Query 043178
Match_columns 109
No_of_seqs 106 out of 202
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 13:40:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043178.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043178hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0693 Myo-inositol-1-phospha 100.0 4.5E-45 9.8E-50 309.4 7.0 99 1-101 247-390 (512)
2 PLN02438 inositol-3-phosphate 100.0 2.5E-38 5.3E-43 271.9 4.3 101 1-102 247-391 (510)
3 TIGR03450 mycothiol_INO1 inosi 99.9 1.8E-22 3.8E-27 168.2 4.5 75 26-100 174-263 (351)
4 PF01658 Inos-1-P_synth: Myo-i 99.8 4.3E-21 9.4E-26 137.7 -2.9 65 37-101 1-79 (112)
5 COG1260 INO1 Myo-inositol-1-ph 99.6 1.1E-16 2.3E-21 134.2 2.1 87 15-101 144-272 (362)
6 PF07994 NAD_binding_5: Myo-in 98.5 6.5E-08 1.4E-12 78.8 4.0 34 2-36 173-235 (295)
7 COG0735 Fur Fe2+/Zn2+ uptake r 65.5 4.4 9.6E-05 29.6 1.8 22 1-23 39-60 (145)
8 cd07153 Fur_like Ferric uptake 55.0 9.8 0.00021 25.5 1.9 21 2-23 20-40 (116)
9 PRK09462 fur ferric uptake reg 52.0 11 0.00024 27.0 1.9 21 2-23 37-57 (148)
10 PF01475 FUR: Ferric uptake re 49.9 13 0.00028 25.4 1.9 21 2-23 27-47 (120)
11 COG0773 MurC UDP-N-acetylmuram 35.9 91 0.002 27.8 5.4 48 3-54 82-134 (459)
12 PF11444 DUF2895: Protein of u 29.8 29 0.00062 27.7 1.2 13 13-25 55-67 (199)
13 PF02899 Phage_int_SAM_1: Phag 20.9 1.4E+02 0.003 18.2 2.9 22 2-25 2-23 (84)
14 PF10733 DUF2525: Protein of u 20.8 50 0.0011 22.0 0.9 35 1-37 2-37 (58)
15 PF06183 DinI: DinI-like famil 20.4 68 0.0015 21.0 1.4 17 90-106 21-37 (65)
16 PRK11639 zinc uptake transcrip 20.2 64 0.0014 24.0 1.4 21 4-25 31-51 (169)
No 1
>KOG0693 consensus Myo-inositol-1-phosphate synthase [Lipid transport and metabolism]
Probab=100.00 E-value=4.5e-45 Score=309.37 Aligned_cols=99 Identities=47% Similarity=0.646 Sum_probs=94.5
Q ss_pred ChhHHHHHHhcCCCccchHHHHHHH---------------------------hcc-ccCCCCCccccchhhhhHHHHHHh
Q 043178 1 MVNLLASLEKIKEAEILALIVFAIR---------------------------SNS-RRDEELKIGKTKMKSVMVYFLVRA 52 (109)
Q Consensus 1 ~~nl~~al~~~n~~eIsPStlyA~A---------------------------~~v-i~G~DfKtGQTk~KSvL~~~l~~~ 52 (109)
||||+++|+. ||.|||||||||+| ++| |+|||||+|||||||||||||+++
T Consensus 247 ~enl~~si~~-~~~EisPStifA~AsilEg~~yiNGSPQNTfVPGlielA~~~~vfigGDDfKSGQTK~KSvlvdFLVga 325 (512)
T KOG0693|consen 247 AENLLESIEK-DESEISPSTIFAIASILEGCPYINGSPQNTFVPGLIELAERHNVFIGGDDFKSGQTKMKSVLVDFLVGA 325 (512)
T ss_pred HHHHHHHHhc-CccccChHHHHHHHHHHcCCCcccCCCccccchhHHHHHHHhCceeccccccccchhHHHHHHHHHhcc
Confidence 5899999999 99999999999999 889 999999999999999999999999
Q ss_pred cc------cceecCCCCcccccCC-CCccccccC----------CceeeeCCCCCCceEEEeeecc
Q 043178 53 GI------SYNHLGNNDCMKLSAQ-PIIPKAASS----------PAVMYFEPSEHTNRLHSSSHMN 101 (109)
Q Consensus 53 Gl------SyNhLGNnDG~nLs~p-~f~sKei~~----------~~illy~~~~~pDh~V~i~~~~ 101 (109)
|| ||||||||||+|||+| |||||||+| |.| ||+|+|||||||+|.|+-
T Consensus 326 GiKp~SIvSYNHLGNNDG~NLSap~qFRSKEISKSnVvDDmv~SN~i-Ly~pge~pDH~vVIKYvp 390 (512)
T KOG0693|consen 326 GIKPTSIVSYNHLGNNDGMNLSAPQQFRSKEISKSNVVDDMVASNGI-LYEPGEHPDHCVVIKYVP 390 (512)
T ss_pred CCCceeEeeeccccCCCcccccchhhhhhhhcchhhhhHHHHhcCCc-ccCCCCCCCeEEEEEecc
Confidence 99 9999999999999999 999999955 456 999999999999999985
No 2
>PLN02438 inositol-3-phosphate synthase
Probab=100.00 E-value=2.5e-38 Score=271.92 Aligned_cols=101 Identities=50% Similarity=0.673 Sum_probs=94.5
Q ss_pred ChhHHHHHHhcCCCccchHHHHHHH---------------------------hcc-ccCCCCCccccchhhhhHHHHHHh
Q 043178 1 MVNLLASLEKIKEAEILALIVFAIR---------------------------SNS-RRDEELKIGKTKMKSVMVYFLVRA 52 (109)
Q Consensus 1 ~~nl~~al~~~n~~eIsPStlyA~A---------------------------~~v-i~G~DfKtGQTk~KSvL~~~l~~~ 52 (109)
+++|++||++ |++||||||+||+| +++ |+|||||||||+|||+|||||+.|
T Consensus 247 ~~~l~~ai~~-~~~eispS~~YA~AAl~eG~~fVNgsP~~t~vP~~~elA~~~gvpi~GDD~KSGqT~~ksvLa~~l~~R 325 (510)
T PLN02438 247 MENLLASIEK-DEAEISPSTLYALACILEGVPFINGSPQNTFVPGVIELAVKKNSLIGGDDFKSGQTKMKSVLVDFLVGA 325 (510)
T ss_pred HHHHHHHHhc-CCCcCChHHHHHHHHHHcCCCeEecCCccccChhhHHHHHHcCCCEecccccCCCchhHHHHHHHHHHc
Confidence 4799999999 99999999999999 889 999999999999999999999999
Q ss_pred cc------cceecCCCCcccccCC-CCccccccCCcee---------eeCCCCCCceEEEeeeccC
Q 043178 53 GI------SYNHLGNNDCMKLSAQ-PIIPKAASSPAVM---------YFEPSEHTNRLHSSSHMNS 102 (109)
Q Consensus 53 Gl------SyNhLGNnDG~nLs~p-~f~sKei~~~~il---------ly~~~~~pDh~V~i~~~~~ 102 (109)
|| |||||||+||+||++| +|+|||++|.+++ ||+++++|||||+|+|+-.
T Consensus 326 Glkv~s~~s~N~lGN~Dg~nLs~p~~~~SKeiSKs~vV~dil~~~~~ly~~g~~~~h~v~I~YvP~ 391 (510)
T PLN02438 326 GIKPTSIVSYNHLGNNDGMNLSAPQTFRSKEISKSNVVDDMVASNSILYEPGEHPDHVVVIKYVPY 391 (510)
T ss_pred CCceeeEEEEeccCcchhhhhCCHhHhhhhhhhHHHHHHHHHcccccccccCCCCceEeeccccCc
Confidence 99 9999999999999999 9999999766433 8999999999999999853
No 3
>TIGR03450 mycothiol_INO1 inositol 1-phosphate synthase, Actinobacterial type. This enzyme, inositol 1-phosphate synthase as found in Actinobacteria, produces an essential precursor for several different products, including mycothiol, which is a glutathione analog, and phosphatidylinositol, which is a phospholipid.
Probab=99.86 E-value=1.8e-22 Score=168.16 Aligned_cols=75 Identities=16% Similarity=0.211 Sum_probs=66.4
Q ss_pred hcc-ccCCCCCc--cccchhhhhHHHHHHhcc------cceecCCCCcccccCC-CCccccccCCcee--eeCCCCCCce
Q 043178 26 SNS-RRDEELKI--GKTKMKSVMVYFLVRAGI------SYNHLGNNDCMKLSAQ-PIIPKAASSPAVM--YFEPSEHTNR 93 (109)
Q Consensus 26 ~~v-i~G~DfKt--GQTk~KSvL~~~l~~~Gl------SyNhLGNnDG~nLs~p-~f~sKei~~~~il--ly~~~~~pDh 93 (109)
+++ ++|||+|| |||++|++|+|||+.||+ ++||+||+||+||.+| +|+||+++|.+++ +......+||
T Consensus 174 ~glPi~GDD~Ksq~GaTi~h~vLa~lf~~Rgl~v~~~yq~NigGN~Df~nL~~~~r~~SK~iSKs~vV~s~l~~~~~~~~ 253 (351)
T TIGR03450 174 AGVPIVGDDIKSQVGATITHRVLAKLFEDRGVRLDRTMQLNVGGNMDFKNMLERDRLESKKISKTQAVTSNLPDRPLKDK 253 (351)
T ss_pred CCCCEecccccccCCCchHHHHHHHHHHHcCCceeeEEEEeecCcchhhhhCChhhhhhhhhhHHHHHHHHhccCCCCCC
Confidence 788 99999996 999999999999999999 9999999999999999 9999999999875 2222234799
Q ss_pred EEEe---eec
Q 043178 94 LHSS---SHM 100 (109)
Q Consensus 94 ~V~i---~~~ 100 (109)
+|+| +|.
T Consensus 254 ~v~IgPsdYv 263 (351)
T TIGR03450 254 NVHIGPSDHV 263 (351)
T ss_pred cEEECCcCCC
Confidence 9999 775
No 4
>PF01658 Inos-1-P_synth: Myo-inositol-1-phosphate synthase; InterPro: IPR013021 This is a region of myo-inositol-1-phosphate synthases that is related to the glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain. 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; PDB: 3CIN_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=99.78 E-value=4.3e-21 Score=137.74 Aligned_cols=65 Identities=29% Similarity=0.456 Sum_probs=54.0
Q ss_pred cccchhhhhHHHHHHhcc------cceecCCCCcccccCC-CCccccccCCcee--eeCC-----CCCCceEEEeeecc
Q 043178 37 GKTKMKSVMVYFLVRAGI------SYNHLGNNDCMKLSAQ-PIIPKAASSPAVM--YFEP-----SEHTNRLHSSSHMN 101 (109)
Q Consensus 37 GQTk~KSvL~~~l~~~Gl------SyNhLGNnDG~nLs~p-~f~sKei~~~~il--ly~~-----~~~pDh~V~i~~~~ 101 (109)
|||+|||+|+|||+.||+ |||||||+||+||++| +|+||+++|.+++ +.+. ++.|+|+++|.|..
T Consensus 1 G~T~~k~~L~~~l~~Rgl~v~~~~q~NilGN~D~~nL~~~~r~~sK~~SKs~~v~~~l~~~~~ly~~~~~~~~~i~Yvp 79 (112)
T PF01658_consen 1 GQTILKSVLAPLLASRGLKVRSWYQYNILGNTDFLNLSDPERFKSKKISKSSVVDSILGSNPELYDEDPDHIGPIDYVP 79 (112)
T ss_dssp SHHHHHHHHHHHHHHTT-EEEEEEEEEEESSHHHHHHTSHHHHHHHHHHHHHHHHHHHSC-TTTSB---EEEEEEEE-G
T ss_pred CCccHHHHHHHHHHHcCCceEEEEEEeeccchHHHHhCCHhHHHhHHHHHHHHHHHHHhccccccCCCCcccccccccC
Confidence 899999999999999999 9999999999999999 9999999888765 2221 36899999999974
No 5
>COG1260 INO1 Myo-inositol-1-phosphate synthase [Lipid metabolism]
Probab=99.62 E-value=1.1e-16 Score=134.16 Aligned_cols=87 Identities=18% Similarity=0.268 Sum_probs=77.5
Q ss_pred ccchHHHHHHH----------------------------hcc-ccCCCCC--ccccchhhhhHHHHHHhcc------cce
Q 043178 15 EILALIVFAIR----------------------------SNS-RRDEELK--IGKTKMKSVMVYFLVRAGI------SYN 57 (109)
Q Consensus 15 eIsPStlyA~A----------------------------~~v-i~G~DfK--tGQTk~KSvL~~~l~~~Gl------SyN 57 (109)
..++++.||.| +++ |.|||.| +|+|.++++|+++|+.||. ++|
T Consensus 144 s~~a~~~YA~aal~aG~afvN~~P~~iA~dP~~~~~fee~g~pi~GDD~ksq~GaTi~h~~La~~f~~Rgvkv~~t~Q~N 223 (362)
T COG1260 144 SESASYFYAAAALAAGVAFVNAIPVFIASDPAWVELFEEKGLPIAGDDIKSQTGATILHRVLAQLFADRGVKVDRTYQLN 223 (362)
T ss_pred hhHHHHHHHHHHHHcCCceecccCccccCCHHHHHHHHHcCCceeccchhhhcCCceeHHHHHHHHHHcCceeeeEEEEe
Confidence 46789999988 889 9999995 8999999999999999999 999
Q ss_pred ecCCCCcccccCC-CCccccccCCcee----eeCCCCCCceEEEeeecc
Q 043178 58 HLGNNDCMKLSAQ-PIIPKAASSPAVM----YFEPSEHTNRLHSSSHMN 101 (109)
Q Consensus 58 hLGNnDG~nLs~p-~f~sKei~~~~il----ly~~~~~pDh~V~i~~~~ 101 (109)
|+||.|+.||.++ +++||+++|.+++ -|+-++.|.|+-.+.|+-
T Consensus 224 igGN~Dflnl~~r~r~~SKk~SKts~V~sil~~~~~~~~~~I~ps~yv~ 272 (362)
T COG1260 224 IGGNTDFLNLLARERLESKKISKTSAVTSILGYKLGDKPIHIGPSDYVE 272 (362)
T ss_pred cCCChHHHHhcchhhhhhhhhhHHHHHHHHhcccccCCCeEECcccccc
Confidence 9999999999999 9999999998754 444467788888888874
No 6
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=98.55 E-value=6.5e-08 Score=78.84 Aligned_cols=34 Identities=21% Similarity=0.275 Sum_probs=30.9
Q ss_pred hhHHHHHHhcCCCccchHHHHHHH----------------------------hcc-ccCCCCCc
Q 043178 2 VNLLASLEKIKEAEILALIVFAIR----------------------------SNS-RRDEELKI 36 (109)
Q Consensus 2 ~nl~~al~~~n~~eIsPStlyA~A----------------------------~~v-i~G~DfKt 36 (109)
++|+++|++ |+++++||++|||| +++ |+||||||
T Consensus 173 ~~l~~al~~-~~~~~~aS~~YA~AAl~~g~~fvN~tP~~~a~~P~l~ela~~~gvpi~GdD~KT 235 (295)
T PF07994_consen 173 EALEKALDE-NDPEISASMLYAYAALEAGVPFVNGTPSNIADDPALVELAEEKGVPIAGDDGKT 235 (295)
T ss_dssp HHHHHHHHT-T-TTHHHHHHHHHHHHHTTEEEEE-SSSTTTTSHHHHHHHHHHTEEEEESSBS-
T ss_pred HHHHHHhhc-CCCcCChHHHHHHHHHHCCCCeEeccCccccCCHHHHHHHHHcCCCeecchHhh
Confidence 689999999 99999999999999 899 99999999
No 7
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=65.50 E-value=4.4 Score=29.56 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=16.5
Q ss_pred ChhHHHHHHhcCCCccchHHHHH
Q 043178 1 MVNLLASLEKIKEAEILALIVFA 23 (109)
Q Consensus 1 ~~nl~~al~~~n~~eIsPStlyA 23 (109)
|+.+.+.+++ ..+.|||+|+|=
T Consensus 39 Aeei~~~l~~-~~p~islaTVYr 60 (145)
T COG0735 39 AEELYEELRE-EGPGISLATVYR 60 (145)
T ss_pred HHHHHHHHHH-hCCCCCHhHHHH
Confidence 3566677777 788888888886
No 8
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=55.04 E-value=9.8 Score=25.49 Aligned_cols=21 Identities=24% Similarity=0.301 Sum_probs=12.5
Q ss_pred hhHHHHHHhcCCCccchHHHHH
Q 043178 2 VNLLASLEKIKEAEILALIVFA 23 (109)
Q Consensus 2 ~nl~~al~~~n~~eIsPStlyA 23 (109)
+.+.+.+++ ..+.|+++|+|-
T Consensus 20 ~ei~~~l~~-~~~~i~~~TVYR 40 (116)
T cd07153 20 EEIYERLRK-KGPSISLATVYR 40 (116)
T ss_pred HHHHHHHHh-cCCCCCHHHHHH
Confidence 345555555 455666777665
No 9
>PRK09462 fur ferric uptake regulator; Provisional
Probab=51.96 E-value=11 Score=26.98 Aligned_cols=21 Identities=24% Similarity=0.183 Sum_probs=13.8
Q ss_pred hhHHHHHHhcCCCccchHHHHH
Q 043178 2 VNLLASLEKIKEAEILALIVFA 23 (109)
Q Consensus 2 ~nl~~al~~~n~~eIsPStlyA 23 (109)
+.+.+.|++ ..+.|+++|+|=
T Consensus 37 ~eI~~~l~~-~~~~i~~aTVYR 57 (148)
T PRK09462 37 EDLYKRLID-MGEEIGLATVYR 57 (148)
T ss_pred HHHHHHHHh-hCCCCCHHHHHH
Confidence 455566666 566777777775
No 10
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=49.91 E-value=13 Score=25.38 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=11.1
Q ss_pred hhHHHHHHhcCCCccchHHHHH
Q 043178 2 VNLLASLEKIKEAEILALIVFA 23 (109)
Q Consensus 2 ~nl~~al~~~n~~eIsPStlyA 23 (109)
+.+.+.+++ ..+.|+++|+|=
T Consensus 27 ~ei~~~l~~-~~~~is~~TVYR 47 (120)
T PF01475_consen 27 EEIYDKLRK-KGPRISLATVYR 47 (120)
T ss_dssp HHHHHHHHH-TTTT--HHHHHH
T ss_pred HHHHHHhhh-ccCCcCHHHHHH
Confidence 345555555 556666666664
No 11
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=35.92 E-value=91 Score=27.76 Aligned_cols=48 Identities=23% Similarity=0.285 Sum_probs=32.5
Q ss_pred hHHHHHHhcCCCccc-hHHHHHHH---hcc-ccCCCCCccccchhhhhHHHHHHhcc
Q 043178 3 NLLASLEKIKEAEIL-ALIVFAIR---SNS-RRDEELKIGKTKMKSVMVYFLVRAGI 54 (109)
Q Consensus 3 nl~~al~~~n~~eIs-PStlyA~A---~~v-i~G~DfKtGQTk~KSvL~~~l~~~Gl 54 (109)
.+++|.++ +=|-++ |-+|.-.- ..+ |+|..+||--| |.|+..|..+|+
T Consensus 82 Ei~~A~e~-~ipi~~r~e~Laelm~~~~~iaVaGTHGKTTTT---smla~vl~~~gl 134 (459)
T COG0773 82 EIVAALER-GIPVISRAEMLAELMRFRTSIAVAGTHGKTTTT---SMLAWVLEAAGL 134 (459)
T ss_pred HHHHHHHc-CCCeEcHHHHHHHHHhCCeeEEEeCCCCchhHH---HHHHHHHHhCCC
Confidence 45666666 454443 44444333 556 99999998877 457788999999
No 12
>PF11444 DUF2895: Protein of unknown function (DUF2895); InterPro: IPR021548 This is a bacterial family of uncharacterised proteins.
Probab=29.84 E-value=29 Score=27.70 Aligned_cols=13 Identities=23% Similarity=0.123 Sum_probs=11.7
Q ss_pred CCccchHHHHHHH
Q 043178 13 EAEILALIVFAIR 25 (109)
Q Consensus 13 ~~eIsPStlyA~A 25 (109)
--||||+++||.|
T Consensus 55 ~~eVP~~~VYaFa 67 (199)
T PF11444_consen 55 WWEVPPETVYAFA 67 (199)
T ss_pred cccCChHHHHHHH
Confidence 4589999999999
No 13
>PF02899 Phage_int_SAM_1: Phage integrase, N-terminal SAM-like domain; InterPro: IPR004107 Proteins containing this domain cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment [, ]. The phage integrase N-terminal SAM-like domain is almost always found with the signature that defines the phage integrase family (see IPR002104 from INTERPRO).; GO: 0003677 DNA binding, 0015074 DNA integration; PDB: 1Z1G_B 1Z19_A 1Z1B_A 2OXO_A 1P7D_B 3NRW_A 1A0P_A.
Probab=20.91 E-value=1.4e+02 Score=18.20 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=15.3
Q ss_pred hhHHHHHHhcCCCccchHHHHHHH
Q 043178 2 VNLLASLEKIKEAEILALIVFAIR 25 (109)
Q Consensus 2 ~nl~~al~~~n~~eIsPStlyA~A 25 (109)
+.+++-+.. +..+||+|+..|.
T Consensus 2 ~~f~~~l~~--~~~ls~~T~~~Y~ 23 (84)
T PF02899_consen 2 ERFLRYLEQ--ERGLSPNTIRSYR 23 (84)
T ss_dssp HHHHHHHHH--TTTS-HHHHHHHH
T ss_pred HHHHHHHHH--ccCCcHHHHHHHH
Confidence 345566654 5579999999998
No 14
>PF10733 DUF2525: Protein of unknown function (DUF2525); InterPro: IPR019669 This entry represents the uncharacterised protein family YodD which appear to be restricted to Enterobacteriaceae, and are thought to be stress-related proteins [].
Probab=20.79 E-value=50 Score=21.98 Aligned_cols=35 Identities=17% Similarity=0.100 Sum_probs=23.3
Q ss_pred ChhHHHHHHhcCCCccchHHHHHHHhcc-ccCCCCCcc
Q 043178 1 MVNLLASLEKIKEAEILALIVFAIRSNS-RRDEELKIG 37 (109)
Q Consensus 1 ~~nl~~al~~~n~~eIsPStlyA~A~~v-i~G~DfKtG 37 (109)
+|.|++||+++.+.||-.+.== ...+ +-|.++-|.
T Consensus 2 vdaLLaAI~e~s~~Ev~~~~d~--~~~~~vdgr~~ht~ 37 (58)
T PF10733_consen 2 VDALLAAINEISEGEVRRSPDD--PQRVSVDGRDYHTW 37 (58)
T ss_pred HHHHHHHHhhhcccceecCccC--CCceeccCcccccH
Confidence 4789999998888888653100 1445 777777664
No 15
>PF06183 DinI: DinI-like family; InterPro: IPR010391 This family of short proteins includes DNA-damage-inducible protein I (DinI) and related proteins. The SOS response, a set of cellular phenomena exhibited by eubacteria, is initiated by various causes that include DNA damage-induced replication arrest, and is positively regulated by the co- protease activity of RecA. Escherichia coli DinI, a LexA-regulated SOS gene product, shuts off the initiation of the SOS response when overexpressed in vivo. Biochemical and genetic studies indicated that DinI physically interacts with RecA to inhibit its co-protease activity []. The structure of DinI is known [].; PDB: 1GHH_A.
Probab=20.41 E-value=68 Score=21.01 Aligned_cols=17 Identities=12% Similarity=0.001 Sum_probs=12.4
Q ss_pred CCceEEEeeeccCCCcc
Q 043178 90 HTNRLHSSSHMNSNSIS 106 (109)
Q Consensus 90 ~pDh~V~i~~~~~~~~~ 106 (109)
.||..|+|.+|.+|+++
T Consensus 21 yPd~~v~Vr~~s~~~l~ 37 (65)
T PF06183_consen 21 YPDAEVRVRPGSANGLS 37 (65)
T ss_dssp -SS-EEEEEEESS-EEE
T ss_pred CCCceEeeeecccCccc
Confidence 48999999999988775
No 16
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=20.17 E-value=64 Score=23.96 Aligned_cols=21 Identities=14% Similarity=0.162 Sum_probs=11.0
Q ss_pred HHHHHHhcCCCccchHHHHHHH
Q 043178 4 LLASLEKIKEAEILALIVFAIR 25 (109)
Q Consensus 4 l~~al~~~n~~eIsPStlyA~A 25 (109)
+++.|.+ .+..+++..||+..
T Consensus 31 IL~~l~~-~~~hlSa~eI~~~L 51 (169)
T PRK11639 31 VLRLMSL-QPGAISAYDLLDLL 51 (169)
T ss_pred HHHHHHh-cCCCCCHHHHHHHH
Confidence 3444444 34456666666544
Done!