Query 043178
Match_columns 109
No_of_seqs 106 out of 202
Neff 3.3
Searched_HMMs 29240
Date Tue Mar 26 00:10:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043178.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043178hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vko_A Inositol-3-phosphate sy 100.0 1.2E-36 4.3E-41 261.4 1.1 100 1-101 265-408 (537)
2 1p1j_A Inositol-3-phosphate sy 100.0 1.3E-36 4.3E-41 261.2 0.6 100 1-101 261-406 (533)
3 3qvs_A MIPS, MYO-inositol-1-ph 100.0 8.7E-35 3E-39 242.4 0.5 98 1-101 164-300 (392)
4 1vjp_A MYO-inositol-1-phosphat 100.0 4.3E-32 1.5E-36 226.6 1.9 98 2-101 155-296 (394)
5 3cin_A MYO-inositol-1-phosphat 100.0 1.3E-30 4.4E-35 216.4 1.9 99 2-101 155-296 (394)
6 1gr0_A Inositol-3-phosphate sy 99.9 2.2E-27 7.6E-32 196.6 1.8 86 15-101 150-278 (367)
7 1mzb_A Ferric uptake regulatio 57.1 5.5 0.00019 26.9 2.0 21 2-23 38-58 (136)
8 2o03_A Probable zinc uptake re 56.4 5.8 0.0002 26.6 2.0 21 2-23 30-50 (131)
9 2w57_A Ferric uptake regulatio 54.3 6.4 0.00022 27.2 2.0 21 2-23 37-57 (150)
10 2fe3_A Peroxide operon regulat 50.5 7.2 0.00024 26.7 1.7 20 3-23 42-61 (145)
11 3eyy_A Putative iron uptake re 50.1 8 0.00027 26.6 1.9 21 2-23 37-57 (145)
12 3mwm_A ZUR, putative metal upt 48.7 9 0.00031 26.1 2.0 21 2-23 33-53 (139)
13 2xig_A Ferric uptake regulatio 46.3 7.7 0.00026 26.8 1.4 21 2-23 46-66 (150)
14 2p5k_A Arginine repressor; DNA 44.1 13 0.00046 21.1 2.0 21 2-23 23-43 (64)
15 2fu4_A Ferric uptake regulatio 43.7 13 0.00045 22.4 2.0 21 3-24 38-58 (83)
16 4ets_A Ferric uptake regulatio 36.8 11 0.00038 26.5 1.0 21 2-23 52-74 (162)
17 3t12_B Gliding protein MGLB; G 33.1 16 0.00054 25.8 1.3 31 40-70 12-42 (136)
18 2lyy_A Uncharacterized protein 20.2 32 0.0011 23.4 0.9 36 15-50 31-70 (96)
No 1
>1vko_A Inositol-3-phosphate synthase; CE21227, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD; 2.30A {Caenorhabditis elegans} SCOP: c.2.1.3 d.81.1.3
Probab=100.00 E-value=1.2e-36 Score=261.41 Aligned_cols=100 Identities=31% Similarity=0.457 Sum_probs=94.4
Q ss_pred ChhHHHHHHhcCCCccchHHHHHHH---------------------------hcc-ccCCCCCccccchhhhhHHHHHHh
Q 043178 1 MVNLLASLEKIKEAEILALIVFAIR---------------------------SNS-RRDEELKIGKTKMKSVMVYFLVRA 52 (109)
Q Consensus 1 ~~nl~~al~~~n~~eIsPStlyA~A---------------------------~~v-i~G~DfKtGQTk~KSvL~~~l~~~ 52 (109)
+++|++||++ |++||+||++||+| +++ |+|||||||||+|||+|||||+.|
T Consensus 265 ~~~L~~ai~~-~~~eisaS~~YA~AAl~aG~~FIN~sP~~~~~P~~~elae~~gvpI~GDD~KSGqT~lksvLa~~l~~R 343 (537)
T 1vko_A 265 ADEIMESIRV-NEDEVSPSNIFAVASILEGAHYINGSPQNTLVPGLIELAERHKVFVGGDDFKSGQTKFKSAFVDFLVSS 343 (537)
T ss_dssp HHHHHHHHHT-TCSSCCHHHHHHHHHHHTTCEEEECSSSCCCCHHHHHHHHHHTCCEECSCBCCSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhc-CCccCChHHHHHHHHHhcCCceeecCCcccCCHHHHHHHHHhCCceeccccccCCchhHHHHHHHHHHc
Confidence 3799999999 99999999999999 889 999999999999999999999999
Q ss_pred cc------cceecCCCCcccccCC-CCccccccCCcee---------eeCCCCCCceEEEeeecc
Q 043178 53 GI------SYNHLGNNDCMKLSAQ-PIIPKAASSPAVM---------YFEPSEHTNRLHSSSHMN 101 (109)
Q Consensus 53 Gl------SyNhLGNnDG~nLs~p-~f~sKei~~~~il---------ly~~~~~pDh~V~i~~~~ 101 (109)
|| |||||||+||+||++| +|+|||++|.+++ ||+|+++|||+|+|+|+-
T Consensus 344 Glkv~~~~s~NilGN~Dg~NL~~p~~~~SKeiSKs~vV~dil~~~~~lY~~G~~~dh~V~IdYVP 408 (537)
T 1vko_A 344 GMKPESIVSYNHLGNNDGKNLSEARQFRSKEISKSSVVDDMVKSNQILFPDAKNPDYCVVIKYVP 408 (537)
T ss_dssp TCEEEEEEEEEEECSHHHHHTTSHHHHHHHHHHHHTTTHHHHHHCTTTCTTCCCCEEEECCEECG
T ss_pred CCceeEEEEEEeccCcchhhhCCHhhhhhhhhHHHHHHHHHhccCcccccCCCCCCCceEEeecC
Confidence 99 9999999999999999 9999999777544 799999999999999974
No 2
>1p1j_A Inositol-3-phosphate synthase; 1L-MYO-inositol 1-phosphate, NADH, isomerase, rossmann fold; HET: NAI; 1.70A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.3 PDB: 1jkf_A* 1la2_A* 1p1f_A 1jki_A* 1p1i_A* 1p1h_A* 1p1k_A* 1rm0_A*
Probab=100.00 E-value=1.3e-36 Score=261.21 Aligned_cols=100 Identities=39% Similarity=0.561 Sum_probs=93.4
Q ss_pred ChhHHHHHHhcCCCccchHHHHHHH---------------------------hcc-ccCCCCCccccchhhhhHHHHHHh
Q 043178 1 MVNLLASLEKIKEAEILALIVFAIR---------------------------SNS-RRDEELKIGKTKMKSVMVYFLVRA 52 (109)
Q Consensus 1 ~~nl~~al~~~n~~eIsPStlyA~A---------------------------~~v-i~G~DfKtGQTk~KSvL~~~l~~~ 52 (109)
+++|++||++ |++||+||++||+| +++ |+|||||||||+|||+|||||+.|
T Consensus 261 ~~~l~~ai~~-~~~eispS~~YA~AAl~aG~~fIN~sP~~t~~P~~~elae~~gvpI~GDD~KSGqT~lksvLa~~l~~R 339 (533)
T 1p1j_A 261 MENLLQSIKN-DHEEIAPSTIFAAASILEGVPYINGSPQNTFVPGLVQLAEHEGTFIAGDDLKSGQTKLKSVLAQFLVDA 339 (533)
T ss_dssp HHHHHHHHHT-TCTTCCHHHHHHHHHHHTTCCEEECSCSCCCCHHHHHHHHHHTCCEEESSBCCSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhc-CCccCChHHHHHHHHHhcCCceeecCCcccCCHHHHHHHHHhCCceeccccccCCchhHHHHHHHHHHc
Confidence 3799999999 99999999999999 889 999999999999999999999999
Q ss_pred cc------cceecCCCCcccccCC-CCccccccCCcee---------eeCC--CCCCceEEEeeecc
Q 043178 53 GI------SYNHLGNNDCMKLSAQ-PIIPKAASSPAVM---------YFEP--SEHTNRLHSSSHMN 101 (109)
Q Consensus 53 Gl------SyNhLGNnDG~nLs~p-~f~sKei~~~~il---------ly~~--~~~pDh~V~i~~~~ 101 (109)
|| |||||||+||+||++| +|+||||+|.+++ ||.+ +++|||+|+|+|+-
T Consensus 340 Glkv~~~~s~N~lGN~Dg~NL~~p~~f~SKeiSKs~vV~dil~~~~~ly~~~~G~~~dh~V~IdYVP 406 (533)
T 1p1j_A 340 GIKPVSIASYNHLGNNDGYNLSAPKQFRSKEISKSSVIDDIIASNDILYNDKLGKKVDHCIVIKYMK 406 (533)
T ss_dssp TCEEEEEEEEEEECSHHHHHHTSHHHHHHHHHHHHHTTHHHHHTCTTTSBTTTBCCCEEEEEEEECG
T ss_pred CCceeEEEEEEeccCcchhhhCCHhhhhhhhhHHHHHHHHHHhccccccccccCCCCCCceEEeecC
Confidence 99 9999999999999999 9999999776544 6876 78999999999974
No 3
>3qvs_A MIPS, MYO-inositol-1-phosphate synthase (INO1); NAD binding rossmann fold, L-MYO-inositol 1-phosphate syntha isomerase; HET: NAD PG4; 1.70A {Archaeoglobus fulgidus} PDB: 1u1i_A* 3qvt_A* 3qvw_A* 3qvx_A* 3qw2_A*
Probab=100.00 E-value=8.7e-35 Score=242.41 Aligned_cols=98 Identities=19% Similarity=0.245 Sum_probs=91.8
Q ss_pred ChhHHHHHHhcCCCcc-chHHHHHHH----------------------------hcc-ccCCCCCccccchhhhhHHHHH
Q 043178 1 MVNLLASLEKIKEAEI-LALIVFAIR----------------------------SNS-RRDEELKIGKTKMKSVMVYFLV 50 (109)
Q Consensus 1 ~~nl~~al~~~n~~eI-sPStlyA~A----------------------------~~v-i~G~DfKtGQTk~KSvL~~~l~ 50 (109)
+++|++||++ |++|| |||++||+| +++ |+|||||||||+|||+|+|||+
T Consensus 164 ~~~l~~ai~~-~~~ei~spS~~YA~AAl~ag~~fvN~~P~~~a~~P~~~ela~~~g~pi~GdD~KsGqT~~ks~La~~l~ 242 (392)
T 3qvs_A 164 LEGFERMIDE-DRKEYASASMLYAYAALKLGLPYANFTPSPGSAIPALKELAEKKGVPHAGNDGKTGETLVKTTLAPMFA 242 (392)
T ss_dssp HHHHHHHHHT-TCGGGCCHHHHHHHHHHHTTCCEEECSSSCTTCSHHHHHHHHHHTCEEECSSBCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-CCccccChHHHHHHHHHHcCCCeeecCCccccCCHHHHHHHHHcCCCEecCcccCCCchHHHHHHHHHH
Confidence 3799999999 99999 999999999 899 9999999999999999999999
Q ss_pred Hhcc------cceecCCCCcccccCC-CCccccccCCcee--eeCCCCCCceEEEeeecc
Q 043178 51 RAGI------SYNHLGNNDCMKLSAQ-PIIPKAASSPAVM--YFEPSEHTNRLHSSSHMN 101 (109)
Q Consensus 51 ~~Gl------SyNhLGNnDG~nLs~p-~f~sKei~~~~il--ly~~~~~pDh~V~i~~~~ 101 (109)
.||+ |||||||+||+||++| +|+|||++|.+++ +. +++|||+|+|+|+-
T Consensus 243 ~Rglkv~~~~q~N~lGN~Dg~nL~~~~~~~SK~iSKs~vv~~~l--g~~~~~~v~I~Yvp 300 (392)
T 3qvs_A 243 YRNMEVVGWMSYNILGDYDGKVLSARDNKESKVLSKDKVLEKML--GYSPYSITEIQYFP 300 (392)
T ss_dssp HTTCEEEEEEEEEEECHHHHHHTTSHHHHHHHHHHHHTHHHHHH--SSCCEEEEEEEECG
T ss_pred HcCCceeEEEEEeccccchhhhhCCHhHhhhhhhHHHHHHHHHh--CCCCCCceEEeecC
Confidence 9999 9999999999999999 9999999999876 32 66789999999974
No 4
>1vjp_A MYO-inositol-1-phosphate synthase-related protein; TM1419, structural genomics, JCSG, PSI, protein structure initiative; HET: NAD; 1.70A {Thermotoga maritima} PDB: 3cin_A*
Probab=99.97 E-value=4.3e-32 Score=226.65 Aligned_cols=98 Identities=16% Similarity=0.254 Sum_probs=90.5
Q ss_pred hhHHHHHHhcCC-CccchHHHHHHH---------------------------------hcc-ccCCCCCccccchhhhhH
Q 043178 2 VNLLASLEKIKE-AEILALIVFAIR---------------------------------SNS-RRDEELKIGKTKMKSVMV 46 (109)
Q Consensus 2 ~nl~~al~~~n~-~eIsPStlyA~A---------------------------------~~v-i~G~DfKtGQTk~KSvL~ 46 (109)
++|++||++ |+ ++|+||++||+| +++ |+|||||||||+|||+|+
T Consensus 155 ~~l~~ai~~-~~~~~i~aS~~YA~AAl~~~~~~aG~~fVN~~P~~ia~~P~~~ela~~~gvpi~GDD~ktGqT~lks~La 233 (394)
T 1vjp_A 155 EDLLKAIEN-NDKERLTATQVYAYAAALYANKRGGAAFVNVIPTFIANDPAFVELAKENNLVVFGDDGATGATPFTADVL 233 (394)
T ss_dssp HHHHHHHHT-TCTTTCCHHHHHHHHHHHHHHHHTCEEEEECSSSCSTTCHHHHHHHHHTTEEEECSSBSCSHHHHHHHHH
T ss_pred HHHHHHHhc-CCCCccChHHHHHHHHHhhccccCCcceEecCCccccCCHHHHHHHHHcCCCEEccccCCCCCchHHHHH
Confidence 689999999 77 689999999998 888 999999999999999999
Q ss_pred HHHHHhcc------cceecCCCCcccccCC-CCccccccCCcee--eeCCCCCCceEEEeeecc
Q 043178 47 YFLVRAGI------SYNHLGNNDCMKLSAQ-PIIPKAASSPAVM--YFEPSEHTNRLHSSSHMN 101 (109)
Q Consensus 47 ~~l~~~Gl------SyNhLGNnDG~nLs~p-~f~sKei~~~~il--ly~~~~~pDh~V~i~~~~ 101 (109)
|||+.||+ |||||||+||+||++| +|+|||++|.+++ +.. +..|||+++|.|+-
T Consensus 234 ~~l~~Rglkv~~~~q~NilGN~Dg~nL~~p~~~~SKeiSKs~vv~d~l~-~~~~~hi~~i~Yvp 296 (394)
T 1vjp_A 234 SHLAQRNRYVKDVAQFNIGGNMDFLALTDDGKNKSKEFTKSSIVKDILG-YDAPHYIKPTGYLE 296 (394)
T ss_dssp HHHHHTTCEEEEEEEEEEECCGGGGSSCHHHHHHHHHHHSCCHHHHHHS-SCCCEECCCCEECG
T ss_pred HHHHHcCCceeEEEEEeccccchhhhhCCHhHhhhhhhHHHHHHHHHhc-CCCCccccccccCC
Confidence 99999999 9999999999999999 9999999999886 433 44789999999974
No 5
>3cin_A MYO-inositol-1-phosphate synthase-related protein; structura genomics, joint center for structural genomics, JCSG; HET: NAD; 1.70A {Thermotoga maritima MSB8}
Probab=99.96 E-value=1.3e-30 Score=216.39 Aligned_cols=99 Identities=16% Similarity=0.233 Sum_probs=88.9
Q ss_pred hhHHHHHHhcCCCccchHHHHHHH---------------------------------hcc-ccCCCCCccccchhhhhHH
Q 043178 2 VNLLASLEKIKEAEILALIVFAIR---------------------------------SNS-RRDEELKIGKTKMKSVMVY 47 (109)
Q Consensus 2 ~nl~~al~~~n~~eIsPStlyA~A---------------------------------~~v-i~G~DfKtGQTk~KSvL~~ 47 (109)
+++++++++.+++.|+||++||+| +++ |+|||||||||+|||+|+|
T Consensus 155 ~~~~~a~~~~~~~~i~as~~YA~AAl~~aa~~aG~~fvN~~P~~ia~~P~~~ela~~~gvpi~GdD~ktG~T~~k~~L~~ 234 (394)
T 3cin_A 155 EDLLKAIENNDKERLTATQVYAYAAALYANKRGGAAFVNVIPTFIANDPAFVELAKENNLVVFGDDGATGATPFTADVLS 234 (394)
T ss_dssp HHHHHHHHTTCTTTCCHHHHHHHHHHHHHHHHTCEEEEECSSSCSTTCHHHHHHHHHTTEEEECSSBSCSHHHHHHHHHH
T ss_pred HHHHHHhhccccccCChhHHHHHHHHHhhhhhcCCceecCCCccccCcHHHHHHHHHcCCcEecccccccchhHHHHHHH
Confidence 578999999445559999999987 889 9999999999999999999
Q ss_pred HHHHhcc------cceecCCCCcccccCC-CCccccccCCcee--eeCCCCCCceEEEeeecc
Q 043178 48 FLVRAGI------SYNHLGNNDCMKLSAQ-PIIPKAASSPAVM--YFEPSEHTNRLHSSSHMN 101 (109)
Q Consensus 48 ~l~~~Gl------SyNhLGNnDG~nLs~p-~f~sKei~~~~il--ly~~~~~pDh~V~i~~~~ 101 (109)
||+.||+ |||||||+||+||++| +|+||+++|.+++ +. .++.|+|+++|+|.-
T Consensus 235 ~l~~rgl~v~~~~q~N~lGN~Dg~nl~~~~~~~sK~~SK~~vv~~~l-~~~~~~h~~~~~Yvp 296 (394)
T 3cin_A 235 HLAQRNRYVKDVAQFNIGGNMDFLALTDDGKNKSKEFTKSSIVKDIL-GYDAPHYIKPTGYLE 296 (394)
T ss_dssp HHHHTTCEEEEEEEEEEECCGGGGSSCHHHHHHHHHHHSCCHHHHHH-SSCCCEECCCCEECG
T ss_pred HHHHCCCeEeEEEEEeecccchhhHhCCHhhhhhHHHHHHHHHHHHh-hccccccccccCCCC
Confidence 9999999 9999999999999999 9999999999886 33 245799999999975
No 6
>1gr0_A Inositol-3-phosphate synthase; isomerase, oxidoreductase, PSI, protein structure initiative, TB structural genomics consortium, TB; HET: NAD; 1.95A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3
Probab=99.93 E-value=2.2e-27 Score=196.56 Aligned_cols=86 Identities=17% Similarity=0.221 Sum_probs=60.2
Q ss_pred ccchHHHHHHH----------------------------hcc-ccCCCCC--ccccchhhhhHHHHHHhcc------cce
Q 043178 15 EILALIVFAIR----------------------------SNS-RRDEELK--IGKTKMKSVMVYFLVRAGI------SYN 57 (109)
Q Consensus 15 eIsPStlyA~A----------------------------~~v-i~G~DfK--tGQTk~KSvL~~~l~~~Gl------SyN 57 (109)
+++||++||+| +++ |+||||| ||||+|||+|+|||+.||+ |||
T Consensus 150 s~~aS~~YA~Aal~ag~~fvN~~P~~~~~~P~~~el~~~~g~pi~GdD~Ksq~G~T~~k~~La~~l~~rg~kv~~~~q~N 229 (367)
T 1gr0_A 150 SEEADKFYAQCAIDAGVAFVNALPVFIASDPVWAKKFTDARVPIVGDDIKSQVGATITHRVLAKLFEDRGVQLDRTMQLN 229 (367)
T ss_dssp CHHHHHHHHHHHHHHTCEEEECSSCCSTTSHHHHHHHHHHTCEEEESSBCCSSCHHHHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred CcCHHHHHHHHHHHcCCceEecCCccccCCHHHHHHHHHcCCCEeccccccccCCChHHHHHHHHHHHcCCceeEEEEEe
Confidence 46899999999 899 9999999 9999999999999999999 999
Q ss_pred ecCCCCcccccCC-CCccccccCCcee--eeCCCCCCceEEEe---eecc
Q 043178 58 HLGNNDCMKLSAQ-PIIPKAASSPAVM--YFEPSEHTNRLHSS---SHMN 101 (109)
Q Consensus 58 hLGNnDG~nLs~p-~f~sKei~~~~il--ly~~~~~pDh~V~i---~~~~ 101 (109)
||||+||+||++| +|+|||++|.+++ +.. ++.+||+|+| +|+-
T Consensus 230 ~lGN~D~~nL~~~~~~~sK~iSKs~vv~~~l~-~~~~d~~v~Igps~Yvp 278 (367)
T 1gr0_A 230 VGGNMDFLNMLERERLESKKISKTQAVTSNLK-REFKTKDVHIGPSDHVG 278 (367)
T ss_dssp EECSHHHHHHHC---------------------------CEECSEEEECG
T ss_pred ccCchhhhhhCChhhhhhhhhHHHHHHHHHhc-cCCCCCcEEECccccCC
Confidence 9999999999999 9999999999986 322 2336999999 8864
No 7
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=57.12 E-value=5.5 Score=26.92 Aligned_cols=21 Identities=10% Similarity=0.178 Sum_probs=14.2
Q ss_pred hhHHHHHHhcCCCccchHHHHH
Q 043178 2 VNLLASLEKIKEAEILALIVFA 23 (109)
Q Consensus 2 ~nl~~al~~~n~~eIsPStlyA 23 (109)
+.+.+.+++ ..+.|+++|+|=
T Consensus 38 ~ei~~~l~~-~~~~is~aTVYR 58 (136)
T 1mzb_A 38 EDVYKALME-AGEDVGLATVYR 58 (136)
T ss_dssp HHHHHHHHH-TTCCCCHHHHHH
T ss_pred HHHHHHHHh-hCCCCCHHHHHH
Confidence 456666666 566777777775
No 8
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=56.44 E-value=5.8 Score=26.65 Aligned_cols=21 Identities=19% Similarity=0.251 Sum_probs=13.4
Q ss_pred hhHHHHHHhcCCCccchHHHHH
Q 043178 2 VNLLASLEKIKEAEILALIVFA 23 (109)
Q Consensus 2 ~nl~~al~~~n~~eIsPStlyA 23 (109)
+.+.+.+++ ..+.|+++|+|=
T Consensus 30 ~ei~~~l~~-~~~~is~~TVYR 50 (131)
T 2o03_A 30 QELHDELRR-RGENIGLTTVYR 50 (131)
T ss_dssp HHHHHHHHH-TTCCCCHHHHHH
T ss_pred HHHHHHHHH-hCCCCCHhhHHH
Confidence 455566666 566677777775
No 9
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=54.29 E-value=6.4 Score=27.23 Aligned_cols=21 Identities=24% Similarity=0.156 Sum_probs=15.1
Q ss_pred hhHHHHHHhcCCCccchHHHHH
Q 043178 2 VNLLASLEKIKEAEILALIVFA 23 (109)
Q Consensus 2 ~nl~~al~~~n~~eIsPStlyA 23 (109)
+.+.+.+++ ..+.|+++|+|=
T Consensus 37 ~ei~~~l~~-~~~~is~aTVYR 57 (150)
T 2w57_A 37 EELYKKLID-LGEEIGLATVYR 57 (150)
T ss_dssp HHHHHHHHH-TTCCCCHHHHHH
T ss_pred HHHHHHHHH-hCCCCCHHHHHH
Confidence 456667777 677788888885
No 10
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=50.45 E-value=7.2 Score=26.69 Aligned_cols=20 Identities=20% Similarity=0.328 Sum_probs=11.1
Q ss_pred hHHHHHHhcCCCccchHHHHH
Q 043178 3 NLLASLEKIKEAEILALIVFA 23 (109)
Q Consensus 3 nl~~al~~~n~~eIsPStlyA 23 (109)
.+.+.+++ ..+.|+++|+|=
T Consensus 42 ei~~~l~~-~~~~is~aTVYR 61 (145)
T 2fe3_A 42 DIYKALEG-KFPNMSVATVYN 61 (145)
T ss_dssp HHHHHHGG-GCTTCCHHHHHH
T ss_pred HHHHHHHH-hCCCCChhhHHH
Confidence 44455555 455566666664
No 11
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=50.10 E-value=8 Score=26.58 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=15.3
Q ss_pred hhHHHHHHhcCCCccchHHHHH
Q 043178 2 VNLLASLEKIKEAEILALIVFA 23 (109)
Q Consensus 2 ~nl~~al~~~n~~eIsPStlyA 23 (109)
+.+.+.+++ ..+.|+++|+|=
T Consensus 37 ~ei~~~l~~-~~~~is~~TVYR 57 (145)
T 3eyy_A 37 DDILGEVRK-TASGINISTVYR 57 (145)
T ss_dssp HHHHHHHHT-TCTTCCHHHHHH
T ss_pred HHHHHHHHh-hCCCCCHhHHHH
Confidence 456667777 677788888886
No 12
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=48.72 E-value=9 Score=26.14 Aligned_cols=21 Identities=19% Similarity=0.180 Sum_probs=13.5
Q ss_pred hhHHHHHHhcCCCccchHHHHH
Q 043178 2 VNLLASLEKIKEAEILALIVFA 23 (109)
Q Consensus 2 ~nl~~al~~~n~~eIsPStlyA 23 (109)
+.+.+.+++ ..+.|+++|+|=
T Consensus 33 ~eI~~~l~~-~~~~is~aTVYR 53 (139)
T 3mwm_A 33 QELHDMLKH-KGDAVGLTTVYR 53 (139)
T ss_dssp HHHHHHHHH-TTCCCCHHHHHH
T ss_pred HHHHHHHHH-hCCCCCHHHHHH
Confidence 445566666 566777777775
No 13
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=46.30 E-value=7.7 Score=26.81 Aligned_cols=21 Identities=14% Similarity=0.216 Sum_probs=11.9
Q ss_pred hhHHHHHHhcCCCccchHHHHH
Q 043178 2 VNLLASLEKIKEAEILALIVFA 23 (109)
Q Consensus 2 ~nl~~al~~~n~~eIsPStlyA 23 (109)
+.+.+.+++ ..+.|+++|+|=
T Consensus 46 ~ei~~~l~~-~~~~is~aTVYR 66 (150)
T 2xig_A 46 EEITHSIRQ-KDKNTSISSVYR 66 (150)
T ss_dssp HHHHHHHHH-HSTTCCHHHHHH
T ss_pred HHHHHHHHH-hCCCCCHhhHHH
Confidence 344555555 455666666664
No 14
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=44.11 E-value=13 Score=21.09 Aligned_cols=21 Identities=14% Similarity=0.118 Sum_probs=14.7
Q ss_pred hhHHHHHHhcCCCccchHHHHH
Q 043178 2 VNLLASLEKIKEAEILALIVFA 23 (109)
Q Consensus 2 ~nl~~al~~~n~~eIsPStlyA 23 (109)
+.|.+.+++ ..+.||.+|||-
T Consensus 23 ~el~~~l~~-~~~~vs~~Tv~R 43 (64)
T 2p5k_A 23 DELVDMLKQ-DGYKVTQATVSR 43 (64)
T ss_dssp HHHHHHHHH-TTCCCCHHHHHH
T ss_pred HHHHHHHHH-hCCCcCHHHHHH
Confidence 345566666 577888888885
No 15
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=43.72 E-value=13 Score=22.40 Aligned_cols=21 Identities=24% Similarity=0.262 Sum_probs=13.9
Q ss_pred hHHHHHHhcCCCccchHHHHHH
Q 043178 3 NLLASLEKIKEAEILALIVFAI 24 (109)
Q Consensus 3 nl~~al~~~n~~eIsPStlyA~ 24 (109)
.|.+.+++ ..+.|+++|+|-.
T Consensus 38 el~~~l~~-~~~~is~~TVyR~ 58 (83)
T 2fu4_A 38 DLYKRLID-MGEEIGLATVYRV 58 (83)
T ss_dssp HHHHHHHH-TTCCCCHHHHHHH
T ss_pred HHHHHHHH-hCCCCCHhhHHHH
Confidence 45555666 5667888888764
No 16
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=36.76 E-value=11 Score=26.50 Aligned_cols=21 Identities=10% Similarity=0.224 Sum_probs=11.6
Q ss_pred hhHHHHHHhcC--CCccchHHHHH
Q 043178 2 VNLLASLEKIK--EAEILALIVFA 23 (109)
Q Consensus 2 ~nl~~al~~~n--~~eIsPStlyA 23 (109)
+.+.+.+++ . .+.|+++|+|=
T Consensus 52 ~eI~~~l~~-~~~~~~is~aTVYR 74 (162)
T 4ets_A 52 ESLYMEIKQ-AEPDLNVGIATVYR 74 (162)
T ss_dssp HHHHHHHHH-HCGGGCCCHHHHHH
T ss_pred HHHHHHHHh-hcCCCCCCHHHHHH
Confidence 344555555 4 45566666664
No 17
>3t12_B Gliding protein MGLB; G-domain containing protein, bacterial polarity, motility, homodimeric GAP protein, POLE localisation; HET: GDP; 2.20A {Thermus thermophilus} PDB: 3t1q_B*
Probab=33.10 E-value=16 Score=25.84 Aligned_cols=31 Identities=19% Similarity=0.187 Sum_probs=27.8
Q ss_pred chhhhhHHHHHHhcccceecCCCCcccccCC
Q 043178 40 KMKSVMVYFLVRAGISYNHLGNNDCMKLSAQ 70 (109)
Q Consensus 40 k~KSvL~~~l~~~GlSyNhLGNnDG~nLs~p 70 (109)
+++.+|.+++...|..+-.|...||.++++.
T Consensus 12 ~i~~iL~~L~~~~gv~~~~lvd~dG~vIa~~ 42 (136)
T 3t12_B 12 AAVEVLEETLRETGARYALLIDRKGFVLAHK 42 (136)
T ss_dssp HHHHHHHHHHHHHCCSEEEEEETTC-CCEEE
T ss_pred HHHHHHHHHHhhcCCeEEEEEcCCCCEEEEe
Confidence 5899999999999999999999999999764
No 18
>2lyy_A Uncharacterized protein; DUF3144, PF11342, structural genomics, unknown function; NMR {Shewanella oneidensis}
Probab=20.15 E-value=32 Score=23.45 Aligned_cols=36 Identities=14% Similarity=0.211 Sum_probs=24.4
Q ss_pred ccchHHHHHHHhcc--ccCCCCCccccc--hhhhhHHHHH
Q 043178 15 EILALIVFAIRSNS--RRDEELKIGKTK--MKSVMVYFLV 50 (109)
Q Consensus 15 eIsPStlyA~A~~v--i~G~DfKtGQTk--~KSvL~~~l~ 50 (109)
+|+.|++||.||=- ++-..|++|+-+ =|-..+++|+
T Consensus 31 ~Vsas~lyAaARfnAfv~a~~~~~~~~~~~~ke~~i~yf~ 70 (96)
T 2lyy_A 31 EVSASFMWALARYNAWFGSTSFETKEQMQAKKQEMMDYYM 70 (96)
T ss_dssp HHHHHHHHHHHHHSGGGGGGTCSSHHHHHTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 48999999999544 777888887644 2334444444
Done!