BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043178
(109 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JKF|A Chain A, Holo 1l-Myo-Inositol-1-Phosphate Synthase
pdb|1JKF|B Chain B, Holo 1l-Myo-Inositol-1-Phosphate Synthase
pdb|1JKI|A Chain A, Myo-Inositol-1-Phosphate Synthase Complexed With An
Inhibitor, 2- Deoxy-Glucitol-6-Phosphate
pdb|1JKI|B Chain B, Myo-Inositol-1-Phosphate Synthase Complexed With An
Inhibitor, 2- Deoxy-Glucitol-6-Phosphate
pdb|1P1F|A Chain A, Crystal Structure Of Apo 1l-Myo-Inositol 1-Phosphate
Synthase
pdb|1P1F|B Chain B, Crystal Structure Of Apo 1l-Myo-Inositol 1-Phosphate
Synthase
pdb|1P1H|A Chain A, Crystal Structure Of The 1l-Myo-InositolNAD+ COMPLEX
pdb|1P1H|B Chain B, Crystal Structure Of The 1l-Myo-InositolNAD+ COMPLEX
pdb|1P1H|C Chain C, Crystal Structure Of The 1l-Myo-InositolNAD+ COMPLEX
pdb|1P1H|D Chain D, Crystal Structure Of The 1l-Myo-InositolNAD+ COMPLEX
pdb|1P1I|A Chain A, Crystal Structure Of The Nad+-Bound 1l-Myo-Inositol
1-Phosphate Synthase
pdb|1P1I|B Chain B, Crystal Structure Of The Nad+-Bound 1l-Myo-Inositol
1-Phosphate Synthase
pdb|1P1J|A Chain A, Crystal Structure Of The 1l-Myo-Inositol 1-Phosphate
Synthase Complexed With Nadh
pdb|1P1J|B Chain B, Crystal Structure Of The 1l-Myo-Inositol 1-Phosphate
Synthase Complexed With Nadh
pdb|1P1K|A Chain A, Crystal Structure Of The 1l-Myo-Inositol 1-Phosphate
Synthase Complexed With Nadh In The Presence Of Edta
pdb|1P1K|B Chain B, Crystal Structure Of The 1l-Myo-Inositol 1-Phosphate
Synthase Complexed With Nadh In The Presence Of Edta
pdb|1RM0|A Chain A, Crystal Structure Of Myo-Inositol 1-Phosphate Synthase
From Saccharomyces Cerevisiae In Complex With Nad+ And
2-Deoxy-D-Glucitol 6-(E)-Vinylhomophosphonate
pdb|1RM0|B Chain B, Crystal Structure Of Myo-Inositol 1-Phosphate Synthase
From Saccharomyces Cerevisiae In Complex With Nad+ And
2-Deoxy-D-Glucitol 6-(E)-Vinylhomophosphonate
Length = 533
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 31/44 (70%), Gaps = 6/44 (13%)
Query: 32 EELKIGKTKMKSVMVYFLVRAGI------SYNHLGNNDCMKLSA 69
++LK G+TK+KSV+ FLV AGI SYNHLGNND LSA
Sbjct: 319 DDLKSGQTKLKSVLAQFLVDAGIKPVSIASYNHLGNNDGYNLSA 362
>pdb|1LA2|A Chain A, Structural Analysis Of Saccharomyces Cerevisiae Myo-
Inositol Phosphate Synthase
pdb|1LA2|B Chain B, Structural Analysis Of Saccharomyces Cerevisiae Myo-
Inositol Phosphate Synthase
pdb|1LA2|C Chain C, Structural Analysis Of Saccharomyces Cerevisiae Myo-
Inositol Phosphate Synthase
pdb|1LA2|D Chain D, Structural Analysis Of Saccharomyces Cerevisiae Myo-
Inositol Phosphate Synthase
Length = 533
Score = 48.5 bits (114), Expect = 8e-07, Method: Composition-based stats.
Identities = 26/44 (59%), Positives = 31/44 (70%), Gaps = 6/44 (13%)
Query: 32 EELKIGKTKMKSVMVYFLVRAGI------SYNHLGNNDCMKLSA 69
++LK G+TK+KSV+ FLV AGI SYNHLGNND LSA
Sbjct: 319 DDLKSGQTKLKSVLAQFLVDAGIKPVSIASYNHLGNNDGYNLSA 362
>pdb|1VKO|A Chain A, Crystal Structure Of Inositol-3-Phosphate Synthase
(Ce21227) From Caenorhabditis Elegans At 2.30 A
Resolution
Length = 537
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 27/43 (62%), Gaps = 6/43 (13%)
Query: 32 EELKIGKTKMKSVMVYFLVRAG------ISYNHLGNNDCMKLS 68
++ K G+TK KS V FLV +G +SYNHLGNND LS
Sbjct: 323 DDFKSGQTKFKSAFVDFLVSSGMKPESIVSYNHLGNNDGKNLS 365
>pdb|1KCU|H Chain H, Crystal Structure Of Antibody Pc287
pdb|1KC5|H Chain H, Crystal Structure Of Antibody Pc287 In Complex With Ps1
Peptide
Length = 217
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 8/67 (11%)
Query: 25 RSNSRRDEELKIGKTKMKSVMVYFLVRAGISYNHLGNNDCMKLSAQ--------PIIPKA 76
R S+ L++ + +Y+ R G +++ G + +SA P+ P +
Sbjct: 72 RDTSKNQFFLQLNSVTTEDTAIYYCARGGTGFDYWGAGTTLTVSAAATTPPSVYPLAPGS 131
Query: 77 ASSPAVM 83
A++ A M
Sbjct: 132 ATAAASM 138
>pdb|1RHH|A Chain A, Crystal Structure Of The Broadly Hiv-1 Neutralizing Fab X5
At 1.90 Angstrom Resolution
pdb|1RHH|C Chain C, Crystal Structure Of The Broadly Hiv-1 Neutralizing Fab X5
At 1.90 Angstrom Resolution
pdb|2B4C|L Chain L, Crystal Structure Of Hiv-1 Jr-fl Gp120 Core Protein
Containing The Third Variable Region (v3) Complexed With
Cd4 And The X5 Antibody
Length = 215
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 26 SNSRRDEELKIGKTKMKSVMVYFLVRAGISYNHLGNNDCMKLSAQPIIPKAASSPAVMYF 85
S S D L IG+ + + + VY+ + G S G ++ I + ++P+V F
Sbjct: 66 SGSGTDFTLTIGRLEPEDLAVYYCQQYGTSPYTFGQGTKLE------IKRTVAAPSVFIF 119
Query: 86 EPSEH 90
PS+
Sbjct: 120 PPSDE 124
>pdb|4EP1|A Chain A, Crystal Structure Of Anabolic Ornithine
Carbamoyltransferase From Bacillus Anthracis
pdb|4EP1|B Chain B, Crystal Structure Of Anabolic Ornithine
Carbamoyltransferase From Bacillus Anthracis
Length = 340
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 5 LASLEKIKEAEILALIVFAIRSNSRRDEELKIGK 38
L +LE++ + EI++LI FAI + E L GK
Sbjct: 38 LLTLEELTQEEIISLIEFAIYLKKNKQEPLLQGK 71
>pdb|3AAZ|B Chain B, Crystal Structure Of The Humanized Recombinant Fab
Fragment Of A Murine; Antibody
pdb|3AAZ|L Chain L, Crystal Structure Of The Humanized Recombinant Fab
Fragment Of A Murine; Antibody
Length = 229
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 26 SNSRRDEELKIGKTKMKSVMVYFLVRAGISYNHLGNNDCMKLSAQPIIPKAASSPAVMYF 85
S S D LKI + + + V VY+ +A + G ++ I + ++P+V F
Sbjct: 70 SGSGTDFTLKISRVEAEDVGVYYCFQASLVPLTFGQGTKLE------IKRTVAAPSVFIF 123
Query: 86 EPSE 89
PS+
Sbjct: 124 PPSD 127
>pdb|2H21|A Chain A, Structure Of Rubisco Lsmt Bound To Adomet
pdb|2H21|B Chain B, Structure Of Rubisco Lsmt Bound To Adomet
pdb|2H21|C Chain C, Structure Of Rubisco Lsmt Bound To Adomet
pdb|2H23|A Chain A, Structure Of Rubisco Lsmt Bound To Trimethyllysine And
Adohcy
pdb|2H23|B Chain B, Structure Of Rubisco Lsmt Bound To Trimethyllysine And
Adohcy
pdb|2H23|C Chain C, Structure Of Rubisco Lsmt Bound To Trimethyllysine And
Adohcy
pdb|2H2E|A Chain A, Structure Of Rubisco Lsmt Bound To Azaadomet And Lysine
pdb|2H2E|B Chain B, Structure Of Rubisco Lsmt Bound To Azaadomet And Lysine
pdb|2H2E|C Chain C, Structure Of Rubisco Lsmt Bound To Azaadomet And Lysine
pdb|2H2J|A Chain A, Structure Of Rubisco Lsmt Bound To Sinefungin And
Monomethyllysine
pdb|2H2J|B Chain B, Structure Of Rubisco Lsmt Bound To Sinefungin And
Monomethyllysine
pdb|2H2J|C Chain C, Structure Of Rubisco Lsmt Bound To Sinefungin And
Monomethyllysine
Length = 440
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 15/79 (18%)
Query: 17 LALIVFAIRSNSRRDEELK---------------IGKTKMKSVMVYFLVRAGISYNHLGN 61
L++I+F IR SR D K + +++ + L++ +S
Sbjct: 78 LSVILFLIRERSREDSVWKHYFGILPQETDSTIYWSEEELQELQGSQLLKTTVSVKEYVK 137
Query: 62 NDCMKLSAQPIIPKAASSP 80
N+C+KL + I+P P
Sbjct: 138 NECLKLEQEIILPNKRLFP 156
>pdb|1MLV|A Chain A, Structure And Catalytic Mechanism Of A Set Domain Protein
Methyltransferase
pdb|1MLV|B Chain B, Structure And Catalytic Mechanism Of A Set Domain Protein
Methyltransferase
pdb|1MLV|C Chain C, Structure And Catalytic Mechanism Of A Set Domain Protein
Methyltransferase
pdb|1OZV|A Chain A, Crystal Structure Of The Set Domain Of Lsmt Bound To
Lysine And Adohcy
pdb|1OZV|B Chain B, Crystal Structure Of The Set Domain Of Lsmt Bound To
Lysine And Adohcy
pdb|1OZV|C Chain C, Crystal Structure Of The Set Domain Of Lsmt Bound To
Lysine And Adohcy
pdb|1P0Y|A Chain A, Crystal Structure Of The Set Domain Of Lsmt Bound To
Melysine And Adohcy
pdb|1P0Y|B Chain B, Crystal Structure Of The Set Domain Of Lsmt Bound To
Melysine And Adohcy
pdb|1P0Y|C Chain C, Crystal Structure Of The Set Domain Of Lsmt Bound To
Melysine And Adohcy
Length = 444
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 15/79 (18%)
Query: 17 LALIVFAIRSNSRRDEELK---------------IGKTKMKSVMVYFLVRAGISYNHLGN 61
L++I+F IR SR D K + +++ + L++ +S
Sbjct: 82 LSVILFLIRERSREDSVWKHYFGILPQETDSTIYWSEEELQELQGSQLLKTTVSVKEYVK 141
Query: 62 NDCMKLSAQPIIPKAASSP 80
N+C+KL + I+P P
Sbjct: 142 NECLKLEQEIILPNKRLFP 160
>pdb|4DTG|L Chain L, Hemostatic Effect Of A Monoclonal Antibody Mab 2021
Blocking The Interaction Between Fxa And Tfpi In A
Rabbit Hemophilia Model
Length = 219
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 26 SNSRRDEELKIGKTKMKSVMVYFLVRAGISYNHLGNNDCMKLSAQPIIPKAASSPAVMYF 85
S S D LKI + + + V VY+ ++A G ++ I + ++P+V F
Sbjct: 70 SGSGTDFTLKISRVEAEDVGVYYCLQATHFPQTFGGGTKVE------IKRTVAAPSVFIF 123
Query: 86 EPSEH 90
PS+
Sbjct: 124 PPSDE 128
>pdb|4F1H|A Chain A, Crystal Structure Of Tdp2 From Danio Rerio Complexed With
A Single Strand Dna
Length = 250
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 8 LEKIKEAEILALIVFAIRSNSRRDEELKIG 37
L+KIKEA A+++FA +N R E +G
Sbjct: 135 LQKIKEAPEDAIVIFAGDTNLRDAEVANVG 164
>pdb|4F1H|B Chain B, Crystal Structure Of Tdp2 From Danio Rerio Complexed With
A Single Strand Dna
Length = 251
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 8 LEKIKEAEILALIVFAIRSNSRRDEELKIG 37
L+KIKEA A+++FA +N R E +G
Sbjct: 136 LQKIKEAPEDAIVIFAGDTNLRDAEVANVG 165
>pdb|4FPV|A Chain A, Crystal Structure Of D. Rerio Tdp2 Complexed With Single
Strand Dna Product
pdb|4FPV|B Chain B, Crystal Structure Of D. Rerio Tdp2 Complexed With Single
Strand Dna Product
Length = 257
Score = 25.4 bits (54), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 8 LEKIKEAEILALIVFAIRSNSRRDEELKIG 37
L+KIKEA A+++FA +N R E +G
Sbjct: 142 LQKIKEAPEDAIVIFAGDTNLRDAEVANVG 171
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,318,515
Number of Sequences: 62578
Number of extensions: 71022
Number of successful extensions: 139
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 127
Number of HSP's gapped (non-prelim): 13
length of query: 109
length of database: 14,973,337
effective HSP length: 73
effective length of query: 36
effective length of database: 10,405,143
effective search space: 374585148
effective search space used: 374585148
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)