84 2-58 (64)
14 3dpl_R Ring-box protein 1; ubi 99.5 6.3E-15 2.2E-19 90.5 4.7 50 31-81 36-100 (106)
15 2d8t_A Dactylidin, ring finger 99.5 6.2E-15 2.1E-19 84.2 4.3 50 29-82 12-61 (71)
16 1chc_A Equine herpes virus-1 r 99.5 7.9E-15 2.7E-19 82.9 4.3 50 30-82 3-52 (68)
17 2csy_A Zinc finger protein 183 99.5 2.2E-14 7.5E-19 83.8 5.6 50 28-81 11-60 (81)
18 2ecn_A Ring finger protein 141 99.5 4.9E-15 1.7E-19 84.2 2.6 52 29-85 12-63 (70)
19 2ct2_A Tripartite motif protei 99.5 4.3E-14 1.5E-18 83.4 6.4 55 28-83 11-69 (88)
20 2ysl_A Tripartite motif-contai 99.5 4.9E-14 1.7E-18 80.5 6.4 51 29-83 17-70 (73)
21 2ecy_A TNF receptor-associated 99.5 4E-14 1.4E-18 79.6 5.7 51 29-83 12-63 (66)
22 2yur_A Retinoblastoma-binding 99.5 3.8E-14 1.3E-18 81.5 5.6 53 28-83 11-65 (74)
23 2d8s_A Cellular modulator of i 99.5 3.6E-14 1.2E-18 83.0 5.3 56 27-84 10-72 (80)
24 4ayc_A E3 ubiquitin-protein li 99.5 1E-14 3.5E-19 93.2 3.2 48 31-82 52-99 (138)
25 2ecw_A Tripartite motif-contai 99.5 1.4E-13 4.8E-18 80.5 7.0 51 29-83 16-72 (85)
26 1t1h_A Gspef-atpub14, armadill 99.5 7.3E-14 2.5E-18 80.9 5.2 51 29-83 5-56 (78)
27 2ecv_A Tripartite motif-contai 99.5 1.6E-13 5.5E-18 80.2 6.7 52 29-84 16-73 (85)
28 2egp_A Tripartite motif-contai 99.5 3.2E-14 1.1E-18 82.4 3.2 51 29-83 9-66 (79)
29 3lrq_A E3 ubiquitin-protein li 99.4 3.5E-14 1.2E-18 86.1 3.0 51 30-84 20-72 (100)
30 4a0k_B E3 ubiquitin-protein li 99.4 1.5E-14 5E-19 90.2 0.5 50 31-81 47-111 (117)
31 2ysj_A Tripartite motif-contai 99.4 2.6E-13 8.9E-18 75.5 5.6 45 28-76 16-63 (63)
32 4ap4_A E3 ubiquitin ligase RNF 99.4 9.2E-14 3.1E-18 87.4 3.8 55 30-85 5-63 (133)
33 3ztg_A E3 ubiquitin-protein li 99.4 4.5E-13 1.6E-17 79.8 6.3 52 27-81 8-61 (92)
34 1g25_A CDK-activating kinase a 99.4 3.3E-13 1.1E-17 75.6 4.8 52 32-84 3-57 (65)
35 2y43_A E3 ubiquitin-protein li 99.4 1.8E-13 6.1E-18 82.7 3.9 48 31-82 21-69 (99)
36 2ckl_A Polycomb group ring fin 99.4 2.4E-13 8.1E-18 83.4 4.4 50 30-83 13-63 (108)
37 3fl2_A E3 ubiquitin-protein li 99.4 3.8E-13 1.3E-17 84.3 4.8 49 30-82 50-99 (124)
38 1e4u_A Transcriptional repress 99.4 8.6E-13 3E-17 76.7 5.9 56 29-85 8-65 (78)
39 2ecj_A Tripartite motif-contai 99.4 4.7E-13 1.6E-17 73.1 4.2 44 29-76 12-58 (58)
40 2ct0_A Non-SMC element 1 homol 99.3 2.4E-12 8.2E-17 74.1 6.2 52 30-84 13-66 (74)
41 1jm7_A BRCA1, breast cancer ty 99.3 7.9E-13 2.7E-17 81.2 4.3 52 31-86 20-74 (112)
42 3hct_A TNF receptor-associated 99.3 1.4E-12 4.8E-17 81.2 4.7 51 28-82 14-65 (118)
43 2kre_A Ubiquitin conjugation f 99.3 1.4E-12 4.7E-17 79.2 4.1 51 29-83 26-76 (100)
44 2kr4_A Ubiquitin conjugation f 99.3 2.2E-12 7.5E-17 76.1 4.8 50 29-82 11-60 (85)
45 1z6u_A NP95-like ring finger p 99.3 1.8E-12 6.1E-17 84.0 4.8 49 31-83 77-126 (150)
46 2ckl_B Ubiquitin ligase protei 99.3 1E-12 3.5E-17 86.1 3.6 50 30-82 52-102 (165)
47 1rmd_A RAG1; V(D)J recombinati 99.3 6.8E-13 2.3E-17 82.2 2.6 51 30-84 21-72 (116)
48 4ap4_A E3 ubiquitin ligase RNF 99.3 1.4E-12 4.9E-17 81.9 3.6 54 29-83 69-126 (133)
49 3l11_A E3 ubiquitin-protein li 99.3 3.8E-13 1.3E-17 83.3 0.7 50 28-81 11-61 (115)
50 1wgm_A Ubiquitin conjugation f 99.3 7.2E-12 2.5E-16 75.8 5.5 51 29-83 19-70 (98)
51 2vje_A E3 ubiquitin-protein li 99.3 3.8E-12 1.3E-16 71.3 3.7 49 30-82 6-57 (64)
52 2vje_B MDM4 protein; proto-onc 99.2 4.5E-12 1.5E-16 70.8 3.2 51 29-81 4-55 (63)
53 2y1n_A E3 ubiquitin-protein li 99.2 1.3E-11 4.3E-16 90.5 4.5 49 32-84 332-381 (389)
54 1bor_A Transcription factor PM 99.2 4.7E-12 1.6E-16 69.0 1.6 47 30-83 4-50 (56)
55 3knv_A TNF receptor-associated 99.2 3.9E-12 1.3E-16 81.6 1.4 51 28-82 27-78 (141)
56 1jm7_B BARD1, BRCA1-associated 99.2 4.2E-12 1.4E-16 78.9 0.8 46 31-82 21-67 (117)
57 4ic3_A E3 ubiquitin-protein li 99.1 1.2E-11 4.1E-16 71.0 1.8 44 31-82 23-67 (74)
58 2yu4_A E3 SUMO-protein ligase 99.1 4.3E-11 1.5E-15 71.7 2.9 50 30-82 5-63 (94)
59 3hcs_A TNF receptor-associated 99.1 7.2E-11 2.5E-15 77.5 4.1 52 28-83 14-66 (170)
60 2c2l_A CHIP, carboxy terminus 99.1 7.6E-11 2.6E-15 82.2 4.4 52 28-83 204-256 (281)
61 2ea5_A Cell growth regulator w 99.0 2.2E-10 7.6E-15 64.7 4.4 51 27-85 10-61 (68)
62 3k1l_B Fancl; UBC, ring, RWD, 99.0 9.2E-11 3.1E-15 84.6 1.9 55 28-82 304-373 (381)
63 2ecg_A Baculoviral IAP repeat- 99.0 1.6E-10 5.4E-15 66.4 2.4 45 31-83 24-69 (75)
64 2f42_A STIP1 homology and U-bo 99.0 4.3E-10 1.5E-14 74.7 4.4 52 28-83 102-154 (179)
65 1wim_A KIAA0161 protein; ring 98.9 5.3E-10 1.8E-14 66.8 3.4 48 31-79 4-61 (94)
66 2yho_A E3 ubiquitin-protein li 98.9 1.7E-10 5.8E-15 67.1 1.0 47 31-85 17-64 (79)
67 1vyx_A ORF K3, K3RING; zinc-bi 98.9 1.9E-09 6.7E-14 59.4 4.4 49 29-81 3-58 (60)
68 3htk_C E3 SUMO-protein ligase 98.8 7.4E-09 2.5E-13 72.2 4.6 53 29-84 178-234 (267)
69 3t6p_A Baculoviral IAP repeat- 98.7 1.9E-09 6.6E-14 78.1 0.9 44 31-82 294-338 (345)
70 2bay_A PRE-mRNA splicing facto 98.7 8.2E-09 2.8E-13 57.1 2.6 51 33-86 4-54 (61)
71 3vk6_A E3 ubiquitin-protein li 98.4 2.8E-07 9.6E-12 55.2 4.1 47 34-83 3-50 (101)
72 3nw0_A Non-structural maintena 98.2 2.3E-06 7.7E-11 59.1 5.7 50 31-83 179-230 (238)
73 2jun_A Midline-1; B-BOX, TRIM, 96.7 0.0013 4.4E-08 39.0 3.0 35 31-66 2-36 (101)
74 2ko5_A Ring finger protein Z; 96.6 0.0021 7.2E-08 37.9 3.4 51 31-87 27-78 (99)
75 2lri_C Autoimmune regulator; Z 96.0 0.0092 3.1E-07 33.0 3.7 47 30-80 10-60 (66)
76 1wep_A PHF8; structural genomi 95.1 0.078 2.7E-06 30.0 5.6 53 27-80 7-64 (79)
77 1we9_A PHD finger family prote 94.5 0.016 5.4E-07 31.5 1.6 51 29-79 3-58 (64)
78 2vpb_A Hpygo1, pygopus homolog 94.1 0.048 1.6E-06 29.9 3.0 36 29-64 5-41 (65)
79 1wil_A KIAA1045 protein; ring 93.9 0.084 2.9E-06 30.5 3.8 35 30-66 13-47 (89)
80 2l5u_A Chromodomain-helicase-D 93.8 0.041 1.4E-06 29.7 2.4 46 29-78 8-57 (61)
81 3lqh_A Histone-lysine N-methyl 92.8 0.034 1.2E-06 36.7 1.2 48 33-80 3-64 (183)
82 1mm2_A MI2-beta; PHD, zinc fin 92.4 0.025 8.5E-07 30.6 0.0 48 29-80 6-57 (61)
83 2k16_A Transcription initiatio 92.3 0.063 2.2E-06 30.0 1.7 51 29-80 15-69 (75)
84 1f62_A Transcription factor WS 91.9 0.088 3E-06 27.1 1.9 44 34-78 2-49 (51)
85 2kgg_A Histone demethylase jar 91.6 0.15 5.3E-06 26.4 2.6 44 34-77 4-52 (52)
86 1fp0_A KAP-1 corepressor; PHD 90.9 0.21 7.3E-06 29.0 3.0 49 27-79 20-72 (88)
87 3u5n_A E3 ubiquitin-protein li 90.9 0.045 1.6E-06 36.5 0.1 48 29-80 4-55 (207)
88 3o36_A Transcription intermedi 89.9 0.053 1.8E-06 35.5 -0.3 47 31-81 3-53 (184)
89 3m62_A Ubiquitin conjugation f 89.9 0.33 1.1E-05 39.5 4.2 52 29-84 888-940 (968)
90 1wem_A Death associated transc 89.6 0.51 1.7E-05 26.3 3.8 49 29-79 13-70 (76)
91 2cs3_A Protein C14ORF4, MY039 89.5 0.47 1.6E-05 27.1 3.5 40 30-70 13-53 (93)
92 2yql_A PHD finger protein 21A; 88.8 0.024 8.3E-07 30.0 -2.1 34 28-65 5-38 (56)
93 1wen_A Inhibitor of growth fam 88.1 0.43 1.5E-05 26.5 2.7 47 29-80 13-66 (71)
94 2ysm_A Myeloid/lymphoid or mix 87.8 0.12 4.1E-06 31.0 0.3 38 29-67 4-41 (111)
95 2xb1_A Pygopus homolog 2, B-ce 87.3 0.23 7.7E-06 29.7 1.4 48 33-80 4-62 (105)
96 2lbm_A Transcriptional regulat 86.5 1.5 5.1E-05 27.7 4.9 46 29-78 60-116 (142)
97 2yt5_A Metal-response element- 86.4 0.3 1E-05 26.4 1.4 50 29-78 3-60 (66)
98 2lv9_A Histone-lysine N-methyl 86.4 0.25 8.6E-06 29.1 1.2 46 31-78 27-75 (98)
99 2l43_A N-teminal domain from h 86.3 0.89 3E-05 26.2 3.5 52 29-80 22-76 (88)
100 3v43_A Histone acetyltransfera 86.0 0.15 5.1E-06 30.8 0.0 45 34-78 63-111 (112)
101 2ku3_A Bromodomain-containing 84.9 1.3 4.5E-05 24.4 3.6 38 28-65 12-50 (71)
102 1weu_A Inhibitor of growth fam 84.4 0.67 2.3E-05 27.0 2.3 48 30-80 34-86 (91)
103 4gne_A Histone-lysine N-methyl 84.3 0.78 2.7E-05 27.5 2.7 50 26-81 9-64 (107)
104 2e6r_A Jumonji/ARID domain-con 84.1 0.07 2.4E-06 31.2 -2.0 51 27-78 11-65 (92)
105 1xwh_A Autoimmune regulator; P 83.7 0.074 2.5E-06 29.1 -1.9 45 30-78 6-54 (66)
106 2puy_A PHD finger protein 21A; 83.3 0.082 2.8E-06 28.3 -1.8 45 30-78 3-51 (60)
107 2ri7_A Nucleosome-remodeling f 83.1 0.83 2.8E-05 29.3 2.7 48 30-78 6-58 (174)
108 1z60_A TFIIH basal transcripti 82.9 1.2 3.9E-05 23.9 2.7 43 33-76 16-58 (59)
109 3v43_A Histone acetyltransfera 82.8 2.9 0.0001 24.9 4.9 34 31-64 4-42 (112)
110 1wew_A DNA-binding family prot 82.1 2 7E-05 23.9 3.8 49 30-79 14-72 (78)
111 3mjh_B Early endosome antigen 81.8 0.34 1.2E-05 23.0 0.3 15 30-44 3-17 (34)
112 1weo_A Cellulose synthase, cat 81.5 4.2 0.00015 23.6 4.9 52 31-82 15-70 (93)
113 3ql9_A Transcriptional regulat 81.4 3.2 0.00011 25.7 4.7 46 29-78 54-110 (129)
114 1wee_A PHD finger family prote 81.0 0.66 2.3E-05 25.5 1.4 49 29-78 13-65 (72)
115 1z2q_A LM5-1; membrane protein 80.2 1.1 3.8E-05 25.4 2.2 37 29-65 18-54 (84)
116 2yw8_A RUN and FYVE domain-con 79.6 1 3.4E-05 25.5 1.9 35 30-64 17-51 (82)
117 1joc_A EEA1, early endosomal a 79.3 0.92 3.1E-05 27.8 1.8 35 30-64 67-101 (125)
118 1wfk_A Zinc finger, FYVE domai 79.2 1.5 5.1E-05 25.2 2.5 37 29-65 6-42 (88)
119 3t7l_A Zinc finger FYVE domain 77.9 1.1 3.8E-05 25.8 1.8 36 30-65 18-53 (90)
120 2ro1_A Transcription intermedi 77.5 0.37 1.3E-05 31.7 -0.5 45 32-80 2-50 (189)
121 3i2d_A E3 SUMO-protein ligase 77.3 3.1 0.00011 30.3 4.2 48 32-82 249-300 (371)
122 3o70_A PHD finger protein 13; 75.9 1.1 3.9E-05 24.4 1.3 49 28-78 15-66 (68)
123 1vfy_A Phosphatidylinositol-3- 75.5 1.5 5.1E-05 24.2 1.7 32 33-64 12-43 (73)
124 1x4u_A Zinc finger, FYVE domai 75.3 1.4 4.9E-05 24.9 1.7 35 29-63 11-45 (84)
125 2d8v_A Zinc finger FYVE domain 75.2 1.8 6.2E-05 23.7 1.9 34 28-66 4-38 (67)
126 3c6w_A P28ING5, inhibitor of g 74.8 0.46 1.6E-05 25.3 -0.5 44 30-78 7-57 (59)
127 2ku7_A MLL1 PHD3-CYP33 RRM chi 73.8 8.8 0.0003 22.8 5.2 29 53-81 7-46 (140)
128 3zyq_A Hepatocyte growth facto 73.7 2.3 7.9E-05 28.6 2.7 34 31-64 163-196 (226)
129 4fo9_A E3 SUMO-protein ligase 73.7 5.2 0.00018 29.0 4.6 48 32-82 215-266 (360)
130 2vnf_A ING 4, P29ING4, inhibit 73.6 0.45 1.5E-05 25.4 -0.7 44 30-78 8-58 (60)
131 1dvp_A HRS, hepatocyte growth 72.6 1.3 4.4E-05 29.6 1.2 34 31-64 160-193 (220)
132 3kv5_D JMJC domain-containing 72.5 0.41 1.4E-05 36.1 -1.4 48 30-78 35-87 (488)
133 1zbd_B Rabphilin-3A; G protein 72.3 1.5 5E-05 27.3 1.3 34 30-64 53-88 (134)
134 1wev_A Riken cDNA 1110020M19; 72.3 0.64 2.2E-05 26.8 -0.3 52 30-81 14-74 (88)
135 2gmg_A Hypothetical protein PF 71.5 0.9 3.1E-05 27.2 0.2 28 53-85 72-99 (105)
136 3mpx_A FYVE, rhogef and PH dom 70.4 0.89 3.1E-05 33.1 0.0 38 30-67 373-410 (434)
137 3shb_A E3 ubiquitin-protein li 70.2 0.46 1.6E-05 26.8 -1.2 43 35-78 29-76 (77)
138 1y02_A CARP2, FYVE-ring finger 70.1 0.2 6.9E-06 30.8 -3.0 48 30-77 17-64 (120)
139 3asl_A E3 ubiquitin-protein li 69.9 0.69 2.4E-05 25.5 -0.5 44 34-78 20-68 (70)
140 2e6s_A E3 ubiquitin-protein li 69.8 0.69 2.4E-05 26.0 -0.6 44 34-78 28-76 (77)
141 2zet_C Melanophilin; complex, 67.1 2.5 8.4E-05 26.9 1.6 32 31-63 67-100 (153)
142 1x4k_A Skeletal muscle LIM-pro 66.9 3.3 0.00011 22.0 1.9 41 33-83 6-46 (72)
143 3kqi_A GRC5, PHD finger protei 66.3 7.4 0.00025 21.3 3.3 48 31-79 9-61 (75)
144 1wyh_A SLIM 2, skeletal muscle 63.3 2.5 8.4E-05 22.6 0.9 40 33-82 6-45 (72)
145 3a1b_A DNA (cytosine-5)-methyl 62.9 10 0.00035 24.3 3.8 36 29-68 76-113 (159)
146 1x63_A Skeletal muscle LIM-pro 61.0 5.4 0.00019 21.8 2.1 41 33-83 16-56 (82)
147 2jne_A Hypothetical protein YF 59.8 3.2 0.00011 24.5 1.0 42 31-81 31-72 (101)
148 2kwj_A Zinc finger protein DPF 58.4 3.1 0.00011 24.9 0.8 33 33-65 2-40 (114)
149 2o35_A Hypothetical protein DU 58.0 4.7 0.00016 23.9 1.5 11 58-68 43-53 (105)
150 3fyb_A Protein of unknown func 57.8 4.7 0.00016 23.8 1.5 11 58-68 42-52 (104)
151 1x61_A Thyroid receptor intera 55.3 5.2 0.00018 21.2 1.4 39 33-81 6-44 (72)
152 1g47_A Pinch protein; LIM doma 55.3 6.2 0.00021 21.2 1.7 41 32-82 11-51 (77)
153 3ask_A E3 ubiquitin-protein li 55.1 1.4 4.9E-05 29.9 -1.2 44 34-78 176-224 (226)
154 1iml_A CRIP, cysteine rich int 54.8 3 0.0001 22.6 0.3 11 34-44 29-39 (76)
155 2cu8_A Cysteine-rich protein 2 54.5 3.3 0.00011 22.4 0.4 40 32-82 9-48 (76)
156 1x4l_A Skeletal muscle LIM-pro 54.3 4.2 0.00014 21.7 0.9 39 33-81 6-46 (72)
157 1x4i_A Inhibitor of growth pro 52.8 15 0.00053 19.9 3.0 47 30-79 4-55 (70)
158 3f6q_B LIM and senescent cell 52.7 4.9 0.00017 21.1 1.0 42 32-83 11-52 (72)
159 2co8_A NEDD9 interacting prote 52.6 8.7 0.0003 21.1 2.0 43 31-84 14-56 (82)
160 2lq6_A Bromodomain-containing 52.5 9.2 0.00031 21.8 2.1 34 32-66 17-51 (87)
161 2jrp_A Putative cytoplasmic pr 51.5 9.5 0.00032 21.6 2.0 12 33-44 3-14 (81)
162 2pv0_B DNA (cytosine-5)-methyl 51.3 14 0.00048 27.0 3.4 46 30-79 91-148 (386)
163 1x68_A FHL5 protein; four-and- 50.4 5.5 0.00019 21.5 0.9 39 33-81 6-46 (76)
164 2a20_A Regulating synaptic mem 49.5 6.9 0.00024 20.9 1.1 16 30-45 7-23 (62)
165 1m3v_A FLIN4, fusion of the LI 49.5 16 0.00055 21.6 3.1 50 33-84 33-83 (122)
166 2jmi_A Protein YNG1, ING1 homo 49.4 4.3 0.00015 23.4 0.4 46 29-77 23-74 (90)
167 2dj7_A Actin-binding LIM prote 48.2 7 0.00024 21.5 1.1 40 31-81 14-53 (80)
168 1zfo_A LAsp-1; LIM domain, zin 46.4 4 0.00014 18.5 -0.1 27 33-62 4-30 (31)
169 1x62_A C-terminal LIM domain p 45.8 11 0.00036 20.5 1.7 39 31-81 14-52 (79)
170 2d8y_A Eplin protein; LIM doma 45.8 16 0.00055 20.3 2.5 42 31-83 14-55 (91)
171 1x64_A Alpha-actinin-2 associa 44.6 28 0.00097 19.1 3.4 42 30-83 23-64 (89)
172 2cup_A Skeletal muscle LIM-pro 41.0 19 0.00066 20.2 2.4 25 55-81 53-77 (101)
173 2ehe_A Four and A half LIM dom 40.8 8.3 0.00028 21.0 0.7 39 33-81 16-54 (82)
174 2l3k_A Rhombotin-2, linker, LI 40.8 5.4 0.00018 23.9 -0.1 34 32-67 36-69 (123)
175 2jvx_A NF-kappa-B essential mo 40.6 7.1 0.00024 17.5 0.3 10 72-81 5-14 (28)
176 2jmo_A Parkin; IBR, E3 ligase, 40.3 1.3 4.4E-05 24.9 -2.8 35 32-66 25-68 (80)
177 2cor_A Pinch protein; LIM doma 40.0 17 0.00059 19.7 2.0 41 31-83 14-54 (79)
178 1nyp_A Pinch protein; LIM doma 39.6 8.7 0.0003 19.9 0.6 38 33-82 6-43 (66)
179 2g6q_A Inhibitor of growth pro 39.1 8.2 0.00028 20.5 0.4 46 30-78 9-59 (62)
180 2egq_A FHL1 protein; LIM domai 38.0 10 0.00035 20.3 0.8 40 33-82 16-58 (77)
181 1a7i_A QCRP2 (LIM1); LIM domai 37.9 3.9 0.00013 22.4 -1.1 40 32-82 7-46 (81)
182 2d8z_A Four and A half LIM dom 37.0 9.7 0.00033 20.0 0.5 37 33-81 6-42 (70)
183 2d8x_A Protein pinch; LIM doma 36.5 14 0.00046 19.4 1.1 40 32-83 5-44 (70)
184 2xjy_A Rhombotin-2; oncoprotei 36.4 20 0.00069 21.2 2.0 49 32-82 29-78 (131)
185 2csz_A Synaptotagmin-like prot 36.0 17 0.00059 20.3 1.5 34 29-62 22-56 (76)
186 2cur_A Skeletal muscle LIM-pro 34.9 13 0.00046 19.4 0.9 37 33-81 6-42 (69)
187 3kv4_A PHD finger protein 8; e 34.9 27 0.00093 26.0 2.8 46 34-79 6-56 (447)
188 2dar_A PDZ and LIM domain prot 34.7 11 0.00037 21.0 0.5 40 31-82 24-63 (90)
189 2kpi_A Uncharacterized protein 33.6 20 0.00068 18.6 1.4 14 31-44 9-22 (56)
190 2l4z_A DNA endonuclease RBBP8, 32.4 9.1 0.00031 23.0 -0.1 39 32-81 61-99 (123)
191 1v6g_A Actin binding LIM prote 32.0 19 0.00066 19.4 1.3 39 33-83 16-54 (81)
192 2iyb_E Testin, TESS, TES; LIM 30.5 13 0.00046 19.2 0.4 38 34-81 4-43 (65)
193 1wd2_A Ariadne-1 protein homol 30.4 18 0.00062 19.0 0.9 14 70-83 6-19 (60)
194 3o7a_A PHD finger protein 13 v 30.1 15 0.0005 18.5 0.5 41 37-78 8-51 (52)
195 1rut_X Flinc4, fusion protein 30.1 26 0.00089 22.4 1.8 27 55-81 54-80 (188)
196 1wig_A KIAA1808 protein; LIM d 29.3 21 0.00073 19.0 1.1 37 33-81 6-42 (73)
197 2rsd_A E3 SUMO-protein ligase 27.0 26 0.00089 18.6 1.2 33 31-64 9-42 (68)
198 2ct7_A Ring finger protein 31; 26.6 2.5 8.5E-05 24.0 -3.2 32 35-66 28-61 (86)
199 2pk7_A Uncharacterized protein 25.4 19 0.00067 19.5 0.5 15 67-81 5-19 (69)
200 2das_A Zinc finger MYM-type pr 24.7 87 0.003 16.6 4.3 36 31-66 19-55 (62)
201 2dlo_A Thyroid receptor-intera 24.3 26 0.00089 18.9 0.9 39 32-82 15-53 (81)
202 2ffw_A Midline-1; B-BOX, ring 24.3 94 0.0032 16.8 4.0 35 30-65 28-62 (78)
203 3pwf_A Rubrerythrin; non heme 24.3 39 0.0013 21.6 1.8 22 51-79 141-162 (170)
204 1x3h_A Leupaxin; paxillin fami 24.2 25 0.00084 18.8 0.8 39 33-83 16-54 (80)
205 2cuq_A Four and A half LIM dom 23.5 27 0.00092 18.7 0.9 37 33-81 16-52 (80)
206 1j2o_A FLIN2, fusion of rhombo 22.7 37 0.0013 19.7 1.4 35 32-68 30-65 (114)
207 2akl_A PHNA-like protein PA012 21.7 37 0.0012 21.1 1.2 30 27-56 22-52 (138)
208 2jr6_A UPF0434 protein NMA0874 20.5 34 0.0012 18.5 0.9 12 70-81 8-19 (68)
209 1l8d_A DNA double-strand break 20.4 22 0.00075 20.7 0.0 12 70-81 47-58 (112)
210 2hf1_A Tetraacyldisaccharide-1 20.2 34 0.0012 18.5 0.8 10 72-81 10-19 (68)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.79 E-value=1.9e-19 Score=107.95 Aligned_cols=79 Identities=27% Similarity=0.696 Sum_probs=68.0
Q ss_pred CCCCCCchHHHHhhcCCccccCCCCCCCCccccccccccccccCCeeeecCCCCCcchHHHHHHHHhcCCCCCCCCCCCC
Q 043177 2 DATPSSIENSMAQLIPAHKYHKGTGPVGDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHSNCPICRSDAT 81 (113)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 81 (113)
.+++.+++.+.+..||...+..... ..+++..|+||++.|..+..+..++ |+|.||..||..|+..+.+||+||..+.
T Consensus 11 ~~~~~~~s~~~i~~lp~~~~~~~~~-~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 11 MVANPPASKESIDALPEILVTEDHG-AVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp SSCCCCCCHHHHHTSCEEECCTTCS-SSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred CcCCCCCCHHHHHhCCCeeeccccc-ccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 3567889999999999998876543 3456678999999999888888898 9999999999999999999999999875
Q ss_pred C
Q 043177 82 P 82 (113)
Q Consensus 82 ~ 82 (113)
.
T Consensus 89 ~ 89 (91)
T 2l0b_A 89 P 89 (91)
T ss_dssp C
T ss_pred C
Confidence 4
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.2e-18 Score=100.81 Aligned_cols=69 Identities=39% Similarity=0.963 Sum_probs=56.9
Q ss_pred HHhhcCCccccCCCCCCCCccccccccccccccCCeeeecCCCCCcchHHHHHHHHhcCCCCCCCCCCCCCC
Q 043177 12 MAQLIPAHKYHKGTGPVGDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHSNCPICRSDATPS 83 (113)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 83 (113)
.+..++...+.... ..+++..|+||++.|..+..+..++ |+|.||..|+..|+..+.+||+||..+...
T Consensus 5 ~i~~lp~~~~~~~~--~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 5 SSGQLPSYRFNPNN--HQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp CCSSCCCEEBCSSS--CSSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred hHhhCCcEEecCcc--ccCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 34567777775543 3456678999999999888888898 999999999999999999999999988653
No 3
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.70 E-value=3.6e-17 Score=92.94 Aligned_cols=57 Identities=46% Similarity=1.098 Sum_probs=48.7
Q ss_pred CCCCCccccccccccccccCCeeeecCCCCCcchHHHHHHHHhcCCCCCCCCCCCCCC
Q 043177 26 GPVGDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHSNCPICRSDATPS 83 (113)
Q Consensus 26 ~~~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 83 (113)
....+++..|+||++.|..+..+..++ |||.||..|+..|+..+.+||+||..+...
T Consensus 8 ~~~~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 8 GTEEDTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp CCSTTCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred cCcCCCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 334556778999999998777788888 999999999999999899999999988653
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=4.1e-17 Score=93.91 Aligned_cols=58 Identities=33% Similarity=0.776 Sum_probs=49.7
Q ss_pred CCCccccccccccccccCCeeeecCCCCCcchHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 043177 28 VGDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHSNCPICRSDATPSPQI 86 (113)
Q Consensus 28 ~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~~ 86 (113)
...++..|+||++.|..+..+..++ |+|.||..||..|+..+.+||+||..+......
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 68 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQL 68 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSSCCSC
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCccccccccc
Confidence 3455678999999999888788888 999999999999999888999999988765443
No 5
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.69 E-value=4.1e-17 Score=94.80 Aligned_cols=61 Identities=36% Similarity=0.803 Sum_probs=51.6
Q ss_pred CCCccccccccccccccCCeeeecCCCCCcchHHHHHHHHhcCCCCCCCCCCCCCCCCCCCC
Q 043177 28 VGDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHSNCPICRSDATPSPQILRP 89 (113)
Q Consensus 28 ~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~~~~~ 89 (113)
...++..|+||++.|..+..+..++ |+|.||..||..|+....+||+||..+........+
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 71 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATNP 71 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCCCC
T ss_pred cCCCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCcccCCCC
Confidence 3456778999999998877777888 999999999999999889999999999776554443
No 6
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.68 E-value=2.2e-17 Score=89.85 Aligned_cols=52 Identities=58% Similarity=1.189 Sum_probs=45.7
Q ss_pred CccccccccccccccCCeeeecCCCCCcchHHHHHHHHhcCCCCCCCCCCCC
Q 043177 30 DEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHSNCPICRSDAT 81 (113)
Q Consensus 30 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 81 (113)
+++..|+||++.+..+..+..++.|||.||..|+..|++.+.+||+||..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 4566899999999987777777669999999999999999999999998764
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=3.6e-16 Score=91.70 Aligned_cols=51 Identities=29% Similarity=0.798 Sum_probs=40.7
Q ss_pred cccccccccccccc-----------CCeeeecCCCCCcchHHHHHHHHhcCCCCCCCCCCCC
Q 043177 31 EDGICAVCLSEFEE-----------GEELRTLPECLHSYHAPCIDMWLYSHSNCPICRSDAT 81 (113)
Q Consensus 31 ~~~~C~IC~~~~~~-----------~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 81 (113)
++..|+||++.|.. ++.+..++.|+|.||..||..|+..+.+||+||..+.
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 45578888888854 3334455459999999999999999999999999875
No 8
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.60 E-value=8.1e-16 Score=87.56 Aligned_cols=55 Identities=20% Similarity=0.518 Sum_probs=45.6
Q ss_pred CCccccccccccccccC----CeeeecCCCCCcchHHHHHHHHhcCCCCCCCCCCCCCCC
Q 043177 29 GDEDGICAVCLSEFEEG----EELRTLPECLHSYHAPCIDMWLYSHSNCPICRSDATPSP 84 (113)
Q Consensus 29 ~~~~~~C~IC~~~~~~~----~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 84 (113)
.+++..|+||++.+..+ ..+..++ |||.||..|+..|+..+.+||+||..+....
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR 65 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCCS
T ss_pred CCCCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChhh
Confidence 45677899999998763 3445666 9999999999999999999999999887544
No 9
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=1.7e-15 Score=85.67 Aligned_cols=54 Identities=20% Similarity=0.520 Sum_probs=44.5
Q ss_pred CCCccccccccccccccC----CeeeecCCCCCcchHHHHHHHHhcCCCCCCCCCCCCC
Q 043177 28 VGDEDGICAVCLSEFEEG----EELRTLPECLHSYHAPCIDMWLYSHSNCPICRSDATP 82 (113)
Q Consensus 28 ~~~~~~~C~IC~~~~~~~----~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 82 (113)
...++..|+||++.+..+ ..+..++ |||.||..|+..|+.....||+||..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 345677899999998763 2335666 99999999999999989999999998753
No 10
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.58 E-value=1.5e-15 Score=82.48 Aligned_cols=51 Identities=25% Similarity=0.668 Sum_probs=42.6
Q ss_pred CccccccccccccccCC-eeeecCCCCCcchHHHHHHHHhcCCCCCCCCCCCC
Q 043177 30 DEDGICAVCLSEFEEGE-ELRTLPECLHSYHAPCIDMWLYSHSNCPICRSDAT 81 (113)
Q Consensus 30 ~~~~~C~IC~~~~~~~~-~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 81 (113)
.++..|+||++.+.++. .+..++ |+|.||..|+..|+....+||+||..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 34568999999986543 456676 9999999999999988899999998764
No 11
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=6.4e-15 Score=84.32 Aligned_cols=57 Identities=19% Similarity=0.477 Sum_probs=46.1
Q ss_pred CCCccccccccccccccCCeeeecCCCCCcchHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q 043177 28 VGDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHSNCPICRSDATPSPQIL 87 (113)
Q Consensus 28 ~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~~~ 87 (113)
..+++..|+||++.+.++ +..++ |||.||..||..|+.....||+||..+.......
T Consensus 11 ~~~~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 67 (72)
T 2djb_A 11 ELTPYILCSICKGYLIDA--TTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLS 67 (72)
T ss_dssp CCCGGGSCTTTSSCCSSC--EECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCC
T ss_pred hcCCCCCCCCCChHHHCc--CEECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCcccccc
Confidence 345677999999999863 32336 9999999999999988899999999987655443
No 12
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.55 E-value=7e-15 Score=90.93 Aligned_cols=51 Identities=20% Similarity=0.524 Sum_probs=40.2
Q ss_pred cccccccccccccCC---------------eeeecCCCCCcchHHHHHHHHh-----cCCCCCCCCCCCCCC
Q 043177 32 DGICAVCLSEFEEGE---------------ELRTLPECLHSYHAPCIDMWLY-----SHSNCPICRSDATPS 83 (113)
Q Consensus 32 ~~~C~IC~~~~~~~~---------------~~~~l~~C~H~fh~~Ci~~wl~-----~~~~CP~Cr~~~~~~ 83 (113)
+..|+||++.|..+. .+..++ |+|.||..||..|+. ...+||+||..+...
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 458999999996543 233566 999999999999993 456899999988644
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.54 E-value=3.2e-15 Score=83.34 Aligned_cols=53 Identities=21% Similarity=0.531 Sum_probs=43.8
Q ss_pred ccccccccccccccC----CeeeecCCCCCcchHHHHHHHHhcCCCCCCCCCCCCCCC
Q 043177 31 EDGICAVCLSEFEEG----EELRTLPECLHSYHAPCIDMWLYSHSNCPICRSDATPSP 84 (113)
Q Consensus 31 ~~~~C~IC~~~~~~~----~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 84 (113)
++..|+||++.+..+ ..+..++ |||.||..|+..|+..+..||+||..+....
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR 58 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTTTC
T ss_pred CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCccc
Confidence 356899999998753 3345666 9999999999999998999999999886543
No 14
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.53 E-value=6.3e-15 Score=90.51 Aligned_cols=50 Identities=24% Similarity=0.517 Sum_probs=41.6
Q ss_pred ccccccccccccccCC---------------eeeecCCCCCcchHHHHHHHHhcCCCCCCCCCCCC
Q 043177 31 EDGICAVCLSEFEEGE---------------ELRTLPECLHSYHAPCIDMWLYSHSNCPICRSDAT 81 (113)
Q Consensus 31 ~~~~C~IC~~~~~~~~---------------~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 81 (113)
++..|+||++.|.... .+..++ |+|.||..||..|+..+.+||+||..+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 4568999999987541 245566 9999999999999999999999999763
No 15
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=6.2e-15 Score=84.15 Aligned_cols=50 Identities=24% Similarity=0.543 Sum_probs=43.1
Q ss_pred CCccccccccccccccCCeeeecCCCCCcchHHHHHHHHhcCCCCCCCCCCCCC
Q 043177 29 GDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHSNCPICRSDATP 82 (113)
Q Consensus 29 ~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 82 (113)
..++..|+||++.+.+ ...++ |||.||..|+..|+.....||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 12 SLTVPECAICLQTCVH---PVSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSSCCBCSSSSSBCSS---EEEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCCccCCcccCC---CEEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 4556789999999876 45667 99999999999999888999999998864
No 16
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.53 E-value=7.9e-15 Score=82.86 Aligned_cols=50 Identities=28% Similarity=0.787 Sum_probs=42.6
Q ss_pred CccccccccccccccCCeeeecCCCCCcchHHHHHHHHhcCCCCCCCCCCCCC
Q 043177 30 DEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHSNCPICRSDATP 82 (113)
Q Consensus 30 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 82 (113)
+++..|+||++.+.++ +..++ |||.||..|+..|+..+.+||+||..+..
T Consensus 3 ~~~~~C~IC~~~~~~~--~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPSNY--SMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCCSC--EEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCCeeCCccccCC--cEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 4566899999998753 45677 99999999999999988999999998864
No 17
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=2.2e-14 Score=83.77 Aligned_cols=50 Identities=18% Similarity=0.401 Sum_probs=43.0
Q ss_pred CCCccccccccccccccCCeeeecCCCCCcchHHHHHHHHhcCCCCCCCCCCCC
Q 043177 28 VGDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHSNCPICRSDAT 81 (113)
Q Consensus 28 ~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 81 (113)
...+...|+||++.+.. ...++ |||.||..|+..|+.....||+||..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQN---PVVTK-CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCCCSBCSSSCSBCCS---EEECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred cCCCCCCCcCCCchhcC---eeEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 34556789999999976 44677 9999999999999998889999999885
No 18
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=4.9e-15 Score=84.21 Aligned_cols=52 Identities=37% Similarity=0.859 Sum_probs=44.1
Q ss_pred CCccccccccccccccCCeeeecCCCCCcchHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 043177 29 GDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHSNCPICRSDATPSPQ 85 (113)
Q Consensus 29 ~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~ 85 (113)
..++..|+||++.+.. ..++ |+|.||..|+..|+.....||+||..+.....
T Consensus 12 ~~~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 63 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGANE 63 (70)
T ss_dssp CCCCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCCCC
T ss_pred CCCCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCCCc
Confidence 3456789999999876 5666 99999999999999988999999998875543
No 19
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=4.3e-14 Score=83.38 Aligned_cols=55 Identities=25% Similarity=0.522 Sum_probs=45.0
Q ss_pred CCCccccccccccccccCCe-eeecCCCCCcchHHHHHHHHhcC---CCCCCCCCCCCCC
Q 043177 28 VGDEDGICAVCLSEFEEGEE-LRTLPECLHSYHAPCIDMWLYSH---SNCPICRSDATPS 83 (113)
Q Consensus 28 ~~~~~~~C~IC~~~~~~~~~-~~~l~~C~H~fh~~Ci~~wl~~~---~~CP~Cr~~~~~~ 83 (113)
...+...|+||++.|..... +..++ |||.||..|+..|+... ..||+||..+...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred hccCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 34567789999999987553 56677 99999999999999765 6899999987543
No 20
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=4.9e-14 Score=80.53 Aligned_cols=51 Identities=25% Similarity=0.622 Sum_probs=42.2
Q ss_pred CCccccccccccccccCCeeeecCCCCCcchHHHHHHHHh---cCCCCCCCCCCCCCC
Q 043177 29 GDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLY---SHSNCPICRSDATPS 83 (113)
Q Consensus 29 ~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~---~~~~CP~Cr~~~~~~ 83 (113)
..++..|+||++.+.+ ...++ |||.||..|+..|+. ....||+||..+...
T Consensus 17 ~~~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 17 LQEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCCBCTTTCSBCSS---EEECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred CccCCEeccCCcccCC---eEEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 4567799999999886 45666 999999999999996 455799999988654
No 21
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=4e-14 Score=79.60 Aligned_cols=51 Identities=18% Similarity=0.450 Sum_probs=42.1
Q ss_pred CCccccccccccccccCCeeeecCCCCCcchHHHHHHHH-hcCCCCCCCCCCCCCC
Q 043177 29 GDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWL-YSHSNCPICRSDATPS 83 (113)
Q Consensus 29 ~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl-~~~~~CP~Cr~~~~~~ 83 (113)
..++..|+||++.+.++ ..++ |||.||..|+..|+ .....||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSP---KQTE-CGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCCCEECTTTCCEESSC---CCCS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CCcCCCCCCCChHhcCe---eECC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 35677899999999874 3356 99999999999999 4567899999988654
No 22
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.50 E-value=3.8e-14 Score=81.55 Aligned_cols=53 Identities=23% Similarity=0.582 Sum_probs=42.4
Q ss_pred CCCccccccccccccccCCeeeecCCCCCcchHHHHHHHHhcC--CCCCCCCCCCCCC
Q 043177 28 VGDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSH--SNCPICRSDATPS 83 (113)
Q Consensus 28 ~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~--~~CP~Cr~~~~~~ 83 (113)
...++..|+||++.|.++ ..++.|||.||..||..|+... ..||+||..+...
T Consensus 11 ~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2yur_A 11 PIPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP 65 (74)
T ss_dssp CSCGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCT
T ss_pred cCCCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCc
Confidence 345677999999999873 4454599999999999999755 5899999976443
No 23
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=3.6e-14 Score=83.04 Aligned_cols=56 Identities=25% Similarity=0.645 Sum_probs=44.4
Q ss_pred CCCCccccccccccccccCCeeeecCCCC-----CcchHHHHHHHHhcC--CCCCCCCCCCCCCC
Q 043177 27 PVGDEDGICAVCLSEFEEGEELRTLPECL-----HSYHAPCIDMWLYSH--SNCPICRSDATPSP 84 (113)
Q Consensus 27 ~~~~~~~~C~IC~~~~~~~~~~~~l~~C~-----H~fh~~Ci~~wl~~~--~~CP~Cr~~~~~~~ 84 (113)
....++..|.||++.+..+..+ .+| |+ |.||..||.+|+..+ .+||+||..+....
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 10 ITPSSQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp CCCTTSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 3445567899999999766554 577 86 999999999999655 48999999886544
No 24
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.49 E-value=1e-14 Score=93.22 Aligned_cols=48 Identities=38% Similarity=0.850 Sum_probs=42.0
Q ss_pred ccccccccccccccCCeeeecCCCCCcchHHHHHHHHhcCCCCCCCCCCCCC
Q 043177 31 EDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHSNCPICRSDATP 82 (113)
Q Consensus 31 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 82 (113)
++..|+||++.|.+ ++.++ |||.||..||..|+....+||+||..+..
T Consensus 52 ~~~~C~iC~~~~~~---~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 52 NELQCIICSEYFIE---AVTLN-CAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HHSBCTTTCSBCSS---EEEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred ccCCCcccCcccCC---ceECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 45679999999976 45677 99999999999999999999999998854
No 25
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.47 E-value=1.4e-13 Score=80.46 Aligned_cols=51 Identities=31% Similarity=0.650 Sum_probs=42.6
Q ss_pred CCccccccccccccccCCeeeecCCCCCcchHHHHHHHHhc------CCCCCCCCCCCCCC
Q 043177 29 GDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYS------HSNCPICRSDATPS 83 (113)
Q Consensus 29 ~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~------~~~CP~Cr~~~~~~ 83 (113)
..++..|+||++.+..+ ..++ |||.||..|+..|+.. ...||+||..+...
T Consensus 16 ~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEP---VSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp CCTTTSCTTTCSCCSSC---EECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred CccCCCCcCCChhhCcc---eeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 45677899999999873 4666 9999999999999976 66799999988654
No 26
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.46 E-value=7.3e-14 Score=80.88 Aligned_cols=51 Identities=20% Similarity=0.363 Sum_probs=43.0
Q ss_pred CCccccccccccccccCCeeeecCCCCCcchHHHHHHHHhc-CCCCCCCCCCCCCC
Q 043177 29 GDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYS-HSNCPICRSDATPS 83 (113)
Q Consensus 29 ~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~~~~~ 83 (113)
..++..|+||++.|.+ ...++ |||.||..||..|+.. ..+||+||..+...
T Consensus 5 ~~~~~~C~IC~~~~~~---Pv~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 5 FPEYFRCPISLELMKD---PVIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp CSSSSSCTTTSCCCSS---EEEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred CcccCCCCCccccccC---CEEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 3557789999999987 45567 9999999999999976 77899999988654
No 27
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=1.6e-13 Score=80.21 Aligned_cols=52 Identities=29% Similarity=0.654 Sum_probs=43.1
Q ss_pred CCccccccccccccccCCeeeecCCCCCcchHHHHHHHHhc------CCCCCCCCCCCCCCC
Q 043177 29 GDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYS------HSNCPICRSDATPSP 84 (113)
Q Consensus 29 ~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~------~~~CP~Cr~~~~~~~ 84 (113)
..++..|+||++.+.. ...++ |||.||..|+..|+.. ...||+||..+....
T Consensus 16 ~~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQ---PLSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN 73 (85)
T ss_dssp CCCCCCCTTTCSCCSS---CBCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred ccCCCCCCCCCcccCC---ceeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence 4556789999999976 34566 9999999999999976 678999999887543
No 28
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.46 E-value=3.2e-14 Score=82.44 Aligned_cols=51 Identities=29% Similarity=0.574 Sum_probs=42.2
Q ss_pred CCccccccccccccccCCeeeecCCCCCcchHHHHHHHHhc-------CCCCCCCCCCCCCC
Q 043177 29 GDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYS-------HSNCPICRSDATPS 83 (113)
Q Consensus 29 ~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-------~~~CP~Cr~~~~~~ 83 (113)
..++..|+||++.|.++ ..++ |||.||..|+..|+.. ...||+||..+...
T Consensus 9 ~~~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 9 VQEEVTCPICLELLTEP---LSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCCCEETTTTEECSSC---CCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred cccCCCCcCCCcccCCe---eECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 35677899999999873 4466 9999999999999965 56799999988653
No 29
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.44 E-value=3.5e-14 Score=86.15 Aligned_cols=51 Identities=25% Similarity=0.597 Sum_probs=42.5
Q ss_pred CccccccccccccccCCeeee-cCCCCCcchHHHHHHHHhcC-CCCCCCCCCCCCCC
Q 043177 30 DEDGICAVCLSEFEEGEELRT-LPECLHSYHAPCIDMWLYSH-SNCPICRSDATPSP 84 (113)
Q Consensus 30 ~~~~~C~IC~~~~~~~~~~~~-l~~C~H~fh~~Ci~~wl~~~-~~CP~Cr~~~~~~~ 84 (113)
.++..|+||++.|.. .+. ++ |||.||..||..|+... ..||+||..+....
T Consensus 20 ~~~~~C~IC~~~~~~---p~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (100)
T 3lrq_A 20 AEVFRCFICMEKLRD---ARLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRE 72 (100)
T ss_dssp HHHTBCTTTCSBCSS---EEECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCCccCCccccC---ccccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCHHH
Confidence 456789999999976 445 66 99999999999999877 68999999986543
No 30
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.43 E-value=1.5e-14 Score=90.23 Aligned_cols=50 Identities=24% Similarity=0.517 Sum_probs=1.0
Q ss_pred ccccccccccccccCC---------------eeeecCCCCCcchHHHHHHHHhcCCCCCCCCCCCC
Q 043177 31 EDGICAVCLSEFEEGE---------------ELRTLPECLHSYHAPCIDMWLYSHSNCPICRSDAT 81 (113)
Q Consensus 31 ~~~~C~IC~~~~~~~~---------------~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 81 (113)
++..|+||++.|.... .+..++ |+|.||..||..|+..+.+||+||.++.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~-C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCC-cCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 4568999999997521 222345 9999999999999999999999999864
No 31
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=2.6e-13 Score=75.51 Aligned_cols=45 Identities=29% Similarity=0.656 Sum_probs=37.2
Q ss_pred CCCccccccccccccccCCeeeecCCCCCcchHHHHHHHHh---cCCCCCCC
Q 043177 28 VGDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLY---SHSNCPIC 76 (113)
Q Consensus 28 ~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~---~~~~CP~C 76 (113)
...++..|+||++.+.+ ...++ |||.||..||..|+. ....||+|
T Consensus 16 ~~~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSS---CEECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCC---eEEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 34567799999999986 44566 999999999999997 45579998
No 32
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.42 E-value=9.2e-14 Score=87.41 Aligned_cols=55 Identities=20% Similarity=0.518 Sum_probs=45.9
Q ss_pred CccccccccccccccC----CeeeecCCCCCcchHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 043177 30 DEDGICAVCLSEFEEG----EELRTLPECLHSYHAPCIDMWLYSHSNCPICRSDATPSPQ 85 (113)
Q Consensus 30 ~~~~~C~IC~~~~~~~----~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~ 85 (113)
.++..|+||++.|.++ ..+..++ |||.||..||..|+..+.+||+||..+.....
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l 63 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 63 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCE
T ss_pred CCCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCccccc
Confidence 4567899999999763 3446676 99999999999999999999999998876544
No 33
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.41 E-value=4.5e-13 Score=79.77 Aligned_cols=52 Identities=23% Similarity=0.584 Sum_probs=41.7
Q ss_pred CCCCccccccccccccccCCeeeecCCCCCcchHHHHHHHHhcC--CCCCCCCCCCC
Q 043177 27 PVGDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSH--SNCPICRSDAT 81 (113)
Q Consensus 27 ~~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~--~~CP~Cr~~~~ 81 (113)
....++..|+||++.|.++ ..++.|||.||..||..|+... ..||+||..+.
T Consensus 8 ~~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 8 DPIPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCCCTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred ccCCcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 3446678999999999863 4554499999999999999644 58999999863
No 34
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.40 E-value=3.3e-13 Score=75.60 Aligned_cols=52 Identities=23% Similarity=0.519 Sum_probs=40.7
Q ss_pred ccccccccc-ccccCCee-eecCCCCCcchHHHHHHHHhc-CCCCCCCCCCCCCCC
Q 043177 32 DGICAVCLS-EFEEGEEL-RTLPECLHSYHAPCIDMWLYS-HSNCPICRSDATPSP 84 (113)
Q Consensus 32 ~~~C~IC~~-~~~~~~~~-~~l~~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~~~~~~ 84 (113)
+..|+||++ .+..+... ..++ |||.||..|+..|+.. ...||+||..+....
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 57 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRKSN 57 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred CCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCcccccc
Confidence 557999999 77765433 3455 9999999999999754 467999999886543
No 35
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.40 E-value=1.8e-13 Score=82.70 Aligned_cols=48 Identities=27% Similarity=0.647 Sum_probs=41.3
Q ss_pred ccccccccccccccCCeeeec-CCCCCcchHHHHHHHHhcCCCCCCCCCCCCC
Q 043177 31 EDGICAVCLSEFEEGEELRTL-PECLHSYHAPCIDMWLYSHSNCPICRSDATP 82 (113)
Q Consensus 31 ~~~~C~IC~~~~~~~~~~~~l-~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 82 (113)
++..|+||++.|.+ ...+ + |||.||..|+..|+..+..||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~---p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNI---AMIIPQ-CSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSS---EEECTT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCC---cCEECC-CCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 45689999999986 3444 6 99999999999999988899999998864
No 36
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.40 E-value=2.4e-13 Score=83.38 Aligned_cols=50 Identities=30% Similarity=0.715 Sum_probs=42.6
Q ss_pred CccccccccccccccCCeeeec-CCCCCcchHHHHHHHHhcCCCCCCCCCCCCCC
Q 043177 30 DEDGICAVCLSEFEEGEELRTL-PECLHSYHAPCIDMWLYSHSNCPICRSDATPS 83 (113)
Q Consensus 30 ~~~~~C~IC~~~~~~~~~~~~l-~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 83 (113)
.++..|+||++.|.+ ...+ + |||.||..||..|+.....||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 13 NPHLMCVLCGGYFID---ATTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGGTBCTTTSSBCSS---EEEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CCcCCCccCChHHhC---cCEeCC-CCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 456789999999976 3444 6 999999999999999889999999988653
No 37
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.38 E-value=3.8e-13 Score=84.33 Aligned_cols=49 Identities=27% Similarity=0.493 Sum_probs=41.3
Q ss_pred CccccccccccccccCCeeeecCCCCCcchHHHHHHHHhcCC-CCCCCCCCCCC
Q 043177 30 DEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHS-NCPICRSDATP 82 (113)
Q Consensus 30 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~-~CP~Cr~~~~~ 82 (113)
.++..|+||++.|.. ...++ |||.||..||..|+.... .||+||..+..
T Consensus 50 ~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELVFR---PITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHHcC---cEEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 446789999999986 45667 999999999999997544 89999998865
No 38
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.38 E-value=8.6e-13 Score=76.75 Aligned_cols=56 Identities=18% Similarity=0.409 Sum_probs=42.5
Q ss_pred CCccccccccccccccCC-eeeecCCCCCcchHHHHHHHHh-cCCCCCCCCCCCCCCCC
Q 043177 29 GDEDGICAVCLSEFEEGE-ELRTLPECLHSYHAPCIDMWLY-SHSNCPICRSDATPSPQ 85 (113)
Q Consensus 29 ~~~~~~C~IC~~~~~~~~-~~~~l~~C~H~fh~~Ci~~wl~-~~~~CP~Cr~~~~~~~~ 85 (113)
.+++..|+||++.+...+ .+..++ |||.||..|+..++. ....||+||..+.....
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred cccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 456778999999886432 222244 999999999999874 45679999999876554
No 39
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=4.7e-13 Score=73.08 Aligned_cols=44 Identities=30% Similarity=0.776 Sum_probs=36.0
Q ss_pred CCccccccccccccccCCeeeecCCCCCcchHHHHHHHH---hcCCCCCCC
Q 043177 29 GDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWL---YSHSNCPIC 76 (113)
Q Consensus 29 ~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl---~~~~~CP~C 76 (113)
..++..|+||++.+.++ ..++ |||.||..||..|+ .....||+|
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEP---VIIE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSSC---CCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCcc---EeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34567899999999874 4566 99999999999995 356679998
No 40
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=2.4e-12 Score=74.07 Aligned_cols=52 Identities=27% Similarity=0.586 Sum_probs=41.3
Q ss_pred CccccccccccccccCCeeeecCCCCCcchHHHHHHHHhcC--CCCCCCCCCCCCCC
Q 043177 30 DEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSH--SNCPICRSDATPSP 84 (113)
Q Consensus 30 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~--~~CP~Cr~~~~~~~ 84 (113)
+....|+||++.+..+. ... .|+|.||..||.+|++.+ .+||+||..+....
T Consensus 13 ~~i~~C~IC~~~i~~g~--~C~-~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~ 66 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQ--SCE-TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 66 (74)
T ss_dssp SSSCBCSSSCCBCSSSE--ECS-SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCC
T ss_pred CCCCcCcchhhHcccCC--ccC-CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCC
Confidence 44568999999997643 222 499999999999999877 78999998876443
No 41
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.34 E-value=7.9e-13 Score=81.21 Aligned_cols=52 Identities=25% Similarity=0.531 Sum_probs=41.8
Q ss_pred ccccccccccccccCCeeeecCCCCCcchHHHHHHHHhcCC---CCCCCCCCCCCCCCC
Q 043177 31 EDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHS---NCPICRSDATPSPQI 86 (113)
Q Consensus 31 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~---~CP~Cr~~~~~~~~~ 86 (113)
+...|+||++.+..+ ..++ |||.||..|+..|+.... .||+||..+......
T Consensus 20 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~ 74 (112)
T 1jm7_A 20 KILECPICLELIKEP---VSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQ 74 (112)
T ss_dssp HHTSCSSSCCCCSSC---CBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCB
T ss_pred CCCCCcccChhhcCe---EECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcC
Confidence 355799999999763 4466 999999999999997654 799999988765443
No 42
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.32 E-value=1.4e-12 Score=81.16 Aligned_cols=51 Identities=22% Similarity=0.438 Sum_probs=42.8
Q ss_pred CCCccccccccccccccCCeeeecCCCCCcchHHHHHHHHhcCC-CCCCCCCCCCC
Q 043177 28 VGDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHS-NCPICRSDATP 82 (113)
Q Consensus 28 ~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~-~CP~Cr~~~~~ 82 (113)
...++..|+||++.+.. .+.++ |||.||..||..|+.... .||+||..+..
T Consensus 14 ~~~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 14 PLESKYECPICLMALRE---AVQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp CCCGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCcCChhhcC---eEECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 45667899999999986 35566 999999999999997655 89999998865
No 43
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.31 E-value=1.4e-12 Score=79.24 Aligned_cols=51 Identities=16% Similarity=0.059 Sum_probs=44.6
Q ss_pred CCccccccccccccccCCeeeecCCCCCcchHHHHHHHHhcCCCCCCCCCCCCCC
Q 043177 29 GDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHSNCPICRSDATPS 83 (113)
Q Consensus 29 ~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 83 (113)
..+...|+||++.|.+ ++.++ |||.|++.||..|+....+||+|+.++...
T Consensus 26 ~p~~~~CpI~~~~m~d---PV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 76 (100)
T 2kre_A 26 APDEFRDPLMDTLMTD---PVRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTES 76 (100)
T ss_dssp CSTTTBCTTTCSBCSS---EEEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCTT
T ss_pred CcHhhCCcCccCcccC---CeECC-CCCEEchHHHHHHHHcCCCCCCCCCCCChh
Confidence 4567899999999998 56777 999999999999998888999999988653
No 44
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.31 E-value=2.2e-12 Score=76.11 Aligned_cols=50 Identities=14% Similarity=0.031 Sum_probs=43.9
Q ss_pred CCccccccccccccccCCeeeecCCCCCcchHHHHHHHHhcCCCCCCCCCCCCC
Q 043177 29 GDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHSNCPICRSDATP 82 (113)
Q Consensus 29 ~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 82 (113)
..++..|+||++.|.+ .+.++ |||.|++.||..|+....+||+|+..+..
T Consensus 11 ~p~~~~CpI~~~~m~d---PV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTD---PVRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp CCTTTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CchheECcccCchhcC---CeECC-CCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 3567899999999988 56777 99999999999999988899999988754
No 45
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.31 E-value=1.8e-12 Score=84.00 Aligned_cols=49 Identities=22% Similarity=0.548 Sum_probs=41.5
Q ss_pred ccccccccccccccCCeeeecCCCCCcchHHHHHHHHhcCC-CCCCCCCCCCCC
Q 043177 31 EDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHS-NCPICRSDATPS 83 (113)
Q Consensus 31 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~-~CP~Cr~~~~~~ 83 (113)
++..|+||++.|.+ ...++ |||.||..||..|+.... .||+||..+...
T Consensus 77 ~~~~C~IC~~~~~~---pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQ---PVTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcC---CEEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 45689999999986 45577 999999999999997654 799999988765
No 46
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.31 E-value=1e-12 Score=86.08 Aligned_cols=50 Identities=32% Similarity=0.741 Sum_probs=40.8
Q ss_pred CccccccccccccccCCeeeecCCCCCcchHHHHHHHHhc-CCCCCCCCCCCCC
Q 043177 30 DEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYS-HSNCPICRSDATP 82 (113)
Q Consensus 30 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 82 (113)
.++..|+||++.|.++ +..++ |||.||..||..|+.. ...||+||..+..
T Consensus 52 ~~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 52 HSELMCPICLDMLKNT--MTTKE-CLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHHBCTTTSSBCSSE--EEETT-TCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCCcccChHhhCc--CEeCC-CCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 3466899999999862 33336 9999999999999986 6789999998853
No 47
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.31 E-value=6.8e-13 Score=82.24 Aligned_cols=51 Identities=25% Similarity=0.476 Sum_probs=42.4
Q ss_pred CccccccccccccccCCeeeecCCCCCcchHHHHHHHHhc-CCCCCCCCCCCCCCC
Q 043177 30 DEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYS-HSNCPICRSDATPSP 84 (113)
Q Consensus 30 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~~~~~~ 84 (113)
.++..|+||++.+.+ ...++ |||.||..||..|+.. ...||+||..+....
T Consensus 21 ~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 21 VKSISCQICEHILAD---PVETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72 (116)
T ss_dssp HHHTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred cCCCCCCCCCcHhcC---cEEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence 346789999999976 44566 9999999999999976 678999999886543
No 48
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.29 E-value=1.4e-12 Score=81.89 Aligned_cols=54 Identities=22% Similarity=0.584 Sum_probs=44.5
Q ss_pred CCccccccccccccccC----CeeeecCCCCCcchHHHHHHHHhcCCCCCCCCCCCCCC
Q 043177 29 GDEDGICAVCLSEFEEG----EELRTLPECLHSYHAPCIDMWLYSHSNCPICRSDATPS 83 (113)
Q Consensus 29 ~~~~~~C~IC~~~~~~~----~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 83 (113)
.++...|+||++.+... .....++ |||.||..|+..|+...++||+||..+...
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 45677899999998752 2335666 999999999999999999999999988654
No 49
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.29 E-value=3.8e-13 Score=83.25 Aligned_cols=50 Identities=28% Similarity=0.646 Sum_probs=41.7
Q ss_pred CCCccccccccccccccCCeeeecCCCCCcchHHHHHHHHhc-CCCCCCCCCCCC
Q 043177 28 VGDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYS-HSNCPICRSDAT 81 (113)
Q Consensus 28 ~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~~~ 81 (113)
...++..|+||++.+.. .+.++ |||.||..|+..|+.. ...||+||..+.
T Consensus 11 ~~~~~~~C~iC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 11 PSLSECQCGICMEILVE---PVTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp CCHHHHBCTTTCSBCSS---CEECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCCCCCccCCcccCc---eeEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 34567889999999986 45566 9999999999999965 567999999875
No 50
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.27 E-value=7.2e-12 Score=75.77 Aligned_cols=51 Identities=18% Similarity=0.124 Sum_probs=44.2
Q ss_pred CCccccccccccccccCCeeeecCCCC-CcchHHHHHHHHhcCCCCCCCCCCCCCC
Q 043177 29 GDEDGICAVCLSEFEEGEELRTLPECL-HSYHAPCIDMWLYSHSNCPICRSDATPS 83 (113)
Q Consensus 29 ~~~~~~C~IC~~~~~~~~~~~~l~~C~-H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 83 (113)
..++..|+||++.|.+ +++++ || |.|++.||..|+....+||+|+.++...
T Consensus 19 ~p~~~~CpI~~~~m~d---PV~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCD---PVVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTMD 70 (98)
T ss_dssp CCTTTBCTTTCSBCSS---EEECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred CcHhcCCcCccccccC---CeECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCChh
Confidence 3567899999999998 56677 99 9999999999998888999999988654
No 51
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.26 E-value=3.8e-12 Score=71.28 Aligned_cols=49 Identities=16% Similarity=0.313 Sum_probs=40.7
Q ss_pred CccccccccccccccCCeeeec--CCCCCc-chHHHHHHHHhcCCCCCCCCCCCCC
Q 043177 30 DEDGICAVCLSEFEEGEELRTL--PECLHS-YHAPCIDMWLYSHSNCPICRSDATP 82 (113)
Q Consensus 30 ~~~~~C~IC~~~~~~~~~~~~l--~~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~~~~ 82 (113)
+++..|.||++.+.+ ...+ | |||. |+..|+..|+..+..||+||..+..
T Consensus 6 ~~~~~C~IC~~~~~~---~~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 6 NAIEPCVICQGRPKN---GCIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQM 57 (64)
T ss_dssp GGGSCCTTTSSSCSC---EEEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred CCcCCCCcCCCCCCC---EEEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence 456689999998765 3444 8 9999 8999999999888899999998753
No 52
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.24 E-value=4.5e-12 Score=70.77 Aligned_cols=51 Identities=18% Similarity=0.348 Sum_probs=40.3
Q ss_pred CCccccccccccccccCCeeeecCCCCCc-chHHHHHHHHhcCCCCCCCCCCCC
Q 043177 29 GDEDGICAVCLSEFEEGEELRTLPECLHS-YHAPCIDMWLYSHSNCPICRSDAT 81 (113)
Q Consensus 29 ~~~~~~C~IC~~~~~~~~~~~~l~~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~~~ 81 (113)
.+.+..|.||++...+. .+..+| |||. |+..|+..|...+..||+||.++.
T Consensus 4 ~~~~~~C~IC~~~~~~~-~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 4 QNLLKPCSLCEKRPRDG-NIIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGGGSBCTTTSSSBSCE-EEEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CCcCCCCcccCCcCCCe-EEEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 34566899999987652 122237 9998 999999999988889999999875
No 53
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.19 E-value=1.3e-11 Score=90.51 Aligned_cols=49 Identities=22% Similarity=0.691 Sum_probs=41.9
Q ss_pred cccccccccccccCCeeeecCCCCCcchHHHHHHHHh-cCCCCCCCCCCCCCCC
Q 043177 32 DGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLY-SHSNCPICRSDATPSP 84 (113)
Q Consensus 32 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~-~~~~CP~Cr~~~~~~~ 84 (113)
...|+||++.+.+ +..++ |||.||..|+..|+. ....||+||..+....
T Consensus 332 ~~~C~ICle~~~~---pv~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 332 FQLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381 (389)
T ss_dssp SSBCTTTSSSBCC---EEEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred CCCCCccCcCCCC---eEEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence 3689999999876 56777 999999999999998 6788999999886543
No 54
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.19 E-value=4.7e-12 Score=69.02 Aligned_cols=47 Identities=30% Similarity=0.607 Sum_probs=38.4
Q ss_pred CccccccccccccccCCeeeecCCCCCcchHHHHHHHHhcCCCCCCCCCCCCCC
Q 043177 30 DEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHSNCPICRSDATPS 83 (113)
Q Consensus 30 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 83 (113)
.++..|+||++.|.+ ...++ |||.||..|+.. ....||+||..+...
T Consensus 4 ~~~~~C~IC~~~~~~---p~~l~-CgH~fC~~Ci~~---~~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEAKC---PKLLP-CLHTLCSGCLEA---SGMQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSCBC---CSCST-TSCCSBTTTCSS---SSSSCSSCCSSSSCC
T ss_pred ccCCCceEeCCccCC---eEEcC-CCCcccHHHHcc---CCCCCCcCCcEeecC
Confidence 456789999999987 45677 999999999977 356799999987543
No 55
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.19 E-value=3.9e-12 Score=81.64 Aligned_cols=51 Identities=22% Similarity=0.445 Sum_probs=42.1
Q ss_pred CCCccccccccccccccCCeeeecCCCCCcchHHHHHHHHhcCC-CCCCCCCCCCC
Q 043177 28 VGDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHS-NCPICRSDATP 82 (113)
Q Consensus 28 ~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~-~CP~Cr~~~~~ 82 (113)
..+++..|+||++.|..+ +.++ |||.||..||..|+.... .||+||.++..
T Consensus 27 ~l~~~~~C~IC~~~~~~p---v~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRP---FQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp GCCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred cCCcCcCCCCCChhhcCc---EECC-CCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 346678999999999873 4566 999999999999997655 79999997643
No 56
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.16 E-value=4.2e-12 Score=78.87 Aligned_cols=46 Identities=24% Similarity=0.518 Sum_probs=38.8
Q ss_pred ccccccccccccccCCeeeec-CCCCCcchHHHHHHHHhcCCCCCCCCCCCCC
Q 043177 31 EDGICAVCLSEFEEGEELRTL-PECLHSYHAPCIDMWLYSHSNCPICRSDATP 82 (113)
Q Consensus 31 ~~~~C~IC~~~~~~~~~~~~l-~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 82 (113)
++..|+||++.|..+ +.+ + |||.||..||..|+. ..||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~p---v~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 21 KLLRCSRCTNILREP---VCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAWI 67 (117)
T ss_dssp HTTSCSSSCSCCSSC---BCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCSC
T ss_pred hCCCCCCCChHhhCc---cEeCC-CCCHHHHHHHHHHhc--CCCcCCCCcCcc
Confidence 456899999999873 455 6 999999999999987 789999998754
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.14 E-value=1.2e-11 Score=71.03 Aligned_cols=44 Identities=25% Similarity=0.652 Sum_probs=37.5
Q ss_pred ccccccccccccccCCeeeecCCCCCc-chHHHHHHHHhcCCCCCCCCCCCCC
Q 043177 31 EDGICAVCLSEFEEGEELRTLPECLHS-YHAPCIDMWLYSHSNCPICRSDATP 82 (113)
Q Consensus 31 ~~~~C~IC~~~~~~~~~~~~l~~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~~~~ 82 (113)
++..|+||++.+.+ +..+| |||. ||..|+..| ..||+||..+..
T Consensus 23 ~~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCC---EEEET-TCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCC---EEEcC-CCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 45689999999876 56777 9999 999999988 789999998754
No 58
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.09 E-value=4.3e-11 Score=71.69 Aligned_cols=50 Identities=20% Similarity=0.373 Sum_probs=39.7
Q ss_pred CccccccccccccccCCeeeecCCCCCcchHHHHHHHHhcC------CCCCC--CCCC-CCC
Q 043177 30 DEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSH------SNCPI--CRSD-ATP 82 (113)
Q Consensus 30 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~------~~CP~--Cr~~-~~~ 82 (113)
.++..|+||++.|.+ ++.++.|||.|++.||..|+... .+||+ |+.. +..
T Consensus 5 ~~~~~CPI~~~~~~d---PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~ 63 (94)
T 2yu4_A 5 SSGFTCPITKEEMKK---PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRK 63 (94)
T ss_dssp SSCCBCTTTCSBCSS---EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCG
T ss_pred CcEeECcCcCchhcC---CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCH
Confidence 456789999999987 45553499999999999999653 47999 8866 443
No 59
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.09 E-value=7.2e-11 Score=77.51 Aligned_cols=52 Identities=21% Similarity=0.431 Sum_probs=42.7
Q ss_pred CCCccccccccccccccCCeeeecCCCCCcchHHHHHHHHhcC-CCCCCCCCCCCCC
Q 043177 28 VGDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSH-SNCPICRSDATPS 83 (113)
Q Consensus 28 ~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~-~~CP~Cr~~~~~~ 83 (113)
..+++..|+||++.|.+ ++.++ |||.||..|+..|+... ..||+||..+...
T Consensus 14 ~~~~~~~C~IC~~~~~~---pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 14 PLESKYECPICLMALRE---AVQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp CCCGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCChhhcC---cEECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 34667899999999987 34566 99999999999999654 4899999987653
No 60
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.08 E-value=7.6e-11 Score=82.16 Aligned_cols=52 Identities=17% Similarity=0.058 Sum_probs=43.1
Q ss_pred CCCccccccccccccccCCeeeecCCCCCcchHHHHHHHHhcC-CCCCCCCCCCCCC
Q 043177 28 VGDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSH-SNCPICRSDATPS 83 (113)
Q Consensus 28 ~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~-~~CP~Cr~~~~~~ 83 (113)
.......|+||++.|.+ +++++ |||+||+.||..|+... .+||+|+.++...
T Consensus 204 ~~~~~~~c~i~~~~~~d---Pv~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~ 256 (281)
T 2c2l_A 204 DIPDYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQE 256 (281)
T ss_dssp CCCSTTBCTTTCSBCSS---EEECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCGG
T ss_pred CCCcccCCcCcCCHhcC---CeECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCchh
Confidence 34567899999999988 56777 99999999999999754 4599999988543
No 61
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=2.2e-10 Score=64.75 Aligned_cols=51 Identities=27% Similarity=0.621 Sum_probs=40.5
Q ss_pred CCCCccccccccccccccCCeeeecCCCCCc-chHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 043177 27 PVGDEDGICAVCLSEFEEGEELRTLPECLHS-YHAPCIDMWLYSHSNCPICRSDATPSPQ 85 (113)
Q Consensus 27 ~~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~ 85 (113)
...+++..|.||++...+ +..+| |||. ||..|+.. ...||+||..+.....
T Consensus 10 ~~~~~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~~~~ 61 (68)
T 2ea5_A 10 PSEENSKDCVVCQNGTVN---WVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQESFA 61 (68)
T ss_dssp CSCCCSSCCSSSSSSCCC---CEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCCEEC
T ss_pred ccCCCCCCCCCcCcCCCC---EEEEC-CCChhhhHHHHhc----CCCCCCCCcchhceEE
Confidence 334557789999998765 67788 9999 99999973 4789999998876433
No 62
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=99.00 E-value=9.2e-11 Score=84.56 Aligned_cols=55 Identities=24% Similarity=0.691 Sum_probs=40.9
Q ss_pred CCCccccccccccccccCCee----eecCCCCCcchHHHHHHHHhcC-----------CCCCCCCCCCCC
Q 043177 28 VGDEDGICAVCLSEFEEGEEL----RTLPECLHSYHAPCIDMWLYSH-----------SNCPICRSDATP 82 (113)
Q Consensus 28 ~~~~~~~C~IC~~~~~~~~~~----~~l~~C~H~fh~~Ci~~wl~~~-----------~~CP~Cr~~~~~ 82 (113)
..++...|+||++.+.++..+ ...+.|+|.||..|+..|+.+. +.||.||.++..
T Consensus 304 ~ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 304 EDNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CCCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 345677899999998873322 1223599999999999999642 469999997753
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=1.6e-10 Score=66.40 Aligned_cols=45 Identities=24% Similarity=0.643 Sum_probs=36.6
Q ss_pred ccccccccccccccCCeeeecCCCCCc-chHHHHHHHHhcCCCCCCCCCCCCCC
Q 043177 31 EDGICAVCLSEFEEGEELRTLPECLHS-YHAPCIDMWLYSHSNCPICRSDATPS 83 (113)
Q Consensus 31 ~~~~C~IC~~~~~~~~~~~~l~~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 83 (113)
++..|+||++.+.+ +..+| |||. ||..|+.. ...||+||..+...
T Consensus 24 ~~~~C~IC~~~~~~---~~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 24 EEKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEA----VDKCPMCYTVITFK 69 (75)
T ss_dssp HHHSCSSSCSSCCC---BCCSS-SCCCCBCHHHHHH----CSBCTTTCCBCCCC
T ss_pred CCCCCCcCCCCCCC---EEEec-CCCHHHHHHHhhC----CCCCccCCceecCc
Confidence 35579999999876 55677 9999 99999964 47899999988654
No 64
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.98 E-value=4.3e-10 Score=74.65 Aligned_cols=52 Identities=17% Similarity=0.057 Sum_probs=43.1
Q ss_pred CCCccccccccccccccCCeeeecCCCCCcchHHHHHHHHhcC-CCCCCCCCCCCCC
Q 043177 28 VGDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSH-SNCPICRSDATPS 83 (113)
Q Consensus 28 ~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~-~~CP~Cr~~~~~~ 83 (113)
...+...|+||++.|.+ ++.++ |||.|++.||..|+... .+||+|+.++...
T Consensus 102 ~ip~~f~CPI~~elm~D---PV~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~ 154 (179)
T 2f42_A 102 EIPDYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQD 154 (179)
T ss_dssp CCCGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCcHhhcccCccccCCC---CeECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence 34678899999999997 56677 99999999999999764 4699999887543
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.94 E-value=5.3e-10 Score=66.75 Aligned_cols=48 Identities=19% Similarity=0.522 Sum_probs=38.0
Q ss_pred ccccccccccccccCCeeeecCCCCCcchHHHHHHHHhc--------CCCCCC--CCCC
Q 043177 31 EDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYS--------HSNCPI--CRSD 79 (113)
Q Consensus 31 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~--------~~~CP~--Cr~~ 79 (113)
+...|+||++.+..+..+...+ |||.||..|+..++.. ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 4568999999998765555456 9999999999999842 125999 9887
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.93 E-value=1.7e-10 Score=67.07 Aligned_cols=47 Identities=30% Similarity=0.629 Sum_probs=38.3
Q ss_pred ccccccccccccccCCeeeecCCCCCc-chHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 043177 31 EDGICAVCLSEFEEGEELRTLPECLHS-YHAPCIDMWLYSHSNCPICRSDATPSPQ 85 (113)
Q Consensus 31 ~~~~C~IC~~~~~~~~~~~~l~~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~ 85 (113)
++..|+||++.+.+ +..+| |||. ||..|+..| ..||+||..+.....
T Consensus 17 ~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~~~~ 64 (79)
T 2yho_A 17 EAMLCMVCCEEEIN---STFCP-CGHTVCCESCAAQL----QSCPVCRSRVEHVQH 64 (79)
T ss_dssp HHTBCTTTSSSBCC---EEEET-TCBCCBCHHHHTTC----SBCTTTCCBCCEEEE
T ss_pred CCCEeEEeCcccCc---EEEEC-CCCHHHHHHHHHhc----CcCCCCCchhhCeEE
Confidence 35579999998776 66788 9999 999999876 389999999876543
No 67
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.89 E-value=1.9e-09 Score=59.43 Aligned_cols=49 Identities=27% Similarity=0.655 Sum_probs=36.7
Q ss_pred CCccccccccccccccCCeeeecCCCC--C---cchHHHHHHHHhc--CCCCCCCCCCCC
Q 043177 29 GDEDGICAVCLSEFEEGEELRTLPECL--H---SYHAPCIDMWLYS--HSNCPICRSDAT 81 (113)
Q Consensus 29 ~~~~~~C~IC~~~~~~~~~~~~l~~C~--H---~fh~~Ci~~wl~~--~~~CP~Cr~~~~ 81 (113)
+++...|.||++.... . ..+| |. + .||..|+.+|+.. +.+||+|+..+.
T Consensus 3 ~~~~~~CrIC~~~~~~--~-l~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 3 DEDVPVCWICNEELGN--E-RFRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp TCSCCEETTTTEECSC--C-CCCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCEeEEeecCCCC--c-eecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 3456689999997432 2 3466 54 4 8999999999953 567999998774
No 68
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.75 E-value=7.4e-09 Score=72.21 Aligned_cols=53 Identities=21% Similarity=0.448 Sum_probs=41.3
Q ss_pred CCccccccccccccccCCeeeecCCCCCcchHHHHHHHHhcC--CCCCC--CCCCCCCCC
Q 043177 29 GDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSH--SNCPI--CRSDATPSP 84 (113)
Q Consensus 29 ~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~--~~CP~--Cr~~~~~~~ 84 (113)
...+..|+||++.|.++ +.... |||.|++.||..|+..+ ..||+ |+..+....
T Consensus 178 ~~~el~CPIcl~~f~DP--Vts~~-CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~d 234 (267)
T 3htk_C 178 GKIELTCPITCKPYEAP--LISRK-CNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRD 234 (267)
T ss_dssp SBCCSBCTTTSSBCSSE--EEESS-SCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGG
T ss_pred CceeeECcCccCcccCC--eeeCC-CCCcccHHHHHHHHHhCCCCCCCcccccCcCchhh
Confidence 35577899999999873 32334 99999999999999754 36999 999775443
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.72 E-value=1.9e-09 Score=78.10 Aligned_cols=44 Identities=30% Similarity=0.664 Sum_probs=37.6
Q ss_pred ccccccccccccccCCeeeecCCCCCc-chHHHHHHHHhcCCCCCCCCCCCCC
Q 043177 31 EDGICAVCLSEFEEGEELRTLPECLHS-YHAPCIDMWLYSHSNCPICRSDATP 82 (113)
Q Consensus 31 ~~~~C~IC~~~~~~~~~~~~l~~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~~~~ 82 (113)
++..|+||++.+.+ +..+| |||. ||..|+..| ..||+||..+..
T Consensus 294 ~~~~C~IC~~~~~~---~v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVS---VVFIP-CGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCC---EEEET-TCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCCc---eEEcC-CCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 45789999999876 56778 9999 999999887 679999998854
No 70
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.69 E-value=8.2e-09 Score=57.06 Aligned_cols=51 Identities=12% Similarity=0.179 Sum_probs=42.1
Q ss_pred ccccccccccccCCeeeecCCCCCcchHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 043177 33 GICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHSNCPICRSDATPSPQI 86 (113)
Q Consensus 33 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~~ 86 (113)
..|+|+++.|.+ .+..+.+||+|.+.||.+|+..+++||+.+.++......
T Consensus 4 ~~CpIs~~~m~d---PV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Li 54 (61)
T 2bay_A 4 MLCAISGKVPRR---PVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIV 54 (61)
T ss_dssp CCCTTTCSCCSS---EEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCE
T ss_pred EEecCCCCCCCC---CEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcE
Confidence 579999999987 455523999999999999998888899999988655443
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.41 E-value=2.8e-07 Score=55.24 Aligned_cols=47 Identities=21% Similarity=0.453 Sum_probs=37.1
Q ss_pred cccccccccccCCeeeecCCCCCcchHHHHHHHH-hcCCCCCCCCCCCCCC
Q 043177 34 ICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWL-YSHSNCPICRSDATPS 83 (113)
Q Consensus 34 ~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl-~~~~~CP~Cr~~~~~~ 83 (113)
.|.+|--++.. ..+.+| |+|+||.+|+..|. +..++||.|+.++...
T Consensus 3 fC~~C~~Pi~i--ygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 3 FCDKCGLPIKV--YGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQRI 50 (101)
T ss_dssp BCTTTCSBCSE--EEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCSEE
T ss_pred ecCccCCCeEE--Eeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeeeee
Confidence 47777776653 456677 99999999999998 4567899999988643
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.21 E-value=2.3e-06 Score=59.09 Aligned_cols=50 Identities=26% Similarity=0.587 Sum_probs=39.3
Q ss_pred ccccccccccccccCCeeeecCCCCCcchHHHHHHHHhcCC--CCCCCCCCCCCC
Q 043177 31 EDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHS--NCPICRSDATPS 83 (113)
Q Consensus 31 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~--~CP~Cr~~~~~~ 83 (113)
.-..|.||.+....+ .. .+.|+|.||..|+..|++... .||.|+..+...
T Consensus 179 ~i~~C~iC~~iv~~g--~~-C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 179 AVKICNICHSLLIQG--QS-CETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp TCCBCTTTCSBCSSC--EE-CSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCCcCcchhhHHhCC--cc-cCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 356899999988764 32 334999999999999997654 799999987544
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.67 E-value=0.0013 Score=38.98 Aligned_cols=35 Identities=20% Similarity=0.437 Sum_probs=25.3
Q ss_pred ccccccccccccccCCeeeecCCCCCcchHHHHHHH
Q 043177 31 EDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMW 66 (113)
Q Consensus 31 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w 66 (113)
++..|.||.+.+.......-+. |+|.||..|+..+
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHH
Confidence 4568999998643322233366 9999999999983
No 74
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=96.59 E-value=0.0021 Score=37.94 Aligned_cols=51 Identities=24% Similarity=0.494 Sum_probs=39.7
Q ss_pred ccccccccccccccCCeeeecCCC-CCcchHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q 043177 31 EDGICAVCLSEFEEGEELRTLPEC-LHSYHAPCIDMWLYSHSNCPICRSDATPSPQIL 87 (113)
Q Consensus 31 ~~~~C~IC~~~~~~~~~~~~l~~C-~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~~~ 87 (113)
+-..|-.|+-..+. .+ . | .|.+|..|+...+.....||+|+.+++..-.+.
T Consensus 27 G~~nCKsCWf~~k~---LV--~-C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~~ 78 (99)
T 2ko5_A 27 GPQFCKSCWFENKG---LV--E-CNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRPS 78 (99)
T ss_dssp CCCCCCSSCSCCSS---EE--E-CSSCEEEHHHHHHTCSSSSEETTTTEECCCCSCTT
T ss_pred CcccChhhccccCC---ee--e-ecchhhHHHHHHHHHhhccCCcccCCcCCcceecC
Confidence 45579999987653 22 2 5 599999999999999999999999987665443
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=95.98 E-value=0.0092 Score=32.96 Aligned_cols=47 Identities=21% Similarity=0.413 Sum_probs=32.3
Q ss_pred CccccccccccccccCCeeeecCCCCCcchHHHHHHHHhcCC----CCCCCCCCC
Q 043177 30 DEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHS----NCPICRSDA 80 (113)
Q Consensus 30 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~----~CP~Cr~~~ 80 (113)
..+..|.||.+. +. +..-..|...||..|+...+.... .||.|....
T Consensus 10 ~~~~~C~vC~~~---~~-ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 10 APGARCGVCGDG---TD-VLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CTTCCCTTTSCC---TT-CEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCCcCCCCCC---Ce-EEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 345679999853 22 333345889999999987764433 599997654
No 76
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=95.06 E-value=0.078 Score=30.00 Aligned_cols=53 Identities=15% Similarity=0.345 Sum_probs=33.8
Q ss_pred CCCCccccccccccccccCCeeeecCCCCCcchHHHHHHHHh-----cCCCCCCCCCCC
Q 043177 27 PVGDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLY-----SHSNCPICRSDA 80 (113)
Q Consensus 27 ~~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~-----~~~~CP~Cr~~~ 80 (113)
..+.+...| ||..........+.-..|...||..|+.--.. ....||.|+...
T Consensus 7 ~~~~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 7 GMALVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CccCCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 334555567 99987753333334445899999999852211 344699997754
No 77
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=94.53 E-value=0.016 Score=31.51 Aligned_cols=51 Identities=20% Similarity=0.502 Sum_probs=34.2
Q ss_pred CCccccccccccccccCCeeeecCCCCCcchHHHHHHHHh-----cCCCCCCCCCC
Q 043177 29 GDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLY-----SHSNCPICRSD 79 (113)
Q Consensus 29 ~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~-----~~~~CP~Cr~~ 79 (113)
.+++..|+||...+.++...+.-..|...||..|+.--.. ....||.|+..
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 4567789999998764443444445889999999853221 23458888653
No 78
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=94.11 E-value=0.048 Score=29.91 Aligned_cols=36 Identities=19% Similarity=0.487 Sum_probs=25.0
Q ss_pred CCccccccccccccccCCeeeecC-CCCCcchHHHHH
Q 043177 29 GDEDGICAVCLSEFEEGEELRTLP-ECLHSYHAPCID 64 (113)
Q Consensus 29 ~~~~~~C~IC~~~~~~~~~~~~l~-~C~H~fh~~Ci~ 64 (113)
.+....|.+|...+.+....+.-. .|.-.||..|+.
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 345568999999987665555544 588999999984
No 79
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=93.93 E-value=0.084 Score=30.48 Aligned_cols=35 Identities=23% Similarity=0.444 Sum_probs=22.9
Q ss_pred CccccccccccccccCCeeeecCCCCCcchHHHHHHH
Q 043177 30 DEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMW 66 (113)
Q Consensus 30 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w 66 (113)
..|..|.||-.-- ..+ ......|+.+||..|+.+.
T Consensus 13 ~~D~~C~VC~~~t-~~~-l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCEVWT-AES-LFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTCCCC-SSC-CSSCSSSSSCCCHHHHHHH
T ss_pred CCCcccCcccccc-ccc-eeccccccccccHhhcccc
Confidence 4567899997432 211 1111148999999999986
No 80
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=93.82 E-value=0.041 Score=29.67 Aligned_cols=46 Identities=30% Similarity=0.689 Sum_probs=30.4
Q ss_pred CCccccccccccccccCCeeeecCCCCCcchHHHHHHHHhcC----CCCCCCCC
Q 043177 29 GDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSH----SNCPICRS 78 (113)
Q Consensus 29 ~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~----~~CP~Cr~ 78 (113)
...+..|.+|... +. +..-..|...||..|+..-+... -.||.|..
T Consensus 8 ~~~~~~C~vC~~~---g~-ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 8 TDHQDYCEVCQQG---GE-IILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SCCCSSCTTTSCC---SS-EEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCCccCCCC---Cc-EEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 4556789999873 22 33434588899999997643222 24888854
No 81
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=92.83 E-value=0.034 Score=36.69 Aligned_cols=48 Identities=17% Similarity=0.472 Sum_probs=33.7
Q ss_pred ccccccccccccCCe---eeecCCCCCcchHHHHHH------HHh-----cCCCCCCCCCCC
Q 043177 33 GICAVCLSEFEEGEE---LRTLPECLHSYHAPCIDM------WLY-----SHSNCPICRSDA 80 (113)
Q Consensus 33 ~~C~IC~~~~~~~~~---~~~l~~C~H~fh~~Ci~~------wl~-----~~~~CP~Cr~~~ 80 (113)
..|+||...+.+++. .+....|...||..|+.- -+. ..-.||.|+..-
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 469999998887652 444445999999999742 111 256899998754
No 82
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=92.36 E-value=0.025 Score=30.59 Aligned_cols=48 Identities=33% Similarity=0.593 Sum_probs=30.4
Q ss_pred CCccccccccccccccCCeeeecCCCCCcchHHHHHHHHhcC----CCCCCCCCCC
Q 043177 29 GDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSH----SNCPICRSDA 80 (113)
Q Consensus 29 ~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~----~~CP~Cr~~~ 80 (113)
+..+..|.||.+. +. +..-..|...||..|+..-+... -.||.|....
T Consensus 6 d~~~~~C~vC~~~---g~-ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 6 DHHMEFCRVCKDG---GE-LLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp CSSCSSCTTTCCC---SS-CBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred cCCCCcCCCCCCC---CC-EEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 4556789999863 22 33333478889999987533222 2499996643
No 83
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=92.28 E-value=0.063 Score=29.98 Aligned_cols=51 Identities=25% Similarity=0.554 Sum_probs=33.0
Q ss_pred CCccccccccccccccCCeeeecCCCCCcchHHHHHHHHh----cCCCCCCCCCCC
Q 043177 29 GDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLY----SHSNCPICRSDA 80 (113)
Q Consensus 29 ~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~----~~~~CP~Cr~~~ 80 (113)
..+...|.||..... +...+.-..|...||..|+..-.. ..-.||.|+..+
T Consensus 15 ~~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 15 GNQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp SCEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred CCCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCch
Confidence 455667999988653 333334445888999999965432 223599996544
No 84
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=91.93 E-value=0.088 Score=27.10 Aligned_cols=44 Identities=32% Similarity=0.683 Sum_probs=27.0
Q ss_pred cccccccccccCCeeeecCCCCCcchHHHHHHHHhcC----CCCCCCCC
Q 043177 34 ICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSH----SNCPICRS 78 (113)
Q Consensus 34 ~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~----~~CP~Cr~ 78 (113)
.|.||...-..+ .+..-..|...||..|+..=+... -.||.|+.
T Consensus 2 ~C~vC~~~~~~~-~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDD-KLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCS-CCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCC-CEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 488888653322 233334588899999996433222 24888864
No 85
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=91.56 E-value=0.15 Score=26.39 Aligned_cols=44 Identities=14% Similarity=0.297 Sum_probs=28.3
Q ss_pred cccccccccccCCeeeecC-CCCCcchHHHHHHH----HhcCCCCCCCC
Q 043177 34 ICAVCLSEFEEGEELRTLP-ECLHSYHAPCIDMW----LYSHSNCPICR 77 (113)
Q Consensus 34 ~C~IC~~~~~~~~~~~~l~-~C~H~fh~~Ci~~w----l~~~~~CP~Cr 77 (113)
.|.+|...+.++...+.-. .|...||..|+.-- ......||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 3678888876554444444 48889999997421 13455688884
No 86
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=90.93 E-value=0.21 Score=28.99 Aligned_cols=49 Identities=27% Similarity=0.575 Sum_probs=32.5
Q ss_pred CCCCccccccccccccccCCeeeecCCCCCcchHHHHHHHHhcCC----CCCCCCCC
Q 043177 27 PVGDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHS----NCPICRSD 79 (113)
Q Consensus 27 ~~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~----~CP~Cr~~ 79 (113)
...+++..|.+|... +. +..-..|.-.||..|+..=+...+ .||.|...
T Consensus 20 ~~d~n~~~C~vC~~~---g~-LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 20 TLDDSATICRVCQKP---GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSSSCCSSSCSS---SC-CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred ccCCCCCcCcCcCCC---CC-EEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 345667789999975 22 333345778899999966443322 49999764
No 87
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=90.85 E-value=0.045 Score=36.53 Aligned_cols=48 Identities=27% Similarity=0.531 Sum_probs=32.5
Q ss_pred CCccccccccccccccCCeeeecCCCCCcchHHHHHHHHhcC----CCCCCCCCCC
Q 043177 29 GDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSH----SNCPICRSDA 80 (113)
Q Consensus 29 ~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~----~~CP~Cr~~~ 80 (113)
+..+..|.+|... ..+.....|...||..|+..-+... -.||.|+..-
T Consensus 4 d~~~~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 4 DPNEDWCAVCQNG----GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp CSSCSSBTTTCCC----EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCC----CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 4556789999854 2244444588899999987654322 2599998754
No 88
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=89.91 E-value=0.053 Score=35.50 Aligned_cols=47 Identities=30% Similarity=0.588 Sum_probs=31.4
Q ss_pred ccccccccccccccCCeeeecCCCCCcchHHHHHHHHhcC----CCCCCCCCCCC
Q 043177 31 EDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSH----SNCPICRSDAT 81 (113)
Q Consensus 31 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~----~~CP~Cr~~~~ 81 (113)
++..|.+|... +. +.....|...||..|+..-+... -.||.|+....
T Consensus 3 ~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 3 NEDWCAVCQNG---GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp SCSSCTTTCCC---SS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCccccCCCC---Ce-eeecCCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 45679999854 33 33334588899999986654322 25999987543
No 89
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=89.88 E-value=0.33 Score=39.53 Aligned_cols=52 Identities=15% Similarity=0.128 Sum_probs=43.3
Q ss_pred CCccccccccccccccCCeeeecCCCC-CcchHHHHHHHHhcCCCCCCCCCCCCCCC
Q 043177 29 GDEDGICAVCLSEFEEGEELRTLPECL-HSYHAPCIDMWLYSHSNCPICRSDATPSP 84 (113)
Q Consensus 29 ~~~~~~C~IC~~~~~~~~~~~~l~~C~-H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 84 (113)
..+...|+|=++.|.+ ++.++ -| +.|-+..|.+|+....+||+=|.++....
T Consensus 888 iP~~F~cPIs~~lM~D---PVilp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~ 940 (968)
T 3m62_A 888 VPDEFLDPLMYTIMKD---PVILP-ASKMNIDRSTIKAHLLSDSTDPFNRMPLKLED 940 (968)
T ss_dssp SCGGGBCTTTCSBCSS---EEECT-TTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGG
T ss_pred CcHHhCCcchhhHHhC---CeEcC-CCCEEECHHHHHHHHhcCCCCCCCCCCCCccc
Confidence 4567789999999988 56777 66 68999999999988889999988876443
No 90
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=89.60 E-value=0.51 Score=26.27 Aligned_cols=49 Identities=16% Similarity=0.366 Sum_probs=31.0
Q ss_pred CCccccccccccccccCCeeeecCCCCCcchHHHHHHHH---------hcCCCCCCCCCC
Q 043177 29 GDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWL---------YSHSNCPICRSD 79 (113)
Q Consensus 29 ~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl---------~~~~~CP~Cr~~ 79 (113)
+.+...| ||......+..+. -..|...||..|+.--. .....||.|+..
T Consensus 13 d~~~~~C-~C~~~~~~~~MI~-Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 13 DPNALYC-ICRQPHNNRFMIC-CDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CTTCCCS-TTCCCCCSSCEEE-CSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCCCCEE-ECCCccCCCCEEE-eCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 3445567 8988765433343 33488999999984211 245679999653
No 91
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=89.54 E-value=0.47 Score=27.14 Aligned_cols=40 Identities=18% Similarity=0.382 Sum_probs=28.1
Q ss_pred CccccccccccccccCCeeeecC-CCCCcchHHHHHHHHhcC
Q 043177 30 DEDGICAVCLSEFEEGEELRTLP-ECLHSYHAPCIDMWLYSH 70 (113)
Q Consensus 30 ~~~~~C~IC~~~~~~~~~~~~l~-~C~H~fh~~Ci~~wl~~~ 70 (113)
.....|.+|.+.+.+.--+ ..| .=.|.||..|-...++++
T Consensus 13 ~a~l~CtlC~erLEdtHFV-QCPsv~~HkFCFpCsr~sIk~q 53 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFV-QCPSVPSHKFCFPCSRESIKAQ 53 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSE-ECSSCSSCEECHHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCcee-eCCCccCCeeeccccHHHHHhc
Confidence 4456799999999874322 222 236999999998888543
No 92
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.78 E-value=0.024 Score=30.02 Aligned_cols=34 Identities=29% Similarity=0.726 Sum_probs=23.2
Q ss_pred CCCccccccccccccccCCeeeecCCCCCcchHHHHHH
Q 043177 28 VGDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDM 65 (113)
Q Consensus 28 ~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~ 65 (113)
...++..|.+|... +. +..-..|...||..|+..
T Consensus 5 ~~~~~~~C~vC~~~---g~-ll~Cd~C~~~~H~~Cl~p 38 (56)
T 2yql_A 5 SSGHEDFCSVCRKS---GQ-LLMCDTCSRVYHLDCLDP 38 (56)
T ss_dssp CCSSCCSCSSSCCS---SC-CEECSSSSCEECSSSSSS
T ss_pred cCCCCCCCccCCCC---Ce-EEEcCCCCcceECccCCC
Confidence 34567789999874 22 333335888999998864
No 93
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=88.11 E-value=0.43 Score=26.46 Aligned_cols=47 Identities=26% Similarity=0.608 Sum_probs=28.3
Q ss_pred CCccccccccccccccCCeeeecCC--CC-CcchHHHHHHHHhc----CCCCCCCCCCC
Q 043177 29 GDEDGICAVCLSEFEEGEELRTLPE--CL-HSYHAPCIDMWLYS----HSNCPICRSDA 80 (113)
Q Consensus 29 ~~~~~~C~IC~~~~~~~~~~~~l~~--C~-H~fh~~Ci~~wl~~----~~~CP~Cr~~~ 80 (113)
..+...| ||..... +. .+.-.. |. ..||..|+. +.. .-.||.|+...
T Consensus 13 ~~~~~~C-~C~~~~~-g~-MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 13 PNEPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp TTSCCCS-TTCCCSC-SS-EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCCCEE-ECCCCCC-CC-EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 3455667 8988542 33 333233 55 589999996 322 22599997643
No 94
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=87.85 E-value=0.12 Score=31.00 Aligned_cols=38 Identities=29% Similarity=0.565 Sum_probs=25.4
Q ss_pred CCccccccccccccccCCeeeecCCCCCcchHHHHHHHH
Q 043177 29 GDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWL 67 (113)
Q Consensus 29 ~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl 67 (113)
..++..|.||.+.-.....+.- ..|+..||..|+...+
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll~C-~~C~~~~H~~Cl~~~~ 41 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQFFC-TTCGQHYHGMCLDIAV 41 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSEEC-SSSCCEECTTTTTCCC
T ss_pred CCCCCCCcCCCCCCCCcCCeEC-CCCCCCcChHHhCCcc
Confidence 4567789999886322122332 3589999999997654
No 95
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=87.30 E-value=0.23 Score=29.71 Aligned_cols=48 Identities=21% Similarity=0.449 Sum_probs=32.1
Q ss_pred ccccccccccccCCeeeecC-CCCCcchHHHHHHHH----------hcCCCCCCCCCCC
Q 043177 33 GICAVCLSEFEEGEELRTLP-ECLHSYHAPCIDMWL----------YSHSNCPICRSDA 80 (113)
Q Consensus 33 ~~C~IC~~~~~~~~~~~~l~-~C~H~fh~~Ci~~wl----------~~~~~CP~Cr~~~ 80 (113)
..|.||...+.+......-. .|...||..|+.--. .....||.|+...
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 46999999876544444442 588899999974211 1344699997654
No 96
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=86.50 E-value=1.5 Score=27.66 Aligned_cols=46 Identities=26% Similarity=0.464 Sum_probs=31.6
Q ss_pred CCccccccccccccccCCeeeecCCCCCcchHHHHHHHHh-----------cCCCCCCCCC
Q 043177 29 GDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLY-----------SHSNCPICRS 78 (113)
Q Consensus 29 ~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~-----------~~~~CP~Cr~ 78 (113)
+..+..|.+|.+. ++ +.....|...||..|+..-+. ..-.||.|+.
T Consensus 60 Dg~~d~C~vC~~G---G~-LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEG---GN-LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCCC---SS-EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCCC---Cc-EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 4557789999985 22 334445888999999996552 1225999964
No 97
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=86.42 E-value=0.3 Score=26.37 Aligned_cols=50 Identities=24% Similarity=0.579 Sum_probs=31.4
Q ss_pred CCcccccccccccccc-CCeeeecCCCCCcchHHHHHHHHh-------cCCCCCCCCC
Q 043177 29 GDEDGICAVCLSEFEE-GEELRTLPECLHSYHAPCIDMWLY-------SHSNCPICRS 78 (113)
Q Consensus 29 ~~~~~~C~IC~~~~~~-~~~~~~l~~C~H~fh~~Ci~~wl~-------~~~~CP~Cr~ 78 (113)
..++..|.||...... ...+..-..|...||..|+..-+. ..-.|+.|..
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~ 60 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVF 60 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcC
Confidence 3456789999986432 233444446888999999864321 1224777754
No 98
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=86.42 E-value=0.25 Score=29.09 Aligned_cols=46 Identities=17% Similarity=0.397 Sum_probs=29.2
Q ss_pred ccccccccccccccCCeeeecCCCCCcchHHHHHHHHhc---CCCCCCCCC
Q 043177 31 EDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYS---HSNCPICRS 78 (113)
Q Consensus 31 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~---~~~CP~Cr~ 78 (113)
+...| ||......+..+ .-..|.-.||..|+..-... .-.||.|+.
T Consensus 27 d~vrC-iC~~~~~~~~mi-~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGYMI-CCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CBCCC-TTSCCSCSSCEE-EBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCEEe-ECCCccCCCcEE-EcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 34456 898766554444 33458999999998643221 235999964
No 99
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=86.31 E-value=0.89 Score=26.19 Aligned_cols=52 Identities=19% Similarity=0.423 Sum_probs=32.0
Q ss_pred CCcccccccccccc-ccCCeeeecCCCCCcchHHHHHHHHh--cCCCCCCCCCCC
Q 043177 29 GDEDGICAVCLSEF-EEGEELRTLPECLHSYHAPCIDMWLY--SHSNCPICRSDA 80 (113)
Q Consensus 29 ~~~~~~C~IC~~~~-~~~~~~~~l~~C~H~fh~~Ci~~wl~--~~~~CP~Cr~~~ 80 (113)
.+++..|.||...- .+...+..-..|.-.||..|+..-.. ..-.||.|....
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 45677999999753 22223444445888999999864321 122488885543
No 100
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=85.95 E-value=0.15 Score=30.76 Aligned_cols=45 Identities=24% Similarity=0.537 Sum_probs=27.2
Q ss_pred cccccccccccCCeeeecCCCCCcchHHHHHHHHhcC----CCCCCCCC
Q 043177 34 ICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSH----SNCPICRS 78 (113)
Q Consensus 34 ~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~----~~CP~Cr~ 78 (113)
.|.||.+.-.+...+..-..|...||..|+..-+... =.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 5778876432323344444588999999986543222 24888864
No 101
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=84.87 E-value=1.3 Score=24.41 Aligned_cols=38 Identities=21% Similarity=0.530 Sum_probs=25.8
Q ss_pred CCCcccccccccccc-ccCCeeeecCCCCCcchHHHHHH
Q 043177 28 VGDEDGICAVCLSEF-EEGEELRTLPECLHSYHAPCIDM 65 (113)
Q Consensus 28 ~~~~~~~C~IC~~~~-~~~~~~~~l~~C~H~fh~~Ci~~ 65 (113)
...++..|.||.+.- .+...+..-..|.-.||..|+..
T Consensus 12 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~ 50 (71)
T 2ku3_A 12 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGV 50 (71)
T ss_dssp CCCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTC
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCC
Confidence 345677899998753 22334444446888999999864
No 102
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=84.36 E-value=0.67 Score=27.01 Aligned_cols=48 Identities=23% Similarity=0.558 Sum_probs=27.5
Q ss_pred CccccccccccccccCCeeeecCC--CC-CcchHHHHHHHH--hcCCCCCCCCCCC
Q 043177 30 DEDGICAVCLSEFEEGEELRTLPE--CL-HSYHAPCIDMWL--YSHSNCPICRSDA 80 (113)
Q Consensus 30 ~~~~~C~IC~~~~~~~~~~~~l~~--C~-H~fh~~Ci~~wl--~~~~~CP~Cr~~~ 80 (113)
.+...| ||..... +. .+.-.. |. ..||..|+.--. ...-.||.|+...
T Consensus 34 ~e~~yC-iC~~~~~-g~-MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 34 NEPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCCBCS-TTCCBCC-SC-CCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCCC
T ss_pred CCCcEE-ECCCCCC-CC-EeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCcC
Confidence 345567 9988643 32 222223 44 589999986211 1223599997643
No 103
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=84.31 E-value=0.78 Score=27.53 Aligned_cols=50 Identities=28% Similarity=0.615 Sum_probs=30.2
Q ss_pred CCCCCccccccccccccccCCeeeecC--CCCCcchHHHHHHHHhcCC----CCCCCCCCCC
Q 043177 26 GPVGDEDGICAVCLSEFEEGEELRTLP--ECLHSYHAPCIDMWLYSHS----NCPICRSDAT 81 (113)
Q Consensus 26 ~~~~~~~~~C~IC~~~~~~~~~~~~l~--~C~H~fh~~Ci~~wl~~~~----~CP~Cr~~~~ 81 (113)
+....++..|.+|.+. + .+..-. .|...||..|+. +...+ .||.|.-.+.
T Consensus 9 ~~~~~~~~~C~~C~~~---G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C 64 (107)
T 4gne_A 9 EPKQMHEDYCFQCGDG---G-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDEC 64 (107)
T ss_dssp -CCCSSCSSCTTTCCC---S-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTT
T ss_pred CCcCCCCCCCCcCCCC---C-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcC
Confidence 4445677789999842 2 233332 377899999986 43222 3776654443
No 104
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.14 E-value=0.07 Score=31.21 Aligned_cols=51 Identities=27% Similarity=0.412 Sum_probs=31.9
Q ss_pred CCCCccccccccccccccCCeeeecCCCCCcchHHHHHHHHhcCC----CCCCCCC
Q 043177 27 PVGDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHS----NCPICRS 78 (113)
Q Consensus 27 ~~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~----~CP~Cr~ 78 (113)
....++..|.||...-.. ..+..-..|...||..|+..-+...+ .||.|..
T Consensus 11 ~~~~~~~~C~vC~~~~~~-~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 11 AQFIDSYICQVCSRGDED-DKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCCCCSSSCCSGGG-GGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred hhccCCCCCccCCCcCCC-CCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 334556689999986432 22333345888999999864332222 4999855
No 105
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=83.71 E-value=0.074 Score=29.07 Aligned_cols=45 Identities=29% Similarity=0.603 Sum_probs=29.0
Q ss_pred CccccccccccccccCCeeeecCCCCCcchHHHHHHHHhcC----CCCCCCCC
Q 043177 30 DEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSH----SNCPICRS 78 (113)
Q Consensus 30 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~----~~CP~Cr~ 78 (113)
.++..|.||.+. +. +..-..|...||..|+..-+... -.||.|..
T Consensus 6 ~~~~~C~vC~~~---g~-ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 6 KNEDECAVCRDG---GE-LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp SCCCSBSSSSCC---SS-CEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCccCCCC---CC-EEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 456789999874 22 33334588899999987433221 14888854
No 106
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=83.28 E-value=0.082 Score=28.27 Aligned_cols=45 Identities=31% Similarity=0.702 Sum_probs=27.3
Q ss_pred CccccccccccccccCCeeeecCCCCCcchHHHHHHHHhcCC----CCCCCCC
Q 043177 30 DEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHS----NCPICRS 78 (113)
Q Consensus 30 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~----~CP~Cr~ 78 (113)
..+..|.+|... +. +..-..|...||..|+..-+...+ .||.|..
T Consensus 3 ~~~~~C~vC~~~---g~-ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 51 (60)
T 2puy_A 3 IHEDFCSVCRKS---GQ-LLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 51 (60)
T ss_dssp CCCSSCTTTCCC---SS-CEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHH
T ss_pred CCCCCCcCCCCC---Cc-EEEcCCCCcCEECCcCCCCcCCCCCCceEChhccC
Confidence 346689999874 22 333335888999999864332211 3666643
No 107
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=83.14 E-value=0.83 Score=29.29 Aligned_cols=48 Identities=25% Similarity=0.587 Sum_probs=31.3
Q ss_pred CccccccccccccccCCeeeecCCCCCcchHHHHHHHH-----hcCCCCCCCCC
Q 043177 30 DEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWL-----YSHSNCPICRS 78 (113)
Q Consensus 30 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl-----~~~~~CP~Cr~ 78 (113)
++...| +|......+........|...||..|+.--. ...-.||.|+.
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 456678 9998765444344444588999999985221 12346999975
No 108
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=82.88 E-value=1.2 Score=23.88 Aligned_cols=43 Identities=21% Similarity=0.478 Sum_probs=28.6
Q ss_pred ccccccccccccCCeeeecCCCCCcchHHHHHHHHhcCCCCCCC
Q 043177 33 GICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHSNCPIC 76 (113)
Q Consensus 33 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~C 76 (113)
..|-.|+..|.+. ....-+.|++.|+.+|=.---..=-.||-|
T Consensus 16 ~~C~~C~~~~~~~-~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQ-HVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTS-EEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCC-ccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 3599999998642 234556799999999954221223358877
No 109
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=82.78 E-value=2.9 Score=24.87 Aligned_cols=34 Identities=32% Similarity=0.627 Sum_probs=22.2
Q ss_pred cccccccccccc-----ccCCeeeecCCCCCcchHHHHH
Q 043177 31 EDGICAVCLSEF-----EEGEELRTLPECLHSYHAPCID 64 (113)
Q Consensus 31 ~~~~C~IC~~~~-----~~~~~~~~l~~C~H~fh~~Ci~ 64 (113)
....|.+|+..- ..++.+..-..|+..||..|+.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 345799998752 1222333334599999999995
No 110
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=82.14 E-value=2 Score=23.92 Aligned_cols=49 Identities=24% Similarity=0.445 Sum_probs=29.9
Q ss_pred CccccccccccccccCCeeeec-CCCCCcchHHHHHHHHh---------cCCCCCCCCCC
Q 043177 30 DEDGICAVCLSEFEEGEELRTL-PECLHSYHAPCIDMWLY---------SHSNCPICRSD 79 (113)
Q Consensus 30 ~~~~~C~IC~~~~~~~~~~~~l-~~C~H~fh~~Ci~~wl~---------~~~~CP~Cr~~ 79 (113)
++...| ||......+..|.-- +.|...||..|+.---. ....||.|+..
T Consensus 14 ~~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 14 EIKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 345567 898875444444322 04889999999853211 23458888653
No 111
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=81.80 E-value=0.34 Score=23.05 Aligned_cols=15 Identities=27% Similarity=0.651 Sum_probs=11.8
Q ss_pred Ccccccccccccccc
Q 043177 30 DEDGICAVCLSEFEE 44 (113)
Q Consensus 30 ~~~~~C~IC~~~~~~ 44 (113)
.+...||||+..+..
T Consensus 3 ~EGFiCP~C~~~l~s 17 (34)
T 3mjh_B 3 SEGFICPQCMKSLGS 17 (34)
T ss_dssp SEEEECTTTCCEESS
T ss_pred CcccCCcHHHHHcCC
Confidence 345789999998876
No 112
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=81.54 E-value=4.2 Score=23.57 Aligned_cols=52 Identities=21% Similarity=0.480 Sum_probs=34.9
Q ss_pred ccccccccccccccCC--eeeec-CCCCCcchHHHHHHHH-hcCCCCCCCCCCCCC
Q 043177 31 EDGICAVCLSEFEEGE--ELRTL-PECLHSYHAPCIDMWL-YSHSNCPICRSDATP 82 (113)
Q Consensus 31 ~~~~C~IC~~~~~~~~--~~~~l-~~C~H~fh~~Ci~~wl-~~~~~CP~Cr~~~~~ 82 (113)
....|.||=+++.... .+++. ..|+--+|+.|+.--. ..+..||.|+.....
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 4568999999865321 22222 2466668999987544 466779999988853
No 113
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=81.39 E-value=3.2 Score=25.68 Aligned_cols=46 Identities=24% Similarity=0.406 Sum_probs=30.3
Q ss_pred CCccccccccccccccCCeeeecCCCCCcchHHHHHHHH------hc-----CCCCCCCCC
Q 043177 29 GDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWL------YS-----HSNCPICRS 78 (113)
Q Consensus 29 ~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl------~~-----~~~CP~Cr~ 78 (113)
+..+..|.||.+. ..+..-..|-..||..|+.+-+ .. .=.|++|+.
T Consensus 54 Dg~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 54 DGMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp TSCBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 4456679999875 2233334588999999998752 11 125999954
No 114
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=80.99 E-value=0.66 Score=25.54 Aligned_cols=49 Identities=22% Similarity=0.314 Sum_probs=30.2
Q ss_pred CCccccccccccccccCCeeeecCCCCCcchHHHHHHHH----hcCCCCCCCCC
Q 043177 29 GDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWL----YSHSNCPICRS 78 (113)
Q Consensus 29 ~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl----~~~~~CP~Cr~ 78 (113)
..+...| ||.....++...+.-..|...||..|+.--. .....||.|+.
T Consensus 13 ~~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~ 65 (72)
T 1wee_A 13 DNWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIE 65 (72)
T ss_dssp CSSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHH
T ss_pred CCcceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccC
Confidence 4455678 7988765554334444588899999985321 12234887754
No 115
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=80.20 E-value=1.1 Score=25.41 Aligned_cols=37 Identities=14% Similarity=0.248 Sum_probs=24.4
Q ss_pred CCccccccccccccccCCeeeecCCCCCcchHHHHHH
Q 043177 29 GDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDM 65 (113)
Q Consensus 29 ~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~ 65 (113)
+.+...|.+|...|..-..--.-..||++||..|...
T Consensus 18 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 18 DEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 3456689999999975321112224999999888543
No 116
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=79.60 E-value=1 Score=25.48 Aligned_cols=35 Identities=26% Similarity=0.515 Sum_probs=23.3
Q ss_pred CccccccccccccccCCeeeecCCCCCcchHHHHH
Q 043177 30 DEDGICAVCLSEFEEGEELRTLPECLHSYHAPCID 64 (113)
Q Consensus 30 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~ 64 (113)
.+...|.+|...|..-..--.-..||.+||..|..
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~ 51 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSS 51 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGC
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEChHHhC
Confidence 44557999999997532111222499999988864
No 117
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=79.31 E-value=0.92 Score=27.84 Aligned_cols=35 Identities=20% Similarity=0.364 Sum_probs=23.1
Q ss_pred CccccccccccccccCCeeeecCCCCCcchHHHHH
Q 043177 30 DEDGICAVCLSEFEEGEELRTLPECLHSYHAPCID 64 (113)
Q Consensus 30 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~ 64 (113)
.+...|.+|...|..-..-.....||++||..|..
T Consensus 67 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~ 101 (125)
T 1joc_A 67 NEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSA 101 (125)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSC
T ss_pred CCCCCCcCcCCccccccccccCCCCCeEEChHHhC
Confidence 34557999999987532111222599999988753
No 118
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=79.21 E-value=1.5 Score=25.20 Aligned_cols=37 Identities=14% Similarity=0.337 Sum_probs=24.4
Q ss_pred CCccccccccccccccCCeeeecCCCCCcchHHHHHH
Q 043177 29 GDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDM 65 (113)
Q Consensus 29 ~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~ 65 (113)
..+...|.+|...|..-..--.-..||.+||..|...
T Consensus 6 ~~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 6 SGMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CCcCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 3445589999999875321112224999999988654
No 119
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=77.92 E-value=1.1 Score=25.79 Aligned_cols=36 Identities=17% Similarity=0.348 Sum_probs=23.9
Q ss_pred CccccccccccccccCCeeeecCCCCCcchHHHHHH
Q 043177 30 DEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDM 65 (113)
Q Consensus 30 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~ 65 (113)
.+...|.+|...|..-..-.....||++||..|...
T Consensus 18 ~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~ 53 (90)
T 3t7l_A 18 SEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNR 53 (90)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred ccCCcCcCCCCcccchhhCccccCCCCEECCcccCC
Confidence 345579999999874321122235999999888654
No 120
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=77.47 E-value=0.37 Score=31.70 Aligned_cols=45 Identities=27% Similarity=0.549 Sum_probs=28.8
Q ss_pred cccccccccccccCCeeeecCCCCCcchHHHHHHHHhcC----CCCCCCCCCC
Q 043177 32 DGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSH----SNCPICRSDA 80 (113)
Q Consensus 32 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~----~~CP~Cr~~~ 80 (113)
+..|.+|.+. +. +.....|...||..|+..-+... -.||.|+..-
T Consensus 2 ~~~C~~C~~~---g~-ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 2 ATICRVCQKP---GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCCBTTTCCC---SS-CCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CCcCccCCCC---Cc-eeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 3469999864 22 33333477889999996543222 2599998753
No 121
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=77.30 E-value=3.1 Score=30.33 Aligned_cols=48 Identities=17% Similarity=0.397 Sum_probs=30.2
Q ss_pred cccccccccccccCCeeeecCCCCCc--chHHHHHHHHhcCC--CCCCCCCCCCC
Q 043177 32 DGICAVCLSEFEEGEELRTLPECLHS--YHAPCIDMWLYSHS--NCPICRSDATP 82 (113)
Q Consensus 32 ~~~C~IC~~~~~~~~~~~~l~~C~H~--fh~~Ci~~wl~~~~--~CP~Cr~~~~~ 82 (113)
...|+|=...+..+ ++... |.|. |-..-+.......+ .||+|...+..
T Consensus 249 SL~CPlS~~ri~~P--vRg~~-C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~ 300 (371)
T 3i2d_A 249 SLQCPISYTRMKYP--SKSIN-CKHLQCFDALWFLHSQLQIPTWQCPVCQIDIAL 300 (371)
T ss_dssp ESBCTTTSSBCSSE--EEETT-CCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCG
T ss_pred eecCCCcccccccc--CcCCc-CCCcceECHHHHHHHhhcCCceeCCCCCcccCH
Confidence 56788877777653 44454 9997 55544444433333 49999887643
No 122
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=75.87 E-value=1.1 Score=24.41 Aligned_cols=49 Identities=22% Similarity=0.437 Sum_probs=28.9
Q ss_pred CCCccccccccccccccCCeeeecCCCCCcchHHHHHHHHh---cCCCCCCCCC
Q 043177 28 VGDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLY---SHSNCPICRS 78 (113)
Q Consensus 28 ~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~---~~~~CP~Cr~ 78 (113)
...+...| ||..... +...+.-..|...||..|+.--.. ....||.|+.
T Consensus 15 ~~~~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 15 YFQGLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTTTCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCCCceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 34556678 9988665 332333335889999999853211 2224766643
No 123
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=75.48 E-value=1.5 Score=24.18 Aligned_cols=32 Identities=13% Similarity=0.277 Sum_probs=21.1
Q ss_pred ccccccccccccCCeeeecCCCCCcchHHHHH
Q 043177 33 GICAVCLSEFEEGEELRTLPECLHSYHAPCID 64 (113)
Q Consensus 33 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~ 64 (113)
..|.+|...|..-..--.-..||.+||..|..
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 47999999987522111222499999888753
No 124
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.34 E-value=1.4 Score=24.93 Aligned_cols=35 Identities=23% Similarity=0.501 Sum_probs=22.0
Q ss_pred CCccccccccccccccCCeeeecCCCCCcchHHHH
Q 043177 29 GDEDGICAVCLSEFEEGEELRTLPECLHSYHAPCI 63 (113)
Q Consensus 29 ~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci 63 (113)
+.+...|.+|...|..-..--.-..||.+||..|.
T Consensus 11 d~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs 45 (84)
T 1x4u_A 11 TNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCC 45 (84)
T ss_dssp CCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTS
T ss_pred CCCCCcCcCcCCccccchhhhhhcCCCcEEChhhc
Confidence 34455799999998642211111249999987763
No 125
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=75.16 E-value=1.8 Score=23.66 Aligned_cols=34 Identities=24% Similarity=0.379 Sum_probs=25.2
Q ss_pred CCCccccccccccccccCCeeeecCCC-CCcchHHHHHHH
Q 043177 28 VGDEDGICAVCLSEFEEGEELRTLPEC-LHSYHAPCIDMW 66 (113)
Q Consensus 28 ~~~~~~~C~IC~~~~~~~~~~~~l~~C-~H~fh~~Ci~~w 66 (113)
..++..-|.||.++- .++-+. | +-.||..|+...
T Consensus 4 ~~ee~pWC~ICneDA----tlrC~g-CdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 4 GSSGLPWCCICNEDA----TLRCAG-CDGDLYCARCFREG 38 (67)
T ss_dssp SCCCCSSCTTTCSCC----CEEETT-TTSEEECSSHHHHH
T ss_pred cCcCCCeeEEeCCCC----eEEecC-CCCceehHHHHHHH
Confidence 346677899999982 256665 8 679999997653
No 126
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=74.79 E-value=0.46 Score=25.29 Aligned_cols=44 Identities=30% Similarity=0.652 Sum_probs=25.4
Q ss_pred CccccccccccccccCCeeeecCC--CC-CcchHHHHHHHHhc----CCCCCCCCC
Q 043177 30 DEDGICAVCLSEFEEGEELRTLPE--CL-HSYHAPCIDMWLYS----HSNCPICRS 78 (113)
Q Consensus 30 ~~~~~C~IC~~~~~~~~~~~~l~~--C~-H~fh~~Ci~~wl~~----~~~CP~Cr~ 78 (113)
.+...| ||..... + ....-.. |. ..||..|+. +.. .-.||.|+.
T Consensus 7 ~e~~yC-~C~~~~~-g-~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 7 NEPTYC-LCHQVSY-G-EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp -CCEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCcEE-ECCCCCC-C-CeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 345566 9988642 3 2333334 55 689999986 222 224777753
No 127
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=73.83 E-value=8.8 Score=22.79 Aligned_cols=29 Identities=21% Similarity=0.423 Sum_probs=19.0
Q ss_pred CCCCcchHHHHH------HHHhc-----CCCCCCCCCCCC
Q 043177 53 ECLHSYHAPCID------MWLYS-----HSNCPICRSDAT 81 (113)
Q Consensus 53 ~C~H~fh~~Ci~------~wl~~-----~~~CP~Cr~~~~ 81 (113)
.|+..||..|+. .-+.. ...||.|.....
T Consensus 7 ~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~~~ 46 (140)
T 2ku7_A 7 KCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHV 46 (140)
T ss_dssp CCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTTSC
T ss_pred cCCCccCCcccccCHHHHHHHhhccccceeeCcccccccc
Confidence 499999999952 22222 356999965443
No 128
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=73.71 E-value=2.3 Score=28.60 Aligned_cols=34 Identities=15% Similarity=0.343 Sum_probs=22.7
Q ss_pred ccccccccccccccCCeeeecCCCCCcchHHHHH
Q 043177 31 EDGICAVCLSEFEEGEELRTLPECLHSYHAPCID 64 (113)
Q Consensus 31 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~ 64 (113)
.+..|.+|...|..-..-.....||++||..|-.
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~ 196 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSS 196 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCC
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcC
Confidence 3458999999987532112223599999888754
No 129
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=73.70 E-value=5.2 Score=29.00 Aligned_cols=48 Identities=19% Similarity=0.355 Sum_probs=30.7
Q ss_pred cccccccccccccCCeeeecCCCCCc--chHHHHHHHHhcCC--CCCCCCCCCCC
Q 043177 32 DGICAVCLSEFEEGEELRTLPECLHS--YHAPCIDMWLYSHS--NCPICRSDATP 82 (113)
Q Consensus 32 ~~~C~IC~~~~~~~~~~~~l~~C~H~--fh~~Ci~~wl~~~~--~CP~Cr~~~~~ 82 (113)
...|+|=...+..+ .+... |.|. |-..-+.......+ .||+|...+..
T Consensus 215 SL~CPlS~~ri~~P--~Rg~~-C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~ 266 (360)
T 4fo9_A 215 SLMCPLGKMRLTIP--CRAVT-CTHLQCFDAALYLQMNEKKPTWICPVCDKKAAY 266 (360)
T ss_dssp ESBCTTTCSBCSSE--EEETT-CCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCG
T ss_pred eeeCCCccceeccC--CcCCC-CCCCccCCHHHHHHHHhhCCCeECCCCCcccCH
Confidence 45688877777653 44444 9998 65554444444333 49999887753
No 130
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=73.62 E-value=0.45 Score=25.40 Aligned_cols=44 Identities=27% Similarity=0.633 Sum_probs=24.8
Q ss_pred CccccccccccccccCCeeeecCC--CC-CcchHHHHHHHHhc----CCCCCCCCC
Q 043177 30 DEDGICAVCLSEFEEGEELRTLPE--CL-HSYHAPCIDMWLYS----HSNCPICRS 78 (113)
Q Consensus 30 ~~~~~C~IC~~~~~~~~~~~~l~~--C~-H~fh~~Ci~~wl~~----~~~CP~Cr~ 78 (113)
++...| ||..... + ....-.. |. ..||..|+. +.. .-.||.|+.
T Consensus 8 ~e~~~C-~C~~~~~-g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 8 NEPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp -CCEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCCEE-ECCCcCC-C-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 345566 8988632 3 2333334 44 689999986 322 224777743
No 131
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=72.63 E-value=1.3 Score=29.58 Aligned_cols=34 Identities=18% Similarity=0.466 Sum_probs=22.3
Q ss_pred ccccccccccccccCCeeeecCCCCCcchHHHHH
Q 043177 31 EDGICAVCLSEFEEGEELRTLPECLHSYHAPCID 64 (113)
Q Consensus 31 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~ 64 (113)
++..|.+|...|..-..-.....||++||..|..
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~ 193 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTA 193 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSC
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhC
Confidence 3568999999987422112223499999877743
No 132
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=72.47 E-value=0.41 Score=36.09 Aligned_cols=48 Identities=19% Similarity=0.458 Sum_probs=30.4
Q ss_pred CccccccccccccccCCeeeecCCCCCcchHHHHHHHHh-----cCCCCCCCCC
Q 043177 30 DEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLY-----SHSNCPICRS 78 (113)
Q Consensus 30 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~-----~~~~CP~Cr~ 78 (113)
.+...| ||......+...+....|.-.||..|+.---. ..-.||.|+.
T Consensus 35 ~~~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 87 (488)
T 3kv5_D 35 PPPVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAV 87 (488)
T ss_dssp CCCEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHH
T ss_pred CCCeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcC
Confidence 444456 99887653343444445999999999853221 2246999964
No 133
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=72.34 E-value=1.5 Score=27.33 Aligned_cols=34 Identities=15% Similarity=0.283 Sum_probs=22.9
Q ss_pred Ccccccccccccccc--CCeeeecCCCCCcchHHHHH
Q 043177 30 DEDGICAVCLSEFEE--GEELRTLPECLHSYHAPCID 64 (113)
Q Consensus 30 ~~~~~C~IC~~~~~~--~~~~~~l~~C~H~fh~~Ci~ 64 (113)
.++..|.+|...|.- +....-.. |.|.+|..|-.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~-C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCED-CKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTT-TCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCC-CCcccccccCC
Confidence 567789999999842 22333333 88888877743
No 134
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=72.29 E-value=0.64 Score=26.77 Aligned_cols=52 Identities=23% Similarity=0.419 Sum_probs=33.5
Q ss_pred Ccccccccccccccc-CCeeeecCCCCCcchHHHHHHHHh--------cCCCCCCCCCCCC
Q 043177 30 DEDGICAVCLSEFEE-GEELRTLPECLHSYHAPCIDMWLY--------SHSNCPICRSDAT 81 (113)
Q Consensus 30 ~~~~~C~IC~~~~~~-~~~~~~l~~C~H~fh~~Ci~~wl~--------~~~~CP~Cr~~~~ 81 (113)
+++..|.||...-.. ...+..-..|...||..|+..-+. ..-.|+.|.....
T Consensus 14 e~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 14 EMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HHCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 446689999986432 233444456889999999875432 1225999966443
No 135
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=71.55 E-value=0.9 Score=27.19 Aligned_cols=28 Identities=25% Similarity=0.591 Sum_probs=18.0
Q ss_pred CCCCcchHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 043177 53 ECLHSYHAPCIDMWLYSHSNCPICRSDATPSPQ 85 (113)
Q Consensus 53 ~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~ 85 (113)
.||+.|. .-+.....||.|++.....+.
T Consensus 72 ~CG~~F~-----~~~~kPsrCP~CkSe~Ie~P~ 99 (105)
T 2gmg_A 72 KCGFVFK-----AEINIPSRCPKCKSEWIEEPR 99 (105)
T ss_dssp TTCCBCC-----CCSSCCSSCSSSCCCCBCCCC
T ss_pred hCcCeec-----ccCCCCCCCcCCCCCccCCcc
Confidence 5999981 112344569999987655443
No 136
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=70.38 E-value=0.89 Score=33.08 Aligned_cols=38 Identities=13% Similarity=0.152 Sum_probs=0.0
Q ss_pred CccccccccccccccCCeeeecCCCCCcchHHHHHHHH
Q 043177 30 DEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWL 67 (113)
Q Consensus 30 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl 67 (113)
.+...|.+|...|..-..-.....||++||..|-...+
T Consensus 373 ~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~ 410 (434)
T 3mpx_A 373 THVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKY 410 (434)
T ss_dssp --------------------------------------
T ss_pred ccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCee
Confidence 34567999999886422111222499999999986554
No 137
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=70.19 E-value=0.46 Score=26.78 Aligned_cols=43 Identities=30% Similarity=0.606 Sum_probs=23.2
Q ss_pred ccccccccccCCeeeecCCCCCcchHHHHHHHHhcC-----CCCCCCCC
Q 043177 35 CAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSH-----SNCPICRS 78 (113)
Q Consensus 35 C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~-----~~CP~Cr~ 78 (113)
|.||...-.. ..+..-..|...||..|+..-+... =.||.|+.
T Consensus 29 C~vC~~~~d~-~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 29 CHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp BTTTCCCSCG-GGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred CCccCCCCCC-cceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 4455543222 2333334588899999987543221 24777754
No 138
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=70.14 E-value=0.2 Score=30.77 Aligned_cols=48 Identities=17% Similarity=0.413 Sum_probs=27.4
Q ss_pred CccccccccccccccCCeeeecCCCCCcchHHHHHHHHhcCCCCCCCC
Q 043177 30 DEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHSNCPICR 77 (113)
Q Consensus 30 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr 77 (113)
.+...|..|...|..-..--....||.+||..|..........|-.|.
T Consensus 17 ~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~ 64 (120)
T 1y02_A 17 GLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQ 64 (120)
T ss_dssp ---CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHH
T ss_pred cccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHH
Confidence 344579999999874211112225999999999765544445566663
No 139
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=69.94 E-value=0.69 Score=25.47 Aligned_cols=44 Identities=30% Similarity=0.604 Sum_probs=25.0
Q ss_pred cccccccccccCCeeeecCCCCCcchHHHHHHHHhc-----CCCCCCCCC
Q 043177 34 ICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYS-----HSNCPICRS 78 (113)
Q Consensus 34 ~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-----~~~CP~Cr~ 78 (113)
.|.||...-.. ..+..-..|...||..|+..=+.. .=.||.|+.
T Consensus 20 ~C~~C~~~~~~-~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCG-GGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCC-CCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 45566653222 233344458889999998743321 224787764
No 140
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.77 E-value=0.69 Score=26.01 Aligned_cols=44 Identities=30% Similarity=0.553 Sum_probs=26.0
Q ss_pred cccccccccccCCeeeecCCCCCcchHHHHHHHHhc-----CCCCCCCCC
Q 043177 34 ICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYS-----HSNCPICRS 78 (113)
Q Consensus 34 ~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-----~~~CP~Cr~ 78 (113)
.|.||...-..+ .+..-..|...||..|+..-+.. .=.||.|..
T Consensus 28 ~C~vC~~~~~~~-~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPN-MQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCST-TEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCC-CEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 678888643222 33344458889999998743321 124777753
No 141
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=67.12 E-value=2.5 Score=26.93 Aligned_cols=32 Identities=22% Similarity=0.474 Sum_probs=22.5
Q ss_pred cccccccccccccc--CCeeeecCCCCCcchHHHH
Q 043177 31 EDGICAVCLSEFEE--GEELRTLPECLHSYHAPCI 63 (113)
Q Consensus 31 ~~~~C~IC~~~~~~--~~~~~~l~~C~H~fh~~Ci 63 (113)
++..|.+|...|.- +....... |+|.+|..|-
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~-C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLE-CSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTT-TCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCCC-CCchhhcccc
Confidence 57799999998753 22333334 8999988875
No 142
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=66.89 E-value=3.3 Score=22.02 Aligned_cols=41 Identities=20% Similarity=0.405 Sum_probs=27.6
Q ss_pred ccccccccccccCCeeeecCCCCCcchHHHHHHHHhcCCCCCCCCCCCCCC
Q 043177 33 GICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHSNCPICRSDATPS 83 (113)
Q Consensus 33 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 83 (113)
..|..|-..+...+.+... -+..||..|+ .|-.|+..+...
T Consensus 6 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~~ 46 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEY--KGSSWHETCF--------ICHRCQQPIGTK 46 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEE--TTEEEETTTT--------CCSSSCCCCCSS
T ss_pred CCCccCCCcccCCceEEEE--CcCeecccCC--------cccccCCccCCC
Confidence 4699999888764333332 5677887775 488888777543
No 143
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=66.25 E-value=7.4 Score=21.33 Aligned_cols=48 Identities=19% Similarity=0.454 Sum_probs=29.4
Q ss_pred ccccccccccccccCCeeeecCCCCCcchHHHHHHHHh-----cCCCCCCCCCC
Q 043177 31 EDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLY-----SHSNCPICRSD 79 (113)
Q Consensus 31 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~-----~~~~CP~Cr~~ 79 (113)
+...| ||...+..+...+.-..|.-.||..|+.--.. ....||.|+..
T Consensus 9 ~~~yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 9 VPVYC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred CeeEE-ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 34445 89887653333334445889999999953221 23469998653
No 144
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=63.33 E-value=2.5 Score=22.58 Aligned_cols=40 Identities=18% Similarity=0.378 Sum_probs=26.5
Q ss_pred ccccccccccccCCeeeecCCCCCcchHHHHHHHHhcCCCCCCCCCCCCC
Q 043177 33 GICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHSNCPICRSDATP 82 (113)
Q Consensus 33 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 82 (113)
..|..|-..+...+.+.. .-+..||..|+ .|-.|...+..
T Consensus 6 ~~C~~C~~~I~~~~~~~~--a~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1wyh_A 6 SGCSACGETVMPGSRKLE--YGGQTWHEHCF--------LCSGCEQPLGS 45 (72)
T ss_dssp CBCSSSCCBCCSSSCEEC--STTCCEETTTC--------BCTTTCCBTTT
T ss_pred CCCccCCCccccCccEEE--ECccccCcccC--------eECCCCCcCCC
Confidence 468889888775433322 25678888775 48888777654
No 145
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=62.87 E-value=10 Score=24.30 Aligned_cols=36 Identities=17% Similarity=0.528 Sum_probs=24.9
Q ss_pred CCccccccccccccccCCeeeecC--CCCCcchHHHHHHHHh
Q 043177 29 GDEDGICAVCLSEFEEGEELRTLP--ECLHSYHAPCIDMWLY 68 (113)
Q Consensus 29 ~~~~~~C~IC~~~~~~~~~~~~l~--~C~H~fh~~Ci~~wl~ 68 (113)
+..+..|.||-+. ..+..-. .|...||..||..++.
T Consensus 76 DG~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG 113 (159)
T 3a1b_A 76 DGYQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVG 113 (159)
T ss_dssp TSSBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTC
T ss_pred CCCcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcC
Confidence 3446679998874 2343332 4788999999998873
No 146
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.99 E-value=5.4 Score=21.76 Aligned_cols=41 Identities=17% Similarity=0.451 Sum_probs=28.4
Q ss_pred ccccccccccccCCeeeecCCCCCcchHHHHHHHHhcCCCCCCCCCCCCCC
Q 043177 33 GICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHSNCPICRSDATPS 83 (113)
Q Consensus 33 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 83 (113)
..|..|-..+..++.+... -+..||..|+ .|-.|+..+...
T Consensus 16 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~~ 56 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNVEY--KGTVWHKDCF--------TCSNCKQVIGTG 56 (82)
T ss_dssp CBCSSSCCBCCSSSCEEEC--SSCEEETTTC--------CCSSSCCCCTTS
T ss_pred CcCccCCcccccCceEEEE--CccccccccC--------chhhCCCccCCC
Confidence 4799999988754443322 5678898776 488888877543
No 147
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=59.77 E-value=3.2 Score=24.50 Aligned_cols=42 Identities=14% Similarity=0.305 Sum_probs=24.2
Q ss_pred ccccccccccccccCCeeeecCCCCCcchHHHHHHHHhcCCCCCCCCCCCC
Q 043177 31 EDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHSNCPICRSDAT 81 (113)
Q Consensus 31 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 81 (113)
.+..||+|...+.-......-..|.-.| .....||-|..++.
T Consensus 31 M~~~CP~Cq~eL~~~g~~~hC~~C~~~f---------~~~a~CPdC~q~Le 72 (101)
T 2jne_A 31 MELHCPQCQHVLDQDNGHARCRSCGEFI---------EMKALCPDCHQPLQ 72 (101)
T ss_dssp CCCBCSSSCSBEEEETTEEEETTTCCEE---------EEEEECTTTCSBCE
T ss_pred ccccCccCCCcceecCCEEECccccchh---------hccccCcchhhHHH
Confidence 3468999998775322122222244333 34456999988764
No 148
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=58.38 E-value=3.1 Score=24.88 Aligned_cols=33 Identities=30% Similarity=0.650 Sum_probs=21.0
Q ss_pred ccccccccccc------cCCeeeecCCCCCcchHHHHHH
Q 043177 33 GICAVCLSEFE------EGEELRTLPECLHSYHAPCIDM 65 (113)
Q Consensus 33 ~~C~IC~~~~~------~~~~~~~l~~C~H~fh~~Ci~~ 65 (113)
..|.||+..-. .+.....-..|+..||..|+..
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~ 40 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQF 40 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCC
Confidence 36889987541 1122333335899999999864
No 149
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=58.03 E-value=4.7 Score=23.86 Aligned_cols=11 Identities=18% Similarity=0.827 Sum_probs=10.1
Q ss_pred chHHHHHHHHh
Q 043177 58 YHAPCIDMWLY 68 (113)
Q Consensus 58 fh~~Ci~~wl~ 68 (113)
||+.|+..|+.
T Consensus 43 FCRNCLskWy~ 53 (105)
T 2o35_A 43 FCRNCLSNWYR 53 (105)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999984
No 150
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=57.78 E-value=4.7 Score=23.79 Aligned_cols=11 Identities=27% Similarity=0.996 Sum_probs=10.1
Q ss_pred chHHHHHHHHh
Q 043177 58 YHAPCIDMWLY 68 (113)
Q Consensus 58 fh~~Ci~~wl~ 68 (113)
||+.|+..|+.
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999984
No 151
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.31 E-value=5.2 Score=21.23 Aligned_cols=39 Identities=18% Similarity=0.393 Sum_probs=24.1
Q ss_pred ccccccccccccCCeeeecCCCCCcchHHHHHHHHhcCCCCCCCCCCCC
Q 043177 33 GICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHSNCPICRSDAT 81 (113)
Q Consensus 33 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 81 (113)
..|..|-..+...+..... -+..||..|+ .|-.|...+.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1x61_A 6 SGCGGCGEDVVGDGAGVVA--LDRVFHVGCF--------VCSTCRAQLR 44 (72)
T ss_dssp CCCSSSCSCCCSSSCCEEC--SSSEECTTTC--------BCSSSCCBCT
T ss_pred CCCccCCCccCCCceEEEE--CCCeEcccCC--------cccccCCcCC
Confidence 4688888776543222221 5677887765 4778877764
No 152
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.30 E-value=6.2 Score=21.19 Aligned_cols=41 Identities=22% Similarity=0.509 Sum_probs=27.6
Q ss_pred cccccccccccccCCeeeecCCCCCcchHHHHHHHHhcCCCCCCCCCCCCC
Q 043177 32 DGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHSNCPICRSDATP 82 (113)
Q Consensus 32 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 82 (113)
...|..|...+...+.+... -+..||..|+ .|-.|...+..
T Consensus 11 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~ 51 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPE 51 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEEE--TTEEECTTTC--------CCTTTCCCCGG
T ss_pred CCCchhcCCccCCCceEEEe--CccEeccccC--------eECCCCCCCCC
Confidence 45799999988644433222 5677888775 48888777654
No 153
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=55.07 E-value=1.4 Score=29.89 Aligned_cols=44 Identities=30% Similarity=0.604 Sum_probs=23.4
Q ss_pred cccccccccccCCeeeecCCCCCcchHHHHHHHHhc-----CCCCCCCCC
Q 043177 34 ICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYS-----HSNCPICRS 78 (113)
Q Consensus 34 ~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-----~~~CP~Cr~ 78 (113)
.|.+|...-.. ..+.....|...||..|+..=+.. .=.||.|..
T Consensus 176 ~C~vC~~~~~~-~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCCC-CCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 57777763222 223333458889999999743321 124888864
No 154
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=54.76 E-value=3 Score=22.58 Aligned_cols=11 Identities=18% Similarity=0.513 Sum_probs=5.4
Q ss_pred ccccccccccc
Q 043177 34 ICAVCLSEFEE 44 (113)
Q Consensus 34 ~C~IC~~~~~~ 44 (113)
.|..|...+..
T Consensus 29 ~C~~C~~~L~~ 39 (76)
T 1iml_A 29 KCEKCGKTLTS 39 (76)
T ss_dssp BCTTTCCBCCT
T ss_pred CccccCccCCC
Confidence 45555555443
No 155
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.50 E-value=3.3 Score=22.42 Aligned_cols=40 Identities=23% Similarity=0.522 Sum_probs=29.1
Q ss_pred cccccccccccccCCeeeecCCCCCcchHHHHHHHHhcCCCCCCCCCCCCC
Q 043177 32 DGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHSNCPICRSDATP 82 (113)
Q Consensus 32 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 82 (113)
...|..|-+.+..++.+.. -+..||..|+ .|..|+..+..
T Consensus 9 ~~~C~~C~~~I~~~~~v~a---~~~~~H~~CF--------~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSS---LGKDWHKFCL--------KCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEE---TTEEEETTTC--------BCSSSCCBCCT
T ss_pred CCCCcCCCCEeECCeEEEE---CCeEeeCCCC--------CCCCCCCccCC
Confidence 3579999998876554432 5778898776 48899887764
No 156
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.26 E-value=4.2 Score=21.66 Aligned_cols=39 Identities=23% Similarity=0.548 Sum_probs=26.3
Q ss_pred cccccccccccc--CCeeeecCCCCCcchHHHHHHHHhcCCCCCCCCCCCC
Q 043177 33 GICAVCLSEFEE--GEELRTLPECLHSYHAPCIDMWLYSHSNCPICRSDAT 81 (113)
Q Consensus 33 ~~C~IC~~~~~~--~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 81 (113)
..|..|-..+.. ...+... -+..||..|+ .|-.|+..+.
T Consensus 6 ~~C~~C~~~I~~~~~~~~~~a--~~~~wH~~CF--------~C~~C~~~L~ 46 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKYISF--EERQWHNDCF--------NCKKCSLSLV 46 (72)
T ss_dssp CSBTTTTBCCCCSSSCSCEEC--SSCEECTTTC--------BCSSSCCBCT
T ss_pred CCCcCCCccccCCCCcceEEE--CCcccCcccC--------EeccCCCcCC
Confidence 468889888764 2222222 5778888776 4888888775
No 157
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.78 E-value=15 Score=19.86 Aligned_cols=47 Identities=21% Similarity=0.448 Sum_probs=25.3
Q ss_pred CccccccccccccccCCeeeecCCCC---CcchHHHHHHHH--hcCCCCCCCCCC
Q 043177 30 DEDGICAVCLSEFEEGEELRTLPECL---HSYHAPCIDMWL--YSHSNCPICRSD 79 (113)
Q Consensus 30 ~~~~~C~IC~~~~~~~~~~~~l~~C~---H~fh~~Ci~~wl--~~~~~CP~Cr~~ 79 (113)
++...| ||.... .+..+. -..|. ..||..|+.--. ...-.||.|+..
T Consensus 4 ~~~~yC-~C~~~~-~g~MI~-CD~cdC~~~WfH~~Cvgl~~~p~~~w~Cp~C~~~ 55 (70)
T 1x4i_A 4 GSSGYC-ICNQVS-YGEMVG-CDNQDCPIEWFHYGCVGLTEAPKGKWYCPQCTAA 55 (70)
T ss_dssp SCCCCS-TTSCCC-CSSEEC-CSCTTCSCCCEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCeEE-EcCCCC-CCCEeE-eCCCCCCccCCcccccccCcCCCCCEECCCCCcc
Confidence 345566 687753 333332 22343 689999996211 112248888543
No 158
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=52.72 E-value=4.9 Score=21.14 Aligned_cols=42 Identities=21% Similarity=0.500 Sum_probs=29.1
Q ss_pred cccccccccccccCCeeeecCCCCCcchHHHHHHHHhcCCCCCCCCCCCCCC
Q 043177 32 DGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHSNCPICRSDATPS 83 (113)
Q Consensus 32 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 83 (113)
...|..|...+...+.+... =+..||..|+ .|-.|...+...
T Consensus 11 ~~~C~~C~~~i~~~e~~~~~--~~~~~H~~CF--------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPEG 52 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEEE--TTEEEETTTS--------SCTTTCCCCGGG
T ss_pred CccchhcCccccCCceEEEe--CcCeeCcCCC--------cccCCCCCCCCC
Confidence 45799999988765544332 5677888776 488888777543
No 159
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.55 E-value=8.7 Score=21.12 Aligned_cols=43 Identities=26% Similarity=0.533 Sum_probs=29.3
Q ss_pred ccccccccccccccCCeeeecCCCCCcchHHHHHHHHhcCCCCCCCCCCCCCCC
Q 043177 31 EDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHSNCPICRSDATPSP 84 (113)
Q Consensus 31 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 84 (113)
....|..|-..+...+.+. . -+..||..|+ .|-.|+..+....
T Consensus 14 ~~~~C~~C~~~I~~~e~v~--a-~~~~wH~~CF--------~C~~C~~~L~~~~ 56 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLC--V-NGHFFHRSCF--------RCHTCEATLWPGG 56 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCC--B-TTBCCBTTTC--------BCSSSCCBCCTTS
T ss_pred CCCCCcccCCCcccceEEE--E-CCCeeCCCcC--------EEcCCCCCcCCCc
Confidence 3457999999876544333 1 5678898886 4888887775443
No 160
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=52.48 E-value=9.2 Score=21.76 Aligned_cols=34 Identities=18% Similarity=0.493 Sum_probs=20.6
Q ss_pred cccccccccccccCCeeee-cCCCCCcchHHHHHHH
Q 043177 32 DGICAVCLSEFEEGEELRT-LPECLHSYHAPCIDMW 66 (113)
Q Consensus 32 ~~~C~IC~~~~~~~~~~~~-l~~C~H~fh~~Ci~~w 66 (113)
...|.||...- .|..+.- ...|.-.||..|...-
T Consensus 17 ~l~C~iC~~~~-~GAciqC~~~~C~~~fHv~CA~~a 51 (87)
T 2lq6_A 17 KLTCYLCKQKG-VGASIQCHKANCYTAFHVTCAQKA 51 (87)
T ss_dssp CCCBTTTTBCC-SSCEEECSCTTTCCEEEHHHHHHH
T ss_pred cCCCcCCCCCC-CcEeEecCCCCCCCcCcHHHHHHC
Confidence 44799997641 1222221 1247788999998753
No 161
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=51.52 E-value=9.5 Score=21.62 Aligned_cols=12 Identities=33% Similarity=0.708 Sum_probs=6.7
Q ss_pred cccccccccccc
Q 043177 33 GICAVCLSEFEE 44 (113)
Q Consensus 33 ~~C~IC~~~~~~ 44 (113)
..|+.|...+..
T Consensus 3 ~~CP~C~~~l~~ 14 (81)
T 2jrp_A 3 ITCPVCHHALER 14 (81)
T ss_dssp CCCSSSCSCCEE
T ss_pred CCCCCCCCcccc
Confidence 356666665543
No 162
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=51.34 E-value=14 Score=27.01 Aligned_cols=46 Identities=22% Similarity=0.482 Sum_probs=30.0
Q ss_pred CccccccccccccccCCeeeecC--CCCCcchHHHHHHHHhcC----------CCCCCCCCC
Q 043177 30 DEDGICAVCLSEFEEGEELRTLP--ECLHSYHAPCIDMWLYSH----------SNCPICRSD 79 (113)
Q Consensus 30 ~~~~~C~IC~~~~~~~~~~~~l~--~C~H~fh~~Ci~~wl~~~----------~~CP~Cr~~ 79 (113)
..+..|.+|-+.- .+.... .|...||..||..++... =.|=+|...
T Consensus 91 G~~~yCr~C~~Gg----~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 91 GYQSYCSICCSGE----TLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SSBCSCTTTCCCS----SCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CCcccceEcCCCC----eEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 3466788887642 233333 588999999999887221 258888543
No 163
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.38 E-value=5.5 Score=21.49 Aligned_cols=39 Identities=21% Similarity=0.547 Sum_probs=26.1
Q ss_pred cccccccccccc--CCeeeecCCCCCcchHHHHHHHHhcCCCCCCCCCCCC
Q 043177 33 GICAVCLSEFEE--GEELRTLPECLHSYHAPCIDMWLYSHSNCPICRSDAT 81 (113)
Q Consensus 33 ~~C~IC~~~~~~--~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 81 (113)
..|..|-..+.. ....... -+..||..|+ .|-.|+..+.
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a--~~~~wH~~CF--------~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICF--QDSQWHSECF--------NCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEE--TTEEEEGGGC--------BCTTTCCBCS
T ss_pred CCCccCCCcccCCCCceeEEE--CCcccCcccC--------ChhhCCCcCC
Confidence 468899888764 2223222 5678998886 4888877765
No 164
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=49.54 E-value=6.9 Score=20.88 Aligned_cols=16 Identities=25% Similarity=0.887 Sum_probs=11.6
Q ss_pred Ccccccccccc-ccccC
Q 043177 30 DEDGICAVCLS-EFEEG 45 (113)
Q Consensus 30 ~~~~~C~IC~~-~~~~~ 45 (113)
.+...|.||+. .|.++
T Consensus 7 ~d~~~C~iC~KTKFADG 23 (62)
T 2a20_A 7 GDAPTCGICHKTKFADG 23 (62)
T ss_dssp SCCCCCSSSSCSCCCSS
T ss_pred CCcchhhhhccceeccC
Confidence 45568999998 56554
No 165
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=49.46 E-value=16 Score=21.62 Aligned_cols=50 Identities=6% Similarity=-0.055 Sum_probs=32.1
Q ss_pred cccccccccccc-CCeeeecCCCCCcchHHHHHHHHhcCCCCCCCCCCCCCCC
Q 043177 33 GICAVCLSEFEE-GEELRTLPECLHSYHAPCIDMWLYSHSNCPICRSDATPSP 84 (113)
Q Consensus 33 ~~C~IC~~~~~~-~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 84 (113)
..|..|...+.+ +.... . .=+..||..|....+.....|-.|...+....
T Consensus 33 F~C~~C~~~L~~~~~~~~-~-~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~~ 83 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSY-T-KSGMILCRNDYIRLFGNSGAGGSGGHMGSGGD 83 (122)
T ss_dssp HCCSSSCCCTTTSEECCE-E-ETTEEECHHHHHHHHCCCCSSSCSSCCSCCEE
T ss_pred CCcCCCCCcccccCCeEE-E-ECCeeecHHHHHHHcCCCCccccCCCCcCchh
Confidence 457777777752 11111 2 15667888888776655558999988887543
No 166
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=49.40 E-value=4.3 Score=23.45 Aligned_cols=46 Identities=17% Similarity=0.392 Sum_probs=25.2
Q ss_pred CCccccccccccccccCCeeeecCCCC---CcchHHHHHHHH--hcCCCCCC-CC
Q 043177 29 GDEDGICAVCLSEFEEGEELRTLPECL---HSYHAPCIDMWL--YSHSNCPI-CR 77 (113)
Q Consensus 29 ~~~~~~C~IC~~~~~~~~~~~~l~~C~---H~fh~~Ci~~wl--~~~~~CP~-Cr 77 (113)
.++...| ||..... +..+ .-..|. ..||..|+.--. ...-.||. |+
T Consensus 23 ~~~~~yC-iC~~~~~-g~MI-~CD~c~C~~eWfH~~CVgl~~~p~~~W~Cp~cC~ 74 (90)
T 2jmi_A 23 NQEEVYC-FCRNVSY-GPMV-ACDNPACPFEWFHYGCVGLKQAPKGKWYCSKDCK 74 (90)
T ss_dssp -CCSCCS-TTTCCCS-SSEE-CCCSSSCSCSCEETTTSSCSSCTTSCCCSSHHHH
T ss_pred CCCCcEE-EeCCCCC-CCEE-EecCCCCccccCcCccCCCCcCCCCCccCChhhc
Confidence 3455667 9987432 3333 223344 689999985211 12234888 75
No 167
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.19 E-value=7 Score=21.50 Aligned_cols=40 Identities=28% Similarity=0.598 Sum_probs=28.5
Q ss_pred ccccccccccccccCCeeeecCCCCCcchHHHHHHHHhcCCCCCCCCCCCC
Q 043177 31 EDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHSNCPICRSDAT 81 (113)
Q Consensus 31 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 81 (113)
....|.-|-..+..+..+.. -+..||..|+ .|-.|+..+.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a---~~~~wH~~CF--------~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA---LDKQWHVSCF--------KCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE---TTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEE---CCcccccccC--------CcCcCCCCcC
Confidence 45579999998875544432 5678888776 4888987775
No 168
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=46.45 E-value=4 Score=18.49 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=15.8
Q ss_pred ccccccccccccCCeeeecCCCCCcchHHH
Q 043177 33 GICAVCLSEFEEGEELRTLPECLHSYHAPC 62 (113)
Q Consensus 33 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~C 62 (113)
..|+.|-..+-..+.+. .-|..||..|
T Consensus 4 ~~C~~C~k~Vy~~Ek~~---~~g~~~Hk~C 30 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN---CLDKFWHKAC 30 (31)
T ss_dssp CBCSSSCSBCCGGGCCC---SSSSCCCGGG
T ss_pred CcCCccCCEEecceeEE---ECCeEecccC
Confidence 36888877654433222 2466777766
No 169
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.82 E-value=11 Score=20.50 Aligned_cols=39 Identities=15% Similarity=0.268 Sum_probs=27.2
Q ss_pred ccccccccccccccCCeeeecCCCCCcchHHHHHHHHhcCCCCCCCCCCCC
Q 043177 31 EDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHSNCPICRSDAT 81 (113)
Q Consensus 31 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 81 (113)
....|..|-..+.. .. +.. -+..||..|+ .|-.|+..+.
T Consensus 14 ~~~~C~~C~~~I~~-~~--~~a-~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 14 KLPMCDKCGTGIVG-VF--VKL-RDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCCCCSSSCCCCCS-SC--EEC-SSCEECTTTT--------SCSSSCCCHH
T ss_pred CCCccccCCCCccC-cE--EEE-CcceeCcCcC--------eeCCCCCCCC
Confidence 34579999998765 22 222 6788998886 4888877763
No 170
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.81 E-value=16 Score=20.31 Aligned_cols=42 Identities=19% Similarity=0.481 Sum_probs=29.3
Q ss_pred ccccccccccccccCCeeeecCCCCCcchHHHHHHHHhcCCCCCCCCCCCCCC
Q 043177 31 EDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHSNCPICRSDATPS 83 (113)
Q Consensus 31 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 83 (113)
....|..|-..+...+.+. . -+..||..|+ .|-.|...+...
T Consensus 14 ~~~~C~~C~~~I~~~~~v~--a-~~~~~H~~CF--------~C~~C~~~L~~~ 55 (91)
T 2d8y_A 14 ARETCVECQKTVYPMERLL--A-NQQVFHISCF--------RCSYCNNKLSLG 55 (91)
T ss_dssp SSCBCTTTCCBCCTTSEEE--C-SSSEEETTTC--------BCTTTCCBCCTT
T ss_pred CCCcCccCCCccCCceeEE--E-CCCEECCCCC--------eeCCCCCCCCCC
Confidence 3457999999887654432 2 6778888876 488887777654
No 171
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=44.55 E-value=28 Score=19.15 Aligned_cols=42 Identities=17% Similarity=0.300 Sum_probs=29.3
Q ss_pred CccccccccccccccCCeeeecCCCCCcchHHHHHHHHhcCCCCCCCCCCCCCC
Q 043177 30 DEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHSNCPICRSDATPS 83 (113)
Q Consensus 30 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 83 (113)
.....|..|-+.+.. .. +.. -+..||..|+ .|-.|...+...
T Consensus 23 ~~~~~C~~C~~~I~~-~~--~~a-~~~~~H~~CF--------~C~~C~~~L~~~ 64 (89)
T 1x64_A 23 QRMPLCDKCGSGIVG-AV--VKA-RDKYRHPECF--------VCADCNLNLKQK 64 (89)
T ss_dssp CSCCBCTTTCCBCCS-CC--EES-SSCEECTTTC--------CCSSSCCCTTTS
T ss_pred CcCCCcccCCCEecc-cE--EEE-CCceECccCC--------EecCCCCCCCCC
Confidence 345679999998775 22 222 6788998876 488998877543
No 172
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=41.04 E-value=19 Score=20.23 Aligned_cols=25 Identities=12% Similarity=0.206 Sum_probs=13.3
Q ss_pred CCcchHHHHHHHHhcCCCCCCCCCCCC
Q 043177 55 LHSYHAPCIDMWLYSHSNCPICRSDAT 81 (113)
Q Consensus 55 ~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 81 (113)
+..||..|... .....|..|...+.
T Consensus 53 g~~yC~~cy~~--~~~~~C~~C~~~I~ 77 (101)
T 2cup_A 53 NKILCNKCTTR--EDSPKCKGCFKAIV 77 (101)
T ss_dssp TEEECHHHHTT--CCCCBCSSSCCBCC
T ss_pred CEEEChhHhhh--hcCCccccCCCccc
Confidence 44566555432 22345777766664
No 173
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.78 E-value=8.3 Score=21.01 Aligned_cols=39 Identities=18% Similarity=0.385 Sum_probs=25.5
Q ss_pred ccccccccccccCCeeeecCCCCCcchHHHHHHHHhcCCCCCCCCCCCC
Q 043177 33 GICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHSNCPICRSDAT 81 (113)
Q Consensus 33 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 81 (113)
..|..|-..+.....+.. .=+..||..|+ .|-.|...+.
T Consensus 16 ~~C~~C~~~I~~~~~~~~--a~~~~~H~~CF--------~C~~C~~~L~ 54 (82)
T 2ehe_A 16 NTCAECQQLIGHDSRELF--YEDRHFHEGCF--------RCCRCQRSLA 54 (82)
T ss_dssp CBCTTTCCBCCSSCCBCC--CSSCCCBTTTS--------BCTTTCCBCS
T ss_pred CcCccCCCccccCcEEEE--eCCccccccCC--------eecCCCCccC
Confidence 468888888763222222 14677888775 4888877765
No 174
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=40.77 E-value=5.4 Score=23.86 Aligned_cols=34 Identities=21% Similarity=0.288 Sum_probs=20.7
Q ss_pred cccccccccccccCCeeeecCCCCCcchHHHHHHHH
Q 043177 32 DGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWL 67 (113)
Q Consensus 32 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl 67 (113)
=..|..|...+..+...... =+..||..|....+
T Consensus 36 CF~C~~C~~~L~~g~~f~~~--~g~~yC~~cy~~~~ 69 (123)
T 2l3k_A 36 CFKCAACQKHFSVGDRYLLI--NSDIVCEQDIYEWT 69 (123)
T ss_dssp TCBCTTTCCBCCTTCEEEEC--SSSEEEGGGHHHHH
T ss_pred cCccccCCCCCCCCCcEEee--CCEEEcHHHhHHHh
Confidence 45677777777544433322 46677777776655
No 175
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=40.56 E-value=7.1 Score=17.51 Aligned_cols=10 Identities=40% Similarity=0.989 Sum_probs=6.3
Q ss_pred CCCCCCCCCC
Q 043177 72 NCPICRSDAT 81 (113)
Q Consensus 72 ~CP~Cr~~~~ 81 (113)
.||+|+...+
T Consensus 5 ~CpvCk~q~P 14 (28)
T 2jvx_A 5 CCPKCQYQAP 14 (28)
T ss_dssp ECTTSSCEES
T ss_pred cCccccccCc
Confidence 4778876443
No 176
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=40.33 E-value=1.3 Score=24.92 Aligned_cols=35 Identities=14% Similarity=0.378 Sum_probs=20.8
Q ss_pred cccccc--ccccccc--CCeeeecC-----CCCCcchHHHHHHH
Q 043177 32 DGICAV--CLSEFEE--GEELRTLP-----ECLHSYHAPCIDMW 66 (113)
Q Consensus 32 ~~~C~I--C~~~~~~--~~~~~~l~-----~C~H~fh~~Ci~~w 66 (113)
..-||- |-..+.. +...+.-+ .|++.||..|...|
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAY 68 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEEC
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccc
Confidence 556775 6554322 11223333 58999999888776
No 177
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.00 E-value=17 Score=19.68 Aligned_cols=41 Identities=27% Similarity=0.529 Sum_probs=27.8
Q ss_pred ccccccccccccccCCeeeecCCCCCcchHHHHHHHHhcCCCCCCCCCCCCCC
Q 043177 31 EDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHSNCPICRSDATPS 83 (113)
Q Consensus 31 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 83 (113)
....|.-|-..+.. ..+ . .-+..||..|+ .|-.|+..+...
T Consensus 14 ~~~~C~~C~~~I~~-~~v--~-a~~~~~H~~CF--------~C~~C~~~L~~~ 54 (79)
T 2cor_A 14 GKYICQKCHAIIDE-QPL--I-FKNDPYHPDHF--------NCANCGKELTAD 54 (79)
T ss_dssp CCCBCTTTCCBCCS-CCC--C-CSSSCCCTTTS--------BCSSSCCBCCTT
T ss_pred CCCCCccCCCEecc-eEE--E-ECcceeCCCCC--------EeCCCCCccCCC
Confidence 34579999988773 222 2 26777888775 488898877643
No 178
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=39.55 E-value=8.7 Score=19.93 Aligned_cols=38 Identities=21% Similarity=0.443 Sum_probs=26.1
Q ss_pred ccccccccccccCCeeeecCCCCCcchHHHHHHHHhcCCCCCCCCCCCCC
Q 043177 33 GICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHSNCPICRSDATP 82 (113)
Q Consensus 33 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 82 (113)
..|..|-..+. +..+ .. -+..||..|+ .|-.|+..+..
T Consensus 6 ~~C~~C~~~I~-~~~~--~a-~~~~~H~~CF--------~C~~C~~~L~~ 43 (66)
T 1nyp_A 6 PICGACRRPIE-GRVV--NA-MGKQWHVEHF--------VCAKCEKPFLG 43 (66)
T ss_dssp CEETTTTEECC-SCEE--CC-TTSBEETTTC--------BCTTTCCBCSS
T ss_pred CCCcccCCEec-ceEE--EE-CccccccCcC--------EECCCCCCCCC
Confidence 47999998877 3322 22 5778888775 48888877753
No 179
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=39.12 E-value=8.2 Score=20.48 Aligned_cols=46 Identities=26% Similarity=0.608 Sum_probs=25.3
Q ss_pred CccccccccccccccCCeeeecCC--CC-CcchHHHHHHHH--hcCCCCCCCCC
Q 043177 30 DEDGICAVCLSEFEEGEELRTLPE--CL-HSYHAPCIDMWL--YSHSNCPICRS 78 (113)
Q Consensus 30 ~~~~~C~IC~~~~~~~~~~~~l~~--C~-H~fh~~Ci~~wl--~~~~~CP~Cr~ 78 (113)
++...| ||.... .+ ..+.-.. |. ..||..|+.--. ...-.||.|+.
T Consensus 9 ~e~~yC-~C~~~~-~g-~MI~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 9 NEPTYC-LCNQVS-YG-EMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRG 59 (62)
T ss_dssp -CCEET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHT
T ss_pred CCCcEE-ECCCCC-CC-CeeeeeCCCCCcccEecccCCcCcCCCCCEECcCccc
Confidence 345566 998863 23 2333334 44 789999986211 11224887754
No 180
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=38.00 E-value=10 Score=20.31 Aligned_cols=40 Identities=23% Similarity=0.508 Sum_probs=26.5
Q ss_pred cccccccccccc---CCeeeecCCCCCcchHHHHHHHHhcCCCCCCCCCCCCC
Q 043177 33 GICAVCLSEFEE---GEELRTLPECLHSYHAPCIDMWLYSHSNCPICRSDATP 82 (113)
Q Consensus 33 ~~C~IC~~~~~~---~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 82 (113)
..|+-|-..+.. ....... =+..||..|+ .|-.|+..+..
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~ 58 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVVAY--EGQSWHDYCF--------HCKKCSVNLAN 58 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEEEE--TTEEEETTTC--------BCSSSCCBCTT
T ss_pred ccCcccCCcccCCCCCceeEEE--CcceeCcccC--------EehhcCCCCCC
Confidence 468889888774 2222222 5678888775 48889887753
No 181
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=37.86 E-value=3.9 Score=22.42 Aligned_cols=40 Identities=25% Similarity=0.564 Sum_probs=25.8
Q ss_pred cccccccccccccCCeeeecCCCCCcchHHHHHHHHhcCCCCCCCCCCCCC
Q 043177 32 DGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHSNCPICRSDATP 82 (113)
Q Consensus 32 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 82 (113)
...|..|-..+..++.+.. -+..||..|+ .|-.|...+..
T Consensus 7 ~~~C~~C~~~I~~~~~~~a---~~~~~H~~CF--------~C~~C~~~L~~ 46 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQC---DGRSFHRCCF--------LCMVCRKNLDS 46 (81)
T ss_dssp -CBCSSSCCBCSSTTEEEE---TTEEEESSSE--------ECSSSCCEECS
T ss_pred CCcCcCcCccccCceeEEe---CCcccccccC--------ccCCCCCCCCC
Confidence 3468888888765554322 5667887765 37788776644
No 182
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.98 E-value=9.7 Score=19.97 Aligned_cols=37 Identities=19% Similarity=0.505 Sum_probs=25.3
Q ss_pred ccccccccccccCCeeeecCCCCCcchHHHHHHHHhcCCCCCCCCCCCC
Q 043177 33 GICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHSNCPICRSDAT 81 (113)
Q Consensus 33 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 81 (113)
..|..|-..+.. ..+ .. -+..||..|+ .|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~-~~~--~a-~~~~~H~~CF--------~C~~C~~~L~ 42 (70)
T 2d8z_A 6 SGCVQCKKPITT-GGV--TY-REQPWHKECF--------VCTACRKQLS 42 (70)
T ss_dssp CBCSSSCCBCCS-SEE--ES-SSSEEETTTS--------BCSSSCCBCT
T ss_pred CCCcccCCeecc-ceE--EE-CccccCCCCC--------ccCCCCCcCC
Confidence 468888888764 322 22 5778888775 4888887774
No 183
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.54 E-value=14 Score=19.40 Aligned_cols=40 Identities=18% Similarity=0.437 Sum_probs=25.5
Q ss_pred cccccccccccccCCeeeecCCCCCcchHHHHHHHHhcCCCCCCCCCCCCCC
Q 043177 32 DGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHSNCPICRSDATPS 83 (113)
Q Consensus 32 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 83 (113)
...|..|-..+.. ..+. . -+..||..|+ .|-.|+..+...
T Consensus 5 ~~~C~~C~~~I~~-~~~~-a--~~~~~H~~CF--------~C~~C~~~L~~~ 44 (70)
T 2d8x_A 5 SSGCHQCGEFIIG-RVIK-A--MNNSWHPECF--------RCDLCQEVLADI 44 (70)
T ss_dssp SSBCSSSCCBCCS-CCEE-E--TTEEECTTTS--------BCSSSCCBCSSS
T ss_pred CCcCccCCCEecc-eEEE-E--CcccccccCC--------EeCCCCCcCCCC
Confidence 3468888887763 2222 1 5667887775 488887776543
No 184
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=36.39 E-value=20 Score=21.25 Aligned_cols=49 Identities=14% Similarity=0.135 Sum_probs=28.8
Q ss_pred ccccccccccccc-CCeeeecCCCCCcchHHHHHHHHhcCCCCCCCCCCCCC
Q 043177 32 DGICAVCLSEFEE-GEELRTLPECLHSYHAPCIDMWLYSHSNCPICRSDATP 82 (113)
Q Consensus 32 ~~~C~IC~~~~~~-~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 82 (113)
=..|..|...+.. +...... =|..||..|...-+.....|..|...+..
T Consensus 29 CF~C~~C~~~L~~~~~~~~~~--~g~~yC~~~y~~~~~~~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 29 CLSCDLCGCRLGEVGRRLYYK--LGRKLCRRDYLRLFGQDGLCASCDKRIRA 78 (131)
T ss_dssp TCBCTTTCCBCSSTTCCEEEE--TTEEECHHHHHHHHCCCEECTTTCCEECT
T ss_pred HcccCcCCCccccCCCeEEEE--CCEEeecCchhhhCCCccChhhcCCccCc
Confidence 3467777777753 2222221 45667888876654433378888777653
No 185
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.96 E-value=17 Score=20.26 Aligned_cols=34 Identities=24% Similarity=0.371 Sum_probs=20.9
Q ss_pred CCccccccccccccccC-CeeeecCCCCCcchHHH
Q 043177 29 GDEDGICAVCLSEFEEG-EELRTLPECLHSYHAPC 62 (113)
Q Consensus 29 ~~~~~~C~IC~~~~~~~-~~~~~l~~C~H~fh~~C 62 (113)
...+..|..|.+.|.-- ..-..-+.|.|..|..|
T Consensus 22 ~~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~C 56 (76)
T 2csz_A 22 HYSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDC 56 (76)
T ss_dssp TCCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTS
T ss_pred CCCccchhhhCccccccccCCCcCcccChhhcccc
Confidence 56678999999988631 01112224778776655
No 186
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.94 E-value=13 Score=19.37 Aligned_cols=37 Identities=19% Similarity=0.472 Sum_probs=24.0
Q ss_pred ccccccccccccCCeeeecCCCCCcchHHHHHHHHhcCCCCCCCCCCCC
Q 043177 33 GICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHSNCPICRSDAT 81 (113)
Q Consensus 33 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 81 (113)
..|..|-..+.. ..+.. -+..||..|+ .|-.|+..+.
T Consensus 6 ~~C~~C~~~I~~-~~~~a---~~~~~H~~CF--------~C~~C~~~L~ 42 (69)
T 2cur_A 6 SGCVKCNKAITS-GGITY---QDQPWHADCF--------VCVTCSKKLA 42 (69)
T ss_dssp CCCSSSCCCCCT-TCEEE---TTEEECTTTT--------BCTTTCCBCT
T ss_pred CCCcccCCEeCc-ceEEE---CccccccCcC--------EECCCCCCCC
Confidence 468888887753 32221 5667887775 4888877765
No 187
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=34.87 E-value=27 Score=25.98 Aligned_cols=46 Identities=15% Similarity=0.418 Sum_probs=29.2
Q ss_pred cccccccccccCCeeeecCCCCCcchHHHHHHHH-----hcCCCCCCCCCC
Q 043177 34 ICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWL-----YSHSNCPICRSD 79 (113)
Q Consensus 34 ~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl-----~~~~~CP~Cr~~ 79 (113)
...||......+........|.-.||..|+.--- ...-.||.|+..
T Consensus 6 ~yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~ 56 (447)
T 3kv4_A 6 VYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVL 56 (447)
T ss_dssp EETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHH
T ss_pred eEEeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCccc
Confidence 4458988765333344444588999999984211 133479999654
No 188
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.74 E-value=11 Score=21.02 Aligned_cols=40 Identities=25% Similarity=0.467 Sum_probs=28.0
Q ss_pred ccccccccccccccCCeeeecCCCCCcchHHHHHHHHhcCCCCCCCCCCCCC
Q 043177 31 EDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHSNCPICRSDATP 82 (113)
Q Consensus 31 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 82 (113)
....|..|-..+. +..+. . -+..||..|+ .|-.|+..+..
T Consensus 24 ~~~~C~~C~~~I~-~~~v~--a-~~~~~H~~CF--------~C~~C~~~L~~ 63 (90)
T 2dar_A 24 RTPMCAHCNQVIR-GPFLV--A-LGKSWHPEEF--------NCAHCKNTMAY 63 (90)
T ss_dssp CCCBBSSSCCBCC-SCEEE--E-TTEEECTTTC--------BCSSSCCBCSS
T ss_pred CCCCCccCCCEec-ceEEE--E-CCccccccCC--------ccCCCCCCCCC
Confidence 3457999999885 33332 2 6788998876 48899887764
No 189
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=33.56 E-value=20 Score=18.61 Aligned_cols=14 Identities=36% Similarity=0.617 Sum_probs=9.5
Q ss_pred cccccccccccccc
Q 043177 31 EDGICAVCLSEFEE 44 (113)
Q Consensus 31 ~~~~C~IC~~~~~~ 44 (113)
+-..|++|...+..
T Consensus 9 ~iL~CP~c~~~L~~ 22 (56)
T 2kpi_A 9 EILACPACHAPLEE 22 (56)
T ss_dssp TSCCCSSSCSCEEE
T ss_pred hheeCCCCCCccee
Confidence 34578888887543
No 190
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=32.39 E-value=9.1 Score=23.01 Aligned_cols=39 Identities=21% Similarity=0.428 Sum_probs=27.7
Q ss_pred cccccccccccccCCeeeecCCCCCcchHHHHHHHHhcCCCCCCCCCCCC
Q 043177 32 DGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHSNCPICRSDAT 81 (113)
Q Consensus 32 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 81 (113)
...|.-|-..+.....+. .-+..||..|+ .|-.|+..+.
T Consensus 61 ~~~C~~C~~~I~~~~~v~---a~~~~wH~~CF--------~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLY---AMDSYWHSRCL--------KCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEE---ETTEEEETTTS--------BCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEE---eCCcEEccccc--------CcCcCCCccc
Confidence 357999999877532222 16778998886 4889988775
No 191
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.99 E-value=19 Score=19.40 Aligned_cols=39 Identities=28% Similarity=0.595 Sum_probs=26.4
Q ss_pred ccccccccccccCCeeeecCCCCCcchHHHHHHHHhcCCCCCCCCCCCCCC
Q 043177 33 GICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHSNCPICRSDATPS 83 (113)
Q Consensus 33 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 83 (113)
..|..|-..+.. ..+. .-+..||..|+ .|-.|+..+...
T Consensus 16 ~~C~~C~~~I~~-~~v~---a~~~~wH~~CF--------~C~~C~~~L~~~ 54 (81)
T 1v6g_A 16 TRCFSCDQFIEG-EVVS---ALGKTYHPDCF--------VCAVCRLPFPPG 54 (81)
T ss_dssp CBCTTTCCBCCS-CCEE---ETTEEECTTTS--------SCSSSCCCCCSS
T ss_pred CcCccccCEecc-ceEE---ECCceeCccCC--------ccccCCCCCCCC
Confidence 378889887763 3222 15678888776 488888877543
No 192
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=30.47 E-value=13 Score=19.25 Aligned_cols=38 Identities=21% Similarity=0.495 Sum_probs=25.3
Q ss_pred cccccccccccCCeeeecCCCCCcch--HHHHHHHHhcCCCCCCCCCCCC
Q 043177 34 ICAVCLSEFEEGEELRTLPECLHSYH--APCIDMWLYSHSNCPICRSDAT 81 (113)
Q Consensus 34 ~C~IC~~~~~~~~~~~~l~~C~H~fh--~~Ci~~wl~~~~~CP~Cr~~~~ 81 (113)
.|.-|-..+..++..... -+..|| ..|+ .|-.|+.++.
T Consensus 4 ~C~~C~~~I~~~~~~v~a--~~~~wH~~~~CF--------~C~~C~~~L~ 43 (65)
T 2iyb_E 4 VCQGCHNAIDPEVQRVTY--NNFSWHASTECF--------LCSCCSKCLI 43 (65)
T ss_dssp ECTTTSSEECTTSCEEEE--TTEEEETTTTTS--------BCTTTCCBCT
T ss_pred CCcCCCCeeccCceEEEE--CCCccCCCCCCE--------ECCCCCCcCC
Confidence 588888887753222222 577888 7775 4888887774
No 193
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=30.42 E-value=18 Score=18.97 Aligned_cols=14 Identities=21% Similarity=0.662 Sum_probs=9.2
Q ss_pred CCCCCCCCCCCCCC
Q 043177 70 HSNCPICRSDATPS 83 (113)
Q Consensus 70 ~~~CP~Cr~~~~~~ 83 (113)
.+.||.|+..+...
T Consensus 6 ~k~CP~C~~~Iek~ 19 (60)
T 1wd2_A 6 TKECPKCHVTIEKD 19 (60)
T ss_dssp CCCCTTTCCCCSSC
T ss_pred ceECcCCCCeeEeC
Confidence 45688887777543
No 194
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=30.11 E-value=15 Score=18.52 Aligned_cols=41 Identities=24% Similarity=0.533 Sum_probs=23.4
Q ss_pred ccccccccCCeeeecCCCCCcchHHHHHHHH---hcCCCCCCCCC
Q 043177 37 VCLSEFEEGEELRTLPECLHSYHAPCIDMWL---YSHSNCPICRS 78 (113)
Q Consensus 37 IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl---~~~~~CP~Cr~ 78 (113)
||..... +...+.-..|+..||..|+.--. .....||.|+.
T Consensus 8 ~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCT-TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCC-CCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 6776544 32333333588899999985322 12234777753
No 195
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=30.07 E-value=26 Score=22.37 Aligned_cols=27 Identities=7% Similarity=0.002 Sum_probs=12.2
Q ss_pred CCcchHHHHHHHHhcCCCCCCCCCCCC
Q 043177 55 LHSYHAPCIDMWLYSHSNCPICRSDAT 81 (113)
Q Consensus 55 ~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 81 (113)
+..||..|...-+.....|..|...+.
T Consensus 54 g~~yC~~cy~~~~~~~~~C~~C~~~I~ 80 (188)
T 1rut_X 54 GMILCRNDYIRLFGNSGACSACGQSIP 80 (188)
T ss_dssp TEEECHHHHHHHHSCCEECTTTCCEEC
T ss_pred CccccccccccccccCCccccCCCccc
Confidence 444555555443222224555555443
No 196
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.26 E-value=21 Score=18.97 Aligned_cols=37 Identities=19% Similarity=0.342 Sum_probs=24.4
Q ss_pred ccccccccccccCCeeeecCCCCCcchHHHHHHHHhcCCCCCCCCCCCC
Q 043177 33 GICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHSNCPICRSDAT 81 (113)
Q Consensus 33 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 81 (113)
..|.-|-..+.. .. +. .-+..||..|+ .|-.|..++.
T Consensus 6 ~~C~~C~~~I~~-~~--v~-a~~~~wH~~CF--------~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITG-RV--LE-AGEKHYHPSCA--------LCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSS-CC--BC-CSSCCBCTTTS--------CCSSSCCCCC
T ss_pred CCcccCCCEecC-ee--EE-eCCCCCCCCcC--------EeCCCCCCCC
Confidence 368888887654 21 12 26677887775 4888887775
No 197
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=27.02 E-value=26 Score=18.62 Aligned_cols=33 Identities=18% Similarity=0.389 Sum_probs=20.3
Q ss_pred ccccccccccccccCCeeeec-CCCCCcchHHHHH
Q 043177 31 EDGICAVCLSEFEEGEELRTL-PECLHSYHAPCID 64 (113)
Q Consensus 31 ~~~~C~IC~~~~~~~~~~~~l-~~C~H~fh~~Ci~ 64 (113)
+...| ||-.....+..+.-- ..|...||..|+.
T Consensus 9 ~~v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvg 42 (68)
T 2rsd_A 9 AKVRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVL 42 (68)
T ss_dssp CEECC-TTCCCSCCSCEEECSCTTTCEEEETTTSC
T ss_pred CCEEe-ECCCCcCCCCEEEECCCCCCCeEchhhCC
Confidence 34456 897665555444321 1388899999973
No 198
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=26.58 E-value=2.5 Score=23.98 Aligned_cols=32 Identities=28% Similarity=0.650 Sum_probs=17.8
Q ss_pred cccccccccc--CCeeeecCCCCCcchHHHHHHH
Q 043177 35 CAVCLSEFEE--GEELRTLPECLHSYHAPCIDMW 66 (113)
Q Consensus 35 C~IC~~~~~~--~~~~~~l~~C~H~fh~~Ci~~w 66 (113)
||-|-..+.. +...+.-+.|++.||..|-..|
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred CcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 7766554322 1222344469999976665544
No 199
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=25.43 E-value=19 Score=19.54 Aligned_cols=15 Identities=33% Similarity=0.795 Sum_probs=10.4
Q ss_pred HhcCCCCCCCCCCCC
Q 043177 67 LYSHSNCPICRSDAT 81 (113)
Q Consensus 67 l~~~~~CP~Cr~~~~ 81 (113)
+..--.||+|+.++.
T Consensus 5 LLeiL~CP~ck~~L~ 19 (69)
T 2pk7_A 5 LLDILACPICKGPLK 19 (69)
T ss_dssp GGGTCCCTTTCCCCE
T ss_pred HHhheeCCCCCCcCe
Confidence 344456999988774
No 200
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=24.70 E-value=87 Score=16.60 Aligned_cols=36 Identities=17% Similarity=0.440 Sum_probs=27.6
Q ss_pred ccccccccccccccCCeeeecCCCCCcchHH-HHHHH
Q 043177 31 EDGICAVCLSEFEEGEELRTLPECLHSYHAP-CIDMW 66 (113)
Q Consensus 31 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~-Ci~~w 66 (113)
-...|.-|...+..+...+.-...-|.||.. ||..+
T Consensus 19 ~~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL~~f 55 (62)
T 2das_A 19 AKITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSF 55 (62)
T ss_dssp SSCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHHHH
T ss_pred cccChhhccchhhcCceeeeecCchhheechHHHccc
Confidence 3558999999999888766665577888854 88765
No 201
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.35 E-value=26 Score=18.86 Aligned_cols=39 Identities=26% Similarity=0.578 Sum_probs=25.6
Q ss_pred cccccccccccccCCeeeecCCCCCcchHHHHHHHHhcCCCCCCCCCCCCC
Q 043177 32 DGICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHSNCPICRSDATP 82 (113)
Q Consensus 32 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 82 (113)
...|..|-..+.. ..+. . -+..||..|+ .|..|...+..
T Consensus 15 ~~~C~~C~~~I~~-~~~~--a-~~~~~H~~CF--------~C~~C~~~L~~ 53 (81)
T 2dlo_A 15 LEKCATCSQPILD-RILR--A-MGKAYHPGCF--------TCVVCHRGLDG 53 (81)
T ss_dssp CCBCTTTCCBCCS-CCEE--E-TTEEECTTTC--------BCSSSCCBCTT
T ss_pred CCccccCCCeecc-eeEE--E-CCccccHHhc--------CcccCCCccCC
Confidence 4468888887763 2222 1 5677887775 48889887753
No 202
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=24.34 E-value=94 Score=16.85 Aligned_cols=35 Identities=20% Similarity=0.468 Sum_probs=22.8
Q ss_pred CccccccccccccccCCeeeecCCCCCcchHHHHHH
Q 043177 30 DEDGICAVCLSEFEEGEELRTLPECLHSYHAPCIDM 65 (113)
Q Consensus 30 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~ 65 (113)
..+..|-+|.+.-.....-..+. |.-.||..|+..
T Consensus 28 ~~~v~C~~C~~~~~~~A~ksCl~-C~~s~C~~hl~~ 62 (78)
T 2ffw_A 28 AEKVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKA 62 (78)
T ss_dssp SCCCBCSSCCSSSCCBCCEEETT-TTEEECHHHHHH
T ss_pred CCCccCCcCCCCCCCCCeeEccC-ccchhhhhhhHh
Confidence 44667999986431112233444 999999999975
No 203
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=24.29 E-value=39 Score=21.55 Aligned_cols=22 Identities=23% Similarity=0.523 Sum_probs=13.2
Q ss_pred cCCCCCcchHHHHHHHHhcCCCCCCCCCC
Q 043177 51 LPECLHSYHAPCIDMWLYSHSNCPICRSD 79 (113)
Q Consensus 51 l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~ 79 (113)
.+.|||++-. .....||+|..+
T Consensus 141 C~~CG~i~~~-------~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 141 CPICGYTAVD-------EAPEYCPVCGAP 162 (170)
T ss_dssp CTTTCCEEES-------CCCSBCTTTCCB
T ss_pred eCCCCCeeCC-------CCCCCCCCCCCC
Confidence 3348887641 233479999653
No 204
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.24 E-value=25 Score=18.83 Aligned_cols=39 Identities=21% Similarity=0.398 Sum_probs=25.8
Q ss_pred ccccccccccccCCeeeecCCCCCcchHHHHHHHHhcCCCCCCCCCCCCCC
Q 043177 33 GICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHSNCPICRSDATPS 83 (113)
Q Consensus 33 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 83 (113)
..|..|-..+.. ..+.. -+..||..|+ .|-.|+..+...
T Consensus 16 ~~C~~C~~~I~~-~~v~a---~~~~~H~~CF--------~C~~C~~~L~~~ 54 (80)
T 1x3h_A 16 PKCGGCNRPVLE-NYLSA---MDTVWHPECF--------VCGDCFTSFSTG 54 (80)
T ss_dssp CBCTTTCCBCCS-SCEEE---TTEEECTTTC--------BCSSSCCBSCSS
T ss_pred CccccCCCeecc-eeEEE---CCCeEecCcC--------ChhhCCCCCCCC
Confidence 468888887764 22221 5667887775 488888877543
No 205
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.52 E-value=27 Score=18.67 Aligned_cols=37 Identities=22% Similarity=0.549 Sum_probs=24.9
Q ss_pred ccccccccccccCCeeeecCCCCCcchHHHHHHHHhcCCCCCCCCCCCC
Q 043177 33 GICAVCLSEFEEGEELRTLPECLHSYHAPCIDMWLYSHSNCPICRSDAT 81 (113)
Q Consensus 33 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 81 (113)
..|..|-..+... .+ .. -+..||..|+ .|-.|+..+.
T Consensus 16 ~~C~~C~~~I~~~-~v--~a-~~~~~H~~CF--------~C~~C~~~L~ 52 (80)
T 2cuq_A 16 PRCARCSKTLTQG-GV--TY-RDQPWHRECL--------VCTGCQTPLA 52 (80)
T ss_dssp CCCTTTCCCCCSC-CE--ES-SSSEECTTTC--------BCSSSCCBCT
T ss_pred CcCCCCCCEecCc-EE--EE-CCchhhhhhC--------CcccCCCcCC
Confidence 4688888877542 22 22 5678887775 4888887774
No 206
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=22.71 E-value=37 Score=19.68 Aligned_cols=35 Identities=14% Similarity=-0.015 Sum_probs=19.0
Q ss_pred ccccccccccccc-CCeeeecCCCCCcchHHHHHHHHh
Q 043177 32 DGICAVCLSEFEE-GEELRTLPECLHSYHAPCIDMWLY 68 (113)
Q Consensus 32 ~~~C~IC~~~~~~-~~~~~~l~~C~H~fh~~Ci~~wl~ 68 (113)
=..|..|...+.. +..... .=+..||..|...-+.
T Consensus 30 CF~C~~C~~~L~~~g~~~~~--~~g~~yC~~~y~~~f~ 65 (114)
T 1j2o_A 30 CLSCDLCGCRLGEVGRRLYY--KLGRKLCRRDYLRLGG 65 (114)
T ss_dssp TCCCSSSCSCCCCSSSCCCC--BTTBCCCHHHHHHHHT
T ss_pred cCcccccCCchhcCCCeeEE--ECCeeechHHHHHHhC
Confidence 3567777777653 212211 1455677777766544
No 207
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=21.67 E-value=37 Score=21.06 Aligned_cols=30 Identities=30% Similarity=0.512 Sum_probs=16.3
Q ss_pred CCCCccccccccccccccCC-eeeecCCCCC
Q 043177 27 PVGDEDGICAVCLSEFEEGE-ELRTLPECLH 56 (113)
Q Consensus 27 ~~~~~~~~C~IC~~~~~~~~-~~~~l~~C~H 56 (113)
..+..-..||-|...|.-.+ .....|.|+|
T Consensus 22 ~~M~~lP~CP~C~seytYeDg~l~vCPeC~h 52 (138)
T 2akl_A 22 HMVSTLPPCPQCNSEYTYEDGALLVCPECAH 52 (138)
T ss_dssp -CCCCSCCCTTTCCCCCEECSSSEEETTTTE
T ss_pred cccccCCCCCCCCCcceEecCCeEECCcccc
Confidence 34445678999988775321 2233344555
No 208
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=20.54 E-value=34 Score=18.46 Aligned_cols=12 Identities=17% Similarity=0.465 Sum_probs=9.0
Q ss_pred CCCCCCCCCCCC
Q 043177 70 HSNCPICRSDAT 81 (113)
Q Consensus 70 ~~~CP~Cr~~~~ 81 (113)
--.||+|+.++.
T Consensus 8 iL~CP~ck~~L~ 19 (68)
T 2jr6_A 8 ILVCPVTKGRLE 19 (68)
T ss_dssp CCBCSSSCCBCE
T ss_pred heECCCCCCcCe
Confidence 345999998764
No 209
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=20.36 E-value=22 Score=20.70 Aligned_cols=12 Identities=33% Similarity=1.063 Sum_probs=8.8
Q ss_pred CCCCCCCCCCCC
Q 043177 70 HSNCPICRSDAT 81 (113)
Q Consensus 70 ~~~CP~Cr~~~~ 81 (113)
...||+|...+.
T Consensus 47 g~~CPvCgs~l~ 58 (112)
T 1l8d_A 47 KGKCPVCGRELT 58 (112)
T ss_dssp SEECTTTCCEEC
T ss_pred CCCCCCCCCcCC
Confidence 456999977664
No 210
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=20.19 E-value=34 Score=18.48 Aligned_cols=10 Identities=30% Similarity=1.079 Sum_probs=8.2
Q ss_pred CCCCCCCCCC
Q 043177 72 NCPICRSDAT 81 (113)
Q Consensus 72 ~CP~Cr~~~~ 81 (113)
.||+|+.++.
T Consensus 10 ~CP~ck~~L~ 19 (68)
T 2hf1_A 10 VCPLCKGPLV 19 (68)
T ss_dssp BCTTTCCBCE
T ss_pred ECCCCCCcCe
Confidence 5999998764
Done!